Psyllid ID: psy9003
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 1276 | 2.2.26 [Sep-21-2011] | |||||||
| Q6T308 | 699 | 1,4-alpha-glucan-branchin | N/A | N/A | 0.276 | 0.505 | 0.467 | 2e-97 | |
| Q9D6Y9 | 702 | 1,4-alpha-glucan-branchin | yes | N/A | 0.276 | 0.502 | 0.460 | 6e-96 | |
| Q8NKE1 | 683 | 1,4-alpha-glucan-branchin | N/A | N/A | 0.262 | 0.490 | 0.432 | 5e-86 | |
| Q6CCT1 | 691 | 1,4-alpha-glucan-branchin | yes | N/A | 0.265 | 0.490 | 0.407 | 3e-85 | |
| O23647 | 858 | 1,4-alpha-glucan-branchin | yes | N/A | 0.261 | 0.389 | 0.420 | 9e-84 | |
| Q9LZS3 | 805 | 1,4-alpha-glucan-branchin | no | N/A | 0.261 | 0.414 | 0.418 | 7e-81 | |
| Q08047 | 799 | 1,4-alpha-glucan-branchin | N/A | N/A | 0.262 | 0.419 | 0.404 | 1e-78 | |
| Q6BXN1 | 711 | 1,4-alpha-glucan-branchin | yes | N/A | 0.266 | 0.478 | 0.403 | 2e-75 | |
| Q04446 | 702 | 1,4-alpha-glucan-branchin | yes | N/A | 0.128 | 0.233 | 0.712 | 5e-71 | |
| Q6EAS5 | 699 | 1,4-alpha-glucan-branchin | yes | N/A | 0.128 | 0.234 | 0.724 | 1e-70 |
| >sp|Q6T308|GLGB_FELCA 1,4-alpha-glucan-branching enzyme OS=Felis catus GN=GBE1 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 358 bits (918), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 203/434 (46%), Positives = 252/434 (58%), Gaps = 81/434 (18%)
Query: 779 VDECHKAGLLCFMHV-----VCAAGDFNNWNREEFAYKKLDFGKWELVLPPNPDGSCKLT 833
V C GL C V GDFN+WN + YKKLD+GKWEL +PP + S +
Sbjct: 75 VHRCADGGLYCKEWAPGAEGVFLTGDFNDWNPFSYPYKKLDYGKWELYIPPKQNKSQLVP 134
Query: 834 HLSQVKLVVRNQHGHLLDRLSPWATYVT-EPPVVGHAYEQRIWNPKPQDKHKWTSSKPKK 892
H S++K+V+R++ G +L R+SPWA YVT E V Y+ W+ P+ +K+ S+PKK
Sbjct: 135 HGSKLKVVIRSKSGEILYRISPWAKYVTREGENVN--YDWTHWD--PEHPYKFKHSRPKK 190
Query: 893 PDNLKIYESHVGICTQEQKCASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMG 952
P ++IYESHVGI + E K ASY+ F V+PRI KD +N
Sbjct: 191 PRGVRIYESHVGISSYEGKIASYKHFTYNVLPRI------------------KDLGYNCI 232
Query: 953 NIVHTLTNRRYMEKTVAYAESHDQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACE 1012
++ + + Y A G + +F+ A
Sbjct: 233 QMMAIMEHAYY-------------ASFGYQITSFFA---------------------ASS 258
Query: 1013 KFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNE 1072
++GTPE+ LK LVD H G+ VLLDVVHSHASKN DGLN
Sbjct: 259 RYGTPEE-------------------LKELVDTAHSMGITVLLDVVHSHASKNSEDGLNM 299
Query: 1073 FDGTQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSM 1132
FDGT +C+FH GPRG H LWDSRLF YS EVLRFLLSN+RW+L+EY FDGFRFDGVTSM
Sbjct: 300 FDGTDSCYFHSGPRGNHDLWDSRLFIYSSWEVLRFLLSNIRWWLEEYGFDGFRFDGVTSM 359
Query: 1133 LYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCR 1192
LYH+HG G+ FSG Y EYFGL VD DALIYLM+AN +H YP ITIAEDVSGMPA C
Sbjct: 360 LYHHHGMGQAFSGDYHEYFGLQVDEDALIYLMLANHLVHTLYPNSITIAEDVSGMPALCS 419
Query: 1193 PVTEGGTGFDYRLV 1206
P+++GG GFDYRL
Sbjct: 420 PISQGGVGFDYRLA 433
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Required for sufficient glycogen accumulation. The alpha 1-6 branches of glycogen play an important role in increasing the solubility of the molecule and, consequently, in reducing the osmotic pressure within cells. Felis catus (taxid: 9685) EC: 2EC: .EC: 4EC: .EC: 1EC: .EC: 1EC: 8 |
| >sp|Q9D6Y9|GLGB_MOUSE 1,4-alpha-glucan-branching enzyme OS=Mus musculus GN=Gbe1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 353 bits (906), Expect = 6e-96, Method: Compositional matrix adjust.
Identities = 200/434 (46%), Positives = 251/434 (57%), Gaps = 81/434 (18%)
Query: 779 VDECHKAGLLCFMHV-----VCAAGDFNNWNREEFAYKKLDFGKWELVLPPNPDGSCKLT 833
+ C G+ C V G+F+ WN YKKL++GKWEL +PP + S +
Sbjct: 78 IHRCSDGGIYCKEWAPGAEGVFLTGEFSGWNPFSHPYKKLEYGKWELYIPPKQNKSPLIP 137
Query: 834 HLSQVKLVVRNQHGHLLDRLSPWATYVT-EPPVVGHAYEQRIWNPKPQDKHKWTSSKPKK 892
H S++K+V+ ++ G +L R+SPWA YV E V Y+ W P+D +K+ S+PKK
Sbjct: 138 HGSKLKVVITSKSGEILYRISPWAKYVVRENNNVN--YDWIHW--APEDPYKFKHSRPKK 193
Query: 893 PDNLKIYESHVGICTQEQKCASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMG 952
P +L+IYESHVGI + E K ASY+ F V+PRI KD +N
Sbjct: 194 PRSLRIYESHVGISSHEGKIASYKHFTSNVLPRI------------------KDLGYNCI 235
Query: 953 NIVHTLTNRRYMEKTVAYAESHDQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACE 1012
++ + + Y A G + +F+ A
Sbjct: 236 QLMAIMEHAYY-------------ASFGYQITSFFA---------------------ASS 261
Query: 1013 KFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNE 1072
++GTPE+LK LVD H G+ VLLDVVHSHASKN DGLN
Sbjct: 262 RYGTPEELKELVDTAHSMGIV-------------------VLLDVVHSHASKNSEDGLNM 302
Query: 1073 FDGTQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSM 1132
FDGT +C+FH GPRGTH LWDSRLF YS EVLRFLLSN+RW+L+EY FDGFRFDGVTSM
Sbjct: 303 FDGTDSCYFHSGPRGTHDLWDSRLFIYSSWEVLRFLLSNIRWWLEEYCFDGFRFDGVTSM 362
Query: 1133 LYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCR 1192
LYH+HG G+GFSG Y+EYFGL VD DALIYLM+AN H YP+ ITIAEDVSGMPA C
Sbjct: 363 LYHHHGMGQGFSGDYNEYFGLQVDEDALIYLMLANHLAHTLYPDSITIAEDVSGMPALCS 422
Query: 1193 PVTEGGTGFDYRLV 1206
P ++GG GFDYRL
Sbjct: 423 PTSQGGGGFDYRLA 436
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Required for sufficient glycogen accumulation. The alpha 1-6 branches of glycogen play an important role in increasing the solubility of the molecule and, consequently, in reducing the osmotic pressure within cells. Mus musculus (taxid: 10090) EC: 2 EC: . EC: 4 EC: . EC: 1 EC: . EC: 1 EC: 8 |
| >sp|Q8NKE1|GLGB_GLOIN 1,4-alpha-glucan-branching enzyme OS=Glomus intraradices GN=GLC3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 320 bits (820), Expect = 5e-86, Method: Compositional matrix adjust.
Identities = 177/409 (43%), Positives = 232/409 (56%), Gaps = 74/409 (18%)
Query: 798 GDFNNWNREEFAYKKLDFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHGHLLDRLSPWA 857
G+FN+W+R + KK FG WE+ +P +G + H +++K+ + G +DRL W
Sbjct: 87 GEFNDWDRSKHPMKKDSFGVWEVHIPAK-NGIPTIPHNTKIKISMTTPEGECIDRLPAWI 145
Query: 858 TYVTEPPVVGHAYEQRIWNPKPQDKHKWTSSKPKKPDNLKIYESHVGICTQEQKCASYED 917
VT+ V AY+ WNP PQ K++W ++ PKKP +L+IYE+HVGI T E + +Y +
Sbjct: 146 KRVTQDLNVSLAYDAIFWNP-PQ-KYQWKNNSPKKPTSLRIYEAHVGISTNEGRVGTYNE 203
Query: 918 FVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAESHDQA 977
F V LK+ KD +N ++ + + Y A
Sbjct: 204 FTDNV------------------LKRIKDLGYNAIQLMAIMEHAYY-------------A 232
Query: 978 LVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPE 1037
G + +F+ ++GTPE
Sbjct: 233 SFGYQVTSFF---------------------GVSSRYGTPE------------------- 252
Query: 1038 QLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRLF 1097
+L L+D H GLYVLLDVVHSHA KNVLDGLN FDG+ C+FH+G +G H LWDSRLF
Sbjct: 253 ELMRLIDTAHGMGLYVLLDVVHSHACKNVLDGLNMFDGSDHCYFHEGGKGRHDLWDSRLF 312
Query: 1098 NYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDT 1157
NY EVLRFLLSNLR++++EY+FDGFRFDGVTSM+YH+HG G GFSG Y EYFG VD
Sbjct: 313 NYGHWEVLRFLLSNLRFFMEEYRFDGFRFDGVTSMMYHHHGIGTGFSGGYHEYFGDTVDE 372
Query: 1158 DALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDYRLV 1206
++YLM+AN LH YP IIT++EDVSGMP C PV EGG GFDYRL
Sbjct: 373 GGVVYLMLANDMLHKLYPRIITVSEDVSGMPGLCLPVEEGGIGFDYRLA 421
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Glomus intraradices (taxid: 4876) EC: 2 EC: . EC: 4 EC: . EC: 1 EC: . EC: 1 EC: 8 |
| >sp|Q6CCT1|GLGB_YARLI 1,4-alpha-glucan-branching enzyme OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=GLC3 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 317 bits (813), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 171/420 (40%), Positives = 233/420 (55%), Gaps = 81/420 (19%)
Query: 797 AGDFNNWNREEFAYKKLDFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHGHLLDRLSPW 856
GDFN W+R+++ + ++G W + +PP DG + H S+VKL ++ +G +DRL W
Sbjct: 74 TGDFNGWDRQQYHMTRDEYGLWSVTVPPTSDGQVAIPHNSKVKLALKTSNGQWVDRLPAW 133
Query: 857 ATYVTEPPVVGHAYEQRIWNPKPQDKHKWTSSKPKKPDNLKIYESHVGICTQEQKCASYE 916
+TYV + YE WNP +K++W + P P N +IYE+HVGI + E + +Y+
Sbjct: 134 STYVVQDLSKSPIYEAVFWNPPESEKYQWKNKSPPTPANAQIYEAHVGISSSEPRVGTYK 193
Query: 917 DFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAESHDQ 976
+F + ++PRI K G + I+L+ A E
Sbjct: 194 EFTKNILPRIHKLGYNV----IQLM---------------------------AIMEHAYY 222
Query: 977 ALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTP 1036
A G + +F+ + ++GTPE
Sbjct: 223 ASFGYQVTSFYAI---------------------SSRYGTPE------------------ 243
Query: 1037 EQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRL 1096
LK L+D H G+ VLLDVVHSHA KNV DGLN FDGT +FH G +G HP WDS+L
Sbjct: 244 -DLKELIDTAHGMGITVLLDVVHSHACKNVDDGLNNFDGTDHQYFHGGAKGDHPQWDSKL 302
Query: 1097 FNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFG-LNV 1155
F+Y + EVLRFLLSNLR+Y++EY FDGFRFDGVTSMLY +HG G GFSG Y EYFG +V
Sbjct: 303 FDYGKYEVLRFLLSNLRFYIEEYHFDGFRFDGVTSMLYKHHGLGTGFSGGYHEYFGDEHV 362
Query: 1156 DTDALIYLMVANKFLHDKYP---------EIITIAEDVSGMPASCRPVTEGGTGFDYRLV 1206
D A++YLM+A++ + + P ++IAEDVSGMPA CRPV+EGG GFDYRL
Sbjct: 363 DQQAVVYLMLAHELMRELQPLLRPGEDAGNFLSIAEDVSGMPALCRPVSEGGVGFDYRLA 422
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Yarrowia lipolytica (strain CLIB 122 / E 150) (taxid: 284591) EC: 2 EC: . EC: 4 EC: . EC: 1 EC: . EC: 1 EC: 8 |
| >sp|O23647|GLGB1_ARATH 1,4-alpha-glucan-branching enzyme 2-1, chloroplastic/amyloplastic OS=Arabidopsis thaliana GN=SBE2.1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 312 bits (800), Expect = 9e-84, Method: Compositional matrix adjust.
Identities = 172/409 (42%), Positives = 227/409 (55%), Gaps = 75/409 (18%)
Query: 798 GDFNNWNREEFAYKKLDFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHGHLLDRLSPWA 857
GDFNNWN + + DFG WE+ LP N DGS + H S+VK+ + G + D + W
Sbjct: 230 GDFNNWNAKSDVMARNDFGVWEIFLPNNADGSPAIPHGSRVKIRMDTPSG-IKDSIPAWI 288
Query: 858 TYVTEPPVVGHA-YEQRIWNPKPQDKHKWTSSKPKKPDNLKIYESHVGICTQEQKCASYE 916
Y +PP G Y ++P +DK+ + +PKKP +L+IYESHVG+ + E K +Y
Sbjct: 289 KYSVQPP--GEIPYNGVYYDPPEEDKYAFKHPRPKKPTSLRIYESHVGMSSTEPKINTYA 346
Query: 917 DFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAESHDQ 976
+F V+PRI K G N V + +++ YA
Sbjct: 347 NFRDDVLPRIKKLGY---------------------NAVQIMA----IQEHAYYA----- 376
Query: 977 ALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTP 1036
H++ PS +FGTP+ LK L+D+ H+ GL
Sbjct: 377 ---------------SFGYHVTNFFAPS-------SRFGTPDDLKSLIDKAHELGLV--- 411
Query: 1037 EQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRL 1096
VL+D+VHSHASKN LDGL+ FDGT +FH G RG H +WDSRL
Sbjct: 412 ----------------VLMDIVHSHASKNTLDGLDMFDGTDGQYFHSGSRGYHWMWDSRL 455
Query: 1097 FNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVD 1156
FNY EVLR+LLSN RW+L+EY+FDGFRFDGVTSM+Y +HG F+G+Y+EYFG + D
Sbjct: 456 FNYGSWEVLRYLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVEFTGNYNEYFGYSTD 515
Query: 1157 TDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDYRL 1205
DA++YLM+ N +H YPE I + EDVSGMPA C PV +GG GFDYRL
Sbjct: 516 VDAVVYLMLVNDLIHGLYPEAIVVGEDVSGMPAFCVPVEDGGVGFDYRL 564
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Catalyzes the formation of the alpha-1,6-glucosidic linkages in starch by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 4 EC: . EC: 1 EC: . EC: 1 EC: 8 |
| >sp|Q9LZS3|GLGB2_ARATH 1,4-alpha-glucan-branching enzyme 2-2, chloroplastic/amyloplastic OS=Arabidopsis thaliana GN=SBE2.2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 303 bits (776), Expect = 7e-81, Method: Compositional matrix adjust.
Identities = 171/409 (41%), Positives = 223/409 (54%), Gaps = 75/409 (18%)
Query: 798 GDFNNWNREEFAYKKLDFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHGHLLDRLSPWA 857
GDFNNWN + +FG WE+ LP N DGS + H S+VK+ + G + D + W
Sbjct: 195 GDFNNWNSNADIMTRNEFGVWEIFLPNNTDGSPAIPHGSRVKIRMDTPSG-IKDSIPAWI 253
Query: 858 TYVTEPPVVGHA-YEQRIWNPKPQDKHKWTSSKPKKPDNLKIYESHVGICTQEQKCASYE 916
+ + P G + ++P ++K+ + +PK+P +L+IYE+HVG+ + E +Y
Sbjct: 254 KFSVQAP--GEIPFNGIYYDPPEEEKYVFKHPQPKRPKSLRIYEAHVGMSSTEPMVNTYA 311
Query: 917 DFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAESHDQ 976
+F V+PRI K G N V + A E
Sbjct: 312 NFRDDVLPRIKKLGY---------------------NAVQIM----------AIQEHSYY 340
Query: 977 ALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTP 1036
A G H++ PS + GTPE+LK L+D H+ GL
Sbjct: 341 ASFG--------------YHVTNFFAPS-------SRCGTPEELKSLIDRAHELGLV--- 376
Query: 1037 EQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRL 1096
VL+D+VHSHASKN LDGLN FDGT A +FH GPRG H +WDSRL
Sbjct: 377 ----------------VLMDIVHSHASKNTLDGLNMFDGTDAHYFHSGPRGYHWMWDSRL 420
Query: 1097 FNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVD 1156
FNY EVLR+LLSN RW+L+EY+FDGFRFDGVTSM+Y +HG GF+G+Y EYFGL D
Sbjct: 421 FNYGSWEVLRYLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLSVGFTGNYTEYFGLETD 480
Query: 1157 TDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDYRL 1205
DA+ YLM+ N +H YPE IT+ EDVSGMP C PV +GG GFDYRL
Sbjct: 481 VDAVNYLMLVNDMIHGLYPEAITVGEDVSGMPTFCIPVQDGGVGFDYRL 529
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Catalyzes the formation of the alpha-1,6-glucosidic linkages in starch by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 4 EC: . EC: 1 EC: . EC: 1 EC: 8 |
| >sp|Q08047|GLGB_MAIZE 1,4-alpha-glucan-branching enzyme 2, chloroplastic/amyloplastic OS=Zea mays GN=SBE1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 295 bits (756), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 166/410 (40%), Positives = 222/410 (54%), Gaps = 75/410 (18%)
Query: 797 AGDFNNWNREEFAYKKLDFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHGHLLDRLSPW 856
GD NNW+ K +FG WE+ LP N DG+ + H S+VK+ + G + D + W
Sbjct: 190 VGDVNNWDPNADRMSKNEFGVWEIFLPNNADGTSPIPHGSRVKVRMDTPSG-IKDSIPAW 248
Query: 857 ATYVTEPPVVGHA-YEQRIWNPKPQDKHKWTSSKPKKPDNLKIYESHVGICTQEQKCASY 915
Y + P G Y+ ++P + K+ + ++PK+P +L+IYE+HVG+ + E K +Y
Sbjct: 249 IKYSVQAP--GEIPYDGIYYDPPEEVKYVFRHAQPKRPKSLRIYETHVGMSSPEPKINTY 306
Query: 916 EDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAESHD 975
+F V+PRI K G +N I+ + Y + Y
Sbjct: 307 VNFRDEVLPRIKKLG------------------YNAVQIMAIQEHSYY--GSFGY----- 341
Query: 976 QALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGT 1035
H++ PS +FGTPE LK L+D H+ GL
Sbjct: 342 --------------------HVTNFFAPS-------SRFGTPEDLKSLIDRAHELGLL-- 372
Query: 1036 PEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSR 1095
VL+DVVHSHAS N LDGLN FDGT +FH GPRG H +WDSR
Sbjct: 373 -----------------VLMDVVHSHASSNTLDGLNGFDGTDTHYFHSGPRGHHWMWDSR 415
Query: 1096 LFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNV 1155
LFNY EVLRFLLSN RW+L+EY+FDGFRFDGVTSM+Y +HG F+G+++EYFG
Sbjct: 416 LFNYGNWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVTFTGNFNEYFGFAT 475
Query: 1156 DTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDYRL 1205
D DA++YLM+ N +H YPE +TI EDVSGMP PV +GG GFDYR+
Sbjct: 476 DVDAVVYLMLVNDLIHGLYPEAVTIGEDVSGMPTFALPVHDGGVGFDYRM 525
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Catalyzes the formation of the alpha-1,6-glucosidic linkages in starch by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position. Zea mays (taxid: 4577) EC: 2 EC: . EC: 4 EC: . EC: 1 EC: . EC: 1 EC: 8 |
| >sp|Q6BXN1|GLGB_DEBHA 1,4-alpha-glucan-branching enzyme OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=GLC3 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 285 bits (728), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 170/421 (40%), Positives = 218/421 (51%), Gaps = 81/421 (19%)
Query: 794 VCAAGDFNNWNREEFAYKKL-DFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHGHLLDR 852
V GDFNNW+ K + DFG W L + P + + H S+ K+ + G + R
Sbjct: 89 VSLVGDFNNWDTNTHKLKPVNDFGLWSLTIKPTENNEFAVPHDSRYKISMVTASGERIYR 148
Query: 853 LSPWATYVTEPPVVGHAYEQRIWNPKPQDKHKWTSSKPK--KPDNLKIYESHVGICTQEQ 910
L PW T P + YE R WNP+P + +K+ +P+ D +KIYE+HVGI T E
Sbjct: 149 LCPWLKRAT-PSTENNLYEGRFWNPQPTETYKFKHERPRLESKDGIKIYEAHVGISTPEP 207
Query: 911 KCASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAY 970
K SY++F V+P I K G I+L+ A
Sbjct: 208 KVGSYKNFTTKVLPVIHKLGYNT----IQLM---------------------------AV 236
Query: 971 AESHDQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKA 1030
E A G + F+ + GTPE LK L
Sbjct: 237 MEHAYYASFGYQVTNFFAISSRF---------------------GTPEDLKEL------- 268
Query: 1031 GLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHP 1090
+DE H+ G+ VLLDVVHSH+SKNV DGLN F+GT FH G +G+H
Sbjct: 269 ------------IDEAHRLGIRVLLDVVHSHSSKNVEDGLNMFNGTDHYLFHGGTKGSHE 316
Query: 1091 LWDSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEY 1150
LWDSRLFNYS E LRFLLSNLR+Y+D ++FDGFRFDGVTSMLY +HG GFSG Y+EY
Sbjct: 317 LWDSRLFNYSNYETLRFLLSNLRFYIDVFKFDGFRFDGVTSMLYKHHGLSFGFSGDYNEY 376
Query: 1151 FGLN-VDTDALIYLMVANKFL-----HDKYPEIITIAEDVSGMPASCRPVTEGGTGFDYR 1204
F VD DA+ YLM+ +K L + + ++IAEDVSGMP C P+ +GG GFDYR
Sbjct: 377 FNSEWVDNDAITYLMLGHKLLDEISVRENNYKFVSIAEDVSGMPTLCLPIGQGGIGFDYR 436
Query: 1205 L 1205
L
Sbjct: 437 L 437
|
Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) (taxid: 284592) EC: 2 EC: . EC: 4 EC: . EC: 1 EC: . EC: 1 EC: 8 |
| >sp|Q04446|GLGB_HUMAN 1,4-alpha-glucan-branching enzyme OS=Homo sapiens GN=GBE1 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 270 bits (691), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 124/174 (71%), Positives = 143/174 (82%)
Query: 1033 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLW 1092
+GTPE+L+ LVD H G+ VLLDVVHSHASKN DGLN FDGT +C+FH GPRGTH LW
Sbjct: 263 YGTPEELQELVDTAHSMGIIVLLDVVHSHASKNSADGLNMFDGTDSCYFHSGPRGTHDLW 322
Query: 1093 DSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFG 1152
DSRLF YS E+LRFLLSN+RW+L+EY+FDGFRFDGVTSMLYH+HG G+GFSG Y EYFG
Sbjct: 323 DSRLFAYSSWEILRFLLSNIRWWLEEYRFDGFRFDGVTSMLYHHHGVGQGFSGDYSEYFG 382
Query: 1153 LNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDYRLV 1206
L VD DAL YLM+AN +H P+ ITIAEDVSGMPA C P+++GG GFDYRL
Sbjct: 383 LQVDEDALTYLMLANHLVHTLCPDSITIAEDVSGMPALCSPISQGGGGFDYRLA 436
|
Required for sufficient glycogen accumulation. The alpha 1-6 branches of glycogen play an important role in increasing the solubility of the molecule and, consequently, in reducing the osmotic pressure within cells. Homo sapiens (taxid: 9606) EC: 2 EC: . EC: 4 EC: . EC: 1 EC: . EC: 1 EC: 8 |
| >sp|Q6EAS5|GLGB_HORSE 1,4-alpha-glucan-branching enzyme OS=Equus caballus GN=GBE1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 268 bits (686), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 126/174 (72%), Positives = 141/174 (81%)
Query: 1033 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLW 1092
+GTPE+LK LVD H G+ VLLDVVHSHASKN DGLN FDGT +C+FH GPRGTH LW
Sbjct: 260 YGTPEELKELVDTAHSMGITVLLDVVHSHASKNSEDGLNMFDGTDSCYFHSGPRGTHDLW 319
Query: 1093 DSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFG 1152
DSRLF YS EVLRFLLSN+RW+L+EY FDGFRFDGVTSMLYH+HG G FSG Y EYFG
Sbjct: 320 DSRLFIYSSWEVLRFLLSNIRWWLEEYGFDGFRFDGVTSMLYHHHGIGASFSGDYHEYFG 379
Query: 1153 LNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDYRLV 1206
L VD DAL YLM+AN +H YP+ ITIAEDVSGMPA C P+++GG GFDYRL
Sbjct: 380 LQVDEDALTYLMLANHLVHTLYPDSITIAEDVSGMPALCSPISQGGGGFDYRLA 433
|
Required for sufficient glycogen accumulation. The alpha 1-6 branches of glycogen play an important role in increasing the solubility of the molecule and, consequently, in reducing the osmotic pressure within cells. Equus caballus (taxid: 9796) EC: 2 EC: . EC: 4 EC: . EC: 1 EC: . EC: 1 EC: 8 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1276 | ||||||
| 380026836 | 694 | PREDICTED: LOW QUALITY PROTEIN: 1,4-alph | 0.265 | 0.488 | 0.526 | 1e-116 | |
| 383863554 | 692 | PREDICTED: 1,4-alpha-glucan-branching en | 0.264 | 0.488 | 0.528 | 1e-116 | |
| 350410058 | 692 | PREDICTED: 1,4-alpha-glucan-branching en | 0.264 | 0.488 | 0.528 | 1e-115 | |
| 322785359 | 691 | hypothetical protein SINV_12923 [Solenop | 0.266 | 0.492 | 0.518 | 1e-113 | |
| 332023850 | 697 | 1,4-alpha-glucan-branching enzyme [Acrom | 0.266 | 0.487 | 0.515 | 1e-112 | |
| 91076104 | 692 | PREDICTED: similar to GA17312-PA [Tribol | 0.265 | 0.489 | 0.515 | 1e-111 | |
| 307197707 | 596 | 1,4-alpha-glucan-branching enzyme [Harpe | 0.267 | 0.572 | 0.530 | 1e-110 | |
| 195124622 | 690 | GI21261 [Drosophila mojavensis] gi|19391 | 0.267 | 0.494 | 0.513 | 1e-109 | |
| 195380988 | 690 | GJ20863 [Drosophila virilis] gi|19414403 | 0.267 | 0.494 | 0.508 | 1e-108 | |
| 198458865 | 690 | GA17312 [Drosophila pseudoobscura pseudo | 0.300 | 0.556 | 0.464 | 1e-108 |
| >gi|380026836|ref|XP_003697146.1| PREDICTED: LOW QUALITY PROTEIN: 1,4-alpha-glucan-branching enzyme-like [Apis florea] | Back alignment and taxonomy information |
|---|
Score = 426 bits (1094), Expect = e-116, Method: Compositional matrix adjust.
Identities = 216/410 (52%), Positives = 263/410 (64%), Gaps = 71/410 (17%)
Query: 797 AGDFNNWNREEFAYKKLDFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHGHLLDRLSPW 856
GDFN WNR +YKKLD+GKWEL LPPN DGSC + HLS++K++V++Q+ LL+RLSPW
Sbjct: 91 TGDFNGWNRTTNSYKKLDYGKWELHLPPNADGSCPIKHLSEIKIIVKDQNNELLERLSPW 150
Query: 857 ATYVTEPPVVGHAYEQRIWNPKPQDKHKWTSSKPKKPDNLKIYESHVGICTQEQKCASYE 916
ATYVT+ Y+QRIW P P++ +K+ SK KKP++L+IYE HVGI TQE K +Y
Sbjct: 151 ATYVTQDKSESATYKQRIWYPLPENVYKFKYSKQKKPESLRIYECHVGIATQELKIGTYL 210
Query: 917 DFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAESHDQ 976
+F + +IPRIVKQG I+L+ A E
Sbjct: 211 EFAKNIIPRIVKQGYNA----IQLM---------------------------AIMEHAYY 239
Query: 977 ALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTP 1036
A G + +F+ A ++GTPE+L
Sbjct: 240 ASFGYQVTSFYA---------------------ASSRYGTPEEL---------------- 262
Query: 1037 EQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRL 1096
K L+D H+ GLYVLLDVVHSHASKN LDGLN FDGT CFFH G RG HPLWDSRL
Sbjct: 263 ---KQLIDTAHQYGLYVLLDVVHSHASKNTLDGLNMFDGTDGCFFHSGNRGHHPLWDSRL 319
Query: 1097 FNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVD 1156
FNY E EVLRFLLSNLRWY++EY FDGFRFDGVTSMLYH+ G G+GF+GHY+EY+GLNVD
Sbjct: 320 FNYGEYEVLRFLLSNLRWYIEEYNFDGFRFDGVTSMLYHSRGFGQGFTGHYEEYYGLNVD 379
Query: 1157 TDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDYRLV 1206
+ ++YLM+AN LH YP +ITIAEDVSGMP CRP+TEGG GFDYRL
Sbjct: 380 VEGVVYLMLANYILHYLYPNMITIAEDVSGMPGVCRPITEGGLGFDYRLA 429
|
Source: Apis florea Species: Apis florea Genus: Apis Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|383863554|ref|XP_003707245.1| PREDICTED: 1,4-alpha-glucan-branching enzyme-like [Megachile rotundata] | Back alignment and taxonomy information |
|---|
Score = 425 bits (1093), Expect = e-116, Method: Compositional matrix adjust.
Identities = 216/409 (52%), Positives = 263/409 (64%), Gaps = 71/409 (17%)
Query: 797 AGDFNNWNREEFAYKKLDFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHGHLLDRLSPW 856
GDFNNWN+ +YKKL++GKWEL LPPN DGSC + HLS+VK++V++ + LL+RLSPW
Sbjct: 91 TGDFNNWNKTANSYKKLEYGKWELYLPPNADGSCPIKHLSEVKIIVKDHNNELLERLSPW 150
Query: 857 ATYVTEPPVVGHAYEQRIWNPKPQDKHKWTSSKPKKPDNLKIYESHVGICTQEQKCASYE 916
A YVT+ Y+QRIW+P ++ +++ KPKKP++L+IYE HVGI TQE K +Y
Sbjct: 151 ANYVTQNRAESATYKQRIWHPLSKNTYRFKYPKPKKPESLRIYECHVGIATQELKVGTYL 210
Query: 917 DFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAESHDQ 976
+F + VIPRIVKQG I+L+ A E
Sbjct: 211 EFAKNVIPRIVKQGYNA----IQLM---------------------------AIMEHAYY 239
Query: 977 ALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTP 1036
A G + +F+ A ++GTPE+LK L+D H+ GLF
Sbjct: 240 ASFGYQVTSFYA---------------------ASSRYGTPEELKELIDVAHEHGLF--- 275
Query: 1037 EQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRL 1096
VLLD+VHSHASKN LDGLN FDGT CFFH G RG HPLWDSRL
Sbjct: 276 ----------------VLLDMVHSHASKNTLDGLNMFDGTDGCFFHAGNRGQHPLWDSRL 319
Query: 1097 FNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVD 1156
FNY E EVLRFLLSNLRWY+DEY FDGFRFDGVTSMLYH+ G G+GFSGHYDEY+GLNVD
Sbjct: 320 FNYGEYEVLRFLLSNLRWYIDEYGFDGFRFDGVTSMLYHSRGFGQGFSGHYDEYYGLNVD 379
Query: 1157 TDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDYRL 1205
+ ++YLM+AN LH YPEI+TIAEDVSGMP CRPV+EGG GFDYRL
Sbjct: 380 VEGVVYLMLANHMLHHLYPEIVTIAEDVSGMPGVCRPVSEGGVGFDYRL 428
|
Source: Megachile rotundata Species: Megachile rotundata Genus: Megachile Family: Megachilidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|350410058|ref|XP_003488932.1| PREDICTED: 1,4-alpha-glucan-branching enzyme-like [Bombus impatiens] | Back alignment and taxonomy information |
|---|
Score = 424 bits (1090), Expect = e-115, Method: Compositional matrix adjust.
Identities = 216/409 (52%), Positives = 263/409 (64%), Gaps = 71/409 (17%)
Query: 798 GDFNNWNREEFAYKKLDFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHGHLLDRLSPWA 857
GDFN WN+ +YKKLD+GKWEL LPPN DGSC + HLS+VK++V++ + LL+RLSPWA
Sbjct: 92 GDFNGWNKTANSYKKLDYGKWELHLPPNADGSCPIKHLSEVKIIVKDHNNELLERLSPWA 151
Query: 858 TYVTEPPVVGHAYEQRIWNPKPQDKHKWTSSKPKKPDNLKIYESHVGICTQEQKCASYED 917
TYVT+ Y+QRIW+P ++ +K+ SKPKKP++L+IYE HVGI T+E K +Y +
Sbjct: 152 TYVTQNRAESVTYKQRIWHPSSENVYKFKYSKPKKPESLRIYECHVGIATEELKVGTYLE 211
Query: 918 FVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAESHDQA 977
F +IPRIVKQG I+L+ A E A
Sbjct: 212 FAEKIIPRIVKQGYNA----IQLM---------------------------AIMEHAYYA 240
Query: 978 LVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPE 1037
G + +F+ A ++GTPE+L
Sbjct: 241 SFGYQVTSFYA---------------------ASSRYGTPEEL----------------- 262
Query: 1038 QLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRLF 1097
K L+D H+ GLYVLLD+V SHASKN LDGLN FDGT ACFFH G RG HPLWDSRLF
Sbjct: 263 --KQLIDTAHQHGLYVLLDMVQSHASKNTLDGLNMFDGTDACFFHAGNRGQHPLWDSRLF 320
Query: 1098 NYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDT 1157
NY E EVLRFLLSNLRWY++EY FDGFRFDGVTSMLYH+ G G+GFSGHYDEY+GLNVD
Sbjct: 321 NYGEYEVLRFLLSNLRWYIEEYNFDGFRFDGVTSMLYHSRGFGQGFSGHYDEYYGLNVDV 380
Query: 1158 DALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDYRLV 1206
+ ++YLM+AN LH YPEI+TIAEDVSGMP CRP+TEGG GFDYRL
Sbjct: 381 EGVVYLMLANHMLHCLYPEIVTIAEDVSGMPGVCRPITEGGIGFDYRLA 429
|
Source: Bombus impatiens Species: Bombus impatiens Genus: Bombus Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|322785359|gb|EFZ12033.1| hypothetical protein SINV_12923 [Solenopsis invicta] | Back alignment and taxonomy information |
|---|
Score = 417 bits (1071), Expect = e-113, Method: Compositional matrix adjust.
Identities = 215/415 (51%), Positives = 264/415 (63%), Gaps = 75/415 (18%)
Query: 794 VCAAGDFNNWNREEFAYKKLDFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHGHLLDRL 853
V G+FNNW + YKKL++GKWEL LPPN DGSC L H S+VKL++++ + LL+RL
Sbjct: 88 VFLTGEFNNWQKTAVPYKKLEYGKWELHLPPNTDGSCPLKHNSEVKLIIKSHNNELLERL 147
Query: 854 SPWATYVTEPP--VVGHAYEQRIWNPKPQDKHKWTSSKPKKPDNLKIYESHVGICTQEQK 911
SPWATYVT+ P G Y+QRIW+ P++++K+ KPK+P++L+IYE HVGI TQE +
Sbjct: 148 SPWATYVTQKPDKSEGTTYKQRIWH--PENRYKFKHPKPKRPESLRIYECHVGIATQEFR 205
Query: 912 CASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYA 971
+Y +F R VIPRIV+QG N + + A
Sbjct: 206 VGTYLEFARDVIPRIVRQGY---------------------NTIQVM----------AIM 234
Query: 972 ESHDQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAG 1031
E A G + +F+ + ++G PE+L
Sbjct: 235 EHAYYASFGYQVTSFYAV---------------------SSRYGNPEEL----------- 262
Query: 1032 LFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPL 1091
K LVD H+ GLYVLLDVVHSHASKN LDGLN FDGT ACFFH G RG H L
Sbjct: 263 --------KELVDVAHQHGLYVLLDVVHSHASKNTLDGLNMFDGTDACFFHSGARGEHSL 314
Query: 1092 WDSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYF 1151
WDSRLFNY+E EVLRFLLSNLRWY++EY FDGFRFDGVTSMLYH+ G G+GFSGHYDEY+
Sbjct: 315 WDSRLFNYAEYEVLRFLLSNLRWYIEEYGFDGFRFDGVTSMLYHSRGLGQGFSGHYDEYY 374
Query: 1152 GLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDYRLV 1206
GLNVD + ++YLM+AN LH+ YPEI+TIAEDVSGMP CRPV EGG GFDYRL
Sbjct: 375 GLNVDVEGIVYLMLANHMLHEIYPEIVTIAEDVSGMPGVCRPVAEGGVGFDYRLA 429
|
Source: Solenopsis invicta Species: Solenopsis invicta Genus: Solenopsis Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|332023850|gb|EGI64074.1| 1,4-alpha-glucan-branching enzyme [Acromyrmex echinatior] | Back alignment and taxonomy information |
|---|
Score = 412 bits (1060), Expect = e-112, Method: Compositional matrix adjust.
Identities = 214/415 (51%), Positives = 263/415 (63%), Gaps = 75/415 (18%)
Query: 794 VCAAGDFNNWNREEFAYKKLDFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHGHLLDRL 853
V G+FNNW + YKKL++GKWEL LPPN DGSC L H S++KL++++ + LL+RL
Sbjct: 88 VFLTGEFNNWQQTATPYKKLEYGKWELHLPPNADGSCPLKHNSEIKLIIKSHNNELLERL 147
Query: 854 SPWATYVTEPP--VVGHAYEQRIWNPKPQDKHKWTSSKPKKPDNLKIYESHVGICTQEQK 911
SPWATYVT+ P G Y+QRIW+ P++ +K+ KPK+P++L+IYE H+GI TQE +
Sbjct: 148 SPWATYVTQKPDKSEGITYKQRIWH--PENTYKFKHPKPKRPESLRIYECHIGIGTQECR 205
Query: 912 CASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYA 971
+Y +F R VIPRIVKQG N + + A
Sbjct: 206 VGTYLEFARDVIPRIVKQGY---------------------NTIQVM----------AIM 234
Query: 972 ESHDQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAG 1031
E A G + +F+ + ++G PE+L
Sbjct: 235 EHAYYASFGYQVTSFYAV---------------------SSRYGNPEEL----------- 262
Query: 1032 LFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPL 1091
K LVD H+ GLYVLLDVVHSHASKN LDGLN FDGT ACFFH G RG H L
Sbjct: 263 --------KELVDVAHQHGLYVLLDVVHSHASKNTLDGLNMFDGTDACFFHSGSRGEHSL 314
Query: 1092 WDSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYF 1151
WDSRLFNY+E EVLRFLLSNLRWY++EY FDGFRFDGVTSMLYH+ G G+GFSGHYDEY+
Sbjct: 315 WDSRLFNYAEYEVLRFLLSNLRWYIEEYGFDGFRFDGVTSMLYHSRGLGQGFSGHYDEYY 374
Query: 1152 GLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDYRLV 1206
GLNVD + ++YLM+AN LH+ YPEI+TIAEDVSGMP CRPV EGG GFDYRL
Sbjct: 375 GLNVDVEGIVYLMLANHMLHEIYPEIVTIAEDVSGMPGVCRPVAEGGMGFDYRLA 429
|
Source: Acromyrmex echinatior Species: Acromyrmex echinatior Genus: Acromyrmex Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|91076104|ref|XP_968648.1| PREDICTED: similar to GA17312-PA [Tribolium castaneum] gi|270014582|gb|EFA11030.1| hypothetical protein TcasGA2_TC004619 [Tribolium castaneum] | Back alignment and taxonomy information |
|---|
Score = 410 bits (1053), Expect = e-111, Method: Compositional matrix adjust.
Identities = 212/411 (51%), Positives = 259/411 (63%), Gaps = 72/411 (17%)
Query: 797 AGDFNNWNREEFAYKKLDFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHGHLLDRLSPW 856
GDFN WNR+ YKKL+FGKWELV+PP PDGSC + HLS+VK+VV Q G DRLSP+
Sbjct: 91 TGDFNGWNRDSHRYKKLEFGKWELVIPPKPDGSCAIPHLSEVKVVVETQSGTKEDRLSPY 150
Query: 857 ATYVTEPPV-VGHAYEQRIWNPKPQDKHKWTSSKPKKPDNLKIYESHVGICTQEQKCASY 915
ATYV EPP G Y+Q+ WNP +K+++ S+P KP L+IYE HVGI T E K SY
Sbjct: 151 ATYVVEPPKDQGTIYKQKFWNPPNSEKYEFRHSRPAKPKGLRIYECHVGIATSELKVGSY 210
Query: 916 EDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAESHD 975
++F ++PRIVKQG I+L+ A E
Sbjct: 211 DNFTDNILPRIVKQGYNT----IQLM---------------------------AIMEHAY 239
Query: 976 QALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGT 1035
A G + +F+ A ++GTPEQL
Sbjct: 240 YASFGYQVTSFYA---------------------ASSRYGTPEQL--------------- 263
Query: 1036 PEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSR 1095
K L+D H+ GL VLLD+VHSHASKNVLDGLN+FDGT +CFFH G RG H LWDSR
Sbjct: 264 ----KRLIDRAHELGLTVLLDLVHSHASKNVLDGLNQFDGTDSCFFHAGARGEHSLWDSR 319
Query: 1096 LFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNV 1155
LFNY E EV+RFLLSN+RWY++EY+FDGFRFDGVTSMLYH+ G G+GFSG+Y+EYFGLNV
Sbjct: 320 LFNYQEFEVMRFLLSNIRWYMEEYKFDGFRFDGVTSMLYHSRGIGQGFSGNYEEYFGLNV 379
Query: 1156 DTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDYRLV 1206
DT+ L+YLM+AN H P+ ITIAEDVSGMP +CRP++EG GFDYRL
Sbjct: 380 DTEGLVYLMLANHVAHHFNPDGITIAEDVSGMPGTCRPISEGCLGFDYRLA 430
|
Source: Tribolium castaneum Species: Tribolium castaneum Genus: Tribolium Family: Tenebrionidae Order: Coleoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|307197707|gb|EFN78864.1| 1,4-alpha-glucan-branching enzyme [Harpegnathos saltator] | Back alignment and taxonomy information |
|---|
Score = 405 bits (1042), Expect = e-110, Method: Compositional matrix adjust.
Identities = 220/415 (53%), Positives = 264/415 (63%), Gaps = 74/415 (17%)
Query: 794 VCAAGDFNNWNREEFAYKKLDFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHGHLLDRL 853
V GDFNNWNR +KKL++GKWEL LPPN DGSC + HLS+VK++++N H LL+RL
Sbjct: 88 VFLTGDFNNWNRTVTPFKKLEYGKWELRLPPNIDGSCSIKHLSEVKIIIKN-HNELLERL 146
Query: 854 SPWATYVTEPP--VVGHAYEQRIWNPKPQDKHKWTSSKPKKPDNLKIYESHVGICTQEQK 911
SPWATYVT+P G Y+QRIW+P P++ +K+ KPKKP++L+IYE HVGI TQE +
Sbjct: 147 SPWATYVTQPADKSEGTTYKQRIWHPSPENVYKFKHPKPKKPESLRIYECHVGISTQELR 206
Query: 912 CASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYA 971
+Y +F + +IPRI+KQG I+L+ A
Sbjct: 207 VGTYLEFAKNIIPRIIKQGYNA----IQLM---------------------------AIM 235
Query: 972 ESHDQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAG 1031
E A G + +F Y S P E+LK L+D H
Sbjct: 236 EHAYYASFGYQVTSF-------YAASSRYGTP--------------EELKELIDVAH--- 271
Query: 1032 LFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPL 1091
+ GLYVLLDVVHSHASKN LDGLN FDGT ACFFH G RG HPL
Sbjct: 272 ----------------QHGLYVLLDVVHSHASKNTLDGLNMFDGTDACFFHSGCRGEHPL 315
Query: 1092 WDSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYF 1151
WDSRLFNY E EVLRFLLSNLRWY++EY FDGFRFDG+TSMLYH+ G G+GFSGHYDEY+
Sbjct: 316 WDSRLFNYGEYEVLRFLLSNLRWYIEEYGFDGFRFDGITSMLYHSRGFGQGFSGHYDEYY 375
Query: 1152 GLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDYRLV 1206
GLNVD + ++YLM+AN LHD YPE+ITIAEDVSGMP CRPV EGG GFDYRL
Sbjct: 376 GLNVDVEGVVYLMIANHMLHDIYPEMITIAEDVSGMPGICRPVAEGGVGFDYRLA 430
|
Source: Harpegnathos saltator Species: Harpegnathos saltator Genus: Harpegnathos Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|195124622|ref|XP_002006790.1| GI21261 [Drosophila mojavensis] gi|193911858|gb|EDW10725.1| GI21261 [Drosophila mojavensis] | Back alignment and taxonomy information |
|---|
Score = 403 bits (1036), Expect = e-109, Method: Compositional matrix adjust.
Identities = 213/415 (51%), Positives = 257/415 (61%), Gaps = 74/415 (17%)
Query: 794 VCAAGDFNNWNREEFAYKKLDFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHGHLLDRL 853
V GDFNNW+ E YKKL FGKWEL LP NPDGS + HLS++K+++RNQHG LLDRL
Sbjct: 82 VYLTGDFNNWHWESHPYKKLPFGKWELHLPANPDGSAPIKHLSEIKVIIRNQHGQLLDRL 141
Query: 854 SPWATYVTEPPVV---GHAYEQRIWNPKPQDKHKWTSSKPKKPDNLKIYESHVGICTQEQ 910
SPWA YV +PP G Y+Q +W P ++++ +++P KP +L+IYE HVGI +QE
Sbjct: 142 SPWAKYVVQPPKSANQGVNYKQYVWQPPEGERYQRQNARPPKPKSLRIYECHVGIASQEP 201
Query: 911 KCASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAY 970
+ SY++F ++PRI +QG N + + +A
Sbjct: 202 RVGSYDEFADRIVPRIKRQGY---------------------NCI----------QVMAI 230
Query: 971 AESHDQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKA 1030
E A G + +F Y S +P EQLK ++D
Sbjct: 231 MEHAYYASFGYQVTSF-------YAASSRYGNP--------------EQLKRMIDVA--- 266
Query: 1031 GLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHP 1090
H GLYVLLDVVHSHASKNV DGLN+FDGT +CFFHDG RG H
Sbjct: 267 ----------------HAQGLYVLLDVVHSHASKNVQDGLNQFDGTNSCFFHDGARGEHA 310
Query: 1091 LWDSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEY 1150
LWDSRLFNY+E EVLRFLLSNLRW+ DEY FDG+RFDGVTSMLYH+ G GEGFSG Y+EY
Sbjct: 311 LWDSRLFNYTEYEVLRFLLSNLRWWHDEYNFDGYRFDGVTSMLYHSRGIGEGFSGDYNEY 370
Query: 1151 FGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDYRL 1205
FGLNVDTDAL YL +AN LH PE+ITIAEDVSGMP CRPV+EGG GFDYRL
Sbjct: 371 FGLNVDTDALNYLGLANYMLHKLDPEVITIAEDVSGMPTLCRPVSEGGIGFDYRL 425
|
Source: Drosophila mojavensis Species: Drosophila mojavensis Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|195380988|ref|XP_002049238.1| GJ20863 [Drosophila virilis] gi|194144035|gb|EDW60431.1| GJ20863 [Drosophila virilis] | Back alignment and taxonomy information |
|---|
Score = 400 bits (1027), Expect = e-108, Method: Compositional matrix adjust.
Identities = 211/415 (50%), Positives = 255/415 (61%), Gaps = 74/415 (17%)
Query: 794 VCAAGDFNNWNREEFAYKKLDFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHGHLLDRL 853
V GDFNNW+ E +KKL FGKWEL LP NPDGS + HLS++K+++RNQ G LLDRL
Sbjct: 82 VYLTGDFNNWHWESHPFKKLPFGKWELHLPANPDGSAPIKHLSEIKIIIRNQSGQLLDRL 141
Query: 854 SPWATYVTEPPVV---GHAYEQRIWNPKPQDKHKWTSSKPKKPDNLKIYESHVGICTQEQ 910
SPWA YV +PP G ++Q +W P ++++ S++P KP +L+IYE HVGI +QE
Sbjct: 142 SPWAKYVVQPPKSANQGVNFKQYVWQPPAGERYQRQSARPAKPKSLRIYECHVGIASQEP 201
Query: 911 KCASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAY 970
+ SY++F ++PRI +QG N + + A
Sbjct: 202 RVGSYDEFADRIVPRIKRQGY---------------------NCIQVM----------AI 230
Query: 971 AESHDQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKA 1030
E A G + +F Y S +P EQLK ++D H
Sbjct: 231 MEHAYYASFGYQVTSF-------YAASSRCGNP--------------EQLKRMIDVAH-- 267
Query: 1031 GLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHP 1090
GLYVLLDVVHSHASKNV DGLN+FDGT +CFFHDG RG H
Sbjct: 268 -----------------SQGLYVLLDVVHSHASKNVQDGLNQFDGTNSCFFHDGARGEHS 310
Query: 1091 LWDSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEY 1150
LWDSRLFNY+E EVLRFLLSNLRW+ DEY FDG+RFDGVTSMLYH+ G GEGFSG Y+EY
Sbjct: 311 LWDSRLFNYTEYEVLRFLLSNLRWWHDEYNFDGYRFDGVTSMLYHSRGIGEGFSGDYNEY 370
Query: 1151 FGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDYRL 1205
FGLNVDTDAL YL +AN LH PE+ITIAEDVSGMP CRPV+EGG GFDYRL
Sbjct: 371 FGLNVDTDALNYLGLANYMLHKLDPEVITIAEDVSGMPTLCRPVSEGGIGFDYRL 425
|
Source: Drosophila virilis Species: Drosophila virilis Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|198458865|ref|XP_001361183.2| GA17312 [Drosophila pseudoobscura pseudoobscura] gi|198136502|gb|EAL25760.2| GA17312 [Drosophila pseudoobscura pseudoobscura] | Back alignment and taxonomy information |
|---|
Score = 399 bits (1024), Expect = e-108, Method: Compositional matrix adjust.
Identities = 220/474 (46%), Positives = 273/474 (57%), Gaps = 90/474 (18%)
Query: 794 VCAAGDFNNWNREEFAYKKLDFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHGHLLDRL 853
V AGDFNNW+ E +KKL+FGKWEL LPPN DGS ++ HLS++K+++RN HLLDRL
Sbjct: 82 VYLAGDFNNWHWESHPFKKLEFGKWELHLPPNADGSPQIKHLSEIKIIIRNHSDHLLDRL 141
Query: 854 SPWATYVTEPP---VVGHAYEQRIWNPKPQDKHKWTSSKPKKPDNLKIYESHVGICTQEQ 910
SPWA YV +PP G Y+Q +W P ++++ S+P +P +L+IYE HVGI +QE
Sbjct: 142 SPWAKYVVQPPKEANQGVNYKQYVWQPPESERYQRQHSRPARPKSLRIYECHVGIASQEP 201
Query: 911 KCASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAY 970
+ +Y++F ++PRI +QG N + + +A
Sbjct: 202 RVGTYDEFADRIVPRIKRQGY---------------------NCI----------QVMAI 230
Query: 971 AESHDQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKA 1030
E A G + +F Y S +P EQLK ++D H
Sbjct: 231 MEHAYYASFGYQVTSF-------YAASSRCGNP--------------EQLKRMIDVAH-- 267
Query: 1031 GLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHP 1090
GLYVLLDVVHSHASKNV DGLN+FDGT +CFFHDG RG H
Sbjct: 268 -----------------SHGLYVLLDVVHSHASKNVQDGLNQFDGTNSCFFHDGARGEHS 310
Query: 1091 LWDSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEY 1150
LWDSRLFNY E EVLRFLLSNLRW+ DEY FDG+RFDGVTSMLYH+ G GEGFSG Y+EY
Sbjct: 311 LWDSRLFNYVEYEVLRFLLSNLRWWHDEYNFDGYRFDGVTSMLYHSRGIGEGFSGDYNEY 370
Query: 1151 FGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDYR------ 1204
FGLNVDTDAL YL +AN LH PE+ITIAEDVSGMP CRPV+EGG GFDYR
Sbjct: 371 FGLNVDTDALNYLGLANHMLHTLDPEVITIAEDVSGMPTLCRPVSEGGIGFDYRLGMAIP 430
Query: 1205 -----LVSLEGSALSALFDAAMNTTEERFKWLSADPGYVSTKHE---GDKVIIF 1250
L+ + ++ D T R W+ Y + + GDK I F
Sbjct: 431 DKWIELLKEQSDDQWSMGDVVHTLTNRR--WMENTVAYAESHDQALVGDKTIAF 482
|
Source: Drosophila pseudoobscura pseudoobscura Species: Drosophila pseudoobscura Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1276 | ||||||
| FB|FBgn0053138 | 685 | AGBE "1,4-Alpha-Glucan Branchi | 0.170 | 0.316 | 0.610 | 4.3e-133 | |
| ZFIN|ZDB-GENE-110914-16 | 630 | si:ch211-247m23.1 "si:ch211-24 | 0.135 | 0.274 | 0.722 | 1.8e-132 | |
| WB|WBGene00011409 | 681 | T04A8.7 [Caenorhabditis elegan | 0.134 | 0.252 | 0.686 | 2.4e-125 | |
| ZFIN|ZDB-GENE-110411-171 | 688 | si:ch211-213e17.1 "si:ch211-21 | 0.135 | 0.251 | 0.710 | 3.1e-121 | |
| UNIPROTKB|F1PX32 | 699 | GBE1 "Uncharacterized protein" | 0.135 | 0.247 | 0.722 | 2.9e-117 | |
| UNIPROTKB|E1C303 | 588 | GBE1 "Uncharacterized protein" | 0.135 | 0.294 | 0.705 | 1.1e-116 | |
| UNIPROTKB|Q04446 | 702 | GBE1 "1,4-alpha-glucan-branchi | 0.135 | 0.246 | 0.716 | 1.4e-114 | |
| UNIPROTKB|E9PGM4 | 661 | GBE1 "1,4-alpha-glucan-branchi | 0.135 | 0.261 | 0.716 | 1.4e-114 | |
| MGI|MGI:1921435 | 702 | Gbe1 "glucan (1,4-alpha-), bra | 0.135 | 0.246 | 0.739 | 3e-113 | |
| UNIPROTKB|G4NAD9 | 691 | MGG_03186 "1,4-alpha-glucan-br | 0.166 | 0.308 | 0.593 | 3.5e-113 |
| FB|FBgn0053138 AGBE "1,4-Alpha-Glucan Branching Enzyme" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 709 (254.6 bits), Expect = 4.3e-133, Sum P(4) = 4.3e-133
Identities = 141/231 (61%), Positives = 165/231 (71%)
Query: 1033 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLW 1092
+G PEQLK ++D H GL+VLLDVVHSHASKNV DGLN+FDGT +CFFHDG RG H LW
Sbjct: 248 YGNPEQLKRMIDVAHSHGLFVLLDVVHSHASKNVQDGLNQFDGTNSCFFHDGARGEHSLW 307
Query: 1093 DSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFG 1152
DSRLFNY E EVLRFLLSNLRW+ DEY FDG+RFDGVTSMLYH+ G GEGFSG Y+EYFG
Sbjct: 308 DSRLFNYVEYEVLRFLLSNLRWWHDEYNFDGYRFDGVTSMLYHSRGIGEGFSGDYNEYFG 367
Query: 1153 LNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDYRL-VSLEGS 1211
LNVDTDAL YL +AN LH IITIAEDVSGMP CRPV+EGG GFDYRL +++
Sbjct: 368 LNVDTDALNYLGLANHLLHTIDSRIITIAEDVSGMPTLCRPVSEGGIGFDYRLGMAIPDK 427
Query: 1212 ALSALFDAA---------MNTTEERFKWLSADPGYVSTKHE---GDKVIIF 1250
+ L + + ++T R +W+ Y + + GDK I F
Sbjct: 428 WIELLKEQSDDEWDMGNLVHTLTNR-RWMENTVAYAESHDQALVGDKTIAF 477
|
|
| ZFIN|ZDB-GENE-110914-16 si:ch211-247m23.1 "si:ch211-247m23.1" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 696 (250.1 bits), Expect = 1.8e-132, Sum P(4) = 1.8e-132
Identities = 125/173 (72%), Positives = 142/173 (82%)
Query: 1033 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLW 1092
+GTPE+LK L+D H G+ VLLDVVHSHASKN DGLN FDG+ +CFFH GPRG H LW
Sbjct: 248 YGTPEELKELIDVAHSLGIIVLLDVVHSHASKNTEDGLNLFDGSDSCFFHSGPRGEHSLW 307
Query: 1093 DSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFG 1152
DSRLFNYS EVLRFLLSNLRW+++EY+FDGFRFDGVTSMLYH+HG G GFSG Y+EYFG
Sbjct: 308 DSRLFNYSSWEVLRFLLSNLRWWMEEYKFDGFRFDGVTSMLYHHHGIGSGFSGDYNEYFG 367
Query: 1153 LNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDYRL 1205
L VD D+L+YLM+AN LH Y + ITIAEDVSGMP C PV +GG GFDYRL
Sbjct: 368 LQVDEDSLVYLMLANHILHTLYEDCITIAEDVSGMPTLCCPVQQGGLGFDYRL 420
|
|
| WB|WBGene00011409 T04A8.7 [Caenorhabditis elegans (taxid:6239)] | Back alignment and assigned GO terms |
|---|
Score = 669 (240.6 bits), Expect = 2.4e-125, Sum P(4) = 2.4e-125
Identities = 118/172 (68%), Positives = 142/172 (82%)
Query: 1034 GTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWD 1093
GTPE LKYLVD+ H G+++LLDVVHSHASKNV DGLN++DG+ +FHD RG H LWD
Sbjct: 245 GTPEDLKYLVDKAHSLGIFMLLDVVHSHASKNVEDGLNQWDGSNGGYFHDNARGYHNLWD 304
Query: 1094 SRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGL 1153
SRLF+Y++ E LRFLLSN+RW+++EY FDGFRFDGV+SM+YH+HG + F G Y YFGL
Sbjct: 305 SRLFDYTQTETLRFLLSNVRWWVEEYGFDGFRFDGVSSMIYHSHGMNDDFCGGYPMYFGL 364
Query: 1154 NVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDYRL 1205
N DTD+L+YLM+AN FLH KYP +ITIAE+VSGMP CRPV EGG GFDYRL
Sbjct: 365 NADTDSLVYLMLANDFLHKKYPFMITIAEEVSGMPGICRPVEEGGQGFDYRL 416
|
|
| ZFIN|ZDB-GENE-110411-171 si:ch211-213e17.1 "si:ch211-213e17.1" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 682 (245.1 bits), Expect = 3.1e-121, Sum P(4) = 3.1e-121
Identities = 123/173 (71%), Positives = 139/173 (80%)
Query: 1033 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLW 1092
FGTP+ LK+LVD H G+ VLLDVVHSHAS N DGLN FDGT +CFFH G RG H LW
Sbjct: 247 FGTPDDLKHLVDTAHSMGIAVLLDVVHSHASSNTEDGLNYFDGTDSCFFHGGSRGKHSLW 306
Query: 1093 DSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFG 1152
DSRLFNYS EVLRFLLSNLRW+++EY+FDGFRFDGVTSMLYH+HG FSG+Y EYFG
Sbjct: 307 DSRLFNYSSWEVLRFLLSNLRWWMEEYRFDGFRFDGVTSMLYHHHGIDTSFSGNYSEYFG 366
Query: 1153 LNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDYRL 1205
+ VD +ALIYLM+AN LH YP+ IT+AEDVSGMP CR + EGG GFDYRL
Sbjct: 367 MQVDENALIYLMLANHILHRLYPQCITVAEDVSGMPGLCRAIEEGGLGFDYRL 419
|
|
| UNIPROTKB|F1PX32 GBE1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 704 (252.9 bits), Expect = 2.9e-117, Sum P(3) = 2.9e-117
Identities = 125/173 (72%), Positives = 143/173 (82%)
Query: 1033 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLW 1092
+GTPE+LK L+D H G+ VLLDVVHSHASKN DGLN FDGT +C+FH GPRG H LW
Sbjct: 260 YGTPEELKELIDTAHSMGITVLLDVVHSHASKNSEDGLNMFDGTDSCYFHSGPRGNHDLW 319
Query: 1093 DSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFG 1152
DSRLF YS EVLRFLLSN+RW+L+EY FDGFRFDGVTSMLYH+HG GEGFSG Y EYFG
Sbjct: 320 DSRLFAYSSWEVLRFLLSNIRWWLEEYYFDGFRFDGVTSMLYHHHGMGEGFSGDYHEYFG 379
Query: 1153 LNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDYRL 1205
L VD DAL+YLM+AN +H YP+ IT+AEDVSGMPA C P+++GG GFDYRL
Sbjct: 380 LQVDEDALVYLMLANHLVHTLYPDSITVAEDVSGMPALCSPISQGGVGFDYRL 432
|
|
| UNIPROTKB|E1C303 GBE1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 673 (242.0 bits), Expect = 1.1e-116, Sum P(4) = 1.1e-116
Identities = 122/173 (70%), Positives = 144/173 (83%)
Query: 1033 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLW 1092
+GTP+ LK L+D H G+ VLLDVVHSHASKN DGLN+FDGT +CFFH GPRGTH +W
Sbjct: 249 YGTPDDLKELIDVAHSMGITVLLDVVHSHASKNSEDGLNKFDGTDSCFFHSGPRGTHRIW 308
Query: 1093 DSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFG 1152
DSRLF+Y+ EVLRFLLSNLR ++++Y FDGFRFDGVTSMLYH+HG G+ FSG Y+EYFG
Sbjct: 309 DSRLFDYANWEVLRFLLSNLRMWIEDYGFDGFRFDGVTSMLYHDHGIGKEFSGDYNEYFG 368
Query: 1153 LNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDYRL 1205
L+VD DAL YLM+AN ++ +P+ ITIAEDVSGMPA CRPV EGG GFDYRL
Sbjct: 369 LDVDEDALCYLMLANHMINFLHPDCITIAEDVSGMPALCRPVAEGGGGFDYRL 421
|
|
| UNIPROTKB|Q04446 GBE1 "1,4-alpha-glucan-branching enzyme" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 694 (249.4 bits), Expect = 1.4e-114, Sum P(3) = 1.4e-114
Identities = 124/173 (71%), Positives = 143/173 (82%)
Query: 1033 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLW 1092
+GTPE+L+ LVD H G+ VLLDVVHSHASKN DGLN FDGT +C+FH GPRGTH LW
Sbjct: 263 YGTPEELQELVDTAHSMGIIVLLDVVHSHASKNSADGLNMFDGTDSCYFHSGPRGTHDLW 322
Query: 1093 DSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFG 1152
DSRLF YS E+LRFLLSN+RW+L+EY+FDGFRFDGVTSMLYH+HG G+GFSG Y EYFG
Sbjct: 323 DSRLFAYSSWEILRFLLSNIRWWLEEYRFDGFRFDGVTSMLYHHHGVGQGFSGDYSEYFG 382
Query: 1153 LNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDYRL 1205
L VD DAL YLM+AN +H P+ ITIAEDVSGMPA C P+++GG GFDYRL
Sbjct: 383 LQVDEDALTYLMLANHLVHTLCPDSITIAEDVSGMPALCSPISQGGGGFDYRL 435
|
|
| UNIPROTKB|E9PGM4 GBE1 "1,4-alpha-glucan-branching enzyme" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 694 (249.4 bits), Expect = 1.4e-114, Sum P(3) = 1.4e-114
Identities = 124/173 (71%), Positives = 143/173 (82%)
Query: 1033 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLW 1092
+GTPE+L+ LVD H G+ VLLDVVHSHASKN DGLN FDGT +C+FH GPRGTH LW
Sbjct: 222 YGTPEELQELVDTAHSMGIIVLLDVVHSHASKNSADGLNMFDGTDSCYFHSGPRGTHDLW 281
Query: 1093 DSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFG 1152
DSRLF YS E+LRFLLSN+RW+L+EY+FDGFRFDGVTSMLYH+HG G+GFSG Y EYFG
Sbjct: 282 DSRLFAYSSWEILRFLLSNIRWWLEEYRFDGFRFDGVTSMLYHHHGVGQGFSGDYSEYFG 341
Query: 1153 LNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDYRL 1205
L VD DAL YLM+AN +H P+ ITIAEDVSGMPA C P+++GG GFDYRL
Sbjct: 342 LQVDEDALTYLMLANHLVHTLCPDSITIAEDVSGMPALCSPISQGGGGFDYRL 394
|
|
| MGI|MGI:1921435 Gbe1 "glucan (1,4-alpha-), branching enzyme 1" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 702 (252.2 bits), Expect = 3.0e-113, Sum P(3) = 3.0e-113
Identities = 128/173 (73%), Positives = 143/173 (82%)
Query: 1033 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLW 1092
+GTPE+LK LVD H G+ VLLDVVHSHASKN DGLN FDGT +C+FH GPRGTH LW
Sbjct: 263 YGTPEELKELVDTAHSMGIVVLLDVVHSHASKNSEDGLNMFDGTDSCYFHSGPRGTHDLW 322
Query: 1093 DSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFG 1152
DSRLF YS EVLRFLLSN+RW+L+EY FDGFRFDGVTSMLYH+HG G+GFSG Y+EYFG
Sbjct: 323 DSRLFIYSSWEVLRFLLSNIRWWLEEYCFDGFRFDGVTSMLYHHHGMGQGFSGDYNEYFG 382
Query: 1153 LNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDYRL 1205
L VD DALIYLM+AN H YP+ ITIAEDVSGMPA C P ++GG GFDYRL
Sbjct: 383 LQVDEDALIYLMLANHLAHTLYPDSITIAEDVSGMPALCSPTSQGGGGFDYRL 435
|
|
| UNIPROTKB|G4NAD9 MGG_03186 "1,4-alpha-glucan-branching enzyme" [Magnaporthe oryzae 70-15 (taxid:242507)] | Back alignment and assigned GO terms |
|---|
Score = 669 (240.6 bits), Expect = 3.5e-113, Sum P(4) = 3.5e-113
Identities = 130/219 (59%), Positives = 159/219 (72%)
Query: 1033 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLW 1092
+GTPE LK L+D H GL VLLDVVHSHASKNVLDG+NEFDGT +FH G +G H W
Sbjct: 256 YGTPEDLKELIDAAHGMGLTVLLDVVHSHASKNVLDGINEFDGTDHQYFHAGGKGRHDQW 315
Query: 1093 DSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFG 1152
DSRLFNY EVLRFLLSNLR+++DEYQFDGFRFDGVTSMLY +HG G GFSG Y EYFG
Sbjct: 316 DSRLFNYGHHEVLRFLLSNLRFWMDEYQFDGFRFDGVTSMLYLHHGMGTGFSGGYHEYFG 375
Query: 1153 LNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDYRLVSLEGSA 1212
+ D +AL+YLM+ANK LH+ YPE+I+IAEDVSGMP C P ++GG GFDYRL A
Sbjct: 376 PDADEEALVYLMLANKMLHELYPEVISIAEDVSGMPTLCLPWSDGGVGFDYRLAM----A 431
Query: 1213 LSALFDAAMNTTEERFKWLSADPGYVST-KHEGDKVIIF 1250
+ ++ + ++ +W AD + T + G+K I +
Sbjct: 432 IPDMWIKILKEKKDE-EWDMADICWTLTNRRHGEKTIAY 469
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 4th Layer | 2.4.1.18 | 0.737 |
| 3rd Layer | 2.4.1 | LOW CONFIDENCE prediction! |
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1276 | |||
| cd11321 | 406 | cd11321, AmyAc_bac_euk_BE, Alpha amylase catalytic | 1e-117 | |
| PLN02447 | 758 | PLN02447, PLN02447, 1,4-alpha-glucan-branching enz | 1e-100 | |
| PLN02960 | 897 | PLN02960, PLN02960, alpha-amylase | 3e-58 | |
| PLN03244 | 872 | PLN03244, PLN03244, alpha-amylase; Provisional | 4e-50 | |
| cd11321 | 406 | cd11321, AmyAc_bac_euk_BE, Alpha amylase catalytic | 7e-49 | |
| PLN02447 | 758 | PLN02447, PLN02447, 1,4-alpha-glucan-branching enz | 5e-44 | |
| cd11322 | 402 | cd11322, AmyAc_Glg_BE, Alpha amylase catalytic dom | 4e-42 | |
| COG0296 | 628 | COG0296, GlgB, 1,4-alpha-glucan branching enzyme [ | 2e-41 | |
| PRK12313 | 633 | PRK12313, PRK12313, glycogen branching enzyme; Pro | 2e-37 | |
| PRK05402 | 726 | PRK05402, PRK05402, glycogen branching enzyme; Pro | 2e-32 | |
| TIGR01515 | 618 | TIGR01515, branching_enzym, alpha-1,4-glucan:alpha | 7e-31 | |
| cd02854 | 95 | cd02854, E_set_GBE_euk_N, N-terminal Early set dom | 2e-30 | |
| PLN02447 | 758 | PLN02447, PLN02447, 1,4-alpha-glucan-branching enz | 4e-30 | |
| PRK12568 | 730 | PRK12568, PRK12568, glycogen branching enzyme; Pro | 2e-25 | |
| PRK14705 | 1224 | PRK14705, PRK14705, glycogen branching enzyme; Pro | 4e-25 | |
| cd11325 | 436 | cd11325, AmyAc_GTHase, Alpha amylase catalytic dom | 1e-22 | |
| PRK14706 | 639 | PRK14706, PRK14706, glycogen branching enzyme; Pro | 2e-19 | |
| PLN02960 | 897 | PLN02960, PLN02960, alpha-amylase | 4e-16 | |
| PLN02447 | 758 | PLN02447, PLN02447, 1,4-alpha-glucan-branching enz | 6e-15 | |
| cd11321 | 406 | cd11321, AmyAc_bac_euk_BE, Alpha amylase catalytic | 5e-14 | |
| TIGR02402 | 544 | TIGR02402, trehalose_TreZ, malto-oligosyltrehalose | 4e-13 | |
| PLN03244 | 872 | PLN03244, PLN03244, alpha-amylase; Provisional | 1e-12 | |
| cd11350 | 390 | cd11350, AmyAc_4, Alpha amylase catalytic domain f | 2e-12 | |
| PLN02447 | 758 | PLN02447, PLN02447, 1,4-alpha-glucan-branching enz | 1e-11 | |
| cd11313 | 336 | cd11313, AmyAc_arch_bac_AmyA, Alpha amylase cataly | 2e-10 | |
| COG0296 | 628 | COG0296, GlgB, 1,4-alpha-glucan branching enzyme [ | 2e-09 | |
| cd11338 | 389 | cd11338, AmyAc_CMD, Alpha amylase catalytic domain | 1e-07 | |
| pfam02806 | 92 | pfam02806, Alpha-amylase_C, Alpha amylase, C-termi | 1e-07 | |
| COG1523 | 697 | COG1523, PulA, Type II secretory pathway, pullulan | 2e-07 | |
| cd11326 | 433 | cd11326, AmyAc_Glg_debranch, Alpha amylase catalyt | 3e-07 | |
| PLN03244 | 872 | PLN03244, PLN03244, alpha-amylase; Provisional | 5e-07 | |
| pfam02922 | 83 | pfam02922, CBM_48, Carbohydrate-binding module 48 | 5e-07 | |
| cd11319 | 375 | cd11319, AmyAc_euk_AmyA, Alpha amylase catalytic d | 1e-06 | |
| TIGR02102 | 1111 | TIGR02102, pullulan_Gpos, pullulanase, extracellul | 2e-06 | |
| cd00551 | 260 | cd00551, AmyAc_family, Alpha amylase catalytic dom | 6e-06 | |
| cd11321 | 406 | cd11321, AmyAc_bac_euk_BE, Alpha amylase catalytic | 1e-05 | |
| PLN02960 | 897 | PLN02960, PLN02960, alpha-amylase | 1e-05 | |
| smart00642 | 166 | smart00642, Aamy, Alpha-amylase domain | 2e-05 | |
| PLN02447 | 758 | PLN02447, PLN02447, 1,4-alpha-glucan-branching enz | 3e-05 | |
| PRK14706 | 639 | PRK14706, PRK14706, glycogen branching enzyme; Pro | 3e-05 | |
| COG0366 | 505 | COG0366, AmyA, Glycosidases [Carbohydrate transpor | 3e-05 | |
| TIGR02104 | 605 | TIGR02104, pulA_typeI, pullulanase, type I | 4e-05 | |
| PRK05402 | 726 | PRK05402, PRK05402, glycogen branching enzyme; Pro | 8e-05 | |
| cd11352 | 443 | cd11352, AmyAc_5, Alpha amylase catalytic domain f | 1e-04 | |
| cd02855 | 105 | cd02855, E_set_GBE_prok_N, N-terminal Early set do | 2e-04 | |
| COG0296 | 628 | COG0296, GlgB, 1,4-alpha-glucan branching enzyme [ | 4e-04 | |
| TIGR02100 | 688 | TIGR02100, glgX_debranch, glycogen debranching enz | 4e-04 | |
| cd11316 | 403 | cd11316, AmyAc_bac2_AmyA, Alpha amylase catalytic | 4e-04 | |
| cd11332 | 481 | cd11332, AmyAc_OligoGlu_TS, Alpha amylase catalyti | 4e-04 | |
| PRK12313 | 633 | PRK12313, PRK12313, glycogen branching enzyme; Pro | 5e-04 | |
| cd11314 | 302 | cd11314, AmyAc_arch_bac_plant_AmyA, Alpha amylase | 5e-04 | |
| cd11341 | 406 | cd11341, AmyAc_Pullulanase_LD-like, Alpha amylase | 8e-04 | |
| cd11315 | 352 | cd11315, AmyAc_bac1_AmyA, Alpha amylase catalytic | 9e-04 | |
| TIGR01515 | 618 | TIGR01515, branching_enzym, alpha-1,4-glucan:alpha | 0.001 | |
| PRK09505 | 683 | PRK09505, malS, alpha-amylase; Reviewed | 0.001 | |
| cd11348 | 429 | cd11348, AmyAc_2, Alpha amylase catalytic domain f | 0.001 | |
| cd11321 | 406 | cd11321, AmyAc_bac_euk_BE, Alpha amylase catalytic | 0.002 | |
| cd11321 | 406 | cd11321, AmyAc_bac_euk_BE, Alpha amylase catalytic | 0.002 | |
| cd11321 | 406 | cd11321, AmyAc_bac_euk_BE, Alpha amylase catalytic | 0.002 | |
| cd11321 | 406 | cd11321, AmyAc_bac_euk_BE, Alpha amylase catalytic | 0.002 | |
| cd11321 | 406 | cd11321, AmyAc_bac_euk_BE, Alpha amylase catalytic | 0.002 | |
| cd11321 | 406 | cd11321, AmyAc_bac_euk_BE, Alpha amylase catalytic | 0.002 | |
| cd11321 | 406 | cd11321, AmyAc_bac_euk_BE, Alpha amylase catalytic | 0.002 | |
| cd11321 | 406 | cd11321, AmyAc_bac_euk_BE, Alpha amylase catalytic | 0.002 | |
| cd11321 | 406 | cd11321, AmyAc_bac_euk_BE, Alpha amylase catalytic | 0.002 | |
| cd11321 | 406 | cd11321, AmyAc_bac_euk_BE, Alpha amylase catalytic | 0.002 | |
| cd11321 | 406 | cd11321, AmyAc_bac_euk_BE, Alpha amylase catalytic | 0.002 | |
| cd11321 | 406 | cd11321, AmyAc_bac_euk_BE, Alpha amylase catalytic | 0.002 | |
| cd11321 | 406 | cd11321, AmyAc_bac_euk_BE, Alpha amylase catalytic | 0.002 | |
| cd11321 | 406 | cd11321, AmyAc_bac_euk_BE, Alpha amylase catalytic | 0.002 | |
| cd11321 | 406 | cd11321, AmyAc_bac_euk_BE, Alpha amylase catalytic | 0.002 | |
| cd11321 | 406 | cd11321, AmyAc_bac_euk_BE, Alpha amylase catalytic | 0.002 | |
| cd11321 | 406 | cd11321, AmyAc_bac_euk_BE, Alpha amylase catalytic | 0.002 | |
| cd11321 | 406 | cd11321, AmyAc_bac_euk_BE, Alpha amylase catalytic | 0.002 | |
| cd11321 | 406 | cd11321, AmyAc_bac_euk_BE, Alpha amylase catalytic | 0.002 | |
| cd11321 | 406 | cd11321, AmyAc_bac_euk_BE, Alpha amylase catalytic | 0.002 | |
| cd11321 | 406 | cd11321, AmyAc_bac_euk_BE, Alpha amylase catalytic | 0.002 | |
| cd11321 | 406 | cd11321, AmyAc_bac_euk_BE, Alpha amylase catalytic | 0.002 | |
| cd11321 | 406 | cd11321, AmyAc_bac_euk_BE, Alpha amylase catalytic | 0.002 | |
| cd11321 | 406 | cd11321, AmyAc_bac_euk_BE, Alpha amylase catalytic | 0.002 | |
| cd11321 | 406 | cd11321, AmyAc_bac_euk_BE, Alpha amylase catalytic | 0.002 | |
| cd11321 | 406 | cd11321, AmyAc_bac_euk_BE, Alpha amylase catalytic | 0.002 | |
| cd11321 | 406 | cd11321, AmyAc_bac_euk_BE, Alpha amylase catalytic | 0.002 | |
| cd11321 | 406 | cd11321, AmyAc_bac_euk_BE, Alpha amylase catalytic | 0.002 | |
| cd11321 | 406 | cd11321, AmyAc_bac_euk_BE, Alpha amylase catalytic | 0.002 | |
| cd11321 | 406 | cd11321, AmyAc_bac_euk_BE, Alpha amylase catalytic | 0.002 | |
| cd11321 | 406 | cd11321, AmyAc_bac_euk_BE, Alpha amylase catalytic | 0.002 | |
| cd11321 | 406 | cd11321, AmyAc_bac_euk_BE, Alpha amylase catalytic | 0.002 | |
| cd11321 | 406 | cd11321, AmyAc_bac_euk_BE, Alpha amylase catalytic | 0.002 | |
| cd11321 | 406 | cd11321, AmyAc_bac_euk_BE, Alpha amylase catalytic | 0.002 | |
| PRK05402 | 726 | PRK05402, PRK05402, glycogen branching enzyme; Pro | 0.002 | |
| PRK05402 | 726 | PRK05402, PRK05402, glycogen branching enzyme; Pro | 0.002 | |
| PRK05402 | 726 | PRK05402, PRK05402, glycogen branching enzyme; Pro | 0.002 | |
| PRK05402 | 726 | PRK05402, PRK05402, glycogen branching enzyme; Pro | 0.002 | |
| PRK05402 | 726 | PRK05402, PRK05402, glycogen branching enzyme; Pro | 0.002 | |
| PRK05402 | 726 | PRK05402, PRK05402, glycogen branching enzyme; Pro | 0.002 | |
| PRK05402 | 726 | PRK05402, PRK05402, glycogen branching enzyme; Pro | 0.002 | |
| PRK05402 | 726 | PRK05402, PRK05402, glycogen branching enzyme; Pro | 0.002 | |
| PRK05402 | 726 | PRK05402, PRK05402, glycogen branching enzyme; Pro | 0.002 | |
| PRK05402 | 726 | PRK05402, PRK05402, glycogen branching enzyme; Pro | 0.002 | |
| PRK05402 | 726 | PRK05402, PRK05402, glycogen branching enzyme; Pro | 0.002 | |
| PRK05402 | 726 | PRK05402, PRK05402, glycogen branching enzyme; Pro | 0.002 | |
| PRK05402 | 726 | PRK05402, PRK05402, glycogen branching enzyme; Pro | 0.002 | |
| PRK05402 | 726 | PRK05402, PRK05402, glycogen branching enzyme; Pro | 0.002 | |
| PRK05402 | 726 | PRK05402, PRK05402, glycogen branching enzyme; Pro | 0.002 | |
| PRK05402 | 726 | PRK05402, PRK05402, glycogen branching enzyme; Pro | 0.002 | |
| PRK05402 | 726 | PRK05402, PRK05402, glycogen branching enzyme; Pro | 0.002 | |
| PRK05402 | 726 | PRK05402, PRK05402, glycogen branching enzyme; Pro | 0.002 | |
| PRK05402 | 726 | PRK05402, PRK05402, glycogen branching enzyme; Pro | 0.002 | |
| PRK05402 | 726 | PRK05402, PRK05402, glycogen branching enzyme; Pro | 0.002 | |
| PRK05402 | 726 | PRK05402, PRK05402, glycogen branching enzyme; Pro | 0.002 | |
| PRK05402 | 726 | PRK05402, PRK05402, glycogen branching enzyme; Pro | 0.002 | |
| PRK05402 | 726 | PRK05402, PRK05402, glycogen branching enzyme; Pro | 0.002 | |
| PRK05402 | 726 | PRK05402, PRK05402, glycogen branching enzyme; Pro | 0.002 | |
| PRK05402 | 726 | PRK05402, PRK05402, glycogen branching enzyme; Pro | 0.002 | |
| PRK05402 | 726 | PRK05402, PRK05402, glycogen branching enzyme; Pro | 0.002 | |
| PRK05402 | 726 | PRK05402, PRK05402, glycogen branching enzyme; Pro | 0.002 | |
| PRK05402 | 726 | PRK05402, PRK05402, glycogen branching enzyme; Pro | 0.002 | |
| PRK05402 | 726 | PRK05402, PRK05402, glycogen branching enzyme; Pro | 0.002 | |
| PRK05402 | 726 | PRK05402, PRK05402, glycogen branching enzyme; Pro | 0.002 | |
| PRK05402 | 726 | PRK05402, PRK05402, glycogen branching enzyme; Pro | 0.002 | |
| PRK05402 | 726 | PRK05402, PRK05402, glycogen branching enzyme; Pro | 0.002 | |
| PRK05402 | 726 | PRK05402, PRK05402, glycogen branching enzyme; Pro | 0.002 | |
| PRK05402 | 726 | PRK05402, PRK05402, glycogen branching enzyme; Pro | 0.002 | |
| PRK05402 | 726 | PRK05402, PRK05402, glycogen branching enzyme; Pro | 0.002 | |
| PRK14705 | 1224 | PRK14705, PRK14705, glycogen branching enzyme; Pro | 0.002 | |
| cd11330 | 472 | cd11330, AmyAc_OligoGlu, Alpha amylase catalytic d | 0.002 | |
| PRK03705 | 658 | PRK03705, PRK03705, glycogen debranching enzyme; P | 0.003 | |
| cd11322 | 402 | cd11322, AmyAc_Glg_BE, Alpha amylase catalytic dom | 0.004 | |
| cd11322 | 402 | cd11322, AmyAc_Glg_BE, Alpha amylase catalytic dom | 0.004 | |
| cd11322 | 402 | cd11322, AmyAc_Glg_BE, Alpha amylase catalytic dom | 0.004 | |
| cd11322 | 402 | cd11322, AmyAc_Glg_BE, Alpha amylase catalytic dom | 0.004 | |
| cd11322 | 402 | cd11322, AmyAc_Glg_BE, Alpha amylase catalytic dom | 0.004 | |
| cd11322 | 402 | cd11322, AmyAc_Glg_BE, Alpha amylase catalytic dom | 0.004 | |
| cd11322 | 402 | cd11322, AmyAc_Glg_BE, Alpha amylase catalytic dom | 0.004 | |
| cd11322 | 402 | cd11322, AmyAc_Glg_BE, Alpha amylase catalytic dom | 0.004 | |
| cd11322 | 402 | cd11322, AmyAc_Glg_BE, Alpha amylase catalytic dom | 0.004 | |
| cd11322 | 402 | cd11322, AmyAc_Glg_BE, Alpha amylase catalytic dom | 0.004 | |
| cd11322 | 402 | cd11322, AmyAc_Glg_BE, Alpha amylase catalytic dom | 0.004 | |
| cd11322 | 402 | cd11322, AmyAc_Glg_BE, Alpha amylase catalytic dom | 0.004 | |
| cd11322 | 402 | cd11322, AmyAc_Glg_BE, Alpha amylase catalytic dom | 0.004 | |
| cd11322 | 402 | cd11322, AmyAc_Glg_BE, Alpha amylase catalytic dom | 0.004 | |
| cd11322 | 402 | cd11322, AmyAc_Glg_BE, Alpha amylase catalytic dom | 0.004 | |
| cd11322 | 402 | cd11322, AmyAc_Glg_BE, Alpha amylase catalytic dom | 0.004 | |
| cd11322 | 402 | cd11322, AmyAc_Glg_BE, Alpha amylase catalytic dom | 0.004 | |
| cd11322 | 402 | cd11322, AmyAc_Glg_BE, Alpha amylase catalytic dom | 0.004 | |
| cd11322 | 402 | cd11322, AmyAc_Glg_BE, Alpha amylase catalytic dom | 0.004 | |
| cd11322 | 402 | cd11322, AmyAc_Glg_BE, Alpha amylase catalytic dom | 0.004 | |
| cd11322 | 402 | cd11322, AmyAc_Glg_BE, Alpha amylase catalytic dom | 0.004 | |
| cd11322 | 402 | cd11322, AmyAc_Glg_BE, Alpha amylase catalytic dom | 0.004 | |
| cd11322 | 402 | cd11322, AmyAc_Glg_BE, Alpha amylase catalytic dom | 0.004 | |
| cd11322 | 402 | cd11322, AmyAc_Glg_BE, Alpha amylase catalytic dom | 0.004 | |
| cd11322 | 402 | cd11322, AmyAc_Glg_BE, Alpha amylase catalytic dom | 0.004 | |
| cd11322 | 402 | cd11322, AmyAc_Glg_BE, Alpha amylase catalytic dom | 0.004 | |
| cd11322 | 402 | cd11322, AmyAc_Glg_BE, Alpha amylase catalytic dom | 0.004 | |
| cd11322 | 402 | cd11322, AmyAc_Glg_BE, Alpha amylase catalytic dom | 0.004 | |
| cd11322 | 402 | cd11322, AmyAc_Glg_BE, Alpha amylase catalytic dom | 0.004 | |
| cd11322 | 402 | cd11322, AmyAc_Glg_BE, Alpha amylase catalytic dom | 0.004 | |
| cd11322 | 402 | cd11322, AmyAc_Glg_BE, Alpha amylase catalytic dom | 0.004 | |
| cd11322 | 402 | cd11322, AmyAc_Glg_BE, Alpha amylase catalytic dom | 0.004 | |
| cd11322 | 402 | cd11322, AmyAc_Glg_BE, Alpha amylase catalytic dom | 0.004 | |
| cd11322 | 402 | cd11322, AmyAc_Glg_BE, Alpha amylase catalytic dom | 0.004 | |
| cd11322 | 402 | cd11322, AmyAc_Glg_BE, Alpha amylase catalytic dom | 0.004 | |
| COG0296 | 628 | COG0296, GlgB, 1,4-alpha-glucan branching enzyme [ | 0.004 | |
| COG0296 | 628 | COG0296, GlgB, 1,4-alpha-glucan branching enzyme [ | 0.004 | |
| COG0296 | 628 | COG0296, GlgB, 1,4-alpha-glucan branching enzyme [ | 0.004 | |
| COG0296 | 628 | COG0296, GlgB, 1,4-alpha-glucan branching enzyme [ | 0.004 | |
| COG0296 | 628 | COG0296, GlgB, 1,4-alpha-glucan branching enzyme [ | 0.004 | |
| COG0296 | 628 | COG0296, GlgB, 1,4-alpha-glucan branching enzyme [ | 0.004 | |
| COG0296 | 628 | COG0296, GlgB, 1,4-alpha-glucan branching enzyme [ | 0.004 | |
| COG0296 | 628 | COG0296, GlgB, 1,4-alpha-glucan branching enzyme [ | 0.004 | |
| COG0296 | 628 | COG0296, GlgB, 1,4-alpha-glucan branching enzyme [ | 0.004 | |
| COG0296 | 628 | COG0296, GlgB, 1,4-alpha-glucan branching enzyme [ | 0.004 | |
| COG0296 | 628 | COG0296, GlgB, 1,4-alpha-glucan branching enzyme [ | 0.004 | |
| COG0296 | 628 | COG0296, GlgB, 1,4-alpha-glucan branching enzyme [ | 0.004 | |
| COG0296 | 628 | COG0296, GlgB, 1,4-alpha-glucan branching enzyme [ | 0.004 | |
| COG0296 | 628 | COG0296, GlgB, 1,4-alpha-glucan branching enzyme [ | 0.004 | |
| COG0296 | 628 | COG0296, GlgB, 1,4-alpha-glucan branching enzyme [ | 0.004 | |
| COG0296 | 628 | COG0296, GlgB, 1,4-alpha-glucan branching enzyme [ | 0.004 | |
| COG0296 | 628 | COG0296, GlgB, 1,4-alpha-glucan branching enzyme [ | 0.004 | |
| COG0296 | 628 | COG0296, GlgB, 1,4-alpha-glucan branching enzyme [ | 0.004 | |
| COG0296 | 628 | COG0296, GlgB, 1,4-alpha-glucan branching enzyme [ | 0.004 | |
| COG0296 | 628 | COG0296, GlgB, 1,4-alpha-glucan branching enzyme [ | 0.004 | |
| COG0296 | 628 | COG0296, GlgB, 1,4-alpha-glucan branching enzyme [ | 0.004 | |
| COG0296 | 628 | COG0296, GlgB, 1,4-alpha-glucan branching enzyme [ | 0.004 | |
| COG0296 | 628 | COG0296, GlgB, 1,4-alpha-glucan branching enzyme [ | 0.004 | |
| COG0296 | 628 | COG0296, GlgB, 1,4-alpha-glucan branching enzyme [ | 0.004 | |
| COG0296 | 628 | COG0296, GlgB, 1,4-alpha-glucan branching enzyme [ | 0.004 | |
| COG0296 | 628 | COG0296, GlgB, 1,4-alpha-glucan branching enzyme [ | 0.004 | |
| COG0296 | 628 | COG0296, GlgB, 1,4-alpha-glucan branching enzyme [ | 0.004 | |
| COG0296 | 628 | COG0296, GlgB, 1,4-alpha-glucan branching enzyme [ | 0.004 | |
| COG0296 | 628 | COG0296, GlgB, 1,4-alpha-glucan branching enzyme [ | 0.004 | |
| COG0296 | 628 | COG0296, GlgB, 1,4-alpha-glucan branching enzyme [ | 0.004 | |
| COG0296 | 628 | COG0296, GlgB, 1,4-alpha-glucan branching enzyme [ | 0.004 | |
| COG0296 | 628 | COG0296, GlgB, 1,4-alpha-glucan branching enzyme [ | 0.004 | |
| COG0296 | 628 | COG0296, GlgB, 1,4-alpha-glucan branching enzyme [ | 0.004 | |
| COG0296 | 628 | COG0296, GlgB, 1,4-alpha-glucan branching enzyme [ | 0.004 | |
| cd11325 | 436 | cd11325, AmyAc_GTHase, Alpha amylase catalytic dom | 0.004 | |
| cd11340 | 407 | cd11340, AmyAc_bac_CMD_like_3, Alpha amylase catal | 0.004 |
| >gnl|CDD|200460 cd11321, AmyAc_bac_euk_BE, Alpha amylase catalytic domain found in bacterial and eukaryotic branching enzymes | Back alignment and domain information |
|---|
Score = 370 bits (951), Expect = e-117
Identities = 134/173 (77%), Positives = 147/173 (84%)
Query: 1033 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLW 1092
FGTPE LKYL+D H G+ VLLDVVHSHASKNVLDGLN FDGT C+FH+G RG HPLW
Sbjct: 84 FGTPEDLKYLIDTAHGMGIAVLLDVVHSHASKNVLDGLNMFDGTDGCYFHEGERGNHPLW 143
Query: 1093 DSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFG 1152
DSRLFNY + EVLRFLLSNLRW+L+EY+FDGFRFDGVTSMLYH+HG G GFSG Y EYFG
Sbjct: 144 DSRLFNYGKWEVLRFLLSNLRWWLEEYRFDGFRFDGVTSMLYHHHGLGTGFSGDYGEYFG 203
Query: 1153 LNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDYRL 1205
LNVD DAL+YLM+AN LH+ YP ITIAEDVSGMP CRPV+EGG GFDYRL
Sbjct: 204 LNVDEDALVYLMLANDLLHELYPNAITIAEDVSGMPGLCRPVSEGGIGFDYRL 256
|
Branching enzymes (BEs) catalyze the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain, and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends, glycogen is more reactive to synthesis and digestion as well as being more soluble. This group includes bacterial and eukaryotic proteins. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 406 |
| >gnl|CDD|215246 PLN02447, PLN02447, 1,4-alpha-glucan-branching enzyme | Back alignment and domain information |
|---|
Score = 335 bits (861), Expect = e-100
Identities = 124/173 (71%), Positives = 140/173 (80%)
Query: 1033 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLW 1092
GTPE LKYL+D+ H GL VL+DVVHSHASKN LDGLN FDGT +FH GPRG H LW
Sbjct: 296 SGTPEDLKYLIDKAHSLGLRVLMDVVHSHASKNTLDGLNGFDGTDGSYFHSGPRGYHWLW 355
Query: 1093 DSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFG 1152
DSRLFNY EVLRFLLSNLRW+L+EY+FDGFRFDGVTSMLYH+HG F+G+Y+EYFG
Sbjct: 356 DSRLFNYGNWEVLRFLLSNLRWWLEEYKFDGFRFDGVTSMLYHHHGLQMAFTGNYNEYFG 415
Query: 1153 LNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDYRL 1205
+ D DA++YLM+AN LH YPE +TIAEDVSGMP CRPV EGG GFDYRL
Sbjct: 416 MATDVDAVVYLMLANDLLHGLYPEAVTIAEDVSGMPTLCRPVQEGGVGFDYRL 468
|
Length = 758 |
| >gnl|CDD|215519 PLN02960, PLN02960, alpha-amylase | Back alignment and domain information |
|---|
Score = 217 bits (555), Expect = 3e-58
Identities = 90/171 (52%), Positives = 117/171 (68%), Gaps = 1/171 (0%)
Query: 1033 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLW 1092
FGTP+ K LVDE H GL V LD+VHS+A+ + + GL+ FDG+ C+FH G RG H W
Sbjct: 462 FGTPDDFKRLVDEAHGLGLLVFLDIVHSYAAADEMVGLSLFDGSNDCYFHSGKRGHHKRW 521
Query: 1093 DSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFG 1152
+R+F Y + EVL FLLSNL W++ EY+ DGF+F + SMLY ++G F+G DEY
Sbjct: 522 GTRMFKYGDHEVLHFLLSNLNWWVTEYRVDGFQFHSLGSMLYTHNGFAS-FTGDLDEYCN 580
Query: 1153 LNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDY 1203
VD DALIYL++AN+ LH +P IITIAED + P C P ++GG GFDY
Sbjct: 581 QYVDRDALIYLILANEMLHQLHPNIITIAEDATFYPGLCEPTSQGGLGFDY 631
|
Length = 897 |
| >gnl|CDD|178782 PLN03244, PLN03244, alpha-amylase; Provisional | Back alignment and domain information |
|---|
Score = 192 bits (489), Expect = 4e-50
Identities = 85/171 (49%), Positives = 119/171 (69%), Gaps = 1/171 (0%)
Query: 1033 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLW 1092
+GTP+ K LVDE H GL V LD+VHS+A+ + + GL+ FDG+ C+FH G RG H W
Sbjct: 437 YGTPDDFKRLVDEAHGLGLLVFLDIVHSYAAADEMVGLSLFDGSNDCYFHTGKRGHHKHW 496
Query: 1093 DSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFG 1152
+R+F Y +++VL FL+SNL W++ EYQ DGF+F + SM+Y ++G F+G D+Y
Sbjct: 497 GTRMFKYGDLDVLHFLISNLNWWITEYQIDGFQFHSLASMIYTHNGFAS-FNGDLDDYCN 555
Query: 1153 LNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDY 1203
VD DAL+YL++AN+ LH +P+IITIAED + P C P ++GG GFDY
Sbjct: 556 QYVDKDALMYLILANEILHALHPKIITIAEDATYYPGLCEPTSQGGLGFDY 606
|
Length = 872 |
| >gnl|CDD|200460 cd11321, AmyAc_bac_euk_BE, Alpha amylase catalytic domain found in bacterial and eukaryotic branching enzymes | Back alignment and domain information |
|---|
Score = 179 bits (456), Expect = 7e-49
Identities = 66/81 (81%), Positives = 73/81 (90%)
Query: 930 GMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAESHDQALVGDKTIAFWLM 989
MAIPDKWI+LLK+ KDEDWNMGNIVHTLTNRRY EKT+AYAESHDQALVGDKT+AFWLM
Sbjct: 257 AMAIPDKWIKLLKEKKDEDWNMGNIVHTLTNRRYGEKTIAYAESHDQALVGDKTLAFWLM 316
Query: 990 DKEMYTHMSTLSDPSLIIDRA 1010
DKEMYT+MS LS + +IDR
Sbjct: 317 DKEMYTNMSVLSPLTPVIDRG 337
|
Branching enzymes (BEs) catalyze the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain, and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends, glycogen is more reactive to synthesis and digestion as well as being more soluble. This group includes bacterial and eukaryotic proteins. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 406 |
| >gnl|CDD|215246 PLN02447, PLN02447, 1,4-alpha-glucan-branching enzyme | Back alignment and domain information |
|---|
Score = 172 bits (437), Expect = 5e-44
Identities = 63/79 (79%), Positives = 71/79 (89%)
Query: 931 MAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAESHDQALVGDKTIAFWLMD 990
MAIPDKWIELLK+ +DEDW+MG+IVHTLTNRRY EK VAYAESHDQALVGDKTIAFWLMD
Sbjct: 470 MAIPDKWIELLKEKRDEDWSMGDIVHTLTNRRYTEKCVAYAESHDQALVGDKTIAFWLMD 529
Query: 991 KEMYTHMSTLSDPSLIIDR 1009
KEMY MSTL+ + ++DR
Sbjct: 530 KEMYDGMSTLTPATPVVDR 548
|
Length = 758 |
| >gnl|CDD|200461 cd11322, AmyAc_Glg_BE, Alpha amylase catalytic domain found in the Glycogen branching enzyme (also called 1,4-alpha-glucan branching enzyme) | Back alignment and domain information |
|---|
Score = 159 bits (405), Expect = 4e-42
Identities = 72/172 (41%), Positives = 101/172 (58%), Gaps = 5/172 (2%)
Query: 1033 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPR-GTHPL 1091
+GTP+ KY VD CH+AG+ V+LD V H K+ GL FDGT + + PR G HP
Sbjct: 104 YGTPDDFKYFVDACHQAGIGVILDWVPGHFPKD-DHGLARFDGT-PLYEYPDPRKGEHPD 161
Query: 1092 WDSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYF 1151
W + F+Y EV FL+SN ++L+EY DG R D V+SMLY ++ G G +
Sbjct: 162 WGTLNFDYGRNEVRSFLISNALYWLEEYHIDGLRVDAVSSMLYLDYDRGPGEWIPNI--Y 219
Query: 1152 GLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDY 1203
G N + +A+ +L N +H ++P ++TIAE+ + P PV EGG GFDY
Sbjct: 220 GGNENLEAIEFLKELNTVIHKRHPGVLTIAEESTAWPGVTAPVEEGGLGFDY 271
|
The glycogen branching enzyme catalyzes the third step of glycogen biosynthesis by the cleavage of an alpha-(1,4)-glucosidic linkage and the formation a new alpha-(1,6)-branch by subsequent transfer of cleaved oligosaccharide. They are part of a group called branching enzymes which catalyze the formation of alpha-1,6 branch points in either glycogen or starch. This group includes proteins from bacteria, eukaryotes, and archaea. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 402 |
| >gnl|CDD|223373 COG0296, GlgB, 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 162 bits (411), Expect = 2e-41
Identities = 67/172 (38%), Positives = 91/172 (52%), Gaps = 3/172 (1%)
Query: 1033 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLW 1092
+GTPE K LVD H+AG+ V+LD V +H + + L FDGT D RG H W
Sbjct: 210 YGTPEDFKALVDAAHQAGIGVILDWVPNHFPPDG-NYLARFDGTFLYEHEDPRRGEHTDW 268
Query: 1093 DSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFG 1152
+ +FNY EV FLL+N ++L+EY DG R D V SMLY +EY G
Sbjct: 269 GTAIFNYGRNEVRNFLLANALYWLEEYHIDGLRVDAVASMLY-LDYSRAEGEWVPNEY-G 326
Query: 1153 LNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDYR 1204
+ +A +L N +H++ P +TIAE+ + P PV GG GF Y+
Sbjct: 327 GRENLEAAEFLRNLNSLIHEEEPGAMTIAEESTDDPHVTLPVAIGGLGFGYK 378
|
Length = 628 |
| >gnl|CDD|237052 PRK12313, PRK12313, glycogen branching enzyme; Provisional | Back alignment and domain information |
|---|
Score = 150 bits (380), Expect = 2e-37
Identities = 65/180 (36%), Positives = 99/180 (55%), Gaps = 20/180 (11%)
Query: 1033 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGP-RGTHPL 1091
+GTPE YLVD H+ G+ V+LD V H K+ DGL FDGT + + P R +P
Sbjct: 216 YGTPEDFMYLVDALHQNGIGVILDWVPGHFPKDD-DGLAYFDGT-PLYEYQDPRRAENPD 273
Query: 1092 WDSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEY- 1150
W + F+ + EV FL+S+ ++LDEY DG R D V++MLY + YDE
Sbjct: 274 WGALNFDLGKNEVRSFLISSALFWLDEYHLDGLRVDAVSNMLYLD----------YDEEG 323
Query: 1151 ------FGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDYR 1204
+G + +A+ +L N+ ++ ++P+++ IAE+ + P PV GG GFDY+
Sbjct: 324 EWTPNKYGGRENLEAIYFLQKLNEVVYLEHPDVLMIAEESTAWPKVTGPVEVGGLGFDYK 383
|
Length = 633 |
| >gnl|CDD|235445 PRK05402, PRK05402, glycogen branching enzyme; Provisional | Back alignment and domain information |
|---|
Score = 136 bits (344), Expect = 2e-32
Identities = 73/178 (41%), Positives = 103/178 (57%), Gaps = 17/178 (9%)
Query: 1033 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLD--GLNEFDGTQACFFHDGPR-GTH 1089
FGTP+ +Y VD CH+AG+ V+LD V +H K D GL FDGT A + H PR G H
Sbjct: 311 FGTPDDFRYFVDACHQAGIGVILDWVPAHFPK---DAHGLARFDGT-ALYEHADPREGEH 366
Query: 1090 PLWDSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDE 1149
P W + +FNY EV FL++N ++L+E+ DG R D V SMLY ++ EG E
Sbjct: 367 PDWGTLIFNYGRNEVRNFLVANALYWLEEFHIDGLRVDAVASMLYLDYSRKEG------E 420
Query: 1150 Y----FGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDY 1203
+ +G + +A+ +L N +H+++P +TIAE+ + P RP EGG GF Y
Sbjct: 421 WIPNIYGGRENLEAIDFLRELNAVVHEEFPGALTIAEESTAWPGVTRPTEEGGLGFGY 478
|
Length = 726 |
| >gnl|CDD|188150 TIGR01515, branching_enzym, alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase | Back alignment and domain information |
|---|
Score = 129 bits (327), Expect = 7e-31
Identities = 65/172 (37%), Positives = 94/172 (54%), Gaps = 3/172 (1%)
Query: 1033 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLW 1092
FGTP+ Y VD CH+AG+ V+LD V H K+ GL EFDGT D G H W
Sbjct: 207 FGTPDDFMYFVDACHQAGIGVILDWVPGHFPKDDH-GLAEFDGTPLYEHKDPRDGEHWDW 265
Query: 1093 DSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFG 1152
+ +F+Y EV FL++N ++ + Y DG R D V SMLY ++ EG G
Sbjct: 266 GTLIFDYGRPEVRNFLVANALYWAEFYHIDGLRVDAVASMLYLDYSRDEG--EWSPNEDG 323
Query: 1153 LNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDYR 1204
+ +A+ +L N+ +++ +P ++TIAE+ + P RP EGG GF Y+
Sbjct: 324 GRENLEAVEFLRKLNQTVYEAFPGVVTIAEESTEWPGVTRPTDEGGLGFHYK 375
|
This model describes the glycogen branching enzymes which are responsible for the transfer of chains of approx. 7 alpha(1--4)-linked glucosyl residues to other similar chains (in new alpha(1--6) linkages) in the biosynthesis of glycogen. This enzyme is a member of the broader amylase family of starch hydrolases which fold as (beta/alpha)8 barrels, the so-called TIM-barrel structure. All of the sequences comprising the seed of this model have been experimentally characterized. (For instance,). This model encompasses both bacterial and eukaryotic species. No archaea have this enzyme, although Aquifex aolicus does. Two species, Bacillus thuringiensis and Clostridium perfringens have two sequences each which are annotated as amylases. These annotations are aparrently in error. GP|18143720 from C. perfringens, for instance, contains the note "674 aa, similar to gp:A14658_1 amylase (1,4-alpha-glucan branching enzyme (EC 2.4.1.18) ) from Bacillus thuringiensis (648 aa); 51.1% identity in 632 aa overlap." A branching enzyme from Porphyromonas gingivales, OMNI|PG1793, appears to be more closely related to the eukaryotic species (across a deep phylogenetic split) and may represent an instance of lateral transfer from this species' host. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here [Energy metabolism, Biosynthesis and degradation of polysaccharides]. Length = 618 |
| >gnl|CDD|199884 cd02854, E_set_GBE_euk_N, N-terminal Early set domain associated with the catalytic domain of eukaryotic glycogen branching enzyme (also called 1,4 alpha glucan branching enzyme) | Back alignment and domain information |
|---|
Score = 115 bits (290), Expect = 2e-30
Identities = 36/78 (46%), Positives = 45/78 (57%), Gaps = 2/78 (2%)
Query: 798 GDFNNWNREEFAYKKLDFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHGHLLDRLSPWA 857
GDFNNWNRE K+ +FGKWEL LPP +GS + H S+VKL V G LDR+ WA
Sbjct: 20 GDFNNWNRESHPLKRDEFGKWELFLPPK-EGSPAIPHGSKVKLHVETWDGGRLDRIPAWA 78
Query: 858 TYVTEPPVVGHAYEQRIW 875
V + P ++ W
Sbjct: 79 KRVVQDP-ETKIFDGVFW 95
|
This subfamily is composed of predominantly eukaryotic 1,4 alpha glucan branching enzymes, also called glycogen branching enzymes or starch binding enzymes in plants. E or "early" set domains are associated with the catalytic domain of the 1,4 alpha glucan branching enzymes at the N-terminal end. These enzymes catalyze the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage, yielding a non-reducing end oligosaccharide chain, as well as the subsequent attachment of short glucosyl chains to the alpha-1,6 position. Starch is composed of two types of glucan polymer: amylose and amylopectin. Amylose is mainly composed of linear chains of alpha-1,4 linked glucose residues and amylopectin consists of shorter alpha-1,4 linked chains connected by alpha-1,6 linkages. Amylopectin is synthesized from linear chains by starch branching enzyme. The N-terminal domains of the branching enzyme proteins may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase, among others. Length = 95 |
| >gnl|CDD|215246 PLN02447, PLN02447, 1,4-alpha-glucan-branching enzyme | Back alignment and domain information |
|---|
Score = 128 bits (323), Expect = 4e-30
Identities = 54/143 (37%), Positives = 78/143 (54%), Gaps = 8/143 (5%)
Query: 798 GDFNNWNREEFAYKKLDFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHGHLLDRLSPWA 857
GDFNNWN K +FG WE+ LP + DGS + H S+VK+ + G +DR+ W
Sbjct: 132 GDFNNWNPNAHWMTKNEFGVWEIFLP-DADGSPAIPHGSRVKIRMETPDGRWVDRIPAWI 190
Query: 858 TYVT-EPPVVGHAYEQRIWNPKPQDKHKWTSSKPKKPDNLKIYESHVGICTQEQKCASYE 916
Y P +G Y W+P ++K+ + +P +P L+IYE+HVG+ ++E K SY
Sbjct: 191 KYAVQAPGEIGAPYNGVYWDPPEEEKYVFKHPRPPRPAALRIYEAHVGMSSEEPKVNSYR 250
Query: 917 DFVRVVIPRIVKQG------MAI 933
+F V+PRI G MAI
Sbjct: 251 EFADDVLPRIKALGYNAVQLMAI 273
|
Length = 758 |
| >gnl|CDD|139075 PRK12568, PRK12568, glycogen branching enzyme; Provisional | Back alignment and domain information |
|---|
Score = 113 bits (283), Expect = 2e-25
Identities = 63/177 (35%), Positives = 99/177 (55%), Gaps = 15/177 (8%)
Query: 1034 GTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPR-GTHPLW 1092
G+P+ VD CH+AG+ V+LD V +H + GL +FDG A + H PR G H W
Sbjct: 316 GSPDGFAQFVDACHRAGIGVILDWVSAHFPDDA-HGLAQFDGA-ALYEHADPREGMHRDW 373
Query: 1093 DSRLFNYSEIEVLRFLL-SNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYF 1151
++ ++NY EV +LL S L W ++ Y DG R D V SMLY ++G EG E+
Sbjct: 374 NTLIYNYGRPEVTAYLLGSALEW-IEHYHLDGLRVDAVASMLYRDYGRAEG------EWV 426
Query: 1152 ----GLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDYR 1204
G + +A+ +L N+ + ++P ++TIAE+ + P P+++GG GF ++
Sbjct: 427 PNAHGGRENLEAVAFLRQLNREIASQFPGVLTIAEESTAWPGVTAPISDGGLGFTHK 483
|
Length = 730 |
| >gnl|CDD|237794 PRK14705, PRK14705, glycogen branching enzyme; Provisional | Back alignment and domain information |
|---|
Score = 113 bits (283), Expect = 4e-25
Identities = 62/170 (36%), Positives = 94/170 (55%), Gaps = 5/170 (2%)
Query: 1033 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPR-GTHPL 1091
FG P++ ++LVD H+AG+ VLLD V +H K+ L +FDG Q + H P G HP
Sbjct: 811 FGHPDEFRFLVDSLHQAGIGVLLDWVPAHFPKDSW-ALAQFDG-QPLYEHADPALGEHPD 868
Query: 1092 WDSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYF 1151
W + +F++ EV FL++N ++LDE+ DG R D V SMLY ++ EG F
Sbjct: 869 WGTLIFDFGRTEVRNFLVANALYWLDEFHIDGLRVDAVASMLYLDYSREEG--QWRPNRF 926
Query: 1152 GLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGF 1201
G + +A+ +L N ++ +P + IAE+ + P P + GG GF
Sbjct: 927 GGRENLEAISFLQEVNATVYKTHPGAVMIAEESTAFPGVTAPTSHGGLGF 976
|
Length = 1224 |
| >gnl|CDD|200464 cd11325, AmyAc_GTHase, Alpha amylase catalytic domain found in Glycosyltrehalose trehalohydrolase (also called Maltooligosyl trehalose Trehalohydrolase) | Back alignment and domain information |
|---|
Score = 102 bits (256), Expect = 1e-22
Identities = 55/175 (31%), Positives = 74/175 (42%), Gaps = 36/175 (20%)
Query: 1033 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDG--LNEFDGTQACFFHDGPRGTHP 1090
+G P+ LK LVD H+ GL V+LDVV++H DG L +F G +F D + P
Sbjct: 100 YGGPDDLKRLVDAAHRRGLAVILDVVYNHFGP---DGNYLWQFAGP---YFTD--DYSTP 151
Query: 1091 LW-DSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHN--HGCGEGFSGHY 1147
W D+ F+ EV +F + N ++L EY DG R D V ++ + H E
Sbjct: 152 -WGDAINFDGPGDEVRQFFIDNALYWLREYHVDGLRLDAVHAIRDDSGWHFLQE------ 204
Query: 1148 DEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFD 1202
L + A IAED P RP GG GFD
Sbjct: 205 -----LAREVRA-----------AAAGRPAHLIAEDDRNDPRLVRPPELGGAGFD 243
|
Glycosyltrehalose trehalohydrolase (GTHase) was discovered as part of a coupled system for the production of trehalose from soluble starch. In the first half of the reaction, glycosyltrehalose synthase (GTSase), an intramolecular glycosyl transferase, converts the glycosidic bond between the last two glucose residues of amylose from an alpha-1,4 bond to an alpha-1,1 bond, making a non-reducing glycosyl trehaloside. In the second half of the reaction, GTHase cleaves the alpha-1,4 glycosidic bond adjacent to the trehalose moiety to release trehalose and malto-oligosaccharide. Like isoamylase and other glycosidases that recognize branched oligosaccharides, GTHase contains an N-terminal extension and does not have the conserved calcium ion present in other alpha amylase family enzymes. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Glycosyltrehalose Trehalohydrolase Maltooligosyltrehalose Trehalohydrolase. Length = 436 |
| >gnl|CDD|237795 PRK14706, PRK14706, glycogen branching enzyme; Provisional | Back alignment and domain information |
|---|
Score = 93.5 bits (232), Expect = 2e-19
Identities = 60/173 (34%), Positives = 86/173 (49%), Gaps = 8/173 (4%)
Query: 1033 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLW 1092
GTPE KYLV+ H G+ V+LD V H + GL FDG + D +G H W
Sbjct: 213 LGTPEDFKYLVNHLHGLGIGVILDWVPGHFPTDES-GLAHFDGGPLYEYADPRKGYHYDW 271
Query: 1093 DSRLFNYSEIEVLRFLL-SNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYF 1151
++ +F+Y EV+ FL+ S L+W L ++ DG R D V SMLY + E +
Sbjct: 272 NTYIFDYGRNEVVMFLIGSALKW-LQDFHVDGLRVDAVASMLYLDFSRTEWVPNIH---- 326
Query: 1152 GLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDYR 1204
G + +A+ +L N+ H P + IAE+ + P P G GFDY+
Sbjct: 327 GGRENLEAIAFLKRLNEVTHHMAPGCMMIAEESTSFPGVTVPTPY-GLGFDYK 378
|
Length = 639 |
| >gnl|CDD|215519 PLN02960, PLN02960, alpha-amylase | Back alignment and domain information |
|---|
Score = 83.3 bits (206), Expect = 4e-16
Identities = 33/81 (40%), Positives = 49/81 (60%), Gaps = 1/81 (1%)
Query: 850 LDRLSPWATYVTEPPVVGHAYEQRIWNPKPQDKHKWTSSKPKKPDNLKIYESHVGICTQE 909
L+R+ WATYV P G + W P P++ +KW +PK P +L+IYE HVGI E
Sbjct: 351 LERVPAWATYV-LPDPDGKQWYAIHWEPPPEEAYKWKFERPKVPKSLRIYECHVGISGSE 409
Query: 910 QKCASYEDFVRVVIPRIVKQG 930
K +S+++F + V+P + K G
Sbjct: 410 PKISSFKEFTQKVLPHVKKAG 430
|
Length = 897 |
| >gnl|CDD|215246 PLN02447, PLN02447, 1,4-alpha-glucan-branching enzyme | Back alignment and domain information |
|---|
Score = 79.7 bits (197), Expect = 6e-15
Identities = 29/55 (52%), Positives = 41/55 (74%)
Query: 1217 FDAAMNTTEERFKWLSADPGYVSTKHEGDKVIIFERAGLLFAFNFNGTQSFTDYR 1271
FD AM +E++ +L+++ YVS K EGDKVI+FER L+F FNF+ T S++DYR
Sbjct: 616 FDRAMMHLDEKYGFLTSEHQYVSRKDEGDKVIVFERGDLVFVFNFHPTNSYSDYR 670
|
Length = 758 |
| >gnl|CDD|200460 cd11321, AmyAc_bac_euk_BE, Alpha amylase catalytic domain found in bacterial and eukaryotic branching enzymes | Back alignment and domain information |
|---|
Score = 75.3 bits (186), Expect = 5e-14
Identities = 26/61 (42%), Positives = 39/61 (63%), Gaps = 6/61 (9%)
Query: 879 PQDKHKWTSSKPKKPDNLKIYESHVGICTQEQKCASYEDFVRVVIPRIVKQG------MA 932
P++ +++ +P KP L+IYE+HVG+ ++E K ASY +F V+PRI K G MA
Sbjct: 1 PEEPYQFKHPRPPKPRALRIYEAHVGMSSEEPKVASYREFTDNVLPRIKKLGYNAIQLMA 60
Query: 933 I 933
I
Sbjct: 61 I 61
|
Branching enzymes (BEs) catalyze the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain, and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends, glycogen is more reactive to synthesis and digestion as well as being more soluble. This group includes bacterial and eukaryotic proteins. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 406 |
| >gnl|CDD|233850 TIGR02402, trehalose_TreZ, malto-oligosyltrehalose trehalohydrolase | Back alignment and domain information |
|---|
Score = 73.5 bits (181), Expect = 4e-13
Identities = 38/105 (36%), Positives = 52/105 (49%), Gaps = 16/105 (15%)
Query: 1033 FGTPEQLKYLVDECHKAGLYVLLDVVHSH--ASKNVLDGLNEFDGTQACFFHDGPRGTHP 1090
+G P+ LK LVD H GL VLLDVV++H N L A +F D T P
Sbjct: 156 YGGPDDLKALVDAAHGLGLGVLLDVVYNHFGPEGNYLPRF-------APYFTDR-YST-P 206
Query: 1091 LWDSRLFNYSE---IEVLRFLLSNLRWYLDEYQFDGFRFDGVTSM 1132
+ N+ EV R+++ N ++L EY FDG R D V ++
Sbjct: 207 WGAA--INFDGPGSDEVRRYIIDNALYWLREYHFDGLRLDAVHAI 249
|
Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1->4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system [Energy metabolism, Biosynthesis and degradation of polysaccharides]. Length = 544 |
| >gnl|CDD|178782 PLN03244, PLN03244, alpha-amylase; Provisional | Back alignment and domain information |
|---|
Score = 72.7 bits (178), Expect = 1e-12
Identities = 33/73 (45%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
Query: 850 LDRLSPWATYVTEPPVVGHAYEQRIWNPKPQDKHKWTSSKPKKPDNLKIYESHVGICTQE 909
L+R+ WATYV P G W P P+ HKW + KPK P++L+IYE HVGI E
Sbjct: 356 LERIPAWATYV-LPDDDGKQAFAIHWEPPPEAAHKWKNMKPKVPESLRIYECHVGISGSE 414
Query: 910 QKCASYEDFVRVV 922
K +S+E+F V
Sbjct: 415 PKISSFEEFTEKV 427
|
Length = 872 |
| >gnl|CDD|200488 cd11350, AmyAc_4, Alpha amylase catalytic domain found in an uncharacterized protein family | Back alignment and domain information |
|---|
Score = 70.4 bits (173), Expect = 2e-12
Identities = 39/104 (37%), Positives = 53/104 (50%), Gaps = 14/104 (13%)
Query: 1033 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEF-----DGTQACFFHDGPR- 1086
+GTPE LK LVDECH+ G+ V+LDVV++HA +G + D D P
Sbjct: 78 YGTPEDLKRLVDECHQRGIAVILDVVYNHA-----EGQSPLARLYWDYWYNPPPADPPWF 132
Query: 1087 ---GTHPLWDSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFD 1127
G H + FN+ F+ R++L+EY DGFRFD
Sbjct: 133 NVWGPHFYYVGYDFNHESPPTRDFVDDVNRYWLEEYHIDGFRFD 176
|
The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 390 |
| >gnl|CDD|215246 PLN02447, PLN02447, 1,4-alpha-glucan-branching enzyme | Back alignment and domain information |
|---|
Score = 69.3 bits (170), Expect = 1e-11
Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 4/85 (4%)
Query: 10 ASIHIPELH---KLLERDPYLNPYQYEMKRRYGLMVNFLEQFEKHEGGIEKFTTSYNKYG 66
A+ P + E DP L PY+ ++ RY E+ EK+EGG+E F+ Y K+G
Sbjct: 49 AAASPPPPGDGLGIYEIDPMLEPYEDHLRYRYSRYRRRREEIEKNEGGLEAFSRGYEKFG 108
Query: 67 IHVQADNSVRCFEWAPSAQQLYLTG 91
+ +++ + EWAP A+ L G
Sbjct: 109 FN-RSEGGITYREWAPGAKAAALIG 132
|
Length = 758 |
| >gnl|CDD|200452 cd11313, AmyAc_arch_bac_AmyA, Alpha amylase catalytic domain found in archaeal and bacterial Alpha-amylases (also called 1,4-alpha-D-glucan-4-glucanohydrolase) | Back alignment and domain information |
|---|
Score = 63.3 bits (155), Expect = 2e-10
Identities = 27/100 (27%), Positives = 52/100 (52%), Gaps = 10/100 (10%)
Query: 1033 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRG--THP 1090
+GT E K LVDE H G+ V+LD V +H + + + ++ G T+
Sbjct: 72 YGTLEDFKALVDEAHDRGMKVILDWVANHTAWD-----HPLVEEHPEWYLRDSDGNITNK 126
Query: 1091 LWD-SRL--FNYSEIEVLRFLLSNLRWYLDEYQFDGFRFD 1127
++D + + +YS E+ +++ +++++ E+ DGFR D
Sbjct: 127 VFDWTDVADLDYSNPELRDYMIDAMKYWVREFDVDGFRCD 166
|
AmyA (EC 3.2.1.1) catalyzes the hydrolysis of alpha-(1,4) glycosidic linkages of glycogen, starch, related polysaccharides, and some oligosaccharides. This group includes firmicutes, bacteroidetes, and proteobacteria. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 336 |
| >gnl|CDD|223373 COG0296, GlgB, 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 61.9 bits (151), Expect = 2e-09
Identities = 30/137 (21%), Positives = 54/137 (39%), Gaps = 16/137 (11%)
Query: 798 GDFNNWN-REEFAYKKLDFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHGHLLDRLSPW 856
GDFN+W+ R + + G WEL +P P G+ K + + G L + P+
Sbjct: 54 GDFNDWDGRRMPMRDRKESGIWELFVPGAPPGTR-------YKYELIDPSGQLRLKADPY 106
Query: 857 ATYVTEPPVVGHAYEQRIWNPKPQ--DKHKWTSSKPKKPDN-LKIYESHVGICTQEQKCA 913
A E + + + +W + + + IYE HVG T + +
Sbjct: 107 ARR-QEVGPHTASQ---VVDLPDYEWQDERWDRAWRGRFWEPIVIYELHVGSFTPD-RFL 161
Query: 914 SYEDFVRVVIPRIVKQG 930
Y + ++P + + G
Sbjct: 162 GYFELAIELLPYLKELG 178
|
Length = 628 |
| >gnl|CDD|200477 cd11338, AmyAc_CMD, Alpha amylase catalytic domain found in cyclomaltodextrinases and related proteins | Back alignment and domain information |
|---|
Score = 55.6 bits (135), Expect = 1e-07
Identities = 34/121 (28%), Positives = 47/121 (38%), Gaps = 19/121 (15%)
Query: 1032 LFGTPEQLKYLVDECHKAGLYVLLDVVHSHAS-------KNVLDG-----LNEFDGTQAC 1079
GT E K LV+E HK G+ V+LD V +H + G + F
Sbjct: 98 HLGTEEDFKELVEEAHKRGIRVILDGVFNHTGDDSPYFQDVLKYGESSAYQDWFSIYYFW 157
Query: 1080 FFHDGPRGTHPLW---DSRL--FNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLY 1134
+ + W S L N EV +L S R++L E DG+R D V +
Sbjct: 158 PYFTDEPPNYESWWGVPS-LPKLNTENPEVREYLDSVARYWLKEGDIDGWRLD-VADEVP 215
Query: 1135 H 1135
H
Sbjct: 216 H 216
|
Cyclomaltodextrinase (CDase; EC3.2.1.54), neopullulanase (NPase; EC 3.2.1.135), and maltogenic amylase (MA; EC 3.2.1.133) catalyze the hydrolysis of alpha-(1,4) glycosidic linkages on a number of substrates including cyclomaltodextrins (CDs), pullulan, and starch. These enzymes hydrolyze CDs and starch to maltose and pullulan to panose by cleavage of alpha-1,4 glycosidic bonds whereas alpha-amylases essentially lack activity on CDs and pullulan. They also catalyze transglycosylation of oligosaccharides to the C3-, C4- or C6-hydroxyl groups of various acceptor sugar molecules. Since these proteins are nearly indistinguishable from each other, they are referred to as cyclomaltodextrinases (CMDs). The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 389 |
| >gnl|CDD|217237 pfam02806, Alpha-amylase_C, Alpha amylase, C-terminal all-beta domain | Back alignment and domain information |
|---|
Score = 50.4 bits (121), Expect = 1e-07
Identities = 18/40 (45%), Positives = 22/40 (55%), Gaps = 5/40 (12%)
Query: 1237 YVSTKHEGDKVIIFERAG-----LLFAFNFNGTQSFTDYR 1271
++S G+ VI FER G LL FNF +QS DYR
Sbjct: 1 WISFDDNGNNVIAFERGGDKGGGLLVVFNFTPSQSRQDYR 40
|
Alpha amylase is classified as family 13 of the glycosyl hydrolases. The structure is an 8 stranded alpha/beta barrel containing the active site, interrupted by a ~70 a.a. calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain. Length = 92 |
| >gnl|CDD|224440 COG1523, PulA, Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 55.0 bits (133), Expect = 2e-07
Identities = 31/101 (30%), Positives = 46/101 (45%), Gaps = 20/101 (19%)
Query: 1039 LKYLVDECHKAGLYVLLDVVHSH-ASKNVLDGLNEFDGT--QACFFHDGPRGTHPLWDSR 1095
K +V HKAG+ V+LDVV +H A N L F G + D D
Sbjct: 267 FKDMVKALHKAGIEVILDVVFNHTAEGNELGPTLSFRGIDPNYYYRLDP--------DGY 318
Query: 1096 LFNYS----EIE-----VLRFLLSNLRWYLDEYQFDGFRFD 1127
N + + V + ++ +LR++++EY DGFRFD
Sbjct: 319 YSNGTGCGNTLNTEHPMVRKLIVDSLRYWVEEYHVDGFRFD 359
|
Length = 697 |
| >gnl|CDD|200465 cd11326, AmyAc_Glg_debranch, Alpha amylase catalytic domain found in glycogen debranching enzymes | Back alignment and domain information |
|---|
Score = 54.0 bits (131), Expect = 3e-07
Identities = 36/134 (26%), Positives = 54/134 (40%), Gaps = 40/134 (29%)
Query: 1014 FGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEF 1073
F P+ +Y D+ + ++ K +V HKAG+ V+LDVV++H + E
Sbjct: 91 FFAPDP-RYASDDAPGGPV----DEFKAMVKALHKAGIEVILDVVYNHTA--------EG 137
Query: 1074 DGTQACFFHDGP----RG-------THPLWDSRLFNYS---------EIEVLRFLLSNLR 1113
GP RG NY+ VLR +L +LR
Sbjct: 138 G-------ELGPTLSFRGLDNASYYRLDPDGPYYLNYTGCGNTLNTNHPVVLRLILDSLR 190
Query: 1114 WYLDEYQFDGFRFD 1127
+++ E DGFRFD
Sbjct: 191 YWVTEMHVDGFRFD 204
|
Debranching enzymes facilitate the breakdown of glycogen through glucosyltransferase and glucosidase activity. These activities are performed by a single enzyme in mammals, yeast, and some bacteria, but by two distinct enzymes in Escherichia coli and other bacteria. Debranching enzymes perform two activities: 4-alpha-D-glucanotransferase (EC 2.4.1.25) and amylo-1,6-glucosidase (EC 3.2.1.33). 4-alpha-D-glucanotransferase catalyzes the endohydrolysis of 1,6-alpha-D-glucoside linkages at points of branching in chains of 1,4-linked alpha-D-glucose residues. Amylo-alpha-1,6-glucosidase catalyzes the endohydrolysis of 1,6-alpha-D-glucoside linkages at points of branching in chains of 1,4-linked alpha-D-glucose residues. In Escherichia coli, GlgX is the debranching enzyme and malQ is the 4-alpha-glucanotransferase. TreX, an archaeal glycogen-debranching enzyme has dual activities like mammals and yeast, but is structurally similar to GlgX. TreX exists in two oligomeric states, a dimer and tetramer. Isoamylase (EC 3.2.1.68) is one of the starch-debranching enzymes that catalyzes the hydrolysis of alpha-1,6-glucosidic linkages specific in alpha-glucans such as amylopectin or glycogen and their beta-limit dextrins. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 433 |
| >gnl|CDD|178782 PLN03244, PLN03244, alpha-amylase; Provisional | Back alignment and domain information |
|---|
Score = 54.2 bits (130), Expect = 5e-07
Identities = 21/56 (37%), Positives = 37/56 (66%), Gaps = 1/56 (1%)
Query: 931 MAIPDKWIELLKKFKDEDWNMGNIVHTLT-NRRYMEKTVAYAESHDQALVGDKTIA 985
++ PD W++ L D +W+M IV TL N+ Y +K ++YAE+H+Q++ G ++ A
Sbjct: 610 LSAPDMWLDFLDNIPDHEWSMSKIVSTLIANKEYADKMLSYAENHNQSISGGRSFA 665
|
Length = 872 |
| >gnl|CDD|217288 pfam02922, CBM_48, Carbohydrate-binding module 48 (Isoamylase N-terminal domain) | Back alignment and domain information |
|---|
Score = 48.5 bits (116), Expect = 5e-07
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 7/62 (11%)
Query: 797 AGDFNNWNREEFAYKKL-DFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHGHLLDRLSP 855
DFNNW+ EE ++ + G WE+ LP + L H + K V G + +L P
Sbjct: 28 VLDFNNWDGEEHPMERKREGGVWEVFLPGD------LPHGGRYKYRVDGPDGPIKLKLDP 81
Query: 856 WA 857
+A
Sbjct: 82 YA 83
|
This domain is found in a range of enzymes that act on branched substrates - isoamylase, pullulanase and branching enzyme. This family also contains the beta subunit of 5' AMP activated kinase. Length = 83 |
| >gnl|CDD|200458 cd11319, AmyAc_euk_AmyA, Alpha amylase catalytic domain found in eukaryotic Alpha-amylases (also called 1,4-alpha-D-glucan-4-glucanohydrolase) | Back alignment and domain information |
|---|
Score = 52.2 bits (126), Expect = 1e-06
Identities = 27/127 (21%), Positives = 44/127 (34%), Gaps = 42/127 (33%)
Query: 1033 FGTPEQLKYLVDECHKAGLYVLLDVVHSH-ASKNVLDGLNEFDGT---------QACFFH 1082
FGT + LK L HK G+Y+++DVV +H AS ++ C+
Sbjct: 94 FGTADDLKALSKALHKRGMYLMVDVVVNHMASAGPGSDVDYSSFVPFNDSSYYHPYCWIT 153
Query: 1083 DGPRGTHPLWDSRLFNYSEIE--------------------VLRFLLSNLRWYLDEYQFD 1122
D ++ N + +E V+ L ++ + Y D
Sbjct: 154 D--------YN----NQTSVEDCWLGDDVVALPDLNTENPFVVSTLNDWIKNLVSNYSID 201
Query: 1123 GFRFDGV 1129
G R D
Sbjct: 202 GLRIDTA 208
|
AmyA (EC 3.2.1.1) catalyzes the hydrolysis of alpha-(1,4) glycosidic linkages of glycogen, starch, related polysaccharides, and some oligosaccharides. This group includes eukaryotic alpha-amylases including proteins from fungi, sponges, and protozoans. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 375 |
| >gnl|CDD|233728 TIGR02102, pullulan_Gpos, pullulanase, extracellular, Gram-positive | Back alignment and domain information |
|---|
Score = 52.2 bits (125), Expect = 2e-06
Identities = 34/100 (34%), Positives = 53/100 (53%), Gaps = 23/100 (23%)
Query: 1038 QLKYLVDECHKAGLYVLLDVVHSHASK---------NVLDGLNEFDGTQACFFHDGPRG- 1087
+ K L++E HK G+ V+LDVV++H +K N ++ DGT F G G
Sbjct: 556 EFKNLINEIHKRGMGVILDVVYNHTAKVYIFEDLEPNYYHFMDA-DGTPRTSFGGGRLGT 614
Query: 1088 THPLWDSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFD 1127
TH + SR R L+ ++++ +DE++ DGFRFD
Sbjct: 615 THEM--SR----------RILVDSIKYLVDEFKVDGFRFD 642
|
Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PMID:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PMID:8798645). Length = 1111 |
| >gnl|CDD|200451 cd00551, AmyAc_family, Alpha amylase catalytic domain family | Back alignment and domain information |
|---|
Score = 49.1 bits (117), Expect = 6e-06
Identities = 23/97 (23%), Positives = 30/97 (30%), Gaps = 49/97 (50%)
Query: 1033 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLW 1092
GT E K LV HK G+ V+LD+V +H
Sbjct: 72 LGTEEDFKELVKAAHKRGIKVILDLVFNH------------------------------- 100
Query: 1093 DSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGV 1129
++LRF L + DGFR D
Sbjct: 101 ----------DILRFWL--------DEGVDGFRLDAA 119
|
The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; and C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost this catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 260 |
| >gnl|CDD|200460 cd11321, AmyAc_bac_euk_BE, Alpha amylase catalytic domain found in bacterial and eukaryotic branching enzymes | Back alignment and domain information |
|---|
Score = 48.8 bits (117), Expect = 1e-05
Identities = 14/26 (53%), Positives = 17/26 (65%)
Query: 769 FGTPEQLKYLVDECHKAGLLCFMHVV 794
FGTPE LKYL+D H G+ + VV
Sbjct: 84 FGTPEDLKYLIDTAHGMGIAVLLDVV 109
|
Branching enzymes (BEs) catalyze the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain, and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends, glycogen is more reactive to synthesis and digestion as well as being more soluble. This group includes bacterial and eukaryotic proteins. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 406 |
| >gnl|CDD|215519 PLN02960, PLN02960, alpha-amylase | Back alignment and domain information |
|---|
Score = 49.1 bits (117), Expect = 1e-05
Identities = 20/56 (35%), Positives = 37/56 (66%), Gaps = 1/56 (1%)
Query: 931 MAIPDKWIELLKKFKDEDWNMGNIVHTL-TNRRYMEKTVAYAESHDQALVGDKTIA 985
++ + W+ LL+ D++W+M IV TL N+ +K ++YAE+H+Q++ G K+ A
Sbjct: 635 LSPSEMWLSLLENVPDQEWSMSKIVSTLVKNKENADKMLSYAENHNQSISGGKSFA 690
|
Length = 897 |
| >gnl|CDD|214758 smart00642, Aamy, Alpha-amylase domain | Back alignment and domain information |
|---|
Score = 46.2 bits (110), Expect = 2e-05
Identities = 30/108 (27%), Positives = 41/108 (37%), Gaps = 17/108 (15%)
Query: 1033 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLW 1092
FGT E K LVD H G+ V+LDVV +H S DG D A F +G
Sbjct: 66 FGTMEDFKELVDAAHARGIKVILDVVINHTS----DGGFRLD--AAKFPLNGSA------ 113
Query: 1093 DSRLFNYSEIEVLR----FLLSNLRWYLDEYQFDGFRFDGVTSMLYHN 1136
L ++ + +L ++NL E DG +
Sbjct: 114 -FSLLDFFALALLLKILGIGMTNLPIIDYEQYRDGGGDPNMWWDGTCQ 160
|
Length = 166 |
| >gnl|CDD|215246 PLN02447, PLN02447, 1,4-alpha-glucan-branching enzyme | Back alignment and domain information |
|---|
Score = 47.7 bits (114), Expect = 3e-05
Identities = 15/26 (57%), Positives = 17/26 (65%)
Query: 769 FGTPEQLKYLVDECHKAGLLCFMHVV 794
GTPE LKYL+D+ H GL M VV
Sbjct: 296 SGTPEDLKYLIDKAHSLGLRVLMDVV 321
|
Length = 758 |
| >gnl|CDD|237795 PRK14706, PRK14706, glycogen branching enzyme; Provisional | Back alignment and domain information |
|---|
Score = 48.1 bits (114), Expect = 3e-05
Identities = 31/117 (26%), Positives = 49/117 (41%), Gaps = 21/117 (17%)
Query: 794 VCAAGDFNNWNREEFAYKKLDFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHGHLLDRL 853
V GDFN+WN + ++LDFG W +P G + K V G +D++
Sbjct: 52 VSVVGDFNDWNGFDHPMQRLDFGFWGAFVPGARPG-------QRYKFRVTGAAGQTVDKM 104
Query: 854 SPWATYVTEPPVVGHAYEQRIWNPKPQDKHKWTSSK------PKKPDNLKIYESHVG 904
P+ ++ P IW +D+ +WT ++ + IYE HVG
Sbjct: 105 DPYGSFFEVRP----NTASIIW----EDRFEWTDTRWMSSRTAGFDQPISIYEVHVG 153
|
Length = 639 |
| >gnl|CDD|223443 COG0366, AmyA, Glycosidases [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 47.7 bits (113), Expect = 3e-05
Identities = 41/186 (22%), Positives = 67/186 (36%), Gaps = 52/186 (27%)
Query: 1033 FGTPEQLKYLVDECHKAGLYVLLDVVHSHAS------KNVLDGLNEFDGTQACFFH---- 1082
FGT E K LV+E HK G+ V+LD+V +H S K ++ ++
Sbjct: 73 FGTEEDFKELVEEAHKRGIKVILDLVFNHTSDEHPWFKEARSSKPNP--KRSDYYIWRDP 130
Query: 1083 --------------DGPRGTHPLWDSRL----------FNYSEIEVLRFLLSNLRWYLDE 1118
G T N+ EV LL ++++LD
Sbjct: 131 DPDGTPPNNWFSVFGGDAWTWGNTGEYYLHLFSSEQPDLNWENPEVREELLDVVKFWLD- 189
Query: 1119 YQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEII 1178
DGFR D H + FGL + L +L +++L ++ P+++
Sbjct: 190 KGVDGFRLDAAK---------------HISKDFGLPPSEENLTFLEEIHEYLREENPDVL 234
Query: 1179 TIAEDV 1184
E +
Sbjct: 235 IYGEAI 240
|
Length = 505 |
| >gnl|CDD|233730 TIGR02104, pulA_typeI, pullulanase, type I | Back alignment and domain information |
|---|
Score = 47.7 bits (114), Expect = 4e-05
Identities = 27/94 (28%), Positives = 51/94 (54%), Gaps = 8/94 (8%)
Query: 1038 QLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGT-QACFFHDGPRGTHPLWDSRL 1096
+LK ++ H+ G+ V++DVV++H + F+ T ++ GT + +
Sbjct: 230 ELKQMIQALHENGIRVIMDVVYNHTYSRE---ESPFEKTVPGYYYRYNEDGT-LSNGTGV 285
Query: 1097 FN--YSEIEVLR-FLLSNLRWYLDEYQFDGFRFD 1127
N SE E++R F++ ++ +++ EY DGFRFD
Sbjct: 286 GNDTASEREMMRKFIVDSVLYWVKEYNIDGFRFD 319
|
Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases. Length = 605 |
| >gnl|CDD|235445 PRK05402, PRK05402, glycogen branching enzyme; Provisional | Back alignment and domain information |
|---|
Score = 46.7 bits (112), Expect = 8e-05
Identities = 28/118 (23%), Positives = 42/118 (35%), Gaps = 19/118 (16%)
Query: 794 VCAAGDFNNWNREEFAYKKL-DFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHGHLLDR 852
V GDFN W+ + + G WEL +P +G K + G LL +
Sbjct: 145 VSVVGDFNGWDGRRHPMRLRGESGVWELFIPGLGEGEL-------YKFEILTADGELLLK 197
Query: 853 LSPWATYVTEPPVVGHAYEQRIWNPKP---QDKHKWTSSKPKKPDN---LKIYESHVG 904
P+A P A + + D W + K+ + IYE H+G
Sbjct: 198 ADPYAFAAEVRP--ATA--SIVADLSQYQWNDA-AWMEKRAKRNPLDAPISIYEVHLG 250
|
Length = 726 |
| >gnl|CDD|200489 cd11352, AmyAc_5, Alpha amylase catalytic domain found in an uncharacterized protein family | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 1e-04
Identities = 15/33 (45%), Positives = 22/33 (66%)
Query: 1033 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKN 1065
FGT E L+ LVD H G+YV+LD++ +H+
Sbjct: 97 FGTREDLRDLVDAAHARGIYVILDIILNHSGDV 129
|
The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 443 |
| >gnl|CDD|199885 cd02855, E_set_GBE_prok_N, N-terminal Early set domain associated with the catalytic domain of prokaryotic glycogen branching enzyme | Back alignment and domain information |
|---|
Score = 41.3 bits (98), Expect = 2e-04
Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 8/72 (11%)
Query: 794 VCAAGDFNNWNREEFAYKKL-DFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHGHLLDR 852
V GDFN+W+ +++ D G WEL +P +G K + G +L +
Sbjct: 33 VSVVGDFNDWDGRAHPMRRIGDSGVWELFIPGAKEGDL-------YKYEIETADGEVLLK 85
Query: 853 LSPWATYVTEPP 864
P+A Y P
Sbjct: 86 ADPYAFYAELRP 97
|
This subfamily is composed of predominantly prokaryotic 1,4 alpha glucan branching enzymes, also called glycogen branching enzymes. E or "early" set domains are associated with the catalytic domain of glycogen branching enzymes at the N-terminal end. Glycogen branching enzyme catalyzes the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage, yielding a non-reducing end oligosaccharide chain, as well as the subsequent attachment of short glucosyl chains to the alpha-1,6 position. By increasing the number of non-reducing ends, glycogen is more reactive to synthesis and digestion as well as being more soluble. The N-terminal domain of the 1,4 alpha glucan branching enzyme may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase, among others. Length = 105 |
| >gnl|CDD|223373 COG0296, GlgB, 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 4e-04
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 769 FGTPEQLKYLVDECHKAGLLCFMHVV 794
+GTPE K LVD H+AG+ + V
Sbjct: 210 YGTPEDFKALVDAAHQAGIGVILDWV 235
|
Length = 628 |
| >gnl|CDD|131155 TIGR02100, glgX_debranch, glycogen debranching enzyme GlgX | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 4e-04
Identities = 32/116 (27%), Positives = 45/116 (38%), Gaps = 38/116 (32%)
Query: 1034 GTPEQLKYLVDECHKAGLYVLLDVVHSH-ASKNVLDGLNEFDGTQACFFHDGP----RG- 1087
G + K +V H AG+ V+LDVV++H A N GP RG
Sbjct: 242 GQVAEFKTMVRALHDAGIEVILDVVYNHTAEGN----------------ELGPTLSFRGI 285
Query: 1088 -------THPLWDSRLFNY---------SEIEVLRFLLSNLRWYLDEYQFDGFRFD 1127
P N S VL+ ++ +LR+++ E DGFRFD
Sbjct: 286 DNASYYRLQPDDKRYYINDTGTGNTLNLSHPRVLQMVMDSLRYWVTEMHVDGFRFD 341
|
This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase [Energy metabolism, Biosynthesis and degradation of polysaccharides]. Length = 688 |
| >gnl|CDD|200455 cd11316, AmyAc_bac2_AmyA, Alpha amylase catalytic domain found in bacterial Alpha-amylases (also called 1,4-alpha-D-glucan-4-glucanohydrolase) | Back alignment and domain information |
|---|
Score = 44.1 bits (105), Expect = 4e-04
Identities = 28/131 (21%), Positives = 47/131 (35%), Gaps = 27/131 (20%)
Query: 1033 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKN---VLDGLNEFDGTQACF--FHDGPRG 1087
+GT E + L+ E HK G+ V++D+V +H S + + D + + D G
Sbjct: 66 YGTMEDFERLIAEAHKRGIKVIIDLVINHTSSEHPWFQEAASSPDSPYRDYYIWADDDPG 125
Query: 1088 THPLWDSRL--------------------FNYSEIEVLRFLLSNLRWYLDEYQFDGFRFD 1127
W + N V + +++LD+ DGFR D
Sbjct: 126 GWSSWGGNVWHKAGDGGYYYGAFWSGMPDLNLDNPAVREEIKKIAKFWLDK-GVDGFRLD 184
Query: 1128 GVTSMLYHNHG 1138
+Y N
Sbjct: 185 AAK-HIYENGE 194
|
AmyA (EC 3.2.1.1) catalyzes the hydrolysis of alpha-(1,4) glycosidic linkages of glycogen, starch, related polysaccharides, and some oligosaccharides. This group includes Chloroflexi, Dictyoglomi, and Fusobacteria. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 403 |
| >gnl|CDD|200471 cd11332, AmyAc_OligoGlu_TS, Alpha amylase catalytic domain found in oligo-1,6-glucosidase (also called isomaltase; sucrase-isomaltase; alpha-limit dextrinase), trehalose synthase (also called maltose alpha-D-glucosyltransferase), and related proteins | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 4e-04
Identities = 37/135 (27%), Positives = 46/135 (34%), Gaps = 40/135 (29%)
Query: 1032 LFGTPEQLKYLVDECHKAGLYVLLDVVHSHAS------KNVLDGLNEFDGTQACFFHDG- 1084
LFGT LV H+ GL V++D+V +H S + L F DG
Sbjct: 71 LFGTLADFDALVAAAHELGLRVIVDIVPNHTSDQHPWFQAALAAGPGSPERARYIFRDGR 130
Query: 1085 -PRGTHPL--WDSR----------------------LF-------NYSEIEVLRFLLSNL 1112
P G P W S LF N+ EV L
Sbjct: 131 GPDGELPPNNWQSVFGGPAWTRVTEPDGTDGQWYLHLFAPEQPDLNWDNPEVRAEFEDVL 190
Query: 1113 RWYLDEYQFDGFRFD 1127
R++LD DGFR D
Sbjct: 191 RFWLDR-GVDGFRID 204
|
Oligo-1,6-glucosidase (EC 3.2.1.10) hydrolyzes the alpha-1,6-glucosidic linkage of isomaltooligosaccharides, pannose, and dextran. Unlike alpha-1,4-glucosidases (EC 3.2.1.20), it fails to hydrolyze the alpha-1,4-glucosidic bonds of maltosaccharides. Trehalose synthase (EC 5.4.99.16) catalyzes the isomerization of maltose to produce trehalulose. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 481 |
| >gnl|CDD|237052 PRK12313, PRK12313, glycogen branching enzyme; Provisional | Back alignment and domain information |
|---|
Score = 44.1 bits (105), Expect = 5e-04
Identities = 35/149 (23%), Positives = 61/149 (40%), Gaps = 27/149 (18%)
Query: 792 HVVCAAGDFNNWNREEFAYKKLDFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHGHLLD 851
VV GDFN+W + + G WE +P +G K + Q G+ ++
Sbjct: 53 SVV---GDFNDWRGNAHPLVRRESGVWEGFIPGAKEG-------QLYKYHISRQDGYQVE 102
Query: 852 RLSPWATYVTEPPVVGHAYEQRIWNPKPQDKHKW------TSSKPKKPDN--LKIYESHV 903
++ P+A Y P G A +W+ ++KW K + + IYE H+
Sbjct: 103 KIDPFAFYFEARP--GTA--SIVWDL---PEYKWKDGLWLARRKRWNALDRPISIYEVHL 155
Query: 904 G--ICTQEQKCASYEDFVRVVIPRIVKQG 930
G ++ + SY + +IP + + G
Sbjct: 156 GSWKRNEDGRPLSYRELADELIPYVKEMG 184
|
Length = 633 |
| >gnl|CDD|200453 cd11314, AmyAc_arch_bac_plant_AmyA, Alpha amylase catalytic domain found in archaeal, bacterial, and plant Alpha-amylases (also called 1,4-alpha-D-glucan-4-glucanohydrolase) | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 5e-04
Identities = 26/97 (26%), Positives = 44/97 (45%), Gaps = 20/97 (20%)
Query: 1033 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLW 1092
+G+ +L+ L+ H G+ V+ D+V +H ++ D G F P
Sbjct: 63 YGSEAELRSLIAALHAKGIKVIADIVINH--RSGPD-----TGE---DFGGAP------- 105
Query: 1093 DSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGV 1129
D +++ EV L + L W ++ FDG+RFD V
Sbjct: 106 D---LDHTNPEVQNDLKAWLNWLKNDIGFDGWRFDFV 139
|
AmyA (EC 3.2.1.1) catalyzes the hydrolysis of alpha-(1,4) glycosidic linkages of glycogen, starch, related polysaccharides, and some oligosaccharides. This group includes AmyA from bacteria, archaea, water fleas, and plants. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 302 |
| >gnl|CDD|200480 cd11341, AmyAc_Pullulanase_LD-like, Alpha amylase catalytic domain found in Pullulanase (also called dextrinase; alpha-dextrin endo-1,6-alpha glucosidase), limit dextrinase, and related proteins | Back alignment and domain information |
|---|
Score = 42.9 bits (102), Expect = 8e-04
Identities = 26/106 (24%), Positives = 47/106 (44%), Gaps = 34/106 (32%)
Query: 1039 LKYLVDECHKAGLYVLLDVVHSH---ASKNVLDGL--------NEFDGTQACFFHDGPRG 1087
K +V HK G+ V++DVV++H + + + + N DG F +G
Sbjct: 109 FKEMVQALHKNGIRVIMDVVYNHTYDSENSPFEKIVPGYYYRYNA-DGG----FSNGSGC 163
Query: 1088 ------THPLWDSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFD 1127
P+ V ++++ +L+++ EY+ DGFRFD
Sbjct: 164 GNDTASERPM------------VRKYIIDSLKYWAKEYKIDGFRFD 197
|
Pullulanase is an enzyme with action similar to that of isoamylase; it cleaves 1,6-alpha-glucosidic linkages in pullulan, amylopectin, and glycogen, and in alpha-and beta-amylase limit-dextrins of amylopectin and glycogen. Pullulanases are very similar to limit dextrinases, although they differ in their action on glycogen and the rate of hydrolysis of limit dextrins. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 406 |
| >gnl|CDD|200454 cd11315, AmyAc_bac1_AmyA, Alpha amylase catalytic domain found in bacterial Alpha-amylases (also called 1,4-alpha-D-glucan-4-glucanohydrolase) | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 9e-04
Identities = 26/115 (22%), Positives = 40/115 (34%), Gaps = 27/115 (23%)
Query: 1034 GTPEQLKYLVDECHKAGLYVLLDVVHSH--ASKNVLDGLNE--FDGTQACFFHDGPRGTH 1089
GT + K L HK G+ +++DVV +H + ++ L D G
Sbjct: 65 GTEDDFKALCAAAHKYGIKIIVDVVFNHMANEGSAIEDLWYPSADIELFSPEDFHGNGGI 124
Query: 1090 PLWDSRLFNYSEIEVLRFLLSNL------RWYLDEYQ-----------FDGFRFD 1127
W+ R +V + L L + + Q DGFRFD
Sbjct: 125 SNWNDRW------QVTQGRLGGLPDLNTENPAVQQQQKAYLKALVALGVDGFRFD 173
|
AmyA (EC 3.2.1.1) catalyzes the hydrolysis of alpha-(1,4) glycosidic linkages of glycogen, starch, related polysaccharides, and some oligosaccharides. This group includes Firmicutes, Proteobacteria, Actinobacteria, and Cyanobacteria. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 352 |
| >gnl|CDD|188150 TIGR01515, branching_enzym, alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase | Back alignment and domain information |
|---|
Score = 42.9 bits (101), Expect = 0.001
Identities = 39/156 (25%), Positives = 62/156 (39%), Gaps = 23/156 (14%)
Query: 794 VCAAGDFNNWNREEFAYKKL-DFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHGHLLDR 852
V AGDFN W+ E ++ D G WEL +P +G K + +G + +
Sbjct: 42 VRVAGDFNYWDGREHPMRRRNDNGIWELFIPGIGEG-------ELYKYEIVTNNGEIRLK 94
Query: 853 LSPWATYVTEPP-----VVGHAYEQRIWNPKPQDKHKWTSSKPKKPDNLKIYESHVG--I 905
P+A Y P V W + + + + +KP + IYE H+G
Sbjct: 95 ADPYAFYAEVRPNTASLVYNLEGYS--WQDQKWQEKRKAKTPYEKP--VSIYELHLGSWR 150
Query: 906 CTQEQKCASYEDFVRVVIPRIVKQGMAIPDKWIELL 941
+ + SY + +IP + + G IELL
Sbjct: 151 KHSDGRHLSYRELADQLIPYVKELGFT----HIELL 182
|
This model describes the glycogen branching enzymes which are responsible for the transfer of chains of approx. 7 alpha(1--4)-linked glucosyl residues to other similar chains (in new alpha(1--6) linkages) in the biosynthesis of glycogen. This enzyme is a member of the broader amylase family of starch hydrolases which fold as (beta/alpha)8 barrels, the so-called TIM-barrel structure. All of the sequences comprising the seed of this model have been experimentally characterized. (For instance,). This model encompasses both bacterial and eukaryotic species. No archaea have this enzyme, although Aquifex aolicus does. Two species, Bacillus thuringiensis and Clostridium perfringens have two sequences each which are annotated as amylases. These annotations are aparrently in error. GP|18143720 from C. perfringens, for instance, contains the note "674 aa, similar to gp:A14658_1 amylase (1,4-alpha-glucan branching enzyme (EC 2.4.1.18) ) from Bacillus thuringiensis (648 aa); 51.1% identity in 632 aa overlap." A branching enzyme from Porphyromonas gingivales, OMNI|PG1793, appears to be more closely related to the eukaryotic species (across a deep phylogenetic split) and may represent an instance of lateral transfer from this species' host. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here [Energy metabolism, Biosynthesis and degradation of polysaccharides]. Length = 618 |
| >gnl|CDD|236543 PRK09505, malS, alpha-amylase; Reviewed | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 0.001
Identities = 17/41 (41%), Positives = 23/41 (56%)
Query: 1033 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEF 1073
GT L+ LVDE H+ G+ +L DVV +H L + EF
Sbjct: 288 MGTEADLRTLVDEAHQRGIRILFDVVMNHTGYATLADMQEF 328
|
Length = 683 |
| >gnl|CDD|200486 cd11348, AmyAc_2, Alpha amylase catalytic domain found in an uncharacterized protein family | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 0.001
Identities = 17/31 (54%), Positives = 21/31 (67%)
Query: 1033 FGTPEQLKYLVDECHKAGLYVLLDVVHSHAS 1063
+GT E L L DE HK G++VLLD+V H S
Sbjct: 66 YGTNEDLVRLFDEAHKRGIHVLLDLVPGHTS 96
|
The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The catalytic triad (DED) is not present here. The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 429 |
| >gnl|CDD|200460 cd11321, AmyAc_bac_euk_BE, Alpha amylase catalytic domain found in bacterial and eukaryotic branching enzymes | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 0.002
Identities = 12/20 (60%), Positives = 14/20 (70%)
Query: 123 FGTPEQLKYLVDECHKAGLF 142
FGTPE LKYL+D H G+
Sbjct: 84 FGTPEDLKYLIDTAHGMGIA 103
|
Branching enzymes (BEs) catalyze the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain, and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends, glycogen is more reactive to synthesis and digestion as well as being more soluble. This group includes bacterial and eukaryotic proteins. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 406 |
| >gnl|CDD|200460 cd11321, AmyAc_bac_euk_BE, Alpha amylase catalytic domain found in bacterial and eukaryotic branching enzymes | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 0.002
Identities = 12/20 (60%), Positives = 14/20 (70%)
Query: 142 FGTPEQLKYLVDECHKAGLF 161
FGTPE LKYL+D H G+
Sbjct: 84 FGTPEDLKYLIDTAHGMGIA 103
|
Branching enzymes (BEs) catalyze the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain, and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends, glycogen is more reactive to synthesis and digestion as well as being more soluble. This group includes bacterial and eukaryotic proteins. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 406 |
| >gnl|CDD|200460 cd11321, AmyAc_bac_euk_BE, Alpha amylase catalytic domain found in bacterial and eukaryotic branching enzymes | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 0.002
Identities = 12/20 (60%), Positives = 14/20 (70%)
Query: 161 FGTPEQLKYLVDECHKAGLF 180
FGTPE LKYL+D H G+
Sbjct: 84 FGTPEDLKYLIDTAHGMGIA 103
|
Branching enzymes (BEs) catalyze the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain, and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends, glycogen is more reactive to synthesis and digestion as well as being more soluble. This group includes bacterial and eukaryotic proteins. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 406 |
| >gnl|CDD|200460 cd11321, AmyAc_bac_euk_BE, Alpha amylase catalytic domain found in bacterial and eukaryotic branching enzymes | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 0.002
Identities = 12/20 (60%), Positives = 14/20 (70%)
Query: 180 FGTPEQLKYLVDECHKAGLF 199
FGTPE LKYL+D H G+
Sbjct: 84 FGTPEDLKYLIDTAHGMGIA 103
|
Branching enzymes (BEs) catalyze the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain, and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends, glycogen is more reactive to synthesis and digestion as well as being more soluble. This group includes bacterial and eukaryotic proteins. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 406 |
| >gnl|CDD|200460 cd11321, AmyAc_bac_euk_BE, Alpha amylase catalytic domain found in bacterial and eukaryotic branching enzymes | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 0.002
Identities = 12/20 (60%), Positives = 14/20 (70%)
Query: 199 FGTPEQLKYLVDECHKAGLF 218
FGTPE LKYL+D H G+
Sbjct: 84 FGTPEDLKYLIDTAHGMGIA 103
|
Branching enzymes (BEs) catalyze the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain, and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends, glycogen is more reactive to synthesis and digestion as well as being more soluble. This group includes bacterial and eukaryotic proteins. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 406 |
| >gnl|CDD|200460 cd11321, AmyAc_bac_euk_BE, Alpha amylase catalytic domain found in bacterial and eukaryotic branching enzymes | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 0.002
Identities = 12/20 (60%), Positives = 14/20 (70%)
Query: 218 FGTPEQLKYLVDECHKAGLF 237
FGTPE LKYL+D H G+
Sbjct: 84 FGTPEDLKYLIDTAHGMGIA 103
|
Branching enzymes (BEs) catalyze the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain, and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends, glycogen is more reactive to synthesis and digestion as well as being more soluble. This group includes bacterial and eukaryotic proteins. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 406 |
| >gnl|CDD|200460 cd11321, AmyAc_bac_euk_BE, Alpha amylase catalytic domain found in bacterial and eukaryotic branching enzymes | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 0.002
Identities = 12/20 (60%), Positives = 14/20 (70%)
Query: 237 FGTPEQLKYLVDECHKAGLF 256
FGTPE LKYL+D H G+
Sbjct: 84 FGTPEDLKYLIDTAHGMGIA 103
|
Branching enzymes (BEs) catalyze the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain, and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends, glycogen is more reactive to synthesis and digestion as well as being more soluble. This group includes bacterial and eukaryotic proteins. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 406 |
| >gnl|CDD|200460 cd11321, AmyAc_bac_euk_BE, Alpha amylase catalytic domain found in bacterial and eukaryotic branching enzymes | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 0.002
Identities = 12/20 (60%), Positives = 14/20 (70%)
Query: 256 FGTPEQLKYLVDECHKAGLF 275
FGTPE LKYL+D H G+
Sbjct: 84 FGTPEDLKYLIDTAHGMGIA 103
|
Branching enzymes (BEs) catalyze the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain, and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends, glycogen is more reactive to synthesis and digestion as well as being more soluble. This group includes bacterial and eukaryotic proteins. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 406 |
| >gnl|CDD|200460 cd11321, AmyAc_bac_euk_BE, Alpha amylase catalytic domain found in bacterial and eukaryotic branching enzymes | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 0.002
Identities = 12/20 (60%), Positives = 14/20 (70%)
Query: 275 FGTPEQLKYLVDECHKAGLF 294
FGTPE LKYL+D H G+
Sbjct: 84 FGTPEDLKYLIDTAHGMGIA 103
|
Branching enzymes (BEs) catalyze the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain, and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends, glycogen is more reactive to synthesis and digestion as well as being more soluble. This group includes bacterial and eukaryotic proteins. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 406 |
| >gnl|CDD|200460 cd11321, AmyAc_bac_euk_BE, Alpha amylase catalytic domain found in bacterial and eukaryotic branching enzymes | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 0.002
Identities = 12/20 (60%), Positives = 14/20 (70%)
Query: 294 FGTPEQLKYLVDECHKAGLF 313
FGTPE LKYL+D H G+
Sbjct: 84 FGTPEDLKYLIDTAHGMGIA 103
|
Branching enzymes (BEs) catalyze the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain, and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends, glycogen is more reactive to synthesis and digestion as well as being more soluble. This group includes bacterial and eukaryotic proteins. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 406 |
| >gnl|CDD|200460 cd11321, AmyAc_bac_euk_BE, Alpha amylase catalytic domain found in bacterial and eukaryotic branching enzymes | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 0.002
Identities = 12/20 (60%), Positives = 14/20 (70%)
Query: 313 FGTPEQLKYLVDECHKAGLF 332
FGTPE LKYL+D H G+
Sbjct: 84 FGTPEDLKYLIDTAHGMGIA 103
|
Branching enzymes (BEs) catalyze the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain, and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends, glycogen is more reactive to synthesis and digestion as well as being more soluble. This group includes bacterial and eukaryotic proteins. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 406 |
| >gnl|CDD|200460 cd11321, AmyAc_bac_euk_BE, Alpha amylase catalytic domain found in bacterial and eukaryotic branching enzymes | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 0.002
Identities = 12/20 (60%), Positives = 14/20 (70%)
Query: 332 FGTPEQLKYLVDECHKAGLF 351
FGTPE LKYL+D H G+
Sbjct: 84 FGTPEDLKYLIDTAHGMGIA 103
|
Branching enzymes (BEs) catalyze the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain, and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends, glycogen is more reactive to synthesis and digestion as well as being more soluble. This group includes bacterial and eukaryotic proteins. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 406 |
| >gnl|CDD|200460 cd11321, AmyAc_bac_euk_BE, Alpha amylase catalytic domain found in bacterial and eukaryotic branching enzymes | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 0.002
Identities = 12/20 (60%), Positives = 14/20 (70%)
Query: 351 FGTPEQLKYLVDECHKAGLF 370
FGTPE LKYL+D H G+
Sbjct: 84 FGTPEDLKYLIDTAHGMGIA 103
|
Branching enzymes (BEs) catalyze the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain, and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends, glycogen is more reactive to synthesis and digestion as well as being more soluble. This group includes bacterial and eukaryotic proteins. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 406 |
| >gnl|CDD|200460 cd11321, AmyAc_bac_euk_BE, Alpha amylase catalytic domain found in bacterial and eukaryotic branching enzymes | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 0.002
Identities = 12/20 (60%), Positives = 14/20 (70%)
Query: 370 FGTPEQLKYLVDECHKAGLF 389
FGTPE LKYL+D H G+
Sbjct: 84 FGTPEDLKYLIDTAHGMGIA 103
|
Branching enzymes (BEs) catalyze the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain, and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends, glycogen is more reactive to synthesis and digestion as well as being more soluble. This group includes bacterial and eukaryotic proteins. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 406 |
| >gnl|CDD|200460 cd11321, AmyAc_bac_euk_BE, Alpha amylase catalytic domain found in bacterial and eukaryotic branching enzymes | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 0.002
Identities = 12/20 (60%), Positives = 14/20 (70%)
Query: 389 FGTPEQLKYLVDECHKAGLF 408
FGTPE LKYL+D H G+
Sbjct: 84 FGTPEDLKYLIDTAHGMGIA 103
|
Branching enzymes (BEs) catalyze the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain, and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends, glycogen is more reactive to synthesis and digestion as well as being more soluble. This group includes bacterial and eukaryotic proteins. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 406 |
| >gnl|CDD|200460 cd11321, AmyAc_bac_euk_BE, Alpha amylase catalytic domain found in bacterial and eukaryotic branching enzymes | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 0.002
Identities = 12/20 (60%), Positives = 14/20 (70%)
Query: 408 FGTPEQLKYLVDECHKAGLF 427
FGTPE LKYL+D H G+
Sbjct: 84 FGTPEDLKYLIDTAHGMGIA 103
|
Branching enzymes (BEs) catalyze the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain, and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends, glycogen is more reactive to synthesis and digestion as well as being more soluble. This group includes bacterial and eukaryotic proteins. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 406 |
| >gnl|CDD|200460 cd11321, AmyAc_bac_euk_BE, Alpha amylase catalytic domain found in bacterial and eukaryotic branching enzymes | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 0.002
Identities = 12/20 (60%), Positives = 14/20 (70%)
Query: 427 FGTPEQLKYLVDECHKAGLF 446
FGTPE LKYL+D H G+
Sbjct: 84 FGTPEDLKYLIDTAHGMGIA 103
|
Branching enzymes (BEs) catalyze the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain, and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends, glycogen is more reactive to synthesis and digestion as well as being more soluble. This group includes bacterial and eukaryotic proteins. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 406 |
| >gnl|CDD|200460 cd11321, AmyAc_bac_euk_BE, Alpha amylase catalytic domain found in bacterial and eukaryotic branching enzymes | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 0.002
Identities = 12/20 (60%), Positives = 14/20 (70%)
Query: 446 FGTPEQLKYLVDECHKAGLF 465
FGTPE LKYL+D H G+
Sbjct: 84 FGTPEDLKYLIDTAHGMGIA 103
|
Branching enzymes (BEs) catalyze the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain, and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends, glycogen is more reactive to synthesis and digestion as well as being more soluble. This group includes bacterial and eukaryotic proteins. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 406 |
| >gnl|CDD|200460 cd11321, AmyAc_bac_euk_BE, Alpha amylase catalytic domain found in bacterial and eukaryotic branching enzymes | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 0.002
Identities = 12/20 (60%), Positives = 14/20 (70%)
Query: 465 FGTPEQLKYLVDECHKAGLF 484
FGTPE LKYL+D H G+
Sbjct: 84 FGTPEDLKYLIDTAHGMGIA 103
|
Branching enzymes (BEs) catalyze the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain, and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends, glycogen is more reactive to synthesis and digestion as well as being more soluble. This group includes bacterial and eukaryotic proteins. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 406 |
| >gnl|CDD|200460 cd11321, AmyAc_bac_euk_BE, Alpha amylase catalytic domain found in bacterial and eukaryotic branching enzymes | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 0.002
Identities = 12/20 (60%), Positives = 14/20 (70%)
Query: 484 FGTPEQLKYLVDECHKAGLF 503
FGTPE LKYL+D H G+
Sbjct: 84 FGTPEDLKYLIDTAHGMGIA 103
|
Branching enzymes (BEs) catalyze the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain, and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends, glycogen is more reactive to synthesis and digestion as well as being more soluble. This group includes bacterial and eukaryotic proteins. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 406 |
| >gnl|CDD|200460 cd11321, AmyAc_bac_euk_BE, Alpha amylase catalytic domain found in bacterial and eukaryotic branching enzymes | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 0.002
Identities = 12/20 (60%), Positives = 14/20 (70%)
Query: 503 FGTPEQLKYLVDECHKAGLF 522
FGTPE LKYL+D H G+
Sbjct: 84 FGTPEDLKYLIDTAHGMGIA 103
|
Branching enzymes (BEs) catalyze the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain, and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends, glycogen is more reactive to synthesis and digestion as well as being more soluble. This group includes bacterial and eukaryotic proteins. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 406 |
| >gnl|CDD|200460 cd11321, AmyAc_bac_euk_BE, Alpha amylase catalytic domain found in bacterial and eukaryotic branching enzymes | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 0.002
Identities = 12/20 (60%), Positives = 14/20 (70%)
Query: 522 FGTPEQLKYLVDECHKAGLF 541
FGTPE LKYL+D H G+
Sbjct: 84 FGTPEDLKYLIDTAHGMGIA 103
|
Branching enzymes (BEs) catalyze the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain, and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends, glycogen is more reactive to synthesis and digestion as well as being more soluble. This group includes bacterial and eukaryotic proteins. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 406 |
| >gnl|CDD|200460 cd11321, AmyAc_bac_euk_BE, Alpha amylase catalytic domain found in bacterial and eukaryotic branching enzymes | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 0.002
Identities = 12/20 (60%), Positives = 14/20 (70%)
Query: 541 FGTPEQLKYLVDECHKAGLF 560
FGTPE LKYL+D H G+
Sbjct: 84 FGTPEDLKYLIDTAHGMGIA 103
|
Branching enzymes (BEs) catalyze the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain, and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends, glycogen is more reactive to synthesis and digestion as well as being more soluble. This group includes bacterial and eukaryotic proteins. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 406 |
| >gnl|CDD|200460 cd11321, AmyAc_bac_euk_BE, Alpha amylase catalytic domain found in bacterial and eukaryotic branching enzymes | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 0.002
Identities = 12/20 (60%), Positives = 14/20 (70%)
Query: 560 FGTPEQLKYLVDECHKAGLF 579
FGTPE LKYL+D H G+
Sbjct: 84 FGTPEDLKYLIDTAHGMGIA 103
|
Branching enzymes (BEs) catalyze the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain, and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends, glycogen is more reactive to synthesis and digestion as well as being more soluble. This group includes bacterial and eukaryotic proteins. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 406 |
| >gnl|CDD|200460 cd11321, AmyAc_bac_euk_BE, Alpha amylase catalytic domain found in bacterial and eukaryotic branching enzymes | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 0.002
Identities = 12/20 (60%), Positives = 14/20 (70%)
Query: 579 FGTPEQLKYLVDECHKAGLF 598
FGTPE LKYL+D H G+
Sbjct: 84 FGTPEDLKYLIDTAHGMGIA 103
|
Branching enzymes (BEs) catalyze the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain, and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends, glycogen is more reactive to synthesis and digestion as well as being more soluble. This group includes bacterial and eukaryotic proteins. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 406 |
| >gnl|CDD|200460 cd11321, AmyAc_bac_euk_BE, Alpha amylase catalytic domain found in bacterial and eukaryotic branching enzymes | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 0.002
Identities = 12/20 (60%), Positives = 14/20 (70%)
Query: 598 FGTPEQLKYLVDECHKAGLF 617
FGTPE LKYL+D H G+
Sbjct: 84 FGTPEDLKYLIDTAHGMGIA 103
|
Branching enzymes (BEs) catalyze the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain, and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends, glycogen is more reactive to synthesis and digestion as well as being more soluble. This group includes bacterial and eukaryotic proteins. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 406 |
| >gnl|CDD|200460 cd11321, AmyAc_bac_euk_BE, Alpha amylase catalytic domain found in bacterial and eukaryotic branching enzymes | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 0.002
Identities = 12/20 (60%), Positives = 14/20 (70%)
Query: 617 FGTPEQLKYLVDECHKAGLF 636
FGTPE LKYL+D H G+
Sbjct: 84 FGTPEDLKYLIDTAHGMGIA 103
|
Branching enzymes (BEs) catalyze the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain, and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends, glycogen is more reactive to synthesis and digestion as well as being more soluble. This group includes bacterial and eukaryotic proteins. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 406 |
| >gnl|CDD|200460 cd11321, AmyAc_bac_euk_BE, Alpha amylase catalytic domain found in bacterial and eukaryotic branching enzymes | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 0.002
Identities = 12/20 (60%), Positives = 14/20 (70%)
Query: 636 FGTPEQLKYLVDECHKAGLF 655
FGTPE LKYL+D H G+
Sbjct: 84 FGTPEDLKYLIDTAHGMGIA 103
|
Branching enzymes (BEs) catalyze the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain, and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends, glycogen is more reactive to synthesis and digestion as well as being more soluble. This group includes bacterial and eukaryotic proteins. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 406 |
| >gnl|CDD|200460 cd11321, AmyAc_bac_euk_BE, Alpha amylase catalytic domain found in bacterial and eukaryotic branching enzymes | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 0.002
Identities = 12/20 (60%), Positives = 14/20 (70%)
Query: 655 FGTPEQLKYLVDECHKAGLF 674
FGTPE LKYL+D H G+
Sbjct: 84 FGTPEDLKYLIDTAHGMGIA 103
|
Branching enzymes (BEs) catalyze the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain, and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends, glycogen is more reactive to synthesis and digestion as well as being more soluble. This group includes bacterial and eukaryotic proteins. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 406 |
| >gnl|CDD|200460 cd11321, AmyAc_bac_euk_BE, Alpha amylase catalytic domain found in bacterial and eukaryotic branching enzymes | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 0.002
Identities = 12/20 (60%), Positives = 14/20 (70%)
Query: 674 FGTPEQLKYLVDECHKAGLF 693
FGTPE LKYL+D H G+
Sbjct: 84 FGTPEDLKYLIDTAHGMGIA 103
|
Branching enzymes (BEs) catalyze the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain, and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends, glycogen is more reactive to synthesis and digestion as well as being more soluble. This group includes bacterial and eukaryotic proteins. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 406 |
| >gnl|CDD|200460 cd11321, AmyAc_bac_euk_BE, Alpha amylase catalytic domain found in bacterial and eukaryotic branching enzymes | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 0.002
Identities = 12/20 (60%), Positives = 14/20 (70%)
Query: 693 FGTPEQLKYLVDECHKAGLF 712
FGTPE LKYL+D H G+
Sbjct: 84 FGTPEDLKYLIDTAHGMGIA 103
|
Branching enzymes (BEs) catalyze the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain, and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends, glycogen is more reactive to synthesis and digestion as well as being more soluble. This group includes bacterial and eukaryotic proteins. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 406 |
| >gnl|CDD|200460 cd11321, AmyAc_bac_euk_BE, Alpha amylase catalytic domain found in bacterial and eukaryotic branching enzymes | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 0.002
Identities = 12/20 (60%), Positives = 14/20 (70%)
Query: 712 FGTPEQLKYLVDECHKAGLF 731
FGTPE LKYL+D H G+
Sbjct: 84 FGTPEDLKYLIDTAHGMGIA 103
|
Branching enzymes (BEs) catalyze the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain, and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends, glycogen is more reactive to synthesis and digestion as well as being more soluble. This group includes bacterial and eukaryotic proteins. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 406 |
| >gnl|CDD|200460 cd11321, AmyAc_bac_euk_BE, Alpha amylase catalytic domain found in bacterial and eukaryotic branching enzymes | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 0.002
Identities = 12/20 (60%), Positives = 14/20 (70%)
Query: 731 FGTPEQLKYLVDECHKAGLF 750
FGTPE LKYL+D H G+
Sbjct: 84 FGTPEDLKYLIDTAHGMGIA 103
|
Branching enzymes (BEs) catalyze the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain, and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends, glycogen is more reactive to synthesis and digestion as well as being more soluble. This group includes bacterial and eukaryotic proteins. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 406 |
| >gnl|CDD|200460 cd11321, AmyAc_bac_euk_BE, Alpha amylase catalytic domain found in bacterial and eukaryotic branching enzymes | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 0.002
Identities = 12/20 (60%), Positives = 14/20 (70%)
Query: 750 FGTPEQLKYLVDECHKAGLF 769
FGTPE LKYL+D H G+
Sbjct: 84 FGTPEDLKYLIDTAHGMGIA 103
|
Branching enzymes (BEs) catalyze the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain, and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends, glycogen is more reactive to synthesis and digestion as well as being more soluble. This group includes bacterial and eukaryotic proteins. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 406 |
| >gnl|CDD|235445 PRK05402, PRK05402, glycogen branching enzyme; Provisional | Back alignment and domain information |
|---|
Score = 42.1 bits (100), Expect = 0.002
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 123 FGTPEQLKYLVDECHKAGL 141
FGTP+ +Y VD CH+AG+
Sbjct: 311 FGTPDDFRYFVDACHQAGI 329
|
Length = 726 |
| >gnl|CDD|235445 PRK05402, PRK05402, glycogen branching enzyme; Provisional | Back alignment and domain information |
|---|
Score = 42.1 bits (100), Expect = 0.002
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 142 FGTPEQLKYLVDECHKAGL 160
FGTP+ +Y VD CH+AG+
Sbjct: 311 FGTPDDFRYFVDACHQAGI 329
|
Length = 726 |
| >gnl|CDD|235445 PRK05402, PRK05402, glycogen branching enzyme; Provisional | Back alignment and domain information |
|---|
Score = 42.1 bits (100), Expect = 0.002
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 161 FGTPEQLKYLVDECHKAGL 179
FGTP+ +Y VD CH+AG+
Sbjct: 311 FGTPDDFRYFVDACHQAGI 329
|
Length = 726 |
| >gnl|CDD|235445 PRK05402, PRK05402, glycogen branching enzyme; Provisional | Back alignment and domain information |
|---|
Score = 42.1 bits (100), Expect = 0.002
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 180 FGTPEQLKYLVDECHKAGL 198
FGTP+ +Y VD CH+AG+
Sbjct: 311 FGTPDDFRYFVDACHQAGI 329
|
Length = 726 |
| >gnl|CDD|235445 PRK05402, PRK05402, glycogen branching enzyme; Provisional | Back alignment and domain information |
|---|
Score = 42.1 bits (100), Expect = 0.002
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 199 FGTPEQLKYLVDECHKAGL 217
FGTP+ +Y VD CH+AG+
Sbjct: 311 FGTPDDFRYFVDACHQAGI 329
|
Length = 726 |
| >gnl|CDD|235445 PRK05402, PRK05402, glycogen branching enzyme; Provisional | Back alignment and domain information |
|---|
Score = 42.1 bits (100), Expect = 0.002
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 218 FGTPEQLKYLVDECHKAGL 236
FGTP+ +Y VD CH+AG+
Sbjct: 311 FGTPDDFRYFVDACHQAGI 329
|
Length = 726 |
| >gnl|CDD|235445 PRK05402, PRK05402, glycogen branching enzyme; Provisional | Back alignment and domain information |
|---|
Score = 42.1 bits (100), Expect = 0.002
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 237 FGTPEQLKYLVDECHKAGL 255
FGTP+ +Y VD CH+AG+
Sbjct: 311 FGTPDDFRYFVDACHQAGI 329
|
Length = 726 |
| >gnl|CDD|235445 PRK05402, PRK05402, glycogen branching enzyme; Provisional | Back alignment and domain information |
|---|
Score = 42.1 bits (100), Expect = 0.002
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 256 FGTPEQLKYLVDECHKAGL 274
FGTP+ +Y VD CH+AG+
Sbjct: 311 FGTPDDFRYFVDACHQAGI 329
|
Length = 726 |
| >gnl|CDD|235445 PRK05402, PRK05402, glycogen branching enzyme; Provisional | Back alignment and domain information |
|---|
Score = 42.1 bits (100), Expect = 0.002
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 275 FGTPEQLKYLVDECHKAGL 293
FGTP+ +Y VD CH+AG+
Sbjct: 311 FGTPDDFRYFVDACHQAGI 329
|
Length = 726 |
| >gnl|CDD|235445 PRK05402, PRK05402, glycogen branching enzyme; Provisional | Back alignment and domain information |
|---|
Score = 42.1 bits (100), Expect = 0.002
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 294 FGTPEQLKYLVDECHKAGL 312
FGTP+ +Y VD CH+AG+
Sbjct: 311 FGTPDDFRYFVDACHQAGI 329
|
Length = 726 |
| >gnl|CDD|235445 PRK05402, PRK05402, glycogen branching enzyme; Provisional | Back alignment and domain information |
|---|
Score = 42.1 bits (100), Expect = 0.002
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 313 FGTPEQLKYLVDECHKAGL 331
FGTP+ +Y VD CH+AG+
Sbjct: 311 FGTPDDFRYFVDACHQAGI 329
|
Length = 726 |
| >gnl|CDD|235445 PRK05402, PRK05402, glycogen branching enzyme; Provisional | Back alignment and domain information |
|---|
Score = 42.1 bits (100), Expect = 0.002
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 332 FGTPEQLKYLVDECHKAGL 350
FGTP+ +Y VD CH+AG+
Sbjct: 311 FGTPDDFRYFVDACHQAGI 329
|
Length = 726 |
| >gnl|CDD|235445 PRK05402, PRK05402, glycogen branching enzyme; Provisional | Back alignment and domain information |
|---|
Score = 42.1 bits (100), Expect = 0.002
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 351 FGTPEQLKYLVDECHKAGL 369
FGTP+ +Y VD CH+AG+
Sbjct: 311 FGTPDDFRYFVDACHQAGI 329
|
Length = 726 |
| >gnl|CDD|235445 PRK05402, PRK05402, glycogen branching enzyme; Provisional | Back alignment and domain information |
|---|
Score = 42.1 bits (100), Expect = 0.002
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 370 FGTPEQLKYLVDECHKAGL 388
FGTP+ +Y VD CH+AG+
Sbjct: 311 FGTPDDFRYFVDACHQAGI 329
|
Length = 726 |
| >gnl|CDD|235445 PRK05402, PRK05402, glycogen branching enzyme; Provisional | Back alignment and domain information |
|---|
Score = 42.1 bits (100), Expect = 0.002
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 389 FGTPEQLKYLVDECHKAGL 407
FGTP+ +Y VD CH+AG+
Sbjct: 311 FGTPDDFRYFVDACHQAGI 329
|
Length = 726 |
| >gnl|CDD|235445 PRK05402, PRK05402, glycogen branching enzyme; Provisional | Back alignment and domain information |
|---|
Score = 42.1 bits (100), Expect = 0.002
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 408 FGTPEQLKYLVDECHKAGL 426
FGTP+ +Y VD CH+AG+
Sbjct: 311 FGTPDDFRYFVDACHQAGI 329
|
Length = 726 |
| >gnl|CDD|235445 PRK05402, PRK05402, glycogen branching enzyme; Provisional | Back alignment and domain information |
|---|
Score = 42.1 bits (100), Expect = 0.002
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 427 FGTPEQLKYLVDECHKAGL 445
FGTP+ +Y VD CH+AG+
Sbjct: 311 FGTPDDFRYFVDACHQAGI 329
|
Length = 726 |
| >gnl|CDD|235445 PRK05402, PRK05402, glycogen branching enzyme; Provisional | Back alignment and domain information |
|---|
Score = 42.1 bits (100), Expect = 0.002
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 446 FGTPEQLKYLVDECHKAGL 464
FGTP+ +Y VD CH+AG+
Sbjct: 311 FGTPDDFRYFVDACHQAGI 329
|
Length = 726 |
| >gnl|CDD|235445 PRK05402, PRK05402, glycogen branching enzyme; Provisional | Back alignment and domain information |
|---|
Score = 42.1 bits (100), Expect = 0.002
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 465 FGTPEQLKYLVDECHKAGL 483
FGTP+ +Y VD CH+AG+
Sbjct: 311 FGTPDDFRYFVDACHQAGI 329
|
Length = 726 |
| >gnl|CDD|235445 PRK05402, PRK05402, glycogen branching enzyme; Provisional | Back alignment and domain information |
|---|
Score = 42.1 bits (100), Expect = 0.002
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 484 FGTPEQLKYLVDECHKAGL 502
FGTP+ +Y VD CH+AG+
Sbjct: 311 FGTPDDFRYFVDACHQAGI 329
|
Length = 726 |
| >gnl|CDD|235445 PRK05402, PRK05402, glycogen branching enzyme; Provisional | Back alignment and domain information |
|---|
Score = 42.1 bits (100), Expect = 0.002
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 503 FGTPEQLKYLVDECHKAGL 521
FGTP+ +Y VD CH+AG+
Sbjct: 311 FGTPDDFRYFVDACHQAGI 329
|
Length = 726 |
| >gnl|CDD|235445 PRK05402, PRK05402, glycogen branching enzyme; Provisional | Back alignment and domain information |
|---|
Score = 42.1 bits (100), Expect = 0.002
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 522 FGTPEQLKYLVDECHKAGL 540
FGTP+ +Y VD CH+AG+
Sbjct: 311 FGTPDDFRYFVDACHQAGI 329
|
Length = 726 |
| >gnl|CDD|235445 PRK05402, PRK05402, glycogen branching enzyme; Provisional | Back alignment and domain information |
|---|
Score = 42.1 bits (100), Expect = 0.002
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 541 FGTPEQLKYLVDECHKAGL 559
FGTP+ +Y VD CH+AG+
Sbjct: 311 FGTPDDFRYFVDACHQAGI 329
|
Length = 726 |
| >gnl|CDD|235445 PRK05402, PRK05402, glycogen branching enzyme; Provisional | Back alignment and domain information |
|---|
Score = 42.1 bits (100), Expect = 0.002
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 560 FGTPEQLKYLVDECHKAGL 578
FGTP+ +Y VD CH+AG+
Sbjct: 311 FGTPDDFRYFVDACHQAGI 329
|
Length = 726 |
| >gnl|CDD|235445 PRK05402, PRK05402, glycogen branching enzyme; Provisional | Back alignment and domain information |
|---|
Score = 42.1 bits (100), Expect = 0.002
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 579 FGTPEQLKYLVDECHKAGL 597
FGTP+ +Y VD CH+AG+
Sbjct: 311 FGTPDDFRYFVDACHQAGI 329
|
Length = 726 |
| >gnl|CDD|235445 PRK05402, PRK05402, glycogen branching enzyme; Provisional | Back alignment and domain information |
|---|
Score = 42.1 bits (100), Expect = 0.002
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 598 FGTPEQLKYLVDECHKAGL 616
FGTP+ +Y VD CH+AG+
Sbjct: 311 FGTPDDFRYFVDACHQAGI 329
|
Length = 726 |
| >gnl|CDD|235445 PRK05402, PRK05402, glycogen branching enzyme; Provisional | Back alignment and domain information |
|---|
Score = 42.1 bits (100), Expect = 0.002
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 617 FGTPEQLKYLVDECHKAGL 635
FGTP+ +Y VD CH+AG+
Sbjct: 311 FGTPDDFRYFVDACHQAGI 329
|
Length = 726 |
| >gnl|CDD|235445 PRK05402, PRK05402, glycogen branching enzyme; Provisional | Back alignment and domain information |
|---|
Score = 42.1 bits (100), Expect = 0.002
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 636 FGTPEQLKYLVDECHKAGL 654
FGTP+ +Y VD CH+AG+
Sbjct: 311 FGTPDDFRYFVDACHQAGI 329
|
Length = 726 |
| >gnl|CDD|235445 PRK05402, PRK05402, glycogen branching enzyme; Provisional | Back alignment and domain information |
|---|
Score = 42.1 bits (100), Expect = 0.002
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 655 FGTPEQLKYLVDECHKAGL 673
FGTP+ +Y VD CH+AG+
Sbjct: 311 FGTPDDFRYFVDACHQAGI 329
|
Length = 726 |
| >gnl|CDD|235445 PRK05402, PRK05402, glycogen branching enzyme; Provisional | Back alignment and domain information |
|---|
Score = 42.1 bits (100), Expect = 0.002
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 674 FGTPEQLKYLVDECHKAGL 692
FGTP+ +Y VD CH+AG+
Sbjct: 311 FGTPDDFRYFVDACHQAGI 329
|
Length = 726 |
| >gnl|CDD|235445 PRK05402, PRK05402, glycogen branching enzyme; Provisional | Back alignment and domain information |
|---|
Score = 42.1 bits (100), Expect = 0.002
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 693 FGTPEQLKYLVDECHKAGL 711
FGTP+ +Y VD CH+AG+
Sbjct: 311 FGTPDDFRYFVDACHQAGI 329
|
Length = 726 |
| >gnl|CDD|235445 PRK05402, PRK05402, glycogen branching enzyme; Provisional | Back alignment and domain information |
|---|
Score = 42.1 bits (100), Expect = 0.002
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 712 FGTPEQLKYLVDECHKAGL 730
FGTP+ +Y VD CH+AG+
Sbjct: 311 FGTPDDFRYFVDACHQAGI 329
|
Length = 726 |
| >gnl|CDD|235445 PRK05402, PRK05402, glycogen branching enzyme; Provisional | Back alignment and domain information |
|---|
Score = 42.1 bits (100), Expect = 0.002
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 731 FGTPEQLKYLVDECHKAGL 749
FGTP+ +Y VD CH+AG+
Sbjct: 311 FGTPDDFRYFVDACHQAGI 329
|
Length = 726 |
| >gnl|CDD|235445 PRK05402, PRK05402, glycogen branching enzyme; Provisional | Back alignment and domain information |
|---|
Score = 42.1 bits (100), Expect = 0.002
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 750 FGTPEQLKYLVDECHKAGL 768
FGTP+ +Y VD CH+AG+
Sbjct: 311 FGTPDDFRYFVDACHQAGI 329
|
Length = 726 |
| >gnl|CDD|235445 PRK05402, PRK05402, glycogen branching enzyme; Provisional | Back alignment and domain information |
|---|
Score = 42.1 bits (100), Expect = 0.002
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 769 FGTPEQLKYLVDECHKAGL 787
FGTP+ +Y VD CH+AG+
Sbjct: 311 FGTPDDFRYFVDACHQAGI 329
|
Length = 726 |
| >gnl|CDD|237794 PRK14705, PRK14705, glycogen branching enzyme; Provisional | Back alignment and domain information |
|---|
Score = 42.7 bits (100), Expect = 0.002
Identities = 30/112 (26%), Positives = 50/112 (44%), Gaps = 16/112 (14%)
Query: 798 GDFNNWNREEFAYKKL-DFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHGHLLDRLSPW 856
GDFN W+ E + + L G WEL +P G+C K + + G +++ P
Sbjct: 656 GDFNGWDGREHSMRSLGSSGVWELFIPGVVAGAC-------YKFEILTKAGQWVEKADPL 708
Query: 857 ATYVTEPPVVGHAYEQRIWNPKPQDK-HKWTSSKPKK-PDN--LKIYESHVG 904
A PP+ R+ K +W S++ ++ P N + +YE H+G
Sbjct: 709 AFGTEVPPLTA----SRVVEASYAFKDAEWMSARAERDPHNSPMSVYEVHLG 756
|
Length = 1224 |
| >gnl|CDD|200469 cd11330, AmyAc_OligoGlu, Alpha amylase catalytic domain found in oligo-1,6-glucosidase (also called isomaltase; sucrase-isomaltase; alpha-limit dextrinase) and related proteins | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 0.002
Identities = 37/140 (26%), Positives = 49/140 (35%), Gaps = 43/140 (30%)
Query: 1032 LFGTPEQLKYLVDECHKAGLYVLLDVVHSHAS-------KNVLDGLNEF----------- 1073
LFGT + LV H GL V++D V SH S ++ N
Sbjct: 71 LFGTLDDFDRLVARAHALGLKVMIDQVLSHTSDQHPWFEESRQSRDNPKADWYVWADPKP 130
Query: 1074 DGT-----QACFFHDGPRGTHPLWDSRL--------------FNYSEIEVLRFLLSNLRW 1114
DG+ + F G WD R N+ EV LL R+
Sbjct: 131 DGSPPNNWLSVF--GGSAWQ---WDPRRGQYYLHNFLPSQPDLNFHNPEVQDALLDVARF 185
Query: 1115 YLDEYQFDGFRFDGVTSMLY 1134
+LD DGFR D V ++
Sbjct: 186 WLDR-GVDGFRLDAVNFYMH 204
|
Oligo-1,6-glucosidase (EC 3.2.1.10) hydrolyzes the alpha-1,6-glucosidic linkage of isomalto-oligosaccharides, pannose, and dextran. Unlike alpha-1,4-glucosidases (EC 3.2.1.20), it fails to hydrolyze the alpha-1,4-glucosidic bonds of maltosaccharides. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 472 |
| >gnl|CDD|235152 PRK03705, PRK03705, glycogen debranching enzyme; Provisional | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 0.003
Identities = 30/96 (31%), Positives = 47/96 (48%), Gaps = 8/96 (8%)
Query: 1043 VDECHKAGLYVLLDVVHSHASKNVLDG----LNEFDGTQACFFHDGPRGTHPLWDS--RL 1096
V HKAG+ V+LDVV +H+++ LDG L D ++ G + W
Sbjct: 248 VKALHKAGIEVILDVVFNHSAELDLDGPTLSLRGID--NRSYYWIREDGDYHNWTGCGNT 305
Query: 1097 FNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSM 1132
N S V+ + + LR++++ DGFRFD T +
Sbjct: 306 LNLSHPAVVDWAIDCLRYWVETCHVDGFRFDLATVL 341
|
Length = 658 |
| >gnl|CDD|200461 cd11322, AmyAc_Glg_BE, Alpha amylase catalytic domain found in the Glycogen branching enzyme (also called 1,4-alpha-glucan branching enzyme) | Back alignment and domain information |
|---|
Score = 40.6 bits (96), Expect = 0.004
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 123 FGTPEQLKYLVDECHKAGL 141
+GTP+ KY VD CH+AG+
Sbjct: 104 YGTPDDFKYFVDACHQAGI 122
|
The glycogen branching enzyme catalyzes the third step of glycogen biosynthesis by the cleavage of an alpha-(1,4)-glucosidic linkage and the formation a new alpha-(1,6)-branch by subsequent transfer of cleaved oligosaccharide. They are part of a group called branching enzymes which catalyze the formation of alpha-1,6 branch points in either glycogen or starch. This group includes proteins from bacteria, eukaryotes, and archaea. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 402 |
| >gnl|CDD|200461 cd11322, AmyAc_Glg_BE, Alpha amylase catalytic domain found in the Glycogen branching enzyme (also called 1,4-alpha-glucan branching enzyme) | Back alignment and domain information |
|---|
Score = 40.6 bits (96), Expect = 0.004
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 142 FGTPEQLKYLVDECHKAGL 160
+GTP+ KY VD CH+AG+
Sbjct: 104 YGTPDDFKYFVDACHQAGI 122
|
The glycogen branching enzyme catalyzes the third step of glycogen biosynthesis by the cleavage of an alpha-(1,4)-glucosidic linkage and the formation a new alpha-(1,6)-branch by subsequent transfer of cleaved oligosaccharide. They are part of a group called branching enzymes which catalyze the formation of alpha-1,6 branch points in either glycogen or starch. This group includes proteins from bacteria, eukaryotes, and archaea. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 402 |
| >gnl|CDD|200461 cd11322, AmyAc_Glg_BE, Alpha amylase catalytic domain found in the Glycogen branching enzyme (also called 1,4-alpha-glucan branching enzyme) | Back alignment and domain information |
|---|
Score = 40.6 bits (96), Expect = 0.004
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 161 FGTPEQLKYLVDECHKAGL 179
+GTP+ KY VD CH+AG+
Sbjct: 104 YGTPDDFKYFVDACHQAGI 122
|
The glycogen branching enzyme catalyzes the third step of glycogen biosynthesis by the cleavage of an alpha-(1,4)-glucosidic linkage and the formation a new alpha-(1,6)-branch by subsequent transfer of cleaved oligosaccharide. They are part of a group called branching enzymes which catalyze the formation of alpha-1,6 branch points in either glycogen or starch. This group includes proteins from bacteria, eukaryotes, and archaea. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 402 |
| >gnl|CDD|200461 cd11322, AmyAc_Glg_BE, Alpha amylase catalytic domain found in the Glycogen branching enzyme (also called 1,4-alpha-glucan branching enzyme) | Back alignment and domain information |
|---|
Score = 40.6 bits (96), Expect = 0.004
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 180 FGTPEQLKYLVDECHKAGL 198
+GTP+ KY VD CH+AG+
Sbjct: 104 YGTPDDFKYFVDACHQAGI 122
|
The glycogen branching enzyme catalyzes the third step of glycogen biosynthesis by the cleavage of an alpha-(1,4)-glucosidic linkage and the formation a new alpha-(1,6)-branch by subsequent transfer of cleaved oligosaccharide. They are part of a group called branching enzymes which catalyze the formation of alpha-1,6 branch points in either glycogen or starch. This group includes proteins from bacteria, eukaryotes, and archaea. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 402 |
| >gnl|CDD|200461 cd11322, AmyAc_Glg_BE, Alpha amylase catalytic domain found in the Glycogen branching enzyme (also called 1,4-alpha-glucan branching enzyme) | Back alignment and domain information |
|---|
Score = 40.6 bits (96), Expect = 0.004
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 199 FGTPEQLKYLVDECHKAGL 217
+GTP+ KY VD CH+AG+
Sbjct: 104 YGTPDDFKYFVDACHQAGI 122
|
The glycogen branching enzyme catalyzes the third step of glycogen biosynthesis by the cleavage of an alpha-(1,4)-glucosidic linkage and the formation a new alpha-(1,6)-branch by subsequent transfer of cleaved oligosaccharide. They are part of a group called branching enzymes which catalyze the formation of alpha-1,6 branch points in either glycogen or starch. This group includes proteins from bacteria, eukaryotes, and archaea. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 402 |
| >gnl|CDD|200461 cd11322, AmyAc_Glg_BE, Alpha amylase catalytic domain found in the Glycogen branching enzyme (also called 1,4-alpha-glucan branching enzyme) | Back alignment and domain information |
|---|
Score = 40.6 bits (96), Expect = 0.004
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 218 FGTPEQLKYLVDECHKAGL 236
+GTP+ KY VD CH+AG+
Sbjct: 104 YGTPDDFKYFVDACHQAGI 122
|
The glycogen branching enzyme catalyzes the third step of glycogen biosynthesis by the cleavage of an alpha-(1,4)-glucosidic linkage and the formation a new alpha-(1,6)-branch by subsequent transfer of cleaved oligosaccharide. They are part of a group called branching enzymes which catalyze the formation of alpha-1,6 branch points in either glycogen or starch. This group includes proteins from bacteria, eukaryotes, and archaea. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 402 |
| >gnl|CDD|200461 cd11322, AmyAc_Glg_BE, Alpha amylase catalytic domain found in the Glycogen branching enzyme (also called 1,4-alpha-glucan branching enzyme) | Back alignment and domain information |
|---|
Score = 40.6 bits (96), Expect = 0.004
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 237 FGTPEQLKYLVDECHKAGL 255
+GTP+ KY VD CH+AG+
Sbjct: 104 YGTPDDFKYFVDACHQAGI 122
|
The glycogen branching enzyme catalyzes the third step of glycogen biosynthesis by the cleavage of an alpha-(1,4)-glucosidic linkage and the formation a new alpha-(1,6)-branch by subsequent transfer of cleaved oligosaccharide. They are part of a group called branching enzymes which catalyze the formation of alpha-1,6 branch points in either glycogen or starch. This group includes proteins from bacteria, eukaryotes, and archaea. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 402 |
| >gnl|CDD|200461 cd11322, AmyAc_Glg_BE, Alpha amylase catalytic domain found in the Glycogen branching enzyme (also called 1,4-alpha-glucan branching enzyme) | Back alignment and domain information |
|---|
Score = 40.6 bits (96), Expect = 0.004
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 256 FGTPEQLKYLVDECHKAGL 274
+GTP+ KY VD CH+AG+
Sbjct: 104 YGTPDDFKYFVDACHQAGI 122
|
The glycogen branching enzyme catalyzes the third step of glycogen biosynthesis by the cleavage of an alpha-(1,4)-glucosidic linkage and the formation a new alpha-(1,6)-branch by subsequent transfer of cleaved oligosaccharide. They are part of a group called branching enzymes which catalyze the formation of alpha-1,6 branch points in either glycogen or starch. This group includes proteins from bacteria, eukaryotes, and archaea. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 402 |
| >gnl|CDD|200461 cd11322, AmyAc_Glg_BE, Alpha amylase catalytic domain found in the Glycogen branching enzyme (also called 1,4-alpha-glucan branching enzyme) | Back alignment and domain information |
|---|
Score = 40.6 bits (96), Expect = 0.004
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 275 FGTPEQLKYLVDECHKAGL 293
+GTP+ KY VD CH+AG+
Sbjct: 104 YGTPDDFKYFVDACHQAGI 122
|
The glycogen branching enzyme catalyzes the third step of glycogen biosynthesis by the cleavage of an alpha-(1,4)-glucosidic linkage and the formation a new alpha-(1,6)-branch by subsequent transfer of cleaved oligosaccharide. They are part of a group called branching enzymes which catalyze the formation of alpha-1,6 branch points in either glycogen or starch. This group includes proteins from bacteria, eukaryotes, and archaea. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 402 |
| >gnl|CDD|200461 cd11322, AmyAc_Glg_BE, Alpha amylase catalytic domain found in the Glycogen branching enzyme (also called 1,4-alpha-glucan branching enzyme) | Back alignment and domain information |
|---|
Score = 40.6 bits (96), Expect = 0.004
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 294 FGTPEQLKYLVDECHKAGL 312
+GTP+ KY VD CH+AG+
Sbjct: 104 YGTPDDFKYFVDACHQAGI 122
|
The glycogen branching enzyme catalyzes the third step of glycogen biosynthesis by the cleavage of an alpha-(1,4)-glucosidic linkage and the formation a new alpha-(1,6)-branch by subsequent transfer of cleaved oligosaccharide. They are part of a group called branching enzymes which catalyze the formation of alpha-1,6 branch points in either glycogen or starch. This group includes proteins from bacteria, eukaryotes, and archaea. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 402 |
| >gnl|CDD|200461 cd11322, AmyAc_Glg_BE, Alpha amylase catalytic domain found in the Glycogen branching enzyme (also called 1,4-alpha-glucan branching enzyme) | Back alignment and domain information |
|---|
Score = 40.6 bits (96), Expect = 0.004
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 313 FGTPEQLKYLVDECHKAGL 331
+GTP+ KY VD CH+AG+
Sbjct: 104 YGTPDDFKYFVDACHQAGI 122
|
The glycogen branching enzyme catalyzes the third step of glycogen biosynthesis by the cleavage of an alpha-(1,4)-glucosidic linkage and the formation a new alpha-(1,6)-branch by subsequent transfer of cleaved oligosaccharide. They are part of a group called branching enzymes which catalyze the formation of alpha-1,6 branch points in either glycogen or starch. This group includes proteins from bacteria, eukaryotes, and archaea. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 402 |
| >gnl|CDD|200461 cd11322, AmyAc_Glg_BE, Alpha amylase catalytic domain found in the Glycogen branching enzyme (also called 1,4-alpha-glucan branching enzyme) | Back alignment and domain information |
|---|
Score = 40.6 bits (96), Expect = 0.004
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 332 FGTPEQLKYLVDECHKAGL 350
+GTP+ KY VD CH+AG+
Sbjct: 104 YGTPDDFKYFVDACHQAGI 122
|
The glycogen branching enzyme catalyzes the third step of glycogen biosynthesis by the cleavage of an alpha-(1,4)-glucosidic linkage and the formation a new alpha-(1,6)-branch by subsequent transfer of cleaved oligosaccharide. They are part of a group called branching enzymes which catalyze the formation of alpha-1,6 branch points in either glycogen or starch. This group includes proteins from bacteria, eukaryotes, and archaea. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 402 |
| >gnl|CDD|200461 cd11322, AmyAc_Glg_BE, Alpha amylase catalytic domain found in the Glycogen branching enzyme (also called 1,4-alpha-glucan branching enzyme) | Back alignment and domain information |
|---|
Score = 40.6 bits (96), Expect = 0.004
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 351 FGTPEQLKYLVDECHKAGL 369
+GTP+ KY VD CH+AG+
Sbjct: 104 YGTPDDFKYFVDACHQAGI 122
|
The glycogen branching enzyme catalyzes the third step of glycogen biosynthesis by the cleavage of an alpha-(1,4)-glucosidic linkage and the formation a new alpha-(1,6)-branch by subsequent transfer of cleaved oligosaccharide. They are part of a group called branching enzymes which catalyze the formation of alpha-1,6 branch points in either glycogen or starch. This group includes proteins from bacteria, eukaryotes, and archaea. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 402 |
| >gnl|CDD|200461 cd11322, AmyAc_Glg_BE, Alpha amylase catalytic domain found in the Glycogen branching enzyme (also called 1,4-alpha-glucan branching enzyme) | Back alignment and domain information |
|---|
Score = 40.6 bits (96), Expect = 0.004
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 370 FGTPEQLKYLVDECHKAGL 388
+GTP+ KY VD CH+AG+
Sbjct: 104 YGTPDDFKYFVDACHQAGI 122
|
The glycogen branching enzyme catalyzes the third step of glycogen biosynthesis by the cleavage of an alpha-(1,4)-glucosidic linkage and the formation a new alpha-(1,6)-branch by subsequent transfer of cleaved oligosaccharide. They are part of a group called branching enzymes which catalyze the formation of alpha-1,6 branch points in either glycogen or starch. This group includes proteins from bacteria, eukaryotes, and archaea. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 402 |
| >gnl|CDD|200461 cd11322, AmyAc_Glg_BE, Alpha amylase catalytic domain found in the Glycogen branching enzyme (also called 1,4-alpha-glucan branching enzyme) | Back alignment and domain information |
|---|
Score = 40.6 bits (96), Expect = 0.004
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 389 FGTPEQLKYLVDECHKAGL 407
+GTP+ KY VD CH+AG+
Sbjct: 104 YGTPDDFKYFVDACHQAGI 122
|
The glycogen branching enzyme catalyzes the third step of glycogen biosynthesis by the cleavage of an alpha-(1,4)-glucosidic linkage and the formation a new alpha-(1,6)-branch by subsequent transfer of cleaved oligosaccharide. They are part of a group called branching enzymes which catalyze the formation of alpha-1,6 branch points in either glycogen or starch. This group includes proteins from bacteria, eukaryotes, and archaea. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 402 |
| >gnl|CDD|200461 cd11322, AmyAc_Glg_BE, Alpha amylase catalytic domain found in the Glycogen branching enzyme (also called 1,4-alpha-glucan branching enzyme) | Back alignment and domain information |
|---|
Score = 40.6 bits (96), Expect = 0.004
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 408 FGTPEQLKYLVDECHKAGL 426
+GTP+ KY VD CH+AG+
Sbjct: 104 YGTPDDFKYFVDACHQAGI 122
|
The glycogen branching enzyme catalyzes the third step of glycogen biosynthesis by the cleavage of an alpha-(1,4)-glucosidic linkage and the formation a new alpha-(1,6)-branch by subsequent transfer of cleaved oligosaccharide. They are part of a group called branching enzymes which catalyze the formation of alpha-1,6 branch points in either glycogen or starch. This group includes proteins from bacteria, eukaryotes, and archaea. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 402 |
| >gnl|CDD|200461 cd11322, AmyAc_Glg_BE, Alpha amylase catalytic domain found in the Glycogen branching enzyme (also called 1,4-alpha-glucan branching enzyme) | Back alignment and domain information |
|---|
Score = 40.6 bits (96), Expect = 0.004
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 427 FGTPEQLKYLVDECHKAGL 445
+GTP+ KY VD CH+AG+
Sbjct: 104 YGTPDDFKYFVDACHQAGI 122
|
The glycogen branching enzyme catalyzes the third step of glycogen biosynthesis by the cleavage of an alpha-(1,4)-glucosidic linkage and the formation a new alpha-(1,6)-branch by subsequent transfer of cleaved oligosaccharide. They are part of a group called branching enzymes which catalyze the formation of alpha-1,6 branch points in either glycogen or starch. This group includes proteins from bacteria, eukaryotes, and archaea. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 402 |
| >gnl|CDD|200461 cd11322, AmyAc_Glg_BE, Alpha amylase catalytic domain found in the Glycogen branching enzyme (also called 1,4-alpha-glucan branching enzyme) | Back alignment and domain information |
|---|
Score = 40.6 bits (96), Expect = 0.004
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 446 FGTPEQLKYLVDECHKAGL 464
+GTP+ KY VD CH+AG+
Sbjct: 104 YGTPDDFKYFVDACHQAGI 122
|
The glycogen branching enzyme catalyzes the third step of glycogen biosynthesis by the cleavage of an alpha-(1,4)-glucosidic linkage and the formation a new alpha-(1,6)-branch by subsequent transfer of cleaved oligosaccharide. They are part of a group called branching enzymes which catalyze the formation of alpha-1,6 branch points in either glycogen or starch. This group includes proteins from bacteria, eukaryotes, and archaea. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 402 |
| >gnl|CDD|200461 cd11322, AmyAc_Glg_BE, Alpha amylase catalytic domain found in the Glycogen branching enzyme (also called 1,4-alpha-glucan branching enzyme) | Back alignment and domain information |
|---|
Score = 40.6 bits (96), Expect = 0.004
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 465 FGTPEQLKYLVDECHKAGL 483
+GTP+ KY VD CH+AG+
Sbjct: 104 YGTPDDFKYFVDACHQAGI 122
|
The glycogen branching enzyme catalyzes the third step of glycogen biosynthesis by the cleavage of an alpha-(1,4)-glucosidic linkage and the formation a new alpha-(1,6)-branch by subsequent transfer of cleaved oligosaccharide. They are part of a group called branching enzymes which catalyze the formation of alpha-1,6 branch points in either glycogen or starch. This group includes proteins from bacteria, eukaryotes, and archaea. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 402 |
| >gnl|CDD|200461 cd11322, AmyAc_Glg_BE, Alpha amylase catalytic domain found in the Glycogen branching enzyme (also called 1,4-alpha-glucan branching enzyme) | Back alignment and domain information |
|---|
Score = 40.6 bits (96), Expect = 0.004
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 484 FGTPEQLKYLVDECHKAGL 502
+GTP+ KY VD CH+AG+
Sbjct: 104 YGTPDDFKYFVDACHQAGI 122
|
The glycogen branching enzyme catalyzes the third step of glycogen biosynthesis by the cleavage of an alpha-(1,4)-glucosidic linkage and the formation a new alpha-(1,6)-branch by subsequent transfer of cleaved oligosaccharide. They are part of a group called branching enzymes which catalyze the formation of alpha-1,6 branch points in either glycogen or starch. This group includes proteins from bacteria, eukaryotes, and archaea. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 402 |
| >gnl|CDD|200461 cd11322, AmyAc_Glg_BE, Alpha amylase catalytic domain found in the Glycogen branching enzyme (also called 1,4-alpha-glucan branching enzyme) | Back alignment and domain information |
|---|
Score = 40.6 bits (96), Expect = 0.004
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 503 FGTPEQLKYLVDECHKAGL 521
+GTP+ KY VD CH+AG+
Sbjct: 104 YGTPDDFKYFVDACHQAGI 122
|
The glycogen branching enzyme catalyzes the third step of glycogen biosynthesis by the cleavage of an alpha-(1,4)-glucosidic linkage and the formation a new alpha-(1,6)-branch by subsequent transfer of cleaved oligosaccharide. They are part of a group called branching enzymes which catalyze the formation of alpha-1,6 branch points in either glycogen or starch. This group includes proteins from bacteria, eukaryotes, and archaea. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 402 |
| >gnl|CDD|200461 cd11322, AmyAc_Glg_BE, Alpha amylase catalytic domain found in the Glycogen branching enzyme (also called 1,4-alpha-glucan branching enzyme) | Back alignment and domain information |
|---|
Score = 40.6 bits (96), Expect = 0.004
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 522 FGTPEQLKYLVDECHKAGL 540
+GTP+ KY VD CH+AG+
Sbjct: 104 YGTPDDFKYFVDACHQAGI 122
|
The glycogen branching enzyme catalyzes the third step of glycogen biosynthesis by the cleavage of an alpha-(1,4)-glucosidic linkage and the formation a new alpha-(1,6)-branch by subsequent transfer of cleaved oligosaccharide. They are part of a group called branching enzymes which catalyze the formation of alpha-1,6 branch points in either glycogen or starch. This group includes proteins from bacteria, eukaryotes, and archaea. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 402 |
| >gnl|CDD|200461 cd11322, AmyAc_Glg_BE, Alpha amylase catalytic domain found in the Glycogen branching enzyme (also called 1,4-alpha-glucan branching enzyme) | Back alignment and domain information |
|---|
Score = 40.6 bits (96), Expect = 0.004
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 541 FGTPEQLKYLVDECHKAGL 559
+GTP+ KY VD CH+AG+
Sbjct: 104 YGTPDDFKYFVDACHQAGI 122
|
The glycogen branching enzyme catalyzes the third step of glycogen biosynthesis by the cleavage of an alpha-(1,4)-glucosidic linkage and the formation a new alpha-(1,6)-branch by subsequent transfer of cleaved oligosaccharide. They are part of a group called branching enzymes which catalyze the formation of alpha-1,6 branch points in either glycogen or starch. This group includes proteins from bacteria, eukaryotes, and archaea. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 402 |
| >gnl|CDD|200461 cd11322, AmyAc_Glg_BE, Alpha amylase catalytic domain found in the Glycogen branching enzyme (also called 1,4-alpha-glucan branching enzyme) | Back alignment and domain information |
|---|
Score = 40.6 bits (96), Expect = 0.004
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 560 FGTPEQLKYLVDECHKAGL 578
+GTP+ KY VD CH+AG+
Sbjct: 104 YGTPDDFKYFVDACHQAGI 122
|
The glycogen branching enzyme catalyzes the third step of glycogen biosynthesis by the cleavage of an alpha-(1,4)-glucosidic linkage and the formation a new alpha-(1,6)-branch by subsequent transfer of cleaved oligosaccharide. They are part of a group called branching enzymes which catalyze the formation of alpha-1,6 branch points in either glycogen or starch. This group includes proteins from bacteria, eukaryotes, and archaea. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 402 |
| >gnl|CDD|200461 cd11322, AmyAc_Glg_BE, Alpha amylase catalytic domain found in the Glycogen branching enzyme (also called 1,4-alpha-glucan branching enzyme) | Back alignment and domain information |
|---|
Score = 40.6 bits (96), Expect = 0.004
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 579 FGTPEQLKYLVDECHKAGL 597
+GTP+ KY VD CH+AG+
Sbjct: 104 YGTPDDFKYFVDACHQAGI 122
|
The glycogen branching enzyme catalyzes the third step of glycogen biosynthesis by the cleavage of an alpha-(1,4)-glucosidic linkage and the formation a new alpha-(1,6)-branch by subsequent transfer of cleaved oligosaccharide. They are part of a group called branching enzymes which catalyze the formation of alpha-1,6 branch points in either glycogen or starch. This group includes proteins from bacteria, eukaryotes, and archaea. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 402 |
| >gnl|CDD|200461 cd11322, AmyAc_Glg_BE, Alpha amylase catalytic domain found in the Glycogen branching enzyme (also called 1,4-alpha-glucan branching enzyme) | Back alignment and domain information |
|---|
Score = 40.6 bits (96), Expect = 0.004
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 598 FGTPEQLKYLVDECHKAGL 616
+GTP+ KY VD CH+AG+
Sbjct: 104 YGTPDDFKYFVDACHQAGI 122
|
The glycogen branching enzyme catalyzes the third step of glycogen biosynthesis by the cleavage of an alpha-(1,4)-glucosidic linkage and the formation a new alpha-(1,6)-branch by subsequent transfer of cleaved oligosaccharide. They are part of a group called branching enzymes which catalyze the formation of alpha-1,6 branch points in either glycogen or starch. This group includes proteins from bacteria, eukaryotes, and archaea. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 402 |
| >gnl|CDD|200461 cd11322, AmyAc_Glg_BE, Alpha amylase catalytic domain found in the Glycogen branching enzyme (also called 1,4-alpha-glucan branching enzyme) | Back alignment and domain information |
|---|
Score = 40.6 bits (96), Expect = 0.004
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 617 FGTPEQLKYLVDECHKAGL 635
+GTP+ KY VD CH+AG+
Sbjct: 104 YGTPDDFKYFVDACHQAGI 122
|
The glycogen branching enzyme catalyzes the third step of glycogen biosynthesis by the cleavage of an alpha-(1,4)-glucosidic linkage and the formation a new alpha-(1,6)-branch by subsequent transfer of cleaved oligosaccharide. They are part of a group called branching enzymes which catalyze the formation of alpha-1,6 branch points in either glycogen or starch. This group includes proteins from bacteria, eukaryotes, and archaea. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 402 |
| >gnl|CDD|200461 cd11322, AmyAc_Glg_BE, Alpha amylase catalytic domain found in the Glycogen branching enzyme (also called 1,4-alpha-glucan branching enzyme) | Back alignment and domain information |
|---|
Score = 40.6 bits (96), Expect = 0.004
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 636 FGTPEQLKYLVDECHKAGL 654
+GTP+ KY VD CH+AG+
Sbjct: 104 YGTPDDFKYFVDACHQAGI 122
|
The glycogen branching enzyme catalyzes the third step of glycogen biosynthesis by the cleavage of an alpha-(1,4)-glucosidic linkage and the formation a new alpha-(1,6)-branch by subsequent transfer of cleaved oligosaccharide. They are part of a group called branching enzymes which catalyze the formation of alpha-1,6 branch points in either glycogen or starch. This group includes proteins from bacteria, eukaryotes, and archaea. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 402 |
| >gnl|CDD|200461 cd11322, AmyAc_Glg_BE, Alpha amylase catalytic domain found in the Glycogen branching enzyme (also called 1,4-alpha-glucan branching enzyme) | Back alignment and domain information |
|---|
Score = 40.6 bits (96), Expect = 0.004
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 655 FGTPEQLKYLVDECHKAGL 673
+GTP+ KY VD CH+AG+
Sbjct: 104 YGTPDDFKYFVDACHQAGI 122
|
The glycogen branching enzyme catalyzes the third step of glycogen biosynthesis by the cleavage of an alpha-(1,4)-glucosidic linkage and the formation a new alpha-(1,6)-branch by subsequent transfer of cleaved oligosaccharide. They are part of a group called branching enzymes which catalyze the formation of alpha-1,6 branch points in either glycogen or starch. This group includes proteins from bacteria, eukaryotes, and archaea. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 402 |
| >gnl|CDD|200461 cd11322, AmyAc_Glg_BE, Alpha amylase catalytic domain found in the Glycogen branching enzyme (also called 1,4-alpha-glucan branching enzyme) | Back alignment and domain information |
|---|
Score = 40.6 bits (96), Expect = 0.004
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 674 FGTPEQLKYLVDECHKAGL 692
+GTP+ KY VD CH+AG+
Sbjct: 104 YGTPDDFKYFVDACHQAGI 122
|
The glycogen branching enzyme catalyzes the third step of glycogen biosynthesis by the cleavage of an alpha-(1,4)-glucosidic linkage and the formation a new alpha-(1,6)-branch by subsequent transfer of cleaved oligosaccharide. They are part of a group called branching enzymes which catalyze the formation of alpha-1,6 branch points in either glycogen or starch. This group includes proteins from bacteria, eukaryotes, and archaea. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 402 |
| >gnl|CDD|200461 cd11322, AmyAc_Glg_BE, Alpha amylase catalytic domain found in the Glycogen branching enzyme (also called 1,4-alpha-glucan branching enzyme) | Back alignment and domain information |
|---|
Score = 40.6 bits (96), Expect = 0.004
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 693 FGTPEQLKYLVDECHKAGL 711
+GTP+ KY VD CH+AG+
Sbjct: 104 YGTPDDFKYFVDACHQAGI 122
|
The glycogen branching enzyme catalyzes the third step of glycogen biosynthesis by the cleavage of an alpha-(1,4)-glucosidic linkage and the formation a new alpha-(1,6)-branch by subsequent transfer of cleaved oligosaccharide. They are part of a group called branching enzymes which catalyze the formation of alpha-1,6 branch points in either glycogen or starch. This group includes proteins from bacteria, eukaryotes, and archaea. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 402 |
| >gnl|CDD|200461 cd11322, AmyAc_Glg_BE, Alpha amylase catalytic domain found in the Glycogen branching enzyme (also called 1,4-alpha-glucan branching enzyme) | Back alignment and domain information |
|---|
Score = 40.6 bits (96), Expect = 0.004
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 712 FGTPEQLKYLVDECHKAGL 730
+GTP+ KY VD CH+AG+
Sbjct: 104 YGTPDDFKYFVDACHQAGI 122
|
The glycogen branching enzyme catalyzes the third step of glycogen biosynthesis by the cleavage of an alpha-(1,4)-glucosidic linkage and the formation a new alpha-(1,6)-branch by subsequent transfer of cleaved oligosaccharide. They are part of a group called branching enzymes which catalyze the formation of alpha-1,6 branch points in either glycogen or starch. This group includes proteins from bacteria, eukaryotes, and archaea. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 402 |
| >gnl|CDD|200461 cd11322, AmyAc_Glg_BE, Alpha amylase catalytic domain found in the Glycogen branching enzyme (also called 1,4-alpha-glucan branching enzyme) | Back alignment and domain information |
|---|
Score = 40.6 bits (96), Expect = 0.004
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 731 FGTPEQLKYLVDECHKAGL 749
+GTP+ KY VD CH+AG+
Sbjct: 104 YGTPDDFKYFVDACHQAGI 122
|
The glycogen branching enzyme catalyzes the third step of glycogen biosynthesis by the cleavage of an alpha-(1,4)-glucosidic linkage and the formation a new alpha-(1,6)-branch by subsequent transfer of cleaved oligosaccharide. They are part of a group called branching enzymes which catalyze the formation of alpha-1,6 branch points in either glycogen or starch. This group includes proteins from bacteria, eukaryotes, and archaea. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 402 |
| >gnl|CDD|200461 cd11322, AmyAc_Glg_BE, Alpha amylase catalytic domain found in the Glycogen branching enzyme (also called 1,4-alpha-glucan branching enzyme) | Back alignment and domain information |
|---|
Score = 40.6 bits (96), Expect = 0.004
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 750 FGTPEQLKYLVDECHKAGL 768
+GTP+ KY VD CH+AG+
Sbjct: 104 YGTPDDFKYFVDACHQAGI 122
|
The glycogen branching enzyme catalyzes the third step of glycogen biosynthesis by the cleavage of an alpha-(1,4)-glucosidic linkage and the formation a new alpha-(1,6)-branch by subsequent transfer of cleaved oligosaccharide. They are part of a group called branching enzymes which catalyze the formation of alpha-1,6 branch points in either glycogen or starch. This group includes proteins from bacteria, eukaryotes, and archaea. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 402 |
| >gnl|CDD|200461 cd11322, AmyAc_Glg_BE, Alpha amylase catalytic domain found in the Glycogen branching enzyme (also called 1,4-alpha-glucan branching enzyme) | Back alignment and domain information |
|---|
Score = 40.6 bits (96), Expect = 0.004
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 769 FGTPEQLKYLVDECHKAGL 787
+GTP+ KY VD CH+AG+
Sbjct: 104 YGTPDDFKYFVDACHQAGI 122
|
The glycogen branching enzyme catalyzes the third step of glycogen biosynthesis by the cleavage of an alpha-(1,4)-glucosidic linkage and the formation a new alpha-(1,6)-branch by subsequent transfer of cleaved oligosaccharide. They are part of a group called branching enzymes which catalyze the formation of alpha-1,6 branch points in either glycogen or starch. This group includes proteins from bacteria, eukaryotes, and archaea. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 402 |
| >gnl|CDD|223373 COG0296, GlgB, 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 0.004
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 123 FGTPEQLKYLVDECHKAGL 141
+GTPE K LVD H+AG+
Sbjct: 210 YGTPEDFKALVDAAHQAGI 228
|
Length = 628 |
| >gnl|CDD|223373 COG0296, GlgB, 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 0.004
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 142 FGTPEQLKYLVDECHKAGL 160
+GTPE K LVD H+AG+
Sbjct: 210 YGTPEDFKALVDAAHQAGI 228
|
Length = 628 |
| >gnl|CDD|223373 COG0296, GlgB, 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 0.004
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 161 FGTPEQLKYLVDECHKAGL 179
+GTPE K LVD H+AG+
Sbjct: 210 YGTPEDFKALVDAAHQAGI 228
|
Length = 628 |
| >gnl|CDD|223373 COG0296, GlgB, 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 0.004
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 180 FGTPEQLKYLVDECHKAGL 198
+GTPE K LVD H+AG+
Sbjct: 210 YGTPEDFKALVDAAHQAGI 228
|
Length = 628 |
| >gnl|CDD|223373 COG0296, GlgB, 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 0.004
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 199 FGTPEQLKYLVDECHKAGL 217
+GTPE K LVD H+AG+
Sbjct: 210 YGTPEDFKALVDAAHQAGI 228
|
Length = 628 |
| >gnl|CDD|223373 COG0296, GlgB, 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 0.004
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 218 FGTPEQLKYLVDECHKAGL 236
+GTPE K LVD H+AG+
Sbjct: 210 YGTPEDFKALVDAAHQAGI 228
|
Length = 628 |
| >gnl|CDD|223373 COG0296, GlgB, 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 0.004
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 237 FGTPEQLKYLVDECHKAGL 255
+GTPE K LVD H+AG+
Sbjct: 210 YGTPEDFKALVDAAHQAGI 228
|
Length = 628 |
| >gnl|CDD|223373 COG0296, GlgB, 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 0.004
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 256 FGTPEQLKYLVDECHKAGL 274
+GTPE K LVD H+AG+
Sbjct: 210 YGTPEDFKALVDAAHQAGI 228
|
Length = 628 |
| >gnl|CDD|223373 COG0296, GlgB, 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 0.004
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 275 FGTPEQLKYLVDECHKAGL 293
+GTPE K LVD H+AG+
Sbjct: 210 YGTPEDFKALVDAAHQAGI 228
|
Length = 628 |
| >gnl|CDD|223373 COG0296, GlgB, 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 0.004
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 294 FGTPEQLKYLVDECHKAGL 312
+GTPE K LVD H+AG+
Sbjct: 210 YGTPEDFKALVDAAHQAGI 228
|
Length = 628 |
| >gnl|CDD|223373 COG0296, GlgB, 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 0.004
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 313 FGTPEQLKYLVDECHKAGL 331
+GTPE K LVD H+AG+
Sbjct: 210 YGTPEDFKALVDAAHQAGI 228
|
Length = 628 |
| >gnl|CDD|223373 COG0296, GlgB, 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 0.004
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 332 FGTPEQLKYLVDECHKAGL 350
+GTPE K LVD H+AG+
Sbjct: 210 YGTPEDFKALVDAAHQAGI 228
|
Length = 628 |
| >gnl|CDD|223373 COG0296, GlgB, 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 0.004
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 351 FGTPEQLKYLVDECHKAGL 369
+GTPE K LVD H+AG+
Sbjct: 210 YGTPEDFKALVDAAHQAGI 228
|
Length = 628 |
| >gnl|CDD|223373 COG0296, GlgB, 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 0.004
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 370 FGTPEQLKYLVDECHKAGL 388
+GTPE K LVD H+AG+
Sbjct: 210 YGTPEDFKALVDAAHQAGI 228
|
Length = 628 |
| >gnl|CDD|223373 COG0296, GlgB, 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 0.004
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 389 FGTPEQLKYLVDECHKAGL 407
+GTPE K LVD H+AG+
Sbjct: 210 YGTPEDFKALVDAAHQAGI 228
|
Length = 628 |
| >gnl|CDD|223373 COG0296, GlgB, 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 0.004
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 408 FGTPEQLKYLVDECHKAGL 426
+GTPE K LVD H+AG+
Sbjct: 210 YGTPEDFKALVDAAHQAGI 228
|
Length = 628 |
| >gnl|CDD|223373 COG0296, GlgB, 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 0.004
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 427 FGTPEQLKYLVDECHKAGL 445
+GTPE K LVD H+AG+
Sbjct: 210 YGTPEDFKALVDAAHQAGI 228
|
Length = 628 |
| >gnl|CDD|223373 COG0296, GlgB, 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 0.004
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 446 FGTPEQLKYLVDECHKAGL 464
+GTPE K LVD H+AG+
Sbjct: 210 YGTPEDFKALVDAAHQAGI 228
|
Length = 628 |
| >gnl|CDD|223373 COG0296, GlgB, 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 0.004
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 465 FGTPEQLKYLVDECHKAGL 483
+GTPE K LVD H+AG+
Sbjct: 210 YGTPEDFKALVDAAHQAGI 228
|
Length = 628 |
| >gnl|CDD|223373 COG0296, GlgB, 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 0.004
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 484 FGTPEQLKYLVDECHKAGL 502
+GTPE K LVD H+AG+
Sbjct: 210 YGTPEDFKALVDAAHQAGI 228
|
Length = 628 |
| >gnl|CDD|223373 COG0296, GlgB, 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 0.004
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 503 FGTPEQLKYLVDECHKAGL 521
+GTPE K LVD H+AG+
Sbjct: 210 YGTPEDFKALVDAAHQAGI 228
|
Length = 628 |
| >gnl|CDD|223373 COG0296, GlgB, 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 0.004
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 522 FGTPEQLKYLVDECHKAGL 540
+GTPE K LVD H+AG+
Sbjct: 210 YGTPEDFKALVDAAHQAGI 228
|
Length = 628 |
| >gnl|CDD|223373 COG0296, GlgB, 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 0.004
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 541 FGTPEQLKYLVDECHKAGL 559
+GTPE K LVD H+AG+
Sbjct: 210 YGTPEDFKALVDAAHQAGI 228
|
Length = 628 |
| >gnl|CDD|223373 COG0296, GlgB, 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 0.004
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 560 FGTPEQLKYLVDECHKAGL 578
+GTPE K LVD H+AG+
Sbjct: 210 YGTPEDFKALVDAAHQAGI 228
|
Length = 628 |
| >gnl|CDD|223373 COG0296, GlgB, 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 0.004
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 579 FGTPEQLKYLVDECHKAGL 597
+GTPE K LVD H+AG+
Sbjct: 210 YGTPEDFKALVDAAHQAGI 228
|
Length = 628 |
| >gnl|CDD|223373 COG0296, GlgB, 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 0.004
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 598 FGTPEQLKYLVDECHKAGL 616
+GTPE K LVD H+AG+
Sbjct: 210 YGTPEDFKALVDAAHQAGI 228
|
Length = 628 |
| >gnl|CDD|223373 COG0296, GlgB, 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 0.004
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 617 FGTPEQLKYLVDECHKAGL 635
+GTPE K LVD H+AG+
Sbjct: 210 YGTPEDFKALVDAAHQAGI 228
|
Length = 628 |
| >gnl|CDD|223373 COG0296, GlgB, 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 0.004
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 636 FGTPEQLKYLVDECHKAGL 654
+GTPE K LVD H+AG+
Sbjct: 210 YGTPEDFKALVDAAHQAGI 228
|
Length = 628 |
| >gnl|CDD|223373 COG0296, GlgB, 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 0.004
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 655 FGTPEQLKYLVDECHKAGL 673
+GTPE K LVD H+AG+
Sbjct: 210 YGTPEDFKALVDAAHQAGI 228
|
Length = 628 |
| >gnl|CDD|223373 COG0296, GlgB, 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 0.004
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 674 FGTPEQLKYLVDECHKAGL 692
+GTPE K LVD H+AG+
Sbjct: 210 YGTPEDFKALVDAAHQAGI 228
|
Length = 628 |
| >gnl|CDD|223373 COG0296, GlgB, 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 0.004
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 693 FGTPEQLKYLVDECHKAGL 711
+GTPE K LVD H+AG+
Sbjct: 210 YGTPEDFKALVDAAHQAGI 228
|
Length = 628 |
| >gnl|CDD|223373 COG0296, GlgB, 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 0.004
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 712 FGTPEQLKYLVDECHKAGL 730
+GTPE K LVD H+AG+
Sbjct: 210 YGTPEDFKALVDAAHQAGI 228
|
Length = 628 |
| >gnl|CDD|223373 COG0296, GlgB, 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 0.004
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 731 FGTPEQLKYLVDECHKAGL 749
+GTPE K LVD H+AG+
Sbjct: 210 YGTPEDFKALVDAAHQAGI 228
|
Length = 628 |
| >gnl|CDD|223373 COG0296, GlgB, 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 0.004
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 750 FGTPEQLKYLVDECHKAGL 768
+GTPE K LVD H+AG+
Sbjct: 210 YGTPEDFKALVDAAHQAGI 228
|
Length = 628 |
| >gnl|CDD|200464 cd11325, AmyAc_GTHase, Alpha amylase catalytic domain found in Glycosyltrehalose trehalohydrolase (also called Maltooligosyl trehalose Trehalohydrolase) | Back alignment and domain information |
|---|
Score = 41.0 bits (97), Expect = 0.004
Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Query: 769 FGTPEQLKYLVDECHKAGLLCFMHVVC--AAGDFN 801
+G P+ LK LVD H+ GL + VV D N
Sbjct: 100 YGGPDDLKRLVDAAHRRGLAVILDVVYNHFGPDGN 134
|
Glycosyltrehalose trehalohydrolase (GTHase) was discovered as part of a coupled system for the production of trehalose from soluble starch. In the first half of the reaction, glycosyltrehalose synthase (GTSase), an intramolecular glycosyl transferase, converts the glycosidic bond between the last two glucose residues of amylose from an alpha-1,4 bond to an alpha-1,1 bond, making a non-reducing glycosyl trehaloside. In the second half of the reaction, GTHase cleaves the alpha-1,4 glycosidic bond adjacent to the trehalose moiety to release trehalose and malto-oligosaccharide. Like isoamylase and other glycosidases that recognize branched oligosaccharides, GTHase contains an N-terminal extension and does not have the conserved calcium ion present in other alpha amylase family enzymes. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Glycosyltrehalose Trehalohydrolase Maltooligosyltrehalose Trehalohydrolase. Length = 436 |
| >gnl|CDD|200479 cd11340, AmyAc_bac_CMD_like_3, Alpha amylase catalytic domain found in bacterial cyclomaltodextrinases and related proteins | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 0.004
Identities = 11/29 (37%), Positives = 19/29 (65%)
Query: 1033 FGTPEQLKYLVDECHKAGLYVLLDVVHSH 1061
FG+ E K LV + H G+ +++D+V +H
Sbjct: 92 FGSNEDYKELVSKAHARGMKLIMDMVPNH 120
|
Cyclomaltodextrinase (CDase; EC3.2.1.54), neopullulanase (NPase; EC 3.2.1.135), and maltogenic amylase (MA; EC 3.2.1.133) catalyze the hydrolysis of alpha-(1,4) glycosidic linkages on a number of substrates including cyclomaltodextrins (CDs), pullulan, and starch. These enzymes hydrolyze CDs and starch to maltose and pullulan to panose by cleavage of alpha-1,4 glycosidic bonds whereas alpha-amylases essentially lack activity on CDs and pullulan. They also catalyze transglycosylation of oligosaccharides to the C3-, C4- or C6-hydroxyl groups of various acceptor sugar molecules. Since these proteins are nearly indistinguishable from each other, they are referred to as cyclomaltodextrinases (CMDs). This group of CMDs is bacterial. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 407 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1276 | |||
| PLN02447 | 758 | 1,4-alpha-glucan-branching enzyme | 100.0 | |
| PRK12568 | 730 | glycogen branching enzyme; Provisional | 100.0 | |
| PRK14706 | 639 | glycogen branching enzyme; Provisional | 100.0 | |
| PRK14705 | 1224 | glycogen branching enzyme; Provisional | 100.0 | |
| PLN02960 | 897 | alpha-amylase | 100.0 | |
| KOG0470|consensus | 757 | 100.0 | ||
| TIGR01515 | 613 | branching_enzym alpha-1,4-glucan:alpha-1,4-glucan | 100.0 | |
| PRK12313 | 633 | glycogen branching enzyme; Provisional | 100.0 | |
| PRK05402 | 726 | glycogen branching enzyme; Provisional | 100.0 | |
| PLN03244 | 872 | alpha-amylase; Provisional | 100.0 | |
| COG0296 | 628 | GlgB 1,4-alpha-glucan branching enzyme [Carbohydra | 100.0 | |
| TIGR02103 | 898 | pullul_strch alpha-1,6-glucosidases, pullulanase-t | 100.0 | |
| TIGR02104 | 605 | pulA_typeI pullulanase, type I. Pullulan is an unu | 100.0 | |
| PLN02877 | 970 | alpha-amylase/limit dextrinase | 100.0 | |
| TIGR02102 | 1111 | pullulan_Gpos pullulanase, extracellular, Gram-pos | 100.0 | |
| PRK03705 | 658 | glycogen debranching enzyme; Provisional | 100.0 | |
| TIGR02100 | 688 | glgX_debranch glycogen debranching enzyme GlgX. Th | 100.0 | |
| TIGR02402 | 542 | trehalose_TreZ malto-oligosyltrehalose trehalohydr | 100.0 | |
| COG1523 | 697 | PulA Type II secretory pathway, pullulanase PulA a | 100.0 | |
| PRK14510 | 1221 | putative bifunctional 4-alpha-glucanotransferase/g | 100.0 | |
| PRK10785 | 598 | maltodextrin glucosidase; Provisional | 100.0 | |
| PLN02447 | 758 | 1,4-alpha-glucan-branching enzyme | 100.0 | |
| TIGR02403 | 543 | trehalose_treC alpha,alpha-phosphotrehalase. Treha | 100.0 | |
| TIGR02456 | 539 | treS_nterm trehalose synthase. Trehalose synthase | 100.0 | |
| PRK10933 | 551 | trehalose-6-phosphate hydrolase; Provisional | 100.0 | |
| PRK09505 | 683 | malS alpha-amylase; Reviewed | 99.97 | |
| PF00128 | 316 | Alpha-amylase: Alpha amylase, catalytic domain; In | 99.97 | |
| PRK09441 | 479 | cytoplasmic alpha-amylase; Reviewed | 99.96 | |
| COG0296 | 628 | GlgB 1,4-alpha-glucan branching enzyme [Carbohydra | 99.96 | |
| PLN00196 | 428 | alpha-amylase; Provisional | 99.93 | |
| PRK14705 | 1224 | glycogen branching enzyme; Provisional | 99.93 | |
| PRK12568 | 730 | glycogen branching enzyme; Provisional | 99.93 | |
| PLN02361 | 401 | alpha-amylase | 99.92 | |
| PRK14706 | 639 | glycogen branching enzyme; Provisional | 99.9 | |
| PLN02960 | 897 | alpha-amylase | 99.9 | |
| COG0366 | 505 | AmyA Glycosidases [Carbohydrate transport and meta | 99.9 | |
| PLN02784 | 894 | alpha-amylase | 99.89 | |
| PRK13840 | 495 | sucrose phosphorylase; Provisional | 99.86 | |
| PRK05402 | 726 | glycogen branching enzyme; Provisional | 99.86 | |
| PRK12313 | 633 | glycogen branching enzyme; Provisional | 99.85 | |
| TIGR01515 | 613 | branching_enzym alpha-1,4-glucan:alpha-1,4-glucan | 99.84 | |
| TIGR02455 | 688 | TreS_stutzeri trehalose synthase, Pseudomonas stut | 99.83 | |
| TIGR03852 | 470 | sucrose_gtfA sucrose phosphorylase. In the forward | 99.83 | |
| KOG0471|consensus | 545 | 99.82 | ||
| PF14872 | 811 | GHL5: Hypothetical glycoside hydrolase 5 | 99.8 | |
| KOG0470|consensus | 757 | 99.79 | ||
| TIGR02401 | 825 | trehalose_TreY malto-oligosyltrehalose synthase. T | 99.76 | |
| cd02854 | 99 | Glycogen_branching_enzyme_like_N_term Glycogen bra | 99.68 | |
| smart00642 | 166 | Aamy Alpha-amylase domain. | 99.64 | |
| PLN03244 | 872 | alpha-amylase; Provisional | 99.63 | |
| PHA02876 | 682 | ankyrin repeat protein; Provisional | 99.62 | |
| PHA02876 | 682 | ankyrin repeat protein; Provisional | 99.6 | |
| PHA02946 | 446 | ankyin-like protein; Provisional | 99.52 | |
| PHA02917 | 661 | ankyrin-like protein; Provisional | 99.51 | |
| PRK14511 | 879 | maltooligosyl trehalose synthase; Provisional | 99.5 | |
| PHA02946 | 446 | ankyin-like protein; Provisional | 99.49 | |
| PHA02874 | 434 | ankyrin repeat protein; Provisional | 99.49 | |
| PHA02917 | 661 | ankyrin-like protein; Provisional | 99.48 | |
| TIGR02104 | 605 | pulA_typeI pullulanase, type I. Pullulan is an unu | 99.47 | |
| cd02860 | 100 | Pullulanase_N_term Pullulanase domain N-terminus. | 99.47 | |
| PHA03100 | 480 | ankyrin repeat protein; Provisional | 99.47 | |
| TIGR02402 | 542 | trehalose_TreZ malto-oligosyltrehalose trehalohydr | 99.47 | |
| PHA02730 | 672 | ankyrin-like protein; Provisional | 99.46 | |
| PHA03100 | 480 | ankyrin repeat protein; Provisional | 99.46 | |
| PRK14507 | 1693 | putative bifunctional 4-alpha-glucanotransferase/m | 99.44 | |
| PF02922 | 85 | CBM_48: Carbohydrate-binding module 48 (Isoamylase | 99.41 | |
| PHA02875 | 413 | ankyrin repeat protein; Provisional | 99.41 | |
| PHA02874 | 434 | ankyrin repeat protein; Provisional | 99.38 | |
| PHA02730 | 672 | ankyrin-like protein; Provisional | 99.35 | |
| PHA02716 | 764 | CPXV016; CPX019; EVM010; Provisional | 99.35 | |
| PHA02875 | 413 | ankyrin repeat protein; Provisional | 99.33 | |
| PHA02878 | 477 | ankyrin repeat protein; Provisional | 99.33 | |
| PRK03705 | 658 | glycogen debranching enzyme; Provisional | 99.32 | |
| PHA02791 | 284 | ankyrin-like protein; Provisional | 99.31 | |
| PHA02716 | 764 | CPXV016; CPX019; EVM010; Provisional | 99.3 | |
| cd02856 | 103 | Glycogen_debranching_enzyme_N_term Glycogen_debran | 99.3 | |
| PHA02791 | 284 | ankyrin-like protein; Provisional | 99.3 | |
| KOG4177|consensus | 1143 | 99.3 | ||
| cd02854 | 99 | Glycogen_branching_enzyme_like_N_term Glycogen bra | 99.29 | |
| PHA02878 | 477 | ankyrin repeat protein; Provisional | 99.28 | |
| TIGR02100 | 688 | glgX_debranch glycogen debranching enzyme GlgX. Th | 99.28 | |
| TIGR02103 | 898 | pullul_strch alpha-1,6-glucosidases, pullulanase-t | 99.26 | |
| PHA02989 | 494 | ankyrin repeat protein; Provisional | 99.26 | |
| PHA03095 | 471 | ankyrin-like protein; Provisional | 99.25 | |
| KOG4177|consensus | 1143 | 99.25 | ||
| cd02852 | 119 | Isoamylase_N_term Isoamylase N-terminus domain. Is | 99.25 | |
| PHA03095 | 471 | ankyrin-like protein; Provisional | 99.24 | |
| TIGR02102 | 1111 | pullulan_Gpos pullulanase, extracellular, Gram-pos | 99.23 | |
| PHA02989 | 494 | ankyrin repeat protein; Provisional | 99.18 | |
| cd02855 | 106 | Glycogen_branching_enzyme_N_term Glycogen branchin | 99.16 | |
| PRK14510 | 1221 | putative bifunctional 4-alpha-glucanotransferase/g | 99.15 | |
| cd02855 | 106 | Glycogen_branching_enzyme_N_term Glycogen branchin | 99.14 | |
| PHA02798 | 489 | ankyrin-like protein; Provisional | 99.12 | |
| KOG2212|consensus | 504 | 99.12 | ||
| PF02922 | 85 | CBM_48: Carbohydrate-binding module 48 (Isoamylase | 99.09 | |
| KOG4412|consensus | 226 | 99.01 | ||
| PHA02798 | 489 | ankyrin-like protein; Provisional | 99.01 | |
| COG3280 | 889 | TreY Maltooligosyl trehalose synthase [Carbohydrat | 99.0 | |
| PLN02877 | 970 | alpha-amylase/limit dextrinase | 98.99 | |
| cd02853 | 85 | MTHase_N_term Maltooligosyl trehalose synthase (MT | 98.99 | |
| KOG0508|consensus | 615 | 98.97 | ||
| KOG0508|consensus | 615 | 98.93 | ||
| PHA02792 | 631 | ankyrin-like protein; Provisional | 98.93 | |
| cd02853 | 85 | MTHase_N_term Maltooligosyl trehalose synthase (MT | 98.89 | |
| TIGR01531 | 1464 | glyc_debranch glycogen debranching enzymye. glycog | 98.86 | |
| PHA02792 | 631 | ankyrin-like protein; Provisional | 98.85 | |
| cd02860 | 100 | Pullulanase_N_term Pullulanase domain N-terminus. | 98.84 | |
| cd02858 | 85 | Esterase_N_term Esterase N-terminal domain. Estera | 98.79 | |
| KOG4412|consensus | 226 | 98.76 | ||
| KOG0510|consensus | 929 | 98.75 | ||
| cd02861 | 82 | E_set_proteins_like E or "early" set-like proteins | 98.67 | |
| PHA02795 | 437 | ankyrin-like protein; Provisional | 98.63 | |
| cd02856 | 103 | Glycogen_debranching_enzyme_N_term Glycogen_debran | 98.58 | |
| KOG0510|consensus | 929 | 98.55 | ||
| cd02852 | 119 | Isoamylase_N_term Isoamylase N-terminus domain. Is | 98.54 | |
| cd02861 | 82 | E_set_proteins_like E or "early" set-like proteins | 98.5 | |
| cd02858 | 85 | Esterase_N_term Esterase N-terminal domain. Estera | 98.45 | |
| PHA02795 | 437 | ankyrin-like protein; Provisional | 98.43 | |
| PHA02859 | 209 | ankyrin repeat protein; Provisional | 98.37 | |
| PLN03192 | 823 | Voltage-dependent potassium channel; Provisional | 98.33 | |
| PHA02859 | 209 | ankyrin repeat protein; Provisional | 98.24 | |
| PLN03192 | 823 | Voltage-dependent potassium channel; Provisional | 98.22 | |
| PF02638 | 311 | DUF187: Glycosyl hydrolase like GH101; InterPro: I | 98.19 | |
| KOG0509|consensus | 600 | 98.16 | ||
| KOG0509|consensus | 600 | 97.94 | ||
| TIGR00870 | 743 | trp transient-receptor-potential calcium channel p | 97.94 | |
| cd02688 | 83 | E_set E or "early" set of sugar utilizing enzymes | 97.9 | |
| cd02688 | 83 | E_set E or "early" set of sugar utilizing enzymes | 97.88 | |
| TIGR00870 | 743 | trp transient-receptor-potential calcium channel p | 97.87 | |
| PF14871 | 132 | GHL6: Hypothetical glycosyl hydrolase 6 | 97.65 | |
| cd02859 | 79 | AMPKbeta_GBD_like AMP-activated protein kinase (AM | 97.62 | |
| PF14701 | 423 | hDGE_amylase: glucanotransferase domain of human g | 97.6 | |
| PHA02743 | 166 | Viral ankyrin protein; Provisional | 97.57 | |
| COG1523 | 697 | PulA Type II secretory pathway, pullulanase PulA a | 97.54 | |
| KOG4369|consensus | 2131 | 97.52 | ||
| KOG0507|consensus | 854 | 97.46 | ||
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 97.43 | |
| PF12796 | 89 | Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02 | 97.39 | |
| PHA02741 | 169 | hypothetical protein; Provisional | 97.39 | |
| COG1649 | 418 | Uncharacterized protein conserved in bacteria [Fun | 97.37 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 97.3 | |
| PF02324 | 809 | Glyco_hydro_70: Glycosyl hydrolase family 70; Inte | 97.29 | |
| PHA02743 | 166 | Viral ankyrin protein; Provisional | 97.23 | |
| KOG0507|consensus | 854 | 97.22 | ||
| PHA02736 | 154 | Viral ankyrin protein; Provisional | 97.22 | |
| PF12796 | 89 | Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02 | 97.21 | |
| PHA02741 | 169 | hypothetical protein; Provisional | 97.12 | |
| KOG0514|consensus | 452 | 97.1 | ||
| PLN03077 | 857 | Protein ECB2; Provisional | 97.05 | |
| PHA02884 | 300 | ankyrin repeat protein; Provisional | 96.86 | |
| PF13637 | 54 | Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A | 96.75 | |
| KOG0505|consensus | 527 | 96.72 | ||
| PLN03077 | 857 | Protein ECB2; Provisional | 96.68 | |
| PHA02884 | 300 | ankyrin repeat protein; Provisional | 96.66 | |
| cd00204 | 126 | ANK ankyrin repeats; ankyrin repeats mediate prote | 96.63 | |
| KOG0514|consensus | 452 | 96.53 | ||
| cd06597 | 340 | GH31_transferase_CtsY CtsY (cyclic tetrasaccharide | 96.42 | |
| PHA02736 | 154 | Viral ankyrin protein; Provisional | 96.28 | |
| PF02065 | 394 | Melibiase: Melibiase; InterPro: IPR000111 O-Glycos | 96.23 | |
| KOG0502|consensus | 296 | 96.18 | ||
| KOG4369|consensus | 2131 | 96.15 | ||
| cd06592 | 303 | GH31_glucosidase_KIAA1161 KIAA1161 is an uncharact | 96.1 | |
| cd06593 | 308 | GH31_xylosidase_YicI YicI alpha-xylosidase is a gl | 96.1 | |
| cd06594 | 317 | GH31_glucosidase_YihQ YihQ is a bacterial alpha-gl | 96.02 | |
| PF00128 | 316 | Alpha-amylase: Alpha amylase, catalytic domain; In | 96.01 | |
| smart00642 | 166 | Aamy Alpha-amylase domain. | 95.99 | |
| PF02806 | 95 | Alpha-amylase_C: Alpha amylase, C-terminal all-bet | 95.6 | |
| PF13199 | 559 | Glyco_hydro_66: Glycosyl hydrolase family 66; PDB: | 95.42 | |
| cd06602 | 339 | GH31_MGAM_SI_GAA This family includes the followin | 95.4 | |
| cd06600 | 317 | GH31_MGAM-like This family includes the following | 95.37 | |
| cd02859 | 79 | AMPKbeta_GBD_like AMP-activated protein kinase (AM | 95.35 | |
| cd00204 | 126 | ANK ankyrin repeats; ankyrin repeats mediate prote | 95.28 | |
| KOG0515|consensus | 752 | 95.28 | ||
| cd06591 | 319 | GH31_xylosidase_XylS XylS is a glycosyl hydrolase | 95.2 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 94.98 | |
| cd06599 | 317 | GH31_glycosidase_Aec37 Glycosyl hydrolase family 3 | 94.84 | |
| TIGR02403 | 543 | trehalose_treC alpha,alpha-phosphotrehalase. Treha | 94.67 | |
| PF13857 | 56 | Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A | 94.54 | |
| KOG0505|consensus | 527 | 94.53 | ||
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 94.41 | |
| PRK10933 | 551 | trehalose-6-phosphate hydrolase; Provisional | 94.07 | |
| PLN02361 | 401 | alpha-amylase | 94.01 | |
| KOG4214|consensus | 117 | 93.93 | ||
| KOG0512|consensus | 228 | 93.7 | ||
| KOG0195|consensus | 448 | 93.48 | ||
| PLN02784 | 894 | alpha-amylase | 93.39 | |
| TIGR02456 | 539 | treS_nterm trehalose synthase. Trehalose synthase | 93.38 | |
| PF13637 | 54 | Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A | 93.16 | |
| PRK09441 | 479 | cytoplasmic alpha-amylase; Reviewed | 93.09 | |
| PRK10785 | 598 | maltodextrin glucosidase; Provisional | 93.04 | |
| KOG4214|consensus | 117 | 93.0 | ||
| TIGR01370 | 315 | cysRS possible cysteinyl-tRNA synthetase, Methanoc | 92.99 | |
| PLN00196 | 428 | alpha-amylase; Provisional | 92.98 | |
| PF00150 | 281 | Cellulase: Cellulase (glycosyl hydrolase family 5) | 92.7 | |
| PRK10658 | 665 | putative alpha-glucosidase; Provisional | 92.39 | |
| PF13606 | 30 | Ank_3: Ankyrin repeat | 92.39 | |
| cd06604 | 339 | GH31_glucosidase_II_MalA Alpha-glucosidase II (alp | 92.3 | |
| PRK10426 | 635 | alpha-glucosidase; Provisional | 92.17 | |
| PTZ00322 | 664 | 6-phosphofructo-2-kinase/fructose-2,6-biphosphatas | 92.15 | |
| COG0666 | 235 | Arp FOG: Ankyrin repeat [General function predicti | 92.06 | |
| cd06598 | 317 | GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide | 92.01 | |
| PF01055 | 441 | Glyco_hydro_31: Glycosyl hydrolases family 31 ; In | 91.9 | |
| PRK09505 | 683 | malS alpha-amylase; Reviewed | 91.5 | |
| PTZ00322 | 664 | 6-phosphofructo-2-kinase/fructose-2,6-biphosphatas | 91.19 | |
| cd02875 | 358 | GH18_chitobiase Chitobiase (also known as di-N-ace | 91.09 | |
| cd06595 | 292 | GH31_xylosidase_XylS-like This family represents a | 90.64 | |
| PF00023 | 33 | Ank: Ankyrin repeat Hereditary spherocytosis; Inte | 90.5 | |
| COG0666 | 235 | Arp FOG: Ankyrin repeat [General function predicti | 90.43 | |
| PLN02635 | 538 | disproportionating enzyme | 90.28 | |
| COG1501 | 772 | Alpha-glucosidases, family 31 of glycosyl hydrolas | 90.17 | |
| KOG0506|consensus | 622 | 89.94 | ||
| PRK14508 | 497 | 4-alpha-glucanotransferase; Provisional | 89.67 | |
| PRK14582 | 671 | pgaB outer membrane N-deacetylase; Provisional | 89.63 | |
| KOG3625|consensus | 1521 | 89.47 | ||
| cd06603 | 339 | GH31_GANC_GANAB_alpha This family includes the clo | 89.17 | |
| KOG0502|consensus | 296 | 88.85 | ||
| PRK14511 | 879 | maltooligosyl trehalose synthase; Provisional | 88.33 | |
| KOG0515|consensus | 752 | 88.32 | ||
| PLN02763 | 978 | hydrolase, hydrolyzing O-glycosyl compounds | 88.16 | |
| TIGR02401 | 825 | trehalose_TreY malto-oligosyltrehalose synthase. T | 87.59 | |
| cd06542 | 255 | GH18_EndoS-like Endo-beta-N-acetylglucosaminidases | 87.44 | |
| cd06601 | 332 | GH31_lyase_GLase GLases (alpha-1,4-glucan lyases) | 87.09 | |
| PF13857 | 56 | Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A | 86.99 | |
| PF13200 | 316 | DUF4015: Putative glycosyl hydrolase domain | 85.22 | |
| cd06545 | 253 | GH18_3CO4_chitinase The Bacteroides thetaiotaomicr | 85.02 | |
| PF11941 | 89 | DUF3459: Domain of unknown function (DUF3459); Int | 84.87 | |
| PRK14507 | 1693 | putative bifunctional 4-alpha-glucanotransferase/m | 84.76 | |
| PF07745 | 332 | Glyco_hydro_53: Glycosyl hydrolase family 53; Inte | 84.45 | |
| PRK11052 | 695 | malQ 4-alpha-glucanotransferase; Provisional | 83.32 | |
| KOG0512|consensus | 228 | 82.62 | ||
| PF13606 | 30 | Ank_3: Ankyrin repeat | 82.08 | |
| PF02324 | 809 | Glyco_hydro_70: Glycosyl hydrolase family 70; Inte | 81.29 | |
| cd05808 | 95 | CBM20_alpha_amylase Alpha-amylase, C-terminal CBM2 | 80.76 |
| >PLN02447 1,4-alpha-glucan-branching enzyme | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-77 Score=728.96 Aligned_cols=448 Identities=49% Similarity=0.871 Sum_probs=402.2
Q ss_pred cccChhhhhhhHhhccccCCCCCcccCeeecCceEEEEEccCCcEEEEEccCCCCccccccceecCCCeEEEEcCCCCCC
Q psy9003 749 LFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLLCFMHVVCAAGDFNNWNREEFAYKKLDFGKWELVLPPNPDG 828 (1276)
Q Consensus 749 ~~~~~e~l~~F~~~Y~~~G~~Gtp~G~~y~~D~a~FalwAP~A~~VsLvGDFN~wd~~~~pM~r~~~GVWsl~Ip~~~~G 828 (1276)
+.....+|++|+.+|+++|++.++ +++.|++|||+|++|+|+||||+|++..++|++.+.|+|+++||+ .+|
T Consensus 90 i~~~~~~l~~f~~~y~~lGa~~~~-------~g~~FrvWAP~A~~V~LvGdFN~W~~~~~~M~~~~~GvWe~~ip~-~~g 161 (758)
T PLN02447 90 IEKNEGGLEAFSRGYEKFGFNRSE-------GGITYREWAPGAKAAALIGDFNNWNPNAHWMTKNEFGVWEIFLPD-ADG 161 (758)
T ss_pred HhhcCCCHHHHHHHHHhceeEEec-------CCEEEEEECCCCCEEEEEEecCCCCCCccCceeCCCCEEEEEECC-ccc
Confidence 334556799999999998887665 467899999999999999999999988899999889999999999 788
Q ss_pred CcccCcccEEEEEEEEeCCeeeeecCCcceEeecCCCC-CccccceeeCCCCCCCCCcCCCCCCCCCCceEEEEecCCcc
Q psy9003 829 SCKLTHLSQVKLVVRNQHGHLLDRLSPWATYVTEPPVV-GHAYEQRIWNPKPQDKHKWTSSKPKKPDNLKIYESHVGICT 907 (1276)
Q Consensus 829 ~~~i~hGs~YkYrV~~~dG~~~~~~DPYAkav~~~~~~-s~v~~~~~~~p~~~~~y~W~~~rp~~~~d~vIYElHVr~ft 907 (1276)
.+++++|+.|+|+|+..+|.+..++||||+++..++.. +.++++.+|+|+..+.|.|++.+|+.+.+++|||+||+.|+
T Consensus 162 ~~~~~~G~~Yky~i~~~~g~~~~r~dpya~~~~~~p~~~~~~~~svv~dp~~~~~y~w~~~~~~~~~~~~IYE~Hvg~~~ 241 (758)
T PLN02447 162 SPAIPHGSRVKIRMETPDGRWVDRIPAWIKYAVQAPGEIGAPYNGVYWDPPEEEKYVFKHPRPPRPAALRIYEAHVGMSS 241 (758)
T ss_pred cccCCCCCEEEEEEEeCCCcEEeecCchHheeeccCCccCCCCceEEeCCCCCCCCCCCCCCCCCCCCCEEEEEeCCccc
Confidence 88999999999999988898889999999998887642 45677889998755579999888777788999999999999
Q ss_pred ccCccCcHHHHHHhhhhHHHHcCCCCCccceeecccccccccccccceeeccCccccccccccccCCCcccCCCcccccc
Q psy9003 908 QEQKCASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAESHDQALVGDKTIAFW 987 (1276)
Q Consensus 908 ~~~~~Gtf~gl~ek~LdyLK~LGVna~d~wV~LmP~f~~eew~~~~pi~~l~~~Pi~E~~i~~~~S~~~~~WGYdp~nyf 987 (1276)
+++..|+|+++++++|||||+||||+ |||| |++++ +..+ +|||++.+||
T Consensus 242 ~~~~~gty~~~~~~~L~ylk~LG~t~----I~Lm--------------------Pi~e~--~~~~-----~wGY~~~~~f 290 (758)
T PLN02447 242 EEPKVNSYREFADDVLPRIKALGYNA----VQLM--------------------AIQEH--AYYG-----SFGYHVTNFF 290 (758)
T ss_pred CCCCCCCHHHHHHHHHHHHHHcCCCE----EEEC--------------------Ccccc--CCCC-----CCCcCcccCc
Confidence 88889999999988899999999999 9999 44444 3333 4999999999
Q ss_pred ccccccccccCCCCCCcccccccccccCCCCCccccccccccCCCCCCHHHHHHHHHHHHHcCCEEEEEEeccccCCccc
Q psy9003 988 LMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVL 1067 (1276)
Q Consensus 988 ~~d~~~y~~~S~~~Dp~~~~dap~~~yas~s~hkYt~D~~~ID~~~Gt~eEfK~LV~alHk~GI~VILDvV~NHt~~~~~ 1067 (1276)
+|+ ++||+++|||+||++||++||+||||+|+||++.+..
T Consensus 291 ---------------------a~~-------------------~~~Gtp~dlk~LVd~aH~~GI~VilDvV~nH~~~~~~ 330 (758)
T PLN02447 291 ---------------------AVS-------------------SRSGTPEDLKYLIDKAHSLGLRVLMDVVHSHASKNTL 330 (758)
T ss_pred ---------------------ccc-------------------cccCCHHHHHHHHHHHHHCCCEEEEEecccccccccc
Confidence 666 8899999999999999999999999999999998876
Q ss_pred CCCcCCCCCCCcccccCCCCCCCCCCCcCCCCCcHHHHHHHHHHHHHHHHhCCCcEEccCCccccccccCCCCCCCCCCC
Q psy9003 1068 DGLNEFDGTQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHY 1147 (1276)
Q Consensus 1068 ~~~~~f~g~~~~Yy~~~~~g~~~~W~g~~LN~~np~Vr~~Iidsl~~Wv~eygVDGFRfD~a~~L~~~d~g~g~~~~~~~ 1147 (1276)
.++..|++..+.||+.++.+.+..|+...+|+++++||+||+++++||++||||||||||++.+|.|.++|.+.+|++++
T Consensus 331 ~gl~~fDg~~~~Yf~~~~~g~~~~w~~~~~N~~~~eVr~fLl~~~~~Wl~ey~IDGfRfDaV~smlY~~hg~~~~f~~~~ 410 (758)
T PLN02447 331 DGLNGFDGTDGSYFHSGPRGYHWLWDSRLFNYGNWEVLRFLLSNLRWWLEEYKFDGFRFDGVTSMLYHHHGLQMAFTGNY 410 (758)
T ss_pred ccccccCCCCccccccCCCCCcCcCCCceecCCCHHHHHHHHHHHHHHHHHhCcccccccchhhhhccccCcccccccCc
Confidence 67788998887888877777778898889999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCchHHHHHHHHHHHHHhhCCCeEEEEEccCCCCCCccccccCCcccCcccC-CC------------------
Q psy9003 1148 DEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDYRLV-SL------------------ 1208 (1276)
Q Consensus 1148 ~~~~~~~~d~~a~~Fl~el~~~Vr~~~PdvilIAE~~s~~p~~~~p~~~gglGFD~~~n-~l------------------ 1208 (1276)
.++||.+.|.+++.||+++++.|++.+|++++|||+++++|.+|+|+..||+||||+|+ .+
T Consensus 411 ~~~~g~~~d~~a~~fL~~~N~~i~~~~p~~~~IAEd~s~~p~l~~p~~~GGlGFDykw~Mg~~~~~l~~l~~~~d~~~~~ 490 (758)
T PLN02447 411 NEYFGMATDVDAVVYLMLANDLLHGLYPEAVTIAEDVSGMPTLCRPVQEGGVGFDYRLAMAIPDKWIELLKEKRDEDWSM 490 (758)
T ss_pred ccccCCccChHHHHHHHHHHHHHHHhCCCeEEEEEcCCCCCCccccCCCCcCCcceEECCccchHHHHHHhhCCCcccCH
Confidence 99999999999999999999999999999999999999999999999999999999988 33
Q ss_pred -------------c------cc--------------------------------------h------h------------
Q psy9003 1209 -------------E------GS--------------------------------------A------L------------ 1213 (1276)
Q Consensus 1209 -------------E------es--------------------------------------a------L------------ 1213 (1276)
| +| + +
T Consensus 491 ~~l~~sl~~r~~~E~~I~y~eSHDevv~Gkksl~~~l~d~~my~~m~~~~~~~~~~~R~~~lhkmirl~~~~~pG~g~L~ 570 (758)
T PLN02447 491 GDIVHTLTNRRYTEKCVAYAESHDQALVGDKTIAFWLMDKEMYDGMSTLTPATPVVDRGIALHKMIRLITMALGGEGYLN 570 (758)
T ss_pred HHHHHHHhcccccCceEeccCCcCeeecCcchhHhhhcchhhhhcCCCChhhhhhHHHHHHHHHHHHHHHHhCCCCccee
Confidence 0 00 0 0
Q ss_pred ---------------------h---------------------HHHHHHHHHHHHHhcccCCCCCeeEeecCCCeEEEEE
Q psy9003 1214 ---------------------S---------------------ALFDAAMNTTEERFKWLSADPGYVSTKHEGDKVIIFE 1251 (1276)
Q Consensus 1214 ---------------------S---------------------~~F~~~Ln~l~~~~p~L~~~~~~~l~nHD~~RVlsf~ 1251 (1276)
| .+|+++||+++++.|+|.++..|+...|..++|++|+
T Consensus 571 FMGnEFg~~ew~Dfpr~~n~ws~~~~~~~W~L~d~~~l~~~~l~~f~~~L~~l~~~~~~L~~~~~~i~~~d~~~~Viaf~ 650 (758)
T PLN02447 571 FMGNEFGHPEWIDFPREGNGWSYDKCRRRWDLADADHLRYKFLNAFDRAMMHLDEKYGFLTSEHQYVSRKDEGDKVIVFE 650 (758)
T ss_pred ecccccCCchhccCcccccccCcccccCCccccCCCchhhhHHHHHHHHHHHHHhcCccccCCCceeeeecCCCCEEEEE
Confidence 0 4489999999999999998888999999999999999
Q ss_pred cCcEEEEEeCCCCCCccccccccC
Q psy9003 1252 RAGLLFAFNFNGTQSFTDYRGKSN 1275 (1276)
Q Consensus 1252 R~~ll~v~N~~~~~s~~~y~~~~~ 1275 (1276)
|++++|||||+|++|+++|+||||
T Consensus 651 R~~ll~V~NF~p~~s~~~Y~igvp 674 (758)
T PLN02447 651 RGDLVFVFNFHPTNSYSDYRVGCD 674 (758)
T ss_pred eCCeEEEEeCCCCCCCCCcEECCC
Confidence 999999999999999999999997
|
|
| >PRK12568 glycogen branching enzyme; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-66 Score=632.20 Aligned_cols=421 Identities=26% Similarity=0.453 Sum_probs=344.3
Q ss_pred hhccccCCCCCcccCeeecCceEEEEEccCCcEEEEEccCCCCccccccceecCCCeEEEEcCCCCCCCcccCcccEEEE
Q psy9003 761 DECHKAGLFGTPEQLKYLVDECHKAGLLCFMHVVCAAGDFNNWNREEFAYKKLDFGKWELVLPPNPDGSCKLTHLSQVKL 840 (1276)
Q Consensus 761 ~~Y~~~G~~Gtp~G~~y~~D~a~FalwAP~A~~VsLvGDFN~wd~~~~pM~r~~~GVWsl~Ip~~~~G~~~i~hGs~YkY 840 (1276)
..|+.+|++-...+ .+++++|+||||+|++|+|+||||+|++..+||.+...|+|+++||+...| ..|+|
T Consensus 122 ~~y~~lGah~~~~~---g~~Gv~FaVWAPnA~~VsVvGDFN~Wdg~~~pM~~~~~GVWelfipg~~~G-------~~YKY 191 (730)
T PRK12568 122 ALRRALGAQHVQVG---EVPGVRFAVWAPHAQRVAVVGDFNGWDVRRHPMRQRIGGFWELFLPRVEAG-------ARYKY 191 (730)
T ss_pred hhHHhcCCeEeeEC---CCCcEEEEEECCCCCEEEEEEecCCCCccceecccCCCCEEEEEECCCCCC-------CEEEE
Confidence 34777888765332 257899999999999999999999999999999888899999999988765 69999
Q ss_pred EEEEeCCeeeeecCCcceEeecCCCC-CccccceeeCCCCCCCCCcC-----CCCCC--CCCCceEEEEecCCccc--cC
Q psy9003 841 VVRNQHGHLLDRLSPWATYVTEPPVV-GHAYEQRIWNPKPQDKHKWT-----SSKPK--KPDNLKIYESHVGICTQ--EQ 910 (1276)
Q Consensus 841 rV~~~dG~~~~~~DPYAkav~~~~~~-s~v~~~~~~~p~~~~~y~W~-----~~rp~--~~~d~vIYElHVr~ft~--~~ 910 (1276)
+|...+|.+..++||||++++.++.. +++.+ +. .|+|. ..+++ .+++++|||+|+|+|+. .+
T Consensus 192 eI~~~~G~~~~k~DPYA~~~e~~p~~asvV~~-----~~---~~~W~d~~W~~~r~~~~~~~~~~IYEvHvgsf~~~~~~ 263 (730)
T PRK12568 192 AITAADGRVLLKADPVARQTELPPATASVVPS-----AA---AFAWTDAAWMARRDPAAVPAPLSIYEVHAASWRRDGHN 263 (730)
T ss_pred EEEcCCCeEeecCCCcceEeecCCCCCeEEcC-----CC---CCCCCChhhhhcccccCCCCCcEEEEEEhHHhcCCCCC
Confidence 99988899888999999999887643 33322 11 24454 33332 45799999999999986 34
Q ss_pred ccCcHHHHHHhhhhHHHHcCCCCCccceeecccccccccccccceeeccCccccccccccccCCCcccCCCccccccccc
Q psy9003 911 KCASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAESHDQALVGDKTIAFWLMD 990 (1276)
Q Consensus 911 ~~Gtf~gl~ek~LdyLK~LGVna~d~wV~LmP~f~~eew~~~~pi~~l~~~Pi~E~~i~~~~S~~~~~WGYdp~nyf~~d 990 (1276)
.+++|.++++++|||||+||||+ ||||| ++++ +.. .+|||+|.+||
T Consensus 264 ~~~~~~~la~~ll~ylk~LGvt~----I~LmP--------------------i~e~--~~~-----~~wGY~~~~~~--- 309 (730)
T PRK12568 264 QPLDWPTLAEQLIPYVQQLGFTH----IELLP--------------------ITEH--PFG-----GSWGYQPLGLY--- 309 (730)
T ss_pred CCCCHHHHHHHHHHHHHHcCCCE----EEECc--------------------cccC--CCC-----CCCCCCCCcCC---
Confidence 57899999998889999999999 99994 4443 322 35999999999
Q ss_pred cccccccCCCCCCcccccccccccCCCCCccccccccccCCCCCCHHHHHHHHHHHHHcCCEEEEEEeccccCCcccCCC
Q psy9003 991 KEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGL 1070 (1276)
Q Consensus 991 ~~~y~~~S~~~Dp~~~~dap~~~yas~s~hkYt~D~~~ID~~~Gt~eEfK~LV~alHk~GI~VILDvV~NHt~~~~~~~~ 1070 (1276)
+|+ ++||+++|||+||++||++||+||||+|+||++.+. .++
T Consensus 310 ------------------a~~-------------------~~~G~~~dfk~lV~~~H~~Gi~VIlD~V~nH~~~d~-~~l 351 (730)
T PRK12568 310 ------------------APT-------------------ARHGSPDGFAQFVDACHRAGIGVILDWVSAHFPDDA-HGL 351 (730)
T ss_pred ------------------ccC-------------------cccCCHHHHHHHHHHHHHCCCEEEEEeccccCCccc-ccc
Confidence 666 899999999999999999999999999999999863 355
Q ss_pred cCCCCCCCcccccC-CCCCCCCCCCcCCCCCcHHHHHHHHHHHHHHHHhCCCcEEccCCccccccccCCCCCC-CCCCCc
Q psy9003 1071 NEFDGTQACFFHDG-PRGTHPLWDSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEG-FSGHYD 1148 (1276)
Q Consensus 1071 ~~f~g~~~~Yy~~~-~~g~~~~W~g~~LN~~np~Vr~~Iidsl~~Wv~eygVDGFRfD~a~~L~~~d~g~g~~-~~~~~~ 1148 (1276)
..|++.. .|.+.+ ..+.+.+|++..||+.+|+||++|+++++||+++|||||||||++..|.+.++++.++ |. +
T Consensus 352 ~~fdg~~-~Ye~~d~~~g~~~~W~~~~~N~~~peVr~~li~~a~~Wl~eyhIDG~R~DAva~mly~d~~r~~g~w~---p 427 (730)
T PRK12568 352 AQFDGAA-LYEHADPREGMHRDWNTLIYNYGRPEVTAYLLGSALEWIEHYHLDGLRVDAVASMLYRDYGRAEGEWV---P 427 (730)
T ss_pred ccCCCcc-ccccCCCcCCccCCCCCeecccCCHHHHHHHHHHHHHHHHHhCceEEEEcCHhHhhhhcccccccccc---c
Confidence 6777753 333333 3466889988889999999999999999999999999999999999998888766543 43 2
Q ss_pred cccCCCCCchHHHHHHHHHHHHHhhCCCeEEEEEccCCCCCCccccccCCcccCcccC-CC-------------------
Q psy9003 1149 EYFGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDYRLV-SL------------------- 1208 (1276)
Q Consensus 1149 ~~~~~~~d~~a~~Fl~el~~~Vr~~~PdvilIAE~~s~~p~~~~p~~~gglGFD~~~n-~l------------------- 1208 (1276)
+.+|++.+.+++.||+++++.+++.+|++++|||+++.+|.+++|...||+|||++|| .+
T Consensus 428 n~~gg~en~ea~~Fl~~ln~~v~~~~P~~~~IAEest~~p~vt~p~~~gGlGFd~kwn~gwm~d~l~y~~~dp~~r~~~h 507 (730)
T PRK12568 428 NAHGGRENLEAVAFLRQLNREIASQFPGVLTIAEESTAWPGVTAPISDGGLGFTHKWNMGWMHDTLHYMQRDPAERAHHH 507 (730)
T ss_pred cccCCccChHHHHHHHHHHHHHHHHCCCeEEEEEcCCCCccccccccCCCCCcCcEeCChhHHHHHHHHhhCchhhhhhh
Confidence 4467788889999999999999999999999999999999999999999999999999 43
Q ss_pred ------------c---------c------c-----------------hh-------------------------h-----
Q psy9003 1209 ------------E---------G------S-----------------AL-------------------------S----- 1214 (1276)
Q Consensus 1209 ------------E---------e------s-----------------aL-------------------------S----- 1214 (1276)
| | + ++ +
T Consensus 508 ~~ltf~~~y~~~e~fvlp~SHDEvvhgk~sl~~kmpGd~~~k~a~lR~~~~~~~~~PGkkLlFmG~Efgq~~ew~~~~~l 587 (730)
T PRK12568 508 SQLTFGLVYAFSERFVLPLSHDEVVHGTGGLLGQMPGDDWRRFANLRAYLALMWAHPGDKLLFMGAEFGQWADWNHDQSL 587 (730)
T ss_pred hhhhhhhhhhhhccEeccCCCcccccCchhhhhcCCCCHHHHHHHHHHHHHHHHhCCCcceeeCchhhCCcccccCCCCc
Confidence 0 0 0 00 0
Q ss_pred -------------HHHHHHHHHHHHHhcccCCC------CCeeEeecCCCeEEEEEcC------c-EEEEEeCCCCCCcc
Q psy9003 1215 -------------ALFDAAMNTTEERFKWLSAD------PGYVSTKHEGDKVIIFERA------G-LLFAFNFNGTQSFT 1268 (1276)
Q Consensus 1215 -------------~~F~~~Ln~l~~~~p~L~~~------~~~~l~nHD~~RVlsf~R~------~-ll~v~N~~~~~s~~ 1268 (1276)
.+|.+.||+++++.|+|... ..|+..+.....|++|.|. + ++||+||+|. .++
T Consensus 588 dW~ll~~~~h~~~~~~~~dLn~ly~~~paL~~~d~~~~gf~wi~~~d~~~sv~af~R~~~~~~~~~v~vV~Nft~~-~~~ 666 (730)
T PRK12568 588 DWHLLDGARHRGMQQLVGDLNAALRRTPALYRGTHRADGFDWSVADDARNSVLAFIRHDPDGGGVPLLAVSNLTPQ-PHH 666 (730)
T ss_pred cccccCChhHHHHHHHHHHHHHHHHhChhhhcccCCCCCeEEEeCCCCCCcEEEEEEecCCCCCCeEEEEECCCCC-Ccc
Confidence 66999999999999998543 2355555556679999993 2 9999999998 799
Q ss_pred ccccccCC
Q psy9003 1269 DYRGKSNC 1276 (1276)
Q Consensus 1269 ~y~~~~~~ 1276 (1276)
+|+||+|+
T Consensus 667 ~Y~ig~p~ 674 (730)
T PRK12568 667 DYRVGVPR 674 (730)
T ss_pred CeEECCCC
Confidence 99999985
|
|
| >PRK14706 glycogen branching enzyme; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-65 Score=620.77 Aligned_cols=420 Identities=26% Similarity=0.441 Sum_probs=345.0
Q ss_pred hhccccCCCCCcccCeeecCceEEEEEccCCcEEEEEccCCCCccccccceecCCCeEEEEcCCCCCCCcccCcccEEEE
Q psy9003 761 DECHKAGLFGTPEQLKYLVDECHKAGLLCFMHVVCAAGDFNNWNREEFAYKKLDFGKWELVLPPNPDGSCKLTHLSQVKL 840 (1276)
Q Consensus 761 ~~Y~~~G~~Gtp~G~~y~~D~a~FalwAP~A~~VsLvGDFN~wd~~~~pM~r~~~GVWsl~Ip~~~~G~~~i~hGs~YkY 840 (1276)
..|+.+|++..+.+ .+++++|++|||+|++|+|+||||+|++..+||.+.+.|+|++++|+... |..|+|
T Consensus 22 ~~~~~lGah~~~~~---~~~Gv~FrvwAP~A~~V~Lvgdfn~w~~~~~pM~~~~~GvW~~~vpg~~~-------g~~Yky 91 (639)
T PRK14706 22 RPDHLLGAHPATEG---GVEGVRFAVWAPGAQHVSVVGDFNDWNGFDHPMQRLDFGFWGAFVPGARP-------GQRYKF 91 (639)
T ss_pred chhHhcCccCccCC---CcccEEEEEECCCCCEEEEEEecCCcccccccccccCCCEEEEEECCCCC-------CCEEEE
Confidence 34778888876553 24578999999999999999999999988899998888999999998755 469999
Q ss_pred EEEEeCCeeeeecCCcceEeecCCCCCccccceeeCCCCCCCCCcCCCC------CCCCCCceEEEEecCCccc--cCcc
Q psy9003 841 VVRNQHGHLLDRLSPWATYVTEPPVVGHAYEQRIWNPKPQDKHKWTSSK------PKKPDNLKIYESHVGICTQ--EQKC 912 (1276)
Q Consensus 841 rV~~~dG~~~~~~DPYAkav~~~~~~s~v~~~~~~~p~~~~~y~W~~~r------p~~~~d~vIYElHVr~ft~--~~~~ 912 (1276)
+|++.+|.++.++||||+++..++..+ +.++++ .|+|.+.. |+.+++++|||+|||+|+. ++..
T Consensus 92 ~I~~~~g~~~~~~DPYa~~~~~~~~~~----svv~~~----~~~w~d~~w~~~~~~~~~~~~~IYE~Hvg~f~~~~~g~~ 163 (639)
T PRK14706 92 RVTGAAGQTVDKMDPYGSFFEVRPNTA----SIIWED----RFEWTDTRWMSSRTAGFDQPISIYEVHVGSWARRDDGWF 163 (639)
T ss_pred EEECCCCCEEeccCcceEEEecCCCCc----eEECCC----CCCCCCcccccccCCccCCCcEEEEEehhhcccCCCCCc
Confidence 999878888899999999998765432 223333 36676542 2234579999999999985 3456
Q ss_pred CcHHHHHHhhhhHHHHcCCCCCccceeecccccccccccccceeeccCccccccccccccCCCcccCCCccccccccccc
Q psy9003 913 ASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAESHDQALVGDKTIAFWLMDKE 992 (1276)
Q Consensus 913 Gtf~gl~ek~LdyLK~LGVna~d~wV~LmP~f~~eew~~~~pi~~l~~~Pi~E~~i~~~~S~~~~~WGYdp~nyf~~d~~ 992 (1276)
|+|+++++++++|||+||||+ |||| |+.|+ +.. .+|||++.+||
T Consensus 164 ~ty~~~~~~l~~ylk~lG~t~----velm--------------------Pv~e~--~~~-----~~wGY~~~~~~----- 207 (639)
T PRK14706 164 LNYRELAHRLGEYVTYMGYTH----VELL--------------------GVMEH--PFD-----GSWGYQVTGYY----- 207 (639)
T ss_pred cCHHHHHHHHHHHHHHcCCCE----EEcc--------------------chhcC--CCC-----CCCCcCccccc-----
Confidence 899999998679999999999 9999 44444 333 35999999999
Q ss_pred cccccCCCCCCcccccccccccCCCCCccccccccccCCCCCCHHHHHHHHHHHHHcCCEEEEEEeccccCCcccCCCcC
Q psy9003 993 MYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNE 1072 (1276)
Q Consensus 993 ~y~~~S~~~Dp~~~~dap~~~yas~s~hkYt~D~~~ID~~~Gt~eEfK~LV~alHk~GI~VILDvV~NHt~~~~~~~~~~ 1072 (1276)
+|+ ++||+++|||+||++||++||+||||+|+||++.+. .++..
T Consensus 208 ----------------~~~-------------------~~~g~~~~~~~lv~~~H~~gi~VilD~v~nH~~~~~-~~l~~ 251 (639)
T PRK14706 208 ----------------APT-------------------SRLGTPEDFKYLVNHLHGLGIGVILDWVPGHFPTDE-SGLAH 251 (639)
T ss_pred ----------------ccc-------------------cccCCHHHHHHHHHHHHHCCCEEEEEecccccCcch-hhhhc
Confidence 666 889999999999999999999999999999999863 45566
Q ss_pred CCCCCCcccccCCCCCCCCCCCcCCCCCcHHHHHHHHHHHHHHHHhCCCcEEccCCccccccccCCCCCCCCCCCccccC
Q psy9003 1073 FDGTQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFG 1152 (1276)
Q Consensus 1073 f~g~~~~Yy~~~~~g~~~~W~g~~LN~~np~Vr~~Iidsl~~Wv~eygVDGFRfD~a~~L~~~d~g~g~~~~~~~~~~~~ 1152 (1276)
|+|..-++|.....+.+.+|++..||+.+|+||++|+++++||++||||||||||++..|.+.|++.++ | .++.+|
T Consensus 252 ~dg~~~y~~~~~~~g~~~~w~~~~~~~~~~eVr~~l~~~~~~W~~e~~iDG~R~Dav~~~ly~d~~~~~-~---~~~~~g 327 (639)
T PRK14706 252 FDGGPLYEYADPRKGYHYDWNTYIFDYGRNEVVMFLIGSALKWLQDFHVDGLRVDAVASMLYLDFSRTE-W---VPNIHG 327 (639)
T ss_pred cCCCcceeccCCcCCcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHhCCCeEEEeeehheeecccCccc-c---cccccC
Confidence 777544445544456778999888999999999999999999999999999999999999888877653 4 356788
Q ss_pred CCCCchHHHHHHHHHHHHHhhCCCeEEEEEccCCCCCCccccccCCcccCcccC-CC-----------------------
Q psy9003 1153 LNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDYRLV-SL----------------------- 1208 (1276)
Q Consensus 1153 ~~~d~~a~~Fl~el~~~Vr~~~PdvilIAE~~s~~p~~~~p~~~gglGFD~~~n-~l----------------------- 1208 (1276)
++.+.+++.||+++++.+++.+|++++|||+|+.+|.+++|+.. |+|||++|+ .+
T Consensus 328 g~~n~~a~~fl~~ln~~v~~~~p~~~~iAE~~~~~~~v~~~~~~-G~gFD~~w~~~w~~~~l~~~~~~~~~r~~~~~~lt 406 (639)
T PRK14706 328 GRENLEAIAFLKRLNEVTHHMAPGCMMIAEESTSFPGVTVPTPY-GLGFDYKWAMGWMNDTLAYFEQDPLWRKYHHHKLT 406 (639)
T ss_pred CcccHHHHHHHHHHHHHHHHhCCCeEEEEECCCCCcCcccccCC-CCccccEeccHHHHHHHHHhccCchhhhhchhccc
Confidence 89999999999999999999999999999999999999999875 999999987 22
Q ss_pred --------c---------c------c--------------------hh--h-----------------------------
Q psy9003 1209 --------E---------G------S--------------------AL--S----------------------------- 1214 (1276)
Q Consensus 1209 --------E---------e------s--------------------aL--S----------------------------- 1214 (1276)
+ + + ++ +
T Consensus 407 ~~~~y~~~e~~il~~SHDev~~~k~sl~~k~~g~~~~~~a~~r~~~~~~~t~PG~pLiFmG~EfG~~~ew~~~~~l~W~l 486 (639)
T PRK14706 407 FFNVYRTSENYVLAISHDEVVHLKKSMVMKMPGDWYTQRAQYRAFLAMMWTTPGKKLLFMGQEFAQGTEWNHDASLPWYL 486 (639)
T ss_pred hhhhhhccccEecCCCCccccCCccchHhHcCCCHHHHHHHHHHHHHHHHhCCCCcEEEeccccCCCCCCCcccCCCCcc
Confidence 0 0 0 00 0
Q ss_pred ---------HHHHHHHHHHHHHhcccCCC------CCeeEeecCCCeEEEEEcCc------EEEEEeCCCCCCccccccc
Q psy9003 1215 ---------ALFDAAMNTTEERFKWLSAD------PGYVSTKHEGDKVIIFERAG------LLFAFNFNGTQSFTDYRGK 1273 (1276)
Q Consensus 1215 ---------~~F~~~Ln~l~~~~p~L~~~------~~~~l~nHD~~RVlsf~R~~------ll~v~N~~~~~s~~~y~~~ 1273 (1276)
.+|.+.|++++++.|+|+.+ ..|+..++..++|++|.|.. ++||+||+| .++++|+||
T Consensus 487 ~~~~~~~~l~~~~k~L~~L~k~~paL~~gd~~~~~f~wi~~~d~~~~VlaF~R~~~~~~~~vlvV~Nfs~-~~~~~y~ig 565 (639)
T PRK14706 487 TDVPDHRGVMNLVRRLNQLYRERPDWHRGDKREEGLYWVSADDTDNSVYAYVRRDSESGAWSLAVANLTP-VYREQYRIG 565 (639)
T ss_pred cCCHHHHHHHHHHHHHHHHHHhCHHHhhCCCCCCCeEEEEeecCCCCEEEEEEecCCCCeeEEEEEeCCC-CCcCCeEEC
Confidence 45889999999999999643 22455566677899999952 999999999 589999999
Q ss_pred cCC
Q psy9003 1274 SNC 1276 (1276)
Q Consensus 1274 ~~~ 1276 (1276)
||.
T Consensus 566 ~p~ 568 (639)
T PRK14706 566 VPQ 568 (639)
T ss_pred CCC
Confidence 983
|
|
| >PRK14705 glycogen branching enzyme; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-65 Score=648.41 Aligned_cols=422 Identities=26% Similarity=0.463 Sum_probs=344.6
Q ss_pred ccccCCCCCcccCe-eecCceEEEEEccCCcEEEEEccCCCCcccccccee-cCCCeEEEEcCCCCCCCcccCcccEEEE
Q psy9003 763 CHKAGLFGTPEQLK-YLVDECHKAGLLCFMHVVCAAGDFNNWNREEFAYKK-LDFGKWELVLPPNPDGSCKLTHLSQVKL 840 (1276)
Q Consensus 763 Y~~~G~~Gtp~G~~-y~~D~a~FalwAP~A~~VsLvGDFN~wd~~~~pM~r-~~~GVWsl~Ip~~~~G~~~i~hGs~YkY 840 (1276)
|+.+|++-...... -.+++++|+||||+|++|+|+||||+|++..++|.+ ...|+|+++||+...| ..|+|
T Consensus 620 y~~lGah~~~~~~~~~~~~Gv~F~VWAP~A~~V~vvgdFN~w~~~~~~m~~~~~~GvW~~fipg~~~G-------~~Yky 692 (1224)
T PRK14705 620 WDVLGAHVQHYKSSLGDVDGVSFAVWAPNAQAVRVKGDFNGWDGREHSMRSLGSSGVWELFIPGVVAG-------ACYKF 692 (1224)
T ss_pred HHhcCCeEeeccCccCCCCeEEEEEECCCCCEEEEEEEecCCCCCcccceECCCCCEEEEEECCCCCC-------CEEEE
Confidence 77788876432100 025789999999999999999999999998899987 4679999999988766 59999
Q ss_pred EEEEeCCeeeeecCCcceEeecCCC-CCccccc-eeeCCCCCCCCCcCCCCC---CCCCCceEEEEecCCccccCccCcH
Q psy9003 841 VVRNQHGHLLDRLSPWATYVTEPPV-VGHAYEQ-RIWNPKPQDKHKWTSSKP---KKPDNLKIYESHVGICTQEQKCASY 915 (1276)
Q Consensus 841 rV~~~dG~~~~~~DPYAkav~~~~~-~s~v~~~-~~~~p~~~~~y~W~~~rp---~~~~d~vIYElHVr~ft~~~~~Gtf 915 (1276)
+|.+.+|.++.+.||||++...++. .|++.+. ..|.+. +|...+. +..++++|||+|+|+|+. .++|
T Consensus 693 ~i~~~~g~~~~k~DPyA~~~e~~p~~aS~V~d~~~~w~d~-----~W~~~r~~~~~~~~p~~IYEvHvgsf~~---~~~~ 764 (1224)
T PRK14705 693 EILTKAGQWVEKADPLAFGTEVPPLTASRVVEASYAFKDA-----EWMSARAERDPHNSPMSVYEVHLGSWRL---GLGY 764 (1224)
T ss_pred EEEcCCCcEEecCCccccccccCCCCCeEEeCCCCCcCCh-----hhhhccccCCCCcCCcEEEEEEeccccc---CCch
Confidence 9998889999999999999887653 3444332 122222 4544332 224789999999999986 4899
Q ss_pred HHHHHhhhhHHHHcCCCCCccceeecccccccccccccceeeccCccccccccccccCCCcccCCCcccccccccccccc
Q psy9003 916 EDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAESHDQALVGDKTIAFWLMDKEMYT 995 (1276)
Q Consensus 916 ~gl~ek~LdyLK~LGVna~d~wV~LmP~f~~eew~~~~pi~~l~~~Pi~E~~i~~~~S~~~~~WGYdp~nyf~~d~~~y~ 995 (1276)
.++++++|||||+||||+ |||| |++|+ |.. .+|||++.+||
T Consensus 765 ~~l~~~lldYlk~LGvt~----IeLm--------------------Pv~e~--p~~-----~swGY~~~~y~-------- 805 (1224)
T PRK14705 765 RELAKELVDYVKWLGFTH----VEFM--------------------PVAEH--PFG-----GSWGYQVTSYF-------- 805 (1224)
T ss_pred HHHHHHHHHHHHHhCCCE----EEEC--------------------ccccC--CCC-----CCCCCCccccC--------
Confidence 999998789999999999 9999 44444 333 35999999999
Q ss_pred ccCCCCCCcccccccccccCCCCCccccccccccCCCCCCHHHHHHHHHHHHHcCCEEEEEEeccccCCcccCCCcCCCC
Q psy9003 996 HMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDG 1075 (1276)
Q Consensus 996 ~~S~~~Dp~~~~dap~~~yas~s~hkYt~D~~~ID~~~Gt~eEfK~LV~alHk~GI~VILDvV~NHt~~~~~~~~~~f~g 1075 (1276)
+|+ ++||+++|||+||++||++||+||||+|+||++.+ .+++..|+|
T Consensus 806 -------------ap~-------------------~ryGt~~dfk~lVd~~H~~GI~VILD~V~nH~~~d-~~~l~~fdg 852 (1224)
T PRK14705 806 -------------APT-------------------SRFGHPDEFRFLVDSLHQAGIGVLLDWVPAHFPKD-SWALAQFDG 852 (1224)
T ss_pred -------------CcC-------------------cccCCHHHHHHHHHHHHHCCCEEEEEeccccCCcc-hhhhhhcCC
Confidence 676 88999999999999999999999999999999877 466777887
Q ss_pred CCCcccccCC-CCCCCCCCCcCCCCCcHHHHHHHHHHHHHHHHhCCCcEEccCCccccccccCCCCCC-CCCCCccccCC
Q psy9003 1076 TQACFFHDGP-RGTHPLWDSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEG-FSGHYDEYFGL 1153 (1276)
Q Consensus 1076 ~~~~Yy~~~~-~g~~~~W~g~~LN~~np~Vr~~Iidsl~~Wv~eygVDGFRfD~a~~L~~~d~g~g~~-~~~~~~~~~~~ 1153 (1276)
.. .|++.++ .+.++.|++..||+++|+||+||+++++||++||||||||||++..|.|.|+++.++ |. .+.+|+
T Consensus 853 ~~-~y~~~d~~~g~~~~Wg~~~fn~~~~eVr~fli~~a~~Wl~eyhiDGfR~Dav~~mly~Dysr~~g~w~---pn~~gg 928 (1224)
T PRK14705 853 QP-LYEHADPALGEHPDWGTLIFDFGRTEVRNFLVANALYWLDEFHIDGLRVDAVASMLYLDYSREEGQWR---PNRFGG 928 (1224)
T ss_pred Cc-ccccCCcccCCCCCCCCceecCCCHHHHHHHHHHHHHHHHHhCCCcEEEeehhhhhhccccccccccc---ccccCC
Confidence 63 4444443 477899999999999999999999999999999999999999999999988876554 32 467788
Q ss_pred CCCchHHHHHHHHHHHHHhhCCCeEEEEEccCCCCCCccccccCCcccCcccC-CC-----c------------------
Q psy9003 1154 NVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDYRLV-SL-----E------------------ 1209 (1276)
Q Consensus 1154 ~~d~~a~~Fl~el~~~Vr~~~PdvilIAE~~s~~p~~~~p~~~gglGFD~~~n-~l-----E------------------ 1209 (1276)
+.+.+++.||+++++.+++.+|++++|||+++.+|.+++|+..||+||||+|| .+ +
T Consensus 929 ~en~~ai~fl~~ln~~v~~~~p~~~~IAEest~~p~vt~p~~~GGlGFd~kWnmgwmhd~l~Y~~~dp~~r~~~~~~ltf 1008 (1224)
T PRK14705 929 RENLEAISFLQEVNATVYKTHPGAVMIAEESTAFPGVTAPTSHGGLGFGLKWNMGWMHDSLKYASEDPINRKWHHGTITF 1008 (1224)
T ss_pred ccChHHHHHHHHHHHHHHHHCCCeEEEEEcCCCCcCccccccCCCccCCcEecchhhHHHHHHhhhCcchhhcccchHHH
Confidence 99999999999999999999999999999999999999999999999999999 33 0
Q ss_pred -------cc------------------------------------hh---------------------------------
Q psy9003 1210 -------GS------------------------------------AL--------------------------------- 1213 (1276)
Q Consensus 1210 -------es------------------------------------aL--------------------------------- 1213 (1276)
|+ ++
T Consensus 1009 ~~~ya~~e~fvl~~SHDevvhgk~sl~~km~Gd~~~k~a~lR~~~a~~~~~PGk~LlFMG~Efgq~~ew~~~~~LdW~ll 1088 (1224)
T PRK14705 1009 SLVYAFTENFLLPISHDEVVHGKGSMLRKMPGDRWQQLANLRAFLAYQWAHPGKQLIFMGTEFGQEAEWSEQHGLDWFLA 1088 (1224)
T ss_pred HHHHHhhcCEecccccccccccchhHHHhCCCcHHHHHHHHHHHHHHHHhcCCcCEEECccccCCCCCccccccCCCccc
Confidence 00 00
Q ss_pred -------hHHHHHHHHHHHHHhcccCCC----CC--eeEeecCCCeEEEEEcC-----cEEEEEeCCCCCCccccccccC
Q psy9003 1214 -------SALFDAAMNTTEERFKWLSAD----PG--YVSTKHEGDKVIIFERA-----GLLFAFNFNGTQSFTDYRGKSN 1275 (1276)
Q Consensus 1214 -------S~~F~~~Ln~l~~~~p~L~~~----~~--~~l~nHD~~RVlsf~R~-----~ll~v~N~~~~~s~~~y~~~~~ 1275 (1276)
-..|.+.||+++++.|+|+.. .. |+..++..+.|++|.|. .+++|+||+|. .+++|+||||
T Consensus 1089 ~~~~h~~~~~~~rdLn~ly~~~paL~~~d~~~~gf~wi~~~d~~~~vlaf~R~~~~~~~vlvv~Nftp~-~~~~y~igvp 1167 (1224)
T PRK14705 1089 DIPAHRGIQLLTKDLNELYTSTPALYQRDNEPGGFQWINGGDADRNVLSFIRWDGDGNPLVCAINFSGG-PHKGYTLGVP 1167 (1224)
T ss_pred CChhhHHHHHHHHHHHHHHhcChhhhccCCCCCceEEeecCCCCCcEEEEEEeCCCCCEEEEEEcCCCC-CccCceECCC
Confidence 066999999999999998632 22 33334556679999993 39999999996 9999999998
Q ss_pred C
Q psy9003 1276 C 1276 (1276)
Q Consensus 1276 ~ 1276 (1276)
.
T Consensus 1168 ~ 1168 (1224)
T PRK14705 1168 A 1168 (1224)
T ss_pred C
Confidence 4
|
|
| >PLN02960 alpha-amylase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-64 Score=617.77 Aligned_cols=447 Identities=39% Similarity=0.704 Sum_probs=374.0
Q ss_pred cccChhhhhhhHhhccccCCCCCcccCeeecCceEEEEEccCCcEEEEEccCCCCccccccce-----ecCCCeEEEEcC
Q psy9003 749 LFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLLCFMHVVCAAGDFNNWNREEFAYK-----KLDFGKWELVLP 823 (1276)
Q Consensus 749 ~~~~~e~l~~F~~~Y~~~G~~Gtp~G~~y~~D~a~FalwAP~A~~VsLvGDFN~wd~~~~pM~-----r~~~GVWsl~Ip 823 (1276)
++.....|+.|+.+|+.+|.+-+++. ++.|+.|||.|..++|+||||+|+++.++|. |++.|+|++.++
T Consensus 103 ~~~~~~~~~~~~~~~e~~g~~~~~~~------~~~~~~wap~a~~~~~~gdfn~w~~~~~~~~~g~~~~~~~~~~~~~~~ 176 (897)
T PLN02960 103 IFKRHIDLKEFASGFELLGMHRHPEH------RVDFMEWAPGARYCSLVGDFNNWSPTENRAREGYFGHDDFGYWFIILE 176 (897)
T ss_pred HHHhhccHHHHhhHHHHhccccCccc------CeEEEEEcCCceeEEEeecccCCCcccchhhcccccccccceEEEEec
Confidence 34445578899999999999999874 5688999999999999999999999999877 578999999997
Q ss_pred C-CCCCC-------------------------------------------------------------------------
Q psy9003 824 P-NPDGS------------------------------------------------------------------------- 829 (1276)
Q Consensus 824 ~-~~~G~------------------------------------------------------------------------- 829 (1276)
. ..+|+
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (897)
T PLN02960 177 DKLREGEEPDELYFQEYNYVDDYDKGDSGIDIEELFQKMNDEYWEPGEDRFIKNRLEVPAKLYEQMFGPNGPQTLEELGD 256 (897)
T ss_pred hhhhcCCCcchhhhhhhccccccccCCCCCCHHHHHHHhhhhhcCCcchhhhhccchhHHHHHHHhhCCCCCcchhhhhc
Confidence 4 22222
Q ss_pred ---------------------------------------------------------------------------cccCc
Q psy9003 830 ---------------------------------------------------------------------------CKLTH 834 (1276)
Q Consensus 830 ---------------------------------------------------------------------------~~i~h 834 (1276)
+.+.|
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~gw~~~~ip~~~h 336 (897)
T PLN02960 257 IPDAETRYKEWKKEHKDDDPSNLPPLDIIDTGQPYDIFNVVTDPVWREKFLEKKPPLPYWEETRKGRKAWLKKYIPAIPH 336 (897)
T ss_pred cCccchhhhhhhhhccCCChhhCCCeeecCCCcccccceeccCHHHHHHHhccCCCCcceeeeeecCCcEEEEEccCCCC
Confidence 01118
Q ss_pred ccEEEEEEEEeCCeeeeecCCcceEeecCCCCCccccceeeCCCCCCCCCcCCCCCCCCCCceEEEEecCCccccCccCc
Q psy9003 835 LSQVKLVVRNQHGHLLDRLSPWATYVTEPPVVGHAYEQRIWNPKPQDKHKWTSSKPKKPDNLKIYESHVGICTQEQKCAS 914 (1276)
Q Consensus 835 Gs~YkYrV~~~dG~~~~~~DPYAkav~~~~~~s~v~~~~~~~p~~~~~y~W~~~rp~~~~d~vIYElHVr~ft~~~~~Gt 914 (1276)
|++|+|+|+..+|. ..++||||+++...+. +......+|+|...+.|+|...+|+.+.+++|||+||++|+.++..||
T Consensus 337 G~~Yky~v~~~~g~-~~~vdpyA~~~qp~~~-~~~~~~v~~d~~~~~~y~W~~~~p~~~~~~vIYElHvg~~~~e~~~gt 414 (897)
T PLN02960 337 GSKYRVYFNTPDGP-LERVPAWATYVLPDPD-GKQWYAIHWEPPPEEAYKWKFERPKVPKSLRIYECHVGISGSEPKISS 414 (897)
T ss_pred CCEEEEEEEeCCCc-eEECCCcceeEeecCC-CccceEEEeCCCCCCCCCCCCCCCCCCCCcEEEEEecccccCCCCCCC
Confidence 99999999877665 5689999998855432 211223456764335699998877777899999999999998888999
Q ss_pred HHHHHHhhhhHHHHcCCCCCccceeecccccccccccccceeeccCccccccccccccCCCcccCCCccccccccccccc
Q psy9003 915 YEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAESHDQALVGDKTIAFWLMDKEMY 994 (1276)
Q Consensus 915 f~gl~ek~LdyLK~LGVna~d~wV~LmP~f~~eew~~~~pi~~l~~~Pi~E~~i~~~~S~~~~~WGYdp~nyf~~d~~~y 994 (1276)
|.++++++|||||+||||+ |||||+ .++ +.. .+|||++.+||
T Consensus 415 f~~~~e~~LdYLk~LGvt~----IeLmPv--------------------~e~--~~~-----~swGY~~~~yf------- 456 (897)
T PLN02960 415 FKEFTQKVLPHVKKAGYNA----IQLIGV--------------------QEH--KDY-----SSVGYKVTNFF------- 456 (897)
T ss_pred HHHHHHHHHHHHHHcCCCE----EEECCc--------------------ccC--CCC-----CCCCCCcccCC-------
Confidence 9999988899999999999 999944 443 323 34999999999
Q ss_pred cccCCCCCCcccccccccccCCCCCccccccccccCCCCCCHHHHHHHHHHHHHcCCEEEEEEeccccCCcccCCCcCCC
Q psy9003 995 THMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFD 1074 (1276)
Q Consensus 995 ~~~S~~~Dp~~~~dap~~~yas~s~hkYt~D~~~ID~~~Gt~eEfK~LV~alHk~GI~VILDvV~NHt~~~~~~~~~~f~ 1074 (1276)
+|+ ++||++++||+||++||++||+||||+|+||++.++..++..|+
T Consensus 457 --------------a~~-------------------~~yGtp~dfk~LVd~aH~~GI~VILDvV~NH~~~d~~~~L~~FD 503 (897)
T PLN02960 457 --------------AVS-------------------SRFGTPDDFKRLVDEAHGLGLLVFLDIVHSYAAADEMVGLSLFD 503 (897)
T ss_pred --------------Ccc-------------------cccCCHHHHHHHHHHHHHCCCEEEEEecccccCCccccchhhcC
Confidence 666 88999999999999999999999999999999998766778899
Q ss_pred CCCCcccccCCCCCCCCCCCcCCCCCcHHHHHHHHHHHHHHHHhCCCcEEccCCccccccccCCCCCCCCCCCccccCCC
Q psy9003 1075 GTQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLN 1154 (1276)
Q Consensus 1075 g~~~~Yy~~~~~g~~~~W~g~~LN~~np~Vr~~Iidsl~~Wv~eygVDGFRfD~a~~L~~~d~g~g~~~~~~~~~~~~~~ 1154 (1276)
|....||..+..+.++.|+.+.||+.+|+||+||+++++||++||||||||||++..|.|.++|. ..+.|.+..++...
T Consensus 504 G~~~~Yf~~~~~g~~~~WG~~~fNy~~~eVr~fLlsna~yWl~EyhIDGfR~DAV~sMlY~d~g~-~~~~G~~~~~~n~~ 582 (897)
T PLN02960 504 GSNDCYFHSGKRGHHKRWGTRMFKYGDHEVLHFLLSNLNWWVTEYRVDGFQFHSLGSMLYTHNGF-ASFTGDLDEYCNQY 582 (897)
T ss_pred CCccceeecCCCCccCCCCCcccCCCCHHHHHHHHHHHHHHHHHHCCCceeecccceeeeeccCc-cccCCcccccCCcc
Confidence 97767887766777889999999999999999999999999999999999999999999988764 23444444444445
Q ss_pred CCchHHHHHHHHHHHHHhhCCCeEEEEEccCCCCCCccccccCCcccCcccC-CC-------------------------
Q psy9003 1155 VDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDYRLV-SL------------------------- 1208 (1276)
Q Consensus 1155 ~d~~a~~Fl~el~~~Vr~~~PdvilIAE~~s~~p~~~~p~~~gglGFD~~~n-~l------------------------- 1208 (1276)
.+.+++.||+++++.+++..|++++|||+++++|.+++|...||+||||+|+ ..
T Consensus 583 ~d~~Ai~fL~~lN~~v~~~~P~vilIAEdss~~P~vt~P~~~GGLGFDYkwnmG~~~d~l~~l~~~~~r~~~~~~l~~s~ 662 (897)
T PLN02960 583 VDRDALIYLILANEMLHQLHPNIITIAEDATFYPGLCEPTSQGGLGFDYYVNLSPSEMWLSLLENVPDQEWSMSKIVSTL 662 (897)
T ss_pred CCchHHHHHHHHHHHHHhhCCCeEEEEECCCCCCCccccCCCCCCCcccccCCCcHHHHHHHHHhCcCCCCChhccEeee
Confidence 7889999999999999999999999999999999999999999999999988 32
Q ss_pred --------------c---c-----c-----------------------h---------h----h----------------
Q psy9003 1209 --------------E---G-----S-----------------------A---------L----S---------------- 1214 (1276)
Q Consensus 1209 --------------E---e-----s-----------------------a---------L----S---------------- 1214 (1276)
| + . + + +
T Consensus 663 ~~~~~~~~~~v~Y~EnHDQVv~Gkrsl~~rL~g~~~~k~~~~~~~~lRa~al~~~~rllt~~~~Pg~pLlFMG~EFGh~e 742 (897)
T PLN02960 663 VKNKENADKMLSYAENHNQSISGGKSFAEILLGKNKESSPAVKELLLRGVSLHKMIRLITFTLGGSAYLNFMGNEFGHPE 742 (897)
T ss_pred ccCcCCcceEEEEecCcCccccCcccHHHHCCCchhhhhcccChhhhhhhhHHHHHHHHHHHhCCCCCEeeCccccCChh
Confidence 0 0 0 0 0 0
Q ss_pred -------------------------------HHHHHHHHHHHHHhcccCCCCCeeEeecCCCeEEEEEcCcEEEEEeCCC
Q psy9003 1215 -------------------------------ALFDAAMNTTEERFKWLSADPGYVSTKHEGDKVIIFERAGLLFAFNFNG 1263 (1276)
Q Consensus 1215 -------------------------------~~F~~~Ln~l~~~~p~L~~~~~~~l~nHD~~RVlsf~R~~ll~v~N~~~ 1263 (1276)
.+|.+.|++++++.|+|..+..++...++.++|++|.|+.++||+||+|
T Consensus 743 ~~~~PdP~n~~tf~~s~LdW~Ll~~~~h~~l~~f~rdL~~Lr~~~paL~~g~~~i~~~d~~~~Viaf~R~~llvV~NFsp 822 (897)
T PLN02960 743 RVEFPRASNNFSFSLANRRWDLLEDGVHAHLFSFDKALMALDEKYLILSRGLPNIHHVNDTSMVISFTRGPLLFAFNFHP 822 (897)
T ss_pred hhhCcCCCCccccccccCCcccccChhHHHHHHHHHHHHHHHhcChhhcCCcceeeeecCCCCEEEEEeCCeEEEEeCCC
Confidence 3488999999999999988888888888888999999999999999999
Q ss_pred CCCccccccccC
Q psy9003 1264 TQSFTDYRGKSN 1275 (1276)
Q Consensus 1264 ~~s~~~y~~~~~ 1275 (1276)
.+++.+|+||||
T Consensus 823 ~~~~~~Y~vgvP 834 (897)
T PLN02960 823 TNSYEEYEVGVE 834 (897)
T ss_pred CCcCcCceECCC
Confidence 889999999997
|
|
| >KOG0470|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-63 Score=584.04 Aligned_cols=451 Identities=46% Similarity=0.745 Sum_probs=390.4
Q ss_pred hhhhhhHhhccccCCCCCcccCeeecCceEEEEEccCCcEEEEEccCCCCccccccce-ecCCCeEEEEcCCCCCCCccc
Q psy9003 754 EQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLLCFMHVVCAAGDFNNWNREEFAYK-KLDFGKWELVLPPNPDGSCKL 832 (1276)
Q Consensus 754 e~l~~F~~~Y~~~G~~Gtp~G~~y~~D~a~FalwAP~A~~VsLvGDFN~wd~~~~pM~-r~~~GVWsl~Ip~~~~G~~~i 832 (1276)
.+++.|..+|+.+|.+-+|+|- +.|+.|||.|..|+++||||+|+.....|. +.+.|+|++.+|...+|.+..
T Consensus 93 ~~l~~~~~~y~~~g~h~~~d~~------v~~~ewaP~a~~~s~~gd~n~W~~~~~~~~~k~~~g~w~i~l~~~~~~s~~v 166 (757)
T KOG0470|consen 93 GGLSAFSRGYEPLGTHRTPDGR------VDFTEWAPLAEAVSLIGDFNNWNPSSNELKPKDDLGVWEIDLPPKVNGSGAV 166 (757)
T ss_pred CChhhhhccccccceeccCCCc------eeeeeecccccccccccccCCCCCcccccCcccccceeEEecCcccCCCccc
Confidence 3556888889988888888872 467799999999999999999998877776 788999999999998888999
Q ss_pred CcccEEEEEEEEeCCeeeeecCCcceEeecCCCCCccccceeeCCCCCCCCCcCCCCCCCCC-CceEEEEecCCccc-cC
Q psy9003 833 THLSQVKLVVRNQHGHLLDRLSPWATYVTEPPVVGHAYEQRIWNPKPQDKHKWTSSKPKKPD-NLKIYESHVGICTQ-EQ 910 (1276)
Q Consensus 833 ~hGs~YkYrV~~~dG~~~~~~DPYAkav~~~~~~s~v~~~~~~~p~~~~~y~W~~~rp~~~~-d~vIYElHVr~ft~-~~ 910 (1276)
+|++.+++++.++.|++....||||+.+...+ ....+....|+|+...+|+|...+|+.|+ +++|||+|||+||. ++
T Consensus 167 ~H~s~~~~~~~~p~g~~~~~~~~~~~~~~~~~-~~~q~~~~~~~~~~e~~w~~~~~~p~~P~~sL~IYE~HVrgfS~~E~ 245 (757)
T KOG0470|consen 167 PHGSVSKIHLSTPYGETCKRIPAWATYVDQEG-EGPQYYGIYWDPSPEFDWGFKHSRPKIPESSLRIYELHVRGFSSHES 245 (757)
T ss_pred cccceeEEEeecCCcceeeccChHhhcccCCC-cccceeeccCCCCCcccccccCCCCCCChhheEEEEEeeccccCCCC
Confidence 99999999999999999999999999987765 35566677888874444555556777775 99999999999985 22
Q ss_pred c---cCcHHHHHHhhhhHHHHcCCCCCccceeecccccccccccccceeeccCccccccccccccCCCcccCCCcccccc
Q psy9003 911 K---CASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAESHDQALVGDKTIAFW 987 (1276)
Q Consensus 911 ~---~Gtf~gl~ek~LdyLK~LGVna~d~wV~LmP~f~~eew~~~~pi~~l~~~Pi~E~~i~~~~S~~~~~WGYdp~nyf 987 (1276)
. +|.|++++++.|||||.||+|| |||| |++|+ . +..+.|||.|++||
T Consensus 246 ~v~~~~gY~~FteKvlphlK~LG~Na----iqLm--------------------pi~Ef--~----~~~~s~GY~~~nFF 295 (757)
T KOG0470|consen 246 KVNTRGGYLGFTEKVLPHLKKLGYNA----IQLM--------------------PIFEF--G----HYYASWGYQVTNFF 295 (757)
T ss_pred ccccccchhhhhhhhhhHHHHhCccc----eEEe--------------------ehhhh--h----hhhhccCcceeEee
Confidence 2 3449999999999999999999 9999 55554 1 23446999999999
Q ss_pred ccccccccccCCCCCCcccccccccccCCCCCccccccccccCCCCCCHHHHHHHHHHHHHcCCEEEEEEeccccCCccc
Q psy9003 988 LMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVL 1067 (1276)
Q Consensus 988 ~~d~~~y~~~S~~~Dp~~~~dap~~~yas~s~hkYt~D~~~ID~~~Gt~eEfK~LV~alHk~GI~VILDvV~NHt~~~~~ 1067 (1276)
+|.++|+|++ ..+++.|||.||++||..||.|+||||+||++.+..
T Consensus 296 ---------------------apssrYgt~~-------------s~~ri~efK~lVd~aHs~GI~VlLDVV~sHaa~n~~ 341 (757)
T KOG0470|consen 296 ---------------------APSSRYGTPE-------------SPCRINEFKELVDKAHSLGIEVLLDVVHSHAAKNSK 341 (757)
T ss_pred ---------------------cccccccCCC-------------cccchHHHHHHHHHHhhCCcEEehhhhhhhcccCcC
Confidence 8887788752 246688999999999999999999999999999777
Q ss_pred CCCcCCCCCC-CcccccCCCCCCCCCCCcCCCCCcHHHHHHHHHHHHHHHHhCCCcEEccCCccccccccCCCCCCCCCC
Q psy9003 1068 DGLNEFDGTQ-ACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGH 1146 (1276)
Q Consensus 1068 ~~~~~f~g~~-~~Yy~~~~~g~~~~W~g~~LN~~np~Vr~~Iidsl~~Wv~eygVDGFRfD~a~~L~~~d~g~g~~~~~~ 1146 (1276)
++++.|+|++ ..||+.++.+.+..|+++.||+++|+|+++|+++++||++||+|||||||+++.|.|.+++.+.+|.|+
T Consensus 342 d~l~~fdGid~~~Yf~~~~r~~h~~~~~r~fn~~~~~V~rflL~nLr~WVtEY~vDGFRFD~~ssm~~~~~g~~~~f~gd 421 (757)
T KOG0470|consen 342 DGLNMFDGIDNSVYFHSGPRGYHNSWCSRLFNYNHPVVLRFLLSNLRWWVTEYHVDGFRFDLVSSMLYTHHGNAAGFDGD 421 (757)
T ss_pred CcchhccCcCCceEEEeCCcccccccccccccCCCHHHHHHHHHHHHHHHHheeccceEEcchhhhhhhccccccccCCc
Confidence 8888999999 689999999999999999999999999999999999999999999999999999999999998899999
Q ss_pred CccccCCC---CCchHHHHHHHHHHHHHhhCCCeEEEEEccCCCCCC-ccccccCCcccC--cccC---CC---------
Q psy9003 1147 YDEYFGLN---VDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPAS-CRPVTEGGTGFD--YRLV---SL--------- 1208 (1276)
Q Consensus 1147 ~~~~~~~~---~d~~a~~Fl~el~~~Vr~~~PdvilIAE~~s~~p~~-~~p~~~gglGFD--~~~n---~l--------- 1208 (1276)
+..++|.. .+.+++-++...++.++...|+.+.+||+.+++|.+ +.|..+|+.||| |+.+ +.
T Consensus 422 ~~~y~g~~g~~~d~~~l~~lmlAnd~~l~~~~~~It~~~D~~gm~~~~~~P~~~g~~~~d~~yr~~~~~~~k~~~~Lk~~ 501 (757)
T KOG0470|consen 422 YIEYFGTDGSFVDVDALVYLMLANDPLLGGTPGLITDAEDVSGMPGLGCFPVWQGGAGFDGLYRLAVRLFDKWIQLLKGS 501 (757)
T ss_pred chhhhccCCCcccccHHHHHHhhcchhhhcCCcceEeeeccccCCCcCCccccccccccchhhhHHhhhHHHHHHHhccC
Confidence 99999886 778899999999999999999999999999999999 999999999999 6533 11
Q ss_pred --------------------c------cc-------------------------------------------------hh
Q psy9003 1209 --------------------E------GS-------------------------------------------------AL 1213 (1276)
Q Consensus 1209 --------------------E------es-------------------------------------------------aL 1213 (1276)
+ ++ ++
T Consensus 502 ~~~~~~~gs~~~~ltN~R~~e~~v~y~~~HDq~~v~d~~T~af~~l~d~~~~~~~~~g~p~~~~idR~r~~h~~~~lit~ 581 (757)
T KOG0470|consen 502 SDAEWIMGSIDYTLTNRRYPEKSVNYAESHDQALVGDLVTIAFKWLMDETSWNCGSEGTPGTSVIDRGRALHKMIRLITL 581 (757)
T ss_pred chhheeccCcceeeeccccccceeeeeeccCCccccceeeecchhhcchhhhcccccCCCcchHHHHHHHHHHHHHHHHH
Confidence 0 00 00
Q ss_pred ------------------------------h-----------------------HHHHHHHHHHHHHhcccCCCCCeeEe
Q psy9003 1214 ------------------------------S-----------------------ALFDAAMNTTEERFKWLSADPGYVST 1240 (1276)
Q Consensus 1214 ------------------------------S-----------------------~~F~~~Ln~l~~~~p~L~~~~~~~l~ 1240 (1276)
| .+|++.++.+..+.-++.....++..
T Consensus 582 ~lg~g~pl~fmGdEfGh~e~~d~~~~~nn~s~~~~r~~~f~~~~~~~~r~~~~l~~F~~~~~~L~~~~~~~~~~~~~~~~ 661 (757)
T KOG0470|consen 582 GLGGGAPLNFMGDEFGHPEWLDFPRYGNNFSYNYARRKRFDLADSDLLRYRRQLNSFDREMNLLEERNGFTTSELQYISL 661 (757)
T ss_pred hccCccceeccccccCCccccCCCcccCCccccccCccccccccchhhhhhhhhhhhhhHHHHHHHhccccccccccccc
Confidence 0 67888899888888888777778899
Q ss_pred ecCCCeEEEEEcCcEEEEEeCCCCCCccccccccC
Q psy9003 1241 KHEGDKVIIFERAGLLFAFNFNGTQSFTDYRGKSN 1275 (1276)
Q Consensus 1241 nHD~~RVlsf~R~~ll~v~N~~~~~s~~~y~~~~~ 1275 (1276)
.|+.+++++|+|+.++|||||.+++|+.+|+||++
T Consensus 662 k~e~~~~i~fer~~~~~vfn~h~~~s~~d~~vg~n 696 (757)
T KOG0470|consen 662 KHEADEVIVFERGPLLFVFNFHDSNSYIDYRVGFN 696 (757)
T ss_pred cchhhheeeeccCCeEEEEEecCCCCCceeEEEec
Confidence 99999999999999999999999999999999986
|
|
| >TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-60 Score=582.04 Aligned_cols=421 Identities=29% Similarity=0.492 Sum_probs=332.2
Q ss_pred hhccccCCCCCcccCeeecCceEEEEEccCCcEEEEEccCCCCccccccceecC-CCeEEEEcCCCCCCCcccCcccEEE
Q psy9003 761 DECHKAGLFGTPEQLKYLVDECHKAGLLCFMHVVCAAGDFNNWNREEFAYKKLD-FGKWELVLPPNPDGSCKLTHLSQVK 839 (1276)
Q Consensus 761 ~~Y~~~G~~Gtp~G~~y~~D~a~FalwAP~A~~VsLvGDFN~wd~~~~pM~r~~-~GVWsl~Ip~~~~G~~~i~hGs~Yk 839 (1276)
+.|+.+|.+.++.+ .+++++|++|||+|++|+|++|||+|+....+|.+.. .|+|++.+|+...| ..|+
T Consensus 12 ~~~~~LGah~~~~~---~~~g~~FrvwAP~A~~V~L~~dfn~w~~~~~~m~~~~~~Gvw~~~i~~~~~g-------~~Y~ 81 (613)
T TIGR01515 12 RSYELLGSHYMELD---GVSGTRFCVWAPNAREVRVAGDFNYWDGREHPMRRRNDNGIWELFIPGIGEG-------ELYK 81 (613)
T ss_pred ChHHhcCceEeccC---CcCcEEEEEECCCCCEEEEEEecCCCCCceecceEecCCCEEEEEeCCCCCC-------CEEE
Confidence 44667777766422 1267899999999999999999999988888998764 89999999976554 6999
Q ss_pred EEEEEeCCeeeeecCCcceEeecCCC-CCcccc--ceeeCCCCCCCCCcCCCCCC---CCCCceEEEEecCCccccCccC
Q psy9003 840 LVVRNQHGHLLDRLSPWATYVTEPPV-VGHAYE--QRIWNPKPQDKHKWTSSKPK---KPDNLKIYESHVGICTQEQKCA 913 (1276)
Q Consensus 840 YrV~~~dG~~~~~~DPYAkav~~~~~-~s~v~~--~~~~~p~~~~~y~W~~~rp~---~~~d~vIYElHVr~ft~~~~~G 913 (1276)
|+|...+|....+.||||+++..++. .|++++ ...|+|. .|...+++ ..++++|||+|||+|++. |
T Consensus 82 y~v~~~~g~~~~~~DPYA~~~~~~~~~~s~v~d~~~~~w~~~-----~w~~~~~~~~~~~~~~~iYe~hv~~~~~~---g 153 (613)
T TIGR01515 82 YEIVTNNGEIRLKADPYAFYAEVRPNTASLVYDLEGYSWQDQ-----KWQEKRKAKTPYEKPVSIYELHLGSWRHG---L 153 (613)
T ss_pred EEEECCCCcEEEeCCCCEeeeccCCCCcEEEECCccCccCch-----hhhhcccccCcccCCceEEEEehhhccCC---C
Confidence 99987778877899999999887653 333333 1223332 56555432 235799999999999864 9
Q ss_pred cHHHHHHhhhhHHHHcCCCCCccceeecccccccccccccceeeccCccccccccccccCCCcccCCCcccccccccccc
Q psy9003 914 SYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAESHDQALVGDKTIAFWLMDKEM 993 (1276)
Q Consensus 914 tf~gl~ek~LdyLK~LGVna~d~wV~LmP~f~~eew~~~~pi~~l~~~Pi~E~~i~~~~S~~~~~WGYdp~nyf~~d~~~ 993 (1276)
+|+++++++|||||+||||+ |||||++ ++ + ...+|||++.+||
T Consensus 154 ~~~~i~~~l~dyl~~LGvt~----i~L~Pi~--------------------e~--~-----~~~~wGY~~~~y~------ 196 (613)
T TIGR01515 154 SYRELADQLIPYVKELGFTH----IELLPVA--------------------EH--P-----FDGSWGYQVTGYY------ 196 (613)
T ss_pred CHHHHHHHHHHHHHHcCCCE----EEECCcc--------------------cC--C-----CCCCCCCCcccCc------
Confidence 99999998669999999999 9999544 33 2 1246999999999
Q ss_pred ccccCCCCCCcccccccccccCCCCCccccccccccCCCCCCHHHHHHHHHHHHHcCCEEEEEEeccccCCcccCCCcCC
Q psy9003 994 YTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEF 1073 (1276)
Q Consensus 994 y~~~S~~~Dp~~~~dap~~~yas~s~hkYt~D~~~ID~~~Gt~eEfK~LV~alHk~GI~VILDvV~NHt~~~~~~~~~~f 1073 (1276)
+|+ ++||+++|||+||++||++||+||||+|+||++.+.. .+..|
T Consensus 197 ---------------~~~-------------------~~~Gt~~dlk~lV~~~H~~Gi~VilD~V~NH~~~~~~-~~~~~ 241 (613)
T TIGR01515 197 ---------------APT-------------------SRFGTPDDFMYFVDACHQAGIGVILDWVPGHFPKDDH-GLAEF 241 (613)
T ss_pred ---------------ccc-------------------cccCCHHHHHHHHHHHHHCCCEEEEEecccCcCCccc-hhhcc
Confidence 666 8899999999999999999999999999999998742 33455
Q ss_pred CCCCCcccccC-CCCCCCCCCCcCCCCCcHHHHHHHHHHHHHHHHhCCCcEEccCCccccccccCCCCCC-CCCCCcccc
Q psy9003 1074 DGTQACFFHDG-PRGTHPLWDSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEG-FSGHYDEYF 1151 (1276)
Q Consensus 1074 ~g~~~~Yy~~~-~~g~~~~W~g~~LN~~np~Vr~~Iidsl~~Wv~eygVDGFRfD~a~~L~~~d~g~g~~-~~~~~~~~~ 1151 (1276)
++. +.|+..+ ..+.++.|+.++||+++|+||++|+++++||++||||||||||++..|.+.+++..++ |. .+.+
T Consensus 242 ~~~-~~y~~~~~~~~~~~~w~~~~~~~~~~~Vr~~l~~~~~~W~~ey~iDG~R~D~v~~~~~~~~~~~~~~~~---~~~~ 317 (613)
T TIGR01515 242 DGT-PLYEHKDPRDGEHWDWGTLIFDYGRPEVRNFLVANALYWAEFYHIDGLRVDAVASMLYLDYSRDEGEWS---PNED 317 (613)
T ss_pred CCC-cceeccCCccCcCCCCCCceecCCCHHHHHHHHHHHHHHHHHhCCcEEEEcCHHHhhhhcccccccccc---cccc
Confidence 554 3344333 3455678998999999999999999999999999999999999998888777665543 32 1344
Q ss_pred CCCCCchHHHHHHHHHHHHHhhCCCeEEEEEccCCCCCCccccccCCcccCcccC-CC----------------------
Q psy9003 1152 GLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDYRLV-SL---------------------- 1208 (1276)
Q Consensus 1152 ~~~~d~~a~~Fl~el~~~Vr~~~PdvilIAE~~s~~p~~~~p~~~gglGFD~~~n-~l---------------------- 1208 (1276)
+++.+.+++.||+++++.||+.+|++++|||+++.+|.++.|...||+|||++|+ .+
T Consensus 318 ~~~~~~~~~~fl~~~~~~v~~~~p~~~liaE~~~~~~~~~~~~~~gg~gfd~~w~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (613)
T TIGR01515 318 GGRENLEAVDFLRKLNQTVYEAFPGVVTIAEESTEWPGVTRPTDEGGLGFHYKWNMGWMHDTLDYMSTDPVERQYHHQLI 397 (613)
T ss_pred CCcCChHHHHHHHHHHHHHHHHCCCeEEEEEeCCCCccccccccCCcCCcCeeeCchHHHHHHHHHhhChhhHhhccccc
Confidence 5566788999999999999999999999999999999999999999999999886 11
Q ss_pred ---------c---------c--------------------c------hh------------------------------h
Q psy9003 1209 ---------E---------G--------------------S------AL------------------------------S 1214 (1276)
Q Consensus 1209 ---------E---------e--------------------s------aL------------------------------S 1214 (1276)
+ + . ++ +
T Consensus 398 ~~~~~~~~~e~~~~~~sHD~~~~g~~~i~~~~~g~~~~~~~~~r~~~~~~~t~pG~plif~G~E~g~~~~~~~~~~l~W~ 477 (613)
T TIGR01515 398 TFSMLYAFSENFVLPLSHDEVVHGKKSLLNKMPGDYWQKFANYRALLGYMWAHPGKKLLFMGSEFAQGSEWNDTEQLDWH 477 (613)
T ss_pred cHHHHHHhhhccccCCCCCCcccCcccHHHhCCCchHHHHHHHHHHHHHHHhCCCCCEEEcchhcCcCCCCCCCccCCCc
Confidence 0 0 0 00 0
Q ss_pred ----------HHHHHHHHHHHHHhcccCCCC------CeeEeecCCCeEEEEEcC------cEEEEEeCCCCCCcccccc
Q psy9003 1215 ----------ALFDAAMNTTEERFKWLSADP------GYVSTKHEGDKVIIFERA------GLLFAFNFNGTQSFTDYRG 1272 (1276)
Q Consensus 1215 ----------~~F~~~Ln~l~~~~p~L~~~~------~~~l~nHD~~RVlsf~R~------~ll~v~N~~~~~s~~~y~~ 1272 (1276)
.+|.+.|++||++.|.|..+. .++..++..++|++|.|. .+++|+||++. ++.+|+|
T Consensus 478 ~~~~~~~~~l~~~~k~L~~Lr~~~paL~~~~~~~~~~~~~~~~~~~~~vlaf~R~~~~~~~~~~vv~N~~~~-~~~~Y~i 556 (613)
T TIGR01515 478 LLSFPMHQGVSVFVRDLNRTYQKSKALYEHDFDPQGFEWIDVDDDEQSVFSFIRRAKKHGEALVIICNFTPV-VRHQYRV 556 (613)
T ss_pred cccCcccHHHHHHHHHHHHHHhhCHHhhccCCCCCceEEEEcccCCCCEEEEEEecCCCCCeEEEEEeCCCC-CccceEe
Confidence 468999999999999986431 234444567789999994 49999999996 8899999
Q ss_pred ccCC
Q psy9003 1273 KSNC 1276 (1276)
Q Consensus 1273 ~~~~ 1276 (1276)
|+|.
T Consensus 557 ~~p~ 560 (613)
T TIGR01515 557 GVPQ 560 (613)
T ss_pred CCCC
Confidence 9863
|
A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here. |
| >PRK12313 glycogen branching enzyme; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-60 Score=581.46 Aligned_cols=420 Identities=26% Similarity=0.461 Sum_probs=330.2
Q ss_pred ccccCCCCCcccCeeecCceEEEEEccCCcEEEEEccCCCCccccccceecCCCeEEEEcCCCCCCCcccCcccEEEEEE
Q psy9003 763 CHKAGLFGTPEQLKYLVDECHKAGLLCFMHVVCAAGDFNNWNREEFAYKKLDFGKWELVLPPNPDGSCKLTHLSQVKLVV 842 (1276)
Q Consensus 763 Y~~~G~~Gtp~G~~y~~D~a~FalwAP~A~~VsLvGDFN~wd~~~~pM~r~~~GVWsl~Ip~~~~G~~~i~hGs~YkYrV 842 (1276)
|+.+|++.+..+- ..+++|++|||.|++|+|+||||+|++..++|.+...|+|++++|+... |..|+|++
T Consensus 24 ~~~lGah~~~~~~---~~gv~Frv~AP~A~~V~v~gdfn~w~~~~~~m~~~~~Gvw~~~i~~~~~-------g~~Y~y~v 93 (633)
T PRK12313 24 YEYLGAHLEEVDG---EKGTYFRVWAPNAQAVSVVGDFNDWRGNAHPLVRRESGVWEGFIPGAKE-------GQLYKYHI 93 (633)
T ss_pred hhcCCcEEeccCC---cccEEEEEECCCCCEEEEEEecCCCCcccccccccCCCEEEEEeCCCCC-------CCEEEEEE
Confidence 5555555443310 1278999999999999999999999988899998889999999997654 46999999
Q ss_pred EEeCCeeeeecCCcceEeecCCCCCccccceeeCCCCCCCCCcCCCC-----CC---CCCCceEEEEecCCccc--cCcc
Q psy9003 843 RNQHGHLLDRLSPWATYVTEPPVVGHAYEQRIWNPKPQDKHKWTSSK-----PK---KPDNLKIYESHVGICTQ--EQKC 912 (1276)
Q Consensus 843 ~~~dG~~~~~~DPYAkav~~~~~~s~v~~~~~~~p~~~~~y~W~~~r-----p~---~~~d~vIYElHVr~ft~--~~~~ 912 (1276)
...+|.+....||||+++...+.. .+.+++|. .|.|.... ++ ..++++|||+|||+|+. ++..
T Consensus 94 ~~~~g~~~~~~DPya~~~~~~~~~----~s~v~d~~---~~~w~~~~~~~~~~~~~~~~~~~~iYe~hv~~f~~~~~~~~ 166 (633)
T PRK12313 94 SRQDGYQVEKIDPFAFYFEARPGT----ASIVWDLP---EYKWKDGLWLARRKRWNALDRPISIYEVHLGSWKRNEDGRP 166 (633)
T ss_pred ECCCCeEEecCCCceEEEecCCCC----ceEECCCc---ccCCCChhhhhccccCCCCCCCceEEEEehhccccCCCCCc
Confidence 777888888999999998775432 23445553 46676542 21 22679999999999986 3567
Q ss_pred CcHHHHHHhhhhHHHHcCCCCCccceeecccccccccccccceeeccCccccccccccccCCCcccCCCccccccccccc
Q psy9003 913 ASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAESHDQALVGDKTIAFWLMDKE 992 (1276)
Q Consensus 913 Gtf~gl~ek~LdyLK~LGVna~d~wV~LmP~f~~eew~~~~pi~~l~~~Pi~E~~i~~~~S~~~~~WGYdp~nyf~~d~~ 992 (1276)
|+|+++++++|||||+||||+ |||||++ ++ +.. .+|||++.+||
T Consensus 167 g~~~~~~~~ll~yl~~LGv~~----i~L~Pi~--------------------~~--~~~-----~~~GY~~~~y~----- 210 (633)
T PRK12313 167 LSYRELADELIPYVKEMGYTH----VEFMPLM--------------------EH--PLD-----GSWGYQLTGYF----- 210 (633)
T ss_pred cCHHHHHHHHHHHHHHcCCCE----EEeCchh--------------------cC--CCC-----CCCCCCCcCcC-----
Confidence 999999998679999999999 9999544 43 222 35999999999
Q ss_pred cccccCCCCCCcccccccccccCCCCCccccccccccCCCCCCHHHHHHHHHHHHHcCCEEEEEEeccccCCcccCCCcC
Q psy9003 993 MYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNE 1072 (1276)
Q Consensus 993 ~y~~~S~~~Dp~~~~dap~~~yas~s~hkYt~D~~~ID~~~Gt~eEfK~LV~alHk~GI~VILDvV~NHt~~~~~~~~~~ 1072 (1276)
+|+ |+||++++||+||++||++||+||||+|+||++.++ +++..
T Consensus 211 ----------------~i~-------------------~~~Gt~~d~k~lv~~~H~~Gi~VilD~V~nH~~~~~-~~~~~ 254 (633)
T PRK12313 211 ----------------APT-------------------SRYGTPEDFMYLVDALHQNGIGVILDWVPGHFPKDD-DGLAY 254 (633)
T ss_pred ----------------cCC-------------------CCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCc-ccccc
Confidence 565 899999999999999999999999999999999874 33455
Q ss_pred CCCCCCcccccCCCCCCCCCCCcCCCCCcHHHHHHHHHHHHHHHHhCCCcEEccCCccccccccCCCCCCCCCCCccccC
Q psy9003 1073 FDGTQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFG 1152 (1276)
Q Consensus 1073 f~g~~~~Yy~~~~~g~~~~W~g~~LN~~np~Vr~~Iidsl~~Wv~eygVDGFRfD~a~~L~~~d~g~g~~~~~~~~~~~~ 1152 (1276)
|++...++|.....+.++.|++.+||+++|+||++|+++++||+++|||||||||++..|.+.+++....|.+ +.++
T Consensus 255 ~~~~~~~~~~~~~~~~~~~w~~~~~n~~~~~vr~~l~~~~~~W~~~~~iDG~R~D~~~~~~~~d~~~~~~~~~---~~~~ 331 (633)
T PRK12313 255 FDGTPLYEYQDPRRAENPDWGALNFDLGKNEVRSFLISSALFWLDEYHLDGLRVDAVSNMLYLDYDEEGEWTP---NKYG 331 (633)
T ss_pred cCCCcceeecCCCCCcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHhCCcEEEEcChhhhhhcccccccCcCC---cccC
Confidence 6664323333333455678999999999999999999999999999999999999998887766551112432 2344
Q ss_pred CCCCchHHHHHHHHHHHHHhhCCCeEEEEEccCCCCCCccccccCCcccCcccC-CC-----------------------
Q psy9003 1153 LNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDYRLV-SL----------------------- 1208 (1276)
Q Consensus 1153 ~~~d~~a~~Fl~el~~~Vr~~~PdvilIAE~~s~~p~~~~p~~~gglGFD~~~n-~l----------------------- 1208 (1276)
++.+.+++.||+++++.+|+.+|++++|||+++.+|.+++|...+|+|||++|+ .+
T Consensus 332 ~~~~~~~~~fl~~~~~~v~~~~p~~~liaE~~~~~~~~~~~~~~gg~gfd~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (633)
T PRK12313 332 GRENLEAIYFLQKLNEVVYLEHPDVLMIAEESTAWPKVTGPVEVGGLGFDYKWNMGWMNDTLRYFEEDPIYRKYHHNLLT 411 (633)
T ss_pred CCCCcHHHHHHHHHHHHHHHHCCCeEEEEECCCCCccccccccCCCCCcCceeCcHHHHHHHHHhhhCccccccccccch
Confidence 556678899999999999999999999999999999999999999999999986 11
Q ss_pred --------c---------c--------------------ch------h--h-----------------------------
Q psy9003 1209 --------E---------G--------------------SA------L--S----------------------------- 1214 (1276)
Q Consensus 1209 --------E---------e--------------------sa------L--S----------------------------- 1214 (1276)
+ + +. + +
T Consensus 412 ~~~~~~~~e~~~l~~sHD~~~~g~~~~~~~~~g~~~~~~~~~r~~~~~~~t~pG~Plif~G~E~g~~~~~~~~~~l~W~~ 491 (633)
T PRK12313 412 FSFMYAFSENFVLPFSHDEVVHGKKSLMHKMPGDRWQQFANLRLLYTYMITHPGKKLLFMGSEFGQFLEWKHDESLEWHL 491 (633)
T ss_pred HHHhhhhhcccccCCCCcccccCCccHHHhcCCCHHHHHHHHHHHHHHHHhCCCCcEeecccccccCccCCccCCCCccc
Confidence 0 0 00 0 0
Q ss_pred ---------HHHHHHHHHHHHHhcccCCC----C--CeeEeecCCCeEEEEEcCc------EEEEEeCCCCCCccccccc
Q psy9003 1215 ---------ALFDAAMNTTEERFKWLSAD----P--GYVSTKHEGDKVIIFERAG------LLFAFNFNGTQSFTDYRGK 1273 (1276)
Q Consensus 1215 ---------~~F~~~Ln~l~~~~p~L~~~----~--~~~l~nHD~~RVlsf~R~~------ll~v~N~~~~~s~~~y~~~ 1273 (1276)
.+|.+.|+++|+++|+|+.+ . .++..++..++|++|.|.. ++||+||++. .+++|+|+
T Consensus 492 ~~~~~~~~l~~~~r~Li~LRr~~paL~~~d~~~~~~~~l~~~~~~~~vlaf~R~~~~~~~~llvv~N~s~~-~~~~y~i~ 570 (633)
T PRK12313 492 LEDPMNAGMQRFTSDLNQLYKDEPALWELDFSPDGFEWIDADDADQSVLSFIRKGKNKGDFLVVVFNFTPV-EREDYRIG 570 (633)
T ss_pred cCChhHHHHHHHHHHHHHHHHhChHhhcccCCCCCcEEEECcCCCCCEEEEEEeCCCCCceEEEEEeCCCC-cccceeEC
Confidence 45899999999999999732 2 2333344467899999965 9999999986 68899999
Q ss_pred cC
Q psy9003 1274 SN 1275 (1276)
Q Consensus 1274 ~~ 1275 (1276)
+|
T Consensus 571 ~p 572 (633)
T PRK12313 571 VP 572 (633)
T ss_pred CC
Confidence 86
|
|
| >PRK05402 glycogen branching enzyme; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-59 Score=582.46 Aligned_cols=427 Identities=28% Similarity=0.497 Sum_probs=337.8
Q ss_pred hhhhhHhh-----ccccCCCCCcccCeeecCceEEEEEccCCcEEEEEccCCCCccccccceec-CCCeEEEEcCCCCCC
Q psy9003 755 QLKYLVDE-----CHKAGLFGTPEQLKYLVDECHKAGLLCFMHVVCAAGDFNNWNREEFAYKKL-DFGKWELVLPPNPDG 828 (1276)
Q Consensus 755 ~l~~F~~~-----Y~~~G~~Gtp~G~~y~~D~a~FalwAP~A~~VsLvGDFN~wd~~~~pM~r~-~~GVWsl~Ip~~~~G 828 (1276)
-+..|..+ |+.+|++.++.. ..++++|++|||.|++|+|+||||+|++..++|.+. ..|+|++++|+...
T Consensus 104 ~~~~~~~g~~~~~~~~LGah~~~~~---~~~gv~FrvwAP~A~~V~l~gdfn~w~~~~~~m~~~~~~Gvw~~~i~~~~~- 179 (726)
T PRK05402 104 DLYLFGEGTHLRLYETLGAHPVTVD---GVSGVRFAVWAPNARRVSVVGDFNGWDGRRHPMRLRGESGVWELFIPGLGE- 179 (726)
T ss_pred HHHHHhCCccchhhhccccEEeccC---CCCcEEEEEECCCCCEEEEEEEcCCCCCccccceEcCCCCEEEEEeCCCCC-
Confidence 34455444 556666544321 136789999999999999999999999888999987 78999999997655
Q ss_pred CcccCcccEEEEEEEEeCCeeeeecCCcceEeecCCCCCccccceeeCCCCCCCCCcCCC-----CC---CCCCCceEEE
Q psy9003 829 SCKLTHLSQVKLVVRNQHGHLLDRLSPWATYVTEPPVVGHAYEQRIWNPKPQDKHKWTSS-----KP---KKPDNLKIYE 900 (1276)
Q Consensus 829 ~~~i~hGs~YkYrV~~~dG~~~~~~DPYAkav~~~~~~s~v~~~~~~~p~~~~~y~W~~~-----rp---~~~~d~vIYE 900 (1276)
|..|+|++...+|.+....||||+++..++.. .+.++++. .|+|..+ ++ +.+++++|||
T Consensus 180 ------g~~Y~y~v~~~~g~~~~~~DPYa~~~~~~~~~----~s~v~d~~---~~~w~~~~~~~~~~~~~~~~~~~~iYe 246 (726)
T PRK05402 180 ------GELYKFEILTADGELLLKADPYAFAAEVRPAT----ASIVADLS---QYQWNDAAWMEKRAKRNPLDAPISIYE 246 (726)
T ss_pred ------CCEEEEEEeCCCCcEeecCCCceEEEecCCCC----cEEEeCCc---cCCCCCcchhhcccccCcccCCcEEEE
Confidence 46999999877788888999999999886542 13344443 4666654 22 2347899999
Q ss_pred EecCCccc---cCccCcHHHHHHhhhhHHHHcCCCCCccceeecccccccccccccceeeccCccccccccccccCCCcc
Q psy9003 901 SHVGICTQ---EQKCASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAESHDQA 977 (1276)
Q Consensus 901 lHVr~ft~---~~~~Gtf~gl~ek~LdyLK~LGVna~d~wV~LmP~f~~eew~~~~pi~~l~~~Pi~E~~i~~~~S~~~~ 977 (1276)
+|||+|+. .+..|+|+++++++|||||+||||+ |||||++ ++ +.. .
T Consensus 247 ~hv~~f~~~~~~~~~g~~~~i~~~l~~ylk~LGv~~----i~L~Pi~--------------------e~--~~~-----~ 295 (726)
T PRK05402 247 VHLGSWRRHEDGGRFLSYRELADQLIPYVKEMGFTH----VELLPIA--------------------EH--PFD-----G 295 (726)
T ss_pred EehhhhccCCCCCcccCHHHHHHHHHHHHHHcCCCE----EEECCcc--------------------cC--CCC-----C
Confidence 99999984 4567999999998669999999999 9999544 43 222 3
Q ss_pred cCCCccccccccccccccccCCCCCCcccccccccccCCCCCccccccccccCCCCCCHHHHHHHHHHHHHcCCEEEEEE
Q psy9003 978 LVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDV 1057 (1276)
Q Consensus 978 ~WGYdp~nyf~~d~~~y~~~S~~~Dp~~~~dap~~~yas~s~hkYt~D~~~ID~~~Gt~eEfK~LV~alHk~GI~VILDv 1057 (1276)
+|||++.+|| +|+ |+||+++|||+||++||++||+||||+
T Consensus 296 ~~GY~~~~y~---------------------ai~-------------------~~~Gt~~dfk~lV~~~H~~Gi~VilD~ 335 (726)
T PRK05402 296 SWGYQPTGYY---------------------APT-------------------SRFGTPDDFRYFVDACHQAGIGVILDW 335 (726)
T ss_pred CCCCCcccCC---------------------CcC-------------------cccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 5999999999 666 899999999999999999999999999
Q ss_pred eccccCCcccCCCcCCCCCCCcccc-cCCCCCCCCCCCcCCCCCcHHHHHHHHHHHHHHHHhCCCcEEccCCcccccccc
Q psy9003 1058 VHSHASKNVLDGLNEFDGTQACFFH-DGPRGTHPLWDSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHN 1136 (1276)
Q Consensus 1058 V~NHt~~~~~~~~~~f~g~~~~Yy~-~~~~g~~~~W~g~~LN~~np~Vr~~Iidsl~~Wv~eygVDGFRfD~a~~L~~~d 1136 (1276)
|+||++.++ +++..|++.. .|+. ....+.++.|++..||+++|+||++|+++++||++||||||||||++..|.+.+
T Consensus 336 V~NH~~~~~-~~~~~~~~~~-~y~~~~~~~~~~~~w~~~~~n~~~~~v~~~l~~~~~~W~~e~~iDG~R~D~v~~~~~~~ 413 (726)
T PRK05402 336 VPAHFPKDA-HGLARFDGTA-LYEHADPREGEHPDWGTLIFNYGRNEVRNFLVANALYWLEEFHIDGLRVDAVASMLYLD 413 (726)
T ss_pred CCCCCCCCc-cchhccCCCc-ceeccCCcCCccCCCCCccccCCCHHHHHHHHHHHHHHHHHhCCcEEEECCHHHhhhcc
Confidence 999998764 3455666653 3433 333466789999899999999999999999999999999999999998888777
Q ss_pred CCCCCC-CCCCCccccCCCCCchHHHHHHHHHHHHHhhCCCeEEEEEccCCCCCCccccccCCcccCcccC-CC------
Q psy9003 1137 HGCGEG-FSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDYRLV-SL------ 1208 (1276)
Q Consensus 1137 ~g~g~~-~~~~~~~~~~~~~d~~a~~Fl~el~~~Vr~~~PdvilIAE~~s~~p~~~~p~~~gglGFD~~~n-~l------ 1208 (1276)
++..++ |. .+.++++.+.+++.||+++++.+|+.+|++++|||+++.+|.+++|...+|+|||++|| .+
T Consensus 414 ~~~~~g~~~---~~~~~~~~~~~~~~fl~~~~~~~~~~~p~~~liaE~~~~~~~~~~~~~~~G~gfd~~wn~~~~~~~l~ 490 (726)
T PRK05402 414 YSRKEGEWI---PNIYGGRENLEAIDFLRELNAVVHEEFPGALTIAEESTAWPGVTRPTEEGGLGFGYKWNMGWMHDTLD 490 (726)
T ss_pred ccccccccc---cccccCcCCHHHHHHHHHHHHHHHHHCCCeEEEEECCCCCcCccccccCCCCCCCceecCCcchHHHH
Confidence 665443 22 23455667778899999999999999999999999999999999998889999999876 11
Q ss_pred -------------------------c---------c------c--------------------hh--h------------
Q psy9003 1209 -------------------------E---------G------S--------------------AL--S------------ 1214 (1276)
Q Consensus 1209 -------------------------E---------e------s--------------------aL--S------------ 1214 (1276)
+ + + ++ +
T Consensus 491 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~sHD~~~~g~~~l~~~~~g~~~~~~~~lrl~~~~~~t~pG~Plif~G~E 570 (726)
T PRK05402 491 YMERDPIYRKYHHNELTFSLLYAYSENFVLPLSHDEVVHGKGSLLGKMPGDDWQKFANLRAYYGYMWAHPGKKLLFMGGE 570 (726)
T ss_pred HHhhCcccccccccchhHHHhHhhhccccCCCCCceeeeCcccHHhhCCCCHHHHHHHHHHHHHHHHHCCCcCEeeCchh
Confidence 0 0 0 00 0
Q ss_pred --------------------------HHHHHHHHHHHHHhcccCCCC------CeeEeecCCCeEEEEEcC------cEE
Q psy9003 1215 --------------------------ALFDAAMNTTEERFKWLSADP------GYVSTKHEGDKVIIFERA------GLL 1256 (1276)
Q Consensus 1215 --------------------------~~F~~~Ln~l~~~~p~L~~~~------~~~l~nHD~~RVlsf~R~------~ll 1256 (1276)
.+|.+.|+++|+++|+|+.+. .++..++..++|++|.|. .++
T Consensus 571 ~g~~~~~~~~~~l~W~~~~~~~~~~l~~~~k~Li~Lr~~~~aL~~g~~~~~~~~~~~~~~~~~~vlaf~R~~~~~~~~vl 650 (726)
T PRK05402 571 FGQGREWNHDASLDWHLLDFPWHRGVQRLVRDLNHLYRAEPALHELDFDPEGFEWIDADDAENSVLSFLRRGKDDGEPLL 650 (726)
T ss_pred cCCCCCCCccCcCCccccCCcchHHHHHHHHHHHHHHHhChhhhccccCcCCeeEEecccCCCCEEEEEEecCCCCCeEE
Confidence 568899999999999996431 233345557789999994 399
Q ss_pred EEEeCCCCCCccccccccC
Q psy9003 1257 FAFNFNGTQSFTDYRGKSN 1275 (1276)
Q Consensus 1257 ~v~N~~~~~s~~~y~~~~~ 1275 (1276)
||+||++. .+++|+|++|
T Consensus 651 vv~N~~~~-~~~~y~i~~p 668 (726)
T PRK05402 651 VVCNFTPV-PRHDYRLGVP 668 (726)
T ss_pred EEEeCCCC-cccceEECCC
Confidence 99999985 7889999987
|
|
| >PLN03244 alpha-amylase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-58 Score=556.46 Aligned_cols=415 Identities=37% Similarity=0.692 Sum_probs=364.3
Q ss_pred ChhhhhhhHhhccccCCCCCcccCeeecCceEEEEEccCCcEEEEEccCCCCcccccc-----ceecCCCeEEEEcCCC-
Q psy9003 752 TPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLLCFMHVVCAAGDFNNWNREEFA-----YKKLDFGKWELVLPPN- 825 (1276)
Q Consensus 752 ~~e~l~~F~~~Y~~~G~~Gtp~G~~y~~D~a~FalwAP~A~~VsLvGDFN~wd~~~~p-----M~r~~~GVWsl~Ip~~- 825 (1276)
....++.|+.+|+.+|.+-+|.. ++.|+-|||.|.-++|+||||+|+++.++ |-+++.|+|++.++..
T Consensus 109 ~~~~~~~~~~~~e~~g~~r~~~~------~~~~~ewapga~~~~~~gdfn~w~~~~~~~r~~~~~~~~~g~~~~~~~~~~ 182 (872)
T PLN03244 109 RHFDFQDFASGFEILGMHRHMEH------RVDFMDWAPGARYCAIIGDFNGWSPTENAAREGHFGHDDYGYWFIILEDKL 182 (872)
T ss_pred hhccHHHhhhhhhhhccccCccc------CceeEeecCCcceeeeeccccCCCccccccccccccccccceEEEEechhh
Confidence 34567899999999999988863 24677999999999999999999987665 6678899999998742
Q ss_pred CCCC----------------------------------------------------------------------------
Q psy9003 826 PDGS---------------------------------------------------------------------------- 829 (1276)
Q Consensus 826 ~~G~---------------------------------------------------------------------------- 829 (1276)
.+|+
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (872)
T PLN03244 183 REGEEPDELYFQQYNYVDDNDKGDSGVSAEEIFKKANDEYWEPGEDRFIKNRFEVAAKLYEQIFGPNGPETEEELEDIPD 262 (872)
T ss_pred hcCCCchhhhHhhhccccccccCcCCCCHHHHHHHhhhhhcCCchhhHHHhHHHHHHHHHHHhhCCCCccchhhhccCcc
Confidence 2221
Q ss_pred --------------------------------------------------------------------------cccCcc
Q psy9003 830 --------------------------------------------------------------------------CKLTHL 835 (1276)
Q Consensus 830 --------------------------------------------------------------------------~~i~hG 835 (1276)
++|+||
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~i~H~ 342 (872)
T PLN03244 263 AETRYKAWKEEHKDDPPSNLPPCDIIDKGQGKEYDIFNVVDDPEWREKFRAKEPPIAYWLESRKGRKAWLKKYIPAIPHG 342 (872)
T ss_pred hHHHHHhhhhhcccCChhcCCCeEeeecCCCcccceeeeccCHHHHHHhhccCCChhhHHHhhcccCceeecccCCCCCC
Confidence 234499
Q ss_pred cEEEEEEEEeCCeeeeecCCcceEeecCCCCCccccceeeCCCCCCCCCcCCCCCCCCCCceEEEEecCCccccCccCcH
Q psy9003 836 SQVKLVVRNQHGHLLDRLSPWATYVTEPPVVGHAYEQRIWNPKPQDKHKWTSSKPKKPDNLKIYESHVGICTQEQKCASY 915 (1276)
Q Consensus 836 s~YkYrV~~~dG~~~~~~DPYAkav~~~~~~s~v~~~~~~~p~~~~~y~W~~~rp~~~~d~vIYElHVr~ft~~~~~Gtf 915 (1276)
+.|++++..++|. .+++.+|++++..+.. +..++..+|+|+..+.|.|+..+|+.|..+.|||+||+..+++++.|||
T Consensus 343 s~~k~~~~~~~g~-~~RiPaw~~~~~~~~~-~~~~~~~~w~P~~~~~y~~k~~~p~~p~~lrIYE~HvGms~~e~kv~ty 420 (872)
T PLN03244 343 SKYRLYFNTPDGP-LERIPAWATYVLPDDD-GKQAFAIHWEPPPEAAHKWKNMKPKVPESLRIYECHVGISGSEPKISSF 420 (872)
T ss_pred CeEEEEEEcCCCC-cccCCCCeeeEEecCC-CCceeeeEeCCCcccCCccCCCCCCCCCCceEEEEEeeecCCCCCcccH
Confidence 9999999888888 7899999999988764 4478888999987667999999998889999999999999999999999
Q ss_pred HHHHHhhhhHHHHcCCCCCccceeecccccccccccccceeeccCccccccccccccCCCcccCCCcccccccccccccc
Q psy9003 916 EDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAESHDQALVGDKTIAFWLMDKEMYT 995 (1276)
Q Consensus 916 ~gl~ek~LdyLK~LGVna~d~wV~LmP~f~~eew~~~~pi~~l~~~Pi~E~~i~~~~S~~~~~WGYdp~nyf~~d~~~y~ 995 (1276)
+.+++. + .+||
T Consensus 421 ~eF~~~---------v----------------------------------------------------t~fF-------- 431 (872)
T PLN03244 421 EEFTEK---------V----------------------------------------------------TNFF-------- 431 (872)
T ss_pred HHHhhc---------c----------------------------------------------------Cccc--------
Confidence 999874 1 1366
Q ss_pred ccCCCCCCcccccccccccCCCCCccccccccccCCCCCCHHHHHHHHHHHHHcCCEEEEEEeccccCCcccCCCcCCCC
Q psy9003 996 HMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDG 1075 (1276)
Q Consensus 996 ~~S~~~Dp~~~~dap~~~yas~s~hkYt~D~~~ID~~~Gt~eEfK~LV~alHk~GI~VILDvV~NHt~~~~~~~~~~f~g 1075 (1276)
||+ ++||+++|||+||++||++||+||||||+||++.+...++..|+|
T Consensus 432 -------------Aps-------------------sRYGTPeDLK~LVD~aH~~GI~VILDvV~NH~~~d~~~GL~~fDG 479 (872)
T PLN03244 432 -------------AAS-------------------SRYGTPDDFKRLVDEAHGLGLLVFLDIVHSYAAADEMVGLSLFDG 479 (872)
T ss_pred -------------ccC-------------------cccCCHHHHHHHHHHHHHCCCEEEEEecCccCCCccccchhhcCC
Confidence 666 899999999999999999999999999999999987778889999
Q ss_pred CCCcccccCCCCCCCCCCCcCCCCCcHHHHHHHHHHHHHHHHhCCCcEEccCCccccccccCCCCCCCCCCCccccCCCC
Q psy9003 1076 TQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNV 1155 (1276)
Q Consensus 1076 ~~~~Yy~~~~~g~~~~W~g~~LN~~np~Vr~~Iidsl~~Wv~eygVDGFRfD~a~~L~~~d~g~g~~~~~~~~~~~~~~~ 1155 (1276)
....||+.++.|.++.|+++.+|+.+|+||+||+++++||++||||||||||++..|.|.++|. .+|.+++..+++...
T Consensus 480 t~~~Yf~~~~~g~~~~WGs~~fnyg~~EVr~FLLsna~yWleEyhIDGFRfDaVtSMLY~d~G~-~~f~g~~~~y~n~~~ 558 (872)
T PLN03244 480 SNDCYFHTGKRGHHKHWGTRMFKYGDLDVLHFLISNLNWWITEYQIDGFQFHSLASMIYTHNGF-ASFNGDLDDYCNQYV 558 (872)
T ss_pred CccceeccCCCCccCCCCCceecCCCHHHHHHHHHHHHHHHHHhCcCcceeecchhheeecccc-ccccCCccccccccC
Confidence 8778888777788899999999999999999999999999999999999999999999999987 677777777777788
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEEccCCCCCCccccccCCcccCcccC-CC-------------c------------
Q psy9003 1156 DTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDYRLV-SL-------------E------------ 1209 (1276)
Q Consensus 1156 d~~a~~Fl~el~~~Vr~~~PdvilIAE~~s~~p~~~~p~~~gglGFD~~~n-~l-------------E------------ 1209 (1276)
|.+++.||+.+++.+++.+|++++|||+++++|.+|+|+..||+||||+|+ .+ +
T Consensus 559 d~dAv~fL~laN~~ih~~~P~~itIAEDsS~~P~vt~Pv~~GGLGFDYKWnMgwmdd~lkylk~~pderw~~~~ItfsL~ 638 (872)
T PLN03244 559 DKDALMYLILANEILHALHPKIITIAEDATYYPGLCEPTSQGGLGFDYYVNLSAPDMWLDFLDNIPDHEWSMSKIVSTLI 638 (872)
T ss_pred CchHHHHHHHHHHHHHHhCCCeEEEEEcCCCCcCccccCCCCCCCccceecCcchHHHHHHHHhCCCcccCHHHHhhhhh
Confidence 999999999999999999999999999999999999999999999999988 42 0
Q ss_pred -------------cc----------------------------h------h-----------------------------
Q psy9003 1210 -------------GS----------------------------A------L----------------------------- 1213 (1276)
Q Consensus 1210 -------------es----------------------------a------L----------------------------- 1213 (1276)
|+ . |
T Consensus 639 ~nrr~~ek~~aYsESHDqaLvGdKTlaf~l~d~~~y~~~~~~~vv~Rg~aLhKMiRllt~~~~G~kkLnFMGNEFGhpe~ 718 (872)
T PLN03244 639 ANKEYADKMLSYAENHNQSISGGRSFAEILFGAIDEDPLGGKELLDRGCSLHKMIRLITFTIGGHAYLNFMGNEFGHPER 718 (872)
T ss_pred cccCCcceEEEEecccceeccccchHHhhhcccccccccccchhhhhhhHHHHHHHHHHHHccCccceeecccccCCchh
Confidence 00 0 0
Q ss_pred ----------h-------------------HHHHHHHHHHHHHhcccCCCCCeeEeecCCCeEEEEEcCcEEEEEeCCCC
Q psy9003 1214 ----------S-------------------ALFDAAMNTTEERFKWLSADPGYVSTKHEGDKVIIFERAGLLFAFNFNGT 1264 (1276)
Q Consensus 1214 ----------S-------------------~~F~~~Ln~l~~~~p~L~~~~~~~l~nHD~~RVlsf~R~~ll~v~N~~~~ 1264 (1276)
| ..|+++|++++++.|+|.++..|+...|+.++|++|+|++++|||||+|+
T Consensus 719 ~dfPr~gN~~s~~~arrdW~Lld~~~hk~L~~FdrdLn~Ly~~~~aL~~gf~wI~~~d~e~kVIAF~R~~LLfVfNF~P~ 798 (872)
T PLN03244 719 IEFPMPSNNFSFSLANRCWDLLENEVHHHLFSFDKDLMDLDENEGILSRGLPNIHHVKDAAMVISFMRGPFLFIFNFHPS 798 (872)
T ss_pred eeccccCCCccccccccCccccCChhHHHHHHHHHHHHHHHhcCcccccCCcEEeeecCCCCEEEEEecCEEEEEeCCCC
Confidence 0 45889999999999999988889999999999999999999999999999
Q ss_pred CCccccccccCC
Q psy9003 1265 QSFTDYRGKSNC 1276 (1276)
Q Consensus 1265 ~s~~~y~~~~~~ 1276 (1276)
+|+++|+||||.
T Consensus 799 ~sy~dYrIGVp~ 810 (872)
T PLN03244 799 NSYEGYDVGVEE 810 (872)
T ss_pred CCccCCEECCCC
Confidence 999999999984
|
|
| >COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-58 Score=553.73 Aligned_cols=353 Identities=30% Similarity=0.496 Sum_probs=298.8
Q ss_pred HhhccccCCCCCcccCeeecCceEEEEEccCCcEEEEEccCCCCcccccccee-cCCCeEEEEcCCCCCCCcccCcccEE
Q psy9003 760 VDECHKAGLFGTPEQLKYLVDECHKAGLLCFMHVVCAAGDFNNWNREEFAYKK-LDFGKWELVLPPNPDGSCKLTHLSQV 838 (1276)
Q Consensus 760 ~~~Y~~~G~~Gtp~G~~y~~D~a~FalwAP~A~~VsLvGDFN~wd~~~~pM~r-~~~GVWsl~Ip~~~~G~~~i~hGs~Y 838 (1276)
..-|+.+|++..+.| +.+++|++|||+|++|+|+||||+|+....+|.. .+.|+|++++|+..+| ..|
T Consensus 20 ~~~~~~~GA~~~~~g----~~~~~F~vWAP~a~~V~vvgdfn~w~~~~~~~~~~~~~G~we~~vp~~~~G-------~~Y 88 (628)
T COG0296 20 LRLYEKLGAHPIENG----VSGVRFRVWAPNARRVSLVGDFNDWDGRRMPMRDRKESGIWELFVPGAPPG-------TRY 88 (628)
T ss_pred hhhHhhhCcccccCC----CCceEEEEECCCCCeEEEEeecCCccceecccccCCCCceEEEeccCCCCC-------CeE
Confidence 345778888887775 6789999999999999999999999988888864 3779999999987765 699
Q ss_pred EEEEEEeCCeeeeecCCcceEeecCCCCCccccceeeCCCCCCCCCcCC----CCC--CCCCCceEEEEecCCccccCcc
Q psy9003 839 KLVVRNQHGHLLDRLSPWATYVTEPPVVGHAYEQRIWNPKPQDKHKWTS----SKP--KKPDNLKIYESHVGICTQEQKC 912 (1276)
Q Consensus 839 kYrV~~~dG~~~~~~DPYAkav~~~~~~s~v~~~~~~~p~~~~~y~W~~----~rp--~~~~d~vIYElHVr~ft~~~~~ 912 (1276)
||++.+.+|....+.||||++....+.. .+.++++. +|.|++ .++ +.+++++|||+||++|+++...
T Consensus 89 ky~l~~~~g~~~~~~DP~a~~~~~~p~~----aS~v~~~~---~y~W~d~~~~~~~~~~~~e~~vIYElHvGs~~~~~~~ 161 (628)
T COG0296 89 KYELIDPSGQLRLKADPYARRQEVGPHT----ASQVVDLP---DYEWQDERWDRAWRGRFWEPIVIYELHVGSFTPDRFL 161 (628)
T ss_pred EEEEeCCCCceeeccCchhhccCCCCCC----cceecCCC---CcccccccccccccCCCCCCceEEEEEeeeccCCCCc
Confidence 9999999998889999999998765531 23334432 366663 222 3457999999999999986223
Q ss_pred CcHHHHHHhhhhHHHHcCCCCCccceeecccccccccccccceeeccCccccccccccccCCCcccCCCccccccccccc
Q psy9003 913 ASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAESHDQALVGDKTIAFWLMDKE 992 (1276)
Q Consensus 913 Gtf~gl~ek~LdyLK~LGVna~d~wV~LmP~f~~eew~~~~pi~~l~~~Pi~E~~i~~~~S~~~~~WGYdp~nyf~~d~~ 992 (1276)
|+|...++ +|||||+||||| |+|| |+.|+ |+.+| |||+++.||
T Consensus 162 ~~~e~a~~-llpYl~elG~T~----IELM--------------------Pv~e~--p~~~s-----WGYq~~g~y----- 204 (628)
T COG0296 162 GYFELAIE-LLPYLKELGITH----IELM--------------------PVAEH--PGDRS-----WGYQGTGYY----- 204 (628)
T ss_pred CHHHHHHH-HhHHHHHhCCCE----EEEc--------------------ccccC--CCCCC-----CCCCcceec-----
Confidence 55555555 699999999999 9999 77887 77777 999999999
Q ss_pred cccccCCCCCCcccccccccccCCCCCccccccccccCCCCCCHHHHHHHHHHHHHcCCEEEEEEeccccCCcccCCCcC
Q psy9003 993 MYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNE 1072 (1276)
Q Consensus 993 ~y~~~S~~~Dp~~~~dap~~~yas~s~hkYt~D~~~ID~~~Gt~eEfK~LV~alHk~GI~VILDvV~NHt~~~~~~~~~~ 1072 (1276)
||+ ++||++++||+||++||++||.||||+||||++.+ ..++..
T Consensus 205 ----------------Ap~-------------------sryGtPedfk~fVD~aH~~GIgViLD~V~~HF~~d-~~~L~~ 248 (628)
T COG0296 205 ----------------APT-------------------SRYGTPEDFKALVDAAHQAGIGVILDWVPNHFPPD-GNYLAR 248 (628)
T ss_pred ----------------ccc-------------------ccCCCHHHHHHHHHHHHHcCCEEEEEecCCcCCCC-cchhhh
Confidence 777 89999999999999999999999999999999996 456778
Q ss_pred CCCCCCcccccCCCCCCCCCCCcCCCCCcHHHHHHHHHHHHHHHHhCCCcEEccCCccccccccCCCCCC-CCCCCcccc
Q psy9003 1073 FDGTQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEG-FSGHYDEYF 1151 (1276)
Q Consensus 1073 f~g~~~~Yy~~~~~g~~~~W~g~~LN~~np~Vr~~Iidsl~~Wv~eygVDGFRfD~a~~L~~~d~g~g~~-~~~~~~~~~ 1151 (1276)
|++..-+.+.+...|.++.|+...+|+.+++||+||+++++||+++|||||||+|++..|.+.|+.+..+ | ..+..
T Consensus 249 fdg~~~~e~~~~~~~~~~~Wg~~i~~~gr~EVR~Fll~nal~Wl~~yHiDGlRvDAV~smly~d~~~~~~~~---~~n~~ 325 (628)
T COG0296 249 FDGTFLYEHEDPRRGEHTDWGTAIFNYGRNEVRNFLLANALYWLEEYHIDGLRVDAVASMLYLDYSRAEGEW---VPNEY 325 (628)
T ss_pred cCCccccccCCcccccCCCcccchhccCcHHHHHHHHHHHHHHHHHhCCcceeeehhhhhhccchhhhhhcc---ccccc
Confidence 8887655555555788999999999999999999999999999999999999999999999887654432 2 13455
Q ss_pred CCCCCchHHHHHHHHHHHHHhhCCCeEEEEEccCCCCCCccccccCCcccCcccC
Q psy9003 1152 GLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDYRLV 1206 (1276)
Q Consensus 1152 ~~~~d~~a~~Fl~el~~~Vr~~~PdvilIAE~~s~~p~~~~p~~~gglGFD~~~n 1206 (1276)
|++.+.++++|++.+++.|+...|++++|+|+|+++|.++.|...+|+||+|+||
T Consensus 326 ggr~n~~a~efl~~~n~~i~~~~pg~~~iaeestd~~~~t~~~~~gG~gf~yk~n 380 (628)
T COG0296 326 GGRENLEAAEFLRNLNSLIHEEEPGAMTIAEESTDDPHVTLPVAIGGLGFGYKWN 380 (628)
T ss_pred CCcccHHHHHHhhhhhhhhcccCCCceeeeeeccCCCCceeeecccccchhhhhh
Confidence 6778899999999999999999999999999999999999999999999999998
|
|
| >TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-54 Score=536.68 Aligned_cols=352 Identities=15% Similarity=0.151 Sum_probs=261.9
Q ss_pred hhHhhccccCCCCCcccCeeecCceEEEEEccCCcEEEEEccCCCC-ccccccceec-CCCeEEEEcCCCCCCCcccCcc
Q psy9003 758 YLVDECHKAGLFGTPEQLKYLVDECHKAGLLCFMHVVCAAGDFNNW-NREEFAYKKL-DFGKWELVLPPNPDGSCKLTHL 835 (1276)
Q Consensus 758 ~F~~~Y~~~G~~Gtp~G~~y~~D~a~FalwAP~A~~VsLvGDFN~w-d~~~~pM~r~-~~GVWsl~Ip~~~~G~~~i~hG 835 (1276)
.|++.|.+-| ...++|++|..++++|+||||+|++|+|+...+++ ....++|.+. ..|+|++++++...|
T Consensus 114 ~lD~~y~y~~-~~~~LGa~~~~~gv~FrVWAPtA~~V~L~Ly~~~~~~~~~~~M~~~~~~GVWsv~v~g~~~G------- 185 (898)
T TIGR02103 114 VLDALYAYAG-PALSLGATLTDSGVTFRLWAPTAQQVKLHIYSASKKVETTLPMTRDSTSGVWSAEGGSSWKG------- 185 (898)
T ss_pred hhhHHhhcCC-CCCCCCcEEeCCcEEEEEECCCCCEEEEEEEcCCCCccceEeCccCCCCCEEEEEECcCCCC-------
Confidence 4455555422 22358999999999999999999999999433333 3467899886 689999999987665
Q ss_pred cEEEEEEEEe---CCe--eeeecCCcceEeecCCCCCccccce--eeCCCCCCCCCcCCCC---CC--CCCCceEEEEec
Q psy9003 836 SQVKLVVRNQ---HGH--LLDRLSPWATYVTEPPVVGHAYEQR--IWNPKPQDKHKWTSSK---PK--KPDNLKIYESHV 903 (1276)
Q Consensus 836 s~YkYrV~~~---dG~--~~~~~DPYAkav~~~~~~s~v~~~~--~~~p~~~~~y~W~~~r---p~--~~~d~vIYElHV 903 (1276)
.+|+|+|+.. .|. ...++||||++++.++.+|.+++.. .|.| .+|...+ |+ .+++++|||+||
T Consensus 186 ~~Y~Y~V~v~~p~~G~v~~~~v~DPYA~als~n~~~S~VvDl~~~~~~p-----~~W~~~~~p~p~~~~~~d~iIYElHV 260 (898)
T TIGR02103 186 AYYRYEVTVYHPSTGKVETYLVTDPYSVSLSANSEYSQVVDLNDPALKP-----EGWDALAMPKPQLASFADMVLYELHI 260 (898)
T ss_pred CEeEEEEEEecCCCCeECCeEEeCcCcceEcCCCCCeEEeCCccccCCC-----cchhhcccccCCcCCCcccEEEEEec
Confidence 6999999852 253 4578999999999888888776632 2344 3898754 32 568999999999
Q ss_pred CCccc------cCccCcHHHHHHh---h---hhHHHHcCCCCCccceeeccccccccccccc-----c---eeeccCc-c
Q psy9003 904 GICTQ------EQKCASYEDFVRV---V---IPRIVKQGMAIPDKWIELLKKFKDEDWNMGN-----I---VHTLTNR-R 962 (1276)
Q Consensus 904 r~ft~------~~~~Gtf~gl~ek---~---LdyLK~LGVna~d~wV~LmP~f~~eew~~~~-----p---i~~l~~~-P 962 (1276)
|+||. ...+|||.+++++ + |++|++||||| |+|||+|+|.+.+-.+ + ...++.. |
T Consensus 261 RDFS~~d~s~~~~~rGtYla~tE~~t~gi~hLk~L~eLGVTh----VeLLPv~df~tvdE~~~~~~~~~~~~~~l~~~~~ 336 (898)
T TIGR02103 261 RDFSANDESVPAELRGKYLAFTAADSAGVQHLKKLADAGVTH----LHLLPTFDIATVNEEKEKVADIQQPFSKLCELNP 336 (898)
T ss_pred cccccCCCCCCcCcCceeeehhccchhhhHHHHHHHhCCCcE----EEEcChhhcCccccccccccccccchhhhhcccc
Confidence 99984 2568999999984 3 45555779999 9999999984322110 1 1111100 0
Q ss_pred c--------------------------cccccccccCCCcccCCCccccccccccccccccCCCCCCcccccccccccCC
Q psy9003 963 Y--------------------------MEKTVAYAESHDQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGT 1016 (1276)
Q Consensus 963 i--------------------------~E~~i~~~~S~~~~~WGYdp~nyf~~d~~~y~~~S~~~Dp~~~~dap~~~yas 1016 (1276)
- .+..+......+.+||||+|.+|| +|++||++
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~v~~~~~~d~yNWGYDP~~y~---------------------aPegSYat 395 (898)
T TIGR02103 337 DSKSSEFAGYCDSGSQLKQNDSKDNPEVQALNTLVRNLDSYNWGYDPFHYT---------------------VPEGSYAT 395 (898)
T ss_pred ccccccccccccccccccccccccchhhhhhhhhhccCCCCCCCCCCcccC---------------------CcChhhcc
Confidence 0 000000000124689999999999 66666665
Q ss_pred CCCccccccccccCCCCCCHHHHHHHHHHHHHcCCEEEEEEeccccCCcccCCCcCCCCCCCccc-ccCCCCCCCCCC-C
Q psy9003 1017 PEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFF-HDGPRGTHPLWD-S 1094 (1276)
Q Consensus 1017 ~s~hkYt~D~~~ID~~~Gt~eEfK~LV~alHk~GI~VILDvV~NHt~~~~~~~~~~f~g~~~~Yy-~~~~~g~~~~W~-g 1094 (1276)
.. ....++.|||+||++||++||+||||||||||+..++.....|++..|.|| +.+.+|...++. .
T Consensus 396 dp------------~g~~Ri~Efk~mV~alH~~Gi~VIlDVVyNHt~~~g~~~~s~ld~~~P~YY~r~~~~G~~~n~~~~ 463 (898)
T TIGR02103 396 DP------------EGPARIKEFREMVQALNKTGLNVVMDVVYNHTNASGPNDRSVLDKIVPGYYHRLNEDGGVENSTCC 463 (898)
T ss_pred CC------------CCchHHHHHHHHHHHHHHCCCEEEEEeecccccccCccCcccccccCcHhhEeeCCCCCeecCCCC
Confidence 31 112468999999999999999999999999999987655566788777555 445556554443 4
Q ss_pred cCCCCCcHHHHHHHHHHHHHHHHhCCCcEEccCCccccccccCCCCCCCCCCCccccCCCCCchHHHHHHHHHHHHHhhC
Q psy9003 1095 RLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKY 1174 (1276)
Q Consensus 1095 ~~LN~~np~Vr~~Iidsl~~Wv~eygVDGFRfD~a~~L~~~d~g~g~~~~~~~~~~~~~~~d~~a~~Fl~el~~~Vr~~~ 1174 (1276)
+++|++|||||++|+|+++||++||||||||||+|+++. ..||+++++.+++++
T Consensus 464 ~d~a~e~~~Vrk~iiDsl~~W~~ey~VDGFRfDlm~~~~--------------------------~~f~~~~~~~l~~i~ 517 (898)
T TIGR02103 464 SNTATEHRMMAKLIVDSLVVWAKDYKVDGFRFDLMGHHP--------------------------KAQMLAAREAIKALT 517 (898)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHHHcCCCEEEEechhhCC--------------------------HHHHHHHHHHHHHhC
Confidence 678999999999999999999999999999999999882 459999999999999
Q ss_pred CCeEEEEEccC
Q psy9003 1175 PEIITIAEDVS 1185 (1276)
Q Consensus 1175 PdvilIAE~~s 1185 (1276)
|+++++||.|.
T Consensus 518 pdi~l~GEgW~ 528 (898)
T TIGR02103 518 PEIYFYGEGWD 528 (898)
T ss_pred CCEEEEecCCC
Confidence 99999999986
|
Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102). |
| >TIGR02104 pulA_typeI pullulanase, type I | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-53 Score=517.09 Aligned_cols=327 Identities=18% Similarity=0.220 Sum_probs=257.5
Q ss_pred hHhhccccCCCCCcccCeeecCceEEEEEccCCcEEEEEccCCCCcc----ccccceecCCCeEEEEcCCCCCCCcccCc
Q psy9003 759 LVDECHKAGLFGTPEQLKYLVDECHKAGLLCFMHVVCAAGDFNNWNR----EEFAYKKLDFGKWELVLPPNPDGSCKLTH 834 (1276)
Q Consensus 759 F~~~Y~~~G~~Gtp~G~~y~~D~a~FalwAP~A~~VsLvGDFN~wd~----~~~pM~r~~~GVWsl~Ip~~~~G~~~i~h 834 (1276)
|++.|.+ .| |+|+++..++++|+||||+|++|+|++ |++|+. ..++|.+...|+|+++||+...|
T Consensus 2 ~~~~~~~---~~-~lG~~~~~~~~~F~vwaP~a~~V~l~~-~~~~~~~~~~~~~~m~~~~~gvw~~~i~~~~~g------ 70 (605)
T TIGR02104 2 FDDKFYY---DG-ELGAVYTPEKTVFRVWAPTATEVELLL-YKSGEDGEPYKVVKMKRGENGVWSAVLEGDLHG------ 70 (605)
T ss_pred cccccCC---CC-CCccEEECCeeEEEEECCCCCEEEEEE-EcCCCCCccceEEecccCCCCEEEEEECCCCCC------
Confidence 5555544 45 899999999999999999999999996 777753 36899988899999999987654
Q ss_pred ccEEEEEEEEeCCeeeeecCCcceEeecCCCCCccccceeeCCCCCCCCCcCCCC-C--CCCCCceEEEEecCCcccc--
Q psy9003 835 LSQVKLVVRNQHGHLLDRLSPWATYVTEPPVVGHAYEQRIWNPKPQDKHKWTSSK-P--KKPDNLKIYESHVGICTQE-- 909 (1276)
Q Consensus 835 Gs~YkYrV~~~dG~~~~~~DPYAkav~~~~~~s~v~~~~~~~p~~~~~y~W~~~r-p--~~~~d~vIYElHVr~ft~~-- 909 (1276)
..|+|+|+. +|.+..++||||+++..++.+|++++...+ ..++|..++ + +.+++++|||+|||+||..
T Consensus 71 -~~Y~y~v~~-~~~~~~~~DPya~~~~~~~~~s~v~d~~~~-----~~~~w~~~~~~~~~~~~~~vIYElhv~~ft~~~~ 143 (605)
T TIGR02104 71 -YFYTYQVCI-NGKWRETVDPYAKAVTVNGKRGAVIDLERT-----NPEGWEKDHRPRLENPEDAIIYELHIRDFSIHEN 143 (605)
T ss_pred -CEEEEEEEc-CCCeEEEcCCCcceeccCCCcEEEEccccc-----CccCcccccCCCCCChhHcEEEEEecchhccCCC
Confidence 699999986 466667999999999887665655443222 235788764 3 3568999999999999852
Q ss_pred ---CccCcHHHHHHh----------hhhHHHHcCCCCCccceeecccccccccccccceeeccCccccccccccccCCCc
Q psy9003 910 ---QKCASYEDFVRV----------VIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAESHDQ 976 (1276)
Q Consensus 910 ---~~~Gtf~gl~ek----------~LdyLK~LGVna~d~wV~LmP~f~~eew~~~~pi~~l~~~Pi~E~~i~~~~S~~~ 976 (1276)
..+|||.|++++ +|||||+||||+ |||||++++..- .+. .+ ...
T Consensus 144 ~~~~~~G~f~~~~e~~~~~~~g~~~~LdyL~~LGvt~----I~L~Pi~~~~~~--------------~~~----~~-~~~ 200 (605)
T TIGR02104 144 SGVKNKGKYLGLTETGTKGPNGVSTGLDYLKELGVTH----VQLLPVFDFAGV--------------DEE----DP-NNA 200 (605)
T ss_pred CCcCCCCceeeeeccCccccccchhHHHHHHHcCCCE----EEeCCccccccc--------------ccc----cC-CCC
Confidence 237999999975 499999999999 999988765211 000 01 124
Q ss_pred ccCCCccccccccccccccccCCCCCCcccccccccccCCCCCccccccccccCCCC--CCHHHHHHHHHHHHHcCCEEE
Q psy9003 977 ALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLF--GTPEQLKYLVDECHKAGLYVL 1054 (1276)
Q Consensus 977 ~~WGYdp~nyf~~d~~~y~~~S~~~Dp~~~~dap~~~yas~s~hkYt~D~~~ID~~~--Gt~eEfK~LV~alHk~GI~VI 1054 (1276)
++|||++.+|| +|+++|++. |.+ ++++|||+||++||++||+||
T Consensus 201 ~~wGY~~~~y~---------------------~~~~~y~~~-------------p~~~~~~~~efk~lV~~~H~~Gi~Vi 246 (605)
T TIGR02104 201 YNWGYDPLNYN---------------------VPEGSYSTN-------------PYDPATRIRELKQMIQALHENGIRVI 246 (605)
T ss_pred CCCCCCCccCC---------------------CcChhhhcC-------------CCccchHHHHHHHHHHHHHHCCCEEE
Confidence 56999999999 677666653 333 358999999999999999999
Q ss_pred EEEeccccCCcccCCCcCCCCCCCcc-cccCCCCCCCCCC--CcCCCCCcHHHHHHHHHHHHHHHHhCCCcEEccCCccc
Q psy9003 1055 LDVVHSHASKNVLDGLNEFDGTQACF-FHDGPRGTHPLWD--SRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTS 1131 (1276)
Q Consensus 1055 LDvV~NHt~~~~~~~~~~f~g~~~~Y-y~~~~~g~~~~W~--g~~LN~~np~Vr~~Iidsl~~Wv~eygVDGFRfD~a~~ 1131 (1276)
||||+|||+... ...|++..+.| |+.++.+.+.++. ++++|+++|+||++|+++++||++||||||||||+|..
T Consensus 247 lDvV~NH~~~~~---~~~f~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~v~~~i~~~~~~W~~e~~iDGfR~D~~~~ 323 (605)
T TIGR02104 247 MDVVYNHTYSRE---ESPFEKTVPGYYYRYNEDGTLSNGTGVGNDTASEREMMRKFIVDSVLYWVKEYNIDGFRFDLMGI 323 (605)
T ss_pred EEEEcCCccCCC---CCcccCCCCCeeEEECCCCCccCCCcccCCcccCCHHHHHHHHHHHHHHHHHcCCCEEEEechhc
Confidence 999999998642 23577776644 4555566555443 57899999999999999999999999999999999876
Q ss_pred cccccCCCCCCCCCCCccccCCCCCchHHHHHHHHHHHHHhhCCCeEEEEEccCCCCC
Q psy9003 1132 MLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPA 1189 (1276)
Q Consensus 1132 L~~~d~g~g~~~~~~~~~~~~~~~d~~a~~Fl~el~~~Vr~~~PdvilIAE~~s~~p~ 1189 (1276)
+. ..||+++++.+++.+|++++|||.|...+.
T Consensus 324 ~~--------------------------~~~~~~~~~~~~~~~p~~~ligE~w~~~~~ 355 (605)
T TIGR02104 324 HD--------------------------IETMNEIRKALNKIDPNILLYGEGWDLGTP 355 (605)
T ss_pred CC--------------------------HHHHHHHHHHHHhhCCCeEEEEccCCCCCC
Confidence 62 358999999999999999999999876543
|
Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases. |
| >PLN02877 alpha-amylase/limit dextrinase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-52 Score=513.83 Aligned_cols=347 Identities=17% Similarity=0.162 Sum_probs=252.0
Q ss_pred hhHhhccccCCCCCcccCeeecCceEEEEEccCCcEEEEEccCCCCc---c-ccccceecCCCeEEEEcCCCCCCCcccC
Q psy9003 758 YLVDECHKAGLFGTPEQLKYLVDECHKAGLLCFMHVVCAAGDFNNWN---R-EEFAYKKLDFGKWELVLPPNPDGSCKLT 833 (1276)
Q Consensus 758 ~F~~~Y~~~G~~Gtp~G~~y~~D~a~FalwAP~A~~VsLvGDFN~wd---~-~~~pM~r~~~GVWsl~Ip~~~~G~~~i~ 833 (1276)
.|++.|.+ . .|+|++|..++++|+||||+|++|+|+. |+.++ . ..++|. ...|+|++++++...|
T Consensus 204 ~lD~~y~y---~-~~LGA~~~~~g~~F~VWAPtA~~V~L~l-yd~~~~~~~~~~~~m~-~~~GVWsv~v~~~~~G----- 272 (970)
T PLN02877 204 VLDDLFAY---D-GPLGAHFSKDAVSLYLWAPTAQAVSLCL-YDDPRGKEPLEIVQLK-ESNGVWSVEGPKSWEG----- 272 (970)
T ss_pred hhhhhccC---C-CCCcceEecCCEEEEEECCCCCEEEEEE-ecCCCCccceEEeccc-CCCCEEEEEeccCCCC-----
Confidence 44555544 2 3799999999999999999999999983 33332 1 356787 6799999999987665
Q ss_pred cccEEEEEEEEe---CCe--eeeecCCcceEeecCCCCCccccc--eeeCCCCCCCCCcCCC---CCC--CCCCceEEEE
Q psy9003 834 HLSQVKLVVRNQ---HGH--LLDRLSPWATYVTEPPVVGHAYEQ--RIWNPKPQDKHKWTSS---KPK--KPDNLKIYES 901 (1276)
Q Consensus 834 hGs~YkYrV~~~---dG~--~~~~~DPYAkav~~~~~~s~v~~~--~~~~p~~~~~y~W~~~---rp~--~~~d~vIYEl 901 (1276)
.+|+|+|+.. .|. +..++||||++++.++.++.+.+. ..+.|. +|... +|+ .+++++|||+
T Consensus 273 --~~Y~Y~V~v~~p~~g~~~~~~v~DPYA~als~ng~~S~vvDl~~~~~~p~-----gW~~~~~~~p~~~~~~D~VIYEl 345 (970)
T PLN02877 273 --CYYVYEVSVYHPSTGKVETCYANDPYARGLSADGRRTLLVDLDSDDLKPE-----GWDNLAKEKPCLLSFSDISIYEL 345 (970)
T ss_pred --CeeEEEEeecccCCCcccccccCCccceEEecCCCceEEECCccccCCCh-----hhhhcccccCccCCCcccEEEEE
Confidence 6999999742 133 356899999999988777766553 234444 79863 342 5689999999
Q ss_pred ecCCccc------cCccCcHHHHHHh---hhhH---HHHcCCCCCccceeecccccccccccccc-----e-eeccCccc
Q psy9003 902 HVGICTQ------EQKCASYEDFVRV---VIPR---IVKQGMAIPDKWIELLKKFKDEDWNMGNI-----V-HTLTNRRY 963 (1276)
Q Consensus 902 HVr~ft~------~~~~Gtf~gl~ek---~Ldy---LK~LGVna~d~wV~LmP~f~~eew~~~~p-----i-~~l~~~Pi 963 (1276)
|||+||. ...+|||.+++++ +++| |++||||| |||||+|+|...+-.+. . ..+...|.
T Consensus 346 HVRDFS~~d~sv~~~~RGtylgftE~~s~gi~hLk~LkelGVTh----VeLLPvfDf~tvdE~~~~~~~~~~~~l~~~~~ 421 (970)
T PLN02877 346 HVRDFSANDETVHPDFRGGYLAFTSQDSAGVLHLKKLADAGLTH----VHLLPTFQFGSVDDEKENWKCVDPKELEKLPP 421 (970)
T ss_pred eccccccCCCCCCcCCCCcchhhhhhhhhHHHHHHHHHHcCCCE----EEeCCccccCCcccccccccccccchhccccc
Confidence 9999985 2568999999984 3455 55559999 99999999843211000 0 00000000
Q ss_pred ----cccccccccCCCcccCCCccccccccccccccccCCCCCCcccccccccccCCCCCccccccccccCCCCCCHHHH
Q psy9003 964 ----MEKTVAYAESHDQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQL 1039 (1276)
Q Consensus 964 ----~E~~i~~~~S~~~~~WGYdp~nyf~~d~~~y~~~S~~~Dp~~~~dap~~~yas~s~hkYt~D~~~ID~~~Gt~eEf 1039 (1276)
....+......+.+||||+|.+|| +|+++|++.. ++. .++.||
T Consensus 422 ~s~~~q~~v~~~~~~d~yNWGYDP~~Yf---------------------aPEgSYatdP-----------~g~-~RI~ef 468 (970)
T PLN02877 422 DSEEQQAAITAIQDDDGYNWGYNPVLWG---------------------VPKGSYASNP-----------DGP-CRIIEF 468 (970)
T ss_pred cchhhhhcccccccCCCCCCCCCccccC---------------------CCCcccccCC-----------CCc-chHHHH
Confidence 000000001125699999999999 6666666521 011 478999
Q ss_pred HHHHHHHHHcCCEEEEEEeccccCCcccCC-CcCCCCCCC-cccccCCCCCCCCCC-CcCCCCCcHHHHHHHHHHHHHHH
Q psy9003 1040 KYLVDECHKAGLYVLLDVVHSHASKNVLDG-LNEFDGTQA-CFFHDGPRGTHPLWD-SRLFNYSEIEVLRFLLSNLRWYL 1116 (1276)
Q Consensus 1040 K~LV~alHk~GI~VILDvV~NHt~~~~~~~-~~~f~g~~~-~Yy~~~~~g~~~~W~-g~~LN~~np~Vr~~Iidsl~~Wv 1116 (1276)
|+||++||++||+||||||||||+..++++ .+.+++..+ +||+.+++|.+.++. +++++.+++|||++|+|+++||+
T Consensus 469 k~mV~~lH~~GI~VImDVVyNHt~~~g~~~~~s~ld~~vP~YY~r~~~~G~~~ns~c~n~~Ase~~mvrklIlDsl~yW~ 548 (970)
T PLN02877 469 RKMVQALNRIGLRVVLDVVYNHLHSSGPFDENSVLDKIVPGYYLRRNSDGFIENSTCVNNTASEHYMVDRLIVDDLLNWA 548 (970)
T ss_pred HHHHHHHHHCCCEEEEEECCccccCCCCcchhhcccCCCCCceEEECCCCCcccCCccCCCccCCHHHHHHHHHHHHHHH
Confidence 999999999999999999999999877665 367888887 555667777766654 56779999999999999999999
Q ss_pred HhCCCcEEccCCccccccccCCCCCCCCCCCccccCCCCCchHHHHHHHHHHHHHhhC--------CCeEEEEEccC
Q psy9003 1117 DEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKY--------PEIITIAEDVS 1185 (1276)
Q Consensus 1117 ~eygVDGFRfD~a~~L~~~d~g~g~~~~~~~~~~~~~~~d~~a~~Fl~el~~~Vr~~~--------PdvilIAE~~s 1185 (1276)
+||||||||||+|+++. ...|..+++.++++. |+++++||.|.
T Consensus 549 ~ey~VDGFRFDlmg~i~--------------------------~~tm~~~~~~L~~i~~~~~~~dg~~i~lyGEgW~ 599 (970)
T PLN02877 549 VNYKVDGFRFDLMGHLM--------------------------KRTMVRAKDALQSLTLERDGVDGSSIYLYGEGWD 599 (970)
T ss_pred HHhCCCEEEEEcccccc--------------------------HHHHHHHHHHHHHHhhhhcccCCCceEEEEeCCC
Confidence 99999999999999883 124556666666663 78999999995
|
|
| >TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-51 Score=518.69 Aligned_cols=346 Identities=21% Similarity=0.242 Sum_probs=255.7
Q ss_pred hhHhhccccCCCCCcccCeeecCc-eEEEEEccCCcEEEEEc-cCCCCcc--ccccceecCCCeEEEEcCCCCCCCcccC
Q psy9003 758 YLVDECHKAGLFGTPEQLKYLVDE-CHKAGLLCFMHVVCAAG-DFNNWNR--EEFAYKKLDFGKWELVLPPNPDGSCKLT 833 (1276)
Q Consensus 758 ~F~~~Y~~~G~~Gtp~G~~y~~D~-a~FalwAP~A~~VsLvG-DFN~wd~--~~~pM~r~~~GVWsl~Ip~~~~G~~~i~ 833 (1276)
.|++.|.+ .| ++|+++..++ ++|+||||+|++|+|+. ++++|+. ..++|.+...|+|++++++...|. ...
T Consensus 308 ~~d~~y~y---~g-~LGa~~~~~g~v~F~vWAP~A~~V~L~lyd~~~~~~~~~~~~m~~~~~GvW~v~v~~~~~G~-~d~ 382 (1111)
T TIGR02102 308 LKDEMYAY---DG-KLGAQLHEDGTVTLKLWSPSADHVSVVLYDKDDQDKVVGTVELKKGDRGVWEVQLTKENTGI-DSL 382 (1111)
T ss_pred hhhhhhcc---CC-CCCCEEecCCCEEEEEECCCCCEEEEEEEeCCCCCCceeeEecccCCCCEEEEEECCcccCc-ccC
Confidence 45555543 33 6999998876 79999999999999984 4555543 478999988999999999754442 235
Q ss_pred cccEEEEEEEEeCCeeeeecCCcceEeecCCC-C----CccccceeeCCCCC--CCCCcCCCCC-CCCCCceEEEEecCC
Q psy9003 834 HLSQVKLVVRNQHGHLLDRLSPWATYVTEPPV-V----GHAYEQRIWNPKPQ--DKHKWTSSKP-KKPDNLKIYESHVGI 905 (1276)
Q Consensus 834 hGs~YkYrV~~~dG~~~~~~DPYAkav~~~~~-~----s~v~~~~~~~p~~~--~~y~W~~~rp-~~~~d~vIYElHVr~ 905 (1276)
+|.+|+|+|.. .|....++||||+++..... . .....+.++++... ..++|....+ ..+++++|||+|||+
T Consensus 383 ~G~~Y~Y~V~~-~~~~~~~~DPYA~al~~~n~~~~~~~~~~~ks~vvD~~~~~p~~~~~~~~~~~~~~~d~vIYElHVrd 461 (1111)
T TIGR02102 383 TGYYYHYEITR-GGDKVLALDPYAKSLAAWNDATSDDQIKVAKAAFVDPSSLGPQELDFAKIENFKKREDAIIYEAHVRD 461 (1111)
T ss_pred CCceEEEEEEC-CCceEEEeChhheEEeccCcccccccCCCCceEEEcCcccCccccccccccccCCccceEEEEEechh
Confidence 78899999985 46667899999999875221 0 01122334444321 2466775322 356899999999999
Q ss_pred cccc--------CccCcHHHHHHhhhhHHHHcCCCCCccceeecccccccccccccceeeccCccccccccccccCCCcc
Q psy9003 906 CTQE--------QKCASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAESHDQA 977 (1276)
Q Consensus 906 ft~~--------~~~Gtf~gl~ek~LdyLK~LGVna~d~wV~LmP~f~~eew~~~~pi~~l~~~Pi~E~~i~~~~S~~~~ 977 (1276)
||.. ..+|+|+|++++ |||||+||||+ |||||+|++..-+ +.+......++..+...+
T Consensus 462 Ft~d~~~~~~~~~~~Gtf~gl~ek-LdYLkeLGVT~----I~LmPv~d~~~~~---------e~~~~~~~~~~~~~~~~y 527 (1111)
T TIGR02102 462 FTSDPAIAGDLTAQFGTFAAFVEK-LDYLQDLGVTH----IQLLPVLSYFFVN---------EFKNKERMLDYASSNTNY 527 (1111)
T ss_pred hCcCCCCCcccccCCcCHHHHHHh-HHHHHHcCCCE----EEEcCcccccccc---------cccccccccccccccccc
Confidence 9842 147999999997 99999999999 9999998741100 000000000111122456
Q ss_pred cCCCccccccccccccccccCCCCCCcccccccccccCCCCCccccccccccCCCCCCHHHHHHHHHHHHHcCCEEEEEE
Q psy9003 978 LVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDV 1057 (1276)
Q Consensus 978 ~WGYdp~nyf~~d~~~y~~~S~~~Dp~~~~dap~~~yas~s~hkYt~D~~~ID~~~Gt~eEfK~LV~alHk~GI~VILDv 1057 (1276)
+|||+|.+|| +|+++|++.. . .+.++++|||+||++||++||+|||||
T Consensus 528 nWGYdp~~yf---------------------ape~~Ygtdp--------~---dp~~ri~EfK~LV~alH~~GI~VILDV 575 (1111)
T TIGR02102 528 NWGYDPQNYF---------------------ALSGMYSEDP--------K---DPELRIAEFKNLINEIHKRGMGVILDV 575 (1111)
T ss_pred ccCCCcCcCc---------------------ccccccccCC--------c---CccccHHHHHHHHHHHHHCCCEEEEec
Confidence 7999999999 6666666521 0 233579999999999999999999999
Q ss_pred eccccCCcccCCCcCCCCCCCcccc-cCCCCC-CCCCCCcCCCCCcHHHHHHHHHHHHHHHHhCCCcEEccCCccccccc
Q psy9003 1058 VHSHASKNVLDGLNEFDGTQACFFH-DGPRGT-HPLWDSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYH 1135 (1276)
Q Consensus 1058 V~NHt~~~~~~~~~~f~g~~~~Yy~-~~~~g~-~~~W~g~~LN~~np~Vr~~Iidsl~~Wv~eygVDGFRfD~a~~L~~~ 1135 (1276)
|||||+..+ .|++..+.||+ .+.+|. ...|+++++|+++||||++|+++++||++||||||||||+|+.+.
T Consensus 576 VyNHt~~~~-----~f~~~~p~Yy~~~~~~G~~~~~~~g~~l~~e~~~vrk~iiDsl~yWv~ey~VDGFRfDl~g~~d-- 648 (1111)
T TIGR02102 576 VYNHTAKVY-----IFEDLEPNYYHFMDADGTPRTSFGGGRLGTTHEMSRRILVDSIKYLVDEFKVDGFRFDMMGDHD-- 648 (1111)
T ss_pred ccccccccc-----cccccCCCceEeeCCCCCcccccCCCCCCcCCHHHHHHHHHHHHHHHHhcCCcEEEEeccccCC--
Confidence 999999863 57777776654 444554 346778899999999999999999999999999999999987541
Q ss_pred cCCCCCCCCCCCccccCCCCCchHHHHHHHHHHHHHhhCCCeEEEEEccCC
Q psy9003 1136 NHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSG 1186 (1276)
Q Consensus 1136 d~g~g~~~~~~~~~~~~~~~d~~a~~Fl~el~~~Vr~~~PdvilIAE~~s~ 1186 (1276)
..+|+.++..++++.|++++|||.|..
T Consensus 649 ------------------------~~~~~~~~~~l~~~dP~~~liGE~W~~ 675 (1111)
T TIGR02102 649 ------------------------AASIEIAYKEAKAINPNIIMIGEGWRT 675 (1111)
T ss_pred ------------------------HHHHHHHHHHHHHhCcCEEEEEecccc
Confidence 247888888899999999999999874
|
Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645). |
| >PRK03705 glycogen debranching enzyme; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-50 Score=489.99 Aligned_cols=333 Identities=20% Similarity=0.246 Sum_probs=246.9
Q ss_pred CCcccCeeecCceEEEEEccCCcEEEEEccCCCC-ccccccceecCCCeEEEEcCCCCCCCcccCcccEEEEEEEEe---
Q psy9003 770 GTPEQLKYLVDECHKAGLLCFMHVVCAAGDFNNW-NREEFAYKKLDFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQ--- 845 (1276)
Q Consensus 770 Gtp~G~~y~~D~a~FalwAP~A~~VsLvGDFN~w-d~~~~pM~r~~~GVWsl~Ip~~~~G~~~i~hGs~YkYrV~~~--- 845 (1276)
..|+|+++..++++|+||||+|++|+|+. |+.+ ....++|.+..+|+|++++|+...| .+|+|+|+++
T Consensus 9 ~~pLGa~~~~~g~~F~vwAP~A~~V~L~l-~~~~~~~~~~~m~~~~~gvW~~~v~~~~~G-------~~Y~yrv~g~~~p 80 (658)
T PRK03705 9 PTPLGAHYDGQGVNFTLFSAHAERVELCV-FDENGQEQRYDLPARSGDIWHGYLPGARPG-------LRYGYRVHGPWQP 80 (658)
T ss_pred CCCcceEEeCCCEEEEEECCCCCEEEEEE-EcCCCCeeeEeeeeccCCEEEEEECCCCCC-------CEEEEEEccccCc
Confidence 35789999999999999999999999984 4443 2346899888899999999987655 6999999863
Q ss_pred -CCee----eeecCCcceEeecCCCCCcc----------ccceeeCCCC---CCCCCcCCCCCC--CCCCceEEEEecCC
Q psy9003 846 -HGHL----LDRLSPWATYVTEPPVVGHA----------YEQRIWNPKP---QDKHKWTSSKPK--KPDNLKIYESHVGI 905 (1276)
Q Consensus 846 -dG~~----~~~~DPYAkav~~~~~~s~v----------~~~~~~~p~~---~~~y~W~~~rp~--~~~d~vIYElHVr~ 905 (1276)
.|.+ ...+||||++++.....+.. .++....|++ ..+|+|++++++ .++++||||+|||+
T Consensus 81 ~~g~~~~~~~~~~DPYA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~W~~~~~p~~~~~~~vIYE~hvr~ 160 (658)
T PRK03705 81 AQGHRFNPAKLLIDPCARQVEGEVKDDPRLHGGHDEPDYRDNAAIAPKCVVVDDHYDWEDDAPPRTPWGSTVIYEAHVRG 160 (658)
T ss_pred ccCcccCCCcEecCcCceEEccccccCccccccccCCccccccccCCceEEecCCCCCCCCCCCCCCccccEEEEEehhh
Confidence 3543 46899999999864311100 0111112221 135899987543 45899999999999
Q ss_pred ccc------cCccCcHHHHHHh-hhhHHHHcCCCCCccceeecccccccccccccceeeccCccccccccccccCCCccc
Q psy9003 906 CTQ------EQKCASYEDFVRV-VIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAESHDQAL 978 (1276)
Q Consensus 906 ft~------~~~~Gtf~gl~ek-~LdyLK~LGVna~d~wV~LmP~f~~eew~~~~pi~~l~~~Pi~E~~i~~~~S~~~~~ 978 (1276)
||. ...+|||+|++++ .|||||+||||+ |||||+|++.+- +.. ...+ ..++
T Consensus 161 ft~~~~~~~~~~~Gtf~g~~~~~~LdYLk~LGvt~----I~L~Pv~~~~~~------------~~~----~~~g--~~~y 218 (658)
T PRK03705 161 LTYLHPEIPVEIRGTYAALGHPVMIAYLKQLGITA----LELLPVAQFASE------------PRL----QRMG--LSNY 218 (658)
T ss_pred hcccCCCCCccccccHHHhhcccchHHHHHcCCCE----EEecCcccCCCc------------ccc----cccc--cccc
Confidence 984 2457999999973 599999999999 999988875211 000 0011 2467
Q ss_pred CCCccccccccccccccccCCCCCCcccccccccccCCCCCccccccccccCCCCCCHHHHHHHHHHHHHcCCEEEEEEe
Q psy9003 979 VGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVV 1058 (1276)
Q Consensus 979 WGYdp~nyf~~d~~~y~~~S~~~Dp~~~~dap~~~yas~s~hkYt~D~~~ID~~~Gt~eEfK~LV~alHk~GI~VILDvV 1058 (1276)
|||+|.+|| +|+++|++. + .++++|||+||++||++||+||||||
T Consensus 219 wGYd~~~yf---------------------a~d~~ygt~-------------~-~~~~~efk~LV~~~H~~GI~VIlDvV 263 (658)
T PRK03705 219 WGYNPLAMF---------------------ALDPAYASG-------------P-ETALDEFRDAVKALHKAGIEVILDVV 263 (658)
T ss_pred cCccccccc---------------------ccccccCCC-------------C-cchHHHHHHHHHHHHHCCCEEEEEEc
Confidence 999999999 777667763 1 15689999999999999999999999
Q ss_pred ccccCCcccCCC-cCCCCCC-CcccccCCCCCCCCCC--CcCCCCCcHHHHHHHHHHHHHHHHhCCCcEEccCCcccccc
Q psy9003 1059 HSHASKNVLDGL-NEFDGTQ-ACFFHDGPRGTHPLWD--SRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLY 1134 (1276)
Q Consensus 1059 ~NHt~~~~~~~~-~~f~g~~-~~Yy~~~~~g~~~~W~--g~~LN~~np~Vr~~Iidsl~~Wv~eygVDGFRfD~a~~L~~ 1134 (1276)
||||+.....+. ..+++.+ ++||+.++++.+.+|. +++||+++|+||++|+++++||++||||||||||+|..|.+
T Consensus 264 ~NHt~~~~~~~~~~~~~~~d~~~yy~~~~~g~~~~~~g~g~~ln~~~p~Vr~~iid~l~~W~~e~gVDGFRfD~a~~l~~ 343 (658)
T PRK03705 264 FNHSAELDLDGPTLSLRGIDNRSYYWIREDGDYHNWTGCGNTLNLSHPAVVDWAIDCLRYWVETCHVDGFRFDLATVLGR 343 (658)
T ss_pred ccCccCcCCCCcchhcccCCCccceEECCCCCcCCCCCccCcccCCCHHHHHHHHHHHHHHHHHhCCCEEEEEcHhhhCc
Confidence 999997543332 3456665 4677766777788887 48999999999999999999999999999999999999842
Q ss_pred ccCCCCCCCCCCCccccCCCCCchHHHHHHHHHHHHHhhCCCeEEEEEccCCC
Q psy9003 1135 HNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGM 1187 (1276)
Q Consensus 1135 ~d~g~g~~~~~~~~~~~~~~~d~~a~~Fl~el~~~Vr~~~PdvilIAE~~s~~ 1187 (1276)
. ++|. . ...+++.++. ..+.|++++|||.|...
T Consensus 344 ~-----~~~~------------~-~~~~~~ai~~--d~vl~~~~ligE~Wd~~ 376 (658)
T PRK03705 344 T-----PEFR------------Q-DAPLFTAIQN--DPVLSQVKLIAEPWDIG 376 (658)
T ss_pred C-----cccc------------h-hhHHHHHHhh--CccccceEEEEecccCC
Confidence 1 1111 0 1224444432 24678999999998654
|
|
| >TIGR02100 glgX_debranch glycogen debranching enzyme GlgX | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-50 Score=491.84 Aligned_cols=328 Identities=22% Similarity=0.289 Sum_probs=246.6
Q ss_pred CCcccCeeecCceEEEEEccCCcEEEEEccCCCCc---cccccceecCCCeEEEEcCCCCCCCcccCcccEEEEEEEEe-
Q psy9003 770 GTPEQLKYLVDECHKAGLLCFMHVVCAAGDFNNWN---REEFAYKKLDFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQ- 845 (1276)
Q Consensus 770 Gtp~G~~y~~D~a~FalwAP~A~~VsLvGDFN~wd---~~~~pM~r~~~GVWsl~Ip~~~~G~~~i~hGs~YkYrV~~~- 845 (1276)
..|+|+++..++++|+||||+|++|+|+- |+.++ ..+++|.+..+|+|+++|++..+| .+|+|+|+++
T Consensus 4 ~~~LGa~~~~~g~~F~vwap~A~~V~L~l-~~~~~~~~~~~~~m~~~~~gvW~~~v~~~~~g-------~~Y~yrv~g~~ 75 (688)
T TIGR02100 4 PFPLGATWDGQGVNFALFSANAEKVELCL-FDAQGEKEEARLPLPERTDDIWHGYLPGAQPG-------QLYGYRVHGPY 75 (688)
T ss_pred CcCCCeEEeCCcEEEEEECCCCCEEEEEE-EcCCCCceeeEEecccCCCCEEEEEECCCCCC-------CEEEEEEeeee
Confidence 35789999999999999999999999872 33332 136799888899999999987665 6999999863
Q ss_pred ---CCee----eeecCCcceEeecCCCCCc------------------------cccceeeCCCCCCCCCcCCC--CCC-
Q psy9003 846 ---HGHL----LDRLSPWATYVTEPPVVGH------------------------AYEQRIWNPKPQDKHKWTSS--KPK- 891 (1276)
Q Consensus 846 ---dG~~----~~~~DPYAkav~~~~~~s~------------------------v~~~~~~~p~~~~~y~W~~~--rp~- 891 (1276)
+|.+ ...+||||+++..+..++. ...+.++++ .|+|..+ +|.
T Consensus 76 ~~~~g~~f~~~~~~~DPYA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~v~d~----~~~w~~~~~~p~~ 151 (688)
T TIGR02100 76 DPENGHRFNPNKLLLDPYAKALDGDLIWDDALFGYRIGHPDQDLSFDERDSAPGMPKAVVVDP----DFDWGGDEQRPRT 151 (688)
T ss_pred CCCCCcccCcCceecCcCceeecCCCcccccccccccccccccccccccccccccCceEEeCC----CCCCCCcccCCCC
Confidence 3543 4689999999986532111 012333333 4889876 333
Q ss_pred CCCCceEEEEecCCccc------cCccCcHHHHHHh-hhhHHHHcCCCCCccceeecccccccccccccceeeccCcccc
Q psy9003 892 KPDNLKIYESHVGICTQ------EQKCASYEDFVRV-VIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYM 964 (1276)
Q Consensus 892 ~~~d~vIYElHVr~ft~------~~~~Gtf~gl~ek-~LdyLK~LGVna~d~wV~LmP~f~~eew~~~~pi~~l~~~Pi~ 964 (1276)
.++++||||+|||+||. ...+|||+|++++ .|||||+||||+ |||||+|++.+- ....
T Consensus 152 ~~~d~iIYE~hvr~Ft~~~~~~~~~~~Gtf~Gi~~~~~LdyLk~LGvta----I~L~Pi~~~~~~-----------~~~~ 216 (688)
T TIGR02100 152 PWEDTIIYEAHVKGFTQLHPDIPEELRGTYAGLAHPAMIDYLKKLGVTA----VELLPVHAFIDD-----------RHLL 216 (688)
T ss_pred CccccEEEEEEhHHhcCCCCCCCcccccCHHHHhccchhHHHHHcCCCE----EEECCcccCCcc-----------cccc
Confidence 56899999999999985 2457999999984 699999999999 999988875210 0000
Q ss_pred ccccccccCCCcccCCCccccccccccccccccCCCCCCcccccccccccCCCCCccccccccccCCCCCCHHHHHHHHH
Q psy9003 965 EKTVAYAESHDQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVD 1044 (1276)
Q Consensus 965 E~~i~~~~S~~~~~WGYdp~nyf~~d~~~y~~~S~~~Dp~~~~dap~~~yas~s~hkYt~D~~~ID~~~Gt~eEfK~LV~ 1044 (1276)
+ ....++|||+|.+|| +|+++|++. |+++|||+||+
T Consensus 217 ~-------~~~~~ywGYd~~~y~---------------------a~d~~y~~~----------------g~~~efk~LV~ 252 (688)
T TIGR02100 217 E-------KGLRNYWGYNTLGFF---------------------APEPRYLAS----------------GQVAEFKTMVR 252 (688)
T ss_pred c-------cCCCCccCcCccccc---------------------ccChhhcCC----------------CCHHHHHHHHH
Confidence 0 012467999999999 777556541 68999999999
Q ss_pred HHHHcCCEEEEEEeccccCCcccCCC-cCCCCCCC-cccccCCC--CCCCCCC--CcCCCCCcHHHHHHHHHHHHHHHHh
Q psy9003 1045 ECHKAGLYVLLDVVHSHASKNVLDGL-NEFDGTQA-CFFHDGPR--GTHPLWD--SRLFNYSEIEVLRFLLSNLRWYLDE 1118 (1276)
Q Consensus 1045 alHk~GI~VILDvV~NHt~~~~~~~~-~~f~g~~~-~Yy~~~~~--g~~~~W~--g~~LN~~np~Vr~~Iidsl~~Wv~e 1118 (1276)
+||++||+||||||||||+..+..+. ..|++.++ +||+..++ +.+.+|. ++++|+++|+||++|+++++||++|
T Consensus 253 ~~H~~GI~VIlDvV~NHt~~~~~~~~~~~~~~~d~~~yy~~~~~~~~~~~~~~g~gn~ln~~~p~vr~~i~d~l~~W~~e 332 (688)
T TIGR02100 253 ALHDAGIEVILDVVYNHTAEGNELGPTLSFRGIDNASYYRLQPDDKRYYINDTGTGNTLNLSHPRVLQMVMDSLRYWVTE 332 (688)
T ss_pred HHHHCCCEEEEEECcCCccCcCCCCCcccccCCCCCcceEecCCCCceecCCCCccccccCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998765433 35666553 67766543 4455554 5899999999999999999999999
Q ss_pred CCCcEEccCCccccccccCCCCCCCCCCCccccCCCCCchHHHHHHHHHHHHHhhCCCeEEEEEccCCC
Q psy9003 1119 YQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGM 1187 (1276)
Q Consensus 1119 ygVDGFRfD~a~~L~~~d~g~g~~~~~~~~~~~~~~~d~~a~~Fl~el~~~Vr~~~PdvilIAE~~s~~ 1187 (1276)
|||||||||+|..|.+... +|. . ...|++++++ ....|++++|||.|...
T Consensus 333 ~gIDGfR~D~a~~l~~~~~----~~~------------~-~~~~~~~i~~--d~~~~~~~ligE~W~~~ 382 (688)
T TIGR02100 333 MHVDGFRFDLATTLGRELY----GFD------------M-LSGFFTAIRQ--DPVLAQVKLIAEPWDIG 382 (688)
T ss_pred cCCcEEEEechhhhccccC----CCc------------c-cHHHHHHHHh--CcccCCeEEEEeeecCC
Confidence 9999999999998853211 111 1 2347777765 24789999999998653
|
This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase. |
| >TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-49 Score=476.32 Aligned_cols=298 Identities=24% Similarity=0.336 Sum_probs=242.0
Q ss_pred eEEEEEccCCcEEEEEccCCCCccccccceecCCCeEEEEcCCCCCCCcccCcccEEEEEEEEeCCeeeeecCCcceEee
Q psy9003 782 CHKAGLLCFMHVVCAAGDFNNWNREEFAYKKLDFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHGHLLDRLSPWATYVT 861 (1276)
Q Consensus 782 a~FalwAP~A~~VsLvGDFN~wd~~~~pM~r~~~GVWsl~Ip~~~~G~~~i~hGs~YkYrV~~~dG~~~~~~DPYAkav~ 861 (1276)
++|++|||+|++|+|+.+ +..++|.+.+.|+|++++++... |..|+|+|+ | ...++||||+++.
T Consensus 1 v~FrlwAP~A~~V~L~l~-----~~~~~m~k~~~GvW~~~v~~~~~-------G~~Y~y~v~---g-~~~v~DPya~~~~ 64 (542)
T TIGR02402 1 VRFRLWAPTAASVKLRLN-----GALHAMQRLGDGWFEITVPPVGP-------GDRYGYVLD---D-GTPVPDPASRRQP 64 (542)
T ss_pred CEEEEECCCCCEEEEEeC-----CCEEeCeECCCCEEEEEECCCCC-------CCEEEEEEe---e-eEEecCccccccc
Confidence 479999999999999852 24689999899999999997765 469999995 3 3468999999864
Q ss_pred cCCCCCccccceeeCCCCCCCCCcCCCCC--CCCCCceEEEEecCCccccCccCcHHHHHHhhhhHHHHcCCCCCcccee
Q psy9003 862 EPPVVGHAYEQRIWNPKPQDKHKWTSSKP--KKPDNLKIYESHVGICTQEQKCASYEDFVRVVIPRIVKQGMAIPDKWIE 939 (1276)
Q Consensus 862 ~~~~~s~v~~~~~~~p~~~~~y~W~~~rp--~~~~d~vIYElHVr~ft~~~~~Gtf~gl~ek~LdyLK~LGVna~d~wV~ 939 (1276)
.... ..+.+++|. .|+|+.+.+ +.+++++|||+|||+|++ .|+|+|++++ |||||+||||+ ||
T Consensus 65 ~~~~----~~S~V~d~~---~~~w~~~~~~~~~~~~~viYE~hv~~f~~---~G~~~gi~~~-l~yl~~LGv~~----i~ 129 (542)
T TIGR02402 65 DGVH----GPSQVVDPD---RYAWQDTGWRGRPLEEAVIYELHVGTFTP---EGTFDAAIEK-LPYLADLGITA----IE 129 (542)
T ss_pred cCCC----CCeEEecCc---ccCCCCccccCCCccccEEEEEEhhhcCC---CCCHHHHHHh-hHHHHHcCCCE----EE
Confidence 3221 124556664 478887654 346899999999999986 6999999996 99999999999 99
Q ss_pred ecccccccccccccceeeccCccccccccccccCCCcccCCCccccccccccccccccCCCCCCcccccccccccCCCCC
Q psy9003 940 LLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAESHDQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQ 1019 (1276)
Q Consensus 940 LmP~f~~eew~~~~pi~~l~~~Pi~E~~i~~~~S~~~~~WGYdp~nyf~~d~~~y~~~S~~~Dp~~~~dap~~~yas~s~ 1019 (1276)
|||+++ + + ..++|||++.+|| +|+
T Consensus 130 L~Pi~~--------------------~--~-----~~~~~GY~~~~~~---------------------~~~-------- 153 (542)
T TIGR02402 130 LMPVAQ--------------------F--P-----GTRGWGYDGVLPY---------------------APH-------- 153 (542)
T ss_pred eCcccc--------------------C--C-----CCCCCCCCccCcc---------------------ccc--------
Confidence 995543 2 1 1257999999999 555
Q ss_pred ccccccccccCCCCCCHHHHHHHHHHHHHcCCEEEEEEeccccCCcccCCCcCCCCCCCcccccCCCCCCCCCCCcCCCC
Q psy9003 1020 LKYLVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRLFNY 1099 (1276)
Q Consensus 1020 hkYt~D~~~ID~~~Gt~eEfK~LV~alHk~GI~VILDvV~NHt~~~~~~~~~~f~g~~~~Yy~~~~~g~~~~W~g~~LN~ 1099 (1276)
++||+++|||+||++||++||+||||+|+||++.++.. +....+ ||... ....| ++.+|+
T Consensus 154 -----------~~~G~~~e~k~lV~~aH~~Gi~VilD~V~NH~~~~~~~----~~~~~~-y~~~~---~~~~w-g~~~n~ 213 (542)
T TIGR02402 154 -----------NAYGGPDDLKALVDAAHGLGLGVILDVVYNHFGPEGNY----LPRYAP-YFTDR---YSTPW-GAAINF 213 (542)
T ss_pred -----------cccCCHHHHHHHHHHHHHCCCEEEEEEccCCCCCcccc----ccccCc-cccCC---CCCCC-CCcccc
Confidence 88999999999999999999999999999999876432 112223 66532 23445 568999
Q ss_pred CcH---HHHHHHHHHHHHHHHhCCCcEEccCCccccccccCCCCCCCCCCCccccCCCCCchHHHHHHHHHHHHHhhCCC
Q psy9003 1100 SEI---EVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPE 1176 (1276)
Q Consensus 1100 ~np---~Vr~~Iidsl~~Wv~eygVDGFRfD~a~~L~~~d~g~g~~~~~~~~~~~~~~~d~~a~~Fl~el~~~Vr~~~Pd 1176 (1276)
++| +||++|+++++||++||||||||||++..|.. .++..||+++++.++++.|+
T Consensus 214 ~~~~~~~vr~~i~~~~~~W~~e~~iDGfR~D~~~~~~~----------------------~~~~~~l~~~~~~~~~~~p~ 271 (542)
T TIGR02402 214 DGPGSDEVRRYILDNALYWLREYHFDGLRLDAVHAIAD----------------------TSAKHILEELAREVHELAAE 271 (542)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHhCCcEEEEeCHHHhcc----------------------ccHHHHHHHHHHHHHHHCCC
Confidence 999 99999999999999999999999999988831 12467999999999999999
Q ss_pred ---eEEEEEccCCCCCCccccccCCcccCcccC-CC
Q psy9003 1177 ---IITIAEDVSGMPASCRPVTEGGTGFDYRLV-SL 1208 (1276)
Q Consensus 1177 ---vilIAE~~s~~p~~~~p~~~gglGFD~~~n-~l 1208 (1276)
+++|||.|...|..+.|...++.|||+.|+ .+
T Consensus 272 ~~~~~li~E~~~~~~~~~~~~~~~~~~~d~~~~~~~ 307 (542)
T TIGR02402 272 LRPVHLIAESDLNDPSLVTPREDGGYGLDAQWNDDF 307 (542)
T ss_pred CceEEEEEecCCCCCcccccccCCccceEEEECchH
Confidence 999999998888888777778899999999 44
|
Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system. |
| >COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-49 Score=478.43 Aligned_cols=304 Identities=24% Similarity=0.297 Sum_probs=236.0
Q ss_pred CCcccCeeec---CceEEEEEccCCcEEEEE-ccCCC-Ccc-ccccceecCCCeEEEEcCCCCCCCcccCcccEEEEEEE
Q psy9003 770 GTPEQLKYLV---DECHKAGLLCFMHVVCAA-GDFNN-WNR-EEFAYKKLDFGKWELVLPPNPDGSCKLTHLSQVKLVVR 843 (1276)
Q Consensus 770 Gtp~G~~y~~---D~a~FalwAP~A~~VsLv-GDFN~-wd~-~~~pM~r~~~GVWsl~Ip~~~~G~~~i~hGs~YkYrV~ 843 (1276)
-.|.|.++.. ++++|++|+..|.+|+|+ -|... -.. +.++|..+.+.+|++.+|+...| ..|.|++.
T Consensus 17 ~~plga~~~~~~~~g~~f~l~s~~a~~v~l~l~d~~~~~~~~~~~~~~~~~G~iw~~~~p~~~~g-------~~y~yr~~ 89 (697)
T COG1523 17 PYPLGATVIDIDGDGVNFALFSSHAERVELCLFDEAGNTEEGRLYPYDGELGAIWHLWLPGAKPG-------QVYGYRVH 89 (697)
T ss_pred cccccceeeeccCcceEEeeeccccceEEEEecCcccccccccccccCCccccEEEEEcCCCcee-------eEEEEecC
Confidence 3578888744 899999999999999998 22221 111 22778777778999999988776 69999996
Q ss_pred Ee----CCeee----eecCCcceEeecCCCCC-cccc----------------ceeeCCCC--CCC-CCcCCCCCC--CC
Q psy9003 844 NQ----HGHLL----DRLSPWATYVTEPPVVG-HAYE----------------QRIWNPKP--QDK-HKWTSSKPK--KP 893 (1276)
Q Consensus 844 ~~----dG~~~----~~~DPYAkav~~~~~~s-~v~~----------------~~~~~p~~--~~~-y~W~~~rp~--~~ 893 (1276)
++ .|.++ ...||||+.+.+....+ ..+. +....|+. .+. ++|..++++ ++
T Consensus 90 g~~~~~~g~~f~~~k~l~dpya~~l~g~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~Ksvv~~~~~~w~~~~~~~~p~ 169 (697)
T COG1523 90 GPYDPEEGHRFDPNKLLLDPYAKALDGDLKWGTPALFGYYYGYQITNLSPDRDSADPYPKSVVIDPLFDWENDKPPRIPW 169 (697)
T ss_pred CCcCCccCeeeccccccccceeEEeccccccCccccccccccccccccCccccccccCCceEEeccccccccCCCCCCCc
Confidence 52 35555 46899999998765433 1110 00111221 122 789988654 45
Q ss_pred CCceEEEEecCCcc------ccCccCcHHHHHHh-hhhHHHHcCCCCCccceeecccccccccccccceeeccCcccccc
Q psy9003 894 DNLKIYESHVGICT------QEQKCASYEDFVRV-VIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEK 966 (1276)
Q Consensus 894 ~d~vIYElHVr~ft------~~~~~Gtf~gl~ek-~LdyLK~LGVna~d~wV~LmP~f~~eew~~~~pi~~l~~~Pi~E~ 966 (1276)
.++||||+|||+|| ++..+|||.|+++. .|+|||+||||+ |+|||++++.+- |..
T Consensus 170 ~~~vIYE~HVr~fT~~~~~v~~~~rGTy~gl~~~~~i~yLk~LGvta----VeLLPV~~~~~~------------~~l-- 231 (697)
T COG1523 170 EDTVIYEAHVRDFTQLHPGVPEELRGTYLGLAEPVIIDYLKDLGVTA----VELLPVFDFYDE------------PHL-- 231 (697)
T ss_pred cceEEEEeeecccccCCCCCchhhccceehhccccHHHHHHHhCCce----EEEecceEEecc------------ccc--
Confidence 89999999999999 24678999999983 499999999999 999988876322 111
Q ss_pred ccccccCCCcccCCCccccccccccccccccCCCCCCcccccccccccCCCCCccccccccccCCCCCCHHHHHHHHHHH
Q psy9003 967 TVAYAESHDQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDEC 1046 (1276)
Q Consensus 967 ~i~~~~S~~~~~WGYdp~nyf~~d~~~y~~~S~~~Dp~~~~dap~~~yas~s~hkYt~D~~~ID~~~Gt~eEfK~LV~al 1046 (1276)
..+...|||||+|.+|| ||+++|+++. .+-+++.|||.||+++
T Consensus 232 ----~~~gl~n~WGYdP~~fF---------------------Ap~~~Yss~p------------~p~~~i~EfK~mV~~l 274 (697)
T COG1523 232 ----DKSGLNNNWGYDPLNFF---------------------APEGRYASNP------------EPATRIKEFKDMVKAL 274 (697)
T ss_pred ----cccccccccCCCccccc---------------------CCCccccCCC------------CcchHHHHHHHHHHHH
Confidence 12246799999999999 7888888742 1346789999999999
Q ss_pred HHcCCEEEEEEeccccCCcccCCC-cCCCCCCC-cccccCCCCCCCCCC--CcCCCCCcHHHHHHHHHHHHHHHHhCCCc
Q psy9003 1047 HKAGLYVLLDVVHSHASKNVLDGL-NEFDGTQA-CFFHDGPRGTHPLWD--SRLFNYSEIEVLRFLLSNLRWYLDEYQFD 1122 (1276)
Q Consensus 1047 Hk~GI~VILDvV~NHt~~~~~~~~-~~f~g~~~-~Yy~~~~~g~~~~W~--g~~LN~~np~Vr~~Iidsl~~Wv~eygVD 1122 (1276)
|++||+||||||||||++....+. .+|+++++ +||+.+++|.+.+|+ ||++|.+|||||++|+|+|+||++|||||
T Consensus 275 HkaGI~VILDVVfNHTae~~~~g~t~~f~~id~~~Yyr~~~dg~~~N~TGcGNtln~~hpmvrk~ivDsLrYWv~e~hVD 354 (697)
T COG1523 275 HKAGIEVILDVVFNHTAEGNELGPTLSFRGIDPNYYYRLDPDGYYSNGTGCGNTLNTEHPMVRKLIVDSLRYWVEEYHVD 354 (697)
T ss_pred HHcCCEEEEEEeccCcccccCcCcccccccCCcCceEEECCCCCeecCCccCcccccCChHHHHHHHHHHHHHHHHhCCC
Confidence 999999999999999998655443 68999997 677888889998887 69999999999999999999999999999
Q ss_pred EEccCCccccccc
Q psy9003 1123 GFRFDGVTSMLYH 1135 (1276)
Q Consensus 1123 GFRfD~a~~L~~~ 1135 (1276)
|||||+|+.+.+.
T Consensus 355 GFRFDLa~~l~r~ 367 (697)
T COG1523 355 GFRFDLAGVLGRE 367 (697)
T ss_pred ceeecchhhcccc
Confidence 9999999988644
|
|
| >PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-46 Score=478.67 Aligned_cols=382 Identities=18% Similarity=0.202 Sum_probs=273.3
Q ss_pred CCCcccCeeecCceEEEEEccCCcEEEEEccCCCCcc---ccccceecCCCeEEEEcCCCCCCCcccCcccEEEEEEEEe
Q psy9003 769 FGTPEQLKYLVDECHKAGLLCFMHVVCAAGDFNNWNR---EEFAYKKLDFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQ 845 (1276)
Q Consensus 769 ~Gtp~G~~y~~D~a~FalwAP~A~~VsLvGDFN~wd~---~~~pM~r~~~GVWsl~Ip~~~~G~~~i~hGs~YkYrV~~~ 845 (1276)
+..|.|+++..++++|+||||+|++|+|+ .|+.|+. ..++|.+..+|+|++++++...| ..|+|++.++
T Consensus 12 ~~~plGA~~~~~gv~F~v~ap~A~~V~L~-lf~~~~~~~~~~~~l~~~~g~vW~~~i~~~~~g-------~~Ygyrv~g~ 83 (1221)
T PRK14510 12 FREPLGAVPDGGGVNLALFSGAAERVEFC-LFDLWGVREEARIKLPGRTGDVWHGFIVGVGPG-------ARYGNRQEGP 83 (1221)
T ss_pred CCCCCceEEECCeEEEEEECCCCCEEEEE-EEECCCCCeeEEEECCCCcCCEEEEEEccCCCC-------cEEEEEeccC
Confidence 44689999999999999999999999998 4666643 35788777899999999987665 5999999764
Q ss_pred C----Cee----eeecCCcceEeecCCCCCc-cc------------cceeeCCCC--CCCCCcCCCCCC--CCCCceEEE
Q psy9003 846 H----GHL----LDRLSPWATYVTEPPVVGH-AY------------EQRIWNPKP--QDKHKWTSSKPK--KPDNLKIYE 900 (1276)
Q Consensus 846 d----G~~----~~~~DPYAkav~~~~~~s~-v~------------~~~~~~p~~--~~~y~W~~~rp~--~~~d~vIYE 900 (1276)
. |.+ ...+||||+.+......+. ++ ++....|+. .+.|+|..++++ .+++++|||
T Consensus 84 ~~p~~g~rf~p~~~~lDPYA~~~~~~~~~~~~i~~~~~~~~~~~~~d~~~~~pk~vv~~~~~W~~~~~~~~~~~d~vIYE 163 (1221)
T PRK14510 84 GGPGEGHRFNPPKLLVDPYARPLDRPFWLHQAIFDDRFFNGDEDLTDSAVLVPKVVVPTPFTWAPRSPLHGDWDDSPLYE 163 (1221)
T ss_pred CCcccccccCCCeEeeCCCCceEeCCcccCcccccccccCCCcccccCcccCccceeecccccCCCCCCCCCcccCeEEE
Confidence 3 222 3589999999987432110 11 122233332 135899876543 568999999
Q ss_pred EecCCccc------cCccCcHHHHHH-hhhhHHHHcCCCCCccceeecccccccccccccceeeccCccccccccccccC
Q psy9003 901 SHVGICTQ------EQKCASYEDFVR-VVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAES 973 (1276)
Q Consensus 901 lHVr~ft~------~~~~Gtf~gl~e-k~LdyLK~LGVna~d~wV~LmP~f~~eew~~~~pi~~l~~~Pi~E~~i~~~~S 973 (1276)
+|||+||. .+.+|+|+++.+ +.|||||+||||+ |||||+|++.+ +..... .+
T Consensus 164 ~hvr~ft~~~~~~gg~~~Gt~~~l~~~~~i~yLk~LGvt~----I~L~Pi~~~~~-----------~~~~~~-----~g- 222 (1221)
T PRK14510 164 MNVRGFTLRHDFFPGNLRGTFAKLAAPEAISYLKKLGVSI----VELNPIFASVD-----------EHHLPQ-----LG- 222 (1221)
T ss_pred EccchhhccCCCCCcccCcHHhhcCCchhHHHHHHcCCCE----EEeCCccccCc-----------cccccc-----cc-
Confidence 99999985 345799999882 3599999999999 99998886421 001101 11
Q ss_pred CCcccCCCccccccccccccccccCCCCCCcccccccccccCCCCCccccccccccCCCCC--CHHHHHHHHHHHHHcCC
Q psy9003 974 HDQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFG--TPEQLKYLVDECHKAGL 1051 (1276)
Q Consensus 974 ~~~~~WGYdp~nyf~~d~~~y~~~S~~~Dp~~~~dap~~~yas~s~hkYt~D~~~ID~~~G--t~eEfK~LV~alHk~GI 1051 (1276)
..+||||++.+|| +|+ |+|| +++|||+||++||++||
T Consensus 223 -~~~yWGY~~~~yf---------------------a~d-------------------p~yg~~~~~efk~lV~~~H~~GI 261 (1221)
T PRK14510 223 -LSNYWGYNTVAFL---------------------APD-------------------PRLAPGGEEEFAQAIKEAQSAGI 261 (1221)
T ss_pred -CcCcCCCCCCCCC---------------------CcC-------------------hhhccCcHHHHHHHHHHHHHCCC
Confidence 2478999999999 666 6777 99999999999999999
Q ss_pred EEEEEEeccccCCcccCCC-cCCCCCC-CcccccCC--CCCCCCCC--CcCCCCCcHHHHHHHHHHHHHHHHhCCCcEEc
Q psy9003 1052 YVLLDVVHSHASKNVLDGL-NEFDGTQ-ACFFHDGP--RGTHPLWD--SRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFR 1125 (1276)
Q Consensus 1052 ~VILDvV~NHt~~~~~~~~-~~f~g~~-~~Yy~~~~--~g~~~~W~--g~~LN~~np~Vr~~Iidsl~~Wv~eygVDGFR 1125 (1276)
+||||||||||+.++.++. .++.+.+ +.||+..+ .+.+.+|. ++.+|+++|+|+++|+++++||++ |||||||
T Consensus 262 ~VILDvV~NHt~~~~~~~p~~~~~~~d~~~yy~~~~~~~~~y~~~~G~gn~~n~~~p~v~~~i~d~lr~Wv~-~gVDGfR 340 (1221)
T PRK14510 262 AVILDVVFNHTGESNHYGPTLSAYGSDNSPYYRLEPGNPKEYENWWGCGNLPNLERPFILRLPMDVLRSWAK-RGVDGFR 340 (1221)
T ss_pred EEEEEEccccccCCCCCCCcccccCCCCCCceEecCCCCCcccCCCCCCCccccCCHHHHHHHHHHHHHHHH-hCCCEEE
Confidence 9999999999998865543 2455544 46776542 34455554 468899999999999999999999 9999999
Q ss_pred cCCccccccccCCCCCCCCCCCccccCCCCCchHHHHHHHHHHHHHhhCCCeEE-----EEEccCCCCCCccccccCCcc
Q psy9003 1126 FDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIIT-----IAEDVSGMPASCRPVTEGGTG 1200 (1276)
Q Consensus 1126 fD~a~~L~~~d~g~g~~~~~~~~~~~~~~~d~~a~~Fl~el~~~Vr~~~Pdvil-----IAE~~s~~p~~~~p~~~gglG 1200 (1276)
||+|..|.+. +..||+.++..++++.|+.++ |||.|...+.-. . ...
T Consensus 341 fDla~~l~r~-----------------------~~~f~~~~~~~l~ai~~d~~l~~~~ligE~Wd~~~~~~---~--~g~ 392 (1221)
T PRK14510 341 LDLADELARE-----------------------PDGFIDEFRQFLKAMDQDPVLRRLKMIAEVWDDGLGGY---Q--YGK 392 (1221)
T ss_pred EechhhhccC-----------------------ccchHHHHHHHHHHhCCCcCcccCcEEEecccCCCCcc---c--cCC
Confidence 9999988421 124899999999999999887 999886543211 1 112
Q ss_pred cC---cccC-CCccc---------hhhHHHHHHHHHHHHHhcccC---CCCCeeEeecCCCeEEE
Q psy9003 1201 FD---YRLV-SLEGS---------ALSALFDAAMNTTEERFKWLS---ADPGYVSTKHEGDKVII 1249 (1276)
Q Consensus 1201 FD---~~~n-~lEes---------aLS~~F~~~Ln~l~~~~p~L~---~~~~~~l~nHD~~RVls 1249 (1276)
|+ ..|| .+... ....+|.+.+......+|.-. ....+++.+||..|+..
T Consensus 393 f~~~~~~~N~~frd~vr~f~~g~~~~~~~~a~~l~gs~d~~~~~~~~~~~~iNfi~~HD~~rl~d 457 (1221)
T PRK14510 393 FPQYWGEWNDPLRDIMRRFWLGDIGMAGELATRLAGSADIFPHRRRNFSRSINFITAHDGFTLLD 457 (1221)
T ss_pred CCcceeeeccHHHHHHHHHhcCCCchHHHHHHHHhCcHhhcCccCCCcccceEEEeeCCchHHHH
Confidence 33 2344 22100 001456666655555555211 11236788999999665
|
|
| >PRK10785 maltodextrin glucosidase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-35 Score=363.02 Aligned_cols=357 Identities=13% Similarity=0.098 Sum_probs=236.8
Q ss_pred eecCceEEEEEccC---CcEEEEEccCCCCccccccceec----CCCeEEEEcCCC-CCCCcccCcccEEEEEEEEeCCe
Q psy9003 777 YLVDECHKAGLLCF---MHVVCAAGDFNNWNREEFAYKKL----DFGKWELVLPPN-PDGSCKLTHLSQVKLVVRNQHGH 848 (1276)
Q Consensus 777 y~~D~a~FalwAP~---A~~VsLvGDFN~wd~~~~pM~r~----~~GVWsl~Ip~~-~~G~~~i~hGs~YkYrV~~~dG~ 848 (1276)
+..+..++++..+. .++|.|.-...+ .....+|.+. ....|++.++.. ..+ -..|.|++... ++
T Consensus 16 ~~~~~~~~~lr~~~~~~~~~v~l~~~~~~-~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~------~~~Y~F~l~~~-~~ 87 (598)
T PRK10785 16 QSKDQLLITLWLTGEDPPQRVMLRCEPDN-EEYLLPMEKQRSQPQVTAWRASLPLNSGQP------RRRYSFKLLWH-DR 87 (598)
T ss_pred cCCCEEEEEEEEcCCCceEEEEEEEEcCC-CEEEEEeEEeecCCCceEEEEEEEcCCCCc------eEEEEEEEEeC-CE
Confidence 45677889998874 457777522211 1245788762 235799998732 222 26788888643 33
Q ss_pred eeeecCCcceEeecCCCCCccccceeeCCCCCCCCCcCCC-CCC-CCCCceEEEEecCCcccc-------C---------
Q psy9003 849 LLDRLSPWATYVTEPPVVGHAYEQRIWNPKPQDKHKWTSS-KPK-KPDNLKIYESHVGICTQE-------Q--------- 910 (1276)
Q Consensus 849 ~~~~~DPYAkav~~~~~~s~v~~~~~~~p~~~~~y~W~~~-rp~-~~~d~vIYElHVr~ft~~-------~--------- 910 (1276)
..+ +... +.+.. .|.....|++... .+| +.+++||||+.|..|... .
T Consensus 88 ~~~--------~~~~-g~~~~------~~~~~~~f~~~~~~~~P~W~~~~v~YqIfpDRF~ng~~~n~~~~~~~~~~~~~ 152 (598)
T PRK10785 88 QRW--------FTPQ-GFSRR------PPARLEQFAVDVPDQGPQWVADQVFYQIFPDRFARSLPREAVQDHVYYHHAAG 152 (598)
T ss_pred EEE--------EcCC-ceeec------cCCCccceEeeCCCCCCchhhcCEEEEechhhhcCCCcccCccCCceeeccCC
Confidence 211 1110 00000 0110011222221 223 448999999999988420 0
Q ss_pred ---------------------ccCcHHHHHHhhhhHHHHcCCCCCccceeecccccccccccccceeeccCccccccccc
Q psy9003 911 ---------------------KCASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVA 969 (1276)
Q Consensus 911 ---------------------~~Gtf~gl~ek~LdyLK~LGVna~d~wV~LmP~f~~eew~~~~pi~~l~~~Pi~E~~i~ 969 (1276)
..|+|+|++++ ||||++||||+ |||+|+| +.
T Consensus 153 ~~~~~~~w~~~~~~~~~~~~f~GGDl~GI~~k-LdYL~~LGv~~----I~L~Pif--------------------~s--- 204 (598)
T PRK10785 153 QEIILRDWDEPVTAQAGGSTFYGGDLDGISEK-LPYLKKLGVTA----LYLNPIF--------------------TA--- 204 (598)
T ss_pred CcccccCcCCCcccccccccccCcCHHHHHHH-HHHHHHcCCCE----EEeCCcc--------------------cC---
Confidence 13899999997 99999999999 9999544 21
Q ss_pred cccCCCcccCCCccccccccccccccccCCCCCCcccccccccccCCCCCccccccccccCCCCCCHHHHHHHHHHHHHc
Q psy9003 970 YAESHDQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKA 1049 (1276)
Q Consensus 970 ~~~S~~~~~WGYdp~nyf~~d~~~y~~~S~~~Dp~~~~dap~~~yas~s~hkYt~D~~~ID~~~Gt~eEfK~LV~alHk~ 1049 (1276)
..+|||++.||+ + |||.||+.++|++||++||++
T Consensus 205 ------~s~hgYd~~Dy~---------------------~-------------------iDp~~Gt~~df~~Lv~~aH~r 238 (598)
T PRK10785 205 ------PSVHKYDTEDYR---------------------H-------------------VDPQLGGDAALLRLRHATQQR 238 (598)
T ss_pred ------CCCCCcCccccc---------------------c-------------------cCcccCCHHHHHHHHHHHHHC
Confidence 125788888877 3 459999999999999999999
Q ss_pred CCEEEEEEeccccCCcccCCCcC-------CCCCC---CcccccCCCCCCCCCCC----cCCCCCcHHHHHHHHH----H
Q psy9003 1050 GLYVLLDVVHSHASKNVLDGLNE-------FDGTQ---ACFFHDGPRGTHPLWDS----RLFNYSEIEVLRFLLS----N 1111 (1276)
Q Consensus 1050 GI~VILDvV~NHt~~~~~~~~~~-------f~g~~---~~Yy~~~~~g~~~~W~g----~~LN~~np~Vr~~Iid----s 1111 (1276)
||+||||+|+|||+.+++|+... +.... ..||...+++.+..|.+ ++||++||+||++|++ +
T Consensus 239 GikVilD~V~NH~~~~~~~f~~~~~~~~ga~~~~~spy~dwf~~~~~~~~~~w~g~~~lPdLN~~np~v~~~l~~~~~~v 318 (598)
T PRK10785 239 GMRLVLDGVFNHTGDSHPWFDRHNRGTGGACHHPDSPWRDWYSFSDDGRALDWLGYASLPKLDFQSEEVVNEIYRGEDSI 318 (598)
T ss_pred CCEEEEEECCCcCCCCCHHHHHhhccccccccCCCCCcceeeEECCCCCcCCcCCCCcCccccCCCHHHHHHHHhhhhHH
Confidence 99999999999999988764211 11111 24665555566666763 7999999999999995 8
Q ss_pred HHHHHHh-CCCcEEccCCccccccccCCCCCCCCCCCccccCCCCCchHHHHHHHHHHHHHhhCCCeEEEEEccCCCCCC
Q psy9003 1112 LRWYLDE-YQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPAS 1190 (1276)
Q Consensus 1112 l~~Wv~e-ygVDGFRfD~a~~L~~~d~g~g~~~~~~~~~~~~~~~d~~a~~Fl~el~~~Vr~~~PdvilIAE~~s~~p~~ 1190 (1276)
+++|+++ |||||||+|+|..+... . .....+.||+++++.+++.+|++++|||.|.....
T Consensus 319 ~~~Wl~~~~giDG~RlDva~~v~~~-----~-------------~~~~~~~f~~~~~~~vk~~~pd~~ligE~~~~~~~- 379 (598)
T PRK10785 319 VRHWLKAPYNIDGWRLDVVHMLGEG-----G-------------GARNNLQHVAGITQAAKEENPEAYVLGEHFGDARQ- 379 (598)
T ss_pred HHHhhcCCCCCcEEEEecHhHhccc-----c-------------CccccHHHHHHHHHHHHhhCCCeEEEEeccCChhh-
Confidence 9999997 99999999999877311 0 01124679999999999999999999998865322
Q ss_pred ccccccCCcccCcccCC--Cc----------c-c----hh-hHHHHHHHHHHHHHhcccCCC-CCeeEeecCCCeEEEEE
Q psy9003 1191 CRPVTEGGTGFDYRLVS--LE----------G-S----AL-SALFDAAMNTTEERFKWLSAD-PGYVSTKHEGDKVIIFE 1251 (1276)
Q Consensus 1191 ~~p~~~gglGFD~~~n~--lE----------e-s----aL-S~~F~~~Ln~l~~~~p~L~~~-~~~~l~nHD~~RVlsf~ 1251 (1276)
+. .+.+||..+|. +. . . .+ ...|...+++.+..+|.-... ..+++.|||++|+++..
T Consensus 380 ---~l-~~~~~d~~mny~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~n~l~nHD~~R~~~~~ 455 (598)
T PRK10785 380 ---WL-QADVEDAAMNYRGFAFPLRAFLANTDIAYHPQQIDAQTCAAWMDEYRAGLPHQQQLRQFNQLDSHDTARFKTLL 455 (598)
T ss_pred ---hc-cCccccccccchhhhhHHHHHhhccccccCccCCCHHHHHHHHHHHHHhCCHHHHHHhhhccCCCccchhhhhh
Confidence 21 23344444331 10 0 0 01 156777788888877752211 22568899999999876
Q ss_pred cC
Q psy9003 1252 RA 1253 (1276)
Q Consensus 1252 R~ 1253 (1276)
.+
T Consensus 456 ~~ 457 (598)
T PRK10785 456 GG 457 (598)
T ss_pred CC
Confidence 53
|
|
| >PLN02447 1,4-alpha-glucan-branching enzyme | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=355.12 Aligned_cols=164 Identities=30% Similarity=0.472 Sum_probs=151.7
Q ss_pred hcccccccCCCCCccHHHHHHHHHHHHHHHHHHhhccCchHHhhHHHhhccceEecCCcEEEEEEccCCceEEEEeecc-
Q psy9003 16 ELHKLLERDPYLNPYQYEMKRRYGLMVNFLEQFEKHEGGIEKFTTSYNKYGIHVQADNSVRCFEWAPSAQQLYLTGNVS- 94 (1276)
Q Consensus 16 ~~~~l~~~dp~L~~~~~~~~~Ry~~~~~~~~~i~~~~ggl~~Fs~~y~~fGah~~~~gg~~f~~wAP~A~~v~l~gdfn- 94 (1276)
+..+|+++||||+||+++|++||++|++++++|++.||||++||++|++||||+.. +||+||||||+|++|+|+||||
T Consensus 58 ~~~~~~~~d~~l~~~~~~~~~r~~~~~~~~~~i~~~~~~l~~f~~~y~~lGa~~~~-~g~~FrvWAP~A~~V~LvGdFN~ 136 (758)
T PLN02447 58 DGLGIYEIDPMLEPYEDHLRYRYSRYRRRREEIEKNEGGLEAFSRGYEKFGFNRSE-GGITYREWAPGAKAAALIGDFNN 136 (758)
T ss_pred CcceeeecCcchhhHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHhceeEEec-CCEEEEEECCCCCEEEEEEecCC
Confidence 34689999999999999999999999999999999999999999999999999877 6899999999999999999995
Q ss_pred CCCcc--e------EEEEEccC------ccccceEEEEEecCCC---------------CCCc-----cccccc------
Q psy9003 95 LTPWS--I------MEEASLSS------IKLIQSIQYILTGVFG---------------TPEQ-----LKYLVD------ 134 (1276)
Q Consensus 95 ~~~w~--m------~~~~~~~~------~~~g~~yky~i~~~~g---------------rp~~-----as~~~d------ 134 (1276)
|+... | +|++|||+ ++.|+.|||+|.+++| +|++ +|+|+|
T Consensus 137 W~~~~~~M~~~~~GvWe~~ip~~~g~~~~~~G~~Yky~i~~~~g~~~~r~dpya~~~~~~p~~~~~~~~svv~dp~~~~~ 216 (758)
T PLN02447 137 WNPNAHWMTKNEFGVWEIFLPDADGSPAIPHGSRVKIRMETPDGRWVDRIPAWIKYAVQAPGEIGAPYNGVYWDPPEEEK 216 (758)
T ss_pred CCCCccCceeCCCCEEEEEECCccccccCCCCCEEEEEEEeCCCcEEeecCchHheeeccCCccCCCCceEEeCCCCCCC
Confidence 53333 6 99999999 9999999999999877 6776 788877
Q ss_pred -----------------cccccc------CCChHHHHHHHHHHHHhcCc------------------------------C
Q psy9003 135 -----------------ECHKAG------LFGTPEQLKYLVDECHKAGL------------------------------F 161 (1276)
Q Consensus 135 -----------------e~h~gs------~~~y~e~a~~li~y~~~~~y------------------------------y 161 (1276)
|+|+|+ +.+|+++++.++||+|++|| |
T Consensus 217 y~w~~~~~~~~~~~~IYE~Hvg~~~~~~~~gty~~~~~~~L~ylk~LG~t~I~LmPi~e~~~~~~wGY~~~~~fa~~~~~ 296 (758)
T PLN02447 217 YVFKHPRPPRPAALRIYEAHVGMSSEEPKVNSYREFADDVLPRIKALGYNAVQLMAIQEHAYYGSFGYHVTNFFAVSSRS 296 (758)
T ss_pred CCCCCCCCCCCCCCEEEEEeCCcccCCCCCCCHHHHHHHHHHHHHHcCCCEEEECCccccCCCCCCCcCcccCccccccc
Confidence 999998 58999999999999999999 8
Q ss_pred CCHHHHHHHHHHHHHcCCC
Q psy9003 162 GTPEQLKYLVDECHKAGLF 180 (1276)
Q Consensus 162 gtp~~l~~~vd~~h~~~i~ 180 (1276)
|||+||++|||+||++||+
T Consensus 297 Gtp~dlk~LVd~aH~~GI~ 315 (758)
T PLN02447 297 GTPEDLKYLIDKAHSLGLR 315 (758)
T ss_pred CCHHHHHHHHHHHHHCCCE
Confidence 9999999999999999998
|
|
| >TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-33 Score=337.74 Aligned_cols=283 Identities=17% Similarity=0.186 Sum_probs=195.3
Q ss_pred CCCCceEEEEecCCccc--cCccCcHHHHHHhhhhHHHHcCCCCCccceeecccccccccccccceeeccCccccccccc
Q psy9003 892 KPDNLKIYESHVGICTQ--EQKCASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVA 969 (1276)
Q Consensus 892 ~~~d~vIYElHVr~ft~--~~~~Gtf~gl~ek~LdyLK~LGVna~d~wV~LmP~f~~eew~~~~pi~~l~~~Pi~E~~i~ 969 (1276)
++++++|||+++|+|++ ....|+|+|++++ ||||++||||+ |||+|+|+ .
T Consensus 1 W~~~~v~Y~i~~~~f~~~~~~~~G~~~gi~~~-l~yl~~lG~~~----i~l~Pi~~--------------------~--- 52 (543)
T TIGR02403 1 WWQKKVIYQIYPKSFYDSTGDGTGDLRGIIEK-LDYLKKLGVDY----IWLNPFYV--------------------S--- 52 (543)
T ss_pred CcccCEEEEEEhHHHhcCCCCCccCHHHHHHh-HHHHHHcCCCE----EEECCccc--------------------C---
Confidence 35789999999999975 4567999999996 99999999999 99995442 2
Q ss_pred cccCCCcccCCCccccccccccccccccCCCCCCcccccccccccCCCCCccccccccccCCCCCCHHHHHHHHHHHHHc
Q psy9003 970 YAESHDQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKA 1049 (1276)
Q Consensus 970 ~~~S~~~~~WGYdp~nyf~~d~~~y~~~S~~~Dp~~~~dap~~~yas~s~hkYt~D~~~ID~~~Gt~eEfK~LV~alHk~ 1049 (1276)
+...+||++.||+ + |||+||+.++|++||++||++
T Consensus 53 -----~~~~~gY~~~d~~---------------------~-------------------id~~~Gt~~~~~~lv~~ah~~ 87 (543)
T TIGR02403 53 -----PQKDNGYDVSDYY---------------------A-------------------INPLFGTMADFEELVSEAKKR 87 (543)
T ss_pred -----CCCCCCCCccccC---------------------c-------------------cCcccCCHHHHHHHHHHHHHC
Confidence 1234689988888 3 348999999999999999999
Q ss_pred CCEEEEEEeccccCCcccCCCcCCCC--CCCcccc-cCCCCCC-C---------CCC----------------CcCCCCC
Q psy9003 1050 GLYVLLDVVHSHASKNVLDGLNEFDG--TQACFFH-DGPRGTH-P---------LWD----------------SRLFNYS 1100 (1276)
Q Consensus 1050 GI~VILDvV~NHt~~~~~~~~~~f~g--~~~~Yy~-~~~~g~~-~---------~W~----------------g~~LN~~ 1100 (1276)
||+||||+|+|||+.+++|+.....+ .-..||. .++.+.. . .|. .++||++
T Consensus 88 gi~vilD~v~NH~~~~~~~f~~~~~~~~~y~~~y~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~y~~~f~~~~pdln~~ 167 (543)
T TIGR02403 88 NIKIMLDMVFNHTSTEHEWFKKALAGDSPYRDFYIWRDPKGKPPTNWQSKFGGSAWEYFGDTGQYYLHLFDKTQADLNWE 167 (543)
T ss_pred CCEEEEEECccccccchHHHHHhhcCCCcccCceEecCCCCCCCCcccccCCCcCccccCCCCceEEeccCCcCCccCCC
Confidence 99999999999999988765322222 1123332 1111110 1 121 3789999
Q ss_pred cHHHHHHHHHHHHHHHHhCCCcEEccCCccccccccCCCCCCCCCC-CccccCCCCCchHHHHHHHHHHHHHhhCCCeEE
Q psy9003 1101 EIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGH-YDEYFGLNVDTDALIYLMVANKFLHDKYPEIIT 1179 (1276)
Q Consensus 1101 np~Vr~~Iidsl~~Wv~eygVDGFRfD~a~~L~~~d~g~g~~~~~~-~~~~~~~~~d~~a~~Fl~el~~~Vr~~~Pdvil 1179 (1276)
||+||++|.++++||++ +||||||||++.+|..... + ++.... -..++. ..++..+||+++++.+++ .|++++
T Consensus 168 np~v~~~i~~~~~~W~~-~giDGfRlDa~~~i~~~~~-~-~~~~~~~~~~~~~--~~~~~~~f~~~~~~~~~~-~~~~~l 241 (543)
T TIGR02403 168 NPEVREELKDVVNFWRD-KGVDGFRLDVINLISKDQF-F-EDDEIGDGRRFYT--DGPRVHEYLQEMNQEVFG-DNDSVT 241 (543)
T ss_pred CHHHHHHHHHHHHHHHH-cCCCEEEEeeehhhccCcc-c-CCCCCCCCccccC--CChHHHHHHHHHHHHhhc-cCCeEE
Confidence 99999999999999998 6999999999999853210 0 000000 000111 124567899999999988 899999
Q ss_pred EEEccCCCCCCccccc-cCCcccCcccCCC--c-----cch-----h-hHHHHHHHHHHHHHhcccCCCCCeeEeecCCC
Q psy9003 1180 IAEDVSGMPASCRPVT-EGGTGFDYRLVSL--E-----GSA-----L-SALFDAAMNTTEERFKWLSADPGYVSTKHEGD 1245 (1276)
Q Consensus 1180 IAE~~s~~p~~~~p~~-~gglGFD~~~n~l--E-----esa-----L-S~~F~~~Ln~l~~~~p~L~~~~~~~l~nHD~~ 1245 (1276)
|||.|...+.....+. ..+.+||+.||+- . ... . ...+...+..+.+.++....+..+++.|||++
T Consensus 242 vgE~~~~~~~~~~~y~~~~~~~~d~~~nf~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~fl~NHD~~ 321 (543)
T TIGR02403 242 VGEMSSTTIENCIRYSNPENKELSMVFTFHHLKVDYPNGEKWTLAKFDFAKLKEIFSTWQTGMQAGGGWNALFWNNHDQP 321 (543)
T ss_pred EEEeCCCCHHHHHhhhCCCCCeeCeEEChhhhhchhccccccccCCCCHHHHHHHHHHHHHhccccCcceeeecCCCChh
Confidence 9999876554333332 2234566666611 0 100 1 13566666666665553234455678999999
Q ss_pred eEEEEEcC
Q psy9003 1246 KVIIFERA 1253 (1276)
Q Consensus 1246 RVlsf~R~ 1253 (1276)
|+++..++
T Consensus 322 R~~s~~g~ 329 (543)
T TIGR02403 322 RAVSRFGD 329 (543)
T ss_pred hHHHhcCC
Confidence 99886653
|
Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor. |
| >TIGR02456 treS_nterm trehalose synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-32 Score=331.83 Aligned_cols=205 Identities=22% Similarity=0.306 Sum_probs=158.0
Q ss_pred CCCCceEEEEecCCcccc--CccCcHHHHHHhhhhHHHHcCCCCCccceeecccccccccccccceeeccCccccccccc
Q psy9003 892 KPDNLKIYESHVGICTQE--QKCASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVA 969 (1276)
Q Consensus 892 ~~~d~vIYElHVr~ft~~--~~~Gtf~gl~ek~LdyLK~LGVna~d~wV~LmP~f~~eew~~~~pi~~l~~~Pi~E~~i~ 969 (1276)
++++++|||++|++|++. ++.|+|+|++++ ||||++||||+ |||+|+|+ .
T Consensus 2 W~~~~viYqi~~~~f~d~~~~~~Gdl~gi~~~-Ldyl~~LGv~~----i~L~Pi~~--------------------~--- 53 (539)
T TIGR02456 2 WYKDAVFYEVHVRSFFDSNGDGIGDFPGLTSK-LDYLKWLGVDA----LWLLPFFQ--------------------S--- 53 (539)
T ss_pred ccccceEEEEehhHhhcCCCCCccCHHHHHHh-HHHHHHCCCCE----EEECCCcC--------------------C---
Confidence 457899999999999853 457999999996 99999999999 99995442 1
Q ss_pred cccCCCcccCCCccccccccccccccccCCCCCCcccccccccccCCCCCccccccccccCCCCCCHHHHHHHHHHHHHc
Q psy9003 970 YAESHDQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKA 1049 (1276)
Q Consensus 970 ~~~S~~~~~WGYdp~nyf~~d~~~y~~~S~~~Dp~~~~dap~~~yas~s~hkYt~D~~~ID~~~Gt~eEfK~LV~alHk~ 1049 (1276)
+..+|||++.||+ +++ |+||+.++||+||++||++
T Consensus 54 -----~~~~~gY~~~dy~---------------------~vd-------------------~~~Gt~~df~~Lv~~ah~~ 88 (539)
T TIGR02456 54 -----PLRDDGYDVSDYR---------------------AIL-------------------PEFGTIDDFKDFVDEAHAR 88 (539)
T ss_pred -----CCCCCCCCccccc---------------------ccC-------------------hhhCCHHHHHHHHHHHHHC
Confidence 1235899999988 444 8999999999999999999
Q ss_pred CCEEEEEEeccccCCcccCCCcCCC---CCCCccccc-CCC------------CCCCCCC----------------CcCC
Q psy9003 1050 GLYVLLDVVHSHASKNVLDGLNEFD---GTQACFFHD-GPR------------GTHPLWD----------------SRLF 1097 (1276)
Q Consensus 1050 GI~VILDvV~NHt~~~~~~~~~~f~---g~~~~Yy~~-~~~------------g~~~~W~----------------g~~L 1097 (1276)
||+||||+|+||++.+++|+..... ...+.||.. +.. ....+|. .++|
T Consensus 89 Gi~vilD~V~NH~s~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~y~~~f~~~~pdl 168 (539)
T TIGR02456 89 GMRVIIDLVLNHTSDQHPWFQEARSNPDGPYRDFYVWSDTDEKYKDTRIIFVDTEKSNWTFDPVAKQYYWHRFFSHQPDL 168 (539)
T ss_pred CCEEEEEeccCcCCCCCHHHHHHhhCCCCCCCceEEecCCCcccccccccccccCCCCccccCCcCeeEEecccCCCCcc
Confidence 9999999999999998876432111 111234422 100 0112231 3789
Q ss_pred CCCcHHHHHHHHHHHHHHHHhCCCcEEccCCccccccccCCCCCCCCCCCccccCCCCC-chHHHHHHHHHHHHHhhCCC
Q psy9003 1098 NYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVD-TDALIYLMVANKFLHDKYPE 1176 (1276)
Q Consensus 1098 N~~np~Vr~~Iidsl~~Wv~eygVDGFRfD~a~~L~~~d~g~g~~~~~~~~~~~~~~~d-~~a~~Fl~el~~~Vr~~~Pd 1176 (1276)
|+++|+||++|++++++|++ +||||||||++.+|... .+ .. ..+ ++..+||+++++.+++.+|+
T Consensus 169 n~~np~vr~~l~~~~~~w~~-~GvDGfRlDav~~~~~~-~~--~~-----------~~~~p~~~~f~~~~~~~v~~~~p~ 233 (539)
T TIGR02456 169 NYDNPAVHDAVHDVMRFWLD-LGVDGFRLDAVPYLYER-EG--TS-----------CENLPETHEFLKRLRKMVDREYPG 233 (539)
T ss_pred CCCCHHHHHHHHHHHHHHHH-cCCCEEEEecHHhhhcc-CC--Cc-----------cCCCchHHHHHHHHHHHHHHhCCC
Confidence 99999999999999999998 89999999999988422 11 00 111 23578999999999999999
Q ss_pred eEEEEEcc
Q psy9003 1177 IITIAEDV 1184 (1276)
Q Consensus 1177 vilIAE~~ 1184 (1276)
+++|||.+
T Consensus 234 ~~~iaE~~ 241 (539)
T TIGR02456 234 RMLLAEAN 241 (539)
T ss_pred eEEEEEeC
Confidence 99999974
|
Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530). |
| >PRK10933 trehalose-6-phosphate hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-32 Score=328.85 Aligned_cols=284 Identities=17% Similarity=0.213 Sum_probs=191.5
Q ss_pred CCCCCCceEEEEecCCccc--cCccCcHHHHHHhhhhHHHHcCCCCCccceeecccccccccccccceeeccCccccccc
Q psy9003 890 PKKPDNLKIYESHVGICTQ--EQKCASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKT 967 (1276)
Q Consensus 890 p~~~~d~vIYElHVr~ft~--~~~~Gtf~gl~ek~LdyLK~LGVna~d~wV~LmP~f~~eew~~~~pi~~l~~~Pi~E~~ 967 (1276)
|.++++.||||+++|+|.+ ....|+|+|++++ ||||++||||+ |||+|+|+ .
T Consensus 5 ~~W~~~~v~Yqi~~~~f~d~~~~~~Gdl~gi~~~-ldyl~~lGv~~----i~l~P~~~--------------------~- 58 (551)
T PRK10933 5 PHWWQNGVIYQIYPKSFQDTTGSGTGDLRGVTQR-LDYLQKLGVDA----IWLTPFYV--------------------S- 58 (551)
T ss_pred chhhhcCeEEEEEchHhhcCCCCCCcCHHHHHHh-hHHHHhCCCCE----EEECCCCC--------------------C-
Confidence 3466899999999999975 4567999999996 99999999999 99995442 1
Q ss_pred cccccCCCcccCCCccccccccccccccccCCCCCCcccccccccccCCCCCccccccccccCCCCCCHHHHHHHHHHHH
Q psy9003 968 VAYAESHDQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECH 1047 (1276)
Q Consensus 968 i~~~~S~~~~~WGYdp~nyf~~d~~~y~~~S~~~Dp~~~~dap~~~yas~s~hkYt~D~~~ID~~~Gt~eEfK~LV~alH 1047 (1276)
++..|||++.||+ ++ ||+||+.++|++||++||
T Consensus 59 -------~~~~~gY~~~d~~---------------------~i-------------------d~~~Gt~~d~~~lv~~~h 91 (551)
T PRK10933 59 -------PQVDNGYDVANYT---------------------AI-------------------DPTYGTLDDFDELVAQAK 91 (551)
T ss_pred -------CCCCCCCCcccCC---------------------Cc-------------------CcccCCHHHHHHHHHHHH
Confidence 1234899999888 44 489999999999999999
Q ss_pred HcCCEEEEEEeccccCCcccCCCcCCCCCCC--ccccc--C-----CC-------CCCCCCC--------------CcCC
Q psy9003 1048 KAGLYVLLDVVHSHASKNVLDGLNEFDGTQA--CFFHD--G-----PR-------GTHPLWD--------------SRLF 1097 (1276)
Q Consensus 1048 k~GI~VILDvV~NHt~~~~~~~~~~f~g~~~--~Yy~~--~-----~~-------g~~~~W~--------------g~~L 1097 (1276)
++||+||||+|+||++.+++|+........+ .||.. + +. +....|+ .++|
T Consensus 92 ~~gi~vilD~V~NH~s~~~~wf~~~~~~~~~y~d~y~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~y~~~f~~~~pdL 171 (551)
T PRK10933 92 SRGIRIILDMVFNHTSTQHAWFREALNKESPYRQFYIWRDGEPETPPNNWRSKFGGSAWRWHAESEQYYLHLFAPEQADL 171 (551)
T ss_pred HCCCEEEEEECCCCccCchhHHHhhcCCCCCCcCceEecCCCCCCCCCcccccCCCccccccCCCCceEeecccccCCcc
Confidence 9999999999999999998775433222222 23321 1 00 0001111 3699
Q ss_pred CCCcHHHHHHHHHHHHHHHHhCCCcEEccCCccccccccCCCCCCCCCCCccccCCCCCchHHHHHHHHHHHHHhhCCCe
Q psy9003 1098 NYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEI 1177 (1276)
Q Consensus 1098 N~~np~Vr~~Iidsl~~Wv~eygVDGFRfD~a~~L~~~d~g~g~~~~~~~~~~~~~~~d~~a~~Fl~el~~~Vr~~~Pdv 1177 (1276)
|++||+||++|++++++|++ +||||||+|++.+|... .++.........+++ ...++...||+++++.+. ..+++
T Consensus 172 n~~np~V~~~l~~~~~~W~~-~GvDGfRlDa~~~i~~~-~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~-~~~~~ 246 (551)
T PRK10933 172 NWENPAVRAELKKVCEFWAD-RGVDGLRLDVVNLISKD-QDFPDDLDGDGRRFY--TDGPRAHEFLQEMNRDVF-TPRGL 246 (551)
T ss_pred CCCCHHHHHHHHHHHHHHHH-CCCcEEEEcchhhcCcC-CCCCCCccccccccc--CCChHHHHHHHHHHHHhh-cccCc
Confidence 99999999999999999996 89999999999999532 111110000011111 112456789999987654 34578
Q ss_pred EEEEEccCCCCCCccccc-cCCcccCcccC--CCc-----cch--h---h-HHHHHHHHHHHHHhcccCCCCCeeEeecC
Q psy9003 1178 ITIAEDVSGMPASCRPVT-EGGTGFDYRLV--SLE-----GSA--L---S-ALFDAAMNTTEERFKWLSADPGYVSTKHE 1243 (1276)
Q Consensus 1178 ilIAE~~s~~p~~~~p~~-~gglGFD~~~n--~lE-----esa--L---S-~~F~~~Ln~l~~~~p~L~~~~~~~l~nHD 1243 (1276)
++|||.|...+..+..+. ..+..+++.|+ .+. ... + + ..+.+.+.+++...+. ..++.+++.|||
T Consensus 247 ~~vgE~~~~~~~~~~~y~~~~~~~~~~~fnf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~fl~NHD 325 (551)
T PRK10933 247 MTVGEMSSTSLEHCQRYAALTGSELSMTFNFHHLKVDYPNGEKWTLAKPDFVALKTLFRHWQQGMHN-VAWNALFWCNHD 325 (551)
T ss_pred EEEEeecCCCHHHHHHhhcccCCeeeeEecHHHhhhhhccCCcccccccCHHHHHHHHHHHHHhhcc-cCeeccccCCCC
Confidence 999998865443322221 12223444444 110 000 0 1 3455666666665542 346677889999
Q ss_pred CCeEEEEEc
Q psy9003 1244 GDKVIIFER 1252 (1276)
Q Consensus 1244 ~~RVlsf~R 1252 (1276)
++|+++-.+
T Consensus 326 ~~R~~sr~g 334 (551)
T PRK10933 326 QPRIVSRFG 334 (551)
T ss_pred cccHHHHcC
Confidence 999888654
|
|
| >PRK09505 malS alpha-amylase; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.7e-30 Score=314.30 Aligned_cols=274 Identities=16% Similarity=0.137 Sum_probs=170.5
Q ss_pred CCCCCCceEEEEecCCccccC--------------------ccCcHHHHHHhhhhHHHHcCCCCCccceeeccccccccc
Q psy9003 890 PKKPDNLKIYESHVGICTQEQ--------------------KCASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDW 949 (1276)
Q Consensus 890 p~~~~d~vIYElHVr~ft~~~--------------------~~Gtf~gl~ek~LdyLK~LGVna~d~wV~LmP~f~~eew 949 (1276)
|..|++++||++.++.|.... ..|+|+|++++ ||||++||||+ |||+|+|+-
T Consensus 184 ~~~W~~aviYqI~~DRF~nGd~~Nd~~~g~~~d~~~~~~~f~GGdl~Gi~~k-Ldyl~~LGv~a----IwlsPi~~~--- 255 (683)
T PRK09505 184 PFDWHNATVYFVLTDRFENGDPSNDHSYGRHKDGMQEIGTFHGGDLRGLTEK-LDYLQQLGVNA----LWISSPLEQ--- 255 (683)
T ss_pred ChhhccCcEEEEehhhhcCCCcccccccCcCCCCccccCcccCCCHHHHHHh-hHHHHHcCCCE----EEeCccccc---
Confidence 346789999999999995211 13999999997 99999999999 999965541
Q ss_pred ccccceeeccCccccccccccccCCCcccCCCccccccccccccccccCCCCCCcccccccccccCCCCCccc-cccccc
Q psy9003 950 NMGNIVHTLTNRRYMEKTVAYAESHDQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKY-LVDECH 1028 (1276)
Q Consensus 950 ~~~~pi~~l~~~Pi~E~~i~~~~S~~~~~WGYdp~nyf~~d~~~y~~~S~~~Dp~~~~dap~~~yas~s~hkY-t~D~~~ 1028 (1276)
+... ...+. +| .|.+.++|+| +.||++
T Consensus 256 -------------~~~~--~~~g~-----~g--------------------------------~~~~~~yhgY~~~D~~~ 283 (683)
T PRK09505 256 -------------IHGW--VGGGT-----KG--------------------------------DFPHYAYHGYYTLDWTK 283 (683)
T ss_pred -------------cccc--ccccc-----cc--------------------------------CCCcCCCCCCCcccccc
Confidence 0000 00000 00 0111124556 667777
Q ss_pred cCCCCCCHHHHHHHHHHHHHcCCEEEEEEeccccCCccc------CCCcCC-------CCCCCcccc-------------
Q psy9003 1029 KAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVL------DGLNEF-------DGTQACFFH------------- 1082 (1276)
Q Consensus 1029 ID~~~Gt~eEfK~LV~alHk~GI~VILDvV~NHt~~~~~------~~~~~f-------~g~~~~Yy~------------- 1082 (1276)
|||+||+.+|||+||++||++||+||||+|+||++.... ++...+ .+....|+.
T Consensus 284 id~~~Gt~~dfk~Lv~~aH~~Gi~VilD~V~NH~~~~~~~d~~~~~f~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~ 363 (683)
T PRK09505 284 LDANMGTEADLRTLVDEAHQRGIRILFDVVMNHTGYATLADMQEFQFGALYLSGDENKKTLGERWSDWQPAAGQNWHSFN 363 (683)
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCEEEEEECcCCCcccccccccccchhhhhhhccccccccCcccccccccccccccccc
Confidence 889999999999999999999999999999999995321 000000 000011100
Q ss_pred ----cCCCCCCCC-CC-------------------------CcCCCCC-----------------------cHHHHHHHH
Q psy9003 1083 ----DGPRGTHPL-WD-------------------------SRLFNYS-----------------------EIEVLRFLL 1109 (1276)
Q Consensus 1083 ----~~~~g~~~~-W~-------------------------g~~LN~~-----------------------np~Vr~~Ii 1109 (1276)
......... |+ -|+||.+ ||+||++|+
T Consensus 364 ~~~~~~~~~~~~~wwg~~w~~~~~~~~~~~~~~~~~~~l~~LPdl~te~~~~~~lp~f~~~~p~~~~~~~~n~~Vr~yL~ 443 (683)
T PRK09505 364 DYINFSDSTAWDKWWGKDWIRTDIGDYDNPGFDDLTMSLAFLPDIKTESTQASGLPVFYANKPDTRAKAIDGYTPRDYLT 443 (683)
T ss_pred cccccCCccccccccccccccccccccccccccccccccccCCcccccCccccccchhhhcCcccccccccCHHHHHHHH
Confidence 000001111 10 1344443 669999999
Q ss_pred HHHHHHHHhCCCcEEccCCccccccccCCCCCCCCCCCccccCCCCCchHHHHHHHHHHHH-------HhhCCC------
Q psy9003 1110 SNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFL-------HDKYPE------ 1176 (1276)
Q Consensus 1110 dsl~~Wv~eygVDGFRfD~a~~L~~~d~g~g~~~~~~~~~~~~~~~d~~a~~Fl~el~~~V-------r~~~Pd------ 1176 (1276)
+++++|+++|||||||+|++.++. ..||+++++.+ ++.+|+
T Consensus 444 ~~ik~Wv~e~GIDGfRlDaakhV~--------------------------~~FW~~~~~~~~~~l~~~k~~~~d~~~~~~ 497 (683)
T PRK09505 444 HWLSQWVRDYGIDGFRVDTAKHVE--------------------------LPAWQQLKQEASAALAEWKKANPDKALDDA 497 (683)
T ss_pred HHHHHHHHhcCCCEEEEechHhCC--------------------------HHHHHHHHHHHHHHHHHHHHhccccccccC
Confidence 999999999999999999999882 34788887666 345554
Q ss_pred -eEEEEEccCCCCCCccccccCCcccCcccC-CCccchh-hHHHHHHHHHHHHHhccc-CCCCC-eeEeecCCCeEEEEE
Q psy9003 1177 -IITIAEDVSGMPASCRPVTEGGTGFDYRLV-SLEGSAL-SALFDAAMNTTEERFKWL-SADPG-YVSTKHEGDKVIIFE 1251 (1276)
Q Consensus 1177 -vilIAE~~s~~p~~~~p~~~gglGFD~~~n-~lEesaL-S~~F~~~Ln~l~~~~p~L-~~~~~-~~l~nHD~~RVlsf~ 1251 (1276)
+++|||.|...+.. ..+. +.|||..+| .+...+. ...+...+..+.+.++.. ..... .++.|||++|+++..
T Consensus 498 ~~~~vGEvw~~~~~~-~~y~--~~~fDsv~NF~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~FLdNHDt~Rf~s~~ 574 (683)
T PRK09505 498 PFWMTGEAWGHGVMK-SDYY--RHGFDAMINFDYQEQAAKAVDCLAQMDPTYQQMAEKLQDFNVLSYLSSHDTRLFFEGG 574 (683)
T ss_pred CeEEEEEecCCchhh-HHHH--hhcCccccCchHHHHHHHHHHHHHHHHHHHHHHhhhcCccceeecccCCChhhhhhhc
Confidence 89999999765432 2222 257888777 3321111 011223344444433321 11122 367899999998866
Q ss_pred c
Q psy9003 1252 R 1252 (1276)
Q Consensus 1252 R 1252 (1276)
.
T Consensus 575 ~ 575 (683)
T PRK09505 575 Q 575 (683)
T ss_pred C
Confidence 4
|
|
| >PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3 | Back alignment and domain information |
|---|
Probab=99.97 E-value=4e-31 Score=290.46 Aligned_cols=236 Identities=21% Similarity=0.318 Sum_probs=162.9
Q ss_pred CcHHHHHHhhhhHHHHcCCCCCccceeecccccccccccccceeeccCccccccccccccCCCcccCCCccccccccccc
Q psy9003 913 ASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAESHDQALVGDKTIAFWLMDKE 992 (1276)
Q Consensus 913 Gtf~gl~ek~LdyLK~LGVna~d~wV~LmP~f~~eew~~~~pi~~l~~~Pi~E~~i~~~~S~~~~~WGYdp~nyf~~d~~ 992 (1276)
|+|+|++++ |||||+||||+ |||+|+ .+. + ..+|||+|.||+
T Consensus 1 Gd~~gi~~k-Ldyl~~lGv~~----I~l~Pi--------------------~~~--~------~~~~gY~~~d~~----- 42 (316)
T PF00128_consen 1 GDFRGIIDK-LDYLKDLGVNA----IWLSPI--------------------FES--P------NGYHGYDPSDYY----- 42 (316)
T ss_dssp SSHHHHHHT-HHHHHHHTESE----EEESS---------------------EES--S------SSTTTTSESEEE-----
T ss_pred CCHHHHHHh-hHHHHHcCCCc----eecccc--------------------ccc--c------cccccccceeee-----
Confidence 899999997 99999999999 999944 332 1 156999999999
Q ss_pred cccccCCCCCCcccccccccccCCCCCccccccccccCCCCCCHHHHHHHHHHHHHcCCEEEEEEeccccCCcccCCC--
Q psy9003 993 MYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGL-- 1070 (1276)
Q Consensus 993 ~y~~~S~~~Dp~~~~dap~~~yas~s~hkYt~D~~~ID~~~Gt~eEfK~LV~alHk~GI~VILDvV~NHt~~~~~~~~-- 1070 (1276)
+++ |+||+.+|||+||++||++||+||||+|+||++..+.++.
T Consensus 43 ----------------~vd-------------------~~~Gt~~d~~~Lv~~~h~~gi~VilD~V~NH~~~~~~~~~~~ 87 (316)
T PF00128_consen 43 ----------------AVD-------------------PRFGTMEDFKELVDAAHKRGIKVILDVVPNHTSDDHPWFQDS 87 (316)
T ss_dssp ----------------EES-------------------TTTBHHHHHHHHHHHHHHTTCEEEEEEETSEEETTSHHHHHH
T ss_pred ----------------ccc-------------------cccchhhhhhhhhhccccccceEEEeeecccccccccccccc
Confidence 444 9999999999999999999999999999999999987631
Q ss_pred -cCCCCCCCccccc-----CCCC------CCC------------CCC-CcCCCCCcHHHHHHHHHHHHHHHHhCCCcEEc
Q psy9003 1071 -NEFDGTQACFFHD-----GPRG------THP------------LWD-SRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFR 1125 (1276)
Q Consensus 1071 -~~f~g~~~~Yy~~-----~~~g------~~~------------~W~-g~~LN~~np~Vr~~Iidsl~~Wv~eygVDGFR 1125 (1276)
..+....+.||.. .+++ ... .|. .++||+++|+||++|++++++|+++ +|||||
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~n~~v~~~i~~~~~~w~~~-giDGfR 166 (316)
T PF00128_consen 88 LNYFDNPYSDYYYWRDGEGSPPGNWYSYFGGSNWEYDDWGDEYQFWSDLPDLNYENPEVREYIIDVLKFWIEE-GIDGFR 166 (316)
T ss_dssp HTHTTSTTGTTBEEESBTSTTSSTBBCSTTTSSEESCHHTHCHSSSTTSEEBETTSHHHHHHHHHHHHHHHHT-TESEEE
T ss_pred ccccccccccceeecccccccccccccccccccccccccccccccccccchhhhhhhhhhhhhcccccchhhc-eEeEEE
Confidence 1122222333321 0110 011 121 3789999999999999999999995 699999
Q ss_pred cCCccccccccCCCCCCCCCCCccccCCCCCchHHHHHHHHHHHHHhhCCCeEEEEEccCCCCCCccccc-cCCcccCcc
Q psy9003 1126 FDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVT-EGGTGFDYR 1204 (1276)
Q Consensus 1126 fD~a~~L~~~d~g~g~~~~~~~~~~~~~~~d~~a~~Fl~el~~~Vr~~~PdvilIAE~~s~~p~~~~p~~-~gglGFD~~ 1204 (1276)
||++.+|. ..||+++++.+++..|+.++|||.|.......+... .+..+.+..
T Consensus 167 ~D~~~~~~--------------------------~~~~~~~~~~~~~~~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~ 220 (316)
T PF00128_consen 167 LDAAKHIP--------------------------KEFWKEFRDEVKEEKPDFFLIGEVWGGDNEDLRQYAYDGYFDLDSV 220 (316)
T ss_dssp ETTGGGSS--------------------------HHHHHHHHHHHHHHHTTSEEEEEESSSSHHHHHHHHHHGTTSHSEE
T ss_pred Eccccccc--------------------------hhhHHHHhhhhhhhccccceeeeeccCCccccchhhhccccccchh
Confidence 99999883 259999999999999999999998876543221111 111121111
Q ss_pred cC----CCccc--------hh-hHHHHHHHHHHHHHhcccCCCCCeeEeecCCCeEEE
Q psy9003 1205 LV----SLEGS--------AL-SALFDAAMNTTEERFKWLSADPGYVSTKHEGDKVII 1249 (1276)
Q Consensus 1205 ~n----~lEes--------aL-S~~F~~~Ln~l~~~~p~L~~~~~~~l~nHD~~RVls 1249 (1276)
++ .+..+ .. ...+...+......++. .....+++.|||++|+.+
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~f~~nHD~~r~~~ 277 (316)
T PF00128_consen 221 FDFPDYGLRSSFFDFWRHGDGDASDLANWLSSWQSSYPD-PYRAVNFLENHDTPRFAS 277 (316)
T ss_dssp EHHHHHHHHHHHHHHHTTTSSHHHHHHHHHHHHHHHSTT-GGGEEEESSHTTSSTHHH
T ss_pred hcccccccccchhhhhccccchhhhhhhhhhhhhhhhcc-cceeeecccccccccchh
Confidence 11 00000 00 13445555555555553 223346678999999644
|
2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A .... |
| >PRK09441 cytoplasmic alpha-amylase; Reviewed | Back alignment and domain information |
|---|
Probab=99.96 E-value=4e-29 Score=298.36 Aligned_cols=206 Identities=21% Similarity=0.299 Sum_probs=147.5
Q ss_pred CcHHHHHHhhhhHHHHcCCCCCccceeecccccccccccccceeeccCccccccccccccCCCcccCCCccccccccccc
Q psy9003 913 ASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAESHDQALVGDKTIAFWLMDKE 992 (1276)
Q Consensus 913 Gtf~gl~ek~LdyLK~LGVna~d~wV~LmP~f~~eew~~~~pi~~l~~~Pi~E~~i~~~~S~~~~~WGYdp~nyf~~d~~ 992 (1276)
.+|++++++ ||||++||||+ |||+|++ +. + + ...+|||++.|||
T Consensus 19 ~~~~~I~~k-ldyl~~LGvta----Iwl~P~~--------------------~~--~---~-~~~~hgY~~~D~~----- 62 (479)
T PRK09441 19 KLWNRLAER-APELAEAGITA----VWLPPAY--------------------KG--T---S-GGYDVGYGVYDLF----- 62 (479)
T ss_pred cHHHHHHHH-HHHHHHcCCCE----EEeCCCc--------------------cC--C---C-CCCCCCCCeeccc-----
Confidence 467899997 99999999999 9999544 32 1 1 2356999999999
Q ss_pred cccccCCCCCCcccccccccccCCCCCccccccccccCCCCCCHHHHHHHHHHHHHcCCEEEEEEeccccCCccc--CCC
Q psy9003 993 MYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVL--DGL 1070 (1276)
Q Consensus 993 ~y~~~S~~~Dp~~~~dap~~~yas~s~hkYt~D~~~ID~~~Gt~eEfK~LV~alHk~GI~VILDvV~NHt~~~~~--~~~ 1070 (1276)
... .|..+ -+|||+||+.+|||+||++||++||+||+|+|+||++.... |+.
T Consensus 63 ----------------~~~-~~~~~---------~~id~~fGt~~dl~~Li~~~H~~Gi~vi~D~V~NH~~~~~~~~~~~ 116 (479)
T PRK09441 63 ----------------DLG-EFDQK---------GTVRTKYGTKEELLNAIDALHENGIKVYADVVLNHKAGADEKETFR 116 (479)
T ss_pred ----------------ccc-ccccc---------CCcCcCcCCHHHHHHHHHHHHHCCCEEEEEECcccccCCCcceeee
Confidence 221 01100 14789999999999999999999999999999999986432 211
Q ss_pred ----------------------cCC--CCCCC-------cccccCCC---------------CCCCCCC-----------
Q psy9003 1071 ----------------------NEF--DGTQA-------CFFHDGPR---------------GTHPLWD----------- 1093 (1276)
Q Consensus 1071 ----------------------~~f--~g~~~-------~Yy~~~~~---------------g~~~~W~----------- 1093 (1276)
..| .+..+ .|+...+. +....|.
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~ 196 (479)
T PRK09441 117 VVEVDPDDRTQIISEPYEIEGWTRFTFPGRGGKYSDFKWHWYHFSGTDYDENPDESGIFKIVGDGKGWDDQVDDENGNFD 196 (479)
T ss_pred eeeeCccccccccCCceeecccccccCCCCCCcCCcceeCCcCCCCcccccccCcCceEEecCCCCCCccccccccCCcc
Confidence 001 11100 12221110 0112342
Q ss_pred ---CcCCCCCcHHHHHHHHHHHHHHHHhCCCcEEccCCccccccccCCCCCCCCCCCccccCCCCCchHHHHHHHHHHHH
Q psy9003 1094 ---SRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFL 1170 (1276)
Q Consensus 1094 ---g~~LN~~np~Vr~~Iidsl~~Wv~eygVDGFRfD~a~~L~~~d~g~g~~~~~~~~~~~~~~~d~~a~~Fl~el~~~V 1170 (1276)
.++||++||+||++|++++++|++++||||||+|++.+|. ..||+.+.+.+
T Consensus 197 ~~~lpDLn~~np~V~~~l~~~~~~w~~~~giDGfRlDavk~v~--------------------------~~f~~~~~~~~ 250 (479)
T PRK09441 197 YLMGADIDFRHPEVREELKYWAKWYMETTGFDGFRLDAVKHID--------------------------AWFIKEWIEHV 250 (479)
T ss_pred cccccccccCCHHHHHHHHHHHHHHHHhcCCCEEEEhhhcCCC--------------------------HHHHHHHHHHH
Confidence 3699999999999999999999999999999999999882 34899999999
Q ss_pred HhhC-CCeEEEEEccCCCCCCccccccC----CcccCcccC
Q psy9003 1171 HDKY-PEIITIAEDVSGMPASCRPVTEG----GTGFDYRLV 1206 (1276)
Q Consensus 1171 r~~~-PdvilIAE~~s~~p~~~~p~~~g----glGFD~~~n 1206 (1276)
++.. |++++|||.|.+.+.....+..+ ...|||.++
T Consensus 251 ~~~~~~~~~~vGE~~~~~~~~~~~y~~~~~~~~~~~Df~~~ 291 (479)
T PRK09441 251 REVAGKDLFIVGEYWSHDVDKLQDYLEQVEGKTDLFDVPLH 291 (479)
T ss_pred HHhcCCCeEEEEeecCCChHHHHHHHHhcCCCceEecHHHH
Confidence 8776 69999999998876544444321 235776655
|
|
| >COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.4e-29 Score=300.61 Aligned_cols=122 Identities=30% Similarity=0.429 Sum_probs=114.1
Q ss_pred hHHHhhccceEecCC--cEEEEEEccCCceEEEEeecc-CCCcce---------EEEEEccCccccceEEEEEecCCC--
Q psy9003 59 TTSYNKYGIHVQADN--SVRCFEWAPSAQQLYLTGNVS-LTPWSI---------MEEASLSSIKLIQSIQYILTGVFG-- 124 (1276)
Q Consensus 59 s~~y~~fGah~~~~g--g~~f~~wAP~A~~v~l~gdfn-~~~w~m---------~~~~~~~~~~~g~~yky~i~~~~g-- 124 (1276)
.+.|+.||||..+.| |++|++|||+|+.|+|+|||| |....| +|++|||++.+|+.|||+|.+.+|
T Consensus 20 ~~~~~~~GA~~~~~g~~~~~F~vWAP~a~~V~vvgdfn~w~~~~~~~~~~~~~G~we~~vp~~~~G~~Yky~l~~~~g~~ 99 (628)
T COG0296 20 LRLYEKLGAHPIENGVSGVRFRVWAPNARRVSLVGDFNDWDGRRMPMRDRKESGIWELFVPGAPPGTRYKYELIDPSGQL 99 (628)
T ss_pred hhhHhhhCcccccCCCCceEEEEECCCCCeEEEEeecCCccceecccccCCCCceEEEeccCCCCCCeEEEEEeCCCCce
Confidence 367999999977757 899999999999999999995 555444 999999999999999999999998
Q ss_pred -------------CCCccccccc--------------------------ccccccC-----CChHHHHHHHHHHHHhcCc
Q psy9003 125 -------------TPEQLKYLVD--------------------------ECHKAGL-----FGTPEQLKYLVDECHKAGL 160 (1276)
Q Consensus 125 -------------rp~~as~~~d--------------------------e~h~gs~-----~~y~e~a~~li~y~~~~~y 160 (1276)
||.|||+|+| |+|+||| ++|.|+|++|+||||||||
T Consensus 100 ~~~~DP~a~~~~~~p~~aS~v~~~~~y~W~d~~~~~~~~~~~~e~~vIYElHvGs~~~~~~~~~~e~a~~llpYl~elG~ 179 (628)
T COG0296 100 RLKADPYARRQEVGPHTASQVVDLPDYEWQDERWDRAWRGRFWEPIVIYELHVGSFTPDRFLGYFELAIELLPYLKELGI 179 (628)
T ss_pred eeccCchhhccCCCCCCcceecCCCCcccccccccccccCCCCCCceEEEEEeeeccCCCCcCHHHHHHHHhHHHHHhCC
Confidence 9999999999 9999998 8999999999999999999
Q ss_pred ------------------------------CCCHHHHHHHHHHHHHcCCC
Q psy9003 161 ------------------------------FGTPEQLKYLVDECHKAGLF 180 (1276)
Q Consensus 161 ------------------------------ygtp~~l~~~vd~~h~~~i~ 180 (1276)
||||+|||+|||+|||+||-
T Consensus 180 T~IELMPv~e~p~~~sWGYq~~g~yAp~sryGtPedfk~fVD~aH~~GIg 229 (628)
T COG0296 180 THIELMPVAEHPGDRSWGYQGTGYYAPTSRYGTPEDFKALVDAAHQAGIG 229 (628)
T ss_pred CEEEEcccccCCCCCCCCCCcceeccccccCCCHHHHHHHHHHHHHcCCE
Confidence 99999999999999999996
|
|
| >PLN00196 alpha-amylase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.1e-25 Score=264.89 Aligned_cols=186 Identities=19% Similarity=0.214 Sum_probs=133.2
Q ss_pred CceEEEEecC-CccccCccCcHHHHHHhhhhHHHHcCCCCCccceeecccccccccccccceeeccCccccccccccccC
Q psy9003 895 NLKIYESHVG-ICTQEQKCASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAES 973 (1276)
Q Consensus 895 d~vIYElHVr-~ft~~~~~Gtf~gl~ek~LdyLK~LGVna~d~wV~LmP~f~~eew~~~~pi~~l~~~Pi~E~~i~~~~S 973 (1276)
+-+|.|.+-- ++ ....|.|++++++ ||||++||||+ |||+|++ +.
T Consensus 24 ~~v~~Q~F~W~~~--~~~gg~~~~i~~k-ldyL~~LGvta----IWL~P~~--------------------~s------- 69 (428)
T PLN00196 24 GQVLFQGFNWESW--KQNGGWYNFLMGK-VDDIAAAGITH----VWLPPPS--------------------HS------- 69 (428)
T ss_pred CCEEEEeeccCCC--CCCCcCHHHHHHH-HHHHHHcCCCE----EEeCCCC--------------------CC-------
Confidence 4466665441 12 2345789999986 99999999999 9999433 21
Q ss_pred CCcccCCCccccccccccccccccCCCCCCcccccccccccCCCCCccccccccccC-CCCCCHHHHHHHHHHHHHcCCE
Q psy9003 974 HDQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKA-GLFGTPEQLKYLVDECHKAGLY 1052 (1276)
Q Consensus 974 ~~~~~WGYdp~nyf~~d~~~y~~~S~~~Dp~~~~dap~~~yas~s~hkYt~D~~~ID-~~~Gt~eEfK~LV~alHk~GI~ 1052 (1276)
..++||+|.||| . +| ++||+.+|||+||++||++||+
T Consensus 70 --~s~hGY~~~D~y---------------------~-------------------ld~~~fGt~~elk~Lv~~aH~~GIk 107 (428)
T PLN00196 70 --VSEQGYMPGRLY---------------------D-------------------LDASKYGNEAQLKSLIEAFHGKGVQ 107 (428)
T ss_pred --CCCCCCCccccC---------------------C-------------------CCcccCCCHHHHHHHHHHHHHCCCE
Confidence 124789888888 2 33 5899999999999999999999
Q ss_pred EEEEEeccccCCcccCCC---cCCCCCC----Cccccc----C------CCCCCCCC----CCcCCCCCcHHHHHHHHHH
Q psy9003 1053 VLLDVVHSHASKNVLDGL---NEFDGTQ----ACFFHD----G------PRGTHPLW----DSRLFNYSEIEVLRFLLSN 1111 (1276)
Q Consensus 1053 VILDvV~NHt~~~~~~~~---~~f~g~~----~~Yy~~----~------~~g~~~~W----~g~~LN~~np~Vr~~Iids 1111 (1276)
||+|+|+||++.++..+. ..|.+.. ..||.. + ..+.+..| ..++||++||+||++|+++
T Consensus 108 VilDvV~NH~~~~~~~~~~~y~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~lpDLn~~np~V~~~l~~~ 187 (428)
T PLN00196 108 VIADIVINHRTAEHKDGRGIYCLFEGGTPDSRLDWGPHMICRDDTQYSDGTGNLDTGADFAAAPDIDHLNKRVQRELIGW 187 (428)
T ss_pred EEEEECccCcccccccCCCceEECCCCCCCCccccccccCCCCcccccCCCCceeCCCCCCCCCccCCCCHHHHHHHHHH
Confidence 999999999997654321 1122211 123211 0 01111111 1489999999999999999
Q ss_pred HHHHHHhCCCcEEccCCccccccccCCCCCCCCCCCccccCCCCCchHHHHHHHHHHHHHhhCCCeEEEEEccCC
Q psy9003 1112 LRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSG 1186 (1276)
Q Consensus 1112 l~~Wv~eygVDGFRfD~a~~L~~~d~g~g~~~~~~~~~~~~~~~d~~a~~Fl~el~~~Vr~~~PdvilIAE~~s~ 1186 (1276)
++||++++||||||||++.++. ..|++++ +++.+| .++|||.|.+
T Consensus 188 ~~wl~~~~GiDG~RlD~ak~~~--------------------------~~f~~~~---v~~~~p-~f~VGE~W~~ 232 (428)
T PLN00196 188 LLWLKSDIGFDAWRLDFAKGYS--------------------------AEVAKVY---IDGTEP-SFAVAEIWTS 232 (428)
T ss_pred HHHHhhCCCCCEEEeehhhhCC--------------------------HHHHHHH---HHccCC-cEEEEEEecc
Confidence 9999889999999999998772 2366654 556667 7899999976
|
|
| >PRK14705 glycogen branching enzyme; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=8.9e-26 Score=288.51 Aligned_cols=123 Identities=27% Similarity=0.441 Sum_probs=112.2
Q ss_pred hhHHHhhccceEec-C----C--cEEEEEEccCCceEEEEeecc-CCCcc--e-------EEEEEccCccccceEEEEEe
Q psy9003 58 FTTSYNKYGIHVQA-D----N--SVRCFEWAPSAQQLYLTGNVS-LTPWS--I-------MEEASLSSIKLIQSIQYILT 120 (1276)
Q Consensus 58 Fs~~y~~fGah~~~-~----g--g~~f~~wAP~A~~v~l~gdfn-~~~w~--m-------~~~~~~~~~~~g~~yky~i~ 120 (1276)
-.++|++||||+.. + | ||+|+||||+|++|+|+|||| |+.-. | ||++|||++++|+.|||+|.
T Consensus 616 ~~~~y~~lGah~~~~~~~~~~~~Gv~F~VWAP~A~~V~vvgdFN~w~~~~~~m~~~~~~GvW~~fipg~~~G~~Yky~i~ 695 (1224)
T PRK14705 616 HEKLWDVLGAHVQHYKSSLGDVDGVSFAVWAPNAQAVRVKGDFNGWDGREHSMRSLGSSGVWELFIPGVVAGACYKFEIL 695 (1224)
T ss_pred hhhHHHhcCCeEeeccCccCCCCeEEEEEECCCCCEEEEEEEecCCCCCcccceECCCCCEEEEEECCCCCCCEEEEEEE
Confidence 34789999999765 3 4 999999999999999999995 43322 5 99999999999999999999
Q ss_pred cCCC---------------CCCccccccc---------------------------ccccccC---CChHHHHHHHHHHH
Q psy9003 121 GVFG---------------TPEQLKYLVD---------------------------ECHKAGL---FGTPEQLKYLVDEC 155 (1276)
Q Consensus 121 ~~~g---------------rp~~as~~~d---------------------------e~h~gs~---~~y~e~a~~li~y~ 155 (1276)
+.+| +|.+||+|+| |+|+||| ++|+|++++||||+
T Consensus 696 ~~~g~~~~k~DPyA~~~e~~p~~aS~V~d~~~~w~d~~W~~~r~~~~~~~~p~~IYEvHvgsf~~~~~~~~l~~~lldYl 775 (1224)
T PRK14705 696 TKAGQWVEKADPLAFGTEVPPLTASRVVEASYAFKDAEWMSARAERDPHNSPMSVYEVHLGSWRLGLGYRELAKELVDYV 775 (1224)
T ss_pred cCCCcEEecCCccccccccCCCCCeEEeCCCCCcCChhhhhccccCCCCcCCcEEEEEEecccccCCchHHHHHHHHHHH
Confidence 9877 8999999998 9999996 79999999999999
Q ss_pred HhcCc------------------------------CCCHHHHHHHHHHHHHcCCC
Q psy9003 156 HKAGL------------------------------FGTPEQLKYLVDECHKAGLF 180 (1276)
Q Consensus 156 ~~~~y------------------------------ygtp~~l~~~vd~~h~~~i~ 180 (1276)
|+||| ||||+|||+|||+||++||.
T Consensus 776 k~LGvt~IeLmPv~e~p~~~swGY~~~~y~ap~~ryGt~~dfk~lVd~~H~~GI~ 830 (1224)
T PRK14705 776 KWLGFTHVEFMPVAEHPFGGSWGYQVTSYFAPTSRFGHPDEFRFLVDSLHQAGIG 830 (1224)
T ss_pred HHhCCCEEEECccccCCCCCCCCCCccccCCcCcccCCHHHHHHHHHHHHHCCCE
Confidence 99999 99999999999999999998
|
|
| >PRK12568 glycogen branching enzyme; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.1e-25 Score=276.40 Aligned_cols=120 Identities=25% Similarity=0.453 Sum_probs=111.6
Q ss_pred hHHHhhccceEec-CC--cEEEEEEccCCceEEEEeeccCCCcc-----e------EEEEEccCccccceEEEEEecCCC
Q psy9003 59 TTSYNKYGIHVQA-DN--SVRCFEWAPSAQQLYLTGNVSLTPWS-----I------MEEASLSSIKLIQSIQYILTGVFG 124 (1276)
Q Consensus 59 s~~y~~fGah~~~-~g--g~~f~~wAP~A~~v~l~gdfn~~~w~-----m------~~~~~~~~~~~g~~yky~i~~~~g 124 (1276)
.++|++||||+.. +| ||+|+||||+|++|+|+||| |+|+ | ||++|||++++|+.|||+|.+.+|
T Consensus 121 ~~~y~~lGah~~~~~g~~Gv~FaVWAPnA~~VsVvGDF--N~Wdg~~~pM~~~~~GVWelfipg~~~G~~YKYeI~~~~G 198 (730)
T PRK12568 121 QALRRALGAQHVQVGEVPGVRFAVWAPHAQRVAVVGDF--NGWDVRRHPMRQRIGGFWELFLPRVEAGARYKYAITAADG 198 (730)
T ss_pred hhhHHhcCCeEeeECCCCcEEEEEECCCCCEEEEEEec--CCCCccceecccCCCCEEEEEECCCCCCCEEEEEEEcCCC
Confidence 4799999999776 66 99999999999999999999 5555 6 999999999999999999998877
Q ss_pred ---------------CCCccccccc---------------------------cccccc--------CCChHHHHHHHHHH
Q psy9003 125 ---------------TPEQLKYLVD---------------------------ECHKAG--------LFGTPEQLKYLVDE 154 (1276)
Q Consensus 125 ---------------rp~~as~~~d---------------------------e~h~gs--------~~~y~e~a~~li~y 154 (1276)
||.|||+|.| |||+|| +++|+++|++||||
T Consensus 199 ~~~~k~DPYA~~~e~~p~~asvV~~~~~~~W~d~~W~~~r~~~~~~~~~~IYEvHvgsf~~~~~~~~~~~~~la~~ll~y 278 (730)
T PRK12568 199 RVLLKADPVARQTELPPATASVVPSAAAFAWTDAAWMARRDPAAVPAPLSIYEVHAASWRRDGHNQPLDWPTLAEQLIPY 278 (730)
T ss_pred eEeecCCCcceEeecCCCCCeEEcCCCCCCCCChhhhhcccccCCCCCcEEEEEEhHHhcCCCCCCCCCHHHHHHHHHHH
Confidence 8999999986 999999 57899999999999
Q ss_pred HHhcCc------------------------------CCCHHHHHHHHHHHHHcCCC
Q psy9003 155 CHKAGL------------------------------FGTPEQLKYLVDECHKAGLF 180 (1276)
Q Consensus 155 ~~~~~y------------------------------ygtp~~l~~~vd~~h~~~i~ 180 (1276)
||++|+ ||||+||++|||+||++||+
T Consensus 279 lk~LGvt~I~LmPi~e~~~~~~wGY~~~~~~a~~~~~G~~~dfk~lV~~~H~~Gi~ 334 (730)
T PRK12568 279 VQQLGFTHIELLPITEHPFGGSWGYQPLGLYAPTARHGSPDGFAQFVDACHRAGIG 334 (730)
T ss_pred HHHcCCCEEEECccccCCCCCCCCCCCCcCCccCcccCCHHHHHHHHHHHHHCCCE
Confidence 999999 89999999999999999998
|
|
| >PLN02361 alpha-amylase | Back alignment and domain information |
|---|
Probab=99.92 E-value=9.6e-25 Score=254.83 Aligned_cols=169 Identities=17% Similarity=0.257 Sum_probs=124.5
Q ss_pred cHHHHHHhhhhHHHHcCCCCCccceeecccccccccccccceeeccCccccccccccccCCCcccCCCcccccccccccc
Q psy9003 914 SYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAESHDQALVGDKTIAFWLMDKEM 993 (1276)
Q Consensus 914 tf~gl~ek~LdyLK~LGVna~d~wV~LmP~f~~eew~~~~pi~~l~~~Pi~E~~i~~~~S~~~~~WGYdp~nyf~~d~~~ 993 (1276)
-|++++++ ||||++||||+ |||+|++ +. ..++||+|.|||
T Consensus 27 ~w~~i~~k-l~~l~~lG~t~----iwl~P~~--------------------~~---------~~~~GY~~~d~y------ 66 (401)
T PLN02361 27 WWRNLEGK-VPDLAKSGFTS----AWLPPPS--------------------QS---------LAPEGYLPQNLY------ 66 (401)
T ss_pred HHHHHHHH-HHHHHHcCCCE----EEeCCCC--------------------cC---------CCCCCCCccccc------
Confidence 67899986 99999999999 9999433 21 123799998888
Q ss_pred ccccCCCCCCcccccccccccCCCCCccccccccccCCCCCCHHHHHHHHHHHHHcCCEEEEEEeccccCCcccC--C-C
Q psy9003 994 YTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLD--G-L 1070 (1276)
Q Consensus 994 y~~~S~~~Dp~~~~dap~~~yas~s~hkYt~D~~~ID~~~Gt~eEfK~LV~alHk~GI~VILDvV~NHt~~~~~~--~-~ 1070 (1276)
.+ |++||+.+||++||++||++||+||+|+|+||++..... + .
T Consensus 67 ---------------~~-------------------~~~~Gt~~el~~li~~~h~~gi~vi~D~V~NH~~g~~~~~~~~y 112 (401)
T PLN02361 67 ---------------SL-------------------NSAYGSEHLLKSLLRKMKQYNVRAMADIVINHRVGTTQGHGGMY 112 (401)
T ss_pred ---------------cc-------------------CcccCCHHHHHHHHHHHHHcCCEEEEEEccccccCCCCCCCCCc
Confidence 33 389999999999999999999999999999999643211 1 1
Q ss_pred cCCCCCCCccc-----cc-CCCCCCC---CCC-CcCCCCCcHHHHHHHHHHHHHHHHhCCCcEEccCCccccccccCCCC
Q psy9003 1071 NEFDGTQACFF-----HD-GPRGTHP---LWD-SRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCG 1140 (1276)
Q Consensus 1071 ~~f~g~~~~Yy-----~~-~~~g~~~---~W~-g~~LN~~np~Vr~~Iidsl~~Wv~eygVDGFRfD~a~~L~~~d~g~g 1140 (1276)
..|.+....|. .. ...+... ++. .++||++||.||++|++++++|++++||||||+|++.++.
T Consensus 113 ~~~~g~~~~wd~~~~~~~~~g~~~~~~~~~~~~lpDLd~~np~Vr~~l~~~~~wl~~~~GiDGfRlDavk~~~------- 185 (401)
T PLN02361 113 NRYDGIPLPWDEHAVTSCTGGLGNRSTGDNFNGVPNIDHTQHFVRKDIIGWLIWLRNDVGFQDFRFDFAKGYS------- 185 (401)
T ss_pred ccCCCCcCCCCccccccccCCCCCccCCCCCccCCccCCCCHHHHHHHHHHHHHHHhcCCCCEEEEeccccCC-------
Confidence 12333211111 11 0001111 111 4899999999999999999877778999999999999882
Q ss_pred CCCCCCCccccCCCCCchHHHHHHHHHHHHHhhCCCeEEEEEccCC
Q psy9003 1141 EGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSG 1186 (1276)
Q Consensus 1141 ~~~~~~~~~~~~~~~d~~a~~Fl~el~~~Vr~~~PdvilIAE~~s~ 1186 (1276)
..||+++.+.+ .| .+++||.|.+
T Consensus 186 -------------------~~f~~~~~~~~---~p-~f~VGE~w~~ 208 (401)
T PLN02361 186 -------------------AKFVKEYIEAA---KP-LFSVGEYWDS 208 (401)
T ss_pred -------------------HHHHHHHHHhh---CC-eEEEEEEecC
Confidence 34888886543 45 8899999976
|
|
| >PRK14706 glycogen branching enzyme; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=6.2e-24 Score=260.66 Aligned_cols=122 Identities=25% Similarity=0.409 Sum_probs=111.2
Q ss_pred hHHHhhccceEec-CC--cEEEEEEccCCceEEEEeecc-CCCcc--e------EEEEEccCccccceEEEEEecCCC--
Q psy9003 59 TTSYNKYGIHVQA-DN--SVRCFEWAPSAQQLYLTGNVS-LTPWS--I------MEEASLSSIKLIQSIQYILTGVFG-- 124 (1276)
Q Consensus 59 s~~y~~fGah~~~-~g--g~~f~~wAP~A~~v~l~gdfn-~~~w~--m------~~~~~~~~~~~g~~yky~i~~~~g-- 124 (1276)
.+.|++||||+.. +| |++||||||+|++|+|+|||| |+... | +|++|||+++.|+.|||+|.+++|
T Consensus 21 ~~~~~~lGah~~~~~~~~Gv~FrvwAP~A~~V~Lvgdfn~w~~~~~pM~~~~~GvW~~~vpg~~~g~~Yky~I~~~~g~~ 100 (639)
T PRK14706 21 VRPDHLLGAHPATEGGVEGVRFAVWAPGAQHVSVVGDFNDWNGFDHPMQRLDFGFWGAFVPGARPGQRYKFRVTGAAGQT 100 (639)
T ss_pred cchhHhcCccCccCCCcccEEEEEECCCCCEEEEEEecCCcccccccccccCCCEEEEEECCCCCCCEEEEEEECCCCCE
Confidence 3689999999777 45 899999999999999999995 53333 5 999999999999999999999876
Q ss_pred -------------CCCccccccc-------------------------cccccc--------CCChHHHHHHHHHHHHhc
Q psy9003 125 -------------TPEQLKYLVD-------------------------ECHKAG--------LFGTPEQLKYLVDECHKA 158 (1276)
Q Consensus 125 -------------rp~~as~~~d-------------------------e~h~gs--------~~~y~e~a~~li~y~~~~ 158 (1276)
+|++||+|+| |||+|| |+||+|++++||||+|+|
T Consensus 101 ~~~~DPYa~~~~~~~~~~svv~~~~~~w~d~~w~~~~~~~~~~~~~IYE~Hvg~f~~~~~g~~~ty~~~~~~l~~ylk~l 180 (639)
T PRK14706 101 VDKMDPYGSFFEVRPNTASIIWEDRFEWTDTRWMSSRTAGFDQPISIYEVHVGSWARRDDGWFLNYRELAHRLGEYVTYM 180 (639)
T ss_pred EeccCcceEEEecCCCCceEECCCCCCCCCcccccccCCccCCCcEEEEEehhhcccCCCCCccCHHHHHHHHHHHHHHc
Confidence 8999999965 999999 479999999999999999
Q ss_pred Cc------------------------------CCCHHHHHHHHHHHHHcCCC
Q psy9003 159 GL------------------------------FGTPEQLKYLVDECHKAGLF 180 (1276)
Q Consensus 159 ~y------------------------------ygtp~~l~~~vd~~h~~~i~ 180 (1276)
|| ||||+||++|||+||++||+
T Consensus 181 G~t~velmPv~e~~~~~~wGY~~~~~~~~~~~~g~~~~~~~lv~~~H~~gi~ 232 (639)
T PRK14706 181 GYTHVELLGVMEHPFDGSWGYQVTGYYAPTSRLGTPEDFKYLVNHLHGLGIG 232 (639)
T ss_pred CCCEEEccchhcCCCCCCCCcCcccccccccccCCHHHHHHHHHHHHHCCCE
Confidence 99 99999999999999999998
|
|
| >PLN02960 alpha-amylase | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.5e-23 Score=258.44 Aligned_cols=68 Identities=19% Similarity=0.399 Sum_probs=64.9
Q ss_pred CCccHHHHHHHHHHHHHHHHHHhhccCchHHhhHHHhhccceEecCCcEEEEEEccCCceEEEEeecc
Q psy9003 27 LNPYQYEMKRRYGLMVNFLEQFEKHEGGIEKFTTSYNKYGIHVQADNSVRCFEWAPSAQQLYLTGNVS 94 (1276)
Q Consensus 27 L~~~~~~~~~Ry~~~~~~~~~i~~~~ggl~~Fs~~y~~fGah~~~~gg~~f~~wAP~A~~v~l~gdfn 94 (1276)
-+-|+..++.||+.+++.+.+|.+++|||+.||++|++||+|+....||+|+||||+|+.++|+||||
T Consensus 82 ~~~f~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~e~~g~~~~~~~~~~~~~wap~a~~~~~~gdfn 149 (897)
T PLN02960 82 DRAFAQFLRERHKALKDLKWEIFKRHIDLKEFASGFELLGMHRHPEHRVDFMEWAPGARYCSLVGDFN 149 (897)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHhhHHHHhccccCcccCeEEEEEcCCceeEEEeeccc
Confidence 36799999999999999999999999999999999999999999965799999999999999999995
|
|
| >COG0366 AmyA Glycosidases [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.90 E-value=9.9e-23 Score=241.31 Aligned_cols=164 Identities=24% Similarity=0.311 Sum_probs=126.4
Q ss_pred ceEEEEecCCcccc--------CccCcHHHHHHhhhhHHHHcCCCCCccceeecccccccccccccceeeccCccccccc
Q psy9003 896 LKIYESHVGICTQE--------QKCASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKT 967 (1276)
Q Consensus 896 ~vIYElHVr~ft~~--------~~~Gtf~gl~ek~LdyLK~LGVna~d~wV~LmP~f~~eew~~~~pi~~l~~~Pi~E~~ 967 (1276)
++||++.++.|... .+.|+++|++++ ||||++|||++ |||+|+|+ .
T Consensus 1 ~viyqi~~~~f~d~~~~~~~~~~G~Gdl~Gi~~~-LdYl~~LGv~a----iwl~Pi~~--------------------s- 54 (505)
T COG0366 1 AVIYQIYPDRFADSNGSNGPDYDGGGDLKGITEK-LDYLKELGVDA----IWLSPIFE--------------------S- 54 (505)
T ss_pred CcEEEEechhhcCCCCCCccCCCCcccHHhHHHh-hhHHHHhCCCE----EEeCCCCC--------------------C-
Confidence 48999999999753 235999999986 99999999999 99995543 1
Q ss_pred cccccCCCcccCCCccccccccccccccccCCCCCCcccccccccccCCCCCccccccccccCCCCCCHHHHHHHHHHHH
Q psy9003 968 VAYAESHDQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECH 1047 (1276)
Q Consensus 968 i~~~~S~~~~~WGYdp~nyf~~d~~~y~~~S~~~Dp~~~~dap~~~yas~s~hkYt~D~~~ID~~~Gt~eEfK~LV~alH 1047 (1276)
...+.||++.||+ +|||.+|+.++|++||+++|
T Consensus 55 -------~~~~~gY~~~Dy~----------------------------------------~id~~~Gt~~d~~~li~~~H 87 (505)
T COG0366 55 -------PQADHGYDVSDYT----------------------------------------KVDPHFGTEEDFKELVEEAH 87 (505)
T ss_pred -------CccCCCccccchh----------------------------------------hcCcccCCHHHHHHHHHHHH
Confidence 1345677777776 45589999999999999999
Q ss_pred HcCCEEEEEEeccccCCcccCCCcCCCCCC----Cccccc-C-------C-----CCCCCCCC---------------Cc
Q psy9003 1048 KAGLYVLLDVVHSHASKNVLDGLNEFDGTQ----ACFFHD-G-------P-----RGTHPLWD---------------SR 1095 (1276)
Q Consensus 1048 k~GI~VILDvV~NHt~~~~~~~~~~f~g~~----~~Yy~~-~-------~-----~g~~~~W~---------------g~ 1095 (1276)
++||+||||+|+||++..++|+........ ..||.. . + ......|. .+
T Consensus 88 ~~gi~vi~D~V~NH~s~~~~~f~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (505)
T COG0366 88 KRGIKVILDLVFNHTSDEHPWFKEARSSKPNPKRSDYYIWRDPDPDGTPPNNWFSVFGGDAWTWGNTGEYYLHLFSSEQP 167 (505)
T ss_pred HCCCEEEEEeccCcCCCccHHHHHHhcCCCCcccCCCceEccCcccCCCCCcchhhcCCCCCCcCCCCceEEEecCCCCC
Confidence 999999999999999999977542221111 133321 0 0 00011221 26
Q ss_pred CCCCCcHHHHHHHHHHHHHHHHhCCCcEEccCCccccc
Q psy9003 1096 LFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSML 1133 (1276)
Q Consensus 1096 ~LN~~np~Vr~~Iidsl~~Wv~eygVDGFRfD~a~~L~ 1133 (1276)
+||+.+|+||+.+.++++||++ +||||||+|++.++.
T Consensus 168 dln~~n~~v~~~~~~~~~~W~~-~gvDGfRlDa~~~~~ 204 (505)
T COG0366 168 DLNWENPEVREELLDVVKFWLD-KGVDGFRLDAAKHIS 204 (505)
T ss_pred CcCCCCHHHHHHHHHHHHHHHH-cCCCeEEeccHhhhc
Confidence 7999999999999999999999 799999999999984
|
|
| >PLN02784 alpha-amylase | Back alignment and domain information |
|---|
Probab=99.89 E-value=2e-22 Score=247.53 Aligned_cols=188 Identities=21% Similarity=0.263 Sum_probs=133.2
Q ss_pred CCceEEEEecCCcc-c-cCccCcHHHHHHhhhhHHHHcCCCCCccceeecccccccccccccceeeccCccccccccccc
Q psy9003 894 DNLKIYESHVGICT-Q-EQKCASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYA 971 (1276)
Q Consensus 894 ~d~vIYElHVr~ft-~-~~~~Gtf~gl~ek~LdyLK~LGVna~d~wV~LmP~f~~eew~~~~pi~~l~~~Pi~E~~i~~~ 971 (1276)
.....|++.+..|. . .....-|++++++ +|||++||||+ |||+|. .+.
T Consensus 497 ~~~~~~eVmlQgF~Wds~~dg~w~~~I~ek-ldyL~~LG~ta----IWLpP~--------------------~~s----- 546 (894)
T PLN02784 497 GTGSGFEILCQGFNWESHKSGRWYMELGEK-AAELSSLGFTV----VWLPPP--------------------TES----- 546 (894)
T ss_pred cccCCceEEEEeEEcCcCCCCchHHHHHHH-HHHHHHhCCCE----EEeCCC--------------------CCC-----
Confidence 35668888888875 1 1122237899886 99999999999 999943 321
Q ss_pred cCCCcccCCCccccccccccccccccCCCCCCcccccccccccCCCCCccccccccccCCCCCCHHHHHHHHHHHHHcCC
Q psy9003 972 ESHDQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGL 1051 (1276)
Q Consensus 972 ~S~~~~~WGYdp~nyf~~d~~~y~~~S~~~Dp~~~~dap~~~yas~s~hkYt~D~~~ID~~~Gt~eEfK~LV~alHk~GI 1051 (1276)
..++||+|.||| .++ ++||+.+||++||++||++||
T Consensus 547 ----~s~~GY~p~D~y---------------------~ld-------------------s~yGT~~ELk~LI~a~H~~GI 582 (894)
T PLN02784 547 ----VSPEGYMPKDLY---------------------NLN-------------------SRYGTIDELKDLVKSFHEVGI 582 (894)
T ss_pred ----CCCCCcCccccc---------------------ccC-------------------cCcCCHHHHHHHHHHHHHCCC
Confidence 134899999999 343 899999999999999999999
Q ss_pred EEEEEEeccccCCcccC--CC-cCCCCCCCccccc-----CC----CCC---CCCCC-CcCCCCCcHHHHHHHHHHHHHH
Q psy9003 1052 YVLLDVVHSHASKNVLD--GL-NEFDGTQACFFHD-----GP----RGT---HPLWD-SRLFNYSEIEVLRFLLSNLRWY 1115 (1276)
Q Consensus 1052 ~VILDvV~NHt~~~~~~--~~-~~f~g~~~~Yy~~-----~~----~g~---~~~W~-g~~LN~~np~Vr~~Iidsl~~W 1115 (1276)
+||+|+|+||++..+.. +. ..|.+.. .|... ++ .|. ..+|. .++||++||.||+.|.++++||
T Consensus 583 kVIlDiViNH~ag~f~~~~g~~~~f~g~~-dW~d~~i~~ddp~F~GrG~~~sgddf~~lPDLDh~npeVR~eL~~WlkWL 661 (894)
T PLN02784 583 KVLGDAVLNHRCAHFQNQNGVWNIFGGRL-NWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDLKEWLCWM 661 (894)
T ss_pred EEEEEECcccccccccCCCCcccccCCee-cCCCCcccCCCcccCCcCCcCcccccCcCCcCCCCCHHHHHHHHHHHHHH
Confidence 99999999999865321 11 1122110 01000 00 000 11122 4899999999999999999999
Q ss_pred HHhCCCcEEccCCccccccccCCCCCCCCCCCccccCCCCCchHHHHHHHHHHHHHhhCCCeEEEEEccCC
Q psy9003 1116 LDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSG 1186 (1276)
Q Consensus 1116 v~eygVDGFRfD~a~~L~~~d~g~g~~~~~~~~~~~~~~~d~~a~~Fl~el~~~Vr~~~PdvilIAE~~s~ 1186 (1276)
++++||||||||++.++. ..|+++. +++..| .++|||.|.+
T Consensus 662 ~~e~G~DGfRLDaVKgf~--------------------------~~Fvkey---v~a~kp-~F~VGEyWd~ 702 (894)
T PLN02784 662 RKEVGYDGWRLDFVRGFW--------------------------GGYVKDY---MEASEP-YFAVGEYWDS 702 (894)
T ss_pred HhccCCCEEEEeccCCCC--------------------------HHHHHHH---HhccCC-cEEEEEeccc
Confidence 999999999999987551 1244444 444556 7999999976
|
|
| >PRK13840 sucrose phosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=6e-21 Score=227.17 Aligned_cols=182 Identities=15% Similarity=0.159 Sum_probs=132.5
Q ss_pred cCcHHHHHHhhhh-HHHHcCCCCCccceeecccccccccccccceeeccCccccccccccccCCCcccCCCccccccccc
Q psy9003 912 CASYEDFVRVVIP-RIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAESHDQALVGDKTIAFWLMD 990 (1276)
Q Consensus 912 ~Gtf~gl~ek~Ld-yLK~LGVna~d~wV~LmP~f~~eew~~~~pi~~l~~~Pi~E~~i~~~~S~~~~~WGYdp~nyf~~d 990 (1276)
.|+++|++++ || ||++| |++ |||||.|+ | . +.+..||++.||+
T Consensus 16 ~GdL~gl~~k-Ld~yL~~l-v~~----vhllPff~----------------p-------s----p~sD~GYdv~DY~--- 59 (495)
T PRK13840 16 DGGLKSLTAL-LDGRLDGL-FGG----VHILPFFY----------------P-------I----DGADAGFDPIDHT--- 59 (495)
T ss_pred CCCHhHHHHH-HHHHHHHH-hCe----EEECCCcc----------------C-------C----CCCCCCCCCcChh---
Confidence 3899999996 99 59999 999 99996552 1 1 1234688888887
Q ss_pred cccccccCCCCCCcccccccccccCCCCCccccccccccCCCCCCHHHHHHHHHHHHHcCCEEEEEEeccccCCcccCCC
Q psy9003 991 KEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGL 1070 (1276)
Q Consensus 991 ~~~y~~~S~~~Dp~~~~dap~~~yas~s~hkYt~D~~~ID~~~Gt~eEfK~LV~alHk~GI~VILDvV~NHt~~~~~~~~ 1070 (1276)
+|||+||+.+||++|++ ||+||+|+|+|||+..|+|+.
T Consensus 60 -------------------------------------~VDP~fGt~eDf~~L~~-----giklmlDlV~NHtS~~h~WFq 97 (495)
T PRK13840 60 -------------------------------------KVDPRLGDWDDVKALGK-----THDIMADLIVNHMSAESPQFQ 97 (495)
T ss_pred -------------------------------------hcCcccCCHHHHHHHHh-----CCeEEEEECCCcCCCCcHHHH
Confidence 35599999999999995 999999999999999998865
Q ss_pred cCC-CCCC---Cccccc-C---C---------------CCC-CC-----------CCC-----CcCCCCCcHHHHHHHHH
Q psy9003 1071 NEF-DGTQ---ACFFHD-G---P---------------RGT-HP-----------LWD-----SRLFNYSEIEVLRFLLS 1110 (1276)
Q Consensus 1071 ~~f-~g~~---~~Yy~~-~---~---------------~g~-~~-----------~W~-----g~~LN~~np~Vr~~Iid 1110 (1276)
... .+.. ..||.. + + .+. +. .|. -++||+.||+|+++|.+
T Consensus 98 d~l~~~~~s~Y~D~fi~~d~~~~~~~~~~~~~~if~~~~g~~~~~~~~~~~~~~~~w~tF~~~QpDLN~~NP~V~~~i~~ 177 (495)
T PRK13840 98 DVLAKGEASEYWPMFLTKDKVFPDGATEEDLAGIYRPRPGLPFTTYTLADGKTRLVWTTFTPQQIDIDVHSAAGWEYLMS 177 (495)
T ss_pred HHHHhCCCCCccCeEEECCCCCcCCCCCcccccccCCCCCCcccceEecCCCceEEeccCCcccceeCCCCHHHHHHHHH
Confidence 322 1111 233421 1 0 011 11 122 28899999999999999
Q ss_pred HHHHHHHhCCCcEEccCCccccccccCCCCCCCCCCCccccCCCCCchHHHHHHHHHHHHHhhCCCeEEEEEccCCC
Q psy9003 1111 NLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGM 1187 (1276)
Q Consensus 1111 sl~~Wv~eygVDGFRfD~a~~L~~~d~g~g~~~~~~~~~~~~~~~d~~a~~Fl~el~~~Vr~~~PdvilIAE~~s~~ 1187 (1276)
++++|++ .||||||+|++..+... . |.. . -..++.+.||+++++.++.. +..+|+|.++..
T Consensus 178 il~fwl~-~GVDgfRLDAv~~l~K~-~--gt~-------c---~~~pe~~~~l~~lr~~~~~~--~~~ll~Ei~~y~ 238 (495)
T PRK13840 178 ILDRFAA-SHVTLIRLDAAGYAIKK-A--GTS-------C---FMIPETFEFIDRLAKEARAR--GMEVLVEIHSYY 238 (495)
T ss_pred HHHHHHH-CCCCEEEEechhhhhcC-C--CCC-------c---CCChHHHHHHHHHHHHhhhc--CCEEEEeCcccc
Confidence 9999998 59999999999877422 1 110 0 01256789999999998765 567899976543
|
|
| >PRK05402 glycogen branching enzyme; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.5e-21 Score=243.82 Aligned_cols=148 Identities=27% Similarity=0.441 Sum_probs=123.6
Q ss_pred cccccCCCCCcc-HHHHHHHHHHHHHHHHHHhhccCchHHhhHHHhhccceEec-C--CcEEEEEEccCCceEEEEeecc
Q psy9003 19 KLLERDPYLNPY-QYEMKRRYGLMVNFLEQFEKHEGGIEKFTTSYNKYGIHVQA-D--NSVRCFEWAPSAQQLYLTGNVS 94 (1276)
Q Consensus 19 ~l~~~dp~L~~~-~~~~~~Ry~~~~~~~~~i~~~~ggl~~Fs~~y~~fGah~~~-~--gg~~f~~wAP~A~~v~l~gdfn 94 (1276)
.++|.|||-.+. -.+. -+..+- +| +..++|+.||||+.. + +||+||+|||+|++|+|+||||
T Consensus 87 ~~~k~DPyaf~~~~~~~---------~~~~~~--~g---~~~~~~~~LGah~~~~~~~~gv~FrvwAP~A~~V~l~gdfn 152 (726)
T PRK05402 87 EQLIDDPYRFGPLLGEL---------DLYLFG--EG---THLRLYETLGAHPVTVDGVSGVRFAVWAPNARRVSVVGDFN 152 (726)
T ss_pred eeEeccccccCCCCCHH---------HHHHHh--CC---ccchhhhccccEEeccCCCCcEEEEEECCCCCEEEEEEEcC
Confidence 378999998754 1111 112221 22 567899999999876 3 5899999999999999999994
Q ss_pred -CCCcc--e-------EEEEEccCccccceEEEEEecCCC---------------CCCccccccc---------------
Q psy9003 95 -LTPWS--I-------MEEASLSSIKLIQSIQYILTGVFG---------------TPEQLKYLVD--------------- 134 (1276)
Q Consensus 95 -~~~w~--m-------~~~~~~~~~~~g~~yky~i~~~~g---------------rp~~as~~~d--------------- 134 (1276)
|..-. | +|+++||+++.|+.|||+|.+.+| +|+++|+|+|
T Consensus 153 ~w~~~~~~m~~~~~~Gvw~~~i~~~~~g~~Y~y~v~~~~g~~~~~~DPYa~~~~~~~~~~s~v~d~~~~~w~~~~~~~~~ 232 (726)
T PRK05402 153 GWDGRRHPMRLRGESGVWELFIPGLGEGELYKFEILTADGELLLKADPYAFAAEVRPATASIVADLSQYQWNDAAWMEKR 232 (726)
T ss_pred CCCCccccceEcCCCCEEEEEeCCCCCCCEEEEEEeCCCCcEeecCCCceEEEecCCCCcEEEeCCccCCCCCcchhhcc
Confidence 43222 5 999999999999999999998776 8999999988
Q ss_pred -------------ccccccC---------CChHHHHHHHHHHHHhcCc------------------------------CC
Q psy9003 135 -------------ECHKAGL---------FGTPEQLKYLVDECHKAGL------------------------------FG 162 (1276)
Q Consensus 135 -------------e~h~gs~---------~~y~e~a~~li~y~~~~~y------------------------------yg 162 (1276)
|+|+||| .+|++|+++||||+|++|+ ||
T Consensus 233 ~~~~~~~~~~~iYe~hv~~f~~~~~~~~~g~~~~i~~~l~~ylk~LGv~~i~L~Pi~e~~~~~~~GY~~~~y~ai~~~~G 312 (726)
T PRK05402 233 AKRNPLDAPISIYEVHLGSWRRHEDGGRFLSYRELADQLIPYVKEMGFTHVELLPIAEHPFDGSWGYQPTGYYAPTSRFG 312 (726)
T ss_pred cccCcccCCcEEEEEehhhhccCCCCCcccCHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcCcccC
Confidence 9999995 5899999999999999999 99
Q ss_pred CHHHHHHHHHHHHHcCCC
Q psy9003 163 TPEQLKYLVDECHKAGLF 180 (1276)
Q Consensus 163 tp~~l~~~vd~~h~~~i~ 180 (1276)
||+||++|||+||++||+
T Consensus 313 t~~dfk~lV~~~H~~Gi~ 330 (726)
T PRK05402 313 TPDDFRYFVDACHQAGIG 330 (726)
T ss_pred CHHHHHHHHHHHHHCCCE
Confidence 999999999999999998
|
|
| >PRK12313 glycogen branching enzyme; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.1e-21 Score=237.89 Aligned_cols=119 Identities=27% Similarity=0.448 Sum_probs=109.1
Q ss_pred HHHhhccceEecCC---cEEEEEEccCCceEEEEeeccCCCcc-----e------EEEEEccCccccceEEEEEecCCC-
Q psy9003 60 TSYNKYGIHVQADN---SVRCFEWAPSAQQLYLTGNVSLTPWS-----I------MEEASLSSIKLIQSIQYILTGVFG- 124 (1276)
Q Consensus 60 ~~y~~fGah~~~~g---g~~f~~wAP~A~~v~l~gdfn~~~w~-----m------~~~~~~~~~~~g~~yky~i~~~~g- 124 (1276)
+.|+.||||+..++ ||+||+|||+|++|+|+||| |+|+ | +|++++|++++|+.|||+|.+.+|
T Consensus 22 ~~~~~lGah~~~~~~~~gv~Frv~AP~A~~V~v~gdf--n~w~~~~~~m~~~~~Gvw~~~i~~~~~g~~Y~y~v~~~~g~ 99 (633)
T PRK12313 22 RLYEYLGAHLEEVDGEKGTYFRVWAPNAQAVSVVGDF--NDWRGNAHPLVRRESGVWEGFIPGAKEGQLYKYHISRQDGY 99 (633)
T ss_pred cchhcCCcEEeccCCcccEEEEEECCCCCEEEEEEec--CCCCcccccccccCCCEEEEEeCCCCCCCEEEEEEECCCCe
Confidence 57999999988853 89999999999999999999 5554 5 999999999999999999987666
Q ss_pred --------------CCCccccccc----------------------------ccccccC--------CChHHHHHHHHHH
Q psy9003 125 --------------TPEQLKYLVD----------------------------ECHKAGL--------FGTPEQLKYLVDE 154 (1276)
Q Consensus 125 --------------rp~~as~~~d----------------------------e~h~gs~--------~~y~e~a~~li~y 154 (1276)
+|.++|+|+| |+|+||| .+|++|+++|+||
T Consensus 100 ~~~~~DPya~~~~~~~~~~s~v~d~~~~~w~~~~~~~~~~~~~~~~~~~~iYe~hv~~f~~~~~~~~g~~~~~~~~ll~y 179 (633)
T PRK12313 100 QVEKIDPFAFYFEARPGTASIVWDLPEYKWKDGLWLARRKRWNALDRPISIYEVHLGSWKRNEDGRPLSYRELADELIPY 179 (633)
T ss_pred EEecCCCceEEEecCCCCceEECCCcccCCCChhhhhccccCCCCCCCceEEEEehhccccCCCCCccCHHHHHHHHHHH
Confidence 7899999987 9999984 5899999999999
Q ss_pred HHhcCc------------------------------CCCHHHHHHHHHHHHHcCCC
Q psy9003 155 CHKAGL------------------------------FGTPEQLKYLVDECHKAGLF 180 (1276)
Q Consensus 155 ~~~~~y------------------------------ygtp~~l~~~vd~~h~~~i~ 180 (1276)
+|++|+ ||||+||++|||+||++||+
T Consensus 180 l~~LGv~~i~L~Pi~~~~~~~~~GY~~~~y~~i~~~~Gt~~d~k~lv~~~H~~Gi~ 235 (633)
T PRK12313 180 VKEMGYTHVEFMPLMEHPLDGSWGYQLTGYFAPTSRYGTPEDFMYLVDALHQNGIG 235 (633)
T ss_pred HHHcCCCEEEeCchhcCCCCCCCCCCCcCcCcCCCCCCCHHHHHHHHHHHHHCCCE
Confidence 999999 99999999999999999999
|
|
| >TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase | Back alignment and domain information |
|---|
Probab=99.84 E-value=8.6e-21 Score=233.09 Aligned_cols=122 Identities=27% Similarity=0.470 Sum_probs=109.7
Q ss_pred hHHHhhccceEec-C--CcEEEEEEccCCceEEEEeecc-CCCcc--e-------EEEEEccCccccceEEEEEecCCC-
Q psy9003 59 TTSYNKYGIHVQA-D--NSVRCFEWAPSAQQLYLTGNVS-LTPWS--I-------MEEASLSSIKLIQSIQYILTGVFG- 124 (1276)
Q Consensus 59 s~~y~~fGah~~~-~--gg~~f~~wAP~A~~v~l~gdfn-~~~w~--m-------~~~~~~~~~~~g~~yky~i~~~~g- 124 (1276)
.++|+.||||... + +|++||+|||+|++|.|+|||| |+... | +|+++||+++.|+.|+|+|.+.+|
T Consensus 11 ~~~~~~LGah~~~~~~~~g~~FrvwAP~A~~V~L~~dfn~w~~~~~~m~~~~~~Gvw~~~i~~~~~g~~Y~y~v~~~~g~ 90 (613)
T TIGR01515 11 FRSYELLGSHYMELDGVSGTRFCVWAPNAREVRVAGDFNYWDGREHPMRRRNDNGIWELFIPGIGEGELYKYEIVTNNGE 90 (613)
T ss_pred CChHHhcCceEeccCCcCcEEEEEECCCCCEEEEEEecCCCCCceecceEecCCCEEEEEeCCCCCCCEEEEEEECCCCc
Confidence 4689999999876 3 3899999999999999999994 43322 5 999999999999999999998776
Q ss_pred --------------CCCccccccc----------------------------ccccccC---CChHHHHHHHHHHHHhcC
Q psy9003 125 --------------TPEQLKYLVD----------------------------ECHKAGL---FGTPEQLKYLVDECHKAG 159 (1276)
Q Consensus 125 --------------rp~~as~~~d----------------------------e~h~gs~---~~y~e~a~~li~y~~~~~ 159 (1276)
+|+++|+|+| |+|+||| .+|++|+++||||+|++|
T Consensus 91 ~~~~~DPYA~~~~~~~~~~s~v~d~~~~~w~~~~w~~~~~~~~~~~~~~~iYe~hv~~~~~~g~~~~i~~~l~dyl~~LG 170 (613)
T TIGR01515 91 IRLKADPYAFYAEVRPNTASLVYDLEGYSWQDQKWQEKRKAKTPYEKPVSIYELHLGSWRHGLSYRELADQLIPYVKELG 170 (613)
T ss_pred EEEeCCCCEeeeccCCCCcEEEECCccCccCchhhhhcccccCcccCCceEEEEehhhccCCCCHHHHHHHHHHHHHHcC
Confidence 7889999986 9999996 469999999999999999
Q ss_pred c------------------------------CCCHHHHHHHHHHHHHcCCC
Q psy9003 160 L------------------------------FGTPEQLKYLVDECHKAGLF 180 (1276)
Q Consensus 160 y------------------------------ygtp~~l~~~vd~~h~~~i~ 180 (1276)
+ ||||+||++|||+||++||+
T Consensus 171 vt~i~L~Pi~e~~~~~~wGY~~~~y~~~~~~~Gt~~dlk~lV~~~H~~Gi~ 221 (613)
T TIGR01515 171 FTHIELLPVAEHPFDGSWGYQVTGYYAPTSRFGTPDDFMYFVDACHQAGIG 221 (613)
T ss_pred CCEEEECCcccCCCCCCCCCCcccCcccccccCCHHHHHHHHHHHHHCCCE
Confidence 9 99999999999999999999
|
A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here. |
| >TIGR02455 TreS_stutzeri trehalose synthase, Pseudomonas stutzeri type | Back alignment and domain information |
|---|
Probab=99.83 E-value=5.9e-20 Score=220.27 Aligned_cols=267 Identities=13% Similarity=0.133 Sum_probs=171.5
Q ss_pred CceEEEEecCCccccCccCcHHHHHH-hhhhHHHHcCCCCCccceeecccccccccccccceeeccCccccccccccccC
Q psy9003 895 NLKIYESHVGICTQEQKCASYEDFVR-VVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAES 973 (1276)
Q Consensus 895 d~vIYElHVr~ft~~~~~Gtf~gl~e-k~LdyLK~LGVna~d~wV~LmP~f~~eew~~~~pi~~l~~~Pi~E~~i~~~~S 973 (1276)
..+=+.+++.++...++..-+..+.+ ...+||++|||++ |||+|+|+ .
T Consensus 51 a~~W~~~~P~s~i~~~~~s~~~~L~~~~~wdyL~~LGV~~----iwl~P~~~--------------------S------- 99 (688)
T TIGR02455 51 ASVWFTAYPAAIIAPEGCSVLEALADDALWKALSEIGVQG----IHNGPIKL--------------------S------- 99 (688)
T ss_pred cCeeEEecchhhcCCCCCcHHHHhcChHHHHHHHHhCCCE----EEeCccee--------------------c-------
Confidence 45566777887754444444444443 5699999999999 99995553 1
Q ss_pred CCcccCCCccccccccccccccccCCCCCCcccccccccccCCCCCccc-cccccccCCCCCCHHHHHHHHHHHHHcCCE
Q psy9003 974 HDQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKY-LVDECHKAGLFGTPEQLKYLVDECHKAGLY 1052 (1276)
Q Consensus 974 ~~~~~WGYdp~nyf~~d~~~y~~~S~~~Dp~~~~dap~~~yas~s~hkY-t~D~~~ID~~~Gt~eEfK~LV~alHk~GI~ 1052 (1276)
..-|||+-+-.. ...| ..| +.|||.|||.+||++|++++|++||+
T Consensus 100 --Ggi~g~~~tP~~-------------------------------D~gyDi~d-~~Idp~~GT~eDf~~L~~~Ah~~G~~ 145 (688)
T TIGR02455 100 --GGIRGREFTPSI-------------------------------DGNFDRIS-FDIDPLLGSEEELIQLSRMAAAHNAI 145 (688)
T ss_pred --ccccccCCCCCC-------------------------------CCCCCccc-CccCcccCCHHHHHHHHHHHHHCCCE
Confidence 012444321110 0123 334 36789999999999999999999999
Q ss_pred EEEEEeccccCCcccCCCcCC--CCCCCcccc-------------cCCCC------------------------------
Q psy9003 1053 VLLDVVHSHASKNVLDGLNEF--DGTQACFFH-------------DGPRG------------------------------ 1087 (1276)
Q Consensus 1053 VILDvV~NHt~~~~~~~~~~f--~g~~~~Yy~-------------~~~~g------------------------------ 1087 (1276)
||+|+|+|||+..++ +..+- .+.-+.||+ ..+.+
T Consensus 146 vi~DlVpnHTs~ghd-F~lAr~~~~~Y~g~Y~mvei~~~~W~vwpd~~~~~~~~~l~~~~~~~L~~~g~i~~~l~rviF~ 224 (688)
T TIGR02455 146 TIDDIIPAHTGKGAD-FRLAELAHGDYPGLYHMVEIREEDWALLPEVPAGRDAVNLLPAQCDELKAKHYIVGQLQRVIFF 224 (688)
T ss_pred EEEEeCCCCCCCCcc-hHHHhhcCCCCCCceeeccccccccccCCCCCcccccccccHHHHHHHhhccCcccccccceec
Confidence 999999999999986 43211 222345551 01111
Q ss_pred ----CCCCCC------------------------CcCCCCCcHH--HHHHHH-HHHHHHHHhCCCcEEccCCcccccccc
Q psy9003 1088 ----THPLWD------------------------SRLFNYSEIE--VLRFLL-SNLRWYLDEYQFDGFRFDGVTSMLYHN 1136 (1276)
Q Consensus 1088 ----~~~~W~------------------------g~~LN~~np~--Vr~~Ii-dsl~~Wv~eygVDGFRfD~a~~L~~~d 1136 (1276)
+-++|+ -|+|||.||. ||+.|+ +++++|++ .|+||||+|+++.|.-..
T Consensus 225 ~pg~e~s~Wt~d~~v~g~dG~~Rrw~Y~H~F~~~QPdLNw~dPs~av~~~~~gdal~~w~~-lG~~GfRLDAvpfLg~e~ 303 (688)
T TIGR02455 225 EPGIKDTDWSATGEITGVDGKTRRWVYLHYFKEGQPSLNWLDPTFAAQQLIIGDALHAIDC-LGARGLRLDANGFLGVER 303 (688)
T ss_pred CCCcccCCceecccccCCCccchhhhhhhhccCCCCccCccCccHHHHHHHHHHHHHHHHH-hccccceeccccceeeec
Confidence 123553 1789999999 999999 99999999 699999999999885332
Q ss_pred CCCCCCCCCCCccccCCCCCchHHHHHHHHHHHHH--hhCCCeEEEEEccCCCCCCccccccCCcccCcccCCCccc---
Q psy9003 1137 HGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLH--DKYPEIITIAEDVSGMPASCRPVTEGGTGFDYRLVSLEGS--- 1211 (1276)
Q Consensus 1137 ~g~g~~~~~~~~~~~~~~~d~~a~~Fl~el~~~Vr--~~~PdvilIAE~~s~~p~~~~p~~~gglGFD~~~n~lEes--- 1211 (1276)
...++.| .+.+.|++.+++.|. ..+|+.++++|.-- +|...+.+.. + |.|+.++++-..
T Consensus 304 ~~~~~~~-------------~e~h~ll~~~r~~l~~~~r~~Gg~ll~E~nl-~~~d~~~~~g-~-~~dl~~dF~t~p~~~ 367 (688)
T TIGR02455 304 RAEGTAW-------------SEGHPLSLTGNQLIAGAIRKAGGFSFQELNL-TIDDIAAMSH-G-GADLSYDFITRPAYH 367 (688)
T ss_pred CCCCCCC-------------CccCHHHHHHHHHHHHhhhcCCeeEeeeccC-CHHHHHHHhC-C-CcceeecccccHHHH
Confidence 2222222 235678999999988 78999999999533 3333334433 3 777777644211
Q ss_pred -hh---hHHHHHHHHHHHHHhcccCCCCCeeEeecCC
Q psy9003 1212 -AL---SALFDAAMNTTEERFKWLSADPGYVSTKHEG 1244 (1276)
Q Consensus 1212 -aL---S~~F~~~Ln~l~~~~p~L~~~~~~~l~nHD~ 1244 (1276)
|| ..++.+.+.+.....|.-.+.-...+-|||+
T Consensus 368 ~AL~tgda~pLr~~L~~~~~~gid~~~~~~~LrNHDE 404 (688)
T TIGR02455 368 HALLTGDTEFLRLMLKEMHAFGIDPASLIHALQNHDE 404 (688)
T ss_pred HHHHcCCHHHHHHHHHhhhcCCCCchhhhhhccCccc
Confidence 22 2555555555444444211111244668887
|
Trehalose synthase catalyzes a one-step conversion of maltose to trehalose. This is an alternative to the OtsAB and TreYZ pathways. This family includes a characterized example from Pseudomonas stutzeri plus very closely related sequences from other Pseudomonads. Cutoff scores are set to find a more distantly related sequence from Desulfovibrio vulgaris, likely to be functionally equivalent, between trusted and noise limits. |
| >TIGR03852 sucrose_gtfA sucrose phosphorylase | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.8e-20 Score=222.01 Aligned_cols=239 Identities=14% Similarity=0.123 Sum_probs=154.5
Q ss_pred cCccCcHHHHHHhhhhHHHHcCCCCCccceeecccccccccccccceeeccCccccccccccccCCCcccCCCccccccc
Q psy9003 909 EQKCASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAESHDQALVGDKTIAFWL 988 (1276)
Q Consensus 909 ~~~~Gtf~gl~ek~LdyLK~LGVna~d~wV~LmP~f~~eew~~~~pi~~l~~~Pi~E~~i~~~~S~~~~~WGYdp~nyf~ 988 (1276)
.+..|++.+++++ ||++ ||++ |||+|.|+ . + .+.||++.||+
T Consensus 13 g~glgdl~g~l~~---yL~~-~v~~----i~LlPffp--------------------s--------~-sD~GYdv~DY~- 54 (470)
T TIGR03852 13 GKNLKELNKVLEN---YFKD-AVGG----VHLLPFFP--------------------S--------T-GDRGFAPMDYT- 54 (470)
T ss_pred CCChhhHHHHHHH---HHHH-hCCE----EEECCCCc--------------------C--------C-CCCCcCchhhc-
Confidence 3567888888875 9999 8999 99995542 1 1 24688887777
Q ss_pred cccccccccCCCCCCcccccccccccCCCCCccccccccccCCCCCCHHHHHHHHHHHHHcCCEEEEEEeccccCCcccC
Q psy9003 989 MDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLD 1068 (1276)
Q Consensus 989 ~d~~~y~~~S~~~Dp~~~~dap~~~yas~s~hkYt~D~~~ID~~~Gt~eEfK~LV~alHk~GI~VILDvV~NHt~~~~~~ 1068 (1276)
+|||+||+.++|++|+++ |+||+|+|+|||+..|+|
T Consensus 55 ---------------------------------------~VDP~~Gt~~Df~~L~~~-----~kvmlDlV~NHtS~~h~W 90 (470)
T TIGR03852 55 ---------------------------------------EVDPAFGDWSDVEALSEK-----YYLMFDFMINHISRQSEY 90 (470)
T ss_pred ---------------------------------------eeCcccCCHHHHHHHHHh-----hhHHhhhcccccccchHH
Confidence 455999999999999997 899999999999999988
Q ss_pred CCcCCCC-CC---Ccccc-c----C---CC-C------------CCCC-----------CC-----CcCCCCCcHHHHHH
Q psy9003 1069 GLNEFDG-TQ---ACFFH-D----G---PR-G------------THPL-----------WD-----SRLFNYSEIEVLRF 1107 (1276)
Q Consensus 1069 ~~~~f~g-~~---~~Yy~-~----~---~~-g------------~~~~-----------W~-----g~~LN~~np~Vr~~ 1107 (1276)
+.....+ .. ..||. . . +. . .+.. |+ .++||+.||.|+++
T Consensus 91 Fq~~~~~~~~s~y~d~fi~~~~~w~~~~~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~w~tF~~~QpDLN~~np~v~e~ 170 (470)
T TIGR03852 91 YQDFLEKKDNSKYKDLFIRYKDFWPNGRPTQEDVDLIYKRKDRAPYQEVTFADGSTEKVWNTFGEEQIDLDVTSETTKRF 170 (470)
T ss_pred HHHHHhcCCCCCccceEEecccccCCCCccccccccccCCCCCCCCCceEEcCCCCeEEEccCCccccccCCCCHHHHHH
Confidence 7543322 11 24444 1 0 10 0 0012 11 37899999999999
Q ss_pred HHHHHHHHHHhCCCcEEccCCccccccccCCCCCCCCCCCccccCCCCCchHHHHHHHHHHHHHhhCCCeEEEEEccCCC
Q psy9003 1108 LLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGM 1187 (1276)
Q Consensus 1108 Iidsl~~Wv~eygVDGFRfD~a~~L~~~d~g~g~~~~~~~~~~~~~~~d~~a~~Fl~el~~~Vr~~~PdvilIAE~~s~~ 1187 (1276)
|.+++++|++ .||||||+|+++.+... .| .+ . ....++.+++|+++++.+ ..|++++|+|.+..+
T Consensus 171 i~~il~fwl~-~GvdgfRLDAv~~l~K~-~G--t~-----c----~~l~pet~~~l~~~r~~~--~~~~~~ll~E~~~~~ 235 (470)
T TIGR03852 171 IRDNLENLAE-HGASIIRLDAFAYAVKK-LG--TN-----D----FFVEPEIWELLDEVRDIL--APTGAEILPEIHEHY 235 (470)
T ss_pred HHHHHHHHHH-cCCCEEEEecchhhccc-CC--CC-----c----ccCChhHHHHHHHHHHHh--ccCCCEEEeHhhhhc
Confidence 9999999997 69999999999988422 11 10 0 012257889999999877 557999999986543
Q ss_pred CCCccccccCCcccCcccCCCccchhhHHHHHHHHHHHHHhcccCCCCCeeEeecCCCeE
Q psy9003 1188 PASCRPVTEGGTGFDYRLVSLEGSALSALFDAAMNTTEERFKWLSADPGYVSTKHEGDKV 1247 (1276)
Q Consensus 1188 p~~~~p~~~gglGFD~~~n~lEesaLS~~F~~~Ln~l~~~~p~L~~~~~~~l~nHD~~RV 1247 (1276)
.....--..+.+=|+|....+-=.++...-.+.+.++.+..|.. +-+++.|||.=-+
T Consensus 236 ~~~~~~gde~~mvY~F~lppl~l~al~~~~~~~l~~wl~~~p~~---~~nfL~sHDgigl 292 (470)
T TIGR03852 236 TIQFKIAEHGYYVYDFALPMLVLYSLYSGKTNRLADWLRKSPMK---QFTTLDTHDGIGV 292 (470)
T ss_pred ccccccccceeEEccCccchhhHHHhhccCHHHHHHHHHhCccc---ceEEeecCCCCCC
Confidence 32110001222334444332200011011123444444556641 1256789997655
|
In the forward direction, this enzyme uses phosphate to cleave sucrose into D-fructose + alpha-D-glucose 1-phosphate. Characterized representatives from Streptococcus mutans and Bifidobacterium adolescentis represent well-separated branches of a molecular phylogenetic tree. In S. mutans, the region including this gene has been associated with neighboring transporter genes and multiple sugar metabolism. |
| >KOG0471|consensus | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.5e-20 Score=225.93 Aligned_cols=169 Identities=21% Similarity=0.226 Sum_probs=130.0
Q ss_pred CCCCCceEEEEecCCccc--cCccCcHHHHHHhhhhHHHHcCCCCCccceeecccccccccccccceeeccCcccccccc
Q psy9003 891 KKPDNLKIYESHVGICTQ--EQKCASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTV 968 (1276)
Q Consensus 891 ~~~~d~vIYElHVr~ft~--~~~~Gtf~gl~ek~LdyLK~LGVna~d~wV~LmP~f~~eew~~~~pi~~l~~~Pi~E~~i 968 (1276)
.+|+..+|||+.+++|.. ....|+++|+.++ |+||+++|+|+ ||+.|+++ .
T Consensus 13 ~~W~~~~~YQI~~~sF~~s~~d~~G~~~GI~~k-ldyi~~lG~ta----iWisP~~~--------------------s-- 65 (545)
T KOG0471|consen 13 DWWKTESIYQIYPDSFADSDGDGVGDLKGITSK-LDYIKELGFTA----IWLSPFTK--------------------S-- 65 (545)
T ss_pred hhhhcCceeEEeccccccccCCCccccccchhh-hhHHHhcCCce----EEeCCCcC--------------------C--
Confidence 356789999999999975 4566999999996 99999999999 99995442 1
Q ss_pred ccccCCCcccCCCccccccccccccccccCCCCCCcccccccccccCCCCCccccccccccCCCCCCHHHHHHHHHHHHH
Q psy9003 969 AYAESHDQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHK 1048 (1276)
Q Consensus 969 ~~~~S~~~~~WGYdp~nyf~~d~~~y~~~S~~~Dp~~~~dap~~~yas~s~hkYt~D~~~ID~~~Gt~eEfK~LV~alHk 1048 (1276)
..-+.||++.||+ +++|+||+.++|++||+++|+
T Consensus 66 ------~~~~~GY~~~d~~----------------------------------------~l~p~fGt~edf~~Li~~~h~ 99 (545)
T KOG0471|consen 66 ------SKPDFGYDASDLE----------------------------------------QLRPRFGTEEDFKELILAMHK 99 (545)
T ss_pred ------CHHHhccCccchh----------------------------------------hhcccccHHHHHHHHHHHHhh
Confidence 1125788887777 355999999999999999999
Q ss_pred cCCEEEEEEeccccCCcccCCCcCCCCCCC--cccccCCCCC--------CCCC---------C----------------
Q psy9003 1049 AGLYVLLDVVHSHASKNVLDGLNEFDGTQA--CFFHDGPRGT--------HPLW---------D---------------- 1093 (1276)
Q Consensus 1049 ~GI~VILDvV~NHt~~~~~~~~~~f~g~~~--~Yy~~~~~g~--------~~~W---------~---------------- 1093 (1276)
+||++|+|+|+||++..++|+......... .||...+.+. +.+| .
T Consensus 100 ~gi~ii~D~viNh~~~~~~wf~~~~~~~~~y~d~~~~~~~~~~~~g~~~~p~nw~~~~~~s~~~~~e~~~~~~l~~~~~~ 179 (545)
T KOG0471|consen 100 LGIKIIADLVINHRSDEVEWFKASPTSKTGYEDWYPWHDGSSLDVGKRIPPLNWLSVFGGSAWPFDEGRQKYYLGQFAVL 179 (545)
T ss_pred cceEEEEeeccccCCccccccccCccccccceeeeeccCcccccccCCCCccchHhhhccccCcccccccceeccchhhc
Confidence 999999999999999888776533222111 1221111100 1111 0
Q ss_pred CcCCCCCcHHHHHHHHHHHH-HHHHhCCCcEEccCCccccc
Q psy9003 1094 SRLFNYSEIEVLRFLLSNLR-WYLDEYQFDGFRFDGVTSML 1133 (1276)
Q Consensus 1094 g~~LN~~np~Vr~~Iidsl~-~Wv~eygVDGFRfD~a~~L~ 1133 (1276)
.+++|+++|.|++.|.++++ +|.+ +||||||+|++..+.
T Consensus 180 ~pDln~~n~~V~~~~~~~l~~~~~~-~gvdGfRiD~v~~~~ 219 (545)
T KOG0471|consen 180 QPDLNYENPDVRKAIKEWLRDFWLE-KGVDGFRIDAVKGYA 219 (545)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHhh-cCCCeEEEEcccccc
Confidence 27899999999999999999 7777 799999999999885
|
|
| >PF14872 GHL5: Hypothetical glycoside hydrolase 5 | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.7e-18 Score=201.42 Aligned_cols=397 Identities=20% Similarity=0.219 Sum_probs=243.6
Q ss_pred ccCCCCCcccCeeecCceEEEEEccCCc-------EEEEE-------ccCCC------CccccccceecCCCeEEEEcCC
Q psy9003 765 KAGLFGTPEQLKYLVDECHKAGLLCFMH-------VVCAA-------GDFNN------WNREEFAYKKLDFGKWELVLPP 824 (1276)
Q Consensus 765 ~~G~~Gtp~G~~y~~D~a~FalwAP~A~-------~VsLv-------GDFN~------wd~~~~pM~r~~~GVWsl~Ip~ 824 (1276)
.+|++-.++|+ +.|-.|.|... .|+|. -|+.. |....+|+.+.+.-.|.+ +.|
T Consensus 27 rLGAh~~~dGl------teiGFWtPel~~~~i~~~~i~LEVftP~~~ID~~~~~q~v~f~R~~~~L~~qgey~WgV-v~G 99 (811)
T PF14872_consen 27 RLGAHYRPDGL------TEIGFWTPELAGDVIQPRDIYLEVFTPLEPIDPRAPEQTVRFRRDRLPLERQGEYHWGV-VAG 99 (811)
T ss_pred HhcCccCCCCc------eEEeeccchhhhhhccccceEEEEecCCCCCCCcCCCceeEEEEEEEeeccccceeeeh-hhc
Confidence 35555555554 57889999876 66653 22221 112345666677778877 778
Q ss_pred CCCCCcccCcccEEEEEEEEeCCeeeeecCCcceEeecCCCCCc--cccceeeCCCCC-CCC-CcC-----CCC-CCCCC
Q psy9003 825 NPDGSCKLTHLSQVKLVVRNQHGHLLDRLSPWATYVTEPPVVGH--AYEQRIWNPKPQ-DKH-KWT-----SSK-PKKPD 894 (1276)
Q Consensus 825 ~~~G~~~i~hGs~YkYrV~~~dG~~~~~~DPYAkav~~~~~~s~--v~~~~~~~p~~~-~~y-~W~-----~~r-p~~~~ 894 (1276)
...|. ....|+.|..+....+|.+..+.||.|+++.. +.++. +|+......... .+| .-. .+. +..+.
T Consensus 100 lraGt-r~q~GsfYwLry~d~~~~~~~I~DpLaySlPy-GvfaPAElYDl~~lq~~RaD~~Yf~~~~a~~~~~~~~rv~~ 177 (811)
T PF14872_consen 100 LRAGT-RDQAGSFYWLRYRDQDGEVQIIRDPLAYSLPY-GVFAPAELYDLERLQRRRADLDYFEATGAADPSDGIPRVPA 177 (811)
T ss_pred cCCCC-cccccceEEEEEccCCCCeEEecccccccCcc-cccChHHhhchHhHhhhhhhHHHHHhhccccCCCCCcccCC
Confidence 88886 77899999999988889988999999987643 22221 233211111110 011 100 011 22446
Q ss_pred CceEEEEecCCccccCccCcHHHHHHhhhhHHH---------------HcCCCCCccceeecccccc-----------cc
Q psy9003 895 NLKIYESHVGICTQEQKCASYEDFVRVVIPRIV---------------KQGMAIPDKWIELLKKFKD-----------ED 948 (1276)
Q Consensus 895 d~vIYElHVr~ft~~~~~Gtf~gl~ek~LdyLK---------------~LGVna~d~wV~LmP~f~~-----------ee 948 (1276)
+..|-++||++.|++ ||+.|+++ +...|. -.|+++ |||||+-+- +.
T Consensus 178 P~nILQiHv~TAsp~---GtlaGLT~-iyqria~K~~~g~pLtp~E~ny~GYDA----vQLLPiEPtieyr~e~~~~h~F 249 (811)
T PF14872_consen 178 PRNILQIHVGTASPE---GTLAGLTR-IYQRIADKLAAGEPLTPAEENYVGYDA----VQLLPIEPTIEYRAENEPGHEF 249 (811)
T ss_pred CceeEEEecCCCCCC---cchHHHHH-HHHHHHHHHhcCCCCChhHHhcccccc----eeeeccCCcceeccccCCCCce
Confidence 789999999999876 78888876 233332 389999 999986553 22
Q ss_pred ccccccee-ecc--Ccccccc---ccccccCCCcccCCCccccccccccccccccCCCCCCcccccccccccCCCCCccc
Q psy9003 949 WNMGNIVH-TLT--NRRYMEK---TVAYAESHDQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKY 1022 (1276)
Q Consensus 949 w~~~~pi~-~l~--~~Pi~E~---~i~~~~S~~~~~WGYdp~nyf~~d~~~y~~~S~~~Dp~~~~dap~~~yas~s~hkY 1022 (1276)
|+...+-. .++ ..++.+. .+. -...+..|||||+.-+- |.+++|. +-
T Consensus 250 f~~~~~d~~~~~~~~~~~~~~~~v~v~-L~kPdtqNWGYDv~I~G----------saAtNPa-----lL----------- 302 (811)
T PF14872_consen 250 FSIRPEDEDELDPETEGVHEDGDVTVT-LRKPDTQNWGYDVVILG----------SAATNPA-----LL----------- 302 (811)
T ss_pred eeecccccccccccccccccCceEEEE-ecCCCccccCcceeeec----------cCCCCHH-----HH-----------
Confidence 33222100 000 0011000 000 01135689999987555 6677774 22
Q ss_pred cccccccCCCCCCHHHHHHHHHHHHH---cCCEEEEEEeccccCCcccCCCcCCCCCCCcccccCCCCCCCCCCCcCCCC
Q psy9003 1023 LVDECHKAGLFGTPEQLKYLVDECHK---AGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRLFNY 1099 (1276)
Q Consensus 1023 t~D~~~ID~~~Gt~eEfK~LV~alHk---~GI~VILDvV~NHt~~~~~~~~~~f~g~~~~Yy~~~~~g~~~~W~g~~LN~ 1099 (1276)
.-++++|+-.||.+||. ..|.||+|+||.|....... -.++.|+.. ++..|.++|+
T Consensus 303 ---------~TlRPDElVdfiatLHnFp~gPIqvIyDlVyGHADNQ~~~------LLn~~flkG------PnMYGQdlnh 361 (811)
T PF14872_consen 303 ---------ETLRPDELVDFIATLHNFPTGPIQVIYDLVYGHADNQALD------LLNRRFLKG------PNMYGQDLNH 361 (811)
T ss_pred ---------hcCCcHHHHHHHHHHhcCCCCCeEEEEeeecccccchhhH------hhhhhhccC------Cccccccccc
Confidence 12689999999999996 66999999999998876432 222344432 3566789999
Q ss_pred CcHHHHHHHHHHHHHHHHhCCCcEEccCCccccccccCCCCCCCCCCCccccCCCCCchHHHHHHHHHHHHHhhCCC---
Q psy9003 1100 SEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPE--- 1176 (1276)
Q Consensus 1100 ~np~Vr~~Iidsl~~Wv~eygVDGFRfD~a~~L~~~d~g~g~~~~~~~~~~~~~~~d~~a~~Fl~el~~~Vr~~~Pd--- 1176 (1276)
.+|.||..+++.-|.-++ +|+||+|+|.+....+.+ ...+.+..+- .|+.+|.+.+.++.+.
T Consensus 362 q~P~VRAILLEmQRRK~n-~GaDGIRVDGgQDFk~fn-------------plt~~ve~DD-~YL~~M~dvvQ~I~~~~r~ 426 (811)
T PF14872_consen 362 QNPVVRAILLEMQRRKIN-TGADGIRVDGGQDFKFFN-------------PLTGRVEYDD-AYLLAMSDVVQEIGGARRL 426 (811)
T ss_pred cChHHHHHHHHHHHhhcc-cCCceeEecccccceeec-------------ccccccccch-HHHHHHHHHHhhcccccee
Confidence 999999999999999888 899999999987553221 1112222221 3899999999887654
Q ss_pred eEEEEEccCCCCCCccccccC--------CcccCcccCCC---ccc-hhhHHHHHHHHHHHHHhcccCCCCCeeEe--ec
Q psy9003 1177 IITIAEDVSGMPASCRPVTEG--------GTGFDYRLVSL---EGS-ALSALFDAAMNTTEERFKWLSADPGYVST--KH 1242 (1276)
Q Consensus 1177 vilIAE~~s~~p~~~~p~~~g--------glGFD~~~n~l---Ees-aLS~~F~~~Ln~l~~~~p~L~~~~~~~l~--nH 1242 (1276)
.++|-|+-..||.- .|..- -.-=.|+|.++ .+. +|-.=|.+...|+.+.+- .+..|+.+ ||
T Consensus 427 ~f~IfEDGRPWP~e--gWE~~StYr~lie~~P~sfQWGPLiFAHNTP~L~~FW~~KW~RVcEv~~---~G~~WITGcaNH 501 (811)
T PF14872_consen 427 PFTIFEDGRPWPQE--GWEEISTYRDLIELRPDSFQWGPLIFAHNTPALQGFWDRKWRRVCEVMF---QGENWITGCANH 501 (811)
T ss_pred EEEEecCCCcCCcc--chHHHHHHHHHHHhCCccccccceeeecCChHHHHHHHHHHHHHHHHHh---cccceeeccccc
Confidence 67899987777752 11100 00112455533 121 121334555555555433 34557765 99
Q ss_pred CCCe
Q psy9003 1243 EGDK 1246 (1276)
Q Consensus 1243 D~~R 1246 (1276)
|+-|
T Consensus 502 DTvR 505 (811)
T PF14872_consen 502 DTVR 505 (811)
T ss_pred cccc
Confidence 9876
|
|
| >KOG0470|consensus | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.2e-19 Score=217.99 Aligned_cols=166 Identities=29% Similarity=0.470 Sum_probs=141.1
Q ss_pred CCh--hcccccccCCCCCccHHHHHHHHHHHHHHHHHHhhccCchHHhhHHHhhccceEecCCcEEEEEEccCCceEEEE
Q psy9003 13 HIP--ELHKLLERDPYLNPYQYEMKRRYGLMVNFLEQFEKHEGGIEKFTTSYNKYGIHVQADNSVRCFEWAPSAQQLYLT 90 (1276)
Q Consensus 13 ~~p--~~~~l~~~dp~L~~~~~~~~~Ry~~~~~~~~~i~~~~ggl~~Fs~~y~~fGah~~~~gg~~f~~wAP~A~~v~l~ 90 (1276)
.+| .+.+++++||||.||...+++||+.+.+.++.|.+.+|||+.|+.+|+.||+|+..++.+.|++|||.|+.|+++
T Consensus 51 ~~p~~~ve~~~~~d~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~l~~~~~~y~~~g~h~~~d~~v~~~ewaP~a~~~s~~ 130 (757)
T KOG0470|consen 51 DLPADVVEKFYEIDPFLVPFALFLRERYKQLDDGLEFIGKSEGGLSAFSRGYEPLGTHRTPDGRVDFTEWAPLAEAVSLI 130 (757)
T ss_pred CCChHHhhcccccccccccccccchhhHHHHHHHhhhhhhccCChhhhhccccccceeccCCCceeeeeecccccccccc
Confidence 445 779999999999999999999999999999999999999999999999999999998889999999999999999
Q ss_pred eeccCCCcc---e---------EEEEEccCc-------cccceEEEEEecCCC-----CCCccc----------------
Q psy9003 91 GNVSLTPWS---I---------MEEASLSSI-------KLIQSIQYILTGVFG-----TPEQLK---------------- 130 (1276)
Q Consensus 91 gdfn~~~w~---m---------~~~~~~~~~-------~~g~~yky~i~~~~g-----rp~~as---------------- 130 (1276)
||| |+|+ | +|++++|.- .-|.-+|+.+.++.| +|..|.
T Consensus 131 gd~--n~W~~~~~~~~~k~~~g~w~i~l~~~~~~s~~v~H~s~~~~~~~~p~g~~~~~~~~~~~~~~~~~~~~q~~~~~~ 208 (757)
T KOG0470|consen 131 GDF--NNWNPSSNELKPKDDLGVWEIDLPPKVNGSGAVPHGSVSKIHLSTPYGETCKRIPAWATYVDQEGEGPQYYGIYW 208 (757)
T ss_pred ccc--CCCCCcccccCcccccceeEEecCcccCCCccccccceeEEEeecCCcceeeccChHhhcccCCCcccceeeccC
Confidence 999 6666 2 999999854 223445556777877 222222
Q ss_pred ---------------------cccccccc-cc------CCC---hHHHHHHHHHHHHhcCc-------------------
Q psy9003 131 ---------------------YLVDECHK-AG------LFG---TPEQLKYLVDECHKAGL------------------- 160 (1276)
Q Consensus 131 ---------------------~~~de~h~-gs------~~~---y~e~a~~li~y~~~~~y------------------- 160 (1276)
...=|+|. |= =-+ |.+.+++.+|.+|+.||
T Consensus 209 ~~~~e~~w~~~~~~p~~P~~sL~IYE~HVrgfS~~E~~v~~~~gY~~FteKvlphlK~LG~NaiqLmpi~Ef~~~~~s~G 288 (757)
T KOG0470|consen 209 DPSPEFDWGFKHSRPKIPESSLRIYELHVRGFSSHESKVNTRGGYLGFTEKVLPHLKKLGYNAIQLMPIFEFGHYYASWG 288 (757)
T ss_pred CCCCcccccccCCCCCCChhheEEEEEeeccccCCCCccccccchhhhhhhhhhHHHHhCccceEEeehhhhhhhhhccC
Confidence 22229999 42 345 99999999999999999
Q ss_pred ------------CCCHH------HHHHHHHHHHHcCCC
Q psy9003 161 ------------FGTPE------QLKYLVDECHKAGLF 180 (1276)
Q Consensus 161 ------------ygtp~------~l~~~vd~~h~~~i~ 180 (1276)
||||+ |||+|||++|..||.
T Consensus 289 Y~~~nFFapssrYgt~~s~~ri~efK~lVd~aHs~GI~ 326 (757)
T KOG0470|consen 289 YQVTNFFAPSSRYGTPESPCRINEFKELVDKAHSLGIE 326 (757)
T ss_pred cceeEeecccccccCCCcccchHHHHHHHHHHhhCCcE
Confidence 99999 999999999999998
|
|
| >TIGR02401 trehalose_TreY malto-oligosyltrehalose synthase | Back alignment and domain information |
|---|
Probab=99.76 E-value=4e-18 Score=211.63 Aligned_cols=193 Identities=17% Similarity=0.227 Sum_probs=137.0
Q ss_pred cCcHHHHHHhhhhHHHHcCCCCCccceeecccccccccccccceeeccCccccccccccccCCCcccCCCcccccccccc
Q psy9003 912 CASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAESHDQALVGDKTIAFWLMDK 991 (1276)
Q Consensus 912 ~Gtf~gl~ek~LdyLK~LGVna~d~wV~LmP~f~~eew~~~~pi~~l~~~Pi~E~~i~~~~S~~~~~WGYdp~nyf~~d~ 991 (1276)
.+||.+++++ ||||++||||+ |||+|+|+ . .+..+|||++.||+
T Consensus 12 ~~tf~~~~~~-L~YL~~LGv~~----V~lsPi~~--------------------a-------~~gs~hGYdv~D~~---- 55 (825)
T TIGR02401 12 GFTFDDAAAL-LPYLKSLGVSH----LYLSPILT--------------------A-------VPGSTHGYDVVDHS---- 55 (825)
T ss_pred CCCHHHHHHh-hHHHHHcCCCE----EEeCcCcc--------------------C-------CCCCCCCCCCCCCC----
Confidence 4799999985 99999999999 99995442 1 11235899998888
Q ss_pred ccccccCCCCCCcccccccccccCCCCCccccccccccCCCCCCHHHHHHHHHHHHHcCCEEEEEEeccccCCc---ccC
Q psy9003 992 EMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKN---VLD 1068 (1276)
Q Consensus 992 ~~y~~~S~~~Dp~~~~dap~~~yas~s~hkYt~D~~~ID~~~Gt~eEfK~LV~alHk~GI~VILDvV~NHt~~~---~~~ 1068 (1276)
. |||.+|+.++|++||++||++||+||||+|+||++.+ ++|
T Consensus 56 -----------------~-------------------idp~lGt~edf~~Lv~aah~~Gm~vIlDiVpNH~a~~~~~n~w 99 (825)
T TIGR02401 56 -----------------E-------------------INPELGGEEGLRRLSEAARARGLGLIVDIVPNHMAVHLEQNPW 99 (825)
T ss_pred -----------------C-------------------cCCCCCCHHHHHHHHHHHHHCCCEEEEEecccccccccccChH
Confidence 3 3489999999999999999999999999999999976 222
Q ss_pred CCcCC-CCCCC-------------------------------------------------ccccc----CCCC-------
Q psy9003 1069 GLNEF-DGTQA-------------------------------------------------CFFHD----GPRG------- 1087 (1276)
Q Consensus 1069 ~~~~f-~g~~~-------------------------------------------------~Yy~~----~~~g------- 1087 (1276)
+.... .|..+ .||.. .|..
T Consensus 100 f~dvl~~g~~S~y~~~Fdidw~~~~~~gkvllP~Lg~~y~~~l~~g~l~l~~d~~~~~~l~y~~~~~Pi~p~ty~~il~~ 179 (825)
T TIGR02401 100 WWDVLKNGPSSAYAEYFDIDWDPLGGDGKLLLPILGDQYGAVLDRGEIKLRFDGDGTLALRYYDHRLPLAPGTLPELEVL 179 (825)
T ss_pred HHHHHHhCCCCCccCceEEeCCCCCCCCceeecccCchhhhHHhcCceeeeecCCCceeEEecCccCCcCccchhhhhhh
Confidence 21000 00000 12221 1100
Q ss_pred -----C--------------CCCCC----------------CcCCCCCcHHHHHHHHHHHHHHHHhCCCcEEccCCcccc
Q psy9003 1088 -----T--------------HPLWD----------------SRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSM 1132 (1276)
Q Consensus 1088 -----~--------------~~~W~----------------g~~LN~~np~Vr~~Iidsl~~Wv~eygVDGFRfD~a~~L 1132 (1276)
. ...|- -+.++.++|+|.+.....+..|+++..|||+|+|.+..+
T Consensus 180 ~~~~~~~~~l~~ll~~Q~yRL~~Wr~a~~~inYRrFf~i~~L~~lr~E~~~Vf~~~h~~i~~lv~~g~vdGlRIDh~dGL 259 (825)
T TIGR02401 180 EDVPGDGDALKKLLERQHYRLTWWRVAAGEINYRRFFDINDLAGVRVEDPAVFDATHRLVLELVAEGLVDGLRIDHIDGL 259 (825)
T ss_pred ccccCChhhHHHHHHHHHHHhhhhhccccccCcccccCccccccccCCCHHHHHHHHHHHHHHHHcCCCceEEecccccc
Confidence 0 01232 145678899999999999999999977999999988877
Q ss_pred ccccCCCCCCCCCCCccccCCCCCchHHHHHHHHHHHHHhhCCCeEEEEE-ccCCCCCCccccc-cCCcccCc
Q psy9003 1133 LYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAE-DVSGMPASCRPVT-EGGTGFDY 1203 (1276)
Q Consensus 1133 ~~~d~g~g~~~~~~~~~~~~~~~d~~a~~Fl~el~~~Vr~~~PdvilIAE-~~s~~p~~~~p~~-~gglGFD~ 1203 (1276)
. ++..||+++++. ..|+.+++.| ++.....+...|. .|-.||||
T Consensus 260 ~------------------------dP~~Yl~rLr~~---~~~~~yivvEKIl~~~E~Lp~~W~v~GTtGYdf 305 (825)
T TIGR02401 260 A------------------------DPEGYLRRLREL---VGPARYLVVEKILAPGEHLPADWPVDGTTGYDF 305 (825)
T ss_pred C------------------------ChHHHHHHHHHh---cCCCceEEEEEeccCCCcCCCCCCcCcccCChh
Confidence 2 245699999864 3456889999 6655444444443 45678886
|
This enzyme, formally named (1-4)-alpha-D-glucan 1-alpha-D-glucosylmutase, is the TreY enzyme of the TreYZ pathway of trehalose biosynthesis, an alternative to the OtsAB pathway. Trehalose may be incorporated into more complex compounds but is best known as compatible solute. It is one of the most effective osmoprotectants, and unlike the various betaines does not require nitrogen for its synthesis. |
| >cd02854 Glycogen_branching_enzyme_like_N_term Glycogen branching enzyme-like N-terminus domain | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.8e-16 Score=152.81 Aligned_cols=86 Identities=35% Similarity=0.639 Sum_probs=79.9
Q ss_pred CceEEEEEccCCcEEEEEccCCCCccccccceecCCCeEEEEcCCCCCCCcccCcccEEEEEEEEeCCeeeeecCCcceE
Q psy9003 780 DECHKAGLLCFMHVVCAAGDFNNWNREEFAYKKLDFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHGHLLDRLSPWATY 859 (1276)
Q Consensus 780 D~a~FalwAP~A~~VsLvGDFN~wd~~~~pM~r~~~GVWsl~Ip~~~~G~~~i~hGs~YkYrV~~~dG~~~~~~DPYAka 859 (1276)
.++.|++|||+|++|+|+||||+|++..++|.+.+.|+|++++|++.+|.+++++|+.|+|+|...+|++.+++||||++
T Consensus 5 ~g~~FrvwAP~A~~V~l~GdFn~W~~~~~~m~k~~~G~W~~~i~~~~~~~~~~~~g~~Yky~i~~~~G~~~~~~DPyA~~ 84 (99)
T cd02854 5 GGVTYREWAPNAEEVYLIGDFNNWDRNAHPLKKDEFGVWEITIPPNEDGSPAIPHGSKIKVRMVTPSGEWIDRIPAWIKY 84 (99)
T ss_pred CeEEEEEECCCCCEEEEEccCCCCCCcCcccEECCCCEEEEEECCcccccccCCCCCEEEEEEEeCCCCEEEEcCcceeE
Confidence 46789999999999999999999998889999988999999999988888889999999999998889999999999999
Q ss_pred eecCCC
Q psy9003 860 VTEPPV 865 (1276)
Q Consensus 860 v~~~~~ 865 (1276)
+..++.
T Consensus 85 ~~~~~~ 90 (99)
T cd02854 85 VTQDKE 90 (99)
T ss_pred EEeCCC
Confidence 988765
|
Glycogen branching enzyme (AKA 1,4 alpha glucan branching enzyme) catalyzes the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends glycogen is more reactive to synthesis and digestion as well as being more soluble. The N-terminus of the glycogen branching enzyme-like proteins may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobi |
| >smart00642 Aamy Alpha-amylase domain | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.9e-16 Score=164.23 Aligned_cols=94 Identities=23% Similarity=0.279 Sum_probs=77.4
Q ss_pred EecCCccc--cCccCcHHHHHHhhhhHHHHcCCCCCccceeecccccccccccccceeeccCccccccccccccCCCccc
Q psy9003 901 SHVGICTQ--EQKCASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAESHDQAL 978 (1276)
Q Consensus 901 lHVr~ft~--~~~~Gtf~gl~ek~LdyLK~LGVna~d~wV~LmP~f~~eew~~~~pi~~l~~~Pi~E~~i~~~~S~~~~~ 978 (1276)
+.++.|.. ....|+|++++++ |+||++||||+ |||+|+++ . +.. ...+
T Consensus 2 i~~~~F~~~~~~~~G~~~gi~~~-l~yl~~lG~~~----I~l~Pi~~--------------------~--~~~---~~~~ 51 (166)
T smart00642 2 IYPDRFADGNGDGGGDLQGIIEK-LDYLKDLGVTA----IWLSPIFE--------------------S--PQG---YPSY 51 (166)
T ss_pred eeeccccCCCCCCCcCHHHHHHH-HHHHHHCCCCE----EEECccee--------------------C--CCC---CCCC
Confidence 45677753 4568999999997 99999999999 99995443 2 100 1256
Q ss_pred CCCccccccccccccccccCCCCCCcccccccccccCCCCCccccccccccCCCCCCHHHHHHHHHHHHHcCCEEEEEEe
Q psy9003 979 VGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVV 1058 (1276)
Q Consensus 979 WGYdp~nyf~~d~~~y~~~S~~~Dp~~~~dap~~~yas~s~hkYt~D~~~ID~~~Gt~eEfK~LV~alHk~GI~VILDvV 1058 (1276)
|||++.+|+ +++ |+||+++||++||++||++||+||||+|
T Consensus 52 ~gY~~~d~~---------------------~i~-------------------~~~Gt~~d~~~lv~~~h~~Gi~vilD~V 91 (166)
T smart00642 52 HGYDISDYK---------------------QID-------------------PRFGTMEDFKELVDAAHARGIKVILDVV 91 (166)
T ss_pred CCcCccccC---------------------CCC-------------------cccCCHHHHHHHHHHHHHCCCEEEEEEC
Confidence 899999998 444 8899999999999999999999999999
Q ss_pred ccccCC
Q psy9003 1059 HSHASK 1064 (1276)
Q Consensus 1059 ~NHt~~ 1064 (1276)
+||++.
T Consensus 92 ~NH~~~ 97 (166)
T smart00642 92 INHTSD 97 (166)
T ss_pred CCCCCC
Confidence 999987
|
|
| >PLN03244 alpha-amylase; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=6.8e-16 Score=188.49 Aligned_cols=71 Identities=18% Similarity=0.440 Sum_probs=66.8
Q ss_pred CCccHHHHHHHHHHHHHHHHHHhhccCchHHhhHHHhhccceEecCCcEEEEEEccCCceEEEEeeccCCCcc
Q psy9003 27 LNPYQYEMKRRYGLMVNFLEQFEKHEGGIEKFTTSYNKYGIHVQADNSVRCFEWAPSAQQLYLTGNVSLTPWS 99 (1276)
Q Consensus 27 L~~~~~~~~~Ry~~~~~~~~~i~~~~ggl~~Fs~~y~~fGah~~~~gg~~f~~wAP~A~~v~l~gdfn~~~w~ 99 (1276)
-+.|+.-+|-||+-.++.+.+|.+++++|+.||++|++||.|+....|+.|++|||+|+-.+|+||| |+|+
T Consensus 85 ~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~e~~g~~r~~~~~~~~~ewapga~~~~~~gdf--n~w~ 155 (872)
T PLN03244 85 DKIFAQFLRERHKALKDLKDEIFKRHFDFQDFASGFEILGMHRHMEHRVDFMDWAPGARYCAIIGDF--NGWS 155 (872)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccHHHhhhhhhhhccccCcccCceeEeecCCcceeeeeccc--cCCC
Confidence 3678999999999999999999999999999999999999999998889999999999999999999 5555
|
|
| >PHA02876 ankyrin repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=4.8e-15 Score=184.34 Aligned_cols=300 Identities=13% Similarity=-0.010 Sum_probs=162.5
Q ss_pred cCCChHHHHHHHhhhhccCCCCCccccchhhhhhcccccCCCHHHHHHHhhhhhccCCCCcccchhhhhccccccccCCC
Q psy9003 274 LFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGT 353 (1276)
Q Consensus 274 ~~~~ie~~~yli~e~~~~~~~~~~~~~t~~~~~~~~a~~~gsi~~l~~Lv~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~ 353 (1276)
..++.+++++|++.. .++-..+. .+.|++|-|+..|+++++++|++..-.++..+.+ ..+..+.|+..|+
T Consensus 154 ~~~~~~i~k~Ll~~G-advn~~d~----~G~TpLh~Aa~~G~~~iv~~LL~~Gad~n~~~~~-----g~t~L~~A~~~~~ 223 (682)
T PHA02876 154 QQDELLIAEMLLEGG-ADVNAKDI----YCITPIHYAAERGNAKMVNLLLSYGADVNIIALD-----DLSVLECAVDSKN 223 (682)
T ss_pred HCCcHHHHHHHHhCC-CCCCCCCC----CCCCHHHHHHHCCCHHHHHHHHHCCCCcCccCCC-----CCCHHHHHHHcCC
Confidence 358899999999843 33333333 3556668888899999999999986655533221 1355677788899
Q ss_pred hhhhHHhhhhhccccCCCChhhHHHHHhhhcccccCCChhHHHHHhhhcccccCCCChhhhhcccccchhccccCCH-hH
Q psy9003 354 PEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTP-EQ 432 (1276)
Q Consensus 354 ie~~~yLi~~~h~~~~~~~~e~~~~~~~~~~~a~~~~~id~vkyLi~~~h~~~~~~~~~~~~~~vt~lh~a~~~~~~-~~ 432 (1276)
+|++++|++....++.+. ..++ .++..++++.+++|+... .+.-..+..+. ||||.|+..++. ++
T Consensus 224 ~~ivk~Ll~~~~~~~~~~-~~L~--------~ai~~~~~~~~~~Ll~~g-~~vn~~d~~g~----TpLh~Aa~~~~~~~i 289 (682)
T PHA02876 224 IDTIKAIIDNRSNINKND-LSLL--------KAIRNEDLETSLLLYDAG-FSVNSIDDCKN----TPLHHASQAPSLSRL 289 (682)
T ss_pred HHHHHHHHhcCCCCCCCc-HHHH--------HHHHcCCHHHHHHHHHCC-CCCCCCCCCCC----CHHHHHHhCCCHHHH
Confidence 999999998655443322 1111 223358999999998754 34444455677 999999988886 57
Q ss_pred HHhhcccccccccCCChhhHHHHHHHHhHhccCC-ChhhHHHh--------------hhhhcccccC-CChhhhhhhhhh
Q psy9003 433 LKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFG-TPEQLKYL--------------VDECHKAGLF-GTPEQLKYLVDE 496 (1276)
Q Consensus 433 ~~yli~~~~~~~~~~~~e~l~~l~~~~~~~~~~~-~~~~~~~~--------------v~~~~~a~~~-~~~e~~~~lv~~ 496 (1276)
+++|+..+-.... .+....+.|.- +..++ ..+.++.| .|..|.|... +..+.+++|++.
T Consensus 290 v~lLl~~gadin~-~d~~g~TpLh~----Aa~~g~~~~~v~~Ll~~gadin~~d~~g~TpLh~A~~~~~~~~iv~lLl~~ 364 (682)
T PHA02876 290 VPKLLERGADVNA-KNIKGETPLYL----MAKNGYDTENIRTLIMLGADVNAADRLYITPLHQASTLDRNKDIVITLLEL 364 (682)
T ss_pred HHHHHHCCCCCCC-cCCCCCCHHHH----HHHhCCCHHHHHHHHHcCCCCCCcccCCCcHHHHHHHhCCcHHHHHHHHHc
Confidence 8888765432211 11112111111 11111 12223322 2444444432 344455555555
Q ss_pred hhhhccCCCHHHHHHHhhhhcccccCCCHHHHHHHHhhhhhcCCCCCcchhhhhhhhhhccccCC-CHHHHHHHHHhhhh
Q psy9003 497 CHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFG-TPEQLKYLVDECHK 575 (1276)
Q Consensus 497 ~~~~~~~~~~~~~~~~~t~~~~a~~~g~~e~~~~lv~~~~~~~~~~t~~~l~~~~~~~~~~~~~~-~~e~~~~l~~~~~~ 575 (1276)
.+++|.... ...|+.+.|...|+++++++|++.+++++.-+.. .-|..|.|...+ ..+.+++|++.+++
T Consensus 365 gadin~~d~-----~G~TpLh~Aa~~~~~~iv~~Ll~~gad~~~~~~~-----g~T~Lh~A~~~~~~~~~vk~Ll~~gad 434 (682)
T PHA02876 365 GANVNARDY-----CDKTPIHYAAVRNNVVIINTLLDYGADIEALSQK-----IGTALHFALCGTNPYMSVKTLIDRGAN 434 (682)
T ss_pred CCCCccCCC-----CCCCHHHHHHHcCCHHHHHHHHHCCCCccccCCC-----CCchHHHHHHcCCHHHHHHHHHhCCCC
Confidence 555554332 2345555566666666666666655555532221 112222222222 23445566665555
Q ss_pred ccCCCChhhhhhhhhhhcccccCC-CHHHHHHHHhhhhhccCC
Q psy9003 576 AGLFGTPEQLKYLVDECHKAGLFG-TPEQLKYLVDECHKAGLF 617 (1276)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~~~~~~-~~e~~~~l~~~~~~~~~~ 617 (1276)
+|....+- .|..+-|...| +++.+++|++.++++|.+
T Consensus 435 in~~d~~G-----~TpLh~Aa~~~~~~~iv~lLl~~Gad~n~~ 472 (682)
T PHA02876 435 VNSKNKDL-----STPLHYACKKNCKLDVIEMLLDNGADVNAI 472 (682)
T ss_pred CCcCCCCC-----ChHHHHHHHhCCcHHHHHHHHHCCCCCCCC
Confidence 55211111 22333333333 455666666666555544
|
|
| >PHA02876 ankyrin repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.9e-15 Score=186.20 Aligned_cols=296 Identities=13% Similarity=-0.015 Sum_probs=175.2
Q ss_pred CCChhHHHHHhhhcccccCCCChhhhhcccccchhccccCCHhHHHhhcccccccccCCChhhHHHHHHHHhHhccCCCh
Q psy9003 389 FGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTP 468 (1276)
Q Consensus 389 ~~~id~vkyLi~~~h~~~~~~~~~~~~~~vt~lh~a~~~~~~~~~~yli~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~ 468 (1276)
+|+.+++++|++..--.+ ..+..|. ||||.|+..|+.++|++|+..+--. ...+.++.. ..+-+...+..
T Consensus 155 ~~~~~i~k~Ll~~Gadvn-~~d~~G~----TpLh~Aa~~G~~~iv~~LL~~Gad~-n~~~~~g~t----~L~~A~~~~~~ 224 (682)
T PHA02876 155 QDELLIAEMLLEGGADVN-AKDIYCI----TPIHYAAERGNAKMVNLLLSYGADV-NIIALDDLS----VLECAVDSKNI 224 (682)
T ss_pred CCcHHHHHHHHhCCCCCC-CCCCCCC----CHHHHHHHCCCHHHHHHHHHCCCCc-CccCCCCCC----HHHHHHHcCCH
Confidence 577888888876554222 3344566 8888888888888888877654211 111112211 11122222333
Q ss_pred hhHHHhhh----------hhcccccCCChhhhhhhhhhhhhhccCCCHHHHHHHhhhhcccccCCCH-HHHHHHHhhhhh
Q psy9003 469 EQLKYLVD----------ECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTP-EQLKYLVDECHK 537 (1276)
Q Consensus 469 ~~~~~~v~----------~~~~a~~~~~~e~~~~lv~~~~~~~~~~~~~~~~~~~t~~~~a~~~g~~-e~~~~lv~~~~~ 537 (1276)
+++++++. ..+.|..+++.|.+.+|++.+.++|.... ...|+.+.|+..|++ +.+++|.+.+++
T Consensus 225 ~ivk~Ll~~~~~~~~~~~~L~~ai~~~~~~~~~~Ll~~g~~vn~~d~-----~g~TpLh~Aa~~~~~~~iv~lLl~~gad 299 (682)
T PHA02876 225 DTIKAIIDNRSNINKNDLSLLKAIRNEDLETSLLLYDAGFSVNSIDD-----CKNTPLHHASQAPSLSRLVPKLLERGAD 299 (682)
T ss_pred HHHHHHHhcCCCCCCCcHHHHHHHHcCCHHHHHHHHHCCCCCCCCCC-----CCCCHHHHHHhCCCHHHHHHHHHHCCCC
Confidence 44444431 23455567788888888888777776543 346788888888887 588888888888
Q ss_pred cCCCCCcchhhhhhhhhhccccCC-CHHHHHHHHHhhhhccCCCChhhhhhhhhhhccccc-CCCHHHHHHHHhhhhhcc
Q psy9003 538 AGLFGTPEQLKYLVDECHKAGLFG-TPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGL-FGTPEQLKYLVDECHKAG 615 (1276)
Q Consensus 538 ~~~~~t~~~l~~~~~~~~~~~~~~-~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~e~~~~l~~~~~~~~ 615 (1276)
+|..+. ..-|..+.|...| +.+.+++|+..++++|.....- .|..+.|.. .++.+.+++|++.++++|
T Consensus 300 in~~d~-----~g~TpLh~Aa~~g~~~~~v~~Ll~~gadin~~d~~g-----~TpLh~A~~~~~~~~iv~lLl~~gadin 369 (682)
T PHA02876 300 VNAKNI-----KGETPLYLMAKNGYDTENIRTLIMLGADVNAADRLY-----ITPLHQASTLDRNKDIVITLLELGANVN 369 (682)
T ss_pred CCCcCC-----CCCCHHHHHHHhCCCHHHHHHHHHcCCCCCCcccCC-----CcHHHHHHHhCCcHHHHHHHHHcCCCCc
Confidence 775544 2334445555677 6888888888888887322211 233333333 346788888888888887
Q ss_pred CCCChhhhhhhHHHhhhccCCCCHHHHHHHHHHHHhhcCCCChHHHhhhhhhhhhcccCCC-hhHHHHHHHHHHhhccCC
Q psy9003 616 LFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGT-PEQLKYLVDECHKAGLFG 694 (1276)
Q Consensus 616 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 694 (1276)
.+-..- .++.+-|...|.++.+++|++.....+. .-...-+++|.|...+. .+.+|+|++.-...+.
T Consensus 370 ~~d~~G-----~TpLh~Aa~~~~~~iv~~Ll~~gad~~~-----~~~~g~T~Lh~A~~~~~~~~~vk~Ll~~gadin~-- 437 (682)
T PHA02876 370 ARDYCD-----KTPIHYAAVRNNVVIINTLLDYGADIEA-----LSQKIGTALHFALCGTNPYMSVKTLIDRGANVNS-- 437 (682)
T ss_pred cCCCCC-----CCHHHHHHHcCCHHHHHHHHHCCCCccc-----cCCCCCchHHHHHHcCCHHHHHHHHHhCCCCCCc--
Confidence 654433 5677777777888988888864322111 11122357777766554 4567777762211110
Q ss_pred ChhHHHhhHHHHhhcccCC-CHHHHHHHHHH
Q psy9003 695 TPEQLKYLVDECHKAGLFG-TPEQLKYLVDE 724 (1276)
Q Consensus 695 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 724 (1276)
+=+.--+.+|-|+..| +++.+++|++.
T Consensus 438 ---~d~~G~TpLh~Aa~~~~~~~iv~lLl~~ 465 (682)
T PHA02876 438 ---KNKDLSTPLHYACKKNCKLDVIEMLLDN 465 (682)
T ss_pred ---CCCCCChHHHHHHHhCCcHHHHHHHHHC
Confidence 0012234566666655 56777777653
|
|
| >PHA02946 ankyin-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.2e-13 Score=164.57 Aligned_cols=283 Identities=11% Similarity=-0.001 Sum_probs=163.3
Q ss_pred CChhHHHHHhhhcccccCCCChhhhhcccccchhccccCCHhHHHhhcccccccccCCChhhHHHHHHHHhHhccCCChh
Q psy9003 390 GTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPE 469 (1276)
Q Consensus 390 ~~id~vkyLi~~~h~~~~~~~~~~~~~~vt~lh~a~~~~~~~~~~yli~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~~ 469 (1276)
++.|+|++|+... +++-..+.++. ||||.|+..|+.++|++||..+-. ....+.+.
T Consensus 50 ~~~~iv~~Ll~~G-advn~~d~~G~----TpLh~Aa~~g~~eiv~lLL~~GAd-in~~d~~g------------------ 105 (446)
T PHA02946 50 LDERFVEELLHRG-YSPNETDDDGN----YPLHIASKINNNRIVAMLLTHGAD-PNACDKQH------------------ 105 (446)
T ss_pred CCHHHHHHHHHCc-CCCCccCCCCC----CHHHHHHHcCCHHHHHHHHHCcCC-CCCCCCCC------------------
Confidence 4677788887643 45555666677 888888888888888877764421 11112121
Q ss_pred hHHHhhhhhcccccC--CChhhhhhhhhhhhhhccCCCHHHHHHHhhhhcccccCCCHHHHHHHHhhhhhcCCCCCcchh
Q psy9003 470 QLKYLVDECHKAGLF--GTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQL 547 (1276)
Q Consensus 470 ~~~~~v~~~~~a~~~--~~~e~~~~lv~~~~~~~~~~~~~~~~~~~t~~~~a~~~g~~e~~~~lv~~~~~~~~~~t~~~l 547 (1276)
.|..|.|... +.+|-+++|+..++++|..... ...|+.+ |+..|+.+++++|+..+++++..+.
T Consensus 106 -----~TpLh~A~~~~~~~~e~v~lLl~~Gadin~~~d~----~g~tpL~-aa~~~~~~vv~~Ll~~gad~~~~d~---- 171 (446)
T PHA02946 106 -----KTPLYYLSGTDDEVIERINLLVQYGAKINNSVDE----EGCGPLL-ACTDPSERVFKKIMSIGFEARIVDK---- 171 (446)
T ss_pred -----CCHHHHHHHcCCchHHHHHHHHHcCCCcccccCC----CCCcHHH-HHHCCChHHHHHHHhccccccccCC----
Confidence 3444443322 3466667777766666642211 1123332 3445777777777777766664444
Q ss_pred hhhhhhhhcccc--CCCHHHHHHHHHhhhhccC--CCChhhhhhhhhhhcccccC--CCHHHHHHHHhhhhhccCCCChh
Q psy9003 548 KYLVDECHKAGL--FGTPEQLKYLVDECHKAGL--FGTPEQLKYLVDECHKAGLF--GTPEQLKYLVDECHKAGLFGTPE 621 (1276)
Q Consensus 548 ~~~~~~~~~~~~--~~~~e~~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~--~~~e~~~~l~~~~~~~~~~~~~~ 621 (1276)
+.-|..+.|+. .+.++.+++|.+.++++|. +....-|++.+ .+ ++++.+++|+. ++++|.+-..-
T Consensus 172 -~G~t~Lh~A~~~~~~~~~~v~~Ll~~Gadin~~d~~G~TpLH~Aa-------~~~~~~~~iv~lLl~-gadin~~d~~G 242 (446)
T PHA02946 172 -FGKNHIHRHLMSDNPKASTISWMMKLGISPSKPDHDGNTPLHIVC-------SKTVKNVDIINLLLP-STDVNKQNKFG 242 (446)
T ss_pred -CCCCHHHHHHHhcCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHH-------HcCCCcHHHHHHHHc-CCCCCCCCCCC
Confidence 33333333332 3446777777777777762 23333333333 33 36777777764 56665443222
Q ss_pred hhhhhHHHhhhccCCCCH-HHHHHHHHHHH--------hhcCCCChHH---H-----hhhhhhhhhcccCCChhHHHHHH
Q psy9003 622 QLKYLVDECHKAGLFGTP-EQLKYLVDECH--------KAGLFGTPEQ---L-----KYLVDECHKAGLFGTPEQLKYLV 684 (1276)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--------~~~~~~~~~~---~-----~~~~~~~~~~~~~~~~~~~~~~~ 684 (1276)
-++.+-|...++. +.+++|..... .+-+++..+. + ++.-+++|.|..+|+.|.+|+|+
T Consensus 243 -----~TpLh~A~~~~~~~~~~~~Ll~~g~~~~~~~~~~a~~~~~~~~~e~l~~~g~~~~~TpLh~Aa~~g~~eivk~Ll 317 (446)
T PHA02946 243 -----DSPLTLLIKTLSPAHLINKLLSTSNVITDQTVNICIFYDRDDVLEIINDKGKQYDSTDFKMAVEVGSIRCVKYLL 317 (446)
T ss_pred -----CCHHHHHHHhCChHHHHHHHHhCCCCCCCcHHHHHHHcCchHHHHHHHHcCcccCCCHHHHHHHcCCHHHHHHHH
Confidence 3444444444553 55666654211 1111111111 1 12336899999999999999999
Q ss_pred H-------HHHhhccCCChhHHHhhHH-------------HHhhcccCCCHHHHHHHHHH
Q psy9003 685 D-------ECHKAGLFGTPEQLKYLVD-------------ECHKAGLFGTPEQLKYLVDE 724 (1276)
Q Consensus 685 ~-------~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~ 724 (1276)
+ ++|-|-++++.|.+++|+. ++|-|..+++.+.++.|+..
T Consensus 318 ~~~~~~~t~L~~A~~~~~~~~v~~Ll~~ga~~n~~~~G~t~l~~a~~~~~~~~~~~ll~~ 377 (446)
T PHA02946 318 DNDIICEDAMYYAVLSEYETMVDYLLFNHFSVDSVVNGHTCMSECVRLNNPVILSKLMLH 377 (446)
T ss_pred HCCCccccHHHHHHHhCHHHHHHHHHHCCCCCCCccccccHHHHHHHcCCHHHHHHHHhc
Confidence 8 6777777777777877765 47888888888888888873
|
|
| >PHA02917 ankyrin-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=3.8e-13 Score=167.22 Aligned_cols=339 Identities=10% Similarity=-0.057 Sum_probs=194.7
Q ss_pred hhcccccCCCHHHHHHHhhhhhccCCCCcccchhhhhccccccc--cCCChhhhHHhhhhhccccCC-CCh---------
Q psy9003 306 ECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAG--LFGTPEQLKYLVDECHKAGLF-GTP--------- 373 (1276)
Q Consensus 306 ~~~~a~~~gsi~~l~~Lv~~~~~~~~~~~~~~~~~~~~~~~~a~--~~g~ie~~~yLi~~~h~~~~~-~~~--------- 373 (1276)
.++.|+..|++|++++|++..-.++..+. . .-|+.+.++ ..|+.|+|++|+.-.-.++.. ..+
T Consensus 106 ~~~~a~~~~~~e~vk~Ll~~Gadin~~d~--~---g~T~L~~~~a~~~~~~eivklLi~~Ga~vn~~d~~~~~g~~~~~~ 180 (661)
T PHA02917 106 FSYMKSKNVDVDLIKVLVEHGFDLSVKCE--N---HRSVIENYVMTDDPVPEIIDLFIENGCSVLYEDEDDEYGYAYDDY 180 (661)
T ss_pred HHHHHhhcCCHHHHHHHHHcCCCCCccCC--C---CccHHHHHHHccCCCHHHHHHHHHcCCCccccccccccccccccc
Confidence 34567778999999999988665554322 1 123334332 358999999999865443321 111
Q ss_pred -----hhHHHHHhhhc-----ccccCCChhHHHHHhhhcccccCCCChhhhhcccccchhccccCCH--hHHHhhccccc
Q psy9003 374 -----EQLKYLVDECH-----KAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTP--EQLKYLVDECH 441 (1276)
Q Consensus 374 -----e~~~~~~~~~~-----~a~~~~~id~vkyLi~~~h~~~~~~~~~~~~~~vt~lh~a~~~~~~--~~~~yli~~~~ 441 (1276)
....+....++ ...-.++.|+|++||.-. .+.-..+..|. ||||.|+..|++ |+|++|+..
T Consensus 181 ~~~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~G-advn~~d~~G~----TpLh~A~~~g~~~~eivk~Li~g-- 253 (661)
T PHA02917 181 QPRNCGTVLHLYIISHLYSESDTRAYVRPEVVKCLINHG-IKPSSIDKNYC----TALQYYIKSSHIDIDIVKLLMKG-- 253 (661)
T ss_pred cccccccHHHHHHhhcccccccccccCcHHHHHHHHHCC-CCcccCCCCCC----cHHHHHHHcCCCcHHHHHHHHhC--
Confidence 12333222110 011236899999999665 33444466777 999999999986 799999853
Q ss_pred ccccC-CChhhHH-HHHHHHhH----hcc---CCChhhHHHhhhhhc--------ccccCCChhhhhhhhhhhhhhccCC
Q psy9003 442 KAGLF-GTPEQLK-YLVDECHK----AGL---FGTPEQLKYLVDECH--------KAGLFGTPEQLKYLVDECHKAGLFG 504 (1276)
Q Consensus 442 ~~~~~-~~~e~l~-~l~~~~~~----~~~---~~~~~~~~~~v~~~~--------~a~~~~~~e~~~~lv~~~~~~~~~~ 504 (1276)
++..+ .+++... ..-...|- ..+ ....|+++.||.... .+.--++.|-+++|.. ..+
T Consensus 254 ~d~~~~~~~~~~~~~~~~~~a~yl~~~~~~~~~v~~~iv~~Li~~Ga~~~~~~~~~~~~~~~~~~~~~~~~------~~~ 327 (661)
T PHA02917 254 IDNTAYSYIDDLTCCTRGIMADYLNSDYRYNKDVDLDLVKLFLENGKPHGIMCSIVPLWRNDKETISLILK------TMN 327 (661)
T ss_pred CcccccccccCcccccchHHHHHHHhhccccccchHHHHHHHHhCCCCCceeEeeecccccchHHHHHHHH------Hhc
Confidence 22221 1111100 00001110 011 225677777765542 2223355555555552 111
Q ss_pred CHHHHHHHhhhhcccccCCC--HHHHHHHHhhhhhcCCCCCcchhhhhhhhhhccccCCCHHHHHHHHH-hhhhccC--C
Q psy9003 505 TPEQLKYLVDECHKAGLFGT--PEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVD-ECHKAGL--F 579 (1276)
Q Consensus 505 ~~~~~~~~~t~~~~a~~~g~--~e~~~~lv~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~e~~~~l~~-~~~~~~~--~ 579 (1276)
..=+ .+...+++..|+ ++++++|++.++++|...- +..+ ++.+.+.+.+++|+. .++.++. +
T Consensus 328 ~~~~----~~~l~~~~~~g~~~~~~v~~Ll~~GAdvn~~~~-----~g~~----~~~~~~~~~i~~LL~~~ga~~~~~~~ 394 (661)
T PHA02917 328 SDVL----QHILIEYMTFGDIDIPLVECMLEYGAVVNKEAI-----HGYF----RNINIDSYTMKYLLKKEGGDAVNHLD 394 (661)
T ss_pred hHHH----HHHHHHHHHcCCCcHHHHHHHHHcCCCCCCCCc-----cccc----hhhcCCHHHHHHHHHhcCCCccccCC
Confidence 1111 223333444555 7799999999999985322 2222 345788999999997 4766662 2
Q ss_pred CChhhhhhhhhhhc-------cccc---------CCCHHHHHHHHhhhhhccCCCChhhhhhhHHHhhhccCCCCHHHHH
Q psy9003 580 GTPEQLKYLVDECH-------KAGL---------FGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLK 643 (1276)
Q Consensus 580 ~~~~~~~~~~~~~~-------~~~~---------~~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 643 (1276)
.+..-|+..|.+.. -.+. .+.++.+++|+..++++|.+-..- .+.++.|..++..+.++
T Consensus 395 ~G~TpL~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Ll~~GAdIN~kd~~G-----~TpLh~Aa~~~~~~~v~ 469 (661)
T PHA02917 395 DGEIPIGHLCKSNYGCYNFYTYTYKKGLCDMSYACPILSTINICLPYLKDINMIDKRG-----ETLLHKAVRYNKQSLVS 469 (661)
T ss_pred CCCChhHHHHHhcccchhhhhhhhhhccchhhhhhhhHHHHHHHHHCCCCCCCCCCCC-----cCHHHHHHHcCCHHHHH
Confidence 22222333231100 0011 235778899999999998765444 67788888889999999
Q ss_pred HHHHHHHhhcCCCChHHHhhhhhhhhhccc-CCChhHHHHHHH
Q psy9003 644 YLVDECHKAGLFGTPEQLKYLVDECHKAGL-FGTPEQLKYLVD 685 (1276)
Q Consensus 644 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 685 (1276)
+|+..-...+. .=.+-.+.+|.|.. .++.+++++|+.
T Consensus 470 ~Ll~~GAdin~-----~d~~G~T~L~~A~~~~~~~~iv~~LL~ 507 (661)
T PHA02917 470 LLLESGSDVNI-----RSNNGYTCIAIAINESRNIELLKMLLC 507 (661)
T ss_pred HHHHCcCCCCC-----CCCCCCCHHHHHHHhCCCHHHHHHHHH
Confidence 99874333221 01223457888875 678888888885
|
|
| >PRK14511 maltooligosyl trehalose synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.1e-13 Score=170.72 Aligned_cols=82 Identities=18% Similarity=0.283 Sum_probs=69.7
Q ss_pred CcHHHHHHhhhhHHHHcCCCCCccceeecccccccccccccceeeccCccccccccccccCCCcccCCCccccccccccc
Q psy9003 913 ASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAESHDQALVGDKTIAFWLMDKE 992 (1276)
Q Consensus 913 Gtf~gl~ek~LdyLK~LGVna~d~wV~LmP~f~~eew~~~~pi~~l~~~Pi~E~~i~~~~S~~~~~WGYdp~nyf~~d~~ 992 (1276)
++|.+++++ ||||++||||+ |||+|+|+ . .+..+|||++.||+
T Consensus 17 ~tf~~~~~~-l~YL~~LGis~----IyLsPi~~--------------------a-------~~gs~hGYdv~D~~----- 59 (879)
T PRK14511 17 FTFDDAAEL-VPYFADLGVSH----LYLSPILA--------------------A-------RPGSTHGYDVVDHT----- 59 (879)
T ss_pred CCHHHHHHH-hHHHHHcCCCE----EEECcCcc--------------------C-------CCCCCCCCCcCCCC-----
Confidence 689999985 99999999999 99995442 1 11235899988888
Q ss_pred cccccCCCCCCcccccccccccCCCCCccccccccccCCCCCCHHHHHHHHHHHHHcCCEEEEEEeccccCCcc
Q psy9003 993 MYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNV 1066 (1276)
Q Consensus 993 ~y~~~S~~~Dp~~~~dap~~~yas~s~hkYt~D~~~ID~~~Gt~eEfK~LV~alHk~GI~VILDvV~NHt~~~~ 1066 (1276)
. |||.+|+.++|++||++||++||+||||+|+||++.++
T Consensus 60 ----------------~-------------------idp~lGt~e~f~~Lv~aah~~Gi~VIlDiV~NH~~~~~ 98 (879)
T PRK14511 60 ----------------R-------------------INPELGGEEGLRRLAAALRAHGMGLILDIVPNHMAVGG 98 (879)
T ss_pred ----------------C-------------------cCCCCCCHHHHHHHHHHHHHCCCEEEEEeccccccCcC
Confidence 3 44899999999999999999999999999999999765
|
|
| >PHA02946 ankyin-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.6e-13 Score=161.80 Aligned_cols=77 Identities=5% Similarity=-0.060 Sum_probs=35.2
Q ss_pred hhhhhhhhhhhhhhccCCCHHHHHHHhhhhcccccCC--CHHHHHHHHhhhhhcCCCCCcchhhhhhhhhhccccCCCH-
Q psy9003 487 PEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFG--TPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTP- 563 (1276)
Q Consensus 487 ~e~~~~lv~~~~~~~~~~~~~~~~~~~t~~~~a~~~g--~~e~~~~lv~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~- 563 (1276)
.+.+++|++.+.++|.+.. ...|+.|.|...| +++++++|+. ++++|.-+. +.-|..+.|...++.
T Consensus 188 ~~~v~~Ll~~Gadin~~d~-----~G~TpLH~Aa~~~~~~~~iv~lLl~-gadin~~d~-----~G~TpLh~A~~~~~~~ 256 (446)
T PHA02946 188 ASTISWMMKLGISPSKPDH-----DGNTPLHIVCSKTVKNVDIINLLLP-STDVNKQNK-----FGDSPLTLLIKTLSPA 256 (446)
T ss_pred HHHHHHHHHcCCCCcccCC-----CCCCHHHHHHHcCCCcHHHHHHHHc-CCCCCCCCC-----CCCCHHHHHHHhCChH
Confidence 3445555555555544332 2345555555543 5555555553 444443322 222333333344442
Q ss_pred HHHHHHHHhhh
Q psy9003 564 EQLKYLVDECH 574 (1276)
Q Consensus 564 e~~~~l~~~~~ 574 (1276)
|.+++|...++
T Consensus 257 ~~~~~Ll~~g~ 267 (446)
T PHA02946 257 HLINKLLSTSN 267 (446)
T ss_pred HHHHHHHhCCC
Confidence 45555555443
|
|
| >PHA02874 ankyrin repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.3e-13 Score=162.75 Aligned_cols=301 Identities=13% Similarity=0.022 Sum_probs=202.7
Q ss_pred ccCCChHHHHHHHhhhhccCCCCCccccchhhhhhcccccCCCHHHHHHHhhhhhccCCCCcccchhhhhccccccccCC
Q psy9003 273 GLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFG 352 (1276)
Q Consensus 273 ~~~~~ie~~~yli~e~~~~~~~~~~~~~t~~~~~~~~a~~~gsi~~l~~Lv~~~~~~~~~~~~~~~~~~~~~~~~a~~~g 352 (1276)
...|++|.|+.|+.+........+.. ..|+++.|+..|+.+++++|++..-..+. .+. ...++.+.|+..|
T Consensus 9 i~~gd~~~v~~ll~~~~~~~n~~~~~----~~tpL~~A~~~g~~~iv~~Ll~~Ga~~n~--~~~---~~~t~L~~A~~~~ 79 (434)
T PHA02874 9 IYSGDIEAIEKIIKNKGNCINISVDE----TTTPLIDAIRSGDAKIVELFIKHGADINH--INT---KIPHPLLTAIKIG 79 (434)
T ss_pred HhcCCHHHHHHHHHcCCCCCCCcCCC----CCCHHHHHHHcCCHHHHHHHHHCCCCCCC--CCC---CCCCHHHHHHHcC
Confidence 34567777888876543222222222 34666888889999999999987544432 111 1235667888999
Q ss_pred ChhhhHHhhhhhccccCCCChhhHHHHHhhhcccccCCChhHHHHHhhhcccccCCCChhhhhcccccchhccccCCHhH
Q psy9003 353 TPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQ 432 (1276)
Q Consensus 353 ~ie~~~yLi~~~h~~~~~~~~e~~~~~~~~~~~a~~~~~id~vkyLi~~~h~~~~~~~~~~~~~~vt~lh~a~~~~~~~~ 432 (1276)
++|++++|++-.-....- .....+.|++++|+.. ..++...+..+. ||||.|+..|+.++
T Consensus 80 ~~~iv~~Ll~~g~~~~~~---------------~~~~~~~~~i~~ll~~-g~d~n~~~~~g~----T~Lh~A~~~~~~~~ 139 (434)
T PHA02874 80 AHDIIKLLIDNGVDTSIL---------------PIPCIEKDMIKTILDC-GIDVNIKDAELK----TFLHYAIKKGDLES 139 (434)
T ss_pred CHHHHHHHHHCCCCCCcc---------------hhccCCHHHHHHHHHC-cCCCCCCCCCCc----cHHHHHHHCCCHHH
Confidence 999999998754311110 1113467899999874 345555667777 99999999999999
Q ss_pred HHhhcccccccccCCChhhHHHHHHHHhHhccCCChhhHHHhhhhhcccccCCChhhhhhhhhhhhhhccCCCHHHHHHH
Q psy9003 433 LKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYL 512 (1276)
Q Consensus 433 ~~yli~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~~~~~~~v~~~~~a~~~~~~e~~~~lv~~~~~~~~~~~~~~~~~~ 512 (1276)
|++|+..+.- ++..+... -|..|.|...++.|.+++|++.....+.... ..
T Consensus 140 v~~Ll~~gad-------------------~n~~d~~g-----~tpLh~A~~~~~~~iv~~Ll~~g~~~n~~~~-----~g 190 (434)
T PHA02874 140 IKMLFEYGAD-------------------VNIEDDNG-----CYPIHIAIKHNFFDIIKLLLEKGAYANVKDN-----NG 190 (434)
T ss_pred HHHHHhCCCC-------------------CCCcCCCC-----CCHHHHHHHCCcHHHHHHHHHCCCCCCCCCC-----CC
Confidence 9999875421 11111112 4677888888999999999998887776554 45
Q ss_pred hhhhcccccCCCHHHHHHHHhhhhhcCCCCCcchhhhhhhhhhccccCCCHHHHHHHHHhhhhccCCCChhhhhhhhhhh
Q psy9003 513 VDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDEC 592 (1276)
Q Consensus 513 ~t~~~~a~~~g~~e~~~~lv~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 592 (1276)
.|+.+.|...|+.+++++|.+.+.+++..+. +.-|..+.|...+ .+.+.+|. .++++|....+ --|..
T Consensus 191 ~tpL~~A~~~g~~~iv~~Ll~~g~~i~~~~~-----~g~TpL~~A~~~~-~~~i~~Ll-~~~~in~~d~~-----G~TpL 258 (434)
T PHA02874 191 ESPLHNAAEYGDYACIKLLIDHGNHIMNKCK-----NGFTPLHNAIIHN-RSAIELLI-NNASINDQDID-----GSTPL 258 (434)
T ss_pred CCHHHHHHHcCCHHHHHHHHhCCCCCcCCCC-----CCCCHHHHHHHCC-hHHHHHHH-cCCCCCCcCCC-----CCCHH
Confidence 7889999999999999999999988875554 3334445554544 45666666 45666622111 13444
Q ss_pred cccccCC-CHHHHHHHHhhhhhccCCCChhhhhhhHHHhhhccCCC-CHHHHHHHHHH
Q psy9003 593 HKAGLFG-TPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFG-TPEQLKYLVDE 648 (1276)
Q Consensus 593 ~~~~~~~-~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 648 (1276)
+-|..++ +.+.+++|+..++++|.+-+.- -++.+-|..++ ..+.+|.|+..
T Consensus 259 h~A~~~~~~~~iv~~Ll~~gad~n~~d~~g-----~TpL~~A~~~~~~~~~ik~ll~~ 311 (434)
T PHA02874 259 HHAINPPCDIDIIDILLYHKADISIKDNKG-----ENPIDTAFKYINKDPVIKDIIAN 311 (434)
T ss_pred HHHHhcCCcHHHHHHHHHCcCCCCCCCCCC-----CCHHHHHHHhCCccHHHHHHHHh
Confidence 4454555 8899999999999998875544 44555555555 56677777763
|
|
| >PHA02917 ankyrin-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=4.1e-13 Score=166.94 Aligned_cols=381 Identities=11% Similarity=-0.027 Sum_probs=222.3
Q ss_pred CCCcchhhhhhhccccccCCCCccccchhhhhhhcccCCCCHHH----HHhhhhh------------hcccccCCChHHH
Q psy9003 218 FGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQ----LKYLVDE------------CHKAGLFGTPEQL 281 (1276)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~g~~~~----~~~li~~------------~h~~~~~~~ie~~ 281 (1276)
+++.|++++|++ +.+++- .......+.+|.|+..|..++ ++.|+.. .|.|...+++|+|
T Consensus 45 ~~~~~~v~~Ll~-~ga~v~----~~~~~g~TpL~~Aa~~g~~~v~~~~~~~Ll~~~~~~n~~~~~~~~~~a~~~~~~e~v 119 (661)
T PHA02917 45 CNNVEVVKLLLD-SGTNPL----HKNWRQLTPLEEYTNSRHVKVNKDIAMALLEATGYSNINDFNIFSYMKSKNVDVDLI 119 (661)
T ss_pred cCcHHHHHHHHH-CCCCcc----ccCCCCCCHHHHHHHcCChhHHHHHHHHHHhccCCCCCCCcchHHHHHhhcCCHHHH
Confidence 355666676663 344443 222333445577777676443 3445422 1345556899999
Q ss_pred HHHHhhhhccCCCCCccccchhhhhhcccccCCCHHHHHHHhhhhhccCCCCcccchhh-----------hhcccccccc
Q psy9003 282 KYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKY-----------LVDECHKAGL 350 (1276)
Q Consensus 282 ~yli~e~~~~~~~~~~~~~t~~~~~~~~a~~~gsi~~l~~Lv~~~~~~~~~~~~~~~~~-----------~~~~~~~a~~ 350 (1276)
|+||+- ..|+-..+..|.|.++..+ +...|+.|++++|+++.-.++. .|.-.++ .-|+.|.|+.
T Consensus 120 k~Ll~~-Gadin~~d~~g~T~L~~~~--a~~~~~~eivklLi~~Ga~vn~--~d~~~~~g~~~~~~~~~~~~t~L~~a~~ 194 (661)
T PHA02917 120 KVLVEH-GFDLSVKCENHRSVIENYV--MTDDPVPEIIDLFIENGCSVLY--EDEDDEYGYAYDDYQPRNCGTVLHLYII 194 (661)
T ss_pred HHHHHc-CCCCCccCCCCccHHHHHH--HccCCCHHHHHHHHHcCCCccc--cccccccccccccccccccccHHHHHHh
Confidence 999963 4555444545555554211 1236999999999987644432 1110000 0133444432
Q ss_pred -----------CCChhhhHHhhhhhccccC-CCChhhHHHHHhhhcccccCCCh--hHHHHHhhhcccccCCCChhhhhc
Q psy9003 351 -----------FGTPEQLKYLVDECHKAGL-FGTPEQLKYLVDECHKAGLFGTP--EQLKYLVDECHKAGLFGTPEQLKY 416 (1276)
Q Consensus 351 -----------~g~ie~~~yLi~~~h~~~~-~~~~e~~~~~~~~~~~a~~~~~i--d~vkyLi~~~h~~~~~~~~~~~~~ 416 (1276)
.|+.|+|++||.-.-.++. +.....- .+.|+..|++ |+|++|+. .++..+.....-..
T Consensus 195 ~~~~~~~~~~~~~~~eiv~~Li~~Gadvn~~d~~G~Tp------Lh~A~~~g~~~~eivk~Li~--g~d~~~~~~~~~~~ 266 (661)
T PHA02917 195 SHLYSESDTRAYVRPEVVKCLINHGIKPSSIDKNYCTA------LQYYIKSSHIDIDIVKLLMK--GIDNTAYSYIDDLT 266 (661)
T ss_pred hcccccccccccCcHHHHHHHHHCCCCcccCCCCCCcH------HHHHHHcCCCcHHHHHHHHh--CCcccccccccCcc
Confidence 5689999999987765553 2222222 2233334675 79999985 44444322111112
Q ss_pred ccccchhccc---------cCCHhHHHhhccccc-----ccccC---CChhhHHHHHHHHhHhccCCChhhHHHhhhhhc
Q psy9003 417 LVDECHKAGL---------FGTPEQLKYLVDECH-----KAGLF---GTPEQLKYLVDECHKAGLFGTPEQLKYLVDECH 479 (1276)
Q Consensus 417 ~vt~lh~a~~---------~~~~~~~~yli~~~~-----~~~~~---~~~e~l~~l~~~~~~~~~~~~~~~~~~~v~~~~ 479 (1276)
..|++|.|+. ....++|+.||..+. |.+.+ .+.|-++++.. ..+++=++.. ..
T Consensus 267 ~~~~~~~a~yl~~~~~~~~~v~~~iv~~Li~~Ga~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~----l~ 336 (661)
T PHA02917 267 CCTRGIMADYLNSDYRYNKDVDLDLVKLFLENGKPHGIMCSIVPLWRNDKETISLILK------TMNSDVLQHI----LI 336 (661)
T ss_pred cccchHHHHHHHhhccccccchHHHHHHHHhCCCCCceeEeeecccccchHHHHHHHH------HhchHHHHHH----HH
Confidence 3477888872 127799999999884 22212 23233333331 1111112111 22
Q ss_pred ccccCCC--hhhhhhhhhhhhhhccCCCHHHHHHHhhhhcccccCCCHHHHHHHHh-hhhhcCCCCCcc--hhhhhhh--
Q psy9003 480 KAGLFGT--PEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVD-ECHKAGLFGTPE--QLKYLVD-- 552 (1276)
Q Consensus 480 ~a~~~~~--~e~~~~lv~~~~~~~~~~~~~~~~~~~t~~~~a~~~g~~e~~~~lv~-~~~~~~~~~t~~--~l~~~~~-- 552 (1276)
++...|+ ++-+++|++.++.+|.+.- ...| ++.+.+.+++++|+. .++.++..+.+. .|+..+-
T Consensus 337 ~~~~~g~~~~~~v~~Ll~~GAdvn~~~~-----~g~~----~~~~~~~~~i~~LL~~~ga~~~~~~~~G~TpL~~a~~~~ 407 (661)
T PHA02917 337 EYMTFGDIDIPLVECMLEYGAVVNKEAI-----HGYF----RNINIDSYTMKYLLKKEGGDAVNHLDDGEIPIGHLCKSN 407 (661)
T ss_pred HHHHcCCCcHHHHHHHHHcCCCCCCCCc-----cccc----hhhcCCHHHHHHHHHhcCCCccccCCCCCChhHHHHHhc
Confidence 2333454 6689999999999996531 1112 334778889999997 466655333222 4443321
Q ss_pred ----------------hhhccccCCCHHHHHHHHHhhhhccCCCChhhhhhhhhhhcccccCCCHHHHHHHHhhhhhccC
Q psy9003 553 ----------------ECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGL 616 (1276)
Q Consensus 553 ----------------~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~ 616 (1276)
.+.++. +.++.++.|...+++||...... -|..+.|..+++.+.+++|+..++++|.
T Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~Ll~~GAdIN~kd~~G-----~TpLh~Aa~~~~~~~v~~Ll~~GAdin~ 480 (661)
T PHA02917 408 YGCYNFYTYTYKKGLCDMSYAC--PILSTINICLPYLKDINMIDKRG-----ETLLHKAVRYNKQSLVSLLLESGSDVNI 480 (661)
T ss_pred ccchhhhhhhhhhccchhhhhh--hhHHHHHHHHHCCCCCCCCCCCC-----cCHHHHHHHcCCHHHHHHHHHCcCCCCC
Confidence 111222 25888999999999999333222 4555566678999999999999999988
Q ss_pred CCChhhhhhhHHHhhhccC-CCCHHHHHHHHH
Q psy9003 617 FGTPEQLKYLVDECHKAGL-FGTPEQLKYLVD 647 (1276)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 647 (1276)
+-... .++++.|.. .+..+.++.|+.
T Consensus 481 ~d~~G-----~T~L~~A~~~~~~~~iv~~LL~ 507 (661)
T PHA02917 481 RSNNG-----YTCIAIAINESRNIELLKMLLC 507 (661)
T ss_pred CCCCC-----CCHHHHHHHhCCCHHHHHHHHH
Confidence 76555 667777764 578899998885
|
|
| >TIGR02104 pulA_typeI pullulanase, type I | Back alignment and domain information |
|---|
Probab=99.47 E-value=8.8e-14 Score=171.50 Aligned_cols=95 Identities=15% Similarity=0.019 Sum_probs=75.9
Q ss_pred hccceEecCCcEEEEEEccCCceEEEEeecc-CCCc---c---e------EEEEEccCccccceEEEEEecCCC------
Q psy9003 64 KYGIHVQADNSVRCFEWAPSAQQLYLTGNVS-LTPW---S---I------MEEASLSSIKLIQSIQYILTGVFG------ 124 (1276)
Q Consensus 64 ~fGah~~~~gg~~f~~wAP~A~~v~l~gdfn-~~~w---~---m------~~~~~~~~~~~g~~yky~i~~~~g------ 124 (1276)
.+|||...+ |++|++|||+|++|.|++ |+ |++. . | +|+++||+++.|+.|+|+|.+.++
T Consensus 11 ~lG~~~~~~-~~~F~vwaP~a~~V~l~~-~~~~~~~~~~~~~~m~~~~~gvw~~~i~~~~~g~~Y~y~v~~~~~~~~~~D 88 (605)
T TIGR02104 11 ELGAVYTPE-KTVFRVWAPTATEVELLL-YKSGEDGEPYKVVKMKRGENGVWSAVLEGDLHGYFYTYQVCINGKWRETVD 88 (605)
T ss_pred CCccEEECC-eeEEEEECCCCCEEEEEE-EcCCCCCccceEEecccCCCCEEEEEECCCCCCCEEEEEEEcCCCeEEEcC
Confidence 799998665 599999999999999998 74 5432 2 5 999999999999999999987443
Q ss_pred -------CCCccccccc--------------------------ccccccCC-----------ChHHHHHH----------
Q psy9003 125 -------TPEQLKYLVD--------------------------ECHKAGLF-----------GTPEQLKY---------- 150 (1276)
Q Consensus 125 -------rp~~as~~~d--------------------------e~h~gs~~-----------~y~e~a~~---------- 150 (1276)
-++.+|+|+| |+|+++|- +|+.+++.
T Consensus 89 Pya~~~~~~~~~s~v~d~~~~~~~~w~~~~~~~~~~~~~~vIYElhv~~ft~~~~~~~~~~G~f~~~~e~~~~~~~g~~~ 168 (605)
T TIGR02104 89 PYAKAVTVNGKRGAVIDLERTNPEGWEKDHRPRLENPEDAIIYELHIRDFSIHENSGVKNKGKYLGLTETGTKGPNGVST 168 (605)
T ss_pred CCcceeccCCCcEEEEcccccCccCcccccCCCCCChhHcEEEEEecchhccCCCCCcCCCCceeeeeccCccccccchh
Confidence 2234566655 99999864 57777765
Q ss_pred HHHHHHhcCc
Q psy9003 151 LVDECHKAGL 160 (1276)
Q Consensus 151 li~y~~~~~y 160 (1276)
-+||+|++|+
T Consensus 169 ~LdyL~~LGv 178 (605)
T TIGR02104 169 GLDYLKELGV 178 (605)
T ss_pred HHHHHHHcCC
Confidence 4899999998
|
Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases. |
| >cd02860 Pullulanase_N_term Pullulanase domain N-terminus | Back alignment and domain information |
|---|
Probab=99.47 E-value=2e-13 Score=131.02 Aligned_cols=91 Identities=13% Similarity=0.103 Sum_probs=77.0
Q ss_pred ccCeeecCceEEEEEccCCcEEEEEccCCCCc----cccccceecCCCeEEEEcCCCCCCCcccCcccEEEEEEEEeCCe
Q psy9003 773 EQLKYLVDECHKAGLLCFMHVVCAAGDFNNWN----REEFAYKKLDFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHGH 848 (1276)
Q Consensus 773 ~G~~y~~D~a~FalwAP~A~~VsLvGDFN~wd----~~~~pM~r~~~GVWsl~Ip~~~~G~~~i~hGs~YkYrV~~~dG~ 848 (1276)
+|+++..++++|++|||+|++|+|+. |++|+ ...++|.+..+|+|++++++...| ..|+|+|.+.++.
T Consensus 1 lGa~~~~~~~~F~vwAP~A~~V~L~l-~~~~~~~~~~~~~~m~~~~~gvw~~~v~~~~~g-------~~Y~y~i~~~~~~ 72 (100)
T cd02860 1 LGAVYTPEKTTFRLWAPTAQSVKLLL-YDKDDQDKVLETVQMKRGENGVWSVTLDGDLEG-------YYYLYEVKVYKGE 72 (100)
T ss_pred CCCEEeCCCEEEEEECCCCcEEEEEE-EcCCCCCCcceeEeeecCCCCEEEEEeCCccCC-------cEEEEEEEEeceE
Confidence 47788888999999999999999985 66664 146899988899999999977554 6999999877677
Q ss_pred eeeecCCcceEeecCCCCCcccc
Q psy9003 849 LLDRLSPWATYVTEPPVVGHAYE 871 (1276)
Q Consensus 849 ~~~~~DPYAkav~~~~~~s~v~~ 871 (1276)
....+||||+++..++.+|++++
T Consensus 73 ~~~~~DPyA~~~~~~~~~s~i~d 95 (100)
T cd02860 73 TNEVVDPYAKALSANGERSVDLD 95 (100)
T ss_pred EEEEcCcccEeEeeCCCceEECC
Confidence 77899999999999998887655
|
Pullulanase (AKA dextrinase; alpha-dextrin endo-1,6-alpha glucosidase) is an enzyme with action similar to that of isoamylase; it cleaves 1,6-alpha-glucosidic linkages in pullulan, amylopectin, and glycogen, and in alpha-and beta-amylase limit-dextrins of amylopectin and glycogen. The N-terminus of pullulanase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase. |
| >PHA03100 ankyrin repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.1e-13 Score=164.20 Aligned_cols=218 Identities=18% Similarity=0.094 Sum_probs=136.8
Q ss_pred cccCCChhHHHHHhhhcccccCCCChhhhhcccccchhcc--ccCCHhHHHhhcccccccccCCChhhHHHHHHHHhHhc
Q psy9003 386 AGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAG--LFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAG 463 (1276)
Q Consensus 386 a~~~~~id~vkyLi~~~h~~~~~~~~~~~~~~vt~lh~a~--~~~~~~~~~yli~~~~~~~~~~~~e~l~~l~~~~~~~~ 463 (1276)
|...|++|++++|+...- ++-..+..+. ||||.|+ ..|+.++|++|+..+. .....
T Consensus 80 a~~~~~~~iv~~Ll~~ga-~i~~~d~~g~----tpL~~A~~~~~~~~~iv~~Ll~~g~-~~~~~---------------- 137 (480)
T PHA03100 80 YNLTDVKEIVKLLLEYGA-NVNAPDNNGI----TPLLYAISKKSNSYSIVEYLLDNGA-NVNIK---------------- 137 (480)
T ss_pred HHhhchHHHHHHHHHCCC-CCCCCCCCCC----chhhHHHhcccChHHHHHHHHHcCC-CCCcc----------------
Confidence 444567777777776433 2234445555 8888888 8888888888776432 11111
Q ss_pred cCCChhhHHHhhhhhcccccCC--ChhhhhhhhhhhhhhccCCCHHHHHHHhhhhcccccCCCHHHHHHHHhhhhhcCCC
Q psy9003 464 LFGTPEQLKYLVDECHKAGLFG--TPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLF 541 (1276)
Q Consensus 464 ~~~~~~~~~~~v~~~~~a~~~~--~~e~~~~lv~~~~~~~~~~~~~~~~~~~t~~~~a~~~g~~e~~~~lv~~~~~~~~~ 541 (1276)
+... .|..|.|...| +.|.+++|++.+.++|.... ...|+.+.|+..|+.+++++|++.+++.+..
T Consensus 138 --~~~g-----~t~L~~A~~~~~~~~~iv~~Ll~~g~din~~d~-----~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~ 205 (480)
T PHA03100 138 --NSDG-----ENLLHLYLESNKIDLKILKLLIDKGVDINAKNR-----YGYTPLHIAVEKGNIDVIKFLLDNGADINAG 205 (480)
T ss_pred --CCCC-----CcHHHHHHHcCCChHHHHHHHHHCCCCcccccC-----CCCCHHHHHHHhCCHHHHHHHHHcCCCccCC
Confidence 1111 35666666666 77777777777776665443 4467777788888888888888877777643
Q ss_pred CCcc-hhhhhhhhhhccccCCC--HHHHHHHHHhhhhccCCCChhhhhhhhhhhcccccCCCHHHHHHHHhhhhhccCCC
Q psy9003 542 GTPE-QLKYLVDECHKAGLFGT--PEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFG 618 (1276)
Q Consensus 542 ~t~~-~l~~~~~~~~~~~~~~~--~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~ 618 (1276)
+... ...+.-|..+.|...|+ ++.+++|.+.++++|..... ..|..+.|...|++|.+++|++.++++|.+-
T Consensus 206 ~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~~g~din~~d~~-----g~TpL~~A~~~~~~~iv~~Ll~~gad~n~~d 280 (480)
T PHA03100 206 DIETLLFTIFETPLHIAACYNEITLEVVNYLLSYGVPINIKDVY-----GFTPLHYAVYNNNPEFVKYLLDLGANPNLVN 280 (480)
T ss_pred CCCCCcHHHHHhHHHHHHHhCcCcHHHHHHHHHcCCCCCCCCCC-----CCCHHHHHHHcCCHHHHHHHHHcCCCCCccC
Confidence 3221 22222455666677777 88888888887777732221 2455555567778888888888887776654
Q ss_pred ChhhhhhhHHHhhhccCCCCHHHHHHHHH
Q psy9003 619 TPEQLKYLVDECHKAGLFGTPEQLKYLVD 647 (1276)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 647 (1276)
... -++.+.|...+..+.+++|++
T Consensus 281 ~~g-----~tpl~~A~~~~~~~iv~~Ll~ 304 (480)
T PHA03100 281 KYG-----DTPLHIAILNNNKEIFKLLLN 304 (480)
T ss_pred CCC-----CcHHHHHHHhCCHHHHHHHHh
Confidence 433 445555555666666666665
|
|
| >TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase | Back alignment and domain information |
|---|
Probab=99.47 E-value=1e-13 Score=168.80 Aligned_cols=103 Identities=26% Similarity=0.301 Sum_probs=89.5
Q ss_pred EEEEEEccCCceEEEEeeccCCCcce------EEEEEccCccccceEEEEEecCCC-----------CCCccccccc---
Q psy9003 75 VRCFEWAPSAQQLYLTGNVSLTPWSI------MEEASLSSIKLIQSIQYILTGVFG-----------TPEQLKYLVD--- 134 (1276)
Q Consensus 75 ~~f~~wAP~A~~v~l~gdfn~~~w~m------~~~~~~~~~~~g~~yky~i~~~~g-----------rp~~as~~~d--- 134 (1276)
|+|++|||+|++|.|+++- ....| +|+++|+++++|..|+|+|.+..- .++..|+|+|
T Consensus 1 v~FrlwAP~A~~V~L~l~~--~~~~m~k~~~GvW~~~v~~~~~G~~Y~y~v~g~~~v~DPya~~~~~~~~~~S~V~d~~~ 78 (542)
T TIGR02402 1 VRFRLWAPTAASVKLRLNG--ALHAMQRLGDGWFEITVPPVGPGDRYGYVLDDGTPVPDPASRRQPDGVHGPSQVVDPDR 78 (542)
T ss_pred CEEEEECCCCCEEEEEeCC--CEEeCeECCCCEEEEEECCCCCCCEEEEEEeeeEEecCccccccccCCCCCeEEecCcc
Confidence 5899999999999999854 33446 999999999999999999975111 3456788877
Q ss_pred -------------------ccccccC---CChHHHHHHHHHHHHhcCc------------------------------CC
Q psy9003 135 -------------------ECHKAGL---FGTPEQLKYLVDECHKAGL------------------------------FG 162 (1276)
Q Consensus 135 -------------------e~h~gs~---~~y~e~a~~li~y~~~~~y------------------------------yg 162 (1276)
|+|+++| =+|+.|++.| ||+|++|+ ||
T Consensus 79 ~~w~~~~~~~~~~~~~viYE~hv~~f~~~G~~~gi~~~l-~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~~~~~~~~~G 157 (542)
T TIGR02402 79 YAWQDTGWRGRPLEEAVIYELHVGTFTPEGTFDAAIEKL-PYLADLGITAIELMPVAQFPGTRGWGYDGVLPYAPHNAYG 157 (542)
T ss_pred cCCCCccccCCCccccEEEEEEhhhcCCCCCHHHHHHhh-HHHHHcCCCEEEeCccccCCCCCCCCCCccCccccccccC
Confidence 9999998 7899999997 99999999 99
Q ss_pred CHHHHHHHHHHHHHcCCC
Q psy9003 163 TPEQLKYLVDECHKAGLF 180 (1276)
Q Consensus 163 tp~~l~~~vd~~h~~~i~ 180 (1276)
|++||+.||++||++||+
T Consensus 158 ~~~e~k~lV~~aH~~Gi~ 175 (542)
T TIGR02402 158 GPDDLKALVDAAHGLGLG 175 (542)
T ss_pred CHHHHHHHHHHHHHCCCE
Confidence 999999999999999998
|
Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system. |
| >PHA02730 ankyrin-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=8.8e-13 Score=162.21 Aligned_cols=370 Identities=9% Similarity=-0.028 Sum_probs=198.3
Q ss_pred hhhhhhcccCCC---CHHHHHhhhhhh--------------cccccCC--ChHHHHHHHhhhhccC--CCCCccccchhh
Q psy9003 246 LVDECHKAGLFG---TPEQLKYLVDEC--------------HKAGLFG--TPEQLKYLVDECHKAG--LFGTPEQLKYLV 304 (1276)
Q Consensus 246 l~~~~~~~~~~g---~~~~~~~li~~~--------------h~~~~~~--~ie~~~yli~e~~~~~--~~~~~~~~t~~~ 304 (1276)
.-+-+|.|+.+| ++|++++|+++. |.|...+ +.|+|++|+..- +++ -..+. .+.
T Consensus 41 G~TaLh~A~~~~~~~~~eivklLLs~GAdin~kD~~G~TPLh~Aa~~~~~~~eIv~~Ll~~~-~~~~~~~~~~----~~d 115 (672)
T PHA02730 41 GNNALHCYVSNKCDTDIKIVRLLLSRGVERLCRNNEGLTPLGVYSKRKYVKSQIVHLLISSY-SNASNELTSN----IND 115 (672)
T ss_pred CCcHHHHHHHcCCcCcHHHHHHHHhCCCCCcccCCCCCChHHHHHHcCCCcHHHHHHHHhcC-CCCCcccccc----cCC
Confidence 344457777665 477777777554 2222223 699999999832 221 11221 233
Q ss_pred hhhccccc--CCCHHHHHHHhhhhhccCCCCcccch--hhhhccccccccCCChhhhHHhhhhhcccc-------CCCCh
Q psy9003 305 DECHKAGL--FGTPEQLKYLVDECHKAGLFGTPEQL--KYLVDECHKAGLFGTPEQLKYLVDECHKAG-------LFGTP 373 (1276)
Q Consensus 305 ~~~~~a~~--~gsi~~l~~Lv~~~~~~~~~~~~~~~--~~~~~~~~~a~~~g~ie~~~yLi~~~h~~~-------~~~~~ 373 (1276)
+..+.+.. ++.+|.||||+..+ .++++.++..- ...+++-..+.-.+++||||+||+-.-+.+ +-.++
T Consensus 116 ~~l~~y~~s~n~~~~~vk~Li~~~-~~~~~~~~~~~~~~~~~~~~yl~~~~~~~eIvklLi~~g~~v~g~~~~~~~~~~~ 194 (672)
T PHA02730 116 FDLYSYMSSDNIDLRLLKYLIVDK-RIRPSKNTNYYIHCLGLVDIYVTTPNPRPEVLLWLLKSECYSTGYVFRSCMYDSD 194 (672)
T ss_pred chHHHHHHhcCCcHHHHHHHHHhc-CCChhhhhhhhccccchhhhhHhcCCCchHHHHHHHHcCCcccccccccccccCC
Confidence 33344444 89999999999632 22222111000 012456667778899999999998754332 11111
Q ss_pred ---hhHH-HHHhhhcccccCCChhHHHHHhhhcccccC-CCChhhhhcccccchh--ccccCCHhHHHhhcc-cccccc-
Q psy9003 374 ---EQLK-YLVDECHKAGLFGTPEQLKYLVDECHKAGL-FGTPEQLKYLVDECHK--AGLFGTPEQLKYLVD-ECHKAG- 444 (1276)
Q Consensus 374 ---e~~~-~~~~~~~~a~~~~~id~vkyLi~~~h~~~~-~~~~~~~~~~vt~lh~--a~~~~~~~~~~yli~-~~~~~~- 444 (1276)
-++- +.++++. ..+++.|++++||.-. +++ ..+..|. ||||. |+..++.|+|++||+ .-+|-.
T Consensus 195 ~c~~~l~~~il~~~~--~~~n~~eiv~lLIs~G--adIN~kd~~G~----TpLh~~~~~~~~~~eiv~~Li~~~~~~~~~ 266 (672)
T PHA02730 195 RCKNSLHYYILSHRE--SESLSKDVIKCLIDNN--VSIHGRDEGGS----LPIQYYWSCSTIDIEIVKLLIKDVDTCSVY 266 (672)
T ss_pred ccchhHHHHHHhhhh--hhccCHHHHHHHHHCC--CCCCCCCCCCC----CHHHHHHHcCcccHHHHHHHHhcccccccc
Confidence 1222 4555543 4689999999999765 343 3566777 99994 667788999999997 222311
Q ss_pred ------------------------cCCChhhHHHHH-------HHHhHhccCCCh-------------------hhHHHh
Q psy9003 445 ------------------------LFGTPEQLKYLV-------DECHKAGLFGTP-------------------EQLKYL 474 (1276)
Q Consensus 445 ------------------------~~~~~e~l~~l~-------~~~~~~~~~~~~-------------------~~~~~~ 474 (1276)
.-.+++-+.+|. +|+..|-..++. .+++.+
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~i~~~~~~~~~~~~q~~ 346 (672)
T PHA02730 267 DDISQPYIRGVLADYLNKRFRVTPYNVDMEIVNLLIEGRHTLIDVMRSITSYDSREYNHYIIDNILKRFRQQDESIVQAM 346 (672)
T ss_pred ccccchhhhhhHHHhhhhhhhcccCCcchHHHHHHhhccCcchhhhhccccccccccchhHHHHHHHhhhccchhHHHHH
Confidence 122223333332 233332201111 112222
Q ss_pred hhhhccccc---CCChhhhhhhhhhhhhhccCCCHHHHHHHhhhhcccccCCC----HHHHHHHHhhhhhcCCCCCcc--
Q psy9003 475 VDECHKAGL---FGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGT----PEQLKYLVDECHKAGLFGTPE-- 545 (1276)
Q Consensus 475 v~~~~~a~~---~~~~e~~~~lv~~~~~~~~~~~~~~~~~~~t~~~~a~~~g~----~e~~~~lv~~~~~~~~~~t~~-- 545 (1276)
. |.=+. .+++|.+++|+..++.+|.+ . ...|+.|.|...++ +|++++|+..+++.+++..+.
T Consensus 347 l---~~Y~~~~~~v~ieIvelLIs~GAdIN~k-~-----~G~TpLH~Aa~~nnn~i~~eIvelLIs~Ga~~dIN~kd~~G 417 (672)
T PHA02730 347 L---INYLHYGDMVSIPILRCMLDNGATMDKT-T-----DNNYPLHDYFVNNNNIVDVNVVRFIVENNGHMAINHVSNNG 417 (672)
T ss_pred H---HHHHhcCCcCcHHHHHHHHHCCCCCCcC-C-----CCCcHHHHHHHHcCCcchHHHHHHHHHcCCCccccccccCC
Confidence 1 11111 24577777777777777743 2 34677776666553 777787777766433332221
Q ss_pred --hhhhhhhhh----hccccC-CCHHHHHHHHHhhhhccCCCChhhhhhhhhhhcccccCCCHHHHHHHHhhhhhccCCC
Q psy9003 546 --QLKYLVDEC----HKAGLF-GTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFG 618 (1276)
Q Consensus 546 --~l~~~~~~~----~~~~~~-~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~ 618 (1276)
.|.+.+-+. ..+..+ ..++.+++|+..++++|...... .|..+-|...+..+.+++|+..|+++|.+-
T Consensus 418 ~T~Lh~~i~a~~~n~~~~~~e~~~~~ivk~LIs~GADINakD~~G-----~TPLh~Aa~~~~~eive~LI~~GAdIN~~d 492 (672)
T PHA02730 418 RLCMYGLILSRFNNCGYHCYETILIDVFDILSKYMDDIDMIDNEN-----KTLLYYAVDVNNIQFARRLLEYGASVNTTS 492 (672)
T ss_pred CchHhHHHHHHhccccccccchhHHHHHHHHHhcccchhccCCCC-----CCHHHHHHHhCCHHHHHHHHHCCCCCCCCC
Confidence 232211110 000001 13456777777777777222222 233333335677777777777777777665
Q ss_pred ChhhhhhhHHHhhhccC--CCCHHHHHHHHH
Q psy9003 619 TPEQLKYLVDECHKAGL--FGTPEQLKYLVD 647 (1276)
Q Consensus 619 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 647 (1276)
.. ...++++.|.. .+..|.++.|+.
T Consensus 493 ~~----~g~TaL~~Aa~~~~~~~eIv~~LLs 519 (672)
T PHA02730 493 RS----IINTAIQKSSYRRENKTKLVDLLLS 519 (672)
T ss_pred Cc----CCcCHHHHHHHhhcCcHHHHHHHHH
Confidence 41 01355555443 256666666654
|
|
| >PHA03100 ankyrin repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.5e-13 Score=162.95 Aligned_cols=284 Identities=18% Similarity=0.082 Sum_probs=200.9
Q ss_pred hHHHHHHHhhhhccCCCCCccccchhhhhhcccccCCCHHHHHHHhhhhhccCCCCcccchhhhhccccc-----cccCC
Q psy9003 278 PEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHK-----AGLFG 352 (1276)
Q Consensus 278 ie~~~yli~e~~~~~~~~~~~~~t~~~~~~~~a~~~gsi~~l~~Lv~~~~~~~~~~~~~~~~~~~~~~~~-----a~~~g 352 (1276)
.++++||+.+. +. .........|..|.|+..|+.+++++|++..-..+ ..+. ...+..+. |...|
T Consensus 15 ~~~~~~~~~~~--~~---~~~~~~~~~t~L~~A~~~~~~~ivk~Ll~~g~~~~--~~~~---~~~t~L~~~~~~~a~~~~ 84 (480)
T PHA03100 15 VKNIKYIIMED--DL---NDYSYKKPVLPLYLAKEARNIDVVKILLDNGADIN--SSTK---NNSTPLHYLSNIKYNLTD 84 (480)
T ss_pred HHHHHHHHhcC--cc---chhhhcccchhhhhhhccCCHHHHHHHHHcCCCCC--Cccc---cCcCHHHHHHHHHHHhhc
Confidence 46777777643 21 11233456677888999999999999998764433 2211 11244556 88889
Q ss_pred ChhhhHHhhhhhccccC-CCChhhHHHHHhhhcccc--cCCChhHHHHHhhhcccccCCCChhhhhcccccchhccccC-
Q psy9003 353 TPEQLKYLVDECHKAGL-FGTPEQLKYLVDECHKAG--LFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFG- 428 (1276)
Q Consensus 353 ~ie~~~yLi~~~h~~~~-~~~~e~~~~~~~~~~~a~--~~~~id~vkyLi~~~h~~~~~~~~~~~~~~vt~lh~a~~~~- 428 (1276)
++|++++|++....++. ..... |-.+.|+ ..|+.|+|++|+.. .+++...+..+. |+||.|+..+
T Consensus 85 ~~~iv~~Ll~~ga~i~~~d~~g~------tpL~~A~~~~~~~~~iv~~Ll~~-g~~~~~~~~~g~----t~L~~A~~~~~ 153 (480)
T PHA03100 85 VKEIVKLLLEYGANVNAPDNNGI------TPLLYAISKKSNSYSIVEYLLDN-GANVNIKNSDGE----NLLHLYLESNK 153 (480)
T ss_pred hHHHHHHHHHCCCCCCCCCCCCC------chhhHHHhcccChHHHHHHHHHc-CCCCCccCCCCC----cHHHHHHHcCC
Confidence 99999999987655542 11122 2222333 46899999999974 355666677788 9999999999
Q ss_pred -CHhHHHhhcccccccccCCChhhHHHHHHHHhHhccCCChhhHHHhhhhhcccccCCChhhhhhhhhhhhhhccCCC-H
Q psy9003 429 -TPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGT-P 506 (1276)
Q Consensus 429 -~~~~~~yli~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~~~~~~~v~~~~~a~~~~~~e~~~~lv~~~~~~~~~~~-~ 506 (1276)
+.+++++|+..+....... ... .|..|.|...|..|.+++|++.+++.+.... .
T Consensus 154 ~~~~iv~~Ll~~g~din~~d-------------------~~g-----~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~ 209 (480)
T PHA03100 154 IDLKILKLLIDKGVDINAKN-------------------RYG-----YTPLHIAVEKGNIDVIKFLLDNGADINAGDIET 209 (480)
T ss_pred ChHHHHHHHHHCCCCccccc-------------------CCC-----CCHHHHHHHhCCHHHHHHHHHcCCCccCCCCCC
Confidence 8999999987643211111 111 5778888888999999999998888876542 1
Q ss_pred HHHHHHhhhhcccccCCC--HHHHHHHHhhhhhcCCCCCcchhhhhhhhhhccccCCCHHHHHHHHHhhhhccCCCChhh
Q psy9003 507 EQLKYLVDECHKAGLFGT--PEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQ 584 (1276)
Q Consensus 507 ~~~~~~~t~~~~a~~~g~--~e~~~~lv~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~ 584 (1276)
.......|..+.|...|+ ++++++|++.++++|..+. +.-|..+.|...|+.|.+++|++.++++|.....-
T Consensus 210 ~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~~g~din~~d~-----~g~TpL~~A~~~~~~~iv~~Ll~~gad~n~~d~~g- 283 (480)
T PHA03100 210 LLFTIFETPLHIAACYNEITLEVVNYLLSYGVPINIKDV-----YGFTPLHYAVYNNNPEFVKYLLDLGANPNLVNKYG- 283 (480)
T ss_pred CcHHHHHhHHHHHHHhCcCcHHHHHHHHHcCCCCCCCCC-----CCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCC-
Confidence 122223788889999999 9999999999988886554 45566677779999999999999999888433222
Q ss_pred hhhhhhhhcccccCCCHHHHHHHHhhhhhccC
Q psy9003 585 LKYLVDECHKAGLFGTPEQLKYLVDECHKAGL 616 (1276)
Q Consensus 585 ~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~ 616 (1276)
-|..+.|...++.+.+++|++.+++++.
T Consensus 284 ----~tpl~~A~~~~~~~iv~~Ll~~g~~i~~ 311 (480)
T PHA03100 284 ----DTPLHIAILNNNKEIFKLLLNNGPSIKT 311 (480)
T ss_pred ----CcHHHHHHHhCCHHHHHHHHhcCCCHHH
Confidence 3555566688999999999999887753
|
|
| >PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.4e-12 Score=171.82 Aligned_cols=92 Identities=16% Similarity=0.193 Sum_probs=76.6
Q ss_pred CceEEEEecCCccccCccCcHHHHHHhhhhHHHHcCCCCCccceeecccccccccccccceeeccCccccccccccccCC
Q psy9003 895 NLKIYESHVGICTQEQKCASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAESH 974 (1276)
Q Consensus 895 d~vIYElHVr~ft~~~~~Gtf~gl~ek~LdyLK~LGVna~d~wV~LmP~f~~eew~~~~pi~~l~~~Pi~E~~i~~~~S~ 974 (1276)
+..+|-+..+. .++|.+++++ ||||++||||+ |||+|+|+ . .
T Consensus 743 P~atyrlq~~~------~~tf~~~~~~-l~Yl~~LGv~~----i~lsPi~~--------------------a-------~ 784 (1693)
T PRK14507 743 PRATYRLQFHK------DFTFADAEAI-LPYLAALGISH----VYASPILK--------------------A-------R 784 (1693)
T ss_pred cceeEEEEeCC------CCCHHHHHHH-hHHHHHcCCCE----EEECCCcC--------------------C-------C
Confidence 45688888764 3789999985 99999999999 99995443 1 1
Q ss_pred CcccCCCccccccccccccccccCCCCCCcccccccccccCCCCCccccccccccCCCCCCHHHHHHHHHHHHHcCCEEE
Q psy9003 975 DQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLYVL 1054 (1276)
Q Consensus 975 ~~~~WGYdp~nyf~~d~~~y~~~S~~~Dp~~~~dap~~~yas~s~hkYt~D~~~ID~~~Gt~eEfK~LV~alHk~GI~VI 1054 (1276)
+..+|||++.||+ + |||.+|+.++|++||++||++||+||
T Consensus 785 ~gs~hGYdv~D~~---------------------~-------------------idp~lG~~edf~~Lv~~ah~~Gi~vi 824 (1693)
T PRK14507 785 PGSTHGYDIVDHS---------------------Q-------------------INPEIGGEEGFERFCAALKAHGLGQL 824 (1693)
T ss_pred CCCCCCCCCCCCC---------------------c-------------------cCcccCCHHHHHHHHHHHHHCCCEEE
Confidence 1235899988888 3 44999999999999999999999999
Q ss_pred EEEeccccCC
Q psy9003 1055 LDVVHSHASK 1064 (1276)
Q Consensus 1055 LDvV~NHt~~ 1064 (1276)
||+|+||++.
T Consensus 825 lDiV~NH~~~ 834 (1693)
T PRK14507 825 LDIVPNHMGV 834 (1693)
T ss_pred EEecccccCC
Confidence 9999999984
|
|
| >PF02922 CBM_48: Carbohydrate-binding module 48 (Isoamylase N-terminal domain); InterPro: IPR004193 O-Glycosyl hydrolases 3 | Back alignment and domain information |
|---|
Probab=99.41 E-value=4.7e-13 Score=123.95 Aligned_cols=80 Identities=25% Similarity=0.324 Sum_probs=67.6
Q ss_pred cccCeeecC--ceEEEEEccCCcEEEEEccCCC-Cccccccce-ecCCCeEEEEcCCCCCCCcccCcc-cEEEEEEEEeC
Q psy9003 772 PEQLKYLVD--ECHKAGLLCFMHVVCAAGDFNN-WNREEFAYK-KLDFGKWELVLPPNPDGSCKLTHL-SQVKLVVRNQH 846 (1276)
Q Consensus 772 p~G~~y~~D--~a~FalwAP~A~~VsLvGDFN~-wd~~~~pM~-r~~~GVWsl~Ip~~~~G~~~i~hG-s~YkYrV~~~d 846 (1276)
|+|+++..+ +++|++|||+|++|+|++++++ |....++|. +.+.|+|++++++. +++| .+|+|+|...+
T Consensus 1 plG~~~~~~~~~~~F~vwaP~A~~V~l~~~~~~~~~~~~~~m~~~~~~G~w~~~~~~~------~~~g~~~Y~y~i~~~~ 74 (85)
T PF02922_consen 1 PLGAHYTEDGGGVTFRVWAPNAKSVELVLYFNGSWPAEEYPMTRKDDDGVWEVTVPGD------LPPGGYYYKYRIDGDD 74 (85)
T ss_dssp SSEEEEESSCTEEEEEEE-TTESEEEEEEETTTSSEEEEEEEEEECTTTEEEEEEEGC------GTTTT-EEEEEEEETT
T ss_pred CcCcEEECCCCEEEEEEECCCCCEEEEEEEeeecCCCceEEeeecCCCCEEEEEEcCC------cCCCCEEEEEEEEeCC
Confidence 789999987 9999999999999999999998 888899999 58899999999953 2344 59999999888
Q ss_pred CeeeeecCCcc
Q psy9003 847 GHLLDRLSPWA 857 (1276)
Q Consensus 847 G~~~~~~DPYA 857 (1276)
|.....+||||
T Consensus 75 g~~~~~~DPYA 85 (85)
T PF02922_consen 75 GETPEVVDPYA 85 (85)
T ss_dssp TEEEEET-TT-
T ss_pred CcEEEEeCCCC
Confidence 88889999997
|
2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. This domain is found in a range of enzymes that act on branched substrates ie. isoamylase, pullulanase and branching enzyme. Isoamylase hydrolyses 1,6-alpha-D-glucosidic branch linkages in glycogen, amylopectin and dextrin; 1,4-alpha-glucan branching enzyme functions in the formation of 1,6-glucosidic linkages of glycogen; and pullulanase is a starch-debranching enzyme.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BHZ_A 2BY2_A 2BY3_A 2BXY_A 2BY1_A 2BHY_A 2BHU_A 2BXZ_A 2BY0_A 2FHB_A .... |
| >PHA02875 ankyrin repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.8e-13 Score=158.26 Aligned_cols=226 Identities=17% Similarity=0.087 Sum_probs=149.9
Q ss_pred hhhcccccCCCHHHHHHHhhhhhccCCCCcccchhhhhccccccccCCChhhhHHhhhhhccccCCCChhhHHHHHhhhc
Q psy9003 305 DECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECH 384 (1276)
Q Consensus 305 ~~~~~a~~~gsi~~l~~Lv~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~ie~~~yLi~~~h~~~~~~~~e~~~~~~~~~~ 384 (1276)
+.++.|+..|+++++++|++..-..+ ..+ ....|+.|.|+..|+.|++++|++-....+... .+ ..+..+
T Consensus 4 ~~L~~A~~~g~~~iv~~Ll~~g~~~n--~~~---~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~-~~----~~t~L~ 73 (413)
T PHA02875 4 VALCDAILFGELDIARRLLDIGINPN--FEI---YDGISPIKLAMKFRDSEAIKLLMKHGAIPDVKY-PD----IESELH 73 (413)
T ss_pred hHHHHHHHhCCHHHHHHHHHCCCCCC--ccC---CCCCCHHHHHHHcCCHHHHHHHHhCCCCccccC-CC----cccHHH
Confidence 44566666777777777776533222 111 122455666777777777777776543222211 11 112334
Q ss_pred ccccCCChhHHHHHhhhcccccCCCChhhhhcccccchhccccCCHhHHHhhcccccccccCCChhhHHHHHHHHhHhcc
Q psy9003 385 KAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGL 464 (1276)
Q Consensus 385 ~a~~~~~id~vkyLi~~~h~~~~~~~~~~~~~~vt~lh~a~~~~~~~~~~yli~~~~~~~~~~~~e~l~~l~~~~~~~~~ 464 (1276)
.|+..|++++|++|+.....++...+..+. ||||.|+..|+.++|++|+..+.. +...
T Consensus 74 ~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~----tpL~~A~~~~~~~iv~~Ll~~gad-~~~~----------------- 131 (413)
T PHA02875 74 DAVEEGDVKAVEELLDLGKFADDVFYKDGM----TPLHLATILKKLDIMKLLIARGAD-PDIP----------------- 131 (413)
T ss_pred HHHHCCCHHHHHHHHHcCCcccccccCCCC----CHHHHHHHhCCHHHHHHHHhCCCC-CCCC-----------------
Confidence 445567888888888765544444445566 899999988999999888876422 1111
Q ss_pred CCChhhHHHhhhhhcccccCCChhhhhhhhhhhhhhccCCCHHHHHHHhhhhcccccCCCHHHHHHHHhhhhhcCCCCCc
Q psy9003 465 FGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTP 544 (1276)
Q Consensus 465 ~~~~~~~~~~v~~~~~a~~~~~~e~~~~lv~~~~~~~~~~~~~~~~~~~t~~~~a~~~g~~e~~~~lv~~~~~~~~~~t~ 544 (1276)
+... .|..|.|...|..|.+++|++.....+.... ...|+.+.|+..|++|++++|++.++++|..+..
T Consensus 132 -~~~g-----~tpLh~A~~~~~~~~v~~Ll~~g~~~~~~d~-----~g~TpL~~A~~~g~~eiv~~Ll~~ga~~n~~~~~ 200 (413)
T PHA02875 132 -NTDK-----FSPLHLAVMMGDIKGIELLIDHKACLDIEDC-----CGCTPLIIAMAKGDIAICKMLLDSGANIDYFGKN 200 (413)
T ss_pred -CCCC-----CCHHHHHHHcCCHHHHHHHHhcCCCCCCCCC-----CCCCHHHHHHHcCCHHHHHHHHhCCCCCCcCCCC
Confidence 1222 4677888888888888888888777776554 4578889999999999999999999988854432
Q ss_pred chhhhhhhhhhccccCCCHHHHHHHHHhhhhcc
Q psy9003 545 EQLKYLVDECHKAGLFGTPEQLKYLVDECHKAG 577 (1276)
Q Consensus 545 ~~l~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~ 577 (1276)
+ ..+-.+.|...|+.|.+++|++.++++|
T Consensus 201 ~----~~t~l~~A~~~~~~~iv~~Ll~~gad~n 229 (413)
T PHA02875 201 G----CVAALCYAIENNKIDIVRLFIKRGADCN 229 (413)
T ss_pred C----CchHHHHHHHcCCHHHHHHHHHCCcCcc
Confidence 1 1234455668899999999999999998
|
|
| >PHA02874 ankyrin repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.7e-12 Score=153.34 Aligned_cols=269 Identities=13% Similarity=0.023 Sum_probs=161.1
Q ss_pred ccccCCChhhhHHhhhhhccccCCCChhhHHHHHhhhcccccCCChhHHHHHhhhcccccCCCChhhhhcccccchhccc
Q psy9003 347 KAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGL 426 (1276)
Q Consensus 347 ~a~~~g~ie~~~yLi~~~h~~~~~~~~e~~~~~~~~~~~a~~~~~id~vkyLi~~~h~~~~~~~~~~~~~~vt~lh~a~~ 426 (1276)
.|+..|++|+|++|+...- ..++...+ ...|-.+.|+..|+.|+|++|++.. +++...+..+. ||||.|+.
T Consensus 7 ~ai~~gd~~~v~~ll~~~~-~~~n~~~~---~~~tpL~~A~~~g~~~iv~~Ll~~G-a~~n~~~~~~~----t~L~~A~~ 77 (434)
T PHA02874 7 MCIYSGDIEAIEKIIKNKG-NCINISVD---ETTTPLIDAIRSGDAKIVELFIKHG-ADINHINTKIP----HPLLTAIK 77 (434)
T ss_pred HHHhcCCHHHHHHHHHcCC-CCCCCcCC---CCCCHHHHHHHcCCHHHHHHHHHCC-CCCCCCCCCCC----CHHHHHHH
Confidence 4667777777777775432 11221111 1235556666677777777777532 33333444455 77777777
Q ss_pred cCCHhHHHhhcccccccccCCChhhHHHHHHHHhHhccCCChhhHHHhhhhhcccccCCChhhhhhhhhhhhhhccCCCH
Q psy9003 427 FGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTP 506 (1276)
Q Consensus 427 ~~~~~~~~yli~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~~~~~~~v~~~~~a~~~~~~e~~~~lv~~~~~~~~~~~~ 506 (1276)
.|+.++|++|+..+--. + ..+....+.|.+++|++.+.+++....
T Consensus 78 ~~~~~iv~~Ll~~g~~~----~------------------------------~~~~~~~~~~~i~~ll~~g~d~n~~~~- 122 (434)
T PHA02874 78 IGAHDIIKLLIDNGVDT----S------------------------------ILPIPCIEKDMIKTILDCGIDVNIKDA- 122 (434)
T ss_pred cCCHHHHHHHHHCCCCC----C------------------------------cchhccCCHHHHHHHHHCcCCCCCCCC-
Confidence 77777777777543210 0 001112234566666666666654432
Q ss_pred HHHHHHhhhhcccccCCCHHHHHHHHhhhhhcCCCCCcchhhhhhhhhhccccCCCHHHHHHHHHhhhhccCCCChhhhh
Q psy9003 507 EQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLK 586 (1276)
Q Consensus 507 ~~~~~~~t~~~~a~~~g~~e~~~~lv~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~~ 586 (1276)
...|+.+.|+..|++|++++|+..++++|..+. ...|..|.|...|+.|.+++|++.++.+|......
T Consensus 123 ----~g~T~Lh~A~~~~~~~~v~~Ll~~gad~n~~d~-----~g~tpLh~A~~~~~~~iv~~Ll~~g~~~n~~~~~g--- 190 (434)
T PHA02874 123 ----ELKTFLHYAIKKGDLESIKMLFEYGADVNIEDD-----NGCYPIHIAIKHNFFDIIKLLLEKGAYANVKDNNG--- 190 (434)
T ss_pred ----CCccHHHHHHHCCCHHHHHHHHhCCCCCCCcCC-----CCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCC---
Confidence 235778888888888888888888777765443 34455566667888888888888888777332221
Q ss_pred hhhhhhcccccCCCHHHHHHHHhhhhhccCCCChhhhhhhHHHhhhccCCCCHHHHHHHHHHHHhhcCCCChHHHhhhhh
Q psy9003 587 YLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVD 666 (1276)
Q Consensus 587 ~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 666 (1276)
-|..+.|...|+.+.+++|++.+++++.+-..- -++.+.|..++. +.++.|.. .++-+... ..--+
T Consensus 191 --~tpL~~A~~~g~~~iv~~Ll~~g~~i~~~~~~g-----~TpL~~A~~~~~-~~i~~Ll~---~~~in~~d---~~G~T 256 (434)
T PHA02874 191 --ESPLHNAAEYGDYACIKLLIDHGNHIMNKCKNG-----FTPLHNAIIHNR-SAIELLIN---NASINDQD---IDGST 256 (434)
T ss_pred --CCHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCC-----CCHHHHHHHCCh-HHHHHHHc---CCCCCCcC---CCCCC
Confidence 344555557888888888888888776654433 455555555543 45555542 11111110 11234
Q ss_pred hhhhcccCC-ChhHHHHHHH
Q psy9003 667 ECHKAGLFG-TPEQLKYLVD 685 (1276)
Q Consensus 667 ~~~~~~~~~-~~~~~~~~~~ 685 (1276)
++|.|..++ +.+.+++|+.
T Consensus 257 pLh~A~~~~~~~~iv~~Ll~ 276 (434)
T PHA02874 257 PLHHAINPPCDIDIIDILLY 276 (434)
T ss_pred HHHHHHhcCCcHHHHHHHHH
Confidence 788888765 7788888876
|
|
| >PHA02730 ankyrin-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=8.9e-12 Score=153.49 Aligned_cols=374 Identities=11% Similarity=-0.016 Sum_probs=208.3
Q ss_pred hHHHHHHHhhhhccCCCCCccccchhhhhhcccccCC---CHHHHHHHhhhhhccCCCCcccchhhhhccccccccCC--
Q psy9003 278 PEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFG---TPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFG-- 352 (1276)
Q Consensus 278 ie~~~yli~e~~~~~~~~~~~~~t~~~~~~~~a~~~g---si~~l~~Lv~~~~~~~~~~~~~~~~~~~~~~~~a~~~g-- 352 (1276)
-.-+|..|.-|+-.-...+..|.|-| |-|+..| +.|++++|+++.-.++.. |. ..-|+.|.|..+|
T Consensus 20 ~~~~~~~~~~~~~in~~kd~~G~TaL----h~A~~~~~~~~~eivklLLs~GAdin~k--D~---~G~TPLh~Aa~~~~~ 90 (672)
T PHA02730 20 YKKIKLEIETCHNLSKHIDRRGNNAL----HCYVSNKCDTDIKIVRLLLSRGVERLCR--NN---EGLTPLGVYSKRKYV 90 (672)
T ss_pred HHHHHHHHHHhcchhhhcCCCCCcHH----HHHHHcCCcCcHHHHHHHHhCCCCCccc--CC---CCCChHHHHHHcCCC
Confidence 34455555533111111233444444 5555565 589999998765544422 21 2245666666656
Q ss_pred ChhhhHHhhhhhccccC-----CCChhhHHHHHhhhcccccCCChhHHHHHhhhcccccCCCCh-----hhhhcccccch
Q psy9003 353 TPEQLKYLVDECHKAGL-----FGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTP-----EQLKYLVDECH 422 (1276)
Q Consensus 353 ~ie~~~yLi~~~h~~~~-----~~~~e~~~~~~~~~~~a~~~~~id~vkyLi~~~h~~~~~~~~-----~~~~~~vt~lh 422 (1276)
+.|+|++|+.-.-.... -+...+-+|..+. .+++|+|||||.-.-++|..+.+ .+. ++++
T Consensus 91 ~~eIv~~Ll~~~~~~~~~~~~~~~d~~l~~y~~s~------n~~~~~vk~Li~~~~~~~~~~~~~~~~~~~~----~~~y 160 (672)
T PHA02730 91 KSQIVHLLISSYSNASNELTSNINDFDLYSYMSSD------NIDLRLLKYLIVDKRIRPSKNTNYYIHCLGL----VDIY 160 (672)
T ss_pred cHHHHHHHHhcCCCCCcccccccCCchHHHHHHhc------CCcHHHHHHHHHhcCCChhhhhhhhccccch----hhhh
Confidence 78999999876432211 1334455554421 37888888888755556654432 344 8888
Q ss_pred hccccCCHhHHHhhcccccccc-c--CCC-h--hhH-HHHH-HH-HhHhccCCChhhHHHhh--------------hhhc
Q psy9003 423 KAGLFGTPEQLKYLVDECHKAG-L--FGT-P--EQL-KYLV-DE-CHKAGLFGTPEQLKYLV--------------DECH 479 (1276)
Q Consensus 423 ~a~~~~~~~~~~yli~~~~~~~-~--~~~-~--e~l-~~l~-~~-~~~~~~~~~~~~~~~~v--------------~~~~ 479 (1276)
.|+..+++|+||.||..+-+-- - .+. . ..- .+|. .+ ++...-+++.|++|.|+ |..|
T Consensus 161 l~~~~~~~eIvklLi~~g~~v~g~~~~~~~~~~~~c~~~l~~~il~~~~~~~n~~eiv~lLIs~GadIN~kd~~G~TpLh 240 (672)
T PHA02730 161 VTTPNPRPEVLLWLLKSECYSTGYVFRSCMYDSDRCKNSLHYYILSHRESESLSKDVIKCLIDNNVSIHGRDEGGSLPIQ 240 (672)
T ss_pred HhcCCCchHHHHHHHHcCCcccccccccccccCCccchhHHHHHHhhhhhhccCHHHHHHHHHCCCCCCCCCCCCCCHHH
Confidence 8888888888888887643320 0 011 0 000 1111 11 22224666777777774 6676
Q ss_pred c--cccCCChhhhhhhhh------------------hhhhhcc--------CCCHHHHHHHh-------------hhhc-
Q psy9003 480 K--AGLFGTPEQLKYLVD------------------ECHKAGL--------FGTPEQLKYLV-------------DECH- 517 (1276)
Q Consensus 480 ~--a~~~~~~e~~~~lv~------------------~~~~~~~--------~~~~~~~~~~~-------------t~~~- 517 (1276)
+ +...|..|-+++|+. ++++-.. .+..+.|+.++ |+.-
T Consensus 241 ~~~~~~~~~~eiv~~Li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~ 320 (672)
T PHA02730 241 YYWSCSTIDIEIVKLLIKDVDTCSVYDDISQPYIRGVLADYLNKRFRVTPYNVDMEIVNLLIEGRHTLIDVMRSITSYDS 320 (672)
T ss_pred HHHHcCcccHHHHHHHHhccccccccccccchhhhhhHHHhhhhhhhcccCCcchHHHHHHhhccCcchhhhhccccccc
Confidence 4 555666788888877 1111110 11223322220 0011
Q ss_pred ------------ccc-------------------cCCCHHHHHHHHhhhhhcCCCCCcchhhhhhhhhhccccCCC----
Q psy9003 518 ------------KAG-------------------LFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGT---- 562 (1276)
Q Consensus 518 ------------~a~-------------------~~g~~e~~~~lv~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~---- 562 (1276)
|++ ...++|++++|+..++++|.. . +.-|..|.|...++
T Consensus 321 ~~~n~~~~~~i~~~~~~~~~~~~q~~l~~Y~~~~~~v~ieIvelLIs~GAdIN~k-~-----~G~TpLH~Aa~~nnn~i~ 394 (672)
T PHA02730 321 REYNHYIIDNILKRFRQQDESIVQAMLINYLHYGDMVSIPILRCMLDNGATMDKT-T-----DNNYPLHDYFVNNNNIVD 394 (672)
T ss_pred cccchhHHHHHHHhhhccchhHHHHHHHHHHhcCCcCcHHHHHHHHHCCCCCCcC-C-----CCCcHHHHHHHHcCCcch
Confidence 111 136789999999999888853 2 44566666655553
Q ss_pred HHHHHHHHHhhhh--cc--CCCChhhhhhh-hhhhcc---cccC-CCHHHHHHHHhhhhhccCCCChhhhhhhHHHhhhc
Q psy9003 563 PEQLKYLVDECHK--AG--LFGTPEQLKYL-VDECHK---AGLF-GTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKA 633 (1276)
Q Consensus 563 ~e~~~~l~~~~~~--~~--~~~~~~~~~~~-~~~~~~---~~~~-~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 633 (1276)
+|.+++|+..+++ +| .+.....|++. ...... +... ..++.+++|+..++++|.|-+.. .++++-|
T Consensus 395 ~eIvelLIs~Ga~~dIN~kd~~G~T~Lh~~i~a~~~n~~~~~~e~~~~~ivk~LIs~GADINakD~~G-----~TPLh~A 469 (672)
T PHA02730 395 VNVVRFIVENNGHMAINHVSNNGRLCMYGLILSRFNNCGYHCYETILIDVFDILSKYMDDIDMIDNEN-----KTLLYYA 469 (672)
T ss_pred HHHHHHHHHcCCCccccccccCCCchHhHHHHHHhccccccccchhHHHHHHHHHhcccchhccCCCC-----CCHHHHH
Confidence 8999999988874 54 12222222221 100000 0000 13466899999999988876665 6677777
Q ss_pred cCCCCHHHHHHHHHHHHhhcCCCChHHHhhhhhhhhhccc--CCChhHHHHHHH
Q psy9003 634 GLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGL--FGTPEQLKYLVD 685 (1276)
Q Consensus 634 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 685 (1276)
...+..+.+++|+..-+..+-.-- ...-+++|.|.. .|+.++++.|+.
T Consensus 470 a~~~~~eive~LI~~GAdIN~~d~----~~g~TaL~~Aa~~~~~~~eIv~~LLs 519 (672)
T PHA02730 470 VDVNNIQFARRLLEYGASVNTTSR----SIINTAIQKSSYRRENKTKLVDLLLS 519 (672)
T ss_pred HHhCCHHHHHHHHHCCCCCCCCCC----cCCcCHHHHHHHhhcCcHHHHHHHHH
Confidence 777888888888764333221000 012457777765 467888888875
|
|
| >PHA02716 CPXV016; CPX019; EVM010; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.8e-11 Score=151.39 Aligned_cols=64 Identities=11% Similarity=-0.011 Sum_probs=44.6
Q ss_pred hhhhhhhccccCCC-----HHHHHHHHHhhhhccCCCChhhhhhhhhhhcccccCCCH-----HHHHHHHhhhhhccCC
Q psy9003 549 YLVDECHKAGLFGT-----PEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTP-----EQLKYLVDECHKAGLF 617 (1276)
Q Consensus 549 ~~~~~~~~~~~~~~-----~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----e~~~~l~~~~~~~~~~ 617 (1276)
+.-|..|.|...|+ +|.+++|+..++++|.....- .|..+-|...|.. |.+++|++.++.++..
T Consensus 496 ~G~TPLh~Aa~~g~~~~v~~e~~k~LL~~GADIN~~d~~G-----~TPLh~A~~~g~~~~~~~eIvk~LL~~ga~~~~~ 569 (764)
T PHA02716 496 SGMTPLHVSIISHTNANIVMDSFVYLLSIQYNINIPTKNG-----VTPLMLTMRNNRLSGHQWYIVKNILDKRPNVDIV 569 (764)
T ss_pred CCCCHHHHHHHcCCccchhHHHHHHHHhCCCCCcccCCCC-----CCHHHHHHHcCCccccHHHHHHHHHhcCCCcchH
Confidence 34444455545554 466799999999999543333 5667777788865 9999999988887554
|
|
| >PHA02875 ankyrin repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.3e-12 Score=150.61 Aligned_cols=225 Identities=17% Similarity=0.095 Sum_probs=162.4
Q ss_pred ccccccCCChhhhHHhhhhhccccC-CCChhhHHHHHhhhcccccCCChhHHHHHhhhcccccCCCChhhhhcccccchh
Q psy9003 345 CHKAGLFGTPEQLKYLVDECHKAGL-FGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHK 423 (1276)
Q Consensus 345 ~~~a~~~g~ie~~~yLi~~~h~~~~-~~~~e~~~~~~~~~~~a~~~~~id~vkyLi~~~h~~~~~~~~~~~~~~vt~lh~ 423 (1276)
.+.|+..|++|+|++|++..-..+. ..... |-.+.|+..|+.|+|++|+... .++...+.++. ||||.
T Consensus 6 L~~A~~~g~~~iv~~Ll~~g~~~n~~~~~g~------tpL~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~~~----t~L~~ 74 (413)
T PHA02875 6 LCDAILFGELDIARRLLDIGINPNFEIYDGI------SPIKLAMKFRDSEAIKLLMKHG-AIPDVKYPDIE----SELHD 74 (413)
T ss_pred HHHHHHhCCHHHHHHHHHCCCCCCccCCCCC------CHHHHHHHcCCHHHHHHHHhCC-CCccccCCCcc----cHHHH
Confidence 3567778999999999985433332 11222 2233444568999999999754 35555555666 99999
Q ss_pred ccccCCHhHHHhhcccccccccCCChhhHHHHHHHHhHhccCCChhhHHHhhhhhcccccCCChhhhhhhhhhhhhhccC
Q psy9003 424 AGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLF 503 (1276)
Q Consensus 424 a~~~~~~~~~~yli~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~~~~~~~v~~~~~a~~~~~~e~~~~lv~~~~~~~~~ 503 (1276)
|+..|+.++|++|+..+....-..+ .+. .|..|.|...|+.|.+++|++.+++.+..
T Consensus 75 A~~~g~~~~v~~Ll~~~~~~~~~~~------------------~~g-----~tpL~~A~~~~~~~iv~~Ll~~gad~~~~ 131 (413)
T PHA02875 75 AVEEGDVKAVEELLDLGKFADDVFY------------------KDG-----MTPLHLATILKKLDIMKLLIARGADPDIP 131 (413)
T ss_pred HHHCCCHHHHHHHHHcCCccccccc------------------CCC-----CCHHHHHHHhCCHHHHHHHHhCCCCCCCC
Confidence 9999999999999976543211111 111 36778888899999999999998888866
Q ss_pred CCHHHHHHHhhhhcccccCCCHHHHHHHHhhhhhcCCCCCcchhhhhhhhhhccccCCCHHHHHHHHHhhhhccCCCChh
Q psy9003 504 GTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPE 583 (1276)
Q Consensus 504 ~~~~~~~~~~t~~~~a~~~g~~e~~~~lv~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~~ 583 (1276)
.. ...|+.|.|+..|+++.+++|++.+++.+..+. +.-|-.+.|...|++|.+++|++.++++|......
T Consensus 132 ~~-----~g~tpLh~A~~~~~~~~v~~Ll~~g~~~~~~d~-----~g~TpL~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~ 201 (413)
T PHA02875 132 NT-----DKFSPLHLAVMMGDIKGIELLIDHKACLDIEDC-----CGCTPLIIAMAKGDIAICKMLLDSGANIDYFGKNG 201 (413)
T ss_pred CC-----CCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCCC-----CCCCHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCC
Confidence 54 347889999999999999999998888775554 44566667778999999999999999998322211
Q ss_pred hhhhhhhhhcccccCCCHHHHHHHHhhhhhccCC
Q psy9003 584 QLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLF 617 (1276)
Q Consensus 584 ~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~ 617 (1276)
.-+..+-|...|..|.+++|++.++++|..
T Consensus 202 ----~~t~l~~A~~~~~~~iv~~Ll~~gad~n~~ 231 (413)
T PHA02875 202 ----CVAALCYAIENNKIDIVRLFIKRGADCNIM 231 (413)
T ss_pred ----CchHHHHHHHcCCHHHHHHHHHCCcCcchH
Confidence 012333355889999999999999999865
|
|
| >PHA02878 ankyrin repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=3.2e-12 Score=152.83 Aligned_cols=278 Identities=13% Similarity=0.022 Sum_probs=181.0
Q ss_pred cccccCCChHHHHHHHhhhhccCCCCCccccchhhhhhcccccCCCHHHHHHHhhhhhccCCCCcccchhhhhccccccc
Q psy9003 270 HKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAG 349 (1276)
Q Consensus 270 h~~~~~~~ie~~~yli~e~~~~~~~~~~~~~t~~~~~~~~a~~~gsi~~l~~Lv~~~~~~~~~~~~~~~~~~~~~~~~a~ 349 (1276)
|.|...+++|+|++|++. ..++-..+..| .|++|.|+..|+.+.+++|+.......+. +..+..+.|+
T Consensus 42 h~A~~~g~~e~vk~Ll~~-gadvn~~d~~g----~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~-------~~~~~l~~a~ 109 (477)
T PHA02878 42 HQAVEARNLDVVKSLLTR-GHNVNQPDHRD----LTPLHIICKEPNKLGMKEMIRSINKCSVF-------YTLVAIKDAF 109 (477)
T ss_pred HHHHHcCCHHHHHHHHHC-CCCCCCCCCCC----CCHHHHHHHCccHhHHHHHHHHHhccccc-------cchhhHHHHH
Confidence 344444556666666653 23443344344 45557788899999999999875433332 2345567788
Q ss_pred cCCChhhhHHhhhhhccccCCCChhhHHHHHhhhcccccCC--ChhHHHHHhhhcccccCCCChhhhhcccccchhcccc
Q psy9003 350 LFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFG--TPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLF 427 (1276)
Q Consensus 350 ~~g~ie~~~yLi~~~h~~~~~~~~e~~~~~~~~~~~a~~~~--~id~vkyLi~~~h~~~~~~~~~~~~~~vt~lh~a~~~ 427 (1276)
..|++|++++|+...... ..+.+... +.. ....+ +.|++++|+...-..+......+. ||||.|+..
T Consensus 110 ~~~~~ei~~~Ll~~~~~~--~~~~~~~~--~~~---~~~~~~~~~~iv~~Ll~~gadin~~~~~~g~----tpLh~A~~~ 178 (477)
T PHA02878 110 NNRNVEIFKIILTNRYKN--IQTIDLVY--IDK---KSKDDIIEAEITKLLLSYGADINMKDRHKGN----TALHYATEN 178 (477)
T ss_pred HcCCHHHHHHHHhCcccC--cccCcHHH--Hhh---ccchhhHHHHHHHHHHHcCCCCCccCCCCCC----CHHHHHHhC
Confidence 899999999998542211 11222111 111 11123 345999999865544433333378 999999999
Q ss_pred CCHhHHHhhcccccccccCCChhhHHHHHHHHhHhccCCChhhHHHhhhhhcccccCCChhhhhhhhhhhhhhccCCCHH
Q psy9003 428 GTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPE 507 (1276)
Q Consensus 428 ~~~~~~~yli~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~~~~~~~v~~~~~a~~~~~~e~~~~lv~~~~~~~~~~~~~ 507 (1276)
|+.+++++|+..+-- ++..+... .|..|.|..+|..+.+++|++.+.++|.+..
T Consensus 179 ~~~~iv~~Ll~~gad-------------------~n~~d~~g-----~tpLh~A~~~~~~~iv~~Ll~~ga~in~~d~-- 232 (477)
T PHA02878 179 KDQRLTELLLSYGAN-------------------VNIPDKTN-----NSPLHHAVKHYNKPIVHILLENGASTDARDK-- 232 (477)
T ss_pred CCHHHHHHHHHCCCC-------------------CCCcCCCC-----CCHHHHHHHhCCHHHHHHHHHcCCCCCCCCC--
Confidence 999999999875421 11111122 4778888889999999999999988887654
Q ss_pred HHHHHhhhhcccccC-CCHHHHHHHHhhhhhcCCCCCcchhhhhhhhhhccccCCCHHHHHHHHHhhhhcc--CCCChhh
Q psy9003 508 QLKYLVDECHKAGLF-GTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAG--LFGTPEQ 584 (1276)
Q Consensus 508 ~~~~~~t~~~~a~~~-g~~e~~~~lv~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~--~~~~~~~ 584 (1276)
...|+.+.|+.. ++++++++|++.++++|..+.. +.-|..+.| .++.+.+++|++.++++| .+....-
T Consensus 233 ---~g~TpLh~A~~~~~~~~iv~~Ll~~gadvn~~~~~----~g~TpLh~A--~~~~~~v~~Ll~~gadin~~d~~g~Tp 303 (477)
T PHA02878 233 ---CGNTPLHISVGYCKDYDILKLLLEHGVDVNAKSYI----LGLTALHSS--IKSERKLKLLLEYGADINSLNSYKLTP 303 (477)
T ss_pred ---CCCCHHHHHHHhcCCHHHHHHHHHcCCCCCccCCC----CCCCHHHHH--ccCHHHHHHHHHCCCCCCCcCCCCCCH
Confidence 456888888865 7999999999999998865431 234555555 467899999999999999 3333333
Q ss_pred hhhhhhhhcccccCCCHHHHHHHHhhh
Q psy9003 585 LKYLVDECHKAGLFGTPEQLKYLVDEC 611 (1276)
Q Consensus 585 ~~~~~~~~~~~~~~~~~e~~~~l~~~~ 611 (1276)
+.+.|. ....+|..++|+...
T Consensus 304 L~~A~~------~~~~~~~~~~li~~~ 324 (477)
T PHA02878 304 LSSAVK------QYLCINIGRILISNI 324 (477)
T ss_pred HHHHHH------HcCccchHHHHHHHH
Confidence 444331 123466777776543
|
|
| >PRK03705 glycogen debranching enzyme; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=4.2e-12 Score=157.44 Aligned_cols=57 Identities=14% Similarity=0.123 Sum_probs=47.9
Q ss_pred hccceEecCCcEEEEEEccCCceEEEEeecc-CCCcc---e------EEEEEccCccccceEEEEEecC
Q psy9003 64 KYGIHVQADNSVRCFEWAPSAQQLYLTGNVS-LTPWS---I------MEEASLSSIKLIQSIQYILTGV 122 (1276)
Q Consensus 64 ~fGah~~~~gg~~f~~wAP~A~~v~l~gdfn-~~~w~---m------~~~~~~~~~~~g~~yky~i~~~ 122 (1276)
-+||+...+ |+.|++|||+|++|.|+. |+ ++.+. | ||+++||++.+|+.|+|+|.++
T Consensus 11 pLGa~~~~~-g~~F~vwAP~A~~V~L~l-~~~~~~~~~~~m~~~~~gvW~~~v~~~~~G~~Y~yrv~g~ 77 (658)
T PRK03705 11 PLGAHYDGQ-GVNFTLFSAHAERVELCV-FDENGQEQRYDLPARSGDIWHGYLPGARPGLRYGYRVHGP 77 (658)
T ss_pred CcceEEeCC-CEEEEEECCCCCEEEEEE-EcCCCCeeeEeeeeccCCEEEEEECCCCCCCEEEEEEccc
Confidence 489998654 699999999999999998 74 32222 5 9999999999999999999864
|
|
| >PHA02791 ankyrin-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=7.5e-12 Score=141.51 Aligned_cols=206 Identities=13% Similarity=0.011 Sum_probs=113.8
Q ss_pred CCChhHHHHHhhhcccccCCCChhhhhcccccchhccccCCHhHHHhhcccccccccCCChhhHHHHHHHHhHhccCCCh
Q psy9003 389 FGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTP 468 (1276)
Q Consensus 389 ~~~id~vkyLi~~~h~~~~~~~~~~~~~~vt~lh~a~~~~~~~~~~yli~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~ 468 (1276)
+++-|++++||.. .. -..+.++. ||||.|+..|+.+++++|+..+-.... .+
T Consensus 9 ~~~~~~~~~Lis~--~a-~~~D~~G~----TpLh~Aa~~g~~eiv~~Ll~~ga~~n~---------------------~d 60 (284)
T PHA02791 9 WKSKQLKSFLSSK--DA-FKADVHGH----SALYYAIADNNVRLVCTLLNAGALKNL---------------------LE 60 (284)
T ss_pred cCHHHHHHHHHhC--CC-CCCCCCCC----cHHHHHHHcCCHHHHHHHHHCcCCCcC---------------------CC
Confidence 4677888888872 22 24566677 888888888888888888865421110 00
Q ss_pred hhHHHhhhhhcccccCCChhhhhhhhhhhhhhccCCCHHHHHHHhhhhcccccCCCHHHHHHHHhhhhhcCCCCCcchhh
Q psy9003 469 EQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLK 548 (1276)
Q Consensus 469 ~~~~~~v~~~~~a~~~~~~e~~~~lv~~~~~~~~~~~~~~~~~~~t~~~~a~~~g~~e~~~~lv~~~~~~~~~~t~~~l~ 548 (1276)
. -|..|.|...|+.|.+++|+..+++++.... ...|+.+.|+..|+.|++++|+..+++++..+...
T Consensus 61 ~-----~TpLh~Aa~~g~~eiV~lLL~~Gadvn~~d~-----~G~TpLh~Aa~~g~~eivk~Ll~~gadin~~~~~g--- 127 (284)
T PHA02791 61 N-----EFPLHQAATLEDTKIVKILLFSGMDDSQFDD-----KGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTG--- 127 (284)
T ss_pred C-----CCHHHHHHHCCCHHHHHHHHHCCCCCCCCCC-----CCCCHHHHHHHcCCHHHHHHHHHCCCCcCccCCCC---
Confidence 1 2555666666666666666665555554333 34566666666666666666666666555322210
Q ss_pred hhhhhhhccccCCCHHHHHHHHHhhhhccCCCChhhhhhhhhhhcccccCCCHHHHHHHHhhhhhccCCCChhhhhhhHH
Q psy9003 549 YLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVD 628 (1276)
Q Consensus 549 ~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~ 628 (1276)
.-|..+.|...|+.|.+++|++.+..+. +.+ ...|..|-|...|++|.+++|++.++++|.+-+.- .+
T Consensus 128 -~~TpL~~Aa~~g~~eivk~LL~~~~~~~-d~~-----~g~TpLh~Aa~~g~~eiv~lLL~~gAd~n~~d~~g-----~t 195 (284)
T PHA02791 128 -WKTSFYHAVMLNDVSIVSYFLSEIPSTF-DLA-----ILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLL-----FI 195 (284)
T ss_pred -CcHHHHHHHHcCCHHHHHHHHhcCCccc-ccc-----cCccHHHHHHHcCCHHHHHHHHHCCCCCCcccCCC-----CC
Confidence 0133344446666666666665432221 100 11345555556666666666666666665442211 21
Q ss_pred H-hhhccCCCCHHHHHHHHH
Q psy9003 629 E-CHKAGLFGTPEQLKYLVD 647 (1276)
Q Consensus 629 ~-~~~~~~~~~~~~~~~~~~ 647 (1276)
. ++-|...|++|.+++|++
T Consensus 196 ~~L~~Aa~~~~~e~v~lLl~ 215 (284)
T PHA02791 196 PDIKLAIDNKDLEMLQALFK 215 (284)
T ss_pred hHHHHHHHcCCHHHHHHHHH
Confidence 1 344444566666666665
|
|
| >PHA02716 CPXV016; CPX019; EVM010; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.2e-11 Score=154.67 Aligned_cols=216 Identities=7% Similarity=-0.090 Sum_probs=111.4
Q ss_pred CCChHHHHHHHhhhhccCCCCCccccchhhhhhcccccCCC--HHHHHHHhhhhhccCCCCcccchhhhhccccccccCC
Q psy9003 275 FGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGT--PEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFG 352 (1276)
Q Consensus 275 ~~~ie~~~yli~e~~~~~~~~~~~~~t~~~~~~~~a~~~gs--i~~l~~Lv~~~~~~~~~~~~~~~~~~~~~~~~a~~~g 352 (1276)
.+++|+|++|++. .+++-..+..|.| ++|.|+..|+ .|++++|++..-.++ ..+......+..+..++..+
T Consensus 189 ~~~~eIVklLLe~-GADVN~kD~~G~T----PLH~Aa~~g~~~~eIVklLLe~GADVN--~kD~~G~TPLh~Ai~~a~n~ 261 (764)
T PHA02716 189 YVDIDILEWLCNN-GVNVNLQNNHLIT----PLHTYLITGNVCASVIKKIIELGGDMD--MKCVNGMSPIMTYIINIDNI 261 (764)
T ss_pred cCCHHHHHHHHHc-CCCCCCCCCCCCC----HHHHHHHcCCCCHHHHHHHHHcCCCCC--CCCCCCCCHHHHHHHhhhcc
Confidence 3456777777763 2444444433333 3344555664 367777776653333 22222211111111233456
Q ss_pred ChhhhHHhhhhhccccCCCChhhHHHHHhhhcccccCCChhHHHHHhhhcccccCCCChhhhhcccccchhcc--ccCCH
Q psy9003 353 TPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAG--LFGTP 430 (1276)
Q Consensus 353 ~ie~~~yLi~~~h~~~~~~~~e~~~~~~~~~~~a~~~~~id~vkyLi~~~h~~~~~~~~~~~~~~vt~lh~a~--~~~~~ 430 (1276)
+.|+++.|++........+.+..+...+ .|...|++|+|++|+.. ..+....+..|. ||||.|+ ..++.
T Consensus 262 ~~EIvkiLie~~d~n~~~~~~~~L~~~i----~AA~~g~leiVklLLe~-GAdIN~kD~~G~----TPLH~Aaa~~~~~~ 332 (764)
T PHA02716 262 NPEITNIYIESLDGNKVKNIPMILHSYI----TLARNIDISVVYSFLQP-GVKLHYKDSAGR----TCLHQYILRHNIST 332 (764)
T ss_pred CHHHHHHHHHhccccccccchhhhHHHH----HHHHcCCHHHHHHHHhC-CCceeccCCCCC----CHHHHHHHHhCCCc
Confidence 7777777766543333333332221111 12234777777777753 233444455666 7777654 23566
Q ss_pred hHHHhhcccccccccCCChhhHHHHHHHHhHhccCCChhhHHHhhhhhccccc--------------CCChhhhhhhhhh
Q psy9003 431 EQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGL--------------FGTPEQLKYLVDE 496 (1276)
Q Consensus 431 ~~~~yli~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~~~~~~~v~~~~~a~~--------------~~~~e~~~~lv~~ 496 (1276)
+++++|+..+ .+..+.+.. . .|..|.|.. ++..|.+++|++.
T Consensus 333 eIVklLLe~G-ADIN~kD~~------------------G-----~TPLH~A~~~lav~~~ld~~~~~~~~~eVVklLL~~ 388 (764)
T PHA02716 333 DIIKLLHEYG-NDLNEPDNI------------------G-----NTVLHTYLSMLSVVNILDPETDNDIRLDVIQCLISL 388 (764)
T ss_pred hHHHHHHHcC-CCCccCCCC------------------C-----CCHHHHHHHhhhhhccccccccccChHHHHHHHHHC
Confidence 7777766543 122111111 1 455665532 2566777777776
Q ss_pred hhhhccCCCHHHHHHHhhhhc----ccccCCCHHHHHHHHhhh
Q psy9003 497 CHKAGLFGTPEQLKYLVDECH----KAGLFGTPEQLKYLVDEC 535 (1276)
Q Consensus 497 ~~~~~~~~~~~~~~~~~t~~~----~a~~~g~~e~~~~lv~~~ 535 (1276)
+++++.+.. ...|+.+ .|...+..+++++|+...
T Consensus 389 GADIn~kn~-----~G~TPLh~y~~~a~n~~~~dIvklLis~~ 426 (764)
T PHA02716 389 GADITAVNC-----LGYTPLTSYICTAQNYMYYDIIDCLISDK 426 (764)
T ss_pred CCCCCCcCC-----CCCChHHHHHHHHHhcChHHHHHHHHhCc
Confidence 666665544 5577776 344556777777777654
|
|
| >cd02856 Glycogen_debranching_enzyme_N_term Glycogen_debranching_enzyme N-terminal domain | Back alignment and domain information |
|---|
Probab=99.30 E-value=5.9e-12 Score=121.75 Aligned_cols=86 Identities=16% Similarity=0.105 Sum_probs=69.1
Q ss_pred cccCeeecCceEEEEEccCCcEEEEEccCCCCc-cccccceecCCCeEEEEcCCCCCCCcccCcccEEEEEEEEe----C
Q psy9003 772 PEQLKYLVDECHKAGLLCFMHVVCAAGDFNNWN-REEFAYKKLDFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQ----H 846 (1276)
Q Consensus 772 p~G~~y~~D~a~FalwAP~A~~VsLvGDFN~wd-~~~~pM~r~~~GVWsl~Ip~~~~G~~~i~hGs~YkYrV~~~----d 846 (1276)
|+|+++..++++|++|||+|++|+|+. |+++. ...++|.+.++|+|++.+++... |..|+|+|+++ +
T Consensus 1 plGa~~~~~g~~F~vwAP~A~~V~L~l-~~~~~~~~~~~m~~~~~GvW~~~v~~~~~-------g~~Y~y~i~g~~~p~~ 72 (103)
T cd02856 1 PLGATLDGEGCNFAVHSENATRIELCL-FDEDGSETRLPLTEEYGGVWHGFLPGIKA-------GQRYGFRVHGPYDPER 72 (103)
T ss_pred CCccEEeCCCeEEEEECCCCCEEEEEE-EeCCCCEEEEEcccccCCEEEEEECCCCC-------CCEEEEEECCccCccc
Confidence 678999999999999999999999986 44443 45689988889999999997755 46999999761 1
Q ss_pred C----eeeeecCCcceEeecCCC
Q psy9003 847 G----HLLDRLSPWATYVTEPPV 865 (1276)
Q Consensus 847 G----~~~~~~DPYAkav~~~~~ 865 (1276)
| .....+||||+++.....
T Consensus 73 ~~~~~~~~~~~DPYA~~~~~~~~ 95 (103)
T cd02856 73 GLRFNPAKLLLDPYARALDGPLA 95 (103)
T ss_pred CcccCCCeEEecCCcceEcCCcc
Confidence 2 235789999999976544
|
Glycogen debranching enzymes have both 4-alpha-glucanotransferase and amylo-1,6-glucosidase activities. As a transferase it transfers a segment of a 1,4-alpha-D-glucan to a new 4-position in an acceptor, which may be glucose or another 1,4-alpha-D-glucan. As a glucosidase it catalyzes the endohydrolysis of 1,6-alpha-D-glucoside linkages at points of branching in chains of 1,4-linked alpha-D-glucose residues. The N-terminus of the glycogen debranching enzyme may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase. |
| >PHA02791 ankyrin-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=5.1e-12 Score=142.87 Aligned_cols=176 Identities=13% Similarity=0.016 Sum_probs=117.7
Q ss_pred cCCChhHHHHHhhhcccccCCCChhhhhcccccchhccccCCHhHHHhhcccccccccCCChhhHHHHHHHHhHhccCCC
Q psy9003 388 LFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGT 467 (1276)
Q Consensus 388 ~~~~id~vkyLi~~~h~~~~~~~~~~~~~~vt~lh~a~~~~~~~~~~yli~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~ 467 (1276)
..|++|+|++|+. ..++.-..+.++. ||||.|+..|+.+++++||..+--...++.
T Consensus 70 ~~g~~eiV~lLL~-~Gadvn~~d~~G~----TpLh~Aa~~g~~eivk~Ll~~gadin~~~~------------------- 125 (284)
T PHA02791 70 TLEDTKIVKILLF-SGMDDSQFDDKGN----TALYYAVDSGNMQTVKLFVKKNWRLMFYGK------------------- 125 (284)
T ss_pred HCCCHHHHHHHHH-CCCCCCCCCCCCC----CHHHHHHHcCCHHHHHHHHHCCCCcCccCC-------------------
Confidence 3566777777764 2344445566677 888888888888888888865421111110
Q ss_pred hhhHHHhhhhhcccccCCChhhhhhhhhhhhhhccCCCHHHHHHHhhhhcccccCCCHHHHHHHHhhhhhcCCCCCcchh
Q psy9003 468 PEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQL 547 (1276)
Q Consensus 468 ~~~~~~~v~~~~~a~~~~~~e~~~~lv~~~~~~~~~~~~~~~~~~~t~~~~a~~~g~~e~~~~lv~~~~~~~~~~t~~~l 547 (1276)
.. --|..|.|...|..|.+++|+.....+. .. ....|+.|.|...|++|++++|++.++++|..+.
T Consensus 126 ~g----~~TpL~~Aa~~g~~eivk~LL~~~~~~~--d~----~~g~TpLh~Aa~~g~~eiv~lLL~~gAd~n~~d~---- 191 (284)
T PHA02791 126 TG----WKTSFYHAVMLNDVSIVSYFLSEIPSTF--DL----AILLSCIHITIKNGHVDMMILLLDYMTSTNTNNS---- 191 (284)
T ss_pred CC----CcHHHHHHHHcCCHHHHHHHHhcCCccc--cc----ccCccHHHHHHHcCCHHHHHHHHHCCCCCCcccC----
Confidence 01 0145566666777777777766432111 10 1236899999999999999999999988875544
Q ss_pred hhhhhh-hhccccCCCHHHHHHHHHhhhhccCCCChhhhhhhhhhhcccccCCCHHHHHHHHhhhhhc
Q psy9003 548 KYLVDE-CHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKA 614 (1276)
Q Consensus 548 ~~~~~~-~~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~ 614 (1276)
+..|. .+.|...|++|.+++|++.++++|..... +..-|+-|.+|+|.+.-.|.
T Consensus 192 -~g~t~~L~~Aa~~~~~e~v~lLl~~Ga~in~~~~~------------~~~l~~~e~~~~ll~~~~~~ 246 (284)
T PHA02791 192 -LLFIPDIKLAIDNKDLEMLQALFKYDINIYSVNLE------------NVLLDDAEIAKMIIEKHVEY 246 (284)
T ss_pred -CCCChHHHHHHHcCCHHHHHHHHHCCCCCccCccc------------CccCCCHHHHHHHHHhhhhh
Confidence 33333 57777999999999999999888733221 23448899999999887776
|
|
| >KOG4177|consensus | Back alignment and domain information |
|---|
Probab=99.30 E-value=3.9e-12 Score=162.00 Aligned_cols=481 Identities=19% Similarity=0.155 Sum_probs=274.6
Q ss_pred cccccCCCCcchhhhhhhccccccCCCCccccchhhhhhhcccCCCCHHHHHhhhhh--------------hcccccCCC
Q psy9003 212 CHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDE--------------CHKAGLFGT 277 (1276)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~g~~~~~~~li~~--------------~h~~~~~~~ 277 (1276)
+|.++.++..+|.+.|.+. ....+.. .+=.++.+|-|-..|..+.++.|+.. .||+.+.++
T Consensus 58 l~~aa~~~~~~v~~~ll~~---~a~v~~~--~~~~~~plh~a~~~~~a~~v~~ll~~ga~~~~~~~~~lTpLh~aa~~g~ 132 (1143)
T KOG4177|consen 58 LHIAAHYGNENVAELLLNR---GAIVNAT--ARNGITPLHVASKRGDAEMVKLLLCRGAQIDARDRDGLTPLHCAARKGH 132 (1143)
T ss_pred HHHHhhhhhhhhhhhhhcc---ccccCcc--cccCccHHHHHHhhcchhHHHHHHhccCchhhcccCCCcchhhhccccc
Confidence 4555555556666666532 2222211 01113335666666666666666653 477778888
Q ss_pred hHHHHHHHhhhhccCCCC-CccccchhhhhhcccccCCCHHHHHHHhh-----------hhhccCCCCcccchhh-----
Q psy9003 278 PEQLKYLVDECHKAGLFG-TPEQLKYLVDECHKAGLFGTPEQLKYLVD-----------ECHKAGLFGTPEQLKY----- 340 (1276)
Q Consensus 278 ie~~~yli~e~~~~~~~~-~~~~~t~~~~~~~~a~~~gsi~~l~~Lv~-----------~~~~~~~~~~~~~~~~----- 340 (1276)
++++.+|.. +|+|+.. ++.|.+.+ +.++. +.-.++|.+ -+||-..-....++..
T Consensus 133 ~~~~~~ll~--~~a~~~~k~~~g~t~l----~~a~~---~~~~~ll~~~~~~d~l~~~~~~~~~~~~~~~ll~~~~~~~~ 203 (1143)
T KOG4177|consen 133 VQVIELLLQ--HGAPINIKTKNGLSPL----HMAAQ---VACARLLLEYKAPDYLRLHVAAHCGHARVAKLLLDKKADPN 203 (1143)
T ss_pred HHHHHHHHH--ccCCCcccccCCCCch----hhhcc---hhhhHHhhhcccchhhhhhHHhhcchHHHHhhhhcccCCcc
Confidence 888888888 5565543 44444444 43333 333333322 2222220000000000
Q ss_pred -----hhccccccccCCChhhhHHhhhhhccccCCCChhhHHHHHhhhcccccCCChhHHHHHhhhcccccCCCChhhhh
Q psy9003 341 -----LVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLK 415 (1276)
Q Consensus 341 -----~~~~~~~a~~~g~ie~~~yLi~~~h~~~~~~~~e~~~~~~~~~~~a~~~~~id~vkyLi~~~h~~~~~~~~~~~~ 415 (1276)
-.|+.+.||-.+.|+++-+|+--. +.+...++ ..++..+-|.-.|+++|+++|+-.+=|-+ +.+..++
T Consensus 204 a~~~~~~tpl~~a~~~nri~~~eLll~~g--adv~a~d~---~gl~~lh~a~~~g~~~i~~~l~~~ga~~~-~~~vr~~- 276 (1143)
T KOG4177|consen 204 ASALNGFTPLHIACKKNRIKVVELLLKHG--ADVSAKDE---SGLTPLHVAAFMGHLDIVKLLLQHGASVN-VSTVRGE- 276 (1143)
T ss_pred ccccCCCCchhhhccccccceeeeeeecc--CcCCcccc---cCccHHHHHHhccchhHHHHHHhcccccC-ccccccc-
Confidence 035666667777777776663322 22222222 13344455555799999999998766433 4566788
Q ss_pred cccccchhccccCCHhHHHhhcccccc--------------cccCCChhhHHHHHHHHhHhccCCChhhHHHhhhhhccc
Q psy9003 416 YLVDECHKAGLFGTPEQLKYLVDECHK--------------AGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKA 481 (1276)
Q Consensus 416 ~~vt~lh~a~~~~~~~~~~yli~~~~~--------------~~~~~~~e~l~~l~~~~~~~~~~~~~~~~~~~v~~~~~a 481 (1276)
||+|.||+.+..|+.+||+..+-. ++-.+-.+...++......++-.++.. .+..|.+
T Consensus 277 ---tplh~AA~~~~~e~~~~ll~~ga~~~~~~~~~kt~l~~a~~~g~~~i~~~~l~~~~~~~aar~~g-----~t~lHla 348 (1143)
T KOG4177|consen 277 ---TPLHMAARAGQVEVCKLLLQNGADVLAKARDDQTPLHIASRLGHEEIVHLLLQAGATPNAARTAG-----YTPLHLA 348 (1143)
T ss_pred ---CcchhhhccchhhhHhhhhccCcccccccccccChhhhhcccchHHHHHHHhhccCCccccCcCC-----cccccHh
Confidence 999999999999999999865322 222222223222222222222222222 5667777
Q ss_pred ccCCChhhhhhhhhhhhhhccCCCHHHHHHHhhhhcccccCCCHHHHHHHHhhhhhcCCCCCcchhhhhhhhhhccccCC
Q psy9003 482 GLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFG 561 (1276)
Q Consensus 482 ~~~~~~e~~~~lv~~~~~~~~~~~~~~~~~~~t~~~~a~~~g~~e~~~~lv~~~~~~~~~~t~~~l~~~~~~~~~~~~~~ 561 (1276)
.-++..|-+.+|-+.++.-..- -++.+|+++-|+..|..+++.+|-..+...+.-.- ..+|-.+.+-.-+
T Consensus 349 a~~~~~~~~~~l~~~~~~~~~a-----~~k~~~pl~la~~~g~~~~v~Lll~~ga~~~~~gk-----~gvTplh~aa~~~ 418 (1143)
T KOG4177|consen 349 AKEGQVEVAGALLEHGAQRRQA-----EEKGFTPLHLAVKSGRVSVVELLLEAGADPNSAGK-----NGVTPLHVAAHYG 418 (1143)
T ss_pred hhhhhHHHHHHhhccccccCcc-----cccCCcchhhhcccCchhHHHhhhhccCCcccCCC-----CCcceeeehhhcc
Confidence 7666666444443333332211 12448999999999999999999999888654444 6777788888888
Q ss_pred CHHHHHHHHHhhhhccCCCChhhhhhhhhhhcccccCC-CHHHHHHHHhhhhhccCCCChhhhhhhHHHhhhccCCCCHH
Q psy9003 562 TPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFG-TPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPE 640 (1276)
Q Consensus 562 ~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 640 (1276)
+...++.+++.++..|.... ..-|..|.|...| ..+..-++...+.++|..+..= ++..+-|.--|+.|
T Consensus 419 ~~~~v~l~l~~gA~~~~~~~-----lG~T~lhvaa~~g~~~~~~~~l~~~g~~~n~~s~~G-----~T~Lhlaaq~Gh~~ 488 (1143)
T KOG4177|consen 419 NPRVVKLLLKRGASPNAKAK-----LGYTPLHVAAKKGRYLQIARLLLQYGADPNAVSKQG-----FTPLHLAAQEGHTE 488 (1143)
T ss_pred CcceEEEEeccCCChhhHhh-----cCCChhhhhhhcccHhhhhhhHhhcCCCcchhcccc-----CcchhhhhccCCch
Confidence 88888888887777763221 1245666666777 6666677777788887765544 55444444448888
Q ss_pred HHHHHHHHHHhhcCCCChHHHhhhhhhhhhcccCCChhHHHHHHH--------------HHHhhccCCChhHHHhhHH--
Q psy9003 641 QLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVD--------------ECHKAGLFGTPEQLKYLVD-- 704 (1276)
Q Consensus 641 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~-- 704 (1276)
.++.|.+-..- .. .-.+..+..+|.|+--+++..++.+++ .+|.|-.++++..||+|++
T Consensus 489 ~~~llle~~~~----~~-~~~~~~l~~lhla~~~~~v~~~~~l~~~ga~v~~~~~r~~TpLh~A~~~g~v~~VkfLLe~g 563 (1143)
T KOG4177|consen 489 VVQLLLEGGAN----DN-LDAKKGLTPLHLAADEDTVKVAKILLEHGANVDLRTGRGYTPLHVAVHYGNVDLVKFLLEHG 563 (1143)
T ss_pred HHHHhhhcCCc----cC-ccchhccchhhhhhhhhhHHHHHHHhhcCCceehhcccccchHHHHHhcCCchHHHHhhhCC
Confidence 88777773310 11 112333344444444444444444443 4444444444444444444
Q ss_pred ------------HHhhcccCCCHHHHHHHHHH--------------HHhccCCCCchhhhhhhhhhhc
Q psy9003 705 ------------ECHKAGLFGTPEQLKYLVDE--------------CHKAGLFGTPEQLKYLVDECHK 746 (1276)
Q Consensus 705 ------------~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~ 746 (1276)
.+|.|+.+|+-+++-+||.- ++.|=..|.+..+|++...=+.
T Consensus 564 Adv~ak~~~G~TPLH~Aa~~G~~~i~~LLlk~GA~vna~d~~g~TpL~iA~~lg~~~~~k~l~~~~~~ 631 (1143)
T KOG4177|consen 564 ADVNAKDKLGYTPLHQAAQQGHNDIAELLLKHGASVNAADLDGFTPLHIAVRLGYLSVVKLLKVVTAT 631 (1143)
T ss_pred ccccccCCCCCChhhHHHHcChHHHHHHHHHcCCCCCcccccCcchhHHHHHhcccchhhHHHhccCc
Confidence 47888888888888888765 5566666666777766654433
|
|
| >cd02854 Glycogen_branching_enzyme_like_N_term Glycogen branching enzyme-like N-terminus domain | Back alignment and domain information |
|---|
Probab=99.29 E-value=4.8e-12 Score=122.30 Aligned_cols=54 Identities=26% Similarity=0.428 Sum_probs=46.6
Q ss_pred cCCcEEEEEEccCCceEEEEeecc-CCCcc--e------EEEEEccC-------ccccceEEEEEecCCC
Q psy9003 71 ADNSVRCFEWAPSAQQLYLTGNVS-LTPWS--I------MEEASLSS-------IKLIQSIQYILTGVFG 124 (1276)
Q Consensus 71 ~~gg~~f~~wAP~A~~v~l~gdfn-~~~w~--m------~~~~~~~~-------~~~g~~yky~i~~~~g 124 (1276)
+++|++||+|||+|++|+|+|||| |+... | +|+++||+ ++.|+.|||+|.+++|
T Consensus 3 ~~~g~~FrvwAP~A~~V~l~GdFn~W~~~~~~m~k~~~G~W~~~i~~~~~~~~~~~~g~~Yky~i~~~~G 72 (99)
T cd02854 3 EDGGVTYREWAPNAEEVYLIGDFNNWDRNAHPLKKDEFGVWEITIPPNEDGSPAIPHGSKIKVRMVTPSG 72 (99)
T ss_pred CCCeEEEEEECCCCCEEEEEccCCCCCCcCcccEECCCCEEEEEECCcccccccCCCCCEEEEEEEeCCC
Confidence 366899999999999999999995 43322 6 99999999 5799999999999888
|
Glycogen branching enzyme (AKA 1,4 alpha glucan branching enzyme) catalyzes the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends glycogen is more reactive to synthesis and digestion as well as being more soluble. The N-terminus of the glycogen branching enzyme-like proteins may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobi |
| >PHA02878 ankyrin repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=5.3e-12 Score=150.93 Aligned_cols=283 Identities=12% Similarity=-0.025 Sum_probs=176.1
Q ss_pred chhhhhhcccccCCCHHHHHHHhhhhhccCCCCcccchhhhhccccccccCCChhhhHHhhhhhccccCCCChhhHHHHH
Q psy9003 301 KYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLV 380 (1276)
Q Consensus 301 t~~~~~~~~a~~~gsi~~l~~Lv~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~ie~~~yLi~~~h~~~~~~~~e~~~~~~ 380 (1276)
....|++|.|+..|+.|.+++|++... +++..+. ...|+.|.|+..|+.+.+++|+..........+ .
T Consensus 35 ~~~~tPLh~A~~~g~~e~vk~Ll~~ga--dvn~~d~---~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~-------~ 102 (477)
T PHA02878 35 LIPFIPLHQAVEARNLDVVKSLLTRGH--NVNQPDH---RDLTPLHIICKEPNKLGMKEMIRSINKCSVFYT-------L 102 (477)
T ss_pred ccCcchHHHHHHcCCHHHHHHHHHCCC--CCCCCCC---CCCCHHHHHHHCccHhHHHHHHHHHhccccccc-------h
Confidence 345667888999999999999998754 3333321 335788889999999999999876543333211 1
Q ss_pred hhhcccccCCChhHHHHHhhhcccccCCCChhhhhcccccchhccccCC--HhHHHhhcccccccccCCChhhHHHHHHH
Q psy9003 381 DECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGT--PEQLKYLVDECHKAGLFGTPEQLKYLVDE 458 (1276)
Q Consensus 381 ~~~~~a~~~~~id~vkyLi~~~h~~~~~~~~~~~~~~vt~lh~a~~~~~--~~~~~yli~~~~~~~~~~~~e~l~~l~~~ 458 (1276)
+..+.|+..|+.|++++|+..-....-..+. ..+..+...+. .+++++|+..
T Consensus 103 ~~l~~a~~~~~~ei~~~Ll~~~~~~~~~~~~-------~~~~~~~~~~~~~~~iv~~Ll~~------------------- 156 (477)
T PHA02878 103 VAIKDAFNNRNVEIFKIILTNRYKNIQTIDL-------VYIDKKSKDDIIEAEITKLLLSY------------------- 156 (477)
T ss_pred hhHHHHHHcCCHHHHHHHHhCcccCcccCcH-------HHHhhccchhhHHHHHHHHHHHc-------------------
Confidence 2223344467888888887542111000000 00111111111 2244444433
Q ss_pred HhHhccCCCh-hhHHHhhhhhcccccCCChhhhhhhhhhhhhhccCCCHHHHHHHhhhhcccccCCCHHHHHHHHhhhhh
Q psy9003 459 CHKAGLFGTP-EQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHK 537 (1276)
Q Consensus 459 ~~~~~~~~~~-~~~~~~v~~~~~a~~~~~~e~~~~lv~~~~~~~~~~~~~~~~~~~t~~~~a~~~g~~e~~~~lv~~~~~ 537 (1276)
...++..+.. . .|..|.|..+|..|.+++|++.++++|.... ...|+.+.|...|+.+++++|++.+++
T Consensus 157 gadin~~~~~~g-----~tpLh~A~~~~~~~iv~~Ll~~gad~n~~d~-----~g~tpLh~A~~~~~~~iv~~Ll~~ga~ 226 (477)
T PHA02878 157 GADINMKDRHKG-----NTALHYATENKDQRLTELLLSYGANVNIPDK-----TNNSPLHHAVKHYNKPIVHILLENGAS 226 (477)
T ss_pred CCCCCccCCCCC-----CCHHHHHHhCCCHHHHHHHHHCCCCCCCcCC-----CCCCHHHHHHHhCCHHHHHHHHHcCCC
Confidence 3333322222 2 5778888889999999999998888876553 346888889999999999999999988
Q ss_pred cCCCCCcchhhhhhhhhhccccC-CCHHHHHHHHHhhhhccCCCChhhhhhhhhhhcccccCCCHHHHHHHHhhhhhccC
Q psy9003 538 AGLFGTPEQLKYLVDECHKAGLF-GTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGL 616 (1276)
Q Consensus 538 ~~~~~t~~~l~~~~~~~~~~~~~-~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~ 616 (1276)
+|..+. +.-|..+.|... ++++.+++|++.++++|...+. ...|..+-| .++.+.+++|++.++++|.
T Consensus 227 in~~d~-----~g~TpLh~A~~~~~~~~iv~~Ll~~gadvn~~~~~----~g~TpLh~A--~~~~~~v~~Ll~~gadin~ 295 (477)
T PHA02878 227 TDARDK-----CGNTPLHISVGYCKDYDILKLLLEHGVDVNAKSYI----LGLTALHSS--IKSERKLKLLLEYGADINS 295 (477)
T ss_pred CCCCCC-----CCCCHHHHHHHhcCCHHHHHHHHHcCCCCCccCCC----CCCCHHHHH--ccCHHHHHHHHHCCCCCCC
Confidence 886554 333444444443 6899999999999988844321 123555555 4678889999999999887
Q ss_pred CCChhhhhhhHHHhhhcc-CCCCHHHHHHHHH
Q psy9003 617 FGTPEQLKYLVDECHKAG-LFGTPEQLKYLVD 647 (1276)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 647 (1276)
.-..- -+..+.|. .+..++..++|+.
T Consensus 296 ~d~~g-----~TpL~~A~~~~~~~~~~~~li~ 322 (477)
T PHA02878 296 LNSYK-----LTPLSSAVKQYLCINIGRILIS 322 (477)
T ss_pred cCCCC-----CCHHHHHHHHcCccchHHHHHH
Confidence 54433 23333332 2335566666665
|
|
| >TIGR02100 glgX_debranch glycogen debranching enzyme GlgX | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.2e-11 Score=154.34 Aligned_cols=56 Identities=14% Similarity=0.116 Sum_probs=46.2
Q ss_pred hccceEecCCcEEEEEEccCCceEEEEeecc-CC--Ccc---e------EEEEEccCccccceEEEEEec
Q psy9003 64 KYGIHVQADNSVRCFEWAPSAQQLYLTGNVS-LT--PWS---I------MEEASLSSIKLIQSIQYILTG 121 (1276)
Q Consensus 64 ~fGah~~~~gg~~f~~wAP~A~~v~l~gdfn-~~--~w~---m------~~~~~~~~~~~g~~yky~i~~ 121 (1276)
.+||+...+ |++|++|||+|++|.|. -|+ ++ ++. | ||+++||++.+|+.|+|||.+
T Consensus 6 ~LGa~~~~~-g~~F~vwap~A~~V~L~-l~~~~~~~~~~~~~m~~~~~gvW~~~v~~~~~g~~Y~yrv~g 73 (688)
T TIGR02100 6 PLGATWDGQ-GVNFALFSANAEKVELC-LFDAQGEKEEARLPLPERTDDIWHGYLPGAQPGQLYGYRVHG 73 (688)
T ss_pred CCCeEEeCC-cEEEEEECCCCCEEEEE-EEcCCCCceeeEEecccCCCCEEEEEECCCCCCCEEEEEEee
Confidence 489998654 59999999999999987 452 21 222 5 999999999999999999987
|
This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase. |
| >TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.3e-11 Score=156.22 Aligned_cols=95 Identities=22% Similarity=0.165 Sum_probs=76.4
Q ss_pred ccceEecCCcEEEEEEccCCceEEEEeecc-CCCcc---e-------EEEEEccCccccceEEEEEecC---CC------
Q psy9003 65 YGIHVQADNSVRCFEWAPSAQQLYLTGNVS-LTPWS---I-------MEEASLSSIKLIQSIQYILTGV---FG------ 124 (1276)
Q Consensus 65 fGah~~~~gg~~f~~wAP~A~~v~l~gdfn-~~~w~---m-------~~~~~~~~~~~g~~yky~i~~~---~g------ 124 (1276)
||||... +|++|++|||+|++|.|++.++ |+.+. | ||++++|+...|+.|+|+|... .|
T Consensus 128 LGa~~~~-~gv~FrVWAPtA~~V~L~Ly~~~~~~~~~~~M~~~~~~GVWsv~v~g~~~G~~Y~Y~V~v~~p~~G~v~~~~ 206 (898)
T TIGR02103 128 LGATLTD-SGVTFRLWAPTAQQVKLHIYSASKKVETTLPMTRDSTSGVWSAEGGSSWKGAYYRYEVTVYHPSTGKVETYL 206 (898)
T ss_pred CCcEEeC-CcEEEEEECCCCCEEEEEEEcCCCCccceEeCccCCCCCEEEEEECcCCCCCEeEEEEEEecCCCCeECCeE
Confidence 9999864 4799999999999999997763 33333 5 9999999999999999988731 12
Q ss_pred ----------CCCccccccc------------------------------cccccc---------------CCChHHHHH
Q psy9003 125 ----------TPEQLKYLVD------------------------------ECHKAG---------------LFGTPEQLK 149 (1276)
Q Consensus 125 ----------rp~~as~~~d------------------------------e~h~gs---------------~~~y~e~a~ 149 (1276)
+|++.|+|+| |+|+++ |..+.|...
T Consensus 207 v~DPYA~als~n~~~S~VvDl~~~~~~p~~W~~~~~p~p~~~~~~d~iIYElHVRDFS~~d~s~~~~~rGtYla~tE~~t 286 (898)
T TIGR02103 207 VTDPYSVSLSANSEYSQVVDLNDPALKPEGWDALAMPKPQLASFADMVLYELHIRDFSANDESVPAELRGKYLAFTAADS 286 (898)
T ss_pred EeCcCcceEcCCCCCeEEeCCccccCCCcchhhcccccCCcCCCcccEEEEEeccccccCCCCCCcCcCceeeehhccch
Confidence 6777777776 999987 667777777
Q ss_pred HHHHHHH---hcCc
Q psy9003 150 YLVDECH---KAGL 160 (1276)
Q Consensus 150 ~li~y~~---~~~y 160 (1276)
..|+||| ++|+
T Consensus 287 ~gi~hLk~L~eLGV 300 (898)
T TIGR02103 287 AGVQHLKKLADAGV 300 (898)
T ss_pred hhhHHHHHHHhCCC
Confidence 7888887 6799
|
Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102). |
| >PHA02989 ankyrin repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.6e-11 Score=145.89 Aligned_cols=216 Identities=10% Similarity=-0.052 Sum_probs=126.1
Q ss_pred CCChhHHHHHhhhcccccCCCChhhhhcccccchhccc---cCCHhHHHhhcccccccccCCChhhHHHHHHHHhHhccC
Q psy9003 389 FGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGL---FGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLF 465 (1276)
Q Consensus 389 ~~~id~vkyLi~~~h~~~~~~~~~~~~~~vt~lh~a~~---~~~~~~~~yli~~~~~~~~~~~~e~l~~l~~~~~~~~~~ 465 (1276)
.|+.|+|++|+... .+.-..+.+|. ||||.|+. .++.|+|++|++.+--..-..+
T Consensus 85 ~~~~~iv~~Ll~~G-adin~~d~~g~----tpL~~a~~~~~~~~~eiv~~Ll~~Gadin~~~d----------------- 142 (494)
T PHA02989 85 NKIKKIVKLLLKFG-ADINLKTFNGV----SPIVCFIYNSNINNCDMLRFLLSKGINVNDVKN----------------- 142 (494)
T ss_pred hhHHHHHHHHHHCC-CCCCCCCCCCC----cHHHHHHHhcccCcHHHHHHHHHCCCCcccccC-----------------
Confidence 35667777777543 33333455566 88886653 2566777777765411100111
Q ss_pred CChhhHHHhhhhhcccc--cCCChhhhhhhhhhhhhhccCCCHHHHHHHhhhhcccc----cCCCHHHHHHHHhhhhhcC
Q psy9003 466 GTPEQLKYLVDECHKAG--LFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAG----LFGTPEQLKYLVDECHKAG 539 (1276)
Q Consensus 466 ~~~~~~~~~v~~~~~a~--~~~~~e~~~~lv~~~~~~~~~~~~~~~~~~~t~~~~a~----~~g~~e~~~~lv~~~~~~~ 539 (1276)
... .|..|.|. .+++.|.+++|++.+++++...+ .+..|+.+.|+ ..|++|++++|++.++++|
T Consensus 143 -~~g-----~tpLh~a~~~~~~~~~iv~~Ll~~Gadi~~~~~----~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~vn 212 (494)
T PHA02989 143 -SRG-----YNLLHMYLESFSVKKDVIKILLSFGVNLFEKTS----LYGLTPMNIYLRNDIDVISIKVIKYLIKKGVNIE 212 (494)
T ss_pred -CCC-----CCHHHHHHHhccCCHHHHHHHHHcCCCcccccc----ccCCChHHHHHhcccccccHHHHHHHHhCCCCcc
Confidence 111 34455543 23567777777777776664211 12234444333 3468899999998888877
Q ss_pred CCCCc-chhhhhhhhhhccccCCCHHHHHHHHHhhhhccCCCChhhhhhhhhhhcccccCCCHHHHHHHHhhhhhccCCC
Q psy9003 540 LFGTP-EQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFG 618 (1276)
Q Consensus 540 ~~~t~-~~l~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~ 618 (1276)
..+.. .++....-...+++..+.++.+++|.. ++++|..... .-|..+.|...|+.|.+++|++.++++|.+-
T Consensus 213 ~~~~~~~t~l~~~~~~~~~~~~~~~~il~~l~~-~advn~~d~~-----G~TpL~~Aa~~~~~~~v~~LL~~Gadin~~d 286 (494)
T PHA02989 213 TNNNGSESVLESFLDNNKILSKKEFKVLNFILK-YIKINKKDKK-----GFNPLLISAKVDNYEAFNYLLKLGDDIYNVS 286 (494)
T ss_pred ccCCccccHHHHHHHhchhhcccchHHHHHHHh-CCCCCCCCCC-----CCCHHHHHHHhcCHHHHHHHHHcCCCccccC
Confidence 44432 122222223344555677888887654 4666632222 2455555667888899999999888887764
Q ss_pred ChhhhhhhHHHhhhccCCCCHHHHHHHHH
Q psy9003 619 TPEQLKYLVDECHKAGLFGTPEQLKYLVD 647 (1276)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 647 (1276)
... .++.+.|...|..+.++.|++
T Consensus 287 ~~G-----~TpL~~A~~~~~~~iv~~LL~ 310 (494)
T PHA02989 287 KDG-----DTVLTYAIKHGNIDMLNRILQ 310 (494)
T ss_pred CCC-----CCHHHHHHHcCCHHHHHHHHh
Confidence 433 566666667788887777775
|
|
| >PHA03095 ankyrin-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=4.3e-11 Score=141.64 Aligned_cols=59 Identities=12% Similarity=0.016 Sum_probs=24.7
Q ss_pred hhhcccccCC-ChhhhhhhhhhhhhhccCCCHHHHHHHhhhhcccc--cCCCHHHHHHHHhhhhhcC
Q psy9003 476 DECHKAGLFG-TPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAG--LFGTPEQLKYLVDECHKAG 539 (1276)
Q Consensus 476 ~~~~~a~~~~-~~e~~~~lv~~~~~~~~~~~~~~~~~~~t~~~~a~--~~g~~e~~~~lv~~~~~~~ 539 (1276)
|..|.|..+| +.+.+++|++.+.++|.... ...|+.|.|+ ..++.+++++|++.+++++
T Consensus 85 TpLh~A~~~~~~~~iv~lLl~~ga~in~~~~-----~g~tpLh~a~~~~~~~~~iv~~Ll~~gad~~ 146 (471)
T PHA03095 85 TPLHLYLYNATTLDVIKLLIKAGADVNAKDK-----VGRTPLHVYLSGFNINPKVIRLLLRKGADVN 146 (471)
T ss_pred CHHHHHHHcCCcHHHHHHHHHcCCCCCCCCC-----CCCCHHHHHhhCCcCCHHHHHHHHHcCCCCC
Confidence 3444444444 34444444444444443322 1223333333 3344444444444444444
|
|
| >KOG4177|consensus | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.5e-11 Score=156.83 Aligned_cols=451 Identities=20% Similarity=0.152 Sum_probs=271.1
Q ss_pred hhhhhhhcccCCCCHHHHHhhhhh--------------hcccccCCChHHHHHHHhhhhccCCCCCccccchhhhhhccc
Q psy9003 245 YLVDECHKAGLFGTPEQLKYLVDE--------------CHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKA 310 (1276)
Q Consensus 245 ~l~~~~~~~~~~g~~~~~~~li~~--------------~h~~~~~~~ie~~~yli~e~~~~~~~~~~~~~t~~~~~~~~a 310 (1276)
...+-+|.++.+|-.++.++|.+- -|-+-..++.++++.|+++- -.+++.+..++|-+ |.|
T Consensus 53 ~~~~pl~~aa~~~~~~v~~~ll~~~a~v~~~~~~~~~plh~a~~~~~a~~v~~ll~~g-a~~~~~~~~~lTpL----h~a 127 (1143)
T KOG4177|consen 53 SGFTPLHIAAHYGNENVAELLLNRGAIVNATARNGITPLHVASKRGDAEMVKLLLCRG-AQIDARDRDGLTPL----HCA 127 (1143)
T ss_pred cccCHHHHHhhhhhhhhhhhhhccccccCcccccCccHHHHHHhhcchhHHHHHHhcc-CchhhcccCCCcch----hhh
Confidence 344455666666666666655532 34444458899999998854 33566666666666 667
Q ss_pred ccCCCHHHHHHHhhhhhccCCC--Ccccchhhhhc--cccccccCCChhhhHHhhhhhccccCCCChhhHHH--------
Q psy9003 311 GLFGTPEQLKYLVDECHKAGLF--GTPEQLKYLVD--ECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKY-------- 378 (1276)
Q Consensus 311 ~~~gsi~~l~~Lv~~~~~~~~~--~~~~~~~~~~~--~~~~a~~~g~ie~~~yLi~~~h~~~~~~~~e~~~~-------- 378 (1276)
+..|..+++.+|..++..++.. .....++.++- ....+..+...|.+ -+..-+||-.. +.++.
T Consensus 128 a~~g~~~~~~~ll~~~a~~~~k~~~g~t~l~~a~~~~~~~ll~~~~~~d~l-~~~~~~~~~~~----~~~~ll~~~~~~~ 202 (1143)
T KOG4177|consen 128 ARKGHVQVIELLLQHGAPINIKTKNGLSPLHMAAQVACARLLLEYKAPDYL-RLHVAAHCGHA----RVAKLLLDKKADP 202 (1143)
T ss_pred cccccHHHHHHHHHccCCCcccccCCCCchhhhcchhhhHHhhhcccchhh-hhhHHhhcchH----HHHhhhhcccCCc
Confidence 7789999999999988544422 22233333321 11111111122222 22444443331 00000
Q ss_pred ------HHhhhcccccCCChhHHHHHhhhcccccCCCChhhhhcccccchhccccCCHhHHHhhcccccccccCCChhhH
Q psy9003 379 ------LVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQL 452 (1276)
Q Consensus 379 ------~~~~~~~a~~~~~id~vkyLi~~~h~~~~~~~~~~~~~~vt~lh~a~~~~~~~~~~yli~~~~~~~~~~~~e~l 452 (1276)
.-|-.+.+.-.+.|+++.+|+--- -+.-+.+..++ |++|.|+..|+++++++|+-.+-|..+. ++-|
T Consensus 203 ~a~~~~~~tpl~~a~~~nri~~~eLll~~g-adv~a~d~~gl----~~lh~a~~~g~~~i~~~l~~~ga~~~~~-~vr~- 275 (1143)
T KOG4177|consen 203 NASALNGFTPLHIACKKNRIKVVELLLKHG-ADVSAKDESGL----TPLHVAAFMGHLDIVKLLLQHGASVNVS-TVRG- 275 (1143)
T ss_pred cccccCCCCchhhhccccccceeeeeeecc-CcCCcccccCc----cHHHHHHhccchhHHHHHHhcccccCcc-cccc-
Confidence 002222222244455554443111 13456666777 8888888888888888888777776654 3344
Q ss_pred HHHHHHHhHhccCCChhhHHHhh--------------hhhcccccCCChhhhhhhhhhhhhhccCCCHHHHHHHhhhhcc
Q psy9003 453 KYLVDECHKAGLFGTPEQLKYLV--------------DECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHK 518 (1276)
Q Consensus 453 ~~l~~~~~~~~~~~~~~~~~~~v--------------~~~~~a~~~~~~e~~~~lv~~~~~~~~~~~~~~~~~~~t~~~~ 518 (1276)
.+.+|.+++.+..|..++++ |..|++.-.|..++++++......++--.+ ...|..|.
T Consensus 276 ---~tplh~AA~~~~~e~~~~ll~~ga~~~~~~~~~kt~l~~a~~~g~~~i~~~~l~~~~~~~aar~-----~g~t~lHl 347 (1143)
T KOG4177|consen 276 ---ETPLHMAARAGQVEVCKLLLQNGADVLAKARDDQTPLHIASRLGHEEIVHLLLQAGATPNAART-----AGYTPLHL 347 (1143)
T ss_pred ---cCcchhhhccchhhhHhhhhccCcccccccccccChhhhhcccchHHHHHHHhhccCCccccCc-----CCcccccH
Confidence 45556666666666666663 344444444444444444333333332211 12666777
Q ss_pred cccCCCHHHHHHHHhhhhhcCCCCCcchhhhhhhhhhccccCCCHHHHHHHHHhhhhccCCCChhhhhhhhhhhcccccC
Q psy9003 519 AGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLF 598 (1276)
Q Consensus 519 a~~~g~~e~~~~lv~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 598 (1276)
+..+|..+.+.+|-+.+++..-... +.-+-++-|...|..+.+.+|-..+...|...-.- +|-.++|.-.
T Consensus 348 aa~~~~~~~~~~l~~~~~~~~~a~~-----k~~~pl~la~~~g~~~~v~Lll~~ga~~~~~gk~g-----vTplh~aa~~ 417 (1143)
T KOG4177|consen 348 AAKEGQVEVAGALLEHGAQRRQAEE-----KGFTPLHLAVKSGRVSVVELLLEAGADPNSAGKNG-----VTPLHVAAHY 417 (1143)
T ss_pred hhhhhhHHHHHHhhccccccCcccc-----cCCcchhhhcccCchhHHHhhhhccCCcccCCCCC-----cceeeehhhc
Confidence 7777777766666666555543222 44455555667777777777777777755333222 5666777777
Q ss_pred CCHHHHHHHHhhhhhccCCCChhhhhhhHHHhhhccCCCCHHHHHHHHHHHHhhcCCCChH--HHhhhhhhhhhcccCCC
Q psy9003 599 GTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPE--QLKYLVDECHKAGLFGT 676 (1276)
Q Consensus 599 ~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 676 (1276)
++.-.++++++.+++.|. ++++--++.|.|...|-..|...+.+- ++-+. ..+--++.+|-|.-.|+
T Consensus 418 ~~~~~v~l~l~~gA~~~~-----~~~lG~T~lhvaa~~g~~~~~~~~l~~------~g~~~n~~s~~G~T~Lhlaaq~Gh 486 (1143)
T KOG4177|consen 418 GNPRVVKLLLKRGASPNA-----KAKLGYTPLHVAAKKGRYLQIARLLLQ------YGADPNAVSKQGFTPLHLAAQEGH 486 (1143)
T ss_pred cCcceEEEEeccCCChhh-----HhhcCCChhhhhhhcccHhhhhhhHhh------cCCCcchhccccCcchhhhhccCC
Confidence 777777777776666543 334446666666666643333333321 11111 34555668888999999
Q ss_pred hhHHHHHHH--------------HHHhhccCCChhHHHhhHH--------------HHhhcccCCCHHHHHHHHHH----
Q psy9003 677 PEQLKYLVD--------------ECHKAGLFGTPEQLKYLVD--------------ECHKAGLFGTPEQLKYLVDE---- 724 (1276)
Q Consensus 677 ~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~---- 724 (1276)
.|-++.|++ .+|-+.--.|+..++-+++ .+|.|+.+|++..||+|++.
T Consensus 487 ~~~~~llle~~~~~~~~~~~~l~~lhla~~~~~v~~~~~l~~~ga~v~~~~~r~~TpLh~A~~~g~v~~VkfLLe~gAdv 566 (1143)
T KOG4177|consen 487 TEVVQLLLEGGANDNLDAKKGLTPLHLAADEDTVKVAKILLEHGANVDLRTGRGYTPLHVAVHYGNVDLVKFLLEHGADV 566 (1143)
T ss_pred chHHHHhhhcCCccCccchhccchhhhhhhhhhHHHHHHHhhcCCceehhcccccchHHHHHhcCCchHHHHhhhCCccc
Confidence 999999888 6677777788888888884 59999999999999999987
Q ss_pred ----------HHhccCCCCchhhhhhh
Q psy9003 725 ----------CHKAGLFGTPEQLKYLV 741 (1276)
Q Consensus 725 ----------~~~~~~~~~~~~~~~~~ 741 (1276)
+|.|+..|+-+.+-.||
T Consensus 567 ~ak~~~G~TPLH~Aa~~G~~~i~~LLl 593 (1143)
T KOG4177|consen 567 NAKDKLGYTPLHQAAQQGHNDIAELLL 593 (1143)
T ss_pred cccCCCCCChhhHHHHcChHHHHHHHH
Confidence 99999999999999887
|
|
| >cd02852 Isoamylase_N_term Isoamylase N-terminus domain | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.4e-11 Score=121.83 Aligned_cols=86 Identities=16% Similarity=0.121 Sum_probs=69.3
Q ss_pred cCeeecCceEEEEEccCCcEEEEEccCCCCc---c-ccccceecC---CCeEEEEcCCCCCCCcccCcccEEEEEEEE--
Q psy9003 774 QLKYLVDECHKAGLLCFMHVVCAAGDFNNWN---R-EEFAYKKLD---FGKWELVLPPNPDGSCKLTHLSQVKLVVRN-- 844 (1276)
Q Consensus 774 G~~y~~D~a~FalwAP~A~~VsLvGDFN~wd---~-~~~pM~r~~---~GVWsl~Ip~~~~G~~~i~hGs~YkYrV~~-- 844 (1276)
|+++..++++|+||||+|++|+|+. |++|+ + ..++|.+.+ +|+|++++++...| ..|+|+|.+
T Consensus 1 Ga~~~~~g~~F~vwAP~A~~V~L~l-f~~~~~~~~~~~~~m~~~~~~~~gvW~~~v~~~~~g-------~~Y~y~v~g~~ 72 (119)
T cd02852 1 GATIDAGGVNFSVYSSNATAVELLL-FDPGDGDEPALEIELDPSVNRTGDVWHVFVEGLKPG-------QLYGYRVDGPF 72 (119)
T ss_pred CCeEeCCCEEEEEECCCCCEEEEEE-EeCCCCCCceEEEeCcCcccccCCEEEEEECCCCCC-------CEEEEEECCCC
Confidence 6778889999999999999999986 66664 1 357887544 79999999987655 699999986
Q ss_pred --eCCeeee----ecCCcceEeecCCCCC
Q psy9003 845 --QHGHLLD----RLSPWATYVTEPPVVG 867 (1276)
Q Consensus 845 --~dG~~~~----~~DPYAkav~~~~~~s 867 (1276)
.+|.++. .+||||+++.++..++
T Consensus 73 ~p~~g~~~~~~~~~~DPYA~a~~~~~~~~ 101 (119)
T cd02852 73 EPEQGHRFDPSKVLLDPYAKAVSGDEYFG 101 (119)
T ss_pred CCCcccccCCCcEEECCCcCeEcCccccC
Confidence 4577766 9999999998776554
|
Isoamylase (aka glycogen 6-glucanohydrolase) is one of the starch-debranching enzymes that catalyzes the hydrolysis of alpha-1,6-glucosidic linkages specific in alpha-glucans such as amylopectin or glycogen. Isoamylase contains a bound calcium ion, but this is not in the same position as the conserved calcium ion that has been reported in other alpha-amylase family enzymes. The N-terminus of isoamylase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase. |
| >PHA03095 ankyrin-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=4.1e-11 Score=141.86 Aligned_cols=286 Identities=10% Similarity=-0.030 Sum_probs=184.3
Q ss_pred ccCCChHHHHHHHhhhhccCCCCCccccchhhhhhcccccCC---CHHHHHHHhhhhhccCCCCcccchhhhhccccccc
Q psy9003 273 GLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFG---TPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAG 349 (1276)
Q Consensus 273 ~~~~~ie~~~yli~e~~~~~~~~~~~~~t~~~~~~~~a~~~g---si~~l~~Lv~~~~~~~~~~~~~~~~~~~~~~~~a~ 349 (1276)
....++|+||+|++. ..+.-..+..|.|.+ |.|+..| ..+++++|++..-.++.. +. ...|+.|.|+
T Consensus 22 ~~~~~~~~v~~Ll~~-ga~vn~~~~~g~t~L----h~a~~~~~~~~~~iv~~Ll~~Gadin~~--~~---~g~TpLh~A~ 91 (471)
T PHA03095 22 ASNVTVEEVRRLLAA-GADVNFRGEYGKTPL----HLYLHYSSEKVKDIVRLLLEAGADVNAP--ER---CGFTPLHLYL 91 (471)
T ss_pred CCCCCHHHHHHHHHc-CCCcccCCCCCCCHH----HHHHHhcCCChHHHHHHHHHCCCCCCCC--CC---CCCCHHHHHH
Confidence 345789999999974 355554555555555 4455555 999999999876554432 22 3457788889
Q ss_pred cCC-ChhhhHHhhhhhccccC-CCChhhHHHHHhhhcccccCCChhHHHHHhhhcccccCCCChhhhhcccccchhcccc
Q psy9003 350 LFG-TPEQLKYLVDECHKAGL-FGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLF 427 (1276)
Q Consensus 350 ~~g-~ie~~~yLi~~~h~~~~-~~~~e~~~~~~~~~~~a~~~~~id~vkyLi~~~h~~~~~~~~~~~~~~vt~lh~a~~~ 427 (1276)
..| +.+++++|++..-.++. +.......+.... ..+++.+++++|+... .++-..+..+. ||||.|+..
T Consensus 92 ~~~~~~~iv~lLl~~ga~in~~~~~g~tpLh~a~~----~~~~~~~iv~~Ll~~g-ad~~~~d~~g~----tpL~~a~~~ 162 (471)
T PHA03095 92 YNATTLDVIKLLIKAGADVNAKDKVGRTPLHVYLS----GFNINPKVIRLLLRKG-ADVNALDLYGM----TPLAVLLKS 162 (471)
T ss_pred HcCCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHhh----CCcCCHHHHHHHHHcC-CCCCccCCCCC----CHHHHHHHc
Confidence 999 69999999987665553 2223333332221 1256899999999753 45556666777 999988754
Q ss_pred C--CHhHHHhhcccccccccCCChhhHHHHHHHHhHhccCCChhhHHHhhhhhcccccCCChhhhhhhhhhhhhhccCCC
Q psy9003 428 G--TPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGT 505 (1276)
Q Consensus 428 ~--~~~~~~yli~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~~~~~~~v~~~~~a~~~~~~e~~~~lv~~~~~~~~~~~ 505 (1276)
+ +.+++++|+..+...... +...-..|.-.++ ...+..+.+++|++.+.+.+....
T Consensus 163 ~~~~~~iv~~Ll~~g~~~~~~-d~~g~t~Lh~~~~---------------------~~~~~~~i~~~Ll~~g~~~~~~d~ 220 (471)
T PHA03095 163 RNANVELLRLLIDAGADVYAV-DDRFRSLLHHHLQ---------------------SFKPRARIVRELIRAGCDPAATDM 220 (471)
T ss_pred CCCCHHHHHHHHHcCCCCccc-CCCCCCHHHHHHH---------------------HCCCcHHHHHHHHHcCCCCcccCC
Confidence 4 678888888765433333 3222222211111 123455666666666666655443
Q ss_pred HHHHHHHhhhhcccccCCCH--HHHHHHHhhhhhcCCCCCcchhhhhhhhhhccccCCCHHHHHHHHHhhhhccCCCChh
Q psy9003 506 PEQLKYLVDECHKAGLFGTP--EQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPE 583 (1276)
Q Consensus 506 ~~~~~~~~t~~~~a~~~g~~--e~~~~lv~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~~ 583 (1276)
...|+.|.|...|+. +++++|+..+.++|.-+. ..-|..|.|...|+.+.+++|++.++++|+....-
T Consensus 221 -----~g~tpLh~Aa~~~~~~~~~v~~ll~~g~din~~d~-----~g~TpLh~A~~~~~~~~v~~LL~~gad~n~~~~~g 290 (471)
T PHA03095 221 -----LGNTPLHSMATGSSCKRSLVLPLLIAGISINARNR-----YGQTPLHYAAVFNNPRACRRLIALGADINAVSSDG 290 (471)
T ss_pred -----CCCCHHHHHHhcCCchHHHHHHHHHcCCCCCCcCC-----CCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCC
Confidence 346777777777765 577778777777764443 34455666668888888888888888888433322
Q ss_pred hhhhhhhhhcccccCCCHHHHHHHHhhhhhc
Q psy9003 584 QLKYLVDECHKAGLFGTPEQLKYLVDECHKA 614 (1276)
Q Consensus 584 ~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~ 614 (1276)
.|..+-|...|+.+.+++|+..+..+
T Consensus 291 -----~tpl~~A~~~~~~~~v~~LL~~~~~~ 316 (471)
T PHA03095 291 -----NTPLSLMVRNNNGRAVRAALAKNPSA 316 (471)
T ss_pred -----CCHHHHHHHhCCHHHHHHHHHhCCCH
Confidence 45566666888888888888776554
|
|
| >TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive | Back alignment and domain information |
|---|
Probab=99.23 E-value=4.7e-11 Score=153.89 Aligned_cols=96 Identities=20% Similarity=0.193 Sum_probs=74.5
Q ss_pred hccceEecCCcEEEEEEccCCceEEEEe-ecc-CCCc----ce------EEEEEccCcc------ccceEEEEEecCCC-
Q psy9003 64 KYGIHVQADNSVRCFEWAPSAQQLYLTG-NVS-LTPW----SI------MEEASLSSIK------LIQSIQYILTGVFG- 124 (1276)
Q Consensus 64 ~fGah~~~~gg~~f~~wAP~A~~v~l~g-dfn-~~~w----~m------~~~~~~~~~~------~g~~yky~i~~~~g- 124 (1276)
.+||+...+|+++|++|||+|++|.|++ |++ |... .| ||+++|++++ .|..|+|+|.+.+.
T Consensus 318 ~LGa~~~~~g~v~F~vWAP~A~~V~L~lyd~~~~~~~~~~~~m~~~~~GvW~v~v~~~~~G~~d~~G~~Y~Y~V~~~~~~ 397 (1111)
T TIGR02102 318 KLGAQLHEDGTVTLKLWSPSADHVSVVLYDKDDQDKVVGTVELKKGDRGVWEVQLTKENTGIDSLTGYYYHYEITRGGDK 397 (1111)
T ss_pred CCCCEEecCCCEEEEEECCCCCEEEEEEEeCCCCCCceeeEecccCCCCEEEEEECCcccCcccCCCceEEEEEECCCce
Confidence 5999998777799999999999999998 673 3221 15 9999999654 58999999987433
Q ss_pred ------------C-C---------Cccccccc--------------------------ccccccC--------------C
Q psy9003 125 ------------T-P---------EQLKYLVD--------------------------ECHKAGL--------------F 142 (1276)
Q Consensus 125 ------------r-p---------~~as~~~d--------------------------e~h~gs~--------------~ 142 (1276)
. . ...|+|+| |+|+++| -
T Consensus 398 ~~~~DPYA~al~~~n~~~~~~~~~~~ks~vvD~~~~~p~~~~~~~~~~~~~~~d~vIYElHVrdFt~d~~~~~~~~~~~G 477 (1111)
T TIGR02102 398 VLALDPYAKSLAAWNDATSDDQIKVAKAAFVDPSSLGPQELDFAKIENFKKREDAIIYEAHVRDFTSDPAIAGDLTAQFG 477 (1111)
T ss_pred EEEeChhheEEeccCcccccccCCCCceEEEcCcccCccccccccccccCCccceEEEEEechhhCcCCCCCcccccCCc
Confidence 1 1 13445544 9999975 3
Q ss_pred ChHHHHHHHHHHHHhcCc
Q psy9003 143 GTPEQLKYLVDECHKAGL 160 (1276)
Q Consensus 143 ~y~e~a~~li~y~~~~~y 160 (1276)
+|+.|++.| +|+|++|+
T Consensus 478 tf~gl~ekL-dYLkeLGV 494 (1111)
T TIGR02102 478 TFAAFVEKL-DYLQDLGV 494 (1111)
T ss_pred CHHHHHHhH-HHHHHcCC
Confidence 589999996 99999999
|
Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645). |
| >PHA02989 ankyrin repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.3e-10 Score=137.85 Aligned_cols=288 Identities=10% Similarity=-0.069 Sum_probs=174.4
Q ss_pred CChHHHHHHHhhhhccCCCCCccccchhhhhhcccccCCCHHHHHHHhhhhhccCCCC-cccchhhhhccccccccCCCh
Q psy9003 276 GTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFG-TPEQLKYLVDECHKAGLFGTP 354 (1276)
Q Consensus 276 ~~ie~~~yli~e~~~~~~~~~~~~~t~~~~~~~~a~~~gsi~~l~~Lv~~~~~~~~~~-~~~~~~~~~~~~~~a~~~g~i 354 (1276)
..+|+||+|++.. .|+-.. ..|.|.++..+. ...++++++++|++..-.++..+ ...-+..++.+.. ....|+.
T Consensus 14 ~~~~~v~~LL~~G-advN~~-~~g~t~l~~~~~--~~~~~~~iv~~Ll~~GAdvn~~~~~~tpL~~a~~~~~-~~~~~~~ 88 (494)
T PHA02989 14 VDKNALEFLLRTG-FDVNEE-YRGNSILLLYLK--RKDVKIKIVKLLIDNGADVNYKGYIETPLCAVLRNRE-ITSNKIK 88 (494)
T ss_pred CcHHHHHHHHHcC-CCcccc-cCCCCHHHHHHh--cCCCChHHHHHHHHcCCCccCCCCCCCcHHHHHhccC-cchhhHH
Confidence 5689999999742 343222 345555533221 12358999999998765444221 1222333322211 1124678
Q ss_pred hhhHHhhhhhccccC-CCChhhHHHHHhhhcccccCCChhHHHHHhhhccccc-CCCChhhhhcccccchhccc--cCCH
Q psy9003 355 EQLKYLVDECHKAGL-FGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAG-LFGTPEQLKYLVDECHKAGL--FGTP 430 (1276)
Q Consensus 355 e~~~yLi~~~h~~~~-~~~~e~~~~~~~~~~~a~~~~~id~vkyLi~~~h~~~-~~~~~~~~~~~vt~lh~a~~--~~~~ 430 (1276)
|+|++|++-.-.++. +.....-.+.... +...|+.|+|++|+... .++ -..+..|. ||||.|+. .++.
T Consensus 89 ~iv~~Ll~~Gadin~~d~~g~tpL~~a~~---~~~~~~~eiv~~Ll~~G-adin~~~d~~g~----tpLh~a~~~~~~~~ 160 (494)
T PHA02989 89 KIVKLLLKFGADINLKTFNGVSPIVCFIY---NSNINNCDMLRFLLSKG-INVNDVKNSRGY----NLLHMYLESFSVKK 160 (494)
T ss_pred HHHHHHHHCCCCCCCCCCCCCcHHHHHHH---hcccCcHHHHHHHHHCC-CCcccccCCCCC----CHHHHHHHhccCCH
Confidence 999999987766553 2222222221110 11137899999999753 454 45566777 99999863 4688
Q ss_pred hHHHhhcccccccccCCChhhHHHHHHHHhHhccCCChhhHHHhhhhhcccc----cCCChhhhhhhhhhhhhhccCCC-
Q psy9003 431 EQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAG----LFGTPEQLKYLVDECHKAGLFGT- 505 (1276)
Q Consensus 431 ~~~~yli~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~~~~~~~v~~~~~a~----~~~~~e~~~~lv~~~~~~~~~~~- 505 (1276)
++|++|+..+.......+..+ .|+.|.+. ..+++|.+++|++.+.++|....
T Consensus 161 ~iv~~Ll~~Gadi~~~~~~~g-----------------------~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~vn~~~~~ 217 (494)
T PHA02989 161 DVIKILLSFGVNLFEKTSLYG-----------------------LTPMNIYLRNDIDVISIKVIKYLIKKGVNIETNNNG 217 (494)
T ss_pred HHHHHHHHcCCCccccccccC-----------------------CChHHHHHhcccccccHHHHHHHHhCCCCccccCCc
Confidence 999999976632211122222 23333332 34578888888888888876552
Q ss_pred -HHHHHHHhhhhcccccCCCHHHHHHHHhhhhhcCCCCCcchhhhhhhhhhccccCCCHHHHHHHHHhhhhccCCCChhh
Q psy9003 506 -PEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQ 584 (1276)
Q Consensus 506 -~~~~~~~~t~~~~a~~~g~~e~~~~lv~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~ 584 (1276)
...+.+.+ ...++...+.++++++|.. .+++|..+. +.-|..+.|...|+.|.+++|++.++++|......
T Consensus 218 ~~t~l~~~~-~~~~~~~~~~~~il~~l~~-~advn~~d~-----~G~TpL~~Aa~~~~~~~v~~LL~~Gadin~~d~~G- 289 (494)
T PHA02989 218 SESVLESFL-DNNKILSKKEFKVLNFILK-YIKINKKDK-----KGFNPLLISAKVDNYEAFNYLLKLGDDIYNVSKDG- 289 (494)
T ss_pred cccHHHHHH-HhchhhcccchHHHHHHHh-CCCCCCCCC-----CCCCHHHHHHHhcCHHHHHHHHHcCCCccccCCCC-
Confidence 22233222 2234556678899998765 456665444 45666677778899999999999999998443322
Q ss_pred hhhhhhhhcccccCCCHHHHHHHHhhh
Q psy9003 585 LKYLVDECHKAGLFGTPEQLKYLVDEC 611 (1276)
Q Consensus 585 ~~~~~~~~~~~~~~~~~e~~~~l~~~~ 611 (1276)
.|..+.|...|+.+.+++|++..
T Consensus 290 ----~TpL~~A~~~~~~~iv~~LL~~~ 312 (494)
T PHA02989 290 ----DTVLTYAIKHGNIDMLNRILQLK 312 (494)
T ss_pred ----CCHHHHHHHcCCHHHHHHHHhcC
Confidence 45556666889999999988753
|
|
| >cd02855 Glycogen_branching_enzyme_N_term Glycogen branching enzyme N-terminus domain | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.7e-10 Score=110.80 Aligned_cols=79 Identities=25% Similarity=0.381 Sum_probs=66.3
Q ss_pred CceEEEEEccCCcEEEEEccCCCCccccccceecC-CCeEEEEcCCCCCCCcccCcccEEEEEEEEeCCeeeeecCCcce
Q psy9003 780 DECHKAGLLCFMHVVCAAGDFNNWNREEFAYKKLD-FGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHGHLLDRLSPWAT 858 (1276)
Q Consensus 780 D~a~FalwAP~A~~VsLvGDFN~wd~~~~pM~r~~-~GVWsl~Ip~~~~G~~~i~hGs~YkYrV~~~dG~~~~~~DPYAk 858 (1276)
++++|++|+|.|++|+|+++|++|....++|.+.+ .|+|++.+++... |..|+|++...+|.+....|||++
T Consensus 21 ~~~~frv~aP~A~~V~l~~~~~~~~~~~~~m~~~~~~G~w~~~v~~~~~-------~~~Y~~~v~~~~g~~~~~~DPYa~ 93 (106)
T cd02855 21 SGVRFAVWAPNARRVSVVGDFNGWDGRRHPMRRRGDSGVWELFIPGLGE-------GELYKYEILGADGHLPLKADPYAF 93 (106)
T ss_pred CCEEEEEECCCCCEEEEEEECCCCCCcceecEECCCCCEEEEEECCCCC-------CCEEEEEEECCCCCEEEeeCCCce
Confidence 56799999999999999998999976678998866 9999999986544 458999998655677789999999
Q ss_pred EeecCCC
Q psy9003 859 YVTEPPV 865 (1276)
Q Consensus 859 av~~~~~ 865 (1276)
.+...++
T Consensus 94 ~~~~~~~ 100 (106)
T cd02855 94 YSELRPG 100 (106)
T ss_pred eeEeCCC
Confidence 9887654
|
Glycogen branching enzyme (AKA 1,4 alpha glucan branching enzyme) catalyzes the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends glycogen is more reactive to synthesis and digestion as well as being more soluble. The N-terminus of the 1,4 alpha glucan branching enzyme may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitina |
| >PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=8.4e-11 Score=154.29 Aligned_cols=59 Identities=7% Similarity=-0.041 Sum_probs=48.8
Q ss_pred hhccceEecCCcEEEEEEccCCceEEEEeecc-CCCcc-----e------EEEEEccCccccceEEEEEecCC
Q psy9003 63 NKYGIHVQADNSVRCFEWAPSAQQLYLTGNVS-LTPWS-----I------MEEASLSSIKLIQSIQYILTGVF 123 (1276)
Q Consensus 63 ~~fGah~~~~gg~~f~~wAP~A~~v~l~gdfn-~~~w~-----m------~~~~~~~~~~~g~~yky~i~~~~ 123 (1276)
..|||+... +||+|++|||+|++|.|+ .|+ |+.-. | ||++||+++++|+.|+|+|.++.
T Consensus 14 ~plGA~~~~-~gv~F~v~ap~A~~V~L~-lf~~~~~~~~~~~~l~~~~g~vW~~~i~~~~~g~~Ygyrv~g~~ 84 (1221)
T PRK14510 14 EPLGAVPDG-GGVNLALFSGAAERVEFC-LFDLWGVREEARIKLPGRTGDVWHGFIVGVGPGARYGNRQEGPG 84 (1221)
T ss_pred CCCceEEEC-CeEEEEEECCCCCEEEEE-EEECCCCCeeEEEECCCCcCCEEEEEEccCCCCcEEEEEeccCC
Confidence 369999864 469999999999999998 894 43221 3 99999999999999999998744
|
|
| >cd02855 Glycogen_branching_enzyme_N_term Glycogen branching enzyme N-terminus domain | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.4e-10 Score=111.28 Aligned_cols=75 Identities=23% Similarity=0.426 Sum_probs=64.0
Q ss_pred HhhHHHhhccceEecC---CcEEEEEEccCCceEEEEeeccCCCcc-----e-------EEEEEccCccccceEEEEEec
Q psy9003 57 KFTTSYNKYGIHVQAD---NSVRCFEWAPSAQQLYLTGNVSLTPWS-----I-------MEEASLSSIKLIQSIQYILTG 121 (1276)
Q Consensus 57 ~Fs~~y~~fGah~~~~---gg~~f~~wAP~A~~v~l~gdfn~~~w~-----m-------~~~~~~~~~~~g~~yky~i~~ 121 (1276)
+.++.|+.||+|+..+ +|++||+|||+|++|.|+|+| ++|+ | +|++++|+.+.|..|+|+|..
T Consensus 2 ~~~~p~~~lG~~~~~~~~~~~~~frv~aP~A~~V~l~~~~--~~~~~~~~~m~~~~~~G~w~~~v~~~~~~~~Y~~~v~~ 79 (106)
T cd02855 2 THERLYEKLGAHPTEVDGVSGVRFAVWAPNARRVSVVGDF--NGWDGRRHPMRRRGDSGVWELFIPGLGEGELYKYEILG 79 (106)
T ss_pred cchhHHHhcCCEEcccCCcCCEEEEEECCCCCEEEEEEEC--CCCCCcceecEECCCCCEEEEEECCCCCCCEEEEEEEC
Confidence 3567899999997765 789999999999999999999 5553 5 999999999999999999987
Q ss_pred CCC---------------CCCcccccc
Q psy9003 122 VFG---------------TPEQLKYLV 133 (1276)
Q Consensus 122 ~~g---------------rp~~as~~~ 133 (1276)
.+| .|++|||++
T Consensus 80 ~~g~~~~~~DPYa~~~~~~~~~~~~~~ 106 (106)
T cd02855 80 ADGHLPLKADPYAFYSELRPGTASIVA 106 (106)
T ss_pred CCCCEEEeeCCCceeeEeCCCCeEEeC
Confidence 654 788888864
|
Glycogen branching enzyme (AKA 1,4 alpha glucan branching enzyme) catalyzes the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends glycogen is more reactive to synthesis and digestion as well as being more soluble. The N-terminus of the 1,4 alpha glucan branching enzyme may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitina |
| >PHA02798 ankyrin-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=2.1e-10 Score=137.97 Aligned_cols=290 Identities=9% Similarity=-0.028 Sum_probs=176.9
Q ss_pred ChHHHHHHHhhhhccCCCCCccccchhhhhhcccccCCCHHHHHHHhhhhhccCCCCcccchhhhhccccccc-----cC
Q psy9003 277 TPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAG-----LF 351 (1276)
Q Consensus 277 ~ie~~~yli~e~~~~~~~~~~~~~t~~~~~~~~a~~~gsi~~l~~Lv~~~~~~~~~~~~~~~~~~~~~~~~a~-----~~ 351 (1276)
.++.||.|++ +|+|-.. ..+.|.....++ ...+++|++++|+++.-.++ ..+.-. -|+.+.++ ..
T Consensus 17 ~~~~v~~ll~--~~~~~~~-~~~~~~~~~yl~--~~~~~~~iv~~Ll~~Gadvn--~~d~~g---~TpL~~~~~n~~~~~ 86 (489)
T PHA02798 17 KLSTVKLLIK--SCNPNEI-VNEYSIFQKYLQ--RDSPSTDIVKLFINLGANVN--GLDNEY---STPLCTILSNIKDYK 86 (489)
T ss_pred cHHHHHHHHh--cCChhhh-cccchHHHHHHh--CCCCCHHHHHHHHHCCCCCC--CCCCCC---CChHHHHHHhHHhHH
Confidence 4889999997 4665322 123343322222 23568999999998765444 222211 12223322 23
Q ss_pred CChhhhHHhhhhhccccC-CCChhhHHHHHhhhcccccCCChhHHHHHhhhcccccCCCChhhhhcccccchhccccCC-
Q psy9003 352 GTPEQLKYLVDECHKAGL-FGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGT- 429 (1276)
Q Consensus 352 g~ie~~~yLi~~~h~~~~-~~~~e~~~~~~~~~~~a~~~~~id~vkyLi~~~h~~~~~~~~~~~~~~vt~lh~a~~~~~- 429 (1276)
+++|++++|++-.-.++. +..+.+-.+.+...+. .++.|++++|+.. ..++...+.++. ||||.|+..++
T Consensus 87 ~~~~iv~~Ll~~GadiN~~d~~G~TpLh~a~~~~~---~~~~~iv~~Ll~~-Gadvn~~d~~g~----tpL~~a~~~~~~ 158 (489)
T PHA02798 87 HMLDIVKILIENGADINKKNSDGETPLYCLLSNGY---INNLEILLFMIEN-GADTTLLDKDGF----TMLQVYLQSNHH 158 (489)
T ss_pred hHHHHHHHHHHCCCCCCCCCCCcCcHHHHHHHcCC---cChHHHHHHHHHc-CCCccccCCCCC----cHHHHHHHcCCc
Confidence 679999999986654442 3333333332222111 2589999999974 456777788888 99999998887
Q ss_pred --HhHHHhhcccccccccCCChhhHHHHHHHHhHhccCCChhhHHHhhhhhcccccCCChhhhhhhhhhhhhhccCC---
Q psy9003 430 --PEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFG--- 504 (1276)
Q Consensus 430 --~~~~~yli~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~~~~~~~v~~~~~a~~~~~~e~~~~lv~~~~~~~~~~--- 504 (1276)
.++|++|+..+--...+.+.++...|..... ++...++.+.+++|++.++.++...
T Consensus 159 ~~~~vv~~Ll~~gadin~~~~~~~~t~Lh~~~~-------------------~~~~~~~~~ivk~Li~~Ga~i~~~~~~~ 219 (489)
T PHA02798 159 IDIEIIKLLLEKGVDINTHNNKEKYDTLHCYFK-------------------YNIDRIDADILKLFVDNGFIINKENKSH 219 (489)
T ss_pred chHHHHHHHHHhCCCcccccCcCCCcHHHHHHH-------------------hccccCCHHHHHHHHHCCCCcccCCccc
Confidence 8999999876532222222222111111111 1123456777777777777766532
Q ss_pred CHHHHHHHhhhhcccccCCCHHHHHHHHhhhhhcCCCCCcchhhhhhhhhhccccCCCHHHHHHHHHhhhhccCCCChhh
Q psy9003 505 TPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQ 584 (1276)
Q Consensus 505 ~~~~~~~~~t~~~~a~~~g~~e~~~~lv~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~ 584 (1276)
...+.+++.. ...+...++.+++++|.. ..++|.-+. +.-|-.+.|...|+.+.+++|++.++++|.....-
T Consensus 220 ~~~~~~~l~~-l~~~~~~~~~~i~~~l~~-~~dvN~~d~-----~G~TPL~~A~~~~~~~~v~~LL~~GAdin~~d~~G- 291 (489)
T PHA02798 220 KKKFMEYLNS-LLYDNKRFKKNILDFIFS-YIDINQVDE-----LGFNPLYYSVSHNNRKIFEYLLQLGGDINIITELG- 291 (489)
T ss_pred cchHHHHHHH-HHhhcccchHHHHHHHHh-cCCCCCcCc-----CCccHHHHHHHcCcHHHHHHHHHcCCcccccCCCC-
Confidence 2233333322 223445678888888765 345554333 55666677778999999999999999999433322
Q ss_pred hhhhhhhhcccccCCCHHHHHHHHhhhhhcc
Q psy9003 585 LKYLVDECHKAGLFGTPEQLKYLVDECHKAG 615 (1276)
Q Consensus 585 ~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~ 615 (1276)
-|..+.|...|+.+.+++|++.+.+++
T Consensus 292 ----~TpL~~A~~~~~~~iv~~lL~~~~~~~ 318 (489)
T PHA02798 292 ----NTCLFTAFENESKFIFNSILNKKPNKN 318 (489)
T ss_pred ----CcHHHHHHHcCcHHHHHHHHccCCCHH
Confidence 466667778999999999998877775
|
|
| >KOG2212|consensus | Back alignment and domain information |
|---|
Probab=99.12 E-value=7.5e-10 Score=124.53 Aligned_cols=102 Identities=23% Similarity=0.376 Sum_probs=75.3
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCEEEEEEeccccCCcccCC-------C------cCCCCCCC--cccccCC----CCCCC
Q psy9003 1030 AGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDG-------L------NEFDGTQA--CFFHDGP----RGTHP 1090 (1276)
Q Consensus 1030 D~~~Gt~eEfK~LV~alHk~GI~VILDvV~NHt~~~~~~~-------~------~~f~g~~~--~Yy~~~~----~g~~~ 1090 (1276)
+.|-|..+||+.||..|.+-|+|++.|+|+||+......+ . .+|.|..- .-|..+. .....
T Consensus 88 ~tRSGNE~eF~dMV~RCN~VGVRiyVDvv~NHM~g~~~~G~~vGt~Gs~~~p~s~SfPGVPYs~~DFn~~kc~~~~~~i~ 167 (504)
T KOG2212|consen 88 CTRSGNEDEFRDMVTRCNNVGVRIYVDAVINHMCGNAVSGGTVGTCGSYFNPGSRSFPGVPYSGWDFNDGKCKTGSGDIE 167 (504)
T ss_pred eccCCCHHHHHHHHHHhhccceEEEehhhhhhhccccccCCccccccCccCCCCCCCCCCCcccccCCCcccCCCccccc
Confidence 3778999999999999999999999999999998532111 1 22333210 0122211 12244
Q ss_pred CCCC------------cCCCCCcHHHHHHHHHHHHHHHHhCCCcEEccCCcccc
Q psy9003 1091 LWDS------------RLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSM 1132 (1276)
Q Consensus 1091 ~W~g------------~~LN~~np~Vr~~Iidsl~~Wv~eygVDGFRfD~a~~L 1132 (1276)
+|+. .+||-.+.-||..|++-|.+.++ .||-|||.|++++|
T Consensus 168 ~~Nda~~V~~C~LVGL~DL~Q~s~~Vr~Kive~L~hLid-lGVAGFRvDAsKHM 220 (504)
T KOG2212|consen 168 NYNDATQVRDCRLVGLLDLAQGSDYVRSKIAEYLNHLID-IGVAGFRVDASKHM 220 (504)
T ss_pred cccchhhhhcceEeecchhhhcchHHHHHHHHHHHHHHH-hccceeeechhhcc
Confidence 5542 56888899999999999999998 79999999999999
|
|
| >PF02922 CBM_48: Carbohydrate-binding module 48 (Isoamylase N-terminal domain); InterPro: IPR004193 O-Glycosyl hydrolases 3 | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.9e-10 Score=106.61 Aligned_cols=58 Identities=24% Similarity=0.391 Sum_probs=51.0
Q ss_pred ccceEecC-CcEEEEEEccCCceEEEEeeccCCC-cc-----e-------EEEEEcc-Ccccc-ceEEEEEecCCC
Q psy9003 65 YGIHVQAD-NSVRCFEWAPSAQQLYLTGNVSLTP-WS-----I-------MEEASLS-SIKLI-QSIQYILTGVFG 124 (1276)
Q Consensus 65 fGah~~~~-gg~~f~~wAP~A~~v~l~gdfn~~~-w~-----m-------~~~~~~~-~~~~g-~~yky~i~~~~g 124 (1276)
||||+.++ |+++|++|||+|++|.|+|+| ++ |. | +|+++++ .+++| ..|+|+|.+.+|
T Consensus 2 lG~~~~~~~~~~~F~vwaP~A~~V~l~~~~--~~~~~~~~~~m~~~~~~G~w~~~~~~~~~~g~~~Y~y~i~~~~g 75 (85)
T PF02922_consen 2 LGAHYTEDGGGVTFRVWAPNAKSVELVLYF--NGSWPAEEYPMTRKDDDGVWEVTVPGDLPPGGYYYKYRIDGDDG 75 (85)
T ss_dssp SEEEEESSCTEEEEEEE-TTESEEEEEEET--TTSSEEEEEEEEEECTTTEEEEEEEGCGTTTT-EEEEEEEETTT
T ss_pred cCcEEECCCCEEEEEEECCCCCEEEEEEEe--eecCCCceEEeeecCCCCEEEEEEcCCcCCCCEEEEEEEEeCCC
Confidence 89999996 899999999999999999999 66 76 5 9999999 78887 699999998876
|
2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. This domain is found in a range of enzymes that act on branched substrates ie. isoamylase, pullulanase and branching enzyme. Isoamylase hydrolyses 1,6-alpha-D-glucosidic branch linkages in glycogen, amylopectin and dextrin; 1,4-alpha-glucan branching enzyme functions in the formation of 1,6-glucosidic linkages of glycogen; and pullulanase is a starch-debranching enzyme.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BHZ_A 2BY2_A 2BY3_A 2BXY_A 2BY1_A 2BHY_A 2BHU_A 2BXZ_A 2BY0_A 2FHB_A .... |
| >KOG4412|consensus | Back alignment and domain information |
|---|
Probab=99.01 E-value=3.5e-10 Score=118.45 Aligned_cols=162 Identities=19% Similarity=0.112 Sum_probs=139.7
Q ss_pred hccccccccCCChhhhHHhhhhhccccCCCChhhHHHHHhhhcccccCCChhHHHHHhhhcccccCCCChhhhhcccccc
Q psy9003 342 VDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDEC 421 (1276)
Q Consensus 342 ~~~~~~a~~~g~ie~~~yLi~~~h~~~~~~~~e~~~~~~~~~~~a~~~~~id~vkyLi~~~h~~~~~~~~~~~~~~vt~l 421 (1276)
-++.|+||-.||-||+++|.-... ++.+. -+++|+ |||
T Consensus 39 Rt~LHwa~S~g~~eiv~fLlsq~n-v~~dd-------------------------------------kDdaGW----tPl 76 (226)
T KOG4412|consen 39 RTPLHWACSFGHVEIVYFLLSQPN-VKPDD-------------------------------------KDDAGW----TPL 76 (226)
T ss_pred CceeeeeeecCchhHHHHHHhcCC-CCCCC-------------------------------------ccccCC----chh
Confidence 377888888888888888865111 11221 256788 999
Q ss_pred hhccccCCHhHHHhhcccccccccCCChhhHHHHHHHHhHhccCCChhhHHHhhhhhcccccCCChhhhhhhhhhhhhhc
Q psy9003 422 HKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAG 501 (1276)
Q Consensus 422 h~a~~~~~~~~~~yli~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~~~~~~~v~~~~~a~~~~~~e~~~~lv~~~~~~~ 501 (1276)
|.|+..|..+|||-|++-+.-++.++|+.. +|..|.|..-|-.|...+|++.++.|+
T Consensus 77 hia~s~g~~evVk~Ll~r~~advna~tn~G-----------------------~T~LHyAagK~r~eIaqlLle~ga~i~ 133 (226)
T KOG4412|consen 77 HIAASNGNDEVVKELLNRSGADVNATTNGG-----------------------QTCLHYAAGKGRLEIAQLLLEKGALIR 133 (226)
T ss_pred hhhhhcCcHHHHHHHhcCCCCCcceecCCC-----------------------cceehhhhcCChhhHHHHHHhcCCCCc
Confidence 999999999999999999988888877666 899999999999999999999999999
Q ss_pred cCCCHHHHHHHhhhhcccccCCCHHHHHHHHhhhhhcCCCCCcchhhhhhhhhhccccCCCHHHHHHHHHhhhhccC
Q psy9003 502 LFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGL 578 (1276)
Q Consensus 502 ~~~~~~~~~~~~t~~~~a~~~g~~e~~~~lv~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~ 578 (1276)
.|+. +-.|++|.|..-|++++++||++.++++|..++ |.-|-.+-|+..|-.+...+||..++++-+
T Consensus 134 ~kD~-----~~qtplHRAAavGklkvie~Li~~~a~~n~qDk-----~G~TpL~~al~e~~~d~a~lLV~~gAd~~~ 200 (226)
T KOG4412|consen 134 IKDK-----QGQTPLHRAAAVGKLKVIEYLISQGAPLNTQDK-----YGFTPLHHALAEGHPDVAVLLVRAGADTDR 200 (226)
T ss_pred cccc-----ccCchhHHHHhccchhhHHHHHhcCCCCCcccc-----cCccHHHHHHhccCchHHHHHHHhccceee
Confidence 9886 668999999999999999999999999998888 888888889999999999999999999983
|
|
| >PHA02798 ankyrin-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=9.1e-10 Score=132.53 Aligned_cols=288 Identities=8% Similarity=-0.051 Sum_probs=167.9
Q ss_pred CCCHHHHHHHhhhhhccCCCCcccchhhhhccccccccCCChhhhHHhhhhhccccC-CCChhhHHHHH-hhhcccccCC
Q psy9003 313 FGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGL-FGTPEQLKYLV-DECHKAGLFG 390 (1276)
Q Consensus 313 ~gsi~~l~~Lv~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~ie~~~yLi~~~h~~~~-~~~~e~~~~~~-~~~~~a~~~~ 390 (1276)
.-.++.|++|++.+ ++.... .... ......+...+++|+|++|++..-.++. .....+-.+.+ .+ .+...+
T Consensus 15 ~~~~~~v~~ll~~~--~~~~~~-~~~~--~~~~yl~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpL~~~~~n--~~~~~~ 87 (489)
T PHA02798 15 NVKLSTVKLLIKSC--NPNEIV-NEYS--IFQKYLQRDSPSTDIVKLFINLGANVNGLDNEYSTPLCTILSN--IKDYKH 87 (489)
T ss_pred cccHHHHHHHHhcC--Chhhhc-ccch--HHHHHHhCCCCCHHHHHHHHHCCCCCCCCCCCCCChHHHHHHh--HHhHHh
Confidence 45678888888653 221111 0000 1111223446688889999876554442 22222222211 11 011136
Q ss_pred ChhHHHHHhhhcccccCCCChhhhhcccccchhccccC---CHhHHHhhcccccccccCCChhhHHHHHHHHhHhccCCC
Q psy9003 391 TPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFG---TPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGT 467 (1276)
Q Consensus 391 ~id~vkyLi~~~h~~~~~~~~~~~~~~vt~lh~a~~~~---~~~~~~yli~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~ 467 (1276)
++|++++|+.. .++.-..+.+|. ||||.|+..+ +.+++++|+..+-. ++..+.
T Consensus 88 ~~~iv~~Ll~~-GadiN~~d~~G~----TpLh~a~~~~~~~~~~iv~~Ll~~Gad-------------------vn~~d~ 143 (489)
T PHA02798 88 MLDIVKILIEN-GADINKKNSDGE----TPLYCLLSNGYINNLEILLFMIENGAD-------------------TTLLDK 143 (489)
T ss_pred HHHHHHHHHHC-CCCCCCCCCCcC----cHHHHHHHcCCcChHHHHHHHHHcCCC-------------------ccccCC
Confidence 78899999863 455555666777 8999888654 56777777754322 221122
Q ss_pred hhhHHHhhhhhcccccCCC---hhhhhhhhhhhhhhccCCCHHHHHHHhhhhcccccCCCHHHHHHHHhhhhhcCCCCCc
Q psy9003 468 PEQLKYLVDECHKAGLFGT---PEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTP 544 (1276)
Q Consensus 468 ~~~~~~~v~~~~~a~~~~~---~e~~~~lv~~~~~~~~~~~~~~~~~~~t~~~~a~~~g~~e~~~~lv~~~~~~~~~~t~ 544 (1276)
.. .|..|.|...+. .|.+++|++.+.++|.+.+.+..-.+.....++...++++++++|++.++.++..+..
T Consensus 144 ~g-----~tpL~~a~~~~~~~~~~vv~~Ll~~gadin~~~~~~~~t~Lh~~~~~~~~~~~~~ivk~Li~~Ga~i~~~~~~ 218 (489)
T PHA02798 144 DG-----FTMLQVYLQSNHHIDIEIIKLLLEKGVDINTHNNKEKYDTLHCYFKYNIDRIDADILKLFVDNGFIINKENKS 218 (489)
T ss_pred CC-----CcHHHHHHHcCCcchHHHHHHHHHhCCCcccccCcCCCcHHHHHHHhccccCCHHHHHHHHHCCCCcccCCcc
Confidence 22 466677776665 8888888888888876542111001111222334567899999999988887743322
Q ss_pred c--hhhhhhhhhhccccCCCHHHHHHHHHhhhhccCCCChhhhhhhhhhhcccccCCCHHHHHHHHhhhhhccCCCChhh
Q psy9003 545 E--QLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQ 622 (1276)
Q Consensus 545 ~--~l~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~ 622 (1276)
. .+..-..+...+...++.+.+.+|.. ++++| ..+. ..-|..+.|..+|+.+.+++|++.++++|..-...
T Consensus 219 ~~~~~~~~l~~l~~~~~~~~~~i~~~l~~-~~dvN--~~d~---~G~TPL~~A~~~~~~~~v~~LL~~GAdin~~d~~G- 291 (489)
T PHA02798 219 HKKKFMEYLNSLLYDNKRFKKNILDFIFS-YIDIN--QVDE---LGFNPLYYSVSHNNRKIFEYLLQLGGDINIITELG- 291 (489)
T ss_pred ccchHHHHHHHHHhhcccchHHHHHHHHh-cCCCC--CcCc---CCccHHHHHHHcCcHHHHHHHHHcCCcccccCCCC-
Confidence 1 22211222233445577777777654 45555 2222 23455566668899999999999999988765544
Q ss_pred hhhhHHHhhhccCCCCHHHHHHHHH
Q psy9003 623 LKYLVDECHKAGLFGTPEQLKYLVD 647 (1276)
Q Consensus 623 ~~~~~~~~~~~~~~~~~~~~~~~~~ 647 (1276)
-++.+.|...++.+.++.|++
T Consensus 292 ----~TpL~~A~~~~~~~iv~~lL~ 312 (489)
T PHA02798 292 ----NTCLFTAFENESKFIFNSILN 312 (489)
T ss_pred ----CcHHHHHHHcCcHHHHHHHHc
Confidence 567777777888888888874
|
|
| >COG3280 TreY Maltooligosyl trehalose synthase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.00 E-value=2.5e-09 Score=129.79 Aligned_cols=80 Identities=21% Similarity=0.271 Sum_probs=66.3
Q ss_pred cHHHHHHhhhhHHHHcCCCCCccceeecccccccccccccceeeccCccccccccccccCCCcccCCCcccccccccccc
Q psy9003 914 SYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAESHDQALVGDKTIAFWLMDKEM 993 (1276)
Q Consensus 914 tf~gl~ek~LdyLK~LGVna~d~wV~LmP~f~~eew~~~~pi~~l~~~Pi~E~~i~~~~S~~~~~WGYdp~nyf~~d~~~ 993 (1276)
||..... .||||++|||.| +++.|+| . ...|| .+|||++|+.
T Consensus 17 tF~~A~~-~l~yl~~LGISh----LY~SPIf--------------------t---A~pGS----tHGYDVvD~t------ 58 (889)
T COG3280 17 TFADARA-LLDYLADLGISH----LYLSPIF--------------------T---ARPGS----THGYDVVDPT------ 58 (889)
T ss_pred CHHHHHH-hhHHHHhcCchh----eeccchh--------------------h---cCCCC----CCCccCCCcc------
Confidence 6777776 599999999999 9999444 2 11233 5788876665
Q ss_pred ccccCCCCCCcccccccccccCCCCCccccccccccCCCCCCHHHHHHHHHHHHHcCCEEEEEEeccccCCc
Q psy9003 994 YTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKN 1065 (1276)
Q Consensus 994 y~~~S~~~Dp~~~~dap~~~yas~s~hkYt~D~~~ID~~~Gt~eEfK~LV~alHk~GI~VILDvV~NHt~~~ 1065 (1276)
+|+|.+|+.+.|.+||.++|.+||++|+|+|+||++..
T Consensus 59 ----------------------------------~InPeLGG~egl~rLvaalk~~GlGlI~DIVPNHMav~ 96 (889)
T COG3280 59 ----------------------------------EINPELGGEEGLERLVAALKSRGLGLIVDIVPNHMAVG 96 (889)
T ss_pred ----------------------------------ccChhhcChHHHHHHHHHHHhcCCceEEEecccchhcc
Confidence 45699999999999999999999999999999999877
|
|
| >PLN02877 alpha-amylase/limit dextrinase | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.7e-09 Score=137.53 Aligned_cols=55 Identities=20% Similarity=0.175 Sum_probs=46.4
Q ss_pred hccceEecCCcEEEEEEccCCceEEEEeecc-CCCcc------e-----EEEEEccCccccceEEEEEe
Q psy9003 64 KYGIHVQADNSVRCFEWAPSAQQLYLTGNVS-LTPWS------I-----MEEASLSSIKLIQSIQYILT 120 (1276)
Q Consensus 64 ~fGah~~~~gg~~f~~wAP~A~~v~l~gdfn-~~~w~------m-----~~~~~~~~~~~g~~yky~i~ 120 (1276)
.|||+...+ |++|++|||.|++|.|+. |+ ++.+. | ||++++++...|+.|+|+|.
T Consensus 214 ~LGA~~~~~-g~~F~VWAPtA~~V~L~l-yd~~~~~~~~~~~~m~~~~GVWsv~v~~~~~G~~Y~Y~V~ 280 (970)
T PLN02877 214 PLGAHFSKD-AVSLYLWAPTAQAVSLCL-YDDPRGKEPLEIVQLKESNGVWSVEGPKSWEGCYYVYEVS 280 (970)
T ss_pred CCcceEecC-CEEEEEECCCCCEEEEEE-ecCCCCccceEEecccCCCCEEEEEeccCCCCCeeEEEEe
Confidence 599997655 699999999999999996 53 33333 5 99999999999999999986
|
|
| >cd02853 MTHase_N_term Maltooligosyl trehalose synthase (MTSase) N-terminus domain | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.1e-09 Score=102.49 Aligned_cols=72 Identities=15% Similarity=0.077 Sum_probs=58.6
Q ss_pred cCeeec-CceEEEEEccCCcEEEEEccCCCCccccccceecCCCeEEEEcCCCCCCCcccCcccEEEEEEEEeCCeeeee
Q psy9003 774 QLKYLV-DECHKAGLLCFMHVVCAAGDFNNWNREEFAYKKLDFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHGHLLDR 852 (1276)
Q Consensus 774 G~~y~~-D~a~FalwAP~A~~VsLvGDFN~wd~~~~pM~r~~~GVWsl~Ip~~~~G~~~i~hGs~YkYrV~~~dG~~~~~ 852 (1276)
|+++.. ++++|+||||+|++|+|+.. . + ..++|.+.+.|+|++++++. +| ..|+|++. ++ ..+
T Consensus 1 Ga~~~~~~~~~F~vwAP~A~~V~l~l~-~-~--~~~~m~~~~~G~W~~~v~~~-~g-------~~Y~y~v~--~~--~~~ 64 (85)
T cd02853 1 GARPLGAGGTRFRLWAPDAKRVTLRLD-D-G--EEIPMQRDGDGWFEAEVPGA-AG-------TRYRYRLD--DG--TPV 64 (85)
T ss_pred CCeEcCCCCEEEEEeCCCCCEEEEEec-C-C--CcccCccCCCcEEEEEeCCC-CC-------CeEEEEEC--CC--cCC
Confidence 556776 68999999999999999852 2 3 46899988999999999977 65 59999996 34 368
Q ss_pred cCCcceEee
Q psy9003 853 LSPWATYVT 861 (1276)
Q Consensus 853 ~DPYAkav~ 861 (1276)
.||||++..
T Consensus 65 ~DP~a~~~~ 73 (85)
T cd02853 65 PDPASRFQP 73 (85)
T ss_pred CCCccccCC
Confidence 999999853
|
MTSase and maltooligosyl trehalose trehalohydrolase (MTHase) work together to produce trehalose. MTSase is responsible for converting the alpha-1,4-glucosidic linkage to an alpha,alpha-1,1-glucosidic linkage at the reducing end of the maltooligosaccharide through an intramolecular transglucosylation reaction, while MTHase hydrolyzes the penultimate alpha-1,4 linkage of the reducing end, resulting in the release of trehalose. The N-terminus of MTSase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase. |
| >KOG0508|consensus | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.9e-09 Score=125.31 Aligned_cols=214 Identities=18% Similarity=0.164 Sum_probs=145.6
Q ss_pred CHHHHHHHHhhccccc-------CCCCcchhhhhhhccccccCCC-CccccchhhhhhhcccCCCCHHHHHhhhhhhccc
Q psy9003 201 TPEQLKYLVDECHKAG-------LFGTPEQLKYLVDECHKAGLFG-TPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKA 272 (1276)
Q Consensus 201 ~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~l~~~~~~~~~~g~~~~~~~li~~~h~~ 272 (1276)
|-|.+.+|+++-.-.+ -++|-||++||.+.|--.|-.| |.+-+-+ .-+|++- +-||
T Consensus 28 s~~ei~~l~~~~~~g~tPL~iaaRnGH~~vVeyLle~~~a~~e~~GsV~FDge--------~Iegapp--------LWaA 91 (615)
T KOG0508|consen 28 SNEEIISLIGEVQNGGTPLLIAARNGHADVVEYLLEHCRASPEQGGSVRFDGE--------TIEGAPP--------LWAA 91 (615)
T ss_pred chHHHHHHhccccCCCCceeeehhcCcHHHHHHHHHHhcCCccCCceEEeCCc--------ccCCCch--------hhHH
Confidence 3477889998877544 6889999999999886666533 3322221 1245543 4578
Q ss_pred ccCCChHHHHHHHhhhhccCCCCCccccchhhhhhcccccCCCHHHHHHHhhhhhccCCCCcccchhhhhccccccccCC
Q psy9003 273 GLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFG 352 (1276)
Q Consensus 273 ~~~~~ie~~~yli~e~~~~~~~~~~~~~t~~~~~~~~a~~~gsi~~l~~Lv~~~~~~~~~~~~~~~~~~~~~~~~a~~~g 352 (1276)
.-+||+||||.|+.-. .. .|....| +-|.+..|.--|++|++|||+++.-...+.+- +.-|-.+-||.-|
T Consensus 92 saAGHl~vVk~L~~~g--a~--VN~tT~T-NStPLraACfDG~leivKyLvE~gad~~Ianr-----hGhTcLmIa~ykG 161 (615)
T KOG0508|consen 92 SAAGHLEVVKLLLRRG--AS--VNDTTRT-NSTPLRAACFDGHLEIVKYLVEHGADPEIANR-----HGHTCLMIACYKG 161 (615)
T ss_pred hccCcHHHHHHHHHhc--Cc--ccccccc-CCccHHHHHhcchhHHHHHHHHcCCCCccccc-----CCCeeEEeeeccC
Confidence 8889999999999833 32 2222222 23566677889999999999976555556543 3445566889999
Q ss_pred ChhhhHHhhhhhccccC-CCChhhHHHHHhhhcccccCCChhHHHHHhhhcccccCCCChhhhhcccccchhccccCCHh
Q psy9003 353 TPEQLKYLVDECHKAGL-FGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPE 431 (1276)
Q Consensus 353 ~ie~~~yLi~~~h~~~~-~~~~e~~~~~~~~~~~a~~~~~id~vkyLi~~~h~~~~~~~~~~~~~~vt~lh~a~~~~~~~ 431 (1276)
|.||+.||..-....|. .--.++-.+...+ .||+||||.|+- |+.-|-.+.-|+ |||-.|++.|+.+
T Consensus 162 h~~I~qyLle~gADvn~ks~kGNTALH~caE------sG~vdivq~Ll~--~ga~i~~d~~Gm----tPL~~Aa~tG~~~ 229 (615)
T KOG0508|consen 162 HVDIAQYLLEQGADVNAKSYKGNTALHDCAE------SGSVDIVQLLLK--HGAKIDVDGHGM----TPLLLAAVTGHTD 229 (615)
T ss_pred chHHHHHHHHhCCCcchhcccCchHHHhhhh------cccHHHHHHHHh--CCceeeecCCCC----chHHHHhhhcchH
Confidence 99999999776554432 1112333444444 489999999986 455555555577 9999999999999
Q ss_pred HHHhhcccccccc-cCCChhhHHHH
Q psy9003 432 QLKYLVDECHKAG-LFGTPEQLKYL 455 (1276)
Q Consensus 432 ~~~yli~~~~~~~-~~~~~e~l~~l 455 (1276)
+|++|++ |.+ --..+|-|++|
T Consensus 230 iVe~L~~---~~~sr~~riealEll 251 (615)
T KOG0508|consen 230 IVERLLQ---CETSRESRIEALELL 251 (615)
T ss_pred HHHHHhc---CCcchhhHHHHHHHh
Confidence 9999998 111 12236666666
|
|
| >KOG0508|consensus | Back alignment and domain information |
|---|
Probab=98.93 E-value=2.8e-09 Score=123.89 Aligned_cols=179 Identities=19% Similarity=0.182 Sum_probs=126.3
Q ss_pred cccCCChHHHHHHHhhhhccCCCC---Cccccch-hhhhhcccccCCCHHHHHHHhhhhhccCCCCcccchhhhhcccc-
Q psy9003 272 AGLFGTPEQLKYLVDECHKAGLFG---TPEQLKY-LVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECH- 346 (1276)
Q Consensus 272 ~~~~~~ie~~~yli~e~~~~~~~~---~~~~~t~-~~~~~~~a~~~gsi~~l~~Lv~~~~~~~~~~~~~~~~~~~~~~~- 346 (1276)
++-.||.++|+||.+-|--+|-.+ +-.|+++ +.+.+--|...|++|+||.|++.. ++||+|. .||||
T Consensus 49 aaRnGH~~vVeyLle~~~a~~e~~GsV~FDge~IegappLWaAsaAGHl~vVk~L~~~g--a~VN~tT------~TNStP 120 (615)
T KOG0508|consen 49 AARNGHADVVEYLLEHCRASPEQGGSVRFDGETIEGAPPLWAASAAGHLEVVKLLLRRG--ASVNDTT------RTNSTP 120 (615)
T ss_pred ehhcCcHHHHHHHHHHhcCCccCCceEEeCCcccCCCchhhHHhccCcHHHHHHHHHhc--Ccccccc------ccCCcc
Confidence 334699999999999775554322 1123333 345566677899999999999998 7888763 45554
Q ss_pred --ccccCCChhhhHHhhhhhcccc-C-CCChhhHHHHHhhhcccccCCChhHHHHHhhhcccccCCCChhhhhcccccch
Q psy9003 347 --KAGLFGTPEQLKYLVDECHKAG-L-FGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECH 422 (1276)
Q Consensus 347 --~a~~~g~ie~~~yLi~~~h~~~-~-~~~~e~~~~~~~~~~~a~~~~~id~vkyLi~~~h~~~~~~~~~~~~~~vt~lh 422 (1276)
-||-.||.||||||| |..-++ + |+++. |=..-|...||.||+.||..-. -|+.+.+-.|. |.||
T Consensus 121 LraACfDG~leivKyLv-E~gad~~IanrhGh------TcLmIa~ykGh~~I~qyLle~g-ADvn~ks~kGN----TALH 188 (615)
T KOG0508|consen 121 LRAACFDGHLEIVKYLV-EHGADPEIANRHGH------TCLMIACYKGHVDIAQYLLEQG-ADVNAKSYKGN----TALH 188 (615)
T ss_pred HHHHHhcchhHHHHHHH-HcCCCCcccccCCC------eeEEeeeccCchHHHHHHHHhC-CCcchhcccCc----hHHH
Confidence 899999999999999 444344 3 55553 2222234489999999998543 36677777788 9999
Q ss_pred hccccCCHhHHHhhcccccccccCCChhhHHHHHHHHhHhccCCChhhHHHhhh
Q psy9003 423 KAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVD 476 (1276)
Q Consensus 423 ~a~~~~~~~~~~yli~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~~~~~~~v~ 476 (1276)
.+|-.||.|+|+.|+..+-+.-+-+- ..+=|+ -+.+.+..+++++|++
T Consensus 189 ~caEsG~vdivq~Ll~~ga~i~~d~~--GmtPL~----~Aa~tG~~~iVe~L~~ 236 (615)
T KOG0508|consen 189 DCAESGSVDIVQLLLKHGAKIDVDGH--GMTPLL----LAAVTGHTDIVERLLQ 236 (615)
T ss_pred hhhhcccHHHHHHHHhCCceeeecCC--CCchHH----HHhhhcchHHHHHHhc
Confidence 99999999999999986665544332 433333 3346677788888876
|
|
| >PHA02792 ankyrin-like protein; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.1e-08 Score=125.75 Aligned_cols=240 Identities=10% Similarity=0.004 Sum_probs=128.2
Q ss_pred ChhhhHHhhhhhcccc---CCCChhhHHHHHhhhcccccCCChhHHHHHhhhcc--cccCCCChhhhhcccccchhcccc
Q psy9003 353 TPEQLKYLVDECHKAG---LFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECH--KAGLFGTPEQLKYLVDECHKAGLF 427 (1276)
Q Consensus 353 ~ie~~~yLi~~~h~~~---~~~~~e~~~~~~~~~~~a~~~~~id~vkyLi~~~h--~~~~~~~~~~~~~~vt~lh~a~~~ 427 (1276)
+.|++|+||.-.+.++ .++. -.+-+.++.++ =.+||+++|++.+- |.+ .+..+.-=-.+.-...
T Consensus 194 ~~~v~k~Li~~g~~~~~~d~~g~-t~l~~~~~~~~-----i~~ei~~~L~~~~~~~~~~-----~~~l~~y~~~~~~~~~ 262 (631)
T PHA02792 194 SLDVINYLISHEKEMRYYTYREH-TTLYYYVDKCD-----IKREIFDALFDSNYSGNEL-----MNILSNYLRKQYRNKN 262 (631)
T ss_pred CHHHHHHHHhCCCCcCccCCCCC-hHHHHHHHccc-----chHHHHHHHHhccccccch-----HhHHHHHHHHHhccCc
Confidence 5777777777665554 2222 22333343321 14777777777643 222 1110000000111111
Q ss_pred CCHh--HHHhhcccccccccCCChhhHHHHHHHHhHhccCCChhhHHHhhhhhcccccCCChhhhhhhhhhhhhhccCCC
Q psy9003 428 GTPE--QLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGT 505 (1276)
Q Consensus 428 ~~~~--~~~yli~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~~~~~~~v~~~~~a~~~~~~e~~~~lv~~~~~~~~~~~ 505 (1276)
+.+| +|.-|++.++--..-..+.-+.+--++.--+-+.+ ++++.+...=..-. ..++|-+++|++.+..+.....
T Consensus 263 ~~id~~iv~~ll~~~~~~~i~~~~~~~~~~~~~~~~~~~~~--~~~q~~l~~Yl~~~-~v~ieiIK~LId~Ga~~~r~~~ 339 (631)
T PHA02792 263 HKIDNYIVDKLLSGHDTFYILELCNSLRNNIIISSILKRYT--DSIQDLLSEYVSYH-TVYINVIKCMIDEGATLYRFKH 339 (631)
T ss_pred cCccHHHHHHHHhCCCccchhhhhhhhhhhhHHHHHHHHHh--HHHHHHHHHHHhcC-CccHHHHHHHHHCCCccccCCc
Confidence 2344 77777777663222222222222111111111111 45555532111111 4789999999999988753211
Q ss_pred HHHHHHHhhhhcccccCCCHHHHHHHHhhhhhcCCCCCcchhhhhhhhhhccccC---CCHHHHHHHHHhhhhccCCCCh
Q psy9003 506 PEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLF---GTPEQLKYLVDECHKAGLFGTP 582 (1276)
Q Consensus 506 ~~~~~~~~t~~~~a~~~g~~e~~~~lv~~~~~~~~~~t~~~l~~~~~~~~~~~~~---~~~e~~~~l~~~~~~~~~~~~~ 582 (1276)
......|...|++|++++|+..++++|..+... ...|..+.|... +..+-+++|+..++++|.....
T Consensus 340 -------~n~~~~Aa~~gn~eIVelLIs~GADIN~kD~~g---~~~TpLh~A~~n~~~~v~~IlklLIs~GADIN~kD~~ 409 (631)
T PHA02792 340 -------INKYFQKFDNRDPKVVEYILKNGNVVVEDDDNI---INIMPLFPTLSIHESDVLSILKLCKPYIDDINKIDKH 409 (631)
T ss_pred -------chHHHHHHHcCCHHHHHHHHHcCCchhhhcCCC---CChhHHHHHHHhccHhHHHHHHHHHhcCCcccccccc
Confidence 122345677999999999999999998544321 011222222222 3344578889999998843322
Q ss_pred hhhhhhhhhhcccccCCCHHHHHHHHhhhhhccCCCChh
Q psy9003 583 EQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPE 621 (1276)
Q Consensus 583 ~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~~ 621 (1276)
- .|..+.|...++.|.+++|+..++++|.+-...
T Consensus 410 G-----~TPLh~Aa~~~n~eivelLLs~GADIN~kD~~G 443 (631)
T PHA02792 410 G-----RSILYYCIESHSVSLVEWLIDNGADINITTKYG 443 (631)
T ss_pred C-----cchHHHHHHcCCHHHHHHHHHCCCCCCCcCCCC
Confidence 2 455666668999999999999999998775444
|
|
| >cd02853 MTHase_N_term Maltooligosyl trehalose synthase (MTSase) N-terminus domain | Back alignment and domain information |
|---|
Probab=98.89 E-value=4.5e-09 Score=98.44 Aligned_cols=67 Identities=19% Similarity=0.149 Sum_probs=54.4
Q ss_pred cceEecCCcEEEEEEccCCceEEEEeeccCCCcce------EEEEEccCccccceEEEEEecCCC-----------CCCc
Q psy9003 66 GIHVQADNSVRCFEWAPSAQQLYLTGNVSLTPWSI------MEEASLSSIKLIQSIQYILTGVFG-----------TPEQ 128 (1276)
Q Consensus 66 Gah~~~~gg~~f~~wAP~A~~v~l~gdfn~~~w~m------~~~~~~~~~~~g~~yky~i~~~~g-----------rp~~ 128 (1276)
||.+..++|++|++|||+|++|.|...+ |..-.| +|+++++++ +|+.|+|+|.+..- .|+.
T Consensus 1 Ga~~~~~~~~~F~vwAP~A~~V~l~l~~-~~~~~m~~~~~G~W~~~v~~~-~g~~Y~y~v~~~~~~~DP~a~~~~~~~~~ 78 (85)
T cd02853 1 GARPLGAGGTRFRLWAPDAKRVTLRLDD-GEEIPMQRDGDGWFEAEVPGA-AGTRYRYRLDDGTPVPDPASRFQPEGVHG 78 (85)
T ss_pred CCeEcCCCCEEEEEeCCCCCEEEEEecC-CCcccCccCCCcEEEEEeCCC-CCCeEEEEECCCcCCCCCccccCCCCCCC
Confidence 7777777789999999999999999753 322236 999999999 99999999984211 6888
Q ss_pred cccccc
Q psy9003 129 LKYLVD 134 (1276)
Q Consensus 129 as~~~d 134 (1276)
||+|+|
T Consensus 79 ~s~v~~ 84 (85)
T cd02853 79 PSQVVD 84 (85)
T ss_pred CeEeeC
Confidence 999887
|
MTSase and maltooligosyl trehalose trehalohydrolase (MTHase) work together to produce trehalose. MTSase is responsible for converting the alpha-1,4-glucosidic linkage to an alpha,alpha-1,1-glucosidic linkage at the reducing end of the maltooligosaccharide through an intramolecular transglucosylation reaction, while MTHase hydrolyzes the penultimate alpha-1,4 linkage of the reducing end, resulting in the release of trehalose. The N-terminus of MTSase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase. |
| >TIGR01531 glyc_debranch glycogen debranching enzymye | Back alignment and domain information |
|---|
Probab=98.86 E-value=2.8e-09 Score=137.81 Aligned_cols=50 Identities=22% Similarity=0.316 Sum_probs=41.9
Q ss_pred ccc-cccccccCCCC----CCHHHHHHHHHHHHHc-CCEEEEEEeccccCCcccCC
Q psy9003 1020 LKY-LVDECHKAGLF----GTPEQLKYLVDECHKA-GLYVLLDVVHSHASKNVLDG 1069 (1276)
Q Consensus 1020 hkY-t~D~~~ID~~~----Gt~eEfK~LV~alHk~-GI~VILDvV~NHt~~~~~~~ 1069 (1276)
|+| +.||.+|||.+ |+.++|++||+++|++ ||++|+|+|+|||+.+++|.
T Consensus 162 S~Ysi~Dyl~idP~~~~~~~~~~d~~~lV~~~h~~~Gm~~ilDvV~NHTa~ds~Wl 217 (1464)
T TIGR01531 162 SCYSLYDQLQLNQHFKSQKDGKNDVQALVEKLHRDWNVLSITDIVFNHTANNSPWL 217 (1464)
T ss_pred CCccccchhhcChhhcccCCcHHHHHHHHHHHHHhcCCEEEEEeeecccccCCHHH
Confidence 344 55666677777 5899999999999997 99999999999999998653
|
glycogen debranching enzyme possesses two different catalytic activities; oligo-1,4--1,4-glucantransferase (EC 2.4.1.25) and amylo-1,6-glucosidase (EC 3.2.1.33). Site directed mutagenesis studies in S. cerevisiae indicate that the transferase and glucosidase activities are independent and located in different regions of the polypeptide chain. Proteins in this model belong to the larger alpha-amylase family. The model covers eukaryotic proteins with a seed composed of human, nematode and yeast sequences. Yeast seed sequence is well characterized. The model is quite rigorous; either query sequence yields large bit score or it fails to hit the model altogether. There doesn't appear to be any middle ground. |
| >PHA02792 ankyrin-like protein; Provisional | Back alignment and domain information |
|---|
Probab=98.85 E-value=6.7e-08 Score=118.87 Aligned_cols=338 Identities=11% Similarity=-0.010 Sum_probs=191.4
Q ss_pred HHHHHhhhhhhcccccCCChHHHHHHHhhhhccCCCCCccccchhhhhhccccc-CCCHHHHHHHhhhhhc--cCCCCcc
Q psy9003 259 PEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGL-FGTPEQLKYLVDECHK--AGLFGTP 335 (1276)
Q Consensus 259 ~~~~~~li~~~h~~~~~~~ie~~~yli~e~~~~~~~~~~~~~t~~~~~~~~a~~-~gsi~~l~~Lv~~~~~--~~~~~~~ 335 (1276)
.+++.|+.+ ..+++|+||+||. |.+......++ ..+..+-|.. .+++|++++|++..-. .+.+.+.
T Consensus 72 ~~~~~~~~s------~n~~lElvk~LI~--~GAdvN~~~n~---~~~~l~ya~~~~~~~eivk~Ll~~Gad~~~~~~~g~ 140 (631)
T PHA02792 72 FDIFEYLCS------DNIDIELLKLLIS--KGLEINSIKNG---INIVEKYATTSNPNVDVFKLLLDKGIPTCSNIQYGY 140 (631)
T ss_pred ccHHHHHHH------hcccHHHHHHHHH--cCCCcccccCC---CCcceeEeecCCCChHHHHHHHHCCCCcccccccCc
Confidence 457777764 3467999999999 45543222222 1223344434 6999999999998542 2333332
Q ss_pred cchhhhhccccccccCCChhhhHHhhhhhcccc----C----CCChhhHH--HHHhhhcccccCCChhHHHHHhhhcccc
Q psy9003 336 EQLKYLVDECHKAGLFGTPEQLKYLVDECHKAG----L----FGTPEQLK--YLVDECHKAGLFGTPEQLKYLVDECHKA 405 (1276)
Q Consensus 336 ~~~~~~~~~~~~a~~~g~ie~~~yLi~~~h~~~----~----~~~~e~~~--~~~~~~~~a~~~~~id~vkyLi~~~h~~ 405 (1276)
..+-.-+|++.. |=-++|+.+- + .....+.. |.+++|. .-..-+.|++|+||+.....
T Consensus 141 ~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~i~~~~~~g~t~L~~~i~~~s~-~~~~~~~~v~k~Li~~g~~~ 208 (631)
T PHA02792 141 KIIIEQITRAEY-----------YNWDDELDDYDYDYTTDYDDRMGKTVLYYYIITRSQ-DGYATSLDVINYLISHEKEM 208 (631)
T ss_pred chhhhhcccccc-----------cchhhhccccccccccccCCCCCCchHHHHHhhCCc-ccccCCHHHHHHHHhCCCCc
Confidence 222222232221 2234454422 1 11122222 2222210 00001699999999876644
Q ss_pred cCCCChhhhhcccccchhccccC--CHhHHHhhcccccccccCCChhhHHHHHHHHhHhc----cCCChhhHHHhhhhhc
Q psy9003 406 GLFGTPEQLKYLVDECHKAGLFG--TPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAG----LFGTPEQLKYLVDECH 479 (1276)
Q Consensus 406 ~~~~~~~~~~~~vt~lh~a~~~~--~~~~~~yli~~~~~~~~~~~~e~l~~l~~~~~~~~----~~~~~~~~~~~v~~~~ 479 (1276)
+-- +..+- |+||.|+.+. ..|+++.|++++- --- +---+|.+-...-- .+-..++|.-|.+.+|
T Consensus 209 ~~~-d~~g~----t~l~~~~~~~~i~~ei~~~L~~~~~--~~~---~~~~~l~~y~~~~~~~~~~~id~~iv~~ll~~~~ 278 (631)
T PHA02792 209 RYY-TYREH----TTLYYYVDKCDIKREIFDALFDSNY--SGN---ELMNILSNYLRKQYRNKNHKIDNYIVDKLLSGHD 278 (631)
T ss_pred Ccc-CCCCC----hHHHHHHHcccchHHHHHHHHhccc--ccc---chHhHHHHHHHHHhccCccCccHHHHHHHHhCCC
Confidence 432 33466 9999999888 7899999999733 111 11112222222211 2234457777777777
Q ss_pred ccccCCChhhhhhhhhhhhhhccCCCHHHHHHHhhhhcccccCCCHHHHHHHHhhhhhcCCCCCcchhhhhhhhhhcccc
Q psy9003 480 KAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGL 559 (1276)
Q Consensus 480 ~a~~~~~~e~~~~lv~~~~~~~~~~~~~~~~~~~t~~~~a~~~g~~e~~~~lv~~~~~~~~~~t~~~l~~~~~~~~~~~~ 559 (1276)
.-.+-.++--+.+.-++.-.+- -....+..++..=..-+ -.++|++|+|++.++.+.-... .+.-..|..
T Consensus 279 ~~~i~~~~~~~~~~~~~~~~~~--~~~~~~q~~l~~Yl~~~-~v~ieiIK~LId~Ga~~~r~~~-------~n~~~~Aa~ 348 (631)
T PHA02792 279 TFYILELCNSLRNNIIISSILK--RYTDSIQDLLSEYVSYH-TVYINVIKCMIDEGATLYRFKH-------INKYFQKFD 348 (631)
T ss_pred ccchhhhhhhhhhhhHHHHHHH--HHhHHHHHHHHHHHhcC-CccHHHHHHHHHCCCccccCCc-------chHHHHHHH
Confidence 4443344444444322222221 11234444422222222 4799999999999998751111 122346678
Q ss_pred CCCHHHHHHHHHhhhhccCCC----ChhhhhhhhhhhcccccCCCHHHHHHHHhhhhhccCCCChhhhhhhHHHhhhccC
Q psy9003 560 FGTPEQLKYLVDECHKAGLFG----TPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGL 635 (1276)
Q Consensus 560 ~~~~e~~~~l~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 635 (1276)
.|++|.+++|+..|+++|... +..-|.+.+ .....+..+.+++|+..++++|.+-+.- .++++.|..
T Consensus 349 ~gn~eIVelLIs~GADIN~kD~~g~~~TpLh~A~----~n~~~~v~~IlklLIs~GADIN~kD~~G-----~TPLh~Aa~ 419 (631)
T PHA02792 349 NRDPKVVEYILKNGNVVVEDDDNIINIMPLFPTL----SIHESDVLSILKLCKPYIDDINKIDKHG-----RSILYYCIE 419 (631)
T ss_pred cCCHHHHHHHHHcCCchhhhcCCCCChhHHHHHH----HhccHhHHHHHHHHHhcCCccccccccC-----cchHHHHHH
Confidence 999999999999999998332 223333321 2222334567899999999998654444 778888888
Q ss_pred CCCHHHHHHHHHH
Q psy9003 636 FGTPEQLKYLVDE 648 (1276)
Q Consensus 636 ~~~~~~~~~~~~~ 648 (1276)
.+..|.+++|++.
T Consensus 420 ~~n~eivelLLs~ 432 (631)
T PHA02792 420 SHSVSLVEWLIDN 432 (631)
T ss_pred cCCHHHHHHHHHC
Confidence 9999999999974
|
|
| >cd02860 Pullulanase_N_term Pullulanase domain N-terminus | Back alignment and domain information |
|---|
Probab=98.84 E-value=7.3e-09 Score=99.68 Aligned_cols=58 Identities=17% Similarity=0.083 Sum_probs=49.1
Q ss_pred ccceEecCCcEEEEEEccCCceEEEEeecc-CCC---cc---e------EEEEEccCccccceEEEEEecCCC
Q psy9003 65 YGIHVQADNSVRCFEWAPSAQQLYLTGNVS-LTP---WS---I------MEEASLSSIKLIQSIQYILTGVFG 124 (1276)
Q Consensus 65 fGah~~~~gg~~f~~wAP~A~~v~l~gdfn-~~~---w~---m------~~~~~~~~~~~g~~yky~i~~~~g 124 (1276)
+||++.. +|++|++|||+|++|.|.. |+ |++ +. | +|+++|++..+|+.|+|+|.+.++
T Consensus 1 lGa~~~~-~~~~F~vwAP~A~~V~L~l-~~~~~~~~~~~~~~m~~~~~gvw~~~v~~~~~g~~Y~y~i~~~~~ 71 (100)
T cd02860 1 LGAVYTP-EKTTFRLWAPTAQSVKLLL-YDKDDQDKVLETVQMKRGENGVWSVTLDGDLEGYYYLYEVKVYKG 71 (100)
T ss_pred CCCEEeC-CCEEEEEECCCCcEEEEEE-EcCCCCCCcceeEeeecCCCCEEEEEeCCccCCcEEEEEEEEece
Confidence 6999876 5699999999999999998 84 431 12 5 999999999999999999998744
|
Pullulanase (AKA dextrinase; alpha-dextrin endo-1,6-alpha glucosidase) is an enzyme with action similar to that of isoamylase; it cleaves 1,6-alpha-glucosidic linkages in pullulan, amylopectin, and glycogen, and in alpha-and beta-amylase limit-dextrins of amylopectin and glycogen. The N-terminus of pullulanase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase. |
| >cd02858 Esterase_N_term Esterase N-terminal domain | Back alignment and domain information |
|---|
Probab=98.79 E-value=2.1e-08 Score=94.29 Aligned_cols=70 Identities=13% Similarity=0.119 Sum_probs=54.1
Q ss_pred CceEEEEEccCCcEEEEEccCCCCccccccceecCCCeEEEEcCCCCCCCcccCcccEEEEEEEEeCCeeeeecCCcceE
Q psy9003 780 DECHKAGLLCFMHVVCAAGDFNNWNREEFAYKKLDFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHGHLLDRLSPWATY 859 (1276)
Q Consensus 780 D~a~FalwAP~A~~VsLvGDFN~wd~~~~pM~r~~~GVWsl~Ip~~~~G~~~i~hGs~YkYrV~~~dG~~~~~~DPYAka 859 (1276)
.+++|++|||.|++|+|+++||+| ..++|++.+.|+|+++++....| .|+|++. .|| ...+||+++.
T Consensus 6 ~~v~F~vwAP~A~~V~L~~~~~~~--~~~~m~~~~~G~W~~~v~~l~~g--------~Y~Y~~~-vdg--~~~~DP~s~~ 72 (85)
T cd02858 6 RTVTFRLFAPKANEVQVRGSWGGA--GSHPMTKDEAGVWSVTTGPLAPG--------IYTYSFL-VDG--VRVIDPSNPT 72 (85)
T ss_pred CcEEEEEECCCCCEEEEEeecCCC--ccEeCeECCCeEEEEEECCCCCc--------EEEEEEE-ECC--eEecCCCCCc
Confidence 358999999999999999999865 46899998899999999654333 4555554 267 4579999976
Q ss_pred eec
Q psy9003 860 VTE 862 (1276)
Q Consensus 860 v~~ 862 (1276)
...
T Consensus 73 ~~~ 75 (85)
T cd02858 73 TKP 75 (85)
T ss_pred eee
Confidence 543
|
Esterases catalyze the hydrolysis of organic esters to release an alcohol or thiol and acid. The term can be applied to enzymes that hydrolyze carboxylate, phosphate and sulphate esters, but is more often restricted to the first class of substrate. The N-terminus of esterase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase. |
| >KOG4412|consensus | Back alignment and domain information |
|---|
Probab=98.76 E-value=7.8e-09 Score=108.57 Aligned_cols=168 Identities=17% Similarity=0.073 Sum_probs=135.7
Q ss_pred ChhhhhcccccchhccccCCHhHHHhhcccccccccCCChhhHHHHHHHHhHhccCCChhhHHHhhhhhcccccCCChhh
Q psy9003 410 TPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQ 489 (1276)
Q Consensus 410 ~~~~~~~~vt~lh~a~~~~~~~~~~yli~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~~~~~~~v~~~~~a~~~~~~e~ 489 (1276)
+-++. ||||.|+..|+.++|+.|++.-+- +++.-|| +=||+.|-|..+|..|.
T Consensus 35 dqD~R----t~LHwa~S~g~~eiv~fLlsq~nv--------------------~~ddkDd---aGWtPlhia~s~g~~ev 87 (226)
T KOG4412|consen 35 DQDGR----TPLHWACSFGHVEIVYFLLSQPNV--------------------KPDDKDD---AGWTPLHIAASNGNDEV 87 (226)
T ss_pred cccCC----ceeeeeeecCchhHHHHHHhcCCC--------------------CCCCccc---cCCchhhhhhhcCcHHH
Confidence 33788 999999999999999999872211 1222222 33899999999999999
Q ss_pred hhhhhhh-hhhhccCCCHHHHHHHhhhhcccccCCCHHHHHHHHhhhhhcCCCCCcchhhhhhhhhhccccCCCHHHHHH
Q psy9003 490 LKYLVDE-CHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKY 568 (1276)
Q Consensus 490 ~~~lv~~-~~~~~~~~~~~~~~~~~t~~~~a~~~g~~e~~~~lv~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~e~~~~ 568 (1276)
++-|.+. ..+.|..-+ -.+|+.|+|.--|-+|++.+|++.++.|++.+- |.+|-+|.|-.-|+++.++|
T Consensus 88 Vk~Ll~r~~advna~tn-----~G~T~LHyAagK~r~eIaqlLle~ga~i~~kD~-----~~qtplHRAAavGklkvie~ 157 (226)
T KOG4412|consen 88 VKELLNRSGADVNATTN-----GGQTCLHYAAGKGRLEIAQLLLEKGALIRIKDK-----QGQTPLHRAAAVGKLKVIEY 157 (226)
T ss_pred HHHHhcCCCCCcceecC-----CCcceehhhhcCChhhHHHHHHhcCCCCccccc-----ccCchhHHHHhccchhhHHH
Confidence 9988887 555553332 348999999999999999999999999998887 99999999999999999999
Q ss_pred HHHhhhhccCCCChhhhhhhhhhhcccccCCCHHHHHHHHhhhhhccCCCC
Q psy9003 569 LVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGT 619 (1276)
Q Consensus 569 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~ 619 (1276)
|++.++++|.-++.- -|..+.|+--|..+...+||..++++-++-+
T Consensus 158 Li~~~a~~n~qDk~G-----~TpL~~al~e~~~d~a~lLV~~gAd~~~edk 203 (226)
T KOG4412|consen 158 LISQGAPLNTQDKYG-----FTPLHHALAEGHPDVAVLLVRAGADTDREDK 203 (226)
T ss_pred HHhcCCCCCcccccC-----ccHHHHHHhccCchHHHHHHHhccceeeccc
Confidence 999999998544433 5666666678899999999999999865443
|
|
| >KOG0510|consensus | Back alignment and domain information |
|---|
Probab=98.75 E-value=2e-08 Score=122.86 Aligned_cols=381 Identities=17% Similarity=0.080 Sum_probs=215.0
Q ss_pred ccccccccCCChhhhHHhhhhhccccCCCChhhHHHHHhhhcccccCCChhHHHHHhhhcccccCCCChhhhhcccccch
Q psy9003 343 DECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECH 422 (1276)
Q Consensus 343 ~~~~~a~~~g~ie~~~yLi~~~h~~~~~~~~e~~~~~~~~~~~a~~~~~id~vkyLi~~~h~~~~~~~~~~~~~~vt~lh 422 (1276)
++.|.|.-....|.+.+|+.+....+..+- +-.+-.|-|...|..+.++.|+.-. -|+-..+..+. ||||
T Consensus 90 ~~l~~a~~~~~~~~i~~Lls~gad~~~~n~-----~~~aplh~A~~~~~~s~L~~Ll~~~-~dvnl~de~~~----TpLh 159 (929)
T KOG0510|consen 90 TPLHAAVEYNQGDKIQVLLSYGADTPLRNL-----NKNAPLHLAADSGNYSCLKLLLDYG-ADVNLEDENGF----TPLH 159 (929)
T ss_pred chhHHHhhcchHHHHHHHHhcCCCCChhhh-----hccCchhhccccchHHHHHHHHHhc-CCccccccCCC----chhh
Confidence 445556666778889999888876664221 1122233444457788899998877 44445555666 9999
Q ss_pred hccccCCHhHHHhhcccccccccCCChhhHHHHHHHHhHhccCCChhhHHHhhhhhcccccCCChhhhhhhhhhhhhhcc
Q psy9003 423 KAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGL 502 (1276)
Q Consensus 423 ~a~~~~~~~~~~yli~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~~~~~~~v~~~~~a~~~~~~e~~~~lv~~~~~~~~ 502 (1276)
.||+.++.|..|-||+.+-|.+.-.+.. ...-|++.++++.|-.|-.+. .+|--+| ..+|.
T Consensus 160 ~A~~~~~~E~~k~Li~~~a~~~K~~~~~-----~~~iH~aa~s~s~e~mEi~l~------~~g~~r~--------~~in~ 220 (929)
T KOG0510|consen 160 LAARKNKVEAKKELINKGADPCKSDIDG-----NFPIHEAARSGSKECMEIFLP------EHGYERQ--------THINF 220 (929)
T ss_pred HHHhcChHHHHHHHHhcCCCCCcccCcC-----CchHHHHHHhcchhhhhhhhc------cccchhh--------ccccc
Confidence 9999999998788888887777655422 223455555555554443332 1111111 11111
Q ss_pred CCCHHHHHHHhhhhcccccCCCHHHHHHHHhhhhhcC-------------CCCCcchhhhhhhhhhccccCCCHHHHHHH
Q psy9003 503 FGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAG-------------LFGTPEQLKYLVDECHKAGLFGTPEQLKYL 569 (1276)
Q Consensus 503 ~~~~~~~~~~~t~~~~a~~~g~~e~~~~lv~~~~~~~-------------~~~t~~~l~~~~~~~~~~~~~~~~e~~~~l 569 (1276)
-.+ -.-|+.|-|-..|.+|++|....-...|- |+..|+ =.||-+|.|+.+|.+|.+-.|
T Consensus 221 ~~n-----~~~~pLhlAve~g~~e~lk~~L~n~~~~a~~~~~~~~q~kelv~~~d~---dg~tpLH~a~r~G~~~svd~L 292 (929)
T KOG0510|consen 221 DNN-----EKATPLHLAVEGGDIEMLKMCLQNGKKIADVQLDAMQQEKELVNDEDN---DGCTPLHYAARQGGPESVDNL 292 (929)
T ss_pred ccC-----CCCcchhhhhhcCCHHHHHHHHhCccccchhhhHHHHHHHHHhhcccc---cCCchHHHHHHcCChhHHHHH
Confidence 110 01245555555666666665554443332 111111 135666777788888888888
Q ss_pred HHhhhhccCCCChhhhhhhhhhhcccccCCCHHHHHHHHhhhhhccCCCChhhhhhhHHHhhhccCCCCHHHHHHHHH--
Q psy9003 570 VDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVD-- 647 (1276)
Q Consensus 570 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 647 (1276)
.+.++.||....|+ =+..|.|...|++.-+.-|++ |-|+...++-+-.--+..|-|..-|+--.++.|++
T Consensus 293 l~~Ga~I~~kn~d~-----~spLH~AA~yg~~ntv~rLL~---~~~~rllne~D~~g~tpLHlaa~~gH~~v~qlLl~~G 364 (929)
T KOG0510|consen 293 LGFGASINSKNKDE-----ESPLHFAAIYGRINTVERLLQ---ESDTRLLNESDLHGMTPLHLAAKSGHDRVVQLLLNKG 364 (929)
T ss_pred HHcCCcccccCCCC-----CCchHHHHHcccHHHHHHHHh---CcCccccccccccCCCchhhhhhcCHHHHHHHHHhcC
Confidence 88888888444444 466777778888877777777 55555555433333455566666677777777776
Q ss_pred HHHhhcCCCChHHHhhhhhhhhhcccCCChhHHHHHHHHHHhhccCCChh--HHHhhHHHHhhcccC-------------
Q psy9003 648 ECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPE--QLKYLVDECHKAGLF------------- 712 (1276)
Q Consensus 648 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~------------- 712 (1276)
|...+ .+ |.=++=-+++|+|+.||..-.+.+|+-.=+.+|+++-.. ++-|..+.+.++-.|
T Consensus 365 A~~~~--~~--e~D~dg~TaLH~Aa~~g~~~av~~Li~~Ga~I~~~n~~g~SA~~~~~~~~~p~~~~~~~~n~c~~~~~i 440 (929)
T KOG0510|consen 365 ALFLN--MS--EADSDGNTALHLAAKYGNTSAVQKLISHGADIGVKNKKGKSAFDTRPDRCLPVFVHRSPFNKCPTTELI 440 (929)
T ss_pred hhhhc--cc--ccccCCchhhhHHHHhccHHHHHHHHHcCCceeeccccccccccccccccccHHHhhCCCCCcchhhhh
Confidence 22111 11 222233348999999999999999988766666633222 222222222221111
Q ss_pred -CCHHHHHHHHHHHHhcc-C---CCCchh--hhhhhhhhhccCcccChhhhhhhHhhccccCCCCCc
Q psy9003 713 -GTPEQLKYLVDECHKAG-L---FGTPEQ--LKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTP 772 (1276)
Q Consensus 713 -~~~~~~~~~~~~~~~~~-~---~~~~~~--~~~~~~~~~~~~~~~~~e~l~~F~~~Y~~~G~~Gtp 772 (1276)
-=+|-++..+|.|..-- + --++.| ++=.+-.|+..|-.---+|.-..+.-|-++++.|.+
T Consensus 441 ~~~pe~~e~vlD~c~l~~~e~~~~~~~~Q~~~~~~~~~mv~~~~~eLL~HPL~ssfL~mKW~~~g~~ 507 (929)
T KOG0510|consen 441 EPLPECFEIVLDFCILKSQERKDSPTPLQDEAAPILNIMVDKEQIELLEHPLSSSFLFMKWNRYGKY 507 (929)
T ss_pred ccchHHHHHHHHHHHHHHhhccCCCChhhhhhhhHHHHHhhhhHHHHhcChhHHHHHHHHHHHhhHH
Confidence 12466677777643211 1 144444 333455566666666555544444445555555543
|
|
| >cd02861 E_set_proteins_like E or "early" set-like proteins | Back alignment and domain information |
|---|
Probab=98.67 E-value=6.9e-08 Score=89.97 Aligned_cols=70 Identities=26% Similarity=0.315 Sum_probs=56.6
Q ss_pred ceEEEEEccCCcEEEEEccCCCCccccccceecCCCeEEEEcCCCCCCCcccCcccEEEEEEEEeCCeeeeecCCcceEe
Q psy9003 781 ECHKAGLLCFMHVVCAAGDFNNWNREEFAYKKLDFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHGHLLDRLSPWATYV 860 (1276)
Q Consensus 781 ~a~FalwAP~A~~VsLvGDFN~wd~~~~pM~r~~~GVWsl~Ip~~~~G~~~i~hGs~YkYrV~~~dG~~~~~~DPYAkav 860 (1276)
.++|++|+|.|++|+|.|+||+|+ ..+|.+...|+|+++++ ...|. +.|+|.+ ||.+. ..||.+...
T Consensus 3 ~vtf~~~ap~a~~V~v~G~fn~W~--~~~m~~~~~G~w~~~~~-l~~G~------y~Ykf~v---dg~~~-~~DP~~~~~ 69 (82)
T cd02861 3 PVVFAYRGPEADSVYLAGSFNNWN--AIPMEREGDGLWVVTVE-LRPGR------YEYKFVV---DGEWV-IVDPNAAAY 69 (82)
T ss_pred cEEEEEECCCCCEEEEEeECCCCC--cccCEECCCCcEEEEEe-CCCCc------EEEEEEE---CCEEe-eCCCCCCce
Confidence 368999999999999999999996 67999877899999997 44443 5788887 67653 589999765
Q ss_pred ecC
Q psy9003 861 TEP 863 (1276)
Q Consensus 861 ~~~ 863 (1276)
..+
T Consensus 70 ~~~ 72 (82)
T cd02861 70 VDD 72 (82)
T ss_pred ecC
Confidence 443
|
These alpha amylase-like sugar utilizing enzymes which may be related to the immunoglobulin and/or fibronectin type III superfamilies are associated with different types of catalytic domains at either the N-terminal or C-terminal end. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase. |
| >PHA02795 ankyrin-like protein; Provisional | Back alignment and domain information |
|---|
Probab=98.63 E-value=3.7e-08 Score=117.14 Aligned_cols=130 Identities=8% Similarity=-0.065 Sum_probs=67.0
Q ss_pred hhhcccccCCChhhhhhhhhhhhhhccCCCHHHHHHH-hhhhcccccCCCHHHHHHHHhhhhhcCCCCCcchhhhhhhhh
Q psy9003 476 DECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYL-VDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDEC 554 (1276)
Q Consensus 476 ~~~~~a~~~~~~e~~~~lv~~~~~~~~~~~~~~~~~~-~t~~~~a~~~g~~e~~~~lv~~~~~~~~~~t~~~l~~~~~~~ 554 (1276)
|..|.|..++..|-+++|...++.+...+..++...+ .|+.+-|...+.+|++++|+.-++++|..+. +.-|..
T Consensus 151 t~lh~A~~~~~~eIVk~Lls~Ga~~~n~~~~~l~~~~~~t~l~~a~~~~~~eIve~LIs~GADIN~kD~-----~G~TpL 225 (437)
T PHA02795 151 NAYFRGICKKESSVVEFILNCGIPDENDVKLDLYKIIQYTRGFLVDEPTVLEIYKLCIPYIEDINQLDA-----GGRTLL 225 (437)
T ss_pred CHHHHHHHcCcHHHHHHHHhcCCcccccccchhhhhhccchhHHHHhcCHHHHHHHHHhCcCCcCcCCC-----CCCCHH
Confidence 3444444445555555554444432222222221111 2444445556666777777766666665444 334444
Q ss_pred hccccCCCHHHHHHHHHhhhhccCCCChhhhhhhhhhhcccccCCC--------HHHHHHHHhhhhhcc
Q psy9003 555 HKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGT--------PEQLKYLVDECHKAG 615 (1276)
Q Consensus 555 ~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~e~~~~l~~~~~~~~ 615 (1276)
+.|...|+.|.+++|++.++++|.....- +|..+.|...|+ .|.+++|+..++.++
T Consensus 226 h~Aa~~g~~eiVelLL~~GAdIN~~d~~G-----~TpLh~Aa~~g~~~~~~~~~~eIvelLL~~gadI~ 289 (437)
T PHA02795 226 YRAIYAGYIDLVSWLLENGANVNAVMSNG-----YTCLDVAVDRGSVIARRETHLKILEILLREPLSID 289 (437)
T ss_pred HHHHHcCCHHHHHHHHHCCCCCCCcCCCC-----CCHHHHHHHcCCcccccccHHHHHHHHHhCCCCCC
Confidence 55556667777777777766666333222 444444445543 466777766666554
|
|
| >cd02856 Glycogen_debranching_enzyme_N_term Glycogen_debranching_enzyme N-terminal domain | Back alignment and domain information |
|---|
Probab=98.58 E-value=1.5e-07 Score=91.28 Aligned_cols=56 Identities=14% Similarity=0.098 Sum_probs=47.6
Q ss_pred ccceEecCCcEEEEEEccCCceEEEEeecc-CCCcc---e------EEEEEccCccccceEEEEEecC
Q psy9003 65 YGIHVQADNSVRCFEWAPSAQQLYLTGNVS-LTPWS---I------MEEASLSSIKLIQSIQYILTGV 122 (1276)
Q Consensus 65 fGah~~~~gg~~f~~wAP~A~~v~l~gdfn-~~~w~---m------~~~~~~~~~~~g~~yky~i~~~ 122 (1276)
+||... ++|++|++|||+|++|.|+. |+ +..+. | +|+++|+++.+|..|+|+|.++
T Consensus 2 lGa~~~-~~g~~F~vwAP~A~~V~L~l-~~~~~~~~~~~m~~~~~GvW~~~v~~~~~g~~Y~y~i~g~ 67 (103)
T cd02856 2 LGATLD-GEGCNFAVHSENATRIELCL-FDEDGSETRLPLTEEYGGVWHGFLPGIKAGQRYGFRVHGP 67 (103)
T ss_pred CccEEe-CCCeEEEEECCCCCEEEEEE-EeCCCCEEEEEcccccCCEEEEEECCCCCCCEEEEEECCc
Confidence 789877 55799999999999999999 63 43232 5 9999999999999999999884
|
Glycogen debranching enzymes have both 4-alpha-glucanotransferase and amylo-1,6-glucosidase activities. As a transferase it transfers a segment of a 1,4-alpha-D-glucan to a new 4-position in an acceptor, which may be glucose or another 1,4-alpha-D-glucan. As a glucosidase it catalyzes the endohydrolysis of 1,6-alpha-D-glucoside linkages at points of branching in chains of 1,4-linked alpha-D-glucose residues. The N-terminus of the glycogen debranching enzyme may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase. |
| >KOG0510|consensus | Back alignment and domain information |
|---|
Probab=98.55 E-value=1.3e-07 Score=116.08 Aligned_cols=306 Identities=17% Similarity=0.091 Sum_probs=201.2
Q ss_pred cccchhhhhhcccccCCCHHHHHHHhhhhhccCCCCcccchhhhhccccccccCCChhhhHHhhhhhccccCCCChhhHH
Q psy9003 298 EQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLK 377 (1276)
Q Consensus 298 ~~~t~~~~~~~~a~~~gsi~~l~~Lv~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~ie~~~yLi~~~h~~~~~~~~e~~~ 377 (1276)
++.+.+ |-|+.....|.+++|..+....++.+- +-..+.|.|...|..+-|+.|++-. +++|--+|-
T Consensus 87 ~~n~~l----~~a~~~~~~~~i~~Lls~gad~~~~n~-----~~~aplh~A~~~~~~s~L~~Ll~~~--~dvnl~de~-- 153 (929)
T KOG0510|consen 87 ADNTPL----HAAVEYNQGDKIQVLLSYGADTPLRNL-----NKNAPLHLAADSGNYSCLKLLLDYG--ADVNLEDEN-- 153 (929)
T ss_pred ccCchh----HHHhhcchHHHHHHHHhcCCCCChhhh-----hccCchhhccccchHHHHHHHHHhc--CCccccccC--
Confidence 444444 445556678888888888776664432 3345566677777888888887766 444333320
Q ss_pred HHHhhhcccccCCChhHHHHHhhhcccccCCCChhhhhcccccchhccccCCHhHHHhhcccccccccCCChhhHHHHHH
Q psy9003 378 YLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVD 457 (1276)
Q Consensus 378 ~~~~~~~~a~~~~~id~vkyLi~~~h~~~~~~~~~~~~~~vt~lh~a~~~~~~~~~~yli~~~~~~~~~~~~e~l~~l~~ 457 (1276)
-.|-.|.|+..++-|..|.|||.--|.+. .+..+- +|+|+|++.|+.+-++-.+.+-- ++
T Consensus 154 -~~TpLh~A~~~~~~E~~k~Li~~~a~~~K-~~~~~~----~~iH~aa~s~s~e~mEi~l~~~g--------------~~ 213 (929)
T KOG0510|consen 154 -GFTPLHLAARKNKVEAKKELINKGADPCK-SDIDGN----FPIHEAARSGSKECMEIFLPEHG--------------YE 213 (929)
T ss_pred -CCchhhHHHhcChHHHHHHHHhcCCCCCc-ccCcCC----chHHHHHHhcchhhhhhhhcccc--------------ch
Confidence 11334555556788877788865554332 233333 78888888888887777665111 11
Q ss_pred HHhHhccCCChhhHHHhhhhhcccccCCChhhhhhhhhhhhhhccCC-CHHHHHHH---------hhhhcccccCCCHHH
Q psy9003 458 ECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFG-TPEQLKYL---------VDECHKAGLFGTPEQ 527 (1276)
Q Consensus 458 ~~~~~~~~~~~~~~~~~v~~~~~a~~~~~~e~~~~lv~~~~~~~~~~-~~~~~~~~---------~t~~~~a~~~g~~e~ 527 (1276)
.-..+|.-+.-- -+..|-|--.|++|++|...+....+...- +..+.++. +|++|+|+.+|.+|.
T Consensus 214 r~~~in~~~n~~-----~~pLhlAve~g~~e~lk~~L~n~~~~a~~~~~~~~q~kelv~~~d~dg~tpLH~a~r~G~~~s 288 (929)
T KOG0510|consen 214 RQTHINFDNNEK-----ATPLHLAVEGGDIEMLKMCLQNGKKIADVQLDAMQQEKELVNDEDNDGCTPLHYAARQGGPES 288 (929)
T ss_pred hhcccccccCCC-----CcchhhhhhcCCHHHHHHHHhCccccchhhhHHHHHHHHHhhcccccCCchHHHHHHcCChhH
Confidence 111222100000 356777777888888777777666665322 33444453 999999999999999
Q ss_pred HHHHHhhhhhcCCCCCcchhhhhhhhhhccccCCCHHHHHHHHHhhhhcc---CCCChhhhhhhhhhhcccccCCCHHHH
Q psy9003 528 LKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAG---LFGTPEQLKYLVDECHKAGLFGTPEQL 604 (1276)
Q Consensus 528 ~~~lv~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~e~~ 604 (1276)
+-.|.+.+++||--+-+ .=|-.|-|-.-|++.-+.-|.+ |-| .|..|. ..-|..|=|...|+--.+
T Consensus 289 vd~Ll~~Ga~I~~kn~d-----~~spLH~AA~yg~~ntv~rLL~---~~~~rllne~D~---~g~tpLHlaa~~gH~~v~ 357 (929)
T KOG0510|consen 289 VDNLLGFGASINSKNKD-----EESPLHFAAIYGRINTVERLLQ---ESDTRLLNESDL---HGMTPLHLAAKSGHDRVV 357 (929)
T ss_pred HHHHHHcCCcccccCCC-----CCCchHHHHHcccHHHHHHHHh---CcCccccccccc---cCCCchhhhhhcCHHHHH
Confidence 99999999999944332 2344455669999999988887 333 333332 356777888899999999
Q ss_pred HHHHhhhhhccCCCChhhhhhhHHHhhhccCCCCHHHHHHHHHHHHhhcC
Q psy9003 605 KYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGL 654 (1276)
Q Consensus 605 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 654 (1276)
++|.+.++.-++.+ +-+++=-+|.|.|..+|..-.+.+|.-.-..+|+
T Consensus 358 qlLl~~GA~~~~~~--e~D~dg~TaLH~Aa~~g~~~av~~Li~~Ga~I~~ 405 (929)
T KOG0510|consen 358 QLLLNKGALFLNMS--EADSDGNTALHLAAKYGNTSAVQKLISHGADIGV 405 (929)
T ss_pred HHHHhcChhhhccc--ccccCCchhhhHHHHhccHHHHHHHHHcCCceee
Confidence 99999999887633 2245667889999999998888888765555443
|
|
| >cd02852 Isoamylase_N_term Isoamylase N-terminus domain | Back alignment and domain information |
|---|
Probab=98.54 E-value=2.2e-07 Score=92.25 Aligned_cols=54 Identities=17% Similarity=0.118 Sum_probs=46.3
Q ss_pred cceEecCCcEEEEEEccCCceEEEEeecc-CCCcc------e---------EEEEEccCccccceEEEEEec
Q psy9003 66 GIHVQADNSVRCFEWAPSAQQLYLTGNVS-LTPWS------I---------MEEASLSSIKLIQSIQYILTG 121 (1276)
Q Consensus 66 Gah~~~~gg~~f~~wAP~A~~v~l~gdfn-~~~w~------m---------~~~~~~~~~~~g~~yky~i~~ 121 (1276)
||+... +|++|++|||+|++|.|+. |+ |+++. | +|+++|+++..|+.|+|+|.+
T Consensus 1 Ga~~~~-~g~~F~vwAP~A~~V~L~l-f~~~~~~~~~~~~~m~~~~~~~~gvW~~~v~~~~~g~~Y~y~v~g 70 (119)
T cd02852 1 GATIDA-GGVNFSVYSSNATAVELLL-FDPGDGDEPALEIELDPSVNRTGDVWHVFVEGLKPGQLYGYRVDG 70 (119)
T ss_pred CCeEeC-CCEEEEEECCCCCEEEEEE-EeCCCCCCceEEEeCcCcccccCCEEEEEECCCCCCCEEEEEECC
Confidence 677665 5799999999999999999 85 54221 4 999999999999999999996
|
Isoamylase (aka glycogen 6-glucanohydrolase) is one of the starch-debranching enzymes that catalyzes the hydrolysis of alpha-1,6-glucosidic linkages specific in alpha-glucans such as amylopectin or glycogen. Isoamylase contains a bound calcium ion, but this is not in the same position as the conserved calcium ion that has been reported in other alpha-amylase family enzymes. The N-terminus of isoamylase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase. |
| >cd02861 E_set_proteins_like E or "early" set-like proteins | Back alignment and domain information |
|---|
Probab=98.50 E-value=1.9e-07 Score=87.06 Aligned_cols=47 Identities=13% Similarity=0.280 Sum_probs=40.0
Q ss_pred CcEEEEEEccCCceEEEEeecc-CCCcce------EEEEEccCccccc-eEEEEEe
Q psy9003 73 NSVRCFEWAPSAQQLYLTGNVS-LTPWSI------MEEASLSSIKLIQ-SIQYILT 120 (1276)
Q Consensus 73 gg~~f~~wAP~A~~v~l~gdfn-~~~w~m------~~~~~~~~~~~g~-~yky~i~ 120 (1276)
.-++|+.|||+|+.|+|+|+|| |+.+.| +|+++++ +++|+ .|||+|.
T Consensus 2 ~~vtf~~~ap~a~~V~v~G~fn~W~~~~m~~~~~G~w~~~~~-l~~G~y~Ykf~vd 56 (82)
T cd02861 2 VPVVFAYRGPEADSVYLAGSFNNWNAIPMEREGDGLWVVTVE-LRPGRYEYKFVVD 56 (82)
T ss_pred ccEEEEEECCCCCEEEEEeECCCCCcccCEECCCCcEEEEEe-CCCCcEEEEEEEC
Confidence 3589999999999999999996 655557 9999996 89999 7888774
|
These alpha amylase-like sugar utilizing enzymes which may be related to the immunoglobulin and/or fibronectin type III superfamilies are associated with different types of catalytic domains at either the N-terminal or C-terminal end. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase. |
| >cd02858 Esterase_N_term Esterase N-terminal domain | Back alignment and domain information |
|---|
Probab=98.45 E-value=3.3e-07 Score=86.25 Aligned_cols=58 Identities=12% Similarity=0.169 Sum_probs=42.6
Q ss_pred CCcEEEEEEccCCceEEEEeeccCCCcc---e------EEEEEccCccccc-eEEEEEecCCCCCCccccc
Q psy9003 72 DNSVRCFEWAPSAQQLYLTGNVSLTPWS---I------MEEASLSSIKLIQ-SIQYILTGVFGTPEQLKYL 132 (1276)
Q Consensus 72 ~gg~~f~~wAP~A~~v~l~gdfn~~~w~---m------~~~~~~~~~~~g~-~yky~i~~~~grp~~as~~ 132 (1276)
+++++|++|||+|++|.|+|+|| +|. | +|+++++.++.|. .|+|+|.+ ...|.-+|..
T Consensus 5 ~~~v~F~vwAP~A~~V~L~~~~~--~~~~~~m~~~~~G~W~~~v~~l~~g~Y~Y~~~vdg-~~~~DP~s~~ 72 (85)
T cd02858 5 DRTVTFRLFAPKANEVQVRGSWG--GAGSHPMTKDEAGVWSVTTGPLAPGIYTYSFLVDG-VRVIDPSNPT 72 (85)
T ss_pred CCcEEEEEECCCCCEEEEEeecC--CCccEeCeECCCeEEEEEECCCCCcEEEEEEEECC-eEecCCCCCc
Confidence 56899999999999999999994 555 6 9999997766552 45555543 2255555544
|
Esterases catalyze the hydrolysis of organic esters to release an alcohol or thiol and acid. The term can be applied to enzymes that hydrolyze carboxylate, phosphate and sulphate esters, but is more often restricted to the first class of substrate. The N-terminus of esterase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase. |
| >PHA02795 ankyrin-like protein; Provisional | Back alignment and domain information |
|---|
Probab=98.43 E-value=2.8e-07 Score=109.75 Aligned_cols=188 Identities=9% Similarity=-0.015 Sum_probs=138.2
Q ss_pred hccccCCHhHHHhhcccccccccCCChhhHHHHHHHHhHhccCCChhhHHHhhhhhccccc--CCChhhhhhhhhhhhhh
Q psy9003 423 KAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGL--FGTPEQLKYLVDECHKA 500 (1276)
Q Consensus 423 ~a~~~~~~~~~~yli~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~~~~~~~v~~~~~a~~--~~~~e~~~~lv~~~~~~ 500 (1276)
.||..++-|+++.||+-+.+...-.+|= ... + ..-|..|++.. .|++|-+++|++-++++
T Consensus 83 ~~~~~~~k~~~~~l~s~~~~~~~~~~~~---------~~~---~------~~~~~L~~~~~n~~n~~eiV~~LI~~GADI 144 (437)
T PHA02795 83 LFAYITYKDIISALVSKNYMEDIFSIII---------KNC---N------SVQDLLLYYLSNAYVEIDIVDFMVDHGAVI 144 (437)
T ss_pred HHhhcchHHHHHHHHhcccccchhhhhh---------hcc---c------cccHHHHHHHHhcCCCHHHHHHHHHCCCCC
Confidence 5777888999999988777644333220 000 0 01366777776 79999999999999999
Q ss_pred ccCCCHHHHHHHhhhhcccccCCCHHHHHHHHhhhhhcCCC-CCc--chhhhhhhhhhccccCCCHHHHHHHHHhhhhcc
Q psy9003 501 GLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLF-GTP--EQLKYLVDECHKAGLFGTPEQLKYLVDECHKAG 577 (1276)
Q Consensus 501 ~~~~~~~~~~~~~t~~~~a~~~g~~e~~~~lv~~~~~~~~~-~t~--~~l~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~ 577 (1276)
|.+.. .|+.+.|...|+.|++++|...++.+... .++ ..+.| +..+.+-..+..|.+++|+..++++|
T Consensus 145 n~~~~-------~t~lh~A~~~~~~eIVk~Lls~Ga~~~n~~~~~l~~~~~~--t~l~~a~~~~~~eIve~LIs~GADIN 215 (437)
T PHA02795 145 YKIEC-------LNAYFRGICKKESSVVEFILNCGIPDENDVKLDLYKIIQY--TRGFLVDEPTVLEIYKLCIPYIEDIN 215 (437)
T ss_pred CCCCC-------CCHHHHHHHcCcHHHHHHHHhcCCcccccccchhhhhhcc--chhHHHHhcCHHHHHHHHHhCcCCcC
Confidence 97544 68899999999999999999988754221 111 01222 34455667889999999999999999
Q ss_pred CCCChhhhhhhhhhhcccccCCCHHHHHHHHhhhhhccCCCChhhhhhhHHHhhhccCCCC--------HHHHHHHHH
Q psy9003 578 LFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGT--------PEQLKYLVD 647 (1276)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~ 647 (1276)
...... .|..+-|...|+.|.+++|+..++++|.+-..- .++.|.|...|+ .|.++.|+.
T Consensus 216 ~kD~~G-----~TpLh~Aa~~g~~eiVelLL~~GAdIN~~d~~G-----~TpLh~Aa~~g~~~~~~~~~~eIvelLL~ 283 (437)
T PHA02795 216 QLDAGG-----RTLLYRAIYAGYIDLVSWLLENGANVNAVMSNG-----YTCLDVAVDRGSVIARRETHLKILEILLR 283 (437)
T ss_pred cCCCCC-----CCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCC-----CCHHHHHHHcCCcccccccHHHHHHHHHh
Confidence 443333 455555668899999999999999998876655 788888888784 688888875
|
|
| >PHA02859 ankyrin repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=98.37 E-value=3.9e-07 Score=98.58 Aligned_cols=160 Identities=13% Similarity=-0.054 Sum_probs=111.1
Q ss_pred cccchhccccCCHhHHHhhcccccccccCCChhhHHHHHHHHhHhccCCChhhHHHhhhhhcccccC--CChhhhhhhhh
Q psy9003 418 VDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLF--GTPEQLKYLVD 495 (1276)
Q Consensus 418 vt~lh~a~~~~~~~~~~yli~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~~~~~~~v~~~~~a~~~--~~~e~~~~lv~ 495 (1276)
.||||.|+..|++++||+||.. . +..+... .|..|.|..+ ++.|.+++|++
T Consensus 22 ~~pL~~A~~~~~~~~vk~Li~~---~-------------------n~~~~~g-----~TpLh~a~~~~~~~~eiv~~Ll~ 74 (209)
T PHA02859 22 CNPLFYYVEKDDIEGVKKWIKF---V-------------------NDCNDLY-----ETPIFSCLEKDKVNVEILKFLIE 74 (209)
T ss_pred CcHHHHHHHhCcHHHHHHHHHh---h-------------------hccCccC-----CCHHHHHHHcCCCCHHHHHHHHH
Confidence 4999999999999999999842 0 1001111 4667777654 48999999999
Q ss_pred hhhhhccCCCHHHHHHHhhhhcccc---cCCCHHHHHHHHhhhhhcCCCCCcchhhhhhhhhhcccc--CCCHHHHHHHH
Q psy9003 496 ECHKAGLFGTPEQLKYLVDECHKAG---LFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGL--FGTPEQLKYLV 570 (1276)
Q Consensus 496 ~~~~~~~~~~~~~~~~~~t~~~~a~---~~g~~e~~~~lv~~~~~~~~~~t~~~l~~~~~~~~~~~~--~~~~e~~~~l~ 570 (1276)
.++++|..... ...|+.|.|+ ..|+.|++++|++.++++|..+. +..|..+.|+. .+.+|.+++|+
T Consensus 75 ~gadvn~~~~~----~g~TpLh~a~~~~~~~~~eiv~~Ll~~gadin~~d~-----~G~TpLh~a~~~~~~~~~iv~~Li 145 (209)
T PHA02859 75 NGADVNFKTRD----NNLSALHHYLSFNKNVEPEILKILIDSGSSITEEDE-----DGKNLLHMYMCNFNVRINVIKLLI 145 (209)
T ss_pred CCCCCCccCCC----CCCCHHHHHHHhCccccHHHHHHHHHCCCCCCCcCC-----CCCCHHHHHHHhccCCHHHHHHHH
Confidence 99999875420 2245555543 24689999999999999885544 23333443333 57899999999
Q ss_pred HhhhhccC--CCChhhhhhhhhhhcccccCCCHHHHHHHHhhhhhccCCCC
Q psy9003 571 DECHKAGL--FGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGT 619 (1276)
Q Consensus 571 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~ 619 (1276)
+.++++|. ....+.++..+ ..+|+.|.+++|++.+++++.+-.
T Consensus 146 ~~gadin~~d~~g~t~Lh~~a------~~~~~~~iv~~Ll~~Gadi~~~d~ 190 (209)
T PHA02859 146 DSGVSFLNKDFDNNNILYSYI------LFHSDKKIFDFLTSLGIDINETNK 190 (209)
T ss_pred HcCCCcccccCCCCcHHHHHH------HhcCCHHHHHHHHHcCCCCCCCCC
Confidence 99999983 33334343211 246899999999999998876543
|
|
| >PLN03192 Voltage-dependent potassium channel; Provisional | Back alignment and domain information |
|---|
Probab=98.33 E-value=4.7e-07 Score=116.20 Aligned_cols=151 Identities=11% Similarity=-0.029 Sum_probs=84.8
Q ss_pred cccCCChhHHHHHhhhcccccCCCChhhhhcccccchhccccCCHhHHHhhcccccccccCCChhhHHHHHHHHhHhccC
Q psy9003 386 AGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLF 465 (1276)
Q Consensus 386 a~~~~~id~vkyLi~~~h~~~~~~~~~~~~~~vt~lh~a~~~~~~~~~~yli~~~~~~~~~~~~e~l~~l~~~~~~~~~~ 465 (1276)
|+..|+.++++.|++. .+++-..+.++. ||||.|+..|+.++|++|+..+ |+....+.+.
T Consensus 532 Aa~~g~~~~l~~Ll~~-G~d~n~~d~~G~----TpLh~Aa~~g~~~~v~~Ll~~g-adin~~d~~G-------------- 591 (823)
T PLN03192 532 VASTGNAALLEELLKA-KLDPDIGDSKGR----TPLHIAASKGYEDCVLVLLKHA-CNVHIRDANG-------------- 591 (823)
T ss_pred HHHcCCHHHHHHHHHC-CCCCCCCCCCCC----CHHHHHHHcChHHHHHHHHhcC-CCCCCcCCCC--------------
Confidence 4446788888888854 556767777787 8888888888888888887643 3322222222
Q ss_pred CChhhHHHhhhhhcccccCCChhhhhhhhhhhhhhccCCCHHHHHHHhhhhcccccCCCHHHHHHHHhhhhhcCCCCCcc
Q psy9003 466 GTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPE 545 (1276)
Q Consensus 466 ~~~~~~~~~v~~~~~a~~~~~~e~~~~lv~~~~~~~~~~~~~~~~~~~t~~~~a~~~g~~e~~~~lv~~~~~~~~~~t~~ 545 (1276)
.|..|.|...|+.+.+++|+..++..+.... -+..+.|...|+++.+++|++.++++|..+.
T Consensus 592 ---------~TpL~~A~~~g~~~iv~~L~~~~~~~~~~~~-------~~~L~~Aa~~g~~~~v~~Ll~~Gadin~~d~-- 653 (823)
T PLN03192 592 ---------NTALWNAISAKHHKIFRILYHFASISDPHAA-------GDLLCTAAKRNDLTAMKELLKQGLNVDSEDH-- 653 (823)
T ss_pred ---------CCHHHHHHHhCCHHHHHHHHhcCcccCcccC-------chHHHHHHHhCCHHHHHHHHHCCCCCCCCCC--
Confidence 3455555555555555555543332221111 1234445555666666666655555553333
Q ss_pred hhhhhhhhhhccccCCCHHHHHHHHHhhhhcc
Q psy9003 546 QLKYLVDECHKAGLFGTPEQLKYLVDECHKAG 577 (1276)
Q Consensus 546 ~l~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~ 577 (1276)
..-|..|.|..+|+.|.+++|++.+++++
T Consensus 654 ---~G~TpLh~A~~~g~~~iv~~Ll~~GAdv~ 682 (823)
T PLN03192 654 ---QGATALQVAMAEDHVDMVRLLIMNGADVD 682 (823)
T ss_pred ---CCCCHHHHHHHCCcHHHHHHHHHcCCCCC
Confidence 23334444445555555555555555554
|
|
| >PHA02859 ankyrin repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=98.24 E-value=1e-06 Score=95.46 Aligned_cols=148 Identities=12% Similarity=-0.081 Sum_probs=99.4
Q ss_pred CCChhHHHHHhhhcccccCCCChhhhhcccccchhcccc--CCHhHHHhhcccccccccCCChhhHHHHHHHHhHhccCC
Q psy9003 389 FGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLF--GTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFG 466 (1276)
Q Consensus 389 ~~~id~vkyLi~~~h~~~~~~~~~~~~~~vt~lh~a~~~--~~~~~~~yli~~~~~~~~~~~~e~l~~l~~~~~~~~~~~ 466 (1276)
.|+++.|++|+.. . -..+..+. ||||.|+.. ++.+++++||..+--.....+..
T Consensus 31 ~~~~~~vk~Li~~---~-n~~~~~g~----TpLh~a~~~~~~~~eiv~~Ll~~gadvn~~~~~~---------------- 86 (209)
T PHA02859 31 KDDIEGVKKWIKF---V-NDCNDLYE----TPIFSCLEKDKVNVEILKFLIENGADVNFKTRDN---------------- 86 (209)
T ss_pred hCcHHHHHHHHHh---h-hccCccCC----CHHHHHHHcCCCCHHHHHHHHHCCCCCCccCCCC----------------
Confidence 6888888888852 1 12345566 999999753 47899999886542221111111
Q ss_pred ChhhHHHhhhhhcccc---cCCChhhhhhhhhhhhhhccCCCHHHHHHHhhhhccccc--CCCHHHHHHHHhhhhhcCCC
Q psy9003 467 TPEQLKYLVDECHKAG---LFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGL--FGTPEQLKYLVDECHKAGLF 541 (1276)
Q Consensus 467 ~~~~~~~~v~~~~~a~---~~~~~e~~~~lv~~~~~~~~~~~~~~~~~~~t~~~~a~~--~g~~e~~~~lv~~~~~~~~~ 541 (1276)
. .|..|.|. ..++.|.+++|++.++++|.+.. ...|+.+.|+. .+.+|++++|+..+.++|..
T Consensus 87 --g-----~TpLh~a~~~~~~~~~eiv~~Ll~~gadin~~d~-----~G~TpLh~a~~~~~~~~~iv~~Li~~gadin~~ 154 (209)
T PHA02859 87 --N-----LSALHHYLSFNKNVEPEILKILIDSGSSITEEDE-----DGKNLLHMYMCNFNVRINVIKLLIDSGVSFLNK 154 (209)
T ss_pred --C-----CCHHHHHHHhCccccHHHHHHHHHCCCCCCCcCC-----CCCCHHHHHHHhccCCHHHHHHHHHcCCCcccc
Confidence 1 34444433 23578899999999999887664 33566666554 57899999999999998865
Q ss_pred CCcchhhhhhhhhhc-cccCCCHHHHHHHHHhhhhcc
Q psy9003 542 GTPEQLKYLVDECHK-AGLFGTPEQLKYLVDECHKAG 577 (1276)
Q Consensus 542 ~t~~~l~~~~~~~~~-~~~~~~~e~~~~l~~~~~~~~ 577 (1276)
+.. .-|-.|. +..+|+.|.+++|++.+++++
T Consensus 155 d~~-----g~t~Lh~~a~~~~~~~iv~~Ll~~Gadi~ 186 (209)
T PHA02859 155 DFD-----NNNILYSYILFHSDKKIFDFLTSLGIDIN 186 (209)
T ss_pred cCC-----CCcHHHHHHHhcCCHHHHHHHHHcCCCCC
Confidence 552 2233332 234789999999999999888
|
|
| >PLN03192 Voltage-dependent potassium channel; Provisional | Back alignment and domain information |
|---|
Probab=98.22 E-value=1.1e-06 Score=112.84 Aligned_cols=159 Identities=10% Similarity=-0.031 Sum_probs=124.2
Q ss_pred ccchhccccCCHhHHHhhcccccccccCCChhhHHHHHHHHhHhccCCChhhHHHhhhhhcccccCCChhhhhhhhhhhh
Q psy9003 419 DECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECH 498 (1276)
Q Consensus 419 t~lh~a~~~~~~~~~~yli~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~~~~~~~v~~~~~a~~~~~~e~~~~lv~~~~ 498 (1276)
++||.||..|+.++++.|++.+ +++...+.+. -|..|.|..+|..|-+++|++.+.
T Consensus 527 ~~L~~Aa~~g~~~~l~~Ll~~G-~d~n~~d~~G-----------------------~TpLh~Aa~~g~~~~v~~Ll~~ga 582 (823)
T PLN03192 527 SNLLTVASTGNAALLEELLKAK-LDPDIGDSKG-----------------------RTPLHIAASKGYEDCVLVLLKHAC 582 (823)
T ss_pred hHHHHHHHcCCHHHHHHHHHCC-CCCCCCCCCC-----------------------CCHHHHHHHcChHHHHHHHHhcCC
Confidence 8899999999999999999654 3333333222 578899999999999999999888
Q ss_pred hhccCCCHHHHHHHhhhhcccccCCCHHHHHHHHhhhhhcCCCCCcchhhhhhhhhhccccCCCHHHHHHHHHhhhhccC
Q psy9003 499 KAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGL 578 (1276)
Q Consensus 499 ~~~~~~~~~~~~~~~t~~~~a~~~g~~e~~~~lv~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~ 578 (1276)
++|.+.. ...|+.+.|+..|+.+++++|+..++..+..+.. +-.+.|...|+++.+++|++.++++|.
T Consensus 583 din~~d~-----~G~TpL~~A~~~g~~~iv~~L~~~~~~~~~~~~~-------~~L~~Aa~~g~~~~v~~Ll~~Gadin~ 650 (823)
T PLN03192 583 NVHIRDA-----NGNTALWNAISAKHHKIFRILYHFASISDPHAAG-------DLLCTAAKRNDLTAMKELLKQGLNVDS 650 (823)
T ss_pred CCCCcCC-----CCCCHHHHHHHhCCHHHHHHHHhcCcccCcccCc-------hHHHHHHHhCCHHHHHHHHHCCCCCCC
Confidence 8887664 4578999999999999999999766544432221 335667799999999999999999884
Q ss_pred CCChhhhhhhhhhhcccccCCCHHHHHHHHhhhhhccCCC
Q psy9003 579 FGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFG 618 (1276)
Q Consensus 579 ~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~ 618 (1276)
...+. .|..+-|..+|+.|.+++|++.+++.+...
T Consensus 651 ~d~~G-----~TpLh~A~~~g~~~iv~~Ll~~GAdv~~~~ 685 (823)
T PLN03192 651 EDHQG-----ATALQVAMAEDHVDMVRLLIMNGADVDKAN 685 (823)
T ss_pred CCCCC-----CCHHHHHHHCCcHHHHHHHHHcCCCCCCCC
Confidence 43332 566677778999999999999999886654
|
|
| >PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function | Back alignment and domain information |
|---|
Probab=98.19 E-value=1.2e-05 Score=92.56 Aligned_cols=138 Identities=18% Similarity=0.263 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHHHcCCEEEEEEeccccCCcccCCCcCCCCCCCcccc-cCCCCCCC----CCCCcCCCCCcHHHHHHHHH
Q psy9003 1036 PEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFH-DGPRGTHP----LWDSRLFNYSEIEVLRFLLS 1110 (1276)
Q Consensus 1036 ~eEfK~LV~alHk~GI~VILDvV~NHt~~~~~~~~~~f~g~~~~Yy~-~~~~g~~~----~W~g~~LN~~np~Vr~~Iid 1110 (1276)
-+-|+.||++||++||+|.-=+.++...... .......+.++. ..++.... ..+..-||..+|+||+||++
T Consensus 69 ~DpL~~~I~eaHkrGlevHAW~~~~~~~~~~----~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~lnP~~PeVr~~i~~ 144 (311)
T PF02638_consen 69 FDPLEFMIEEAHKRGLEVHAWFRVGFNAPDV----SHILKKHPEWFAVNHPGWVRTYEDANGGYYWLNPGHPEVRDYIID 144 (311)
T ss_pred ccHHHHHHHHHHHcCCEEEEEEEeecCCCch----hhhhhcCchhheecCCCceeecccCCCCceEECCCCHHHHHHHHH
Confidence 4679999999999999998877554332211 111112233322 11111100 01123589999999999999
Q ss_pred HHHHHHHhCCCcEEccCCccccccccCCCCCCCCC--CCccccCC-----CCC-------c-hHHHHHHHHHHHHHhhCC
Q psy9003 1111 NLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSG--HYDEYFGL-----NVD-------T-DALIYLMVANKFLHDKYP 1175 (1276)
Q Consensus 1111 sl~~Wv~eygVDGFRfD~a~~L~~~d~g~g~~~~~--~~~~~~~~-----~~d-------~-~a~~Fl~el~~~Vr~~~P 1175 (1276)
.++-.++.|.|||+.||-.- |.....|.++.. .+.++.+. ..+ . .--.|.+++.+.||+.+|
T Consensus 145 ~v~Eiv~~YdvDGIhlDdy~---yp~~~~g~~~~~~~~y~~~~g~~~~~~~~d~~W~~WRr~~I~~~V~~i~~~ik~~kP 221 (311)
T PF02638_consen 145 IVKEIVKNYDVDGIHLDDYF---YPPPSFGYDFPDVAAYEKYTGKDPFSSPEDDAWTQWRRDNINNFVKRIYDAIKAIKP 221 (311)
T ss_pred HHHHHHhcCCCCeEEecccc---cccccCCCCCccHHHHHHhcCcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 99999999999999999321 211111111100 01112110 111 0 112477889999999999
Q ss_pred CeEEE
Q psy9003 1176 EIITI 1180 (1276)
Q Consensus 1176 dvilI 1180 (1276)
++.+=
T Consensus 222 ~v~~s 226 (311)
T PF02638_consen 222 WVKFS 226 (311)
T ss_pred CCeEE
Confidence 97663
|
|
| >KOG0509|consensus | Back alignment and domain information |
|---|
Probab=98.16 E-value=2.7e-06 Score=103.01 Aligned_cols=188 Identities=18% Similarity=0.070 Sum_probs=124.1
Q ss_pred hhhhhcccccCCChHHHHHHHhhhhccCCCCCccccchhhhhhcccccCCCHHHHHHHhhhhhccCCCCcccchhhhhcc
Q psy9003 265 LVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDE 344 (1276)
Q Consensus 265 li~~~h~~~~~~~ie~~~yli~e~~~~~~~~~~~~~t~~~~~~~~a~~~gsi~~l~~Lv~~~~~~~~~~~~~~~~~~~~~ 344 (1276)
+...-++|...|.+|.||-|++-=..+.-.++. -+.+.+|=|+.+..+++++|||+++-.+|-..+ .-..|+
T Consensus 44 ~~~~~v~A~q~G~l~~v~~lve~~g~~v~~~D~----~g~tlLHWAAiNNrl~v~r~li~~gadvn~~gG----~l~stP 115 (600)
T KOG0509|consen 44 SLDDIVKATQYGELETVKELVESEGESVNNPDR----EGVTLLHWAAINNRLDVARYLISHGADVNAIGG----VLGSTP 115 (600)
T ss_pred hhhhhhhHhhcchHHHHHHHHhhcCcCCCCCCc----CCccceeHHHHcCcHHHHHHHHHcCCCccccCC----CCCCCc
Confidence 334444555556677777777631233333333 345566889999999999999998765553322 123588
Q ss_pred ccccccCCChhhhHHhhhhhccccC-CCChhhHHHHHhhhcccccCCChhHHHHHhhhcccccCCCChhhhhcccccchh
Q psy9003 345 CHKAGLFGTPEQLKYLVDECHKAGL-FGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHK 423 (1276)
Q Consensus 345 ~~~a~~~g~ie~~~yLi~~~h~~~~-~~~~e~~~~~~~~~~~a~~~~~id~vkyLi~~~h~~~~~~~~~~~~~~vt~lh~ 423 (1276)
.|+|+++||+-+|.+|+.......+ +...-...|+.. ..|++=+|.||+-.- =|+-..|++|+ ||||.
T Consensus 116 LHWAar~G~~~vv~lLlqhGAdpt~~D~~G~~~lHla~------~~~~~~~vayll~~~-~d~d~~D~~gr----TpLmw 184 (600)
T KOG0509|consen 116 LHWAARNGHISVVDLLLQHGADPTLKDKQGLTPLHLAA------QFGHTALVAYLLSKG-ADIDLRDNNGR----TPLMW 184 (600)
T ss_pred chHHHHcCcHHHHHHHHHcCCCCceecCCCCcHHHHHH------HhCchHHHHHHHHhc-ccCCCcCCCCC----CHHHH
Confidence 9999999999999999988875553 444444444443 358999999999777 56667788899 99999
Q ss_pred ccccCCHhHHHhhcccccccccCCChhhHHHHHHHHhHhccCCChhhHHHhhhhhcccccCCChhhhhhhh
Q psy9003 424 AGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLV 494 (1276)
Q Consensus 424 a~~~~~~~~~~yli~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~~~~~~~v~~~~~a~~~~~~e~~~~lv 494 (1276)
||.+|.-+.+..|+.=+.=-.+..++++ -|..|.|.+.|.++-+++|+
T Consensus 185 Aaykg~~~~v~~LL~f~a~~~~~d~~~g-----------------------~TpLHwa~~~gN~~~v~Ll~ 232 (600)
T KOG0509|consen 185 AAYKGFALFVRRLLKFGASLLLTDDNHG-----------------------NTPLHWAVVGGNLTAVKLLL 232 (600)
T ss_pred HHHhcccHHHHHHHHhcccccccccccC-----------------------CchHHHHHhcCCcceEehhh
Confidence 9988776644444333322222222232 46677777777777766333
|
|
| >KOG0509|consensus | Back alignment and domain information |
|---|
Probab=97.94 E-value=6.1e-06 Score=100.08 Aligned_cols=191 Identities=18% Similarity=0.110 Sum_probs=133.4
Q ss_pred HhhhcccccCCChhHHHHHhhhcccccCCCChhhhhcccccchhccccCCHhHHHhhcccccccccCCChhhHHHHHHHH
Q psy9003 380 VDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDEC 459 (1276)
Q Consensus 380 ~~~~~~a~~~~~id~vkyLi~~~h~~~~~~~~~~~~~~vt~lh~a~~~~~~~~~~yli~~~~~~~~~~~~e~l~~l~~~~ 459 (1276)
.+.--+|...|.++.||-||+--..+.-++|.++. |.||-||.++..||++|||+-+- ++++
T Consensus 45 ~~~~v~A~q~G~l~~v~~lve~~g~~v~~~D~~g~----tlLHWAAiNNrl~v~r~li~~ga------dvn~-------- 106 (600)
T KOG0509|consen 45 LDDIVKATQYGELETVKELVESEGESVNNPDREGV----TLLHWAAINNRLDVARYLISHGA------DVNA-------- 106 (600)
T ss_pred hhhhhhHhhcchHHHHHHHHhhcCcCCCCCCcCCc----cceeHHHHcCcHHHHHHHHHcCC------Cccc--------
Confidence 34444555578999999999765777888888888 99999999999999999986432 1111
Q ss_pred hHhccCCChhhHHHhhhhhcccccCCChhhhhhhhhhhhhhccCCCHHHHHHHhhhhcccccCCCHHHHHHHHhhhhhcC
Q psy9003 460 HKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAG 539 (1276)
Q Consensus 460 ~~~~~~~~~~~~~~~v~~~~~a~~~~~~e~~~~lv~~~~~~~~~~~~~~~~~~~t~~~~a~~~g~~e~~~~lv~~~~~~~ 539 (1276)
+-+... =|+.|-|..+|++--+.+|+.-+++.+.++- ..+++.|=|...|++-.++||+...++++
T Consensus 107 ----~gG~l~-----stPLHWAar~G~~~vv~lLlqhGAdpt~~D~-----~G~~~lHla~~~~~~~~vayll~~~~d~d 172 (600)
T KOG0509|consen 107 ----IGGVLG-----STPLHWAARNGHISVVDLLLQHGADPTLKDK-----QGLTPLHLAAQFGHTALVAYLLSKGADID 172 (600)
T ss_pred ----cCCCCC-----CCcchHHHHcCcHHHHHHHHHcCCCCceecC-----CCCcHHHHHHHhCchHHHHHHHHhcccCC
Confidence 000011 2677888888888888888888888876664 45678888888888888888888888877
Q ss_pred CCCCcchhhhhhhhhhccccCCCHHHHHHHHHhhhhccCCC-ChhhhhhhhhhhcccccCCCHHHHHHHHhhhh
Q psy9003 540 LFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFG-TPEQLKYLVDECHKAGLFGTPEQLKYLVDECH 612 (1276)
Q Consensus 540 ~~~t~~~l~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~ 612 (1276)
+-+. ..=|..+-|--+|.-.-+..|...++.++..+ +.- +|+.|=|.+-|+++.+++|++.++
T Consensus 173 ~~D~-----~grTpLmwAaykg~~~~v~~LL~f~a~~~~~d~~~g-----~TpLHwa~~~gN~~~v~Ll~~g~~ 236 (600)
T KOG0509|consen 173 LRDN-----NGRTPLMWAAYKGFALFVRRLLKFGASLLLTDDNHG-----NTPLHWAVVGGNLTAVKLLLEGGA 236 (600)
T ss_pred CcCC-----CCCCHHHHHHHhcccHHHHHHHHhcccccccccccC-----CchHHHHHhcCCcceEehhhhcCC
Confidence 6666 33334444445554444777777777776443 444 777777888888888885555544
|
|
| >TIGR00870 trp transient-receptor-potential calcium channel protein | Back alignment and domain information |
|---|
Probab=97.94 E-value=1.7e-05 Score=100.77 Aligned_cols=180 Identities=13% Similarity=-0.048 Sum_probs=108.8
Q ss_pred cccCCChhHHHHHhhhcccccCC-CChhhhhcccccch-hccccCCHhHHHhhcccccccccCCChhhHHHHHHHHhHhc
Q psy9003 386 AGLFGTPEQLKYLVDECHKAGLF-GTPEQLKYLVDECH-KAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAG 463 (1276)
Q Consensus 386 a~~~~~id~vkyLi~~~h~~~~~-~~~~~~~~~vt~lh-~a~~~~~~~~~~yli~~~~~~~~~~~~e~l~~l~~~~~~~~ 463 (1276)
|+..|+++.|+.|++.....+++ .+..+. |+|| .|+..++.++++.|++.+. .+...-+.|.-++.
T Consensus 24 A~~~g~~~~v~~lL~~~~~~~in~~d~~G~----t~Lh~~A~~~~~~eiv~lLl~~g~-----~~~~G~T~Lh~A~~--- 91 (743)
T TIGR00870 24 AAERGDLASVYRDLEEPKKLNINCPDRLGR----SALFVAAIENENLELTELLLNLSC-----RGAVGDTLLHAISL--- 91 (743)
T ss_pred HHHcCCHHHHHHHhccccccCCCCcCccch----hHHHHHHHhcChHHHHHHHHhCCC-----CCCcChHHHHHHHh---
Confidence 33468888888888764444444 456677 9999 7778888999999988765 12223234433322
Q ss_pred cCCChhhHHHhhhhhcccccCCChhhhhhhhhhhhhhccCCCHHHHHHHhhhhcccccCCCHHHHHHHHhhhhhcCCCCC
Q psy9003 464 LFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGT 543 (1276)
Q Consensus 464 ~~~~~~~~~~~v~~~~~a~~~~~~e~~~~lv~~~~~~~~~~~~~~~~~~~t~~~~a~~~g~~e~~~~lv~~~~~~~~~~t 543 (1276)
+..+.++.++.....+...+... ..++...+ .......|+.|.|+..|+.|++|+|++.++++|....
T Consensus 92 --~~~~~v~~ll~~l~~~~~~~~~~---------~~~~~~~~-~~~~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~~ 159 (743)
T TIGR00870 92 --EYVDAVEAILLHLLAAFRKSGPL---------ELANDQYT-SEFTPGITALHLAAHRQNYEIVKLLLERGASVPARAC 159 (743)
T ss_pred --ccHHHHHHHHHHHhhcccccCch---------hhhccccc-cccCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCcC
Confidence 11122222221111111000000 00111000 0011347999999999999999999999999984322
Q ss_pred c---------chhhhhhhhhhccccCCCHHHHHHHHHhhhhcc--CCCChhhhhhhh
Q psy9003 544 P---------EQLKYLVDECHKAGLFGTPEQLKYLVDECHKAG--LFGTPEQLKYLV 589 (1276)
Q Consensus 544 ~---------~~l~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~--~~~~~~~~~~~~ 589 (1276)
. +.+.+.-+-.+.|...|+.+.+++|++.++++| .+.+.+.+++.+
T Consensus 160 ~~~~~~~~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~gadin~~d~~g~T~Lh~A~ 216 (743)
T TIGR00870 160 GDFFVKSQGVDSFYHGESPLNAAACLGSPSIVALLSEDPADILTADSLGNTLLHLLV 216 (743)
T ss_pred CchhhcCCCCCcccccccHHHHHHHhCCHHHHHHHhcCCcchhhHhhhhhHHHHHHH
Confidence 1 244566677788888999999999999999888 444556666544
|
after chronic exposure to capsaicin. (McCleskey and Gold, 1999). |
| >cd02688 E_set E or "early" set of sugar utilizing enzymes which may be related to the immunoglobulin and/or fibronectin type III superfamilies | Back alignment and domain information |
|---|
Probab=97.90 E-value=3e-05 Score=70.31 Aligned_cols=50 Identities=24% Similarity=0.247 Sum_probs=43.8
Q ss_pred CcEEEEEEccCCceEEEEeeccCCC-cc---e------EEEEEccCcc-ccceEEEEEecCCC
Q psy9003 73 NSVRCFEWAPSAQQLYLTGNVSLTP-WS---I------MEEASLSSIK-LIQSIQYILTGVFG 124 (1276)
Q Consensus 73 gg~~f~~wAP~A~~v~l~gdfn~~~-w~---m------~~~~~~~~~~-~g~~yky~i~~~~g 124 (1276)
++++|++|||+|+.|.|.++|| + |. | +|++.++... .|..|+|++.+..+
T Consensus 4 ~~v~f~v~ap~a~~v~l~~~~~--~~~~~~~~~~~~~g~w~~~v~~~~~~~~~Y~~~v~~~~~ 64 (83)
T cd02688 4 KGVTFTVRGPKAQRVSLAGSFN--GDTQLIPMTKVEDGYWEVELPLPSPGKYQYKYVLDGGKG 64 (83)
T ss_pred ccEEEEEECCCCCEEEEEEEEC--CCCCcccCEECCCceEEEEEcCCCCCCeEEEEEEeCCCC
Confidence 3799999999999999999995 4 22 5 8999999988 89999999997765
|
These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase. |
| >cd02688 E_set E or "early" set of sugar utilizing enzymes which may be related to the immunoglobulin and/or fibronectin type III superfamilies | Back alignment and domain information |
|---|
Probab=97.88 E-value=3.6e-05 Score=69.79 Aligned_cols=58 Identities=24% Similarity=0.206 Sum_probs=48.3
Q ss_pred CceEEEEEccCCcEEEEEccCCCCccccccceecCCCeEEEEcCCCCCCCcccCcccEEEEEEEE
Q psy9003 780 DECHKAGLLCFMHVVCAAGDFNNWNREEFAYKKLDFGKWELVLPPNPDGSCKLTHLSQVKLVVRN 844 (1276)
Q Consensus 780 D~a~FalwAP~A~~VsLvGDFN~wd~~~~pM~r~~~GVWsl~Ip~~~~G~~~i~hGs~YkYrV~~ 844 (1276)
.+++|++|||.|++|+|+++|++| ...++|.+...|+|++.++... +.+..|+|++.+
T Consensus 4 ~~v~f~v~ap~a~~v~l~~~~~~~-~~~~~~~~~~~g~w~~~v~~~~------~~~~~Y~~~v~~ 61 (83)
T cd02688 4 KGVTFTVRGPKAQRVSLAGSFNGD-TQLIPMTKVEDGYWEVELPLPS------PGKYQYKYVLDG 61 (83)
T ss_pred ccEEEEEECCCCCEEEEEEEECCC-CCcccCEECCCceEEEEEcCCC------CCCeEEEEEEeC
Confidence 468999999999999999888774 3578999888899999998764 135799999964
|
These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase. |
| >TIGR00870 trp transient-receptor-potential calcium channel protein | Back alignment and domain information |
|---|
Probab=97.87 E-value=4.2e-05 Score=97.25 Aligned_cols=250 Identities=12% Similarity=-0.080 Sum_probs=142.6
Q ss_pred cchhhhhhcccccCCCHHHHHHHhhhhhccCCCCcccchhhhhcccc-ccccCCChhhhHHhhhhhccccCCCChhhHHH
Q psy9003 300 LKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECH-KAGLFGTPEQLKYLVDECHKAGLFGTPEQLKY 378 (1276)
Q Consensus 300 ~t~~~~~~~~a~~~gsi~~l~~Lv~~~~~~~~~~~~~~~~~~~~~~~-~a~~~g~ie~~~yLi~~~h~~~~~~~~e~~~~ 378 (1276)
.+-......+|+..|+++.++.|++.....++|.+|... .|+.| .|+..++.|++++|++... .+...+...+
T Consensus 14 ~~~~~~~~l~A~~~g~~~~v~~lL~~~~~~~in~~d~~G---~t~Lh~~A~~~~~~eiv~lLl~~g~---~~~~G~T~Lh 87 (743)
T TIGR00870 14 LSDEEKAFLPAAERGDLASVYRDLEEPKKLNINCPDRLG---RSALFVAAIENENLELTELLLNLSC---RGAVGDTLLH 87 (743)
T ss_pred CCHHHHHHHHHHHcCCHHHHHHHhccccccCCCCcCccc---hhHHHHHHHhcChHHHHHHHHhCCC---CCCcChHHHH
Confidence 444566777888899999999998875555666555333 34556 6667788999999987654 3344555555
Q ss_pred HHhhhcccccCCChhHHHHHhhhccc--------ccCC-CChhhhhcccccchhccccCCHhHHHhhcccccccccCCCh
Q psy9003 379 LVDECHKAGLFGTPEQLKYLVDECHK--------AGLF-GTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTP 449 (1276)
Q Consensus 379 ~~~~~~~a~~~~~id~vkyLi~~~h~--------~~~~-~~~~~~~~~vt~lh~a~~~~~~~~~~yli~~~~~~~~~~~~ 449 (1276)
.+... ...+.-+++++|.+.... ++.. ....+. ||||.|+.+|+.++|++|++.+........
T Consensus 88 ~A~~~---~~~~v~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~G~----TpLhlAa~~~~~eiVklLL~~GAdv~~~~~- 159 (743)
T TIGR00870 88 AISLE---YVDAVEAILLHLLAAFRKSGPLELANDQYTSEFTPGI----TALHLAAHRQNYEIVKLLLERGASVPARAC- 159 (743)
T ss_pred HHHhc---cHHHHHHHHHHHhhcccccCchhhhccccccccCCCC----cHHHHHHHhCCHHHHHHHHhCCCCCCcCcC-
Confidence 44321 012233445555432211 1111 112344 999999999999999999986533321100
Q ss_pred hhHHHHHHHHhHhccCCChhhHHHhhhhhcccccCCChhhhhhhhhhhhhhccCCCHHHHHHHhhhhcccccCC-----C
Q psy9003 450 EQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFG-----T 524 (1276)
Q Consensus 450 e~l~~l~~~~~~~~~~~~~~~~~~~v~~~~~a~~~~~~e~~~~lv~~~~~~~~~~~~~~~~~~~t~~~~a~~~g-----~ 524 (1276)
.+.+.+ ....+.+.+--+..|.|...|+.+.+++|++..+++|...+ ...|..|-|...+ .
T Consensus 160 ------~~~~~~---~~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~gadin~~d~-----~g~T~Lh~A~~~~~~~~~~ 225 (743)
T TIGR00870 160 ------GDFFVK---SQGVDSFYHGESPLNAAACLGSPSIVALLSEDPADILTADS-----LGNTLLHLLVMENEFKAEY 225 (743)
T ss_pred ------Cchhhc---CCCCCcccccccHHHHHHHhCCHHHHHHHhcCCcchhhHhh-----hhhHHHHHHHhhhhhhHHH
Confidence 000000 01112223335677777788889999999988887776543 3456666666555 1
Q ss_pred ----HHHHHHHHhhhhhcCCCCCcchhh--hhhhhhhccccCCCHHHHHHHHHhhhhcc
Q psy9003 525 ----PEQLKYLVDECHKAGLFGTPEQLK--YLVDECHKAGLFGTPEQLKYLVDECHKAG 577 (1276)
Q Consensus 525 ----~e~~~~lv~~~~~~~~~~t~~~l~--~~~~~~~~~~~~~~~e~~~~l~~~~~~~~ 577 (1276)
....+++++..+...-....+.+. ..-|..+-|...|+++.+++|+++..+.+
T Consensus 226 ~~l~~~~~~~l~~ll~~~~~~~el~~i~N~~g~TPL~~A~~~g~~~l~~lLL~~~~~~k 284 (743)
T TIGR00870 226 EELSCQMYNFALSLLDKLRDSKELEVILNHQGLTPLKLAAKEGRIVLFRLKLAIKYKQK 284 (743)
T ss_pred HHHHHHHHHHHHHHHhccCChHhhhhhcCCCCCCchhhhhhcCCccHHHHHHHHHHhcc
Confidence 223334444433321000000111 22344466778888888888888765544
|
after chronic exposure to capsaicin. (McCleskey and Gold, 1999). |
| >PF14871 GHL6: Hypothetical glycosyl hydrolase 6 | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00023 Score=72.83 Aligned_cols=86 Identities=27% Similarity=0.355 Sum_probs=59.6
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEEEeccccCCcccCCCcCCCCCCCcccccCCCCCC--------CCCCCcCCCCCcH
Q psy9003 1031 GLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTH--------PLWDSRLFNYSEI 1102 (1276)
Q Consensus 1031 ~~~Gt~eEfK~LV~alHk~GI~VILDvV~NHt~~~~~~~~~~f~g~~~~Yy~~~~~g~~--------~~W~g~~LN~~np 1102 (1276)
|.++ .+-|+++|++||++||+|+.=+-++ .... .-...|.|+..+++|+. +.|...++|.
T Consensus 39 p~L~-~Dllge~v~a~h~~Girv~ay~~~~--~d~~------~~~~HPeW~~~~~~G~~~~~~~~~~~~~~~~c~ns--- 106 (132)
T PF14871_consen 39 PGLK-RDLLGEQVEACHERGIRVPAYFDFS--WDED------AAERHPEWFVRDADGRPMRGERFGYPGWYTCCLNS--- 106 (132)
T ss_pred CCCC-cCHHHHHHHHHHHCCCEEEEEEeee--cChH------HHHhCCceeeECCCCCCcCCCCcCCCCceecCCCc---
Confidence 4454 5889999999999999998655555 1110 11234677766666541 2243445543
Q ss_pred HHHHHHHHHHHHHHHhCCCcEEccCC
Q psy9003 1103 EVLRFLLSNLRWYLDEYQFDGFRFDG 1128 (1276)
Q Consensus 1103 ~Vr~~Iidsl~~Wv~eygVDGFRfD~ 1128 (1276)
..+++++..++--++.|.+|||=||.
T Consensus 107 ~Y~e~~~~~i~Ei~~~y~~DGiF~D~ 132 (132)
T PF14871_consen 107 PYREFLLEQIREILDRYDVDGIFFDI 132 (132)
T ss_pred cHHHHHHHHHHHHHHcCCCCEEEecC
Confidence 45689999999999999999999883
|
|
| >cd02859 AMPKbeta_GBD_like AMP-activated protein kinase (AMPK) beta subunit glycogen binding domain (GBD) | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00015 Score=67.69 Aligned_cols=64 Identities=27% Similarity=0.331 Sum_probs=49.7
Q ss_pred ceEEEEEccCCcEEEEEccCCCCccccccceecCCCeEEEEcCCCCCCCcccCcccEEEEEEEEeCCeeeeecCCcceE
Q psy9003 781 ECHKAGLLCFMHVVCAAGDFNNWNREEFAYKKLDFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHGHLLDRLSPWATY 859 (1276)
Q Consensus 781 ~a~FalwAP~A~~VsLvGDFN~wd~~~~pM~r~~~GVWsl~Ip~~~~G~~~i~hGs~YkYrV~~~dG~~~~~~DPYAka 859 (1276)
.+.|+..+ .|++|+|.|+|++|+. ..||.+...| |++.++ ++.|. +.|+|.| ||.+ ..||-...
T Consensus 3 ~v~f~~~~-~a~~V~v~G~F~~W~~-~~pm~~~~~~-~~~~~~-L~~g~------y~YkF~V---dg~w--~~d~~~~~ 66 (79)
T cd02859 3 PTTFVWPG-GGKEVYVTGSFDNWKK-KIPLEKSGKG-FSATLR-LPPGK------YQYKFIV---DGEW--RHSPDLPT 66 (79)
T ss_pred EEEEEEcC-CCcEEEEEEEcCCCCc-cccceECCCC-cEEEEE-cCCCC------EEEEEEE---CCEE--EeCCCCCc
Confidence 36788888 8999999999999975 6899987777 999885 44453 6778876 7865 67885543
|
AMPK is a metabolic stress sensing protein that senses AMP/ATP and has recently been found to act as a glycogen sensor as well. The protein functions as a alpha-beta-gamma heterotrimer. This domain is the glycogen binding domain of the beta subunit. |
| >PF14701 hDGE_amylase: glucanotransferase domain of human glycogen debranching enzyme | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00014 Score=86.52 Aligned_cols=90 Identities=24% Similarity=0.295 Sum_probs=63.9
Q ss_pred cCcHHHHHHhhhhHHHHcCCCCCccceeecccccccccccccceeeccCccccccccccccCCCcccCCCcccccccccc
Q psy9003 912 CASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAESHDQALVGDKTIAFWLMDK 991 (1276)
Q Consensus 912 ~Gtf~gl~ek~LdyLK~LGVna~d~wV~LmP~f~~eew~~~~pi~~l~~~Pi~E~~i~~~~S~~~~~WGYdp~nyf~~d~ 991 (1276)
.|.|.+-.+ .|+.++++|+|. |++. |+++. +..+| -|...|..
T Consensus 18 ~G~~~~W~~-~l~~~~~~GYNm----IHft--------------------Plq~~--G~S~S------~YSI~Dql---- 60 (423)
T PF14701_consen 18 MGPFSDWEK-HLKVISEKGYNM----IHFT--------------------PLQER--GESNS------PYSIYDQL---- 60 (423)
T ss_pred cCCHhHHHH-HHHHHHHcCCcE----EEec--------------------ccccC--CCCCC------Cccccchh----
Confidence 377776665 599999999999 9999 66665 22233 56655555
Q ss_pred ccccccCCCCCCcccccccccccCCCCCccccccccccCCCCCCHHHHHHHHHHHH-HcCCEEEEEEeccccCCcccC
Q psy9003 992 EMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECH-KAGLYVLLDVVHSHASKNVLD 1068 (1276)
Q Consensus 992 ~~y~~~S~~~Dp~~~~dap~~~yas~s~hkYt~D~~~ID~~~Gt~eEfK~LV~alH-k~GI~VILDvV~NHt~~~~~~ 1068 (1276)
..++.|..+ ..-.+.+++++||.+++ +.||.+|.|||+|||+.+++|
T Consensus 61 -----------------~~~~~~~~~-------------~~~~~~~~v~~~v~~~~~~~~ll~~~DvV~NHtA~nS~W 108 (423)
T PF14701_consen 61 -----------------KFDPDFFPP-------------GKESTFEDVKEFVKEAEKKYGLLSMTDVVLNHTANNSPW 108 (423)
T ss_pred -----------------hcChhhcCC-------------CccccHHHHHHHHHHHHHHcCceEEEEEeeccCcCCChH
Confidence 222112211 11145789999999996 799999999999999998754
|
|
| >PHA02743 Viral ankyrin protein; Provisional | Back alignment and domain information |
|---|
Probab=97.57 E-value=5.2e-05 Score=79.29 Aligned_cols=138 Identities=10% Similarity=0.009 Sum_probs=80.8
Q ss_pred ccccCCCChhhhhcccccchhccccCCHhHHH----hhcccccccccCCChhhHHHHHHHHhHhccCCChhhHHHhhhhh
Q psy9003 403 HKAGLFGTPEQLKYLVDECHKAGLFGTPEQLK----YLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDEC 478 (1276)
Q Consensus 403 h~~~~~~~~~~~~~~vt~lh~a~~~~~~~~~~----yli~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~~~~~~~v~~~ 478 (1276)
+|+....+.++. +++|.|++.|..+.++ +|++.+. .++..+... .|..
T Consensus 10 ~~~~~~~~~~~~----~~l~~a~~~g~~~~l~~~~~~l~~~g~-------------------~~~~~d~~g-----~t~L 61 (166)
T PHA02743 10 NLGAVEIDEDEQ----NTFLRICRTGNIYELMEVAPFISGDGH-------------------LLHRYDHHG-----RQCT 61 (166)
T ss_pred chHHhhhccCCC----cHHHHHHHcCCHHHHHHHHHHHhhcch-------------------hhhccCCCC-----CcHH
Confidence 455566666666 8888888777774433 3332111 111111111 5667
Q ss_pred cccccCCChhh---hhhhhhhhhhhccCCCHHHHHHHhhhhcccccCCCHHHHHHHHh-hhhhcCCCCCcchhhhhhhhh
Q psy9003 479 HKAGLFGTPEQ---LKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVD-ECHKAGLFGTPEQLKYLVDEC 554 (1276)
Q Consensus 479 ~~a~~~~~~e~---~~~lv~~~~~~~~~~~~~~~~~~~t~~~~a~~~g~~e~~~~lv~-~~~~~~~~~t~~~l~~~~~~~ 554 (1276)
|.|...|+.+. +++|+....++|.... +..-|++|.|+..|+++++++|+. .+.+++..+. ...|..
T Consensus 62 h~Aa~~g~~~~~~~i~~Ll~~Gadin~~d~----~~g~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~-----~g~tpL 132 (166)
T PHA02743 62 HMVAWYDRANAVMKIELLVNMGADINAREL----GTGNTLLHIAASTKNYELAEWLCRQLGVNLGAINY-----QHETAY 132 (166)
T ss_pred HHHHHhCccCHHHHHHHHHHcCCCCCCCCC----CCCCcHHHHHHHhCCHHHHHHHHhccCCCccCcCC-----CCCCHH
Confidence 77776666554 5677777766665431 133567777777777777777774 4555553332 344555
Q ss_pred hccccCCCHHHHHHHHHhhhhcc
Q psy9003 555 HKAGLFGTPEQLKYLVDECHKAG 577 (1276)
Q Consensus 555 ~~~~~~~~~e~~~~l~~~~~~~~ 577 (1276)
+.|...|+.+.+++|+..++++|
T Consensus 133 ~~A~~~~~~~iv~~Ll~~ga~~~ 155 (166)
T PHA02743 133 HIAYKMRDRRMMEILRANGAVCD 155 (166)
T ss_pred HHHHHcCCHHHHHHHHHcCCCCC
Confidence 55556677777777777777766
|
|
| >COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00022 Score=89.71 Aligned_cols=60 Identities=18% Similarity=0.132 Sum_probs=47.2
Q ss_pred hhccceEec-CC-cEEEEEEccCCceEEEE-eec--cCC---Ccce------EEEEEccCccccceEEEEEecC
Q psy9003 63 NKYGIHVQA-DN-SVRCFEWAPSAQQLYLT-GNV--SLT---PWSI------MEEASLSSIKLIQSIQYILTGV 122 (1276)
Q Consensus 63 ~~fGah~~~-~g-g~~f~~wAP~A~~v~l~-gdf--n~~---~w~m------~~~~~~~~~~~g~~yky~i~~~ 122 (1276)
--+||.... ++ |+.|.+|+.+|++|.|+ -|+ +-. -|.| +|.+++|++++|+.|.||+.+.
T Consensus 18 ~plga~~~~~~~~g~~f~l~s~~a~~v~l~l~d~~~~~~~~~~~~~~~~~G~iw~~~~p~~~~g~~y~yr~~g~ 91 (697)
T COG1523 18 YPLGATVIDIDGDGVNFALFSSHAERVELCLFDEAGNTEEGRLYPYDGELGAIWHLWLPGAKPGQVYGYRVHGP 91 (697)
T ss_pred ccccceeeeccCcceEEeeeccccceEEEEecCcccccccccccccCCccccEEEEEcCCCceeeEEEEecCCC
Confidence 357888644 33 89999999999999998 333 111 1554 9999999999999999999773
|
|
| >KOG4369|consensus | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00021 Score=90.17 Aligned_cols=235 Identities=14% Similarity=0.028 Sum_probs=134.6
Q ss_pred hccccccccCCChhhhHHhhhhh----ccccCCCChhhHHHHHhhhcccccCCChhHHHHHhhhcccccCCCChhhhhcc
Q psy9003 342 VDECHKAGLFGTPEQLKYLVDEC----HKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYL 417 (1276)
Q Consensus 342 ~~~~~~a~~~g~ie~~~yLi~~~----h~~~~~~~~e~~~~~~~~~~~a~~~~~id~vkyLi~~~h~~~~~~~~~~~~~~ 417 (1276)
-|+.|.||+-||-|+|-+||+.. |.++..=++ +|- +.-.|||-+|.-|....-..-...+..+-
T Consensus 758 ~t~LT~acaggh~e~vellv~rganiehrdkkgf~p-----lIm----aatagh~tvV~~llk~ha~veaQsdrtkd--- 825 (2131)
T KOG4369|consen 758 KTNLTSACAGGHREEVELLVVRGANIEHRDKKGFVP-----LIM----AATAGHITVVQDLLKAHADVEAQSDRTKD--- 825 (2131)
T ss_pred cccccccccCccHHHHHHHHHhcccccccccccchh-----hhh----hcccCchHHHHHHHhhhhhhhhhcccccC---
Confidence 37889999999999999999885 555421111 110 01135666655554332222333444444
Q ss_pred cccchhccccCCHhHHHhhcccccc--------------cccCCChhhHHHHHHHHhHhc-cCCChhhHHHhhhhhcccc
Q psy9003 418 VDECHKAGLFGTPEQLKYLVDECHK--------------AGLFGTPEQLKYLVDECHKAG-LFGTPEQLKYLVDECHKAG 482 (1276)
Q Consensus 418 vt~lh~a~~~~~~~~~~yli~~~~~--------------~~~~~~~e~l~~l~~~~~~~~-~~~~~~~~~~~v~~~~~a~ 482 (1276)
|+|..|+.-|+-+||+.||+-+-- +---|.++-+..|..-..||| +.++- -=|...--|-
T Consensus 826 -t~lSlacsggr~~vvelLl~~gankehrnvsDytPlsla~Sggy~~iI~~llS~GseInSrtgSk----lgisPLmlat 900 (2131)
T KOG4369|consen 826 -TMLSLACSGGRTRVVELLLNAGANKEHRNVSDYTPLSLARSGGYTKIIHALLSSGSEINSRTGSK----LGISPLMLAT 900 (2131)
T ss_pred -ceEEEecCCCcchHHHHHHHhhccccccchhhcCchhhhcCcchHHHHHHHhhcccccccccccc----cCcchhhhhh
Confidence 667777766777777776643321 111234444445555555555 22221 0144555566
Q ss_pred cCCChhhhhhhhhhhhhhccCC-CHHHHHHHhhhhcccccCCCHHHHHHHHhhhhhcCCCCCcchhhhhhhhhhccccCC
Q psy9003 483 LFGTPEQLKYLVDECHKAGLFG-TPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFG 561 (1276)
Q Consensus 483 ~~~~~e~~~~lv~~~~~~~~~~-~~~~~~~~~t~~~~a~~~g~~e~~~~lv~~~~~~~~~~t~~~l~~~~~~~~~~~~~~ 561 (1276)
++|+-+-.+.|.+.+-+||-.+ | --=|..|-||-+|-.|++++|...- .||-- -.+-..|-.-++--.|
T Consensus 901 mngh~~at~~ll~~gsdiNaqIeT-----NrnTaltla~fqgr~evv~lLLa~~--anveh---Raktgltplme~AsgG 970 (2131)
T KOG4369|consen 901 MNGHQAATLSLLQPGSDINAQIET-----NRNTALTLALFQGRPEVVFLLLAAQ--ANVEH---RAKTGLTPLMEMASGG 970 (2131)
T ss_pred hccccHHHHHHhcccchhcccccc-----ccccceeeccccCcchHHHHHHHHh--hhhhh---hcccCCcccchhhcCC
Confidence 8889899999999999998654 1 0135667777777777777776432 12100 1122344444555667
Q ss_pred CHHHHHHHHHhhhhcc---CCCChhhhhhhhhhhcccccCCCHHHHHHHHh
Q psy9003 562 TPEQLKYLVDECHKAG---LFGTPEQLKYLVDECHKAGLFGTPEQLKYLVD 609 (1276)
Q Consensus 562 ~~e~~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ 609 (1276)
=+|+=.+|.+++++-| |--|-+ |+.|-+.+.|+-.-+.+|..
T Consensus 971 yvdvg~~li~~gad~nasPvp~T~d------talti~a~kGh~kfv~~lln 1015 (2131)
T KOG4369|consen 971 YVDVGNLLIAAGADTNASPVPNTWD------TALTIPANKGHTKFVPKLLN 1015 (2131)
T ss_pred ccccchhhhhcccccccCCCCCcCC------ccceeecCCCchhhhHHhhC
Confidence 7777777777777777 444444 45555556666555555543
|
|
| >KOG0507|consensus | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.0001 Score=90.82 Aligned_cols=58 Identities=22% Similarity=0.052 Sum_probs=35.6
Q ss_pred hhccCCCCCccccchhhhhhcccccCCCHHHHHHHhhhhh--ccCCCCcccchhhhhccccccccCCChhhhHHh
Q psy9003 288 CHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECH--KAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYL 360 (1276)
Q Consensus 288 ~~~~~~~~~~~~~t~~~~~~~~a~~~gsi~~l~~Lv~~~~--~~~~~~~~~~~~~~~~~~~~a~~~g~ie~~~yL 360 (1276)
..|++| ...|.+|.|.++|.+++.++|.+.-+ .+.-+.+ .++.|.|.-+|+.||||.|
T Consensus 42 ~n~qd~--------~gfTalhha~Lng~~~is~llle~ea~ldl~d~kg-------~~plhlaaw~g~~e~vkml 101 (854)
T KOG0507|consen 42 HNLQDY--------SGFTLLHHAVLNGQNQISKLLLDYEALLDLCDTKG-------ILPLHLAAWNGNLEIVKML 101 (854)
T ss_pred ccccCc--------cchhHHHHHHhcCchHHHHHHhcchhhhhhhhccC-------cceEEehhhcCcchHHHHH
Confidence 357766 25667788888999999999987644 1111111 3445555556666666665
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.71 Score=61.94 Aligned_cols=208 Identities=15% Similarity=0.144 Sum_probs=147.8
Q ss_pred cCCChhhHHHHHHHHhHhccCCChhhHHHhhhhhcccccCCChhhhhhhhhhhhhhccCCCHHHHHHHhhhhcccccCCC
Q psy9003 445 LFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGT 524 (1276)
Q Consensus 445 ~~~~~e~l~~l~~~~~~~~~~~~~~~~~~~v~~~~~a~~~~~~e~~~~lv~~~~~~~~~~~~~~~~~~~t~~~~a~~~g~ 524 (1276)
..|..+...-+.+.+.+.++..+....-.+|..+-+ +|.++...-+.+.+.+.+...+....-.++... +..|.
T Consensus 591 k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k---~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~---~k~G~ 664 (1060)
T PLN03218 591 NAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQ---KGDWDFALSIYDDMKKKGVKPDEVFFSALVDVA---GHAGD 664 (1060)
T ss_pred HCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHh---cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH---HhCCC
Confidence 467778777788888888877777766666665543 577888777778888777555533333344433 45788
Q ss_pred HHHHHHHHhhhhhcCCCCCcchhhhhhhhhhccccCCCHHHHHHHHHhhhhccCCCChhhhhhhhhhhcccccCCCHHHH
Q psy9003 525 PEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQL 604 (1276)
Q Consensus 525 ~e~~~~lv~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 604 (1276)
++...-+.+.+.+.++..........|..+. ..|.++.+..+.+.+.+.++..+.......+.... ..|.++.+
T Consensus 665 ~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~---k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~---k~G~~eeA 738 (1060)
T PLN03218 665 LDKAFEILQDARKQGIKLGTVSYSSLMGACS---NAKNWKKALELYEDIKSIKLRPTVSTMNALITALC---EGNQLPKA 738 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH---hCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH---HCCCHHHH
Confidence 9999889999988876554444444444444 46889999999999998887665544444443333 46889999
Q ss_pred HHHHhhhhhccCCCChhhhhhhHHHhhhccCCCCHHHHHHHHHHHHhhcCCCChHHHhhhhhh
Q psy9003 605 KYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDE 667 (1276)
Q Consensus 605 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 667 (1276)
--+++.|.+.|.+-|..--..++.+|.+ .|.++.++.+.+.|.+.|-..+......+++.
T Consensus 739 lelf~eM~~~Gi~Pd~~Ty~sLL~a~~k---~G~le~A~~l~~~M~k~Gi~pd~~tynsLIgl 798 (1060)
T PLN03218 739 LEVLSEMKRLGLCPNTITYSILLVASER---KDDADVGLDLLSQAKEDGIKPNLVMCRCITGL 798 (1060)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHH---CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 9999999999888776655567777776 47799999999999998876666555555554
|
|
| >PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.00017 Score=66.74 Aligned_cols=87 Identities=25% Similarity=0.235 Sum_probs=55.3
Q ss_pred cccccCCCHHHHHHHHhhhhhcCCCCCcchhhhhhhhhhccccCCCHHHHHHHHHhhhhccCCCChhhhhhhhhhhcccc
Q psy9003 517 HKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAG 596 (1276)
Q Consensus 517 ~~a~~~g~~e~~~~lv~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 596 (1276)
+.|+.+|+++.+++|+....+++. ....| +.|+..|++|-+++|++.++++|... ...-|.++.|.
T Consensus 2 ~~A~~~~~~~~~~~ll~~~~~~~~--~~~~l-------~~A~~~~~~~~~~~Ll~~g~~~~~~~-----~~g~t~L~~A~ 67 (89)
T PF12796_consen 2 HIAAQNGNLEILKFLLEKGADINL--GNTAL-------HYAAENGNLEIVKLLLENGADINSQD-----KNGNTALHYAA 67 (89)
T ss_dssp HHHHHTTTHHHHHHHHHTTSTTTS--SSBHH-------HHHHHTTTHHHHHHHHHTTTCTT-BS-----TTSSBHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHCcCCCCC--CCCHH-------HHHHHcCCHHHHHHHHHhcccccccC-----CCCCCHHHHHH
Confidence 456777888888888876666655 21233 34447777888888888777766332 12244555555
Q ss_pred cCCCHHHHHHHHhhhhhccCC
Q psy9003 597 LFGTPEQLKYLVDECHKAGLF 617 (1276)
Q Consensus 597 ~~~~~e~~~~l~~~~~~~~~~ 617 (1276)
.+|++|.+++|++.+.++|.+
T Consensus 68 ~~~~~~~~~~Ll~~g~~~~~~ 88 (89)
T PF12796_consen 68 ENGNLEIVKLLLEHGADVNIR 88 (89)
T ss_dssp HTTHHHHHHHHHHTTT-TTSS
T ss_pred HcCCHHHHHHHHHcCCCCCCc
Confidence 778888888888777777653
|
These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B .... |
| >PHA02741 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.00011 Score=76.80 Aligned_cols=122 Identities=13% Similarity=-0.037 Sum_probs=83.3
Q ss_pred hhhhcccccCCCHHHHHHHhhhh----hccCCCCcccchhhhhccccccccCCC----hhhhHHhhhhhccccC-CC-Ch
Q psy9003 304 VDECHKAGLFGTPEQLKYLVDEC----HKAGLFGTPEQLKYLVDECHKAGLFGT----PEQLKYLVDECHKAGL-FG-TP 373 (1276)
Q Consensus 304 ~~~~~~a~~~gsi~~l~~Lv~~~----~~~~~~~~~~~~~~~~~~~~~a~~~g~----ie~~~yLi~~~h~~~~-~~-~~ 373 (1276)
.|.+|.|+..|+.+++++|+... +.+.++..|.. ..|..|.|+..|+ ++++++|+...-.++. +. ..
T Consensus 22 ~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~d~~---g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gadin~~~~~~g 98 (169)
T PHA02741 22 ENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDDA---GQMCIHIAAEKHEAQLAAEIIDHLIELGADINAQEMLEG 98 (169)
T ss_pred CCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhccCCC---CCcHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCCcCCC
Confidence 34446677799999999986532 22334443332 2466677778888 6999999875433332 11 23
Q ss_pred hhHHHHHhhhcccccCCChhHHHHHhhhcccccCCCChhhhhcccccchhccccCCHhHHHhhcc
Q psy9003 374 EQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVD 438 (1276)
Q Consensus 374 e~~~~~~~~~~~a~~~~~id~vkyLi~~~h~~~~~~~~~~~~~~vt~lh~a~~~~~~~~~~yli~ 438 (1276)
++..+ -|...++.+++++|+.....++-..+.++. ||||.|...++.++++.|+.
T Consensus 99 ~TpLh------~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~----tpL~~A~~~~~~~iv~~L~~ 153 (169)
T PHA02741 99 DTALH------LAAHRRDHDLAEWLCCQPGIDLHFCNADNK----SPFELAIDNEDVAMMQILRE 153 (169)
T ss_pred CCHHH------HHHHcCCHHHHHHHHhCCCCCCCcCCCCCC----CHHHHHHHCCCHHHHHHHHH
Confidence 33333 344468999999999755566666677788 99999999999999988875
|
|
| >COG1649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.0016 Score=77.76 Aligned_cols=133 Identities=17% Similarity=0.199 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHHHcCCEEEEEEeccccCCcccCCCcCCCCCCCcccccCCCCC----CCCC-CCcCCCCCcHHHHHHHHH
Q psy9003 1036 PEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGT----HPLW-DSRLFNYSEIEVLRFLLS 1110 (1276)
Q Consensus 1036 ~eEfK~LV~alHk~GI~VILDvV~NHt~~~~~~~~~~f~g~~~~Yy~~~~~g~----~~~W-~g~~LN~~np~Vr~~Iid 1110 (1276)
-+-|+.+|+++|++||+|+-=+-+--++..... .....+.+.....++. +..| ...-||-.+|+||++|.+
T Consensus 114 ~DpLa~~I~~AHkr~l~v~aWf~~~~~a~~~s~----~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ldPg~Pevq~~i~~ 189 (418)
T COG1649 114 YDPLAFVIAEAHKRGLEVHAWFNPYRMAPPTSP----LTKRHPHWLTTKRPGWVYVRHQGWGKRVWLDPGIPEVQDFITS 189 (418)
T ss_pred CChHHHHHHHHHhcCCeeeechhhcccCCCCCh----hHhhCCCCcccCCCCeEEEecCCceeeeEeCCCChHHHHHHHH
Confidence 367899999999999999877766655543211 1111111111111110 1122 233579999999999999
Q ss_pred HHHHHHHhCCCcEEccCCccccccccCCCCCCCCCCCc----cccCC----CCCch---------HHHHHHHHHHHHHhh
Q psy9003 1111 NLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYD----EYFGL----NVDTD---------ALIYLMVANKFLHDK 1173 (1276)
Q Consensus 1111 sl~~Wv~eygVDGFRfD~a~~L~~~d~g~g~~~~~~~~----~~~~~----~~d~~---------a~~Fl~el~~~Vr~~ 1173 (1276)
.+.--++.|.|||..||---... -.|..... ..++. ..+.. .-.|++.+...||+.
T Consensus 190 lv~evV~~YdvDGIQfDd~fy~~-------~~~gy~~~~~~~y~~et~~~~~~~~~~w~~WRr~~i~~~v~~i~~~VKav 262 (418)
T COG1649 190 LVVEVVRNYDVDGIQFDDYFYYP-------IPFGYDPDTVTLYRYETGKGPPSNPDQWTDWRRDNITALVAQISQTVKAV 262 (418)
T ss_pred HHHHHHhCCCCCceecceeeccc-------CccccCchHHHHHHhhccCCCCCCHHHHHHHHHHhHHHHHHHHHHHHHhh
Confidence 99999999999999999533221 01110000 00000 11111 225788899999999
Q ss_pred CCCeEE
Q psy9003 1174 YPEIIT 1179 (1276)
Q Consensus 1174 ~Pdvil 1179 (1276)
+|++++
T Consensus 263 Kp~v~~ 268 (418)
T COG1649 263 KPNVKF 268 (418)
T ss_pred CCCeEE
Confidence 999765
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.066 Score=71.39 Aligned_cols=277 Identities=14% Similarity=0.148 Sum_probs=171.8
Q ss_pred CChhhHHHHHHHHhHhccCCChhhHHHhhhhhcccccCCChhhhhhhhhhhhhhc--cCCCHHHHHHHhhhhcccccCCC
Q psy9003 447 GTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAG--LFGTPEQLKYLVDECHKAGLFGT 524 (1276)
Q Consensus 447 ~~~e~l~~l~~~~~~~~~~~~~~~~~~~v~~~~~a~~~~~~e~~~~lv~~~~~~~--~~~~~~~~~~~~t~~~~a~~~g~ 524 (1276)
|..+...-+.+.+.+.++.-+....-.+|..+-+ .|.++...-+.+.+.+.. ...+....-.++... +..|.
T Consensus 521 G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k---~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay---~k~G~ 594 (1060)
T PLN03218 521 GQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQ---SGAVDRAFDVLAEMKAETHPIDPDHITVGALMKAC---ANAGQ 594 (1060)
T ss_pred cCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH---CCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHH---HHCCC
Confidence 4455544555556555554444444444544433 355666555555554432 222222222234433 34677
Q ss_pred HHHHHHHHhhhhhcCCCCCcchhhhhhhhhhccccCCCHHHHHHHHHhhhhccCCCChhhhhhhhhhhcccccCCCHHHH
Q psy9003 525 PEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQL 604 (1276)
Q Consensus 525 ~e~~~~lv~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 604 (1276)
++.+.-+.+.+.+.++..+.......|..+. ..|.++.+..+.+.|.+.|+..+...+-..+..+. ..|.++.+
T Consensus 595 ldeA~elf~~M~e~gi~p~~~tynsLI~ay~---k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~---k~G~~eeA 668 (1060)
T PLN03218 595 VDRAKEVYQMIHEYNIKGTPEVYTIAVNSCS---QKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAG---HAGDLDKA 668 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCChHHHHHHHHHHH---hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH---hCCCHHHH
Confidence 8888888888888776555443333443333 35778888888888888886665444433333333 35778888
Q ss_pred HHHHhhhhhccCCCChhhhhhhHHHhhhccCCCCHHHHHHHHHHHHhhcCCCChHHHhhhhhhhhhcccCCChhHHHHHH
Q psy9003 605 KYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLV 684 (1276)
Q Consensus 605 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 684 (1276)
.-+.+.|.+.|.+.+..--..++.++.|+ |.++.+..+++.|.+.|...+......+++++.+ .|.++.+.-++
T Consensus 669 ~~l~~eM~k~G~~pd~~tynsLI~ay~k~---G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k---~G~~eeAlelf 742 (1060)
T PLN03218 669 FEILQDARKQGIKLGTVSYSSLMGACSNA---KNWKKALELYEDIKSIKLRPTVSTMNALITALCE---GNQLPKALEVL 742 (1060)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhC---CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH---CCCHHHHHHHH
Confidence 88888888888877766555677777774 6678888888888877655555555556666654 46678888888
Q ss_pred HHHHhhccCCChhHHHhhHHHHhhcccCCCHHHHHHHHHHHHhccCCCCchhhhhhhhhh
Q psy9003 685 DECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDEC 744 (1276)
Q Consensus 685 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 744 (1276)
+.|.+.|-.-.......++.++.+ .|.++.++.+.+.|.+.|...++..-..+.+.|
T Consensus 743 ~eM~~~Gi~Pd~~Ty~sLL~a~~k---~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc 799 (1060)
T PLN03218 743 SEMKRLGLCPNTITYSILLVASER---KDDADVGLDLLSQAKEDGIKPNLVMCRCITGLC 799 (1060)
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHH---CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 888877654444444455555544 566888888888888888776666555555544
|
|
| >PF02324 Glyco_hydro_70: Glycosyl hydrolase family 70; InterPro: IPR003318 O-Glycosyl hydrolases 3 | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.00042 Score=85.21 Aligned_cols=109 Identities=17% Similarity=0.263 Sum_probs=60.0
Q ss_pred CceEEEEecCC--ccccCccCcHHHHHHhhhhHHHHcCCCCCccceeecccccccccccccceeeccCcccccccccccc
Q psy9003 895 NLKIYESHVGI--CTQEQKCASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAE 972 (1276)
Q Consensus 895 d~vIYElHVr~--ft~~~~~Gtf~gl~ek~LdyLK~LGVna~d~wV~LmP~f~~eew~~~~pi~~l~~~Pi~E~~i~~~~ 972 (1276)
.-+|||-+-.- |-....-=+..-|++. .+-+|++|||. .||-|.|.- -+..+..+
T Consensus 564 SqvIYEgFSNFQ~~~t~~~eytN~~IA~N-a~lFk~wGITs----FemAPQY~S-----------s~D~tFLD------- 620 (809)
T PF02324_consen 564 SQVIYEGFSNFQDFPTTPSEYTNVVIAKN-ADLFKSWGITS----FEMAPQYRS-----------STDGTFLD------- 620 (809)
T ss_dssp T-EEEE---TTB---SSGGGSHHHHHHHT-HHHHHHTTEEE----EE----S-B-------------SSSSHH-------
T ss_pred cchhhccccccccCCCChHHHHHHHHHHh-HHHHHhcCcce----eeeCcceec-----------CCCCcchh-------
Confidence 46999977542 2111222345556654 88999999999 999987751 00011111
Q ss_pred CCCcccCCCccccccccccccccccCCCCCCcccccccccccCCCCCccccccccccCCCCCCHHHHHHHHHHHHHcCCE
Q psy9003 973 SHDQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLY 1052 (1276)
Q Consensus 973 S~~~~~WGYdp~nyf~~d~~~y~~~S~~~Dp~~~~dap~~~yas~s~hkYt~D~~~ID~~~Gt~eEfK~LV~alHk~GI~ 1052 (1276)
| ...-||.-.|-| | . .|+.+ .+||+.++|+..|+++|+.||+
T Consensus 621 S--iiqNGYAFtDRY--D-------------------L--g~s~p-------------tKYGs~~dL~~AikALH~~Giq 662 (809)
T PF02324_consen 621 S--IIQNGYAFTDRY--D-------------------L--GMSKP-------------TKYGSVEDLRNAIKALHAAGIQ 662 (809)
T ss_dssp H--HTT-SSSBS-TT----------------------S--SSSS--------------BTTB-HHHHHHHHHHHHHTT-E
T ss_pred h--HhhcCccccchh--h-------------------h--cCCCC-------------CCCCCHHHHHHHHHHHHHcCcc
Confidence 1 234588877777 1 1 12222 5789999999999999999999
Q ss_pred EEEEEeccccCC
Q psy9003 1053 VLLDVVHSHASK 1064 (1276)
Q Consensus 1053 VILDvV~NHt~~ 1064 (1276)
||-|+|++....
T Consensus 663 viaDwVpdQiYn 674 (809)
T PF02324_consen 663 VIADWVPDQIYN 674 (809)
T ss_dssp EEEEE-TSEE--
T ss_pred hhhhhchHhhhC
Confidence 999999997653
|
2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glucosyltransferases or sucrose 6-glycosyl transferases (GTF-S) (2.4.1.5 from EC, GH70 from CAZY) catalyse the transfer of D-glucopyramnosyl units from sucrose onto acceptor molecules []. This signature roughly corresponds to the N-terminal catalytic domain of the enzyme. Members of this group also contain the putative cell wall binding repeat (IPR002479 from INTERPRO).; GO: 0009250 glucan biosynthetic process; PDB: 3AIE_G 3AIB_D 3AIC_E 3TTQ_A 3TTO_D 3KLL_A 3KLK_A 3HZ3_A. |
| >PHA02743 Viral ankyrin protein; Provisional | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.00027 Score=73.97 Aligned_cols=130 Identities=11% Similarity=-0.019 Sum_probs=92.9
Q ss_pred hhhcccccCCChhhhh----hhhhhhhhhccCCCHHHHHHHhhhhcccccCCCHHH---HHHHHhhhhhcCCCC-Ccchh
Q psy9003 476 DECHKAGLFGTPEQLK----YLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQ---LKYLVDECHKAGLFG-TPEQL 547 (1276)
Q Consensus 476 ~~~~~a~~~~~~e~~~----~lv~~~~~~~~~~~~~~~~~~~t~~~~a~~~g~~e~---~~~lv~~~~~~~~~~-t~~~l 547 (1276)
+..|.|...|.++.|+ +|.+....++.+.. ...|+.|.|+..|+.+. +++|+..++++|..+ .
T Consensus 22 ~~l~~a~~~g~~~~l~~~~~~l~~~g~~~~~~d~-----~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gadin~~d~~---- 92 (166)
T PHA02743 22 NTFLRICRTGNIYELMEVAPFISGDGHLLHRYDH-----HGRQCTHMVAWYDRANAVMKIELLVNMGADINARELG---- 92 (166)
T ss_pred cHHHHHHHcCCHHHHHHHHHHHhhcchhhhccCC-----CCCcHHHHHHHhCccCHHHHHHHHHHcCCCCCCCCCC----
Confidence 4566677778886544 44444555554333 45789999999988665 789999999988543 3
Q ss_pred hhhhhhhhccccCCCHHHHHHHHH-hhhhccCCCChhhhhhhhhhhcccccCCCHHHHHHHHhhhhhccCCCCh
Q psy9003 548 KYLVDECHKAGLFGTPEQLKYLVD-ECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTP 620 (1276)
Q Consensus 548 ~~~~~~~~~~~~~~~~e~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~ 620 (1276)
+.-|-.|.|...|+++.+++|+. .+++++..... ..|.++.|...|+.+.+++|+..++++|.+-+.
T Consensus 93 -~g~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~-----g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~ 160 (166)
T PHA02743 93 -TGNTLLHIAASTKNYELAEWLCRQLGVNLGAINYQ-----HETAYHIAYKMRDRRMMEILRANGAVCDDPLSI 160 (166)
T ss_pred -CCCcHHHHHHHhCCHHHHHHHHhccCCCccCcCCC-----CCCHHHHHHHcCCHHHHHHHHHcCCCCCCcccC
Confidence 33455566668999999999996 68887732211 255566666889999999999999999877654
|
|
| >KOG0507|consensus | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.00041 Score=85.78 Aligned_cols=194 Identities=20% Similarity=0.123 Sum_probs=121.2
Q ss_pred hccccccccCCChhhhHHhhhhhccccCCCChhhHHH-HHhhhcccccCCChhHHHHHhhhcccccCCCChhhhhccccc
Q psy9003 342 VDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKY-LVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDE 420 (1276)
Q Consensus 342 ~~~~~~a~~~g~ie~~~yLi~~~h~~~~~~~~e~~~~-~~~~~~~a~~~~~id~vkyLi~~~h~~~~~~~~~~~~~~vt~ 420 (1276)
.|.+|.|+.-|+++|+|+|.+-=| + .|+... .++-.+-|.++|+-|+||.|.--. -++.+.++++. ||
T Consensus 50 fTalhha~Lng~~~is~llle~ea--~----ldl~d~kg~~plhlaaw~g~~e~vkmll~q~-d~~na~~~e~~----tp 118 (854)
T KOG0507|consen 50 FTLLHHAVLNGQNQISKLLLDYEA--L----LDLCDTKGILPLHLAAWNGNLEIVKMLLLQT-DILNAVNIENE----TP 118 (854)
T ss_pred hhHHHHHHhcCchHHHHHHhcchh--h----hhhhhccCcceEEehhhcCcchHHHHHHhcc-cCCCcccccCc----Cc
Confidence 688899999999999999965433 0 111110 123344556799999999998655 56788899999 99
Q ss_pred chhccccCCHhHHHhhcccccccccCCChhhHHHHHHHHhHhccCCChhhHHHhhhhhcccccCCChhhhhhhhhhhhhh
Q psy9003 421 CHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKA 500 (1276)
Q Consensus 421 lh~a~~~~~~~~~~yli~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~~~~~~~v~~~~~a~~~~~~e~~~~lv~~~~~~ 500 (1276)
||.|+.+||-|||.||++-..--++ +++.+ +-..+.|-+++ .-+++.-|... +-+++- .+ ++. .+..
T Consensus 119 lhlaaqhgh~dvv~~Ll~~~adp~i-~nns~-~t~ldlA~qfg---r~~Vvq~ll~~--~~~~~~-~~----~~~-~~~~ 185 (854)
T KOG0507|consen 119 LHLAAQHGHLEVVFYLLKKNADPFI-RNNSK-ETVLDLASRFG---RAEVVQMLLQK--KFPVQS-SL----RVG-DIKR 185 (854)
T ss_pred cchhhhhcchHHHHHHHhcCCCccc-cCccc-ccHHHHHHHhh---hhHHHHHHhhh--ccchhh-cc----cCC-CCCC
Confidence 9999999999999999964432221 23333 33345555553 23555555433 111221 11 222 1111
Q ss_pred ccCCCHHHHHHHhhhhcccccCCCHHHHHHHHhhhhhcCCCCCcchhhhhhhhhhccccCCCHHHHHHHHHhh
Q psy9003 501 GLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDEC 573 (1276)
Q Consensus 501 ~~~~~~~~~~~~~t~~~~a~~~g~~e~~~~lv~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~e~~~~l~~~~ 573 (1276)
-.. ..++.|=|..+|+++++..|...+=+||... ..-|.+|.|-.-|-.|.+..|.++|
T Consensus 186 ~~~--------~~~plHlaakngh~~~~~~ll~ag~din~~t------~~gtalheaalcgk~evvr~ll~~g 244 (854)
T KOG0507|consen 186 PFP--------AIYPLHLAAKNGHVECMQALLEAGFDINYTT------EDGTALHEAALCGKAEVVRFLLEIG 244 (854)
T ss_pred CCC--------CcCCcchhhhcchHHHHHHHHhcCCCccccc------ccchhhhhHhhcCcchhhhHHHhhc
Confidence 111 1467788888888888888888777777433 2345566666666667766666655
|
|
| >PHA02736 Viral ankyrin protein; Provisional | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.00017 Score=73.84 Aligned_cols=94 Identities=12% Similarity=-0.021 Sum_probs=64.8
Q ss_pred hhhhcccccCCCh---hhhhhhhhhhhhhccCCCHHHHHHHhhhhcccccCCCHHHHHHHHhh-hhhcCCCCCcchhhhh
Q psy9003 475 VDECHKAGLFGTP---EQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDE-CHKAGLFGTPEQLKYL 550 (1276)
Q Consensus 475 v~~~~~a~~~~~~---e~~~~lv~~~~~~~~~~~~~~~~~~~t~~~~a~~~g~~e~~~~lv~~-~~~~~~~~t~~~l~~~ 550 (1276)
.|..|.|...|.. |.+++|+..+.++|.+.. +...|..|.|...|+.+++++|+.. +.++|..+. +.
T Consensus 56 ~t~Lh~a~~~~~~~~~e~v~~Ll~~gadin~~~~----~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~~-----~g 126 (154)
T PHA02736 56 KQCVHIVSNPDKADPQEKLKLLMEWGADINGKER----VFGNTPLHIAVYTQNYELATWLCNQPGVNMEILNY-----AF 126 (154)
T ss_pred CEEEEeecccCchhHHHHHHHHHHcCCCccccCC----CCCCcHHHHHHHhCCHHHHHHHHhCCCCCCccccC-----CC
Confidence 4677777777766 457788887777776541 0245777778888888888888763 666664444 45
Q ss_pred hhhhhccccCCCHHHHHHHHHhhhhcc
Q psy9003 551 VDECHKAGLFGTPEQLKYLVDECHKAG 577 (1276)
Q Consensus 551 ~~~~~~~~~~~~~e~~~~l~~~~~~~~ 577 (1276)
-|..+.|...|+.+.+++|...+++.+
T Consensus 127 ~tpL~~A~~~~~~~i~~~Ll~~ga~~~ 153 (154)
T PHA02736 127 KTPYYVACERHDAKMMNILRAKGAQCK 153 (154)
T ss_pred CCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence 555566667888888888887776654
|
|
| >PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.00026 Score=65.48 Aligned_cols=87 Identities=24% Similarity=0.234 Sum_probs=70.5
Q ss_pred hcccccCCChhhhhhhhhhhhhhccCCCHHHHHHHhhhhcccccCCCHHHHHHHHhhhhhcCCCCCcchhhhhhhhhhcc
Q psy9003 478 CHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKA 557 (1276)
Q Consensus 478 ~~~a~~~~~~e~~~~lv~~~~~~~~~~~~~~~~~~~t~~~~a~~~g~~e~~~~lv~~~~~~~~~~t~~~l~~~~~~~~~~ 557 (1276)
.|.|..+|+++.+++|++...+++. + -|..+.|+..|++|++|+|++.+.+++..+. +.-|.++.|
T Consensus 1 L~~A~~~~~~~~~~~ll~~~~~~~~-~--------~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~-----~g~t~L~~A 66 (89)
T PF12796_consen 1 LHIAAQNGNLEILKFLLEKGADINL-G--------NTALHYAAENGNLEIVKLLLENGADINSQDK-----NGNTALHYA 66 (89)
T ss_dssp HHHHHHTTTHHHHHHHHHTTSTTTS-S--------SBHHHHHHHTTTHHHHHHHHHTTTCTT-BST-----TSSBHHHHH
T ss_pred CHHHHHcCCHHHHHHHHHCcCCCCC-C--------CCHHHHHHHcCCHHHHHHHHHhcccccccCC-----CCCCHHHHH
Confidence 3678889999999999997777775 2 2578888899999999999998888875553 566667777
Q ss_pred ccCCCHHHHHHHHHhhhhccC
Q psy9003 558 GLFGTPEQLKYLVDECHKAGL 578 (1276)
Q Consensus 558 ~~~~~~e~~~~l~~~~~~~~~ 578 (1276)
...|+.|.+++|++.+.++|.
T Consensus 67 ~~~~~~~~~~~Ll~~g~~~~~ 87 (89)
T PF12796_consen 67 AENGNLEIVKLLLEHGADVNI 87 (89)
T ss_dssp HHTTHHHHHHHHHHTTT-TTS
T ss_pred HHcCCHHHHHHHHHcCCCCCC
Confidence 799999999999999888774
|
These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B .... |
| >PHA02741 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.00048 Score=72.09 Aligned_cols=135 Identities=10% Similarity=-0.091 Sum_probs=89.1
Q ss_pred ChhhhhcccccchhccccCCHhHHHhhcccccccccCCChhhHHHHHHHHhHhccCCChhhHHHhhhhhcccccCCC---
Q psy9003 410 TPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGT--- 486 (1276)
Q Consensus 410 ~~~~~~~~vt~lh~a~~~~~~~~~~yli~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~~~~~~~v~~~~~a~~~~~--- 486 (1276)
+.++. |+||.|+..|+.++|++|+....+.. ....++..+... .|..|.|...|.
T Consensus 18 ~~~g~----t~Lh~Aa~~g~~~~v~~l~~~~~~~~-------------~ga~in~~d~~g-----~T~Lh~A~~~g~~~~ 75 (169)
T PHA02741 18 NSEGE----NFFHEAARCGCFDIIARFTPFIRGDC-------------HAAALNATDDAG-----QMCIHIAAEKHEAQL 75 (169)
T ss_pred ccCCC----CHHHHHHHcCCHHHHHHHHHHhccch-------------hhhhhhccCCCC-----CcHHHHHHHcCChHH
Confidence 34566 99999999999999998864322110 011222222222 467777777776
Q ss_pred -hhhhhhhhhhhhhhccCCCHHHHHHHhhhhcccccCCCHHHHHHHHhh-hhhcCCCCCcchhhhhhhhhhccccCCCHH
Q psy9003 487 -PEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDE-CHKAGLFGTPEQLKYLVDECHKAGLFGTPE 564 (1276)
Q Consensus 487 -~e~~~~lv~~~~~~~~~~~~~~~~~~~t~~~~a~~~g~~e~~~~lv~~-~~~~~~~~t~~~l~~~~~~~~~~~~~~~~e 564 (1276)
.|.+++|+.....+|.+.. ....|+.|.|...|..+++++|+.. ..+++..+. +.-|..+.|...|+.+
T Consensus 76 ~~~ii~~Ll~~gadin~~~~----~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~n~-----~g~tpL~~A~~~~~~~ 146 (169)
T PHA02741 76 AAEIIDHLIELGADINAQEM----LEGDTALHLAAHRRDHDLAEWLCCQPGIDLHFCNA-----DNKSPFELAIDNEDVA 146 (169)
T ss_pred HHHHHHHHHHcCCCCCCCCc----CCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCC-----CCCCHHHHHHHCCCHH
Confidence 4777888877777765431 1346778888888888888888863 666665444 4445556666788888
Q ss_pred HHHHHHHhhhh
Q psy9003 565 QLKYLVDECHK 575 (1276)
Q Consensus 565 ~~~~l~~~~~~ 575 (1276)
-+++|....+.
T Consensus 147 iv~~L~~~~~~ 157 (169)
T PHA02741 147 MMQILREIVAT 157 (169)
T ss_pred HHHHHHHHHHH
Confidence 88888877654
|
|
| >KOG0514|consensus | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.00089 Score=77.37 Aligned_cols=152 Identities=12% Similarity=-0.064 Sum_probs=105.3
Q ss_pred cccccCCChHHHHHHHhhhhccCCCCCccccc-hhhhhhcccccCCCHHHHHHHhhhhhccCCCCcccchhhhhcccccc
Q psy9003 270 HKAGLFGTPEQLKYLVDECHKAGLFGTPEQLK-YLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKA 348 (1276)
Q Consensus 270 h~~~~~~~ie~~~yli~e~~~~~~~~~~~~~t-~~~~~~~~a~~~gsi~~l~~Lv~~~~~~~~~~~~~~~~~~~~~~~~a 348 (1276)
|++-.+...+||+.|.|---|+-...|++|.| +-.+++.+.=.+..+++|-.|..- -+||-- --.+.-|..-+|
T Consensus 273 HYsVSHaNF~VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~m---gnVNaK--AsQ~gQTALMLA 347 (452)
T KOG0514|consen 273 HYAVSHANFDVVSILLDSGVCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKM---GDVNAK--ASQHGQTALMLA 347 (452)
T ss_pred eeeecccchHHHHHHhccCcccccccccccccHHHHHHHHhhcchhhHHHHHHHHhc---cCcchh--hhhhcchhhhhh
Confidence 55555577888888888888887777888877 344555555567778888777632 333310 001112445567
Q ss_pred ccCCChhhhHHhhhhhccccCCCChhhHHHHHhhhcccccCCChhHHHHHhhhcccccCCCChhhhhcccccchhccccC
Q psy9003 349 GLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFG 428 (1276)
Q Consensus 349 ~~~g~ie~~~yLi~~~h~~~~~~~~e~~~~~~~~~~~a~~~~~id~vkyLi~~~h~~~~~~~~~~~~~~vt~lh~a~~~~ 428 (1276)
.-+|.+|.||.|..-...+|+...+ - -|-.-+|.-+||-||+|+|.-+=-||-.-||.+|- |.|-.|...|
T Consensus 348 VSHGr~d~vk~LLacgAdVNiQDdD-G----STALMCA~EHGhkEivklLLA~p~cd~sLtD~DgS----TAl~IAleag 418 (452)
T KOG0514|consen 348 VSHGRVDMVKALLACGADVNIQDDD-G----STALMCAAEHGHKEIVKLLLAVPSCDISLTDVDGS----TALSIALEAG 418 (452)
T ss_pred hhcCcHHHHHHHHHccCCCccccCC-c----cHHHhhhhhhChHHHHHHHhccCcccceeecCCCc----hhhhhHHhcC
Confidence 7889999999998766666654332 1 12222334489999999999999999999999998 9999998888
Q ss_pred CHhHHHh
Q psy9003 429 TPEQLKY 435 (1276)
Q Consensus 429 ~~~~~~y 435 (1276)
+.|+--.
T Consensus 419 h~eIa~m 425 (452)
T KOG0514|consen 419 HREIAVM 425 (452)
T ss_pred chHHHHH
Confidence 8877533
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.84 Score=59.67 Aligned_cols=37 Identities=16% Similarity=0.127 Sum_probs=22.4
Q ss_pred CCCHHHHHHHHHHHHHcCCCCCchhhhHHHHhhhccc
Q psy9003 161 FGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAG 197 (1276)
Q Consensus 161 ygtp~~l~~~vd~~h~~~i~~~~~~~~~~~~~~~~~~ 197 (1276)
-|.+++-..+.+..-+.|+..+....-.|+..|.+..
T Consensus 64 ~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~ 100 (857)
T PLN03077 64 HGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKR 100 (857)
T ss_pred CCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCC
Confidence 4556666667777777776654444455666665543
|
|
| >PHA02884 ankyrin repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.0013 Score=75.73 Aligned_cols=123 Identities=9% Similarity=-0.060 Sum_probs=84.5
Q ss_pred hhhcccccCCCHHHHHHHHhhhhhcCCCCCcchhhhhhhhhhccccCCCHHHHHHHHHhhhhccCC-CChhhhhhhhhhh
Q psy9003 514 DECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLF-GTPEQLKYLVDEC 592 (1276)
Q Consensus 514 t~~~~a~~~g~~e~~~~lv~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~-~~~~~~~~~~~~~ 592 (1276)
+..+.|..+|++|++++|.+.++++|...+. .-.+..|..|.|...|++|.+++|++.++++|.. .... .|..
T Consensus 35 ~lL~~A~~~~~~eivk~LL~~GAdiN~~~~~-sd~~g~TpLh~Aa~~~~~eivklLL~~GADVN~~~~~~g-----~TpL 108 (300)
T PHA02884 35 NILYSSIKFHYTDIIDAILKLGADPEAPFPL-SENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYAEEAK-----ITPL 108 (300)
T ss_pred HHHHHHHHcCCHHHHHHHHHCCCCccccCcc-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcCcccCCCC-----CCHH
Confidence 3455566778999999999999988753210 1125567777888999999999999999998842 2111 4555
Q ss_pred cccccCCCHHHHHHHHhhhhhccCCCChhhhhhhHHHhhhccCCCCHHHHHHHHH
Q psy9003 593 HKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVD 647 (1276)
Q Consensus 593 ~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 647 (1276)
+-|...|.+|.+++|++.++++|.+-+.- .++++.|...+..+.+..+.|
T Consensus 109 h~Aa~~~~~eivklLL~~GAdin~kd~~G-----~TpL~~A~~~~~~~~~~~~~~ 158 (300)
T PHA02884 109 YISVLHGCLKCLEILLSYGADINIQTNDM-----VTPIELALMICNNFLAFMICD 158 (300)
T ss_pred HHHHHcCCHHHHHHHHHCCCCCCCCCCCC-----CCHHHHHHHhCChhHHHHhcC
Confidence 66668899999999999999998754333 344444444455555544443
|
|
| >PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.00058 Score=58.40 Aligned_cols=48 Identities=21% Similarity=0.153 Sum_probs=35.0
Q ss_pred ccccCCChhHHHHHhhhcccccCCCChhhhhcccccchhccccCCHhHHHhhc
Q psy9003 385 KAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLV 437 (1276)
Q Consensus 385 ~a~~~~~id~vkyLi~~~h~~~~~~~~~~~~~~vt~lh~a~~~~~~~~~~yli 437 (1276)
.|...|+.|++++|++. .+++-..+.++. ||||.|+..|+.+++++||
T Consensus 7 ~A~~~g~~~~~~~Ll~~-~~din~~d~~g~----t~lh~A~~~g~~~~~~~Ll 54 (54)
T PF13637_consen 7 WAARSGNLEIVKLLLEH-GADINAQDEDGR----TPLHYAAKNGNIDIVKFLL 54 (54)
T ss_dssp HHHHTT-HHHHHHHHHT-TSGTT-B-TTS------HHHHHHHTT-HHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHC-CCCCCCCCCCCC----CHHHHHHHccCHHHHHHHC
Confidence 34457889999999977 567666688888 9999999999999999986
|
... |
| >KOG0505|consensus | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.0018 Score=77.95 Aligned_cols=80 Identities=20% Similarity=0.235 Sum_probs=51.8
Q ss_pred CChHHHHHHHhhhhccCCCCCccccchhhhhhcccccCCCHHHHHHHhhhhhccCCCCcccchhhhhccccccccCCChh
Q psy9003 276 GTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPE 355 (1276)
Q Consensus 276 ~~ie~~~yli~e~~~~~~~~~~~~~t~~~~~~~~a~~~gsi~~l~~Lv~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~ie 355 (1276)
+..|-|..|+.-- -+|...++.|+|.+ |++......++|+||++...-+|-++. ...|+.|-|.--||++
T Consensus 51 ~d~~ev~~ll~~g-a~~~~~n~DglTal----hq~~id~~~e~v~~l~e~ga~Vn~~d~-----e~wtPlhaaascg~~~ 120 (527)
T KOG0505|consen 51 GDLEEVRKLLNRG-ASPNLCNVDGLTAL----HQACIDDNLEMVKFLVENGANVNAQDN-----EGWTPLHAAASCGYLN 120 (527)
T ss_pred ccHHHHHHHhccC-CCccccCCccchhH----HHHHhcccHHHHHHHHHhcCCcccccc-----ccCCcchhhcccccHH
Confidence 4444444444432 33344455555555 566668889999999987654443332 3467788888889999
Q ss_pred hhHHhhhhhc
Q psy9003 356 QLKYLVDECH 365 (1276)
Q Consensus 356 ~~~yLi~~~h 365 (1276)
|++|||+...
T Consensus 121 i~~~li~~gA 130 (527)
T KOG0505|consen 121 IVEYLIQHGA 130 (527)
T ss_pred HHHHHHHhhh
Confidence 9999988875
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=96.68 E-value=3.5 Score=53.98 Aligned_cols=119 Identities=13% Similarity=0.137 Sum_probs=82.4
Q ss_pred cCCCHHHHHHHHhhhhhccCCCChhhhhhhHHHhhhccCCCCHHHHHHHHHHHH-hhcCCCChHHHhhhhhhhhhcccCC
Q psy9003 597 LFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECH-KAGLFGTPEQLKYLVDECHKAGLFG 675 (1276)
Q Consensus 597 ~~~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 675 (1276)
.+|..+.+.-+.+.|.+.|.+-+..--.-++.+|.++ |.++++..+++.|. +.|-.-+.+.-.-+++.+.++|+
T Consensus 566 ~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~---g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~-- 640 (857)
T PLN03077 566 AHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRS---GMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGK-- 640 (857)
T ss_pred HcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhc---ChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCC--
Confidence 6788888888899888888776655434567777775 56888888888888 44545555666777788877765
Q ss_pred ChhHHHHHHHHHHhhccCCChhHHHhhHHHHhhcccCCCHHHHHHHHHHHHh
Q psy9003 676 TPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHK 727 (1276)
Q Consensus 676 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 727 (1276)
++.+.-+++.|.. -........|+.+|. .|+.+|..+...+++.|
T Consensus 641 -~~eA~~~~~~m~~---~pd~~~~~aLl~ac~---~~~~~e~~e~~a~~l~~ 685 (857)
T PLN03077 641 -LTEAYNFINKMPI---TPDPAVWGALLNACR---IHRHVELGELAAQHIFE 685 (857)
T ss_pred -HHHHHHHHHHCCC---CCCHHHHHHHHHHHH---HcCChHHHHHHHHHHHh
Confidence 5777777777631 122334556777763 47888887777666655
|
|
| >PHA02884 ankyrin repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.0021 Score=74.10 Aligned_cols=123 Identities=9% Similarity=-0.096 Sum_probs=88.7
Q ss_pred hhhcccccCCChhhhhhhhhhhhhhccCCCHHHHHHHhhhhcccccCCCHHHHHHHHhhhhhcCC-CCCcchhhhhhhhh
Q psy9003 476 DECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGL-FGTPEQLKYLVDEC 554 (1276)
Q Consensus 476 ~~~~~a~~~~~~e~~~~lv~~~~~~~~~~~~~~~~~~~t~~~~a~~~g~~e~~~~lv~~~~~~~~-~~t~~~l~~~~~~~ 554 (1276)
+..|.|..+|..|.+++|.+.++++|...+.+ -+...|+.|.|...|++|++++|++.++++|. .+. +..|-.
T Consensus 35 ~lL~~A~~~~~~eivk~LL~~GAdiN~~~~~s-d~~g~TpLh~Aa~~~~~eivklLL~~GADVN~~~~~-----~g~TpL 108 (300)
T PHA02884 35 NILYSSIKFHYTDIIDAILKLGADPEAPFPLS-ENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYAEE-----AKITPL 108 (300)
T ss_pred HHHHHHHHcCCHHHHHHHHHCCCCccccCccc-CCCCCCHHHHHHHcCCHHHHHHHHHcCCCcCcccCC-----CCCCHH
Confidence 44566778899999999999999998753200 11458999999999999999999999999985 333 345666
Q ss_pred hccccCCCHHHHHHHHHhhhhccCCCChhhhhhhhhhhcccccCCCHHHHHHHHh
Q psy9003 555 HKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVD 609 (1276)
Q Consensus 555 ~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ 609 (1276)
+.|...|.+|.+++|.+.++++|....+- .|+.+-|...++.+.+.++.|
T Consensus 109 h~Aa~~~~~eivklLL~~GAdin~kd~~G-----~TpL~~A~~~~~~~~~~~~~~ 158 (300)
T PHA02884 109 YISVLHGCLKCLEILLSYGADINIQTNDM-----VTPIELALMICNNFLAFMICD 158 (300)
T ss_pred HHHHHcCCHHHHHHHHHCCCCCCCCCCCC-----CCHHHHHHHhCChhHHHHhcC
Confidence 77779999999999999999999332211 233333334455555555543
|
|
| >cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.002 Score=60.67 Aligned_cols=118 Identities=19% Similarity=0.092 Sum_probs=71.2
Q ss_pred hhhcccccCCCHHHHHHHhhhhhccCCCCcccchhhhhccccccccCCChhhhHHhhhhhccccCCCChhhHHHHHhhhc
Q psy9003 305 DECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECH 384 (1276)
Q Consensus 305 ~~~~~a~~~gsi~~l~~Lv~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~ie~~~yLi~~~h~~~~~~~~e~~~~~~~~~~ 384 (1276)
|+.+.|...|+++++++|++..-..+.... ...+..+.|+..+.++++.+|+.....++..+.. ..+-.+
T Consensus 9 t~l~~a~~~~~~~~i~~li~~~~~~~~~~~-----~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~-----~~~~l~ 78 (126)
T cd00204 9 TPLHLAASNGHLEVVKLLLENGADVNAKDN-----DGRTPLHLAAKNGHLEIVKLLLEKGADVNARDKD-----GNTPLH 78 (126)
T ss_pred CHHHHHHHcCcHHHHHHHHHcCCCCCccCC-----CCCcHHHHHHHcCCHHHHHHHHHcCCCccccCCC-----CCCHHH
Confidence 444666667888888888877654321111 1224455666677788888888766433321111 112333
Q ss_pred ccccCCChhHHHHHhhhcccccCCCChhhhhcccccchhccccCCHhHHHhhc
Q psy9003 385 KAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLV 437 (1276)
Q Consensus 385 ~a~~~~~id~vkyLi~~~h~~~~~~~~~~~~~~vt~lh~a~~~~~~~~~~yli 437 (1276)
.|+..++.+++++|+...- +....+..+. |++|.|...++.+++++|+
T Consensus 79 ~a~~~~~~~~~~~L~~~~~-~~~~~~~~~~----~~l~~~~~~~~~~~~~~Ll 126 (126)
T cd00204 79 LAARNGNLDVVKLLLKHGA-DVNARDKDGR----TPLHLAAKNGHLEVVKLLL 126 (126)
T ss_pred HHHHcCcHHHHHHHHHcCC-CCcccCCCCC----CHHHHHHhcCCHHHHHHhC
Confidence 3444678888888887541 1122234444 8999999888888888875
|
The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. |
| >KOG0514|consensus | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.0061 Score=70.74 Aligned_cols=145 Identities=16% Similarity=0.052 Sum_probs=88.7
Q ss_pred ChhhHHHHHhhhcccccCCChhHHHHHhhhcccccCCCChhhhhcccccchhccccCCHhHHHhhcccccccccCCChhh
Q psy9003 372 TPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQ 451 (1276)
Q Consensus 372 ~~e~~~~~~~~~~~a~~~~~id~vkyLi~~~h~~~~~~~~~~~~~~vt~lh~a~~~~~~~~~~yli~~~~~~~~~~~~e~ 451 (1276)
++|+|+-.+.... +-++.+|.|.||.|- .+|. |.||+|..+.+-+||+-|++.+-|..-+-+.-.
T Consensus 238 ~pe~V~~~l~~f~----als~~lL~yvVNlaD-------sNGN----TALHYsVSHaNF~VV~~LLDSgvC~VD~qNrAG 302 (452)
T KOG0514|consen 238 DPEQVEDYLAYFE----ALSPPLLEYVVNLAD-------SNGN----TALHYAVSHANFDVVSILLDSGVCDVDQQNRAG 302 (452)
T ss_pred CHHHHHHHHHHHH----hcChHHHHHHhhhhc-------CCCC----eeeeeeecccchHHHHHHhccCccccccccccc
Confidence 4566655444333 358999999999984 5666 999999999999999999999999988776544
Q ss_pred HHHHH-HHHhHhccCCChhhHHHh-----h---------hhhcccccCCChhhhhhhhhhhhhhccCCCHHHHHHHhhhh
Q psy9003 452 LKYLV-DECHKAGLFGTPEQLKYL-----V---------DECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDEC 516 (1276)
Q Consensus 452 l~~l~-~~~~~~~~~~~~~~~~~~-----v---------~~~~~a~~~~~~e~~~~lv~~~~~~~~~~~~~~~~~~~t~~ 516 (1276)
-+-.+ ..+....-....++|+-| | |..--|..||-++-+|.|..-.+++|+++.+ .-|.+
T Consensus 303 YtpiMLaALA~lk~~~d~~vV~~LF~mgnVNaKAsQ~gQTALMLAVSHGr~d~vk~LLacgAdVNiQDdD-----GSTAL 377 (452)
T KOG0514|consen 303 YTPVMLAALAKLKQPADRTVVERLFKMGDVNAKASQHGQTALMLAVSHGRVDMVKALLACGADVNIQDDD-----GSTAL 377 (452)
T ss_pred ccHHHHHHHHhhcchhhHHHHHHHHhccCcchhhhhhcchhhhhhhhcCcHHHHHHHHHccCCCccccCC-----ccHHH
Confidence 22221 111111122223444444 1 3333344566666666666666666665531 12334
Q ss_pred cccccCCCHHHHHHHHhhhh
Q psy9003 517 HKAGLFGTPEQLKYLVDECH 536 (1276)
Q Consensus 517 ~~a~~~g~~e~~~~lv~~~~ 536 (1276)
-=|++||+.|++|+|.-.=.
T Consensus 378 MCA~EHGhkEivklLLA~p~ 397 (452)
T KOG0514|consen 378 MCAAEHGHKEIVKLLLAVPS 397 (452)
T ss_pred hhhhhhChHHHHHHHhccCc
Confidence 44556666666666654433
|
|
| >cd06597 GH31_transferase_CtsY CtsY (cyclic tetrasaccharide-synthesizing enzyme Y) is a bacterial 3-alpha-isomaltosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsZ | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.0063 Score=71.36 Aligned_cols=93 Identities=23% Similarity=0.369 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHcCCEEEEEEeccccCCc-ccCCC--cCC-CCCCCcccccCCCCCC----CCCCC--cCCCCCcHHHHHH
Q psy9003 1038 QLKYLVDECHKAGLYVLLDVVHSHASKN-VLDGL--NEF-DGTQACFFHDGPRGTH----PLWDS--RLFNYSEIEVLRF 1107 (1276)
Q Consensus 1038 EfK~LV~alHk~GI~VILDvV~NHt~~~-~~~~~--~~f-~g~~~~Yy~~~~~g~~----~~W~g--~~LN~~np~Vr~~ 1107 (1276)
+.++||+++|++|++|++=+.+- ...+ ..... ..+ .+....||..+.+|.. ..|.+ .-+|+.||++|++
T Consensus 86 dp~~mi~~Lh~~G~kv~l~v~P~-i~~~~~~~~~~~~~~~~~~~~g~~vk~~~G~~~~~~~~W~g~~~~~Dftnp~a~~W 164 (340)
T cd06597 86 NPKGMIDELHEQGVKVLLWQIPI-IKLRPHPHGQADNDEDYAVAQNYLVQRGVGKPYRIPGQWFPDSLMLDFTNPEAAQW 164 (340)
T ss_pred CHHHHHHHHHHCCCEEEEEecCc-cccccccccccchhHHHHHHCCEEEEcCCCCccccccccCCCceeecCCCHHHHHH
Confidence 67899999999999999855542 2111 00000 001 1222345544444431 24543 5689999999999
Q ss_pred HHHHHHHHHHhCCCcEEccCCccc
Q psy9003 1108 LLSNLRWYLDEYQFDGFRFDGVTS 1131 (1276)
Q Consensus 1108 Iidsl~~Wv~eygVDGFRfD~a~~ 1131 (1276)
..+.++.+++++|||||.+|+...
T Consensus 165 w~~~~~~~~~~~Gidg~w~D~~E~ 188 (340)
T cd06597 165 WMEKRRYLVDELGIDGFKTDGGEH 188 (340)
T ss_pred HHHHHHHHHHhcCCcEEEecCCCc
Confidence 999999999889999999997653
|
CtsY and CtsZ both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. |
| >PHA02736 Viral ankyrin protein; Provisional | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.0026 Score=65.20 Aligned_cols=127 Identities=11% Similarity=-0.039 Sum_probs=83.0
Q ss_pred hhhhcccccCCChhhhhhhhhhhhhhccCCCHHHH----HHHhhhhcccccCCCH---HHHHHHHhhhhhcCCCC-Ccch
Q psy9003 475 VDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQL----KYLVDECHKAGLFGTP---EQLKYLVDECHKAGLFG-TPEQ 546 (1276)
Q Consensus 475 v~~~~~a~~~~~~e~~~~lv~~~~~~~~~~~~~~~----~~~~t~~~~a~~~g~~---e~~~~lv~~~~~~~~~~-t~~~ 546 (1276)
.|..|.|...|+++.|-...+ ..+. ....++ +...|+.|.|...|++ |.+++|+..++++|..+ .
T Consensus 18 ~tpLh~A~~~g~~~~l~~~~~--~~~~--~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gadin~~~~~--- 90 (154)
T PHA02736 18 ENILHYLCRNGGVTDLLAFKN--AISD--ENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLMEWGADINGKERV--- 90 (154)
T ss_pred CCHHHHHHHhCCHHHHHHHHH--Hhcc--hhHHHHHHhcCCCCEEEEeecccCchhHHHHHHHHHHcCCCccccCCC---
Confidence 577888888887644322111 1111 111111 1237889999999987 56899999998888533 3
Q ss_pred hhhhhhhhhccccCCCHHHHHHHHHh-hhhccCCCChhhhhhhhhhhcccccCCCHHHHHHHHhhhhhcc
Q psy9003 547 LKYLVDECHKAGLFGTPEQLKYLVDE-CHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAG 615 (1276)
Q Consensus 547 l~~~~~~~~~~~~~~~~e~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~ 615 (1276)
+.-|..|.|...|+.|.+++|+.. +.++|.... +..|..+-|...|+.+.+++|+..+++.+
T Consensus 91 --~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~~-----~g~tpL~~A~~~~~~~i~~~Ll~~ga~~~ 153 (154)
T PHA02736 91 --FGNTPLHIAVYTQNYELATWLCNQPGVNMEILNY-----AFKTPYYVACERHDAKMMNILRAKGAQCK 153 (154)
T ss_pred --CCCcHHHHHHHhCCHHHHHHHHhCCCCCCccccC-----CCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence 334445556688999999999974 777773322 22455555668899999999998887764
|
|
| >PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3 | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.028 Score=67.33 Aligned_cols=126 Identities=17% Similarity=0.158 Sum_probs=76.0
Q ss_pred HHHHHHHHHHHHcCCEEEEEEeccccCCcccCCCcCCCCCCCcccccCCCCCCC-CCCCcCCCCCcHHHHHHHHHHHHHH
Q psy9003 1037 EQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHP-LWDSRLFNYSEIEVLRFLLSNLRWY 1115 (1276)
Q Consensus 1037 eEfK~LV~alHk~GI~VILDvV~NHt~~~~~~~~~~f~g~~~~Yy~~~~~g~~~-~W~g~~LN~~np~Vr~~Iidsl~~W 1115 (1276)
..|+.|++.+|++||+.=|=+-+--++.++. .-...|.|....+..... ......||+.+|+|++++.+.+...
T Consensus 104 ~Gl~~l~~~i~~~Gmk~GlW~ePe~v~~~S~-----l~~~hPdw~l~~~~~~~~~~r~~~vLD~~~pev~~~l~~~i~~l 178 (394)
T PF02065_consen 104 NGLKPLADYIHSLGMKFGLWFEPEMVSPDSD-----LYREHPDWVLRDPGRPPTLGRNQYVLDLSNPEVRDYLFEVIDRL 178 (394)
T ss_dssp THHHHHHHHHHHTT-EEEEEEETTEEESSSC-----HCCSSBGGBTCCTTSE-ECBTTBEEB-TTSHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHCCCeEEEEeccccccchhH-----HHHhCccceeecCCCCCcCcccceEEcCCCHHHHHHHHHHHHHH
Confidence 4699999999999999999887765555431 112234454332221111 1111248999999999999999999
Q ss_pred HHhCCCcEEccCCccccccccCCCCCCCCCCCccccCCCCCchHHHH---HHHHHHHHHhhCCCeEEEEE
Q psy9003 1116 LDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIY---LMVANKFLHDKYPEIITIAE 1182 (1276)
Q Consensus 1116 v~eygVDGFRfD~a~~L~~~d~g~g~~~~~~~~~~~~~~~d~~a~~F---l~el~~~Vr~~~PdvilIAE 1182 (1276)
++++|||.|.+|....+... .+. ..+.....+ +.++.+.+++.+|++++-.=
T Consensus 179 l~~~gidYiK~D~n~~~~~~-------~~~--------~~~~~~~~~~~~~y~l~~~L~~~~P~v~iE~C 233 (394)
T PF02065_consen 179 LREWGIDYIKWDFNRDITEA-------GSP--------SLPEGYHRYVLGLYRLLDRLRARFPDVLIENC 233 (394)
T ss_dssp HHHTT-SEEEEE-TS-TTS--------SST--------TS-GHHHHHHHHHHHHHHHHHHHTTTSEEEE-
T ss_pred HHhcCCCEEEeccccCCCCC-------CCC--------CchHHHHHHHHHHHHHHHHHHHhCCCcEEEec
Confidence 99999999999986655210 000 000111112 23466788899999877543
|
2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycosyl hydrolase family 27, family 31 and family 36 alpha-galactosidases form the glycosyl hydrolase clan GH-D (acc_GH from CAZY), a superfamily of alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases which are likely to share a common catalytic mechanism and structural topology. Alpha-galactosidase (3.2.1.22 from EC) (melibiase) [] catalyzes the hydrolysis of melibiose into galactose and glucose. In man, the deficiency of this enzyme is the cause of Fabry's disease (X-linked sphingolipidosis). Alpha-galactosidase is present in a variety of organisms. There is a considerable degree of similarity in the sequence of alpha-galactosidase from various eukaryotic species. Escherichia coli alpha-galactosidase (gene melA), which requires NAD and magnesium as cofactors, is not structurally related to the eukaryotic enzymes; by contrast, an Escherichia coli plasmid encoded alpha-galactosidase (gene rafA P16551 from SWISSPROT) [] contains a region of about 50 amino acids which is similar to a domain of the eukaryotic alpha-galactosidases. Alpha-N-acetylgalactosaminidase (3.2.1.49 from EC) [] catalyzes the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D- galactosaminides. In man, the deficiency of this enzyme is the cause of Schindler and Kanzaki diseases. The sequence of this enzyme is highly related to that of the eukaryotic alpha-galactosidases.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1KTC_A 1KTB_A 1UAS_A 3H55_A 3H53_A 3IGU_B 3H54_A 3LRM_A 3LRL_A 3LRK_A .... |
| >KOG0502|consensus | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.0048 Score=67.61 Aligned_cols=97 Identities=11% Similarity=-0.029 Sum_probs=68.5
Q ss_pred CCCcccchhhhhccccccccCCChhhhHHhhhhhcccc-CCCChhhHHHHHhhhcccccCCChhHHHHHhhhcccccCCC
Q psy9003 331 LFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAG-LFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFG 409 (1276)
Q Consensus 331 ~~~~~~~~~~~~~~~~~a~~~g~ie~~~yLi~~~h~~~-~~~~~e~~~~~~~~~~~a~~~~~id~vkyLi~~~h~~~~~~ 409 (1276)
||-+|+ ...|+.-||.+.|||++|.+|.+-..+-. +..--|.-.-+.+. -|-+|||++|.+----.|+ -
T Consensus 153 VN~~De---~GfTpLiWAaa~G~i~vV~fLL~~GAdp~~lgk~resALsLAt~------ggytdiV~lLL~r~vdVNv-y 222 (296)
T KOG0502|consen 153 VNACDE---FGFTPLIWAAAKGHIPVVQFLLNSGADPDALGKYRESALSLATR------GGYTDIVELLLTREVDVNV-Y 222 (296)
T ss_pred ccCccc---cCchHhHHHHhcCchHHHHHHHHcCCChhhhhhhhhhhHhHHhc------CChHHHHHHHHhcCCCcce-e
Confidence 555553 33677889999999999999988776332 22222222223333 4889999999864332332 2
Q ss_pred ChhhhhcccccchhccccCCHhHHHhhccccc
Q psy9003 410 TPEQLKYLVDECHKAGLFGTPEQLKYLVDECH 441 (1276)
Q Consensus 410 ~~~~~~~~vt~lh~a~~~~~~~~~~yli~~~~ 441 (1276)
+.+|. |||-+|++-++.+.||.||+.+.
T Consensus 223 DwNGg----TpLlyAvrgnhvkcve~Ll~sGA 250 (296)
T KOG0502|consen 223 DWNGG----TPLLYAVRGNHVKCVESLLNSGA 250 (296)
T ss_pred ccCCC----ceeeeeecCChHHHHHHHHhcCC
Confidence 67888 99999999999999999998763
|
|
| >KOG4369|consensus | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.019 Score=73.60 Aligned_cols=274 Identities=15% Similarity=0.012 Sum_probs=151.2
Q ss_pred CccccchhhhhhcccccCCCHHHHHHHhhhhh----ccC-------CCCc-------ccchhhhh-----------cccc
Q psy9003 296 TPEQLKYLVDECHKAGLFGTPEQLKYLVDECH----KAG-------LFGT-------PEQLKYLV-----------DECH 346 (1276)
Q Consensus 296 ~~~~~t~~~~~~~~a~~~gsi~~l~~Lv~~~~----~~~-------~~~~-------~~~~~~~~-----------~~~~ 346 (1276)
++..+++..|++|-|...|+-|.+-+||...- .++ |+.| ++|+++-. |..+
T Consensus 750 d~~Te~n~~t~LT~acaggh~e~vellv~rganiehrdkkgf~plImaatagh~tvV~~llk~ha~veaQsdrtkdt~lS 829 (2131)
T KOG4369|consen 750 DPLTEPNIKTNLTSACAGGHREEVELLVVRGANIEHRDKKGFVPLIMAATAGHITVVQDLLKAHADVEAQSDRTKDTMLS 829 (2131)
T ss_pred ccccCccccccccccccCccHHHHHHHHHhcccccccccccchhhhhhcccCchHHHHHHHhhhhhhhhhcccccCceEE
Confidence 55677888899999999999999999996633 222 1111 12222110 2333
Q ss_pred ccccCCChhhhHHhhhhhccccCCCChhhHHHHHhhhcccccCCChhHHHHHhhhcccccCCCChhhhhcccccchhccc
Q psy9003 347 KAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGL 426 (1276)
Q Consensus 347 ~a~~~g~ie~~~yLi~~~h~~~~~~~~e~~~~~~~~~~~a~~~~~id~vkyLi~~~h~~~~~~~~~~~~~~vt~lh~a~~ 426 (1276)
.||--|.-|+|-+|++..--...-+-.|..--....+ -|.++||+.|..-.-+++..+.. +..+.||..|+.
T Consensus 830 lacsggr~~vvelLl~~gankehrnvsDytPlsla~S-----ggy~~iI~~llS~GseInSrtgS---klgisPLmlatm 901 (2131)
T KOG4369|consen 830 LACSGGRTRVVELLLNAGANKEHRNVSDYTPLSLARS-----GGYTKIIHALLSSGSEINSRTGS---KLGISPLMLATM 901 (2131)
T ss_pred EecCCCcchHHHHHHHhhccccccchhhcCchhhhcC-----cchHHHHHHHhhccccccccccc---ccCcchhhhhhh
Confidence 4455555555555544332222111001000011111 25566666666555555533322 223356666665
Q ss_pred cCCHhHHHhhcccccccccCCChhhHHHHHHHHhHhccCC-ChhhHHHhhhhhcccccCCChhhhhhhhhhhhhhccCC-
Q psy9003 427 FGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFG-TPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFG- 504 (1276)
Q Consensus 427 ~~~~~~~~yli~~~~~~~~~~~~e~l~~l~~~~~~~~~~~-~~~~~~~~v~~~~~a~~~~~~e~~~~lv~~~~~~~~~~- 504 (1276)
+||-+.++.|+ +-+-+||-+. |.- =|..+-|+-+|-.|-+++|.+. .+|+.-
T Consensus 902 ngh~~at~~ll-------------------~~gsdiNaqIeTNr-----nTaltla~fqgr~evv~lLLa~--~anvehR 955 (2131)
T KOG4369|consen 902 NGHQAATLSLL-------------------QPGSDINAQIETNR-----NTALTLALFQGRPEVVFLLLAA--QANVEHR 955 (2131)
T ss_pred ccccHHHHHHh-------------------cccchhcccccccc-----ccceeeccccCcchHHHHHHHH--hhhhhhh
Confidence 55555555444 3333443100 000 2556677778877777776542 122211
Q ss_pred CHHHHHHHhhhhcccccCCCHHHHHHHHhhhhhcC---CCCCcc-hh--------------------------hhhhhhh
Q psy9003 505 TPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAG---LFGTPE-QL--------------------------KYLVDEC 554 (1276)
Q Consensus 505 ~~~~~~~~~t~~~~a~~~g~~e~~~~lv~~~~~~~---~~~t~~-~l--------------------------~~~~~~~ 554 (1276)
. |..+|.+-++.-.|-+|+=.+|++++++-| |-+|.+ .| +..||-.
T Consensus 956 a----ktgltplme~AsgGyvdvg~~li~~gad~nasPvp~T~dtalti~a~kGh~kfv~~lln~~atv~v~NkkG~T~L 1031 (2131)
T KOG4369|consen 956 A----KTGLTPLMEMASGGYVDVGNLLIAAGADTNASPVPNTWDTALTIPANKGHTKFVPKLLNGDATVRVPNKKGCTVL 1031 (2131)
T ss_pred c----ccCCcccchhhcCCccccchhhhhcccccccCCCCCcCCccceeecCCCchhhhHHhhCCccceecccCCCCccc
Confidence 0 012566666667777888888888888877 555544 11 2345555
Q ss_pred hccccCCCHHHHHHHHHhhhhcc--CCCChhhhhhhhhhhcccccCCCHHHHHHHHhhhhhc
Q psy9003 555 HKAGLFGTPEQLKYLVDECHKAG--LFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKA 614 (1276)
Q Consensus 555 ~~~~~~~~~e~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~ 614 (1276)
--|+.-|-+-.+-.||+..+++. .|+|.. |+ --|.++|+.+.||+.|--+--+
T Consensus 1032 wla~~Gg~lss~~il~~~~ad~d~qdnr~~S-----~~--maafRKgh~~iVk~mv~~atqf 1086 (2131)
T KOG4369|consen 1032 WLASAGGALSSCPILVSSVADADQQDNRTNS-----RT--MAAFRKGHFAIVKKMVPPATQF 1086 (2131)
T ss_pred chhccCCccccchHHhhcccChhhhhccccc-----cc--HHHHHhchhheeccccCchhcC
Confidence 55666777788888888888887 777765 33 2344788899999888765543
|
|
| >cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.0094 Score=68.72 Aligned_cols=87 Identities=23% Similarity=0.481 Sum_probs=62.6
Q ss_pred HHHHHHHHHHcCCEEEEEEeccccCCcccCCCcCCC-CCCCcccccCCCCC----CCCCCC--cCCCCCcHHHHHHHHHH
Q psy9003 1039 LKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFD-GTQACFFHDGPRGT----HPLWDS--RLFNYSEIEVLRFLLSN 1111 (1276)
Q Consensus 1039 fK~LV~alHk~GI~VILDvV~NHt~~~~~~~~~~f~-g~~~~Yy~~~~~g~----~~~W~g--~~LN~~np~Vr~~Iids 1111 (1276)
.++||+++|++|+++++=+-+ +...+.. .|. +....||-.+++|. ...|.+ .-+|+.||++|+++.+.
T Consensus 72 p~~mi~~l~~~G~k~~l~i~P-~i~~~s~----~~~e~~~~g~~vk~~~g~~~~~~~~w~g~~~~~Dftnp~a~~w~~~~ 146 (303)
T cd06592 72 PKGMIDQLHDLGFRVTLWVHP-FINTDSE----NFREAVEKGYLVSEPSGDIPALTRWWNGTAAVLDFTNPEAVDWFLSR 146 (303)
T ss_pred HHHHHHHHHHCCCeEEEEECC-eeCCCCH----HHHhhhhCCeEEECCCCCCCcccceecCCcceEeCCCHHHHHHHHHH
Confidence 689999999999999998876 3333321 122 22334554444431 123443 46899999999999999
Q ss_pred HHHHHHhCCCcEEccCCcc
Q psy9003 1112 LRWYLDEYQFDGFRFDGVT 1130 (1276)
Q Consensus 1112 l~~Wv~eygVDGFRfD~a~ 1130 (1276)
++..+.++|||||-+|...
T Consensus 147 ~~~~~~~~Gvdg~w~D~~E 165 (303)
T cd06592 147 LKSLQEKYGIDSFKFDAGE 165 (303)
T ss_pred HHHHHHHhCCcEEEeCCCC
Confidence 9999988999999999755
|
Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. |
| >cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.031 Score=64.32 Aligned_cols=89 Identities=16% Similarity=0.289 Sum_probs=62.6
Q ss_pred HHHHHHHHHHcCCEEEEEEeccccCCcccCCCcCCC-CCCCcccccCCCCCC---CCCC--CcCCCCCcHHHHHHHHHHH
Q psy9003 1039 LKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFD-GTQACFFHDGPRGTH---PLWD--SRLFNYSEIEVLRFLLSNL 1112 (1276)
Q Consensus 1039 fK~LV~alHk~GI~VILDvV~NHt~~~~~~~~~~f~-g~~~~Yy~~~~~g~~---~~W~--g~~LN~~np~Vr~~Iidsl 1112 (1276)
.++||+++|++|++|++-+.+ +...+.+ .|. +....||..++++.. ..|. +.-+|+.||++|+++.+.+
T Consensus 68 ~~~~i~~l~~~G~~~~~~~~P-~i~~~~~----~~~e~~~~g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~ 142 (308)
T cd06593 68 PEGMLSRLKEKGFKVCLWINP-YIAQKSP----LFKEAAEKGYLVKKPDGSVWQWDLWQPGMGIIDFTNPDACKWYKDKL 142 (308)
T ss_pred HHHHHHHHHHCCCeEEEEecC-CCCCCch----hHHHHHHCCeEEECCCCCeeeecccCCCcccccCCCHHHHHHHHHHH
Confidence 579999999999999998875 4444321 111 122344444333332 2333 3568999999999999999
Q ss_pred HHHHHhCCCcEEccCCccccc
Q psy9003 1113 RWYLDEYQFDGFRFDGVTSML 1133 (1276)
Q Consensus 1113 ~~Wv~eygVDGFRfD~a~~L~ 1133 (1276)
+.+++ +|||||-+|....+.
T Consensus 143 ~~~~~-~Gid~~~~D~~e~~p 162 (308)
T cd06593 143 KPLLD-MGVDCFKTDFGERIP 162 (308)
T ss_pred HHHHH-hCCcEEecCCCCCCC
Confidence 98887 799999999876553
|
YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes. |
| >cd06594 GH31_glucosidase_YihQ YihQ is a bacterial alpha-glucosidase with a conserved glycosyl hydrolase family 31 (GH31) domain that catalyzes the release of an alpha-glucosyl residue from the non-reducing end of alpha-glucoside substrates such as alpha-glucosyl fluoride | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.009 Score=69.42 Aligned_cols=91 Identities=12% Similarity=0.172 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHcCCEEEEEEeccccCCcccCCCcCC-CCCCCcccccCCCCC---CCCCC--CcCCCCCcHHHHHHHHHH
Q psy9003 1038 QLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEF-DGTQACFFHDGPRGT---HPLWD--SRLFNYSEIEVLRFLLSN 1111 (1276)
Q Consensus 1038 EfK~LV~alHk~GI~VILDvV~NHt~~~~~~~~~~f-~g~~~~Yy~~~~~g~---~~~W~--g~~LN~~np~Vr~~Iids 1111 (1276)
+.++||+++|++|++|++-+. .+...+... .| .+....||..+++|. ...|. +.-+|+.||++|++..+.
T Consensus 72 dp~~mi~~Lh~~G~~~~~~i~-P~v~~~~~~---~y~~~~~~g~~vk~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~ 147 (317)
T cd06594 72 GLDELIEELKARGIRVLTYIN-PYLADDGPL---YYEEAKDAGYLVKDADGSPYLVDFGEFDCGVLDLTNPAARDWFKQV 147 (317)
T ss_pred CHHHHHHHHHHCCCEEEEEec-CceecCCch---hHHHHHHCCeEEECCCCCeeeeccCCCCceeeecCCHHHHHHHHHH
Confidence 467999999999999999554 444333211 01 122234555444443 23343 456899999999999999
Q ss_pred HHHHHHhCCCcEEccCCcccc
Q psy9003 1112 LRWYLDEYQFDGFRFDGVTSM 1132 (1276)
Q Consensus 1112 l~~Wv~eygVDGFRfD~a~~L 1132 (1276)
++..+.++|||||-+|+-..+
T Consensus 148 ~~~~~~~~Gvdg~w~D~~E~~ 168 (317)
T cd06594 148 IKEMLLDLGLSGWMADFGEYL 168 (317)
T ss_pred HHHHhhhcCCcEEEecCCCCC
Confidence 999877799999999976544
|
Orthologs of YihQ that have not yet been functionally characterized are present in plants and fungi. YihQ has sequence similarity to other GH31 enzymes such as CtsZ, a 6-alpha-glucosyltransferase from Bacillus globisporus, and YicI, an alpha-xylosidase from Echerichia coli. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. |
| >PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3 | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.0044 Score=68.87 Aligned_cols=37 Identities=38% Similarity=0.508 Sum_probs=33.9
Q ss_pred ChHHHHHHHHHHHHhcCc-----------------------------CCCHHHHHHHHHHHHHcCCC
Q psy9003 143 GTPEQLKYLVDECHKAGL-----------------------------FGTPEQLKYLVDECHKAGLF 180 (1276)
Q Consensus 143 ~y~e~a~~li~y~~~~~y-----------------------------ygtp~~l~~~vd~~h~~~i~ 180 (1276)
+++-|.++| +|+|++|+ |||.+||+.||++||+.||+
T Consensus 2 d~~gi~~kL-dyl~~lGv~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~d~~~Lv~~~h~~gi~ 67 (316)
T PF00128_consen 2 DFRGIIDKL-DYLKDLGVNAIWLSPIFESPNGYHGYDPSDYYAVDPRFGTMEDFKELVDAAHKRGIK 67 (316)
T ss_dssp SHHHHHHTH-HHHHHHTESEEEESS-EESSSSTTTTSESEEEEESTTTBHHHHHHHHHHHHHHTTCE
T ss_pred CHHHHHHhh-HHHHHcCCCceecccccccccccccccceeeeccccccchhhhhhhhhhccccccce
Confidence 467788885 89999998 99999999999999999999
|
2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A .... |
| >smart00642 Aamy Alpha-amylase domain | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.0079 Score=63.77 Aligned_cols=37 Identities=32% Similarity=0.428 Sum_probs=32.9
Q ss_pred ChHHHHHHHHHHHHhcCc--------------------------------CCCHHHHHHHHHHHHHcCCC
Q psy9003 143 GTPEQLKYLVDECHKAGL--------------------------------FGTPEQLKYLVDECHKAGLF 180 (1276)
Q Consensus 143 ~y~e~a~~li~y~~~~~y--------------------------------ygtp~~l~~~vd~~h~~~i~ 180 (1276)
+++.|+++|- |++++|+ |||++||+.||++||++||+
T Consensus 17 ~~~gi~~~l~-yl~~lG~~~I~l~Pi~~~~~~~~~~~gY~~~d~~~i~~~~Gt~~d~~~lv~~~h~~Gi~ 85 (166)
T smart00642 17 DLQGIIEKLD-YLKDLGVTAIWLSPIFESPQGYPSYHGYDISDYKQIDPRFGTMEDFKELVDAAHARGIK 85 (166)
T ss_pred CHHHHHHHHH-HHHHCCCCEEEECcceeCCCCCCCCCCcCccccCCCCcccCCHHHHHHHHHHHHHCCCE
Confidence 5799999985 9999977 89999999999999999988
|
|
| >PF02806 Alpha-amylase_C: Alpha amylase, C-terminal all-beta domain; InterPro: IPR006048 O-Glycosyl hydrolases 3 | Back alignment and domain information |
|---|
Probab=95.60 E-value=0.012 Score=56.07 Aligned_cols=39 Identities=31% Similarity=0.595 Sum_probs=34.0
Q ss_pred eeEeecCCCeEEEEEcCc-----EEEEEeCCCCCCccccccccC
Q psy9003 1237 YVSTKHEGDKVIIFERAG-----LLFAFNFNGTQSFTDYRGKSN 1275 (1276)
Q Consensus 1237 ~~l~nHD~~RVlsf~R~~-----ll~v~N~~~~~s~~~y~~~~~ 1275 (1276)
|+...++.++|++|.|.+ ++||+||++.+.+.+|++|+|
T Consensus 1 Wi~~~d~~~~v~af~R~~~~~~~~lvv~Nf~~~~~~~~~~~~~p 44 (95)
T PF02806_consen 1 WIDHDDNENNVIAFERKDKGDDRVLVVFNFSPEAVYEDYRIGVP 44 (95)
T ss_dssp EEEEEEESSSEEEEEETTTETTEEEEEEESSSS-EEEEEEECSS
T ss_pred CcccccCCCCEEEEEEcCCCCCEEEEEEECCCcccceeEEeCCC
Confidence 466788899999999954 999999999989999999997
|
2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Alpha-amylase is classified as family 13 of the glycosyl hydrolases and is present in archaea, bacteria, plants and animals. Alpha-amylase is an essential enzyme in alpha-glucan metabolism, acting to catalyse the hydrolysis of alpha-1,4-glucosidic bonds of glycogen, starch and related polysaccharides. Although all alpha-amylases possess the same catalytic function, they can vary with respect to sequence. In general, they are composed of three domains: a TIM barrel containing the active site residues and chloride ion-binding site (domain A), a long loop region inserted between the third beta strand and the alpha-helix of domain A that contains calcium-binding site(s) (domain B), and a C-terminal beta-sheet domain that appears to show some variability in sequence and length between amylases (domain C) []. Amylases have at least one conserved calcium-binding site, as calcium is essential for the stability of the enzyme. The chloride-binding functions to activate the enzyme, which acts by a two-step mechanism involving a catalytic nucleophile base (usually an Asp) and a catalytic proton donor (usually a Glu) that are responsible for the formation of the beta-linked glycosyl-enzyme intermediate. This entry represents the all-beta domain that is found in several alpha-amylases, usually at the C terminus, and which forms a Greek key beta-barrel fold in these enzymes []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 1TCM_A 1CXL_A 1PJ9_A 1OT2_A 2DIJ_A 1CGV_A 1CXK_A 1PEZ_A 1CGX_A 2CXG_A .... |
| >PF13199 Glyco_hydro_66: Glycosyl hydrolase family 66; PDB: 3VMO_A 3VMN_A 3VMP_A | Back alignment and domain information |
|---|
Probab=95.42 E-value=0.079 Score=66.02 Aligned_cols=92 Identities=20% Similarity=0.398 Sum_probs=52.2
Q ss_pred CHHHHHHHHHHHHHcCCEEEE-EEeccccCCcccCCCcCCCCCCCccc--ccCCCCC------CCCCCC--cCCCCCcHH
Q psy9003 1035 TPEQLKYLVDECHKAGLYVLL-DVVHSHASKNVLDGLNEFDGTQACFF--HDGPRGT------HPLWDS--RLFNYSEIE 1103 (1276)
Q Consensus 1035 t~eEfK~LV~alHk~GI~VIL-DvV~NHt~~~~~~~~~~f~g~~~~Yy--~~~~~g~------~~~W~g--~~LN~~np~ 1103 (1276)
..+-.|.+|+++|+.||++|. .+++. ...+ ..-+|..+.|+ ..+.... ...|.. --+|..||.
T Consensus 168 ~~~~Vk~yI~~ah~~Gmkam~Ynmiya-a~~~-----~~~~gv~~eW~ly~d~~~~~~~~~~l~~~w~s~lyl~dP~N~~ 241 (559)
T PF13199_consen 168 STSTVKDYINAAHKYGMKAMAYNMIYA-ANNN-----YEEDGVSPEWGLYKDDSHSNQDTYDLPDGWPSDLYLMDPGNPE 241 (559)
T ss_dssp EHHHHHHHHHHHHHTT-EEEEEEESSE-EETT-------S--SS-GGBEEESSSBTSB-EEEETT-E--EEEEB-TT-HH
T ss_pred hHHHHHHHHHHHHHcCcceehhHhhhc-cccC-----cccccCCchhhhhhccCCCccceeecCcccccceEEecCCCHH
Confidence 368899999999999999875 33332 1111 01133334333 2221110 123543 356899999
Q ss_pred HHHHHHHHHHHHHHhCCCcEEccCCcccc
Q psy9003 1104 VLRFLLSNLRWYLDEYQFDGFRFDGVTSM 1132 (1276)
Q Consensus 1104 Vr~~Iidsl~~Wv~eygVDGFRfD~a~~L 1132 (1276)
.|+||++.+...++++|+|||.+|..+..
T Consensus 242 WQ~yI~~q~~~~~~~~gFDG~hlDq~G~~ 270 (559)
T PF13199_consen 242 WQNYIINQMNKAIQNFGFDGWHLDQLGNR 270 (559)
T ss_dssp HHHHHHHHHHHHHHHHT--EEEEE-S--E
T ss_pred HHHHHHHHHHHHHHccCCceEeeeccCCC
Confidence 99999999999999999999999987743
|
|
| >cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase | Back alignment and domain information |
|---|
Probab=95.40 E-value=0.03 Score=65.76 Aligned_cols=90 Identities=18% Similarity=0.282 Sum_probs=60.3
Q ss_pred HHHHHHHHHcCCEEEEEEeccccCCcc-cCCCcCC-CCCCCcccccCCCCCC---CCCCC--cCCCCCcHHHHHHHHHHH
Q psy9003 1040 KYLVDECHKAGLYVLLDVVHSHASKNV-LDGLNEF-DGTQACFFHDGPRGTH---PLWDS--RLFNYSEIEVLRFLLSNL 1112 (1276)
Q Consensus 1040 K~LV~alHk~GI~VILDvV~NHt~~~~-~~~~~~f-~g~~~~Yy~~~~~g~~---~~W~g--~~LN~~np~Vr~~Iidsl 1112 (1276)
++||+++|++|++|++=+.+. ...+. ......| .+....||..+.+|.. ..|.+ .-+|+.||+++++..+.+
T Consensus 69 ~~mi~~L~~~G~k~~~~i~P~-v~~~~~~~~~~~~~e~~~~g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~ 147 (339)
T cd06602 69 PEFVDELHANGQHYVPILDPA-ISANEPTGSYPPYDRGLEMDVFIKNDDGSPYIGKVWPGYTVFPDFLNPNTQEWWTDEI 147 (339)
T ss_pred HHHHHHHHHCCCEEEEEEeCc-cccCcCCCCCHHHHHHHHCCeEEECCCCCEEEEEeCCCCCcCcCCCCHHHHHHHHHHH
Confidence 799999999999999976533 33221 0000111 1222345544444432 33443 457999999999999999
Q ss_pred HHHHHhCCCcEEccCCcc
Q psy9003 1113 RWYLDEYQFDGFRFDGVT 1130 (1276)
Q Consensus 1113 ~~Wv~eygVDGFRfD~a~ 1130 (1276)
+..++++|||||-+|...
T Consensus 148 ~~~~~~~Gvdg~w~D~~E 165 (339)
T cd06602 148 KDFHDQVPFDGLWIDMNE 165 (339)
T ss_pred HHHHhcCCCcEEEecCCC
Confidence 999998999999999644
|
MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of |
| >cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II | Back alignment and domain information |
|---|
Probab=95.37 E-value=0.025 Score=65.78 Aligned_cols=90 Identities=18% Similarity=0.244 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHcCCEEEEEEeccccCCcccCCCcCC-CCCCCcccccCCCCC---CCCCCC--cCCCCCcHHHHHHHHHH
Q psy9003 1038 QLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEF-DGTQACFFHDGPRGT---HPLWDS--RLFNYSEIEVLRFLLSN 1111 (1276)
Q Consensus 1038 EfK~LV~alHk~GI~VILDvV~NHt~~~~~~~~~~f-~g~~~~Yy~~~~~g~---~~~W~g--~~LN~~np~Vr~~Iids 1111 (1276)
+.++||+++|++|++|++=+.+- ...+... ..| .+....||...++|. ...|.+ .-+|+.||+++++..+.
T Consensus 65 dp~~~i~~l~~~g~k~~~~~~P~-i~~~~~~--~~~~~~~~~~~~v~~~~g~~~~~~~w~G~~~~~Dftnp~a~~ww~~~ 141 (317)
T cd06600 65 EPKKLIDELHKRNVKLVTIVDPG-IRVDQNY--SPFLSGMDKGKFCEIESGELFVGKMWPGTTVYPDFTNPDTREWWAGL 141 (317)
T ss_pred CHHHHHHHHHHCCCEEEEEeecc-ccCCCCC--hHHHHHHHCCEEEECCCCCeEEEeecCCCccccCCCChHHHHHHHHH
Confidence 34699999999999999966443 3322110 011 122334554443332 233544 46899999999999999
Q ss_pred HHHHHHhCCCcEEccCCcc
Q psy9003 1112 LRWYLDEYQFDGFRFDGVT 1130 (1276)
Q Consensus 1112 l~~Wv~eygVDGFRfD~a~ 1130 (1276)
++..+.++|||||-+|...
T Consensus 142 ~~~~~~~~gvdg~w~D~~E 160 (317)
T cd06600 142 FSEWLNSQGVDGIWLDMNE 160 (317)
T ss_pred HHHHhhcCCCceEEeeCCC
Confidence 9998878999999999643
|
MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do |
| >cd02859 AMPKbeta_GBD_like AMP-activated protein kinase (AMPK) beta subunit glycogen binding domain (GBD) | Back alignment and domain information |
|---|
Probab=95.35 E-value=0.028 Score=52.54 Aligned_cols=42 Identities=17% Similarity=0.333 Sum_probs=32.3
Q ss_pred cEEEEEEccCCceEEEEeeccCCCcc----e-----EEEEEccCccccc-eEEEEE
Q psy9003 74 SVRCFEWAPSAQQLYLTGNVSLTPWS----I-----MEEASLSSIKLIQ-SIQYIL 119 (1276)
Q Consensus 74 g~~f~~wAP~A~~v~l~gdfn~~~w~----m-----~~~~~~~~~~~g~-~yky~i 119 (1276)
-|+|+-.+ +|+.|+|+|+| ++|+ | -|++.+ .+++|. .|||+|
T Consensus 3 ~v~f~~~~-~a~~V~v~G~F--~~W~~~~pm~~~~~~~~~~~-~L~~g~y~YkF~V 54 (79)
T cd02859 3 PTTFVWPG-GGKEVYVTGSF--DNWKKKIPLEKSGKGFSATL-RLPPGKYQYKFIV 54 (79)
T ss_pred EEEEEEcC-CCcEEEEEEEc--CCCCccccceECCCCcEEEE-EcCCCCEEEEEEE
Confidence 37888888 89999999999 6666 5 588877 578884 455554
|
AMPK is a metabolic stress sensing protein that senses AMP/ATP and has recently been found to act as a glycogen sensor as well. The protein functions as a alpha-beta-gamma heterotrimer. This domain is the glycogen binding domain of the beta subunit. |
| >cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins | Back alignment and domain information |
|---|
Probab=95.28 E-value=0.023 Score=53.46 Aligned_cols=118 Identities=19% Similarity=0.104 Sum_probs=69.6
Q ss_pred hhhhcccccCCCHHHHHHHHhhhhhcCCCCCcchhhhhhhhhhccccCCCHHHHHHHHHhhhhccCCCChhhhhhhhhhh
Q psy9003 513 VDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDEC 592 (1276)
Q Consensus 513 ~t~~~~a~~~g~~e~~~~lv~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 592 (1276)
.|+.+.|+..|+++.+++|+..+..++..+. ...+..+.|...++++.+.+|+..++.++...... .+..
T Consensus 8 ~t~l~~a~~~~~~~~i~~li~~~~~~~~~~~-----~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~-----~~~l 77 (126)
T cd00204 8 RTPLHLAASNGHLEVVKLLLENGADVNAKDN-----DGRTPLHLAAKNGHLEIVKLLLEKGADVNARDKDG-----NTPL 77 (126)
T ss_pred CCHHHHHHHcCcHHHHHHHHHcCCCCCccCC-----CCCcHHHHHHHcCCHHHHHHHHHcCCCccccCCCC-----CCHH
Confidence 4667777777888888888877776653333 33344455557777788888887776444222222 3555
Q ss_pred cccccCCCHHHHHHHHhhhhhccCCCChhhhhhhHHHhhhccCCCCHHHHHHH
Q psy9003 593 HKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYL 645 (1276)
Q Consensus 593 ~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 645 (1276)
+-|...++.+.+++|+..+.+++.+-... ++..+-|...+..+.+++|
T Consensus 78 ~~a~~~~~~~~~~~L~~~~~~~~~~~~~~-----~~~l~~~~~~~~~~~~~~L 125 (126)
T cd00204 78 HLAARNGNLDVVKLLLKHGADVNARDKDG-----RTPLHLAAKNGHLEVVKLL 125 (126)
T ss_pred HHHHHcCcHHHHHHHHHcCCCCcccCCCC-----CCHHHHHHhcCCHHHHHHh
Confidence 66667777888888877764443322211 2333333333555555544
|
The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. |
| >KOG0515|consensus | Back alignment and domain information |
|---|
Probab=95.28 E-value=0.023 Score=68.45 Aligned_cols=48 Identities=15% Similarity=0.133 Sum_probs=35.5
Q ss_pred ChhhhhcccccchhccccCCHhHHHhhcccccccccCCChhhHHHHHHHHhHh
Q psy9003 410 TPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKA 462 (1276)
Q Consensus 410 ~~~~~~~~vt~lh~a~~~~~~~~~~yli~~~~~~~~~~~~e~l~~l~~~~~~~ 462 (1276)
|..|+ ||||+||.-++.-+++.||..+.|.. +.|+...+-.++.|+|.
T Consensus 613 DSdGW----TPLHCAASCNnv~~ckqLVe~Gaavf-AsTlSDmeTa~eKCee~ 660 (752)
T KOG0515|consen 613 DSDGW----TPLHCAASCNNVPMCKQLVESGAAVF-ASTLSDMETAAEKCEEM 660 (752)
T ss_pred cCCCC----chhhhhhhcCchHHHHHHHhccceEE-eeecccccchhhhcchh
Confidence 45678 99999999899999999998887764 45555545555555554
|
|
| >cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate | Back alignment and domain information |
|---|
Probab=95.20 E-value=0.032 Score=64.87 Aligned_cols=87 Identities=13% Similarity=0.242 Sum_probs=58.6
Q ss_pred HHHHHHHHHHcCCEEEEEEeccccCCcccCCCcCCC-CCCCcccccCCCCC--CCCCCC--cCCCCCcHHHHHHHHHHHH
Q psy9003 1039 LKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFD-GTQACFFHDGPRGT--HPLWDS--RLFNYSEIEVLRFLLSNLR 1113 (1276)
Q Consensus 1039 fK~LV~alHk~GI~VILDvV~NHt~~~~~~~~~~f~-g~~~~Yy~~~~~g~--~~~W~g--~~LN~~np~Vr~~Iidsl~ 1113 (1276)
.++||+++|++|++|++-+. .+...+.. .|. +....||..++++. ...|.+ ..+|+.||+++++..+.++
T Consensus 68 p~~mi~~L~~~G~kv~~~i~-P~v~~~~~----~y~e~~~~g~~v~~~~g~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~ 142 (319)
T cd06591 68 PKAMVRELHEMNAELMISIW-PTFGPETE----NYKEMDEKGYLIKTDRGPRVTMQFGGNTRFYDATNPEAREYYWKQLK 142 (319)
T ss_pred HHHHHHHHHHCCCEEEEEec-CCcCCCCh----hHHHHHHCCEEEEcCCCCeeeeeCCCCccccCCCCHHHHHHHHHHHH
Confidence 46899999999999999554 33433221 111 11234444443332 234544 5689999999999888877
Q ss_pred HHHHhCCCcEEccCCcc
Q psy9003 1114 WYLDEYQFDGFRFDGVT 1130 (1276)
Q Consensus 1114 ~Wv~eygVDGFRfD~a~ 1130 (1276)
..+.++|||||-+|...
T Consensus 143 ~~~~~~Gvdg~w~D~~E 159 (319)
T cd06591 143 KNYYDKGVDAWWLDAAE 159 (319)
T ss_pred HHhhcCCCcEEEecCCC
Confidence 66667999999999865
|
XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes. |
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=94.98 E-value=10 Score=48.75 Aligned_cols=221 Identities=12% Similarity=0.097 Sum_probs=133.3
Q ss_pred cCCChhhhhhhhhhhhhhccCCCHHHHHHHhhhhcccccCCCHHHHHHHHhhhhhcCCCCCcchhhhhhhhhhccccCCC
Q psy9003 483 LFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGT 562 (1276)
Q Consensus 483 ~~~~~e~~~~lv~~~~~~~~~~~~~~~~~~~t~~~~a~~~g~~e~~~~lv~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~ 562 (1276)
.+|..|..--+...+.+.+...+.-..-.++..+ +..|.++..+-+.+.+-+.++........-.|+-.. ..|.
T Consensus 302 ~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~---~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~---k~G~ 375 (697)
T PLN03081 302 LHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIF---SRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYS---KWGR 375 (697)
T ss_pred hCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH---HhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHH---HCCC
Confidence 3466666555666666666544433222233333 345677777777777777774433223333333333 3688
Q ss_pred HHHHHHHHHhhhhccCCCChhhhhhhhhhhcccccCCCHHHHHHHHhhhhhccCCCChhhhhhhHHHhhhccCCCCHHHH
Q psy9003 563 PEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQL 642 (1276)
Q Consensus 563 ~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 642 (1276)
++.+..+.+.+.+.|+..=-.++..-| .+|..+.+--+++.|.+.|.+-+..--.-++.+|.++ |.+|++
T Consensus 376 ~~~A~~vf~~m~~~d~~t~n~lI~~y~-------~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~---g~~~~a 445 (697)
T PLN03081 376 MEDARNVFDRMPRKNLISWNALIAGYG-------NHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYS---GLSEQG 445 (697)
T ss_pred HHHHHHHHHhCCCCCeeeHHHHHHHHH-------HcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcC---CcHHHH
Confidence 888888888888776544334444444 6788899988999998888877766445667777764 668888
Q ss_pred HHHHHHHHhh-cCCCChHHHhhhhhhhhhcccCCChhHHHHHHHHHHhhccCCChhHHHhhHHHHhhcccCCCHHHHHHH
Q psy9003 643 KYLVDECHKA-GLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYL 721 (1276)
Q Consensus 643 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 721 (1276)
..+++.|.+. |---+.+.-.-+++.+-++| .++.+.-+++.+- --.+...-..++.+|. .||.+|.++..
T Consensus 446 ~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G---~~~eA~~~~~~~~---~~p~~~~~~~Ll~a~~---~~g~~~~a~~~ 516 (697)
T PLN03081 446 WEIFQSMSENHRIKPRAMHYACMIELLGREG---LLDEAYAMIRRAP---FKPTVNMWAALLTACR---IHKNLELGRLA 516 (697)
T ss_pred HHHHHHHHHhcCCCCCccchHhHHHHHHhcC---CHHHHHHHHHHCC---CCCCHHHHHHHHHHHH---HcCCcHHHHHH
Confidence 8888888763 32333334444666765554 4666655554432 1122223344555543 46777777777
Q ss_pred HHHHHhc
Q psy9003 722 VDECHKA 728 (1276)
Q Consensus 722 ~~~~~~~ 728 (1276)
.+++.+-
T Consensus 517 ~~~l~~~ 523 (697)
T PLN03081 517 AEKLYGM 523 (697)
T ss_pred HHHHhCC
Confidence 7776543
|
|
| >cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37 | Back alignment and domain information |
|---|
Probab=94.84 E-value=0.045 Score=63.58 Aligned_cols=88 Identities=14% Similarity=0.220 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHcCCEEEEEEeccccCCcccCCCcCCC-CCCCcccccCCCCC----CCCCCC--cCCCCCcHHHHHHHHH
Q psy9003 1038 QLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFD-GTQACFFHDGPRGT----HPLWDS--RLFNYSEIEVLRFLLS 1110 (1276)
Q Consensus 1038 EfK~LV~alHk~GI~VILDvV~NHt~~~~~~~~~~f~-g~~~~Yy~~~~~g~----~~~W~g--~~LN~~np~Vr~~Iid 1110 (1276)
+.++||+++|++|++|++-+.+- ...+.+ .|+ +....||..+.++. ...|.+ ..+|+.||+++++..+
T Consensus 74 dp~~mi~~L~~~g~k~~~~i~P~-i~~~~~----~y~e~~~~g~~v~~~~g~~~~~~~~w~g~~~~~Dftnp~a~~ww~~ 148 (317)
T cd06599 74 DPAAFVAKFHERGIRLAPNIKPG-LLQDHP----RYKELKEAGAFIKPPDGREPSIGQFWGGVGSFVDFTNPEGREWWKE 148 (317)
T ss_pred CHHHHHHHHHHCCCEEEEEeCCc-ccCCCH----HHHHHHHCCcEEEcCCCCCcceecccCCCeEeecCCChHHHHHHHH
Confidence 45699999999999999855443 333221 111 12234554333322 123433 4689999999999999
Q ss_pred HHHHHHHhCCCcEEccCCcc
Q psy9003 1111 NLRWYLDEYQFDGFRFDGVT 1130 (1276)
Q Consensus 1111 sl~~Wv~eygVDGFRfD~a~ 1130 (1276)
.++.-+.+.|||||-+|...
T Consensus 149 ~~~~~~~~~Gvdg~w~D~~E 168 (317)
T cd06599 149 GVKEALLDLGIDSTWNDNNE 168 (317)
T ss_pred HHHHHHhcCCCcEEEecCCC
Confidence 99777777899999999754
|
The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. |
| >TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase | Back alignment and domain information |
|---|
Probab=94.67 E-value=0.028 Score=69.94 Aligned_cols=20 Identities=35% Similarity=0.504 Sum_probs=11.0
Q ss_pred CCCHHHHHHHHHHHHHcCCC
Q psy9003 161 FGTPEQLKYLVDECHKAGLF 180 (1276)
Q Consensus 161 ygtp~~l~~~vd~~h~~~i~ 180 (1276)
|||.+||+.||++||++||+
T Consensus 71 ~Gt~~~~~~lv~~ah~~gi~ 90 (543)
T TIGR02403 71 FGTMADFEELVSEAKKRNIK 90 (543)
T ss_pred cCCHHHHHHHHHHHHHCCCE
Confidence 55555555555555555555
|
Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor. |
| >PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A | Back alignment and domain information |
|---|
Probab=94.54 E-value=0.012 Score=51.11 Aligned_cols=50 Identities=12% Similarity=0.022 Sum_probs=26.1
Q ss_pred HhhhcccccCCCChhhhhcccccchhccccCCHhHHHhhcccccccccCCChhhH
Q psy9003 398 LVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQL 452 (1276)
Q Consensus 398 Li~~~h~~~~~~~~~~~~~~vt~lh~a~~~~~~~~~~yli~~~~~~~~~~~~e~l 452 (1276)
|++...+++...+..+. ||||.|+..|+.++|++|+ ...|++-..+.+..
T Consensus 1 LL~~~~~~~n~~d~~G~----T~LH~A~~~g~~~~v~~Ll-~~g~d~~~~d~~G~ 50 (56)
T PF13857_consen 1 LLEHGPADVNAQDKYGN----TPLHWAARYGHSEVVRLLL-QNGADPNAKDKDGQ 50 (56)
T ss_dssp -----T--TT---TTS------HHHHHHHHT-HHHHHHHH-HCT--TT---TTS-
T ss_pred CCccCcCCCcCcCCCCC----cHHHHHHHcCcHHHHHHHH-HCcCCCCCCcCCCC
Confidence 34444567777788888 9999999999999999999 77777777666553
|
|
| >KOG0505|consensus | Back alignment and domain information |
|---|
Probab=94.53 E-value=0.072 Score=64.76 Aligned_cols=186 Identities=17% Similarity=0.148 Sum_probs=120.9
Q ss_pred ccCCChhhHHHHHHHHhHhccCCChhhHHHhhhhhcccccCCChhhhhhhhhhhhhhccCCCHHHHHHHhhhhcccccCC
Q psy9003 444 GLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFG 523 (1276)
Q Consensus 444 ~~~~~~e~l~~l~~~~~~~~~~~~~~~~~~~v~~~~~a~~~~~~e~~~~lv~~~~~~~~~~~~~~~~~~~t~~~~a~~~g 523 (1276)
+.+++-+....|+.-...++.-|-|. .|..|-++.-...|-++|||+..+-+|..++ -.||+.|.|.--|
T Consensus 48 ~~~~d~~ev~~ll~~ga~~~~~n~Dg-----lTalhq~~id~~~e~v~~l~e~ga~Vn~~d~-----e~wtPlhaaascg 117 (527)
T KOG0505|consen 48 CSRGDLEEVRKLLNRGASPNLCNVDG-----LTALHQACIDDNLEMVKFLVENGANVNAQDN-----EGWTPLHAAASCG 117 (527)
T ss_pred cccccHHHHHHHhccCCCccccCCcc-----chhHHHHHhcccHHHHHHHHHhcCCcccccc-----ccCCcchhhcccc
Confidence 33444444444444444445445555 7889999999999999999999999998887 7899999999999
Q ss_pred CHHHHHHHHhhhhhcC-CCCCcc----------hhhhhhhhhhccccCCCHHHHH------HHHHhhhhcc-CCC-Chhh
Q psy9003 524 TPEQLKYLVDECHKAG-LFGTPE----------QLKYLVDECHKAGLFGTPEQLK------YLVDECHKAG-LFG-TPEQ 584 (1276)
Q Consensus 524 ~~e~~~~lv~~~~~~~-~~~t~~----------~l~~~~~~~~~~~~~~~~e~~~------~l~~~~~~~~-~~~-~~~~ 584 (1276)
.+.+++||+.+++... ||...+ .+.+.-+.++..+.. ||+.. .|=|+-+-+| -+. ....
T Consensus 118 ~~~i~~~li~~gA~~~avNsdg~~P~dl~e~ea~~~~l~~~~~r~gi~--iea~R~~~e~~ml~D~~q~l~~G~~~d~~~ 195 (527)
T KOG0505|consen 118 YLNIVEYLIQHGANLLAVNSDGNMPYDLAEDEATLDVLETEMARQGID--IEAARKAEEQTMLDDARQWLNAGAELDARH 195 (527)
T ss_pred cHHHHHHHHHhhhhhhhccCCCCCccccccCcchhHHHHHHHHHhccc--HHHHhhhhHHHHHHHHHHHHhccccccccc
Confidence 9999999999999988 444433 344444444444444 55543 3444444444 111 1111
Q ss_pred hhhhhhhhcccccCCCHHHHHHHHhhhhhccCCCChhhhhhhHHHhhhccCCCCHHHHHHHHH
Q psy9003 585 LKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVD 647 (1276)
Q Consensus 585 ~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 647 (1276)
.. -=|++|=|...|-.|.+++|...+..-+++=++- -+=.|-|.--|..+-.+.||.
T Consensus 196 ~r-G~T~lHvAaa~Gy~e~~~lLl~ag~~~~~~D~dg-----WtPlHAAA~Wg~~~~~elL~~ 252 (527)
T KOG0505|consen 196 AR-GATALHVAAANGYTEVAALLLQAGYSVNIKDYDG-----WTPLHAAAHWGQEDACELLVE 252 (527)
T ss_pred cc-cchHHHHHHhhhHHHHHHHHHHhccCcccccccC-----CCcccHHHHhhhHhHHHHHHH
Confidence 11 4567777888888888888888877776554432 333344444455555555655
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=94.41 E-value=5.2 Score=51.26 Aligned_cols=215 Identities=16% Similarity=0.117 Sum_probs=142.5
Q ss_pred CCHHHHHHHHhhhhhcCCCCCcchhhhhhhhhhccccCCCHHHHHHHHHhhhhccCCCChhhhhhhhhhhcccccCCCHH
Q psy9003 523 GTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPE 602 (1276)
Q Consensus 523 g~~e~~~~lv~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 602 (1276)
|.++..+-+-+.+.+.++........-.|+.. +..|.++.+..+.+.+.+.|+..--.++..-| ..|..+
T Consensus 238 ~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y---~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~-------~~g~~~ 307 (697)
T PLN03081 238 GSARAGQQLHCCVLKTGVVGDTFVSCALIDMY---SKCGDIEDARCVFDGMPEKTTVAWNSMLAGYA-------LHGYSE 307 (697)
T ss_pred CcHHHHHHHHHHHHHhCCCccceeHHHHHHHH---HHCCCHHHHHHHHHhCCCCChhHHHHHHHHHH-------hCCCHH
Confidence 45555555555555555332211111122222 24578888888888887766544444444455 568889
Q ss_pred HHHHHHhhhhhccCCCChhhhhhhHHHhhhccCCCCHHHHHHHHHHHHhhcCCCChHHHhhhhhhhhhcccCCChhHHHH
Q psy9003 603 QLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKY 682 (1276)
Q Consensus 603 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 682 (1276)
.+--+...|.+.|.+.+..---.++.+|.+. |.+++++-+...+.+.|--.+......+++...+. |.++.+.-
T Consensus 308 eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~---g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~---G~~~~A~~ 381 (697)
T PLN03081 308 EALCLYYEMRDSGVSIDQFTFSIMIRIFSRL---ALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKW---GRMEDARN 381 (697)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc---cchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHC---CCHHHHHH
Confidence 9999999999998887776545667888775 56788888888888887766666777888888875 55788888
Q ss_pred HHHHHHhhccCCChhHHHhhHHHHhhcccCCCHHHHHHHHHHHHhccCCCCchhhhhhhhhhhccCcccChhhhhhhHhh
Q psy9003 683 LVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDE 762 (1276)
Q Consensus 683 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~F~~~ 762 (1276)
+.+.|.+.+ +-.-..++..+ +.+|..+.+.-+.++|.+.|..-+....--+..+|...|++. +.++.|..-
T Consensus 382 vf~~m~~~d----~~t~n~lI~~y---~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~--~a~~~f~~m 452 (697)
T PLN03081 382 VFDRMPRKN----LISWNALIAGY---GNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSE--QGWEIFQSM 452 (697)
T ss_pred HHHhCCCCC----eeeHHHHHHHH---HHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHH--HHHHHHHHH
Confidence 888886531 11222333433 467889999999999999987655555555688888888753 345555543
|
|
| >PRK10933 trehalose-6-phosphate hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.07 E-value=0.048 Score=68.00 Aligned_cols=20 Identities=25% Similarity=0.516 Sum_probs=9.9
Q ss_pred CCCHHHHHHHHHHHHHcCCC
Q psy9003 161 FGTPEQLKYLVDECHKAGLF 180 (1276)
Q Consensus 161 ygtp~~l~~~vd~~h~~~i~ 180 (1276)
|||.+||+.||++||++||+
T Consensus 77 ~Gt~~d~~~lv~~~h~~gi~ 96 (551)
T PRK10933 77 YGTLDDFDELVAQAKSRGIR 96 (551)
T ss_pred cCCHHHHHHHHHHHHHCCCE
Confidence 44444444444444444444
|
|
| >PLN02361 alpha-amylase | Back alignment and domain information |
|---|
Probab=94.01 E-value=0.059 Score=64.76 Aligned_cols=36 Identities=19% Similarity=0.246 Sum_probs=33.1
Q ss_pred hHHHHHHHHHHHHhcCc----------------------------CCCHHHHHHHHHHHHHcCCC
Q psy9003 144 TPEQLKYLVDECHKAGL----------------------------FGTPEQLKYLVDECHKAGLF 180 (1276)
Q Consensus 144 y~e~a~~li~y~~~~~y----------------------------ygtp~~l~~~vd~~h~~~i~ 180 (1276)
|+.|.++ +||++++|+ |||.+||+.||++||++||+
T Consensus 28 w~~i~~k-l~~l~~lG~t~iwl~P~~~~~~~~GY~~~d~y~~~~~~Gt~~el~~li~~~h~~gi~ 91 (401)
T PLN02361 28 WRNLEGK-VPDLAKSGFTSAWLPPPSQSLAPEGYLPQNLYSLNSAYGSEHLLKSLLRKMKQYNVR 91 (401)
T ss_pred HHHHHHH-HHHHHHcCCCEEEeCCCCcCCCCCCCCcccccccCcccCCHHHHHHHHHHHHHcCCE
Confidence 6888888 589999999 99999999999999999998
|
|
| >KOG4214|consensus | Back alignment and domain information |
|---|
Probab=93.93 E-value=0.037 Score=53.88 Aligned_cols=67 Identities=15% Similarity=0.122 Sum_probs=36.4
Q ss_pred hhhhcccccCCCHHHHHHHHhhhhhcCCCCCcchhhhhhhhhhccccCCCHHHHHHHHHhhhhccCCCChhh
Q psy9003 513 VDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQ 584 (1276)
Q Consensus 513 ~t~~~~a~~~g~~e~~~~lv~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~ 584 (1276)
-++.|+|...|-+++|.+|+-|+++|+--+- |.||-.--|.-+|-..-+|+|...++++-++..|-+
T Consensus 35 R~plhyAAD~GQl~ilefli~iGA~i~~kDK-----ygITPLLsAvwEGH~~cVklLL~~GAdrt~~~PdG~ 101 (117)
T KOG4214|consen 35 RTPLHYAADYGQLSILEFLISIGANIQDKDK-----YGITPLLSAVWEGHRDCVKLLLQNGADRTIHAPDGT 101 (117)
T ss_pred cccchHhhhcchHHHHHHHHHhccccCCccc-----cCCcHHHHHHHHhhHHHHHHHHHcCcccceeCCCch
Confidence 3455555555555555555555555554443 555555555555555555555555555554444433
|
|
| >KOG0512|consensus | Back alignment and domain information |
|---|
Probab=93.70 E-value=0.073 Score=56.95 Aligned_cols=147 Identities=16% Similarity=0.001 Sum_probs=93.0
Q ss_pred CHHHHHHHhhhhhccC-------CCCcccchhhhh-------ccccccccCCChhhhHHhhhhhccccCCCChhhHHHHH
Q psy9003 315 TPEQLKYLVDECHKAG-------LFGTPEQLKYLV-------DECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLV 380 (1276)
Q Consensus 315 si~~l~~Lv~~~~~~~-------~~~~~~~~~~~~-------~~~~~a~~~g~ie~~~yLi~~~h~~~~~~~~e~~~~~~ 380 (1276)
+.+|+-.|-.+.|.+| +-++|++.|.-. .-.-+|...+.+.-|+-|..+-. .-+|..++- =-
T Consensus 23 ~k~q~e~lr~h~~~~pgmfvS~W~ddsdeleE~dk~me~dp~rl~lwaae~nrl~eV~~lL~e~a-n~vNtrD~D---~Y 98 (228)
T KOG0512|consen 23 HKNQLEELRTHGHLIPGMFVSLWVDDSEELEEQDKNMEKDPIRLLLWAAEKNRLTEVQRLLSEKA-NHVNTRDED---EY 98 (228)
T ss_pred HHHHHHHHHhcCcCCCcceeeeecCCcHHHHhhccCcccCHHHHHHHHHhhccHHHHHHHHHhcc-ccccccccc---cc
Confidence 3567777777777777 344555554441 22236677788888887766543 114433320 12
Q ss_pred hhhcccccCCChhHHHHHhhhcccccCCCChhhhhcccccchhccccCCHhHHHhhcccccccccCCChhhHHHHHHHHh
Q psy9003 381 DECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECH 460 (1276)
Q Consensus 381 ~~~~~a~~~~~id~vkyLi~~~h~~~~~~~~~~~~~~vt~lh~a~~~~~~~~~~yli~~~~~~~~~~~~e~l~~l~~~~~ 460 (1276)
|-.|.|..+||.|||+.|+- .|-++-+.|.+|. ||||.|+.|+.-+|+-.|+.-+.-. .+-|...++-|.-.+.
T Consensus 99 TpLHRAaYn~h~div~~ll~-~gAn~~a~T~~GW----TPLhSAckWnN~~va~~LLqhgaDV-nA~t~g~ltpLhlaa~ 172 (228)
T KOG0512|consen 99 TPLHRAAYNGHLDIVHELLL-SGANKEAKTNEGW----TPLHSACKWNNFEVAGRLLQHGADV-NAQTKGLLTPLHLAAG 172 (228)
T ss_pred cHHHHHHhcCchHHHHHHHH-ccCCcccccccCc----cchhhhhcccchhHHHHHHhccCcc-cccccccchhhHHhhc
Confidence 55677888999999999983 4557788899999 9999999999999998887654322 2233333333332222
Q ss_pred HhccCCChhhHHHh
Q psy9003 461 KAGLFGTPEQLKYL 474 (1276)
Q Consensus 461 ~~~~~~~~~~~~~~ 474 (1276)
.+|+-+-+++|
T Consensus 173 ---~rn~r~t~~~L 183 (228)
T KOG0512|consen 173 ---NRNSRDTLELL 183 (228)
T ss_pred ---ccchHHHHHHH
Confidence 33444555555
|
|
| >KOG0195|consensus | Back alignment and domain information |
|---|
Probab=93.48 E-value=0.069 Score=60.59 Aligned_cols=90 Identities=12% Similarity=0.002 Sum_probs=67.3
Q ss_pred hhhccccccccCCChhhhHHhhhhhcccc-CCCChhhHHHHHhhhcccccCCChhHHHHHhhhcccccCCCChhhhhccc
Q psy9003 340 YLVDECHKAGLFGTPEQLKYLVDECHKAG-LFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLV 418 (1276)
Q Consensus 340 ~~~~~~~~a~~~g~ie~~~yLi~~~h~~~-~~~~~e~~~~~~~~~~~a~~~~~id~vkyLi~~~h~~~~~~~~~~~~~~v 418 (1276)
++..+.|+|+.-||.-+|..|+--...+| +|.-+|+-.++.+ .+||-|||.-|+-+--. --+++.-|.
T Consensus 33 hgfsplhwaakegh~aivemll~rgarvn~tnmgddtplhlaa------ahghrdivqkll~~kad-vnavnehgn---- 101 (448)
T KOG0195|consen 33 HGFSPLHWAAKEGHVAIVEMLLSRGARVNSTNMGDDTPLHLAA------AHGHRDIVQKLLSRKAD-VNAVNEHGN---- 101 (448)
T ss_pred cCcchhhhhhhcccHHHHHHHHhcccccccccCCCCcchhhhh------hcccHHHHHHHHHHhcc-cchhhccCC----
Confidence 45677889999999999999988888888 4666664444443 47899999888866543 234444567
Q ss_pred ccchhccccCCHhHHHhhcccc
Q psy9003 419 DECHKAGLFGTPEQLKYLVDEC 440 (1276)
Q Consensus 419 t~lh~a~~~~~~~~~~yli~~~ 440 (1276)
||||+|+.||..-+.+-||+.+
T Consensus 102 tplhyacfwgydqiaedli~~g 123 (448)
T KOG0195|consen 102 TPLHYACFWGYDQIAEDLISCG 123 (448)
T ss_pred CchhhhhhhcHHHHHHHHHhcc
Confidence 9999999999988877777644
|
|
| >PLN02784 alpha-amylase | Back alignment and domain information |
|---|
Probab=93.39 E-value=0.078 Score=68.30 Aligned_cols=36 Identities=31% Similarity=0.397 Sum_probs=33.7
Q ss_pred hHHHHHHHHHHHHhcCc----------------------------CCCHHHHHHHHHHHHHcCCC
Q psy9003 144 TPEQLKYLVDECHKAGL----------------------------FGTPEQLKYLVDECHKAGLF 180 (1276)
Q Consensus 144 y~e~a~~li~y~~~~~y----------------------------ygtp~~l~~~vd~~h~~~i~ 180 (1276)
|+.|.+. +||++++|+ |||.+||+.||++||++||+
T Consensus 520 ~~~I~ek-ldyL~~LG~taIWLpP~~~s~s~~GY~p~D~y~lds~yGT~~ELk~LI~a~H~~GIk 583 (894)
T PLN02784 520 YMELGEK-AAELSSLGFTVVWLPPPTESVSPEGYMPKDLYNLNSRYGTIDELKDLVKSFHEVGIK 583 (894)
T ss_pred HHHHHHH-HHHHHHhCCCEEEeCCCCCCCCCCCcCcccccccCcCcCCHHHHHHHHHHHHHCCCE
Confidence 7888776 799999998 99999999999999999999
|
|
| >TIGR02456 treS_nterm trehalose synthase | Back alignment and domain information |
|---|
Probab=93.38 E-value=0.073 Score=66.17 Aligned_cols=46 Identities=15% Similarity=0.233 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHhcccCCCCCeeEeecCCCeEEEEEc----CcEEEEEeCC
Q psy9003 1216 LFDAAMNTTEERFKWLSADPGYVSTKHEGDKVIIFER----AGLLFAFNFN 1262 (1276)
Q Consensus 1216 ~F~~~Ln~l~~~~p~L~~~~~~~l~nHD~~RVlsf~R----~~ll~v~N~~ 1262 (1276)
.|.+.|+++|++.|+|+.+. +.....+.++|++|.| +.+++++|++
T Consensus 440 ~~yr~Li~lRk~~~aL~~G~-~~~l~~~~~~v~~f~R~~~~~~vlVv~N~s 489 (539)
T TIGR02456 440 HWTRRVLHVRKAHPAFGRGS-LTFLPTGNRRVLAFLREYEGERVLCVFNFS 489 (539)
T ss_pred HHHHHHHHHHhcCcccccCc-eEEEecCCCCEEEEEEEcCCcEEEEEEeCC
Confidence 34555555555555544322 2222222334555555 1355555554
|
Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530). |
| >PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A | Back alignment and domain information |
|---|
Probab=93.16 E-value=0.066 Score=45.79 Aligned_cols=51 Identities=22% Similarity=0.147 Sum_probs=26.3
Q ss_pred hhhcccccCCCHHHHHHHHhhhhhcCCCCCcchhhhhhhhhhccccCCCHHHHHHH
Q psy9003 514 DECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYL 569 (1276)
Q Consensus 514 t~~~~a~~~g~~e~~~~lv~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~e~~~~l 569 (1276)
|..+.|+..|++|++++|++...++|..+. ..-|..+.|+..|+++-+++|
T Consensus 3 t~lh~A~~~g~~~~~~~Ll~~~~din~~d~-----~g~t~lh~A~~~g~~~~~~~L 53 (54)
T PF13637_consen 3 TPLHWAARSGNLEIVKLLLEHGADINAQDE-----DGRTPLHYAAKNGNIDIVKFL 53 (54)
T ss_dssp BHHHHHHHTT-HHHHHHHHHTTSGTT-B-T-----TS--HHHHHHHTT-HHHHHHH
T ss_pred hHHHHHHHhCCHHHHHHHHHCCCCCCCCCC-----CCCCHHHHHHHccCHHHHHHH
Confidence 455566666666666666666655553333 233445555566666666665
|
... |
| >PRK09441 cytoplasmic alpha-amylase; Reviewed | Back alignment and domain information |
|---|
Probab=93.09 E-value=0.094 Score=64.21 Aligned_cols=16 Identities=19% Similarity=0.106 Sum_probs=14.2
Q ss_pred hHHHHHHHHHHHHhcCc
Q psy9003 144 TPEQLKYLVDECHKAGL 160 (1276)
Q Consensus 144 y~e~a~~li~y~~~~~y 160 (1276)
|+-|.++| ||++++|+
T Consensus 21 ~~~I~~kl-dyl~~LGv 36 (479)
T PRK09441 21 WNRLAERA-PELAEAGI 36 (479)
T ss_pred HHHHHHHH-HHHHHcCC
Confidence 67899996 99999998
|
|
| >PRK10785 maltodextrin glucosidase; Provisional | Back alignment and domain information |
|---|
Probab=93.04 E-value=0.098 Score=65.91 Aligned_cols=37 Identities=19% Similarity=0.177 Sum_probs=34.5
Q ss_pred ChHHHHHHHHHHHHhcCc----------------------------CCCHHHHHHHHHHHHHcCCC
Q psy9003 143 GTPEQLKYLVDECHKAGL----------------------------FGTPEQLKYLVDECHKAGLF 180 (1276)
Q Consensus 143 ~y~e~a~~li~y~~~~~y----------------------------ygtp~~l~~~vd~~h~~~i~ 180 (1276)
+.+-|.++| ||+|++|. |||.+||+.||++||+.||+
T Consensus 177 Dl~GI~~kL-dYL~~LGv~~I~L~Pif~s~s~hgYd~~Dy~~iDp~~Gt~~df~~Lv~~aH~rGik 241 (598)
T PRK10785 177 DLDGISEKL-PYLKKLGVTALYLNPIFTAPSVHKYDTEDYRHVDPQLGGDAALLRLRHATQQRGMR 241 (598)
T ss_pred CHHHHHHHH-HHHHHcCCCEEEeCCcccCCCCCCcCcccccccCcccCCHHHHHHHHHHHHHCCCE
Confidence 568888886 99999998 99999999999999999999
|
|
| >KOG4214|consensus | Back alignment and domain information |
|---|
Probab=93.00 E-value=0.076 Score=51.82 Aligned_cols=93 Identities=16% Similarity=0.083 Sum_probs=63.1
Q ss_pred ccCCCHHHHHHHHhhhhhcCCCCCcchhhhhhhhhhccccCCCHHHHHHHHHhhhhccCCCChhhhhhhhhhhcccccCC
Q psy9003 520 GLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFG 599 (1276)
Q Consensus 520 ~~~g~~e~~~~lv~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 599 (1276)
+.+|.++-||--|.++ .|||++.+ .=+..|.|--.|-++-|.+|+-++++|+... ||-+|..--|.-.|
T Consensus 10 vkNG~~DeVk~~v~~g--~nVn~~~g----gR~plhyAAD~GQl~ilefli~iGA~i~~kD-----KygITPLLsAvwEG 78 (117)
T KOG4214|consen 10 VKNGEIDEVKQSVNEG--LNVNEIYG----GRTPLHYAADYGQLSILEFLISIGANIQDKD-----KYGITPLLSAVWEG 78 (117)
T ss_pred hccCcHHHHHHHHHcc--ccHHHHhC----CcccchHhhhcchHHHHHHHHHhccccCCcc-----ccCCcHHHHHHHHh
Confidence 4477888888777776 66776632 1123355557788888888888888887433 34455555556677
Q ss_pred CHHHHHHHHhhhhhccCCCChhhh
Q psy9003 600 TPEQLKYLVDECHKAGLFGTPEQL 623 (1276)
Q Consensus 600 ~~e~~~~l~~~~~~~~~~~~~~~~ 623 (1276)
+..-+|+|+..++++-++..+-++
T Consensus 79 H~~cVklLL~~GAdrt~~~PdG~~ 102 (117)
T KOG4214|consen 79 HRDCVKLLLQNGADRTIHAPDGTA 102 (117)
T ss_pred hHHHHHHHHHcCcccceeCCCchh
Confidence 777788888888888777666554
|
|
| >TIGR01370 cysRS possible cysteinyl-tRNA synthetase, Methanococcus type | Back alignment and domain information |
|---|
Probab=92.99 E-value=0.51 Score=55.26 Aligned_cols=118 Identities=14% Similarity=0.255 Sum_probs=74.4
Q ss_pred HHHHHHHHHcCCEEEEEEeccccCCcccCCCcCCCCCCCccccc-----CC---CCCCCCC-CCcCCCCCcHHHHHHHHH
Q psy9003 1040 KYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHD-----GP---RGTHPLW-DSRLFNYSEIEVLRFLLS 1110 (1276)
Q Consensus 1040 K~LV~alHk~GI~VILDvV~NHt~~~~~~~~~~f~g~~~~Yy~~-----~~---~g~~~~W-~g~~LN~~np~Vr~~Iid 1110 (1276)
++=|+++|+.|.+||-=+-.. +...+ ..||.. .+ -+..++| +...+|+.+|+.+++|.+
T Consensus 84 ~~~i~~Lk~~g~~viaYlSvG---e~E~~---------R~y~~~~~~~~~~~~l~~~n~~W~g~~~vd~~~~~W~~il~~ 151 (315)
T TIGR01370 84 PEEIVRAAAAGRWPIAYLSIG---AAEDY---------RFYWQKGWKVNAPAWLGNEDPDWPGNYDVKYWDPEWKAIAFS 151 (315)
T ss_pred HHHHHHHHhCCcEEEEEEEch---hcccc---------chhhhhhhhcCCHHHhCCCCCCCCCceeEecccHHHHHHHHH
Confidence 345667888998886433222 21111 122221 11 2346788 456789999999999999
Q ss_pred HHHHHHHhCCCcEEccCCccccccccCCCCCCCCCCCccccCCCCCchHHHHHHHHHHHHHhhCCCeEEE
Q psy9003 1111 NLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITI 1180 (1276)
Q Consensus 1111 sl~~Wv~eygVDGFRfD~a~~L~~~d~g~g~~~~~~~~~~~~~~~d~~a~~Fl~el~~~Vr~~~PdvilI 1180 (1276)
-+...++ -|+|||=+|.+....+.. ..+.++. ....+-+.|++.|.+.+|+.+|++++|
T Consensus 152 rl~~l~~-kGfDGvfLD~lDsy~~~~-~~~~~~~---------~~~~~m~~~i~~Ia~~ar~~~P~~~II 210 (315)
T TIGR01370 152 YLDRVIA-QGFDGVYLDLIDAFEYWA-ENGDNRP---------GAAAEMIAFVCEIAAYARAQNPQFVII 210 (315)
T ss_pred HHHHHHH-cCCCeEeeccchhhhhhc-ccCCcch---------hhHHHHHHHHHHHHHHHHHHCCCEEEE
Confidence 8877666 499999999876542110 0000000 001234679999988999999999998
|
Assignment of this protein family as cysteinyl-tRNA synthetase is controversial, supported by PubMed:11333988 but challenged by PubMed:14679218. Members of this family from Deinococcus radiodurans (bacterial) and Methanococcus jannaschii (archaeal), species lacking a conventional cysteinyl-tRNA synthetase (Cys--tRNA ligase), have been indicated to be a novel form of that enzyme, perhaps distantly related to class I tRNA ligases. The member from Thermotoga maritima is presumed to be a second isozyme of cysteinyl-tRNA synthetase. A number of homologous but more distantly related proteins are annotated as alpha-1,4 polygalactosaminidases. |
| >PLN00196 alpha-amylase; Provisional | Back alignment and domain information |
|---|
Probab=92.98 E-value=0.11 Score=62.93 Aligned_cols=20 Identities=35% Similarity=0.650 Sum_probs=10.0
Q ss_pred CCCHHHHHHHHHHHHHcCCC
Q psy9003 161 FGTPEQLKYLVDECHKAGLF 180 (1276)
Q Consensus 161 ygtp~~l~~~vd~~h~~~i~ 180 (1276)
|||.+||+.||++||++||+
T Consensus 88 fGt~~elk~Lv~~aH~~GIk 107 (428)
T PLN00196 88 YGNEAQLKSLIEAFHGKGVQ 107 (428)
T ss_pred CCCHHHHHHHHHHHHHCCCE
Confidence 44445555555555555544
|
|
| >PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3 | Back alignment and domain information |
|---|
Probab=92.70 E-value=2.8 Score=46.52 Aligned_cols=106 Identities=17% Similarity=0.186 Sum_probs=61.5
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEEeccccCCcccCCCcCCCCCCCcccccCCCCCCCCCC-CcCCCCCcHHHHHHHHHHHH
Q psy9003 1035 TPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWD-SRLFNYSEIEVLRFLLSNLR 1113 (1276)
Q Consensus 1035 t~eEfK~LV~alHk~GI~VILDvV~NHt~~~~~~~~~~f~g~~~~Yy~~~~~g~~~~W~-g~~LN~~np~Vr~~Iidsl~ 1113 (1276)
..+.|+++|++|+++||+||+|+--. . .|. +.......+...+++.+..+
T Consensus 60 ~~~~ld~~v~~a~~~gi~vild~h~~---~--------------------------~w~~~~~~~~~~~~~~~~~~~~~~ 110 (281)
T PF00150_consen 60 YLARLDRIVDAAQAYGIYVILDLHNA---P--------------------------GWANGGDGYGNNDTAQAWFKSFWR 110 (281)
T ss_dssp HHHHHHHHHHHHHHTT-EEEEEEEES---T--------------------------TCSSSTSTTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCeEEEEeccC---c--------------------------cccccccccccchhhHHHHHhhhh
Confidence 36889999999999999999998544 1 110 11122233445666677777
Q ss_pred HHHHhC----CCcEEccCCccccccccCCCCC--CCCCCCccccCCCCCchHHHHHHHHHHHHHhhCCCeEEEEEc
Q psy9003 1114 WYLDEY----QFDGFRFDGVTSMLYHNHGCGE--GFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAED 1183 (1276)
Q Consensus 1114 ~Wv~ey----gVDGFRfD~a~~L~~~d~g~g~--~~~~~~~~~~~~~~d~~a~~Fl~el~~~Vr~~~PdvilIAE~ 1183 (1276)
.++++| .|-|| |.+.... ..+. .|. ......-..+.+.+.+.||+..|+..++.+.
T Consensus 111 ~la~~y~~~~~v~~~--el~NEP~----~~~~~~~w~--------~~~~~~~~~~~~~~~~~Ir~~~~~~~i~~~~ 172 (281)
T PF00150_consen 111 ALAKRYKDNPPVVGW--ELWNEPN----GGNDDANWN--------AQNPADWQDWYQRAIDAIRAADPNHLIIVGG 172 (281)
T ss_dssp HHHHHHTTTTTTEEE--ESSSSGC----STTSTTTTS--------HHHTHHHHHHHHHHHHHHHHTTSSSEEEEEE
T ss_pred hhccccCCCCcEEEE--EecCCcc----ccCCccccc--------cccchhhhhHHHHHHHHHHhcCCcceeecCC
Confidence 777776 34343 3222110 0000 010 0001122457888999999999998777775
|
2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A .... |
| >PRK10658 putative alpha-glucosidase; Provisional | Back alignment and domain information |
|---|
Probab=92.39 E-value=0.16 Score=64.76 Aligned_cols=89 Identities=15% Similarity=0.306 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHcCCEEEEEEeccccCCcccCCCcCC-CCCCCcccccCCCCCC---CCCC--CcCCCCCcHHHHHHHHHH
Q psy9003 1038 QLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEF-DGTQACFFHDGPRGTH---PLWD--SRLFNYSEIEVLRFLLSN 1111 (1276)
Q Consensus 1038 EfK~LV~alHk~GI~VILDvV~NHt~~~~~~~~~~f-~g~~~~Yy~~~~~g~~---~~W~--g~~LN~~np~Vr~~Iids 1111 (1276)
+.++||+++|++|++|++-+.+. ...+.+ .| .+....||..+++|.. ..|. ..-+|+.||++|++..+.
T Consensus 326 dp~~mi~~L~~~G~k~~~~i~P~-i~~~s~----~f~e~~~~gy~vk~~~G~~~~~~~W~g~~~~~Dftnp~ar~W~~~~ 400 (665)
T PRK10658 326 DPEGMLKRLKAKGLKICVWINPY-IAQKSP----LFKEGKEKGYLLKRPDGSVWQWDKWQPGMAIVDFTNPDACKWYADK 400 (665)
T ss_pred CHHHHHHHHHHCCCEEEEeccCC-cCCCch----HHHHHHHCCeEEECCCCCEeeeeecCCCceeecCCCHHHHHHHHHH
Confidence 45789999999999999876542 332211 12 1233456665555543 2344 356899999999999999
Q ss_pred HHHHHHhCCCcEEccCCcccc
Q psy9003 1112 LRWYLDEYQFDGFRFDGVTSM 1132 (1276)
Q Consensus 1112 l~~Wv~eygVDGFRfD~a~~L 1132 (1276)
++.+++ +|||||-.|....+
T Consensus 401 ~~~l~d-~Gvdgfw~D~gE~~ 420 (665)
T PRK10658 401 LKGLLD-MGVDCFKTDFGERI 420 (665)
T ss_pred HHHHHh-cCCcEEEecCCcee
Confidence 999777 79999999976655
|
|
| >PF13606 Ank_3: Ankyrin repeat | Back alignment and domain information |
|---|
Probab=92.39 E-value=0.047 Score=42.15 Aligned_cols=22 Identities=32% Similarity=0.388 Sum_probs=20.5
Q ss_pred ccchhccccCCHhHHHhhcccc
Q psy9003 419 DECHKAGLFGTPEQLKYLVDEC 440 (1276)
Q Consensus 419 t~lh~a~~~~~~~~~~yli~~~ 440 (1276)
||||.|+..|++|+|+|||..+
T Consensus 4 T~Lh~A~~~g~~e~v~~Ll~~g 25 (30)
T PF13606_consen 4 TPLHLAASNGNIEIVKYLLEHG 25 (30)
T ss_pred CHHHHHHHhCCHHHHHHHHHcC
Confidence 9999999999999999999753
|
|
| >cd06604 GH31_glucosidase_II_MalA Alpha-glucosidase II (alpha-D-glucoside glucohydrolase) is a glycosyl hydrolase family 31 (GH31) enzyme, found in bacteria and plants, which has exo-alpha-1,4-glucosidase and oligo-1,6-glucosidase activities | Back alignment and domain information |
|---|
Probab=92.30 E-value=0.19 Score=59.02 Aligned_cols=88 Identities=19% Similarity=0.323 Sum_probs=58.1
Q ss_pred HHHHHHHHHHcCCEEEEEEeccccCCcccCCCcCC-CCCCCcccccCCCCC---CCCCCC--cCCCCCcHHHHHHHHHHH
Q psy9003 1039 LKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEF-DGTQACFFHDGPRGT---HPLWDS--RLFNYSEIEVLRFLLSNL 1112 (1276)
Q Consensus 1039 fK~LV~alHk~GI~VILDvV~NHt~~~~~~~~~~f-~g~~~~Yy~~~~~g~---~~~W~g--~~LN~~np~Vr~~Iidsl 1112 (1276)
.++|++++|++|++|++=+.+ +...+.. ...| .+....||-.+++|. ...|.+ .-+|+.||+.+++..+.+
T Consensus 66 p~~m~~~l~~~g~~~~~~~~P-~v~~~~~--~~~~~e~~~~g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~ 142 (339)
T cd06604 66 PKELIKELHEQGFKVVTIIDP-GVKVDPG--YDVYEEGLENDYFVKDPDGELYIGRVWPGLSAFPDFTNPKVREWWGSLY 142 (339)
T ss_pred HHHHHHHHHHCCCEEEEEEeC-ceeCCCC--ChHHHHHHHCCeEEECCCCCEEEEEecCCCccccCCCChHHHHHHHHHH
Confidence 479999999999999977644 2221100 0011 122234554444442 234443 447999999999999999
Q ss_pred HHHHHhCCCcEEccCCcc
Q psy9003 1113 RWYLDEYQFDGFRFDGVT 1130 (1276)
Q Consensus 1113 ~~Wv~eygVDGFRfD~a~ 1130 (1276)
+..++ .|||||-+|...
T Consensus 143 ~~~~~-~Gvdg~w~D~~E 159 (339)
T cd06604 143 KKFVD-LGVDGIWNDMNE 159 (339)
T ss_pred HHHhh-CCCceEeecCCC
Confidence 98775 899999999754
|
Alpha-glucosidase II has been characterized in Bacillus thermoamyloliquefaciens where it forms a homohexamer. This family also includes the MalA alpha-glucosidase from Sulfolobus sulfataricus and the AglA alpha-glucosidase from Picrophilus torridus. MalA is part of the carbohydrate-metabolizing machinery that allows this organism to utilize carbohydrates, such as maltose, as the sole carbon and energy source. |
| >PRK10426 alpha-glucosidase; Provisional | Back alignment and domain information |
|---|
Probab=92.17 E-value=0.2 Score=63.65 Aligned_cols=90 Identities=9% Similarity=0.111 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHcCCEEEEEEeccccCCcccCCCcCC-CCCCCcccccCCCCCC---CCCC--CcCCCCCcHHHHHHHHHH
Q psy9003 1038 QLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEF-DGTQACFFHDGPRGTH---PLWD--SRLFNYSEIEVLRFLLSN 1111 (1276)
Q Consensus 1038 EfK~LV~alHk~GI~VILDvV~NHt~~~~~~~~~~f-~g~~~~Yy~~~~~g~~---~~W~--g~~LN~~np~Vr~~Iids 1111 (1276)
+.++||+++|++|++|++=+-+- ...+.+ .| .+....||..+++|.. ..|. +.-+|+.||++|++..+.
T Consensus 270 dp~~mi~~L~~~G~k~v~~i~P~-v~~~~~----~y~e~~~~gy~vk~~~g~~~~~~~~~~~~~~~Dftnp~ar~Ww~~~ 344 (635)
T PRK10426 270 QLDSRIKQLNEEGIQFLGYINPY-LASDGD----LCEEAAEKGYLAKDADGGDYLVEFGEFYAGVVDLTNPEAYEWFKEV 344 (635)
T ss_pred CHHHHHHHHHHCCCEEEEEEcCc-cCCCCH----HHHHHHHCCcEEECCCCCEEEeEecCCCceeecCCCHHHHHHHHHH
Confidence 46789999999999999886543 222211 11 1222345554444331 2232 456899999999999999
Q ss_pred HHHHHHhCCCcEEccCCcccc
Q psy9003 1112 LRWYLDEYQFDGFRFDGVTSM 1132 (1276)
Q Consensus 1112 l~~Wv~eygVDGFRfD~a~~L 1132 (1276)
++..+.++|||||-.|.-..+
T Consensus 345 ~~~~~~~~Gvdg~w~D~~E~~ 365 (635)
T PRK10426 345 IKKNMIGLGCSGWMADFGEYL 365 (635)
T ss_pred HHHHHhhcCCCEEeeeCCCCC
Confidence 987777799999999976544
|
|
| >PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional | Back alignment and domain information |
|---|
Probab=92.15 E-value=0.11 Score=66.08 Aligned_cols=89 Identities=15% Similarity=0.003 Sum_probs=71.1
Q ss_pred hhhhhcccccCCChhhhhhhhhhhhhhccCCCHHHHHHHhhhhcccccCCCHHHHHHHHhhhhhcCCCCCcchhhhhhhh
Q psy9003 474 LVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDE 553 (1276)
Q Consensus 474 ~v~~~~~a~~~~~~e~~~~lv~~~~~~~~~~~~~~~~~~~t~~~~a~~~g~~e~~~~lv~~~~~~~~~~t~~~l~~~~~~ 553 (1276)
+-...+.|..+|.++.+++|+....++|.... ...|.+|.|+..|+++++++|++.++++|..+. ..-|.
T Consensus 82 ~~~~L~~aa~~G~~~~vk~LL~~Gadin~~d~-----~G~TpLh~Aa~~g~~eiv~~LL~~Gadvn~~d~-----~G~Tp 151 (664)
T PTZ00322 82 LTVELCQLAASGDAVGARILLTGGADPNCRDY-----DGRTPLHIACANGHVQVVRVLLEFGADPTLLDK-----DGKTP 151 (664)
T ss_pred hHHHHHHHHHcCCHHHHHHHHHCCCCCCCcCC-----CCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCC-----CCCCH
Confidence 34456677788999999999988888776543 347889999999999999999999988886655 45566
Q ss_pred hhccccCCCHHHHHHHHHh
Q psy9003 554 CHKAGLFGTPEQLKYLVDE 572 (1276)
Q Consensus 554 ~~~~~~~~~~e~~~~l~~~ 572 (1276)
.+.|...|+.+.+++|.+.
T Consensus 152 Lh~A~~~g~~~iv~~Ll~~ 170 (664)
T PTZ00322 152 LELAEENGFREVVQLLSRH 170 (664)
T ss_pred HHHHHHCCcHHHHHHHHhC
Confidence 7777789999999999876
|
|
| >COG0666 Arp FOG: Ankyrin repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.06 E-value=0.25 Score=51.14 Aligned_cols=122 Identities=21% Similarity=0.134 Sum_probs=81.5
Q ss_pred HhhhhcccccCCCHHHHHHHHhhhhhcCCCCCcchhhhhhhhhhccccCCC-----HHHHHHHHHhhh--hcc-CCCChh
Q psy9003 512 LVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGT-----PEQLKYLVDECH--KAG-LFGTPE 583 (1276)
Q Consensus 512 ~~t~~~~a~~~g~~e~~~~lv~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~-----~e~~~~l~~~~~--~~~-~~~~~~ 583 (1276)
..+..+.++..+..+.+++|+....+++..+. ...|..+.|...|+ .+.+++|++.++ +++ .....
T Consensus 73 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-----~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~- 146 (235)
T COG0666 73 GRLPLHSAASKGDDKIVKLLLASGADVNAKDA-----DGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDED- 146 (235)
T ss_pred ccCHHHHHHHcCcHHHHHHHHHcCCCcccccC-----CCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCccccCCC-
Confidence 36667777777888888888888888875555 33444444556666 888888888888 444 21111
Q ss_pred hhhhhhhhhcccccCCCHHHHHHHHhhhhhccCCCChhhhhhhHHHhhhccCCCCHHHHHHHHHH
Q psy9003 584 QLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDE 648 (1276)
Q Consensus 584 ~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 648 (1276)
.-|.++-|..+|..+.+++|+..++..+..- .+--++...|...+.++.++.+.+.
T Consensus 147 ----g~tpl~~A~~~~~~~~~~~ll~~~~~~~~~~-----~~g~t~l~~a~~~~~~~~~~~l~~~ 202 (235)
T COG0666 147 ----GNTPLHWAALNGDADIVELLLEAGADPNSRN-----SYGVTALDPAAKNGRIELVKLLLDK 202 (235)
T ss_pred ----CCchhHHHHHcCchHHHHHHHhcCCCCcccc-----cCCCcchhhhcccchHHHHHHHHhc
Confidence 2466666668888888888888877776551 2235556666666777777777763
|
|
| >cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY | Back alignment and domain information |
|---|
Probab=92.01 E-value=0.28 Score=57.16 Aligned_cols=86 Identities=13% Similarity=0.158 Sum_probs=56.4
Q ss_pred HHHHHHHHHHcCCEEEEEEeccccCCcccCCCcCCC-CCCCcc-cccCCCCC---CCCCC--CcCCCCCcHHHHHHHHHH
Q psy9003 1039 LKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFD-GTQACF-FHDGPRGT---HPLWD--SRLFNYSEIEVLRFLLSN 1111 (1276)
Q Consensus 1039 fK~LV~alHk~GI~VILDvV~NHt~~~~~~~~~~f~-g~~~~Y-y~~~~~g~---~~~W~--g~~LN~~np~Vr~~Iids 1111 (1276)
.++||+++|++|++|++=+.+- ...+.+ .|. +....| +.....+. ...|. +.-+|+.||+++++..+.
T Consensus 72 p~~mi~~L~~~G~k~~~~v~P~-v~~~~~----~y~e~~~~g~l~~~~~~~~~~~~~~w~g~~~~~Dftnp~a~~w~~~~ 146 (317)
T cd06598 72 PAGMIADLAKKGVKTIVITEPF-VLKNSK----NWGEAVKAGALLKKDQGGVPTLFDFWFGNTGLIDWFDPAAQAWFHDN 146 (317)
T ss_pred HHHHHHHHHHcCCcEEEEEcCc-ccCCch----hHHHHHhCCCEEEECCCCCEeeeeccCCCccccCCCCHHHHHHHHHH
Confidence 4689999999999999987532 222211 111 111233 33332222 12333 456899999999999999
Q ss_pred HHHHHHhCCCcEEccCCcc
Q psy9003 1112 LRWYLDEYQFDGFRFDGVT 1130 (1276)
Q Consensus 1112 l~~Wv~eygVDGFRfD~a~ 1130 (1276)
++.. .+.|||||-+|.-.
T Consensus 147 ~~~~-~~~Gvdg~w~D~~E 164 (317)
T cd06598 147 YKKL-IDQGVTGWWGDLGE 164 (317)
T ss_pred HHHh-hhCCccEEEecCCC
Confidence 9887 55899999999743
|
CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. |
| >PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3 | Back alignment and domain information |
|---|
Probab=91.90 E-value=0.086 Score=63.53 Aligned_cols=91 Identities=23% Similarity=0.442 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHcCCEEEEEEeccccCCcccCCCcCCC-CCCCcccccCCCCC---CCCCC--CcCCCCCcHHHHHHHHHH
Q psy9003 1038 QLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFD-GTQACFFHDGPRGT---HPLWD--SRLFNYSEIEVLRFLLSN 1111 (1276)
Q Consensus 1038 EfK~LV~alHk~GI~VILDvV~NHt~~~~~~~~~~f~-g~~~~Yy~~~~~g~---~~~W~--g~~LN~~np~Vr~~Iids 1111 (1276)
++++|++.+|++|++|++-+.+. ...... ....|+ +....|+-.+++|. ...|. +..+|+.||+++++..+.
T Consensus 84 d~~~~~~~l~~~G~~~~~~~~P~-v~~~~~-~~~~~~~~~~~~~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~w~~~~ 161 (441)
T PF01055_consen 84 DPKQMIDELHDQGIKVVLWVHPF-VSNDSP-DYENYDEAKEKGYLVKNPDGSPYIGRVWPGKGGFIDFTNPEARDWWKEQ 161 (441)
T ss_dssp THHHHHHHHHHTT-EEEEEEESE-EETTTT-B-HHHHHHHHTT-BEBCTTSSB-EEEETTEEEEEB-TTSHHHHHHHHHH
T ss_pred chHHHHHhHhhCCcEEEEEeecc-cCCCCC-cchhhhhHhhcCceeecccCCcccccccCCcccccCCCChhHHHHHHHH
Confidence 67899999999999999988874 332211 000111 11123444344431 12254 467899999999999999
Q ss_pred HHHHHHhCCCcEEccCCcc
Q psy9003 1112 LRWYLDEYQFDGFRFDGVT 1130 (1276)
Q Consensus 1112 l~~Wv~eygVDGFRfD~a~ 1130 (1276)
++..++.+|||||-+|...
T Consensus 162 ~~~~~~~~Gvdg~w~D~~E 180 (441)
T PF01055_consen 162 LKELLDDYGVDGWWLDFGE 180 (441)
T ss_dssp HHHHHTTST-SEEEEESTT
T ss_pred HHHHHhccCCceEEeecCC
Confidence 9999998999999999854
|
2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 31 GH31 from CAZY comprises enzymes with several known activities; alpha-glucosidase (3.2.1.20 from EC), alpha-galactosidase (3.2.1.22 from EC); glucoamylase (3.2.1.3 from EC), sucrase-isomaltase (3.2.1.48 from EC); isomaltase (3.2.1.10 from EC); alpha-xylosidase (3.2.1 from EC); alpha-glucan lyase (4.2.2.13 from EC). Glycoside hydrolase family 31 groups a number of glycosyl hydrolases on the basis of sequence similarities [, , ] An aspartic acid has been implicated [] in the catalytic activity of sucrase, isomaltase, and lysosomal alpha-glucosidase.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3L4U_A 3L4X_A 3L4W_A 3L4V_A 3CTT_A 2QMJ_A 2QLY_A 3L4Z_A 3L4Y_A 3L4T_A .... |
| >PRK09505 malS alpha-amylase; Reviewed | Back alignment and domain information |
|---|
Probab=91.50 E-value=0.2 Score=64.10 Aligned_cols=17 Identities=18% Similarity=0.153 Sum_probs=14.6
Q ss_pred ChHHHHHHHHHHHHhcCc
Q psy9003 143 GTPEQLKYLVDECHKAGL 160 (1276)
Q Consensus 143 ~y~e~a~~li~y~~~~~y 160 (1276)
+++.|.+.| ||+++||+
T Consensus 228 dl~Gi~~kL-dyl~~LGv 244 (683)
T PRK09505 228 DLRGLTEKL-DYLQQLGV 244 (683)
T ss_pred CHHHHHHhh-HHHHHcCC
Confidence 589999886 99999987
|
|
| >PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional | Back alignment and domain information |
|---|
Probab=91.19 E-value=0.24 Score=63.15 Aligned_cols=90 Identities=14% Similarity=0.023 Sum_probs=70.4
Q ss_pred HHhhhhcccccCCCHHHHHHHHhhhhhcCCCCCcchhhhhhhhhhccccCCCHHHHHHHHHhhhhccCCCChhhhhhhhh
Q psy9003 511 YLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVD 590 (1276)
Q Consensus 511 ~~~t~~~~a~~~g~~e~~~~lv~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~ 590 (1276)
.+.+....|...|+++.+++|+..++++|.-+. ..-|-.|.|+..|+.+.+++|++.++++|.....- -|
T Consensus 81 ~~~~~L~~aa~~G~~~~vk~LL~~Gadin~~d~-----~G~TpLh~Aa~~g~~eiv~~LL~~Gadvn~~d~~G-----~T 150 (664)
T PTZ00322 81 MLTVELCQLAASGDAVGARILLTGGADPNCRDY-----DGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDG-----KT 150 (664)
T ss_pred hhHHHHHHHHHcCCHHHHHHHHHCCCCCCCcCC-----CCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCC-----CC
Confidence 344556677889999999999999888875444 34466677779999999999999999998443322 46
Q ss_pred hhcccccCCCHHHHHHHHhh
Q psy9003 591 ECHKAGLFGTPEQLKYLVDE 610 (1276)
Q Consensus 591 ~~~~~~~~~~~e~~~~l~~~ 610 (1276)
..+-|...|..+.+++|++.
T Consensus 151 pLh~A~~~g~~~iv~~Ll~~ 170 (664)
T PTZ00322 151 PLELAEENGFREVVQLLSRH 170 (664)
T ss_pred HHHHHHHCCcHHHHHHHHhC
Confidence 66667789999999999987
|
|
| >cd02875 GH18_chitobiase Chitobiase (also known as di-N-acetylchitobiase) is a lysosomal glycosidase that hydrolyzes the reducing-end N-acetylglucosamine from the chitobiose core of oligosaccharides during the ordered degradation of asparagine-linked glycoproteins in eukaryotes | Back alignment and domain information |
|---|
Probab=91.09 E-value=0.82 Score=54.31 Aligned_cols=85 Identities=13% Similarity=0.026 Sum_probs=58.6
Q ss_pred HHHHHHHHHcCCEEEEEEeccccCCcccCCCcCCCCCCCcccccCCCCCCCCCCCcCCCCCcHHHHHHHHHHHHHHHHhC
Q psy9003 1040 KYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSNLRWYLDEY 1119 (1276)
Q Consensus 1040 K~LV~alHk~GI~VILDvV~NHt~~~~~~~~~~f~g~~~~Yy~~~~~g~~~~W~g~~LN~~np~Vr~~Iidsl~~Wv~ey 1119 (1276)
++++..+|++|++|++..-+. .-...+|..|+.+++++.-++++|
T Consensus 67 ~~~~~~A~~~~v~v~~~~~~~-----------------------------------~~~l~~~~~R~~fi~siv~~~~~~ 111 (358)
T cd02875 67 DELLCYAHSKGVRLVLKGDVP-----------------------------------LEQISNPTYRTQWIQQKVELAKSQ 111 (358)
T ss_pred HHHHHHHHHcCCEEEEECccC-----------------------------------HHHcCCHHHHHHHHHHHHHHHHHh
Confidence 489999999999999741000 001357889999999999999999
Q ss_pred CCcEEccCCccccccccCCCCCCCCCCCccccCCCCCch-HHHHHHHHHHHHHhhCCCe
Q psy9003 1120 QFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTD-ALIYLMVANKFLHDKYPEI 1177 (1276)
Q Consensus 1120 gVDGFRfD~a~~L~~~d~g~g~~~~~~~~~~~~~~~d~~-a~~Fl~el~~~Vr~~~Pdv 1177 (1276)
|.||+-+|--.-. .. ...+.+ -..|++++++.+++..+..
T Consensus 112 gfDGIdIDwE~p~-------------~~-----~~~d~~~~t~llkelr~~l~~~~~~~ 152 (358)
T cd02875 112 FMDGINIDIEQPI-------------TK-----GSPEYYALTELVKETTKAFKKENPGY 152 (358)
T ss_pred CCCeEEEcccCCC-------------CC-----CcchHHHHHHHHHHHHHHHhhcCCCc
Confidence 9999999952211 00 011222 2468999999998776553
|
Chitobiase can only do so if the asparagine that joins the oligosaccharide to protein is previously removed by a glycosylasparaginase. Chitobiase is therefore the final step in the lysosomal degradation of the protein/carbohydrate linkage component of asparagine-linked glycoproteins. The catalytic domain of chitobiase is an eight-stranded alpha/beta barrel fold similar to that of other family 18 glycosyl hydrolases such as hevamine and chitotriosidase. |
| >cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus | Back alignment and domain information |
|---|
Probab=90.64 E-value=0.45 Score=54.80 Aligned_cols=84 Identities=14% Similarity=0.183 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHcCCEEEEEEeccccCCcccCCCcCCCCCCCcccccCCCCCCCCCCCcCCCCCcHHHHHHHHHHHHHHHH
Q psy9003 1038 QLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSNLRWYLD 1117 (1276)
Q Consensus 1038 EfK~LV~alHk~GI~VILDvV~NHt~~~~~~~~~~f~g~~~~Yy~~~~~g~~~~W~g~~LN~~np~Vr~~Iidsl~~Wv~ 1117 (1276)
+.++||+++|++|++|++-+.+........ ..|.. +..........-....+|+.||+.++...+.+..-+.
T Consensus 75 dp~~mi~~Lh~~G~k~v~~v~P~~~~~~~~---~~y~~-----~~~~~~~~~~~~~~~~~D~tnp~a~~~w~~~~~~~~~ 146 (292)
T cd06595 75 DPEKLLQDLHDRGLKVTLNLHPADGIRAHE---DQYPE-----MAKALGVDPATEGPILFDLTNPKFMDAYFDNVHRPLE 146 (292)
T ss_pred CHHHHHHHHHHCCCEEEEEeCCCcccCCCc---HHHHH-----HHHhcCCCcccCCeEEecCCCHHHHHHHHHHHHHHHH
Confidence 447999999999999999886643111100 00100 1110000000001135799999999987777776677
Q ss_pred hCCCcEEccCCc
Q psy9003 1118 EYQFDGFRFDGV 1129 (1276)
Q Consensus 1118 eygVDGFRfD~a 1129 (1276)
++|||||-.|+-
T Consensus 147 ~~Gidg~W~D~~ 158 (292)
T cd06595 147 KQGVDFWWLDWQ 158 (292)
T ss_pred hcCCcEEEecCC
Confidence 799999999953
|
Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. |
| >PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature | Back alignment and domain information |
|---|
Probab=90.50 E-value=0.13 Score=39.89 Aligned_cols=24 Identities=25% Similarity=0.336 Sum_probs=21.4
Q ss_pred ccchhccccCCHhHHHhhcccccc
Q psy9003 419 DECHKAGLFGTPEQLKYLVDECHK 442 (1276)
Q Consensus 419 t~lh~a~~~~~~~~~~yli~~~~~ 442 (1276)
||||.|+.+|+.+++++||..+-.
T Consensus 4 TpLh~A~~~~~~~~v~~Ll~~ga~ 27 (33)
T PF00023_consen 4 TPLHYAAQRGHPDIVKLLLKHGAD 27 (33)
T ss_dssp BHHHHHHHTTCHHHHHHHHHTTSC
T ss_pred cHHHHHHHHHHHHHHHHHHHCcCC
Confidence 999999999999999999995443
|
Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A .... |
| >COG0666 Arp FOG: Ankyrin repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.43 E-value=0.35 Score=50.02 Aligned_cols=122 Identities=21% Similarity=0.126 Sum_probs=95.1
Q ss_pred hhhhcccccCCChhhhhhhhhhhhhhccCCCHHHHHHHhhhhcccccCCC-----HHHHHHHHhhhh--hcC-CCCCcch
Q psy9003 475 VDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGT-----PEQLKYLVDECH--KAG-LFGTPEQ 546 (1276)
Q Consensus 475 v~~~~~a~~~~~~e~~~~lv~~~~~~~~~~~~~~~~~~~t~~~~a~~~g~-----~e~~~~lv~~~~--~~~-~~~t~~~ 546 (1276)
.+..|.+...+..+.+++|+....+++.+.. ...|..+-|..+|+ ++++++|++.++ +++ ..+.
T Consensus 74 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-----~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~--- 145 (235)
T COG0666 74 RLPLHSAASKGDDKIVKLLLASGADVNAKDA-----DGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDE--- 145 (235)
T ss_pred cCHHHHHHHcCcHHHHHHHHHcCCCcccccC-----CCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCccccCC---
Confidence 5777888888888888899998888876664 34677777777888 999999999999 454 3344
Q ss_pred hhhhhhhhhccccCCCHHHHHHHHHhhhhccCCCChhhhhhhhhhhcccccCCCHHHHHHHHhhh
Q psy9003 547 LKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDEC 611 (1276)
Q Consensus 547 l~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~ 611 (1276)
...|.++.|..+|..+.+++|.+.++.++.. -.+--|...-|...|.++.++.|....
T Consensus 146 --~g~tpl~~A~~~~~~~~~~~ll~~~~~~~~~-----~~~g~t~l~~a~~~~~~~~~~~l~~~~ 203 (235)
T COG0666 146 --DGNTPLHWAALNGDADIVELLLEAGADPNSR-----NSYGVTALDPAAKNGRIELVKLLLDKG 203 (235)
T ss_pred --CCCchhHHHHHcCchHHHHHHHhcCCCCccc-----ccCCCcchhhhcccchHHHHHHHHhcC
Confidence 5677888888999999999999998888843 112235555666999999999999865
|
|
| >PLN02635 disproportionating enzyme | Back alignment and domain information |
|---|
Probab=90.28 E-value=1 Score=56.24 Aligned_cols=139 Identities=17% Similarity=0.210 Sum_probs=77.8
Q ss_pred HHHHHHHHHHHHHcCCEEEEEEecc--ccCCcccCCC--cCC---------CCCCCcccccCCCCCCCCCCCcCCCCCcH
Q psy9003 1036 PEQLKYLVDECHKAGLYVLLDVVHS--HASKNVLDGL--NEF---------DGTQACFFHDGPRGTHPLWDSRLFNYSEI 1102 (1276)
Q Consensus 1036 ~eEfK~LV~alHk~GI~VILDvV~N--Ht~~~~~~~~--~~f---------~g~~~~Yy~~~~~g~~~~W~g~~LN~~np 1102 (1276)
-++++++-+.|+++||++|-|+.+- +-+.+..... ... -|..|+||... -.+|+.|.+|+..-
T Consensus 223 ~~Qw~~l~~yA~~~Gi~L~gDlpi~Va~dSaDvWa~~~lF~ld~~g~p~~~aGaPPD~Fs~~----GQ~WG~P~y~w~~l 298 (538)
T PLN02635 223 QRQWQAVRSYANEKGISIIGDMPIYVGGHSADVWANRKLFLLNKTGFPLLVSGVPPDAFSET----GQLWGSPLYDWKAM 298 (538)
T ss_pred HHHHHHHHHHHHHCCCEEEEEeecccCCCcHHHhcCHHhhcCCCCCCcceeeeCCCCcCCcc----cccCCCcCcCHHHH
Confidence 3567888999999999999999953 3333321111 111 24456777542 34788777766431
Q ss_pred --HHHHHHHHHHHHHHHhCCCcEEccCCccccccccCCCCCCCC-CCCccccCCCCCchHHHHHHHHHHHHHhhCCCeEE
Q psy9003 1103 --EVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFS-GHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIIT 1179 (1276)
Q Consensus 1103 --~Vr~~Iidsl~~Wv~eygVDGFRfD~a~~L~~~d~g~g~~~~-~~~~~~~~~~~d~~a~~Fl~el~~~Vr~~~Pdvil 1179 (1276)
.--+..++-+++=++ .+|+.|+|-...+.+. +..+ +.....-|.-+..+..+++. .+.+..+++.+
T Consensus 299 ~~~gy~ww~~Rlr~~~~--~~d~lRIDHf~Gf~r~-----W~IP~g~~ta~~G~wv~~Pg~~l~~----~l~~~~~~~~v 367 (538)
T PLN02635 299 AKDGYSWWAGRMRRALE--LYDEFRIDHFRGFAGY-----WAVPADAKTAMNGRWKVGPGKSFFD----AIKKAVGKIDI 367 (538)
T ss_pred HhcCcHHHHHHHHHHHH--hCCeEEecchhhhhee-----eeccCCCCCCCCCeeeeCCHHHHHH----HHHHHcCCCCE
Confidence 122356666666666 6888999965443211 0000 00001111112223334443 45667789999
Q ss_pred EEEccCCCCC
Q psy9003 1180 IAEDVSGMPA 1189 (1276)
Q Consensus 1180 IAE~~s~~p~ 1189 (1276)
|||+.+.-|.
T Consensus 368 IaEDLG~I~~ 377 (538)
T PLN02635 368 IAEDLGVITE 377 (538)
T ss_pred EEeeCCCCCH
Confidence 9998776554
|
|
| >COG1501 Alpha-glucosidases, family 31 of glycosyl hydrolases [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=90.17 E-value=0.41 Score=62.08 Aligned_cols=88 Identities=18% Similarity=0.328 Sum_probs=59.7
Q ss_pred HHHHHHHHHcCCEEEEEEeccccCCcccCCCcCC-CCCCCcccccCCCCCC---CCCC--CcCCCCCcHHHHHHHHHHHH
Q psy9003 1040 KYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEF-DGTQACFFHDGPRGTH---PLWD--SRLFNYSEIEVLRFLLSNLR 1113 (1276)
Q Consensus 1040 K~LV~alHk~GI~VILDvV~NHt~~~~~~~~~~f-~g~~~~Yy~~~~~g~~---~~W~--g~~LN~~np~Vr~~Iidsl~ 1113 (1276)
|+||+.+|++||++|.=+.+.=..+. + .| ......||..+++|.. ..|. +.-+||.||++|++..+...
T Consensus 324 k~mi~~l~~~Gikl~~~i~P~i~~d~-~----~~~e~~~~Gy~~k~~~g~~~~~~~w~~~~a~~DFtnp~~r~Ww~~~~~ 398 (772)
T COG1501 324 KQMIAELHEKGIKLIVIINPYIKQDS-P----LFKEAIEKGYFVKDPDGEIYQADFWPGNSAFPDFTNPDAREWWASDKK 398 (772)
T ss_pred HHHHHHHHhcCceEEEEeccccccCC-c----hHHHHHHCCeEEECCCCCEeeecccCCcccccCCCCHHHHHHHHHHHH
Confidence 39999999999999987765532222 1 11 1222456666666553 3444 46789999999999996444
Q ss_pred HHHHhCCCcEEccCCcccc
Q psy9003 1114 WYLDEYQFDGFRFDGVTSM 1132 (1276)
Q Consensus 1114 ~Wv~eygVDGFRfD~a~~L 1132 (1276)
.-+.++|||||-.|+-.-.
T Consensus 399 ~~l~d~Gv~g~W~D~nEp~ 417 (772)
T COG1501 399 KNLLDLGVDGFWNDMNEPE 417 (772)
T ss_pred hHHHhcCccEEEccCCCCc
Confidence 4344489999999975543
|
|
| >KOG0506|consensus | Back alignment and domain information |
|---|
Probab=89.94 E-value=0.27 Score=59.12 Aligned_cols=82 Identities=18% Similarity=0.066 Sum_probs=60.5
Q ss_pred ccccCCChhhhHHhhhhhccccCCCChhhHHHHHhhhcccccCCChhHHHHHhhhcccccCCCChhhhhcccccchhccc
Q psy9003 347 KAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGL 426 (1276)
Q Consensus 347 ~a~~~g~ie~~~yLi~~~h~~~~~~~~e~~~~~~~~~~~a~~~~~id~vkyLi~~~h~~~~~~~~~~~~~~vt~lh~a~~ 426 (1276)
.|...|-+.-++-+-=-++...-...+ ..|-.|-|+..|++++||||||.|..+|-.-+.=+. |||..|-.
T Consensus 512 ~aa~~GD~~alrRf~l~g~D~~~~DyD-----~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~r----tPlDdA~~ 582 (622)
T KOG0506|consen 512 YAAKNGDLSALRRFALQGMDLETKDYD-----DRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGR----TPLDDAKH 582 (622)
T ss_pred hhhhcCCHHHHHHHHHhcccccccccc-----cchhheeecccCceeHHHHHHHHHcCCCChhhccCC----CcchHhHh
Confidence 444556666666554444433333223 245566677789999999999999999988887788 99999999
Q ss_pred cCCHhHHHhhc
Q psy9003 427 FGTPEQLKYLV 437 (1276)
Q Consensus 427 ~~~~~~~~yli 437 (1276)
.+|.+|+|+|-
T Consensus 583 F~h~~v~k~L~ 593 (622)
T KOG0506|consen 583 FKHKEVVKLLE 593 (622)
T ss_pred cCcHHHHHHHH
Confidence 99999999874
|
|
| >PRK14508 4-alpha-glucanotransferase; Provisional | Back alignment and domain information |
|---|
Probab=89.67 E-value=1.3 Score=54.87 Aligned_cols=143 Identities=17% Similarity=0.238 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHHHcCCEEEEEEeccccCCcc-cCC-CcCC-----------CCCCCcccccCCCCCCCCCCCcCCCCCcH
Q psy9003 1036 PEQLKYLVDECHKAGLYVLLDVVHSHASKNV-LDG-LNEF-----------DGTQACFFHDGPRGTHPLWDSRLFNYSEI 1102 (1276)
Q Consensus 1036 ~eEfK~LV~alHk~GI~VILDvV~NHt~~~~-~~~-~~~f-----------~g~~~~Yy~~~~~g~~~~W~g~~LN~~np 1102 (1276)
-++++++.+.|+++||++|.|+.+.=...+. .|. ...| -|..|++|.. . -.+|+.|.+|+..-
T Consensus 197 ~~Q~~~~~~yA~~~Gi~L~gDLpigV~~dsaDvWa~~~lF~l~~~~~p~~vaGaPPD~Fs~--~--GQ~WG~P~y~w~~l 272 (497)
T PRK14508 197 FRQWKALKAYANDKGIEIIGDLPIYVAYDSADVWANPELFKLDEDGKPTVVAGVPPDYFSE--T--GQLWGNPVYNWDAL 272 (497)
T ss_pred HHHHHHHHHHHHHCCCEEEEeeecccCCCCHHHHcChhhhcCCCCCCcceeeeCCCCCCCc--c--cCcCCCCCcCHHHH
Confidence 4678889999999999999999875222111 111 1111 2444666643 2 24788777766531
Q ss_pred H--HHHHHHHHHHHHHHhCCCcEEccCCccccccccCCCCCCCC-CCCccccCCCCCchHHHHHHHHHHHHHhhCCCeEE
Q psy9003 1103 E--VLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFS-GHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIIT 1179 (1276)
Q Consensus 1103 ~--Vr~~Iidsl~~Wv~eygVDGFRfD~a~~L~~~d~g~g~~~~-~~~~~~~~~~~d~~a~~Fl~el~~~Vr~~~Pdvil 1179 (1276)
. --+..++-+++=++ .+|++|+|-+..+.+. +..+ +......|.-+..+..+++..+. .+.+++.+
T Consensus 273 ~~~gy~ww~~rlr~~~~--~~~~lRIDH~~Gf~r~-----W~IP~~~~~a~~G~~v~~p~~~l~~~l~----~e~~~~~v 341 (497)
T PRK14508 273 RKDGYRWWIERLRRSFK--LYDIVRIDHFRGFEAY-----WEIPAGEKTAINGRWVPGPGKDLFEAVK----EELGDLPI 341 (497)
T ss_pred HhcCcHHHHHHHHHHHH--hCCeEEecchhhhcee-----eeecCCCCCCCCCeeecCCHHHHHHHHH----HHhCCCCE
Confidence 1 12346666666666 6888999965544211 0000 00001111112223334554443 44488999
Q ss_pred EEEccCCCCCCccc
Q psy9003 1180 IAEDVSGMPASCRP 1193 (1276)
Q Consensus 1180 IAE~~s~~p~~~~p 1193 (1276)
|||+.+.-|.-.+.
T Consensus 342 igEDLG~vp~~V~~ 355 (497)
T PRK14508 342 IAEDLGVITPDVEE 355 (497)
T ss_pred EEeECCCCCHHHHH
Confidence 99998776654433
|
|
| >PRK14582 pgaB outer membrane N-deacetylase; Provisional | Back alignment and domain information |
|---|
Probab=89.63 E-value=2.2 Score=54.65 Aligned_cols=79 Identities=16% Similarity=0.069 Sum_probs=51.3
Q ss_pred HHHcCCEEEEEEeccccCCcccCCCcCCCCCCCcccc--cCCCCCCCCCCCcCCCCCcHHHHHHHHHHHHHHHHhCCCcE
Q psy9003 1046 CHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFH--DGPRGTHPLWDSRLFNYSEIEVLRFLLSNLRWYLDEYQFDG 1123 (1276)
Q Consensus 1046 lHk~GI~VILDvV~NHt~~~~~~~~~~f~g~~~~Yy~--~~~~g~~~~W~g~~LN~~np~Vr~~Iidsl~~Wv~eygVDG 1123 (1276)
+|++|++|..-+-+=-..-... . .. ...+. .++...++.|... |+...|+||+.|.+...-.++.|.|||
T Consensus 390 ~~r~~v~v~AWmp~~~~~~~~~--~----~~-~~~~~~~~~~~~~~~~~~~r-l~P~~pe~r~~i~~i~~dla~~~~~dG 461 (671)
T PRK14582 390 RTRAGVNVYAWMPVLSFDLDPT--L----PR-VKRLDTGEGKAQIHPEQYRR-LSPFDDRVRAQVGMLYEDLAGHAAFDG 461 (671)
T ss_pred HHhhCCEEEEeccceeeccCCC--c----ch-hhhccccCCccccCCCCCcC-CCCCCHHHHHHHHHHHHHHHHhCCCce
Confidence 8999999976654332211000 0 00 01111 1122235567554 999999999999999999999999999
Q ss_pred EccCCcccc
Q psy9003 1124 FRFDGVTSM 1132 (1276)
Q Consensus 1124 FRfD~a~~L 1132 (1276)
.-||-=..+
T Consensus 462 ilf~Dd~~l 470 (671)
T PRK14582 462 ILFHDDAVL 470 (671)
T ss_pred EEecccccc
Confidence 999865444
|
|
| >KOG3625|consensus | Back alignment and domain information |
|---|
Probab=89.47 E-value=0.5 Score=60.58 Aligned_cols=34 Identities=24% Similarity=0.272 Sum_probs=30.8
Q ss_pred CHHHHHHHHHHHHH-cCCEEEEEEeccccCCcccC
Q psy9003 1035 TPEQLKYLVDECHK-AGLYVLLDVVHSHASKNVLD 1068 (1276)
Q Consensus 1035 t~eEfK~LV~alHk-~GI~VILDvV~NHt~~~~~~ 1068 (1276)
+.+|.++||+.||+ -||--|-|+|+|||+.+..|
T Consensus 194 s~eDV~~lV~~l~rewnvlsi~DvV~NHtAnns~W 228 (1521)
T KOG3625|consen 194 SFEDVGQLVEKLKREWNVLSITDVVYNHTANNSKW 228 (1521)
T ss_pred CHHHHHHHHHHHHhhcCeeeeehhhhhccccCCch
Confidence 67999999999995 78999999999999998755
|
|
| >cd06603 GH31_GANC_GANAB_alpha This family includes the closely related glycosyl hydrolase family 31 (GH31) isozymes, neutral alpha-glucosidase C (GANC) and the alpha subunit of heterodimeric neutral alpha-glucosidase AB (GANAB) | Back alignment and domain information |
|---|
Probab=89.17 E-value=0.46 Score=55.82 Aligned_cols=89 Identities=9% Similarity=0.020 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHcCCEEEEEEeccccCCcccCCCcCC-CCCCCcccccCCCCC---CCCCCC--cCCCCCcHHHHHHHHHH
Q psy9003 1038 QLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEF-DGTQACFFHDGPRGT---HPLWDS--RLFNYSEIEVLRFLLSN 1111 (1276)
Q Consensus 1038 EfK~LV~alHk~GI~VILDvV~NHt~~~~~~~~~~f-~g~~~~Yy~~~~~g~---~~~W~g--~~LN~~np~Vr~~Iids 1111 (1276)
+.++||+++|++|++|++-+.+--..... ...| .+....||..+++|. ...|.+ ..+|+.||+++++..+.
T Consensus 65 dp~~mi~~L~~~G~k~~~~~~P~v~~~~~---~~~y~e~~~~g~~vk~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~ 141 (339)
T cd06603 65 DPEKMQEKLASKGRKLVTIVDPHIKRDDG---YYVYKEAKDKGYLVKNSDGGDFEGWCWPGSSSWPDFLNPEVRDWWASL 141 (339)
T ss_pred CHHHHHHHHHHCCCEEEEEecCceecCCC---CHHHHHHHHCCeEEECCCCCEEEEEECCCCcCCccCCChhHHHHHHHH
Confidence 44789999999999999987644221110 0011 112234554444432 123443 46899999999999999
Q ss_pred HHHHHH--hCCCcEEccCCc
Q psy9003 1112 LRWYLD--EYQFDGFRFDGV 1129 (1276)
Q Consensus 1112 l~~Wv~--eygVDGFRfD~a 1129 (1276)
++..+. ..++|||-+|+.
T Consensus 142 ~~~~~~~~~~g~~g~w~D~~ 161 (339)
T cd06603 142 FSYDKYKGSTENLYIWNDMN 161 (339)
T ss_pred HHHHhhcccCCCceEEeccC
Confidence 998876 469999999964
|
Initially distinguished on the basis of differences in electrophoretic mobility in starch gel, GANC and GANAB have been shown to have other differences, including those of substrate specificity. GANC and GANAB are key enzymes in glycogen metabolism that hydrolyze terminal, non-reducing 1,4-linked alpha-D-glucose residues from glycogen in the endoplasmic reticulum. The GANC/GANAB family includes the alpha-glucosidase II (ModA) from Dictyostelium discoideum as well as the alpha-glucosidase II (GLS2, or ROT2 - Reversal of TOR2 lethality protein 2) from Saccharomyces cerevisiae. |
| >KOG0502|consensus | Back alignment and domain information |
|---|
Probab=88.85 E-value=0.97 Score=50.26 Aligned_cols=230 Identities=15% Similarity=-0.006 Sum_probs=138.8
Q ss_pred CCChhhhHHhhhhhccccC-CCChhhHHHHHhhhcccccCCChhHHHHHhhhcccccCCCChhhhhcccccchhccccCC
Q psy9003 351 FGTPEQLKYLVDECHKAGL-FGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGT 429 (1276)
Q Consensus 351 ~g~ie~~~yLi~~~h~~~~-~~~~e~~~~~~~~~~~a~~~~~id~vkyLi~~~h~~~~~~~~~~~~~~vt~lh~a~~~~~ 429 (1276)
.|.++--..|+++|..--. ++.. .++-+..+|..|+.+.++--|-..+..++++|. ..+|.|+-.+|
T Consensus 41 m~~t~p~~~l~~~~s~~~~~lge~--------~~~~~~~s~nsd~~v~s~~~~~~~~~~t~p~g~----~~~~v~ap~~s 108 (296)
T KOG0502|consen 41 MGTTEPRCALTAEISALRNALGES--------LLTVAVRSGNSDVAVQSAQLDPDAIDETDPEGW----SALLVAAPCGS 108 (296)
T ss_pred ccccchhHHHHHHHHHHHHhcCCc--------ccchhhhcCCcHHHHHhhccCCCCCCCCCchhh----hhhhhcCCCCC
Confidence 3456666677777762221 1111 122333478899999999999999999999998 88999998888
Q ss_pred HhHHHhhcccccccccCCChhhHHHHHHHHhHhccCCChhhHHHhhhhhcccccCCChhhhhhhhhhhhhhccCCC--HH
Q psy9003 430 PEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGT--PE 507 (1276)
Q Consensus 430 ~~~~~yli~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~~~~~~~v~~~~~a~~~~~~e~~~~lv~~~~~~~~~~~--~~ 507 (1276)
++.+.-+|++.+--.--.... --+.-=|+-|| +|-..-..-|.++| +
T Consensus 109 ~~k~sttltN~~rgnevs~~p-----------------------------~s~~slsVhql-~L~~~~~~~~n~VN~~D- 157 (296)
T KOG0502|consen 109 VDKVSTTLTNGARGNEVSLMP-----------------------------WSPLSLSVHQL-HLDVVDLLVNNKVNACD- 157 (296)
T ss_pred cceeeeeecccccCCcccccc-----------------------------CChhhHHHHHH-HHHHHHHHhhccccCcc-
Confidence 888888887765321111000 00011112222 22222222222332 1
Q ss_pred HHHHHhhhhcccccCCCHHHHHHHHhhhhhcCCCCCcchhhhhhhhhhccccCCCHHHHHHHHHhhhhcc---CCCChhh
Q psy9003 508 QLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAG---LFGTPEQ 584 (1276)
Q Consensus 508 ~~~~~~t~~~~a~~~g~~e~~~~lv~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~---~~~~~~~ 584 (1276)
|..+|+.--|-.+|.|++|.+|.+-++|--. .-+|.=+...-|+..|=+..+++|.+-.-++| -|..-+|
T Consensus 158 --e~GfTpLiWAaa~G~i~vV~fLL~~GAdp~~-----lgk~resALsLAt~ggytdiV~lLL~r~vdVNvyDwNGgTpL 230 (296)
T KOG0502|consen 158 --EFGFTPLIWAAAKGHIPVVQFLLNSGADPDA-----LGKYRESALSLATRGGYTDIVELLLTREVDVNVYDWNGGTPL 230 (296)
T ss_pred --ccCchHhHHHHhcCchHHHHHHHHcCCChhh-----hhhhhhhhHhHHhcCChHHHHHHHHhcCCCcceeccCCCcee
Confidence 1346777777789999999999987775332 44577777777888899999999999888888 3444444
Q ss_pred hhhhhhhhcccccCCCHHHHHHHHhhhhhccCCCChhhh-hhhHHHhhhccCCCCHHHH
Q psy9003 585 LKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQL-KYLVDECHKAGLFGTPEQL 642 (1276)
Q Consensus 585 ~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 642 (1276)
+- |.+-+++.-++-|+.-+++- |-+++ -|.+--++-|+-+-.+.|+
T Consensus 231 ly--------Avrgnhvkcve~Ll~sGAd~----t~e~dsGy~~mdlAValGyr~Vqqv 277 (296)
T KOG0502|consen 231 LY--------AVRGNHVKCVESLLNSGADV----TQEDDSGYWIMDLAVALGYRIVQQV 277 (296)
T ss_pred ee--------eecCChHHHHHHHHhcCCCc----ccccccCCcHHHHHHHhhhHHHHHH
Confidence 32 22455566677777666554 44433 2444444445544444443
|
|
| >PRK14511 maltooligosyl trehalose synthase; Provisional | Back alignment and domain information |
|---|
Probab=88.33 E-value=0.51 Score=61.58 Aligned_cols=50 Identities=20% Similarity=0.103 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHhcccCCCCCeeEeecC---CCeEEEEEcCc----EEEEEeCCCC
Q psy9003 1215 ALFDAAMNTTEERFKWLSADPGYVSTKHE---GDKVIIFERAG----LLFAFNFNGT 1264 (1276)
Q Consensus 1215 ~~F~~~Ln~l~~~~p~L~~~~~~~l~nHD---~~RVlsf~R~~----ll~v~N~~~~ 1264 (1276)
..+.+.+.++|+.+|.|...+.+.....+ .+.|++|.|.. +++|+|-...
T Consensus 767 l~~~~~lL~lRr~~p~Lf~~G~y~pL~~~G~~a~~v~AFaR~~~~~~~vvvv~R~~~ 823 (879)
T PRK14511 767 LLLIARALRLRRDRPELFAGGEYLPLEVSGPHAGHVLAFARGGGGGRALTVAPRLPA 823 (879)
T ss_pred HHHHHHHHHHHHhCHHHhhCCceEEEEecCCCCCcEEEEEEecCCceEEEEeccccc
Confidence 45788999999999988543444444333 56799999943 8888876544
|
|
| >KOG0515|consensus | Back alignment and domain information |
|---|
Probab=88.32 E-value=0.36 Score=58.68 Aligned_cols=122 Identities=16% Similarity=0.058 Sum_probs=90.2
Q ss_pred CCChhHHHHHhhhcccccCCCChhhhhcccccchhccccCCHhHHHhhcccccccccCCChhhHHHHHHHHhHhccCCCh
Q psy9003 389 FGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTP 468 (1276)
Q Consensus 389 ~~~id~vkyLi~~~h~~~~~~~~~~~~~~vt~lh~a~~~~~~~~~~yli~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~ 468 (1276)
.|-.|+|.-.|-|-. ||..-++||- |.||.|.--||-++||.||+.+-- .|--.+|
T Consensus 560 eGEldlVq~~i~ev~-DpSqpNdEGI----TaLHNAiCaghyeIVkFLi~~gan-------------------VNa~DSd 615 (752)
T KOG0515|consen 560 EGELDLVQRIIYEVT-DPSQPNDEGI----TALHNAICAGHYEIVKFLIEFGAN-------------------VNAADSD 615 (752)
T ss_pred cchHHHHHHHHHhhc-CCCCCCccch----hHHhhhhhcchhHHHHHHHhcCCc-------------------ccCccCC
Confidence 688899888888876 8999999999 999999988999999888875532 2333566
Q ss_pred hhHHHhhhhhcccccCCChhhhhhhhhhhhhhccCC-C-HHHHHHHhhhhcccccCCCHHHHHHHHhhhhhcC-CCCC
Q psy9003 469 EQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFG-T-PEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAG-LFGT 543 (1276)
Q Consensus 469 ~~~~~~v~~~~~a~~~~~~e~~~~lv~~~~~~~~~~-~-~~~~~~~~t~~~~a~~~g~~e~~~~lv~~~~~~~-~~~t 543 (1276)
. ||..|||..-++....+.||+-++.|---- + .|-..--|.. -+.|=..-++||-|+-.+.| +|..
T Consensus 616 G-----WTPLHCAASCNnv~~ckqLVe~GaavfAsTlSDmeTa~eKCee----~eeGY~~CsqyL~~vqesmG~mN~G 684 (752)
T KOG0515|consen 616 G-----WTPLHCAASCNNVPMCKQLVESGAAVFASTLSDMETAAEKCEE----MEEGYDQCSQYLYGVQESMGSMNKG 684 (752)
T ss_pred C-----CchhhhhhhcCchHHHHHHHhccceEEeeecccccchhhhcch----hhhhHHHHHHHHHHHHHhhcccccc
Confidence 7 999999999999999999999887764211 1 1110000222 24677778899999988888 4444
|
|
| >PLN02763 hydrolase, hydrolyzing O-glycosyl compounds | Back alignment and domain information |
|---|
Probab=88.16 E-value=0.93 Score=59.94 Aligned_cols=88 Identities=14% Similarity=0.246 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHcCCEEEEEEeccccCCcccCCCcCC-CCCCCcccccCCCCCC---CCCCC--cCCCCCcHHHHHHHHHH
Q psy9003 1038 QLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEF-DGTQACFFHDGPRGTH---PLWDS--RLFNYSEIEVLRFLLSN 1111 (1276)
Q Consensus 1038 EfK~LV~alHk~GI~VILDvV~NHt~~~~~~~~~~f-~g~~~~Yy~~~~~g~~---~~W~g--~~LN~~np~Vr~~Iids 1111 (1276)
+.++||+++|++|++++.=+.+ +...+ .+...+ .+....+|..+++|.. ..|.+ .-.||.||.+|++..+.
T Consensus 242 dP~~mv~~Lh~~G~kvv~iidP-gI~~d--~gY~~y~eg~~~~~fvk~~~G~~y~G~vWpG~~~fpDFTnP~ar~WW~~~ 318 (978)
T PLN02763 242 DPKGLADDLHSIGFKAIWMLDP-GIKAE--EGYFVYDSGCENDVWIQTADGKPFVGEVWPGPCVFPDFTNKKTRSWWANL 318 (978)
T ss_pred CHHHHHHHHHHCCCEEEEEEcC-CCccC--CCCHHHHhHhhcCeeEECCCCCeeEeeecCCCccccCCCCHHHHHHHHHH
Confidence 4479999999999999775433 22211 011111 1223345544444431 34554 34699999999999999
Q ss_pred HHHHHHhCCCcEEccCCc
Q psy9003 1112 LRWYLDEYQFDGFRFDGV 1129 (1276)
Q Consensus 1112 l~~Wv~eygVDGFRfD~a 1129 (1276)
++.+++ .|||||-+|+-
T Consensus 319 ~k~l~d-~GVDG~W~Dmn 335 (978)
T PLN02763 319 VKDFVS-NGVDGIWNDMN 335 (978)
T ss_pred HHHHhc-CCCcEEEccCC
Confidence 998887 79999999974
|
|
| >TIGR02401 trehalose_TreY malto-oligosyltrehalose synthase | Back alignment and domain information |
|---|
Probab=87.59 E-value=0.51 Score=61.29 Aligned_cols=49 Identities=16% Similarity=0.102 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHhcccCCCCCeeEe-e--cCCCeEEEEEcC----cEEEEEeCCC
Q psy9003 1215 ALFDAAMNTTEERFKWLSADPGYVST-K--HEGDKVIIFERA----GLLFAFNFNG 1263 (1276)
Q Consensus 1215 ~~F~~~Ln~l~~~~p~L~~~~~~~l~-n--HD~~RVlsf~R~----~ll~v~N~~~ 1263 (1276)
..+.+.+.++|+.+|.+-..+.+... . ...+.|++|.|. .+++++|...
T Consensus 714 l~~i~~lL~lRr~~p~lF~~G~y~pL~~~G~~~~~vvaFaR~~~~~~~vvvv~R~~ 769 (825)
T TIGR02401 714 LAVTAAALQLRREHPELFGQGDYQPLEAGGPGAAHVIAFARGTDRQAAIVVVTRLS 769 (825)
T ss_pred HHHHHHHHHHHHhCHHhhhcCCeEEEeccCCCcCcEEEEEEecCCcEEEEEEecch
Confidence 45778899999999964222333322 2 245679999995 4888888654
|
This enzyme, formally named (1-4)-alpha-D-glucan 1-alpha-D-glucosylmutase, is the TreY enzyme of the TreYZ pathway of trehalose biosynthesis, an alternative to the OtsAB pathway. Trehalose may be incorporated into more complex compounds but is best known as compatible solute. It is one of the most effective osmoprotectants, and unlike the various betaines does not require nitrogen for its synthesis. |
| >cd06542 GH18_EndoS-like Endo-beta-N-acetylglucosaminidases are bacterial chitinases that hydrolyze the chitin core of various asparagine (N)-linked glycans and glycoproteins | Back alignment and domain information |
|---|
Probab=87.44 E-value=1.5 Score=49.00 Aligned_cols=64 Identities=19% Similarity=0.239 Sum_probs=48.6
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEEeccccCCcccCCCcCCCCCCCcccccCCCCCCCCCCCcCCCCCcHHHHHHHHHHHHH
Q psy9003 1035 TPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSNLRW 1114 (1276)
Q Consensus 1035 t~eEfK~LV~alHk~GI~VILDvV~NHt~~~~~~~~~~f~g~~~~Yy~~~~~g~~~~W~g~~LN~~np~Vr~~Iidsl~~ 1114 (1276)
+.+++++.|+.+|++|+||++=+-.+|.+... ....+++-++.+.+++.-
T Consensus 49 ~~~~~~~~i~~l~~kG~KVl~sigg~~~~~~~------------------------------~~~~~~~~~~~fa~~l~~ 98 (255)
T cd06542 49 LLTNKETYIRPLQAKGTKVLLSILGNHLGAGF------------------------------ANNLSDAAAKAYAKAIVD 98 (255)
T ss_pred hhHHHHHHHHHHhhCCCEEEEEECCCCCCCCc------------------------------cccCCHHHHHHHHHHHHH
Confidence 46889999999999999999988655433220 011234567777888888
Q ss_pred HHHhCCCcEEccCC
Q psy9003 1115 YLDEYQFDGFRFDG 1128 (1276)
Q Consensus 1115 Wv~eygVDGFRfD~ 1128 (1276)
++++||+||+-+|-
T Consensus 99 ~v~~yglDGiDiD~ 112 (255)
T cd06542 99 TVDKYGLDGVDFDD 112 (255)
T ss_pred HHHHhCCCceEEee
Confidence 89999999999995
|
The endo-beta-N-acetylglucosaminidases have a glycosyl hydrolase family 18 (GH18) catalytic domain. Some members also have an additional C-terminal glycosyl hydrolase family 20 (GH20) domain while others have an N-terminal domain of unknown function (pfam08522). Members of this family include endo-beta-N-acetylglucosaminidase S (EndoS) from Streptococcus pyogenes, EndoF1, EndoF2, EndoF3, and EndoH from Flavobacterium meningosepticum, and EndoE from Enterococcus faecalis. EndoS is a secreted endoglycosidase from Streptococcus pyogenes that specifically hydrolyzes the glycan on human IgG between two core N-acetylglucosamine residues. EndoE is a secreted endoglycosidase, encoded by the ndoE gene in Enterococcus faecalis, that hydrolyzes the glycan on human RNase B. |
| >cd06601 GH31_lyase_GLase GLases (alpha-1,4-glucan lyases) are glycosyl hydrolase family 31 (GH31) enzymes that degrade alpha-1,4-glucans and maltooligosaccharides via a nonhydrolytic pathway to yield 1,5-D-anhydrofructose from the nonreducing end | Back alignment and domain information |
|---|
Probab=87.09 E-value=1.6 Score=51.61 Aligned_cols=66 Identities=15% Similarity=0.116 Sum_probs=48.7
Q ss_pred HHHHHHHHHcCCEEEEEEeccccCCcccCCCcCCCCCCCcccccCCCCCCCCCCCcCCCCCcHHHHHHHHHHHHHHHHhC
Q psy9003 1040 KYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSNLRWYLDEY 1119 (1276)
Q Consensus 1040 K~LV~alHk~GI~VILDvV~NHt~~~~~~~~~~f~g~~~~Yy~~~~~g~~~~W~g~~LN~~np~Vr~~Iidsl~~Wv~ey 1119 (1276)
++||+++|+.|++|++-+.+- ... | ....+.+.-.|+.||++|++..+..+.+.+ .
T Consensus 67 ~~mv~~L~~~G~klv~~i~P~-i~~----------g------------~~~~~~~~~pDftnp~ar~wW~~~~~~l~~-~ 122 (332)
T cd06601 67 KEMFDNLHNKGLKCSTNITPV-ISY----------G------------GGLGSPGLYPDLGRPDVREWWGNQYKYLFD-I 122 (332)
T ss_pred HHHHHHHHHCCCeEEEEecCc-eec----------C------------ccCCCCceeeCCCCHHHHHHHHHHHHHHHh-C
Confidence 689999999999998877533 110 0 001122345689999999999888888777 6
Q ss_pred CCcEEccCCc
Q psy9003 1120 QFDGFRFDGV 1129 (1276)
Q Consensus 1120 gVDGFRfD~a 1129 (1276)
|||||-.|+-
T Consensus 123 Gv~~~W~Dmn 132 (332)
T cd06601 123 GLEFVWQDMT 132 (332)
T ss_pred CCceeecCCC
Confidence 9999999974
|
GLases cleave the bond between C1 and O1 of the nonreducing sugar residue of alpha-glucans to generate a monosaccharide product with a double bond between C1 and C2. This family corresponds to subgroup 2 in the Ernst et al classification of GH31 enzymes. |
| >PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A | Back alignment and domain information |
|---|
Probab=86.99 E-value=0.21 Score=43.40 Aligned_cols=35 Identities=17% Similarity=0.145 Sum_probs=21.4
Q ss_pred ccccCCChhHHHHHhhhcccccCCCChhhhhcccccchhc
Q psy9003 385 KAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKA 424 (1276)
Q Consensus 385 ~a~~~~~id~vkyLi~~~h~~~~~~~~~~~~~~vt~lh~a 424 (1276)
-|...|+.|+|++|+ ...|++-..+.+++ ||+|.|
T Consensus 22 ~A~~~g~~~~v~~Ll-~~g~d~~~~d~~G~----Tpl~~A 56 (56)
T PF13857_consen 22 WAARYGHSEVVRLLL-QNGADPNAKDKDGQ----TPLHYA 56 (56)
T ss_dssp HHHHHT-HHHHHHHH-HCT--TT---TTS------HHHH-
T ss_pred HHHHcCcHHHHHHHH-HCcCCCCCCcCCCC----CHHHhC
Confidence 334468899999999 88999999999999 999987
|
|
| >PF13200 DUF4015: Putative glycosyl hydrolase domain | Back alignment and domain information |
|---|
Probab=85.22 E-value=2.1 Score=50.23 Aligned_cols=83 Identities=20% Similarity=0.325 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHHcCCEEEEEEeccccCCcccCCCcCCCCCCCcccccCCCCCCCCCC----CcCCCCCcHHHHHHHHHH
Q psy9003 1036 PEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWD----SRLFNYSEIEVLRFLLSN 1111 (1276)
Q Consensus 1036 ~eEfK~LV~alHk~GI~VILDvV~NHt~~~~~~~~~~f~g~~~~Yy~~~~~g~~~~W~----g~~LN~~np~Vr~~Iids 1111 (1276)
+.++++|++.||++||.+|-=+|.= .+.. +-...+.|.-...+|+ .|. ..-+|..+++||+|+++.
T Consensus 60 i~D~~~l~~~l~e~gIY~IARIv~F---kD~~-----la~~~pe~av~~~~G~--~w~d~~~~~WvnP~~~evw~Y~i~I 129 (316)
T PF13200_consen 60 IKDLKALVKKLKEHGIYPIARIVVF---KDPV-----LAEAHPEWAVKTKDGS--VWRDNEGEAWVNPYSKEVWDYNIDI 129 (316)
T ss_pred ccCHHHHHHHHHHCCCEEEEEEEEe---cChH-----HhhhChhhEEECCCCC--cccCCCCCccCCCCCHHHHHHHHHH
Confidence 5899999999999999999988742 1110 0011122222222222 222 134788899999999999
Q ss_pred HHHHHHhCCCcEEccCCc
Q psy9003 1112 LRWYLDEYQFDGFRFDGV 1129 (1276)
Q Consensus 1112 l~~Wv~eygVDGFRfD~a 1129 (1276)
.+..++ .|+|..-||-+
T Consensus 130 A~Eaa~-~GFdEIqfDYI 146 (316)
T PF13200_consen 130 AKEAAK-LGFDEIQFDYI 146 (316)
T ss_pred HHHHHH-cCCCEEEeeee
Confidence 999887 69999999964
|
|
| >cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas | Back alignment and domain information |
|---|
Probab=85.02 E-value=4.1 Score=45.81 Aligned_cols=87 Identities=15% Similarity=0.250 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHHcCCEEEEEEeccccCCcccCCCcCCCCCCCcccccCCCCCCCCCCCcCCCCCcHHHHHHHHHHHHHH
Q psy9003 1036 PEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSNLRWY 1115 (1276)
Q Consensus 1036 ~eEfK~LV~alHk~GI~VILDvV~NHt~~~~~~~~~~f~g~~~~Yy~~~~~g~~~~W~g~~LN~~np~Vr~~Iidsl~~W 1115 (1276)
..++..+++++|++|++|++=+- ++.... + .--..+|..|+.+++++..+
T Consensus 45 ~~~~~~~~~~~~~~~~kvl~sig-g~~~~~--------------------------~---~~~~~~~~~r~~fi~~lv~~ 94 (253)
T cd06545 45 RSELNSVVNAAHAHNVKILISLA-GGSPPE--------------------------F---TAALNDPAKRKALVDKIINY 94 (253)
T ss_pred HHHHHHHHHHHHhCCCEEEEEEc-CCCCCc--------------------------c---hhhhcCHHHHHHHHHHHHHH
Confidence 45788999999999999998542 211000 0 00235688899999999999
Q ss_pred HHhCCCcEEccCCccccccccCCCCCCCCCCCccccCCCCCchHHHHHHHHHHHHHhh
Q psy9003 1116 LDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDK 1173 (1276)
Q Consensus 1116 v~eygVDGFRfD~a~~L~~~d~g~g~~~~~~~~~~~~~~~d~~a~~Fl~el~~~Vr~~ 1173 (1276)
+++|++||+-+|.-..- . . ...-..|++++++.+++.
T Consensus 95 ~~~~~~DGIdiDwE~~~-------------~-------~-~~~~~~fv~~Lr~~l~~~ 131 (253)
T cd06545 95 VVSYNLDGIDVDLEGPD-------------V-------T-FGDYLVFIRALYAALKKE 131 (253)
T ss_pred HHHhCCCceeEEeeccC-------------c-------c-HhHHHHHHHHHHHHHhhc
Confidence 99999999999952210 0 0 012346899999888754
|
|
| >PF11941 DUF3459: Domain of unknown function (DUF3459); InterPro: IPR022567 This functionally uncharacterised domain is found in bacteria | Back alignment and domain information |
|---|
Probab=84.87 E-value=1.2 Score=41.72 Aligned_cols=48 Identities=21% Similarity=0.273 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHhcccCCCCCeeE-e-ecCCCeEEEEEc----CcEEEEEeCCCC
Q psy9003 1217 FDAAMNTTEERFKWLSADPGYVS-T-KHEGDKVIIFER----AGLLFAFNFNGT 1264 (1276)
Q Consensus 1217 F~~~Ln~l~~~~p~L~~~~~~~l-~-nHD~~RVlsf~R----~~ll~v~N~~~~ 1264 (1276)
|++.|+++|+.+|.|..+..-.+ . ..+.+.++.+.| +.+++++||++.
T Consensus 1 ~yr~Li~LRr~~PaL~~~~~~~~~~~~~~~~~l~~~~r~~~~~~l~v~~Nls~~ 54 (89)
T PF11941_consen 1 FYRRLIALRRQHPALRDGDFRFLEVERDAPDALLAFRRTGGGERLLVAFNLSDE 54 (89)
T ss_dssp HHHHHHHHHHHHTHHCCSEEEEEEEEEEEETTEEEEEEEETTEEEEEEEE-SSS
T ss_pred CHHHHHHHHhhCccccCCCcccEEEEecCCCEEEEEEEEcCCceEEEEEecCCC
Confidence 67899999999999987643222 2 244556778888 259999999986
|
It is about 110 amino acids in length and is found C-terminal to PF00128 from PFAM, PF02922 from PFAM. ; GO: 0033942 4-alpha-D-{(1->4)-alpha-D-glucano}trehalose trehalohydrolase activity; PDB: 2WC7_A 2WCS_A 2WKG_A 3M07_A 2PWD_A 1ZJB_A 2PWF_C 2PWE_A 2PWG_A 2PWH_A .... |
| >PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional | Back alignment and domain information |
|---|
Probab=84.76 E-value=0.83 Score=63.32 Aligned_cols=39 Identities=15% Similarity=0.192 Sum_probs=34.3
Q ss_pred CCChHHHHHHHHHHHHhcCc------------------------------CCCHHHHHHHHHHHHHcCCC
Q psy9003 141 LFGTPEQLKYLVDECHKAGL------------------------------FGTPEQLKYLVDECHKAGLF 180 (1276)
Q Consensus 141 ~~~y~e~a~~li~y~~~~~y------------------------------ygtp~~l~~~vd~~h~~~i~ 180 (1276)
=+++.. +..++||++++|+ |||.+||+.||++||++||+
T Consensus 754 ~~tf~~-~~~~l~Yl~~LGv~~i~lsPi~~a~~gs~hGYdv~D~~~idp~lG~~edf~~Lv~~ah~~Gi~ 822 (1693)
T PRK14507 754 DFTFAD-AEAILPYLAALGISHVYASPILKARPGSTHGYDIVDHSQINPEIGGEEGFERFCAALKAHGLG 822 (1693)
T ss_pred CCCHHH-HHHHhHHHHHcCCCEEEECCCcCCCCCCCCCCCCCCCCccCcccCCHHHHHHHHHHHHHCCCE
Confidence 357777 4567899999999 99999999999999999998
|
|
| >PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3 | Back alignment and domain information |
|---|
Probab=84.45 E-value=5 Score=47.59 Aligned_cols=119 Identities=19% Similarity=0.145 Sum_probs=65.2
Q ss_pred CCHHHHHHHHHHHHHcCCEEEEEEeccccCCcccCCCcCCCCCCCcccccCCCCCCCCCCCcCCCCCcHHHHHHHHHHHH
Q psy9003 1034 GTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSNLR 1113 (1276)
Q Consensus 1034 Gt~eEfK~LV~alHk~GI~VILDvV~NHt~~~~~~~~~~f~g~~~~Yy~~~~~g~~~~W~g~~LN~~np~Vr~~Iidsl~ 1113 (1276)
.+.+...+|.+++++.||+|+||+=|..+..+- +.......|.+.+++--...|.+|-.++|.
T Consensus 55 ~~~~~~~~~akrak~~Gm~vlldfHYSD~WaDP-----------------g~Q~~P~aW~~~~~~~l~~~v~~yT~~vl~ 117 (332)
T PF07745_consen 55 NDLEDVIALAKRAKAAGMKVLLDFHYSDFWADP-----------------GKQNKPAAWANLSFDQLAKAVYDYTKDVLQ 117 (332)
T ss_dssp TSHHHHHHHHHHHHHTT-EEEEEE-SSSS--BT-----------------TB-B--TTCTSSSHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCeEEEeecccCCCCCC-----------------CCCCCCccCCCCCHHHHHHHHHHHHHHHHH
Confidence 357888999999999999999999877654431 111123456554443334567788888888
Q ss_pred HHHHhCCCcEEccCCccccccccCCCCCCCCCCCccccCCCCCch-HHHHHHHHHHHHHhhCCCeEEEE
Q psy9003 1114 WYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTD-ALIYLMVANKFLHDKYPEIITIA 1181 (1276)
Q Consensus 1114 ~Wv~eygVDGFRfD~a~~L~~~d~g~g~~~~~~~~~~~~~~~d~~-a~~Fl~el~~~Vr~~~PdvilIA 1181 (1276)
...+ .|+. .|.+. +... ...|--|+ .+...+.+ -..+++.-.++||+..|++.++-
T Consensus 118 ~l~~-~G~~---pd~VQ-VGNE-in~Gmlwp------~g~~~~~~~~a~ll~ag~~AVr~~~p~~kV~l 174 (332)
T PF07745_consen 118 ALKA-AGVT---PDMVQ-VGNE-INNGMLWP------DGKPSNWDNLAKLLNAGIKAVREVDPNIKVML 174 (332)
T ss_dssp HHHH-TT-----ESEEE-ESSS-GGGESTBT------TTCTT-HHHHHHHHHHHHHHHHTHSSTSEEEE
T ss_pred HHHH-CCCC---ccEEE-eCcc-ccccccCc------CCCccCHHHHHHHHHHHHHHHHhcCCCCcEEE
Confidence 7665 3664 55443 1100 00011111 01112222 24577777899999999976553
|
2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A .... |
| >PRK11052 malQ 4-alpha-glucanotransferase; Provisional | Back alignment and domain information |
|---|
Probab=83.32 E-value=5.9 Score=51.20 Aligned_cols=141 Identities=16% Similarity=0.118 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHHcCC--EEEEEEeccccCCc-ccCC-Cc-----CCCCCCCcccccCCCCCCCCCCCcCCCCCcHH--HH
Q psy9003 1037 EQLKYLVDECHKAGL--YVLLDVVHSHASKN-VLDG-LN-----EFDGTQACFFHDGPRGTHPLWDSRLFNYSEIE--VL 1105 (1276)
Q Consensus 1037 eEfK~LV~alHk~GI--~VILDvV~NHt~~~-~~~~-~~-----~f~g~~~~Yy~~~~~g~~~~W~g~~LN~~np~--Vr 1105 (1276)
++++++-+.|+++|| ++|-|+.+.=...+ ..|. .. .--|..|++|... -.+|+.+.+|+..-. =-
T Consensus 355 ~Ql~~~~~~A~~~Gm~igL~gDLpvgv~~dsaDvWa~~~~F~l~~~~GaPPD~fs~~----GQ~WG~P~y~w~~l~~~gy 430 (695)
T PRK11052 355 SQFAACWQLSQQLGMPIGLYRDLAVGVAEGGAETWCDRELYCLKASVGAPPDILGPL----GQNWGLPPMDPHVLQARAY 430 (695)
T ss_pred HHHHHHHHHHHHCCCceeEEEeeeceECCCcHHHhCCHHHhcCCCcCCCCCCcCCcc----cccCCCcCcCHHHHHhcCc
Confidence 456778888999999 67999987522221 1221 11 1125556777542 247887777654211 11
Q ss_pred HHHHHHHHHHHHhCCCcEEccCCccccccccCCCCCCCC-CCCccccCCCCCchHHHHHHHHHHHHHhhCCCeEEEEEcc
Q psy9003 1106 RFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFS-GHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAEDV 1184 (1276)
Q Consensus 1106 ~~Iidsl~~Wv~eygVDGFRfD~a~~L~~~d~g~g~~~~-~~~~~~~~~~~d~~a~~Fl~el~~~Vr~~~PdvilIAE~~ 1184 (1276)
+..++.++.-++ +.|++|+|-+..+.+. +..+ |. ....|.-+..+.-.++..+ ++.+..+++.+|||+.
T Consensus 431 ~ww~~rlr~~~~--~~g~lRIDH~~Gl~rl-----W~IP~g~-~a~~G~yv~~P~~~ll~~l--ales~~~~~~vIgEDL 500 (695)
T PRK11052 431 QPFIDLLRANMQ--HCGALRIDHVMSLLRL-----WWIPYGE-TADQGAYVHYPVDDLLAIL--ALESQRHRCMVIGEDL 500 (695)
T ss_pred HHHHHHHHHHHH--hCCEEEecchhhhhee-----eecCCCC-CCCCCeeEeCCHHHHHHHH--HHHHhcCCCCEEEeeC
Confidence 345666666666 6889999966544221 0000 00 0111111112222344332 2356678899999998
Q ss_pred CCCCCCc
Q psy9003 1185 SGMPASC 1191 (1276)
Q Consensus 1185 s~~p~~~ 1191 (1276)
+.-|.-.
T Consensus 501 G~Vp~~V 507 (695)
T PRK11052 501 GTVPVEI 507 (695)
T ss_pred CCCCHHH
Confidence 7665443
|
|
| >KOG0512|consensus | Back alignment and domain information |
|---|
Probab=82.62 E-value=1.8 Score=46.88 Aligned_cols=120 Identities=15% Similarity=0.041 Sum_probs=80.0
Q ss_pred ChhhhHHhhhhhcccc-------CCCChhhHHHH--Hh--h---hcccccCCChhHHHHHhhhcccccCCC-Chhhhhcc
Q psy9003 353 TPEQLKYLVDECHKAG-------LFGTPEQLKYL--VD--E---CHKAGLFGTPEQLKYLVDECHKAGLFG-TPEQLKYL 417 (1276)
Q Consensus 353 ~ie~~~yLi~~~h~~~-------~~~~~e~~~~~--~~--~---~~~a~~~~~id~vkyLi~~~h~~~~~~-~~~~~~~~ 417 (1276)
+-+||-.|-+-.|-+| +.+++|+.|.. +. . .-.|...+.+.-|+-|.-|.-- -+++ +..+-
T Consensus 23 ~k~q~e~lr~h~~~~pgmfvS~W~ddsdeleE~dk~me~dp~rl~lwaae~nrl~eV~~lL~e~an-~vNtrD~D~Y--- 98 (228)
T KOG0512|consen 23 HKNQLEELRTHGHLIPGMFVSLWVDDSEELEEQDKNMEKDPIRLLLWAAEKNRLTEVQRLLSEKAN-HVNTRDEDEY--- 98 (228)
T ss_pred HHHHHHHHHhcCcCCCcceeeeecCCcHHHHhhccCcccCHHHHHHHHHhhccHHHHHHHHHhccc-cccccccccc---
Confidence 5677777877888888 25666665553 21 1 1112236788888888766542 2444 55566
Q ss_pred cccchhccccCCHhHHHhhcccccccccCCChhhHHHHHHHHhHhccCCChhhHHHhhhhhcccccCCChhhhhhhhhhh
Q psy9003 418 VDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDEC 497 (1276)
Q Consensus 418 vt~lh~a~~~~~~~~~~yli~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~~~~~~~v~~~~~a~~~~~~e~~~~lv~~~ 497 (1276)
||||.|+.+|+.|+|+-|+-. +-.+-+.|++. ||+.|-|+.=..-|-+-+|..-+
T Consensus 99 -TpLHRAaYn~h~div~~ll~~-gAn~~a~T~~G-----------------------WTPLhSAckWnN~~va~~LLqhg 153 (228)
T KOG0512|consen 99 -TPLHRAAYNGHLDIVHELLLS-GANKEAKTNEG-----------------------WTPLHSACKWNNFEVAGRLLQHG 153 (228)
T ss_pred -cHHHHHHhcCchHHHHHHHHc-cCCcccccccC-----------------------ccchhhhhcccchhHHHHHHhcc
Confidence 999999999999999887633 22334444444 78888888777777777777777
Q ss_pred hhhc
Q psy9003 498 HKAG 501 (1276)
Q Consensus 498 ~~~~ 501 (1276)
+++|
T Consensus 154 aDVn 157 (228)
T KOG0512|consen 154 ADVN 157 (228)
T ss_pred Cccc
Confidence 7766
|
|
| >PF13606 Ank_3: Ankyrin repeat | Back alignment and domain information |
|---|
Probab=82.08 E-value=0.65 Score=35.86 Aligned_cols=27 Identities=26% Similarity=0.292 Sum_probs=20.9
Q ss_pred hhhhcccccCCCHHHHHHHHhhhhhcC
Q psy9003 513 VDECHKAGLFGTPEQLKYLVDECHKAG 539 (1276)
Q Consensus 513 ~t~~~~a~~~g~~e~~~~lv~~~~~~~ 539 (1276)
.|+.+.|+..|++|++++|++.+.++|
T Consensus 3 ~T~Lh~A~~~g~~e~v~~Ll~~gadvn 29 (30)
T PF13606_consen 3 NTPLHLAASNGNIEIVKYLLEHGADVN 29 (30)
T ss_pred CCHHHHHHHhCCHHHHHHHHHcCCCCC
Confidence 467788888888888888888776665
|
|
| >PF02324 Glyco_hydro_70: Glycosyl hydrolase family 70; InterPro: IPR003318 O-Glycosyl hydrolases 3 | Back alignment and domain information |
|---|
Probab=81.29 E-value=3.8 Score=52.01 Aligned_cols=39 Identities=26% Similarity=0.377 Sum_probs=32.9
Q ss_pred CcCCCCCcHHHHHHHHHHHHHHHH---------hCCCcEEccCCcccc
Q psy9003 1094 SRLFNYSEIEVLRFLLSNLRWYLD---------EYQFDGFRFDGVTSM 1132 (1276)
Q Consensus 1094 g~~LN~~np~Vr~~Iidsl~~Wv~---------eygVDGFRfD~a~~L 1132 (1276)
.+++|-+||.|+..-+.++-|.+. +..+||||+|++..+
T Consensus 143 aNDVDNSNPvVQAEqLNwl~yLmN~GsI~~~d~daNFDgiRVDAvDNV 190 (809)
T PF02324_consen 143 ANDVDNSNPVVQAEQLNWLHYLMNFGSITANDPDANFDGIRVDAVDNV 190 (809)
T ss_dssp SEEE-TTSHHHHHHHHHHHHHHHTHHHHHHS-TTSS--EEEETTGGGS
T ss_pred eccccCCCchhhHHHHHHHHHHhhccccccCCCCCCcccEEeeccccc
Confidence 588999999999999999999887 778999999998877
|
2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glucosyltransferases or sucrose 6-glycosyl transferases (GTF-S) (2.4.1.5 from EC, GH70 from CAZY) catalyse the transfer of D-glucopyramnosyl units from sucrose onto acceptor molecules []. This signature roughly corresponds to the N-terminal catalytic domain of the enzyme. Members of this group also contain the putative cell wall binding repeat (IPR002479 from INTERPRO).; GO: 0009250 glucan biosynthetic process; PDB: 3AIE_G 3AIB_D 3AIC_E 3TTQ_A 3TTO_D 3KLL_A 3KLK_A 3HZ3_A. |
| >cd05808 CBM20_alpha_amylase Alpha-amylase, C-terminal CBM20 (carbohydrate-binding module, family 20) domain | Back alignment and domain information |
|---|
Probab=80.76 E-value=5.2 Score=38.13 Aligned_cols=62 Identities=15% Similarity=0.283 Sum_probs=40.5
Q ss_pred eEEEEEcc--CCcEEEEEc---cCCCCccc-cccceecCCCeEEEEcCCCCCCCcccCcccEEEEEEEEeCCee
Q psy9003 782 CHKAGLLC--FMHVVCAAG---DFNNWNRE-EFAYKKLDFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHGHL 849 (1276)
Q Consensus 782 a~FalwAP--~A~~VsLvG---DFN~wd~~-~~pM~r~~~GVWsl~Ip~~~~G~~~i~hGs~YkYrV~~~dG~~ 849 (1276)
++|.+-.. ..++|.|+| ++++|++. .++|...+.+.|++.+.-. .+ ....|+|.+...+|..
T Consensus 3 v~F~v~~~t~~ge~l~v~G~~~~lG~W~~~~a~~l~~~~~~~W~~~v~l~-~~-----~~~eYKy~~~~~~~~~ 70 (95)
T cd05808 3 VTFNVTATTVWGQNVYVVGNVPELGNWSPANAVALSAATYPVWSGTVDLP-AG-----TAIEYKYIKKDGSGTV 70 (95)
T ss_pred EEEEEEEECCCCCEEEEEeCcHHhCCCChhhCccCCCCCCCCEEEEEEeC-CC-----CeEEEEEEEECCCCcE
Confidence 34555443 457889998 47899864 5799877889998877522 12 1267888765444443
|
This domain is found in several bacterial and fungal alpha-amylases including the maltopentaose-forming amylases (G5-amylases). Most alpha-amylases have, in addition to the C-terminal CBM20 domain, an N-terminal catalytic domain belonging to glycosyl hydrolase family 13, which hydrolyzes internal alpha-1,4-glucosidic bonds in starch and related saccharides, yielding maltotriose and maltose. Two types of soluble substrates are used by alpha-amylases including long substrates (e.g. amylose) and short substrates (e.g. maltodextrins or maltooligosaccharides). The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. lafo |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 1276 | ||||
| 3aml_A | 755 | Structure Of The Starch Branching Enzyme I (Bei) Fr | 1e-65 | ||
| 3aml_A | 755 | Structure Of The Starch Branching Enzyme I (Bei) Fr | 1e-07 | ||
| 3amk_A | 702 | Structure Of The Starch Branching Enzyme I (Bei) Fr | 1e-65 | ||
| 3amk_A | 702 | Structure Of The Starch Branching Enzyme I (Bei) Fr | 1e-07 | ||
| 3k1d_A | 722 | Crystal Structure Of Glycogen Branching Enzyme Syno | 5e-22 | ||
| 1m7x_A | 617 | The X-Ray Crystallographic Structure Of Branching E | 4e-21 | ||
| 1eha_A | 558 | Crystal Structure Of Glycosyltrehalose Trehalohydro | 7e-08 | ||
| 3vgg_A | 558 | Crystal Structure Of Glycosyltrehalose Trehalohydro | 7e-08 | ||
| 1eh9_A | 558 | Crystal Structure Of Sulfolobus Solfataricus Glycos | 7e-08 | ||
| 3vgd_A | 558 | Ctystal Structure Of Glycosyltrehalose Trehalohydro | 2e-07 | ||
| 3vge_A | 558 | Crystal Structure Of Glycosyltrehalose Trehalohydro | 3e-07 | ||
| 2bhu_A | 602 | Crystal Structure Of Deinococcus Radiodurans Maltoo | 6e-07 | ||
| 2bhy_A | 602 | Crystal Structure Of Deinococcus Radiodurans Maltoo | 2e-06 | ||
| 2vnc_A | 718 | Crystal Structure Of Glycogen Debranching Enzyme Tr | 5e-06 | ||
| 4gkl_A | 422 | Crystal Structure Of A Noncanonic Maltogenic Alpha- | 1e-05 | ||
| 2ya0_A | 714 | Catalytic Module Of The Multi-Modular Glycogen-Degr | 5e-05 | ||
| 2ya2_A | 708 | Catalytic Module Of The Multi-Modular Glycogen-Degr | 5e-05 | ||
| 2ya1_A | 1014 | Product Complex Of A Multi-Modular Glycogen-Degradi | 5e-05 | ||
| 1j0h_A | 588 | Crystal Structure Of Bacillus Stearothermophilus Ne | 9e-05 | ||
| 1j0j_A | 588 | Crystal Structure Of Neopullulanase E357q Complex W | 1e-04 | ||
| 3faw_A | 877 | Crystal Structure Of The Group B Streptococcus Pull | 1e-04 | ||
| 3m07_A | 618 | 1.4 Angstrom Resolution Crystal Structure Of Putati | 2e-04 | ||
| 1sma_A | 588 | Crystal Structure Of A Maltogenic Amylase Length = | 5e-04 | ||
| 1gvi_A | 588 | Thermus Maltogenic Amylase In Complex With Beta-Cd | 5e-04 |
| >pdb|3AML|A Chain A, Structure Of The Starch Branching Enzyme I (Bei) From Oryza Sativa L Length = 755 | Back alignment and structure |
|
| >pdb|3AML|A Chain A, Structure Of The Starch Branching Enzyme I (Bei) From Oryza Sativa L Length = 755 | Back alignment and structure |
|
| >pdb|3AMK|A Chain A, Structure Of The Starch Branching Enzyme I (Bei) From Oryza Sativa L Length = 702 | Back alignment and structure |
|
| >pdb|3AMK|A Chain A, Structure Of The Starch Branching Enzyme I (Bei) From Oryza Sativa L Length = 702 | Back alignment and structure |
|
| >pdb|3K1D|A Chain A, Crystal Structure Of Glycogen Branching Enzyme Synonym: 1,4- Glucan:1,4-Alpha-D-Glucan 6-Glucosyl-Transferase From Mycob Tuberculosis H37rv Length = 722 | Back alignment and structure |
|
| >pdb|1M7X|A Chain A, The X-Ray Crystallographic Structure Of Branching Enzyme Length = 617 | Back alignment and structure |
|
| >pdb|1EHA|A Chain A, Crystal Structure Of Glycosyltrehalose Trehalohydrolase From Sulfolobus Solfataricus Length = 558 | Back alignment and structure |
|
| >pdb|3VGG|A Chain A, Crystal Structure Of Glycosyltrehalose Trehalohydrolase (E283q) Complexed With Maltoheptaose Length = 558 | Back alignment and structure |
|
| >pdb|1EH9|A Chain A, Crystal Structure Of Sulfolobus Solfataricus Glycosyltrehalose Trehalohydrolase Length = 558 | Back alignment and structure |
|
| >pdb|3VGD|A Chain A, Ctystal Structure Of Glycosyltrehalose Trehalohydrolase (D252e) Length = 558 | Back alignment and structure |
|
| >pdb|3VGE|A Chain A, Crystal Structure Of Glycosyltrehalose Trehalohydrolase (D252s) Length = 558 | Back alignment and structure |
|
| >pdb|2BHU|A Chain A, Crystal Structure Of Deinococcus Radiodurans Maltooligosyltrehalose Trehalohydrolase Length = 602 | Back alignment and structure |
|
| >pdb|2BHY|A Chain A, Crystal Structure Of Deinococcus Radiodurans Maltooligosyltrehalose Trehalohydrolase In Complex With Trehalose Length = 602 | Back alignment and structure |
|
| >pdb|2VNC|A Chain A, Crystal Structure Of Glycogen Debranching Enzyme Trex From Sulfolobus Solfataricus Length = 718 | Back alignment and structure |
|
| >pdb|4GKL|A Chain A, Crystal Structure Of A Noncanonic Maltogenic Alpha-amylase Amyb From Thermotoga Neapolitana Length = 422 | Back alignment and structure |
|
| >pdb|2YA0|A Chain A, Catalytic Module Of The Multi-Modular Glycogen-Degrading Pneumococcal Virulence Factor Spua Length = 714 | Back alignment and structure |
|
| >pdb|2YA2|A Chain A, Catalytic Module Of The Multi-Modular Glycogen-Degrading Pneumococcal Virulence Factor Spua In Complex With An Inhibitor Length = 708 | Back alignment and structure |
|
| >pdb|2YA1|A Chain A, Product Complex Of A Multi-Modular Glycogen-Degrading Pneumococcal Virulence Factor Spua Length = 1014 | Back alignment and structure |
|
| >pdb|1J0H|A Chain A, Crystal Structure Of Bacillus Stearothermophilus Neopullulanase Length = 588 | Back alignment and structure |
|
| >pdb|1J0J|A Chain A, Crystal Structure Of Neopullulanase E357q Complex With Maltotetraose Length = 588 | Back alignment and structure |
|
| >pdb|3FAW|A Chain A, Crystal Structure Of The Group B Streptococcus Pullulanase Sap Length = 877 | Back alignment and structure |
|
| >pdb|3M07|A Chain A, 1.4 Angstrom Resolution Crystal Structure Of Putative Alpha Amylase From Salmonella Typhimurium Length = 618 | Back alignment and structure |
|
| >pdb|1SMA|A Chain A, Crystal Structure Of A Maltogenic Amylase Length = 588 | Back alignment and structure |
|
| >pdb|1GVI|A Chain A, Thermus Maltogenic Amylase In Complex With Beta-Cd Length = 588 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3aml_A OS06G0726400 protein; starch-branching, transferase; HET: EPE; 1.70A {Oryza sativa japonica group} PDB: 3amk_A Length = 755 | Back alignment and structure |
|---|
Score = 320 bits (823), Expect = 9e-95
Identities = 114/176 (64%), Positives = 135/176 (76%), Gaps = 3/176 (1%)
Query: 1033 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFD---GTQACFFHDGPRGTH 1089
GTPE LKYLVD+ H GL VL+DVVHSHAS NV DGLN +D T +FH G RG H
Sbjct: 247 SGTPEDLKYLVDKAHSLGLRVLMDVVHSHASNNVTDGLNGYDVGQNTHESYFHTGDRGYH 306
Query: 1090 PLWDSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDE 1149
LWDSRLFNY+ EVLRFLLSNLR+++DE+ FDGFRFDGVTSMLYH+HG +GF+G+Y E
Sbjct: 307 KLWDSRLFNYANWEVLRFLLSNLRYWMDEFMFDGFRFDGVTSMLYHHHGINKGFTGNYKE 366
Query: 1150 YFGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDYRL 1205
YF L+ D DA++Y+M+AN +H PE +AEDVSGMP CRPV EGG GFD+RL
Sbjct: 367 YFSLDTDVDAIVYMMLANHLMHKLLPEATIVAEDVSGMPVLCRPVDEGGVGFDFRL 422
|
| >3aml_A OS06G0726400 protein; starch-branching, transferase; HET: EPE; 1.70A {Oryza sativa japonica group} PDB: 3amk_A Length = 755 | Back alignment and structure |
|---|
Score = 144 bits (366), Expect = 2e-35
Identities = 46/143 (32%), Positives = 73/143 (51%), Gaps = 8/143 (5%)
Query: 798 GDFNNWNREEFAYKKLDFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHGHLLDRLSPWA 857
G+FNNWN + +K FG W + + +G + H S+VK R+ G +DR+ W
Sbjct: 83 GEFNNWNGAKHKMEKDKFGIWSIKISH-VNGKPAIPHNSKVKFRFRHGGGAWVDRIPAWI 141
Query: 858 TYVTEPP-VVGHAYEQRIWNPKPQDKHKWTSSKPKKPDNLKIYESHVGICTQEQKCASYE 916
Y T G Y+ W+P +++ + +P KPD +IYE+HVG+ +E + ++Y
Sbjct: 142 RYATFDASKFGAPYDGVHWDPPACERYVFKHPRPPKPDAPRIYEAHVGMSGEEPEVSTYR 201
Query: 917 DFVRVVIPRIVKQG------MAI 933
+F V+PRI MAI
Sbjct: 202 EFADNVLPRIRANNYNTVQLMAI 224
|
| >3aml_A OS06G0726400 protein; starch-branching, transferase; HET: EPE; 1.70A {Oryza sativa japonica group} PDB: 3amk_A Length = 755 | Back alignment and structure |
|---|
Score = 136 bits (344), Expect = 8e-33
Identities = 53/83 (63%), Positives = 62/83 (74%)
Query: 928 KQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAESHDQALVGDKTIAFW 987
+ MAIPD+WI+ LK +D W+M IV TLTNRRY EK +AYAESHDQ++VGDKTIAF
Sbjct: 421 RLAMAIPDRWIDYLKNKEDRKWSMSEIVQTLTNRRYTEKCIAYAESHDQSIVGDKTIAFL 480
Query: 988 LMDKEMYTHMSTLSDPSLIIDRA 1010
LMDKEMYT MS L S I+R
Sbjct: 481 LMDKEMYTGMSDLQPASPTINRG 503
|
| >3aml_A OS06G0726400 protein; starch-branching, transferase; HET: EPE; 1.70A {Oryza sativa japonica group} PDB: 3amk_A Length = 755 | Back alignment and structure |
|---|
Score = 86.7 bits (215), Expect = 2e-17
Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Query: 15 PELHKLLERDPYLNPYQYEMKRRYGLMVNFLEQFEKHEGGIEKFTTSYNKYGIHVQADNS 74
+ + + DP L ++ R ++ EKHEGG+E+F+ Y K+GI+ D +
Sbjct: 8 VDHLPIYDLDPKLEEFKDHFNYRIKRYLDQKCLIEKHEGGLEEFSKGYLKFGINTV-DGA 66
Query: 75 VRCFEWAPSAQQLYLTGN 92
EWAP+AQ+ L G
Sbjct: 67 TIYREWAPAAQEAQLIGE 84
|
| >3aml_A OS06G0726400 protein; starch-branching, transferase; HET: EPE; 1.70A {Oryza sativa japonica group} PDB: 3amk_A Length = 755 | Back alignment and structure |
|---|
Score = 77.4 bits (191), Expect = 2e-14
Identities = 26/55 (47%), Positives = 36/55 (65%)
Query: 1217 FDAAMNTTEERFKWLSADPGYVSTKHEGDKVIIFERAGLLFAFNFNGTQSFTDYR 1271
FD AMN EE F +LS+ VS +E DKVI+FER L+F FNF+ +++ Y+
Sbjct: 570 FDQAMNALEEEFSFLSSSKQIVSDMNEKDKVIVFERGDLVFVFNFHPNKTYKGYK 624
|
| >3aml_A OS06G0726400 protein; starch-branching, transferase; HET: EPE; 1.70A {Oryza sativa japonica group} PDB: 3amk_A Length = 755 | Back alignment and structure |
|---|
Score = 45.5 bits (108), Expect = 1e-04
Identities = 16/26 (61%), Positives = 17/26 (65%)
Query: 769 FGTPEQLKYLVDECHKAGLLCFMHVV 794
GTPE LKYLVD+ H GL M VV
Sbjct: 247 SGTPEDLKYLVDKAHSLGLRVLMDVV 272
|
| >3aml_A OS06G0726400 protein; starch-branching, transferase; HET: EPE; 1.70A {Oryza sativa japonica group} PDB: 3amk_A Length = 755 | Back alignment and structure |
|---|
Score = 42.8 bits (101), Expect = 8e-04
Identities = 13/20 (65%), Positives = 14/20 (70%)
Query: 123 FGTPEQLKYLVDECHKAGLF 142
GTPE LKYLVD+ H GL
Sbjct: 247 SGTPEDLKYLVDKAHSLGLR 266
|
| >3aml_A OS06G0726400 protein; starch-branching, transferase; HET: EPE; 1.70A {Oryza sativa japonica group} PDB: 3amk_A Length = 755 | Back alignment and structure |
|---|
Score = 42.8 bits (101), Expect = 8e-04
Identities = 13/20 (65%), Positives = 14/20 (70%)
Query: 142 FGTPEQLKYLVDECHKAGLF 161
GTPE LKYLVD+ H GL
Sbjct: 247 SGTPEDLKYLVDKAHSLGLR 266
|
| >3aml_A OS06G0726400 protein; starch-branching, transferase; HET: EPE; 1.70A {Oryza sativa japonica group} PDB: 3amk_A Length = 755 | Back alignment and structure |
|---|
Score = 42.8 bits (101), Expect = 8e-04
Identities = 13/20 (65%), Positives = 14/20 (70%)
Query: 161 FGTPEQLKYLVDECHKAGLF 180
GTPE LKYLVD+ H GL
Sbjct: 247 SGTPEDLKYLVDKAHSLGLR 266
|
| >3aml_A OS06G0726400 protein; starch-branching, transferase; HET: EPE; 1.70A {Oryza sativa japonica group} PDB: 3amk_A Length = 755 | Back alignment and structure |
|---|
Score = 42.8 bits (101), Expect = 8e-04
Identities = 13/20 (65%), Positives = 14/20 (70%)
Query: 180 FGTPEQLKYLVDECHKAGLF 199
GTPE LKYLVD+ H GL
Sbjct: 247 SGTPEDLKYLVDKAHSLGLR 266
|
| >3aml_A OS06G0726400 protein; starch-branching, transferase; HET: EPE; 1.70A {Oryza sativa japonica group} PDB: 3amk_A Length = 755 | Back alignment and structure |
|---|
Score = 42.8 bits (101), Expect = 8e-04
Identities = 13/20 (65%), Positives = 14/20 (70%)
Query: 199 FGTPEQLKYLVDECHKAGLF 218
GTPE LKYLVD+ H GL
Sbjct: 247 SGTPEDLKYLVDKAHSLGLR 266
|
| >3aml_A OS06G0726400 protein; starch-branching, transferase; HET: EPE; 1.70A {Oryza sativa japonica group} PDB: 3amk_A Length = 755 | Back alignment and structure |
|---|
Score = 42.8 bits (101), Expect = 8e-04
Identities = 13/20 (65%), Positives = 14/20 (70%)
Query: 218 FGTPEQLKYLVDECHKAGLF 237
GTPE LKYLVD+ H GL
Sbjct: 247 SGTPEDLKYLVDKAHSLGLR 266
|
| >3aml_A OS06G0726400 protein; starch-branching, transferase; HET: EPE; 1.70A {Oryza sativa japonica group} PDB: 3amk_A Length = 755 | Back alignment and structure |
|---|
Score = 42.8 bits (101), Expect = 8e-04
Identities = 13/20 (65%), Positives = 14/20 (70%)
Query: 237 FGTPEQLKYLVDECHKAGLF 256
GTPE LKYLVD+ H GL
Sbjct: 247 SGTPEDLKYLVDKAHSLGLR 266
|
| >3aml_A OS06G0726400 protein; starch-branching, transferase; HET: EPE; 1.70A {Oryza sativa japonica group} PDB: 3amk_A Length = 755 | Back alignment and structure |
|---|
Score = 42.8 bits (101), Expect = 8e-04
Identities = 13/20 (65%), Positives = 14/20 (70%)
Query: 256 FGTPEQLKYLVDECHKAGLF 275
GTPE LKYLVD+ H GL
Sbjct: 247 SGTPEDLKYLVDKAHSLGLR 266
|
| >3aml_A OS06G0726400 protein; starch-branching, transferase; HET: EPE; 1.70A {Oryza sativa japonica group} PDB: 3amk_A Length = 755 | Back alignment and structure |
|---|
Score = 42.8 bits (101), Expect = 8e-04
Identities = 13/20 (65%), Positives = 14/20 (70%)
Query: 275 FGTPEQLKYLVDECHKAGLF 294
GTPE LKYLVD+ H GL
Sbjct: 247 SGTPEDLKYLVDKAHSLGLR 266
|
| >3aml_A OS06G0726400 protein; starch-branching, transferase; HET: EPE; 1.70A {Oryza sativa japonica group} PDB: 3amk_A Length = 755 | Back alignment and structure |
|---|
Score = 42.8 bits (101), Expect = 8e-04
Identities = 13/20 (65%), Positives = 14/20 (70%)
Query: 294 FGTPEQLKYLVDECHKAGLF 313
GTPE LKYLVD+ H GL
Sbjct: 247 SGTPEDLKYLVDKAHSLGLR 266
|
| >3aml_A OS06G0726400 protein; starch-branching, transferase; HET: EPE; 1.70A {Oryza sativa japonica group} PDB: 3amk_A Length = 755 | Back alignment and structure |
|---|
Score = 42.8 bits (101), Expect = 8e-04
Identities = 13/20 (65%), Positives = 14/20 (70%)
Query: 313 FGTPEQLKYLVDECHKAGLF 332
GTPE LKYLVD+ H GL
Sbjct: 247 SGTPEDLKYLVDKAHSLGLR 266
|
| >3aml_A OS06G0726400 protein; starch-branching, transferase; HET: EPE; 1.70A {Oryza sativa japonica group} PDB: 3amk_A Length = 755 | Back alignment and structure |
|---|
Score = 42.8 bits (101), Expect = 8e-04
Identities = 13/20 (65%), Positives = 14/20 (70%)
Query: 332 FGTPEQLKYLVDECHKAGLF 351
GTPE LKYLVD+ H GL
Sbjct: 247 SGTPEDLKYLVDKAHSLGLR 266
|
| >3aml_A OS06G0726400 protein; starch-branching, transferase; HET: EPE; 1.70A {Oryza sativa japonica group} PDB: 3amk_A Length = 755 | Back alignment and structure |
|---|
Score = 42.8 bits (101), Expect = 8e-04
Identities = 13/20 (65%), Positives = 14/20 (70%)
Query: 351 FGTPEQLKYLVDECHKAGLF 370
GTPE LKYLVD+ H GL
Sbjct: 247 SGTPEDLKYLVDKAHSLGLR 266
|
| >3aml_A OS06G0726400 protein; starch-branching, transferase; HET: EPE; 1.70A {Oryza sativa japonica group} PDB: 3amk_A Length = 755 | Back alignment and structure |
|---|
Score = 42.8 bits (101), Expect = 8e-04
Identities = 13/20 (65%), Positives = 14/20 (70%)
Query: 370 FGTPEQLKYLVDECHKAGLF 389
GTPE LKYLVD+ H GL
Sbjct: 247 SGTPEDLKYLVDKAHSLGLR 266
|
| >3aml_A OS06G0726400 protein; starch-branching, transferase; HET: EPE; 1.70A {Oryza sativa japonica group} PDB: 3amk_A Length = 755 | Back alignment and structure |
|---|
Score = 42.8 bits (101), Expect = 8e-04
Identities = 13/20 (65%), Positives = 14/20 (70%)
Query: 389 FGTPEQLKYLVDECHKAGLF 408
GTPE LKYLVD+ H GL
Sbjct: 247 SGTPEDLKYLVDKAHSLGLR 266
|
| >3aml_A OS06G0726400 protein; starch-branching, transferase; HET: EPE; 1.70A {Oryza sativa japonica group} PDB: 3amk_A Length = 755 | Back alignment and structure |
|---|
Score = 42.8 bits (101), Expect = 8e-04
Identities = 13/20 (65%), Positives = 14/20 (70%)
Query: 408 FGTPEQLKYLVDECHKAGLF 427
GTPE LKYLVD+ H GL
Sbjct: 247 SGTPEDLKYLVDKAHSLGLR 266
|
| >3aml_A OS06G0726400 protein; starch-branching, transferase; HET: EPE; 1.70A {Oryza sativa japonica group} PDB: 3amk_A Length = 755 | Back alignment and structure |
|---|
Score = 42.8 bits (101), Expect = 8e-04
Identities = 13/20 (65%), Positives = 14/20 (70%)
Query: 427 FGTPEQLKYLVDECHKAGLF 446
GTPE LKYLVD+ H GL
Sbjct: 247 SGTPEDLKYLVDKAHSLGLR 266
|
| >3aml_A OS06G0726400 protein; starch-branching, transferase; HET: EPE; 1.70A {Oryza sativa japonica group} PDB: 3amk_A Length = 755 | Back alignment and structure |
|---|
Score = 42.8 bits (101), Expect = 8e-04
Identities = 13/20 (65%), Positives = 14/20 (70%)
Query: 446 FGTPEQLKYLVDECHKAGLF 465
GTPE LKYLVD+ H GL
Sbjct: 247 SGTPEDLKYLVDKAHSLGLR 266
|
| >3aml_A OS06G0726400 protein; starch-branching, transferase; HET: EPE; 1.70A {Oryza sativa japonica group} PDB: 3amk_A Length = 755 | Back alignment and structure |
|---|
Score = 42.8 bits (101), Expect = 8e-04
Identities = 13/20 (65%), Positives = 14/20 (70%)
Query: 465 FGTPEQLKYLVDECHKAGLF 484
GTPE LKYLVD+ H GL
Sbjct: 247 SGTPEDLKYLVDKAHSLGLR 266
|
| >3aml_A OS06G0726400 protein; starch-branching, transferase; HET: EPE; 1.70A {Oryza sativa japonica group} PDB: 3amk_A Length = 755 | Back alignment and structure |
|---|
Score = 42.8 bits (101), Expect = 8e-04
Identities = 13/20 (65%), Positives = 14/20 (70%)
Query: 484 FGTPEQLKYLVDECHKAGLF 503
GTPE LKYLVD+ H GL
Sbjct: 247 SGTPEDLKYLVDKAHSLGLR 266
|
| >3aml_A OS06G0726400 protein; starch-branching, transferase; HET: EPE; 1.70A {Oryza sativa japonica group} PDB: 3amk_A Length = 755 | Back alignment and structure |
|---|
Score = 42.8 bits (101), Expect = 8e-04
Identities = 13/20 (65%), Positives = 14/20 (70%)
Query: 503 FGTPEQLKYLVDECHKAGLF 522
GTPE LKYLVD+ H GL
Sbjct: 247 SGTPEDLKYLVDKAHSLGLR 266
|
| >3aml_A OS06G0726400 protein; starch-branching, transferase; HET: EPE; 1.70A {Oryza sativa japonica group} PDB: 3amk_A Length = 755 | Back alignment and structure |
|---|
Score = 42.8 bits (101), Expect = 8e-04
Identities = 13/20 (65%), Positives = 14/20 (70%)
Query: 522 FGTPEQLKYLVDECHKAGLF 541
GTPE LKYLVD+ H GL
Sbjct: 247 SGTPEDLKYLVDKAHSLGLR 266
|
| >3aml_A OS06G0726400 protein; starch-branching, transferase; HET: EPE; 1.70A {Oryza sativa japonica group} PDB: 3amk_A Length = 755 | Back alignment and structure |
|---|
Score = 42.8 bits (101), Expect = 8e-04
Identities = 13/20 (65%), Positives = 14/20 (70%)
Query: 541 FGTPEQLKYLVDECHKAGLF 560
GTPE LKYLVD+ H GL
Sbjct: 247 SGTPEDLKYLVDKAHSLGLR 266
|
| >3aml_A OS06G0726400 protein; starch-branching, transferase; HET: EPE; 1.70A {Oryza sativa japonica group} PDB: 3amk_A Length = 755 | Back alignment and structure |
|---|
Score = 42.8 bits (101), Expect = 8e-04
Identities = 13/20 (65%), Positives = 14/20 (70%)
Query: 560 FGTPEQLKYLVDECHKAGLF 579
GTPE LKYLVD+ H GL
Sbjct: 247 SGTPEDLKYLVDKAHSLGLR 266
|
| >3aml_A OS06G0726400 protein; starch-branching, transferase; HET: EPE; 1.70A {Oryza sativa japonica group} PDB: 3amk_A Length = 755 | Back alignment and structure |
|---|
Score = 42.8 bits (101), Expect = 8e-04
Identities = 13/20 (65%), Positives = 14/20 (70%)
Query: 579 FGTPEQLKYLVDECHKAGLF 598
GTPE LKYLVD+ H GL
Sbjct: 247 SGTPEDLKYLVDKAHSLGLR 266
|
| >3aml_A OS06G0726400 protein; starch-branching, transferase; HET: EPE; 1.70A {Oryza sativa japonica group} PDB: 3amk_A Length = 755 | Back alignment and structure |
|---|
Score = 42.8 bits (101), Expect = 8e-04
Identities = 13/20 (65%), Positives = 14/20 (70%)
Query: 598 FGTPEQLKYLVDECHKAGLF 617
GTPE LKYLVD+ H GL
Sbjct: 247 SGTPEDLKYLVDKAHSLGLR 266
|
| >3aml_A OS06G0726400 protein; starch-branching, transferase; HET: EPE; 1.70A {Oryza sativa japonica group} PDB: 3amk_A Length = 755 | Back alignment and structure |
|---|
Score = 42.8 bits (101), Expect = 8e-04
Identities = 13/20 (65%), Positives = 14/20 (70%)
Query: 617 FGTPEQLKYLVDECHKAGLF 636
GTPE LKYLVD+ H GL
Sbjct: 247 SGTPEDLKYLVDKAHSLGLR 266
|
| >3aml_A OS06G0726400 protein; starch-branching, transferase; HET: EPE; 1.70A {Oryza sativa japonica group} PDB: 3amk_A Length = 755 | Back alignment and structure |
|---|
Score = 42.8 bits (101), Expect = 8e-04
Identities = 13/20 (65%), Positives = 14/20 (70%)
Query: 636 FGTPEQLKYLVDECHKAGLF 655
GTPE LKYLVD+ H GL
Sbjct: 247 SGTPEDLKYLVDKAHSLGLR 266
|
| >3aml_A OS06G0726400 protein; starch-branching, transferase; HET: EPE; 1.70A {Oryza sativa japonica group} PDB: 3amk_A Length = 755 | Back alignment and structure |
|---|
Score = 42.8 bits (101), Expect = 8e-04
Identities = 13/20 (65%), Positives = 14/20 (70%)
Query: 655 FGTPEQLKYLVDECHKAGLF 674
GTPE LKYLVD+ H GL
Sbjct: 247 SGTPEDLKYLVDKAHSLGLR 266
|
| >3aml_A OS06G0726400 protein; starch-branching, transferase; HET: EPE; 1.70A {Oryza sativa japonica group} PDB: 3amk_A Length = 755 | Back alignment and structure |
|---|
Score = 42.8 bits (101), Expect = 8e-04
Identities = 13/20 (65%), Positives = 14/20 (70%)
Query: 674 FGTPEQLKYLVDECHKAGLF 693
GTPE LKYLVD+ H GL
Sbjct: 247 SGTPEDLKYLVDKAHSLGLR 266
|
| >3aml_A OS06G0726400 protein; starch-branching, transferase; HET: EPE; 1.70A {Oryza sativa japonica group} PDB: 3amk_A Length = 755 | Back alignment and structure |
|---|
Score = 42.8 bits (101), Expect = 8e-04
Identities = 13/20 (65%), Positives = 14/20 (70%)
Query: 693 FGTPEQLKYLVDECHKAGLF 712
GTPE LKYLVD+ H GL
Sbjct: 247 SGTPEDLKYLVDKAHSLGLR 266
|
| >3aml_A OS06G0726400 protein; starch-branching, transferase; HET: EPE; 1.70A {Oryza sativa japonica group} PDB: 3amk_A Length = 755 | Back alignment and structure |
|---|
Score = 42.8 bits (101), Expect = 8e-04
Identities = 13/20 (65%), Positives = 14/20 (70%)
Query: 712 FGTPEQLKYLVDECHKAGLF 731
GTPE LKYLVD+ H GL
Sbjct: 247 SGTPEDLKYLVDKAHSLGLR 266
|
| >3aml_A OS06G0726400 protein; starch-branching, transferase; HET: EPE; 1.70A {Oryza sativa japonica group} PDB: 3amk_A Length = 755 | Back alignment and structure |
|---|
Score = 42.8 bits (101), Expect = 8e-04
Identities = 13/20 (65%), Positives = 14/20 (70%)
Query: 731 FGTPEQLKYLVDECHKAGLF 750
GTPE LKYLVD+ H GL
Sbjct: 247 SGTPEDLKYLVDKAHSLGLR 266
|
| >3aml_A OS06G0726400 protein; starch-branching, transferase; HET: EPE; 1.70A {Oryza sativa japonica group} PDB: 3amk_A Length = 755 | Back alignment and structure |
|---|
Score = 42.8 bits (101), Expect = 8e-04
Identities = 13/20 (65%), Positives = 14/20 (70%)
Query: 750 FGTPEQLKYLVDECHKAGLF 769
GTPE LKYLVD+ H GL
Sbjct: 247 SGTPEDLKYLVDKAHSLGLR 266
|
| >1m7x_A 1,4-alpha-glucan branching enzyme; alpha/beta barrel, beta sandwich, transferase; 2.30A {Escherichia coli} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 3o7y_A* 3o7z_A* Length = 617 | Back alignment and structure |
|---|
Score = 154 bits (391), Expect = 5e-39
Identities = 60/176 (34%), Positives = 91/176 (51%), Gaps = 13/176 (7%)
Query: 1033 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPR-GTHPL 1091
FGT + +Y +D H AGL V+LD V H + L EFDGT + H PR G H
Sbjct: 201 FGTRDDFRYFIDAAHAAGLNVILDWVPGHFPTDD-FALAEFDGT-NLYEHSDPREGYHQD 258
Query: 1092 WDSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEY- 1150
W++ ++NY EV FL+ N ++++ + D R D V SM+Y ++ EG E+
Sbjct: 259 WNTLIYNYGRREVSNFLVGNALYWIERFGIDALRVDAVASMIYRDYSRKEG------EWI 312
Query: 1151 ---FGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDY 1203
FG + +A+ +L N+ L ++ +T+AE+ + P RP GG GF Y
Sbjct: 313 PNEFGGRENLEAIEFLRNTNRILGEQVSGAVTMAEESTDFPGVSRPQDMGGLGFWY 368
|
| >1m7x_A 1,4-alpha-glucan branching enzyme; alpha/beta barrel, beta sandwich, transferase; 2.30A {Escherichia coli} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 3o7y_A* 3o7z_A* Length = 617 | Back alignment and structure |
|---|
Score = 50.6 bits (122), Expect = 3e-06
Identities = 26/116 (22%), Positives = 42/116 (36%), Gaps = 19/116 (16%)
Query: 794 VCAAGDFNNWNREEFAYKKL-DFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHGHLLDR 852
V G FN W+ + + G WEL +P +G K + + +G+L +
Sbjct: 39 VSVVGQFNYWDGRRHPMRLRKESGIWELFIPGAHNGQL-------YKYEMIDANGNLRLK 91
Query: 853 LSPWATYVTEPPVVGHAYEQRIWNPKPQDKHKWTSSKPKKPDNLK----IYESHVG 904
P+A P A I + + + KK + IYE H+G
Sbjct: 92 SDPYAFEAQMRP--ETA--SLICGL---PEKVVQTEERKKANQFDAPISIYEVHLG 140
|
| >3k1d_A 1,4-alpha-glucan-branching enzyme; mycobacterium tuberculosis H37RV, mesophilic human pathogen, RV1326C gene, glycosyl transferase; 2.33A {Mycobacterium tuberculosis} Length = 722 | Back alignment and structure |
|---|
Score = 153 bits (390), Expect = 2e-38
Identities = 60/176 (34%), Positives = 89/176 (50%), Gaps = 13/176 (7%)
Query: 1033 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPR-GTHPL 1091
FGTP+ + LVD H+AG+ V++D V +H K+ L FDGT + H P+ G
Sbjct: 309 FGTPDDFRALVDALHQAGIGVIVDWVPAHFPKDA-WALGRFDGT-PLYEHSDPKRGEQLD 366
Query: 1092 WDSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEY- 1150
W + +F++ EV FL++N ++L E+ DG R D V SMLY ++ EG +
Sbjct: 367 WGTYVFDFGRPEVRNFLVANALYWLQEFHIDGLRVDAVASMLYLDYSRPEG------GWT 420
Query: 1151 ---FGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDY 1203
G + +A+ +L N H P I+TIAE+ + RP GG GF
Sbjct: 421 PNVHGGRENLEAVQFLQEMNATAHKVAPGIVTIAEESTPWSGVTRPTNIGGLGFSM 476
|
| >3k1d_A 1,4-alpha-glucan-branching enzyme; mycobacterium tuberculosis H37RV, mesophilic human pathogen, RV1326C gene, glycosyl transferase; 2.33A {Mycobacterium tuberculosis} Length = 722 | Back alignment and structure |
|---|
Score = 51.1 bits (123), Expect = 2e-06
Identities = 30/117 (25%), Positives = 39/117 (33%), Gaps = 18/117 (15%)
Query: 794 VCAAGDFNNWNREEFAYKKL-DFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHGHLLDR 852
V G+FN WN E + L G WEL P P K V G + DR
Sbjct: 150 VSLIGEFNGWNGHEAPMRVLGPSGVWELFWPDFPCDGL-------YKFRVHGADGVVTDR 202
Query: 853 LSPWATYVTEPP-----VVGHAYEQRIWNPKPQDKHKWTSSKPKKPDNLKIYESHVG 904
P+A PP V Y W + + + + YE H+G
Sbjct: 203 ADPFAFGTEVPPQTASRVTSSDYT---WGDDDWMAGRALRNPVNEA--MSTYEVHLG 254
|
| >2bhu_A Maltooligosyltrehalose trehalohydrolase; alpha-amylase, protein-carbohydrate complex, desiccation resistance; HET: TRS PGE; 1.1A {Deinococcus radiodurans} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 2bhy_A* 2bhz_A* 2bxy_A* 2bxz_A* 2by0_A* 2by1_A* 2by2_A* 2by3_A* Length = 602 | Back alignment and structure |
|---|
Score = 110 bits (276), Expect = 9e-25
Identities = 35/106 (33%), Positives = 49/106 (46%), Gaps = 14/106 (13%)
Query: 1033 FGTPEQLKYLVDECHKAGLYVLLDVVHSH--ASKNVLDGLNEFDGTQACFFHDGPRGTHP 1090
+G PE L LVD H+ GL V LDVV++H S N L+ + + +F D
Sbjct: 189 YGRPEDLMALVDAAHRLGLGVFLDVVYNHFGPSGN---YLSSYAPS---YFTDRF---SS 239
Query: 1091 LWDSRLFNYSEIEVLRFLLSN-LRWYLDEYQFDGFRFDGVTSMLYH 1135
W +Y+E + R++ N W L +Y FDG R D M
Sbjct: 240 AWGM-GLDYAEPHMRRYVTGNARMW-LRDYHFDGLRLDATPYMTDD 283
|
| >2bhu_A Maltooligosyltrehalose trehalohydrolase; alpha-amylase, protein-carbohydrate complex, desiccation resistance; HET: TRS PGE; 1.1A {Deinococcus radiodurans} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 2bhy_A* 2bhz_A* 2bxy_A* 2bxz_A* 2by0_A* 2by1_A* 2by2_A* 2by3_A* Length = 602 | Back alignment and structure |
|---|
Score = 43.8 bits (104), Expect = 3e-04
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 769 FGTPEQLKYLVDECHKAGLLCFMHVVCA 796
+G PE L LVD H+ GL F+ VV
Sbjct: 189 YGRPEDLMALVDAAHRLGLGVFLDVVYN 216
|
| >3m07_A Putative alpha amylase; IDP00968, csgid, structural genomics, center for structural genomics of infectious diseases, unknown function; HET: BTB PG4 PGE; 1.40A {Salmonella enterica subsp} Length = 618 | Back alignment and structure |
|---|
Score = 107 bits (270), Expect = 5e-24
Identities = 40/177 (22%), Positives = 62/177 (35%), Gaps = 39/177 (22%)
Query: 1033 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDG--LNEFDGTQACFFHDGPRGTHP 1090
+GTP+ K +D H GL V+LD+V +H +G L FFH
Sbjct: 199 YGTPDDFKAFIDAAHGYGLSVVLDIVLNHFGP---EGNYLPLLAPA---FFHKER---MT 249
Query: 1091 LWDSRLFNYSEIEVLRFLLSN-LRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDE 1149
W + Y V R+++ L W L EY DG RFD + +
Sbjct: 250 PWGN-GIAYDVDAVRRYIIEAPLYW-LTEYHLDGLRFDAIDQI----------------- 290
Query: 1150 YFGLNVDTDALIYLMVANKFLHDKYPE--IITIAEDVSGMPASCRPVTEG-GTGFDY 1203
D+ A L+ + + + + I ED + + +G F
Sbjct: 291 -----EDSSARHVLVEIAQRIREDITDRPIHLTTEDSRNIISLHPRDQDGNAPLFTA 342
|
| >3m07_A Putative alpha amylase; IDP00968, csgid, structural genomics, center for structural genomics of infectious diseases, unknown function; HET: BTB PG4 PGE; 1.40A {Salmonella enterica subsp} Length = 618 | Back alignment and structure |
|---|
Score = 43.4 bits (103), Expect = 4e-04
Identities = 9/28 (32%), Positives = 14/28 (50%)
Query: 769 FGTPEQLKYLVDECHKAGLLCFMHVVCA 796
+GTP+ K +D H GL + +V
Sbjct: 199 YGTPDDFKAFIDAAHGYGLSVVLDIVLN 226
|
| >3vgf_A Malto-oligosyltrehalose trehalohydrolase; alpha/beta barrel, alpha-amylas hydrolase; HET: GLC FLC; 2.30A {Sulfolobus solfataricus} PDB: 3vge_A* 3vgd_A* 3vgb_A* 1eh9_A* 3vgh_A* 3vgg_A* 1eha_A Length = 558 | Back alignment and structure |
|---|
Score = 101 bits (253), Expect = 4e-22
Identities = 47/175 (26%), Positives = 67/175 (38%), Gaps = 38/175 (21%)
Query: 1033 FGTPEQLKYLVDECHKAGLYVLLDVVHSH--ASKNVLDGLNEFDGTQACFFHDGPRGTHP 1090
+G PE + LVDE HK GL V+LDVV++H N + + +F + P
Sbjct: 164 YGGPEGFRKLVDEAHKKGLGVILDVVYNHVGPEGN---YMVKLGP----YFSQ--KYKTP 214
Query: 1091 LWDSRLFNYSE-IEVLRFLLSN-LRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYD 1148
+ F+ +E EV +F+L N W + EY DGFR V +++
Sbjct: 215 WGLTFNFDDAESDEVRKFILENVEYW-IKEYNVDGFRLSAVHAII--------------- 258
Query: 1149 EYFGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDY 1203
DT L +H I IAE P P + G D
Sbjct: 259 -------DTSPKHILEEIADVVHK--YNRIVIAESDLNDPRVVNPKEKCGYNIDA 304
|
| >3vgf_A Malto-oligosyltrehalose trehalohydrolase; alpha/beta barrel, alpha-amylas hydrolase; HET: GLC FLC; 2.30A {Sulfolobus solfataricus} PDB: 3vge_A* 3vgd_A* 3vgb_A* 1eh9_A* 3vgh_A* 3vgg_A* 1eha_A Length = 558 | Back alignment and structure |
|---|
Score = 43.4 bits (103), Expect = 4e-04
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 769 FGTPEQLKYLVDECHKAGLLCFMHVVCA 796
+G PE + LVDE HK GL + VV
Sbjct: 164 YGGPEGFRKLVDEAHKKGLGVILDVVYN 191
|
| >1gcy_A Glucan 1,4-alpha-maltotetrahydrolase; beta-alpha-barrel, beta sheet; 1.60A {Pseudomonas stutzeri} SCOP: b.71.1.1 c.1.8.1 PDB: 1jdc_A* 1jda_A* 1jdd_A* 1qi5_A* 1qi3_A* 1qi4_A* 2amg_A 1qpk_A* Length = 527 | Back alignment and structure |
|---|
Score = 80.1 bits (197), Expect = 2e-15
Identities = 34/199 (17%), Positives = 50/199 (25%), Gaps = 39/199 (19%)
Query: 1033 FGTPEQLKYLVDECHKAGLYVLLDVVHSH---ASKNVLDGLNEFDGTQACFFHDGPRGTH 1089
+G+ QL+ AG+ VL DVV +H + L G D +
Sbjct: 89 YGSDAQLRQAASALGGAGVKVLYDVVPNHMNRGYPDKEINLPAGQGFWRNDCADPGNYPN 148
Query: 1090 PLWDSRLF-------NYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEG 1142
D F N +V +Y GFRFD V
Sbjct: 149 DCDDGDRFIGGDADLNTGHPQVYGMFRDEFTNLRSQYGAGGFRFDFV------------- 195
Query: 1143 FSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFD 1202
Y N ++ D + E G +
Sbjct: 196 --RGYAPER--------------VNSWMTDSADNSFCVGELWKGPSEYPNWDWRNTASWQ 239
Query: 1203 YRLVSLEGSALSALFDAAM 1221
+ A +FD A+
Sbjct: 240 QIIKDWSDRAKCPVFDFAL 258
|
| >1cyg_A Cyclodextrin glucanotransferase; glycosyltransferase; 2.50A {Geobacillus stearothermophilus} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 Length = 680 | Back alignment and structure |
|---|
Score = 69.5 bits (170), Expect = 4e-12
Identities = 25/119 (21%), Positives = 43/119 (36%), Gaps = 25/119 (21%)
Query: 1033 FGTPEQLKYLVDECHKAGLYVLLDVVHSHAS------KNVLDGLNEFDG----------T 1076
FGT + LVD H G+ V++D +H S + ++ +D
Sbjct: 108 FGTLSDFQRLVDAAHAKGIKVIIDFAPNHTSPASETNPSYMENGRLYDNGTLLGGYTNDA 167
Query: 1077 QACFFHDGPRGTHPLWDSRL--------FNYSEIEVLRFLLSNLRWYLDEYQFDGFRFD 1127
F H+G L D N+ + R+L ++ ++ + DG R D
Sbjct: 168 NMYFHHNGGTTFSSLEDGIYRNLFDLADLNHQNPVIDRYLKDAVKMWI-DMGIDGIRMD 225
|
| >2guy_A Alpha-amylase A; (beta-alpha) 8 barrel, hydrolase; HET: NAG BMA; 1.59A {Aspergillus oryzae} SCOP: b.71.1.1 c.1.8.1 PDB: 2gvy_A* 3kwx_A* 6taa_A 7taa_A* 2taa_A Length = 478 | Back alignment and structure |
|---|
Score = 68.5 bits (168), Expect = 6e-12
Identities = 22/113 (19%), Positives = 40/113 (35%), Gaps = 18/113 (15%)
Query: 1033 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKN----VLDGLNEFDGTQACFFH------ 1082
+GT + LK L H+ G+Y+++DVV +H + +D + +FH
Sbjct: 94 YGTADDLKALSSALHERGMYLMVDVVANHMGYDGAGSSVDYSVFKPFSSQDYFHPFCFIQ 153
Query: 1083 ---DGPRGTHPLWDSRL-----FNYSEIEVLRFLLSNLRWYLDEYQFDGFRFD 1127
D + + ++ V + + Y DG R D
Sbjct: 154 NYEDQTQVEDCWLGDNTVSLPDLDTTKDVVKNEWYDWVGSLVSNYSIDGLRID 206
|
| >1ht6_A AMY1, alpha-amylase isozyme 1; barley, beta-alpha-barrel, hydrolase; 1.50A {Hordeum vulgare} SCOP: b.71.1.1 c.1.8.1 PDB: 1p6w_A* 1rpk_A* 3bsg_A 2qpu_A* 1rp8_A* 1rp9_A* 2qps_A 3bsh_A* 1ava_A 1amy_A 1bg9_A* Length = 405 | Back alignment and structure |
|---|
Score = 67.8 bits (166), Expect = 8e-12
Identities = 24/129 (18%), Positives = 42/129 (32%), Gaps = 25/129 (19%)
Query: 1022 YLVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHAS---KNVLDGLNEFDGTQA 1078
Y +D +G +LK L+ H G+ + D+V +H K+ F+G +
Sbjct: 58 YDIDASK----YGNAAELKSLIGALHGKGVQAIADIVINHRCADYKDSRGIYCIFEGGTS 113
Query: 1079 ---------CFFHDGPRGTHPLWDSRLF---------NYSEIEVLRFLLSNLRWYLDEYQ 1120
D + + + ++ V R L L W +
Sbjct: 114 DGRLDWGPHMICRDDTKYSDGTANLDTGADFAAAPDIDHLNDRVQRELKEWLLWLKSDLG 173
Query: 1121 FDGFRFDGV 1129
FD +R D
Sbjct: 174 FDAWRLDFA 182
|
| >3bmv_A Cyclomaltodextrin glucanotransferase; glycosidase, thermostable, family 13 glycosyl hydrolas; 1.60A {Thermoanaerobacterium thermosulfurigenorganism_taxid} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 PDB: 3bmw_A* 1ciu_A 1a47_A 1pj9_A* 1cgt_A Length = 683 | Back alignment and structure |
|---|
Score = 68.3 bits (167), Expect = 1e-11
Identities = 19/119 (15%), Positives = 39/119 (32%), Gaps = 25/119 (21%)
Query: 1033 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVL---------------DGLNEFDGTQ 1077
FG+ + L++ H + V++D +H S L +
Sbjct: 113 FGSFTDFQNLINTAHAHNIKVIIDFAPNHTSPASETDPTYAENGRLYDNGTLLGGYTNDT 172
Query: 1078 ACFFHDGPRGTHPLWDSRLF---------NYSEIEVLRFLLSNLRWYLDEYQFDGFRFD 1127
+FH ++ ++ N + +L S ++ +L + DG R D
Sbjct: 173 NGYFHHYGGTDFSSYEDGIYRNLFDLADLNQQNSTIDSYLKSAIKVWL-DMGIDGIRLD 230
|
| >2aaa_A Alpha-amylase; glycosidase; 2.10A {Aspergillus niger} SCOP: b.71.1.1 c.1.8.1 Length = 484 | Back alignment and structure |
|---|
Score = 67.5 bits (165), Expect = 1e-11
Identities = 27/115 (23%), Positives = 40/115 (34%), Gaps = 22/115 (19%)
Query: 1033 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKN----VLDGLNEFDGTQACFFHDGPRGT 1088
FGT + LK L D H G+Y+++DVV H +D + +FH P
Sbjct: 94 FGTADNLKSLSDALHARGMYLMVDVVPDHMGYAGNGNDVDYSVFDPFDSSSYFH--PYCL 151
Query: 1089 HPLWDSRL----------------FNYSEIEVLRFLLSNLRWYLDEYQFDGFRFD 1127
WD+ + +E V + + Y DG R D
Sbjct: 152 ITDWDNLTMVEDCWEGDTIVSLPDLDTTETAVRTIWYDWVADLVSNYSVDGLRID 206
|
| >1d3c_A Cyclodextrin glycosyltransferase; alpha-amylase, product complex, oligosaccharide, family 13 glycosyl hydrolase, transglycosylation; HET: GLC; 1.78A {Bacillus circulans} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 PDB: 1cxf_A* 1cxk_A* 1cdg_A* 1cxe_A* 1cxh_A* 1cxi_A* 2cxg_A* 1cgv_A* 2dij_A* 1cgy_A* 1kck_A* 1cgx_A* 1cxl_A* 1cgw_A* 1tcm_A 1kcl_A* 1eo5_A* 1eo7_A* 1dtu_A* 1ot1_A* ... Length = 686 | Back alignment and structure |
|---|
Score = 67.2 bits (164), Expect = 2e-11
Identities = 19/119 (15%), Positives = 39/119 (32%), Gaps = 25/119 (21%)
Query: 1033 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLD---------------GLNEFDGTQ 1077
+GT + L+ H + V++D +H S D L +
Sbjct: 112 YGTIADFQNLIAAAHAKNIKVIIDFAPNHTSPASSDQPSFAENGRLYDNGTLLGGYTNDT 171
Query: 1078 ACFFHDGPRGTHPLWDSRLF---------NYSEIEVLRFLLSNLRWYLDEYQFDGFRFD 1127
FH ++ ++ N++ V +L ++ +L + DG R +
Sbjct: 172 QNLFHHNGGTDFSTTENGIYKNLYDLADLNHNNSTVDVYLKDAIKMWL-DLGIDGIRMN 229
|
| >1mxg_A Alpha amylase; hyperthermostable, family 13 glycosyl hydrola (beta/alpha)8-barrel, hydrolase; HET: ACR ETE; 1.60A {Pyrococcus woesei} SCOP: b.71.1.1 c.1.8.1 PDB: 1mwo_A* 1mxd_A* 3qgv_A* Length = 435 | Back alignment and structure |
|---|
Score = 66.4 bits (162), Expect = 3e-11
Identities = 29/144 (20%), Positives = 47/144 (32%), Gaps = 28/144 (19%)
Query: 1033 FGTPEQLKYLVDECHKAGLYVLLDVVHSH---ASKNVLDGLNEFDGTQACFFHDGPRGTH 1089
FG+ E+L L+ H G+ V+ DVV +H + ++ T G +
Sbjct: 83 FGSKEELVRLIQTAHAYGIKVIADVVINHRAGGDLEWNPFVGDYTWTDFSKVASGKYTAN 142
Query: 1090 PL---------WDSRLF------NYSEIEVLRFLLSNLRW---YLDEYQFDGFRFDGVTS 1131
L D F + + +L + YL FDG+RFD V
Sbjct: 143 YLDFHPNELHCCDEGTFGGFPDICHHKEWDQYWLWKSNESYAAYLRSIGFDGWRFDYVKG 202
Query: 1132 MLYHNHGCGEGFSGHYDEYFGLNV 1155
G + ++G
Sbjct: 203 Y-------GAWVVRDWLNWWGGWA 219
|
| >1j0h_A Neopullulanase; beta-alpha-barrels, hydrolase; 1.90A {Geobacillus stearothermophilus} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 1j0i_A* 1j0j_A* 1j0k_A* 1sma_A 1gvi_A* Length = 588 | Back alignment and structure |
|---|
Score = 65.5 bits (160), Expect = 7e-11
Identities = 36/130 (27%), Positives = 56/130 (43%), Gaps = 21/130 (16%)
Query: 1022 YLVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKN---VLDGLNEFDGTQA 1078
+ VD FG E LK L+D CH+ G+ V+LD V +H D + ++
Sbjct: 213 FEVDP-----HFGDKETLKTLIDRCHEKGIRVMLDAVFNHCGYEFAPFQDVWKNGESSKY 267
Query: 1079 C---FFHDGPRGTHPLWDSRLF---------NYSEIEVLRFLLSNLRWYLDEYQFDGFRF 1126
H+ P T P + F N + EV R+LL +++ E+ DG+R
Sbjct: 268 KDWFHIHEFPLQTEPRPNYDTFAFVPQMPKLNTANPEVKRYLLDVATYWIREFDIDGWRL 327
Query: 1127 DGVTSMLYHN 1136
D V + + H
Sbjct: 328 D-VANEIDHE 336
|
| >3dhu_A Alpha-amylase; structural genomics, hydrolase, glycosidase, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum} Length = 449 | Back alignment and structure |
|---|
Score = 64.3 bits (157), Expect = 1e-10
Identities = 40/195 (20%), Positives = 69/195 (35%), Gaps = 46/195 (23%)
Query: 1033 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFH---DGPRGTH 1089
+GT K L D H+ G+ V+LD+V++H S + + +F+ DG
Sbjct: 80 YGTLADFKALTDRAHELGMKVMLDIVYNHTSPD-----SVLATEHPEWFYHDADGQLTNK 134
Query: 1090 PLWDSRL--FNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHY 1147
S + +Y E+ ++ + L ++ DG+R D
Sbjct: 135 VGDWSDVKDLDYGHHELWQYQIDTLLYWSQF--VDGYRCD------VAPL---------- 176
Query: 1148 DEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDYRLVS 1207
V D + + A K ++ KYPE + +AE ++ E
Sbjct: 177 -------VPLD---FWLEARKQVNAKYPETLWLAE------SAGSGFIE--ELRSQGYTG 218
Query: 1208 LEGSALSALFDAAMN 1222
L S L FD +
Sbjct: 219 LSDSELYQAFDMTYD 233
|
| >1ua7_A Alpha-amylase; beta-alpha-barrels, acarbose, greek-KEY motif, hydrolase; HET: ACI GLD GLC G6D BGC; 2.21A {Bacillus subtilis} SCOP: b.71.1.1 c.1.8.1 PDB: 1bag_A* 3dc0_A Length = 422 | Back alignment and structure |
|---|
Score = 63.7 bits (155), Expect = 2e-10
Identities = 23/112 (20%), Positives = 41/112 (36%), Gaps = 16/112 (14%)
Query: 1033 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGP------- 1085
GT ++ K + + G+ V++D V +H + + NE +
Sbjct: 71 LGTEQEFKEMCAAAEEYGIKVIVDAVINHTTFDYAAISNEVKSIPNWTHGNTQIKNWSDR 130
Query: 1086 -----RGTHPLWDSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSM 1132
L+D +N +V +L L L++ DGFRFD +
Sbjct: 131 WDVTQNSLLGLYD---WNTQNTQVQSYLKRFLERALNDG-ADGFRFDAAKHI 178
|
| >1qho_A Alpha-amylase; glycoside hydrolase, starch degradation; HET: MAL ABD; 1.70A {Geobacillus stearothermophilus} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 PDB: 1qhp_A* Length = 686 | Back alignment and structure |
|---|
Score = 64.5 bits (157), Expect = 2e-10
Identities = 23/126 (18%), Positives = 40/126 (31%), Gaps = 32/126 (25%)
Query: 1033 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVL--------DGLNEFDGTQACFFHDG 1084
FG LV++ H+ G+ V++D V +H++ L +F D
Sbjct: 104 FGNWTTFDTLVNDAHQNGIKVIVDFVPNHSTPFKANDSTFAEGGALYNNGTYMGNYFDDA 163
Query: 1085 PRGT-HPL-----WDSRL-----------------FNYSEIEVLRFLLSNLRWYLDEYQF 1121
+G H WD R + + ++L + +
Sbjct: 164 TKGYFHHNGDISNWDDRYEAQWKNFTDPAGFSLADLSQENGTIAQYLTDAAVQLV-AHGA 222
Query: 1122 DGFRFD 1127
DG R D
Sbjct: 223 DGLRID 228
|
| >1ea9_C Cyclomaltodextrinase; hydrolase, glycosidase; 3.2A {Bacillus SP} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 Length = 583 | Back alignment and structure |
|---|
Score = 62.4 bits (152), Expect = 6e-10
Identities = 33/131 (25%), Positives = 52/131 (39%), Gaps = 22/131 (16%)
Query: 1022 YLVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKN---VLDGL-NEFDGTQ 1077
+ +D FG + LK LVD CH+ G+ VLLD V +H+ + +D L N
Sbjct: 209 FQIDP-----QFGDKDTLKKLVDLCHERGIRVLLDAVFNHSGRTFPPFVDVLKNGEKSKY 263
Query: 1078 ACFFHDGPRGTHPLWDSRL------------FNYSEIEVLRFLLSNLRWYLDEYQFDGFR 1125
+FH + N +V +LL +++ E DG+R
Sbjct: 264 KDWFHIRSLPLEVVDGIPTYDTFAFEPLMPKLNTEHPDVKEYLLKAAEYWIRETGIDGWR 323
Query: 1126 FDGVTSMLYHN 1136
D V + + H
Sbjct: 324 LD-VANEVSHQ 333
|
| >1wzl_A Alpha-amylase II; pullulan, GH-13, alpha-amylase family, hydrolase; 2.00A {Thermoactinomyces vulgaris} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 1ji2_A 1bvz_A 1vfk_A* 3a6o_A* 1wzm_A 1jf6_A 1wzk_A 2d2o_A* 1jib_A* 1jl8_A* 1vb9_A* 1g1y_A* 1vfo_A* 1vfm_A* 1vfu_A* 1jf5_A Length = 585 | Back alignment and structure |
|---|
Score = 61.6 bits (150), Expect = 1e-09
Identities = 30/120 (25%), Positives = 48/120 (40%), Gaps = 18/120 (15%)
Query: 1033 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKN---VLDGLNEFDGTQAC---FFHDGPR 1086
FG + LVDE H+ G+ ++LD V +HA D L + + ++ F D P
Sbjct: 216 FGDLPTFRRLVDEAHRRGIKIILDAVFNHAGDQFFAFRDVLQKGEQSRYKDWFFIEDFPV 275
Query: 1087 GTHPLWDSRLF----------NYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHN 1136
+ F EV +L R+++ E DG+R D V + + H
Sbjct: 276 SKTSRTNYETFAVQVPAMPKLRTENPEVKEYLFDVARFWM-EQGIDGWRLD-VANEVDHA 333
|
| >3edf_A FSPCMD, cyclomaltodextrinase; alpha-cyclodextrin complex, glycosidase, hydrolase; HET: CE6 ACX; 1.65A {Flavobacterium SP} PDB: 3edj_A* 3edk_A* 3ede_A 3edd_A* 1h3g_A Length = 601 | Back alignment and structure |
|---|
Score = 61.4 bits (149), Expect = 1e-09
Identities = 25/128 (19%), Positives = 42/128 (32%), Gaps = 27/128 (21%)
Query: 1022 YLVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHAS------KNVL--DGLNEF 1073
Y +D +G+ E L E K G+ ++ DVV SH K++ D +N
Sbjct: 189 YRIDP-----RYGSNEDFVRLSTEARKRGMGLIQDVVLSHIGKHHWWMKDLPTPDWINYG 243
Query: 1074 DGTQACFFHDGPRGTHPLWDSRLFNY--------------SEIEVLRFLLSNLRWYLDEY 1119
H + N+ + V +L+ N W+++
Sbjct: 244 GKFVPTQHHRVAVQDPYAAQADSENFTKGWFVEGMPDLNQTNPLVANYLIQNNIWWIEYA 303
Query: 1120 QFDGFRFD 1127
G R D
Sbjct: 304 GLSGLRID 311
|
| >2wc7_A Alpha amylase, catalytic region; CD/PUL-hydrolyzing enzymes, hydrolase, glycosidase, neopullu; 2.37A {Nostoc punctiforme} PDB: 2wcs_A 2wkg_A Length = 488 | Back alignment and structure |
|---|
Score = 60.4 bits (147), Expect = 2e-09
Identities = 29/124 (23%), Positives = 47/124 (37%), Gaps = 24/124 (19%)
Query: 1022 YLVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKN---VLDGL-NEFDGTQ 1077
Y VD + G E K L+D H+ + V+LD V +H+S+ D L N
Sbjct: 93 YQVDP-----MLGGNEAFKELLDAAHQRNIKVVLDGVFNHSSRGFFFFHDVLENGPHSPW 147
Query: 1078 ACFFHDGPRGTHPLWDSRL--------------FNYSEIEVLRFLLSNLRWYLDEYQFDG 1123
+F P FN+ EV +++ ++L ++ DG
Sbjct: 148 VNWFKIEGWPLSPYNGEFPANYVGWAGNRALPEFNHDNPEVREYIMEIAEYWL-KFGIDG 206
Query: 1124 FRFD 1127
+R D
Sbjct: 207 WRLD 210
|
| >1bf2_A Isoamylase; hydrolase, glycosidase, debranching enzyme; 2.00A {Pseudomonas amyloderamosa} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 Length = 750 | Back alignment and structure |
|---|
Score = 59.3 bits (144), Expect = 7e-09
Identities = 20/106 (18%), Positives = 38/106 (35%), Gaps = 22/106 (20%)
Query: 1039 LKYLVDECHKAGLYVLLDVVHSH-ASKNVLDGLNEFDGTQACFFHDGPRG-------THP 1090
+ +V H AG+ V +DVV++H A + T + RG
Sbjct: 275 FQAMVQAFHNAGIKVYMDVVYNHTAEGGTWTSSDPTTATIYSW-----RGLDNATYYELT 329
Query: 1091 LWDSRLFNYS---------EIEVLRFLLSNLRWYLDEYQFDGFRFD 1127
+ ++ + ++ +L ++ + DGFRFD
Sbjct: 330 SGNQYFYDNTGIGANFNTYNTVAQNLIVDSLAYWANTMGVDGFRFD 375
|
| >2z1k_A (NEO)pullulanase; hydrolase, structural genomics, NPPSFA, national project on structural and functional analyses; HET: GLC; 2.30A {Thermus thermophilus} Length = 475 | Back alignment and structure |
|---|
Score = 58.1 bits (141), Expect = 1e-08
Identities = 22/122 (18%), Positives = 44/122 (36%), Gaps = 22/122 (18%)
Query: 1022 YLVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKN---VLDGL-NEFDGTQ 1077
+ VD + G E L++L++ H G+ V+LD V +H + + N
Sbjct: 87 FQVDP-----ILGGNEALRHLLEVAHAHGVRVILDGVFNHTGRGFFAFQHLMENGEQSPY 141
Query: 1078 ACFFH---DGPRGTHPLWDSRLF---------NYSEIEVLRFLLSNLRWYLDEYQFDGFR 1125
++H + + + V +LL+ ++ + DG+R
Sbjct: 142 RDWYHVKGFPLKAYTAHPNYEAWWGNPELPKLKVETPAVREYLLAVAEHWI-RFGVDGWR 200
Query: 1126 FD 1127
D
Sbjct: 201 LD 202
|
| >3bc9_A AMYB, alpha amylase, catalytic region; acarbose, thermostable, halophilic, N domain, starch binding, hydrolase; HET: G6D GLC ACI BGC ACR; 1.35A {Halothermothrix orenii} PDB: 3bcd_A* 3bcf_A Length = 599 | Back alignment and structure |
|---|
Score = 57.3 bits (138), Expect = 3e-08
Identities = 26/148 (17%), Positives = 44/148 (29%), Gaps = 51/148 (34%)
Query: 1033 FGTPEQLKYLVDECHKAGLYVLLDVVHSH-----------ASKNVLDGLNEFDGTQACFF 1081
+GT +L+ +D H + V D V +H +N D ++ F
Sbjct: 205 YGTKGELENAIDALHNNDIKVYFDAVLNHRMGADYAETVLLDENSRDKPGQYIKAWTGFN 264
Query: 1082 HDGPRGTHP--LWDSRLF--------------------------------------NYSE 1101
G G + W+ + F +Y
Sbjct: 265 FPGRNGEYSNFTWNGQCFDGTDWDDYSKESGKYLFDEKSWDWTYNWDEDYLMGADVDYEN 324
Query: 1102 IEVLRFLLSNLRWYLDEYQFDGFRFDGV 1129
V ++ +W ++ FDGFR D V
Sbjct: 325 EAVQNDVIDWGQWIINNIDFDGFRLDAV 352
|
| >2wsk_A Glycogen debranching enzyme; carbohydrate metabolism, hydrolase, glycosidase, ISO-amylase glycosyl hydrolase, glycogen metabolism; 2.25A {Escherichia coli k-12} Length = 657 | Back alignment and structure |
|---|
Score = 55.3 bits (134), Expect = 1e-07
Identities = 27/112 (24%), Positives = 46/112 (41%), Gaps = 38/112 (33%)
Query: 1037 EQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGP----RG----- 1087
++ + + HKAG+ V+LD+V +H++ E D DGP RG
Sbjct: 242 DEFRDAIKALHKAGIEVILDIVLNHSA--------ELD-------LDGPLFSLRGIDNRS 286
Query: 1088 ---THPLWDSRLFNYS---------EIEVLRFLLSNLRWYLDEYQFDGFRFD 1127
D N++ V+ + + LR++++ DGFRFD
Sbjct: 287 YYWIRE--DGDYHNWTGCGNTLNLSHPAVVDYASACLRYWVETCHVDGFRFD 336
|
| >2e8y_A AMYX protein, pullulanase; multiple domain, beta-alpha-barrel, alpha-amylase-family, HY; 2.11A {Bacillus subtilis} PDB: 2e8z_A* 2e9b_A* Length = 718 | Back alignment and structure |
|---|
Score = 54.7 bits (132), Expect = 2e-07
Identities = 25/105 (23%), Positives = 42/105 (40%), Gaps = 32/105 (30%)
Query: 1039 LKYLVDECHKAGLYVLLDVVHSH-ASKNVLDGLNEFDGTQACFFHDGPRGTHP-----LW 1092
LK +++ H+ GL V+LDVV +H + + T P
Sbjct: 318 LKQMINTLHQHGLRVILDVVFNHVYKRE----------------NSPFEKTVPGYFFRHD 361
Query: 1093 DSRLF-NYS----EIE-----VLRFLLSNLRWYLDEYQFDGFRFD 1127
+ N + +I +F+ + ++L+EY DGFRFD
Sbjct: 362 ECGKPSNGTGVGNDIASERRMARKFIADCVVYWLEEYNVDGFRFD 406
|
| >3faw_A Reticulocyte binding protein; TIM barrel, beta barrel, hydrolase, cell WALL, peptidoglycan-anchor, secreted; 2.10A {Streptococcus agalactiae COH1} PDB: 3fax_A* Length = 877 | Back alignment and structure |
|---|
Score = 54.1 bits (130), Expect = 2e-07
Identities = 29/103 (28%), Positives = 48/103 (46%), Gaps = 31/103 (30%)
Query: 1039 LKYLVDECHKAGLYVLLDVVHSH-ASKNVLDG--------LNEFDGTQACFFHDGPRG-- 1087
LK L+ + HK G+ V+LDVV++H A + + +NE DG+ + G
Sbjct: 372 LKQLIHDIHKRGMGVILDVVYNHTAKTYLFEDIEPNYYHFMNE-DGS----PRESFGGGR 426
Query: 1088 ---THPLWDSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFD 1127
TH + R L+ ++++ E++ DGFRFD
Sbjct: 427 LGTTHAM------------SRRVLVDSIKYLTSEFKVDGFRFD 457
|
| >3zss_A Putative glucanohydrolase PEP1A; alpha-glucan biosynthesis, glycoside hydrolase FA; 1.80A {Streptomyces coelicolor} PDB: 3zst_A* 3zt5_A* 3zt6_A* 3zt7_A* Length = 695 | Back alignment and structure |
|---|
Score = 53.8 bits (129), Expect = 3e-07
Identities = 32/186 (17%), Positives = 54/186 (29%), Gaps = 56/186 (30%)
Query: 1033 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVL-----DGLNEFDGTQACFFHDGPRG 1087
GT + + V E K GL + LD + + + +FH P G
Sbjct: 317 LGTLDDFDHFVTEAGKLGLEIALDFALQCSPDHPWVHKHPE-----------WFHHRPDG 365
Query: 1088 THPLWDSRLFNYSEI----------EVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNH 1137
T ++ Y +I + + LR ++D FR D
Sbjct: 366 TIAHAENPPKKYQDIYPIAFDADPDGLATETVRILRHWMDH-GVRIFRVD---------- 414
Query: 1138 GCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEG 1197
N T + + ++ P++I +AE PA +
Sbjct: 415 ----------------NPHTKPVAFWERVIADINGTDPDVIFLAE-AFTRPAMMATL--A 455
Query: 1198 GTGFDY 1203
GF
Sbjct: 456 QIGFQQ 461
|
| >2ya1_A Putative alkaline amylopullulanase; hydrolase, glycoside hydrolase; HET: BGC GLC; 2.25A {Streptococcus pneumoniae} Length = 1014 | Back alignment and structure |
|---|
Score = 54.1 bits (130), Expect = 3e-07
Identities = 26/105 (24%), Positives = 45/105 (42%), Gaps = 35/105 (33%)
Query: 1039 LKYLVDECHKAGLYVLLDVVHSH-ASKNVLDG--------LNEFDGTQACFFHDGPRGT- 1088
K L++E HK G+ +LDVV++H A ++ + ++ DGT
Sbjct: 564 FKNLINEIHKRGMGAILDVVYNHTAKVDLFEDLEPNYYHFMDA-DGT----PRTS--FGG 616
Query: 1089 ------HPLWDSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFD 1127
H + R L+ ++++ +D Y+ DGFRFD
Sbjct: 617 GRLGTTHHM------------TKRLLIDSIKYLVDTYKVDGFRFD 649
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 54.1 bits (129), Expect = 3e-07
Identities = 85/653 (13%), Positives = 186/653 (28%), Gaps = 199/653 (30%)
Query: 600 TPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAG------LFGTPEQLKY--LVDECHK 651
+ E++ +++ L ++ Y L+
Sbjct: 47 SKEEIDHIIMSKDAV------SGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKT 100
Query: 652 AGLFGTPEQLKYLVDECHKAGLFGTPEQL-KYLV--DECH---KAGLFGTPEQLK---YL 702
+ Y+ E L+ + KY V + + + L +L+ +
Sbjct: 101 EQRQPSMMTRMYI--EQRDR-LYNDNQVFAKYNVSRLQPYLKLRQAL----LELRPAKNV 153
Query: 703 VDECHKAGLFGTPEQ-------LKYLVDECHKAGLF-------GTPEQ-LKYLVDECHKA 747
+ G+ G+ + L Y V +F +PE L+ L ++
Sbjct: 154 L--ID--GVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQI 209
Query: 748 GLFGT--PEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLLCFMHVVCAAGDFNNWNR 805
T + + H E + L + ++ LL ++V N
Sbjct: 210 DPNWTSRSDHSSNIKLRIHSI----QAELRRLLKSKPYENCLLVLLNV---------QNA 256
Query: 806 EEFAYKKLDFGKWELVLPPNPDGSCKLTHLSQVKLVV-RNQHGHLLDRLSPWATYVTEPP 864
+ + + CK+ L+ R + + D LS A T
Sbjct: 257 KAW--NAFNLS-------------CKI-------LLTTRFKQ--VTDFLS--AATTTHIS 290
Query: 865 VVGHAYEQRIWNPKPQDKHKWTSSKPKKPDNLKIYESHVGICTQEQKCASYEDFVRVVIP 924
+ D H T + + + ++ Q+ +P
Sbjct: 291 L---------------DHHSMTLTPDE---VKSLLLKYLDCRPQD-------------LP 319
Query: 925 RIVKQG--MAIPDKWI-ELLKKFKDEDWNMGNIVHTLTNR--RYMEKTVAYAESHDQALV 979
R V + I E ++ W+ N H ++ +E ++ E +
Sbjct: 320 REVLTTNPRRL--SIIAESIRDGLAT-WD--NWKHVNCDKLTTIIESSLNVLEPAEY--- 371
Query: 980 GDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKF---GTPEQLKYLVDECHKAGL-FGT 1035
++M+ +S + I + +V++ HK L
Sbjct: 372 -----------RKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQ 420
Query: 1036 PEQLKYLVDECHKAGLYVLLDV-------VHSHASKNVLDGLNEFDGTQACFFHDGPRGT 1088
P++ + +Y+ L V +H ++++D N F D
Sbjct: 421 PKESTISI---P--SIYLELKVKLENEYALH----RSIVDHYN----IPKTFDSDDL--I 465
Query: 1089 HPLWDSRLFNY-----------SEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSML---- 1133
P D +++ + + R + + R+ + + D ++ S+L
Sbjct: 466 PPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQ 525
Query: 1134 ----YHNHGCGEGFSGHYDEYFGLNVDTDALIYLM-VANKFLHDKYPEIITIA 1181
Y + C Y+ L +L + + KY +++ IA
Sbjct: 526 QLKFYKPYICDN--DPKYERLVN-----AILDFLPKIEENLICSKYTDLLRIA 571
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 47.9 bits (113), Expect = 2e-05
Identities = 49/340 (14%), Positives = 104/340 (30%), Gaps = 91/340 (26%)
Query: 799 DFNNWNREEFAYKKLDFGKWELVLPPNPDGSCKL---THLSQVKLVVRNQHGHLLDR--- 852
D + + + +++D +++ + T LS+ + +V+ +L
Sbjct: 37 DVQDMPKSILSKEEID----HIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYK 92
Query: 853 --LSPWATYVTEPPVVGHAYEQ---RIWNPKPQDKHKWTSSKPKKPDNLKIYESHVGICT 907
+SP T +P ++ Y + R++N Q K+ S+ + L+
Sbjct: 93 FLMSPIKTEQRQPSMMTRMYIEQRDRLYN-DNQVFAKYNVSRLQPYLKLRQ-------AL 144
Query: 908 QEQKCASYEDFVRVVIPRIVKQGMAIPDKW---IELLKKFKDEDWNMGNIVHTLTNRRYM 964
E + A ++ G+ K +++ +K + M + ++
Sbjct: 145 LELRPAKN----------VLIDGVLGSGKTWVALDVCLSYKVQC-KMDFKIF------WL 187
Query: 965 EKTVAYAESHDQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLV 1024
+ S + L EM + DP+ + +K +
Sbjct: 188 --NLKNCNSPETVL-------------EMLQKLLYQIDPNW-----TSRSDHSSNIKLRI 227
Query: 1025 DECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQAC----- 1079
E + L + ++ L VLL+V + + F+ + C
Sbjct: 228 HS-------IQAELRRLLKSKPYENCLLVLLNV----QNAKAWNA---FNLS--CKILLT 271
Query: 1080 -------FFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSNL 1112
F TH D + EV LL L
Sbjct: 272 TRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL 311
|
| >2wan_A Pullulanase; hydrolase, glycoside hydrolase, polysaccharide, amylase, starch, carbohydrate; 1.65A {Bacillus acidopullulyticus} Length = 921 | Back alignment and structure |
|---|
Score = 53.7 bits (129), Expect = 4e-07
Identities = 27/100 (27%), Positives = 43/100 (43%), Gaps = 22/100 (22%)
Query: 1039 LKYLVDECHKAGLYVLLDVVHSH-ASKNVLDGLNEFDGTQ-ACFFHDGPRGTHPLWDSRL 1096
LK L+ H+ + V +DVV++H V D FD ++ G
Sbjct: 534 LKQLIQSLHQQRIGVNMDVVYNHTFDVMVSD----FDKIVPQYYYRTDSNGN-------Y 582
Query: 1097 FNYS----EIE-----VLRFLLSNLRWYLDEYQFDGFRFD 1127
N S E +F+L ++ ++++EY DGFRFD
Sbjct: 583 TNGSGCGNEFATEHPMAQKFVLDSVNYWVNEYHVDGFRFD 622
|
| >2vr5_A Glycogen operon protein GLGX; hydrolase, glycosidase, glycosyl hydrolase, glycogen debraching; HET: GLC A16; 2.8A {Sulfolobus solfataricus} PDB: 2vnc_A* 2vuy_A Length = 718 | Back alignment and structure |
|---|
Score = 53.5 bits (129), Expect = 4e-07
Identities = 29/112 (25%), Positives = 48/112 (42%), Gaps = 36/112 (32%)
Query: 1037 EQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGP----RG----- 1087
K +V+E H AG+ V++DVV++H + E + H GP RG
Sbjct: 267 LSFKKMVNELHNAGIEVIIDVVYNHTA--------EGN-------HLGPTLSFRGIDNTA 311
Query: 1088 ---THPLWDSRLFNYS---------EIEVLRFLLSNLRWYLDEYQFDGFRFD 1127
P +++ V++ +L +LR+++ E DGFRFD
Sbjct: 312 YYMLQPDNKRYYLDFTGTGNTLNLSHPRVIQMVLDSLRYWVTEMHVDGFRFD 363
|
| >2ya0_A Putative alkaline amylopullulanase; hydrolase, glycoside hydrolase; 1.85A {Streptococcus pneumoniae} PDB: 2ya2_A* Length = 714 | Back alignment and structure |
|---|
Score = 53.5 bits (129), Expect = 4e-07
Identities = 26/105 (24%), Positives = 45/105 (42%), Gaps = 35/105 (33%)
Query: 1039 LKYLVDECHKAGLYVLLDVVHSH-ASKNVLDG--------LNEFDGTQACFFHDGPRGT- 1088
K L++E HK G+ +LDVV++H A ++ + ++ DGT
Sbjct: 257 FKNLINEIHKRGMGAILDVVYNHTAKVDLFEDLEPNYYHFMDA-DGT----PRTS--FGG 309
Query: 1089 ------HPLWDSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFD 1127
H + R L+ ++++ +D Y+ DGFRFD
Sbjct: 310 GRLGTTHHM------------TKRLLIDSIKYLVDTYKVDGFRFD 342
|
| >4aee_A Alpha amylase, catalytic region; hydrolase, hyperthermostable, cyclodextrin hydrolase, GH13; 2.28A {Staphylothermus marinus} Length = 696 | Back alignment and structure |
|---|
Score = 52.9 bits (127), Expect = 6e-07
Identities = 21/156 (13%), Positives = 46/156 (29%), Gaps = 48/156 (30%)
Query: 1022 YLVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHAS------------------ 1063
+D+ GT E + LV H + ++LD+ H +
Sbjct: 302 KSIDK-----YLGTMEDFEKLVQVLHSRKIKIVLDITMHHTNPCNELFVKALREGENSPY 356
Query: 1064 ----KNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRL-------------------FNYS 1100
+ E + + L+ FN+
Sbjct: 357 WEMFSFLSPPPKEIVELMLKYIDGEECRSRELYKLDYFRNNKPFYEAFFNIWLMAKFNHD 416
Query: 1101 EIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHN 1136
+ + + ++++D+ DGFR D V ++++
Sbjct: 417 NPRTVDYFIDITKFWIDK-GIDGFRID-VAMGIHYS 450
|
| >4aio_A Limit dextrinase; hydrolase, pullulanase, glycoside hydrolase family 13; 1.90A {Hordeum vulgare} PDB: 2x4c_A* 2y4s_A* 2y5e_A* 2x4b_A Length = 884 | Back alignment and structure |
|---|
Score = 50.6 bits (121), Expect = 3e-06
Identities = 22/104 (21%), Positives = 38/104 (36%), Gaps = 27/104 (25%)
Query: 1039 LKYLVDECHKAGLYVLLDVVHSH-ASKNVLDGLNEFDGTQ-ACFFHDGPRGT-------- 1088
+ +V ++ GL V++DVV++H S + D + G
Sbjct: 381 YRQMVQALNRIGLRVVMDVVYNHLDSSGPCGISSVLDKIVPGYYVRRDTNGQIENSAAMN 440
Query: 1089 -----HPLWDSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFD 1127
H + V R ++ +L + Y+ DGFRFD
Sbjct: 441 NTASEHFM------------VDRLIVDDLLNWAVNYKVDGFRFD 472
|
| >1g94_A Alpha-amylase; beta-alpha-8-barrel, 3 domain structure, hydrolase; HET: DAF GLC; 1.74A {Pseudoalteromonas haloplanktis} SCOP: b.71.1.1 c.1.8.1 PDB: 1g9h_A* 1l0p_A 1aqm_A* 1aqh_A* 1b0i_A 1jd7_A 1jd9_A 1kxh_A* Length = 448 | Back alignment and structure |
|---|
Score = 49.7 bits (118), Expect = 4e-06
Identities = 31/220 (14%), Positives = 59/220 (26%), Gaps = 39/220 (17%)
Query: 1033 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKN-------VLDGLNEFDGTQACFFHD-G 1084
G Q +V+ C AG+ + +D + +H + G F FH+
Sbjct: 61 GGNRAQFIDMVNRCSAAGVDIYVDTLINHMAAGSGTGTAGNSFGNKSFPIYSPQDFHESC 120
Query: 1085 PRGTHPLWDSRL------------FNYSEIEVLRFLLSNLRWYLDEYQFDGFRFD----- 1127
+ R + + V + + + GFRFD
Sbjct: 121 TINNSDYGNDRYRVQNCELVGLADLDTASNYVQNTIAAYINDLQA-IGVKGFRFDASKHV 179
Query: 1128 ------GVTSMLYHNHGC-GEGFSG-----HYDEYFGLNVDTDALIYLMVANKFLHDKYP 1175
+ + + + E EY + T+ + N F +
Sbjct: 180 AASDIQSLMAKVNGSPVVFQEVIDQGGEAVGASEYLSTGLVTEFKYSTELGNTFRNGSLA 239
Query: 1176 EIITIAEDVSGMPASCRPVTEGGTGFDYRLVSLEGSALSA 1215
+ E G S V + R G+ ++
Sbjct: 240 WLSNFGEGW-GFMPSSSAVVFVDNHDNQRGHGGAGNVITF 278
|
| >1wpc_A Glucan 1,4-alpha-maltohexaosidase; maltohexaose-producing amylase, alpha-amylase, acarbose, HYD; HET: ACI GLC GAL; 1.90A {Bacillus SP} SCOP: b.71.1.1 c.1.8.1 PDB: 1wp6_A* 2d3l_A* 2d3n_A* 2die_A 2gjp_A* 2gjr_A 1w9x_A* Length = 485 | Back alignment and structure |
|---|
Score = 49.5 bits (118), Expect = 5e-06
Identities = 25/128 (19%), Positives = 45/128 (35%), Gaps = 18/128 (14%)
Query: 1033 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLW 1092
+GT QL+ V G+ V DVV +H G + + +A + R
Sbjct: 79 YGTRSQLQAAVTSLKNNGIQVYGDVVMNHKG-----GADATEMVRAVEVNPNNRNQEVTG 133
Query: 1093 DSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGV--------TSMLYHNHGCGEGFS 1144
+ + ++ RF +++ + FDGV + +Y G G+ +
Sbjct: 134 EYTIEAWT-----RFDFPGRGNTHSSFKWRWYHFDGVDWDQSRRLNNRIYKFRGHGKAWD 188
Query: 1145 GHYDEYFG 1152
D G
Sbjct: 189 WEVDTENG 196
|
| >1hvx_A Alpha-amylase; hydrolase, glycosyltransferase, thermostability; 2.00A {Geobacillus stearothermophilus} SCOP: b.71.1.1 c.1.8.1 Length = 515 | Back alignment and structure |
|---|
Score = 49.1 bits (117), Expect = 8e-06
Identities = 29/122 (23%), Positives = 44/122 (36%), Gaps = 7/122 (5%)
Query: 1033 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLW 1092
+GT Q + H AG+ V DVV H K DG D + D + +
Sbjct: 78 YGTKAQYLQAIQAAHAAGMQVYADVVFDH--KGGADGTEWVDAVEVNPS-DRNQEISGTY 134
Query: 1093 DSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFD--GVTSMLYHNHGCGEGFSGHYDEY 1150
+ + + S+ +W Y FDG +D S +Y G G+ + D
Sbjct: 135 QIQAWTKFDFPGRGNTYSSFKW--RWYHFDGVDWDESRKLSRIYKFRGIGKAWDWEVDTE 192
Query: 1151 FG 1152
G
Sbjct: 193 NG 194
|
| >2fhf_A Pullulanase; multiple domain, beta-alpha-barrel, alpha-amylase-family, complex with maltotetraose, hydrolase; HET: GLC; 1.65A {Klebsiella aerogenes} SCOP: b.1.18.2 b.1.18.2 b.3.1.3 b.71.1.1 c.1.8.1 PDB: 2fh6_A* 2fh8_A* 2fhb_A* 2fhc_A* 2fgz_A* Length = 1083 | Back alignment and structure |
|---|
Score = 47.7 bits (113), Expect = 2e-05
Identities = 16/100 (16%), Positives = 37/100 (37%), Gaps = 17/100 (17%)
Query: 1039 LKYLVDECHK-AGLYVLLDVVHSH-ASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRL 1096
+ ++ + G+ V++DVV++H + D + D ++ +
Sbjct: 584 FRTMIQAIKQDLGMNVIMDVVYNHTNAAGPTDRTSVLDKIVPWYYQRLNE------TTGS 637
Query: 1097 FNYS---------EIEVLRFLLSNLRWYLDEYQFDGFRFD 1127
+ + + +L + +Y+ DGFRFD
Sbjct: 638 VESATCCSDSAPEHRMFAKLIADSLAVWTTDYKIDGFRFD 677
|
| >3bh4_A Alpha-amylase; calcium, carbohydrate metabolism, glycosidase, hydrolase, metal-binding, secreted; 1.40A {Bacillus amyloliquefaciens} PDB: 1e43_A 1e3z_A* 1e40_A* 1e3x_A 1vjs_A 1ob0_A 1bli_A 1bpl_B 1bpl_A Length = 483 | Back alignment and structure |
|---|
Score = 46.7 bits (111), Expect = 4e-05
Identities = 22/129 (17%), Positives = 41/129 (31%), Gaps = 21/129 (16%)
Query: 1033 FGTPEQLKYLVDECHKAGLYVLLDVV-------HSHASKNVLDGLNEFDGTQACFFHDGP 1085
+GT +L+ + H + V DVV + ++ + +
Sbjct: 75 YGTKSELQDAIGSLHSRNVQVYGDVVLNHKAGADATEDVTAVEVNPANRNQETSEEYQIK 134
Query: 1086 RGTHPLWDSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFD--GVTSMLYHNHGCGEGF 1143
T + R Y S+ +W+ Y FDG +D S ++ G G+ +
Sbjct: 135 AWTDFRFPGRGNTY----------SDFKWHW--YHFDGADWDESRKISRIFKFRGEGKAW 182
Query: 1144 SGHYDEYFG 1152
G
Sbjct: 183 DWEVSSENG 191
|
| >1ud2_A Amylase, alpha-amylase; calcium-free, alkaline, hydrolase; 2.13A {Bacillus SP} SCOP: b.71.1.1 c.1.8.1 PDB: 1ud4_A 1ud5_A 1ud6_A 1ud8_A 1ud3_A Length = 480 | Back alignment and structure |
|---|
Score = 46.4 bits (110), Expect = 5e-05
Identities = 27/158 (17%), Positives = 44/158 (27%), Gaps = 41/158 (25%)
Query: 1013 KFGTPEQLKYLVDEC--------------HKAGLFGTPEQLKYLVDECH----------- 1047
K+GT QL+ + HK G T V+ +
Sbjct: 76 KYGTKAQLERAIGSLKSNDINVYGDVVMNHKMGADFTEAVQAVQVNPTNRWQDISGAYTI 135
Query: 1048 ----------KAGLYVLLDVVHSHAS------KNVLDGLNEFDGTQACFFHDGPRGTHPL 1091
+ Y H + + + + F T + D G +
Sbjct: 136 DAWTGFDFSGRNNAYSDFKWRWFHFNGVDWDQRYQENHIFRFANTNWNWRVDEENGNYDY 195
Query: 1092 WDSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGV 1129
++S EV L W+ DE DG+R D +
Sbjct: 196 LLGSNIDFSHPEVQDELKDWGSWFTDELDLDGYRLDAI 233
|
| >1ud2_A Amylase, alpha-amylase; calcium-free, alkaline, hydrolase; 2.13A {Bacillus SP} SCOP: b.71.1.1 c.1.8.1 PDB: 1ud4_A 1ud5_A 1ud6_A 1ud8_A 1ud3_A Length = 480 | Back alignment and structure |
|---|
Score = 44.5 bits (105), Expect = 2e-04
Identities = 20/127 (15%), Positives = 34/127 (26%), Gaps = 19/127 (14%)
Query: 1033 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLW 1092
+GT QL+ + + V DVV +H W
Sbjct: 77 YGTKAQLERAIGSLKSNDINVYGDVVMNHKM----------GADFTEAVQAVQVNPTNRW 126
Query: 1093 DSRLFNYSEIEVLRFLL-------SNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSG 1145
Y+ F S+ +W + F+G +D + ++
Sbjct: 127 QDISGAYTIDAWTGFDFSGRNNAYSDFKW--RWFHFNGVDWDQRYQENHIFRFANTNWNW 184
Query: 1146 HYDEYFG 1152
DE G
Sbjct: 185 RVDEENG 191
|
| >1ji1_A Alpha-amylase I; beta/alpha barrel, hydrolase; 1.60A {Thermoactinomyces vulgaris} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 1uh3_A* 2d0f_A* 1izj_A 1uh4_A* 1uh2_A* 2d0g_A* 2d0h_A* 1izk_A Length = 637 | Back alignment and structure |
|---|
Score = 44.8 bits (106), Expect = 2e-04
Identities = 28/177 (15%), Positives = 47/177 (26%), Gaps = 42/177 (23%)
Query: 1033 FGTPEQLKYLVDECHKAGLY----VLLDVVHSHASKN--VLDGLNEFDGTQACFFHDGPR 1086
FG L+ L+++ H ++LD V +H + D N F A P
Sbjct: 235 FGDNSTLQTLINDIHSTANGPKGYLILDGVFNHTGDSHPWFDKYNNFSSQGAYESQSSPW 294
Query: 1087 GTHPLWDSRLFNY----------------SEIEVLRFLLSNL-----RWYLDEYQFDGFR 1125
+ + + +Y S V + +N + Y DG+R
Sbjct: 295 YNYYTFYTWPDSYASFLGFNSLPKLNYGNSGSAVRGVIYNNSNSVAKTYLNPPYSVDGWR 354
Query: 1126 FDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAE 1182
D + N G + H + I E
Sbjct: 355 LD-AAQYVDANGNNGSDVTNHQ--------------IWSEFRNAVKGVNSNAAIIGE 396
|
| >1gjw_A Maltodextrin glycosyltransferase; alpha-amylase, maltosyltransferase; HET: MAL GLC; 2.1A {Thermotoga maritima} SCOP: b.71.1.1 c.1.8.1 PDB: 1gju_A* Length = 637 | Back alignment and structure |
|---|
Score = 44.4 bits (104), Expect = 2e-04
Identities = 18/92 (19%), Positives = 37/92 (40%), Gaps = 2/92 (2%)
Query: 1033 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLW 1092
F E+ K V+ CH G+ V+LD + A+++ D + T P
Sbjct: 178 FKVDEEFKAFVEACHILGIRVILDFIPRTAARDSDLIREHPDWFYWIKVEELADYTPPRA 237
Query: 1093 DSRLFNYSEIEVLRFLLS--NLRWYLDEYQFD 1122
+ F + + L + + N++ +L ++
Sbjct: 238 EELPFKVPDEDELEIIYNKENVKRHLKKFTLP 269
|
| >1jae_A Alpha-amylase; glycosidase, carbohydrate metabolism, 4-glucan-4-glucanohydrolase, hydrolase; 1.65A {Tenebrio molitor} SCOP: b.71.1.1 c.1.8.1 PDB: 1clv_A 1tmq_A 1viw_A* Length = 471 | Back alignment and structure |
|---|
Score = 43.6 bits (102), Expect = 3e-04
Identities = 22/124 (17%), Positives = 35/124 (28%), Gaps = 28/124 (22%)
Query: 1033 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEF-----------DGTQACFF 1081
G + C+ AG+ + +D V +H + G + + F
Sbjct: 71 SGDESAFTDMTRRCNDAGVRIYVDAVINHMTGMNGVGTSGSSADHDGMNYPAVPYGSGDF 130
Query: 1082 H---------DGPRGTH----PLWDSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDG 1128
H D + L D N V L+ + +D GFR D
Sbjct: 131 HSPCEVNNYQDADNVRNCELVGLRD---LNQGSDYVRGVLIDYMNHMID-LGVAGFRVDA 186
Query: 1129 VTSM 1132
M
Sbjct: 187 AKHM 190
|
| >2dh2_A 4F2 cell-surface antigen heavy chain; TIM-barrel, glycosidase like, antiparallel beta-sheet, greek terminal domain, extracellular domain; 2.10A {Homo sapiens} PDB: 2dh3_A Length = 424 | Back alignment and structure |
|---|
Score = 43.2 bits (102), Expect = 4e-04
Identities = 17/101 (16%), Positives = 33/101 (32%), Gaps = 30/101 (29%)
Query: 1032 LFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPL 1091
FG+ E L+ K + V+LD+ ++ +N
Sbjct: 77 NFGSKEDFDSLLQSAKKKSIRVILDLTPNYRGENS------------------------- 111
Query: 1092 WDSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSM 1132
W F+ V + L ++L DGF+ + ++
Sbjct: 112 W----FSTQVDTVATKVKDALEFWLQA-GVDGFQVRDIENL 147
|
| >3aie_A Glucosyltransferase-SI; beta-alpha-barrels; HET: MES; 2.10A {Streptococcus mutans} PDB: 3aic_A* 3aib_A* Length = 844 | Back alignment and structure |
|---|
Score = 43.2 bits (101), Expect = 5e-04
Identities = 8/31 (25%), Positives = 13/31 (41%)
Query: 1033 FGTPEQLKYLVDECHKAGLYVLLDVVHSHAS 1063
+GT + L + H G+ V+ D V
Sbjct: 689 YGTADDLVKAIKALHSKGIKVMADWVPDQMY 719
|
| >3ucq_A Amylosucrase; thermostability, amylose synthesis, sucrose isomerization, beta/alpha-barrel, carbohydrate binding, transferase; 1.97A {Deinococcus geothermalis} PDB: 3uer_A* Length = 655 | Back alignment and structure |
|---|
Score = 43.0 bits (101), Expect = 6e-04
Identities = 25/193 (12%), Positives = 51/193 (26%), Gaps = 61/193 (31%)
Query: 1033 FGTPEQLKYLVDECHKAGLYVLLDVVHSHAS------KNVLDGLNEF--------DGTQA 1078
GT + L L G+ ++LD+V +H + + G ++ D
Sbjct: 157 LGTMDDLSALARALRGRGISLVLDLVLNHVAREHAWAQKARAGDPKYRAYFHLFPDRRGP 216
Query: 1079 CFFHDGPRGTHPL-------WDSRL------------------FNYSEIEVLRFLLSNLR 1113
F P WD + N++ +V + +
Sbjct: 217 DAFEATLPEIFPDFAPGNFSWDEEIGEGEGGWVWTTFNSYQWDLNWANPDVFLEFVDIIL 276
Query: 1114 WYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNV----DTDALIYLMVANKF 1169
+ + + FR D + + + G + + L +
Sbjct: 277 YLANR-GVEVFRLDAIAFIW---------------KRLGTDCQNQPEVHHLTRAL--RAA 318
Query: 1170 LHDKYPEIITIAE 1182
P + AE
Sbjct: 319 ARIVAPAVAFKAE 331
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1276 | |||
| 3aml_A | 755 | OS06G0726400 protein; starch-branching, transferas | 100.0 | |
| 3k1d_A | 722 | 1,4-alpha-glucan-branching enzyme; mycobacterium t | 100.0 | |
| 1m7x_A | 617 | 1,4-alpha-glucan branching enzyme; alpha/beta barr | 100.0 | |
| 2e8y_A | 718 | AMYX protein, pullulanase; multiple domain, beta-a | 100.0 | |
| 2wan_A | 921 | Pullulanase; hydrolase, glycoside hydrolase, polys | 100.0 | |
| 3vgf_A | 558 | Malto-oligosyltrehalose trehalohydrolase; alpha/be | 100.0 | |
| 2ya0_A | 714 | Putative alkaline amylopullulanase; hydrolase, gly | 100.0 | |
| 2wsk_A | 657 | Glycogen debranching enzyme; carbohydrate metaboli | 100.0 | |
| 3faw_A | 877 | Reticulocyte binding protein; TIM barrel, beta bar | 100.0 | |
| 2fhf_A | 1083 | Pullulanase; multiple domain, beta-alpha-barrel, a | 100.0 | |
| 2ya1_A | 1014 | Putative alkaline amylopullulanase; hydrolase, gly | 100.0 | |
| 2vr5_A | 718 | Glycogen operon protein GLGX; hydrolase, glycosida | 100.0 | |
| 3m07_A | 618 | Putative alpha amylase; IDP00968, csgid, structura | 100.0 | |
| 1bf2_A | 750 | Isoamylase; hydrolase, glycosidase, debranching en | 100.0 | |
| 2bhu_A | 602 | Maltooligosyltrehalose trehalohydrolase; alpha-amy | 100.0 | |
| 1wzl_A | 585 | Alpha-amylase II; pullulan, GH-13, alpha-amylase f | 100.0 | |
| 1ea9_C | 583 | Cyclomaltodextrinase; hydrolase, glycosidase; 3.2A | 100.0 | |
| 1j0h_A | 588 | Neopullulanase; beta-alpha-barrels, hydrolase; 1.9 | 100.0 | |
| 4aio_A | 884 | Limit dextrinase; hydrolase, pullulanase, glycosid | 100.0 | |
| 1ji1_A | 637 | Alpha-amylase I; beta/alpha barrel, hydrolase; 1.6 | 100.0 | |
| 1gjw_A | 637 | Maltodextrin glycosyltransferase; alpha-amylase, m | 100.0 | |
| 4aee_A | 696 | Alpha amylase, catalytic region; hydrolase, hypert | 100.0 | |
| 4aef_A | 645 | Neopullulanase (alpha-amylase II); hydrolase, ther | 100.0 | |
| 4aie_A | 549 | Glucan 1,6-alpha-glucosidase; hydrolase, glycoside | 100.0 | |
| 1wza_A | 488 | Alpha-amylase A; hydrolase, halophilic, thermophil | 100.0 | |
| 2wc7_A | 488 | Alpha amylase, catalytic region; CD/PUL-hydrolyzin | 100.0 | |
| 1zja_A | 557 | Trehalulose synthase; sucrose isomerase, alpha-amy | 100.0 | |
| 2zic_A | 543 | Dextran glucosidase; TIM barrel, (beta/alpha)8-bar | 100.0 | |
| 2z1k_A | 475 | (NEO)pullulanase; hydrolase, structural genomics, | 100.0 | |
| 1m53_A | 570 | Isomaltulose synthase; klebsiella SP. LX3, sucrose | 100.0 | |
| 1uok_A | 558 | Oligo-1,6-glucosidase; sugar degradation, hydrolas | 100.0 | |
| 3aj7_A | 589 | Oligo-1,6-glucosidase; (beta/alpha)8-barrel, hydro | 100.0 | |
| 3edf_A | 601 | FSPCMD, cyclomaltodextrinase; alpha-cyclodextrin c | 100.0 | |
| 2ze0_A | 555 | Alpha-glucosidase; TIM barrel, glucoside hydrolase | 100.0 | |
| 2aaa_A | 484 | Alpha-amylase; glycosidase; 2.10A {Aspergillus nig | 100.0 | |
| 3dhu_A | 449 | Alpha-amylase; structural genomics, hydrolase, gly | 100.0 | |
| 2guy_A | 478 | Alpha-amylase A; (beta-alpha) 8 barrel, hydrolase; | 100.0 | |
| 1lwj_A | 441 | 4-alpha-glucanotransferase; alpha-amylase family, | 100.0 | |
| 3zss_A | 695 | Putative glucanohydrolase PEP1A; alpha-glucan bios | 100.0 | |
| 3bmv_A | 683 | Cyclomaltodextrin glucanotransferase; glycosidase, | 100.0 | |
| 1d3c_A | 686 | Cyclodextrin glycosyltransferase; alpha-amylase, p | 100.0 | |
| 1qho_A | 686 | Alpha-amylase; glycoside hydrolase, starch degrada | 100.0 | |
| 3k8k_A | 669 | Alpha-amylase, SUSG; alpha8/BETA8 barrel, CBM, bet | 99.98 | |
| 1wpc_A | 485 | Glucan 1,4-alpha-maltohexaosidase; maltohexaose-pr | 99.98 | |
| 1cyg_A | 680 | Cyclodextrin glucanotransferase; glycosyltransfera | 99.98 | |
| 3bc9_A | 599 | AMYB, alpha amylase, catalytic region; acarbose, t | 99.97 | |
| 3ucq_A | 655 | Amylosucrase; thermostability, amylose synthesis, | 99.97 | |
| 3bh4_A | 483 | Alpha-amylase; calcium, carbohydrate metabolism, g | 99.97 | |
| 3czg_A | 644 | Sucrose hydrolase; (alpha/beta)8-barrel; HET: GLC; | 99.97 | |
| 1ud2_A | 480 | Amylase, alpha-amylase; calcium-free, alkaline, hy | 99.97 | |
| 1hvx_A | 515 | Alpha-amylase; hydrolase, glycosyltransferase, the | 99.97 | |
| 1g5a_A | 628 | Amylosucrase; glycosyltransferase, glycoside hydro | 99.97 | |
| 1mxg_A | 435 | Alpha amylase; hyperthermostable, family 13 glycos | 99.97 | |
| 2dh2_A | 424 | 4F2 cell-surface antigen heavy chain; TIM-barrel, | 99.97 | |
| 3aml_A | 755 | OS06G0726400 protein; starch-branching, transferas | 99.96 | |
| 1ht6_A | 405 | AMY1, alpha-amylase isozyme 1; barley, beta-alpha- | 99.96 | |
| 1gcy_A | 527 | Glucan 1,4-alpha-maltotetrahydrolase; beta-alpha-b | 99.96 | |
| 1g94_A | 448 | Alpha-amylase; beta-alpha-8-barrel, 3 domain struc | 99.96 | |
| 1ua7_A | 422 | Alpha-amylase; beta-alpha-barrels, acarbose, greek | 99.95 | |
| 1jae_A | 471 | Alpha-amylase; glycosidase, carbohydrate metabolis | 99.95 | |
| 4gqr_A | 496 | Pancreatic alpha-amylase; glycosyl hydrolase, diab | 99.94 | |
| 1r7a_A | 504 | Sucrose phosphorylase; beta-alpha-barrels, dimer, | 99.93 | |
| 1iv8_A | 720 | Maltooligosyl trehalose synthase; beta alpha barre | 99.91 | |
| 3k1d_A | 722 | 1,4-alpha-glucan-branching enzyme; mycobacterium t | 99.9 | |
| 1n11_A | 437 | Ankyrin; clathrin, BAND 3, anion exchanger, struct | 99.86 | |
| 1n11_A | 437 | Ankyrin; clathrin, BAND 3, anion exchanger, struct | 99.86 | |
| 3hje_A | 704 | 704AA long hypothetical glycosyltransferase; treha | 99.85 | |
| 1m7x_A | 617 | 1,4-alpha-glucan branching enzyme; alpha/beta barr | 99.82 | |
| 3m07_A | 618 | Putative alpha amylase; IDP00968, csgid, structura | 99.68 | |
| 3vgf_A | 558 | Malto-oligosyltrehalose trehalohydrolase; alpha/be | 99.67 | |
| 4g8k_A | 337 | 2-5A-dependent ribonuclease; ankyrin-repeat domain | 99.63 | |
| 3klk_A | 1039 | Glucansucrase; native form, open conformation, mul | 99.59 | |
| 4g8k_A | 337 | 2-5A-dependent ribonuclease; ankyrin-repeat domain | 99.59 | |
| 1wdy_A | 285 | 2-5A-dependent ribonuclease; hydrolase, RNA-bindin | 99.58 | |
| 1wdy_A | 285 | 2-5A-dependent ribonuclease; hydrolase, RNA-bindin | 99.57 | |
| 3aie_A | 844 | Glucosyltransferase-SI; beta-alpha-barrels; HET: M | 99.57 | |
| 2bhu_A | 602 | Maltooligosyltrehalose trehalohydrolase; alpha-amy | 99.56 | |
| 2vr5_A | 718 | Glycogen operon protein GLGX; hydrolase, glycosida | 99.53 | |
| 4aio_A | 884 | Limit dextrinase; hydrolase, pullulanase, glycosid | 99.53 | |
| 1wzl_A | 585 | Alpha-amylase II; pullulan, GH-13, alpha-amylase f | 99.52 | |
| 1ea9_C | 583 | Cyclomaltodextrinase; hydrolase, glycosidase; 3.2A | 99.5 | |
| 3utm_A | 351 | Tankyrase-1; tankyrase, TNKS, ankryin repeat clust | 99.49 | |
| 2wsk_A | 657 | Glycogen debranching enzyme; carbohydrate metaboli | 99.49 | |
| 3ljn_A | 364 | Hypothetical protein; ankyrin, structural genomics | 99.47 | |
| 3kea_A | 285 | K1L; tropism, ANK repeat, viral protein; 2.30A {Va | 99.47 | |
| 3utm_A | 351 | Tankyrase-1; tankyrase, TNKS, ankryin repeat clust | 99.46 | |
| 1bf2_A | 750 | Isoamylase; hydrolase, glycosidase, debranching en | 99.45 | |
| 3ljn_A | 364 | Hypothetical protein; ankyrin, structural genomics | 99.44 | |
| 3ttq_A | 1108 | Dextransucrase; (beta/alpha)8 barrel, transferase; | 99.44 | |
| 1j0h_A | 588 | Neopullulanase; beta-alpha-barrels, hydrolase; 1.9 | 99.43 | |
| 2fo1_E | 373 | LIN-12 protein; beta-barrel, protein-DNA complex, | 99.42 | |
| 3kea_A | 285 | K1L; tropism, ANK repeat, viral protein; 2.30A {Va | 99.41 | |
| 2f8y_A | 223 | Notch homolog 1, translocation-associated (drosoph | 99.41 | |
| 2xai_A | 261 | ASB-9, ankyrin repeat and SOCS box protein 9; tran | 99.4 | |
| 2wan_A | 921 | Pullulanase; hydrolase, glycoside hydrolase, polys | 99.4 | |
| 2f8y_A | 223 | Notch homolog 1, translocation-associated (drosoph | 99.39 | |
| 2e8y_A | 718 | AMYX protein, pullulanase; multiple domain, beta-a | 99.39 | |
| 2fo1_E | 373 | LIN-12 protein; beta-barrel, protein-DNA complex, | 99.38 | |
| 3aji_A | 231 | 26S proteasome non-ATPase regulatory subunit 10; g | 99.38 | |
| 2ya0_A | 714 | Putative alkaline amylopullulanase; hydrolase, gly | 99.37 | |
| 2ya1_A | 1014 | Putative alkaline amylopullulanase; hydrolase, gly | 99.37 | |
| 3aji_A | 231 | 26S proteasome non-ATPase regulatory subunit 10; g | 99.37 | |
| 3b7b_A | 237 | Euchromatic histone-lysine N-methyltransferase 1; | 99.36 | |
| 1k1a_A | 241 | B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa | 99.36 | |
| 1yyh_A | 253 | HN1;, notch 1, ankyrin domain; ankyrin repeats, ce | 99.36 | |
| 1oy3_D | 282 | Transcription factor inhibitor I-kappa-B-beta; pro | 99.36 | |
| 3b7b_A | 237 | Euchromatic histone-lysine N-methyltransferase 1; | 99.36 | |
| 1yyh_A | 253 | HN1;, notch 1, ankyrin domain; ankyrin repeats, ce | 99.35 | |
| 3eu9_A | 240 | Huntingtin-interacting protein 14; epigenetics, an | 99.35 | |
| 3d9h_A | 285 | CDNA FLJ77766, highly similar to HOMO sapiens anky | 99.34 | |
| 2fhf_A | 1083 | Pullulanase; multiple domain, beta-alpha-barrel, a | 99.33 | |
| 3d9h_A | 285 | CDNA FLJ77766, highly similar to HOMO sapiens anky | 99.32 | |
| 1ji1_A | 637 | Alpha-amylase I; beta/alpha barrel, hydrolase; 1.6 | 99.32 | |
| 1k1a_A | 241 | B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa | 99.32 | |
| 1oy3_D | 282 | Transcription factor inhibitor I-kappa-B-beta; pro | 99.31 | |
| 2dzn_A | 228 | Probable 26S proteasome regulatory subunit P28; an | 99.29 | |
| 3eu9_A | 240 | Huntingtin-interacting protein 14; epigenetics, an | 99.27 | |
| 2dzn_A | 228 | Probable 26S proteasome regulatory subunit P28; an | 99.26 | |
| 2xai_A | 261 | ASB-9, ankyrin repeat and SOCS box protein 9; tran | 99.24 | |
| 3faw_A | 877 | Reticulocyte binding protein; TIM barrel, beta bar | 99.23 | |
| 2rfa_A | 232 | Transient receptor potential cation channel subfa | 99.22 | |
| 1s70_B | 299 | 130 kDa myosin-binding subunit of smooth muscle my | 99.21 | |
| 4b93_B | 269 | Ankyrin repeat domain-containing protein 27; endoc | 99.19 | |
| 3hra_A | 201 | Ankyrin repeat family protein; structural protein; | 99.18 | |
| 2rfa_A | 232 | Transient receptor potential cation channel subfa | 99.16 | |
| 1ikn_D | 236 | Protein (I-kappa-B-alpha), protein (NF-kappa-B P50 | 99.15 | |
| 2aja_A | 376 | Ankyrin repeat family protein; NESG, Q5ZSV0, struc | 99.13 | |
| 3hra_A | 201 | Ankyrin repeat family protein; structural protein; | 99.12 | |
| 1ikn_D | 236 | Protein (I-kappa-B-alpha), protein (NF-kappa-B P50 | 99.12 | |
| 1s70_B | 299 | 130 kDa myosin-binding subunit of smooth muscle my | 99.11 | |
| 4b93_B | 269 | Ankyrin repeat domain-containing protein 27; endoc | 99.08 | |
| 2aja_A | 376 | Ankyrin repeat family protein; NESG, Q5ZSV0, struc | 99.06 | |
| 2pnn_A | 273 | Transient receptor potential cation channel subfa | 99.05 | |
| 2etb_A | 256 | Transient receptor potential cation channel subfam | 99.03 | |
| 4gpm_A | 169 | Engineered protein OR264; de novo protein, structu | 99.03 | |
| 1sw6_A | 327 | Regulatory protein SWI6; transcription regulation, | 99.02 | |
| 2etb_A | 256 | Transient receptor potential cation channel subfam | 99.02 | |
| 4gpm_A | 169 | Engineered protein OR264; de novo protein, structu | 98.97 | |
| 3v30_A | 172 | DNA-binding protein rfxank; structural genomics co | 98.93 | |
| 3v30_A | 172 | DNA-binding protein rfxank; structural genomics co | 98.92 | |
| 3jxi_A | 260 | Vanilloid receptor-related osmotically activated p | 98.91 | |
| 1bd8_A | 156 | P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr | 98.91 | |
| 3f6q_A | 179 | Integrin-linked protein kinase; ILK, integrin-link | 98.89 | |
| 4hbd_A | 276 | KN motif and ankyrin repeat domain-containing Pro; | 98.89 | |
| 1sw6_A | 327 | Regulatory protein SWI6; transcription regulation, | 98.88 | |
| 3jxi_A | 260 | Vanilloid receptor-related osmotically activated p | 98.87 | |
| 1ihb_A | 162 | P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit | 98.86 | |
| 2pnn_A | 273 | Transient receptor potential cation channel subfa | 98.86 | |
| 3f6q_A | 179 | Integrin-linked protein kinase; ILK, integrin-link | 98.86 | |
| 3twr_A | 165 | Tankyrase-2; ankyrin repeat, protein-protein inter | 98.85 | |
| 3v31_A | 167 | Ankyrin repeat family A protein 2; structural geno | 98.83 | |
| 2y1l_E | 169 | Darpin-8.4; hydrolase-inhibitor complex, DEVD darp | 98.82 | |
| 3aie_A | 844 | Glucosyltransferase-SI; beta-alpha-barrels; HET: M | 98.81 | |
| 3twr_A | 165 | Tankyrase-2; ankyrin repeat, protein-protein inter | 98.79 | |
| 2rfm_A | 192 | Putative ankyrin repeat protein TV1425; ANK repeat | 98.79 | |
| 2y1l_E | 169 | Darpin-8.4; hydrolase-inhibitor complex, DEVD darp | 98.78 | |
| 4hbd_A | 276 | KN motif and ankyrin repeat domain-containing Pro; | 98.77 | |
| 1ycs_B | 239 | 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres | 98.73 | |
| 1z0n_A | 96 | 5'-AMP-activated protein kinase, beta-1 subunit; b | 98.73 | |
| 1ihb_A | 162 | P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit | 98.72 | |
| 3v31_A | 167 | Ankyrin repeat family A protein 2; structural geno | 98.72 | |
| 2rfm_A | 192 | Putative ankyrin repeat protein TV1425; ANK repeat | 98.7 | |
| 1awc_B | 153 | Protein (GA binding protein beta 1); complex (tran | 98.7 | |
| 1bd8_A | 156 | P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr | 98.7 | |
| 4aef_A | 645 | Neopullulanase (alpha-amylase II); hydrolase, ther | 98.68 | |
| 1z0n_A | 96 | 5'-AMP-activated protein kinase, beta-1 subunit; b | 98.59 | |
| 1awc_B | 153 | Protein (GA binding protein beta 1); complex (tran | 98.59 | |
| 2vge_A | 229 | RELA-associated inhibitor; iaspp, nucleus, apoptos | 98.56 | |
| 1ycs_B | 239 | 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres | 98.44 | |
| 1d9s_A | 136 | Cyclin-dependent kinase 4 inhibitor B; helix-turn- | 98.42 | |
| 3klk_A | 1039 | Glucansucrase; native form, open conformation, mul | 98.41 | |
| 1bi7_B | 156 | P16INK4A, MTS1, multiple tumor suppressor; cyclin | 98.37 | |
| 2jab_A | 136 | H10-2-G3; HER2, darpin, ankyrin repeat protein, me | 98.3 | |
| 3t8k_A | 186 | Uncharacterized protein; structural genomics, PSI- | 98.29 | |
| 1bi7_B | 156 | P16INK4A, MTS1, multiple tumor suppressor; cyclin | 98.28 | |
| 1d9s_A | 136 | Cyclin-dependent kinase 4 inhibitor B; helix-turn- | 98.24 | |
| 2jab_A | 136 | H10-2-G3; HER2, darpin, ankyrin repeat protein, me | 98.2 | |
| 2vge_A | 229 | RELA-associated inhibitor; iaspp, nucleus, apoptos | 98.19 | |
| 1n0r_A | 126 | 4ANK, 4 ankyrin repeats; structural protein; 1.50A | 98.16 | |
| 1n0r_A | 126 | 4ANK, 4 ankyrin repeats; structural protein; 1.50A | 98.15 | |
| 3t8k_A | 186 | Uncharacterized protein; structural genomics, PSI- | 98.13 | |
| 3ehr_A | 222 | Osteoclast-stimulating factor 1; beta barrel, heli | 98.11 | |
| 3deo_A | 183 | Signal recognition particle 43 kDa protein; chloro | 98.09 | |
| 4aee_A | 696 | Alpha amylase, catalytic region; hydrolase, hypert | 98.07 | |
| 3c5r_A | 137 | BARD-1, BRCA1-associated ring domain protein 1; an | 98.02 | |
| 4gqr_A | 496 | Pancreatic alpha-amylase; glycosyl hydrolase, diab | 97.96 | |
| 3ui2_A | 244 | Signal recognition particle 43 kDa protein, chlor; | 97.9 | |
| 1gjw_A | 637 | Maltodextrin glycosyltransferase; alpha-amylase, m | 97.89 | |
| 3ehr_A | 222 | Osteoclast-stimulating factor 1; beta barrel, heli | 97.85 | |
| 3mi6_A | 745 | Alpha-galactosidase; NESG, structural genomics, PS | 97.74 | |
| 3c5r_A | 137 | BARD-1, BRCA1-associated ring domain protein 1; an | 97.72 | |
| 3deo_A | 183 | Signal recognition particle 43 kDa protein; chloro | 97.72 | |
| 3aaa_C | 123 | Myotrophin, protein V-1; actin capping protein, ba | 97.68 | |
| 2b0o_E | 301 | UPLC1; arfgap, structural genomics, structural gen | 97.66 | |
| 3lvq_E | 497 | ARF-GAP with SH3 domain, ANK repeat and PH domain | 97.66 | |
| 1n0q_A | 93 | 3ANK, 3 ankyrin repeats; structural protein; 1.26A | 97.65 | |
| 3ui2_A | 244 | Signal recognition particle 43 kDa protein, chlor; | 97.64 | |
| 2b0o_E | 301 | UPLC1; arfgap, structural genomics, structural gen | 97.55 | |
| 3jue_A | 368 | Arfgap with coiled-coil, ANK repeat and PH domain | 97.54 | |
| 3lvq_E | 497 | ARF-GAP with SH3 domain, ANK repeat and PH domain | 97.52 | |
| 3aaa_C | 123 | Myotrophin, protein V-1; actin capping protein, ba | 97.52 | |
| 2l6b_A | 115 | NR1C; ankyrin, consensus, repeat protein, ising mo | 97.51 | |
| 1n0q_A | 93 | 3ANK, 3 ankyrin repeats; structural protein; 1.26A | 97.47 | |
| 2yfo_A | 720 | Alpha-galactosidase-sucrose kinase agask; hydrolas | 97.43 | |
| 1dcq_A | 278 | PYK2-associated protein beta; zinc-binding module, | 97.42 | |
| 1dcq_A | 278 | PYK2-associated protein beta; zinc-binding module, | 97.4 | |
| 2l6b_A | 115 | NR1C; ankyrin, consensus, repeat protein, ising mo | 97.35 | |
| 3nme_A | 294 | Ptpkis1 protein, SEX4 glucan phosphatase; dual spe | 97.34 | |
| 3jue_A | 368 | Arfgap with coiled-coil, ANK repeat and PH domain | 97.32 | |
| 2zgd_A | 110 | 3 repeat synthetic ankyrin; ankyrin repeat, hydrox | 97.22 | |
| 4aie_A | 549 | Glucan 1,6-alpha-glucosidase; hydrolase, glycoside | 97.07 | |
| 1lwj_A | 441 | 4-alpha-glucanotransferase; alpha-amylase family, | 96.94 | |
| 1zja_A | 557 | Trehalulose synthase; sucrose isomerase, alpha-amy | 96.89 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 96.88 | |
| 1m53_A | 570 | Isomaltulose synthase; klebsiella SP. LX3, sucrose | 96.8 | |
| 2qlv_B | 252 | Protein SIP2, protein SPM2; heterotrimer, ATP-bind | 96.76 | |
| 2xn2_A | 732 | Alpha-galactosidase; hydrolase, glycosidase; HET: | 96.72 | |
| 2zgd_A | 110 | 3 repeat synthetic ankyrin; ankyrin repeat, hydrox | 96.72 | |
| 3bh4_A | 483 | Alpha-amylase; calcium, carbohydrate metabolism, g | 96.64 | |
| 3dhu_A | 449 | Alpha-amylase; structural genomics, hydrolase, gly | 96.57 | |
| 2zic_A | 543 | Dextran glucosidase; TIM barrel, (beta/alpha)8-bar | 96.55 | |
| 3aj7_A | 589 | Oligo-1,6-glucosidase; (beta/alpha)8-barrel, hydro | 96.54 | |
| 3ttq_A | 1108 | Dextransucrase; (beta/alpha)8 barrel, transferase; | 96.41 | |
| 1uok_A | 558 | Oligo-1,6-glucosidase; sugar degradation, hydrolas | 96.39 | |
| 2ze0_A | 555 | Alpha-glucosidase; TIM barrel, glucoside hydrolase | 96.35 | |
| 1g94_A | 448 | Alpha-amylase; beta-alpha-8-barrel, 3 domain struc | 96.33 | |
| 3k8k_A | 669 | Alpha-amylase, SUSG; alpha8/BETA8 barrel, CBM, bet | 96.33 | |
| 1wza_A | 488 | Alpha-amylase A; hydrolase, halophilic, thermophil | 96.32 | |
| 2dh2_A | 424 | 4F2 cell-surface antigen heavy chain; TIM-barrel, | 96.14 | |
| 1hvx_A | 515 | Alpha-amylase; hydrolase, glycosyltransferase, the | 96.12 | |
| 2guy_A | 478 | Alpha-amylase A; (beta-alpha) 8 barrel, hydrolase; | 96.11 | |
| 2z1k_A | 475 | (NEO)pullulanase; hydrolase, structural genomics, | 96.11 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 96.09 | |
| 1wpc_A | 485 | Glucan 1,4-alpha-maltohexaosidase; maltohexaose-pr | 96.03 | |
| 1ua7_A | 422 | Alpha-amylase; beta-alpha-barrels, acarbose, greek | 95.95 | |
| 1ud2_A | 480 | Amylase, alpha-amylase; calcium-free, alkaline, hy | 95.83 | |
| 1zy9_A | 564 | Alpha-galactosidase; TM1192, struc genomics, joint | 95.59 | |
| 2aaa_A | 484 | Alpha-amylase; glycosidase; 2.10A {Aspergillus nig | 95.58 | |
| 1mxg_A | 435 | Alpha amylase; hyperthermostable, family 13 glycos | 95.57 | |
| 3czg_A | 644 | Sucrose hydrolase; (alpha/beta)8-barrel; HET: GLC; | 95.52 | |
| 3vmn_A | 643 | Dextranase; TIM barrel, immunoglobrin fold, greek- | 95.48 | |
| 2wc7_A | 488 | Alpha amylase, catalytic region; CD/PUL-hydrolyzin | 95.37 | |
| 4fnq_A | 729 | Alpha-galactosidase AGAB; glycoside hydrolase, hyd | 95.15 | |
| 1ht6_A | 405 | AMY1, alpha-amylase isozyme 1; barley, beta-alpha- | 95.1 | |
| 1jae_A | 471 | Alpha-amylase; glycosidase, carbohydrate metabolis | 95.0 | |
| 3zss_A | 695 | Putative glucanohydrolase PEP1A; alpha-glucan bios | 94.69 | |
| 3nme_A | 294 | Ptpkis1 protein, SEX4 glucan phosphatase; dual spe | 94.42 | |
| 3edf_A | 601 | FSPCMD, cyclomaltodextrinase; alpha-cyclodextrin c | 94.32 | |
| 1qho_A | 686 | Alpha-amylase; glycoside hydrolase, starch degrada | 94.17 | |
| 1g5a_A | 628 | Amylosucrase; glycosyltransferase, glycoside hydro | 94.05 | |
| 3bc9_A | 599 | AMYB, alpha amylase, catalytic region; acarbose, t | 93.98 | |
| 3ucq_A | 655 | Amylosucrase; thermostability, amylose synthesis, | 93.74 | |
| 1qnr_A | 344 | Endo-1,4-B-D-mannanase; hydrolase, anomalous scatt | 93.59 | |
| 1iv8_A | 720 | Maltooligosyl trehalose synthase; beta alpha barre | 93.3 | |
| 3hje_A | 704 | 704AA long hypothetical glycosyltransferase; treha | 93.22 | |
| 1d3c_A | 686 | Cyclodextrin glycosyltransferase; alpha-amylase, p | 93.04 | |
| 1gcy_A | 527 | Glucan 1,4-alpha-maltotetrahydrolase; beta-alpha-b | 92.71 | |
| 2f2h_A | 773 | Putative family 31 glucosidase YICI; BETA8alpha8 b | 92.16 | |
| 2g3m_A | 693 | Maltase, alpha-glucosidase; hydrolase, glycoside h | 92.03 | |
| 3lpp_A | 898 | Sucrase-isomaltase; glycoside hydrolase family 31, | 91.83 | |
| 3l4y_A | 875 | Maltase-glucoamylase, intestinal; glycoside hydrol | 91.45 | |
| 3n12_A | 333 | Chitinase A, chinctu2; zinc atoms, complex, hydrol | 91.21 | |
| 3n9k_A | 399 | Glucan 1,3-beta-glucosidase; aromatic entranceway/ | 90.51 | |
| 3poh_A | 451 | Endo-beta-N-acetylglucosaminidase F1; TIM barrel, | 90.07 | |
| 1cyg_A | 680 | Cyclodextrin glucanotransferase; glycosyltransfera | 89.94 | |
| 2qlv_B | 252 | Protein SIP2, protein SPM2; heterotrimer, ATP-bind | 89.8 | |
| 3bmv_A | 683 | Cyclomaltodextrin glucanotransferase; glycosidase, | 89.74 | |
| 1h4p_A | 408 | Glucan 1,3-beta-glucosidase I/II; hydrolase, gluca | 89.12 | |
| 3nsx_A | 666 | Alpha-glucosidase; structural genomics, PSI-2, pro | 88.58 | |
| 1ur4_A | 399 | Galactanase; hydrolase, beta-1, glycoside hydrolas | 87.79 | |
| 4ba0_A | 817 | Alpha-glucosidase, putative, ADG31B; hydrolase; HE | 87.73 | |
| 3civ_A | 343 | Endo-beta-1,4-mannanase; TIM barrel, hydrolase; 1. | 87.65 | |
| 1vjz_A | 341 | Endoglucanase; TM1752, structural genomics, JCSG, | 87.42 | |
| 4axn_A | 328 | Chitinase C1; hydrolase; 1.68A {Serratia marcescen | 86.83 | |
| 2z0b_A | 131 | GDE5, KIAA1434, putative glycerophosphodiester pho | 85.62 | |
| 1ac0_A | 108 | Glucoamylase; hydrolase, starch binding domain; HE | 85.43 | |
| 2aam_A | 309 | Hypothetical protein TM1410; structural genomics, | 85.16 | |
| 1ceo_A | 343 | Cellulase CELC; glycosyl hydrolase, family A/5 of | 84.42 | |
| 2ebn_A | 289 | Endo-beta-N-acetylglucosaminidase F1; hydrolase(gl | 83.35 | |
| 3pzg_A | 383 | Mannan endo-1,4-beta-mannosidase. glycosyl hydrol | 80.52 |
| >3aml_A OS06G0726400 protein; starch-branching, transferase; HET: EPE; 1.70A {Oryza sativa japonica group} PDB: 3amk_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-66 Score=644.77 Aligned_cols=442 Identities=44% Similarity=0.800 Sum_probs=373.9
Q ss_pred hhhhhHhhccccCCCCCcccCeeecCceEEEEEccCCcEEEEEccCCCCccccccceecCCCeEEEEcCCCCCCCcccCc
Q psy9003 755 QLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLLCFMHVVCAAGDFNNWNREEFAYKKLDFGKWELVLPPNPDGSCKLTH 834 (1276)
Q Consensus 755 ~l~~F~~~Y~~~G~~Gtp~G~~y~~D~a~FalwAP~A~~VsLvGDFN~wd~~~~pM~r~~~GVWsl~Ip~~~~G~~~i~h 834 (1276)
.++.|..+|.++|++ +..++++|++|||+|++|+|+||||+|++..++|.+...|+|+++||+. +|.+.+.+
T Consensus 47 ~~~~f~~~~~~lGa~-------~~~~gv~F~vwAP~A~~V~l~gdfn~w~~~~~~m~~~~~GvW~~~v~~~-~g~~~i~~ 118 (755)
T 3aml_A 47 GLEEFSKGYLKFGIN-------TVDGATIYREWAPAAQEAQLIGEFNNWNGAKHKMEKDKFGIWSIKISHV-NGKPAIPH 118 (755)
T ss_dssp CHHHHTTGGGTSEEE-------EETTEEEEEEECTTCSEEEEEEGGGTTCCTTCBCEECTTSEEEEEEECB-TTBCSSCT
T ss_pred cHHHHhhhhhcCceE-------EeCCeEEEEEECCCCCEEEEEEecCCCCCceeeceeCCCCEEEEEEccc-ccccCCCC
Confidence 478899899886654 4457789999999999999999999999889999988889999999952 23334678
Q ss_pred ccEEEEEEEEeCCeeeeecCCcceEeecCCC-CCccccceeeCCCCCCCCCcCCCCCCCCCCceEEEEecCCccccCccC
Q psy9003 835 LSQVKLVVRNQHGHLLDRLSPWATYVTEPPV-VGHAYEQRIWNPKPQDKHKWTSSKPKKPDNLKIYESHVGICTQEQKCA 913 (1276)
Q Consensus 835 Gs~YkYrV~~~dG~~~~~~DPYAkav~~~~~-~s~v~~~~~~~p~~~~~y~W~~~rp~~~~d~vIYElHVr~ft~~~~~G 913 (1276)
|..|+|+|.+.+|.++.++||||+++..++. ++..+.+.+++|.....|+|...+++.+.+++|||+|||+|+.++.+|
T Consensus 119 g~~Y~y~i~~~~g~~~~~~dpya~~~~~~~~~~~~~~~~~v~d~~~~~~~~w~~~~~~~~~~~~IYE~hv~~~~~~~~~G 198 (755)
T 3aml_A 119 NSKVKFRFRHGGGAWVDRIPAWIRYATFDASKFGAPYDGVHWDPPACERYVFKHPRPPKPDAPRIYEAHVGMSGEEPEVS 198 (755)
T ss_dssp TEEEEEEEECTTCCCEEECCTTCSCEEECCSSSSCCEEEEECCCCGGGCCCCCSCCCCCCSSCEEEEEESTTCSSSSSCC
T ss_pred CCEEEEEEECCCCcEEecCCcchheEeecccccCcccceEEECCcccccCCCCCcCCCCCCCCEEEEEeeeccccCCCCC
Confidence 8999999998789888999999999988765 355556677877433468999888777788999999999999888899
Q ss_pred cHHHHHHhhhhHHHHcCCCCCccceeecccccccccccccceeeccCccccccccccccCCCcccCCCcccccccccccc
Q psy9003 914 SYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAESHDQALVGDKTIAFWLMDKEM 993 (1276)
Q Consensus 914 tf~gl~ek~LdyLK~LGVna~d~wV~LmP~f~~eew~~~~pi~~l~~~Pi~E~~i~~~~S~~~~~WGYdp~nyf~~d~~~ 993 (1276)
+|+++++++|||||+||||+ |||||++ ++ +. ..+|||++.+||
T Consensus 199 t~~~l~~~~L~yLk~LGvt~----I~L~Pi~--------------------e~--~~-----~~~~GY~~~dy~------ 241 (755)
T 3aml_A 199 TYREFADNVLPRIRANNYNT----VQLMAIM--------------------EH--SY-----YASFGYHVTNFF------ 241 (755)
T ss_dssp CHHHHHHHTHHHHHHTTCCE----EEEESCE--------------------EC--SC-----GGGTTCSCSEEE------
T ss_pred CHHHHHHHHHHHHHHcCCCE----EEECchh--------------------cC--CC-----CCCCCCccCCCC------
Confidence 99999986799999999999 9999444 33 22 245999999999
Q ss_pred ccccCCCCCCcccccccccccCCCCCccccccccccCCCCCCHHHHHHHHHHHHHcCCEEEEEEeccccCCcccCCCcCC
Q psy9003 994 YTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEF 1073 (1276)
Q Consensus 994 y~~~S~~~Dp~~~~dap~~~yas~s~hkYt~D~~~ID~~~Gt~eEfK~LV~alHk~GI~VILDvV~NHt~~~~~~~~~~f 1073 (1276)
+|+ |+||+++|||+||++||++||+||||+|+||++.++.+++..|
T Consensus 242 ---------------a~~-------------------~~~Gt~~df~~lv~~~H~~Gi~VilD~V~NH~~~~~~~g~~~f 287 (755)
T 3aml_A 242 ---------------AVS-------------------SRSGTPEDLKYLVDKAHSLGLRVLMDVVHSHASNNVTDGLNGY 287 (755)
T ss_dssp ---------------EEC-------------------GGGCCHHHHHHHHHHHHHTTCEEEEEECCSCBCCCTTTSGGGG
T ss_pred ---------------ccC-------------------CCCCCHHHHHHHHHHHHHCCCEEEEEEeccccccccccchhcc
Confidence 666 8899999999999999999999999999999999887776667
Q ss_pred C---CCCCcccccCCCCCCCCCCCcCCCCCcHHHHHHHHHHHHHHHHhCCCcEEccCCccccccccCCCCCCCCCCCccc
Q psy9003 1074 D---GTQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEY 1150 (1276)
Q Consensus 1074 ~---g~~~~Yy~~~~~g~~~~W~g~~LN~~np~Vr~~Iidsl~~Wv~eygVDGFRfD~a~~L~~~d~g~g~~~~~~~~~~ 1150 (1276)
+ +..+.||+.++++.+..|++++||+++|+||++|+++++||++||||||||||++.+|.+.+++...+|.+.+.++
T Consensus 288 d~~~~~~~~yf~~~~~g~~~~w~~~~lN~~~p~V~~~l~~~l~~Wl~e~gvDGfR~Dav~~m~~~~~g~~~~f~~~~~~~ 367 (755)
T 3aml_A 288 DVGQNTHESYFHTGDRGYHKLWDSRLFNYANWEVLRFLLSNLRYWMDEFMFDGFRFDGVTSMLYHHHGINKGFTGNYKEY 367 (755)
T ss_dssp CSSCCGGGSSBCCGGGGEETTTTEECBCTTSHHHHHHHHHHHHHHHHHHCCCEEEETTHHHHHBTTTTTTCCCCSCGGGT
T ss_pred ccCCCCCcceeecCCCCccCCCCCceeccCCHHHHHHHHHHHHHHHHHcCCCEEEecchhhhhhcccCcccccccccccc
Confidence 6 5557888877777788999999999999999999999999999999999999999999887776655666666667
Q ss_pred cCCCCCchHHHHHHHHHHHHHhhCCCeEEEEEccCCCCCCccccccCCcccCcccC-CC---------------------
Q psy9003 1151 FGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDYRLV-SL--------------------- 1208 (1276)
Q Consensus 1151 ~~~~~d~~a~~Fl~el~~~Vr~~~PdvilIAE~~s~~p~~~~p~~~gglGFD~~~n-~l--------------------- 1208 (1276)
++.+.+.+++.||+++++.+++.+|++++|||.|+++|.+++|+..+|+||||.|+ .+
T Consensus 368 ~~~~~~~~ai~fl~~~~~~v~~~~p~~~lIaE~~~~~p~~~~~~~~gglgFd~~~~~~~~~~~~~~l~~~~~~~~~~~~l 447 (755)
T 3aml_A 368 FSLDTDVDAIVYMMLANHLMHKLLPEATIVAEDVSGMPVLCRPVDEGGVGFDFRLAMAIPDRWIDYLKNKEDRKWSMSEI 447 (755)
T ss_dssp SSTTBCHHHHHHHHHHHHHHHHHCTTCEEEECCSSCCTTTTSCGGGTSCCCSEEECTTHHHHHHHHHHHCCGGGCCHHHH
T ss_pred cccccchhHHHHHHHHHHHHHHHCCCeEEEEEccCCCccceeeccCCCccccccccccchHHHHHHHhhCCccccCHHHH
Confidence 77777888999999999999999999999999999999999998888899988653 10
Q ss_pred -----------------c--c----------------------------------c-----------------h-h----
Q psy9003 1209 -----------------E--G----------------------------------S-----------------A-L---- 1213 (1276)
Q Consensus 1209 -----------------E--e----------------------------------s-----------------a-L---- 1213 (1276)
+ . . + +
T Consensus 448 ~~~l~~~~~~~~~vnf~~nHD~~r~g~~~~~f~l~d~~~~~~~~~l~~~~~~~~~~~~~~k~a~~~llt~pG~P~lly~G 527 (755)
T 3aml_A 448 VQTLTNRRYTEKCIAYAESHDQSIVGDKTIAFLLMDKEMYTGMSDLQPASPTINRGIALQKMIHFITMALGGDGYLNFMG 527 (755)
T ss_dssp HHHHHCSCTTSCEEECSCCCCTTSCCCBCHHHHHHTTHHHHSCBSSSCCCHHHHHHHHHHHHHHHHHHHHHCSEEEEETT
T ss_pred HHHHHhccCchhheehhhcCCccccccccccccccchhhhhhhhhccccchhhhhhHHHHHHHHHHHHHCCCCEEEEeCc
Confidence 0 0 0 0 0
Q ss_pred -----h----------------------------------HHHHHHHHHHHHHhcccCCCCCeeEeecCCCeEEEEEcCc
Q psy9003 1214 -----S----------------------------------ALFDAAMNTTEERFKWLSADPGYVSTKHEGDKVIIFERAG 1254 (1276)
Q Consensus 1214 -----S----------------------------------~~F~~~Ln~l~~~~p~L~~~~~~~l~nHD~~RVlsf~R~~ 1254 (1276)
. .+|.+.|+++|+.+|+|+.+..++...+..++|++|.|..
T Consensus 528 ~E~G~~~~~~~p~~g~~~~~~~~r~~W~~~~~~~~~~~~l~~~~r~Li~lRk~~paL~~G~~~~~~~~~~~~vlaf~R~~ 607 (755)
T 3aml_A 528 NEFGHPEWIDFPREGNNWSYDKCRRQWSLVDTDHLRYKYMNAFDQAMNALEEEFSFLSSSKQIVSDMNEKDKVIVFERGD 607 (755)
T ss_dssp GGGTCCSBCCCCCGGGTTCCTTSSCCHHHHHCTTBSHHHHHHHHHHHHHHHHHHCGGGCCCEEEEEEETTTTEEEEEETT
T ss_pred hhcCCcCcccCcccCCCCCcccccCCcccccCccchhHHHHHHHHHHHHHHHhChhhcCCCEEEEeecCCCcEEEEEECC
Confidence 0 2466889999999999987766666666788999999999
Q ss_pred EEEEEeCCCCCCccccccccC
Q psy9003 1255 LLFAFNFNGTQSFTDYRGKSN 1275 (1276)
Q Consensus 1255 ll~v~N~~~~~s~~~y~~~~~ 1275 (1276)
++||+||++.+++++|+||+|
T Consensus 608 llVv~N~s~~~~~~~~~i~vp 628 (755)
T 3aml_A 608 LVFVFNFHPNKTYKGYKVGCD 628 (755)
T ss_dssp EEEEEECCSSCCEEEEEEEES
T ss_pred EEEEEECCCCCccceeEECCC
Confidence 999999999988999999986
|
| >3k1d_A 1,4-alpha-glucan-branching enzyme; mycobacterium tuberculosis H37RV, mesophilic human pathogen, RV1326C gene, glycosyl transferase; 2.33A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-60 Score=588.23 Aligned_cols=417 Identities=29% Similarity=0.459 Sum_probs=335.8
Q ss_pred ccccCCCCCc-ccCeeecCceEEEEEccCCcEEEEEccCCCCccccccceec-CCCeEEEEcCCCCCCCcccCcccEEEE
Q psy9003 763 CHKAGLFGTP-EQLKYLVDECHKAGLLCFMHVVCAAGDFNNWNREEFAYKKL-DFGKWELVLPPNPDGSCKLTHLSQVKL 840 (1276)
Q Consensus 763 Y~~~G~~Gtp-~G~~y~~D~a~FalwAP~A~~VsLvGDFN~wd~~~~pM~r~-~~GVWsl~Ip~~~~G~~~i~hGs~YkY 840 (1276)
|+.+|++-.. .|..=.+++++|++|||+|++|+|+||||+|++..+||.+. +.|+|++++|+...| ..|+|
T Consensus 118 ~~~~gah~~~~~~~~~~~~g~~F~vwAP~A~~V~l~gdfn~w~~~~~~m~~~~~~GvW~~~i~~~~~g-------~~Y~y 190 (722)
T 3k1d_A 118 WEVLGAHPRSFTTADGVVSGVSFAVWAPNAKGVSLIGEFNGWNGHEAPMRVLGPSGVWELFWPDFPCD-------GLYKF 190 (722)
T ss_dssp GGTSEEEEEEEECSSSEEEEEEEEEECTTCSEEEEEEGGGTTCCCSCBCEECGGGCEEEEEEETCCTT-------CEEEE
T ss_pred HHhcCCEEEeecCCcCCCceEEEEEECCCCCEEEEEeecCCCCCCcccCEEcCCCCEEEEEeCCCCCC-------CEEEE
Confidence 6677776431 11000156789999999999999999999999989999875 569999999987665 69999
Q ss_pred EEEEeCCeeeeecCCcceEeecCCCC-CccccceeeCCCCCCCCCcCCC-----CC---CCCCCceEEEEecCCccccCc
Q psy9003 841 VVRNQHGHLLDRLSPWATYVTEPPVV-GHAYEQRIWNPKPQDKHKWTSS-----KP---KKPDNLKIYESHVGICTQEQK 911 (1276)
Q Consensus 841 rV~~~dG~~~~~~DPYAkav~~~~~~-s~v~~~~~~~p~~~~~y~W~~~-----rp---~~~~d~vIYElHVr~ft~~~~ 911 (1276)
+|.+.+|.++.++||||+++..++.. |++. ++ .|+|+.. ++ +.+++++|||+|+|+|+..
T Consensus 191 ~i~~~~g~~~~~~DPya~~~~~~~~~~s~v~-----~~----~~~w~d~~w~~~~~~~~~~~~~~~IYE~h~~s~~~~-- 259 (722)
T 3k1d_A 191 RVHGADGVVTDRADPFAFGTEVPPQTASRVT-----SS----DYTWGDDDWMAGRALRNPVNEAMSTYEVHLGSWRPG-- 259 (722)
T ss_dssp EEECTTSCEEEECCTTCSSBCCTTCCCEECC-----CC----CCCCSCHHHHHHHTTCCGGGSCCEEEEECTTTSSTT--
T ss_pred EEEcCCCcEEEeecccceeeccCCCcceEEe-----CC----CCCCCchHHhhhccccccCCCCeEEEEEehhhccCC--
Confidence 99988899889999999998776542 3332 21 3566542 22 2346899999999999864
Q ss_pred cCcHHHHHHhhhhHHHHcCCCCCccceeecccccccccccccceeeccCccccccccccccCCCcccCCCcccccccccc
Q psy9003 912 CASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAESHDQALVGDKTIAFWLMDK 991 (1276)
Q Consensus 912 ~Gtf~gl~ek~LdyLK~LGVna~d~wV~LmP~f~~eew~~~~pi~~l~~~Pi~E~~i~~~~S~~~~~WGYdp~nyf~~d~ 991 (1276)
|+|++++++++||||+||||+ |||||+ .++ +.. .+|||++.+||
T Consensus 260 -G~~~~l~~~l~~yLk~lG~t~----I~L~Pi--------------------~e~--~~~-----~~wGY~~~~y~---- 303 (722)
T 3k1d_A 260 -LSYRQLARELTDYIVDQGFTH----VELLPV--------------------AEH--PFA-----GSWGYQVTSYY---- 303 (722)
T ss_dssp -CCHHHHHHHHHHHHHHHTCSE----EEESCC--------------------EEC--SCG-----GGTTCSCSEEE----
T ss_pred -CCHHHHHHHHHHHHHHcCCCe----EEECCc--------------------ccC--CCC-----CCCCCCcccCc----
Confidence 999999998569999999999 999944 433 222 35999999999
Q ss_pred ccccccCCCCCCcccccccccccCCCCCccccccccccCCCCCCHHHHHHHHHHHHHcCCEEEEEEeccccCCcccCCCc
Q psy9003 992 EMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLN 1071 (1276)
Q Consensus 992 ~~y~~~S~~~Dp~~~~dap~~~yas~s~hkYt~D~~~ID~~~Gt~eEfK~LV~alHk~GI~VILDvV~NHt~~~~~~~~~ 1071 (1276)
+|+ ++||+++|||+||++||++||+||||+|+||++.+ .+++.
T Consensus 304 -----------------a~~-------------------~~yGt~~dfk~lV~~~H~~GI~VilD~V~NH~~~~-~~~~~ 346 (722)
T 3k1d_A 304 -----------------APT-------------------SRFGTPDDFRALVDALHQAGIGVIVDWVPAHFPKD-AWALG 346 (722)
T ss_dssp -----------------EEC-------------------GGGCCHHHHHHHHHHHHHTTCEEEEEECTTCCCCC-TTTTT
T ss_pred -----------------Ccc-------------------ccCCCHHHHHHHHHHHHHcCCEEEEEEEeeccCCc-cchhh
Confidence 565 88999999999999999999999999999999987 45666
Q ss_pred CCCCCCCcccccC-CCCCCCCCCCcCCCCCcHHHHHHHHHHHHHHHHhCCCcEEccCCccccccccCCCCCC-CCCCCcc
Q psy9003 1072 EFDGTQACFFHDG-PRGTHPLWDSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEG-FSGHYDE 1149 (1276)
Q Consensus 1072 ~f~g~~~~Yy~~~-~~g~~~~W~g~~LN~~np~Vr~~Iidsl~~Wv~eygVDGFRfD~a~~L~~~d~g~g~~-~~~~~~~ 1149 (1276)
.|+|.. .|+..+ ..+.+++|++.+||+++|+||++|++++++|+++|||||||||++.+|.+.|+++.++ |. .+
T Consensus 347 ~fdg~~-~y~~~d~~~~~~~~Wg~~~ln~~~p~Vr~~l~~~~~~Wl~~~gvDGfR~Dav~~mly~d~~r~~g~w~---~n 422 (722)
T 3k1d_A 347 RFDGTP-LYEHSDPKRGEQLDWGTYVFDFGRPEVRNFLVANALYWLQEFHIDGLRVDAVASMLYLDYSRPEGGWT---PN 422 (722)
T ss_dssp TTTSSC-CSBCCCCCSSSTTCCCCCCBCTTSHHHHHHHHHHHHHHHHHSCCCEEEECCTHHHHBCCCCCCSSCCS---CC
T ss_pred cCCCCc-ccccCCcccCccCCCCCeeecCCCHHHHHHHHHHHHHHHHHhCCCEEEEcchhhhhhccccccccccc---cc
Confidence 777753 343333 3467889999999999999999999999999999999999999999998888765542 32 34
Q ss_pred ccCCCCCchHHHHHHHHHHHHHhhCCCeEEEEEccCCCCCCccccccCCcccCcccC-CC--------------------
Q psy9003 1150 YFGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDYRLV-SL-------------------- 1208 (1276)
Q Consensus 1150 ~~~~~~d~~a~~Fl~el~~~Vr~~~PdvilIAE~~s~~p~~~~p~~~gglGFD~~~n-~l-------------------- 1208 (1276)
.++++.+.+++.||+++++.+++.+|++++|||+|+++|.+++|...+|+|||++|| .+
T Consensus 423 ~~gg~~n~~~~~fl~~l~~~v~~~~P~~~~iaE~~t~~p~v~~~~~~gGlGfd~~wn~~~~~d~l~y~~~~~~~r~~~~~ 502 (722)
T 3k1d_A 423 VHGGRENLEAVQFLQEMNATAHKVAPGIVTIAEESTPWSGVTRPTNIGGLGFSMKWNMGWMHDTLDYVSRDPVYRSYHHH 502 (722)
T ss_dssp CSSCSBCHHHHHHHHHHHHHHHHHSTTCEEEECCCSSCCCTTSCGGGTCCCCSEEECHHHHHHHHHHHHSCGGGGGGGHH
T ss_pred cCCCccChHHHHHHHHHHHHHHHhCCCeEEEEEecCCCcccccccccCCCccccccccchHHHHHHHHhcCchhhhhhhh
Confidence 567788889999999999999999999999999999999999999999999999886 21
Q ss_pred -----------c----------c-----c------------------hh----h--------------------------
Q psy9003 1209 -----------E----------G-----S------------------AL----S-------------------------- 1214 (1276)
Q Consensus 1209 -----------E----------e-----s------------------aL----S-------------------------- 1214 (1276)
+ . + ++ +
T Consensus 503 ~lt~~~~ya~~e~f~l~~sHD~~~~Gk~~ll~~~~gd~~~~~a~lr~~~a~~lt~PG~plif~G~E~G~~~e~~~~~~l~ 582 (722)
T 3k1d_A 503 EMTFSMLYAFSENYVLPLSHDEVVHGKGTLWGRMPGNNHVKAAGLRSLLAYQWAHPGKQLLFMGQEFGQRAEWSEQRGLD 582 (722)
T ss_dssp HHHGGGGTTTSSCEEEEECGGGSSTTSCCHHHHSCSSHHHHHHHHHHHHHHHHHSSSEEEEETTGGGTCCSCCCTTTCCC
T ss_pred ccchhhhhhcccceecccCcchhccCccchhhhCCCcHHHHHHHHHHHHHHHHhCCCeeEEecccccccccccccccccC
Confidence 0 0 0 00 0
Q ss_pred -------------HHHHHHHHHHHHHhcccCCCC----C--eeEeecCCCeEEEEEcC-----cEEEEEeCCCCCCcccc
Q psy9003 1215 -------------ALFDAAMNTTEERFKWLSADP----G--YVSTKHEGDKVIIFERA-----GLLFAFNFNGTQSFTDY 1270 (1276)
Q Consensus 1215 -------------~~F~~~Ln~l~~~~p~L~~~~----~--~~l~nHD~~RVlsf~R~-----~ll~v~N~~~~~s~~~y 1270 (1276)
.+|.+.|+++|++.|+|.... . |+......+.|++|.|. .++||+||+|. .+++|
T Consensus 583 W~~~~~~~~~~~l~~~~~~Ln~lR~~~paL~~~d~~~~gf~wi~~~d~~~~viaf~R~~~~~~~llvv~N~s~~-~~~~y 661 (722)
T 3k1d_A 583 WFQLDENGFSNGIQRLVRDINDIYRCHPALWSLDTTPEGYSWIDANDSANNVLSFMRYGSDGSVLACVFNFAGA-EHRDY 661 (722)
T ss_dssp GGGGGSSSSHHHHHHHHHHHHHHHHHCGGGTTTTTSGGGEEEEEEEETTTTEEEEEEECTTSCEEEEEEECSSS-CEEEE
T ss_pred cccccCccccHHHHHHHHHHHHHHHhChhhhccccCCCceEEEEccCCCCCEEEEEEEcCCCCEEEEEEeCCCC-CceeE
Confidence 367889999999999987432 2 33444447889999992 49999999998 67899
Q ss_pred ccccC
Q psy9003 1271 RGKSN 1275 (1276)
Q Consensus 1271 ~~~~~ 1275 (1276)
+||+|
T Consensus 662 ~igvp 666 (722)
T 3k1d_A 662 RLGLP 666 (722)
T ss_dssp EEEES
T ss_pred EeccC
Confidence 99987
|
| >1m7x_A 1,4-alpha-glucan branching enzyme; alpha/beta barrel, beta sandwich, transferase; 2.30A {Escherichia coli} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 3o7y_A* 3o7z_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-58 Score=562.86 Aligned_cols=405 Identities=25% Similarity=0.418 Sum_probs=309.8
Q ss_pred CceEEEEEccCCcEEEEEccCCCCcccccccee-cCCCeEEEEcCCCCCCCcccCcccEEEEEEEEeCCeeeeecCCcce
Q psy9003 780 DECHKAGLLCFMHVVCAAGDFNNWNREEFAYKK-LDFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHGHLLDRLSPWAT 858 (1276)
Q Consensus 780 D~a~FalwAP~A~~VsLvGDFN~wd~~~~pM~r-~~~GVWsl~Ip~~~~G~~~i~hGs~YkYrV~~~dG~~~~~~DPYAk 858 (1276)
++++|++|||+|++|+|+||||+|++..++|++ ...|+|++++|+... |..|+|+|...+|.++.+.||||+
T Consensus 25 ~gv~F~vwAP~A~~V~L~gdfn~~~~~~~~M~~~~~~GvW~~~v~~~~~-------g~~Y~f~i~~~~g~~~~~~DPya~ 97 (617)
T 1m7x_A 25 TGTRFSVWAPNARRVSVVGQFNYWDGRRHPMRLRKESGIWELFIPGAHN-------GQLYKYEMIDANGNLRLKSDPYAF 97 (617)
T ss_dssp EEEEEEEECSSCSCEEEEEGGGTSCTTTCBCCCCTTTTEEEEEEETCCT-------TCEEEEEEECTTSCEEEECCTTCS
T ss_pred CcEEEEEECCCCCEEEEEEEeCCCCCceeEeEECCCCCEEEEEEcCCCC-------CCEEEEEEEcCCCcEEEecCccce
Confidence 478999999999999999999999988899987 578999999997655 469999998778988889999999
Q ss_pred EeecCCCCCccccceeeCCCCCCCCCcCCCC-C---CCCCCceEEEEecCCcccc---CccCcHHHHHHhhhhHHHHcCC
Q psy9003 859 YVTEPPVVGHAYEQRIWNPKPQDKHKWTSSK-P---KKPDNLKIYESHVGICTQE---QKCASYEDFVRVVIPRIVKQGM 931 (1276)
Q Consensus 859 av~~~~~~s~v~~~~~~~p~~~~~y~W~~~r-p---~~~~d~vIYElHVr~ft~~---~~~Gtf~gl~ek~LdyLK~LGV 931 (1276)
++..++.. .+.++++. .|+|.... + ...++++|||+|||+|+.. +.+|+|+++++++|||||+|||
T Consensus 98 ~~~~~~~~----~s~v~~~~---~~~W~~~~~~~~~~~~~~~~iYei~~~~f~~~~~~g~~g~~~~i~~~ll~yl~~lGv 170 (617)
T 1m7x_A 98 EAQMRPET----ASLICGLP---EKVVQTEERKKANQFDAPISIYEVHLGSWRRHTDNNFWLSYRELADQLVPYAKWMGF 170 (617)
T ss_dssp SEECTTTC----EEECCCCC---CCCCCCHHHHHHHSTTSCCEEEEECTTSSCBCTTTCCBCCHHHHHHHHHHHHHHTTC
T ss_pred eeccCCCc----eEEEeCCC---CCCCCCccccCCCcccCCcEEEEEEHHHhcCCCCCCCccCHHHHHHHHHHHHHHcCC
Confidence 98765431 23344443 57898753 2 1247899999999999863 3478999999985699999999
Q ss_pred CCCccceeecccccccccccccceeeccCccccccccccccCCCcccCCCccccccccccccccccCCCCCCcccccccc
Q psy9003 932 AIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAESHDQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRAC 1011 (1276)
Q Consensus 932 na~d~wV~LmP~f~~eew~~~~pi~~l~~~Pi~E~~i~~~~S~~~~~WGYdp~nyf~~d~~~y~~~S~~~Dp~~~~dap~ 1011 (1276)
|+ |||||++ ++ +. ..+|||++.+|| +|+
T Consensus 171 ~~----i~l~Pi~--------------------~~--~~-----~~~~GY~~~~y~---------------------~~~ 198 (617)
T 1m7x_A 171 TH----LELLPIN--------------------EH--PF-----DGSWGYQPTGLY---------------------APT 198 (617)
T ss_dssp SE----EEESCCE--------------------EC--SC-----GGGTTSSCSEEE---------------------EEC
T ss_pred CE----EEecccc--------------------cC--CC-----CCCCCcccccCC---------------------ccC
Confidence 99 9999544 33 21 246999999999 665
Q ss_pred cccCCCCCccccccccccCCCCCCHHHHHHHHHHHHHcCCEEEEEEeccccCCcccCCCcCCCCCCCcccccC-CCCCCC
Q psy9003 1012 EKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDG-PRGTHP 1090 (1276)
Q Consensus 1012 ~~yas~s~hkYt~D~~~ID~~~Gt~eEfK~LV~alHk~GI~VILDvV~NHt~~~~~~~~~~f~g~~~~Yy~~~-~~g~~~ 1090 (1276)
|+||+++|||+||++||++||+||||+|+||++.+. ..+..|++. +.|+..+ ..+.++
T Consensus 199 -------------------~~~Gt~~~~~~lv~~~H~~Gi~VilD~V~NH~~~~~-~~~~~~d~~-~~y~~~~~~~g~~~ 257 (617)
T 1m7x_A 199 -------------------RRFGTRDDFRYFIDAAHAAGLNVILDWVPGHFPTDD-FALAEFDGT-NLYEHSDPREGYHQ 257 (617)
T ss_dssp -------------------GGGSCHHHHHHHHHHHHHTTCEEEEEECTTSCCCST-TSSTTGGGS-CSSBCC--------
T ss_pred -------------------ccCCCHHHHHHHHHHHHHCCCEEEEEEecCcccCcc-chhhhcCCC-ccccccCcccCCcC
Confidence 889999999999999999999999999999997653 233445554 2333333 246678
Q ss_pred CCCCcCCCCCcHHHHHHHHHHHHHHHHhCCCcEEccCCccccccccCCCCCC-CCCCCccccCCCCCchHHHHHHHHHHH
Q psy9003 1091 LWDSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEG-FSGHYDEYFGLNVDTDALIYLMVANKF 1169 (1276)
Q Consensus 1091 ~W~g~~LN~~np~Vr~~Iidsl~~Wv~eygVDGFRfD~a~~L~~~d~g~g~~-~~~~~~~~~~~~~d~~a~~Fl~el~~~ 1169 (1276)
+|++.+||+++|+||++|+++++||+++|||||||||++..|.+.++++..+ |. .+.++...+.+++.||+++++.
T Consensus 258 ~w~~~~ln~~~p~v~~~i~~~~~~W~~~~gvDGfR~D~~~~~~~~d~~~~~g~~~---~~~~~~~~~~~~~~fl~~~~~~ 334 (617)
T 1m7x_A 258 DWNTLIYNYGRREVSNFLVGNALYWIERFGIDALRVDAVASMIYRDYSRKEGEWI---PNEFGGRENLEAIEFLRNTNRI 334 (617)
T ss_dssp ---CCCBCTTSHHHHHHHHHHHHHHHHHSCCCEEEECCSHHHHCC-----------------CTTCCHHHHHHHHHHHHH
T ss_pred CCCCceecCCCHHHHHHHHHHHHHHHHHhCcCEEEEcchhhhhhccccccccccc---cccccccCCchHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999987665443222 21 2334445567789999999999
Q ss_pred HHhhCCCeEEEEEccCCCCCCccccccCCcccCcccC-CC-------------------------------------c--
Q psy9003 1170 LHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDYRLV-SL-------------------------------------E-- 1209 (1276)
Q Consensus 1170 Vr~~~PdvilIAE~~s~~p~~~~p~~~gglGFD~~~n-~l-------------------------------------E-- 1209 (1276)
+++.+|++++|||.|+.+|.+++|+..+|.|||+.|| .+ +
T Consensus 335 v~~~~p~~~~iaE~~~~~~~~~~~~~~~g~gfd~~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~fv~~~nH 414 (617)
T 1m7x_A 335 LGEQVSGAVTMAEESTDFPGVSRPQDMGGLGFWYKWNLGWMHDTLDYMKLDPVYRQYHHDKLTFGILYNYTENFVLPLSH 414 (617)
T ss_dssp HHHSSTTCEEEECCSSCCTTTTBCTTTTBSCCSEEECHHHHHHHHHHHHSCGGGGGGCTHHHHGGGTTTTTSCEEEEECG
T ss_pred HHHHCCCeEEEEeCCCCCccceeeccCCCCccCcEeCCchHHHHHHHhccCccchhhhhccchhhhhcccccceEEEeCC
Confidence 9999999999999999999999888888889998765 11 0
Q ss_pred --c-----c--------------------hh--h----------------------------------------HHHHHH
Q psy9003 1210 --G-----S--------------------AL--S----------------------------------------ALFDAA 1220 (1276)
Q Consensus 1210 --e-----s--------------------aL--S----------------------------------------~~F~~~ 1220 (1276)
. + ++ + .+|.+.
T Consensus 415 D~~~~g~~~~~~~~~g~~~~~~~~~r~a~~~~l~~pG~P~iy~G~E~G~~~~~~~~~~~~W~~~~~~~~~~~~l~~~~~~ 494 (617)
T 1m7x_A 415 DEVVHGKKSILDRMPGDAWQKFANLRAYYGWMWAFPGKKLLFMGNEFAQGREWNHDASLDWHLLEGGDNWHHGVQRLVRD 494 (617)
T ss_dssp GGSSTTSCCHHHHSCSSHHHHHHHHHHHHHHHHHSSSEEEEETTTTTTCSSCCCTTSCCCGGGGCSSCCHHHHHHHHHHH
T ss_pred CCcccCccchhhhCCCcHHHHHHHHHHHHHHHHHCCCCcEEEcchhcCCCCCCCcccccChhhccccchhhHHHHHHHHH
Confidence 0 0 00 0 347899
Q ss_pred HHHHHHHhcccCCCC------CeeEeecCCCeEEEEEcC-----cEEEEEeCCCCCCccccccccC
Q psy9003 1221 MNTTEERFKWLSADP------GYVSTKHEGDKVIIFERA-----GLLFAFNFNGTQSFTDYRGKSN 1275 (1276)
Q Consensus 1221 Ln~l~~~~p~L~~~~------~~~l~nHD~~RVlsf~R~-----~ll~v~N~~~~~s~~~y~~~~~ 1275 (1276)
|+++|++.|+|+.+. .|+....+.++|++|.|. .+++|+||++. ++++|+||+|
T Consensus 495 L~~lR~~~~al~~g~~~~~~~~~~~~~~~~~~vlaf~R~~~~~~~~lvv~N~s~~-~~~~~~i~~p 559 (617)
T 1m7x_A 495 LNLTYRHHKAMHELDFDPYGFEWLVVDDKERSVLIFVRRDKEGNEIIVASNFTPV-PRHDYRFGIN 559 (617)
T ss_dssp HHHHHTTCGGGTSCTTSGGGEEEEEEEETTTTEEEEEEECTTCCEEEEEEECSSC-CEEEECCBCS
T ss_pred HHHHHhhCHHhhcCCCCCCCeEEEeccCCCCeEEEEEEEcCCCCEEEEEECCCCC-CccceEECCC
Confidence 999999999987642 133334567889999993 39999999996 7788999876
|
| >2e8y_A AMYX protein, pullulanase; multiple domain, beta-alpha-barrel, alpha-amylase-family, HY; 2.11A {Bacillus subtilis} PDB: 2e8z_A* 2e9b_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-52 Score=512.71 Aligned_cols=333 Identities=18% Similarity=0.185 Sum_probs=260.9
Q ss_pred cCcccChhhhhhhHhhccccCCCCCcccCeeecCceEEEEEccCCcEEEEEccCCCCccccccceecCCCeEEEEcCCCC
Q psy9003 747 AGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLLCFMHVVCAAGDFNNWNREEFAYKKLDFGKWELVLPPNP 826 (1276)
Q Consensus 747 ~~~~~~~e~l~~F~~~Y~~~G~~Gtp~G~~y~~D~a~FalwAP~A~~VsLvGDFN~wd~~~~pM~r~~~GVWsl~Ip~~~ 826 (1276)
+.++.++ .|++.|.+ .| |+|+++..++++|++|||+|++|+|+++++.|....++|.+...|+|++++|+..
T Consensus 88 ~~~~~~~----~~d~~~~y---~~-~lGa~~~~~~~~f~vwap~a~~V~l~~~~~~~~~~~~~m~~~~~g~w~~~v~~~~ 159 (718)
T 2e8y_A 88 GAVIRTA----AFDDEFYY---DG-ELGAVYTADHTVFKVWAPAATSAAVKLSHPNKSGRTFQMTRLEKGVYAVTVTGDL 159 (718)
T ss_dssp CGGGGSH----HHHHHHCC---CS-CCEEEECSSEEEEEEECTTCSEEEEEEECTTSCCEEEECEECGGGEEEEEEESCC
T ss_pred cceeccc----cchhhccc---CC-CCCCEEeCCcEEEEEECCCCCEEEEEEEcCCCcceEEeCccCCCCEEEEEECCCC
Confidence 4555555 66666666 34 8999999999999999999999999998888877789999888899999999775
Q ss_pred CCCcccCcccEEEEEEEEeCCeeeeecCCcceEeecCCCCCccccceeeCCCCCCCCCcCCCCCCCCCCceEEEEecCCc
Q psy9003 827 DGSCKLTHLSQVKLVVRNQHGHLLDRLSPWATYVTEPPVVGHAYEQRIWNPKPQDKHKWTSSKPKKPDNLKIYESHVGIC 906 (1276)
Q Consensus 827 ~G~~~i~hGs~YkYrV~~~dG~~~~~~DPYAkav~~~~~~s~v~~~~~~~p~~~~~y~W~~~rp~~~~d~vIYElHVr~f 906 (1276)
. |..|+|+|.. +|.+...+||||+++..++.++++++...+.|. +| ...+..+++++|||+|||+|
T Consensus 160 ~-------g~~Y~f~v~~-~g~~~~~~DPya~~~~~~~~~s~v~d~~~~~~~-----~w-~~~~~~~~~~viYei~v~~F 225 (718)
T 2e8y_A 160 H-------GYEYLFCICN-NSEWMETVDQYAKAVTVNGEKGVVLRPDQMKWT-----AP-LKPFSHPVDAVIYETHLRDF 225 (718)
T ss_dssp T-------TCEEEEEEEE-TTEEEEECCTTCSSBCGGGCSEECCCCCCCCCC-----CC-CCCCSCGGGCCEEEECHHHH
T ss_pred C-------CCeEEEEEEe-CCeEEEecCCcccccccCCCcceEEcccccCCc-----cc-CCCCCChhhcEEEEEehHHh
Confidence 5 4699999985 677778999999998877655655543223332 57 22223568999999999999
Q ss_pred ccc-----CccCcHHHHHHh----------hhhHHHHcCCCCCccceeecccccccccccccceeeccCccccccccccc
Q psy9003 907 TQE-----QKCASYEDFVRV----------VIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYA 971 (1276)
Q Consensus 907 t~~-----~~~Gtf~gl~ek----------~LdyLK~LGVna~d~wV~LmP~f~~eew~~~~pi~~l~~~Pi~E~~i~~~ 971 (1276)
+.. ..+|+|.|++++ .|||||+||||+ |||||+|++... .|.. +
T Consensus 226 ~~~~~~g~~~~G~~~g~~e~~~~~l~Gi~~~LdyLk~LGvta----I~L~Pi~~~~~~--------------de~~-~-- 284 (718)
T 2e8y_A 226 SIHENSGMINKGKYLALTETDTQTANGSSSGLAYVKELGVTH----VELLPVNDFAGV--------------DEEK-P-- 284 (718)
T ss_dssp HHSTTSCCSSTTSGGGGGCTTCBCTTSCBCHHHHHHHHTCSE----EEESCCEEESSS--------------CTTS-G--
T ss_pred cCCCCCCCCCCCCeeccccccccccccchhhhHHHHHcCCCE----EEECCccccCcc--------------cccc-c--
Confidence 842 245999999872 599999999999 999977753110 0000 0
Q ss_pred cCCCcccCCCccccccccccccccccCCCCCCcccccccccccCCCCCccccccccccCCCCC--CHHHHHHHHHHHHHc
Q psy9003 972 ESHDQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFG--TPEQLKYLVDECHKA 1049 (1276)
Q Consensus 972 ~S~~~~~WGYdp~nyf~~d~~~y~~~S~~~Dp~~~~dap~~~yas~s~hkYt~D~~~ID~~~G--t~eEfK~LV~alHk~ 1049 (1276)
...++|||+|.+|| +|+++|++. |.+| +++|||+||++||++
T Consensus 285 --~~~~~wGYd~~dy~---------------------a~~~~yg~~-------------p~~g~~~~~dfk~LV~~aH~~ 328 (718)
T 2e8y_A 285 --LDAYNWGYNPLHFF---------------------APEGSYASN-------------PHDPQTRKTELKQMINTLHQH 328 (718)
T ss_dssp --GGCCCCCCSEEEEE---------------------EECSTTSSC-------------SSSHHHHHHHHHHHHHHHHHT
T ss_pred --cccCcCCCCccCCC---------------------CcCcccccC-------------CCCccccHHHHHHHHHHHHHC
Confidence 01357999999999 667666642 4444 689999999999999
Q ss_pred CCEEEEEEeccccCCcccCCCcCCCCCCCc-ccccCCCCCCCCC--CCcCCCCCcHHHHHHHHHHHHHHHHhCCCcEEcc
Q psy9003 1050 GLYVLLDVVHSHASKNVLDGLNEFDGTQAC-FFHDGPRGTHPLW--DSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRF 1126 (1276)
Q Consensus 1050 GI~VILDvV~NHt~~~~~~~~~~f~g~~~~-Yy~~~~~g~~~~W--~g~~LN~~np~Vr~~Iidsl~~Wv~eygVDGFRf 1126 (1276)
||+||||+|+|||+.++. ..|++..+. ||+.+++|.+.++ .+++||++||+||++|+++++||++|||||||||
T Consensus 329 GI~VIlDvV~NHt~~~~~---~~f~~~~p~y~~~~~~~g~~~n~~~~g~dln~~np~Vr~~i~d~~~~Wl~e~gVDGfR~ 405 (718)
T 2e8y_A 329 GLRVILDVVFNHVYKREN---SPFEKTVPGYFFRHDECGKPSNGTGVGNDIASERRMARKFIADCVVYWLEEYNVDGFRF 405 (718)
T ss_dssp TCEEEEEECTTCCSSGGG---SHHHHHSTTTSBCBCTTSSBCCTTSSSCCBCTTSHHHHHHHHHHHHHHHHHHCCCEEEE
T ss_pred CCEEEEEEecccccCccc---ccccccCCCeEEecCCCCcccCCCCcccccccCCHHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 999999999999999863 234454454 4455556655443 3689999999999999999999999999999999
Q ss_pred CCccccccccCCCCCCCCCCCccccCCCCCchHHHHHHHHHHHHHhhCCCeEEEEEccCCC
Q psy9003 1127 DGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGM 1187 (1276)
Q Consensus 1127 D~a~~L~~~d~g~g~~~~~~~~~~~~~~~d~~a~~Fl~el~~~Vr~~~PdvilIAE~~s~~ 1187 (1276)
|++..+. ..||+++++.+++.+|++++|||.|...
T Consensus 406 D~~~~~~--------------------------~~~~~~~~~~~~~~~p~~~ligE~w~~~ 440 (718)
T 2e8y_A 406 DLLGILD--------------------------IDTVLYMKEKATKAKPGILLFGEGWDLA 440 (718)
T ss_dssp TTGGGSB--------------------------HHHHHHHHHHHHHHSTTCEEEECCCCCC
T ss_pred eccccCC--------------------------HHHHHHHHHHHHHhCCCeEEEEeecCCC
Confidence 9998772 3489999999999999999999998753
|
| >2wan_A Pullulanase; hydrolase, glycoside hydrolase, polysaccharide, amylase, starch, carbohydrate; 1.65A {Bacillus acidopullulyticus} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-52 Score=523.91 Aligned_cols=330 Identities=20% Similarity=0.254 Sum_probs=264.1
Q ss_pred CcccChhhhhhhHh-hccccCCCCCcccCeeecCceEEEEEccCCcEEEEEccCCCCc---cccccceecCCCeEEEEcC
Q psy9003 748 GLFGTPEQLKYLVD-ECHKAGLFGTPEQLKYLVDECHKAGLLCFMHVVCAAGDFNNWN---REEFAYKKLDFGKWELVLP 823 (1276)
Q Consensus 748 ~~~~~~e~l~~F~~-~Y~~~G~~Gtp~G~~y~~D~a~FalwAP~A~~VsLvGDFN~wd---~~~~pM~r~~~GVWsl~Ip 823 (1276)
+++... .|+. .|.+ .|.|+|+++..++++|+||||+|++|+|+. |++|+ ...++|.+...|+|++++|
T Consensus 299 ~~~~~~----~~d~~~~~y---~g~~lGa~~~~~gv~F~vwaP~A~~V~l~l-f~~~~~~~~~~~~m~~~~~gvW~~~v~ 370 (921)
T 2wan_A 299 NILPRN----VLNLPRYDY---SGNDLGNVYSKDATSFRVWAPTASNVQLLL-YNSEKGSITKQLEMQKSDNGTWKLQVS 370 (921)
T ss_dssp ECEECG----GGGSGGGCC---CCSCCEEEECSSEEEEEEECTTCSEEEEEE-ESSSSSCCSEEEECEECGGGEEEEEEE
T ss_pred ceeehh----hcccccccc---cCCCceeEEECCeEEEEEECCCCCEEEEEE-EeCCCCCcCeEEeCeeCCCCEEEEEEc
Confidence 455554 6666 6665 566999999999999999999999999996 88885 3579999888899999999
Q ss_pred CCCCCCcccCcccEEEEEEEEeCCeeeeecCCcceEeecCCCCCccccceeeCCCCCCCCCcCCCC-C--CCCCCceEEE
Q psy9003 824 PNPDGSCKLTHLSQVKLVVRNQHGHLLDRLSPWATYVTEPPVVGHAYEQRIWNPKPQDKHKWTSSK-P--KKPDNLKIYE 900 (1276)
Q Consensus 824 ~~~~G~~~i~hGs~YkYrV~~~dG~~~~~~DPYAkav~~~~~~s~v~~~~~~~p~~~~~y~W~~~r-p--~~~~d~vIYE 900 (1276)
+...| ..|+|+|.. +|....++||||+++..++..|++++...++| ++|+..+ | ++|++++|||
T Consensus 371 ~~~~g-------~~Y~y~v~~-~g~~~~~~DPya~~~~~~~~~s~v~d~~~~~~-----~~W~~~~~p~~~~~~~~vIYE 437 (921)
T 2wan_A 371 GNLEN-------WYYLYQVTV-NGTTQTAVDPYARAISVNATRGMIVDLKATDP-----AGWQGDHEQTPANPVDEVIYE 437 (921)
T ss_dssp SCCTT-------CEEEEEEEC-SSCEEEECCTTCSSBSGGGSSEECCCGGGGSC-----TTGGGCCCCCCSSGGGCCEEE
T ss_pred cCCCC-------CEEEEEEEe-CCeEEEecCCcceeeccCCCceEEEcccccCc-----cccccccCCCCCCchhcEEEE
Confidence 87654 699999985 57777899999999887766666555333333 5897653 3 2468999999
Q ss_pred EecCCcccc-----CccCcHHHHHHh----------hhhHHHHcCCCCCccceeecccccccccccccceeeccCccccc
Q psy9003 901 SHVGICTQE-----QKCASYEDFVRV----------VIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYME 965 (1276)
Q Consensus 901 lHVr~ft~~-----~~~Gtf~gl~ek----------~LdyLK~LGVna~d~wV~LmP~f~~eew~~~~pi~~l~~~Pi~E 965 (1276)
+|||+|+.. ..+|+|.|++++ .|||||+||||+ |||||+|++... .+
T Consensus 438 ihv~~F~~~~~~g~~~~Gt~~g~~e~~~~~l~Gi~~~LdyLk~LGvta----I~L~Pi~e~~~~--------------de 499 (921)
T 2wan_A 438 AHVRDFSIDANSGMKNKGKYLAFTEHGTKGPDHVKTGIDSLKELGITT----VQLQPVEEFNSI--------------DE 499 (921)
T ss_dssp ECHHHHHCSTTSCCSSTTSGGGGGCCSCBCGGGCBCHHHHHHHHTCCE----EEESCCEEESSS--------------CT
T ss_pred EEcCcccCCCCCCCCCCCCeeheeccccccccccchhhHHHHHcCCCE----EEeCCccccCcc--------------cc
Confidence 999999842 246999999873 599999999999 999976653110 00
Q ss_pred cccccccCCCcccCCCccccccccccccccccCCCCCCcccccccccccCCCCCccccccccccCCCCCC--HHHHHHHH
Q psy9003 966 KTVAYAESHDQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGT--PEQLKYLV 1043 (1276)
Q Consensus 966 ~~i~~~~S~~~~~WGYdp~nyf~~d~~~y~~~S~~~Dp~~~~dap~~~yas~s~hkYt~D~~~ID~~~Gt--~eEfK~LV 1043 (1276)
. ....++|||+|.+|| +|+++|++ || +|+ ++|||+||
T Consensus 500 ~------~~~~~~wGYd~~dy~---------------------ap~~~y~~-------------dp-~Gt~~~~dfk~LV 538 (921)
T 2wan_A 500 T------QPDTYNWGYDPRNYN---------------------VPEGAYAT-------------TP-EGTARITELKQLI 538 (921)
T ss_dssp T------STTSCCCCCSEEEEE---------------------EECGGGSS-------------CS-STTHHHHHHHHHH
T ss_pred c------ccCcCCcCCCCcCCC---------------------CCCccccc-------------CC-CCCccHHHHHHHH
Confidence 0 001467999999999 77766664 47 999 89999999
Q ss_pred HHHHHcCCEEEEEEeccccCCcccCCCcCCCCCCC-cccccCCCCCCCCCC--CcCCCCCcHHHHHHHHHHHHHHHHhCC
Q psy9003 1044 DECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQA-CFFHDGPRGTHPLWD--SRLFNYSEIEVLRFLLSNLRWYLDEYQ 1120 (1276)
Q Consensus 1044 ~alHk~GI~VILDvV~NHt~~~~~~~~~~f~g~~~-~Yy~~~~~g~~~~W~--g~~LN~~np~Vr~~Iidsl~~Wv~eyg 1120 (1276)
++||++||+||||+|+||++.++. ..|++..+ +||+.++++.+.+|. +++||++||+||++|+++++||++|||
T Consensus 539 ~~aH~~GI~VILDvV~NHt~~~~~---~~f~~~~p~y~~~~~~~g~~~~~~g~~~dln~~~p~Vr~~i~d~l~~Wl~e~g 615 (921)
T 2wan_A 539 QSLHQQRIGVNMDVVYNHTFDVMV---SDFDKIVPQYYYRTDSNGNYTNGSGCGNEFATEHPMAQKFVLDSVNYWVNEYH 615 (921)
T ss_dssp HHHHHTTCEEEEEECTTCCSCSSS---SHHHHHSTTTTBCBCTTSCBCCTTSSSCCBCTTSHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHcCCEEEEEEcccccccccc---ccccCCCCCeEEEcCCCCcccCCCCcccccccCCHHHHHHHHHHHHHHHHHcC
Confidence 999999999999999999999863 24555555 445556667665554 578999999999999999999999999
Q ss_pred CcEEccCCccccccccCCCCCCCCCCCccccCCCCCchHHHHHHHHHHHHHhhCCCeEEEEEccCC
Q psy9003 1121 FDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSG 1186 (1276)
Q Consensus 1121 VDGFRfD~a~~L~~~d~g~g~~~~~~~~~~~~~~~d~~a~~Fl~el~~~Vr~~~PdvilIAE~~s~ 1186 (1276)
|||||||+|..+. ..||+++++.+++.+|++++|||.|..
T Consensus 616 VDGfR~Da~~~~~--------------------------~~~~~~~~~~l~~~~p~~~ligE~w~~ 655 (921)
T 2wan_A 616 VDGFRFDLMALLG--------------------------KDTMAKISNELHAINPGIVLYGEPWTG 655 (921)
T ss_dssp CCEEEETTGGGGC--------------------------HHHHHHHHHHHHHHCTTCEEEECSSCS
T ss_pred CCEEEeccccccC--------------------------HHHHHHHHHHHHHhCCceEEEEecccC
Confidence 9999999998762 358999999999999999999999864
|
| >3vgf_A Malto-oligosyltrehalose trehalohydrolase; alpha/beta barrel, alpha-amylas hydrolase; HET: GLC FLC; 2.30A {Sulfolobus solfataricus} PDB: 3vge_A* 3vgd_A* 3vgb_A* 1eh9_A* 3vgh_A* 3vgg_A* 1eha_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-49 Score=479.17 Aligned_cols=303 Identities=23% Similarity=0.298 Sum_probs=242.6
Q ss_pred ccCeeecCceEEEEEccCCcEEEEEccCCCCccccccceecCCCeEEEEcCCCCCCCcccCcccEEEEEEEEeCCeeeee
Q psy9003 773 EQLKYLVDECHKAGLLCFMHVVCAAGDFNNWNREEFAYKKLDFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHGHLLDR 852 (1276)
Q Consensus 773 ~G~~y~~D~a~FalwAP~A~~VsLvGDFN~wd~~~~pM~r~~~GVWsl~Ip~~~~G~~~i~hGs~YkYrV~~~dG~~~~~ 852 (1276)
+|+++..++++|++|||+|++|+|+++++ ..++|.+.+.|+|++++|+...| ..|+|+|. |. ..+
T Consensus 2 lG~~~~~~~~~f~vwap~a~~v~l~~~~~----~~~~m~~~~~g~w~~~~~~~~~g-------~~Y~~~~~---~~-~~~ 66 (558)
T 3vgf_A 2 FAYKIDGNEVIFTLWAPYQKSVKLKVLEK----GLYEMERDEKGYFTITLNNVKVR-------DRYKYVLD---DA-SEI 66 (558)
T ss_dssp -CEEEETTEEEEEEECTTCSCCEEEETTT----EEEECEECTTCEEEEEESSCCTT-------CEEEEECT---TS-CEE
T ss_pred CCeEEeCCcEEEEEECCCCCEEEEEEecC----ceeecccCCCCEEEEEECCCCCC-------CEEEEEEe---CC-ccc
Confidence 68889999999999999999999998776 67999998899999999987665 69999994 44 458
Q ss_pred cCCcceEeecCCCCCccccceeeCCCCCCCCCcCCCCCCCCCCceEEEEecCCccccCccCcHHHHHHhhhhHHHHcCCC
Q psy9003 853 LSPWATYVTEPPVVGHAYEQRIWNPKPQDKHKWTSSKPKKPDNLKIYESHVGICTQEQKCASYEDFVRVVIPRIVKQGMA 932 (1276)
Q Consensus 853 ~DPYAkav~~~~~~s~v~~~~~~~p~~~~~y~W~~~rp~~~~d~vIYElHVr~ft~~~~~Gtf~gl~ek~LdyLK~LGVn 932 (1276)
+||||+..... +...+.+++|. |+|.+..++.+++++|||+|||+|++ .|+|++++++ ||||++||||
T Consensus 67 ~DP~~~~~~~~----~~~~s~v~d~~----~~w~~~~~~~~~~~~iYe~~~~~f~~---~G~~~~~~~~-l~~l~~lG~~ 134 (558)
T 3vgf_A 67 PDPASRYQPEG----VHGPSQIIQES----KEFNNETFLKKEDLIIYEIHVGTFTP---EGTFEGVIRK-LDYLKDLGIT 134 (558)
T ss_dssp CCTTCSCCTTC----TTSCEECCCCC----CCCCSSCCCCGGGCCEEEECHHHHSS---SCSHHHHHHT-HHHHHHHTCC
T ss_pred cCcchhhcccC----CCCcccccCCC----cCcccccCCCccccEEEEEeHHHhCC---CCCHHHHHHH-HHHHHHcCCc
Confidence 99999864321 11124455553 89987765566899999999999986 4899999986 9999999999
Q ss_pred CCccceeecccccccccccccceeeccCccccccccccccCCCcccCCCccccccccccccccccCCCCCCccccccccc
Q psy9003 933 IPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAESHDQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACE 1012 (1276)
Q Consensus 933 a~d~wV~LmP~f~~eew~~~~pi~~l~~~Pi~E~~i~~~~S~~~~~WGYdp~nyf~~d~~~y~~~S~~~Dp~~~~dap~~ 1012 (1276)
+ |||||++ +. + ...+|||+|.+|| +++
T Consensus 135 ~----v~l~Pi~--------------------~~--~-----~~~~~GY~~~~~~---------------------~~~- 161 (558)
T 3vgf_A 135 A----IEIMPIA--------------------QF--P-----GKRDWGYDGVYLY---------------------AVQ- 161 (558)
T ss_dssp E----EEECCCE--------------------EC--S-----SSCCCSTTCCEEE---------------------EEC-
T ss_pred E----EEECCcc--------------------cC--C-----CCCCcCccccccc---------------------ccc-
Confidence 9 9999443 32 1 2356999999999 565
Q ss_pred ccCCCCCccccccccccCCCCCCHHHHHHHHHHHHHcCCEEEEEEeccccCCcccCCCcCCCCCCCcccccCCCCCCCCC
Q psy9003 1013 KFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLW 1092 (1276)
Q Consensus 1013 ~yas~s~hkYt~D~~~ID~~~Gt~eEfK~LV~alHk~GI~VILDvV~NHt~~~~~~~~~~f~g~~~~Yy~~~~~g~~~~W 1092 (1276)
|+||+++|||+||++||++||+||||+|+||++.++.+. ...+.||... ....|
T Consensus 162 ------------------~~~Gt~~d~~~lv~~~h~~Gi~VilD~V~NH~~~~~~~~-----~~~~~~~~~~---~~~~~ 215 (558)
T 3vgf_A 162 ------------------NSYGGPEGFRKLVDEAHKKGLGVILDVVYNHVGPEGNYM-----VKLGPYFSQK---YKTPW 215 (558)
T ss_dssp ------------------GGGTHHHHHHHHHHHHHHTTCEEEEEECCSCCCSSSCCG-----GGTSCCEEEE---EEETT
T ss_pred ------------------cccCCHHHHHHHHHHHHHcCCEEEEEEeeccccCCCCcc-----cccCCccCCC---CCCCC
Confidence 889999999999999999999999999999999876432 1123455321 12345
Q ss_pred CCcCCC---CCcHHHHHHHHHHHHHHHHhCCCcEEccCCccccccccCCCCCCCCCCCccccCCCCCchHHHHHHHHHHH
Q psy9003 1093 DSRLFN---YSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKF 1169 (1276)
Q Consensus 1093 ~g~~LN---~~np~Vr~~Iidsl~~Wv~eygVDGFRfD~a~~L~~~d~g~g~~~~~~~~~~~~~~~d~~a~~Fl~el~~~ 1169 (1276)
+. .+| +.+|+||++|++++++|+++|||||||||++..|.. .++..||+++++.
T Consensus 216 g~-~~n~~~~~~~~v~~~l~~~~~~w~~~~gvDGfR~D~~~~~~~----------------------~~~~~f~~~l~~~ 272 (558)
T 3vgf_A 216 GL-TFNFDDAESDEVRKFILENVEYWIKEYNVDGFRLSAVHAIID----------------------TSPKHILEEIADV 272 (558)
T ss_dssp EE-EECSSSTTHHHHHHHHHHHHHHHHHHHCCCEEEESCGGGCCC----------------------CSSSCHHHHHHHH
T ss_pred CC-cccCCCCCCHHHHHHHHHHHHHHHHHhCCCEEEEeccccccc----------------------ccHHHHHHHHHHH
Confidence 42 334 458999999999999999999999999999998831 1234599999999
Q ss_pred HHhhCCCeEEEEEccCCCCCCccccccCCcccCcccC
Q psy9003 1170 LHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDYRLV 1206 (1276)
Q Consensus 1170 Vr~~~PdvilIAE~~s~~p~~~~p~~~gglGFD~~~n 1206 (1276)
+++.. +++|||.|.+.|..++|+..+|.|||+.|+
T Consensus 273 ~~~~~--~~~iaE~~~~~~~~~~~~~~~g~g~d~~~~ 307 (558)
T 3vgf_A 273 VHKYN--RIVIAESDLNDPRVVNPKEKCGYNIDAQWV 307 (558)
T ss_dssp HHHTT--CEEEEECSSCCGGGTSCGGGTCCCCSEEEC
T ss_pred HhhcC--EEEEEecCCCCcceeccccCCCCceeeEEc
Confidence 99886 999999999999999988888888887764
|
| >2ya0_A Putative alkaline amylopullulanase; hydrolase, glycoside hydrolase; 1.85A {Streptococcus pneumoniae} PDB: 2ya2_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-49 Score=485.63 Aligned_cols=346 Identities=19% Similarity=0.247 Sum_probs=250.9
Q ss_pred hhHhhccccCCCCCcccCeeecCc--eEEEEEccCCcEEEEEc-cCCCCcc--ccccceecCCCeEEEEcCCCC-CCCcc
Q psy9003 758 YLVDECHKAGLFGTPEQLKYLVDE--CHKAGLLCFMHVVCAAG-DFNNWNR--EEFAYKKLDFGKWELVLPPNP-DGSCK 831 (1276)
Q Consensus 758 ~F~~~Y~~~G~~Gtp~G~~y~~D~--a~FalwAP~A~~VsLvG-DFN~wd~--~~~pM~r~~~GVWsl~Ip~~~-~G~~~ 831 (1276)
-+++.|.+ .| |+|+++..++ ++|+||||+|++|+|++ ++++|+. .+++|.+...|+|++++|+.. .| ..
T Consensus 4 ~~d~~~~y---~~-~lGa~~~~~g~gv~F~vwap~A~~V~l~l~~~~~~~~~~~~~~m~~~~~gvW~~~v~~~~~~g-~~ 78 (714)
T 2ya0_A 4 LKDETYSY---DG-KLGADLKEEGKQVDLTLWSPSADKVSVVVYDKNDPDKVVGTVALEKGERGTWKQTLDSTNKLG-IT 78 (714)
T ss_dssp HHHHHHCC---CS-CCEEEEETTTTEEEEEEECTTCSEEEEEEECSSCTTSEEEEEECEECGGGEEEEEECTTCSSS-CS
T ss_pred cccccccC---CC-CCCCEEeCCCCEEEEEEECCCCCEEEEEEEeCCCCCccceEEeCccCCCCEEEEEECCccCCC-cc
Confidence 34555555 33 7898988776 89999999999999997 7877753 479999888899999998632 22 01
Q ss_pred cCcccEEEEEEEEeCCeeeeecCCcceEeecCCC-------CCccccceeeCCCCC--CCCCcCCCCC-CCCCCceEEEE
Q psy9003 832 LTHLSQVKLVVRNQHGHLLDRLSPWATYVTEPPV-------VGHAYEQRIWNPKPQ--DKHKWTSSKP-KKPDNLKIYES 901 (1276)
Q Consensus 832 i~hGs~YkYrV~~~dG~~~~~~DPYAkav~~~~~-------~s~v~~~~~~~p~~~--~~y~W~~~rp-~~~~d~vIYEl 901 (1276)
...|..|+|+|.. +|.....+||||+++..... .+....+.+++|... ..++|....+ ..+++++|||+
T Consensus 79 ~~~g~~Y~y~v~~-~~~~~~~~DPya~~~~~~~~~~~~~~~~~~~~~~~vvd~~~~~~~~~~~~~~~~~~~~~~~viYE~ 157 (714)
T 2ya0_A 79 DFTGYYYQYQIER-QGKTVLALDPYAKSLAAWNSDDSKIDDAHKVAKAAFVDPAKLGPQDLTYGKIHNFKTREDAVIYEA 157 (714)
T ss_dssp CCTTCEEEEEEEE-TTEEEEECCTTCSEECCCBGGGTTSCGGGSSCCEECCCGGGSSCTTCCCCCCTTCSSGGGCCEEEE
T ss_pred ccCCcEEEEEEEe-CCceEEecCCceeeeccCchhccccCccccCCcEEEEcccccCcccccccccCCCCCccccEEEEE
Confidence 2367899999974 56666789999999865211 011222344444311 1234443222 24689999999
Q ss_pred ecCCcccc--------CccCcHHHHHHhhhhHHHHcCCCCCccceeecccccccccccccceeeccCccccccccccccC
Q psy9003 902 HVGICTQE--------QKCASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAES 973 (1276)
Q Consensus 902 HVr~ft~~--------~~~Gtf~gl~ek~LdyLK~LGVna~d~wV~LmP~f~~eew~~~~pi~~l~~~Pi~E~~i~~~~S 973 (1276)
|||+|+.. ...|||+|++++ |||||+||||+ |||||++++...+ .. ...+....+..+
T Consensus 158 hv~~f~~~~~~~~~~~~~~Gt~~gi~~~-L~yLk~LGvt~----I~L~Pi~~~~~~~------e~---~~~~~~~~~~~~ 223 (714)
T 2ya0_A 158 HVRDFTSDPAIAKDLTKPFGTFEAFIEK-LDYLKDLGVTH----IQLLPVLSYYFVN------EL---KNHERLSDYASS 223 (714)
T ss_dssp CHHHHHCCGGGTTTCSSCTTSHHHHHTT-HHHHHHHTCSE----EEESCCBCBSSCB------GG---GTTSCCCSCCSS
T ss_pred EehhhccCCCCccccccCCcCHHHHHHH-hHHHHHcCCCE----EEECCcccccccC------cc---cccccccccccC
Confidence 99999853 225999999996 99999999999 9999888741100 00 000000011112
Q ss_pred CCcccCCCccccccccccccccccCCCCCCcccccccccccCCCCCccccccccccCCCCCCHHHHHHHHHHHHHcCCEE
Q psy9003 974 HDQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLYV 1053 (1276)
Q Consensus 974 ~~~~~WGYdp~nyf~~d~~~y~~~S~~~Dp~~~~dap~~~yas~s~hkYt~D~~~ID~~~Gt~eEfK~LV~alHk~GI~V 1053 (1276)
...++|||+|.+|| +|+++|++... .+.++++|||+||++||++||+|
T Consensus 224 ~~~~~wGY~~~~~~---------------------a~~~~yg~~~~-----------~~~~~~~efk~lV~~~H~~Gi~V 271 (714)
T 2ya0_A 224 NSNYNWGYDPQNYF---------------------SLTGMYSSDPK-----------NPEKRIAEFKNLINEIHKRGMGA 271 (714)
T ss_dssp SCSCCCSCSBSCSS---------------------SBCSTTSSCTT-----------STTHHHHHHHHHHHHHHHTTCEE
T ss_pred cCcCccCCCCccCc---------------------ccChhhccCCC-----------CccchHHHHHHHHHHHHHCCCEE
Confidence 23457999999999 67766665310 12235899999999999999999
Q ss_pred EEEEeccccCCcccCCCcCCCCCCCccccc-CCCCC-CCCCCCcCCCCCcHHHHHHHHHHHHHHHHhCCCcEEccCCccc
Q psy9003 1054 LLDVVHSHASKNVLDGLNEFDGTQACFFHD-GPRGT-HPLWDSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTS 1131 (1276)
Q Consensus 1054 ILDvV~NHt~~~~~~~~~~f~g~~~~Yy~~-~~~g~-~~~W~g~~LN~~np~Vr~~Iidsl~~Wv~eygVDGFRfD~a~~ 1131 (1276)
|||||+||++.++ .|.+..+.||+. +.++. ..+|+++++|+++|+||++|+++++||++||||||||||+|+.
T Consensus 272 ilDvV~NH~~~~~-----~~~~~~~~yy~~~~~~g~~~~~~~~~~l~~~~~~v~~~i~d~l~~W~~e~~vDGfR~D~~~~ 346 (714)
T 2ya0_A 272 ILDVVYNHTAKVD-----LFEDLEPNYYHFMDADGTPRTSFGGGRLGTTHHMTKRLLIDSIKYLVDTYKVDGFRFDMMGD 346 (714)
T ss_dssp EEEECTTBCSCHH-----HHHTTSTTTSBCBCTTCCBCEETTEEBBCTTSHHHHHHHHHHHHHHHHHHCCCEEEETTGGG
T ss_pred EEEeccCcccCcc-----cccccCCCeeEEeCCCCCCccccCCCCcccCCHHHHHHHHHHHHHHHHhhCceEEEEeCCCC
Confidence 9999999999875 355566666653 44443 3467788999999999999999999999999999999999875
Q ss_pred cccccCCCCCCCCCCCccccCCCCCchHHHHHHHHHHHHHhhCCCeEEEEEccCC
Q psy9003 1132 MLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSG 1186 (1276)
Q Consensus 1132 L~~~d~g~g~~~~~~~~~~~~~~~d~~a~~Fl~el~~~Vr~~~PdvilIAE~~s~ 1186 (1276)
+ ...+|+.++..+++.+|++++|||.|..
T Consensus 347 ~--------------------------~~~~~~~~~~~~~~~~p~~~ligE~w~~ 375 (714)
T 2ya0_A 347 H--------------------------DAASIEEAYKAARALNPNLIMLGEGWRT 375 (714)
T ss_dssp S--------------------------BHHHHHHHHHHHHHHCTTCEEEECCCSC
T ss_pred C--------------------------CHHHHHHHHHHHHHhCCCeEEEeccccc
Confidence 4 1348888999999999999999999874
|
| >2wsk_A Glycogen debranching enzyme; carbohydrate metabolism, hydrolase, glycosidase, ISO-amylase glycosyl hydrolase, glycogen metabolism; 2.25A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-49 Score=484.78 Aligned_cols=328 Identities=19% Similarity=0.231 Sum_probs=247.3
Q ss_pred CcccCeeecCceEEEEEccCCcEEEEEccCCCCcc-ccccceecCCCeEEEEcCCCCCCCcccCcccEEEEEEEE----e
Q psy9003 771 TPEQLKYLVDECHKAGLLCFMHVVCAAGDFNNWNR-EEFAYKKLDFGKWELVLPPNPDGSCKLTHLSQVKLVVRN----Q 845 (1276)
Q Consensus 771 tp~G~~y~~D~a~FalwAP~A~~VsLvGDFN~wd~-~~~pM~r~~~GVWsl~Ip~~~~G~~~i~hGs~YkYrV~~----~ 845 (1276)
.|+|+++..++++|+||||+|++|+|++ |+.+.. ..++|.+..+|+|++++|+...| ..|+|+|.+ .
T Consensus 10 ~~lGa~~~~~g~~F~vwap~A~~V~l~~-f~~~~~~~~~~m~~~~~g~w~~~v~~~~~g-------~~Y~y~v~~~~~p~ 81 (657)
T 2wsk_A 10 APLGAHYDGQGVNFTLFSAHAERVELCV-FDANGQEHRYDLPGHSGDIWHGYLPDARPG-------LRYGYRVHGPWQPA 81 (657)
T ss_dssp CSSSEEECSSEEEEEEECSSCSEEEEEE-ECTTCCEEEEECCEEETTEEEEEEETCCTT-------CEEEEEEECCCCGG
T ss_pred CCCCcEEeCCeEEEEEECCCCCEEEEEE-ECCCCCEEEEeCcCCCCCEEEEEECCCCCC-------CEEEEEEeeeecCc
Confidence 5788888888999999999999999997 765322 57899887889999999987655 699999987 3
Q ss_pred CCeee----eecCCcceEeecCCCCCcc-----------------ccceeeCCCCCCCCCcCCCCCC--CCCCceEEEEe
Q psy9003 846 HGHLL----DRLSPWATYVTEPPVVGHA-----------------YEQRIWNPKPQDKHKWTSSKPK--KPDNLKIYESH 902 (1276)
Q Consensus 846 dG~~~----~~~DPYAkav~~~~~~s~v-----------------~~~~~~~p~~~~~y~W~~~rp~--~~~d~vIYElH 902 (1276)
+|.++ .++||||+++..+..++.. ..+.+++| .|+|++++++ ++++++|||+|
T Consensus 82 ~g~~~~~~~~~~DPya~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~v~d~----~~~W~~~~~~~~~~~~~vIYei~ 157 (657)
T 2wsk_A 82 EGHRFNPAKLLIDPCARQIDGEFKDNPLLHAGHNEPDYRDNAAIAPKCVVVVD----HYDWEDDAPPRTPWGSTIIYEAH 157 (657)
T ss_dssp GTCCCCTTSCBCCTTCSCEESCCCCCGGGBCCSSSCCCCCCGGGSCEEECCCC----CCCCTTCCCCCCCGGGCCEEEEC
T ss_pred cCcccccceEEcCcCcceecCCccccccccccccccccccccccccceEEeCC----CCCCCCCCCCCCCchhcEEEEEE
Confidence 56654 6899999999876432211 12344554 3899987653 56899999999
Q ss_pred cCCcccc------CccCcHHHHHHh-hhhHHHHcCCCCCccceeecccccccccccccceeeccCccccccccccccCCC
Q psy9003 903 VGICTQE------QKCASYEDFVRV-VIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAESHD 975 (1276)
Q Consensus 903 Vr~ft~~------~~~Gtf~gl~ek-~LdyLK~LGVna~d~wV~LmP~f~~eew~~~~pi~~l~~~Pi~E~~i~~~~S~~ 975 (1276)
||+|+.. ...|+|+|++++ .|||||+||||+ |||||++++..- ....+ . ..
T Consensus 158 v~~F~~~~~~~~~~~~G~~~gi~~~~~l~yL~~LGvt~----i~L~Pi~~~~~~-----------~~~~~-----~--g~ 215 (657)
T 2wsk_A 158 VKGLTYLHPEIPVEIRGTYKALGHPVMINYLKQLGITA----LELLPVAQFASE-----------PRLQR-----M--GL 215 (657)
T ss_dssp HHHHHTTCTTSCGGGTTSHHHHTSHHHHHHHHHHTCCE----EEESCCEEECCC-----------HHHHT-----T--TC
T ss_pred cceeeccCCCCCccCCcCHHHHhcccchHHHHHcCCCE----EEECCccccCcc-----------ccccc-----c--cc
Confidence 9999852 258999999984 599999999999 999977753110 00000 0 12
Q ss_pred cccCCCccccccccccccccccCCCCCCcccccccccccCCCCCccccccccccCCCCCCHHHHHHHHHHHHHcCCEEEE
Q psy9003 976 QALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLYVLL 1055 (1276)
Q Consensus 976 ~~~WGYdp~nyf~~d~~~y~~~S~~~Dp~~~~dap~~~yas~s~hkYt~D~~~ID~~~Gt~eEfK~LV~alHk~GI~VIL 1055 (1276)
.++|||++.+|| +|+++|++. |. ++++|||+||++||++||+|||
T Consensus 216 ~~~wGY~~~~y~---------------------~~~~~~G~~-------------p~-~~~~d~~~lv~~~H~~Gi~Vil 260 (657)
T 2wsk_A 216 SNYWGYNPVAMF---------------------ALHPAYACS-------------PE-TALDEFRDAIKALHKAGIEVIL 260 (657)
T ss_dssp CCSSCCCEEEEE---------------------EECGGGCSS-------------GG-GHHHHHHHHHHHHHHTTCEEEE
T ss_pred ccccCcCcccCC---------------------CCCHHHcCC-------------CC-cCHHHHHHHHHHHHHCCCEEEE
Confidence 467999999999 666444421 11 3689999999999999999999
Q ss_pred EEeccccCCcccCCC-cCCCCCC-CcccccCCCCCCCCCC--CcCCCCCcHHHHHHHHHHHHHHHHhCCCcEEccCCccc
Q psy9003 1056 DVVHSHASKNVLDGL-NEFDGTQ-ACFFHDGPRGTHPLWD--SRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTS 1131 (1276)
Q Consensus 1056 DvV~NHt~~~~~~~~-~~f~g~~-~~Yy~~~~~g~~~~W~--g~~LN~~np~Vr~~Iidsl~~Wv~eygVDGFRfD~a~~ 1131 (1276)
|+|+||++.++.++. .+|.+.+ +.||+.++++.+.+|. +++||+++|+||++|+++++||++||||||||||+|..
T Consensus 261 D~V~NH~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~ln~~~p~v~~~i~d~~~~W~~e~gvDGfR~D~~~~ 340 (657)
T 2wsk_A 261 DIVLNHSAELDLDGPLFSLRGIDNRSYYWIREDGDYHNWTGCGNTLNLSHPAVVDYASACLRYWVETCHVDGFRFDLAAV 340 (657)
T ss_dssp EECCSCCTTCSTTSBCCSHHHHHHHHHBCBCTTSSBCCSSSSSCCBCTTSHHHHHHHHHHHHHHHHTTCCCEEEETTTHH
T ss_pred EEeecccccccccCccccccCCCCccceEECCCCCeeCCCCcCCcccCCCHHHHHHHHHHHHHHHHHhCCcEEEEecccc
Confidence 999999999887653 2344433 3677766555555554 47999999999999999999999999999999999998
Q ss_pred cccccCCCCCCCCCCCccccCCCCCchHHHHHHHHHHHHHhhCCCeEEEEEccCCC
Q psy9003 1132 MLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGM 1187 (1276)
Q Consensus 1132 L~~~d~g~g~~~~~~~~~~~~~~~d~~a~~Fl~el~~~Vr~~~PdvilIAE~~s~~ 1187 (1276)
|.... +|. +...|++++++ ....|++++|||.|...
T Consensus 341 l~~~~-----~~~-------------~~~~~~~~i~~--~~~~~~~~liaE~w~~~ 376 (657)
T 2wsk_A 341 MGRTP-----EFR-------------QDAPLFTAIQN--CPVLSQVKLIAEPWDIA 376 (657)
T ss_dssp HHBSS-----SBC-------------TTCHHHHHHHH--CTTGGGSEEEECCBCSS
T ss_pred ccccc-----ccc-------------hhHHHHHHHHh--CcccCCcEEEEccccCC
Confidence 84220 111 12347777765 25678999999998643
|
| >3faw_A Reticulocyte binding protein; TIM barrel, beta barrel, hydrolase, cell WALL, peptidoglycan-anchor, secreted; 2.10A {Streptococcus agalactiae COH1} PDB: 3fax_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-48 Score=486.30 Aligned_cols=343 Identities=20% Similarity=0.217 Sum_probs=255.3
Q ss_pred hhhhhHhhccccCCCCCcccCeeecCc--eEEEEEccCCcEEEEEc-cCCCCcc--ccccceecCCCeEEEEcCCCCCCC
Q psy9003 755 QLKYLVDECHKAGLFGTPEQLKYLVDE--CHKAGLLCFMHVVCAAG-DFNNWNR--EEFAYKKLDFGKWELVLPPNPDGS 829 (1276)
Q Consensus 755 ~l~~F~~~Y~~~G~~Gtp~G~~y~~D~--a~FalwAP~A~~VsLvG-DFN~wd~--~~~pM~r~~~GVWsl~Ip~~~~G~ 829 (1276)
....|++.|.+ .| |+|+++..++ ++|+||||+|++|+|+. |++.|+. .+++|.+..+|+|+++++. ..|.
T Consensus 121 ~~~~~d~~~~y---~g-~lGa~~~~~g~~v~F~vwAP~A~~V~L~l~d~~~~~~~~~~~~m~~~~~gvW~~~v~~-~~G~ 195 (877)
T 3faw_A 121 SWEFKDQLYAY---SG-NLGAVLNQDGSKVEASLWSPSADSVTMIIYDKDNQNRVVATTPLVKNNKGVWQTILDT-KLGI 195 (877)
T ss_dssp CHHHHHHHHCC---CS-CCEEEECTTSSCEEEEEECTTCSEEEEEEEETTEEEEEEEEEECEECTTSEEEEEECG-GGTC
T ss_pred cceeehhhcCC---CC-CCCCEEeCCCCEEEEEEECCCCCEEEEEEEeCCCCccceeeeccccCCCCEEEEEECC-CCCC
Confidence 45577777755 34 8999999988 89999999999999984 6666642 4789998889999999952 1120
Q ss_pred cccCcccEEEEEEEEeCCeeeeecCCcceEeecCCC--CC---ccccceeeCCCCCCCCCcCC----CCC--CCCCCceE
Q psy9003 830 CKLTHLSQVKLVVRNQHGHLLDRLSPWATYVTEPPV--VG---HAYEQRIWNPKPQDKHKWTS----SKP--KKPDNLKI 898 (1276)
Q Consensus 830 ~~i~hGs~YkYrV~~~dG~~~~~~DPYAkav~~~~~--~s---~v~~~~~~~p~~~~~y~W~~----~rp--~~~~d~vI 898 (1276)
....|.+|+|+|.. .|.....+||||+++..... .+ ....+.+++|. .++|.+ ..| ..+++++|
T Consensus 196 -~~~~g~~Y~yrv~~-~~~~~~~~DPYA~~~~~~~~~~~~~~~~~~~s~vvd~~---~~~~~~~~~~~~p~~~~~~~~vI 270 (877)
T 3faw_A 196 -KNYTGYYYLYEIKR-GKDKVKILDPYAKSLAEWDSNTVNDDIKTAKAAFVNPS---QLGPQNLSFAKIANFKGRQDAVI 270 (877)
T ss_dssp -SCCTTCEEEEEEEE-TTEEEEECCTTCSCBCCCBGGGCCSSCCSCCEECCCGG---GSSCTTCCCCCCTTCCSGGGCEE
T ss_pred -ccCCCeEEEEEEee-CCceeEecCccceeccccCcccccccccCCceEEeccc---ccCCCccccccCCCCCCccccEE
Confidence 12357899999974 46677899999999864211 00 01123344442 233432 122 24688999
Q ss_pred EEEecCCcccc--------CccCcHHHHHHhhhhHHHHcCCCCCccceeecccccccccccccceeeccCcccccccccc
Q psy9003 899 YESHVGICTQE--------QKCASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAY 970 (1276)
Q Consensus 899 YElHVr~ft~~--------~~~Gtf~gl~ek~LdyLK~LGVna~d~wV~LmP~f~~eew~~~~pi~~l~~~Pi~E~~i~~ 970 (1276)
||+|||+|+.. ..+|||++++++ ||||++||||+ |||||++++...+-... ... +.
T Consensus 271 YElhvr~ft~~~~~~~~~~~~~Gt~~gl~~~-L~yLk~LGvta----V~L~Pi~~~~~~~e~~~------~~~-----~~ 334 (877)
T 3faw_A 271 YEAHVRDFTSDQSLDGKLKNQLGTFAAFSEK-LDYLQKLGVTH----IQLLPVLSYFYVNEMDK------SRS-----TA 334 (877)
T ss_dssp EEECTTGGGCCGGGTTTCSSCTTSHHHHGGG-HHHHHHHTCSE----EEESCCBCBSSCBTTCC------CCC-----CS
T ss_pred EEEEchHhcCCCCCCccccCCCCCHHHHHHH-HHHHHHcCCCE----EEEcchhcccccccccc------ccc-----cc
Confidence 99999999852 135999999996 99999999999 99998887421110000 000 11
Q ss_pred ccC-CCcccCCCccccccccccccccccCCCCCCcccccccccccCCCCCccccccccccCCCCCCHHHHHHHHHHHHHc
Q psy9003 971 AES-HDQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKA 1049 (1276)
Q Consensus 971 ~~S-~~~~~WGYdp~nyf~~d~~~y~~~S~~~Dp~~~~dap~~~yas~s~hkYt~D~~~ID~~~Gt~eEfK~LV~alHk~ 1049 (1276)
.++ ...++|||+|.+|| +|+++|++.. ..+.|+++|||+||++||++
T Consensus 335 ~~~~~~~ynwGY~~~~~~---------------------a~~~~yGt~p-----------~~~~~~~~efk~lV~~~H~~ 382 (877)
T 3faw_A 335 YTSSDNNYNWGYDPQSYF---------------------ALSGMYSEKP-----------KDPSARIAELKQLIHDIHKR 382 (877)
T ss_dssp CCSSSCSCCCSCSBSCSS---------------------SBCSTTCSCT-----------TSTTHHHHHHHHHHHHHHHT
T ss_pred ccCCCCCCccCcCcCccc---------------------cccccccCCC-----------CCcchHHHHHHHHHHHHHHc
Confidence 111 23467999999999 6676666521 02345699999999999999
Q ss_pred CCEEEEEEeccccCCcccCCCcCCCCCCCccccc-CCCCC-CCCCCCcCCCCCcHHHHHHHHHHHHHHHHhCCCcEEccC
Q psy9003 1050 GLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHD-GPRGT-HPLWDSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFD 1127 (1276)
Q Consensus 1050 GI~VILDvV~NHt~~~~~~~~~~f~g~~~~Yy~~-~~~g~-~~~W~g~~LN~~np~Vr~~Iidsl~~Wv~eygVDGFRfD 1127 (1276)
||+||||||+||++.++ .|.+..+.||+. +++|. ..+|+++++|+++|+||++|+++++||++||||||||||
T Consensus 383 GI~VILDvV~NH~a~~~-----~~~~~~p~yy~~~~~dg~~~~~~~g~~ln~~~p~Vr~~i~d~l~~Wv~e~gVDGFRfD 457 (877)
T 3faw_A 383 GMGVILDVVYNHTAKTY-----LFEDIEPNYYHFMNEDGSPRESFGGGRLGTTHAMSRRVLVDSIKYLTSEFKVDGFRFD 457 (877)
T ss_dssp TCEEEEEECTTCCSCTH-----HHHTTSTTTSBCBCTTSCBCEETTEECBCTTSHHHHHHHHHHHHHHHHHHCCCEEEET
T ss_pred CCEEEEEEeeccccCcc-----ccccCCCceeeeeCCCCCeeccCCCcccccCCHHHHHHHHHHHHHHHHHcCCcEEEEe
Confidence 99999999999999875 466777777753 55565 456778999999999999999999999999999999999
Q ss_pred CccccccccCCCCCCCCCCCccccCCCCCchHHHHHHHHHHHHHhhCCCeEEEEEccCC
Q psy9003 1128 GVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSG 1186 (1276)
Q Consensus 1128 ~a~~L~~~d~g~g~~~~~~~~~~~~~~~d~~a~~Fl~el~~~Vr~~~PdvilIAE~~s~ 1186 (1276)
+|+++. ..||+.+...+++.+|++++|||.|..
T Consensus 458 ~a~~~~--------------------------~~~~~~~~~~~~~~~P~~~ligE~Wd~ 490 (877)
T 3faw_A 458 MMGDHD--------------------------AAAIELAYKEAKAINPNMIMIGEGWRT 490 (877)
T ss_dssp TGGGSB--------------------------HHHHHHHHHHHHHHCTTCEEEECCCSC
T ss_pred cCCcCC--------------------------HHHHHHHHHHHHhhCCCcEEEEccccc
Confidence 998662 358999999999999999999999974
|
| >2fhf_A Pullulanase; multiple domain, beta-alpha-barrel, alpha-amylase-family, complex with maltotetraose, hydrolase; HET: GLC; 1.65A {Klebsiella aerogenes} SCOP: b.1.18.2 b.1.18.2 b.3.1.3 b.71.1.1 c.1.8.1 PDB: 2fh6_A* 2fh8_A* 2fhb_A* 2fhc_A* 2fgz_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.4e-49 Score=499.33 Aligned_cols=342 Identities=13% Similarity=0.139 Sum_probs=251.5
Q ss_pred CcccCeeecCceEEEEEccCCcEEEEEc-cCCCCcccccccee-cCCCeEEEEcCCCCCCCcccCcccEEEEEEEEe---
Q psy9003 771 TPEQLKYLVDECHKAGLLCFMHVVCAAG-DFNNWNREEFAYKK-LDFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQ--- 845 (1276)
Q Consensus 771 tp~G~~y~~D~a~FalwAP~A~~VsLvG-DFN~wd~~~~pM~r-~~~GVWsl~Ip~~~~G~~~i~hGs~YkYrV~~~--- 845 (1276)
.|+|+++..++++|+||||+|++|+|++ +++.|+...++|.+ ...|+|++++|+...| .+|+|+|...
T Consensus 295 ~~lGa~~~~~gv~F~vwAP~A~~V~L~l~d~~~~~~~~~~m~~~~~~GvW~~~v~~~~~G-------~~Y~y~v~~~~p~ 367 (1083)
T 2fhf_A 295 LSYGAQLTDSGVTFRVWAPTAQQVELVIYSADKKVIASHPMTRDSASGAWSWQGGSDLKG-------AFYRYAMTVYHPQ 367 (1083)
T ss_dssp SCCEEEEETTEEEEEEECTTCSEEEEEEECTTCCEEEEEECEECTTTCEEEEEECGGGTT-------CEEEEEEEEEETT
T ss_pred CCceeEEECCeEEEEEECCCCCEEEEEEEcCCCCccceEECeECCCCCEEEEEECCCCCC-------CEEEEEEEeecCC
Confidence 4788889989999999999999999997 88888777899985 5679999999977654 6999999741
Q ss_pred CCee--eeecCCcceEeecCCCCCccccc--eeeCCCCCCCCCcCCCCCC----CCCCc---eEEEEecCCccc------
Q psy9003 846 HGHL--LDRLSPWATYVTEPPVVGHAYEQ--RIWNPKPQDKHKWTSSKPK----KPDNL---KIYESHVGICTQ------ 908 (1276)
Q Consensus 846 dG~~--~~~~DPYAkav~~~~~~s~v~~~--~~~~p~~~~~y~W~~~rp~----~~~d~---vIYElHVr~ft~------ 908 (1276)
+|.+ ..++||||+++..+..+|.+++. ..|.| ++|...+++ .++++ +|||+|||+|+.
T Consensus 368 ~g~~~~~~~~DPYa~~~~~~~~~s~v~d~~~~~~~p-----~~W~~~~~p~~~~~~~~~~~~vIYE~hvr~ft~~~~~~~ 442 (1083)
T 2fhf_A 368 SRKVEQYEVTDPYAHSLSTNSEYSQVVDLNDSALKP-----EGWDGLTMPHAQKTKADLAKMTIHESHIRDLSAWDQTVP 442 (1083)
T ss_dssp TTEEEEEEECCTTCSCBCGGGSSEECBCTTCGGGSC-----TTGGGCCCSSCCSSHHHHHTCEEEEECHHHHHTTCTTSC
T ss_pred CCccccceecCCccceeccCCCcceEecccccccCC-----cccccccCcccccccccccccEEEEEecchhcCCCCCCC
Confidence 4653 67999999999887666655442 22333 589887654 33445 999999999985
Q ss_pred cCccCcHHHHHHh------hhhHHHHcCCCCCccceeeccccccccccccc-----ceeec---cCc----------c--
Q psy9003 909 EQKCASYEDFVRV------VIPRIVKQGMAIPDKWIELLKKFKDEDWNMGN-----IVHTL---TNR----------R-- 962 (1276)
Q Consensus 909 ~~~~Gtf~gl~ek------~LdyLK~LGVna~d~wV~LmP~f~~eew~~~~-----pi~~l---~~~----------P-- 962 (1276)
+..+|||+|++++ .|+||++||||+ |||||+|++...+-.+ +-|++ +.. +
T Consensus 443 ~~~~Gt~~g~~e~~~~~i~~L~~L~~lGvt~----i~LlPv~~~~~v~e~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 518 (1083)
T 2fhf_A 443 AELRGKYLALTAQESNMVQHLKQLSASGVTH----IELLPVFDLATVNEFSDKVADIQQPFSRLCEVNSAVKSSEFAGYC 518 (1083)
T ss_dssp GGGTTSGGGGGCTTSHHHHHHHHHHHHTCCE----EEESCCEEESSSCCCGGGCCCTTSBHHHHHHHCHHHHTSTTGGGT
T ss_pred cCCCCChhhhhhhhhhhHHHHHHHHhcCCCE----EEECCcccccccccccccccccccccccccccccccccccccccc
Confidence 2457999999874 588888999999 9999999863222100 00110 000 0
Q ss_pred ---------cccc------------ccc-cccCCCcccCCCccccccccccccccccCCCCCCcccccccccccCCCCCc
Q psy9003 963 ---------YMEK------------TVA-YAESHDQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQL 1020 (1276)
Q Consensus 963 ---------i~E~------------~i~-~~~S~~~~~WGYdp~nyf~~d~~~y~~~S~~~Dp~~~~dap~~~yas~s~h 1020 (1276)
+.+. .+. +..+.+.++|||++.+|| +|+++|++..
T Consensus 519 ~~~~~~~~~l~~~~~~~~~~~~~~~~l~~y~~~~d~~nwGYd~~~y~---------------------a~~~~yGt~p-- 575 (1083)
T 2fhf_A 519 DSGSTVEEVLTQLKQNDSKDNPQVQALNTLVAQTDSYNWGYDPFHYT---------------------VPEGSYATDP-- 575 (1083)
T ss_dssp TSSCBHHHHHHHHSTTCBTTBCHHHHHHHHHTTSSSCCCCCCEEEEE---------------------EECSTTSSCC--
T ss_pred cccccchhhhhcccccccchhhhhhhhhccccccCCCCCCCCcCcCC---------------------CcChhhcCCC--
Confidence 0000 000 000114567999999999 7774444310
Q ss_pred cccccccccCCCCCCHHHHHHHHHHHHHc-CCEEEEEEeccccCCcccCCC-cCCCCCCCccc-ccCC-CCCCCCCC-Cc
Q psy9003 1021 KYLVDECHKAGLFGTPEQLKYLVDECHKA-GLYVLLDVVHSHASKNVLDGL-NEFDGTQACFF-HDGP-RGTHPLWD-SR 1095 (1276)
Q Consensus 1021 kYt~D~~~ID~~~Gt~eEfK~LV~alHk~-GI~VILDvV~NHt~~~~~~~~-~~f~g~~~~Yy-~~~~-~g~~~~W~-g~ 1095 (1276)
....+++|||+||++||++ ||+||||||||||+..++++. ..|++..+.|| +.++ ++.+.+|. ..
T Consensus 576 ----------~~~~r~~efk~LV~~~H~~~GI~VILDvV~NHt~~~~~~~~~~~~d~~~p~yy~~~~p~~g~~~~~tg~~ 645 (1083)
T 2fhf_A 576 ----------EGTARIKEFRTMIQAIKQDLGMNVIMDVVYNHTNAAGPTDRTSVLDKIVPWYYQRLNETTGSVESATCCS 645 (1083)
T ss_dssp ----------STTHHHHHHHHHHHHHHHTSCCEEEEEECTTEESCCSSSCTTCCHHHHSTTTSBCBCTTTCCBCCTTSSE
T ss_pred ----------CccccHHHHHHHHHHHHhhcCCEEEEEeccccCcCCCccchhccccCCCCCceeecCCCCCceecCCccC
Confidence 0112289999999999998 999999999999999887654 33455445555 4342 45554444 25
Q ss_pred CCCCCcHHHHHHHHHHHHHHHHhCCCcEEccCCccccccccCCCCCCCCCCCccccCCCCCchHHHHHHHHHHHHHhhCC
Q psy9003 1096 LFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYP 1175 (1276)
Q Consensus 1096 ~LN~~np~Vr~~Iidsl~~Wv~eygVDGFRfD~a~~L~~~d~g~g~~~~~~~~~~~~~~~d~~a~~Fl~el~~~Vr~~~P 1175 (1276)
++|++||+||++|+++++||+++|||||||||++..+. ..+|.++++.+++.+|
T Consensus 646 dln~~~p~Vr~~i~d~l~~W~~e~gVDGfR~D~a~~~~--------------------------~~~~~~~~~~l~~~~p 699 (1083)
T 2fhf_A 646 DSAPEHRMFAKLIADSLAVWTTDYKIDGFRFDLMLYHP--------------------------KAQILSAWERIKALNP 699 (1083)
T ss_dssp EBCTTSHHHHHHHHHHHHHHHHHHCCCEEEETTGGGSB--------------------------HHHHHHHHHHHHTTCT
T ss_pred CcCcCCHHHHHHHHHHHHHHHHHhCCcEEEEeCcccCC--------------------------HHHHHHHHHHHHHhCC
Confidence 68999999999999999999999999999999998762 3478889999999999
Q ss_pred CeEEEEEccCCC
Q psy9003 1176 EIITIAEDVSGM 1187 (1276)
Q Consensus 1176 dvilIAE~~s~~ 1187 (1276)
++++|||.|...
T Consensus 700 ~~~ligE~w~~~ 711 (1083)
T 2fhf_A 700 DIYFFGEGWDSN 711 (1083)
T ss_dssp TCEEEECCCCCS
T ss_pred CeEEEEeeccCc
Confidence 999999998643
|
| >2ya1_A Putative alkaline amylopullulanase; hydrolase, glycoside hydrolase; HET: BGC GLC; 2.25A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.7e-48 Score=490.07 Aligned_cols=345 Identities=19% Similarity=0.242 Sum_probs=250.5
Q ss_pred hHhhccccCCCCCcccCeeecCc--eEEEEEccCCcEEEEEc-cCCCCcc--ccccceecCCCeEEEEcCCCC-CCCccc
Q psy9003 759 LVDECHKAGLFGTPEQLKYLVDE--CHKAGLLCFMHVVCAAG-DFNNWNR--EEFAYKKLDFGKWELVLPPNP-DGSCKL 832 (1276)
Q Consensus 759 F~~~Y~~~G~~Gtp~G~~y~~D~--a~FalwAP~A~~VsLvG-DFN~wd~--~~~pM~r~~~GVWsl~Ip~~~-~G~~~i 832 (1276)
|+..|.+ .| |+|+++..++ ++|+||||+|++|+|++ +++.|+. .+++|.+...|+|++++|+.. .| ...
T Consensus 312 ~d~~~~y---~~-~lGa~~~~~g~gv~F~vwAP~A~~V~L~l~d~~~~~~~~~~~~m~~~~~gvW~~~v~~~~~~g-~~~ 386 (1014)
T 2ya1_A 312 KDETYSY---DG-KLGADLKEEGKQVDLTLWSPSADKVSVVVYDKNDPDKVVGTVALEKGERGTWKQTLDSTNKLG-ITD 386 (1014)
T ss_dssp HHHHHCC---CS-CCEEEEEGGGTEEEEEEECTTCSEEEEEEECSSCTTSEEEEEECEECGGGEEEEEECTTCSSC-CSC
T ss_pred ccccccC---CC-CcccEEeCCCCEEEEEEECCCCCEEEEEEEECCCCCccceEEecccCCCCEEEEEEcccccCC-ccc
Confidence 4555544 23 8899888766 79999999999999997 7887763 469999878899999999632 12 012
Q ss_pred CcccEEEEEEEEeCCeeeeecCCcceEeecCCC-------CCccccceeeCCCCC--CCCCcCCCCC-CCCCCceEEEEe
Q psy9003 833 THLSQVKLVVRNQHGHLLDRLSPWATYVTEPPV-------VGHAYEQRIWNPKPQ--DKHKWTSSKP-KKPDNLKIYESH 902 (1276)
Q Consensus 833 ~hGs~YkYrV~~~dG~~~~~~DPYAkav~~~~~-------~s~v~~~~~~~p~~~--~~y~W~~~rp-~~~~d~vIYElH 902 (1276)
..|..|+|+|.. +|.....+||||+++..... .+....+.+++|... ..++|....+ ..+++++|||+|
T Consensus 387 ~~G~~Y~y~i~~-~~~~~~~~DPYa~~~~~~~~~~~~~~~~~~~~~s~vvd~~~~~~~~~~~~~~~~~~~~~~~vIYE~h 465 (1014)
T 2ya1_A 387 FTGYYYQYQIER-QGKTVLALDPYAKSLAAWNSDDSKIDDAHKVAKAAFVDPAKLGPQDLTYGKIHNFKTREDAVIYEAH 465 (1014)
T ss_dssp CTTCEEEEEEEE-TTEEEEECCTTCSSBCCCBGGGTTSCGGGSSCCEECCCGGGSSCTTCCCCCCTTCSSGGGCCEEEEC
T ss_pred cCCcEEEEEEEe-CCeEEEecCccceeccccccccccccccCCcccEEEECchhcCCcccccccCccccCccccEEEEEe
Confidence 367899999975 56666789999998764211 011122344444311 1234543222 245789999999
Q ss_pred cCCcccc--------CccCcHHHHHHhhhhHHHHcCCCCCccceeecccccccccccccceeeccCccccccccccccCC
Q psy9003 903 VGICTQE--------QKCASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAESH 974 (1276)
Q Consensus 903 Vr~ft~~--------~~~Gtf~gl~ek~LdyLK~LGVna~d~wV~LmP~f~~eew~~~~pi~~l~~~Pi~E~~i~~~~S~ 974 (1276)
||+|+.. ...|||+|++++ |||||+||||+ |||||++++...+ +....+....+..+.
T Consensus 466 v~~ft~~~~~~~~~~~~~Gt~~gl~~~-LdyLk~LGvta----V~L~Pv~~~~~~~---------e~~~~~~~~~y~~~~ 531 (1014)
T 2ya1_A 466 VRDFTSDPAIAKDLTKPFGTFEAFIEK-LDYLKDLGVTH----IQLLPVLSYYFVN---------ELKNHERLSDYASSN 531 (1014)
T ss_dssp HHHHHCCGGGTTTCSSCTTSHHHHHTT-HHHHHHHTCSE----EEESCCBCBSSCB---------GGGTTSCCCSCCSSS
T ss_pred cCCCCCCCCccccccCCCcCHHHHHHH-hHHHHHcCCCe----EEecCcccccccc---------cccccccccccccCc
Confidence 9999852 135999999996 99999999999 9999888741100 000000000111122
Q ss_pred CcccCCCccccccccccccccccCCCCCCcccccccccccCCCCCccccccccccCCCCCCHHHHHHHHHHHHHcCCEEE
Q psy9003 975 DQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLYVL 1054 (1276)
Q Consensus 975 ~~~~WGYdp~nyf~~d~~~y~~~S~~~Dp~~~~dap~~~yas~s~hkYt~D~~~ID~~~Gt~eEfK~LV~alHk~GI~VI 1054 (1276)
..++|||+|.+|| +|+++|++... .+.++++|||+||++||++||+||
T Consensus 532 ~~ynwGY~~~~y~---------------------a~~~~ygt~p~-----------~~~~~~~efk~lV~~~H~~GI~VI 579 (1014)
T 2ya1_A 532 SNYNWGYDPQNYF---------------------SLTGMYSSDPK-----------NPEKRIAEFKNLINEIHKRGMGAI 579 (1014)
T ss_dssp CSCCCSCSBSCSS---------------------SBCSTTCSCTT-----------CTTHHHHHHHHHHHHHHTTTCEEE
T ss_pred CCcccCCCcCcCc---------------------cccccccCCCc-----------cccchHHHHHHHHHHHHHcCCEEE
Confidence 3467999999999 77766765310 122458999999999999999999
Q ss_pred EEEeccccCCcccCCCcCCCCCCCccccc-CCCCC-CCCCCCcCCCCCcHHHHHHHHHHHHHHHHhCCCcEEccCCcccc
Q psy9003 1055 LDVVHSHASKNVLDGLNEFDGTQACFFHD-GPRGT-HPLWDSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSM 1132 (1276)
Q Consensus 1055 LDvV~NHt~~~~~~~~~~f~g~~~~Yy~~-~~~g~-~~~W~g~~LN~~np~Vr~~Iidsl~~Wv~eygVDGFRfD~a~~L 1132 (1276)
|||||||++.++ .|.+..+.||+. +.++. ..+|+++++|+++|+||++|+++++||++||||||||||+|+.+
T Consensus 580 lDvV~NHt~~~~-----~~~~~~~~yy~~~~~~g~~~~~~~~~~l~~~~~~vr~~i~d~l~~W~~e~gvDGfR~D~~~~~ 654 (1014)
T 2ya1_A 580 LDVVYNHTAKVD-----LFEDLEPNYYHFMDADGTPRTSFGGGRLGTTHHMTKRLLIDSIKYLVDTYKVDGFRFDMMGDH 654 (1014)
T ss_dssp EEECTTCCSCHH-----HHHTTSTTTSBCBCTTCCBCEETTEECBCTTSHHHHHHHHHHHHHHHHHHCCCEEEETTGGGS
T ss_pred EEEecccccccc-----ccccCCCCeeEEeCCCCCcccCCCCCCcCcCCHHHHHHHHHHHHHHHHhcCceEEEEeCCCCC
Confidence 999999999875 355666666653 44444 34677889999999999999999999999999999999998754
Q ss_pred ccccCCCCCCCCCCCccccCCCCCchHHHHHHHHHHHHHhhCCCeEEEEEccCC
Q psy9003 1133 LYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSG 1186 (1276)
Q Consensus 1133 ~~~d~g~g~~~~~~~~~~~~~~~d~~a~~Fl~el~~~Vr~~~PdvilIAE~~s~ 1186 (1276)
...||++++..+++.+|++++|||.|..
T Consensus 655 --------------------------~~~~~~~~~~~~~~~~p~~~ligE~W~~ 682 (1014)
T 2ya1_A 655 --------------------------DAASIEEAYKAARALNPNLIMLGEGWRT 682 (1014)
T ss_dssp --------------------------BHHHHHHHHHHHHHHCTTCEEEECCCSC
T ss_pred --------------------------CHHHHHHHHHHHHHhCCCeEEEEeeccc
Confidence 1348889999999999999999999874
|
| >2vr5_A Glycogen operon protein GLGX; hydrolase, glycosidase, glycosyl hydrolase, glycogen debraching; HET: GLC A16; 2.8A {Sulfolobus solfataricus} PDB: 2vnc_A* 2vuy_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-47 Score=474.42 Aligned_cols=331 Identities=21% Similarity=0.267 Sum_probs=242.7
Q ss_pred CcccCee--ecCceEEEEEccCCcEEEEEccCCCCcc----ccccceecCCCeEEEEcCCCCCCCcccCcccEEEEEEEE
Q psy9003 771 TPEQLKY--LVDECHKAGLLCFMHVVCAAGDFNNWNR----EEFAYKKLDFGKWELVLPPNPDGSCKLTHLSQVKLVVRN 844 (1276)
Q Consensus 771 tp~G~~y--~~D~a~FalwAP~A~~VsLvGDFN~wd~----~~~pM~r~~~GVWsl~Ip~~~~G~~~i~hGs~YkYrV~~ 844 (1276)
.|+|+++ ..++++|+||||+|++|+|++ |+.+.. ..++|.+..+|+|++++|+...| ..|+|+|.+
T Consensus 18 ~~lGa~~~~~~~g~~F~vwap~A~~V~l~l-f~~~~~~~~~~~~~m~~~~~gvw~~~v~~~~~g-------~~Y~y~v~g 89 (718)
T 2vr5_A 18 YPLGSNWIEDDDGVNFSLFSENAEKVELLL-YSLTNQKYPKEIIEVKNKTGDIWHVFVPGLRPG-------QLYAYRVYG 89 (718)
T ss_dssp CSSEEEEEGGGTEEEEEEECSSCSEEEEEE-CCSSCCSSCSEEEEECEESSSEEEEEEETCCTT-------CEEEEEEEC
T ss_pred CCCcceEeeCCCeEEEEEECCCCCEEEEEE-EcCCCCCCcceEEeCccCCCCEEEEEeCCCCCC-------CEEEEEEee
Confidence 4789988 667899999999999999997 665321 46899888889999999987655 699999986
Q ss_pred e----CCeee----eecCCcceEeecCCCCCc------------------------cccceeeCCCCCCCCCcCCC---C
Q psy9003 845 Q----HGHLL----DRLSPWATYVTEPPVVGH------------------------AYEQRIWNPKPQDKHKWTSS---K 889 (1276)
Q Consensus 845 ~----dG~~~----~~~DPYAkav~~~~~~s~------------------------v~~~~~~~p~~~~~y~W~~~---r 889 (1276)
+ +|.++ .++||||+++..+..++. ...+.+++| .|+|+.+ +
T Consensus 90 ~~~p~~g~~~~~~~~~~DPya~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~s~v~d~----~~~W~~~~~~~ 165 (718)
T 2vr5_A 90 PYKPELGLRFNPNKVLIDPYAKAINGSVIWNDAVFGYKIGDQNQDLTYDERDSGEYVPKSVVINP----YFEWDDEDFIK 165 (718)
T ss_dssp CEETTTTEECCTTSCBCCTTCSCBCSCCCCCGGGSSSCSSCTTTTTSCCCCCCTTTSCCEECCCC----CCCCTTGGGGS
T ss_pred ecCcccCcccCCCceEcCcCccccccCccccccccccccCCcccccccccccccccccceEEecC----CcCCCcccccc
Confidence 4 57664 679999999875422110 012334444 3889876 4
Q ss_pred CC--CCCCceEEEEecCCcccc------CccCcHHHHHHh-hhhHHHHcCCCCCccceeecccccccccccccceeeccC
Q psy9003 890 PK--KPDNLKIYESHVGICTQE------QKCASYEDFVRV-VIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTN 960 (1276)
Q Consensus 890 p~--~~~d~vIYElHVr~ft~~------~~~Gtf~gl~ek-~LdyLK~LGVna~d~wV~LmP~f~~eew~~~~pi~~l~~ 960 (1276)
++ ++++++|||+|||+|+.. ...|||+|++++ .|||||+||||+ |||||++++..-
T Consensus 166 ~~~~~~~~~vIYeihv~~f~~~~~~~~~~~~Gt~~gi~~~~~l~yLk~LGvt~----I~L~Pi~~~~~~----------- 230 (718)
T 2vr5_A 166 GKKVPLKDTVIYEVHVKGFTKLRLDLPENIRGTYEGLASEQMISYLKDLGITT----VELMPVFHFIDQ----------- 230 (718)
T ss_dssp SSCCCTTSCCEEEECTTTTTTTCTTSCTTSTTSHHHHTSHHHHHHHHHHTCCE----EEECCCBCBCCC-----------
T ss_pred CCCCChhHCEEEEEEcchhhcCCCCCCcccCcCHHHHhcchhhHHHHHcCCCe----EEEeCCEecCcc-----------
Confidence 43 568999999999999852 358999999984 599999999999 999977764110
Q ss_pred ccccccccccccCCCcccCCCccccccccccccccccCCCCCCcccccccccccCCCCCccccccccccCCCCCCHHHHH
Q psy9003 961 RRYMEKTVAYAESHDQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLK 1040 (1276)
Q Consensus 961 ~Pi~E~~i~~~~S~~~~~WGYdp~nyf~~d~~~y~~~S~~~Dp~~~~dap~~~yas~s~hkYt~D~~~ID~~~Gt~eEfK 1040 (1276)
....+ ....++|||++.+|| +|+++|+++. ....+++|||
T Consensus 231 ~~~~~-------~g~~~~wGY~~~~y~---------------------~~~~~yGt~~------------~~~~~~~dfk 270 (718)
T 2vr5_A 231 RFLTD-------KGLTNYWGYDPINFF---------------------SPECRYSSTG------------CLGGQVLSFK 270 (718)
T ss_dssp HHHHT-------TTCCCSSCCCBSCSS---------------------SBCGGGCSSC------------TTTHHHHHHH
T ss_pred ccccc-------cCCcCccCcCcccCc---------------------ccChhhcCCC------------CCCchHHHHH
Confidence 00000 012457999999999 6664444321 0112289999
Q ss_pred HHHHHHHHcCCEEEEEEeccccCCcccCCC-cCCCCCC-CcccccCCCC--CCCCCC--CcCCCCCcHHHHHHHHHHHHH
Q psy9003 1041 YLVDECHKAGLYVLLDVVHSHASKNVLDGL-NEFDGTQ-ACFFHDGPRG--THPLWD--SRLFNYSEIEVLRFLLSNLRW 1114 (1276)
Q Consensus 1041 ~LV~alHk~GI~VILDvV~NHt~~~~~~~~-~~f~g~~-~~Yy~~~~~g--~~~~W~--g~~LN~~np~Vr~~Iidsl~~ 1114 (1276)
+||++||++||+||||+|+||++.++.++. .+|.+.+ +.||+..+++ .+.+|. +++||+++|+||++|+++++|
T Consensus 271 ~lv~~~H~~Gi~VilDvV~NH~~~~~~~~~~~~~~~~~~~~yy~~~~~~~~~~~~~~~~~~~ln~~~p~v~~~i~d~l~~ 350 (718)
T 2vr5_A 271 KMVNELHNAGIEVIIDVVYNHTAEGNHLGPTLSFRGIDNTAYYMLQPDNKRYYLDFTGTGNTLNLSHPRVIQMVLDSLRY 350 (718)
T ss_dssp HHHHHHHTTTCEEEEEECCSCCSSCSTTSCCSSHHHHHSTTTBCBCTTTSSSBCCSSSSSCCBCTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCEEEEEeccCcccCccccCccccccCCCCCcceEeCCCCCceeecCCCccCeecCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999876653 2344332 4677654432 344443 589999999999999999999
Q ss_pred HHHhCCCcEEccCCccccccccCCCCCCCCCCCccccCCCCCchHHHHHHHHHHHHHhhCCCeEEEEEccCCC
Q psy9003 1115 YLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGM 1187 (1276)
Q Consensus 1115 Wv~eygVDGFRfD~a~~L~~~d~g~g~~~~~~~~~~~~~~~d~~a~~Fl~el~~~Vr~~~PdvilIAE~~s~~ 1187 (1276)
|++||||||||||+|..|... . + .|. ....|++++++ ....|++++|||.|...
T Consensus 351 W~~e~gvDGfR~D~~~~l~~~-~--~-~~~-------------~~~~~~~~i~~--~~~~~~~~liaE~w~~~ 404 (718)
T 2vr5_A 351 WVTEMHVDGFRFDLAAALARE-L--Y-SVN-------------MLNTFFIALQQ--DPILSQVKLIAEPWDVG 404 (718)
T ss_dssp HHHTTCCCEEEETTGGGGGBS-S--S-SBC-------------TTCHHHHHHHH--CTTGGGSEEEECCBCSS
T ss_pred HHHHcCCCEEEEcchhhhhhc-c--C-Ccc-------------chHHHHHHHHh--CcccCCcEEEecccccC
Confidence 999999999999999988532 0 0 111 12347777765 24678999999998743
|
| >3m07_A Putative alpha amylase; IDP00968, csgid, structural genomics, center for structural genomics of infectious diseases, unknown function; HET: BTB PG4 PGE; 1.40A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-48 Score=470.67 Aligned_cols=310 Identities=19% Similarity=0.264 Sum_probs=248.8
Q ss_pred CCCcccCee-ecCceEEEEEccCCcEEEEEccCCCCccccccceecCCCeEEEEcCCCCCCCcccCcccEEEEEEEEeCC
Q psy9003 769 FGTPEQLKY-LVDECHKAGLLCFMHVVCAAGDFNNWNREEFAYKKLDFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHG 847 (1276)
Q Consensus 769 ~Gtp~G~~y-~~D~a~FalwAP~A~~VsLvGDFN~wd~~~~pM~r~~~GVWsl~Ip~~~~G~~~i~hGs~YkYrV~~~dG 847 (1276)
+..|.|+++ ..++++|+||||+|++|+|+++ + ..+||.+.+.|+|++++|+...| ..|+|+|. +|
T Consensus 30 ~~~~lGa~~~~~~~~~F~vwap~a~~v~l~~~---~--~~~~m~~~~~g~~~~~~~~~~~g-------~~Y~y~v~--~~ 95 (618)
T 3m07_A 30 FCKSWGAEYIAADVVRFRLWATGQQKVMLRLA---G--KDQEMQANGDGWFTLDVAGVTPG-------TEYNFVLS--DG 95 (618)
T ss_dssp CCCSSEEEEEETTEEEEEEECTTCSCEEEEET---T--EEEECEECSTTEEEEEEETCCTT-------CEEEEEET--TS
T ss_pred CCCCCCceEecCCcEEEEEECCCCCEEEEEEC---C--CcccCeecCCEEEEEEeCCCCCC-------CEEEEEEe--CC
Confidence 346889988 7788999999999999999962 2 46899998889999999987665 69999995 56
Q ss_pred eeeeecCCcceEeecCCCCCccccceeeCCCCCCCCCcCCCCCC--CCCCceEEEEecCCccccCccCcHHHHHHhhhhH
Q psy9003 848 HLLDRLSPWATYVTEPPVVGHAYEQRIWNPKPQDKHKWTSSKPK--KPDNLKIYESHVGICTQEQKCASYEDFVRVVIPR 925 (1276)
Q Consensus 848 ~~~~~~DPYAkav~~~~~~s~v~~~~~~~p~~~~~y~W~~~rp~--~~~d~vIYElHVr~ft~~~~~Gtf~gl~ek~Ldy 925 (1276)
. .++||||++...... ..+.+++|. .|+|+...++ .+++++|||+|||+|++ .|+|++++++ |||
T Consensus 96 ~--~~~DP~a~~~~~~~~----~~s~v~d~~---~~~w~~~~~~~~~~~~~~iYe~~v~~f~~---~G~~~~~~~~-L~y 162 (618)
T 3m07_A 96 M--VVPDPASRAQKTDVN----GPSYVVDPG---SYTWRNTGWKGSRWEQAVVYEMHTGTFTP---EGTFRAAIAK-LPY 162 (618)
T ss_dssp C--EECCTTCSCBSSSTT----SCEECCCTT---SSCCSCTTCCCCCGGGCCEEEECHHHHSS---SCSHHHHHTT-HHH
T ss_pred e--EeccccceeeecCCC----CCEEEEcCc---cCCCCCccccCCChhhCeEEEEehhhcCC---CCCHHHHHHH-HHH
Confidence 3 589999998754321 124455654 5899876542 45889999999999986 5899999986 999
Q ss_pred HHHcCCCCCccceeecccccccccccccceeeccCccccccccccccCCCcccCCCccccccccccccccccCCCCCCcc
Q psy9003 926 IVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAESHDQALVGDKTIAFWLMDKEMYTHMSTLSDPSL 1005 (1276)
Q Consensus 926 LK~LGVna~d~wV~LmP~f~~eew~~~~pi~~l~~~Pi~E~~i~~~~S~~~~~WGYdp~nyf~~d~~~y~~~S~~~Dp~~ 1005 (1276)
||+||||+ |||||++ ++ + ...+|||++.+||
T Consensus 163 l~~lGv~~----v~l~Pi~--------------------~~--~-----~~~~~GY~~~~~~------------------ 193 (618)
T 3m07_A 163 LAELGVTV----IEVMPVA--------------------QF--G-----GERGWGYDGVLLY------------------ 193 (618)
T ss_dssp HHHHTCCE----EEECCCE--------------------EC--S-----SSCCCSTTCCEEE------------------
T ss_pred HHHcCCCE----EEeCChh--------------------cc--C-----CCCCCCcCccccc------------------
Confidence 99999999 9999443 32 1 1346999999999
Q ss_pred cccccccccCCCCCccccccccccCCCCCCHHHHHHHHHHHHHcCCEEEEEEeccccCCcccCCCcCCCCCCCcccccCC
Q psy9003 1006 IIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGP 1085 (1276)
Q Consensus 1006 ~~dap~~~yas~s~hkYt~D~~~ID~~~Gt~eEfK~LV~alHk~GI~VILDvV~NHt~~~~~~~~~~f~g~~~~Yy~~~~ 1085 (1276)
+|+ |+||+++|||+||++||++||+||||+|+||++.++.+. ....+.||+.+
T Consensus 194 ---~~~-------------------~~~G~~~~~~~lv~~~H~~Gi~VilD~V~NH~~~~~~~~----~~~~~~~~~~~- 246 (618)
T 3m07_A 194 ---APH-------------------SAYGTPDDFKAFIDAAHGYGLSVVLDIVLNHFGPEGNYL----PLLAPAFFHKE- 246 (618)
T ss_dssp ---EEC-------------------TTTCCHHHHHHHHHHHHHTTCEEEEEECCSCCCSSSCCH----HHHCGGGEEEE-
T ss_pred ---ccC-------------------cCcCCHHHHHHHHHHHHHCCCEEEEeecCccCCCCcccc----cccCchhhcCC-
Confidence 565 899999999999999999999999999999999876432 11124566532
Q ss_pred CCCCCCCCCcCCCCCcHHHHHHHHHHHHHHHHhCCCcEEccCCccccccccCCCCCCCCCCCccccCCCCCchHHHHHHH
Q psy9003 1086 RGTHPLWDSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMV 1165 (1276)
Q Consensus 1086 ~g~~~~W~g~~LN~~np~Vr~~Iidsl~~Wv~eygVDGFRfD~a~~L~~~d~g~g~~~~~~~~~~~~~~~d~~a~~Fl~e 1165 (1276)
....| ++++|+++|+||++|++++++|+++|||||||||++..|... .+..||++
T Consensus 247 --~~~~w-g~~ln~~~p~V~~~i~~~~~~w~~~~gvDGfR~D~~~~~~~~----------------------~~~~f~~~ 301 (618)
T 3m07_A 247 --RMTPW-GNGIAYDVDAVRRYIIEAPLYWLTEYHLDGLRFDAIDQIEDS----------------------SARHVLVE 301 (618)
T ss_dssp --EEETT-EEEECTTSHHHHHHHHHHHHHHHHHTTCSEEEETTGGGCCCC----------------------SSSCHHHH
T ss_pred --CCCCC-CCCcCCCCHHHHHHHHHHHHHHHHHhCccEEEecchhhhccc----------------------chHHHHHH
Confidence 12345 467999999999999999999999999999999999988311 12359999
Q ss_pred HHHHHHhhCCC--eEEEEEccCCCCCCccccccCCcc-cCcccC
Q psy9003 1166 ANKFLHDKYPE--IITIAEDVSGMPASCRPVTEGGTG-FDYRLV 1206 (1276)
Q Consensus 1166 l~~~Vr~~~Pd--vilIAE~~s~~p~~~~p~~~gglG-FD~~~n 1206 (1276)
+++.+++..|+ +++|||.|.+.+....+...|+.| ||+.|+
T Consensus 302 l~~~v~~~~p~~~~~li~E~~~~~~~~l~~~~~g~~g~~d~~~n 345 (618)
T 3m07_A 302 IAQRIREDITDRPIHLTTEDSRNIISLHPRDQDGNAPLFTAEWN 345 (618)
T ss_dssp HHHHHHHHCCSSCCEEEECCSSCCCTTSCCCTTSCCSSCSEEEC
T ss_pred HHHHHHHhCCCCCEEEEEEecCCchhhhcccccCCccccceeec
Confidence 99999999886 999999999988888777666665 877655
|
| >1bf2_A Isoamylase; hydrolase, glycosidase, debranching enzyme; 2.00A {Pseudomonas amyloderamosa} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-48 Score=479.02 Aligned_cols=356 Identities=15% Similarity=0.160 Sum_probs=246.7
Q ss_pred CCcccCeeecCc--eEEEEEccCCcEEEEEccCCCCcc----ccccceecCCCeEEEEcCCCCCCCcccCccc-EEEEEE
Q psy9003 770 GTPEQLKYLVDE--CHKAGLLCFMHVVCAAGDFNNWNR----EEFAYKKLDFGKWELVLPPNPDGSCKLTHLS-QVKLVV 842 (1276)
Q Consensus 770 Gtp~G~~y~~D~--a~FalwAP~A~~VsLvGDFN~wd~----~~~pM~r~~~GVWsl~Ip~~~~G~~~i~hGs-~YkYrV 842 (1276)
..|+|+++..++ ++|+||||+|++|+|+. |+.|++ .+++|.+...|+|++++|+...+...+ +|. .|+|+|
T Consensus 4 ~~~lGa~~~~~g~~~~F~vwap~A~~V~l~l-~~~~~~~~~~~~~~m~~~~~gvW~~~v~~~~~~~~~~-~g~y~Y~y~v 81 (750)
T 1bf2_A 4 SMSLGASYDAQQANITFRVYSSQATRIVLYL-YSAGYGVQESATYTLSPAGSGVWAVTVPVSSIKAAGI-TGAVYYGYRA 81 (750)
T ss_dssp TTCCEEEECTTSSEEEEEEECSSCSEEEEEE-ESSSSSCCCSEEEECEECSTTEEEEEEEHHHHHHTTC-CSCCEEEEEE
T ss_pred CcCCCcEEeCCCCEEEEEEECCCCCEEEEEE-EccCCCCccceEEecccCCCCEEEEEECCcccccccC-CCCEEEEEEE
Confidence 357898888888 99999999999999997 776553 578999888899999999765111111 456 999999
Q ss_pred EEe----------------------CCeee----eecCCcceEeecCCCCC-----cc----------------ccceee
Q psy9003 843 RNQ----------------------HGHLL----DRLSPWATYVTEPPVVG-----HA----------------YEQRIW 875 (1276)
Q Consensus 843 ~~~----------------------dG~~~----~~~DPYAkav~~~~~~s-----~v----------------~~~~~~ 875 (1276)
.++ +|.++ ..+||||+++...+.++ .+ ..+.++
T Consensus 82 ~g~~~p~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~DPya~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~s~v~ 161 (750)
T 1bf2_A 82 WGPNWPYASNWGKGSQAGFVSDVDANGDRFNPNKLLLDPYAQEVSQDPLNPSNQNGNVFASGASYRTTDSGIYAPKGVVL 161 (750)
T ss_dssp EBTTBCCCTTCCTTCCTTCCCSSCTTCCCCCTTSCBCCTTCSCBSCCSSCSSCCCGGGGBCSTTTTTCCCTTTSCCEECC
T ss_pred EeeeccccccccccccccccccccccCcccCCCceecCcCcceeccCCCCcccccccccccccccccccccccccceEEe
Confidence 862 45554 57899999998654433 00 113344
Q ss_pred CCCCCCCCCcCCCCCC-CCCCceEEEEecCCcccc------CccCcHHHHHHhhhhHHHHcCCCCCccceeecccccccc
Q psy9003 876 NPKPQDKHKWTSSKPK-KPDNLKIYESHVGICTQE------QKCASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDED 948 (1276)
Q Consensus 876 ~p~~~~~y~W~~~rp~-~~~d~vIYElHVr~ft~~------~~~Gtf~gl~ek~LdyLK~LGVna~d~wV~LmP~f~~ee 948 (1276)
+| .|+|.+.+|. .+++++|||+|||+|+.. ..+|+|++++++ |||||+||||+ |||||++++.+
T Consensus 162 ~~----~~~W~d~~~~~~~~~~vIYe~hv~~f~~~~~~~~~~~~Gt~~gl~~~-l~yLk~LGvt~----V~L~Pi~~~~~ 232 (750)
T 1bf2_A 162 VP----STQSTGTKPTRAQKDDVIYEVHVRGFTEQDTSIPAQYRGTYYGAGLK-ASYLASLGVTA----VEFLPVQETQN 232 (750)
T ss_dssp CC----CCCCCCCCCCCCGGGCCEEEECHHHHHTTCTTSCGGGTTSHHHHHHT-HHHHHHHTCCE----EEESCCBCBSC
T ss_pred CC----CCCCCcCCCCCCccccEEEEEEhhHhhCcCCCCCccCCcCHHHHHHH-HHHHHHcCCCE----EEECCcccCcc
Confidence 44 3899954443 458899999999999852 347999999997 99999999999 99998876521
Q ss_pred cccccceeeccCccccccccccccCCCcccCCCccccccccccccccccCCCCCCcccccccccccCCCCCccccccccc
Q psy9003 949 WNMGNIVHTLTNRRYMEKTVAYAESHDQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECH 1028 (1276)
Q Consensus 949 w~~~~pi~~l~~~Pi~E~~i~~~~S~~~~~WGYdp~nyf~~d~~~y~~~S~~~Dp~~~~dap~~~yas~s~hkYt~D~~~ 1028 (1276)
-. +..+. .+....++|||++.+|| +|+++|++..
T Consensus 233 ~~-----------~~~~~----~~~g~~~~wGY~~~dy~---------------------~~~~~yGt~~---------- 266 (750)
T 1bf2_A 233 DA-----------NDVVP----NSDANQNYWGYMTENYF---------------------SPDRRYAYNK---------- 266 (750)
T ss_dssp TT-----------TTSST----TCCTTCCCSCCCBSCSS---------------------CBCGGGCSCC----------
T ss_pred cc-----------ccccc----cccccccccCcCccccc---------------------ccCccccCCC----------
Confidence 00 00000 01112467999999999 6664444321
Q ss_pred cCCCCCCHHHHHHHHHHHHHcCCEEEEEEeccccCCcccCCC--------cCCCCCC-CcccccCCC-CCCCCCC--CcC
Q psy9003 1029 KAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGL--------NEFDGTQ-ACFFHDGPR-GTHPLWD--SRL 1096 (1276)
Q Consensus 1029 ID~~~Gt~eEfK~LV~alHk~GI~VILDvV~NHt~~~~~~~~--------~~f~g~~-~~Yy~~~~~-g~~~~W~--g~~ 1096 (1276)
.+.++++|||+||++||++||+||||+|+||++.++.++. .+|.+.+ +.||+..++ +.+.+|. +++
T Consensus 267 --~~~~~~~efk~lV~~~H~~Gi~VilDvV~NH~~~~~~~~~~d~~~~p~~~~~~~d~~~~y~~~~~~~~~~~~~g~~~~ 344 (750)
T 1bf2_A 267 --AAGGPTAEFQAMVQAFHNAGIKVYMDVVYNHTAEGGTWTSSDPTTATIYSWRGLDNATYYELTSGNQYFYDNTGIGAN 344 (750)
T ss_dssp --STTHHHHHHHHHHHHHHHTTCEEEEEECCSSCTTCSBSSSSCSSCBBCSSHHHHHHHHHBCBCTTSSSBCCSSSSSCC
T ss_pred --CCccHHHHHHHHHHHHHHCCCEEEEEEecccccCcccccccccccCCCcccccCCCCcceEECCCCCceecCCCcCCc
Confidence 1123499999999999999999999999999999887651 1122222 246665442 4455554 489
Q ss_pred CCCCcHHHHHHHHHHHHHHHHhCCCcEEccCCccccccccCCCCCCCCCCCc-cccCCCCCch----HHHHHHHHHHH-H
Q psy9003 1097 FNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYD-EYFGLNVDTD----ALIYLMVANKF-L 1170 (1276)
Q Consensus 1097 LN~~np~Vr~~Iidsl~~Wv~eygVDGFRfD~a~~L~~~d~g~g~~~~~~~~-~~~~~~~d~~----a~~Fl~el~~~-V 1170 (1276)
||+++|+||++|+++++||++||||||||||+|..|...-. ..+.+.+. +...++.+.. ...|++.+++. +
T Consensus 345 ln~~~p~V~~~i~d~l~~W~~e~gvDGfR~D~a~~l~~~f~---~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~ 421 (750)
T 1bf2_A 345 FNTYNTVAQNLIVDSLAYWANTMGVDGFRFDLASVLGNSCL---NGAYTASAPNCPNGGYNFDAADSNVAINRILREFTV 421 (750)
T ss_dssp BCTTSHHHHHHHHHHHHHHHHTSCCCEEEETTGGGGGBCCS---SSSCCTTSTTCTTCSCCBCTTCTTSHHHHHHHHSCB
T ss_pred cccCCHHHHHHHHHHHHHHHHHcCCcEEEEechhhcCchhh---hcccccccccccccccccccccchHHHHHHHHhCcc
Confidence 99999999999999999999999999999999999853200 00000000 0000001111 14577776542 2
Q ss_pred HhhC--CCeEEEEEccCCC
Q psy9003 1171 HDKY--PEIITIAEDVSGM 1187 (1276)
Q Consensus 1171 r~~~--PdvilIAE~~s~~ 1187 (1276)
|+.. |++++|||.|...
T Consensus 422 ~~~~~g~~~~liaE~w~~~ 440 (750)
T 1bf2_A 422 RPAAGGSGLDLFAEPWAIG 440 (750)
T ss_dssp CCTTCCSSBEEEECCCCSS
T ss_pred hhhccCCCceEEeccccCC
Confidence 3335 9999999998653
|
| >2bhu_A Maltooligosyltrehalose trehalohydrolase; alpha-amylase, protein-carbohydrate complex, desiccation resistance; HET: TRS PGE; 1.1A {Deinococcus radiodurans} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 2bhy_A* 2bhz_A* 2bxy_A* 2bxz_A* 2by0_A* 2by1_A* 2by2_A* 2by3_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-47 Score=466.52 Aligned_cols=302 Identities=23% Similarity=0.292 Sum_probs=238.0
Q ss_pred CCCcccCeeecC--ceEEEEEccCCcEEEEEccCCCCccccccceecCCCeEEEEcCCCCCCCcccCcccEEEEEEEEeC
Q psy9003 769 FGTPEQLKYLVD--ECHKAGLLCFMHVVCAAGDFNNWNREEFAYKKLDFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQH 846 (1276)
Q Consensus 769 ~Gtp~G~~y~~D--~a~FalwAP~A~~VsLvGDFN~wd~~~~pM~r~~~GVWsl~Ip~~~~G~~~i~hGs~YkYrV~~~d 846 (1276)
...|.|+++..+ +++|++|||+|++|+|+++ +..++|.+...|+|++++| ... |..|+|+| +
T Consensus 21 ~~~~lGa~~~~~~~~~~f~vwap~a~~v~l~~~-----~~~~~m~~~~~g~w~~~~~-~~~-------g~~Y~~~v---~ 84 (602)
T 2bhu_A 21 PRTRLGATPLPGGAGTRFRLWTSTARTVAVRVN-----GTEHVMTSLGGGIYELELP-VGP-------GARYLFVL---D 84 (602)
T ss_dssp GGGCSEEEECGGGCCEEEEEECSSCSSEEEEET-----TEEEECEEEETTEEEEEES-CCT-------TCEEEEEE---T
T ss_pred CCCCCceEEeCCCCeEEEEEECCCCCEEEEEEc-----CCEEeCeeCCCcEEEEEEE-CCC-------CcEEEEEE---C
Confidence 345788888877 8999999999999999984 3579999888899999999 554 56999999 5
Q ss_pred CeeeeecCCcceEeecCCCCCccccceeeCCCCCCCCCcCCCCC--CCCCCceEEEEecCCccccCccCcHHHHHHhhhh
Q psy9003 847 GHLLDRLSPWATYVTEPPVVGHAYEQRIWNPKPQDKHKWTSSKP--KKPDNLKIYESHVGICTQEQKCASYEDFVRVVIP 924 (1276)
Q Consensus 847 G~~~~~~DPYAkav~~~~~~s~v~~~~~~~p~~~~~y~W~~~rp--~~~~d~vIYElHVr~ft~~~~~Gtf~gl~ek~Ld 924 (1276)
| ..+.||||+++..... + .+.+++|. .|+|....+ +.+++++|||+|||+|+. .|+|+|++++ ||
T Consensus 85 g--~~~~DPya~~~~~~~~-~---~s~v~d~~---~~~w~~~~w~~~~~~~~viYei~~~~f~~---~G~~~gi~~~-L~ 151 (602)
T 2bhu_A 85 G--VPTPDPYARFLPDGVH-G---EAEVVDFG---TFDWTDADWHGIKLADCVFYEVHVGTFTP---EGTYRAAAEK-LP 151 (602)
T ss_dssp T--EEECCTTCSCCTTCTT-S---CEECCCTT---SSCCCCTTCCCCCGGGCCEEEECHHHHSS---SCSHHHHHHT-HH
T ss_pred C--eEecCCCccccCCCCC-C---CEEEeccc---ccCCCccccccCCcccceEEEEeeccccc---CCCHHHHHHH-HH
Confidence 6 4689999988643211 1 23455553 588887644 346899999999999983 6999999986 99
Q ss_pred HHHHcCCCCCccceeecccccccccccccceeeccCccccccccccccCCCcccCCCccccccccccccccccCCCCCCc
Q psy9003 925 RIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAESHDQALVGDKTIAFWLMDKEMYTHMSTLSDPS 1004 (1276)
Q Consensus 925 yLK~LGVna~d~wV~LmP~f~~eew~~~~pi~~l~~~Pi~E~~i~~~~S~~~~~WGYdp~nyf~~d~~~y~~~S~~~Dp~ 1004 (1276)
|||+||||+ |||||+++ + + ...+|||++.+||
T Consensus 152 yl~~lGv~~----I~L~Pi~~--------------------~--~-----~~~~wGY~~~~y~----------------- 183 (602)
T 2bhu_A 152 YLKELGVTA----IQVMPLAA--------------------F--D-----GQRGWGYDGAAFY----------------- 183 (602)
T ss_dssp HHHHHTCCE----EEECCCEE--------------------C--S-----SSCCCSTTCCEEE-----------------
T ss_pred HHHHcCCCE----EEECChhh--------------------c--c-----CCCCCCcccccCc-----------------
Confidence 999999999 99995443 2 1 1246999999999
Q ss_pred ccccccccccCCCCCccccccccccCCCCCCHHHHHHHHHHHHHcCCEEEEEEeccccCCcccCCCcCCCCCCCcccccC
Q psy9003 1005 LIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDG 1084 (1276)
Q Consensus 1005 ~~~dap~~~yas~s~hkYt~D~~~ID~~~Gt~eEfK~LV~alHk~GI~VILDvV~NHt~~~~~~~~~~f~g~~~~Yy~~~ 1084 (1276)
+|+ |+||+++|||+||++||++||+||||+|+||++.++.+. ..| .+.||+..
T Consensus 184 ----~~~-------------------~~~Gt~~d~~~lv~~~H~~Gi~VilD~V~NH~~~~~~~~-~~~---~~~~~~~~ 236 (602)
T 2bhu_A 184 ----APY-------------------APYGRPEDLMALVDAAHRLGLGVFLDVVYNHFGPSGNYL-SSY---APSYFTDR 236 (602)
T ss_dssp ----EEC-------------------GGGCCHHHHHHHHHHHHHTTCEEEEEECCSCCCSSSCCH-HHH---CGGGEEEE
T ss_pred ----ccC-------------------cCCCCHHHHHHHHHHHHHCCCEEEEEecccccccCCccc-ccc---CcccccCC
Confidence 565 889999999999999999999999999999999765431 112 24466532
Q ss_pred CCCCCCCCCCcCCCCCcHHHHHHHHHHHHHHHHhCCCcEEccCCccccccccCCCCCCCCCCCccccCCCCCchHHHHHH
Q psy9003 1085 PRGTHPLWDSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLM 1164 (1276)
Q Consensus 1085 ~~g~~~~W~g~~LN~~np~Vr~~Iidsl~~Wv~eygVDGFRfD~a~~L~~~d~g~g~~~~~~~~~~~~~~~d~~a~~Fl~ 1164 (1276)
....| ++++|+++|+||++|+++++||+++|||||||||++..|... ++..||+
T Consensus 237 ---~~~~w-~~~ln~~~~~v~~~i~~~~~~W~~~~gvDGfR~D~~~~i~~~----------------------~~~~fl~ 290 (602)
T 2bhu_A 237 ---FSSAW-GMGLDYAEPHMRRYVTGNARMWLRDYHFDGLRLDATPYMTDD----------------------SETHILT 290 (602)
T ss_dssp ---EECSS-SEEECTTSHHHHHHHHHHHHHHHHHHCCSEEEETTGGGCCCC----------------------SSSCHHH
T ss_pred ---CCCCC-CCCccCCCHHHHHHHHHHHHHHHHHhCCCEEEEechHhhhcc----------------------chHHHHH
Confidence 12345 578999999999999999999999999999999999988311 1234999
Q ss_pred HHHHHHHhhCCCeEEEEEccCCCCCCccccccCCcccCccc
Q psy9003 1165 VANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDYRL 1205 (1276)
Q Consensus 1165 el~~~Vr~~~PdvilIAE~~s~~p~~~~p~~~gglGFD~~~ 1205 (1276)
++++.+++. |++++|||.|...+..+.+ +.||++.|
T Consensus 291 ~~~~~v~~~-~~~~li~E~~~~~~~~~~~----~~g~~~~~ 326 (602)
T 2bhu_A 291 ELAQEIHEL-GGTHLLLAEDHRNLPDLVT----VNHLDGIW 326 (602)
T ss_dssp HHHHHHHTT-CSCCEEEEECSSCCTHHHH----TTCCSEEE
T ss_pred HHHHHHhhc-CCeEEEEEeCCCCcccccC----CCCcceEE
Confidence 999999888 9999999999877765543 34454443
|
| >1wzl_A Alpha-amylase II; pullulan, GH-13, alpha-amylase family, hydrolase; 2.00A {Thermoactinomyces vulgaris} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 1ji2_A 1bvz_A 1vfk_A* 3a6o_A* 1wzm_A 1jf6_A 1wzk_A 2d2o_A* 1jib_A* 1jl8_A* 1vb9_A* 1g1y_A* 1vfo_A* 1vfm_A* 1vfu_A* 1jf5_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-46 Score=455.35 Aligned_cols=297 Identities=14% Similarity=0.174 Sum_probs=221.3
Q ss_pred CcccCeeecCce--EEEEEccCCcEEEE-EccCCCCcc---ccccceecC----CCeEEEEcCCCCCCCcccCcccEEEE
Q psy9003 771 TPEQLKYLVDEC--HKAGLLCFMHVVCA-AGDFNNWNR---EEFAYKKLD----FGKWELVLPPNPDGSCKLTHLSQVKL 840 (1276)
Q Consensus 771 tp~G~~y~~D~a--~FalwAP~A~~VsL-vGDFN~wd~---~~~pM~r~~----~GVWsl~Ip~~~~G~~~i~hGs~YkY 840 (1276)
.|.|..+..+.+ +|++|+|+|++|+| +|||++|+. ..++|++.. .|+|++++|+... |..|+|
T Consensus 12 ~~~~~~~~~~~~~i~~~~~~~~a~~V~l~~~d~~~~~~~~~~~~~m~~~~~~~~~~~w~~~i~~~~~-------~~~Y~f 84 (585)
T 1wzl_A 12 GSYAYPISETQLRVRLRAKKGDVVRCEVLYADRYASPEEELAHALAGKAGSDERFDYFEALLECSTK-------RVKYVF 84 (585)
T ss_dssp TTTEEEEETTEEEEEEEEETTTCSEEEEEEECTTCCTTSCCEEEECEEEEECSSEEEEEEEEECTTS-------CEEEEE
T ss_pred CCceeecCCCEEEEEEEECCCCccEEEEEECCCcCCCCCceEEEEEEEeecCCCEEEEEEEEECCCC-------eEEEEE
Confidence 344555555555 56688999999999 599999986 689998732 4679999997654 579999
Q ss_pred EEEEeCCeeeeecCCcceEeecCCCCCccccceeeCCCCCCCCCcCCC---CCCCCCCceEEEEecCCccccC-------
Q psy9003 841 VVRNQHGHLLDRLSPWATYVTEPPVVGHAYEQRIWNPKPQDKHKWTSS---KPKKPDNLKIYESHVGICTQEQ------- 910 (1276)
Q Consensus 841 rV~~~dG~~~~~~DPYAkav~~~~~~s~v~~~~~~~p~~~~~y~W~~~---rp~~~~d~vIYElHVr~ft~~~------- 910 (1276)
+|...+|++.. .+|++........ .++. .| +.|..+ .|.++++++|||+|||+|+..+
T Consensus 85 ~i~~~~g~~~~-~~~~~~~~~~~~~--~~~~----~~-----~~~~~~~~~~~~W~~~~viYqi~~~~F~~~~~~~~~~~ 152 (585)
T 1wzl_A 85 LLTGPQGEAVY-FGETGFSAERSKA--GVFQ----YA-----YIHRSEVFTTPEWAKEAVIYQIFPERFANGDPSNDPPG 152 (585)
T ss_dssp EEECTTSCEEE-EETTEEESSHHHH--CCEE----EC-----CCCGGGSCCCCSGGGGCCEEEECGGGTCCCCGGGCCTT
T ss_pred EEEeCCCcEEE-EcCCcccccCCcC--ccee----ee-----eeccccccCCcchhccceEEEEcchhhcCCCccccccc
Confidence 99866676543 3677755431111 1111 12 123221 2234589999999999995321
Q ss_pred ---------------ccCcHHHHHHhhhhHHHHcCCCCCccceeecccccccccccccceeeccCccccccccccccCCC
Q psy9003 911 ---------------KCASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAESHD 975 (1276)
Q Consensus 911 ---------------~~Gtf~gl~ek~LdyLK~LGVna~d~wV~LmP~f~~eew~~~~pi~~l~~~Pi~E~~i~~~~S~~ 975 (1276)
..|+|+|++++ |||||+||||+ |||||+| +. +
T Consensus 153 ~~~w~~~~~~~~~~f~~G~~~gi~~~-LdyLk~LGvt~----I~L~Pi~--------------------~~--~------ 199 (585)
T 1wzl_A 153 TEQWAKDARPRHDSFYGGDLKGVIDR-LPYLEELGVTA----LYFTPIF--------------------AS--P------ 199 (585)
T ss_dssp CCCCCTTCCCCTTCCCCCCHHHHHHT-HHHHHHHTCCE----EEECCCE--------------------EC--S------
T ss_pred ccccCccCCCcccccCCCCHHHHHHH-hHHHHHcCCCE----EEECCcc--------------------cC--C------
Confidence 14899999996 99999999999 9999444 32 1
Q ss_pred cccCCCccccccccccccccccCCCCCCcccccccccccCCCCCccccccccccCCCCCCHHHHHHHHHHHHHcCCEEEE
Q psy9003 976 QALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLYVLL 1055 (1276)
Q Consensus 976 ~~~WGYdp~nyf~~d~~~y~~~S~~~Dp~~~~dap~~~yas~s~hkYt~D~~~ID~~~Gt~eEfK~LV~alHk~GI~VIL 1055 (1276)
.+|||++.||| +++ |+||+++|||+||++||++||+|||
T Consensus 200 -~~~GYd~~dy~---------------------~id-------------------~~~Gt~~dfk~lv~~~H~~Gi~Vil 238 (585)
T 1wzl_A 200 -SHHKYDTADYL---------------------AID-------------------PQFGDLPTFRRLVDEAHRRGIKIIL 238 (585)
T ss_dssp -SSSCCSCSEEE---------------------EEC-------------------TTTCCHHHHHHHHHHHHTTTCEEEE
T ss_pred -CCCCcCccccc---------------------ccC-------------------cccCCHHHHHHHHHHHHHCCCEEEE
Confidence 35999999999 555 8999999999999999999999999
Q ss_pred EEeccccCCcccCCCcCC----CCCCCccccc-C-C-----CCCCCCCC-----CcCCCCCcHHHHHHHHHHHHHHHHhC
Q psy9003 1056 DVVHSHASKNVLDGLNEF----DGTQACFFHD-G-P-----RGTHPLWD-----SRLFNYSEIEVLRFLLSNLRWYLDEY 1119 (1276)
Q Consensus 1056 DvV~NHt~~~~~~~~~~f----~g~~~~Yy~~-~-~-----~g~~~~W~-----g~~LN~~np~Vr~~Iidsl~~Wv~ey 1119 (1276)
|+|+||++.++.|+.... +...+.||.. + + ++.+..|. .++||++||+||++|+++++||+ +|
T Consensus 239 D~V~NH~~~~~~~f~~~~~~g~~s~y~~~y~~~~~~~~~~~~~~y~~~~~~~~~~pdln~~~~~vr~~l~~~~~~Wl-~~ 317 (585)
T 1wzl_A 239 DAVFNHAGDQFFAFRDVLQKGEQSRYKDWFFIEDFPVSKTSRTNYETFAVQVPAMPKLRTENPEVKEYLFDVARFWM-EQ 317 (585)
T ss_dssp EECCSBCCTTSHHHHHHHHHGGGCTTGGGBCBSSSSCCCSSCCSBCBSSSSCTTCBBBCTTSHHHHHHHHHHHHHHH-HT
T ss_pred EEcCCcCCCccHHHHHHHhcCCCCCccCceEecCCCCCCCCCCCeeEcccCCCCCCeeCcCCHHHHHHHHHHHHHHH-hC
Confidence 999999999876432110 1111234432 1 1 12334443 37899999999999999999999 89
Q ss_pred CCcEEccCCccccccccCCCCCCCCCCCccccCCCCCchHHHHHHHHHHHHHhhCCCeEEEEEccCCC
Q psy9003 1120 QFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGM 1187 (1276)
Q Consensus 1120 gVDGFRfD~a~~L~~~d~g~g~~~~~~~~~~~~~~~d~~a~~Fl~el~~~Vr~~~PdvilIAE~~s~~ 1187 (1276)
||||||||+|..+ +.+||+++++.+++.+|++++|||.|...
T Consensus 318 gvDGfR~D~a~~~--------------------------~~~f~~~~~~~v~~~~p~~~~igE~~~~~ 359 (585)
T 1wzl_A 318 GIDGWRLDVANEV--------------------------DHAFWREFRRLVKSLNPDALIVGEIWHDA 359 (585)
T ss_dssp TCCEEEETTGGGS--------------------------CHHHHHHHHHHHHHHCTTCEEEECCSSCC
T ss_pred CCeEEEEeccccC--------------------------CHHHHHHHHHHHHHHCCCEEEEEEecCch
Confidence 9999999998766 24699999999999999999999988654
|
| >1ea9_C Cyclomaltodextrinase; hydrolase, glycosidase; 3.2A {Bacillus SP} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-47 Score=460.55 Aligned_cols=299 Identities=20% Similarity=0.281 Sum_probs=221.5
Q ss_pred cCeeecCce--EEEEEccCCcEEEE-EccCCCCcc--ccccceec-C---CCeEEEEcCCCCCCCcccCcccEEEEEEEE
Q psy9003 774 QLKYLVDEC--HKAGLLCFMHVVCA-AGDFNNWNR--EEFAYKKL-D---FGKWELVLPPNPDGSCKLTHLSQVKLVVRN 844 (1276)
Q Consensus 774 G~~y~~D~a--~FalwAP~A~~VsL-vGDFN~wd~--~~~pM~r~-~---~GVWsl~Ip~~~~G~~~i~hGs~YkYrV~~ 844 (1276)
+..+..+.+ +|++|+|+|++|+| +||++.|++ ..++|++. . .|+|++++|+... |..|+|+|..
T Consensus 15 ~~~~~~~~~~~~~~~~~~~a~~V~l~~~d~~~~~~~~~~~~M~~~~~~~~~~~w~~~i~~~~~-------~~~Y~f~i~~ 87 (583)
T 1ea9_C 15 SYAYNGTTVHLRIRTKKDDMTAVYALAGDKYMWDHTMEYVPMTKLATDELFDYWECEVTPPYR-------RVKYGFLLQQ 87 (583)
T ss_dssp SEESSSSCEECCCEECTTCCSBEEEEEECSSSCTTTCEEEEECEEEECSSCEEECCEECCTTS-------CEEECBCCEE
T ss_pred eEecCCCEEEEEEEECCCCccEEEEEECCCcCCCCcEEEEEEEEEeccCCeEEEEEEEECCCc-------eEEEEEEEEe
Confidence 333444444 47799999999999 599999986 68999873 2 4679999997754 4799999987
Q ss_pred eCCeeeeecCCcceEeecCCCCCccccceeeCCCCCCCCCcCCCCCCCCCCceEEEEecCCccccC--------------
Q psy9003 845 QHGHLLDRLSPWATYVTEPPVVGHAYEQRIWNPKPQDKHKWTSSKPKKPDNLKIYESHVGICTQEQ-------------- 910 (1276)
Q Consensus 845 ~dG~~~~~~DPYAkav~~~~~~s~v~~~~~~~p~~~~~y~W~~~rp~~~~d~vIYElHVr~ft~~~-------------- 910 (1276)
.+|..+...||++.. .....+.+++.....+. -.| ..|.++++++|||+|+|+|+..+
T Consensus 88 ~~~~~~~~~d~~~~~--~~~~~~~~~~~~~~~~~----~~~--~~~~W~~~~viYqi~~~~F~~~~~~~~~~~~~~w~~~ 159 (583)
T 1ea9_C 88 GHEKRWMTEYDFLTE--PPANPDRLFEYPFINPV----DVF--QPPAWVKDAIFYQIFPERFANGDTRNDPEGTLPWGSA 159 (583)
T ss_dssp TTEECCBCSSSBCSS--CCSCGGGSEEECCCCTT----TSC--CCCTHHHHCCCCEECSTTSCCCCSCSCSSCCSCCCSS
T ss_pred CCEEEEEeCCCcccc--CcccCCcceeeeeeccc----ccC--CCCcccccceEEEEchHHhcCCCCccCccccccccCC
Confidence 666666788888864 21112222221111111 012 11223478999999999995321
Q ss_pred -------ccCcHHHHHHhhhhHHHHcCCCCCccceeecccccccccccccceeeccCccccccccccccCCCcccCCCcc
Q psy9003 911 -------KCASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAESHDQALVGDKT 983 (1276)
Q Consensus 911 -------~~Gtf~gl~ek~LdyLK~LGVna~d~wV~LmP~f~~eew~~~~pi~~l~~~Pi~E~~i~~~~S~~~~~WGYdp 983 (1276)
..|+|+|++++ |||||+||||+ |||||+| +. ..+|||++
T Consensus 160 ~~~~~~~~~Gd~~gi~~~-LdyLk~LGvt~----I~L~Pi~--------------------~~---------~~~~GYd~ 205 (583)
T 1ea9_C 160 DPTPSCFFGGDLQGVIDH-LDHLSKLGVNA----VYFTPLF--------------------KA---------TTNHKYDT 205 (583)
T ss_dssp SCCCSSCCCCCHHHHHHT-HHHHHHHTCSE----EEECCCS--------------------SC---------SSSSTTSC
T ss_pred CCcccccCCcCHHHHHHh-hHHHHHcCCCE----EEECCCc--------------------cC---------CCCCCcCc
Confidence 14899999996 99999999999 9999544 32 13599999
Q ss_pred ccccccccccccccCCCCCCcccccccccccCCCCCccccccccccCCCCCCHHHHHHHHHHHHHcCCEEEEEEeccccC
Q psy9003 984 IAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHAS 1063 (1276)
Q Consensus 984 ~nyf~~d~~~y~~~S~~~Dp~~~~dap~~~yas~s~hkYt~D~~~ID~~~Gt~eEfK~LV~alHk~GI~VILDvV~NHt~ 1063 (1276)
.||| +++ |+||+++|||+||++||++||+||||+|+||++
T Consensus 206 ~dy~---------------------~id-------------------p~~Gt~~df~~lv~~~H~~Gi~VilD~V~NH~~ 245 (583)
T 1ea9_C 206 EDYF---------------------QID-------------------PQFGDKDTLKKLVDLCHERGIRVLLDAVFNHSG 245 (583)
T ss_dssp SCTT---------------------CCC-------------------TTTCCHHHHHHHHHHHTTTTCEEEEECCCSBCC
T ss_pred cccc---------------------ccC-------------------cccCCHHHHHHHHHHHHHCCCEEEEEEccccCC
Confidence 9999 555 899999999999999999999999999999999
Q ss_pred CcccCCCcCCC-C---CCCccccc-C-C------CCCCCCCCC----cCCCCCcHHHHHHHHHHHHHHHHhCCCcEEccC
Q psy9003 1064 KNVLDGLNEFD-G---TQACFFHD-G-P------RGTHPLWDS----RLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFD 1127 (1276)
Q Consensus 1064 ~~~~~~~~~f~-g---~~~~Yy~~-~-~------~g~~~~W~g----~~LN~~np~Vr~~Iidsl~~Wv~eygVDGFRfD 1127 (1276)
.++.++..... | ..+.||.. + + .+.+..|.+ ++||++||+||++|+++++||+++|||||||||
T Consensus 246 ~~~~~f~~~~~~g~~s~y~~~y~~~~~~~~~~~~~~~y~~~~~~~~~pdln~~~p~Vr~~l~~~~~~W~~~~gvDGfR~D 325 (583)
T 1ea9_C 246 RTFPPFVDVLKNGEKSKYKDWFHIRSLPLEVVDGIPTYDTFAFEPLMPKLNTEHPDVKEYLLKAAEYWIRETGIDGWRLD 325 (583)
T ss_dssp TTTHHHHHHHTTTTTCTTTTSSCBCSSSCCCTTSCCSBCBSSSCTTSBBCCTTSHHHHHHHHHHHHHHHHHHCCSEEEET
T ss_pred CccHHHHHHHhcCCCCCccCceEecCCCCCCCCCCCCceecCCCCCcceeccCCHHHHHHHHHHHHHHHHhcCceEEEec
Confidence 98764321111 1 11234432 1 1 123334432 589999999999999999999999999999999
Q ss_pred CccccccccCCCCCCCCCCCccccCCCCCchHHHHHHHHHHHHHhhCCCeEEEEEccCCC
Q psy9003 1128 GVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGM 1187 (1276)
Q Consensus 1128 ~a~~L~~~d~g~g~~~~~~~~~~~~~~~d~~a~~Fl~el~~~Vr~~~PdvilIAE~~s~~ 1187 (1276)
+|..+ +.+||+++++.+++.+|++++|||.|...
T Consensus 326 ~~~~~--------------------------~~~f~~~~~~~v~~~~p~~~~igE~~~~~ 359 (583)
T 1ea9_C 326 VANEV--------------------------SHQFWREFRRVVKQANPDAYILGEVWHES 359 (583)
T ss_dssp TCTTS--------------------------CHHHHHHHHHHHHHHCTTCEEEECCCSCC
T ss_pred ccccC--------------------------CHHHHHHHHHHHHhhCCCeEEEEEEcCCh
Confidence 98766 24699999999999999999999988643
|
| >1j0h_A Neopullulanase; beta-alpha-barrels, hydrolase; 1.90A {Geobacillus stearothermophilus} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 1j0i_A* 1j0j_A* 1j0k_A* 1sma_A 1gvi_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-46 Score=452.98 Aligned_cols=312 Identities=17% Similarity=0.207 Sum_probs=226.0
Q ss_pred cCeeecCce--EEEEEccCCcEEEE-EccCCCCcc-----ccccceecC----CCeEEEEcCCCCCCCcccCcccEEEEE
Q psy9003 774 QLKYLVDEC--HKAGLLCFMHVVCA-AGDFNNWNR-----EEFAYKKLD----FGKWELVLPPNPDGSCKLTHLSQVKLV 841 (1276)
Q Consensus 774 G~~y~~D~a--~FalwAP~A~~VsL-vGDFN~wd~-----~~~pM~r~~----~GVWsl~Ip~~~~G~~~i~hGs~YkYr 841 (1276)
+..+..+.+ +|++|+|+|++|+| +||++.|+. ..++|++.. .|+|++++|+... |..|+|+
T Consensus 15 ~~~~~~~~~~i~~~~~~~~a~~V~l~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~w~~~v~~~~~-------~~~Y~f~ 87 (588)
T 1j0h_A 15 AYAYDSETLHLRLRTKKDDIDRVELLHGDPYDWQNGAWQFQMMPMRKTGSDELFDYWFAEVKPPYR-------RLRYGFV 87 (588)
T ss_dssp EEESSSSCEEEEEEEETTTCSEEEEEEECTTCEETTEECCEEEECEEEEECSSEEEEEEEECCTTS-------CEEEEEE
T ss_pred eEecCCCEEEEEEEECCCCccEEEEEECCCCCccccccceEEEEeEEeecCCCeEEEEEEEECCCc-------EEEEEEE
Confidence 333334444 57779999999999 599998865 579998743 4689999997654 4799999
Q ss_pred EEEeCCeeeeecCCcceEeecCCCCCccccceeeCCCCCCCCCcCCCC-CC-CCCCceEEEEecCCccccC---------
Q psy9003 842 VRNQHGHLLDRLSPWATYVTEPPVVGHAYEQRIWNPKPQDKHKWTSSK-PK-KPDNLKIYESHVGICTQEQ--------- 910 (1276)
Q Consensus 842 V~~~dG~~~~~~DPYAkav~~~~~~s~v~~~~~~~p~~~~~y~W~~~r-p~-~~~d~vIYElHVr~ft~~~--------- 910 (1276)
|...+|..+...||+....... ..+..+. . | .+.|.... ++ ++++++|||+|||+|....
T Consensus 88 i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~-~----~~~~~~~~~~~~W~~~~viYqi~~~~F~~~~~~~~~~~~~ 158 (588)
T 1j0h_A 88 LYSGEEKLVYTEKGFYFEVPTD-DTAYYFC---F-P----FLHRVDLFEAPDWVKDTVWYQIFPERFANGNPSISPEGSR 158 (588)
T ss_dssp EEETTEEEEEETTEEESSCCCS-CSTTSEE---E-C----CCCGGGSCCCCGGGGGCCEEEECGGGTCCSCGGGSCTTCC
T ss_pred EEeCCEEEEEECCCccccCCcc-cCCCceE---e-e----eecccccCCCCccccccEEEEEcchhhcCCCCCcCccccc
Confidence 9876666677888876422111 1111111 1 1 11333222 23 4489999999999995321
Q ss_pred ------------ccCcHHHHHHhhhhHHHHcCCCCCccceeecccccccccccccceeeccCccccccccccccCCCccc
Q psy9003 911 ------------KCASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAESHDQAL 978 (1276)
Q Consensus 911 ------------~~Gtf~gl~ek~LdyLK~LGVna~d~wV~LmP~f~~eew~~~~pi~~l~~~Pi~E~~i~~~~S~~~~~ 978 (1276)
..|+|+|++++ |||||+||||+ |||||+| +. ..+
T Consensus 159 ~w~~~~~~~~~~~~G~~~gi~~~-LdyLk~LGvt~----I~L~Pi~--------------------~~---------~~~ 204 (588)
T 1j0h_A 159 PWGSEDPTPTSFFGGDLQGIIDH-LDYLVDLGITG----IYLTPIF--------------------RS---------PSN 204 (588)
T ss_dssp CTTSSCCCSSCCCCCCHHHHHHT-HHHHHHHTCCE----EEECCCE--------------------EC---------SSS
T ss_pred ccCCCCCcccccCCCCHHHHHHH-HHHHHHcCCCE----EEECCcc--------------------cC---------CCC
Confidence 25899999996 99999999999 9999444 32 135
Q ss_pred CCCccccccccccccccccCCCCCCcccccccccccCCCCCccccccccccCCCCCCHHHHHHHHHHHHHcCCEEEEEEe
Q psy9003 979 VGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVV 1058 (1276)
Q Consensus 979 WGYdp~nyf~~d~~~y~~~S~~~Dp~~~~dap~~~yas~s~hkYt~D~~~ID~~~Gt~eEfK~LV~alHk~GI~VILDvV 1058 (1276)
|||++.||| +++ |+||+++|||+||++||++||+||||+|
T Consensus 205 ~GYd~~dy~---------------------~id-------------------p~~Gt~~df~~lv~~~H~~Gi~VilD~V 244 (588)
T 1j0h_A 205 HKYDTADYF---------------------EVD-------------------PHFGDKETLKTLIDRCHEKGIRVMLDAV 244 (588)
T ss_dssp SCCSCSEEE---------------------EEC-------------------TTTCCHHHHHHHHHHHHHTTCEEEEEEC
T ss_pred CCcCccccC---------------------ccC-------------------ccCCCHHHHHHHHHHHHHCCCEEEEEEC
Confidence 999999999 555 8999999999999999999999999999
Q ss_pred ccccCCcccCCCcC----CCCCCCcccccCC-------CCCCCCCC----CcCCCCCcHHHHHHHHHHHHHHHHhCCCcE
Q psy9003 1059 HSHASKNVLDGLNE----FDGTQACFFHDGP-------RGTHPLWD----SRLFNYSEIEVLRFLLSNLRWYLDEYQFDG 1123 (1276)
Q Consensus 1059 ~NHt~~~~~~~~~~----f~g~~~~Yy~~~~-------~g~~~~W~----g~~LN~~np~Vr~~Iidsl~~Wv~eygVDG 1123 (1276)
+||++.+++++... -.+..+.||.... .+.+..|. .++||++||+||++|+++++||+++|||||
T Consensus 245 ~NH~~~~~~~f~~~~~~g~~s~y~dwy~~~~~~~~~~~~~~y~~~~~~~~~pdLn~~np~Vr~~l~~~~~~Wl~~~giDG 324 (588)
T 1j0h_A 245 FNHCGYEFAPFQDVWKNGESSKYKDWFHIHEFPLQTEPRPNYDTFAFVPQMPKLNTANPEVKRYLLDVATYWIREFDIDG 324 (588)
T ss_dssp CSBCCTTCHHHHHHHHHGGGCTTGGGBCBSSSSCCCSSSCSBCBSTTCTTSBBBCTTSHHHHHHHHHHHHHHHHHHCCCE
T ss_pred cCcCcccchhHHHHHhcCCCCCcccccccccCCCCCCCCCCeEEecCCCCccccccCCHHHHHHHHHHHHHHHHhcCCcE
Confidence 99999887542110 0111123333211 12222222 378999999999999999999999999999
Q ss_pred EccCCccccccccCCCCCCCCCCCccccCCCCCchHHHHHHHHHHHHHhhCCCeEEEEEccCCCCCCccccccCCcccCc
Q psy9003 1124 FRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDY 1203 (1276)
Q Consensus 1124 FRfD~a~~L~~~d~g~g~~~~~~~~~~~~~~~d~~a~~Fl~el~~~Vr~~~PdvilIAE~~s~~p~~~~p~~~gglGFD~ 1203 (1276)
||||+|..+ +..||+++++.+++.+|++++|||.|..... + .+|.|||+
T Consensus 325 fR~D~a~~~--------------------------~~~f~~~~~~~v~~~~p~~~~igE~~~~~~~----~-~~g~~~d~ 373 (588)
T 1j0h_A 325 WRLDVANEI--------------------------DHEFWREFRQEVKALKPDVYILGEIWHDAMP----W-LRGDQFDA 373 (588)
T ss_dssp EEETTGGGS--------------------------CHHHHHHHHHHHHHHCTTCEEEECCSSCCGG----G-CSSSSCSE
T ss_pred EEEeccccC--------------------------CHHHHHHHHHHHHHhCCCeEEEEEecCchhh----h-hcCCCcCE
Confidence 999998766 2469999999999999999999998865322 1 13456665
Q ss_pred ccC
Q psy9003 1204 RLV 1206 (1276)
Q Consensus 1204 ~~n 1206 (1276)
.||
T Consensus 374 ~~n 376 (588)
T 1j0h_A 374 VMN 376 (588)
T ss_dssp EBC
T ss_pred EEC
Confidence 554
|
| >4aio_A Limit dextrinase; hydrolase, pullulanase, glycoside hydrolase family 13; 1.90A {Hordeum vulgare} PDB: 2x4c_A* 2y4s_A* 2y5e_A* 2x4b_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-46 Score=467.42 Aligned_cols=324 Identities=16% Similarity=0.152 Sum_probs=233.7
Q ss_pred hHhhccccCCCCCcccCeeecCceEEEEEccCCcEEEEEccCCCCccc-cccceecCCCeEEEEcCCCCCCCcccCcccE
Q psy9003 759 LVDECHKAGLFGTPEQLKYLVDECHKAGLLCFMHVVCAAGDFNNWNRE-EFAYKKLDFGKWELVLPPNPDGSCKLTHLSQ 837 (1276)
Q Consensus 759 F~~~Y~~~G~~Gtp~G~~y~~D~a~FalwAP~A~~VsLvGDFN~wd~~-~~pM~r~~~GVWsl~Ip~~~~G~~~i~hGs~ 837 (1276)
+++.|.+- .|+|+++..++++|+||||+|++|+|++.++.|... ..+|.++.+|+|++++|+...| .+
T Consensus 119 ~d~~~~y~----~plGa~~~~~g~~F~vwAp~A~~V~l~l~~~~~~~~~~~~~~~~~~g~W~~~~~~~~~g-------~~ 187 (884)
T 4aio_A 119 LDDMFAYT----GPLGAVFSEDSVSLHLWAPTAQGVSVCFFDGPAGPALETVQLKESNGVWSVTGPREWEN-------RY 187 (884)
T ss_dssp HHHHHCCC----SCCEEEECSSEEEEEEECTTCSEEEEEEESTTTSCEEEEEECEEETTEEEEEEEGGGTT-------CE
T ss_pred cccccccC----CCccCEEECCEEEEEEECCCCCEEEEEEEeCCCCCeeeeeeecCCCCEEEEEECCCCCC-------CE
Confidence 45566552 399999999999999999999999999854544432 3445566789999999987665 69
Q ss_pred EEEEEEEeCC---ee--eeecCCcceEeecCCCCCcccc--ceeeCCCCCCCCCcCCC-CCC--CCCCceEEEEecCCcc
Q psy9003 838 VKLVVRNQHG---HL--LDRLSPWATYVTEPPVVGHAYE--QRIWNPKPQDKHKWTSS-KPK--KPDNLKIYESHVGICT 907 (1276)
Q Consensus 838 YkYrV~~~dG---~~--~~~~DPYAkav~~~~~~s~v~~--~~~~~p~~~~~y~W~~~-rp~--~~~d~vIYElHVr~ft 907 (1276)
|+|+|...++ .+ ..++||||+++..++..+.+.+ ...+.|. .++|..+ +|+ .+++++|||+|||+||
T Consensus 188 Y~y~v~~~~~~~~~~~~~~~~DPya~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~p~~~~~~~~vIYE~HVr~ft 264 (884)
T 4aio_A 188 YLYEVDVYHPTKAQVLKCLAGDPYARSLSANGARTWLVDINNETLKPA---SWDELADEKPKLDSFSDITIYELHIRDFS 264 (884)
T ss_dssp EEEEEEEEETTTTEEEEEEECCTTCSEESGGGSSEECCCTTCGGGSCT---TGGGGGGTSCCCSCGGGCCEEEECHHHHH
T ss_pred EEEEEeCCCCCcccccCccccCCCeeeeccCCCCeeEecCccCccCcc---cccccccccCCCCCcccCEEEEEEcCccc
Confidence 9999987543 33 3578999999988777666554 2345554 3555443 443 4589999999999997
Q ss_pred c------cCccCcHHHHHH------hhhhHHHHcCCCCCccceeecccccccccccccceeec-cCcccc---------c
Q psy9003 908 Q------EQKCASYEDFVR------VVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTL-TNRRYM---------E 965 (1276)
Q Consensus 908 ~------~~~~Gtf~gl~e------k~LdyLK~LGVna~d~wV~LmP~f~~eew~~~~pi~~l-~~~Pi~---------E 965 (1276)
. ...+|||.|+.+ ++|||||+||||+ |||||+|++..-.-.+..... +...+. +
T Consensus 265 ~~~~~~~~~~~Gtf~g~~~~~~~~ie~L~yLk~LGVta----veLmPv~e~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~ 340 (884)
T 4aio_A 265 AHDGTVDSDSRGGFRAFAYQASAGMEHLRKLSDAGLTH----VHLLPSFHFAGVDDIKSNWKFVDECELATFPPGSDMQQ 340 (884)
T ss_dssp TTCTTSCTTTTTSGGGGSCTTSHHHHHHHHHHHHTCCE----EEECCCEEESSSCSCGGGCCCCCHHHHTTSCTTCSHHH
T ss_pred cCCCCCCccccCcccccccchhhHHHHhHHHHHcCCCE----EEeccccccCccccccccccccccccccccCCchHHHH
Confidence 3 457899998742 2499999999999 999999986321110000000 000000 0
Q ss_pred cccccccCCCcccCCCccccccccccccccccCCCCCCcccccccccccCCCCCccccccccccCCCCCCHHHHHHHHHH
Q psy9003 966 KTVAYAESHDQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDE 1045 (1276)
Q Consensus 966 ~~i~~~~S~~~~~WGYdp~nyf~~d~~~y~~~S~~~Dp~~~~dap~~~yas~s~hkYt~D~~~ID~~~Gt~eEfK~LV~a 1045 (1276)
...........++|||++.+|| +|+++|+++. ...++++|||+||++
T Consensus 341 ~l~~~~~~~~~~~WGYd~~~y~---------------------a~~~~ygt~~------------d~~~~~~efk~LV~~ 387 (884)
T 4aio_A 341 AAVVAIQEEDPYNWGYNPVLWG---------------------VPKGSYASDP------------DGPSRIIEYRQMVQA 387 (884)
T ss_dssp HHHHHHTTTSSCCCCCCEEEEE---------------------EECGGGSSCS------------STTHHHHHHHHHHHH
T ss_pred hhhhhhhhccccccCcCccccc---------------------CCCcccccCc------------cccchHHHHHHHHHH
Confidence 0000001124678999999999 7787787742 222568999999999
Q ss_pred HHHcCCEEEEEEeccccCCcccCCCc-CCCCCCCcc-cccCCCCCCCC-CCCcCCCCCcHHHHHHHHHHHHHHHHhCCCc
Q psy9003 1046 CHKAGLYVLLDVVHSHASKNVLDGLN-EFDGTQACF-FHDGPRGTHPL-WDSRLFNYSEIEVLRFLLSNLRWYLDEYQFD 1122 (1276)
Q Consensus 1046 lHk~GI~VILDvV~NHt~~~~~~~~~-~f~g~~~~Y-y~~~~~g~~~~-W~g~~LN~~np~Vr~~Iidsl~~Wv~eygVD 1122 (1276)
||++||+||||+|+|||+.+++|+.. .+++..++| |...+++...+ |.++.+|+++|+|+++++++++||+++||+|
T Consensus 388 aH~~GIkVIlDvV~NHts~~h~wf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~w~~~~~vD 467 (884)
T 4aio_A 388 LNRIGLRVVMDVVYNHLDSSGPCGISSVLDKIVPGYYVRRDTNGQIENSAAMNNTASEHFMVDRLIVDDLLNWAVNYKVD 467 (884)
T ss_dssp HHHTTCEEEEEECCSBCSCCSSSSTTCCHHHHSTTTSBCBCTTSCBCCTTSSSBBCTTSHHHHHHHHHHHHHHHHHSCCC
T ss_pred HHhcCCceeeeeccccccCCCcchhhccccccCcceeeccCCCCCccCcCCccccCCCCchhhhhhhhhhhhhhhhcccc
Confidence 99999999999999999999988643 334444433 34444554433 3468899999999999999999999999999
Q ss_pred EEccCCccccc
Q psy9003 1123 GFRFDGVTSML 1133 (1276)
Q Consensus 1123 GFRfD~a~~L~ 1133 (1276)
|||||++..+.
T Consensus 468 g~R~D~~~~~~ 478 (884)
T 4aio_A 468 GFRFDLMGHIM 478 (884)
T ss_dssp EEEETTGGGSB
T ss_pred cCCcccchhhh
Confidence 99999998874
|
| >1ji1_A Alpha-amylase I; beta/alpha barrel, hydrolase; 1.60A {Thermoactinomyces vulgaris} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 1uh3_A* 2d0f_A* 1izj_A 1uh4_A* 1uh2_A* 2d0g_A* 2d0h_A* 1izk_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-44 Score=442.63 Aligned_cols=303 Identities=14% Similarity=0.104 Sum_probs=222.8
Q ss_pred CcccCeeecCceEEEEE----ccCCcEEEEEccCCCCcccccccee--c----CCCeEEEEcCCCCCCCcccCcccEEEE
Q psy9003 771 TPEQLKYLVDECHKAGL----LCFMHVVCAAGDFNNWNREEFAYKK--L----DFGKWELVLPPNPDGSCKLTHLSQVKL 840 (1276)
Q Consensus 771 tp~G~~y~~D~a~Falw----AP~A~~VsLvGDFN~wd~~~~pM~r--~----~~GVWsl~Ip~~~~G~~~i~hGs~YkY 840 (1276)
.|.|+ ...++++|+|| ||+|++|+|++++++ +...++|.+ . ..|+|++++|+... |..|+|
T Consensus 22 ~~~Ga-~~~~~v~f~v~~~~~ap~a~~V~l~~~~~~-~~~~~~m~~~~~~~~~~~~~w~~~i~~~~~-------g~~Y~f 92 (637)
T 1ji1_A 22 NAPEP-TSTQSVTLKLRTFKGDITSANIKYWDTADN-AFHWVPMVWDSNDPTGTFDYWKGTIPASPS-------IKYYRF 92 (637)
T ss_dssp SCSSC-CTTCCEEEEEEEETTCCSEEEEEEEETTTT-EEEEEECEEEEECTTSSEEEEEEEECCCSS-------CEEEEE
T ss_pred cCCCC-CCCCEEEEEEEEecCcCCeeEEEEEEecCC-CEEEEEeEEeeccccCCeeEEEEEEECCCc-------eEEEEE
Confidence 35555 45678999999 999999999987763 445789987 2 45899999997755 469999
Q ss_pred EEEEeCCeeeeecCCcceEeecCCCCCccccceeeCCCCCCCCCcCCC-CCC-CCCCceEEEEecCCccccC--------
Q psy9003 841 VVRNQHGHLLDRLSPWATYVTEPPVVGHAYEQRIWNPKPQDKHKWTSS-KPK-KPDNLKIYESHVGICTQEQ-------- 910 (1276)
Q Consensus 841 rV~~~dG~~~~~~DPYAkav~~~~~~s~v~~~~~~~p~~~~~y~W~~~-rp~-~~~d~vIYElHVr~ft~~~-------- 910 (1276)
+|.+.++.. ..+|.. +... +|. ...|.|... .++ ++++++|||+|++.|+...
T Consensus 93 ~i~~~~~~~--~~~~~g--~~~~------------~~~-~~~~~~~~~~~~~~W~~~~viYqi~~~~F~~~~~~~~~~~~ 155 (637)
T 1ji1_A 93 QINDGTSTA--WYNGNG--PSST------------EPN-ADDFYIIPNFKTPDWLKNGVMYQIFPDRFYNGDSSNDVQTG 155 (637)
T ss_dssp EEEETTEEE--EEETTE--EESS------------CCS-SCCEEECTTCCCCHHHHHCCEEEECGGGTCCSCGGGCCCTT
T ss_pred EEEECCeEE--EEeCCc--cccc------------CCC-cceeEeecCCCCCchhhCCcEEEEecccccCCCCccccccc
Confidence 998654432 233432 1110 010 001233221 112 3378999999999996311
Q ss_pred -------------------------c-----cCcHHHHHHhhhhHHHH-cCCCCCccceeecccccccccccccceeecc
Q psy9003 911 -------------------------K-----CASYEDFVRVVIPRIVK-QGMAIPDKWIELLKKFKDEDWNMGNIVHTLT 959 (1276)
Q Consensus 911 -------------------------~-----~Gtf~gl~ek~LdyLK~-LGVna~d~wV~LmP~f~~eew~~~~pi~~l~ 959 (1276)
. .|+|+|++++ |||||+ ||||+ |||||+
T Consensus 156 ~~~~~~~~~~~~~w~~~~~~~~~~~~~~~f~gG~~~gi~~~-LdyLk~~LGvt~----I~L~Pi---------------- 214 (637)
T 1ji1_A 156 SYTYNGTPTEKKAWGSSVYADPGYDNSLVFFGGDLAGIDQK-LGYIKKTLGANI----LYLNPI---------------- 214 (637)
T ss_dssp SCEETTEECEECCTTSCCSCCTTSCGGGEECCCCHHHHHHT-HHHHHTTTCCCE----EEESCC----------------
T ss_pred ccccccccccccccccCcccccccCCcccccCcCHHHHHHh-HHHHHhccCCCE----EEECCC----------------
Confidence 1 2999999996 999999 99999 999944
Q ss_pred CccccccccccccCCCcccCCCccccccccccccccccCCCCCCcccccccccccCCCCCccccccccccCCCCCCHHHH
Q psy9003 960 NRRYMEKTVAYAESHDQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQL 1039 (1276)
Q Consensus 960 ~~Pi~E~~i~~~~S~~~~~WGYdp~nyf~~d~~~y~~~S~~~Dp~~~~dap~~~yas~s~hkYt~D~~~ID~~~Gt~eEf 1039 (1276)
+++ + .+|||++.+|| +|+ |+||+++||
T Consensus 215 ----~~~--~-------~~~GYd~~dy~---------------------~id-------------------~~~Gt~~df 241 (637)
T 1ji1_A 215 ----FKA--P-------TNHKYDTQDYM---------------------AVD-------------------PAFGDNSTL 241 (637)
T ss_dssp ----EEC--S-------SSSCCSCSEEE---------------------EEC-------------------TTTCCHHHH
T ss_pred ----ccC--C-------CCCCcCccchh---------------------hhc-------------------cccCCHHHH
Confidence 433 1 25999999999 565 899999999
Q ss_pred HHHHHHHHHcC--C--EEEEEEeccccCCcccCCCcC--CC------CCC---CcccccC-CCCCCCCCCC----cCCCC
Q psy9003 1040 KYLVDECHKAG--L--YVLLDVVHSHASKNVLDGLNE--FD------GTQ---ACFFHDG-PRGTHPLWDS----RLFNY 1099 (1276)
Q Consensus 1040 K~LV~alHk~G--I--~VILDvV~NHt~~~~~~~~~~--f~------g~~---~~Yy~~~-~~g~~~~W~g----~~LN~ 1099 (1276)
|+||++||++| | +||||+|+||++.+++|+... |. +.. ..||... ..+.+..|.+ ++||+
T Consensus 242 k~LV~~~H~~G~~I~~~VIlD~V~NH~~~~~~~f~~~~~f~~~g~y~~~~~py~~~y~~~~~~~~~~~~~g~~~~pdln~ 321 (637)
T 1ji1_A 242 QTLINDIHSTANGPKGYLILDGVFNHTGDSHPWFDKYNNFSSQGAYESQSSPWYNYYTFYTWPDSYASFLGFNSLPKLNY 321 (637)
T ss_dssp HHHHHHHHCSSSSSCCEEEEEECCSBCCTTSTTTCTTCCSSSCCTTTCTTCTTGGGBCEEETTTEECEETTEEEEEBBBC
T ss_pred HHHHHHHHhCCCCccceEEEEECcccCCCCcHHHhhhhccCccccccCCCCccccccccCCCCCCcccccCCCCcccccc
Confidence 99999999999 9 999999999999988764321 11 222 2345432 2234445543 69999
Q ss_pred CcH--HHHHHH----HHHHHHHHHh-CCCcEEccCCccccccccCCCCCCCCCCCccccCCCCCchHHHHHHHHHHHHHh
Q psy9003 1100 SEI--EVLRFL----LSNLRWYLDE-YQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHD 1172 (1276)
Q Consensus 1100 ~np--~Vr~~I----idsl~~Wv~e-ygVDGFRfD~a~~L~~~d~g~g~~~~~~~~~~~~~~~d~~a~~Fl~el~~~Vr~ 1172 (1276)
++| +||++| +++++||+++ |||||||||++..|.... ++ ....+...||+++++.+++
T Consensus 322 ~~p~~~Vr~~i~~~~~~~~~~Wl~~~~gvDGfR~Da~~~l~~~~----~~-----------~~~~~~~~fl~~~~~~v~~ 386 (637)
T 1ji1_A 322 GNSGSAVRGVIYNNSNSVAKTYLNPPYSVDGWRLDAAQYVDANG----NN-----------GSDVTNHQIWSEFRNAVKG 386 (637)
T ss_dssp CSTTCHHHHHHTTSTTSHHHHHHSTTTCCCEEEETTGGGCBSTT----CC-----------CSSHHHHHHHHHHHHHHHH
T ss_pred cCChHHHHHHHHhhhHHHHHHHHhCcCCCCEEEEEchhhhhccC----cc-----------ccccchHHHHHHHHHHHHh
Confidence 999 999999 9999999999 999999999999984210 00 0123568899999999999
Q ss_pred hCCCeEEEEEccCCCC
Q psy9003 1173 KYPEIITIAEDVSGMP 1188 (1276)
Q Consensus 1173 ~~PdvilIAE~~s~~p 1188 (1276)
.+|++++|||.|...+
T Consensus 387 ~~p~~~ligE~~~~~~ 402 (637)
T 1ji1_A 387 VNSNAAIIGEYWGNAN 402 (637)
T ss_dssp HCTTCEEEECCSSCCG
T ss_pred hCCCeEEEEEecCCch
Confidence 9999999999987653
|
| >1gjw_A Maltodextrin glycosyltransferase; alpha-amylase, maltosyltransferase; HET: MAL GLC; 2.1A {Thermotoga maritima} SCOP: b.71.1.1 c.1.8.1 PDB: 1gju_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-42 Score=418.25 Aligned_cols=294 Identities=17% Similarity=0.167 Sum_probs=207.4
Q ss_pred ccceecCCCeEEEEcCCCCCCCcccCcccEEEEEEEEeCCeeeeecCCcceEeecCCCCCccccc--eeeCCCCCCCCCc
Q psy9003 808 FAYKKLDFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHGHLLDRLSPWATYVTEPPVVGHAYEQ--RIWNPKPQDKHKW 885 (1276)
Q Consensus 808 ~pM~r~~~GVWsl~Ip~~~~G~~~i~hGs~YkYrV~~~dG~~~~~~DPYAkav~~~~~~s~v~~~--~~~~p~~~~~y~W 885 (1276)
.+|++..+|+|+++||+.. +|. |+|+|.+.+|. .++||||+++..++. ++.+. ..|. ++..|
T Consensus 8 ~~l~~~~~g~w~~~i~~~~-------~g~-Y~y~v~~~~g~--~~~DPya~~~~~~~~--~~~~~~~~~~~----~p~~w 71 (637)
T 1gjw_A 8 RYCKEKATGKRIYAVPKLW-------IPG-FFKKFDEKSGR--CFVDPYELGAEITDW--ILNQSREWDYS----QPLSF 71 (637)
T ss_dssp HHHHHHCCCCCCEEECGGG-------SCT-TCCCCEEETTE--EEECHHHHHHHHHHH--HHTTCCSSCTT----SCHHH
T ss_pred HHHhhcCCCeEEEEeCCCC-------CCc-ceEEEECCCCC--EECCccccceecCce--eccCCCccccc----Cchhh
Confidence 3677778899999999764 468 99999988887 489999999876543 11111 0111 12355
Q ss_pred CCCCC--CCCCCceEEEEecCCccccC----------------ccCcHHHHHHhhhhHHHHcCCCCCccceeeccccccc
Q psy9003 886 TSSKP--KKPDNLKIYESHVGICTQEQ----------------KCASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDE 947 (1276)
Q Consensus 886 ~~~rp--~~~~d~vIYElHVr~ft~~~----------------~~Gtf~gl~ek~LdyLK~LGVna~d~wV~LmP~f~~e 947 (1276)
...++ .++++++|||+|||+|+... ..|||+|++++ |||||+||||+ |||||++++
T Consensus 72 ~~~~~~~~~~~~~~iYe~~~~~f~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~-l~~l~~lG~~~----v~l~Pi~~~- 145 (637)
T 1gjw_A 72 LKGEKTPDWIKRSVVYGSLPRTTAAYNHKGSGYYEENDVLGFREAGTFFKMMLL-LPFVKSLGADA----IYLLPVSRM- 145 (637)
T ss_dssp HHTCCSGGGGGGCCEEEECHHHHTCCCTTSSSCCCSBCTTSCBCSCCHHHHHHT-HHHHHHHTCCE----EEECCCEEE-
T ss_pred hhccCccCchhhCeEEEEeeccccCCCCCCCCccccccccchhccccHHHHHHH-HHHHHHcCCCE----EEeCCCeec-
Confidence 43433 25588999999999997421 35999999885 99999999999 999966542
Q ss_pred ccccccceeeccCccccccccccccCCCcccCCCccccccccccccccccCCCCCCcccccccccccCCCCCcccccccc
Q psy9003 948 DWNMGNIVHTLTNRRYMEKTVAYAESHDQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDEC 1027 (1276)
Q Consensus 948 ew~~~~pi~~l~~~Pi~E~~i~~~~S~~~~~WGYdp~nyf~~d~~~y~~~S~~~Dp~~~~dap~~~yas~s~hkYt~D~~ 1027 (1276)
+.......++|||++.+|| +|+++|+++.
T Consensus 146 ---------------------~~~~~~g~~~~gY~~~~~~---------------------~~~~~~g~~~--------- 174 (637)
T 1gjw_A 146 ---------------------SDLFKKGDAPSPYSVKNPM---------------------ELDERYHDPL--------- 174 (637)
T ss_dssp ---------------------CCSSCSSSSCCTTSEEEEE---------------------EECGGGSCGG---------
T ss_pred ---------------------ccccccCCCCCccCCCCcC---------------------CcCcccCCCc---------
Confidence 1110012367999999999 6665666531
Q ss_pred ccCCCCCCHHHHHHHHHHHHHcCCEEEEEEeccccCCcccCCCc------------------------CCCCCCC-----
Q psy9003 1028 HKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLN------------------------EFDGTQA----- 1078 (1276)
Q Consensus 1028 ~ID~~~Gt~eEfK~LV~alHk~GI~VILDvV~NHt~~~~~~~~~------------------------~f~g~~~----- 1078 (1276)
..++++.+|||+||++||++||+||||+|+||++.++.+... +|++..+
T Consensus 175 --~~~~~~~~~~~~lv~~~H~~Gi~VilD~V~nH~~~~~~~~~~~p~~f~~~~~~~~~~y~~p~~~~l~~~~~~~~~~~~ 252 (637)
T 1gjw_A 175 --LEPFKVDEEFKAFVEACHILGIRVILDFIPRTAARDSDLIREHPDWFYWIKVEELADYTPPRAEELPFKVPDEDELEI 252 (637)
T ss_dssp --GTTSCHHHHHHHHHHHHHHTTCEEEEEECTTEEETTCGGGTTCGGGSCCEEGGGSTTCCCCCCTTSCSBCCCHHHHHH
T ss_pred --ccccchHHHHHHHHHHHHHCCCEEEEEECcCCCcCcchhhhhCCceeEecccccccccCCccccccccCCcccccccc
Confidence 145677999999999999999999999999999987643110 0111100
Q ss_pred cc-----------cccC------------------------------CCCC--------CCCCC----------------
Q psy9003 1079 CF-----------FHDG------------------------------PRGT--------HPLWD---------------- 1093 (1276)
Q Consensus 1079 ~Y-----------y~~~------------------------------~~g~--------~~~W~---------------- 1093 (1276)
.| |... .... .+.|+
T Consensus 253 ~Y~~~~~~~~~~~f~~~~~~~~p~~w~~~~~~~g~~~~~~~~~fg~~~~~~~~dw~~~~~~~w~d~~~l~~~~~~p~~~~ 332 (637)
T 1gjw_A 253 IYNKENVKRHLKKFTLPPNLIDPQKWEKIKREEGNILELIVKEFGIITPPGFSDLINDPQPTWDDVTFLRLYLDHPEASK 332 (637)
T ss_dssp HHTSHHHHHHHTTBCCCHHHHCHHHHHHHHTCSSCHHHHHHHHHSEECCCBCCSSBTCCSCCBTTEEECCCBSSCCGGGG
T ss_pred cccChhhhhhhhhcccCccccChhhcccccccccchhhhhhhccccccCcccccccccCCCCcccceeeecccCCchhhh
Confidence 00 1100 0000 12232
Q ss_pred -------------------CcCCCCCcHHHHHHHHHHHHHHHHhCCCcEEccCCccccccccCCCCCCCCCCCccccCCC
Q psy9003 1094 -------------------SRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLN 1154 (1276)
Q Consensus 1094 -------------------g~~LN~~np~Vr~~Iidsl~~Wv~eygVDGFRfD~a~~L~~~d~g~g~~~~~~~~~~~~~~ 1154 (1276)
.+.+|++||+||++|+++++||+++|||||||||+|..|.
T Consensus 333 ~~~~~~~~dy~~f~~~~~~~~~ln~~np~V~~~l~d~~~~W~~e~gvDGfRlD~a~~l~--------------------- 391 (637)
T 1gjw_A 333 RFLDPNQPPYVLYDVIKASKFPGKEPNRELWEYLAGVIPHYQKKYGIDGARLDMGHALP--------------------- 391 (637)
T ss_dssp GGSCTTCCCCCCHHHHCTTTSCCSSBCHHHHHHHTTHHHHHHHHHCCCEEEESSGGGSC---------------------
T ss_pred hccccCCCcceecchhhhcccCcccCCHHHHHHHHHHHHHHhhhcCCceEEecchhhCC---------------------
Confidence 1224899999999999999999999999999999999872
Q ss_pred CCchHHHHHHHHHHHHHhhCCCeEEEEEccCCCCCCccccccCCcccCcccC
Q psy9003 1155 VDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDYRLV 1206 (1276)
Q Consensus 1155 ~d~~a~~Fl~el~~~Vr~~~PdvilIAE~~s~~p~~~~p~~~gglGFD~~~n 1206 (1276)
..||+++++.+++.+|++++|||.|...+.. ++. +.|||+.++
T Consensus 392 -----~~f~~~~~~~v~~~~p~~~ligE~~~~~~~~--~~~--~~gfd~~~~ 434 (637)
T 1gjw_A 392 -----KELLDLIIKNVKEYDPAFVMIAEELDMEKDK--ASK--EAGYDVILG 434 (637)
T ss_dssp -----HHHHHHHHHHHHHHCTTCEEEECCCCGGGHH--HHH--HHTCSEECC
T ss_pred -----HHHHHHHHHHHHHhCCCeEEEEeCCCCcchh--hHh--hcCCceEec
Confidence 3599999999999999999999998753211 222 246876655
|
| >4aee_A Alpha amylase, catalytic region; hydrolase, hyperthermostable, cyclodextrin hydrolase, GH13; 2.28A {Staphylothermus marinus} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-39 Score=397.50 Aligned_cols=252 Identities=15% Similarity=0.171 Sum_probs=185.1
Q ss_pred CCCCceEEEEecCCccccC-------------------ccCcHHHHHHhhhhHHHHcCCCCCccceeecccccccccccc
Q psy9003 892 KPDNLKIYESHVGICTQEQ-------------------KCASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMG 952 (1276)
Q Consensus 892 ~~~d~vIYElHVr~ft~~~-------------------~~Gtf~gl~ek~LdyLK~LGVna~d~wV~LmP~f~~eew~~~ 952 (1276)
+++++||||++|+.|.... ..|+|+|++++ |||||+||||+ |||||+|
T Consensus 222 W~~~~viYqI~p~rF~~~~~~n~~~~~~~w~~~~~~~~~gGdl~Gi~~k-LdyLk~LGvt~----IwL~Pi~-------- 288 (696)
T 4aee_A 222 WYMGTVYYQIFIDSFDNGDPNNDPPNRIKKTVPREYGYYGGDLAGIMKH-IDHLEDLGVET----IYLTPIF-------- 288 (696)
T ss_dssp TTSSCCEEEECGGGTCCCCGGGCCSSCCCCCSSCCSSCCCCCHHHHHTT-HHHHHHHTCCE----EEECCCE--------
T ss_pred hhhcCeEEEEehHHhcCCCCCCCccccccccCCcccccCCcCHHHHHHH-hHHHHHcCCCE----EEECCcc--------
Confidence 4589999999999997432 47999999996 99999999999 9999444
Q ss_pred cceeeccCccccccccccccCCCcccCCCccccccccccccccccCCCCCCcccccccccccCCCCCccccccccccCCC
Q psy9003 953 NIVHTLTNRRYMEKTVAYAESHDQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGL 1032 (1276)
Q Consensus 953 ~pi~~l~~~Pi~E~~i~~~~S~~~~~WGYdp~nyf~~d~~~y~~~S~~~Dp~~~~dap~~~yas~s~hkYt~D~~~ID~~ 1032 (1276)
+. ..+|||++.||+ +++ |+
T Consensus 289 ------------~s---------~~~~GYd~~Dy~---------------------~id-------------------p~ 307 (696)
T 4aee_A 289 ------------SS---------TSYHRYDTIDYK---------------------SID-------------------KY 307 (696)
T ss_dssp ------------EE---------SSSSCCSEEEEE---------------------EEC-------------------GG
T ss_pred ------------cC---------CCCCCcCccccc---------------------ccC-------------------cc
Confidence 32 125999999999 444 89
Q ss_pred CCCHHHHHHHHHHHHHcCCEEEEEEeccccCCcccCCCcCC----CCCCCcccccCC--C--------------------
Q psy9003 1033 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEF----DGTQACFFHDGP--R-------------------- 1086 (1276)
Q Consensus 1033 ~Gt~eEfK~LV~alHk~GI~VILDvV~NHt~~~~~~~~~~f----~g~~~~Yy~~~~--~-------------------- 1086 (1276)
||+.+||++||++||++||+||||+|+|||+.+++|+.... +...+.||.... .
T Consensus 308 ~Gt~~df~~Lv~~aH~~GikVilD~V~NHts~~~~~f~~~~~~~~~s~y~dwy~~~~~~~~~~~~~~~~~~~~~~~~s~~ 387 (696)
T 4aee_A 308 LGTMEDFEKLVQVLHSRKIKIVLDITMHHTNPCNELFVKALREGENSPYWEMFSFLSPPPKEIVELMLKYIDGEECRSRE 387 (696)
T ss_dssp GCCHHHHHHHHHHHHHTTCEEEEEECSSEECTTSHHHHHHHHHCTTSTTGGGBCBCSCCCHHHHHHHHHHHSSSSCCGGG
T ss_pred cCCHHHHHHHHHHHHHCCCEEEEeccccccCccCHHHHHHHhcCCCCCCCCceEecCCCCcccccccccccCCCcccccc
Confidence 99999999999999999999999999999999876532110 111233443211 1
Q ss_pred -----------CCCCCC----CCcCCCCCcHHHHHHHHHHHHHHHHhCCCcEEccCCccccccccCCCCCCCCCCCcccc
Q psy9003 1087 -----------GTHPLW----DSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYF 1151 (1276)
Q Consensus 1087 -----------g~~~~W----~g~~LN~~np~Vr~~Iidsl~~Wv~eygVDGFRfD~a~~L~~~d~g~g~~~~~~~~~~~ 1151 (1276)
+.+..| +.++||++||+||++|+++++||+ ++||||||||++.+|
T Consensus 388 ~~~~~~~~~~~~~y~~~~~~~~~pdLN~~np~Vr~~i~~~~~~Wl-~~GvDGfRlDaa~~i------------------- 447 (696)
T 4aee_A 388 LYKLDYFRNNKPFYEAFFNIWLMAKFNHDNPRTVDYFIDITKFWI-DKGIDGFRIDVAMGI------------------- 447 (696)
T ss_dssp GGGSHHHHHSCCSBCBGGGCTTCEEBCTTCHHHHHHHHHHHHHHH-TTTCCEEEETTGGGS-------------------
T ss_pred ccccccccCCCCceeeecCCCCchhhcCCCHHHHHHHHHHHHHHH-hCCCCEEEEechhhC-------------------
Confidence 111111 237999999999999999999999 899999999999877
Q ss_pred CCCCCchHHHHHHHHHHHHHhhCCCeEEEEEccCCCCCCccccccCCcccCcccC-CCccc---hh------hHHHHHHH
Q psy9003 1152 GLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDYRLV-SLEGS---AL------SALFDAAM 1221 (1276)
Q Consensus 1152 ~~~~d~~a~~Fl~el~~~Vr~~~PdvilIAE~~s~~p~~~~p~~~gglGFD~~~n-~lEes---aL------S~~F~~~L 1221 (1276)
+..||+++++.+++.+|++++|||. .. .++. .+.+||+.|+ .+... .+ ...|...|
T Consensus 448 -------~~~f~~~~~~~v~~~~p~~~~igE~-~~-----~~~l-~~~~~d~~~n~~~~~~~~~~~~~~~~~~~~~~~~l 513 (696)
T 4aee_A 448 -------HYSWMKQYYEYIKNTYPDFLVLGEL-AE-----NPRI-YMDYFDSAMNYYLRKAILELLIYKRIDLNEFISRI 513 (696)
T ss_dssp -------CHHHHHHHHHHHHHHCTTCEEEECC-CS-----CGGG-TTTTCSEEBCHHHHHHHHHHHTSCCSCHHHHHHHH
T ss_pred -------CHHHHHHHHHHHHhhCCCcEEEecc-cc-----hhhh-cCCccceEECcHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 2469999999999999999999997 22 2332 3567887777 32100 00 14566666
Q ss_pred HHHHHHhcccCCC-CCeeEeecCCCeEEEEE
Q psy9003 1222 NTTEERFKWLSAD-PGYVSTKHEGDKVIIFE 1251 (1276)
Q Consensus 1222 n~l~~~~p~L~~~-~~~~l~nHD~~RVlsf~ 1251 (1276)
..+...+|.-... ..+++.|||++|+++..
T Consensus 514 ~~~~~~~~~~~~~~~~nfl~nHD~~R~~s~~ 544 (696)
T 4aee_A 514 NNVYAYIPHYKALSLYNMLGSHDVPRIKSMV 544 (696)
T ss_dssp HHHHTTSCHHHHHHCEECSCCTTSCCHHHHH
T ss_pred HHHHHhcchhhhhheeEecCCCCCCeehhhc
Confidence 6655544421111 12457899999987643
|
| >4aef_A Neopullulanase (alpha-amylase II); hydrolase, thermostability, high temperature; 2.34A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-39 Score=392.62 Aligned_cols=193 Identities=16% Similarity=0.113 Sum_probs=148.2
Q ss_pred CCCCceEEEEecCCccccC------------ccCcHHHHHHhhhhHHHHcCCCCCccceeecccccccccccccceeecc
Q psy9003 892 KPDNLKIYESHVGICTQEQ------------KCASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLT 959 (1276)
Q Consensus 892 ~~~d~vIYElHVr~ft~~~------------~~Gtf~gl~ek~LdyLK~LGVna~d~wV~LmP~f~~eew~~~~pi~~l~ 959 (1276)
+++++||||+||++|.... ..|+|+|++++ |||||+||||+ |||||+|
T Consensus 203 W~~~aViYqI~p~~F~~~~~~~g~~~~~~~~~gGdl~Gi~~k-LdYLk~LGvt~----I~L~Pif--------------- 262 (645)
T 4aef_A 203 WVIDRVFYQIMPDKFARSRKIQGIAYPKDKYWGGDLIGIKEK-IDHLVNLGINA----IYLTPIF--------------- 262 (645)
T ss_dssp GGGGCCEEEECHHHHCCCSSCC---------CCCCHHHHHHT-HHHHHHHTCCE----EEECCCE---------------
T ss_pred hHcCCEEEEEecchhcCCCCCCcccCCcCcCCCcCHHHHHHh-hHHHHHcCCCE----EEECCCC---------------
Confidence 5689999999999997421 23999999997 99999999999 9999544
Q ss_pred CccccccccccccCCCcccCCCccccccccccccccccCCCCCCcccccccccccCCCCCccccccccccCCCCCCHHHH
Q psy9003 960 NRRYMEKTVAYAESHDQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQL 1039 (1276)
Q Consensus 960 ~~Pi~E~~i~~~~S~~~~~WGYdp~nyf~~d~~~y~~~S~~~Dp~~~~dap~~~yas~s~hkYt~D~~~ID~~~Gt~eEf 1039 (1276)
+. ..+|||++.||| +++ |+||+++||
T Consensus 263 -----~s---------~~~~GYd~~dy~---------------------~id-------------------p~~Gt~~df 288 (645)
T 4aef_A 263 -----SS---------LTYHGYDIVDYF---------------------HVA-------------------RRLGGDRAF 288 (645)
T ss_dssp -----EE---------SSTTCSSEEEEE---------------------EEC-------------------GGGTCHHHH
T ss_pred -----CC---------CCCCCcCccCCC---------------------ccC-------------------cccCCHHHH
Confidence 22 246999999999 555 899999999
Q ss_pred HHHHHHHHHcCCEEEEEEeccccCCcccCCCcC---CC-CCCCcccccCC-CC---------------------------
Q psy9003 1040 KYLVDECHKAGLYVLLDVVHSHASKNVLDGLNE---FD-GTQACFFHDGP-RG--------------------------- 1087 (1276)
Q Consensus 1040 K~LV~alHk~GI~VILDvV~NHt~~~~~~~~~~---f~-g~~~~Yy~~~~-~g--------------------------- 1087 (1276)
|+||++||++||+||||+|+|||+..++|+... .. .....||.... ..
T Consensus 289 ~~LV~~aH~~GI~VIlD~V~NHts~~h~wf~~~~~~~~~s~~~d~y~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~ 368 (645)
T 4aef_A 289 VDLLSELKRFDIKVILDGVFHHTSFFHPYFQDVVRKGENSSFKNFYRIIKFPVVSKEFLQILHSKSSWEEKYKKIKSLGW 368 (645)
T ss_dssp HHHHHHHHHTTCEEEEEECCSBCCTTSHHHHHHHHHSTTCTTGGGBCBSSSSCSCTTHHHHHHHSCGGGTTHHHHHHHCC
T ss_pred HHHHHHhhhcCCEEEEEecccccccCCchhhhHhhcCCCCCcccccEeccCCCcccccccccCCCccccccccccccccc
Confidence 999999999999999999999999988764311 01 11123332211 00
Q ss_pred CCCCC----CCcCCCCCcHHHHHHHHHHHHHHHHhCCCcEEccCCccccccccCCCCCCCCCCCccccCCCCCchHHHHH
Q psy9003 1088 THPLW----DSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYL 1163 (1276)
Q Consensus 1088 ~~~~W----~g~~LN~~np~Vr~~Iidsl~~Wv~eygVDGFRfD~a~~L~~~d~g~g~~~~~~~~~~~~~~~d~~a~~Fl 1163 (1276)
.+..| .-++||++||+||++|++++++|++ +||||||+|++..+. .+||
T Consensus 369 ~y~~~~~~~~~pdLn~~np~V~~~~~~~~~~Wl~-~gvDGfR~D~a~~i~--------------------------~~f~ 421 (645)
T 4aef_A 369 NYESFFSVWIMPRLNHDNPKVREFIKNVILFWTN-KGVDGFRMDVAHGVP--------------------------PEVW 421 (645)
T ss_dssp SBCEETTEEEEEBBCTTSHHHHHHHHHHHHHHHH-TTCCEEEETTGGGSC--------------------------HHHH
T ss_pred ccccccccccCccccccCHHHHHHHHHHHHHHHh-cCCCEEEeccccccc--------------------------hhHH
Confidence 00001 1268999999999999999999998 599999999998772 3588
Q ss_pred HHHHHHHHhhCCCeEEEEEccCCCC
Q psy9003 1164 MVANKFLHDKYPEIITIAEDVSGMP 1188 (1276)
Q Consensus 1164 ~el~~~Vr~~~PdvilIAE~~s~~p 1188 (1276)
+.+++.+ .++..++||.|....
T Consensus 422 ~~~~~~~---~~~~~~~gE~~~~~~ 443 (645)
T 4aef_A 422 KEVREAL---PKEKYLIGEVMDDAR 443 (645)
T ss_dssp HHHHHHS---CTTCEEEECCCSCCG
T ss_pred HHHHhhh---hccccccccccccch
Confidence 8887644 567889999876543
|
| >4aie_A Glucan 1,6-alpha-glucosidase; hydrolase, glycoside hydrolase 13; HET: MES GOL; 2.05A {Lactobacillus acidophilus ncfm} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-36 Score=358.21 Aligned_cols=273 Identities=14% Similarity=0.157 Sum_probs=186.8
Q ss_pred CCCCCceEEEEecCCccc--cCccCcHHHHHHhhhhHHHHcCCCCCccceeecccccccccccccceeeccCcccccccc
Q psy9003 891 KKPDNLKIYESHVGICTQ--EQKCASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTV 968 (1276)
Q Consensus 891 ~~~~d~vIYElHVr~ft~--~~~~Gtf~gl~ek~LdyLK~LGVna~d~wV~LmP~f~~eew~~~~pi~~l~~~Pi~E~~i 968 (1276)
.+|+++||||+|||+|++ ....|||+|++++ |||||+||||+ |||||+|+ .
T Consensus 5 ~Ww~~~viYei~~~~F~d~~~dg~Gdl~Gi~~k-LdYLk~LGvt~----I~L~Pi~~--------------------~-- 57 (549)
T 4aie_A 5 SWWKNAVVYQVYPKSFQDSNGDGIGDLQGIISR-LDYLEKLGIDA----IWLSPVYQ--------------------S-- 57 (549)
T ss_dssp CGGGSCCEEEECGGGTCCSSSSSSCCHHHHHTT-HHHHHHHTCSE----EEECCCEE--------------------C--
T ss_pred hhhccCeEEEEEcchhcCCCCCCCcCHHHHHHh-hHHHHHCCCCE----EEeCCCcC--------------------C--
Confidence 356899999999999985 4567999999996 99999999999 99995443 2
Q ss_pred ccccCCCcccCCCccccccccccccccccCCCCCCcccccccccccCCCCCccccccccccCCCCCCHHHHHHHHHHHHH
Q psy9003 969 AYAESHDQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHK 1048 (1276)
Q Consensus 969 ~~~~S~~~~~WGYdp~nyf~~d~~~y~~~S~~~Dp~~~~dap~~~yas~s~hkYt~D~~~ID~~~Gt~eEfK~LV~alHk 1048 (1276)
+..+|||++.||| +++ |+||+++|||+||++||+
T Consensus 58 ------~~~~~GYd~~dy~---------------------~vd-------------------p~~Gt~~dfk~Lv~~aH~ 91 (549)
T 4aie_A 58 ------PGVDNGYDISDYE---------------------AID-------------------PQYGTMADMDELISKAKE 91 (549)
T ss_dssp ------CCTTTTSSCSEEE---------------------EEC-------------------TTTCCHHHHHHHHHHHHH
T ss_pred ------CCCCCCcCccCCC---------------------CcC-------------------cccCCHHHHHHHHHHHHH
Confidence 1246999999999 555 999999999999999999
Q ss_pred cCCEEEEEEeccccCCcccCCCcCCCCCC---Cccc-ccCC-CCC-CC----------------------C---CCCcCC
Q psy9003 1049 AGLYVLLDVVHSHASKNVLDGLNEFDGTQ---ACFF-HDGP-RGT-HP----------------------L---WDSRLF 1097 (1276)
Q Consensus 1049 ~GI~VILDvV~NHt~~~~~~~~~~f~g~~---~~Yy-~~~~-~g~-~~----------------------~---W~g~~L 1097 (1276)
+||+||||+|+|||+.+++|+.....+.. ..|| ..++ .+. .. . ...++|
T Consensus 92 ~Gi~VilD~V~NHts~~~~wf~~~~~~~~~~~~~~y~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~dl 171 (549)
T 4aie_A 92 HHIKIVMDLVVNHTSDQHKWFVEAKKGKDNQYRDYYIWRDPVDEHEPNDLKSAFSGSAWKYDERSGQYYLHFFADQQPDL 171 (549)
T ss_dssp TTCEEEEEECCSBCCTTSHHHHHHTTCTTSTTGGGBCEECCBTTBCSSCCBCTTSSBSEEEETTTTEEEECSSCTTSCBB
T ss_pred CCCEEEEEECccCCcCCcchhhhhhhcccccccccccccCCcccCCCCCcccccCCCcccccccCCceEecccCCCCCcc
Confidence 99999999999999999876532222211 1111 1111 000 00 0 124799
Q ss_pred CCCcHHHHHHHHHHHHHHHHhCCCcEEccCCccccccccCCCCCCCCCCCccccCCCCCchHHHHHHHHHHHHHhhCCCe
Q psy9003 1098 NYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEI 1177 (1276)
Q Consensus 1098 N~~np~Vr~~Iidsl~~Wv~eygVDGFRfD~a~~L~~~d~g~g~~~~~~~~~~~~~~~d~~a~~Fl~el~~~Vr~~~Pdv 1177 (1276)
|++||+|+++|+++++||++ +||||||||++..+... . +..+. ........+++.+++.+ ...|++
T Consensus 172 n~~np~v~~~i~~~~~~W~e-~gvDGfRlD~~~~l~~~-~--~~~~~---------~~~~~~~~~~~~~~~~~-~~~~~~ 237 (549)
T 4aie_A 172 NWQNTELRQKIYNMMNFWLD-KGIGGFRMDVIELIGKD-P--DKNIR---------ENGPMLHPYLQEMNKAT-FGKRDV 237 (549)
T ss_dssp CTTCHHHHHHHHHHHHHHHH-TTCCEEEETTGGGTTCB-G--GGTBC---------TTCTTHHHHHHHHHHHT-TTTTCC
T ss_pred ccCCHHHHHHHHHHHHHHHH-hcCCceeEecHHhcccc-c--hhhhc---------ccccccchHHHhhhhcc-ccccce
Confidence 99999999999999999976 79999999999988422 0 00000 01122345666666554 457899
Q ss_pred EEEEEccCCCCCCccccccC-CcccCcccC----CCc-----cc----hh-hHHHHHHHHHHHHHhcccCCCCCeeEeec
Q psy9003 1178 ITIAEDVSGMPASCRPVTEG-GTGFDYRLV----SLE-----GS----AL-SALFDAAMNTTEERFKWLSADPGYVSTKH 1242 (1276)
Q Consensus 1178 ilIAE~~s~~p~~~~p~~~g-glGFD~~~n----~lE-----es----aL-S~~F~~~Ln~l~~~~p~L~~~~~~~l~nH 1242 (1276)
++|||.|...+.....+..+ +..+++.++ .+. .. .. ...+...+.......+.-..+..+++.||
T Consensus 238 ~~vgE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~nH 317 (549)
T 4aie_A 238 MTVGETWNATPKIAEEYSDPDRHELSMVFQFENQSLDQQPGKEKWDLKPLDLGELKKVLVKWQTKIDFDHAWNSLFWENH 317 (549)
T ss_dssp EEEEECTTCCHHHHHHHHCGGGCSCSEEECCGGGGGGBCTTSCTTSBCCCCHHHHHHHHHHHHHSSCTTSCCCEECSCCT
T ss_pred eeeecccCCCHHHHHHhcCCccccccccccccccccccccccccccccccchHHHHHHHHHhhhhccccccccceeeccC
Confidence 99999998877766554422 111222211 110 00 00 14455555555555544334455678899
Q ss_pred CCCeEEEE
Q psy9003 1243 EGDKVIIF 1250 (1276)
Q Consensus 1243 D~~RVlsf 1250 (1276)
|++|+++.
T Consensus 318 D~~r~~s~ 325 (549)
T 4aie_A 318 DIPRVISR 325 (549)
T ss_dssp TSCCHHHH
T ss_pred Cchhhhhh
Confidence 99998763
|
| >1wza_A Alpha-amylase A; hydrolase, halophilic, thermophilic; 1.60A {Halothermothrix orenii} SCOP: b.71.1.1 c.1.8.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-36 Score=357.29 Aligned_cols=261 Identities=16% Similarity=0.234 Sum_probs=190.1
Q ss_pred CCceEEEEecCCccc--cCccCcHHHHHHhhhhHH--------HHcCCCCCccceeecccccccccccccceeeccCccc
Q psy9003 894 DNLKIYESHVGICTQ--EQKCASYEDFVRVVIPRI--------VKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRY 963 (1276)
Q Consensus 894 ~d~vIYElHVr~ft~--~~~~Gtf~gl~ek~LdyL--------K~LGVna~d~wV~LmP~f~~eew~~~~pi~~l~~~Pi 963 (1276)
+++||||+|||+|++ ..+.|+|+|++++ |||| |+||||+ |||||+|
T Consensus 3 ~~~viYqi~~~~F~~~~~~g~Gdl~gi~~~-LdyL~~~~~~~~~~LGv~~----I~L~Pi~------------------- 58 (488)
T 1wza_A 3 KHGTYYEIFVRSFYDSDGDGIGDLKGIIEK-LDYLNDGDPETIADLGVNG----IWLMPIF------------------- 58 (488)
T ss_dssp CCCCEEEECGGGSCCSSSSSCCCHHHHHHT-HHHHCCSCTTCCSSCCCSE----EEECCCE-------------------
T ss_pred CCcEEEEEEChhhcCCCCCCcCCHHHHHHh-hhhhhccccchhhhcCccE----EEECCcc-------------------
Confidence 578999999999985 3567999999996 9999 9999999 9999544
Q ss_pred cccccccccCCCcccCCCccccccccccccccccCCCCCCcccccccccccCCCCCccccccccccCCCCCCHHHHHHHH
Q psy9003 964 MEKTVAYAESHDQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLV 1043 (1276)
Q Consensus 964 ~E~~i~~~~S~~~~~WGYdp~nyf~~d~~~y~~~S~~~Dp~~~~dap~~~yas~s~hkYt~D~~~ID~~~Gt~eEfK~LV 1043 (1276)
+. ..+|||++.||+ +++ |+||+++|||+||
T Consensus 59 -~~---------~~~~GYd~~dy~---------------------~id-------------------p~~Gt~~d~~~Lv 88 (488)
T 1wza_A 59 -KS---------PSYHGYDVTDYY---------------------KIN-------------------PDYGTLEDFHKLV 88 (488)
T ss_dssp -EC---------SSSSCCSCSEEE---------------------EEC-------------------GGGCCHHHHHHHH
T ss_pred -cC---------CCCCCcCccccc---------------------ccC-------------------cccCCHHHHHHHH
Confidence 22 124999999999 444 8899999999999
Q ss_pred HHHHHcCCEEEEEEeccccCCcccCCCcCCCCCC---CcccccCC-CCC--------CCCC-------------C-CcCC
Q psy9003 1044 DECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQ---ACFFHDGP-RGT--------HPLW-------------D-SRLF 1097 (1276)
Q Consensus 1044 ~alHk~GI~VILDvV~NHt~~~~~~~~~~f~g~~---~~Yy~~~~-~g~--------~~~W-------------~-g~~L 1097 (1276)
++||++||+||||+|+|||+.+++|+.....+.. +.||...+ ... ...| . .++|
T Consensus 89 ~~aH~~Gi~VilD~V~NH~s~~~~~f~~~~~~~~~~y~d~y~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~f~~~~pdl 168 (488)
T 1wza_A 89 EAAHQRGIKVIIDLPINHTSERHPWFLKASRDKNSEYRDYYVWAGPDTDTKETKLDGGRVWHYSPTGMYYGYFWSGMPDL 168 (488)
T ss_dssp HHHHHTTCEEEEECCCSBCCTTSHHHHHHHTCTTCTTGGGBCBCCSCCCCCBCSSSCBCSEEEETTEEEECSSCTTSCBB
T ss_pred HHHHHCCCEEEEEeccccccCccHhhhhhhcCCCCCCcCeeecCCCCCCCCCccccCCCcccccCCceEEeccCCCCccc
Confidence 9999999999999999999998876532222221 24443321 110 0112 2 3799
Q ss_pred CCCcHHHHHHHHHHHHHHHHhCCCcEEccCCccccccccCCCCCCCCCCCccccCCCCCchHHHHHHHHHHHHHhhCCCe
Q psy9003 1098 NYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEI 1177 (1276)
Q Consensus 1098 N~~np~Vr~~Iidsl~~Wv~eygVDGFRfD~a~~L~~~d~g~g~~~~~~~~~~~~~~~d~~a~~Fl~el~~~Vr~~~Pdv 1177 (1276)
|++||+||++|+++++||+++ ||||||||++.+|... ......+.||+++++.+++.+| +
T Consensus 169 n~~np~Vr~~i~~~~~~Wl~~-gvDGfR~Da~~~i~~~------------------~~~~~~~~~~~~~~~~~~~~~p-~ 228 (488)
T 1wza_A 169 NYNNPEVQEKVIGIAKYWLKQ-GVDGFRLDGAMHIFPP------------------AQYDKNFTWWEKFRQEIEEVKP-V 228 (488)
T ss_dssp CTTSHHHHHHHHHHHHHHHHT-TCCEEEEECCCTTSCG------------------GGTTHHHHHHHHHHHHHTTTSC-C
T ss_pred ccCCHHHHHHHHHHHHHHHHc-CCCChhHhhHhhhccc------------------cCcchHHHHHHHHHHHHhhcCC-C
Confidence 999999999999999999998 9999999999988311 0123567899999999999999 9
Q ss_pred EEEEEccCCCCCCccccccCCcccCcccC-CCccc---hh----hHHHHHHHHHHHHHhccc----CCCCCeeEeecCCC
Q psy9003 1178 ITIAEDVSGMPASCRPVTEGGTGFDYRLV-SLEGS---AL----SALFDAAMNTTEERFKWL----SADPGYVSTKHEGD 1245 (1276)
Q Consensus 1178 ilIAE~~s~~p~~~~p~~~gglGFD~~~n-~lEes---aL----S~~F~~~Ln~l~~~~p~L----~~~~~~~l~nHD~~ 1245 (1276)
++|||.|.. +....++.. .|||+.|+ .+... ++ ...|.+.|..+...++.. .....+++.|||++
T Consensus 229 ~~vgE~~~~-~~~~~~~~~--~~~~~~~~f~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~fl~nHD~~ 305 (488)
T 1wza_A 229 YLVGEVWDI-SETVAPYFK--YGFDSTFNFKLAEAVIATAKAGFPFGFNKKAKHIYGVYDREVGFGNYIDAPFLTNHDQN 305 (488)
T ss_dssp EEEEECCSC-HHHHGGGGT--TTCSEEBCHHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHTCTTSCCCBCBSCCTTSC
T ss_pred EEEEEeCCC-HHHHHHHHh--cCCCEEECHHHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccccccceeeeeccCCCcc
Confidence 999999973 443444432 24666666 22110 11 035666666666555421 12234677899999
Q ss_pred eEEEEE
Q psy9003 1246 KVIIFE 1251 (1276)
Q Consensus 1246 RVlsf~ 1251 (1276)
|+.+..
T Consensus 306 R~~~~~ 311 (488)
T 1wza_A 306 RILDQL 311 (488)
T ss_dssp CHHHHT
T ss_pred hhhhhh
Confidence 987643
|
| >2wc7_A Alpha amylase, catalytic region; CD/PUL-hydrolyzing enzymes, hydrolase, glycosidase, neopullu; 2.37A {Nostoc punctiforme} PDB: 2wcs_A 2wkg_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-36 Score=360.61 Aligned_cols=255 Identities=18% Similarity=0.236 Sum_probs=184.2
Q ss_pred CCCCceEEEEecCCc-ccc-------C----------------ccCcHHHHHHhhhhHHHHcCCCCCccceeeccccccc
Q psy9003 892 KPDNLKIYESHVGIC-TQE-------Q----------------KCASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDE 947 (1276)
Q Consensus 892 ~~~d~vIYElHVr~f-t~~-------~----------------~~Gtf~gl~ek~LdyLK~LGVna~d~wV~LmP~f~~e 947 (1276)
+++++||||++||+| +.. + ..|+|+|++++ |||||+||||+ |||||+|
T Consensus 8 W~~~~viYqi~~~~F~~~gd~~~d~~~~~~~~~w~~~~~~~~~~~Gdl~gi~~~-LdyL~~LGv~~----I~L~Pi~--- 79 (488)
T 2wc7_A 8 WVKHAVFYQIFPDRFARSKQPRKRLLQEARWEDWDSMPTLQGYKGGDLWGIMED-LDYIQNLGINA----IYFTPIF--- 79 (488)
T ss_dssp HHHTCCEEEECGGGTCCCSSCCCCSCTTCCGGGGGGCHHHHC-CCCCHHHHHHT-HHHHHHHTCCE----EEESCCE---
T ss_pred ccccceEEEEccccccCCCCccCCcccccccccccCCCccCccCCcCHHHHHHh-hHHHHHcCCCE----EEECCCC---
Confidence 457899999999999 421 1 27999999986 99999999999 9999544
Q ss_pred ccccccceeeccCccccccccccccCCCcccCCCccccccccccccccccCCCCCCcccccccccccCCCCCcccccccc
Q psy9003 948 DWNMGNIVHTLTNRRYMEKTVAYAESHDQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDEC 1027 (1276)
Q Consensus 948 ew~~~~pi~~l~~~Pi~E~~i~~~~S~~~~~WGYdp~nyf~~d~~~y~~~S~~~Dp~~~~dap~~~yas~s~hkYt~D~~ 1027 (1276)
+. ..+|||++.||| +++
T Consensus 80 -----------------~~---------~~~~GYd~~dy~---------------------~id---------------- 96 (488)
T 2wc7_A 80 -----------------QS---------ASNHRYHTHDYY---------------------QVD---------------- 96 (488)
T ss_dssp -----------------EE---------CTTCTTSEEEEE---------------------EEC----------------
T ss_pred -----------------CC---------CCCCCCCCcCcc---------------------ccC----------------
Confidence 32 125999999999 444
Q ss_pred ccCCCCCCHHHHHHHHHHHHHcCCEEEEEEeccccCCcccCCCcCC----CCCCCccccc-C-CC--------CCCCCCC
Q psy9003 1028 HKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEF----DGTQACFFHD-G-PR--------GTHPLWD 1093 (1276)
Q Consensus 1028 ~ID~~~Gt~eEfK~LV~alHk~GI~VILDvV~NHt~~~~~~~~~~f----~g~~~~Yy~~-~-~~--------g~~~~W~ 1093 (1276)
|+||+.+|||+||++||++||+||||+|+|||+.+++|+.... ....+.||.. + +. ..+..|.
T Consensus 97 ---p~~Gt~~df~~Lv~~aH~~Gi~VilD~V~NH~s~~~~~f~~~~~~~~~s~y~~~y~~~~~~~~~~~~~~~~~~~~~~ 173 (488)
T 2wc7_A 97 ---PMLGGNEAFKELLDAAHQRNIKVVLDGVFNHSSRGFFFFHDVLENGPHSPWVNWFKIEGWPLSPYNGEFPANYVGWA 173 (488)
T ss_dssp ---GGGTHHHHHHHHHHHHHHTTCEEEEEECCSBCCSSSHHHHHHHHHGGGCTTGGGBCBCSSSCCSSCTTSCCCBCBGG
T ss_pred ---cccCCHHHHHHHHHHHHHCCCEEEEEeCCCcCCCcCHHHHHHHhcCCCCCCCCceeecCCCCCCCCCCCCCCccccC
Confidence 8899999999999999999999999999999999886542111 1112344432 2 11 1222332
Q ss_pred ----CcCCCCCcHHHHHHHHHHHHHHHHhCCCcEEccCCccccccccCCCCCCCCCCCccccCCCCCchHHHHHHHHHHH
Q psy9003 1094 ----SRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKF 1169 (1276)
Q Consensus 1094 ----g~~LN~~np~Vr~~Iidsl~~Wv~eygVDGFRfD~a~~L~~~d~g~g~~~~~~~~~~~~~~~d~~a~~Fl~el~~~ 1169 (1276)
.++||++||+||++|+++++||+ ++||||||||++.++.. ..||+++++.
T Consensus 174 ~~~~~pdln~~np~vr~~i~~~~~~Wl-~~gvDGfR~D~~~~i~~-------------------------~~~~~~~~~~ 227 (488)
T 2wc7_A 174 GNRALPEFNHDNPEVREYIMEIAEYWL-KFGIDGWRLDVPFEIKT-------------------------PGFWQEFRDR 227 (488)
T ss_dssp GCTTSBBBCTTSHHHHHHHHHHHHHHH-HHTCCEEEESSGGGCCC-------------------------TTHHHHHHHH
T ss_pred CCCCcCeeccCCHHHHHHHHHHHHHHH-HCCCCEEEEecccccCh-------------------------HHHHHHHHHH
Confidence 27899999999999999999999 79999999999988720 0289999999
Q ss_pred HHhhCCCeEEEEEccCCCCCCccccccCCcccCcccC-CCc--------cch----------------hh-HHHHHHHHH
Q psy9003 1170 LHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDYRLV-SLE--------GSA----------------LS-ALFDAAMNT 1223 (1276)
Q Consensus 1170 Vr~~~PdvilIAE~~s~~p~~~~p~~~gglGFD~~~n-~lE--------esa----------------LS-~~F~~~Ln~ 1223 (1276)
+++.+|++++|||.|..... +. .+.+||..|+ .+. ... ++ ..|.+.+..
T Consensus 228 ~~~~~p~~~~vgE~~~~~~~----~~-~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (488)
T 2wc7_A 228 TKAINPEAYIVGEVWGDSRQ----WL-DGTQFDGVMNYLFAGPTIAFAAGDRVVLEQVQSRDYQPYPPLFAAEYATKIQE 302 (488)
T ss_dssp HHHHCTTCEEEECCCSCCGG----GC-SSSSCSEEEEHHHHHHHHHHHTGGGCCGGGCCTTTCCCCSCCCHHHHHHHHHH
T ss_pred HHhhCCCeEEEEEecCCcHH----hh-cCCCcCceeCchHHHHHHHHHhcCccccccccccccccccCCCHHHHHHHHHH
Confidence 99999999999999865322 22 2456776655 221 000 01 456666666
Q ss_pred HHHHhcccCCC-CCeeEeecCCCeEEEEE
Q psy9003 1224 TEERFKWLSAD-PGYVSTKHEGDKVIIFE 1251 (1276)
Q Consensus 1224 l~~~~p~L~~~-~~~~l~nHD~~RVlsf~ 1251 (1276)
+...+|.-... ..+++.|||++|+++..
T Consensus 303 ~~~~~~~~~~~~~~~f~~nHD~~R~~~~~ 331 (488)
T 2wc7_A 303 VLQLYPWEIQLTQLNLLASHDTARLMTIA 331 (488)
T ss_dssp HHTSSCHHHHTTCEECSCCTTSCCHHHHT
T ss_pred HHHhccchhhcceeEeccccchhhHHHhc
Confidence 55555421111 22467899999987643
|
| >1zja_A Trehalulose synthase; sucrose isomerase, alpha-amylase family, (beta/alpha)8 barrel; 1.60A {Pseudomonas mesoacidophila} PDB: 1zjb_A 2pwd_A* 2pwh_A 2pwg_A 2pwe_A* 2pwf_A* 3gbe_A* 3gbd_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-36 Score=359.80 Aligned_cols=276 Identities=14% Similarity=0.153 Sum_probs=194.3
Q ss_pred CCCCceEEEEecCCccc--cCccCcHHHHHHhhhhHHHHcCCCCCccceeecccccccccccccceeeccCccccccccc
Q psy9003 892 KPDNLKIYESHVGICTQ--EQKCASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVA 969 (1276)
Q Consensus 892 ~~~d~vIYElHVr~ft~--~~~~Gtf~gl~ek~LdyLK~LGVna~d~wV~LmP~f~~eew~~~~pi~~l~~~Pi~E~~i~ 969 (1276)
++++++|||+|||+|++ ....|+|+|++++ |||||+||||+ |||||+| +.
T Consensus 6 w~~~~viYqi~~~~F~~~~~dg~Gdl~gi~~~-Ldyl~~LGv~~----I~L~Pi~--------------------~~--- 57 (557)
T 1zja_A 6 WWKSAVFYQVYPRSFKDTNGDGIGDFKGLTEK-LDYLKGLGIDA----IWINPHY--------------------AS--- 57 (557)
T ss_dssp HHHHCCEEEECGGGTCCSSSSSSCCHHHHHHT-HHHHHHHTCCE----EEECCCE--------------------EC---
T ss_pred hhhcCcEEEEEchHhcCCCCCCccCHHHHHHH-HHHHHHcCCCE----EEECCCc--------------------cC---
Confidence 45789999999999985 4567999999996 99999999999 9999544 32
Q ss_pred cccCCCcccCCCccccccccccccccccCCCCCCcccccccccccCCCCCccccccccccCCCCCCHHHHHHHHHHHHHc
Q psy9003 970 YAESHDQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKA 1049 (1276)
Q Consensus 970 ~~~S~~~~~WGYdp~nyf~~d~~~y~~~S~~~Dp~~~~dap~~~yas~s~hkYt~D~~~ID~~~Gt~eEfK~LV~alHk~ 1049 (1276)
+..+|||++.||+ +++ |+||+++||++||++||++
T Consensus 58 -----~~~~~GYd~~dy~---------------------~id-------------------p~~Gt~~df~~Lv~~aH~~ 92 (557)
T 1zja_A 58 -----PNTDNGYDISDYR---------------------EVM-------------------KEYGTMEDFDRLMAELKKR 92 (557)
T ss_dssp -----CCTTTTSSCSEEE---------------------EEC-------------------TTTCCHHHHHHHHHHHHHT
T ss_pred -----CCCCCCCCccccc---------------------ccC-------------------cccCCHHHHHHHHHHHHHC
Confidence 1235999999999 454 8999999999999999999
Q ss_pred CCEEEEEEeccccCCcccCCCcCCCC-CC--Cccccc-CC-CCCC-CCC-------------------------CCcCCC
Q psy9003 1050 GLYVLLDVVHSHASKNVLDGLNEFDG-TQ--ACFFHD-GP-RGTH-PLW-------------------------DSRLFN 1098 (1276)
Q Consensus 1050 GI~VILDvV~NHt~~~~~~~~~~f~g-~~--~~Yy~~-~~-~g~~-~~W-------------------------~g~~LN 1098 (1276)
||+||||+|+|||+.+++|+.....+ .. ..||.. ++ +|.. .+| ..++||
T Consensus 93 Gi~VilD~V~NHts~~~~wf~~~~~~~~~~y~d~y~~~~~~~g~~p~~~~~~f~~~~w~~~~~~~~~y~~~f~~~~pdLN 172 (557)
T 1zja_A 93 GMRLMVDVVINHSSDQHEWFKSSRASKDNPYRDYYFWRDGKDGHEPNNYPSFFGGSAWEKDPVTGQYYLHYFGRQQPDLN 172 (557)
T ss_dssp TCEEEEEECCSBCCTTSHHHHHHTTCTTCTTGGGBCEECCBTTBCSSCCBCTTSSBSEEEETTTTEEEECSSCTTSCBBC
T ss_pred CCEEEEEEeccccccchhHHHHhhcCCCCCCccceEecCCcCCCCCccccccCCCccccccCCcCcEEEecccccCCccC
Confidence 99999999999999988765322211 11 234432 21 2211 112 137899
Q ss_pred CCcHHHHHHHHHHHHHHHHhCCCcEEccCCccccccccCCCCCCCCCCCc------cccCCCCCchHHHHHHHHHHHHHh
Q psy9003 1099 YSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYD------EYFGLNVDTDALIYLMVANKFLHD 1172 (1276)
Q Consensus 1099 ~~np~Vr~~Iidsl~~Wv~eygVDGFRfD~a~~L~~~d~g~g~~~~~~~~------~~~~~~~d~~a~~Fl~el~~~Vr~ 1172 (1276)
++||+||++|+++++||++ +||||||||++.+|... .+ |...+. ..+ ....++...||+++++.+++
T Consensus 173 ~~np~Vr~~l~~~~~~Wl~-~gvDGfRlDa~~~i~~~-~~----~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~v~~ 245 (557)
T 1zja_A 173 WDTPKLREELYAMLRFWLD-KGVSGMRFDTVATYSKT-PG----FPDLTPEQMKNFAEA-YTQGPNLHRYLQEMHEKVFD 245 (557)
T ss_dssp TTCHHHHHHHHHHHHHHHT-TTCCEEEETTGGGSSCC-TT----CCCCCHHHHHTHHHH-TTCCTTHHHHHHHHHHHTGG
T ss_pred CCCHHHHHHHHHHHHHHHH-cCCCEEeecchhhcccc-cc----cCcCCCccccccccc-ccCChHHHHHHHHHHHHHhc
Confidence 9999999999999999996 89999999999999532 11 110000 000 00113456899999998877
Q ss_pred hCCCeEEEEEccCCCCCCccccc-cCCcccCcccCC-C---c--c-----chh-hHHHHHHHHHHHHHhcccCCCCCeeE
Q psy9003 1173 KYPEIITIAEDVSGMPASCRPVT-EGGTGFDYRLVS-L---E--G-----SAL-SALFDAAMNTTEERFKWLSADPGYVS 1239 (1276)
Q Consensus 1173 ~~PdvilIAE~~s~~p~~~~p~~-~gglGFD~~~n~-l---E--e-----saL-S~~F~~~Ln~l~~~~p~L~~~~~~~l 1239 (1276)
. +++++|||.|+..+.....+. .++.+||+.|++ . . . ... ...+.+.+.++...++. .++..+++
T Consensus 246 ~-~~~~~igE~~~~~~~~~~~y~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~-~~~~~~fl 323 (557)
T 1zja_A 246 H-YDAVTAGEIFGAPLNQVPLFIDSRRKELDMAFTFDLIRYDRALDRWHTIPRTLADFRQTIDKVDAIAGE-YGWNTFFL 323 (557)
T ss_dssp G-SCCEEEEECCSCCGGGHHHHHCGGGCSCSEEECCTTTTTTBCTTSSCBCCCCHHHHHHHHHHHHHHHTT-TCCBEECS
T ss_pred c-CCeEEEEeccCCCHHHHHHHhccCCCcccEEEehhhhhhcccccccccCCCCHHHHHHHHHHHHHhccc-CCccceec
Confidence 5 599999999965554333333 234677766651 1 0 0 011 15677777777666552 23445678
Q ss_pred eecCCCeEEE
Q psy9003 1240 TKHEGDKVII 1249 (1276)
Q Consensus 1240 ~nHD~~RVls 1249 (1276)
.|||++|+++
T Consensus 324 ~nHD~~R~~~ 333 (557)
T 1zja_A 324 GNHDNPRAVS 333 (557)
T ss_dssp CCTTSCCHHH
T ss_pred cCCCCcchhh
Confidence 8999999875
|
| >2zic_A Dextran glucosidase; TIM barrel, (beta/alpha)8-barrel, hydrolase; 2.20A {Streptococcus mutans} PDB: 2zid_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-36 Score=359.65 Aligned_cols=273 Identities=12% Similarity=0.171 Sum_probs=195.4
Q ss_pred CCCCCCceEEEEecCCccc--cCccCcHHHHHHhhhhHHHHcCCCCCccceeecccccccccccccceeeccCccccccc
Q psy9003 890 PKKPDNLKIYESHVGICTQ--EQKCASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKT 967 (1276)
Q Consensus 890 p~~~~d~vIYElHVr~ft~--~~~~Gtf~gl~ek~LdyLK~LGVna~d~wV~LmP~f~~eew~~~~pi~~l~~~Pi~E~~ 967 (1276)
|.++++++|||+|||+|++ ....|+|+|++++ |||||+||||+ |||||+| +.
T Consensus 3 ~~W~~~~viYqi~~~~F~~~~~dg~Gdl~gi~~~-Ldyl~~LGv~~----I~l~Pi~--------------------~~- 56 (543)
T 2zic_A 3 KHWWHKATVYQIYPKSFMDTNGDGIGDLKGITSK-LDYLQKLGVMA----IWLSPVY--------------------DS- 56 (543)
T ss_dssp CCGGGGCCEEEECGGGTCCSSSSSSCCHHHHHHT-HHHHHHHTCSE----EEECCCE--------------------EC-
T ss_pred ccchhhCeEEEEEcHHhcCCCCCCccCHHHHHHH-HHHHHHcCCCE----EEECCcc--------------------cC-
Confidence 3456899999999999975 4567999999996 99999999999 9999544 32
Q ss_pred cccccCCCcccCCCccccccccccccccccCCCCCCcccccccccccCCCCCccccccccccCCCCCCHHHHHHHHHHHH
Q psy9003 968 VAYAESHDQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECH 1047 (1276)
Q Consensus 968 i~~~~S~~~~~WGYdp~nyf~~d~~~y~~~S~~~Dp~~~~dap~~~yas~s~hkYt~D~~~ID~~~Gt~eEfK~LV~alH 1047 (1276)
+..+|||++.||+ +++ |+||+.+||++||++||
T Consensus 57 -------~~~~~GY~~~dy~---------------------~id-------------------p~~Gt~~df~~lv~~~h 89 (543)
T 2zic_A 57 -------PMDDNGYDIANYE---------------------AIA-------------------DIFGNMADMDNLLTQAK 89 (543)
T ss_dssp -------CCTTTTSSCSEEE---------------------EEC-------------------GGGCCHHHHHHHHHHHH
T ss_pred -------CCCCCCCCccccc---------------------ccC-------------------cccCCHHHHHHHHHHHH
Confidence 1235999999999 444 88999999999999999
Q ss_pred HcCCEEEEEEeccccCCcccCCCcCCCC-CC--Cccccc--CCCCC-----CCCC----------------CCcCCCCCc
Q psy9003 1048 KAGLYVLLDVVHSHASKNVLDGLNEFDG-TQ--ACFFHD--GPRGT-----HPLW----------------DSRLFNYSE 1101 (1276)
Q Consensus 1048 k~GI~VILDvV~NHt~~~~~~~~~~f~g-~~--~~Yy~~--~~~g~-----~~~W----------------~g~~LN~~n 1101 (1276)
++||+||||+|+|||+.+++|+.....+ .. ..||.. +|... .+.| +.++||++|
T Consensus 90 ~~Gi~VilD~V~NH~s~~~~~f~~~~~~~~~~y~d~y~~~~~p~~~~~~f~~~~w~~~~~~~~~y~~~f~~~~pdLN~~n 169 (543)
T 2zic_A 90 MRGIKIIMDLVVNHTSDEHAWFIEAREHPDSSERDYYIWCDQPNDLESIFGGSAWQYDDKSDQYYLHFFSKKQPDLNWEN 169 (543)
T ss_dssp TTTCEEEEEECCSBCCTTSHHHHHHHHCTTSGGGGGBCEESSCCSCBCTTSSBSEEEETTTTEEEECSSCTTSCBBCTTC
T ss_pred HCCCEEEEEEecCcccccchhhHhhhcCCCCCCcceeecCCCCCcccccCCCCCCcccCCCCcEEECcccCCCCccCcCC
Confidence 9999999999999999988764321111 11 234432 11110 0112 148999999
Q ss_pred HHHHHHHHHHHHHHHHhCCCcEEccCCccccccccCCCCCCCCCCCccccCCCCCchHHHHHHHHHHHHHhhCCCeEEEE
Q psy9003 1102 IEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIA 1181 (1276)
Q Consensus 1102 p~Vr~~Iidsl~~Wv~eygVDGFRfD~a~~L~~~d~g~g~~~~~~~~~~~~~~~d~~a~~Fl~el~~~Vr~~~PdvilIA 1181 (1276)
|+||++|+++++||++ +||||||||++..|.. |...+ .+ ...+....||+++++.+++ .|++++||
T Consensus 170 p~Vr~~i~~~~~~Wl~-~GvDGfRlDa~~~i~~--------~~~~~-~~---~~~~~~~~~~~~~~~~v~~-~~~~~~vg 235 (543)
T 2zic_A 170 ANLRQKIYDMMNFWID-KGIGGFRMDVIDMIGK--------IPAQH-IV---SNGPKLHAYLKEMNAASFG-QHDLLTVG 235 (543)
T ss_dssp HHHHHHHHHHHHHHHT-TTCCEEEETTGGGTTC--------BGGGT-BC---SSCTTHHHHHHHHHHHTGG-GSCCEEEE
T ss_pred HHHHHHHHHHHHHHHh-cCCCEEEECCccceee--------cCCCc-cc---cccHHHHHHHHHHHHHHhc-cCCeEEEe
Confidence 9999999999999998 8999999999999852 11000 00 1113457899999998877 68999999
Q ss_pred EccCCCCCCcccccc-CCcccCcccCC-C---c---c-------chhh-HHHHHHHHHHHHHhcccCCCCCeeEeecCCC
Q psy9003 1182 EDVSGMPASCRPVTE-GGTGFDYRLVS-L---E---G-------SALS-ALFDAAMNTTEERFKWLSADPGYVSTKHEGD 1245 (1276)
Q Consensus 1182 E~~s~~p~~~~p~~~-gglGFD~~~n~-l---E---e-------saLS-~~F~~~Ln~l~~~~p~L~~~~~~~l~nHD~~ 1245 (1276)
|.|...+....++.. ++.||++.|++ . . . ...+ .++.+.+.++...++.-.++..+++.|||++
T Consensus 236 E~~~~~~~~~~~y~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~f~~nHD~~ 315 (543)
T 2zic_A 236 ETWGATPEIAKQYSNPVNHELSMVFQFEHIGLQHKPEAPKWDYVKELNVPALKTIFNKWQTELELGQGWNSLFWNNHDLP 315 (543)
T ss_dssp ECTTCCHHHHHHHHCGGGCSCSEEECCTTGGGGBCTTSCTTSBCSSCCHHHHHHHHHHHHHHSCTTTCCCEECSCCTTSC
T ss_pred eecCCCHHHHHHHhCCCCCccceEecchhhccccccccccccccCCCCHHHHHHHHHHHHHhcccCCCeeeeeecCCCCc
Confidence 998776654444443 24567766651 1 0 0 0111 4566677766666552123455678899999
Q ss_pred eEEE
Q psy9003 1246 KVII 1249 (1276)
Q Consensus 1246 RVls 1249 (1276)
|+++
T Consensus 316 R~~~ 319 (543)
T 2zic_A 316 RVLS 319 (543)
T ss_dssp CHHH
T ss_pred cchh
Confidence 9866
|
| >2z1k_A (NEO)pullulanase; hydrolase, structural genomics, NPPSFA, national project on structural and functional analyses; HET: GLC; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-36 Score=354.38 Aligned_cols=210 Identities=17% Similarity=0.233 Sum_probs=163.7
Q ss_pred CCCCceEEEEecCCc-cccC------c----------------cCcHHHHHHhhhhHHHHcCCCCCccceeecccccccc
Q psy9003 892 KPDNLKIYESHVGIC-TQEQ------K----------------CASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDED 948 (1276)
Q Consensus 892 ~~~d~vIYElHVr~f-t~~~------~----------------~Gtf~gl~ek~LdyLK~LGVna~d~wV~LmP~f~~ee 948 (1276)
++++++|||++|++| +..+ . .|+|+|++++ |||||+||||+ |||||+|
T Consensus 3 W~~~~viYqi~~~~F~~~gd~~~~~~g~~~~~~~~~~~~~~~~~G~~~gi~~~-LdyL~~LGv~~----I~l~Pi~---- 73 (475)
T 2z1k_A 3 WYEGAFFYQIFPDRFFRAGPPGRPAPAGPFEPWEAPPTLRGFKGGTLWGVAEK-LPYLLDLGVEA----IYLNPVF---- 73 (475)
T ss_dssp TTSSCCEEEECGGGSCCCSCCCSSCCCSCCCCTTSCCCSSCCCCCCHHHHHHT-HHHHHHHTCCE----EEECCCE----
T ss_pred cccCceEEEEccCeecCCCCcccCCCccccccccCCCCccccCCCCHHHHHHH-hHHHHHcCCCE----EEECCCc----
Confidence 457899999999999 5421 2 6999999996 99999999999 9999444
Q ss_pred cccccceeeccCccccccccccccCCCcccCCCccccccccccccccccCCCCCCcccccccccccCCCCCccccccccc
Q psy9003 949 WNMGNIVHTLTNRRYMEKTVAYAESHDQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECH 1028 (1276)
Q Consensus 949 w~~~~pi~~l~~~Pi~E~~i~~~~S~~~~~WGYdp~nyf~~d~~~y~~~S~~~Dp~~~~dap~~~yas~s~hkYt~D~~~ 1028 (1276)
+. ..+|||++.||| +++
T Consensus 74 ----------------~~---------~~~~gY~~~dy~---------------------~id----------------- 90 (475)
T 2z1k_A 74 ----------------AS---------TANHRYHTVDYF---------------------QVD----------------- 90 (475)
T ss_dssp ----------------EE---------SSTTCCSEEEEE---------------------EEC-----------------
T ss_pred ----------------CC---------CCCCCcCCCCcC---------------------ccC-----------------
Confidence 32 135999999999 554
Q ss_pred cCCCCCCHHHHHHHHHHHHHcCCEEEEEEeccccCCcccCCCcCC----CCCCCccccc-C-CC------CCCCCCC---
Q psy9003 1029 KAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEF----DGTQACFFHD-G-PR------GTHPLWD--- 1093 (1276)
Q Consensus 1029 ID~~~Gt~eEfK~LV~alHk~GI~VILDvV~NHt~~~~~~~~~~f----~g~~~~Yy~~-~-~~------g~~~~W~--- 1093 (1276)
|+||+.+|||+||++||++||+||||+|+|||+.+++|+.... ....+.||.. + +. +.+..|.
T Consensus 91 --p~~Gt~~df~~lv~~~h~~Gi~VilD~V~NH~~~~~~~f~~~~~~g~~s~y~~~y~~~~~~~~~~~~~~~y~~~~~~~ 168 (475)
T 2z1k_A 91 --PILGGNEALRHLLEVAHAHGVRVILDGVFNHTGRGFFAFQHLMENGEQSPYRDWYHVKGFPLKAYTAHPNYEAWWGNP 168 (475)
T ss_dssp --GGGTCHHHHHHHHHHHHHTTCEEEEEECCSBCCTTSHHHHHHHHHGGGCTTGGGBCBCSSSCCTTSSSCSBCBGGGCT
T ss_pred --cccCCHHHHHHHHHHHHHCCCEEEEEEecccccCCCHHHHHHHhcCCCCCCcceeecCCCCCcCCCCCCCccccCCCC
Confidence 8899999999999999999999999999999999876532110 0111334432 1 21 2233332
Q ss_pred -CcCCCCCcHHHHHHHHHHHHHHHHhCCCcEEccCCccccccccCCCCCCCCCCCccccCCCCCchHHHHHHHHHHHHHh
Q psy9003 1094 -SRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHD 1172 (1276)
Q Consensus 1094 -g~~LN~~np~Vr~~Iidsl~~Wv~eygVDGFRfD~a~~L~~~d~g~g~~~~~~~~~~~~~~~d~~a~~Fl~el~~~Vr~ 1172 (1276)
.++||++||+||++|+++++||+ ++||||||||++.++. ...||+++++.+++
T Consensus 169 ~~pdln~~np~v~~~i~~~~~~w~-~~gvDGfR~D~~~~~~-------------------------~~~~~~~~~~~~~~ 222 (475)
T 2z1k_A 169 ELPKLKVETPAVREYLLAVAEHWI-RFGVDGWRLDVPNEIP-------------------------DPTFWREFRQRVKG 222 (475)
T ss_dssp TSBBBCTTSHHHHHHHHHHHHHHH-HHTCCEEEESSGGGCC-------------------------CHHHHHHHHHHHHH
T ss_pred CcCccccCCHHHHHHHHHHHHHHH-HCCCCEEeecccccCC-------------------------HHHHHHHHHHHHhh
Confidence 26999999999999999999999 7999999999998772 11399999999999
Q ss_pred hCCCeEEEEEccCCCCCCccccccCCcccCcccC
Q psy9003 1173 KYPEIITIAEDVSGMPASCRPVTEGGTGFDYRLV 1206 (1276)
Q Consensus 1173 ~~PdvilIAE~~s~~p~~~~p~~~gglGFD~~~n 1206 (1276)
.+|++++|||.|...+... ++.+||+.|+
T Consensus 223 ~~p~~~~igE~~~~~~~~~-----~~~~~d~~~n 251 (475)
T 2z1k_A 223 ANPEAYIVGEIWEEADFWL-----QGDMFDAVMN 251 (475)
T ss_dssp HCTTCEEEECCSSCCSGGG-----SSSSCSEEBC
T ss_pred cCCCcEEEEEecCCccccc-----cCCCcCeeeC
Confidence 9999999999987543221 3567887777
|
| >1m53_A Isomaltulose synthase; klebsiella SP. LX3, sucrose isomerization, isomerase; 2.20A {Klebsiella SP} SCOP: b.71.1.1 c.1.8.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-35 Score=358.49 Aligned_cols=278 Identities=15% Similarity=0.200 Sum_probs=194.1
Q ss_pred CCCCCceEEEEecCCccc--cCccCcHHHHHHhhhhHHHHcCCCCCccceeecccccccccccccceeeccCcccccccc
Q psy9003 891 KKPDNLKIYESHVGICTQ--EQKCASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTV 968 (1276)
Q Consensus 891 ~~~~d~vIYElHVr~ft~--~~~~Gtf~gl~ek~LdyLK~LGVna~d~wV~LmP~f~~eew~~~~pi~~l~~~Pi~E~~i 968 (1276)
.++++++|||+|+|+|++ ..+.|+|+|++++ |||||+||||+ |||||+| +.
T Consensus 18 ~w~~~~viYqi~~~~F~d~~~dg~Gdl~gi~~~-LdyL~~LGv~~----I~l~Pi~--------------------~~-- 70 (570)
T 1m53_A 18 AWWKEAVFYQIYPRSFKDTNDDGIGDIRGIIEK-LDYLKSLGIDA----IWINPHY--------------------DS-- 70 (570)
T ss_dssp CHHHHCCEEEECGGGTCCSSSSSSCCHHHHHHT-HHHHHHHTCCE----EEECCCE--------------------EC--
T ss_pred hhHhhCcEEEEechhhccCCCCCccCHHHHHHH-HHHHHHcCCCE----EEECCcc--------------------cC--
Confidence 345789999999999975 4567999999996 99999999999 9999544 32
Q ss_pred ccccCCCcccCCCccccccccccccccccCCCCCCcccccccccccCCCCCccccccccccCCCCCCHHHHHHHHHHHHH
Q psy9003 969 AYAESHDQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHK 1048 (1276)
Q Consensus 969 ~~~~S~~~~~WGYdp~nyf~~d~~~y~~~S~~~Dp~~~~dap~~~yas~s~hkYt~D~~~ID~~~Gt~eEfK~LV~alHk 1048 (1276)
+..+|||++.||+ +++ |+||+++||++||++||+
T Consensus 71 ------~~~~~GYd~~dy~---------------------~id-------------------p~~Gt~~df~~lv~~aH~ 104 (570)
T 1m53_A 71 ------PNTDNGYDISNYR---------------------QIM-------------------KEYGTMEDFDSLVAEMKK 104 (570)
T ss_dssp ------CCTTTTSSCSEEE---------------------EEC-------------------GGGCCHHHHHHHHHHHHH
T ss_pred ------CCCCCCCCccccc---------------------ccC-------------------cccCCHHHHHHHHHHHHH
Confidence 1235999999999 444 889999999999999999
Q ss_pred cCCEEEEEEeccccCCcccCCCcCC-CCCC--Cccccc-C-CCCCC-CC---------C----------------CCcCC
Q psy9003 1049 AGLYVLLDVVHSHASKNVLDGLNEF-DGTQ--ACFFHD-G-PRGTH-PL---------W----------------DSRLF 1097 (1276)
Q Consensus 1049 ~GI~VILDvV~NHt~~~~~~~~~~f-~g~~--~~Yy~~-~-~~g~~-~~---------W----------------~g~~L 1097 (1276)
+||+||||+|+|||+.+++|+.... .+.. ..||.. + .+|.. .+ | ..++|
T Consensus 105 ~Gi~VilD~V~NH~s~~~~wf~~~~~~~~~~y~d~y~~~~~~~g~~p~~~~~~f~~~~w~~~~~~~~~y~~~f~~~~pdL 184 (570)
T 1m53_A 105 RNMRLMIDVVINHTSDQHPWFIQSKSDKNNPYRDYYFWRDGKDNQPPNNYPSFFGGSAWQKDAKSGQYYLHYFARQQPDL 184 (570)
T ss_dssp TTCEEEEEECCSBCCTTSHHHHHHHHCTTCTTGGGBCEECCSSSSCSSCCBCTTSSBSEEECTTTCCEEECSSCTTCCBB
T ss_pred CCCEEEEEEeccccccccHHHHHhhcCCCCCCccceeecCCCCCCCCccccccCCCccccccCCCCcEEECcccCcCCcc
Confidence 9999999999999999887643221 1111 134421 1 12211 11 1 13899
Q ss_pred CCCcHHHHHHHHHHHHHHHHhCCCcEEccCCccccccccCCCCCCCCCCCc---cccC--CCCCchHHHHHHHHHHHHHh
Q psy9003 1098 NYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYD---EYFG--LNVDTDALIYLMVANKFLHD 1172 (1276)
Q Consensus 1098 N~~np~Vr~~Iidsl~~Wv~eygVDGFRfD~a~~L~~~d~g~g~~~~~~~~---~~~~--~~~d~~a~~Fl~el~~~Vr~ 1172 (1276)
|++||+||++|+++++||++ +||||||||++.+|... .+ |...+. +.++ .....+...||+++++.+++
T Consensus 185 N~~np~Vr~~l~~~~~~Wl~-~gvDGfRlDa~~~i~~~-~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~v~~ 258 (570)
T 1m53_A 185 NWDNPKVREDLYAMLRFWLD-KGVSGMRFDTVATYSKI-PG----FPNLTPEQQKNFAEQYTMGPNIHRYIQEMNRKVLS 258 (570)
T ss_dssp CTTSHHHHHHHHHHHHHHHT-TTCCEEEETTGGGSSCC-TT----CCCCCHHHHHTHHHHTTCCTTHHHHHHHHHHHTGG
T ss_pred CCCCHHHHHHHHHHHHHHHH-cCCCEEEEccccccccc-cc----cccCCCcccccccccccCchHHHHHHHHHHHHHhc
Confidence 99999999999999999996 89999999999999522 11 110000 0000 00112456899999998877
Q ss_pred hCCCeEEEEEccCCCCCCccccc-cCCcccCcccC-CC---c---cchh-----h-HHHHHHHHHHHHHhcccCCCCCee
Q psy9003 1173 KYPEIITIAEDVSGMPASCRPVT-EGGTGFDYRLV-SL---E---GSAL-----S-ALFDAAMNTTEERFKWLSADPGYV 1238 (1276)
Q Consensus 1173 ~~PdvilIAE~~s~~p~~~~p~~-~gglGFD~~~n-~l---E---esaL-----S-~~F~~~Ln~l~~~~p~L~~~~~~~ 1238 (1276)
. +++++|||.|...+.....+. .++.|||+.|+ .+ . ...+ + ..+.+.|.++...++. ..+..++
T Consensus 259 ~-~~~~~vgE~~~~~~~~~~~y~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~-~~~~~~f 336 (570)
T 1m53_A 259 R-YDVATAGEIFGVPLDRSSQFFDRRRHELNMAFMFDLIRLDRDSNERWRHKSWSLSQFRQIISKMDVTVGK-YGWNTFF 336 (570)
T ss_dssp G-SCCEEEEECTTCCGGGTHHHHCGGGCSCSEEECCTTTTTTBCSSCTTCBCCCCHHHHHHHHHHHHHHHTT-TCCBEEC
T ss_pred c-CCeEEEecccCCCHHHHHHHhcccCcccceeechhhhhcccccccccccCCCCHHHHHHHHHHHHHhccc-CCccccc
Confidence 5 699999999976664443433 23456776655 11 0 0011 1 5677777777666552 2344567
Q ss_pred EeecCCCeEEE
Q psy9003 1239 STKHEGDKVII 1249 (1276)
Q Consensus 1239 l~nHD~~RVls 1249 (1276)
+.|||++|+++
T Consensus 337 l~nHD~~R~~~ 347 (570)
T 1m53_A 337 LDNHDNPRAVS 347 (570)
T ss_dssp SCCTTSCCHHH
T ss_pred CCCCCchhhHH
Confidence 88999999876
|
| >1uok_A Oligo-1,6-glucosidase; sugar degradation, hydrolase, TIM-barrel glycosidase; 2.00A {Bacillus cereus} SCOP: b.71.1.1 c.1.8.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-35 Score=354.62 Aligned_cols=279 Identities=15% Similarity=0.214 Sum_probs=194.0
Q ss_pred CCCCCceEEEEecCCccc--cCccCcHHHHHHhhhhHHHHcCCCCCccceeecccccccccccccceeeccCcccccccc
Q psy9003 891 KKPDNLKIYESHVGICTQ--EQKCASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTV 968 (1276)
Q Consensus 891 ~~~~d~vIYElHVr~ft~--~~~~Gtf~gl~ek~LdyLK~LGVna~d~wV~LmP~f~~eew~~~~pi~~l~~~Pi~E~~i 968 (1276)
.++++++|||+|||+|++ ..+.|+|+|++++ |||||+||||+ |||+|+| +.
T Consensus 4 ~w~~~~viYqi~~~~F~d~~~dg~Gdl~gi~~~-ldyl~~LGv~~----I~l~Pi~--------------------~~-- 56 (558)
T 1uok_A 4 QWWKESVVYQIYPRSFMDSNGDGIGDLRGIISK-LDYLKELGIDV----IWLSPVY--------------------ES-- 56 (558)
T ss_dssp CHHHHCCEEEECGGGTCCSSSSSSCCHHHHHTT-HHHHHHHTCCE----EEECCCE--------------------EC--
T ss_pred hhhhcCeEEEEecHHhcCCCCCCcCCHHHHHHH-HHHHHHcCCCE----EEECCcc--------------------cC--
Confidence 345789999999999985 4567999999996 99999999999 9999544 32
Q ss_pred ccccCCCcccCCCccccccccccccccccCCCCCCcccccccccccCCCCCccccccccccCCCCCCHHHHHHHHHHHHH
Q psy9003 969 AYAESHDQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHK 1048 (1276)
Q Consensus 969 ~~~~S~~~~~WGYdp~nyf~~d~~~y~~~S~~~Dp~~~~dap~~~yas~s~hkYt~D~~~ID~~~Gt~eEfK~LV~alHk 1048 (1276)
+..+|||++.||+ +++ |+||+.+||++||++||+
T Consensus 57 ------~~~~~GYd~~dy~---------------------~id-------------------~~~Gt~~df~~lv~~~h~ 90 (558)
T 1uok_A 57 ------PNDDNGYDISDYC---------------------KIM-------------------NEFGTMEDWDELLHEMHE 90 (558)
T ss_dssp ------CCTTTTSSCSEEE---------------------EEC-------------------GGGCCHHHHHHHHHHHHH
T ss_pred ------CCCCCCCCccccc---------------------ccC-------------------cccCCHHHHHHHHHHHHH
Confidence 1235899999999 444 889999999999999999
Q ss_pred cCCEEEEEEeccccCCcccCCCcCC-CCCCC--ccccc-C-CCCCC-CC---------C----------------CCcCC
Q psy9003 1049 AGLYVLLDVVHSHASKNVLDGLNEF-DGTQA--CFFHD-G-PRGTH-PL---------W----------------DSRLF 1097 (1276)
Q Consensus 1049 ~GI~VILDvV~NHt~~~~~~~~~~f-~g~~~--~Yy~~-~-~~g~~-~~---------W----------------~g~~L 1097 (1276)
+||+||||+|+|||+.+++|+.... .+..+ .||.. + .+|.. .+ | ..++|
T Consensus 91 ~Gi~VilD~V~NH~s~~~~wf~~~~~~~~~~y~d~y~~~~~~~g~~p~~~~~~f~~~~w~~~~~~~~~y~~~f~~~~pdL 170 (558)
T 1uok_A 91 RNMKLMMDLVVNHTSDEHNWFIESRKSKDNKYRDYYIWRPGKEGKEPNNWGAAFSGSAWQYDEMTDEYYLHLFSKKQPDL 170 (558)
T ss_dssp TTCEEEEEECCSBCCTTSHHHHHHTTCTTCTTGGGBCEECCSSSSCSSCBBCTTSSBSEEEETTTTEEEECSSCTTSCBB
T ss_pred CCCEEEEEEecccccccchHHHHHhcCCCCCcccceEeccCcCCCCCccccccCCCccccccCCcCcEEeeccccccccc
Confidence 9999999999999999987653222 12222 34422 1 12211 11 2 13889
Q ss_pred CCCcHHHHHHHHHHHHHHHHhCCCcEEccCCccccccccCCCCC------CCCCCCccccCCCCCchHHHHHHHHHHHHH
Q psy9003 1098 NYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGE------GFSGHYDEYFGLNVDTDALIYLMVANKFLH 1171 (1276)
Q Consensus 1098 N~~np~Vr~~Iidsl~~Wv~eygVDGFRfD~a~~L~~~d~g~g~------~~~~~~~~~~~~~~d~~a~~Fl~el~~~Vr 1171 (1276)
|++||+||++|+++++||++ +||||||||++.+|... .++.. .|... ..++ ...++...||+++++.++
T Consensus 171 n~~np~Vr~~i~~~~~~W~~-~gvDGfRlDa~~~i~~~-~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~l~~~~~~~~ 245 (558)
T 1uok_A 171 NWDNEKVRQDVYEMMKFWLE-KGIDGFRMDVINFISKE-EGLPTVETEEEGYVSG-HKHF--MNGPNIHKYLHEMNEEVL 245 (558)
T ss_dssp CTTSHHHHHHHHHHHHHHHH-TTCCEEEETTGGGSCCC-TTCCCCCCCCSSCBCC-GGGT--TTCTTHHHHHHHHHHHTG
T ss_pred cCCCHHHHHHHHHHHHHHHH-cCCCEEEEccccccccc-cccCCCCCcccccccc-cccc--cCChHHHHHHHHHHHHhh
Confidence 99999999999999999997 89999999999998532 11110 01000 0000 112346789999999887
Q ss_pred hhCCCeEEEEEccCCCCCCcccccc-CCcccCcccC----CCc---c-----chhh-HHHHHHHHHHHHHhcccCCCCCe
Q psy9003 1172 DKYPEIITIAEDVSGMPASCRPVTE-GGTGFDYRLV----SLE---G-----SALS-ALFDAAMNTTEERFKWLSADPGY 1237 (1276)
Q Consensus 1172 ~~~PdvilIAE~~s~~p~~~~p~~~-gglGFD~~~n----~lE---e-----saLS-~~F~~~Ln~l~~~~p~L~~~~~~ 1237 (1276)
+. +++++|||.|...+.....+.. ++.+||+.|+ ... . ..++ ..+...+.++...++. ..+..+
T Consensus 246 ~~-~~~~~vgE~~~~~~~~~~~y~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~-~~~~~~ 323 (558)
T 1uok_A 246 SH-YDIMTVGEMPGVTTEEAKLYTGEERKELQMVFQFEHMDLDSGEGGKWDVKPCSLLTLKENLTKWQKALEH-TGWNSL 323 (558)
T ss_dssp GG-SCCEEEEECTTCCHHHHHHHHCGGGCSCSCEECCGGGSTTEETTEEEEECCCCHHHHHHHHHHHHHHTSS-SSCCEE
T ss_pred cc-CCeEEEEeccCCCHHHHHHHhccCCCccceEEehhhhhcccccccccccCCCCHHHHHHHHHHHHHhccc-CCccce
Confidence 75 5899999999765533333332 2345665554 110 0 0111 5677777777666552 245557
Q ss_pred eEeecCCCeEEE
Q psy9003 1238 VSTKHEGDKVII 1249 (1276)
Q Consensus 1238 ~l~nHD~~RVls 1249 (1276)
++.|||++|+++
T Consensus 324 fl~NHD~~R~~~ 335 (558)
T 1uok_A 324 YWNNHDQPRVVS 335 (558)
T ss_dssp CSCCTTSCCHHH
T ss_pred eecCCCccchhh
Confidence 789999999765
|
| >3aj7_A Oligo-1,6-glucosidase; (beta/alpha)8-barrel, hydrolase; 1.30A {Saccharomyces cerevisiae} PDB: 3a4a_A* 3a47_A 3axi_A* 3axh_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-35 Score=359.81 Aligned_cols=281 Identities=15% Similarity=0.143 Sum_probs=193.9
Q ss_pred CCCCCceEEEEecCCccc--cCccCcHHHHHHhhhhHHHHcCCCCCccceeecccccccccccccceeeccCcccccccc
Q psy9003 891 KKPDNLKIYESHVGICTQ--EQKCASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTV 968 (1276)
Q Consensus 891 ~~~~d~vIYElHVr~ft~--~~~~Gtf~gl~ek~LdyLK~LGVna~d~wV~LmP~f~~eew~~~~pi~~l~~~Pi~E~~i 968 (1276)
.++++++|||+|||+|++ ..+.|+|+|++++ |||||+||||+ |||||+| +.
T Consensus 13 ~w~~~~viYqi~~~~F~d~~~dg~Gdl~gi~~~-Ldyl~~LGv~~----i~l~Pi~--------------------~~-- 65 (589)
T 3aj7_A 13 KWWKEATFYQIYPASFKDSNDDGWGDMKGIASK-LEYIKELGADA----IWISPFY--------------------DS-- 65 (589)
T ss_dssp CHHHHCCEEEECGGGSCCSSSSSSCCHHHHHHT-HHHHHHHTCSE----EEECCCE--------------------EC--
T ss_pred cchhhCeEEEEEhHHhcCCCCCCccCHHHHHHH-HHHHHHcCCCE----EEECCcc--------------------cC--
Confidence 345789999999999975 4568999999996 99999999999 9999544 32
Q ss_pred ccccCCCcccCCCccccccccccccccccCCCCCCcccccccccccCCCCCccccccccccCCCCCCHHHHHHHHHHHHH
Q psy9003 969 AYAESHDQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHK 1048 (1276)
Q Consensus 969 ~~~~S~~~~~WGYdp~nyf~~d~~~y~~~S~~~Dp~~~~dap~~~yas~s~hkYt~D~~~ID~~~Gt~eEfK~LV~alHk 1048 (1276)
+..+|||++.||+ +++ |+||+.+||++||++||+
T Consensus 66 ------~~~~~GY~~~dy~---------------------~id-------------------~~~Gt~~df~~lv~~~h~ 99 (589)
T 3aj7_A 66 ------PQDDMGYDIANYE---------------------KVW-------------------PTYGTNEDCFALIEKTHK 99 (589)
T ss_dssp ------CCTTTTSSCSEEE---------------------EEC-------------------TTTCCHHHHHHHHHHHHH
T ss_pred ------CCCCCCcCccccc---------------------ccc-------------------cccCCHHHHHHHHHHHHH
Confidence 1235999999999 444 899999999999999999
Q ss_pred cCCEEEEEEeccccCCcccCCCcCCCCCC---Cccccc-CCCC--------CCCCCC-----------------------
Q psy9003 1049 AGLYVLLDVVHSHASKNVLDGLNEFDGTQ---ACFFHD-GPRG--------THPLWD----------------------- 1093 (1276)
Q Consensus 1049 ~GI~VILDvV~NHt~~~~~~~~~~f~g~~---~~Yy~~-~~~g--------~~~~W~----------------------- 1093 (1276)
+||+||||+|+|||+.+++|+.....+.. +.||.. ++.+ ...+|.
T Consensus 100 ~Gi~VilD~V~NH~~~~~~wf~~~~~~~~~~y~d~y~~~~~~~~~~~g~~~~p~~~~~~f~g~~w~~~~~~~~~y~~~f~ 179 (589)
T 3aj7_A 100 LGMKFITDLVINHCSSEHEWFKESRSSKTNPKRDWFFWRPPKGYDAEGKPIPPNNWKSYFGGSAWTFDEKTQEFYLRLFC 179 (589)
T ss_dssp TTCEEEEEECCSBCCTTSHHHHHHTTCSSSTTGGGBCEECCSEECTTSCEECSSCBBCTTSSBSEEEETTTTEEEECSSS
T ss_pred CCCEEEEEecccccccchhHHHHHhcCCCCCCCCceeecCCcccccccCCCCCCcccccCCCccceecCCCCeEEECccC
Confidence 99999999999999998876532221111 234432 2110 011221
Q ss_pred --CcCCCCCcHHHHHHHHH-HHHHHHHhCCCcEEccCCccccccccCCCCCCCC-----CCCc--cccCCCCCchHHHHH
Q psy9003 1094 --SRLFNYSEIEVLRFLLS-NLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFS-----GHYD--EYFGLNVDTDALIYL 1163 (1276)
Q Consensus 1094 --g~~LN~~np~Vr~~Iid-sl~~Wv~eygVDGFRfD~a~~L~~~d~g~g~~~~-----~~~~--~~~~~~~d~~a~~Fl 1163 (1276)
.++||++||+||++|++ +++||++ +||||||||++.+|.+. .++. +.+ +.|. ..+. ...++...||
T Consensus 180 ~~~pdLN~~np~Vr~~l~~~~~~~Wl~-~gvDGfRlDa~~~i~~~-~~~~-d~~~~~~~~~~~~~~~~~-~n~~~~~~~l 255 (589)
T 3aj7_A 180 STQPDLNWENEDCRKAIYESAVGYWLD-HGVDGFRIDVGSLYSKV-VGLP-DAPVVDKNSTWQSSDPYT-LNGPRIHEFH 255 (589)
T ss_dssp TTCCBBCTTCHHHHHHHHHHHTHHHHH-TTCCEEEETTGGGSCCC-TTCC-CCCCCCTTCSSBCCHHHH-SSCTTHHHHH
T ss_pred CCCCccCCCCHHHHHHHHHHHHHHHHh-cCCCEEEEccccccccc-cCCC-cCCccccccccccccccc-cccHHHHHHH
Confidence 37999999999999999 9999998 79999999999999532 1110 000 0000 0000 1113467899
Q ss_pred HHHHH----HHHhhCCCeEEEEEccCCCCCCccccc-cCCcccCcccCCC----c---c-----chhh-HHHHHHHHHHH
Q psy9003 1164 MVANK----FLHDKYPEIITIAEDVSGMPASCRPVT-EGGTGFDYRLVSL----E---G-----SALS-ALFDAAMNTTE 1225 (1276)
Q Consensus 1164 ~el~~----~Vr~~~PdvilIAE~~s~~p~~~~p~~-~gglGFD~~~n~l----E---e-----saLS-~~F~~~Ln~l~ 1225 (1276)
+++++ .+++ .|++++|||.|...+.....+. .++.||++.|++- . . ...+ ..+.+.+.++.
T Consensus 256 ~~~~~~~~~~v~~-~~~~~~vgE~~~~~~~~~~~y~~~~~~~~~~~f~f~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 334 (589)
T 3aj7_A 256 QEMNQFIRNRVKD-GREIMTVGEMQHASDETKRLYTSASRHELSELFNFSHTDVGTSPLFRYNLVPFELKDWKIALAELF 334 (589)
T ss_dssp HHHHHHHHHHCSS-CCCCEEEEEEECCCHHHHHHHHCGGGCSCSEEEECHHHHTTEETTEEEEECCCCHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhcc-CCCeEEEEEeCCCCHHHHHHhhccCCCccceeeehhhhhhhcccccccccCCCCHHHHHHHHHHHH
Confidence 99998 6666 7899999999987665433333 2345666655511 0 0 0111 45666666555
Q ss_pred HHhcccCCCCCeeEeecCCCeEEE
Q psy9003 1226 ERFKWLSADPGYVSTKHEGDKVII 1249 (1276)
Q Consensus 1226 ~~~p~L~~~~~~~l~nHD~~RVls 1249 (1276)
..++.-.++..+++.|||++|+++
T Consensus 335 ~~~~~~~~~~~~fl~NHD~~R~~~ 358 (589)
T 3aj7_A 335 RYINGTDCWSTIYLENHDQPRSIT 358 (589)
T ss_dssp GGGTTSSCCCEECSCCTTSCCHHH
T ss_pred HhcccCCCcccccccCCCCcchHH
Confidence 444421344557789999999876
|
| >3edf_A FSPCMD, cyclomaltodextrinase; alpha-cyclodextrin complex, glycosidase, hydrolase; HET: CE6 ACX; 1.65A {Flavobacterium SP} PDB: 3edj_A* 3edk_A* 3ede_A 3edd_A* 1h3g_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-34 Score=351.12 Aligned_cols=206 Identities=16% Similarity=0.176 Sum_probs=161.7
Q ss_pred CCCCceEEEEecCCccccC---------------------ccCcHHHHHHhhhhHHHHcCCCCCccceeecccccccccc
Q psy9003 892 KPDNLKIYESHVGICTQEQ---------------------KCASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWN 950 (1276)
Q Consensus 892 ~~~d~vIYElHVr~ft~~~---------------------~~Gtf~gl~ek~LdyLK~LGVna~d~wV~LmP~f~~eew~ 950 (1276)
.+++.||||++++.|+... ..|+|+|++++ ||||++||||+ |||+|+|+
T Consensus 103 ~~~~~viY~i~~drF~~gd~~nd~~~~~~~~~~~~~~~~~~gGdl~gi~~~-Ldyl~~LGv~a----I~l~Pi~~----- 172 (601)
T 3edf_A 103 FGPGDAIYQIMPDRFANGDPSNDNVAGMREQADRRHGGGRHGGDIRGTIDH-LDYIAGLGFTQ----LWPTPLVE----- 172 (601)
T ss_dssp CCTTCCEEEECHHHHCCSCGGGSSCTTCSCCCCTTSTTSCCCCCHHHHHHT-HHHHHHTTCCE----EEESCCEE-----
T ss_pred CCccCeEEEEehHHhcCCCCCcCcCcCcccccCccccccccCcCHHHHHHH-HHHHHHcCCCE----EEECcccc-----
Confidence 4467899999999996310 46999999996 99999999999 99995553
Q ss_pred cccceeeccCccccccccccccCCCcccCCCccccccccccccccccCCCCCCcccccccccccCCCCCccccccccccC
Q psy9003 951 MGNIVHTLTNRRYMEKTVAYAESHDQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKA 1030 (1276)
Q Consensus 951 ~~~pi~~l~~~Pi~E~~i~~~~S~~~~~WGYdp~nyf~~d~~~y~~~S~~~Dp~~~~dap~~~yas~s~hkYt~D~~~ID 1030 (1276)
. +. ....+|||++.||+ +++
T Consensus 173 ---------------~--~~---~~~~~~GY~~~dy~---------------------~id------------------- 192 (601)
T 3edf_A 173 ---------------N--DA---AAYSYHGYAATDHY---------------------RID------------------- 192 (601)
T ss_dssp ---------------C--CC---SSSGGGCCSCSEEE---------------------EEC-------------------
T ss_pred ---------------C--CC---CCCCCCCcCccccc---------------------ccc-------------------
Confidence 2 10 12357999999998 444
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEEEeccccCCcccCCCcCCCCCCCcccccCCC---------------CC-------
Q psy9003 1031 GLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPR---------------GT------- 1088 (1276)
Q Consensus 1031 ~~~Gt~eEfK~LV~alHk~GI~VILDvV~NHt~~~~~~~~~~f~g~~~~Yy~~~~~---------------g~------- 1088 (1276)
|+||+.+|||+||++||++||+||||+|+||++.+++|+.. .....||...+. +.
T Consensus 193 p~~Gt~~df~~Lv~~aH~~Gi~VilD~V~NH~~~~~~~~~~---~p~~dw~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 269 (601)
T 3edf_A 193 PRYGSNEDFVRLSTEARKRGMGLIQDVVLSHIGKHHWWMKD---LPTPDWINYGGKFVPTQHHRVAVQDPYAAQADSENF 269 (601)
T ss_dssp TTTCCHHHHHHHHHHHHHTTCEEEEEECCSBCCTTSGGGGS---CSSTTSBGGGGSCCBCCCCGGGGGCTTCCHHHHHHH
T ss_pred ccCCCHHHHHHHHHHHHHcCCEEEEEECCcccCCcchhhhh---CCccCceeeCCCCCCCccccccccCCCCcccccccc
Confidence 99999999999999999999999999999999999876431 111233322100 00
Q ss_pred CCCC---CCcCCCCCcHHHHHHHHHHHHHHHHhCCCcEEccCCccccccccCCCCCCCCCCCccccCCCCCchHHHHHHH
Q psy9003 1089 HPLW---DSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMV 1165 (1276)
Q Consensus 1089 ~~~W---~g~~LN~~np~Vr~~Iidsl~~Wv~eygVDGFRfD~a~~L~~~d~g~g~~~~~~~~~~~~~~~d~~a~~Fl~e 1165 (1276)
...| +-++||++||+||++|+++++||+++|||||||||++.++. ..||++
T Consensus 270 ~~~wf~~~lpdLN~~np~V~~~l~~~~~~Wi~~~GVDGfRlD~~~~~~--------------------------~~f~~~ 323 (601)
T 3edf_A 270 TKGWFVEGMPDLNQTNPLVANYLIQNNIWWIEYAGLSGLRIDTYGYSD--------------------------GAFLTE 323 (601)
T ss_dssp HHSBSSTTSCBBCTTSHHHHHHHHHHHHHHHHHHTCSEEEESSGGGSC--------------------------HHHHHH
T ss_pred ccccccccccccccCCHHHHHHHHHHHHHHHhhcCCCEEEeeccccCC--------------------------HHHHHH
Confidence 0012 23789999999999999999999988999999999998772 359999
Q ss_pred HHHHHHhhCCCeEEEEEccCCCCCCcccccc
Q psy9003 1166 ANKFLHDKYPEIITIAEDVSGMPASCRPVTE 1196 (1276)
Q Consensus 1166 l~~~Vr~~~PdvilIAE~~s~~p~~~~p~~~ 1196 (1276)
+++.+++.+|++++|||.|...+.....+..
T Consensus 324 ~~~~v~~~~p~~~~vgE~~~~~~~~~~~~~~ 354 (601)
T 3edf_A 324 YTRRLMAEYPRLNMVGQEWSTRVPVVARWQR 354 (601)
T ss_dssp HHHHHHHHCTTCEEEECCCCSCHHHHHTTST
T ss_pred HHHHHHHhCCCeEEEeeecCCchHHHhhhhc
Confidence 9999999999999999999877765555543
|
| >2ze0_A Alpha-glucosidase; TIM barrel, glucoside hydrolase, extremophIle, hydrolase; 2.00A {Geobacillus SP} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-35 Score=351.51 Aligned_cols=281 Identities=15% Similarity=0.190 Sum_probs=192.9
Q ss_pred CCCCCceEEEEecCCccc--cCccCcHHHHHHhhhhHHHHcCCCCCccceeecccccccccccccceeeccCcccccccc
Q psy9003 891 KKPDNLKIYESHVGICTQ--EQKCASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTV 968 (1276)
Q Consensus 891 ~~~~d~vIYElHVr~ft~--~~~~Gtf~gl~ek~LdyLK~LGVna~d~wV~LmP~f~~eew~~~~pi~~l~~~Pi~E~~i 968 (1276)
.++++++|||+|||+|+. ....|+|+|++++ |||||+||||+ |||||++ +.
T Consensus 4 ~w~~~~viYqi~~~~F~d~~~dg~Gd~~gi~~~-ldyl~~lGv~~----i~l~Pi~--------------------~~-- 56 (555)
T 2ze0_A 4 TWWKEGVAYQIYPRSFMDANGDGIGDLRGIIEK-LDYLVELGVDI----VWICPIY--------------------RS-- 56 (555)
T ss_dssp CHHHHCCEEEECGGGTCCSSSSSSCCHHHHHHT-HHHHHHHTCCE----EEECCCE--------------------EC--
T ss_pred hhhhcCcEEEEEchHhcCCCCCCcCCHHHHHHH-HHHHHHcCCCE----EEeCCcc--------------------cC--
Confidence 345789999999999985 4567999999996 99999999999 9999544 32
Q ss_pred ccccCCCcccCCCccccccccccccccccCCCCCCcccccccccccCCCCCccccccccccCCCCCCHHHHHHHHHHHHH
Q psy9003 969 AYAESHDQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHK 1048 (1276)
Q Consensus 969 ~~~~S~~~~~WGYdp~nyf~~d~~~y~~~S~~~Dp~~~~dap~~~yas~s~hkYt~D~~~ID~~~Gt~eEfK~LV~alHk 1048 (1276)
+..+|||++.||+ +++ |+||+.+||++||++||+
T Consensus 57 ------~~~~~gY~~~dy~---------------------~id-------------------~~~Gt~~d~~~lv~~~h~ 90 (555)
T 2ze0_A 57 ------PNADNGYDISDYY---------------------AIM-------------------DEFGTMDDFDELLAQAHR 90 (555)
T ss_dssp ------CCTTTTCSCSEEE---------------------EEC-------------------GGGCCHHHHHHHHHHHHH
T ss_pred ------CCCCCCcCccccc---------------------ccC-------------------cccCCHHHHHHHHHHHHH
Confidence 1235899999999 444 889999999999999999
Q ss_pred cCCEEEEEEeccccCCcccCCCcCC-CCCC--Cccccc-CC-CCC-CCCC-------------------------CCcCC
Q psy9003 1049 AGLYVLLDVVHSHASKNVLDGLNEF-DGTQ--ACFFHD-GP-RGT-HPLW-------------------------DSRLF 1097 (1276)
Q Consensus 1049 ~GI~VILDvV~NHt~~~~~~~~~~f-~g~~--~~Yy~~-~~-~g~-~~~W-------------------------~g~~L 1097 (1276)
+||+||||+|+||++.+++|+.... .+.. ..||.. ++ +|. ..+| ..++|
T Consensus 91 ~Gi~vilD~V~NH~~~~~~~f~~~~~~~~~~~~~~y~~~~~~~g~~p~~~~~~f~~~~w~~~~~~~~~~~~~f~~~~pdL 170 (555)
T 2ze0_A 91 RGLKVILDLVINHTSDEHPWFIESRSSRDNPKRDWYIWRDGKDGREPNNWESIFGGSAWQYDERTGQYYLHIFDVKQPDL 170 (555)
T ss_dssp TTCEEEEEEECSBCCTTSHHHHHHHHCSSSTTGGGBCEECCBTTBCSSCEECTTSSBSEEEETTTTEEEECSSCTTCCBB
T ss_pred CCCEEEEEEecccccchhhHHHHhhcCCCCCccccccccCCCCCCCCCcccccCCCccceecCCCCceeecccCccCCcc
Confidence 9999999999999999876642211 1111 234422 11 221 1111 13789
Q ss_pred CCCcHHHHHHHHHHHHHHHHhCCCcEEccCCccccccccCCCCCCCCCCCccccC-----CCCCchHHHHHHHHHHHHHh
Q psy9003 1098 NYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFG-----LNVDTDALIYLMVANKFLHD 1172 (1276)
Q Consensus 1098 N~~np~Vr~~Iidsl~~Wv~eygVDGFRfD~a~~L~~~d~g~g~~~~~~~~~~~~-----~~~d~~a~~Fl~el~~~Vr~ 1172 (1276)
|++||+||++|+++++||++ +||||||||++.+|... .++..... ...+.++ ....++..+||+++++.+++
T Consensus 171 n~~np~V~~~l~~~~~~W~~-~gvDGfRlDa~~~i~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~r~~v~~ 247 (555)
T 2ze0_A 171 NWENSEVRQALYEMVNWWLD-KGIDGFRIDAISHIKKK-PGLPDLPN-PKGLKYVPSFAGHMNQPGIMEYLRELKEQTFA 247 (555)
T ss_dssp CTTCHHHHHHHHHHHHHHHH-HTCCEEEEESGGGSSCC-TTCCCCC-----CCSEECHHHHSSCTTHHHHHHHHHHHTGG
T ss_pred CCCCHHHHHHHHHHHHHHHH-cCCCEEEEccccccccc-cccccCCc-ccccccccccccccCcHHHHHHHHHHHHHhhc
Confidence 99999999999999999997 79999999999998532 11110000 0000000 01123456899999988876
Q ss_pred hCCCeEEEEEccCCCCCCcccccc-CCcccCcccC-C----Ccc---chhh-HHHHHHHHHHHHHhcccCCCCCeeEeec
Q psy9003 1173 KYPEIITIAEDVSGMPASCRPVTE-GGTGFDYRLV-S----LEG---SALS-ALFDAAMNTTEERFKWLSADPGYVSTKH 1242 (1276)
Q Consensus 1173 ~~PdvilIAE~~s~~p~~~~p~~~-gglGFD~~~n-~----lEe---saLS-~~F~~~Ln~l~~~~p~L~~~~~~~l~nH 1242 (1276)
. +++++|||.|+..+.....+.. ++.+|++.|+ . +.. ..++ .++.+.+.++...++. .++..+++.||
T Consensus 248 ~-~~~~~vgE~~~~~~~~~~~y~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~fl~NH 325 (555)
T 2ze0_A 248 R-YDIMTVGEANGVTVDEAEQWVGEENGVFNMIFQFEHLGLWERRADGSIDVRRLKRTLTKWQKGLEN-RGWNALFLENH 325 (555)
T ss_dssp G-SSCEEEEECTTCCTTTTHHHHCSSSCSCSEEECCTTCCCCCCCC--CCCHHHHHHHHHHHHHHHTT-TCCBEECSCCT
T ss_pred c-CCeEEEeccCCCCHHHHHHHhccccccccceeehHHHhhhhccccCCCCHHHHHHHHHHHHhhccC-CCceeeeecCC
Confidence 5 4899999999766655444432 2345554444 1 110 1111 5677777777666652 34455678899
Q ss_pred CCCeEEE
Q psy9003 1243 EGDKVII 1249 (1276)
Q Consensus 1243 D~~RVls 1249 (1276)
|++|+++
T Consensus 326 D~~R~~s 332 (555)
T 2ze0_A 326 DLPRSVS 332 (555)
T ss_dssp TSCCHHH
T ss_pred CCcchhh
Confidence 9999765
|
| >2aaa_A Alpha-amylase; glycosidase; 2.10A {Aspergillus niger} SCOP: b.71.1.1 c.1.8.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=8.4e-35 Score=343.86 Aligned_cols=258 Identities=19% Similarity=0.205 Sum_probs=179.8
Q ss_pred CCCCceEEEEecCCcccc--Cc------------cCcHHHHHHhhhhHHHHcCCCCCccceeecccccccccccccceee
Q psy9003 892 KPDNLKIYESHVGICTQE--QK------------CASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHT 957 (1276)
Q Consensus 892 ~~~d~vIYElHVr~ft~~--~~------------~Gtf~gl~ek~LdyLK~LGVna~d~wV~LmP~f~~eew~~~~pi~~ 957 (1276)
.|++.+|||+|||+|+.. .. .|+|+|++++ |||||+||||+ |||||+++..
T Consensus 5 ~w~~~viYqi~~~~F~~~~~~~~~~~~~~~~~~~gG~~~gi~~~-LdyL~~LGv~~----I~l~Pi~~~~---------- 69 (484)
T 2aaa_A 5 SWRTQSIYFLLTDRFGRTDNSTTATCNTGNEIYCGGSWQGIIDH-LDYIEGMGFTA----IWISPITEQL---------- 69 (484)
T ss_dssp HHTTCCEEECCHHHHCCTTCCSCCCCCGGGCSCCCCCHHHHHHT-HHHHHTTTCCE----EEECCCEEEC----------
T ss_pred hhccCcEEEEeCccccCCCCCCCCCCCccccccCCCCHHHHHHH-HHHHHhcCCCE----EEeCccccCc----------
Confidence 356789999999999752 11 3999999996 99999999999 9999666420
Q ss_pred ccCccccccccccccCCCcccCCCccccccccccccccccCCCCCCcccccccccccCCCCCccccccccccCCCCCCHH
Q psy9003 958 LTNRRYMEKTVAYAESHDQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPE 1037 (1276)
Q Consensus 958 l~~~Pi~E~~i~~~~S~~~~~WGYdp~nyf~~d~~~y~~~S~~~Dp~~~~dap~~~yas~s~hkYt~D~~~ID~~~Gt~e 1037 (1276)
.. ..+....+|||++.||| +++ |+||+.+
T Consensus 70 -----~~------~~~~~~~~~GY~~~dy~---------------------~id-------------------~~~Gt~~ 98 (484)
T 2aaa_A 70 -----PQ------DTADGEAYHGYWQQKIY---------------------DVN-------------------SNFGTAD 98 (484)
T ss_dssp -----CC------CBTTBCSTTSCSEEEEE---------------------EEC-------------------TTTCCHH
T ss_pred -----cc------ccccCCCCCCcCccccc---------------------ccC-------------------cccCCHH
Confidence 00 00112367999999998 554 8999999
Q ss_pred HHHHHHHHHHHcCCEEEEEEeccccCCcccCC---CcCCCCC-CCcccccCCC-CC-------CCCCC------CcCCCC
Q psy9003 1038 QLKYLVDECHKAGLYVLLDVVHSHASKNVLDG---LNEFDGT-QACFFHDGPR-GT-------HPLWD------SRLFNY 1099 (1276)
Q Consensus 1038 EfK~LV~alHk~GI~VILDvV~NHt~~~~~~~---~~~f~g~-~~~Yy~~~~~-g~-------~~~W~------g~~LN~ 1099 (1276)
|||+||++||++||+||||+|+||++.++... ...|... ...||+.... .. ...|. .++||+
T Consensus 99 df~~lv~~~H~~Gi~VilD~V~NH~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~dln~ 178 (484)
T 2aaa_A 99 NLKSLSDALHARGMYLMVDVVPDHMGYAGNGNDVDYSVFDPFDSSSYFHPYCLITDWDNLTMVEDCWEGDTIVSLPDLDT 178 (484)
T ss_dssp HHHHHHHHHHTTTCEEEEEECCSBCCBSSCGGGCCGGGSBSCCSGGGBCCCCBCCCTTCHHHHHHSBEECSSSEECBBCT
T ss_pred HHHHHHHHHHHCCCEEEEEECcCCcCCCCCCCcccccccccCCcccccCCCCCcccCCCCccccccccccCccccCcccc
Confidence 99999999999999999999999999865311 0112211 1233432110 01 12343 479999
Q ss_pred CcHHHHHHHHHHHHHHHHhCCCcEEccCCccccccccCCCCCCCCCCCccccCCCCCchHHHHHHHHHHHHHhhCCCeEE
Q psy9003 1100 SEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIIT 1179 (1276)
Q Consensus 1100 ~np~Vr~~Iidsl~~Wv~eygVDGFRfD~a~~L~~~d~g~g~~~~~~~~~~~~~~~d~~a~~Fl~el~~~Vr~~~Pdvil 1179 (1276)
+||+||++|++++++|+++|||||||||++.+|. .+||+++++. |++++
T Consensus 179 ~np~v~~~l~~~~~~w~~~~gvDGfR~D~~~~i~--------------------------~~f~~~~~~~-----~~~~~ 227 (484)
T 2aaa_A 179 TETAVRTIWYDWVADLVSNYSVDGLRIDSVLEVQ--------------------------PDFFPGYNKA-----SGVYC 227 (484)
T ss_dssp TSHHHHHHHHHHHHHHHHHHTCCEEEESCSTTSC--------------------------GGGHHHHHHH-----HTSEE
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCEEEecccccCC--------------------------HHHHHHHHhc-----CCcEE
Confidence 9999999999999999999999999999999883 1378888753 78999
Q ss_pred EEEccCCCCCCccccccCCcccCcccC-CCcc---chh------hHHHHHHHHHHHHHhcccCCCCCeeEeecCCCeEEE
Q psy9003 1180 IAEDVSGMPASCRPVTEGGTGFDYRLV-SLEG---SAL------SALFDAAMNTTEERFKWLSADPGYVSTKHEGDKVII 1249 (1276)
Q Consensus 1180 IAE~~s~~p~~~~p~~~gglGFD~~~n-~lEe---saL------S~~F~~~Ln~l~~~~p~L~~~~~~~l~nHD~~RVls 1249 (1276)
|||.|...+....++. .+||+.|+ .+.. .++ ...+...+..+...++. .....+++.|||++|+.+
T Consensus 228 igE~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~-~~~~~~f~~nHD~~r~~~ 303 (484)
T 2aaa_A 228 VGEIDNGNPASDCPYQ---KVLDGVLNYPIYWQLLYAFESSSGSISNLYNMIKSVASDCSD-PTLLGNFIENHDNPRFAK 303 (484)
T ss_dssp EECCCCSCHHHHGGGG---GTSSEEBCHHHHHHHHHHHSSTTSCHHHHHHHHHHHHHHCSC-GGGSEECSCCTTSCCGGG
T ss_pred EecCCCCChHHHHhhc---ccCCceeccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCC-hhhhceeccCCCcccccc
Confidence 9999987776555443 23555555 1100 000 14455555555554542 112236678999999765
Q ss_pred E
Q psy9003 1250 F 1250 (1276)
Q Consensus 1250 f 1250 (1276)
.
T Consensus 304 ~ 304 (484)
T 2aaa_A 304 Y 304 (484)
T ss_dssp T
T ss_pred c
Confidence 4
|
| >3dhu_A Alpha-amylase; structural genomics, hydrolase, glycosidase, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-35 Score=341.37 Aligned_cols=255 Identities=19% Similarity=0.281 Sum_probs=182.4
Q ss_pred CCCCCceEEEEecCCccccCccCcHHHHHHhhhhHHHHcCCCCCccceeecccccccccccccceeeccCcccccccccc
Q psy9003 891 KKPDNLKIYESHVGICTQEQKCASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAY 970 (1276)
Q Consensus 891 ~~~~d~vIYElHVr~ft~~~~~Gtf~gl~ek~LdyLK~LGVna~d~wV~LmP~f~~eew~~~~pi~~l~~~Pi~E~~i~~ 970 (1276)
.++++++|||+|+|+|+. .|+|+|++++ ||||++||||+ |||+|+++. + .
T Consensus 8 ~w~~~~viYei~~~~f~~---~G~~~~i~~~-l~yl~~lG~~~----i~l~Pi~~~---------------~-------~ 57 (449)
T 3dhu_A 8 TQLRNEMIYSVFVRNYSE---AGNFAGVTAD-LQRIKDLGTDI----LWLLPINPI---------------G-------E 57 (449)
T ss_dssp GGGGGCCEEEECHHHHSS---SCSHHHHHTT-HHHHHHHTCSE----EEECCCSCB---------------C-------S
T ss_pred hhhhcCEEEEEEhhhhCC---CCCHHHHHHh-HHHHHHcCCCE----EEECCcccc---------------c-------c
Confidence 356789999999999985 4999999986 99999999999 999976642 1 0
Q ss_pred ccCCCcccCCCccccccccccccccccCCCCCCcccccccccccCCCCCccccccccccCCCCCCHHHHHHHHHHHHHcC
Q psy9003 971 AESHDQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAG 1050 (1276)
Q Consensus 971 ~~S~~~~~WGYdp~nyf~~d~~~y~~~S~~~Dp~~~~dap~~~yas~s~hkYt~D~~~ID~~~Gt~eEfK~LV~alHk~G 1050 (1276)
........|||+|.||+ ++ ||+||+.+|||+||++||++|
T Consensus 58 ~~~~~~~~~gY~~~dy~---------------------~i-------------------~~~~Gt~~~~~~lv~~~h~~G 97 (449)
T 3dhu_A 58 VNRKGTLGSPYAIKDYR---------------------GI-------------------NPEYGTLADFKALTDRAHELG 97 (449)
T ss_dssp TTCCTTTCCTTSBSCTT---------------------SC-------------------CGGGCCHHHHHHHHHHHHHTT
T ss_pred cCCCCCCCCCcCccccc---------------------cc-------------------CcccCCHHHHHHHHHHHHHCC
Confidence 01111235789988888 44 489999999999999999999
Q ss_pred CEEEEEEeccccCCcccCCCcCCCCCCCcccccCCCCC----CCCCC-CcCCCCCcHHHHHHHHHHHHHHHHhCCCcEEc
Q psy9003 1051 LYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGT----HPLWD-SRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFR 1125 (1276)
Q Consensus 1051 I~VILDvV~NHt~~~~~~~~~~f~g~~~~Yy~~~~~g~----~~~W~-g~~LN~~np~Vr~~Iidsl~~Wv~eygVDGFR 1125 (1276)
|+||||+|+||++.++.+. ...+.||...+++. ...|. .++||+++|+||++|++++++|+++ |||||
T Consensus 98 i~vi~D~V~NH~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~w~~~~dLn~~np~Vr~~l~~~l~~w~~~--vDGfR 170 (449)
T 3dhu_A 98 MKVMLDIVYNHTSPDSVLA-----TEHPEWFYHDADGQLTNKVGDWSDVKDLDYGHHELWQYQIDTLLYWSQF--VDGYR 170 (449)
T ss_dssp CEEEEEECCSEECTTSHHH-----HHCGGGBCBCTTSCBCCSSTTCTTCEEBCTTSHHHHHHHHHHHHHHTTT--CSEEE
T ss_pred CEEEEEEccCcCcCccchh-----hcCccceEECCCCCcCCCCCCCCCCCccCCCCHHHHHHHHHHHHHHHHh--CCEEE
Confidence 9999999999999875431 11244554443332 34565 4899999999999999999999996 99999
Q ss_pred cCCccccccccCCCCCCCCCCCccccCCCCCchHHHHHHHHHHHHHhhCCCeEEEEEccCCCCCCccccccCC-------
Q psy9003 1126 FDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGG------- 1198 (1276)
Q Consensus 1126 fD~a~~L~~~d~g~g~~~~~~~~~~~~~~~d~~a~~Fl~el~~~Vr~~~PdvilIAE~~s~~p~~~~p~~~gg------- 1198 (1276)
||++.+|. ..||+++++.+++.+|+++++||.|.. .........+
T Consensus 171 lDaa~~~~--------------------------~~f~~~~~~~~~~~~p~~~~~gE~~~~--~~~~~~~~~g~~~~~~~ 222 (449)
T 3dhu_A 171 CDVAPLVP--------------------------LDFWLEARKQVNAKYPETLWLAESAGS--GFIEELRSQGYTGLSDS 222 (449)
T ss_dssp ETTGGGSC--------------------------HHHHHHHHHHHHHHSTTCEEEECCCCH--HHHHHHHHTTCCCCCHH
T ss_pred EEChhhCC--------------------------HHHHHHHHHHHHhhCCCeEEEeccCCc--hHHHHHHhcCccccccc
Confidence 99999882 459999999999999999999998753 2111111111
Q ss_pred ---cccCcccC-CCccc--hh-----h-HHHHHHHHHHHHHhcccCCCCCeeEeecCCCeEEEEE
Q psy9003 1199 ---TGFDYRLV-SLEGS--AL-----S-ALFDAAMNTTEERFKWLSADPGYVSTKHEGDKVIIFE 1251 (1276)
Q Consensus 1199 ---lGFD~~~n-~lEes--aL-----S-~~F~~~Ln~l~~~~p~L~~~~~~~l~nHD~~RVlsf~ 1251 (1276)
.+||+.|+ .+... .+ + ..+...+......+|. .....+++.|||++|+.+..
T Consensus 223 ~l~~~fd~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~fl~NHD~~R~~~~~ 286 (449)
T 3dhu_A 223 ELYQAFDMTYDYDVFGDFKDYWQGRSTVERYVDLLQRQDATFPG-NYVKMRFLENHDNARMMSLM 286 (449)
T ss_dssp HHHTTCSEEEGGGTHHHHHHHHTTSSCHHHHHHHHHHHHTTSCT-TCEEEECSCCTTSCCHHHHC
T ss_pred hhhhccCccccHHHHHHHHHHHhCCCCHHHHHHHHHHHHhhcCC-chhheeecccCCccchhhhc
Confidence 35777666 33100 00 0 3344444433323332 11123557799999987654
|
| >2guy_A Alpha-amylase A; (beta-alpha) 8 barrel, hydrolase; HET: NAG BMA; 1.59A {Aspergillus oryzae} SCOP: b.71.1.1 c.1.8.1 PDB: 2gvy_A* 3kwx_A* 6taa_A 7taa_A* 2taa_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-34 Score=340.93 Aligned_cols=258 Identities=18% Similarity=0.180 Sum_probs=179.1
Q ss_pred CCCCceEEEEecCCccccC--c------------cCcHHHHHHhhhhHHHHcCCCCCccceeecccccccccccccceee
Q psy9003 892 KPDNLKIYESHVGICTQEQ--K------------CASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHT 957 (1276)
Q Consensus 892 ~~~d~vIYElHVr~ft~~~--~------------~Gtf~gl~ek~LdyLK~LGVna~d~wV~LmP~f~~eew~~~~pi~~ 957 (1276)
.|++.+|||+|||+|+... . .|+|+|++++ |||||+||||+ |||||+++.
T Consensus 5 ~w~~~~iYqi~~~~F~~~~~~~~~~~~~~~~~~~gG~~~gi~~~-LdyL~~lGvt~----I~l~Pi~~~----------- 68 (478)
T 2guy_A 5 DWRSQSIYFLLTDRFARTDGSTTATCNTADQKYCGGTWQGIIDK-LDYIQGMGFTA----IWITPVTAQ----------- 68 (478)
T ss_dssp HHTTCCEEEECHHHHCBTTCCSSCCCCGGGTCCCCBCHHHHHHT-HHHHHTTTCCE----EEECCCEEE-----------
T ss_pred hhccCcEEEEecccccCCCCCCCCCCCCcccccCCCCHHHHHHH-HHHHHhcCCCE----EEeCCcccC-----------
Confidence 3457899999999997421 1 2999999996 99999999999 999966642
Q ss_pred ccCccccccccccccCCCcccCCCccccccccccccccccCCCCCCcccccccccccCCCCCccccccccccCCCCCCHH
Q psy9003 958 LTNRRYMEKTVAYAESHDQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPE 1037 (1276)
Q Consensus 958 l~~~Pi~E~~i~~~~S~~~~~WGYdp~nyf~~d~~~y~~~S~~~Dp~~~~dap~~~yas~s~hkYt~D~~~ID~~~Gt~e 1037 (1276)
+.. ..+....+|||++.||| +++ |+||+++
T Consensus 69 ----~~~------~~~~~~~~~GY~~~d~~---------------------~id-------------------p~~Gt~~ 98 (478)
T 2guy_A 69 ----LPQ------TTAYGDAYHGYWQQDIY---------------------SLN-------------------ENYGTAD 98 (478)
T ss_dssp ----CCC------CBTTBCCTTSCSEEEEE---------------------EEC-------------------TTSCCHH
T ss_pred ----Ccc------ccCCCCCCCCCCccccc---------------------ccC-------------------ccCCCHH
Confidence 000 00011256899988888 444 9999999
Q ss_pred HHHHHHHHHHHcCCEEEEEEeccccCCcccCCC---cCCCC-CCCcccccCC-CCCC-------CCCC------CcCCCC
Q psy9003 1038 QLKYLVDECHKAGLYVLLDVVHSHASKNVLDGL---NEFDG-TQACFFHDGP-RGTH-------PLWD------SRLFNY 1099 (1276)
Q Consensus 1038 EfK~LV~alHk~GI~VILDvV~NHt~~~~~~~~---~~f~g-~~~~Yy~~~~-~g~~-------~~W~------g~~LN~ 1099 (1276)
|||+||++||++||+||||+|+||++.++.... ..|.. ....||+... ...+ ..|. .++||+
T Consensus 99 df~~lv~~~H~~Gi~VilD~V~NH~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~g~~~~~~~dln~ 178 (478)
T 2guy_A 99 DLKALSSALHERGMYLMVDVVANHMGYDGAGSSVDYSVFKPFSSQDYFHPFCFIQNYEDQTQVEDCWLGDNTVSLPDLDT 178 (478)
T ss_dssp HHHHHHHHHHHTTCEEEEEECCSBCCEEBCGGGCCGGGSBSCCSGGGBCCSCBCCCTTCHHHHHHSBEECSSEEECBBCT
T ss_pred HHHHHHHHHHHCCCEEEEEECcccCCCCCCcccccccccCCCCchhhcCCCCcccCCCCCcccccccccCCCCCCCeeCc
Confidence 999999999999999999999999998654210 11111 1123443311 1111 1342 379999
Q ss_pred CcHHHHHHHHHHHHHHHHhCCCcEEccCCccccccccCCCCCCCCCCCccccCCCCCchHHHHHHHHHHHHHhhCCCeEE
Q psy9003 1100 SEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIIT 1179 (1276)
Q Consensus 1100 ~np~Vr~~Iidsl~~Wv~eygVDGFRfD~a~~L~~~d~g~g~~~~~~~~~~~~~~~d~~a~~Fl~el~~~Vr~~~Pdvil 1179 (1276)
++|+||++|++++++|+++|||||||||++.+|. .+||+++++. |++++
T Consensus 179 ~~~~V~~~l~~~~~~w~~~~gvDGfR~Da~~~~~--------------------------~~f~~~~~~~-----~~~~~ 227 (478)
T 2guy_A 179 TKDVVKNEWYDWVGSLVSNYSIDGLRIDTVKHVQ--------------------------KDFWPGYNKA-----AGVYC 227 (478)
T ss_dssp TSHHHHHHHHHHHHHHHHHHTCCEEEETTGGGSC--------------------------GGGHHHHHHH-----HTSEE
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCEEEEeccccCC--------------------------HHHHHHHHhc-----CCceE
Confidence 9999999999999999999999999999999883 2378888753 78999
Q ss_pred EEEccCCCCCCccccccCCcccCcccC-CCcc---chh------hHHHHHHHHHHHHHhcccCCCCCeeEeecCCCeEEE
Q psy9003 1180 IAEDVSGMPASCRPVTEGGTGFDYRLV-SLEG---SAL------SALFDAAMNTTEERFKWLSADPGYVSTKHEGDKVII 1249 (1276)
Q Consensus 1180 IAE~~s~~p~~~~p~~~gglGFD~~~n-~lEe---saL------S~~F~~~Ln~l~~~~p~L~~~~~~~l~nHD~~RVls 1249 (1276)
|||.|...+....++. .+||+.|+ .+.. .++ ...+.+.+..+...++. .....+++.|||++|+.+
T Consensus 228 igE~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~f~~nHD~~r~~~ 303 (478)
T 2guy_A 228 IGEVLDGDPAYTCPYQ---NVMDGVLNYPIYYPLLNAFKSTSGSMDDLYNMINTVKSDCPD-STLLGTFVENHDNPRFAS 303 (478)
T ss_dssp EECCCCSCHHHHGGGG---GTSSEEBCHHHHHHHHHHHSSTTCCHHHHHHHHHHHHHHSSC-GGGSEECSCCTTSCCGGG
T ss_pred EeeecCCCchhHHhhh---ccCccccCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHhhCcC-hhhceeeccCCCCccccc
Confidence 9999988776665543 23554444 1100 000 13455555555554442 112235678999999766
Q ss_pred E
Q psy9003 1250 F 1250 (1276)
Q Consensus 1250 f 1250 (1276)
.
T Consensus 304 ~ 304 (478)
T 2guy_A 304 Y 304 (478)
T ss_dssp T
T ss_pred c
Confidence 4
|
| >1lwj_A 4-alpha-glucanotransferase; alpha-amylase family, acarbose, (beta/alpha)8 barrel; HET: ACG; 2.50A {Thermotoga maritima} SCOP: b.71.1.1 c.1.8.1 PDB: 1lwh_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-35 Score=342.70 Aligned_cols=248 Identities=16% Similarity=0.213 Sum_probs=172.4
Q ss_pred ceEEEEecCCccc--cCccCcHHHHHHhhhhHHHHcCCCCCccceeecccccccccccccceeeccCccccccccccccC
Q psy9003 896 LKIYESHVGICTQ--EQKCASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAES 973 (1276)
Q Consensus 896 ~vIYElHVr~ft~--~~~~Gtf~gl~ek~LdyLK~LGVna~d~wV~LmP~f~~eew~~~~pi~~l~~~Pi~E~~i~~~~S 973 (1276)
++|||+|||+|++ ..+.|+|+|++++ |||||+||||+ |||||++ +. +
T Consensus 1 ~viYei~~~~F~~~~~~g~Gd~~gi~~~-LdyL~~LGv~~----I~L~Pi~--------------------~~--~---- 49 (441)
T 1lwj_A 1 MIGYQIYVRSFRDGNLDGVGDFRGLKNA-VSYLKELGIDF----VWLMPVF--------------------SS--I---- 49 (441)
T ss_dssp CCEEEECHHHHCCSSSSSSCCHHHHHHT-HHHHHHTTCCE----EEECCCE--------------------EC--S----
T ss_pred CeEEEEehHHhcCCCCCCccCHHHHHHh-hHHHHHcCCCE----EEeCCCc--------------------CC--C----
Confidence 5899999999985 3457999999996 99999999999 9999444 32 1
Q ss_pred CCcccCCCccccccccccccccccCCCCCCcccccccccccCCCCCccccccccccCCCCCCHHHHHHHHHHHHHcCCEE
Q psy9003 974 HDQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLYV 1053 (1276)
Q Consensus 974 ~~~~~WGYdp~nyf~~d~~~y~~~S~~~Dp~~~~dap~~~yas~s~hkYt~D~~~ID~~~Gt~eEfK~LV~alHk~GI~V 1053 (1276)
.+|||++.||+ +++ |+||+++|||+||++||++||+|
T Consensus 50 ---~~~GY~~~dy~---------------------~id-------------------p~~Gt~~df~~lv~~aH~~Gi~V 86 (441)
T 1lwj_A 50 ---SFHGYDVVDFY---------------------SFK-------------------AEYGSEREFKEMIEAFHDSGIKV 86 (441)
T ss_dssp ---SSSCCSCSEEE---------------------EEC-------------------TTTCCHHHHHHHHHHHHHTTCEE
T ss_pred ---CCCCCCccccc---------------------ccC-------------------cccCCHHHHHHHHHHHHHCCCEE
Confidence 35999999999 444 99999999999999999999999
Q ss_pred EEEEeccccCCcccCCCcCCCCCC--CcccccCC-CC---------CCCCC---------------CCcCCCCCcHHHHH
Q psy9003 1054 LLDVVHSHASKNVLDGLNEFDGTQ--ACFFHDGP-RG---------THPLW---------------DSRLFNYSEIEVLR 1106 (1276)
Q Consensus 1054 ILDvV~NHt~~~~~~~~~~f~g~~--~~Yy~~~~-~g---------~~~~W---------------~g~~LN~~np~Vr~ 1106 (1276)
|||+|+|||+.+++|+.....+.. +.||...+ .. ..+.| +.++||++||+||+
T Consensus 87 ilD~V~NH~~~~~~~f~~~~~~~~~y~d~y~~~~~~~~~~~~~~~~~~~~w~~~~~~~~y~~~f~~~~pdln~~np~V~~ 166 (441)
T 1lwj_A 87 VLDLPIHHTGFLHTWFQKALKGDPHYRDYYVWANKETDLDERREWDGEKIWHPLEDGRFYRGLFGPFSPDLNYDNPQVFD 166 (441)
T ss_dssp EEEECTTBCCTTCHHHHHHHTTCHHHHTTBCBCCTTSCTTCBCSSSCCBCEEECTTSCEEECTTCTTSCBBCSSSHHHHH
T ss_pred EEEeCCCcccCchHHHHHHhccCCCCcceeeecCCCCCCcccccCCCccccccccCCceEEcccCCCCCccCCCCHHHHH
Confidence 999999999998865432111111 23443211 10 00112 13799999999999
Q ss_pred HHHHHHHHHHHhCCCcEEccCCccccccccCCCCCCCCCCCccccCCCCCchHHHHHHHHHHHHHhhCCCeEEEEEccCC
Q psy9003 1107 FLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSG 1186 (1276)
Q Consensus 1107 ~Iidsl~~Wv~eygVDGFRfD~a~~L~~~d~g~g~~~~~~~~~~~~~~~d~~a~~Fl~el~~~Vr~~~PdvilIAE~~s~ 1186 (1276)
+|++++++|+++ ||||||||++.+|.. ...++..||+++++.+++. +|||.|..
T Consensus 167 ~l~~~~~~wl~~-gvDGfR~D~~~~i~~--------------------~~~~~~~~~~~~~~~~~~~-----~igE~~~~ 220 (441)
T 1lwj_A 167 EMKRLVLHLLDM-GVDGFRFDAAKHMRD--------------------TIEQNVRFWKYFLSDLKGI-----FLAEIWAE 220 (441)
T ss_dssp HHHHHHHHHHTT-TCCEEEETTGGGSSS--------------------SHHHHHHHHHHHTTTCCSE-----EEECCCSC
T ss_pred HHHHHHHHHHhC-CCCEEEEeChhhhcc--------------------CCccHHHHHHHHHHHhHhh-----EEEccCCC
Confidence 999999999998 999999999998830 1234678999998766443 99999873
Q ss_pred CCCCccccccCCcccCcccC-CCccc---hh----hHHHHHHHHHHHHHhcccCCCCCeeEeecCCCeEEEE
Q psy9003 1187 MPASCRPVTEGGTGFDYRLV-SLEGS---AL----SALFDAAMNTTEERFKWLSADPGYVSTKHEGDKVIIF 1250 (1276)
Q Consensus 1187 ~p~~~~p~~~gglGFD~~~n-~lEes---aL----S~~F~~~Ln~l~~~~p~L~~~~~~~l~nHD~~RVlsf 1250 (1276)
+....++.. |||+.|+ .+... ++ ...+.+.+.++.. +. .....+++.|||++|+.+.
T Consensus 221 -~~~~~~y~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~-~~~~~~fl~nHD~~R~~~~ 285 (441)
T 1lwj_A 221 -ARMVDEHGR---IFGYMLNFDTSHCIKEAVWKENTRVLIESIERAVI--AK-DYLPVNFTSNHDMSRLASF 285 (441)
T ss_dssp -HHHHHHHHH---HHSEEECHHHHHHHHHHHHTTCSHHHHHHHHHHTS--SC-SSEEEEESCCTTSCCGGGT
T ss_pred -HHHHHHHHH---hCCEeEehHHHHHHHHhhccCCHHHHHHHHHHHhc--cC-CCceeeeccCCCCCCcccc
Confidence 433333221 5666665 22100 00 0233333333322 10 1122356789999998663
|
| >3zss_A Putative glucanohydrolase PEP1A; alpha-glucan biosynthesis, glycoside hydrolase FA; 1.80A {Streptomyces coelicolor} PDB: 3zst_A* 3zt5_A* 3zt6_A* 3zt7_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-33 Score=342.09 Aligned_cols=282 Identities=16% Similarity=0.149 Sum_probs=201.3
Q ss_pred CCceEEEEecCCccc-cCccCcHHHHHHhhhhHHHHcCCCCCccceeecccccccccccccceeeccCcccccccccccc
Q psy9003 894 DNLKIYESHVGICTQ-EQKCASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAE 972 (1276)
Q Consensus 894 ~d~vIYElHVr~ft~-~~~~Gtf~gl~ek~LdyLK~LGVna~d~wV~LmP~f~~eew~~~~pi~~l~~~Pi~E~~i~~~~ 972 (1276)
...+|||+|+|+|+. .+..|+|+|++++ |||||+||||+ |||||+++...
T Consensus 230 ~~~~iYEi~~rsf~~~~~~~Gd~~gi~~~-LdyLk~LGvt~----I~L~Pi~~~~~------------------------ 280 (695)
T 3zss_A 230 LYGAWYEFFPRSEGTPHTPHGTFRTAARR-LPAIAAMGFDV----VYLPPIHPIGT------------------------ 280 (695)
T ss_dssp HCEEEEECCGGGSCCSSCCSCCHHHHGGG-HHHHHHTTCCE----EEECCCSCBCC------------------------
T ss_pred ccceEEEEehhHhcCCCCCCCCHHHHHHH-HHHHHhCCCCE----EEECCcccCCc------------------------
Confidence 467999999999985 3348999999986 99999999999 99996664210
Q ss_pred CCCcccCCCccccccccccccccccCCCCCCcccccccccccCCCCCccc-cccccccCCCCCCHHHHHHHHHHHHHcCC
Q psy9003 973 SHDQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKY-LVDECHKAGLFGTPEQLKYLVDECHKAGL 1051 (1276)
Q Consensus 973 S~~~~~WGYdp~nyf~~d~~~y~~~S~~~Dp~~~~dap~~~yas~s~hkY-t~D~~~ID~~~Gt~eEfK~LV~alHk~GI 1051 (1276)
+.+|.+.+.... ..+..+| | |+. .+ +.||+.|||+||+.+|||+||++||++||
T Consensus 281 -----~~~~g~~n~~~~--~~~d~Gs----p----------Y~i----~d~~~~y~~idp~~Gt~edfk~LV~~aH~~GI 335 (695)
T 3zss_A 281 -----THRKGRNNTLSA--TGDDVGV----P----------WAI----GSPEGGHDSIHPALGTLDDFDHFVTEAGKLGL 335 (695)
T ss_dssp -----TTCCCGGGCSSC--CTTCCCC----T----------TSB----CBTTBCTTSCCTTTCCHHHHHHHHHHHHHTTC
T ss_pred -----cccccccccccc--cccCCCC----c----------ccc----cCCCCCccccCcccCCHHHHHHHHHHHHHCCC
Confidence 012222121100 0000000 0 100 01 12477888999999999999999999999
Q ss_pred EEEEEEeccccCCcccCCCcCCCCCCCcccccCCCCCC-------CCCC-CcCCCCCc--HHHHHHHHHHHHHHHHhCCC
Q psy9003 1052 YVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTH-------PLWD-SRLFNYSE--IEVLRFLLSNLRWYLDEYQF 1121 (1276)
Q Consensus 1052 ~VILDvV~NHt~~~~~~~~~~f~g~~~~Yy~~~~~g~~-------~~W~-g~~LN~~n--p~Vr~~Iidsl~~Wv~eygV 1121 (1276)
+||||+|+|| +.+++|.. ..+.||...++|.. ..|. ..+||+.+ |+|+++|+++++||++ +||
T Consensus 336 ~VilD~V~Nh-s~~~~~~~-----~~~dwf~~~~dg~~~~~~~~~~~~~~~~dLn~~n~~p~V~~~l~~~l~~Wi~-~GV 408 (695)
T 3zss_A 336 EIALDFALQC-SPDHPWVH-----KHPEWFHHRPDGTIAHAENPPKKYQDIYPIAFDADPDGLATETVRILRHWMD-HGV 408 (695)
T ss_dssp EEEEEECCEE-CTTSTHHH-----HCGGGSCCCTTSCCCCEEETTEEETTCEECCCSSCHHHHHHHHHHHHHHHHH-TTC
T ss_pred EEEEEeeccC-Cccchhhh-----cccceeeecCCCCcccCCCCCccccccccccccCCcHHHHHHHHHHHHHHHH-hCC
Confidence 9999999998 44444421 12566665544432 1232 25699999 9999999999999998 999
Q ss_pred cEEccCCccccccccCCCCCCCCCCCccccCCCCCchHHHHHHHHHHHHHhhCCCeEEEEEccCCCCCCccccccCCccc
Q psy9003 1122 DGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGF 1201 (1276)
Q Consensus 1122 DGFRfD~a~~L~~~d~g~g~~~~~~~~~~~~~~~d~~a~~Fl~el~~~Vr~~~PdvilIAE~~s~~p~~~~p~~~gglGF 1201 (1276)
||||||++..+ +..||+++++.+++.+|++++|||.|. .|.....+. +.||
T Consensus 409 DGfRlD~a~~~--------------------------~~~f~~~~~~~v~~~~pd~~~vgE~~~-~p~~~~~l~--~~gf 459 (695)
T 3zss_A 409 RIFRVDNPHTK--------------------------PVAFWERVIADINGTDPDVIFLAEAFT-RPAMMATLA--QIGF 459 (695)
T ss_dssp CEEEESSGGGS--------------------------CHHHHHHHHHHHHHHCTTCEEEECCCS-CHHHHHHHH--HTTC
T ss_pred CEEEecCcchh--------------------------hHHHHHHHHHHHHhhCCCceEEEeecC-ChHHhhhhh--ccCc
Confidence 99999998765 256999999999999999999999985 343322222 3456
Q ss_pred CcccCCC---------c--------------------cc--------------------hh-------------------
Q psy9003 1202 DYRLVSL---------E--------------------GS--------------------AL------------------- 1213 (1276)
Q Consensus 1202 D~~~n~l---------E--------------------es--------------------aL------------------- 1213 (1276)
++.|+.+ + ++ ++
T Consensus 460 d~~~~y~~~~~~~~~l~~~~~~l~~~~~~~~~~~~FvdNHD~~R~~s~~g~~~~~kla~all~tl~GiP~IYyGdE~G~~ 539 (695)
T 3zss_A 460 QQSYTYFTWRNTKQELTEYLTELSGEAASYMRPNFFANTPDILHAYLQHGGRPAFEVRAVLAATLSPTWGIYSGYELCEN 539 (695)
T ss_dssp SEEECSGGGCCSHHHHHHHHHHHTTGGGGTCCEEEESCBTTBCCHHHHHHCHHHHHHHHHHHHHHCSEEEEETTGGGTCC
T ss_pred CceechhhhhcchhHHHHHHHhhhhhhhhcccceecccCCCccchhcccchHHHHHHHHHHHHhcCCCcEEEcCeecccc
Confidence 5544411 0 00 00
Q ss_pred --------------------------------hHHHHHHHHHHHHHhcccCCCCCeeEeecCCCeEEEEEc----CcEEE
Q psy9003 1214 --------------------------------SALFDAAMNTTEERFKWLSADPGYVSTKHEGDKVIIFER----AGLLF 1257 (1276)
Q Consensus 1214 --------------------------------S~~F~~~Ln~l~~~~p~L~~~~~~~l~nHD~~RVlsf~R----~~ll~ 1257 (1276)
-.+|.+.|+++|+++|+|+.+..+.+...+.+.|++|.| +.++|
T Consensus 540 g~~dp~~~ey~d~e~~~r~p~~W~~~~~~~~~l~~~ik~Li~LRk~~paL~~g~~~~~~~~~~~~vlaf~R~~~~~~vlV 619 (695)
T 3zss_A 540 TPLREGSEEYLDSEKYQLKPRDWTRAAREGTTIAPLVTRLNTIRRENPALRQLRDLHFHPTDKEEVIAYSKRQGSNTVLV 619 (695)
T ss_dssp CBSSTTCCSBTTCTTSSCCCCCHHHHHHHTCSCHHHHHHHHHHHHHCGGGGCSSCCEECCBSCTTEEEEEEEETTEEEEE
T ss_pred CCCCCCccccccccccccCCCCccccccccchHHHHHHHHHHHHHhCHHhcCCCcEEEEEcCCCcEEEEEEEcCCCEEEE
Confidence 046889999999999999877666666677899999999 46999
Q ss_pred EEeCCCCC
Q psy9003 1258 AFNFNGTQ 1265 (1276)
Q Consensus 1258 v~N~~~~~ 1265 (1276)
++|+++.+
T Consensus 620 viN~s~~~ 627 (695)
T 3zss_A 620 VVNLDPRH 627 (695)
T ss_dssp EEECCSSS
T ss_pred EEECCCCC
Confidence 99999863
|
| >3bmv_A Cyclomaltodextrin glucanotransferase; glycosidase, thermostable, family 13 glycosyl hydrolas; 1.60A {Thermoanaerobacterium thermosulfurigenorganism_taxid} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 PDB: 3bmw_A* 1ciu_A 1a47_A 1pj9_A* 1cgt_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-33 Score=343.95 Aligned_cols=264 Identities=16% Similarity=0.227 Sum_probs=182.5
Q ss_pred CCCCceEEEEecCCccccCc--------------------cCcHHHHHHhhhh--HHHHcCCCCCccceeeccccccccc
Q psy9003 892 KPDNLKIYESHVGICTQEQK--------------------CASYEDFVRVVIP--RIVKQGMAIPDKWIELLKKFKDEDW 949 (1276)
Q Consensus 892 ~~~d~vIYElHVr~ft~~~~--------------------~Gtf~gl~ek~Ld--yLK~LGVna~d~wV~LmP~f~~eew 949 (1276)
.+++++|||+|||+|+.... .|+|+|++++ || |||+||||+ |||||+|+...-
T Consensus 11 ~~~~~viYqi~~~~F~d~~~~n~~~~~~~dg~~~~~~~~~gGdl~gi~~k-Ld~~yLk~LGvta----IwL~Pi~~~~~~ 85 (683)
T 3bmv_A 11 NYSTDVIYQIVTDRFVDGNTSNNPTGDLYDPTHTSLKKYFGGDWQGIINK-INDGYLTGMGVTA----IWIPQPVENIYA 85 (683)
T ss_dssp CCTTCCEEECCGGGTCCCCGGGSCCGGGBCTTSCSTTSBCCCCHHHHHHH-HHTSTTGGGTCCE----EEECCCEEECCC
T ss_pred CCccCcEEEEecccccCCCCCCCCCCcccCCCccccccccCcCHHHHHHh-cCHHHHHHcCCCE----EEeCccccCccc
Confidence 46799999999999975211 3999999996 99 999999999 999977753110
Q ss_pred ccccceeeccCccccccccccccCCCcccCCCccccccccccccccccCCCCCCcccccccccccCCCCCcccccccccc
Q psy9003 950 NMGNIVHTLTNRRYMEKTVAYAESHDQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHK 1029 (1276)
Q Consensus 950 ~~~~pi~~l~~~Pi~E~~i~~~~S~~~~~WGYdp~nyf~~d~~~y~~~S~~~Dp~~~~dap~~~yas~s~hkYt~D~~~I 1029 (1276)
|..+. +..+ ...+|||++.||| +++
T Consensus 86 ------------~~~~~--g~~g--~~~~~GYd~~dy~---------------------~id------------------ 110 (683)
T 3bmv_A 86 ------------VLPDS--TFGG--STSYHGYWARDFK---------------------RTN------------------ 110 (683)
T ss_dssp ------------CEEET--TTEE--ECSTTSCSEEEEE---------------------EEC------------------
T ss_pred ------------ccccc--cccC--CCCCCCcCccccc---------------------ccC------------------
Confidence 11000 0001 1357999999888 444
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCEEEEEEeccccCCcccCCCcC------C-CC--------CCCcccccCCCCCCCCCC-
Q psy9003 1030 AGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNE------F-DG--------TQACFFHDGPRGTHPLWD- 1093 (1276)
Q Consensus 1030 D~~~Gt~eEfK~LV~alHk~GI~VILDvV~NHt~~~~~~~~~~------f-~g--------~~~~Yy~~~~~g~~~~W~- 1093 (1276)
|+||+.+|||+||++||++||+||||+|+||++..+.++... + ++ ..+.||+.... .+|+
T Consensus 111 -p~~Gt~~dfk~Lv~~aH~~GikVilD~V~NHts~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~---~~w~~ 186 (683)
T 3bmv_A 111 -PYFGSFTDFQNLINTAHAHNIKVIIDFAPNHTSPASETDPTYAENGRLYDNGTLLGGYTNDTNGYFHHYGG---TDFSS 186 (683)
T ss_dssp -TTTCCHHHHHHHHHHHHHTTCEEEEEECTTEEEECCSSCTTSTTTTCEEETTEEEECSTTCTTCCBCCSCB---CCCSS
T ss_pred -cccCCHHHHHHHHHHHHHCCCEEEEEEcccccccccccCcchhccCccccCCcccccCCCCcccccccCCC---CCcCC
Confidence 999999999999999999999999999999999876322100 0 00 11245543221 2332
Q ss_pred -----------CcCCCCCcHHHHHHHHHHHHHHHHhCCCcEEccCCccccccccCCCCCCCCCCCccccCCCCCchHHHH
Q psy9003 1094 -----------SRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIY 1162 (1276)
Q Consensus 1094 -----------g~~LN~~np~Vr~~Iidsl~~Wv~eygVDGFRfD~a~~L~~~d~g~g~~~~~~~~~~~~~~~d~~a~~F 1162 (1276)
.++||++||+||++|+++++||++ +||||||||++.+|. ..|
T Consensus 187 ~~~~~y~~~~~~pdLn~~np~Vr~~i~~~l~~Wl~-~GVDGfRlDa~~~i~--------------------------~~f 239 (683)
T 3bmv_A 187 YEDGIYRNLFDLADLNQQNSTIDSYLKSAIKVWLD-MGIDGIRLDAVKHMP--------------------------FGW 239 (683)
T ss_dssp HHHHHHSBSTTEEEBCTTSHHHHHHHHHHHHHHHH-TTCCEEEESCGGGSC--------------------------HHH
T ss_pred cccccccCcCCCCCcccCCHHHHHHHHHHHHHHHh-CCCCEEEEeccccCC--------------------------HHH
Confidence 479999999999999999999999 999999999999882 248
Q ss_pred HHHHHHHHHhhCCCeEEEEEccCCCCCCcccc----ccCC-cccCcccC-CC----ccchh-hHHHHHHHHHHHHHhccc
Q psy9003 1163 LMVANKFLHDKYPEIITIAEDVSGMPASCRPV----TEGG-TGFDYRLV-SL----EGSAL-SALFDAAMNTTEERFKWL 1231 (1276)
Q Consensus 1163 l~el~~~Vr~~~PdvilIAE~~s~~p~~~~p~----~~gg-lGFD~~~n-~l----EesaL-S~~F~~~Ln~l~~~~p~L 1231 (1276)
|+++++.+++..| +++|||.|...+...... ..++ ..|||.+. .+ ..... ..+|.+.+..+...++.
T Consensus 240 ~~~~~~~v~~~~~-~~~vgE~~~~~~~~~~~~~~~~~~~~~~~~df~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~- 317 (683)
T 3bmv_A 240 QKNFMDSILSYRP-VFTFGEWFLGTNEIDVNNTYFANESGMSLLDFRFSQKVRQVFRDNTDTMYGLDSMIQSTASDYNF- 317 (683)
T ss_dssp HHHHHHHHHHHSC-CEEEECCCCCTTCCCHHHHHHHHHSSSEEBCHHHHHHHHHHHTSCSSCHHHHHHHHHHHHHHCTT-
T ss_pred HHHHHHHHHhcCC-ceEEccccCCCcccchhhhhhhccCCCceECchHHHHHHHHHhcCCCCHHHHHHHHHHHHHhccc-
Confidence 9999999988765 999999887644321111 1122 12555433 11 00000 14566666666555542
Q ss_pred CCCCCeeEeecCCCeEE
Q psy9003 1232 SADPGYVSTKHEGDKVI 1248 (1276)
Q Consensus 1232 ~~~~~~~l~nHD~~RVl 1248 (1276)
.....+++.|||++|+.
T Consensus 318 ~~~~~~fl~NHD~~R~~ 334 (683)
T 3bmv_A 318 INDMVTFIDNHDMDRFY 334 (683)
T ss_dssp GGGCEECSCCSSSCCSC
T ss_pred hhhceeeccCCCCcccc
Confidence 22344678899999976
|
| >1d3c_A Cyclodextrin glycosyltransferase; alpha-amylase, product complex, oligosaccharide, family 13 glycosyl hydrolase, transglycosylation; HET: GLC; 1.78A {Bacillus circulans} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 PDB: 1cxf_A* 1cxk_A* 1cdg_A* 1cxe_A* 1cxh_A* 1cxi_A* 2cxg_A* 1cgv_A* 2dij_A* 1cgy_A* 1kck_A* 1cgx_A* 1cxl_A* 1cgw_A* 1tcm_A 1kcl_A* 1eo5_A* 1eo7_A* 1dtu_A* 1ot1_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-33 Score=345.10 Aligned_cols=264 Identities=15% Similarity=0.203 Sum_probs=182.3
Q ss_pred CCCCceEEEEecCCccccCc--------------------cCcHHHHHHhhhh--HHHHcCCCCCccceeeccccccccc
Q psy9003 892 KPDNLKIYESHVGICTQEQK--------------------CASYEDFVRVVIP--RIVKQGMAIPDKWIELLKKFKDEDW 949 (1276)
Q Consensus 892 ~~~d~vIYElHVr~ft~~~~--------------------~Gtf~gl~ek~Ld--yLK~LGVna~d~wV~LmP~f~~eew 949 (1276)
.|++++|||+|||+|+.... .|+|+|++++ || |||+||||+ |||||+|+...-
T Consensus 11 ~~~~~viYqi~~~~F~d~~~~n~~~~~~~dg~~~~~~~~~gGdl~gi~~k-Ld~~yLk~LGvt~----IwL~Pi~~~~~~ 85 (686)
T 1d3c_A 11 NFSTDVIYQIFTDRFSDGNPANNPTGAAFDGTCTNLRLYCGGDWQGIINK-INDGYLTGMGVTA----IWISQPVENIYS 85 (686)
T ss_dssp CCTTCCEEEECGGGTCCSCGGGCCCGGGBCTTCCSTTSBCCCCHHHHHHH-HHTTTTGGGTCCE----EEECCCEEECCC
T ss_pred CCccCcEEEEecccccCCCCCcCCCCcccCCCccccccccCcCHHHHHHh-cCHHHHHhcCCCE----EEeCCcccCCcc
Confidence 45789999999999975211 2999999996 99 999999999 999977653100
Q ss_pred ccccceeeccCccccccccccccCCCcccCCCccccccccccccccccCCCCCCcccccccccccCCCCCcccccccccc
Q psy9003 950 NMGNIVHTLTNRRYMEKTVAYAESHDQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHK 1029 (1276)
Q Consensus 950 ~~~~pi~~l~~~Pi~E~~i~~~~S~~~~~WGYdp~nyf~~d~~~y~~~S~~~Dp~~~~dap~~~yas~s~hkYt~D~~~I 1029 (1276)
|..+ .+.....+|||++.||| +++
T Consensus 86 ------------~~~~-----~g~~~~~~~GYd~~dy~---------------------~id------------------ 109 (686)
T 1d3c_A 86 ------------IINY-----SGVNNTAYHGYWARDFK---------------------KTN------------------ 109 (686)
T ss_dssp ------------CEES-----SSCEECCTTSCSEEEEE---------------------EEC------------------
T ss_pred ------------cccc-----cCccCCCCCCCCccccc---------------------ccC------------------
Confidence 1100 01001356999999888 444
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCEEEEEEeccccCCcccCCCcC------C-C--------CCCCcccccCCCCCCCCCC-
Q psy9003 1030 AGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNE------F-D--------GTQACFFHDGPRGTHPLWD- 1093 (1276)
Q Consensus 1030 D~~~Gt~eEfK~LV~alHk~GI~VILDvV~NHt~~~~~~~~~~------f-~--------g~~~~Yy~~~~~g~~~~W~- 1093 (1276)
|+||+++|||+||++||++||+||||+|+||++..+..+... | + ...+.||+.... .+|+
T Consensus 110 -p~~Gt~~dfk~Lv~~aH~~GI~VilD~V~NHts~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~---~~~~~ 185 (686)
T 1d3c_A 110 -PAYGTIADFQNLIAAAHAKNIKVIIDFAPNHTSPASSDQPSFAENGRLYDNGTLLGGYTNDTQNLFHHNGG---TDFST 185 (686)
T ss_dssp -TTTCCHHHHHHHHHHHHHTTCEEEEEECTTEEEECCSSCTTSTTTTCEEETTEEEECSTTCTTCCBCCSCB---CCSSS
T ss_pred -cccCCHHHHHHHHHHHHHCCCEEEEEeCcCccccccccccchhhcCccccCCcccccCCCCccCceecCCC---CCcCC
Confidence 999999999999999999999999999999999876322100 0 0 011245543221 2343
Q ss_pred -----------CcCCCCCcHHHHHHHHHHHHHHHHhCCCcEEccCCccccccccCCCCCCCCCCCccccCCCCCchHHHH
Q psy9003 1094 -----------SRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIY 1162 (1276)
Q Consensus 1094 -----------g~~LN~~np~Vr~~Iidsl~~Wv~eygVDGFRfD~a~~L~~~d~g~g~~~~~~~~~~~~~~~d~~a~~F 1162 (1276)
.++||++||+||++|+++++||++ +||||||||++.+|. ..|
T Consensus 186 ~~~~~y~~~~~~pDLn~~np~Vr~~i~~~l~~Wl~-~GVDGfRlDa~~~i~--------------------------~~f 238 (686)
T 1d3c_A 186 TENGIYKNLYDLADLNHNNSTVDVYLKDAIKMWLD-LGIDGIRMNAVKHMP--------------------------FGW 238 (686)
T ss_dssp HHHHHHSBBTTEEEBCTTSHHHHHHHHHHHHHHHH-TTCCEEEETTGGGSC--------------------------HHH
T ss_pred CccccccCcCCCCCcccCCHHHHHHHHHHHHHHHh-CCCCEEEEeccccCC--------------------------HHH
Confidence 369999999999999999999999 999999999999882 248
Q ss_pred HHHHHHHHHhhCCCeEEEEEccCCCCCCcccc----ccCC-cccCcccC-CCc----cchh-hHHHHHHHHHHHHHhccc
Q psy9003 1163 LMVANKFLHDKYPEIITIAEDVSGMPASCRPV----TEGG-TGFDYRLV-SLE----GSAL-SALFDAAMNTTEERFKWL 1231 (1276)
Q Consensus 1163 l~el~~~Vr~~~PdvilIAE~~s~~p~~~~p~----~~gg-lGFD~~~n-~lE----esaL-S~~F~~~Ln~l~~~~p~L 1231 (1276)
|+++++.+++..| +++|||.|.+........ ..++ ..|||.+. .+. .... ..+|.+.+..+...++.
T Consensus 239 ~~~~~~~v~~~~~-~~~vgE~~~~~~~~~~~~~~~~~~~~~~~~df~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~- 316 (686)
T 1d3c_A 239 QKSFMAAVNNYKP-VFTFGQWFLGVNEVSPENHKFANESGMSLLDFRFAQKVRQVFRDNTDNMYGLKAMLEGSAADYAQ- 316 (686)
T ss_dssp HHHHHHHHHTTSC-CEEEECCCCCTTCCCHHHHHHHHHSSSEEBCHHHHHHHHHHHTTCSSCHHHHHHHHHHHHHHCTT-
T ss_pred HHHHHHHHHhcCC-ceEEeccccCCcccchhhhhhhccCCCceeCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccc-
Confidence 9999999988766 999999886533221111 0112 23555443 110 0000 14556666655554542
Q ss_pred CCCCCeeEeecCCCeEEE
Q psy9003 1232 SADPGYVSTKHEGDKVII 1249 (1276)
Q Consensus 1232 ~~~~~~~l~nHD~~RVls 1249 (1276)
.....+++.|||++|+.+
T Consensus 317 ~~~~~~fl~nHD~~R~~~ 334 (686)
T 1d3c_A 317 VDDQVTFIDNHDMERFHA 334 (686)
T ss_dssp GGGCEECSCCTTSCCSSC
T ss_pred cccceeeccCCCcccccc
Confidence 123346778999999876
|
| >1qho_A Alpha-amylase; glycoside hydrolase, starch degradation; HET: MAL ABD; 1.70A {Geobacillus stearothermophilus} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 PDB: 1qhp_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-33 Score=341.75 Aligned_cols=265 Identities=16% Similarity=0.207 Sum_probs=183.4
Q ss_pred CCCCCCceEEEEecCCccccCc-----------------------cCcHHHHHHhhhhHHHHcCCCCCccceeecccccc
Q psy9003 890 PKKPDNLKIYESHVGICTQEQK-----------------------CASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKD 946 (1276)
Q Consensus 890 p~~~~d~vIYElHVr~ft~~~~-----------------------~Gtf~gl~ek~LdyLK~LGVna~d~wV~LmP~f~~ 946 (1276)
|+.+++++|||+++|+|..... .|+|+|++++ |||||+||||+ |||+|+|+.
T Consensus 3 ~~~~~~~viYqI~p~~F~d~d~~n~~~~~~~~~~d~~~~~~~~~~gGdl~gi~~k-LdyLk~LGv~a----IwL~Pi~~~ 77 (686)
T 1qho_A 3 SASVKGDVIYQIIIDRFYDGDTTNNNPAKSYGLYDPTKSKWKMYWGGDLEGVRQK-LPYLKQLGVTT----IWLSPVLDN 77 (686)
T ss_dssp TSCCTTCCEEEECGGGTCCSCGGGSSCGGGTTCBCTTSCSTTSBCCCCHHHHHHT-HHHHHHHTCCE----EEECCCEEE
T ss_pred cccCccCcEEEEeccccCCCCcccCcccccccccCCCccccccccCCCHHHHHHh-hHHHHhcCCCE----EEECccccC
Confidence 3456799999999999974211 3999999997 99999999999 999976642
Q ss_pred cccccccceeeccCccccccccccccCCCcccCCCccccccccccccccccCCCCCCcccccccccccCCCCCccccccc
Q psy9003 947 EDWNMGNIVHTLTNRRYMEKTVAYAESHDQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDE 1026 (1276)
Q Consensus 947 eew~~~~pi~~l~~~Pi~E~~i~~~~S~~~~~WGYdp~nyf~~d~~~y~~~S~~~Dp~~~~dap~~~yas~s~hkYt~D~ 1026 (1276)
.. .|. . .+ ...+|||++.||+ +++
T Consensus 78 ~~------------~~~-~-----~g--~~~~~GYd~~Dy~---------------------~id--------------- 101 (686)
T 1qho_A 78 LD------------TLA-G-----TD--NTGYHGYWTRDFK---------------------QIE--------------- 101 (686)
T ss_dssp CS------------SCS-S-----TT--CCCTTSCSEEEEE---------------------EEC---------------
T ss_pred Cc------------ccc-c-----CC--CCCcCCcCccccc---------------------ccC---------------
Confidence 00 010 0 01 1356899998888 444
Q ss_pred cccCCCCCCHHHHHHHHHHHHHcCCEEEEEEeccccCCcccCCCc------CC-CC--------CC-CcccccCCCCCCC
Q psy9003 1027 CHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLN------EF-DG--------TQ-ACFFHDGPRGTHP 1090 (1276)
Q Consensus 1027 ~~ID~~~Gt~eEfK~LV~alHk~GI~VILDvV~NHt~~~~~~~~~------~f-~g--------~~-~~Yy~~~~~g~~~ 1090 (1276)
|+||+++|||+||++||++||+||||+|+||++..+.+... .+ ++ .. +.||+.... ..
T Consensus 102 ----p~~Gt~~df~~Lv~~aH~~GikVilD~V~NHts~~~~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~f~~~~~--i~ 175 (686)
T 1qho_A 102 ----EHFGNWTTFDTLVNDAHQNGIKVIVDFVPNHSTPFKANDSTFAEGGALYNNGTYMGNYFDDATKGYFHHNGD--IS 175 (686)
T ss_dssp ----TTTCCHHHHHHHHHHHHHTTCEEEEEECTTEEEEEBTTBTTSTTTTCEEETTEEEECSSSCTTTCCBCCSCB--CS
T ss_pred ----cccCCHHHHHHHHHHHHHCCCEEEEEeccccccccccccccccccCccccCCcccccCCCCcccCeeecCCC--cC
Confidence 99999999999999999999999999999999987632210 00 01 01 345543221 12
Q ss_pred CC-----------------CCcCCCCCcHHHHHHHHHHHHHHHHhCCCcEEccCCccccccccCCCCCCCCCCCccccCC
Q psy9003 1091 LW-----------------DSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGL 1153 (1276)
Q Consensus 1091 ~W-----------------~g~~LN~~np~Vr~~Iidsl~~Wv~eygVDGFRfD~a~~L~~~d~g~g~~~~~~~~~~~~~ 1153 (1276)
+| +.++||++||+||++|+++++||++ +||||||||++.+|.
T Consensus 176 ~w~~~~~~~y~~~~~~~~~~~pDLn~~np~Vr~~l~~~~~~Wl~-~GVDGfRlDa~~~i~-------------------- 234 (686)
T 1qho_A 176 NWDDRYEAQWKNFTDPAGFSLADLSQENGTIAQYLTDAAVQLVA-HGADGLRIDAVKHFN-------------------- 234 (686)
T ss_dssp CTTCHHHHHHSBCEETTTEEEEEBCTTSHHHHHHHHHHHHHHHH-TTCCEEEETTGGGSC--------------------
T ss_pred cCCCCcccceeecccCCcCCCCccccCCHHHHHHHHHHHHHHHh-cCCCEEEEeccccCC--------------------
Confidence 23 2478999999999999999999999 999999999999882
Q ss_pred CCCchHHHHHHHHHHHHHhhCCCeEEEEEccCCC-CCCc-----cccccCC-cccCcccC-CCc----cchh-hHHHHHH
Q psy9003 1154 NVDTDALIYLMVANKFLHDKYPEIITIAEDVSGM-PASC-----RPVTEGG-TGFDYRLV-SLE----GSAL-SALFDAA 1220 (1276)
Q Consensus 1154 ~~d~~a~~Fl~el~~~Vr~~~PdvilIAE~~s~~-p~~~-----~p~~~gg-lGFD~~~n-~lE----esaL-S~~F~~~ 1220 (1276)
..||+++++.+++.+| +++|||.|.+. +... .....++ ..|||.+. .+. .... ..+|.+.
T Consensus 235 ------~~f~~~~~~~v~~~~~-~~~vgE~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~~~~~~~~~~~~~~~~~l~~~ 307 (686)
T 1qho_A 235 ------SGFSKSLADKLYQKKD-IFLVGEWYGDDPGTANHLEKVRYANNSGVNVLDFDLNTVIRNVFGTFTQTMYDLNNM 307 (686)
T ss_dssp ------HHHHHHHHHHHHHHCC-CEEEECCCCCCTTSTTHHHHHHHHHHSSCEEBCHHHHHHHHHHHTSCSSCHHHHHHH
T ss_pred ------HHHHHHHHHHHHhcCC-ceEEeeeecCCCcccchhhhhhhcccCCCeeeccHHHHHHHHHHhcCCCCHHHHHHH
Confidence 2489999999988865 99999988664 2211 0011122 23555443 110 0000 1456666
Q ss_pred HHHHHHHhcccCCCCCeeEeecCCCeEEEE
Q psy9003 1221 MNTTEERFKWLSADPGYVSTKHEGDKVIIF 1250 (1276)
Q Consensus 1221 Ln~l~~~~p~L~~~~~~~l~nHD~~RVlsf 1250 (1276)
+..+...++. ..+..+++.|||++|+.++
T Consensus 308 l~~~~~~~~~-~~~~~~fl~NHD~~R~~s~ 336 (686)
T 1qho_A 308 VNQTGNEYKY-KENLITFIDNHDMSRFLSV 336 (686)
T ss_dssp HHHHHHHCTT-GGGCEECSCCTTSCCHHHH
T ss_pred HHHHHHhccc-hhhceeeccCCCCcccccc
Confidence 6666555542 2234467889999998773
|
| >3k8k_A Alpha-amylase, SUSG; alpha8/BETA8 barrel, CBM, beta-sandwich, membrane protein; 2.20A {Bacteroides thetaiotaomicron} PDB: 3k8m_A* 3k8l_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=4.9e-33 Score=341.82 Aligned_cols=260 Identities=14% Similarity=0.184 Sum_probs=186.4
Q ss_pred CCceEEEEecCCccc--cCccCcHHHHHHhhhhHHHHcCCCCCccceeecccccccccccccceeeccCccccccccccc
Q psy9003 894 DNLKIYESHVGICTQ--EQKCASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYA 971 (1276)
Q Consensus 894 ~d~vIYElHVr~ft~--~~~~Gtf~gl~ek~LdyLK~LGVna~d~wV~LmP~f~~eew~~~~pi~~l~~~Pi~E~~i~~~ 971 (1276)
++++|||+|+|+|+. ....|+|+|++++ ||||++||||+ |||+|+|+ .
T Consensus 36 ~~~viY~i~~~~f~~~~~~~~G~~~g~~~~-l~yl~~lGv~~----i~l~Pi~~--------------------~----- 85 (669)
T 3k8k_A 36 RADISYQLLLYSFADSDGDGYGDLNGVTQK-LDYLNQLGVKA----LWLSPIHP--------------------C----- 85 (669)
T ss_dssp CSCCEEEECTTTSCCSSSSSSCCHHHHHTT-HHHHHTTTCSE----EEECCCSS--------------------B-----
T ss_pred cCcEEEEEEhHHhcCCCCCCCcCHHHHHHH-HHHHHHcCCCE----EEeccccc--------------------C-----
Confidence 469999999999975 4568999999996 99999999999 99995442 2
Q ss_pred cCCCcccCCCccccccccccccccccCCCCCCcccccccccccCCCCCccccccccccCCCCCCHHHHHHHHHHHHHcCC
Q psy9003 972 ESHDQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGL 1051 (1276)
Q Consensus 972 ~S~~~~~WGYdp~nyf~~d~~~y~~~S~~~Dp~~~~dap~~~yas~s~hkYt~D~~~ID~~~Gt~eEfK~LV~alHk~GI 1051 (1276)
..+|||++.+|+ +++ |+||++++|++||++||++||
T Consensus 86 ----~~~~gY~~~dy~---------------------~i~-------------------~~~Gt~~d~~~lv~~~h~~gi 121 (669)
T 3k8k_A 86 ----MSYHGYDVTDYT---------------------KVN-------------------PQLGTESDFDRLVTEAHNRGI 121 (669)
T ss_dssp ----SSTTCCSBSCTT---------------------SCC-------------------TTTCCHHHHHHHHHHHHHTTC
T ss_pred ----CCCCCCCccccc---------------------ccc-------------------cccCCHHHHHHHHHHHHHcCC
Confidence 124899999999 444 899999999999999999999
Q ss_pred EEEEEEeccccCCcccCCCcCCCCCC---CcccccC--CC-----------------------------CCC--------
Q psy9003 1052 YVLLDVVHSHASKNVLDGLNEFDGTQ---ACFFHDG--PR-----------------------------GTH-------- 1089 (1276)
Q Consensus 1052 ~VILDvV~NHt~~~~~~~~~~f~g~~---~~Yy~~~--~~-----------------------------g~~-------- 1089 (1276)
+||||+|+||++.+++|+.....+.. ..||... +. |..
T Consensus 122 ~vi~D~V~NH~~~~~~wf~~~~~~~~~~y~d~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~s~f~g~~~~~~~~~~ 201 (669)
T 3k8k_A 122 KIYLDYVMNHTGTAHPWFTEASSSSESPYRNYYSFSEDPKTDIAAGKIAMITQEGAAGYNAAEWFQVSDETAAVKGLLKF 201 (669)
T ss_dssp EEEEEECCSEEETTSHHHHHHHHCTTSTTGGGBCEESCHHHHHHTTCSTTSCSSGGGGCCGGGEEESCSCCCCEEEEEEE
T ss_pred EEEEEECcccCCCcCHHHHHHhhCCCCCccceeEECCCCcccccccccccccccccccCCCcccccccCCCccccccccc
Confidence 99999999999988765432111111 1122110 00 000
Q ss_pred ------------------------------------------------------------------------CCC-----
Q psy9003 1090 ------------------------------------------------------------------------PLW----- 1092 (1276)
Q Consensus 1090 ------------------------------------------------------------------------~~W----- 1092 (1276)
..|
T Consensus 202 ~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (669)
T 3k8k_A 202 TLDWSNAPSPILVVSTGTKADEDNPDTGTDNAKYLYYGEDICKKFYDKGNNIYELTVDFESTWGLLIRTSNASFWPSGTK 281 (669)
T ss_dssp EEECTTTTSCEEEEEECSSCCCCCCCCCCTTCCEEEETTTEEEECEEEETTEEEEEEEEEESSCEEEESCCSSSCCTTCE
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 001
Q ss_pred -------------------------------------------C-CcCCCCC-------cHHHHHHHHHHHHHHHHhCCC
Q psy9003 1093 -------------------------------------------D-SRLFNYS-------EIEVLRFLLSNLRWYLDEYQF 1121 (1276)
Q Consensus 1093 -------------------------------------------~-g~~LN~~-------np~Vr~~Iidsl~~Wv~eygV 1121 (1276)
. .++||++ ||+| ++|+++++||+++ ||
T Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~F~~~~qPDLN~~~~~~~~~Np~V-~~l~dvl~~Wl~~-GV 359 (669)
T 3k8k_A 282 YGASSSSEKLALNKDFKLTNAGNPANIMFDSQQITYFHSHFCTDWFADLNYGPVDQAGESPAY-QAIADAAKGWIAR-GV 359 (669)
T ss_dssp EBBSSTTCCBCTTSCEECBCSSSCBCBCBTTCCCCEEECTTSCTTEEEBCCCSGGGGGGCHHH-HHHHHHHHHHHTT-TC
T ss_pred ccccccccccccccccccccccccccccccccccceeeeccccccCCccCCCCCccCCCCHHH-HHHHHHHHHHHHC-CC
Confidence 1 3799999 9999 9999999999998 99
Q ss_pred cEEccCCccccccccCCCCCCCCCCCccccCCCCCchHHHHHHHHHHHHHh------hCCCeEEEEEccCCCCCCccccc
Q psy9003 1122 DGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHD------KYPEIITIAEDVSGMPASCRPVT 1195 (1276)
Q Consensus 1122 DGFRfD~a~~L~~~d~g~g~~~~~~~~~~~~~~~d~~a~~Fl~el~~~Vr~------~~PdvilIAE~~s~~p~~~~p~~ 1195 (1276)
||||+|++.+|...+ ...+...||+++++.+++ .+|++++|||.|...+.. .++.
T Consensus 360 DGFRlDaa~~i~k~~------------------~~~~~~~f~~e~~~~v~~~~~~~g~~pd~~lvGEv~~~~~~~-~~y~ 420 (669)
T 3k8k_A 360 DGLRLDAVKHIYHSE------------------TSEENPRFLKMFYEDMNAYYKQKGHTDDFYMIGEVLSEYDKV-APYY 420 (669)
T ss_dssp CEEEETTGGGSSSCS------------------SSSHHHHHHHHHHHHHHHHHHHTTCCSCCEEEECCCSCHHHH-GGGG
T ss_pred CEEEEechhhhhhcc------------------CCCccHHHHHHHHHHHHHHhhhcccCCCeEEEeccCCCHHHH-HHHh
Confidence 999999999984210 123467899999999998 899999999998743222 2332
Q ss_pred cCCcccCcccC-CCcc---chh----hHHHHHHHHHHHHHhcccCC-C-CCeeEeecCCCeEEEEE
Q psy9003 1196 EGGTGFDYRLV-SLEG---SAL----SALFDAAMNTTEERFKWLSA-D-PGYVSTKHEGDKVIIFE 1251 (1276)
Q Consensus 1196 ~gglGFD~~~n-~lEe---saL----S~~F~~~Ln~l~~~~p~L~~-~-~~~~l~nHD~~RVlsf~ 1251 (1276)
.||++.|+ .+.. .++ ...|.+.+.++...++.... + ..+++.|||++|+++..
T Consensus 421 ---~~l~~vfnF~~~~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~Fl~NHD~~R~~s~~ 483 (669)
T 3k8k_A 421 ---KGLPALFEFSFWYRLEWGINNSTGCYFAKDILSYQQKYANYRSDYIEATKLSNHDEDRTSSKL 483 (669)
T ss_dssp ---GTCSEEECHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHTTCTTCEEECCSCCTTSCCHHHHT
T ss_pred ---ccCCceeccHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhcccceeeeeccCCCCCcccccc
Confidence 25665555 2100 001 02455677777666664221 1 34677899999988754
|
| >1wpc_A Glucan 1,4-alpha-maltohexaosidase; maltohexaose-producing amylase, alpha-amylase, acarbose, HYD; HET: ACI GLC GAL; 1.90A {Bacillus SP} SCOP: b.71.1.1 c.1.8.1 PDB: 1wp6_A* 2d3l_A* 2d3n_A* 2die_A 2gjp_A* 2gjr_A 1w9x_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=7.1e-33 Score=327.49 Aligned_cols=206 Identities=19% Similarity=0.226 Sum_probs=157.4
Q ss_pred CCCceEEEEecCCccccCccCcHHHHHHhhhhHHHHcCCCCCccceeecccccccccccccceeeccCcccccccccccc
Q psy9003 893 PDNLKIYESHVGICTQEQKCASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAE 972 (1276)
Q Consensus 893 ~~d~vIYElHVr~ft~~~~~Gtf~gl~ek~LdyLK~LGVna~d~wV~LmP~f~~eew~~~~pi~~l~~~Pi~E~~i~~~~ 972 (1276)
+.+.+||+++.++|.+ ..|+|+|++++ |||||+||||+ |||||++ +. +
T Consensus 4 ~~~~vi~q~f~w~~~~--~gG~~~gi~~~-LdyL~~LGvt~----IwL~Pi~--------------------~~--~--- 51 (485)
T 1wpc_A 4 GTNGTMMQYFEWYLPN--DGNHWNRLNSD-ASNLKSKGITA----VWIPPAW--------------------KG--A--- 51 (485)
T ss_dssp -CCCCEEECCCTTCCS--SSCHHHHHHHH-HHHHHHHTCCE----EEECCCS--------------------EE--S---
T ss_pred CCCceEEEEEecCCCC--CCCcHHHHHHH-HHHHHHcCCCE----EEeCCcc--------------------cC--C---
Confidence 3478999999999975 45999999996 99999999999 9999544 32 1
Q ss_pred CCCcccCCCccccccccccccccccCCCCCCcccccccccccCCCCCccccccccccCCCCCCHHHHHHHHHHHHHcCCE
Q psy9003 973 SHDQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLY 1052 (1276)
Q Consensus 973 S~~~~~WGYdp~nyf~~d~~~y~~~S~~~Dp~~~~dap~~~yas~s~hkYt~D~~~ID~~~Gt~eEfK~LV~alHk~GI~ 1052 (1276)
+ ..+|||++.||| ++. +|-.. .+|||+||+.+|||+||++||++||+
T Consensus 52 ~--~~~~GY~~~dy~---------------------~~~-~~~q~---------~~idp~~Gt~~df~~Lv~~aH~~Gi~ 98 (485)
T 1wpc_A 52 S--QNDVGYGAYDLY---------------------DLG-EFNQK---------GTVRTKYGTRSQLQAAVTSLKNNGIQ 98 (485)
T ss_dssp S--TTCCSCSEEETT---------------------CSS-CSCBT---------TBSSCSSCCHHHHHHHHHHHHHTTCE
T ss_pred C--CCCCCCCeeccc---------------------ccc-ccccc---------CccCCCCCCHHHHHHHHHHHHHCCCE
Confidence 1 146999999999 332 11100 13779999999999999999999999
Q ss_pred EEEEEeccccCC--cccCCC------------------------cCCCCCCCc-------ccccC------CC-------
Q psy9003 1053 VLLDVVHSHASK--NVLDGL------------------------NEFDGTQAC-------FFHDG------PR------- 1086 (1276)
Q Consensus 1053 VILDvV~NHt~~--~~~~~~------------------------~~f~g~~~~-------Yy~~~------~~------- 1086 (1276)
||||+|+||++. .++|+. ..|.|..+. ||+.. +.
T Consensus 99 VilD~V~NH~~~~~~~~~f~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~y~~~~~~~~~~~~~d~~~~~~~~~~~~ 178 (485)
T 1wpc_A 99 VYGDVVMNHKGGADATEMVRAVEVNPNNRNQEVTGEYTIEAWTRFDFPGRGNTHSSFKWRWYHFDGVDWDQSRRLNNRIY 178 (485)
T ss_dssp EEEEECCSEECSCSEEEEEEEEEEETTEEEEECSCCEEEEEEEEBCCTTTTTSSCCCCBCGGGEEEESCCTTTCCSSCEE
T ss_pred EEEEEeccccCCCCcCcceeEEeeCccccccccccccccccccccCCCCCCCccccCccccccCCCCCccccccccccee
Confidence 999999999974 333321 013333211 33211 10
Q ss_pred ---CCCCCCCC--------------cCCCCCcHHHHHHHHHHHHHHHHhCCCcEEccCCccccccccCCCCCCCCCCCcc
Q psy9003 1087 ---GTHPLWDS--------------RLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDE 1149 (1276)
Q Consensus 1087 ---g~~~~W~g--------------~~LN~~np~Vr~~Iidsl~~Wv~eygVDGFRfD~a~~L~~~d~g~g~~~~~~~~~ 1149 (1276)
|....|.+ ++||++||+||++|+++++||++++||||||||++.+|.
T Consensus 179 ~~~g~~~~W~~~~~~~~~~~~~~~~~dln~~np~V~~~l~~~~~~w~~~~gvDGfR~Da~~~i~---------------- 242 (485)
T 1wpc_A 179 KFRGHGKAWDWEVDTENGNYDYLMYADIDMDHPEVVNELRNWGVWYTNTLGLDGFRIDAVKHIK---------------- 242 (485)
T ss_dssp EECSTTCCCCSSCCCTTSCCCCCSSEEECTTCHHHHHHHHHHHHHHHHHHTCSEEEETTGGGSC----------------
T ss_pred eecCCCCCcccccccccCCccccccCccccCCHHHHHHHHHHHHHHHHhCCCCEEEhHhhhcCC----------------
Confidence 11345542 799999999999999999999999999999999999882
Q ss_pred ccCCCCCchHHHHHHHHHHHHHh-hCCCeEEEEEccCCCCC
Q psy9003 1150 YFGLNVDTDALIYLMVANKFLHD-KYPEIITIAEDVSGMPA 1189 (1276)
Q Consensus 1150 ~~~~~~d~~a~~Fl~el~~~Vr~-~~PdvilIAE~~s~~p~ 1189 (1276)
.+||+++++.+++ ..|++++|||.|...+.
T Consensus 243 ----------~~f~~~~~~~~~~~~~~~~~~igE~~~~~~~ 273 (485)
T 1wpc_A 243 ----------YSFTRDWINHVRSATGKNMFAVAEFWKNDLG 273 (485)
T ss_dssp ----------HHHHHHHHHHHHHHHTCCCEEEECCCCSCHH
T ss_pred ----------HHHHHHHHHHHHHhcCCCcEEEEEeccCChH
Confidence 2489999999988 78999999999987654
|
| >1cyg_A Cyclodextrin glucanotransferase; glycosyltransferase; 2.50A {Geobacillus stearothermophilus} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 | Back alignment and structure |
|---|
Probab=99.98 E-value=2.2e-32 Score=336.57 Aligned_cols=263 Identities=17% Similarity=0.235 Sum_probs=179.7
Q ss_pred CCCCceEEEEecCCccccCc--------------------cCcHHHHHHhhhh--HHHHcCCCCCccceeeccccccccc
Q psy9003 892 KPDNLKIYESHVGICTQEQK--------------------CASYEDFVRVVIP--RIVKQGMAIPDKWIELLKKFKDEDW 949 (1276)
Q Consensus 892 ~~~d~vIYElHVr~ft~~~~--------------------~Gtf~gl~ek~Ld--yLK~LGVna~d~wV~LmP~f~~eew 949 (1276)
.+++++|||+++|+|..... .|+|+|++++ || |||+||||+ |||||+|+...-
T Consensus 8 ~~~~~viYqI~p~rF~d~~~~n~~~~~~~~~~~~~~~~~~gGdl~gi~~k-Ld~~yLk~LGv~a----IwL~Pi~~~~~~ 82 (680)
T 1cyg_A 8 NFTSDVVYQIVVDRFVDGNTSNNPSGALFSSGCTNLRKYCGGDWQGIINK-INDGYLTDMGVTA----IWISQPVENVFS 82 (680)
T ss_dssp CCTTCCEEEECGGGTCCSCGGGCCCGGGBCGGGCSTTSBCCCCHHHHHHH-HHTSTTTTTTCCE----EEECCCEEECCC
T ss_pred CCccceEEEEecccccCCCCCcCCCCcccCCCccccccccCcCHHHHHhh-cCHHHHHhCCCCE----EEeCccccCccc
Confidence 35789999999999974211 2999999996 99 999999999 999977652100
Q ss_pred ccccceeeccCccccccccccccCCCcccCCCccccccccccccccccCCCCCCcccccccccccCCCCCcccccccccc
Q psy9003 950 NMGNIVHTLTNRRYMEKTVAYAESHDQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHK 1029 (1276)
Q Consensus 950 ~~~~pi~~l~~~Pi~E~~i~~~~S~~~~~WGYdp~nyf~~d~~~y~~~S~~~Dp~~~~dap~~~yas~s~hkYt~D~~~I 1029 (1276)
|... ..+ ...+|||++.||| +++
T Consensus 83 ------------~~~~----~~g--~~~~~GY~~~Dy~---------------------~id------------------ 105 (680)
T 1cyg_A 83 ------------VMND----ASG--SASYHGYWARDFK---------------------KPN------------------ 105 (680)
T ss_dssp ------------CCSS----SSC--CCSTTSCSEEEEE---------------------EEC------------------
T ss_pred ------------cccc----cCC--CCCCCCcCchhcc---------------------ccC------------------
Confidence 1000 011 1356899988888 444
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCEEEEEEeccccCCcccCCCcC---------------CCCCCCcccccCCCCCCCCCC-
Q psy9003 1030 AGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNE---------------FDGTQACFFHDGPRGTHPLWD- 1093 (1276)
Q Consensus 1030 D~~~Gt~eEfK~LV~alHk~GI~VILDvV~NHt~~~~~~~~~~---------------f~g~~~~Yy~~~~~g~~~~W~- 1093 (1276)
|+||+++|||+||++||++||+||||+|+||++..+...... +....+.||+.... .+|+
T Consensus 106 -p~~Gt~~df~~Lv~~aH~~GIkVilD~V~NHts~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~---~~~~~ 181 (680)
T 1cyg_A 106 -PFFGTLSDFQRLVDAAHAKGIKVIIDFAPNHTSPASETNPSYMENGRLYDNGTLLGGYTNDANMYFHHNGG---TTFSS 181 (680)
T ss_dssp -TTTCCHHHHHHHHHHHHHTTCEEEEEECTTEEEECCSSCTTSTTTTCEEETTEEEECSTTCTTCCBCCSCB---CCCSS
T ss_pred -cccCCHHHHHHHHHHHHHCCCEEEEEeCCCCCCcccccCcchhhcCccccCcccccccCCCchhceecCCC---CCcCC
Confidence 999999999999999999999999999999999876322100 00011245543221 2232
Q ss_pred -----------CcCCCCCcHHHHHHHHHHHHHHHHhCCCcEEccCCccccccccCCCCCCCCCCCccccCCCCCchHHHH
Q psy9003 1094 -----------SRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIY 1162 (1276)
Q Consensus 1094 -----------g~~LN~~np~Vr~~Iidsl~~Wv~eygVDGFRfD~a~~L~~~d~g~g~~~~~~~~~~~~~~~d~~a~~F 1162 (1276)
.++||++||+||++|+++++||++ +||||||||++.+|. ..|
T Consensus 182 ~~~~~y~~~~~~pDLn~~np~Vr~~i~~~~~~Wl~-~GVDGfRlDa~~~i~--------------------------~~f 234 (680)
T 1cyg_A 182 LEDGIYRNLFDLADLNHQNPVIDRYLKDAVKMWID-MGIDGIRMDAVKHMP--------------------------FGW 234 (680)
T ss_dssp HHHHHSSBSTTEEEBCTTSHHHHHHHHHHHHHHHT-TTCCEEEESCGGGSC--------------------------SHH
T ss_pred CccccccCcCCCCccccCCHHHHHHHHHHHHHHHh-CCCCEEEEeccccCC--------------------------HHH
Confidence 479999999999999999999999 999999999999882 138
Q ss_pred HHHHHHHHHhhCCCeEEEEEccCCCCCCcccc----ccCC-cccCcccC-CCc----cchh-hHHHHHHHHHHHHHhccc
Q psy9003 1163 LMVANKFLHDKYPEIITIAEDVSGMPASCRPV----TEGG-TGFDYRLV-SLE----GSAL-SALFDAAMNTTEERFKWL 1231 (1276)
Q Consensus 1163 l~el~~~Vr~~~PdvilIAE~~s~~p~~~~p~----~~gg-lGFD~~~n-~lE----esaL-S~~F~~~Ln~l~~~~p~L 1231 (1276)
|+++++.+++..| ++++||.|.+........ ..++ .-|||.+. .+. .... ..+|.+.+..+...++.
T Consensus 235 ~~~~~~~v~~~~~-~~~vgE~~~~~~~~~~~~~~~~~~~~~~~~df~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~- 312 (680)
T 1cyg_A 235 QKSLMDEIDNYRP-VFTFGEWFLSENEVDANNHYFANESGMSLLDFRFGQKLRQVLRNNSDNWYGFNQMIQDTASAYDE- 312 (680)
T ss_dssp HHHHHHHHHHHCC-CEEEECCCCCTTCCCHHHHHHHHHSSCEEBCHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHCTT-
T ss_pred HHHHHHHHhhcCC-cEEEccCCCCCcccchhhhhhhccCCCceECchHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccc-
Confidence 9999999988866 899999876533221111 0111 12444333 110 0000 14455556555554442
Q ss_pred CCCCCeeEeecCCCeEEE
Q psy9003 1232 SADPGYVSTKHEGDKVII 1249 (1276)
Q Consensus 1232 ~~~~~~~l~nHD~~RVls 1249 (1276)
.....+++.|||++|+.+
T Consensus 313 ~~~~~~fl~NHD~~R~~s 330 (680)
T 1cyg_A 313 VLDQVTFIDNHDMDRFMI 330 (680)
T ss_dssp GGGCEECSCCTTSCCSCC
T ss_pred hhhceEEecCCCcchhcc
Confidence 123346778999999887
|
| >3bc9_A AMYB, alpha amylase, catalytic region; acarbose, thermostable, halophilic, N domain, starch binding, hydrolase; HET: G6D GLC ACI BGC ACR; 1.35A {Halothermothrix orenii} PDB: 3bcd_A* 3bcf_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.1e-32 Score=335.11 Aligned_cols=227 Identities=18% Similarity=0.226 Sum_probs=164.2
Q ss_pred CCCCceEEEEecCC-----ccc--cCccCcHHHHHHhhhhHHHHcCCCCCccceeecccccccccccccceeeccCcccc
Q psy9003 892 KPDNLKIYESHVGI-----CTQ--EQKCASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYM 964 (1276)
Q Consensus 892 ~~~d~vIYElHVr~-----ft~--~~~~Gtf~gl~ek~LdyLK~LGVna~d~wV~LmP~f~~eew~~~~pi~~l~~~Pi~ 964 (1276)
++++.+|||++++. |+. ....|+|+|++++ |||||+||||+ |||+|+|+
T Consensus 119 w~~~~viyq~F~w~~~~~~f~~~~~~~gG~~~gi~~~-LdyLk~LGvta----IwL~Pi~~------------------- 174 (599)
T 3bc9_A 119 QEVNHTILQAFYWEMNTGEYATEHPEEANLWNLLAER-APELAEAGFTA----VWLPPANK------------------- 174 (599)
T ss_dssp GGCCCCEEECCCTTTTSHHHHHHCGGGGGHHHHHHHH-HHHHHHHTCCE----EECCCCSE-------------------
T ss_pred hhcCceEEEEeeccccccccccCCCCCCCCHHHHHHH-HHHHHHcCCCE----EEECCccc-------------------
Confidence 44789999977665 753 3445999999996 99999999999 99995543
Q ss_pred ccccccccCCCcccCCCccccccccccccccccCCCCCCcccccccccccCCCCCccccccccccCCCCCCHHHHHHHHH
Q psy9003 965 EKTVAYAESHDQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVD 1044 (1276)
Q Consensus 965 E~~i~~~~S~~~~~WGYdp~nyf~~d~~~y~~~S~~~Dp~~~~dap~~~yas~s~hkYt~D~~~ID~~~Gt~eEfK~LV~ 1044 (1276)
. + + +..+|||++.||| ++.+.|.. -+|||+||+.+|||+||+
T Consensus 175 -~--~---s-~~~~~GYd~~dy~---------------------~l~e~~q~----------g~idp~~Gt~~dfk~Lv~ 216 (599)
T 3bc9_A 175 -G--M---A-GIHDVGYGTYDLW---------------------DLGEFDQK----------GTVRTKYGTKGELENAID 216 (599)
T ss_dssp -E--T---T-GGGCCSCSEEETT---------------------CSSCSCBT----------TBSSBTTBCHHHHHHHHH
T ss_pred -C--C---C-CCCCCCCChhhcc---------------------cccccccc----------cccCCCCCCHHHHHHHHH
Confidence 2 1 1 1246999999999 33311110 047899999999999999
Q ss_pred HHHHcCCEEEEEEeccccCC--cccCCCc------------------CCCCCCCc-------cccc------CCC---C-
Q psy9003 1045 ECHKAGLYVLLDVVHSHASK--NVLDGLN------------------EFDGTQAC-------FFHD------GPR---G- 1087 (1276)
Q Consensus 1045 alHk~GI~VILDvV~NHt~~--~~~~~~~------------------~f~g~~~~-------Yy~~------~~~---g- 1087 (1276)
+||++||+||||+|+||++. .++|+.. .|.+.... ||+. .+. +
T Consensus 217 ~aH~~GI~VilD~V~NH~~~~~~~~wf~~~~~~~~~~~~~~~~w~~~~~pg~~~~Y~~~~~~w~~f~g~d~~~~~~~~~~ 296 (599)
T 3bc9_A 217 ALHNNDIKVYFDAVLNHRMGADYAETVLLDENSRDKPGQYIKAWTGFNFPGRNGEYSNFTWNGQCFDGTDWDDYSKESGK 296 (599)
T ss_dssp HHHHTTCEEEEEECCSEECSCSEEEEEEBCTTCSSSTTCEEEEEEEBCCTTTTTSSCCCCBCGGGEEEEEEETTTTEEEE
T ss_pred HHHHCCCEEEEEECcCCCCCCcCCccccccccCCCCCcccccccccccCCCCCCCCccCccccccCCCCCCccccccccc
Confidence 99999999999999999964 3333211 11221111 1111 000 0
Q ss_pred ---CCCCCC-----------CcCCCCCcHHHHHHHHHHHHHHHHhCCCcEEccCCccccccccCCCCCCCCCCCccccCC
Q psy9003 1088 ---THPLWD-----------SRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGL 1153 (1276)
Q Consensus 1088 ---~~~~W~-----------g~~LN~~np~Vr~~Iidsl~~Wv~eygVDGFRfD~a~~L~~~d~g~g~~~~~~~~~~~~~ 1153 (1276)
....|. .++||+++|+||++|+++++||++++||||||||++.+|.
T Consensus 297 f~~~~~~W~~~~~~~~~~~~~pdLn~~np~Vr~~l~~~l~~Wl~e~GVDGfRlDaa~~i~-------------------- 356 (599)
T 3bc9_A 297 YLFDEKSWDWTYNWDEDYLMGADVDYENEAVQNDVIDWGQWIINNIDFDGFRLDAVKHID-------------------- 356 (599)
T ss_dssp EEBTTCCCCCCSSTTCSCCSSEEECTTCHHHHHHHHHHHHHHHHTTCCCEEEETTGGGSC--------------------
T ss_pred cccCCCCcccccCCccccccCCCcCCCCHHHHHHHHHHHHHHHHcCCCCEEEecccccCC--------------------
Confidence 023443 2689999999999999999999999999999999999882
Q ss_pred CCCchHHHHHHHHHHHHHh-hCCCeEEEEEccCCCCCCcccccc--C---CcccCcccC
Q psy9003 1154 NVDTDALIYLMVANKFLHD-KYPEIITIAEDVSGMPASCRPVTE--G---GTGFDYRLV 1206 (1276)
Q Consensus 1154 ~~d~~a~~Fl~el~~~Vr~-~~PdvilIAE~~s~~p~~~~p~~~--g---glGFD~~~n 1206 (1276)
..||+++++.+++ .+|++++|||.|...+..+.++.. + ..+|||.++
T Consensus 357 ------~~f~~~~~~~l~~~~~p~~~~igE~~~~~~~~~~~y~~~~~~~~~~~fdf~~~ 409 (599)
T 3bc9_A 357 ------YRFIDKWMSAVQNSSNRDVFFVGEAWVEDVDDLKGFLDTVGNPDLRVFDFPLR 409 (599)
T ss_dssp ------HHHHHHHHHHHHHTCSSCCEEEECCCCCSHHHHHHHHHHHCCTTEEEECHHHH
T ss_pred ------HHHHHHHHHHHHHhhCCCeEEEEcccCCCHHHHHHHhcccCCccceecChHHH
Confidence 2489999999988 689999999999876654443321 1 246776544
|
| >3ucq_A Amylosucrase; thermostability, amylose synthesis, sucrose isomerization, beta/alpha-barrel, carbohydrate binding, transferase; 1.97A {Deinococcus geothermalis} PDB: 3uer_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=5.2e-32 Score=332.21 Aligned_cols=201 Identities=13% Similarity=0.165 Sum_probs=153.4
Q ss_pred ceEEEEecCCccccCccCcHHHHHHhhhhHHHHcCCCCCccceeecccccccccccccceeeccCccccccccccccCCC
Q psy9003 896 LKIYESHVGICTQEQKCASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAESHD 975 (1276)
Q Consensus 896 ~vIYElHVr~ft~~~~~Gtf~gl~ek~LdyLK~LGVna~d~wV~LmP~f~~eew~~~~pi~~l~~~Pi~E~~i~~~~S~~ 975 (1276)
++|||+|+++|+ |+|+|++++ ||||++||||+ |||+|++ +. +. .
T Consensus 96 ~viY~~~~~~f~-----G~~~gl~~~-LdyL~~lGv~~----v~l~P~~--------------------~~--~~----~ 139 (655)
T 3ucq_A 96 MVGYVAYTDRFA-----GTLKGVEER-LDYLEGLGVKY----LHLMPLL--------------------RP--RE----G 139 (655)
T ss_dssp CCEEEECHHHHH-----SSHHHHHTT-HHHHHHTTCCE----EEECCCE--------------------EE--CS----S
T ss_pred eEEEEEehhhhC-----CCHHHHHHh-hHHHHHcCCCE----EEECCCc--------------------CC--CC----C
Confidence 499999999996 999999986 99999999999 9999544 32 10 1
Q ss_pred cccCCCccccccccccccccccCCCCCCcccccccccccCCCCCccccccccccCCCCCCHHHHHHHHHHHHHcCCEEEE
Q psy9003 976 QALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLYVLL 1055 (1276)
Q Consensus 976 ~~~WGYdp~nyf~~d~~~y~~~S~~~Dp~~~~dap~~~yas~s~hkYt~D~~~ID~~~Gt~eEfK~LV~alHk~GI~VIL 1055 (1276)
..+|||+|.||+ +++ |+||+.+||++||++||++||+||+
T Consensus 140 ~~~~GY~~~dy~---------------------~i~-------------------~~~Gt~~d~~~lv~~~h~~Gi~Vi~ 179 (655)
T 3ucq_A 140 ENDGGYAVQDYR---------------------AVR-------------------PDLGTMDDLSALARALRGRGISLVL 179 (655)
T ss_dssp CCGGGTSEEEEE---------------------EEC-------------------GGGCCHHHHHHHHHHHHHTTCEEEE
T ss_pred CCCCCcCCcCcC---------------------ccC-------------------ccCCCHHHHHHHHHHHHHCCCEEEE
Confidence 246999999999 444 8899999999999999999999999
Q ss_pred EEeccccCCcccCCCcCCCCCC--Ccccc-cCC------------------CCCCCCCC------------------CcC
Q psy9003 1056 DVVHSHASKNVLDGLNEFDGTQ--ACFFH-DGP------------------RGTHPLWD------------------SRL 1096 (1276)
Q Consensus 1056 DvV~NHt~~~~~~~~~~f~g~~--~~Yy~-~~~------------------~g~~~~W~------------------g~~ 1096 (1276)
|+|+||++.+++|+.....+.. +.||. .++ .+....|. .++
T Consensus 180 D~V~NH~s~~~~wf~~~~~~~~~~~d~y~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~qpD 259 (655)
T 3ucq_A 180 DLVLNHVAREHAWAQKARAGDPKYRAYFHLFPDRRGPDAFEATLPEIFPDFAPGNFSWDEEIGEGEGGWVWTTFNSYQWD 259 (655)
T ss_dssp EECCSEEETTSHHHHHHHTTCHHHHTTBCEESSSHHHHHHHTTCCCSCTTTSCSSEEEETTSSSSSCEEEECSSSTTEEE
T ss_pred EeeccccccchHHHHHhhcCCCCCcccEEEcCCCCCCccccccCccccccCCCCcccccccccccCCceEeccccCCCCc
Confidence 9999999998866432222211 12221 100 00000111 158
Q ss_pred CCCCcHHHHHHHHHHHHHHHHhCCCcEEccCCccccccccCCCCCCCCCCCccccCCCCCchHHHHHHHHHHHHHhhCCC
Q psy9003 1097 FNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPE 1176 (1276)
Q Consensus 1097 LN~~np~Vr~~Iidsl~~Wv~eygVDGFRfD~a~~L~~~d~g~g~~~~~~~~~~~~~~~d~~a~~Fl~el~~~Vr~~~Pd 1176 (1276)
||++||+||++|++++++|++ +||||||||++++|... . |..+ ...++.+.||+++++.++...|+
T Consensus 260 Ln~~np~V~~~i~~~l~~w~~-~GvDGfRlDa~~~l~k~-~--g~~~----------~~~~~~~~~l~~~r~~~~~~~p~ 325 (655)
T 3ucq_A 260 LNWANPDVFLEFVDIILYLAN-RGVEVFRLDAIAFIWKR-L--GTDC----------QNQPEVHHLTRALRAAARIVAPA 325 (655)
T ss_dssp BCTTSHHHHHHHHHHHHHHHT-TTCCEEEETTGGGSCCC-T--TSCS----------SSCHHHHHHHHHHHHHHHHHCTT
T ss_pred cCCCCHHHHHHHHHHHHHHHH-CCCCEEEEechhhcccc-C--CCcc----------CCcHHHHHHHHHHHHHHHHhCCC
Confidence 999999999999999999995 99999999999998422 1 1110 11246789999999999999999
Q ss_pred eEEEEEccCC
Q psy9003 1177 IITIAEDVSG 1186 (1276)
Q Consensus 1177 vilIAE~~s~ 1186 (1276)
+++|||.|..
T Consensus 326 ~~~vgE~~~~ 335 (655)
T 3ucq_A 326 VAFKAEAIVA 335 (655)
T ss_dssp CEEEECCCCC
T ss_pred eEEEEecCCC
Confidence 9999999864
|
| >3bh4_A Alpha-amylase; calcium, carbohydrate metabolism, glycosidase, hydrolase, metal-binding, secreted; 1.40A {Bacillus amyloliquefaciens} PDB: 1e43_A 1e3z_A* 1e40_A* 1e3x_A 1vjs_A 1ob0_A 1bli_A 1bpl_B 1bpl_A | Back alignment and structure |
|---|
Probab=99.97 E-value=7.8e-32 Score=318.48 Aligned_cols=204 Identities=19% Similarity=0.247 Sum_probs=154.8
Q ss_pred CceEEEEecCCccccCccCcHHHHHHhhhhHHHHcCCCCCccceeecccccccccccccceeeccCccccccccccccCC
Q psy9003 895 NLKIYESHVGICTQEQKCASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAESH 974 (1276)
Q Consensus 895 d~vIYElHVr~ft~~~~~Gtf~gl~ek~LdyLK~LGVna~d~wV~LmP~f~~eew~~~~pi~~l~~~Pi~E~~i~~~~S~ 974 (1276)
+.+||+++.+.+.. ..|+|+|++++ |||||+||||+ |||||++ +. + +
T Consensus 2 ~~vi~q~f~w~~~~--~gG~~~gi~~~-LdyL~~LGvt~----I~L~Pi~--------------------~~--~---~- 48 (483)
T 3bh4_A 2 NGTLMQYFEWYTPN--DGQHWKRLQND-AEHLSDIGITA----VWIPPAY--------------------KG--L---S- 48 (483)
T ss_dssp CCCEEECCCTTCCS--SSCHHHHHHHH-HHHHHHHTCCE----EEECCCS--------------------EE--S---S-
T ss_pred CccEEEEEEeccCC--CCCCHHHHHHH-HHHHHhcCCCE----EEcCccc--------------------cC--C---C-
Confidence 46899999988764 45999999996 99999999999 9999544 32 1 1
Q ss_pred CcccCCCccccccccccccccccCCCCCCcccccccccccCCCCCccccccccccCCCCCCHHHHHHHHHHHHHcCCEEE
Q psy9003 975 DQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLYVL 1054 (1276)
Q Consensus 975 ~~~~WGYdp~nyf~~d~~~y~~~S~~~Dp~~~~dap~~~yas~s~hkYt~D~~~ID~~~Gt~eEfK~LV~alHk~GI~VI 1054 (1276)
..+|||++.||| ++. +|... .+|||+||+.+|||+||++||++||+||
T Consensus 49 -~~~~GY~~~dy~---------------------~~~-~~~~~---------~~id~~~Gt~~df~~lv~~aH~~Gi~Vi 96 (483)
T 3bh4_A 49 -QSDNGYGPYDLY---------------------DLG-EFQQK---------GTVRTKYGTKSELQDAIGSLHSRNVQVY 96 (483)
T ss_dssp -TTSCSSSEEETT---------------------CSS-CSCCS---------SCSSCSSCCHHHHHHHHHHHHHTTCEEE
T ss_pred -CCCCCccccccc---------------------ccc-ccccc---------CccCCCCCCHHHHHHHHHHHHHCCCEEE
Confidence 146999999999 332 11110 1477999999999999999999999999
Q ss_pred EEEeccccCC--cccCCC------------------------cCCCCCCCc-------cccc------CCC---------
Q psy9003 1055 LDVVHSHASK--NVLDGL------------------------NEFDGTQAC-------FFHD------GPR--------- 1086 (1276)
Q Consensus 1055 LDvV~NHt~~--~~~~~~------------------------~~f~g~~~~-------Yy~~------~~~--------- 1086 (1276)
||+|+||++. .++|+. ..|.+..+. ||+. .+.
T Consensus 97 lD~V~NH~~~~d~~~~f~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 176 (483)
T 3bh4_A 97 GDVVLNHKAGADATEDVTAVEVNPANRNQETSEEYQIKAWTDFRFPGRGNTYSDFKWHWYHFDGADWDESRKISRIFKFR 176 (483)
T ss_dssp EEECCSEECCCSEEEEEEEEEEETTEEEEECSCCEEEEEEEEBCCTTTTTSSCCCCBCGGGEEEEEEETTTTEEEEEEEC
T ss_pred EEEccCcccCcccccceeeeeeCccccccccccccccccccccccCCCCcccccCccccccCCCCCcccccCcccccccc
Confidence 9999999974 333221 013332211 2221 010
Q ss_pred CCCCCCCC--------------cCCCCCcHHHHHHHHHHHHHHHHhCCCcEEccCCccccccccCCCCCCCCCCCccccC
Q psy9003 1087 GTHPLWDS--------------RLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFG 1152 (1276)
Q Consensus 1087 g~~~~W~g--------------~~LN~~np~Vr~~Iidsl~~Wv~eygVDGFRfD~a~~L~~~d~g~g~~~~~~~~~~~~ 1152 (1276)
|....|.+ ++||++||+||++|+++++||++++||||||||++.+|.
T Consensus 177 g~~~~W~~~~~~~~~~~~~~~~~dln~~np~V~~~l~~~~~~w~~~~gvDGfR~Da~~~i~------------------- 237 (483)
T 3bh4_A 177 GEGKAWDWEVSSENGNYDYLMYADVDYDHPDVVAETKKWGIWYANELSLDGFRIDAAKHIK------------------- 237 (483)
T ss_dssp STTCCCCSSSCCTTSCCCCCSSEEECTTCHHHHHHHHHHHHHHHHHHTCCEEEETTGGGSC-------------------
T ss_pred CCCCCcccccccccCccccccCCccccCCHHHHHHHHHHHHHHHHhcCCCEEEEechhcCC-------------------
Confidence 11344542 689999999999999999999999999999999999882
Q ss_pred CCCCchHHHHHHHHHHHHHh-hCCCeEEEEEccCCCCC
Q psy9003 1153 LNVDTDALIYLMVANKFLHD-KYPEIITIAEDVSGMPA 1189 (1276)
Q Consensus 1153 ~~~d~~a~~Fl~el~~~Vr~-~~PdvilIAE~~s~~p~ 1189 (1276)
..||+++++.+++ ..|++++|||.|...+.
T Consensus 238 -------~~f~~~~~~~~~~~~~~~~~~igE~~~~~~~ 268 (483)
T 3bh4_A 238 -------FSFLRDWVQAVRQATGKEMFTVAEYWQNNAG 268 (483)
T ss_dssp -------HHHHHHHHHHHHHHHCSCCEEEECCCCSCHH
T ss_pred -------HHHHHHHHHHHHHhcCCCcEEEEEecCCChH
Confidence 2489999999988 68999999999987553
|
| >3czg_A Sucrose hydrolase; (alpha/beta)8-barrel; HET: GLC; 1.80A {Xanthomonas axonopodis PV} PDB: 3cze_A* 3czl_A* 3czk_A* 2wpg_A | Back alignment and structure |
|---|
Probab=99.97 E-value=4.6e-32 Score=332.09 Aligned_cols=202 Identities=15% Similarity=0.187 Sum_probs=155.5
Q ss_pred CceEEEEecCCccccCccCcHHHHHHhhhhHHHHcCCCCCccceeecccccccccccccceeeccCccccccccccccCC
Q psy9003 895 NLKIYESHVGICTQEQKCASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAESH 974 (1276)
Q Consensus 895 d~vIYElHVr~ft~~~~~Gtf~gl~ek~LdyLK~LGVna~d~wV~LmP~f~~eew~~~~pi~~l~~~Pi~E~~i~~~~S~ 974 (1276)
+++|||+|+++|+ |+|+|++++ |||||+||||+ |||||+|+ . + .+
T Consensus 90 ~~viY~i~~~~F~-----Gdl~gi~~~-LdyL~~LGv~~----I~L~Pi~~--------------------~--~-~~-- 134 (644)
T 3czg_A 90 HMLGYSAYADRFA-----GTLQGVAER-VPYLQELGVRY----LHLLPFLR--------------------A--R-AG-- 134 (644)
T ss_dssp TCCEEEECHHHHH-----SSHHHHHHT-HHHHHHHTCCE----EEECCCBC--------------------B--C-SS--
T ss_pred CcEEEEEechhhC-----CCHHHHHHH-HHHHHHcCCCE----EEeCCCCc--------------------C--C-CC--
Confidence 3899999999996 899999996 89999999999 99995553 2 1 11
Q ss_pred CcccCCCccccccccccccccccCCCCCCcccccccccccCCCCCccccccccccCCCCCCHHHHHHHHHHHHHcCCEEE
Q psy9003 975 DQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLYVL 1054 (1276)
Q Consensus 975 ~~~~WGYdp~nyf~~d~~~y~~~S~~~Dp~~~~dap~~~yas~s~hkYt~D~~~ID~~~Gt~eEfK~LV~alHk~GI~VI 1054 (1276)
..+|||++.||+ +++ |+||+.+||++||++||++||+||
T Consensus 135 -~~~~GY~~~dy~---------------------~vd-------------------p~~Gt~~df~~Lv~~aH~~GI~Vi 173 (644)
T 3czg_A 135 -DNDGGFAVSDYG---------------------QVE-------------------PSLGSNDDLVALTSRLREAGISLC 173 (644)
T ss_dssp -CCTTTTSBSCTT---------------------SBC-------------------GGGCCHHHHHHHHHHHHHTTCEEE
T ss_pred -CCCCCcCccccc---------------------ccC-------------------cccCCHHHHHHHHHHHHHCCCEEE
Confidence 247999999999 444 889999999999999999999999
Q ss_pred EEEeccccCCcccCCCcCCCCCC--CcccccCCCC-----------------CCCCCC----------------CcCCCC
Q psy9003 1055 LDVVHSHASKNVLDGLNEFDGTQ--ACFFHDGPRG-----------------THPLWD----------------SRLFNY 1099 (1276)
Q Consensus 1055 LDvV~NHt~~~~~~~~~~f~g~~--~~Yy~~~~~g-----------------~~~~W~----------------g~~LN~ 1099 (1276)
||+|+|||+.+++|+.....+.. +.||...+++ ...+|. .++||+
T Consensus 174 lD~V~NH~s~~~~wf~~~~~~~~~y~d~y~~~~~~~~p~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~f~~~~pdLN~ 253 (644)
T 3czg_A 174 ADFVLNHTADDHAWAQAARAGDARYLDYYHHFADRTVPDRYEATLGQVFPHTAPGNFTWVDDTAQWMWTTFYPYQWDLNW 253 (644)
T ss_dssp EEECCSEEETTSHHHHHHHTTCHHHHTTBCEESSSHHHHHHHHHCCCC------CCEEEETTTTEEEECSSSTTEEEBCT
T ss_pred EEEecCCcccchhhHHHHhcCCCcccCceecCCCCCCCcchhhcccccCCCCCCCCccccCCCCceEecccccCCCcCCC
Confidence 99999999998876432222211 2333221100 001221 158999
Q ss_pred CcHHHHHHHHHHHHHHHHhCCCcEEccCCccccccccCCCCCCCCCCCccccCCCCC-chHHHHHHHHHHHHHhhCCCeE
Q psy9003 1100 SEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVD-TDALIYLMVANKFLHDKYPEII 1178 (1276)
Q Consensus 1100 ~np~Vr~~Iidsl~~Wv~eygVDGFRfD~a~~L~~~d~g~g~~~~~~~~~~~~~~~d-~~a~~Fl~el~~~Vr~~~Pdvi 1178 (1276)
+||+||++|+++++||+ ++||||||||++.+|... . +. ...+ ++.+.||+++++.+++..|+++
T Consensus 254 ~np~V~~~i~~~~~~wl-~~GvDGfRlDa~~~i~~~-~--~~-----------~~~n~p~~~~~l~~~r~~~~~~~p~~~ 318 (644)
T 3czg_A 254 SNPAVFGDMALAMLRLA-NLGVEAFRLDSTAYLWKR-I--GT-----------DCMNQSEAHTLLVALRAVTDIVAPAVV 318 (644)
T ss_dssp TSHHHHHHHHHHHHHHH-HTTEEEEEEETGGGSCCC-T--TS-----------CSSSCHHHHHHHHHHHHHHHHHCTTCE
T ss_pred CCHHHHHHHHHHHHHHH-HcCCCEEEEecccccccc-c--CC-----------cccCcHHHHHHHHHHHHHHHHhCCCeE
Confidence 99999999999999999 599999999999988421 1 10 0122 3457899999999999999999
Q ss_pred EEEEccCCC
Q psy9003 1179 TIAEDVSGM 1187 (1276)
Q Consensus 1179 lIAE~~s~~ 1187 (1276)
+|||.|...
T Consensus 319 ligE~~~~~ 327 (644)
T 3czg_A 319 MKAEAIVPM 327 (644)
T ss_dssp EEEECCSCG
T ss_pred EEEEecCCH
Confidence 999999643
|
| >1ud2_A Amylase, alpha-amylase; calcium-free, alkaline, hydrolase; 2.13A {Bacillus SP} SCOP: b.71.1.1 c.1.8.1 PDB: 1ud4_A 1ud5_A 1ud6_A 1ud8_A 1ud3_A | Back alignment and structure |
|---|
Probab=99.97 E-value=7.7e-32 Score=318.30 Aligned_cols=205 Identities=18% Similarity=0.223 Sum_probs=156.4
Q ss_pred CceEEEEecCCccccCccCcHHHHHHhhhhHHHHcCCCCCccceeecccccccccccccceeeccCccccccccccccCC
Q psy9003 895 NLKIYESHVGICTQEQKCASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAESH 974 (1276)
Q Consensus 895 d~vIYElHVr~ft~~~~~Gtf~gl~ek~LdyLK~LGVna~d~wV~LmP~f~~eew~~~~pi~~l~~~Pi~E~~i~~~~S~ 974 (1276)
+.+|||++.+.+.+ ..|+|+|++++ |||||+||||+ |||||++ +. + +
T Consensus 4 ~~vi~q~f~w~~~~--~gG~~~gi~~~-LdyL~~LGvt~----I~l~Pi~--------------------~~--~---~- 50 (480)
T 1ud2_A 4 NGTMMQYYEWHLEN--DGQHWNRLHDD-AAALSDAGITA----IWIPPAY--------------------KG--N---S- 50 (480)
T ss_dssp CCCEEECCCTTCCC--SSCHHHHHHHH-HHHHHHHTCCE----EEECCCS--------------------EE--S---S-
T ss_pred CceEEEeeeccCCC--CCCcHHHHHHH-HHHHHHcCCCE----EEeCCcc--------------------cC--C---C-
Confidence 67999999999876 35999999996 99999999999 9999554 32 1 1
Q ss_pred CcccCCCccccccccccccccccCCCCCCcccccccccccCCCCCccccccccccCCCCCCHHHHHHHHHHHHHcCCEEE
Q psy9003 975 DQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLYVL 1054 (1276)
Q Consensus 975 ~~~~WGYdp~nyf~~d~~~y~~~S~~~Dp~~~~dap~~~yas~s~hkYt~D~~~ID~~~Gt~eEfK~LV~alHk~GI~VI 1054 (1276)
..+|||++.||| ++. +|... .+|||+||+.+|||+||++||++||+||
T Consensus 51 -~~~~GY~~~dy~---------------------~~~-~~~~~---------~~idp~~Gt~~df~~lv~~aH~~Gi~Vi 98 (480)
T 1ud2_A 51 -QADVGYGAYDLY---------------------DLG-EFNQK---------GTVRTKYGTKAQLERAIGSLKSNDINVY 98 (480)
T ss_dssp -TTCCSSSEEETT---------------------CSS-CSCBT---------TBSSCSSCCHHHHHHHHHHHHHTTCEEE
T ss_pred -CCCCCcCccchh---------------------hcc-ccccc---------CccCCCCCCHHHHHHHHHHHHHCCCEEE
Confidence 146999999999 333 12211 1477999999999999999999999999
Q ss_pred EEEeccccCC--cccCCC------------------------cCCCCCCC-------cccccC------CCC-------C
Q psy9003 1055 LDVVHSHASK--NVLDGL------------------------NEFDGTQA-------CFFHDG------PRG-------T 1088 (1276)
Q Consensus 1055 LDvV~NHt~~--~~~~~~------------------------~~f~g~~~-------~Yy~~~------~~g-------~ 1088 (1276)
||+|+||++. .++|+. ..|.|..+ .||+.. +.. .
T Consensus 99 lD~V~NH~~~~~~~~~f~~~~~~~~~~~~~~g~~~~~~~w~~~~~pg~~~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 178 (480)
T 1ud2_A 99 GDVVMNHKMGADFTEAVQAVQVNPTNRWQDISGAYTIDAWTGFDFSGRNNAYSDFKWRWFHFNGVDWDQRYQENHIFRFA 178 (480)
T ss_dssp EEECCSEECCCSEEEEEEEEEEETTEEEEECSCCEEEEEEEEBCCGGGTTSSCCCCBCGGGEEEEEEETTTTEEEEEEET
T ss_pred EEEccCccccccccccceeeecCCcccccccccccccccccccccCCCCCCcccCcccccccCCCCCccccccccccccc
Confidence 9999999974 333321 01222221 133211 110 0
Q ss_pred CCCCCC--------------cCCCCCcHHHHHHHHHHHHHHHHhCCCcEEccCCccccccccCCCCCCCCCCCccccCCC
Q psy9003 1089 HPLWDS--------------RLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLN 1154 (1276)
Q Consensus 1089 ~~~W~g--------------~~LN~~np~Vr~~Iidsl~~Wv~eygVDGFRfD~a~~L~~~d~g~g~~~~~~~~~~~~~~ 1154 (1276)
...|.. ++||++||+||++|+++++||++++||||||||++.+|.
T Consensus 179 ~~~W~~~~~~~~g~~~~~~~~dLn~~np~V~~~l~~~~~~w~~~~gvDGfR~Da~~~i~--------------------- 237 (480)
T 1ud2_A 179 NTNWNWRVDEENGNYDYLLGSNIDFSHPEVQDELKDWGSWFTDELDLDGYRLDAIKHIP--------------------- 237 (480)
T ss_dssp TCCCCSSCCCTTSCCCCCSSEEECTTSHHHHHHHHHHHHHHHHHHTCSEEEETTGGGSC---------------------
T ss_pred CCCcccccccccCccccccCCccCCCCHHHHHHHHHHHHHHHHccCCCEEEEcchhhCC---------------------
Confidence 134432 699999999999999999999999999999999999883
Q ss_pred CCchHHHHHHHHHHHHHh-hCCCeEEEEEccCCCCCC
Q psy9003 1155 VDTDALIYLMVANKFLHD-KYPEIITIAEDVSGMPAS 1190 (1276)
Q Consensus 1155 ~d~~a~~Fl~el~~~Vr~-~~PdvilIAE~~s~~p~~ 1190 (1276)
.+||+++++.+++ ..|++++|||.|...+..
T Consensus 238 -----~~f~~~~~~~~~~~~~~~~~~igE~~~~~~~~ 269 (480)
T 1ud2_A 238 -----FWYTSDWVRHQRNEADQDLFVVGEYWKDDVGA 269 (480)
T ss_dssp -----HHHHHHHHHHHHHHCSSCCEEEECCCCSCHHH
T ss_pred -----HHHHHHHHHHHHHhcCCCcEEEEeccCCCHHH
Confidence 2489999999998 789999999999876543
|
| >1hvx_A Alpha-amylase; hydrolase, glycosyltransferase, thermostability; 2.00A {Geobacillus stearothermophilus} SCOP: b.71.1.1 c.1.8.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=8.1e-32 Score=321.52 Aligned_cols=208 Identities=20% Similarity=0.264 Sum_probs=156.5
Q ss_pred CCCceEEEEecCCccccCccCcHHHHHHhhhhHHHHcCCCCCccceeecccccccccccccceeeccCcccccccccccc
Q psy9003 893 PDNLKIYESHVGICTQEQKCASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAE 972 (1276)
Q Consensus 893 ~~d~vIYElHVr~ft~~~~~Gtf~gl~ek~LdyLK~LGVna~d~wV~LmP~f~~eew~~~~pi~~l~~~Pi~E~~i~~~~ 972 (1276)
..+.+||+++.+.+.+ ..|+|+|++++ |||||+||||+ |||||++ +. +
T Consensus 3 ~~~~v~~q~F~W~~~~--~gG~~~gi~~~-LdyLk~LGvt~----IwL~Pi~--------------------~~--~--- 50 (515)
T 1hvx_A 3 PFNGTMMQYFEWYLPD--DGTLWTKVANE-ANNLSSLGITA----LWLPPAY--------------------KG--T--- 50 (515)
T ss_dssp CCCCCEEECCCTTCCS--SSCHHHHHHHH-HHHHHHTTCCE----EEECCCS--------------------EE--S---
T ss_pred CCCceEEEEEEccCCC--CCCcHHHHHHH-HHHHHhcCCCE----EEeCCcc--------------------cC--C---
Confidence 3567999999988765 45999999996 99999999999 9999544 32 1
Q ss_pred CCCcccCCCccccccccccccccccCCCCCCcccccccccccCCCCCccccccccccCCCCCCHHHHHHHHHHHHHcCCE
Q psy9003 973 SHDQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLY 1052 (1276)
Q Consensus 973 S~~~~~WGYdp~nyf~~d~~~y~~~S~~~Dp~~~~dap~~~yas~s~hkYt~D~~~ID~~~Gt~eEfK~LV~alHk~GI~ 1052 (1276)
+ ..+|||++.|||.+ . .|... -+|||+||+.+|||+||++||++||+
T Consensus 51 ~--~~~~GY~~~dy~~l---------------------~-~f~~~---------~~idp~~Gt~~dfk~Lv~~aH~~Gi~ 97 (515)
T 1hvx_A 51 S--RSDVGYGVYDLYDL---------------------G-EFNQK---------GAVRTKYGTKAQYLQAIQAAHAAGMQ 97 (515)
T ss_dssp S--TTCCSSSEEETTCS---------------------S-CSCBT---------TBSSCSSCCHHHHHHHHHHHHHTTCE
T ss_pred C--CCCCCcCeeccccc---------------------c-ccccc---------CccCCCCCCHHHHHHHHHHHHHCCCE
Confidence 1 14699999999922 1 11100 13779999999999999999999999
Q ss_pred EEEEEeccccCC--cccCCC------------------------cCCCCCCCc-------cccc-C-----C--------
Q psy9003 1053 VLLDVVHSHASK--NVLDGL------------------------NEFDGTQAC-------FFHD-G-----P-------- 1085 (1276)
Q Consensus 1053 VILDvV~NHt~~--~~~~~~------------------------~~f~g~~~~-------Yy~~-~-----~-------- 1085 (1276)
||||+|+||++. .+.|+. ..|.|..+. ||+. + +
T Consensus 98 VilD~V~NH~~~~d~~~~f~~~~~~~~~~~~~~g~~~~~~~~~~~~~pg~~~~y~~~~~~~~~~~~~d~~~~~~~~~~~~ 177 (515)
T 1hvx_A 98 VYADVVFDHKGGADGTEWVDAVEVNPSDRNQEISGTYQIQAWTKFDFPGRGNTYSSFKWRWYHFDGVDWDESRKLSRIYK 177 (515)
T ss_dssp EEEEECCSEECCCSEEEEEEEEEEETTEEEEECSCCEEEEEEEEBCCTTTTTSSCCCCBCGGGEEEEEEETTTTEEEEEE
T ss_pred EEEEEecCCccCCCcccceeEEEecCcccccccccccccccccccccCCCCCccccCcccccccCCCCcccccccccccc
Confidence 999999999974 332211 112332211 2221 0 0
Q ss_pred -CCCCCCCCC--------------cCCCCCcHHHHHHHHHHHHHHHHhCCCcEEccCCccccccccCCCCCCCCCCCccc
Q psy9003 1086 -RGTHPLWDS--------------RLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEY 1150 (1276)
Q Consensus 1086 -~g~~~~W~g--------------~~LN~~np~Vr~~Iidsl~~Wv~eygVDGFRfD~a~~L~~~d~g~g~~~~~~~~~~ 1150 (1276)
.|....|.+ ++||++||+||++|+++++||++++||||||+|++.+|.
T Consensus 178 ~~g~~~~W~~~~~~~~~~~~~~~~~dLn~~np~V~~~l~~~~~~w~~~~gvDGfRlDaa~~i~----------------- 240 (515)
T 1hvx_A 178 FRGIGKAWDWEVDTENGNYDYLMYADLDMDHPEVVTELKSWGKWYVNTTNIDGFRLDAVKHIK----------------- 240 (515)
T ss_dssp ECSTTCCCCSSCCCTTSCCCCCSSEEECTTCHHHHHHHHHHHHHHHHHHCCCEEEETTGGGSC-----------------
T ss_pred ccCCCCCcccccccccCccccccCCccCCCCHHHHHHHHHHHHHHHHhcCCCEEEEehhhhcC-----------------
Confidence 012344542 789999999999999999999999999999999999883
Q ss_pred cCCCCCchHHHHHHHHHHHHHh-hCCCeEEEEEccCCCCCCc
Q psy9003 1151 FGLNVDTDALIYLMVANKFLHD-KYPEIITIAEDVSGMPASC 1191 (1276)
Q Consensus 1151 ~~~~~d~~a~~Fl~el~~~Vr~-~~PdvilIAE~~s~~p~~~ 1191 (1276)
..||+++++.+++ ..|++++|||.|...+..+
T Consensus 241 ---------~~f~~~~~~~v~~~~~~~~~~igE~~~~~~~~~ 273 (515)
T 1hvx_A 241 ---------FSFFPDWLSYVRSQTGKPLFTVGEYWSYDINKL 273 (515)
T ss_dssp ---------TTHHHHHHHHHHHHHCCCCEEEECCCCSCHHHH
T ss_pred ---------HHHHHHHHHHHHhhcCCCcEEEEEecCCChHHH
Confidence 1389999999988 6899999999998766543
|
| >1g5a_A Amylosucrase; glycosyltransferase, glycoside hydrolase, (beta-alpha)8 barrel; HET: EPE; 1.40A {Neisseria polysaccharea} SCOP: b.71.1.1 c.1.8.1 PDB: 1jg9_A* 1mw1_A* 1mw2_A* 1mw3_A* 3ueq_A* 1jgi_A* 1mvy_A* 1mw0_A* 1s46_A* 1zs2_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=8.1e-32 Score=329.12 Aligned_cols=202 Identities=17% Similarity=0.212 Sum_probs=156.0
Q ss_pred CceEEEEecCCccccCccCcHHHHHHhhhhHHHHcCCCCCccceeecccccccccccccceeeccCccccccccccccCC
Q psy9003 895 NLKIYESHVGICTQEQKCASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAESH 974 (1276)
Q Consensus 895 d~vIYElHVr~ft~~~~~Gtf~gl~ek~LdyLK~LGVna~d~wV~LmP~f~~eew~~~~pi~~l~~~Pi~E~~i~~~~S~ 974 (1276)
+++|||+|+++|. |+|+|++++ |||||+||||+ |||||+|+ . + .
T Consensus 97 ~~viY~~~~~~f~-----Gdl~gi~~~-LdyL~~LGv~~----I~L~Pi~~--------------------~--~-~--- 140 (628)
T 1g5a_A 97 KQVGGVCYVDLFA-----GDLKGLKDK-IPYFQELGLTY----LHLMPLFK--------------------C--P-E--- 140 (628)
T ss_dssp TCCEEEECHHHHH-----SSHHHHHTT-HHHHHHHTCSE----EEECCCBC--------------------C--C-S---
T ss_pred CcEEEEEchhhhC-----CCHHHHHHH-HHHHHHcCCCE----EEeCCCCC--------------------C--C-C---
Confidence 4899999999995 999999996 89999999999 99995553 2 1 1
Q ss_pred CcccCCCccccccccccccccccCCCCCCcccccccccccCCCCCccccccccccCCCCCCHHHHHHHHHHHHHcCCEEE
Q psy9003 975 DQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLYVL 1054 (1276)
Q Consensus 975 ~~~~WGYdp~nyf~~d~~~y~~~S~~~Dp~~~~dap~~~yas~s~hkYt~D~~~ID~~~Gt~eEfK~LV~alHk~GI~VI 1054 (1276)
...+|||++.||+ +++ |+||+.+||++||++||++||+||
T Consensus 141 ~~~~~GY~v~dy~---------------------~vd-------------------p~~Gt~~d~~~Lv~~ah~~GI~Vi 180 (628)
T 1g5a_A 141 GKSDGGYAVSSYR---------------------DVN-------------------PALGTIGDLREVIAALHEAGISAV 180 (628)
T ss_dssp SCSTTTTSCSCSS---------------------SBC-------------------TTTCCHHHHHHHHHHHHHTTCEEE
T ss_pred CCCCCCcCCcccC---------------------CcC-------------------ccCCCHHHHHHHHHHHHHCCCEEE
Confidence 1246999999998 444 999999999999999999999999
Q ss_pred EEEeccccCCcccCCCcCCCCCC--CcccccCCCC-----------------CCCC--------C--C-----CcCCCCC
Q psy9003 1055 LDVVHSHASKNVLDGLNEFDGTQ--ACFFHDGPRG-----------------THPL--------W--D-----SRLFNYS 1100 (1276)
Q Consensus 1055 LDvV~NHt~~~~~~~~~~f~g~~--~~Yy~~~~~g-----------------~~~~--------W--~-----g~~LN~~ 1100 (1276)
||+|+|||+.+++|+...+.+.. ..||...+++ ...+ | . .++||++
T Consensus 181 lD~V~NH~s~~~~wf~~~~~g~~~y~d~y~~~~~~~~P~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~f~~~~pdLN~~ 260 (628)
T 1g5a_A 181 VDFIFNHTSNEHEWAQRCAAGDPLFDNFYYIFPDRRMPDQYDRTLREIFPDQHPGGFSQLEDGRWVWTTFNSFQWDLNYS 260 (628)
T ss_dssp EEECCSEEETTSHHHHHHHTTCGGGTTSBCEESSSHHHHHHTTTCCCSSTTTCSTTEEECTTSCEEECSSSTTEEEBCTT
T ss_pred EEEecCcccccchhHHHHhcCCCccccccccCCCCCCcccccccccccCCCCCCCccccCCCCCEEeccCCCCCCccCCC
Confidence 99999999999876543333322 2344221100 0011 1 1 2589999
Q ss_pred cHHHHHHHHHHHHHHHHhCCCcEEccCCccccccccCCCCCCCCCCCccccCCCCC-chHHHHHHHHHHHHHhhCCCeEE
Q psy9003 1101 EIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVD-TDALIYLMVANKFLHDKYPEIIT 1179 (1276)
Q Consensus 1101 np~Vr~~Iidsl~~Wv~eygVDGFRfD~a~~L~~~d~g~g~~~~~~~~~~~~~~~d-~~a~~Fl~el~~~Vr~~~Pdvil 1179 (1276)
||+||++|+++++||+ ++||||||||++.+|... . +.. ..+ ++...||+++++.+++.+|++++
T Consensus 261 np~V~~~i~~~l~~w~-~~GvDGfRlDa~~~i~k~-~--g~~-----------~~~~p~~~~~~~~~r~~~~~~~p~~~~ 325 (628)
T 1g5a_A 261 NPWVFRAMAGEMLFLA-NLGVDILRMDAVAFIWKQ-M--GTS-----------CENLPQAHALIRAFNAVMRIAAPAVFF 325 (628)
T ss_dssp SHHHHHHHHHHHHHHH-TTTCSEEEETTGGGSCCC-T--TSC-----------SSSCHHHHHHHHHHHHHHHHHCTTCEE
T ss_pred CHHHHHHHHHHHHHHH-HcCCCEEEEecccccccc-c--Ccc-----------ccCcHHHHHHHHHHHHHHHHhCCCeEE
Confidence 9999999999999999 599999999999988421 1 110 112 35678999999999999999999
Q ss_pred EEEccCCC
Q psy9003 1180 IAEDVSGM 1187 (1276)
Q Consensus 1180 IAE~~s~~ 1187 (1276)
|||.|...
T Consensus 326 igE~~~~~ 333 (628)
T 1g5a_A 326 KSEAIVHP 333 (628)
T ss_dssp EECCCSCH
T ss_pred EEEecCCH
Confidence 99998643
|
| >1mxg_A Alpha amylase; hyperthermostable, family 13 glycosyl hydrola (beta/alpha)8-barrel, hydrolase; HET: ACR ETE; 1.60A {Pyrococcus woesei} SCOP: b.71.1.1 c.1.8.1 PDB: 1mwo_A* 1mxd_A* 3qgv_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2e-31 Score=312.14 Aligned_cols=215 Identities=18% Similarity=0.162 Sum_probs=155.7
Q ss_pred CCceEEEEecCCccccCccCc-HHHHHHhhhhHHHHcCCCCCccceeecccccccccccccceeeccCcccccccccccc
Q psy9003 894 DNLKIYESHVGICTQEQKCAS-YEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAE 972 (1276)
Q Consensus 894 ~d~vIYElHVr~ft~~~~~Gt-f~gl~ek~LdyLK~LGVna~d~wV~LmP~f~~eew~~~~pi~~l~~~Pi~E~~i~~~~ 972 (1276)
.+.+|||++++.|++ .|+ |+|++++ |||||+||||+ |||||+++ . +
T Consensus 8 ~~~viyq~f~w~~~~---~G~~~~gi~~~-Ldyl~~lGvt~----I~l~Pi~~--------------------~--~--- 54 (435)
T 1mxg_A 8 EGGVIMQAFYWDVPG---GGIWWDHIRSK-IPEWYEAGISA----IWLPPPSK--------------------G--M--- 54 (435)
T ss_dssp GTCCEEECCCTTCCC---SSCHHHHHHHH-HHHHHHHTCCE----EECCCCSE--------------------E--T---
T ss_pred CCcEEEEEEEeccCC---CCCHHHHHHHH-HHHHHHcCCCE----EEeCCccc--------------------C--C---
Confidence 468999999999965 489 9999996 99999999999 99995543 2 1
Q ss_pred CCCcccCCCccccccccccccccccCCCCCCcccccccccccCCCCCccccccccccCCCCCCHHHHHHHHHHHHHcCCE
Q psy9003 973 SHDQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLY 1052 (1276)
Q Consensus 973 S~~~~~WGYdp~nyf~~d~~~y~~~S~~~Dp~~~~dap~~~yas~s~hkYt~D~~~ID~~~Gt~eEfK~LV~alHk~GI~ 1052 (1276)
+ +.++|||+|.||| ++ ++|.+. .+|||+||+.+|||+||++||++||+
T Consensus 55 ~-~~~~~gY~~~dy~---------------------~l-g~~~~~---------~~id~~~Gt~~df~~lv~~~H~~Gi~ 102 (435)
T 1mxg_A 55 S-GGYSMGYDPYDYF---------------------DL-GEYYQK---------GTVETRFGSKEELVRLIQTAHAYGIK 102 (435)
T ss_dssp T-GGGCCSSSEEETT---------------------CS-SCSCBT---------TBSSCSSCCHHHHHHHHHHHHHTTCE
T ss_pred C-CCCCCCcCccccc---------------------cc-cccccc---------CcCCCCCCCHHHHHHHHHHHHHCCCE
Confidence 0 1246999999999 33 234332 14679999999999999999999999
Q ss_pred EEEEEeccccCCcccCC--------CcCCCCCCC-----cccccCCCCCCCC-----C-CCcCCCCCcHHHHHHH----H
Q psy9003 1053 VLLDVVHSHASKNVLDG--------LNEFDGTQA-----CFFHDGPRGTHPL-----W-DSRLFNYSEIEVLRFL----L 1109 (1276)
Q Consensus 1053 VILDvV~NHt~~~~~~~--------~~~f~g~~~-----~Yy~~~~~g~~~~-----W-~g~~LN~~np~Vr~~I----i 1109 (1276)
||||+|+||++.++.+. ...|+...+ .|....+.. ... | +.++||++||+||++| .
T Consensus 103 VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~-~~~~~~g~~~~~~dln~~np~V~~~l~~~~~ 181 (435)
T 1mxg_A 103 VIADVVINHRAGGDLEWNPFVGDYTWTDFSKVASGKYTANYLDFHPNE-LHCCDEGTFGGFPDICHHKEWDQYWLWKSNE 181 (435)
T ss_dssp EEEEECCSBCCCCEEEEETTTTEEEEEECTTCTTCCSCCCGGGBSSSS-SCSCCSCCCTTSCBBCTTSHHHHHHHTSSTT
T ss_pred EEEEECcccccCCCcccCCCCCccccccCCCccCCCCccccccCCCCC-cCccCCCcccCccccCCCCHHHHHHHHHHHH
Confidence 99999999999875321 011222111 111111111 111 1 2489999999999666 6
Q ss_pred HHHHHHHHhCCCcEEccCCccccccccCCCCCCCCCCCccccCCCCCchHHHHHHHHHHHHHhhCCCeEEEEEccCCCCC
Q psy9003 1110 SNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPA 1189 (1276)
Q Consensus 1110 dsl~~Wv~eygVDGFRfD~a~~L~~~d~g~g~~~~~~~~~~~~~~~d~~a~~Fl~el~~~Vr~~~PdvilIAE~~s~~p~ 1189 (1276)
++++||++ +||||||||++.+|. ..||+++++.+ ++++|||.|...+.
T Consensus 182 ~~~~~w~~-~gvDGfR~Da~~~i~--------------------------~~f~~~~~~~~-----~~~~vgE~~~~~~~ 229 (435)
T 1mxg_A 182 SYAAYLRS-IGFDGWRFDYVKGYG--------------------------AWVVRDWLNWW-----GGWAVGEYWDTNVD 229 (435)
T ss_dssp SHHHHHHH-TTCCEEEETTGGGSC--------------------------HHHHHHHHHHH-----CCCEEECCCCSCHH
T ss_pred HHHHHHHH-CCCCEEEhhhhhhcc--------------------------HHHHHHHHHhc-----CceEEEccccCChH
Confidence 89999998 999999999999872 35898888653 58899999988765
Q ss_pred Ccccccc--CCcccCcccC
Q psy9003 1190 SCRPVTE--GGTGFDYRLV 1206 (1276)
Q Consensus 1190 ~~~p~~~--gglGFD~~~n 1206 (1276)
...++.. +..+|||.+.
T Consensus 230 ~~~~~~~~~~~~~fd~~~~ 248 (435)
T 1mxg_A 230 ALLSWAYESGAKVFDFPLY 248 (435)
T ss_dssp HHHHHHHHHTSEEECHHHH
T ss_pred HHHhhhccCCCceeehHHH
Confidence 4434432 2466777644
|
| >2dh2_A 4F2 cell-surface antigen heavy chain; TIM-barrel, glycosidase like, antiparallel beta-sheet, greek terminal domain, extracellular domain; 2.10A {Homo sapiens} PDB: 2dh3_A | Back alignment and structure |
|---|
Probab=99.97 E-value=5.5e-31 Score=307.79 Aligned_cols=229 Identities=13% Similarity=0.124 Sum_probs=160.8
Q ss_pred CcCCCCC--CCCCCceEEEEe-cCCccccCccCcHHHHHHhhhhHHHHcCCCCCccceeecccccccccccccceeeccC
Q psy9003 884 KWTSSKP--KKPDNLKIYESH-VGICTQEQKCASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTN 960 (1276)
Q Consensus 884 ~W~~~rp--~~~~d~vIYElH-Vr~ft~~~~~Gtf~gl~ek~LdyLK~LGVna~d~wV~LmP~f~~eew~~~~pi~~l~~ 960 (1276)
.|....| .+|++++|||+| +|+|+ ....|+|+|++++ |||||+||||+ |||||+|+
T Consensus 2 ~~~~~~~~~~ww~~~viYqi~~~~sf~-gdg~Gdl~gi~~~-Ldyl~~LGv~~----i~l~Pi~~--------------- 60 (424)
T 2dh2_A 2 RWGSELPAQKWWHTGALYRIGDLQAFQ-GHGAGNLAGLKGR-LDYLSSLKVKG----LVLGPIHK--------------- 60 (424)
T ss_dssp --CCSCCCCCGGGSSCEEEECCHHHHH-CTTCCSHHHHHTT-HHHHHHTTCSE----EEECCCEE---------------
T ss_pred CCCCCCCcccccccCeEEEEcCccccC-CCCCCCHHHHHHH-HHHHHHcCCCE----EEECCCCC---------------
Confidence 3665544 356899999999 99998 5578999999996 99999999999 99995543
Q ss_pred ccccccccccccCCCcccCCCccccccccccccccccCCCCCCcccccccccccCCCCCccccccccccCCCCCCHHHHH
Q psy9003 961 RRYMEKTVAYAESHDQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLK 1040 (1276)
Q Consensus 961 ~Pi~E~~i~~~~S~~~~~WGYdp~nyf~~d~~~y~~~S~~~Dp~~~~dap~~~yas~s~hkYt~D~~~ID~~~Gt~eEfK 1040 (1276)
. + + .||++.||+ + |||+||+++||+
T Consensus 61 -----~--~---~-----~~y~~~dy~---------------------~-------------------idp~~Gt~~d~~ 85 (424)
T 2dh2_A 61 -----N--Q---K-----DDVAQTDLL---------------------Q-------------------IDPNFGSKEDFD 85 (424)
T ss_dssp -----E--C---T-----TCSTTEEEE---------------------E-------------------ECGGGCCHHHHH
T ss_pred -----C--C---C-----CCCCccccc---------------------c-------------------cCccCCCHHHHH
Confidence 2 1 1 367777777 3 448999999999
Q ss_pred HHHHHHHHcCCEEEEEEeccccCCcccCCCcCCCCCCCcccccCCCCCCCCCCCcCCCCCcHHHHHHHHHHHHHHHHhCC
Q psy9003 1041 YLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSNLRWYLDEYQ 1120 (1276)
Q Consensus 1041 ~LV~alHk~GI~VILDvV~NHt~~~~~~~~~~f~g~~~~Yy~~~~~g~~~~W~g~~LN~~np~Vr~~Iidsl~~Wv~eyg 1120 (1276)
+||++||++||+||||+|+||++ .++ ||. ..+|+||++|.++++||++ +|
T Consensus 86 ~lv~~ah~~Gi~vilD~V~NH~s-~~~------------wF~----------------~q~~~Vr~~~~~~~~~Wl~-~g 135 (424)
T 2dh2_A 86 SLLQSAKKKSIRVILDLTPNYRG-ENS------------WFS----------------TQVDTVATKVKDALEFWLQ-AG 135 (424)
T ss_dssp HHHHHHHHTTCEEEEECCTTTTS-SST------------TCS----------------SCHHHHHHHHHHHHHHHHH-HT
T ss_pred HHHHHHHHCCCEEEEEECCCcCC-Ccc------------ccc----------------ccCHHHHHHHHHHHHHHHH-cC
Confidence 99999999999999999999999 433 331 1358999999999999998 89
Q ss_pred CcEEccCCccccccccCCCCCCCCCCCccccCCCCCchHHHHHHHHHHHHHhhCCCeEEEEEccCCCCCCccccccC--C
Q psy9003 1121 FDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEG--G 1198 (1276)
Q Consensus 1121 VDGFRfD~a~~L~~~d~g~g~~~~~~~~~~~~~~~d~~a~~Fl~el~~~Vr~~~PdvilIAE~~s~~p~~~~p~~~g--g 1198 (1276)
|||||||++..+. +...||+++++.+++..|+.++|+|+....+.....+... +
T Consensus 136 vDGfRlD~v~~~~------------------------~~~~~~~~~~~~~~~~~~~~~~i~~e~~~~~~~~~~~~~~~~~ 191 (424)
T 2dh2_A 136 VDGFQVRDIENLK------------------------DASSFLAEWQNITKGFSEDRLLIAGTNSSDLQQILSLLESNKD 191 (424)
T ss_dssp CCEEEECCGGGST------------------------THHHHHHHHHHHHHHHCTTCEEEEECSCCCHHHHHHHTTTCTT
T ss_pred CCEEEEeccccCC------------------------ccHHHHHHHHHHHHHhCCCcEEEEEEecCCHHHHHHHhccccc
Confidence 9999999988762 1235899999999999998776665543322211111111 1
Q ss_pred cccCcccCCCccchhh-HHHHHHHHHHHHHhcccCCCCCeeEeecCCCeEEE
Q psy9003 1199 TGFDYRLVSLEGSALS-ALFDAAMNTTEERFKWLSADPGYVSTKHEGDKVII 1249 (1276)
Q Consensus 1199 lGFD~~~n~lEesaLS-~~F~~~Ln~l~~~~p~L~~~~~~~l~nHD~~RVls 1249 (1276)
..|++.+. ....++ ..+.+.+.++..... .++..+++ |++|+++
T Consensus 192 ~~~~f~~~--~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~---d~~r~~s 236 (424)
T 2dh2_A 192 LLLTSSYL--SDSGSTGEHTKSLVTQYLNATG--NRWCSWSL---SQARLLT 236 (424)
T ss_dssp CEEECSTT--TTCSSCHHHHHHHHHHHHHHHT--TCCCEECS---CSSCCGG
T ss_pred cccchhhh--cCCCCCHHHHHHHHHHHHHhhc--cCceeeee---cCcchhh
Confidence 22333222 100111 445666666665543 34444443 6777643
|
| >3aml_A OS06G0726400 protein; starch-branching, transferase; HET: EPE; 1.70A {Oryza sativa japonica group} PDB: 3amk_A | Back alignment and structure |
|---|
Probab=99.96 E-value=7.3e-30 Score=317.18 Aligned_cols=161 Identities=27% Similarity=0.388 Sum_probs=147.3
Q ss_pred cccccCCCCCccHHHHHHHHHHHHHHHHHHhhccCchHHhhHHHhhccceEecCCcEEEEEEccCCceEEEEeecc-CCC
Q psy9003 19 KLLERDPYLNPYQYEMKRRYGLMVNFLEQFEKHEGGIEKFTTSYNKYGIHVQADNSVRCFEWAPSAQQLYLTGNVS-LTP 97 (1276)
Q Consensus 19 ~l~~~dp~L~~~~~~~~~Ry~~~~~~~~~i~~~~ggl~~Fs~~y~~fGah~~~~gg~~f~~wAP~A~~v~l~gdfn-~~~ 97 (1276)
+|+++||||+||+++|++||.+|.++++.|++.+|+|++|+.+|+.||||+.. +||+|+||||+|++|+|+|||| |+.
T Consensus 12 ~~~~~~~~l~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~f~~~~~~lGa~~~~-~gv~F~vwAP~A~~V~l~gdfn~w~~ 90 (755)
T 3aml_A 12 PIYDLDPKLEEFKDHFNYRIKRYLDQKCLIEKHEGGLEEFSKGYLKFGINTVD-GATIYREWAPAAQEAQLIGEFNNWNG 90 (755)
T ss_dssp THHHHCGGGGGGHHHHHHHHHHHHHHHHHHHHHHSCHHHHTTGGGTSEEEEET-TEEEEEEECTTCSEEEEEEGGGTTCC
T ss_pred ceeccCCcchhhHHHHHHHHHHHHHHHHHHHhcCCcHHHHhhhhhcCceEEeC-CeEEEEEECCCCCEEEEEEecCCCCC
Confidence 89999999999999999999999999999999999999999999999999765 6799999999999999999995 433
Q ss_pred cc--e------EEEEEcc------CccccceEEEEEecCCC---------------CCCc-----cccccc---------
Q psy9003 98 WS--I------MEEASLS------SIKLIQSIQYILTGVFG---------------TPEQ-----LKYLVD--------- 134 (1276)
Q Consensus 98 w~--m------~~~~~~~------~~~~g~~yky~i~~~~g---------------rp~~-----as~~~d--------- 134 (1276)
-. | +|++||| +++.|+.|||+|.+++| +|.+ +|+|+|
T Consensus 91 ~~~~m~~~~~GvW~~~v~~~~g~~~i~~g~~Y~y~i~~~~g~~~~~~dpya~~~~~~~~~~~~~~~~~v~d~~~~~~~~w 170 (755)
T 3aml_A 91 AKHKMEKDKFGIWSIKISHVNGKPAIPHNSKVKFRFRHGGGAWVDRIPAWIRYATFDASKFGAPYDGVHWDPPACERYVF 170 (755)
T ss_dssp TTCBCEECTTSEEEEEEECBTTBCSSCTTEEEEEEEECTTCCCEEECCTTCSCEEECCSSSSCCEEEEECCCCGGGCCCC
T ss_pred ceeeceeCCCCEEEEEEcccccccCCCCCCEEEEEEECCCCcEEecCCcchheEeecccccCcccceEEECCcccccCCC
Confidence 22 6 9999999 48999999999998777 5776 367653
Q ss_pred --------------ccccccC------CChHHHHHHHHHHHHhcCc------------------------------CCCH
Q psy9003 135 --------------ECHKAGL------FGTPEQLKYLVDECHKAGL------------------------------FGTP 164 (1276)
Q Consensus 135 --------------e~h~gs~------~~y~e~a~~li~y~~~~~y------------------------------ygtp 164 (1276)
|+|+||| -+|++|+++++||+|++|+ ||||
T Consensus 171 ~~~~~~~~~~~~IYE~hv~~~~~~~~~Gt~~~l~~~~L~yLk~LGvt~I~L~Pi~e~~~~~~~GY~~~dy~a~~~~~Gt~ 250 (755)
T 3aml_A 171 KHPRPPKPDAPRIYEAHVGMSGEEPEVSTYREFADNVLPRIRANNYNTVQLMAIMEHSYYASFGYHVTNFFAVSSRSGTP 250 (755)
T ss_dssp CSCCCCCCSSCEEEEEESTTCSSSSSCCCHHHHHHHTHHHHHHTTCCEEEEESCEECSCGGGTTCSCSEEEEECGGGCCH
T ss_pred CCcCCCCCCCCEEEEEeeeccccCCCCCCHHHHHHHHHHHHHHcCCCEEEECchhcCCCCCCCCCccCCCCccCCCCCCH
Confidence 9999996 7999999999999999998 9999
Q ss_pred HHHHHHHHHHHHcCCC
Q psy9003 165 EQLKYLVDECHKAGLF 180 (1276)
Q Consensus 165 ~~l~~~vd~~h~~~i~ 180 (1276)
+||+.||++||++||+
T Consensus 251 ~df~~lv~~~H~~Gi~ 266 (755)
T 3aml_A 251 EDLKYLVDKAHSLGLR 266 (755)
T ss_dssp HHHHHHHHHHHHTTCE
T ss_pred HHHHHHHHHHHHCCCE
Confidence 9999999999999998
|
| >1ht6_A AMY1, alpha-amylase isozyme 1; barley, beta-alpha-barrel, hydrolase; 1.50A {Hordeum vulgare} SCOP: b.71.1.1 c.1.8.1 PDB: 1p6w_A* 1rpk_A* 3bsg_A 2qpu_A* 1rp8_A* 1rp9_A* 2qps_A 3bsh_A* 1ava_A 1amy_A 1bg9_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=4.4e-29 Score=289.51 Aligned_cols=183 Identities=17% Similarity=0.157 Sum_probs=137.7
Q ss_pred EecCCc---cccCccCcHHHHHHhhhhHHHHcCCCCCccceeecccccccccccccceeeccCccccccccccccCCCcc
Q psy9003 901 SHVGIC---TQEQKCASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAESHDQA 977 (1276)
Q Consensus 901 lHVr~f---t~~~~~Gtf~gl~ek~LdyLK~LGVna~d~wV~LmP~f~~eew~~~~pi~~l~~~Pi~E~~i~~~~S~~~~ 977 (1276)
+.+++| ++....|+|+|++++ |||||+||||+ |||||++ +. + .
T Consensus 3 v~~~~F~~d~~~d~~G~~~gi~~~-ldyl~~lGv~~----i~l~Pi~--------------------~~--~-------~ 48 (405)
T 1ht6_A 3 VLFQGFNWESWKQSGGWYNMMMGK-VDDIAAAGVTH----VWLPPPS--------------------HS--V-------S 48 (405)
T ss_dssp CEEECCCTTGGGCTTCHHHHHHTT-HHHHHHTTCCE----EEECCCS--------------------CB--S-------S
T ss_pred cEEEeEEcCCCCCCCcCHHHHHHH-HHHHHHcCCCE----EEeCCCc--------------------cC--C-------C
Confidence 456778 235568999999986 99999999999 9999444 32 1 2
Q ss_pred cCCCccccccccccccccccCCCCCCcccccccccccCCCCCccccccccccC-CCCCCHHHHHHHHHHHHHcCCEEEEE
Q psy9003 978 LVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKA-GLFGTPEQLKYLVDECHKAGLYVLLD 1056 (1276)
Q Consensus 978 ~WGYdp~nyf~~d~~~y~~~S~~~Dp~~~~dap~~~yas~s~hkYt~D~~~ID-~~~Gt~eEfK~LV~alHk~GI~VILD 1056 (1276)
+|||+|.||| +|| |+||+.+|||+||++||++||+||||
T Consensus 49 ~~gY~~~d~~----------------------------------------~id~~~~Gt~~d~~~lv~~~h~~Gi~VilD 88 (405)
T 1ht6_A 49 NEGYMPGRLY----------------------------------------DIDASKYGNAAELKSLIGALHGKGVQAIAD 88 (405)
T ss_dssp TTSSSBCCTT----------------------------------------CGGGCTTCCHHHHHHHHHHHHHTTCEEEEE
T ss_pred CCCCCccccc----------------------------------------cCCCccCCCHHHHHHHHHHHHHCCCEEEEE
Confidence 4899999888 245 88999999999999999999999999
Q ss_pred EeccccCCcccCC---CcCCCCCC----Cccc---ccCCC-------CCCCCC----CCcCCCCCcHHHHHHHHHHHHHH
Q psy9003 1057 VVHSHASKNVLDG---LNEFDGTQ----ACFF---HDGPR-------GTHPLW----DSRLFNYSEIEVLRFLLSNLRWY 1115 (1276)
Q Consensus 1057 vV~NHt~~~~~~~---~~~f~g~~----~~Yy---~~~~~-------g~~~~W----~g~~LN~~np~Vr~~Iidsl~~W 1115 (1276)
+|+||++.+++.. ...|++.. ..|. ...+. +.+..| +.++||+++|+||++|++++++|
T Consensus 89 ~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~p~v~~~i~~~~~~w 168 (405)
T 1ht6_A 89 IVINHRCADYKDSRGIYCIFEGGTSDGRLDWGPHMICRDDTKYSDGTANLDTGADFAAAPDIDHLNDRVQRELKEWLLWL 168 (405)
T ss_dssp ECCSBCCCSEECTTSCEEECCCSSSSSTTCCCGGGBCTTCTTTCCSCSCCCSSCCCTTSCBBCTTCHHHHHHHHHHHHHH
T ss_pred ECcCcccCCCCCCCCCcccCCCCCcCCCCCCCCccccCCCCCcCCCCCcccCCCCcCcCCccCcCCHHHHHHHHHHHHHH
Confidence 9999999886521 11243321 1121 11111 111111 15899999999999999999999
Q ss_pred HHhCCCcEEccCCccccccccCCCCCCCCCCCccccCCCCCchHHHHHHHHHHHHHhhCCCeEEEEEccCCC
Q psy9003 1116 LDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGM 1187 (1276)
Q Consensus 1116 v~eygVDGFRfD~a~~L~~~d~g~g~~~~~~~~~~~~~~~d~~a~~Fl~el~~~Vr~~~PdvilIAE~~s~~ 1187 (1276)
+++|||||||||++.+|. .+||+++.+ +.+| .++|||.|...
T Consensus 169 ~~~~gvDGfR~D~~~~~~--------------------------~~f~~~~~~---~~~p-~~~igE~~~~~ 210 (405)
T 1ht6_A 169 KSDLGFDAWRLDFARGYS--------------------------PEMAKVYID---GTSP-SLAVAEVWDNM 210 (405)
T ss_dssp HHHHCCCEEEETTGGGSC--------------------------HHHHHHHHH---HHCC-SCEEECCCCCC
T ss_pred HhccCCCEEEEeccccCC--------------------------HHHHHHHHH---hhCC-ceEEEEeccCC
Confidence 999999999999999872 247877654 4577 57899998753
|
| >1gcy_A Glucan 1,4-alpha-maltotetrahydrolase; beta-alpha-barrel, beta sheet; 1.60A {Pseudomonas stutzeri} SCOP: b.71.1.1 c.1.8.1 PDB: 1jdc_A* 1jda_A* 1jdd_A* 1qi5_A* 1qi3_A* 1qi4_A* 2amg_A 1qpk_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=6.6e-29 Score=297.39 Aligned_cols=198 Identities=16% Similarity=0.138 Sum_probs=147.5
Q ss_pred CCceEEEEecCCccccCccCcH-HHHHHhhhhHHHHcCCCCCccceeecccccccccccccceeeccCcccccccccccc
Q psy9003 894 DNLKIYESHVGICTQEQKCASY-EDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAE 972 (1276)
Q Consensus 894 ~d~vIYElHVr~ft~~~~~Gtf-~gl~ek~LdyLK~LGVna~d~wV~LmP~f~~eew~~~~pi~~l~~~Pi~E~~i~~~~ 972 (1276)
.+.+||+++.+.+... ..|+| +|++++ |||||+||||+ |||||+++..+.. . +. +
T Consensus 15 ~~~vi~q~F~w~~~~~-~gGd~~~gi~~~-LdyLk~LGvt~----IwL~Pi~e~~~~~-----------~--~~-----~ 70 (527)
T 1gcy_A 15 GDEIILQGFHWNVVRE-APNDWYNILRQQ-AATIAADGFSA----IWMPVPWRDFSSW-----------S--DG-----S 70 (527)
T ss_dssp GCCCEEECCCTTHHHH-STTTHHHHHHHH-HHHHHHTTCSE----EEECCCSCCCCCB-----------C----------
T ss_pred CCcEEEEEEEcCCCcc-cCCcHHHHHHHH-HHHHHhcCCCE----EEeCCcccccccc-----------c--cC-----C
Confidence 4679999988765432 24999 999986 99999999999 9999877631100 0 00 0
Q ss_pred CCCcccCCCccccccccccccccccCCCCCCcccccccccccCCCCCccccccccccC--CCCCCHHHHHHHHHHHHHcC
Q psy9003 973 SHDQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKA--GLFGTPEQLKYLVDECHKAG 1050 (1276)
Q Consensus 973 S~~~~~WGYdp~nyf~~d~~~y~~~S~~~Dp~~~~dap~~~yas~s~hkYt~D~~~ID--~~~Gt~eEfK~LV~alHk~G 1050 (1276)
....+|||+ || +|| |+||+++|||+||++||++|
T Consensus 71 -~~~~~~GY~---~~----------------------------------------~id~~p~~Gt~~dfk~Lv~~aH~~G 106 (527)
T 1gcy_A 71 -KSGGGEGYF---WH----------------------------------------DFNKNGRYGSDAQLRQAASALGGAG 106 (527)
T ss_dssp -CCBCCSSTT---CS----------------------------------------SSCSCSSSCCHHHHHHHHHHHHHTT
T ss_pred -CCCCCCCcc---cc----------------------------------------cCCCCCCCCCHHHHHHHHHHHHHCC
Confidence 113578888 66 244 89999999999999999999
Q ss_pred CEEEEEEeccccCCcccCCCcCCCCCCCcccccC--CC----CCCC---CC--CCcCCCCCcHHHHHHHHHHHHHHHHhC
Q psy9003 1051 LYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDG--PR----GTHP---LW--DSRLFNYSEIEVLRFLLSNLRWYLDEY 1119 (1276)
Q Consensus 1051 I~VILDvV~NHt~~~~~~~~~~f~g~~~~Yy~~~--~~----g~~~---~W--~g~~LN~~np~Vr~~Iidsl~~Wv~ey 1119 (1276)
|+||||+|+||++.+++.+....+. .+.||+.. ++ +.+. .| +.++||++||+||++|+++++||++||
T Consensus 107 I~VilD~V~NHt~~~~~~~~~~~~~-~~~y~~~~~~~~~~~~~~~~~~~~f~~~~~dLn~~np~Vr~~i~~~~~~w~~~~ 185 (527)
T 1gcy_A 107 VKVLYDVVPNHMNRGYPDKEINLPA-GQGFWRNDCADPGNYPNDCDDGDRFIGGDADLNTGHPQVYGMFRDEFTNLRSQY 185 (527)
T ss_dssp CEEEEEECCSBCCTTCSSCSCCCCS-SSSCBGGGSCCCSSSCBTTBSSCCSTTSTTBBCTTSHHHHHHHHHHHHHHHHHS
T ss_pred CEEEEEEeecCcCCCCCCccccCCC-cchhcccccCCCCCcccCcccCccccccCCccccCCHHHHHHHHHHHHHHHHhc
Confidence 9999999999999987621111111 12344321 11 1111 12 358999999999999999999999999
Q ss_pred CCcEEccCCccccccccCCCCCCCCCCCccccCCCCCchHHHHHHHHHHHHHhhCCCeEEEEEccCCCCC
Q psy9003 1120 QFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPA 1189 (1276)
Q Consensus 1120 gVDGFRfD~a~~L~~~d~g~g~~~~~~~~~~~~~~~d~~a~~Fl~el~~~Vr~~~PdvilIAE~~s~~p~ 1189 (1276)
||||||||++.+|. ..||+++++.++ +| +++|||.|...+.
T Consensus 186 gvDGfRlDa~~~i~--------------------------~~f~~~~~~~~~--~p-~~~vgE~~~~~~~ 226 (527)
T 1gcy_A 186 GAGGFRFDFVRGYA--------------------------PERVNSWMTDSA--DN-SFCVGELWKGPSE 226 (527)
T ss_dssp CEEEEEESCGGGSC--------------------------HHHHHHHHHHHC--TT-SEEEECCCCCGGG
T ss_pred CCCeEEEeccccCC--------------------------HHHHHHHHHHhc--CC-ceEEEEecCCCCc
Confidence 99999999999882 248999988886 57 8899999976543
|
| >1g94_A Alpha-amylase; beta-alpha-8-barrel, 3 domain structure, hydrolase; HET: DAF GLC; 1.74A {Pseudoalteromonas haloplanktis} SCOP: b.71.1.1 c.1.8.1 PDB: 1g9h_A* 1l0p_A 1aqm_A* 1aqh_A* 1b0i_A 1jd7_A 1jd9_A 1kxh_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=2.6e-29 Score=294.78 Aligned_cols=175 Identities=14% Similarity=0.153 Sum_probs=130.5
Q ss_pred CcHHHHHHhhhhHHHHcCCCCCccceeecccccccccccccceeeccCccccccccccccCCCcccCCCccccccccccc
Q psy9003 913 ASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAESHDQALVGDKTIAFWLMDKE 992 (1276)
Q Consensus 913 Gtf~gl~ek~LdyLK~LGVna~d~wV~LmP~f~~eew~~~~pi~~l~~~Pi~E~~i~~~~S~~~~~WGYdp~nyf~~d~~ 992 (1276)
++|+|++++.|||||+||||+ |||||+|+ . +. + ...+|||+|.+ |
T Consensus 11 w~~~gi~~~lldyL~~LGv~~----I~l~Pi~~--------------------~--~~-~--~~~~~gY~~~~-y----- 55 (448)
T 1g94_A 11 WNWQDVAQECEQYLGPKGYAA----VQVSPPNE--------------------H--IT-G--SQWWTRYQPVS-Y----- 55 (448)
T ss_dssp CCHHHHHHHHHHTHHHHTCCE----EEECCCSC--------------------B--BC-S--SSGGGGGSBSC-S-----
T ss_pred CcHHHHHHHHHHHHHHcCCCE----EEECCccc--------------------c--CC-C--CCCcccccccc-c-----
Confidence 569999997679999999999 99996554 2 10 1 12345888764 3
Q ss_pred cccccCCCCCCcccccccccccCCCCCccccccccccCCCCCCHHHHHHHHHHHHHcCCEEEEEEeccccCCcccCCC--
Q psy9003 993 MYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGL-- 1070 (1276)
Q Consensus 993 ~y~~~S~~~Dp~~~~dap~~~yas~s~hkYt~D~~~ID~~~Gt~eEfK~LV~alHk~GI~VILDvV~NHt~~~~~~~~-- 1070 (1276)
+|||+||+++|||+||++||++||+||||+|+|||+.++..+.
T Consensus 56 -----------------------------------~idp~~Gt~~dfk~Lv~~aH~~Gi~VilD~V~NH~~~~~~~~~~~ 100 (448)
T 1g94_A 56 -----------------------------------ELQSRGGNRAQFIDMVNRCSAAGVDIYVDTLINHMAAGSGTGTAG 100 (448)
T ss_dssp -----------------------------------CSCBTTBCHHHHHHHHHHHHHTTCEEEEEEECSEECSSCEEBTTS
T ss_pred -----------------------------------ccCCCCCCHHHHHHHHHHHHHCCCEEEEEEeeccccCCCCCCCCC
Confidence 2458999999999999999999999999999999998863111
Q ss_pred cCCCC-----CCCcccccCCCCCCC--CC-------------CCcCCCCCcHHHHHHHHHHHHHHHHhCCCcEEccCCcc
Q psy9003 1071 NEFDG-----TQACFFHDGPRGTHP--LW-------------DSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVT 1130 (1276)
Q Consensus 1071 ~~f~g-----~~~~Yy~~~~~g~~~--~W-------------~g~~LN~~np~Vr~~Iidsl~~Wv~eygVDGFRfD~a~ 1130 (1276)
..|.. ..+.+|+.. .... +| +.++||++||+||++|+++++||+ ++||||||||++.
T Consensus 101 ~~~~~~~~p~~~~~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~dln~~np~Vr~~i~~~~~~w~-~~gvDGfR~D~~~ 177 (448)
T 1g94_A 101 NSFGNKSFPIYSPQDFHES--CTINNSDYGNDRYRVQNCELVGLADLDTASNYVQNTIAAYINDLQ-AIGVKGFRFDASK 177 (448)
T ss_dssp CEEBTTBCSSCCGGGBCCC--CBCCTTHHHHCHHHHHHSBSTTCEEBCTTSHHHHHHHHHHHHHHH-HHTCCEEEEETGG
T ss_pred CCCccccCCCCCHHHcCCC--CCcCccccCCcccccceeeccCCCCcCCCCHHHHHHHHHHHHHHH-hcCCCEEeecccc
Confidence 11211 112344321 1111 22 257999999999999999999999 5999999999999
Q ss_pred ccccccCCCCCCCCCCCccccCCCCCchHHHHHHHHHHHHHhhCCCeEEEEEccCCCCC
Q psy9003 1131 SMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPA 1189 (1276)
Q Consensus 1131 ~L~~~d~g~g~~~~~~~~~~~~~~~d~~a~~Fl~el~~~Vr~~~PdvilIAE~~s~~p~ 1189 (1276)
+|. ..||+++++.++ +++++|||.|...+.
T Consensus 178 ~i~--------------------------~~~~~~~~~~~~---~~~~~vgE~~~~~~~ 207 (448)
T 1g94_A 178 HVA--------------------------ASDIQSLMAKVN---GSPVVFQEVIDQGGE 207 (448)
T ss_dssp GSC--------------------------HHHHHHHHHTSC---SCCEEEECCCCSSCC
T ss_pred cCC--------------------------HHHHHHHHHHhc---cCCeEEEEeecCCCC
Confidence 882 248888877664 489999999976544
|
| >1ua7_A Alpha-amylase; beta-alpha-barrels, acarbose, greek-KEY motif, hydrolase; HET: ACI GLD GLC G6D BGC; 2.21A {Bacillus subtilis} SCOP: b.71.1.1 c.1.8.1 PDB: 1bag_A* 3dc0_A | Back alignment and structure |
|---|
Probab=99.95 E-value=6.7e-29 Score=289.23 Aligned_cols=196 Identities=16% Similarity=0.175 Sum_probs=145.5
Q ss_pred CCceEEEEecCCccccCccCcHHHHHHhhhhHHHHcCCCCCccceeecccccccccccccceeeccCccccccccccccC
Q psy9003 894 DNLKIYESHVGICTQEQKCASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAES 973 (1276)
Q Consensus 894 ~d~vIYElHVr~ft~~~~~Gtf~gl~ek~LdyLK~LGVna~d~wV~LmP~f~~eew~~~~pi~~l~~~Pi~E~~i~~~~S 973 (1276)
++.+|||++.+ +|++++++ |||||+||||+ |||||+++..+ ... . ..+
T Consensus 4 ~~~~~~q~f~~---------~~~~i~~~-l~yl~~lG~~~----i~l~Pi~~~~~---------------~~~--~-~~~ 51 (422)
T 1ua7_A 4 KSGTILHAWNW---------SFNTLKHN-MKDIHDAGYTA----IQTSPINQVKE---------------GNQ--G-DKS 51 (422)
T ss_dssp TTSCEEECTTB---------CHHHHHHT-HHHHHHTTCSE----EEECCCEEECC---------------TGG--G-CCB
T ss_pred cCcEEEEEecC---------CHHHHHHH-HHHHHHcCCCE----EEeCCcccccc---------------CCc--C-cCc
Confidence 46789998886 68999986 99999999999 99996654210 000 0 001
Q ss_pred CCcccCCCccccccccccccccccCCCCCCcccccccccccCCCCCccccccccccCCCCCCHHHHHHHHHHHHHcCCEE
Q psy9003 974 HDQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLYV 1053 (1276)
Q Consensus 974 ~~~~~WGYdp~nyf~~d~~~y~~~S~~~Dp~~~~dap~~~yas~s~hkYt~D~~~ID~~~Gt~eEfK~LV~alHk~GI~V 1053 (1276)
....+|||+|.+|+ +++ |+||+.+|||+||++||++||+|
T Consensus 52 ~~~~~~gY~~~~y~---------------------~~~-------------------~~~G~~~d~~~lv~~~h~~Gi~V 91 (422)
T 1ua7_A 52 MSNWYWLYQPTSYQ---------------------IGN-------------------RYLGTEQEFKEMCAAAEEYGIKV 91 (422)
T ss_dssp GGGGGGGGCEEEEE---------------------EEE-------------------TTTEEHHHHHHHHHHHHTTTCEE
T ss_pred cCCccccccceeee---------------------ccC-------------------CCCCCHHHHHHHHHHHHHCCCEE
Confidence 11246999999999 444 88999999999999999999999
Q ss_pred EEEEeccccCCcccCCCcCCCCCCCcccccCCCCCCCCCC------------CcCCCCCcHHHHHHHHHHHHHHHHhCCC
Q psy9003 1054 LLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWD------------SRLFNYSEIEVLRFLLSNLRWYLDEYQF 1121 (1276)
Q Consensus 1054 ILDvV~NHt~~~~~~~~~~f~g~~~~Yy~~~~~g~~~~W~------------g~~LN~~np~Vr~~Iidsl~~Wv~eygV 1121 (1276)
|||+|+||++.++.+....+.+ .+.||+.. +...+|. .++||+++|+||++|++++++|++ +||
T Consensus 92 ilD~V~NH~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~dln~~~~~v~~~l~~~~~~w~~-~gv 167 (422)
T 1ua7_A 92 IVDAVINHTTFDYAAISNEVKS-IPNWTHGN--TQIKNWSDRWDVTQNSLLGLYDWNTQNTQVQSYLKRFLERALN-DGA 167 (422)
T ss_dssp EEEECCSBCCSCTTTSCHHHHT-STTCEEEC--CBCCCTTCHHHHHHSBBTTBCEECTTSHHHHHHHHHHHHHHHH-TTC
T ss_pred EEEeccCcccCCccccCccccC-CcccccCC--CCCCCcCchhcccccccCCCCccccCCHHHHHHHHHHHHHHHH-cCC
Confidence 9999999999987653221222 24555432 1222332 378999999999999999999996 999
Q ss_pred cEEccCCccccccccCCCCCCCCCCCccccCCCCCchHHHHHHHHHHHHHhhCCCeEEEEEccCCCC
Q psy9003 1122 DGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMP 1188 (1276)
Q Consensus 1122 DGFRfD~a~~L~~~d~g~g~~~~~~~~~~~~~~~d~~a~~Fl~el~~~Vr~~~PdvilIAE~~s~~p 1188 (1276)
||||||++.+|...+. + ..+..||++++ .+|++++|||.|.+.+
T Consensus 168 DGfR~D~~~~~~~~~~-------~-----------~~~~~f~~~~~-----~~~~~~~vgE~~~~~~ 211 (422)
T 1ua7_A 168 DGFRFDAAKHIELPDD-------G-----------SYGSQFWPNIT-----NTSAEFQYGEILQDSA 211 (422)
T ss_dssp CEEEETTGGGSCCTTS-------G-----------GGCCSHHHHHT-----CSSCSEEEECCCCSTT
T ss_pred CEEEEEhhhhcCccch-------h-----------hhHHHHHHHhh-----cCCCceEEEEeecCCC
Confidence 9999999999842210 0 11245898876 4799999999997643
|
| >1jae_A Alpha-amylase; glycosidase, carbohydrate metabolism, 4-glucan-4-glucanohydrolase, hydrolase; 1.65A {Tenebrio molitor} SCOP: b.71.1.1 c.1.8.1 PDB: 1clv_A 1tmq_A 1viw_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=3.8e-28 Score=286.79 Aligned_cols=192 Identities=15% Similarity=0.099 Sum_probs=142.1
Q ss_pred CCCceEEEEecCCccccCccCcHHHHHHhhhhHHHHcCCCCCccceeecccccccccccccceeeccCcccccccccccc
Q psy9003 893 PDNLKIYESHVGICTQEQKCASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAE 972 (1276)
Q Consensus 893 ~~d~vIYElHVr~ft~~~~~Gtf~gl~ek~LdyLK~LGVna~d~wV~LmP~f~~eew~~~~pi~~l~~~Pi~E~~i~~~~ 972 (1276)
..+.+|++++-+. |+|+++++|||||+||||+ |||||+++. +..
T Consensus 8 ~~~~~i~~~F~w~---------~~gi~~~~ldyL~~LGv~~----I~l~Pi~~~----------------------~~~- 51 (471)
T 1jae_A 8 SGRNSIVHLFEWK---------WNDIADECERFLQPQGFGG----VQISPPNEY----------------------LVA- 51 (471)
T ss_dssp TTCEEEEEETTCC---------HHHHHHHHHHTTTTTTEEE----EECCCCSCB----------------------BCC-
T ss_pred CCCCeEEEEecCC---------HHHHHHHHHHHHHHcCCCE----EEeCccccc----------------------cCC-
Confidence 3578999988764 8999997679999999999 999966542 100
Q ss_pred CCCcccCCCccccccccccccccccCCCCCCcccccccccccCCCCCccccccccccCCCCCCHHHHHHHHHHHHHcCCE
Q psy9003 973 SHDQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLY 1052 (1276)
Q Consensus 973 S~~~~~WGYdp~nyf~~d~~~y~~~S~~~Dp~~~~dap~~~yas~s~hkYt~D~~~ID~~~Gt~eEfK~LV~alHk~GI~ 1052 (1276)
.....+|||+|.| | +|||+||+.+|||+||++||++||+
T Consensus 52 ~~~~~~~gYd~~d-y----------------------------------------~idp~~Gt~~d~~~lv~~~h~~Gi~ 90 (471)
T 1jae_A 52 DGRPWWERYQPVS-Y----------------------------------------IINTRSGDESAFTDMTRRCNDAGVR 90 (471)
T ss_dssp TTCCGGGGGSBCC-S----------------------------------------CSEETTEEHHHHHHHHHHHHHTTCE
T ss_pred CCCCccccccccc-c----------------------------------------cccCCCCCHHHHHHHHHHHHHCCCE
Confidence 0112346887766 3 2458999999999999999999999
Q ss_pred EEEEEeccccCCcccCC---C------cCCCCCC--CcccccCCCCCCCCCC------------CcCCCCCcHHHHHHHH
Q psy9003 1053 VLLDVVHSHASKNVLDG---L------NEFDGTQ--ACFFHDGPRGTHPLWD------------SRLFNYSEIEVLRFLL 1109 (1276)
Q Consensus 1053 VILDvV~NHt~~~~~~~---~------~~f~g~~--~~Yy~~~~~g~~~~W~------------g~~LN~~np~Vr~~Ii 1109 (1276)
||||+|+||++.++..+ . ..|.+.. ..+|+. ......|+ .++||++||+||++|+
T Consensus 91 VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~f~~--~~~i~~~~~~~~~~~~~~~~~pdLn~~np~V~~~i~ 168 (471)
T 1jae_A 91 IYVDAVINHMTGMNGVGTSGSSADHDGMNYPAVPYGSGDFHS--PCEVNNYQDADNVRNCELVGLRDLNQGSDYVRGVLI 168 (471)
T ss_dssp EEEEECCSBCCSSCEEBTTSCEEBTTTTBBTTTTBCGGGBCC--CCBCCCTTCHHHHHHSBBTTBCBBCTTSHHHHHHHH
T ss_pred EEEEEecccccCCCCcCCCCCccCccCCcCCCCCCCHhHcCC--CCCccCCCChhhccccccCCCCccCcCCHHHHHHHH
Confidence 99999999999885110 0 0111110 112321 11112342 3889999999999999
Q ss_pred HHHHHHHHhCCCcEEccCCccccccccCCCCCCCCCCCccccCCCCCchHHHHHHHHHHHHHhhC--------CCeEEEE
Q psy9003 1110 SNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKY--------PEIITIA 1181 (1276)
Q Consensus 1110 dsl~~Wv~eygVDGFRfD~a~~L~~~d~g~g~~~~~~~~~~~~~~~d~~a~~Fl~el~~~Vr~~~--------PdvilIA 1181 (1276)
++++||+ ++||||||||++.+|. ..||+++++.+++.+ |+++++|
T Consensus 169 ~~~~~w~-~~gvDGfRlDa~~~i~--------------------------~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g 221 (471)
T 1jae_A 169 DYMNHMI-DLGVAGFRVDAAKHMS--------------------------PGDLSVIFSGLKNLNTDYGFADGARPFIYQ 221 (471)
T ss_dssp HHHHHHH-HTTCCEEEETTGGGSC--------------------------HHHHHHHHHTCCCCCGGGTCCTTCCCEEEE
T ss_pred HHHHHHH-HcCCCEEEeechhcCC--------------------------HHHHHHHHHHHhhhccccccccCCCceEEE
Confidence 9999999 5999999999999882 248999998888764 6789999
Q ss_pred EccCCCCCC
Q psy9003 1182 EDVSGMPAS 1190 (1276)
Q Consensus 1182 E~~s~~p~~ 1190 (1276)
|.|...+..
T Consensus 222 E~~~~~~~~ 230 (471)
T 1jae_A 222 EVIDLGGEA 230 (471)
T ss_dssp ECCCCSSSS
T ss_pred eeecCCCcc
Confidence 998765443
|
| >4gqr_A Pancreatic alpha-amylase; glycosyl hydrolase, diabetes, obesity, digestion, glycosidas inhibition, flavonol, drug design; HET: NAG MYC; 1.20A {Homo sapiens} PDB: 1cpu_A* 1bsi_A 1u2y_A* 1u30_A* 1u33_A* 1xcw_A* 1xcx_A* 1xd0_A* 1xd1_A* 2qmk_A* 2qv4_A* 3bai_A* 3baj_A* 3baw_A* 3ij7_A* 1hny_A* 3ij9_A* 3ij8_A* 4gqq_A* 1kgw_A* ... | Back alignment and structure |
|---|
Probab=99.94 E-value=2.4e-26 Score=267.74 Aligned_cols=189 Identities=14% Similarity=0.187 Sum_probs=130.5
Q ss_pred cHHHHHHhhhhHHHHcCCCCCccceeecccccccccccccceeeccCccccccccccccCCCcccCCCcccccccccccc
Q psy9003 914 SYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAESHDQALVGDKTIAFWLMDKEM 993 (1276)
Q Consensus 914 tf~gl~ek~LdyLK~LGVna~d~wV~LmP~f~~eew~~~~pi~~l~~~Pi~E~~i~~~~S~~~~~WGYdp~nyf~~d~~~ 993 (1276)
+|..++++..+||++||||+ |||+|+. |+..+ .......+.||+|.+ |
T Consensus 20 ~w~~ia~e~~~yl~~~G~~~----v~~~P~~--------------------e~~~~-~~~~~~~~~~Y~~~d-y------ 67 (496)
T 4gqr_A 20 RWVDIALECERYLAPKGFGG----VQVSPPN--------------------ENVAI-YNPFRPWWERYQPVS-Y------ 67 (496)
T ss_dssp CHHHHHHHHHHTTTTTTCCE----EEECCCS--------------------CBBCC-TTTTSCGGGGGSBSC-S------
T ss_pred CHHHHHHHHHHHHHHhCCCE----EEeCccc--------------------cCccC-CCCCCCcccccCccC-c------
Confidence 59999988789999999999 9999443 33100 001111223666665 3
Q ss_pred ccccCCCCCCcccccccccccCCCCCccccccccccCCCCCCHHHHHHHHHHHHHcCCEEEEEEeccccCCcccCCCcCC
Q psy9003 994 YTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEF 1073 (1276)
Q Consensus 994 y~~~S~~~Dp~~~~dap~~~yas~s~hkYt~D~~~ID~~~Gt~eEfK~LV~alHk~GI~VILDvV~NHt~~~~~~~~~~f 1073 (1276)
+|||+|||++|||+||++||++||+||||+|+||++.++.++....
T Consensus 68 ----------------------------------~i~~~~Gt~~df~~lv~~aH~~Gi~VilD~V~NH~~~~~~~~~~~~ 113 (496)
T 4gqr_A 68 ----------------------------------KLCTRSGNEDEFRNMVTRCNNVGVRIYVDAVINHMCGNAVSAGTSS 113 (496)
T ss_dssp ----------------------------------CSCBTTBCHHHHHHHHHHHHHTTCEEEEEECCSEEEETTSCSBSCB
T ss_pred ----------------------------------eeCCCCCCHHHHHHHHHHHHHCCCEEEEEEccCcCCCccccccccC
Confidence 3558999999999999999999999999999999998876542110
Q ss_pred C-CC----------CCcc----cccC----CCCCCCCCC------------CcCCCCCcHHHHHHHHHHHHHHHHhCCCc
Q psy9003 1074 D-GT----------QACF----FHDG----PRGTHPLWD------------SRLFNYSEIEVLRFLLSNLRWYLDEYQFD 1122 (1276)
Q Consensus 1074 ~-g~----------~~~Y----y~~~----~~g~~~~W~------------g~~LN~~np~Vr~~Iidsl~~Wv~eygVD 1122 (1276)
. +. ...| |... ..+...+|. .++||++||.||++|++++++|++ +|||
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dln~~n~~V~~~l~~~~~~~~~-~gvD 192 (496)
T 4gqr_A 114 TCGSYFNPGSRDFPAVPYSGWDFNDGKCKTGSGDIENYNDATQVRDCRLTGLLDLALEKDYVRSKIAEYMNHLID-IGVA 192 (496)
T ss_dssp TTCCCBBTTTTBBTTTTBCGGGBSTTTCCSSSSBCCCTTCHHHHHHSBGGGEEEBCTTSHHHHHHHHHHHHHHHH-HTCC
T ss_pred cCCcccccccccCCCCCCCccccCCCcccCCCCcccccCCcceeEeeecCCCCccccCCHHHHHHHHHHHHHHHh-cCcc
Confidence 0 00 0000 1110 011122332 268999999999999999999995 8999
Q ss_pred EEccCCccccccccCCCCCCCCCCCccccCCCCCchHHHHHHHHHHHHHhhC-------CCeEEEEEccCCCCCCccccc
Q psy9003 1123 GFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKY-------PEIITIAEDVSGMPASCRPVT 1195 (1276)
Q Consensus 1123 GFRfD~a~~L~~~d~g~g~~~~~~~~~~~~~~~d~~a~~Fl~el~~~Vr~~~-------PdvilIAE~~s~~p~~~~p~~ 1195 (1276)
|||+|++.++. ..||+.+...++..+ ++..+++|.+........+..
T Consensus 193 GfR~D~~k~~~--------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~ 246 (496)
T 4gqr_A 193 GFRLDASKHMW--------------------------PGDIKAILDKLHNLNSNWFPAGSKPFIYQEVIDLGGEPIKSSD 246 (496)
T ss_dssp EEEETTGGGSC--------------------------HHHHHHHHTTCCCCCTTTSCTTCCCEEEECCCCCSSSSCCGGG
T ss_pred eeecccccccc--------------------------hHHHHHHHHHHHhhccchhcccCcceEEeeeeccCccccchhh
Confidence 99999999883 236777666665544 457888998876665555543
|
| >1r7a_A Sucrose phosphorylase; beta-alpha-barrels, dimer, glycoside hydrolase, transferase; 1.77A {Bifidobacterium adolescentis} SCOP: b.71.1.1 c.1.8.1 PDB: 2gdv_A* 2gdu_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.7e-27 Score=283.43 Aligned_cols=192 Identities=12% Similarity=0.061 Sum_probs=139.0
Q ss_pred ecCCccccCccCcHHHHHHhhhh-HHHHcCCCCCccceeecccccccccccccceeeccCccccccccccccCCCcccCC
Q psy9003 902 HVGICTQEQKCASYEDFVRVVIP-RIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAESHDQALVG 980 (1276)
Q Consensus 902 HVr~ft~~~~~Gtf~gl~ek~Ld-yLK~LGVna~d~wV~LmP~f~~eew~~~~pi~~l~~~Pi~E~~i~~~~S~~~~~WG 980 (1276)
.+++|.+....|+|.+++++ |+ |||+| ||+ |||||+|+ +. +..+||
T Consensus 6 ~~~sf~d~~~gg~~~~i~~~-ld~yL~~L-v~~----IwL~Pi~~-------------------~~--------~~~~~G 52 (504)
T 1r7a_A 6 QLITYADRLGDGTIKSMTDI-LRTRFDGV-YDG----VHILPFFT-------------------PF--------DGADAG 52 (504)
T ss_dssp EEEECSSSBSSSSHHHHHHH-HHHHSTTT-CCE----EEECCCEE-------------------CS--------SSSSTT
T ss_pred eeeeeEeccCCCCHHHHHHH-HHHHHHHH-hCe----EEECCccc-------------------CC--------CCCCCC
Confidence 35666543226899999986 98 99999 999 99995441 21 124699
Q ss_pred CccccccccccccccccCCCCCCcccccccccccCCCCCccccccccccCCCCCCHHHHHHHHHHHHHcCCEEEEEEecc
Q psy9003 981 DKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHS 1060 (1276)
Q Consensus 981 Ydp~nyf~~d~~~y~~~S~~~Dp~~~~dap~~~yas~s~hkYt~D~~~ID~~~Gt~eEfK~LV~alHk~GI~VILDvV~N 1060 (1276)
|++.||+ +++ |+||+.+|||+||+ ||+||||+|+|
T Consensus 53 Y~~~dy~---------------------~id-------------------p~~Gt~~df~~Lv~-----Gi~VilD~V~N 87 (504)
T 1r7a_A 53 FDPIDHT---------------------KVD-------------------ERLGSWDDVAELSK-----THNIMVDAIVN 87 (504)
T ss_dssp SSCSEEE---------------------EEC-------------------TTTCCHHHHHHHHT-----TSEEEEEEECS
T ss_pred CCccChh---------------------hcC-------------------cccCCHHHHHHHHh-----CCEEEEEECCC
Confidence 9999999 454 99999999999996 99999999999
Q ss_pred ccCCcccCCCcCC----CCCCCccccc----CCCCC----------------CCCC----------C-----CcCCCCCc
Q psy9003 1061 HASKNVLDGLNEF----DGTQACFFHD----GPRGT----------------HPLW----------D-----SRLFNYSE 1101 (1276)
Q Consensus 1061 Ht~~~~~~~~~~f----~g~~~~Yy~~----~~~g~----------------~~~W----------~-----g~~LN~~n 1101 (1276)
||+.+++|+.... ++..+.||.. .+++. +.+| . .++||++|
T Consensus 88 H~s~~~~~f~~~~~~~~~~~y~~~y~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~f~~~~pdLn~~n 167 (504)
T 1r7a_A 88 HMSWESKQFQDVLAKGEESEYYPMFLTMSSVFPNGATEEDLAGIYRPRPGLPFTHYKFAGKTRLVWVSFTPQQVDIDTDS 167 (504)
T ss_dssp EEETTSHHHHHHHHHGGGSTTGGGBCBHHHHCTTCBCHHHHHTSCCSSSSCSEEEEEETTEEEEEECSSSTTEEEBCTTS
T ss_pred cCCCcchHHHHHhhcCCCCccccceEeccccCcCCCCCcchhhhcCCCCCCCCCCceEcCCceEEECccCCCCCccCCCC
Confidence 9999876542110 1111334431 01110 1122 1 27999999
Q ss_pred HHHHHHHHHHHHHHHHhCCCcEEccCCccccccccCCCCCCCCCCCccccCCCCCchHHHHHHHHHHHHHhhCCCeEEEE
Q psy9003 1102 IEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIA 1181 (1276)
Q Consensus 1102 p~Vr~~Iidsl~~Wv~eygVDGFRfD~a~~L~~~d~g~g~~~~~~~~~~~~~~~d~~a~~Fl~el~~~Vr~~~PdvilIA 1181 (1276)
|+||++|+++++||+ ++||||||||++.+|.... +..+ ....+.+.|++++++.+++ |++++||
T Consensus 168 p~Vr~~i~~~~~~W~-~~gvDGfR~Da~~~~~~~~---~~~~----------~~~~~~~~~l~~~~~~~~~--~~~~~ig 231 (504)
T 1r7a_A 168 DKGWEYLMSIFDQMA-ASHVSYIRLDAVGYGAKEA---GTSC----------FMTPKTFKLISRLREEGVK--RGLEILI 231 (504)
T ss_dssp HHHHHHHHHHHHHHH-HTTCCEEEEETGGGSCCCT---TSCS----------SSCHHHHHHHHHHHHHHHH--TTCEEEE
T ss_pred HHHHHHHHHHHHHHH-HcCCCEEEEcccccccccC---CCcc----------cCchhHHHHHHHHHHHhCc--CCcEEEE
Confidence 999999999999998 6999999999999884221 1100 0114567789999988866 8999999
Q ss_pred EccCCC
Q psy9003 1182 EDVSGM 1187 (1276)
Q Consensus 1182 E~~s~~ 1187 (1276)
|.|..+
T Consensus 232 E~~~~~ 237 (504)
T 1r7a_A 232 EVHSYY 237 (504)
T ss_dssp CCCSCH
T ss_pred Eecccc
Confidence 998763
|
| >1iv8_A Maltooligosyl trehalose synthase; beta alpha barrel, intramolecular transglucosylation, isomerase; HET: MLZ MLY; 1.90A {Sulfolobus acidocaldarius} SCOP: b.71.1.1 c.1.8.1 | Back alignment and structure |
|---|
Probab=99.91 E-value=9e-25 Score=267.99 Aligned_cols=175 Identities=17% Similarity=0.210 Sum_probs=130.2
Q ss_pred cCcHHHHHHhhhhHHHHcCCCCCccceeecccccccccccccceeeccCccccccccccccCCCcccCCCcccccccccc
Q psy9003 912 CASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAESHDQALVGDKTIAFWLMDK 991 (1276)
Q Consensus 912 ~Gtf~gl~ek~LdyLK~LGVna~d~wV~LmP~f~~eew~~~~pi~~l~~~Pi~E~~i~~~~S~~~~~WGYdp~nyf~~d~ 991 (1276)
.|+|+|++++ ||||++||||+ |||+|++ +. + +.++|||++.|||
T Consensus 13 gGtf~gi~~~-LdYLk~LGVta----IwLsPi~--------------------~~--~-----~gs~hGYdv~Dy~---- 56 (720)
T 1iv8_A 13 NFNFGDVIDN-LWYFXDLGVSH----LYLSPVL--------------------MA--S-----PGSNHGYDVIDHS---- 56 (720)
T ss_dssp TBCHHHHHHT-HHHHHHHTCCE----EEECCCE--------------------EE--C-----TTCSSCCSEEEEE----
T ss_pred CCCHHHHHHH-HHHHHhCCCCE----EEECCcc--------------------cC--C-----CCCCCCCCCccCC----
Confidence 5899999985 99999999999 9999444 32 1 2257999999999
Q ss_pred ccccccCCCCCCcccccccccccCCCCCccccccccccCCCCCCHHHHHHHHHHHHHcCCEEEEEEeccccC--CcccCC
Q psy9003 992 EMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHAS--KNVLDG 1069 (1276)
Q Consensus 992 ~~y~~~S~~~Dp~~~~dap~~~yas~s~hkYt~D~~~ID~~~Gt~eEfK~LV~alHk~GI~VILDvV~NHt~--~~~~~~ 1069 (1276)
+++ |+||+.+||++||++||++||+||||+|+||++ .+++|+
T Consensus 57 -----------------~Id-------------------p~lGt~edfk~LV~aaH~~GIkVIlDvV~NHta~~~~~~wf 100 (720)
T 1iv8_A 57 -----------------RIN-------------------DELGGEKEYRRLIETAHTIGLGIIQDIVPNHMAVNSLNWRL 100 (720)
T ss_dssp -----------------EEC-------------------TTTTHHHHHHHHHHHHHHTTCEEEEEECCSEEECCTTCHHH
T ss_pred -----------------CcC-------------------ccCCCHHHHHHHHHHHHHCCCEEEEEeccccccCccccHHH
Confidence 444 899999999999999999999999999999999 554332
Q ss_pred Cc------------CC--C---CC----------------------------CCccccc-----CCC---------CCC-
Q psy9003 1070 LN------------EF--D---GT----------------------------QACFFHD-----GPR---------GTH- 1089 (1276)
Q Consensus 1070 ~~------------~f--~---g~----------------------------~~~Yy~~-----~~~---------g~~- 1089 (1276)
.. .| + |. ...||.. +++ ..+
T Consensus 101 ~d~l~~G~~s~y~d~f~~~~~~g~~~~P~~g~~yg~~l~~g~l~~~~d~g~~~~~Yy~~~fp~~~~~~~l~~~~~~q~yr 180 (720)
T 1iv8_A 101 MDVLXMGXXSXYYTYFDFFPEDDKIRLPILGEDLDTVISKGLLKIVKDGDEYFLEYFKWKLPLTEVGNDIYDTLQKQNYT 180 (720)
T ss_dssp HHHHHHGGGSTTGGGBCBCTTCSSEEEEEESSCHHHHHHTTCEEEEECSSCEEEEETTEEEECSCCCSSHHHHHTTSSEE
T ss_pred HHhhhcccccccccceeecCCCCcccCCcccccccccccccceeeeecCCCcchhhccccCCcCccccchhhhhhcccee
Confidence 00 00 0 00 0012211 000 000
Q ss_pred -------CCCC-------CcCCCCCcHHHHHHHHHHHHHHHHhCCCcEEccCCccccccccCCCCCCCCCCCccccCCCC
Q psy9003 1090 -------PLWD-------SRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNV 1155 (1276)
Q Consensus 1090 -------~~W~-------g~~LN~~np~Vr~~Iidsl~~Wv~eygVDGFRfD~a~~L~~~d~g~g~~~~~~~~~~~~~~~ 1155 (1276)
.+|. .++||+++|+|+++|.+++++| ||||||||++.+|.
T Consensus 181 l~~W~~~lNyr~f~d~~~L~dLn~enP~V~~~i~d~l~~W----GVDGFRiDaa~~L~---------------------- 234 (720)
T 1iv8_A 181 LMSWKNPPSYRRFFDVNTLIGVNVEXDHVFQESHSXILDL----DVDGYRIDHIDGLY---------------------- 234 (720)
T ss_dssp EEETTSCCSBCEETTEEEEEEBCTTSHHHHHHHTTTGGGS----CCSEEEETTGGGCS----------------------
T ss_pred cccccccccccccccccCCcccccCcHHHHHHHHHHHHhc----CCCEEEEechhhhc----------------------
Confidence 2231 2578889999999999999999 99999999999882
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEEccCCCCCC
Q psy9003 1156 DTDALIYLMVANKFLHDKYPEIITIAEDVSGMPAS 1190 (1276)
Q Consensus 1156 d~~a~~Fl~el~~~Vr~~~PdvilIAE~~s~~p~~ 1190 (1276)
++..||+++++.++ | +++|||.|......
T Consensus 235 --~p~~f~~~lr~~v~---p-~~ligE~~~~~~e~ 263 (720)
T 1iv8_A 235 --DPEKYINDLRSIIK---N-XIIIVEKILGFQEE 263 (720)
T ss_dssp --CHHHHHHHHHHHHT---T-CEEEECCCCCTTCC
T ss_pred --ChHHHHHHHHHHhc---c-ceEEeeccCCCCcc
Confidence 13569999998764 7 99999998764443
|
| >3k1d_A 1,4-alpha-glucan-branching enzyme; mycobacterium tuberculosis H37RV, mesophilic human pathogen, RV1326C gene, glycosyl transferase; 2.33A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.90 E-value=4.3e-24 Score=264.03 Aligned_cols=122 Identities=23% Similarity=0.361 Sum_probs=111.3
Q ss_pred hHHHhhccceEec-CC------cEEEEEEccCCceEEEEeecc-CCCcc--e-------EEEEEccCccccceEEEEEec
Q psy9003 59 TTSYNKYGIHVQA-DN------SVRCFEWAPSAQQLYLTGNVS-LTPWS--I-------MEEASLSSIKLIQSIQYILTG 121 (1276)
Q Consensus 59 s~~y~~fGah~~~-~g------g~~f~~wAP~A~~v~l~gdfn-~~~w~--m-------~~~~~~~~~~~g~~yky~i~~ 121 (1276)
.++|++||||+.. +| ||+|+||||+|++|+|+|||| |+.-. | +|++|||++++|+.|||+|.+
T Consensus 115 ~~~~~~~gah~~~~~~~~~~~~g~~F~vwAP~A~~V~l~gdfn~w~~~~~~m~~~~~~GvW~~~i~~~~~g~~Y~y~i~~ 194 (722)
T 3k1d_A 115 ERLWEVLGAHPRSFTTADGVVSGVSFAVWAPNAKGVSLIGEFNGWNGHEAPMRVLGPSGVWELFWPDFPCDGLYKFRVHG 194 (722)
T ss_dssp TTGGGTSEEEEEEEECSSSEEEEEEEEEECTTCSEEEEEEGGGTTCCCSCBCEECGGGCEEEEEEETCCTTCEEEEEEEC
T ss_pred hHHHHhcCCEEEeecCCcCCCceEEEEEECCCCCEEEEEeecCCCCCCcccCEEcCCCCEEEEEeCCCCCCCEEEEEEEc
Confidence 4689999999765 44 899999999999999999995 53222 6 999999999999999999999
Q ss_pred CCC---------------CCCccccccc---------------------------ccccccCC---ChHHHHHHHHHHHH
Q psy9003 122 VFG---------------TPEQLKYLVD---------------------------ECHKAGLF---GTPEQLKYLVDECH 156 (1276)
Q Consensus 122 ~~g---------------rp~~as~~~d---------------------------e~h~gs~~---~y~e~a~~li~y~~ 156 (1276)
++| +|++||+|+| |+|+|||- +|++|+++|+||+|
T Consensus 195 ~~g~~~~~~DPya~~~~~~~~~~s~v~~~~~~w~d~~w~~~~~~~~~~~~~~~IYE~h~~s~~~~G~~~~l~~~l~~yLk 274 (722)
T 3k1d_A 195 ADGVVTDRADPFAFGTEVPPQTASRVTSSDYTWGDDDWMAGRALRNPVNEAMSTYEVHLGSWRPGLSYRQLARELTDYIV 274 (722)
T ss_dssp TTSCEEEECCTTCSSBCCTTCCCEECCCCCCCCSCHHHHHHHTTCCGGGSCCEEEEECTTTSSTTCCHHHHHHHHHHHHH
T ss_pred CCCcEEEeecccceeeccCCCcceEEeCCCCCCCchHHhhhccccccCCCCeEEEEEehhhccCCCCHHHHHHHHHHHHH
Confidence 887 8999999987 99999984 79999999999999
Q ss_pred hcCc------------------------------CCCHHHHHHHHHHHHHcCCC
Q psy9003 157 KAGL------------------------------FGTPEQLKYLVDECHKAGLF 180 (1276)
Q Consensus 157 ~~~y------------------------------ygtp~~l~~~vd~~h~~~i~ 180 (1276)
++|+ ||||+||++||++||++||+
T Consensus 275 ~lG~t~I~L~Pi~e~~~~~~wGY~~~~y~a~~~~yGt~~dfk~lV~~~H~~GI~ 328 (722)
T 3k1d_A 275 DQGFTHVELLPVAEHPFAGSWGYQVTSYYAPTSRFGTPDDFRALVDALHQAGIG 328 (722)
T ss_dssp HHTCSEEEESCCEECSCGGGTTCSCSEEEEECGGGCCHHHHHHHHHHHHHTTCE
T ss_pred HcCCCeEEECCcccCCCCCCCCCCcccCcCccccCCCHHHHHHHHHHHHHcCCE
Confidence 9999 99999999999999999998
|
| >1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 | Back alignment and structure |
|---|
Probab=99.86 E-value=5.8e-22 Score=226.89 Aligned_cols=380 Identities=16% Similarity=0.088 Sum_probs=192.4
Q ss_pred hcccccCCChHHHHHHHhhhhccCCCCCccccchhhhhhcccccCCCHHHHHHHhhhhhccCCCCcccchhhhhcccccc
Q psy9003 269 CHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKA 348 (1276)
Q Consensus 269 ~h~~~~~~~ie~~~yli~e~~~~~~~~~~~~~t~~~~~~~~a~~~gsi~~l~~Lv~~~~~~~~~~~~~~~~~~~~~~~~a 348 (1276)
-|.|...|++|+|++|++. ..++-..+..+ .|+++.|+..|++|++++|++..-.++ ..+. ...|+.+.|
T Consensus 18 L~~Aa~~g~~~~v~~Ll~~-g~~~~~~~~~~----~t~L~~A~~~g~~~~v~~Ll~~g~~~~--~~~~---~g~t~L~~A 87 (437)
T 1n11_A 18 LHVASFMGHLPIVKNLLQR-GASPNVSNVKV----ETPLHMAARAGHTEVAKYLLQNKAKVN--AKAK---DDQTPLHCA 87 (437)
T ss_dssp HHHHHHHTCHHHHHHHHHT-TCCSCCSSSCC----CCHHHHHHHHTCHHHHHHHHHHTCCSS--CCCT---TSCCHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHc-CCCCCCCCCCC----CCHHHHHHHcCCHHHHHHHHhCCCCCC--CCCC---CCCCHHHHH
Confidence 3455555666666666663 23433333333 334455555666666666666533222 2111 123445556
Q ss_pred ccCCChhhhHHhhhhhccccC-CCChhhHHHHHhhhcccccCCChhHHHHHhhhcccccCCCChhhhhcccccchhcccc
Q psy9003 349 GLFGTPEQLKYLVDECHKAGL-FGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLF 427 (1276)
Q Consensus 349 ~~~g~ie~~~yLi~~~h~~~~-~~~~e~~~~~~~~~~~a~~~~~id~vkyLi~~~h~~~~~~~~~~~~~~vt~lh~a~~~ 427 (1276)
+..|++|+|++|++..-..+. +.......+ .|...|++|+|++|+... .+....+..+. |+||.|+..
T Consensus 88 ~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~------~A~~~g~~~~v~~Ll~~~-~~~~~~~~~g~----t~L~~A~~~ 156 (437)
T 1n11_A 88 ARIGHTNMVKLLLENNANPNLATTAGHTPLH------IAAREGHVETVLALLEKE-ASQACMTKKGF----TPLHVAAKY 156 (437)
T ss_dssp HHHTCHHHHHHHHHHTCCTTCCCTTCCCHHH------HHHHHTCHHHHHHHHHTT-CCSCCCCTTSC----CHHHHHHHT
T ss_pred HHCCCHHHHHHHHhCCCCCCCCCCCCCcHHH------HHHHcCCHHHHHHHHhCC-CCCcCCCCCCC----CHHHHHHHc
Confidence 666666666666654332221 111111111 122235666666666432 12222334444 666666666
Q ss_pred CCHhHHHhhcccccccccCCChhhHHHHHHHHhHhccCCChhhHHHhhhhhcccccCCChhhhhhhhhhhhhhccCCCHH
Q psy9003 428 GTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPE 507 (1276)
Q Consensus 428 ~~~~~~~yli~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~~~~~~~v~~~~~a~~~~~~e~~~~lv~~~~~~~~~~~~~ 507 (1276)
|+.+++++|+..+... +..+... .|..|.|..+|..|.+++|++....++....
T Consensus 157 g~~~~v~~Ll~~g~~~-------------------~~~~~~g-----~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~-- 210 (437)
T 1n11_A 157 GKVRVAELLLERDAHP-------------------NAAGKNG-----LTPLHVAVHHNNLDIVKLLLPRGGSPHSPAW-- 210 (437)
T ss_dssp TCHHHHHHHHHTTCCT-------------------TCCCSSC-----CCHHHHHHHTTCHHHHHHHGGGTCCSCCCCT--
T ss_pred CCHHHHHHHHhCCCCC-------------------CCCCCCC-----CCHHHHHHHcCCHHHHHHHHhCCCCCCCcCC--
Confidence 6666666666533211 1111111 3455666666667777777666655554332
Q ss_pred HHHHHhhhhcccccCCCHHHHHHHHhhhhhcCCCCCcchhhhhhhhhhccccCCCHHHHHHHHHhhhhccCCCChhhhhh
Q psy9003 508 QLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKY 587 (1276)
Q Consensus 508 ~~~~~~t~~~~a~~~g~~e~~~~lv~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~ 587 (1276)
...|+.+.|+..|+++++++|++.+.++|..+. ...|..+.|...|+.|.+++|++.++++|......
T Consensus 211 ---~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~-----~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g---- 278 (437)
T 1n11_A 211 ---NGYTPLHIAAKQNQVEVARSLLQYGGSANAESV-----QGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSG---- 278 (437)
T ss_dssp ---TCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT-----TCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTC----
T ss_pred ---CCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCC-----CCCCHHHHHHHCCCHHHHHHHHhcCCCCCCCCCCC----
Confidence 124566666667777777777766666554333 23344455556677777777776666655322211
Q ss_pred hhhhhcccccCCCHHHHHHHHhhhhhccCCCChhhhhhhHHHhhhccCCCCHHHHHHHHHHHHhhcCCCChHHHhhhhhh
Q psy9003 588 LVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDE 667 (1276)
Q Consensus 588 ~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 667 (1276)
.|..+.|...|+++.+++|++.++++|.+-..- .++++.|..+|+++.+++|++.-...+. . =+.--++
T Consensus 279 -~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g-----~t~L~~A~~~g~~~~v~~Ll~~gad~n~--~---~~~g~t~ 347 (437)
T 1n11_A 279 -LTPLHLVAQEGHVPVADVLIKHGVMVDATTRMG-----YTPLHVASHYGNIKLVKFLLQHQADVNA--K---TKLGYSP 347 (437)
T ss_dssp -CCHHHHHHHHTCHHHHHHHHHHTCCTTCCCSSC-----CCHHHHHHHSSCSHHHHHHHHTTCCTTC--C---CTTSCCH
T ss_pred -CCHHHHHHHcCCHHHHHHHHhCCccCCCCCCCC-----CCHHHHHHHcCcHHHHHHHHhcCCCCCC--C---CCCCCCH
Confidence 234444446666777777776666655433222 3455556666667777666653111100 0 0112246
Q ss_pred hhhcccCCChhHHHHHHHHHHhhccCCChhHHHhhHHHHhhcccCCCHHHHHHHHH
Q psy9003 668 CHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVD 723 (1276)
Q Consensus 668 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 723 (1276)
+|.|..+|+.+++++|++.=...+. .. +.-.+.++-|...|+.+.+++|-.
T Consensus 348 L~~A~~~g~~~iv~~Ll~~ga~~~~--~~---~~g~t~l~~A~~~g~~~~~~~l~~ 398 (437)
T 1n11_A 348 LHQAAQQGHTDIVTLLLKNGASPNE--VS---SDGTTPLAIAKRLGYISVTDVLKV 398 (437)
T ss_dssp HHHHHHTTCHHHHHHHHHTTCCSCC--CC---SSSCCHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHCChHHHHHHHHHCcCCCCC--CC---CCCCCHHHHHHHcCcHHHHHHHHh
Confidence 6666666777766666653111110 00 011234555666666666666543
|
| >1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 | Back alignment and structure |
|---|
Probab=99.86 E-value=5.2e-22 Score=227.28 Aligned_cols=364 Identities=17% Similarity=0.087 Sum_probs=241.5
Q ss_pred hhcccCCCCHHHHHhhhhh--------------hcccccCCChHHHHHHHhhhhccCCCCCccccchhhhhhcccccCCC
Q psy9003 250 CHKAGLFGTPEQLKYLVDE--------------CHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGT 315 (1276)
Q Consensus 250 ~~~~~~~g~~~~~~~li~~--------------~h~~~~~~~ie~~~yli~e~~~~~~~~~~~~~t~~~~~~~~a~~~gs 315 (1276)
+|.|+..|.++++++|+.. -|.|...|++|+|++|++.. .+.-..+..+ .|+++.|+..|+
T Consensus 18 L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g-~~~~~~~~~g----~t~L~~A~~~g~ 92 (437)
T 1n11_A 18 LHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNK-AKVNAKAKDD----QTPLHCAARIGH 92 (437)
T ss_dssp HHHHHHHTCHHHHHHHHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHT-CCSSCCCTTS----CCHHHHHHHHTC
T ss_pred HHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCC-CCCCCCCCCC----CCHHHHHHHCCC
Confidence 3666666666666666643 34455567888888888742 3433333333 455577778899
Q ss_pred HHHHHHHhhhhhccCCCCcccchhhhhccccccccCCChhhhHHhhhhhcccc-CCCChhhHHHHHhhhcccccCCChhH
Q psy9003 316 PEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAG-LFGTPEQLKYLVDECHKAGLFGTPEQ 394 (1276)
Q Consensus 316 i~~l~~Lv~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~ie~~~yLi~~~h~~~-~~~~~e~~~~~~~~~~~a~~~~~id~ 394 (1276)
.+++++|++..-..+..+. ...|+.+.|+..|++|+|++|++.....+ .+...... .+.|...|++++
T Consensus 93 ~~~v~~Ll~~ga~~~~~~~-----~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~------L~~A~~~g~~~~ 161 (437)
T 1n11_A 93 TNMVKLLLENNANPNLATT-----AGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTP------LHVAAKYGKVRV 161 (437)
T ss_dssp HHHHHHHHHHTCCTTCCCT-----TCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCH------HHHHHHTTCHHH
T ss_pred HHHHHHHHhCCCCCCCCCC-----CCCcHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCH------HHHHHHcCCHHH
Confidence 9999999987544332221 22456678888899999999987654333 22222222 222334689999
Q ss_pred HHHHhhhcccccCCCChhhhhcccccchhccccCCHhHHHhhcccccccccCCChhhHHHHHHHHhHhccCCChhhHHHh
Q psy9003 395 LKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYL 474 (1276)
Q Consensus 395 vkyLi~~~h~~~~~~~~~~~~~~vt~lh~a~~~~~~~~~~yli~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~~~~~~~ 474 (1276)
+++|+... .++-..+..+. |+||.|+..|+.++|++|+..+...... +. ..
T Consensus 162 v~~Ll~~g-~~~~~~~~~g~----t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~------------------~g----- 212 (437)
T 1n11_A 162 AELLLERD-AHPNAAGKNGL----TPLHVAVHHNNLDIVKLLLPRGGSPHSP-AW------------------NG----- 212 (437)
T ss_dssp HHHHHHTT-CCTTCCCSSCC----CHHHHHHHTTCHHHHHHHGGGTCCSCCC-CT------------------TC-----
T ss_pred HHHHHhCC-CCCCCCCCCCC----CHHHHHHHcCCHHHHHHHHhCCCCCCCc-CC------------------CC-----
Confidence 99999753 34455566677 9999999999999999998765322111 11 11
Q ss_pred hhhhcccccCCChhhhhhhhhhhhhhccCCCHHHHHHHhhhhcccccCCCHHHHHHHHhhhhhcCCCCCcchhhhhhhhh
Q psy9003 475 VDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDEC 554 (1276)
Q Consensus 475 v~~~~~a~~~~~~e~~~~lv~~~~~~~~~~~~~~~~~~~t~~~~a~~~g~~e~~~~lv~~~~~~~~~~t~~~l~~~~~~~ 554 (1276)
.|..|.|..+|..|.+++|++...++|.... ...|+.+.|+..|+.|++++|++...+.+..+. ...|..
T Consensus 213 ~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~-----~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~-----~g~t~L 282 (437)
T 1n11_A 213 YTPLHIAAKQNQVEVARSLLQYGGSANAESV-----QGVTPLHLAAQEGHAEMVALLLSKQANGNLGNK-----SGLTPL 282 (437)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT-----TCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCT-----TCCCHH
T ss_pred CCHHHHHHHcCCHHHHHHHHHcCCCCCCCCC-----CCCCHHHHHHHCCCHHHHHHHHhcCCCCCCCCC-----CCCCHH
Confidence 3566777777888888888887777665443 335777888888888888888888777775544 334555
Q ss_pred hccccCCCHHHHHHHHHhhhhccCCCChhhhhhhhhhhcccccCCCHHHHHHHHhhhhhccCCCChhhhhhhHHHhhhcc
Q psy9003 555 HKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAG 634 (1276)
Q Consensus 555 ~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 634 (1276)
+.|...|+++.+++|++.++++|.....- .|..+.|..+|+++.+++|++.++++|.+-..- .++++.|.
T Consensus 283 ~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g-----~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g-----~t~L~~A~ 352 (437)
T 1n11_A 283 HLVAQEGHVPVADVLIKHGVMVDATTRMG-----YTPLHVASHYGNIKLVKFLLQHQADVNAKTKLG-----YSPLHQAA 352 (437)
T ss_dssp HHHHHHTCHHHHHHHHHHTCCTTCCCSSC-----CCHHHHHHHSSCSHHHHHHHHTTCCTTCCCTTS-----CCHHHHHH
T ss_pred HHHHHcCCHHHHHHHHhCCccCCCCCCCC-----CCHHHHHHHcCcHHHHHHHHhcCCCCCCCCCCC-----CCHHHHHH
Confidence 66667888888888888887777322211 345555557888888888888888887654433 56677777
Q ss_pred CCCCHHHHHHHHHHHHhhc---CCCChHHHhhhhhhhhhcccCCChhHHHHHHHH
Q psy9003 635 LFGTPEQLKYLVDECHKAG---LFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDE 686 (1276)
Q Consensus 635 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 686 (1276)
.+|+.+.+++|++.-...+ ..|. ++++.|...|+.+.+++|--.
T Consensus 353 ~~g~~~iv~~Ll~~ga~~~~~~~~g~--------t~l~~A~~~g~~~~~~~l~~~ 399 (437)
T 1n11_A 353 QQGHTDIVTLLLKNGASPNEVSSDGT--------TPLAIAKRLGYISVTDVLKVV 399 (437)
T ss_dssp HTTCHHHHHHHHHTTCCSCCCCSSSC--------CHHHHHHHTTCHHHHHHHHHH
T ss_pred HCChHHHHHHHHHCcCCCCCCCCCCC--------CHHHHHHHcCcHHHHHHHHhc
Confidence 7888888888888433322 2332 356677778888888877653
|
| >3hje_A 704AA long hypothetical glycosyltransferase; trehalose biosynthesis, maltooligoside trehalose synthase (M family 13 glycoside hydrolases; 1.90A {Sulfolobus tokodaii str} | Back alignment and structure |
|---|
Probab=99.85 E-value=8e-22 Score=239.26 Aligned_cols=195 Identities=16% Similarity=0.216 Sum_probs=139.5
Q ss_pred ceEEEEecCCccccCccCcHHHHHHhhhhHHHHcCCCCCccceeecccccccccccccceeeccCccccccccccccCCC
Q psy9003 896 LKIYESHVGICTQEQKCASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAESHD 975 (1276)
Q Consensus 896 ~vIYElHVr~ft~~~~~Gtf~gl~ek~LdyLK~LGVna~d~wV~LmP~f~~eew~~~~pi~~l~~~Pi~E~~i~~~~S~~ 975 (1276)
..-|.++ .|+|++++++ ||||++||||+ |||+|++ +. + +
T Consensus 4 ~aTYrlQ---------gGtf~~i~~~-LdyL~~LGvt~----V~LsPi~--------------------e~--~-----~ 42 (704)
T 3hje_A 4 LSTYRLQ---------PMKFSEIRNR-LDYFVELGVTH----LYLSPVL--------------------KA--R-----P 42 (704)
T ss_dssp SEEEEEC---------SCCHHHHHTT-HHHHHHHTCSE----EEECCCE--------------------EE--S-----T
T ss_pred ceEEEeC---------CCCHHHHHHH-HHHHHHCCCCE----EEECCCc--------------------cC--C-----C
Confidence 4667777 3899999986 99999999999 9999443 32 1 2
Q ss_pred cccCCCccccccccccccccccCCCCCCcccccccccccCCCCCccccccccccCCCCCCHHHHHHHHHHHHHcCCEEEE
Q psy9003 976 QALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLYVLL 1055 (1276)
Q Consensus 976 ~~~WGYdp~nyf~~d~~~y~~~S~~~Dp~~~~dap~~~yas~s~hkYt~D~~~ID~~~Gt~eEfK~LV~alHk~GI~VIL 1055 (1276)
..+|||++.||+ +++ |+||+.+||++||++||++||+|||
T Consensus 43 ~s~~GYd~~Dy~---------------------~vd-------------------p~lGt~edfk~LV~~aH~~GI~Vil 82 (704)
T 3hje_A 43 GSTHGYDVVDYN---------------------TIN-------------------DELGGEEEYIRLIDEAKSKGLGIIQ 82 (704)
T ss_dssp TCSSSCSEEEEE---------------------EEC-------------------GGGTHHHHHHHHHHHHHHHTCEEEE
T ss_pred CCCCCCCCcCCC---------------------CcC-------------------ccCCCHHHHHHHHHHHHHCCCEEEE
Confidence 246999999999 444 8899999999999999999999999
Q ss_pred EEeccccCC--cccCCCcCC----CCCCCcccccCCC-CC----------------------------------------
Q psy9003 1056 DVVHSHASK--NVLDGLNEF----DGTQACFFHDGPR-GT---------------------------------------- 1088 (1276)
Q Consensus 1056 DvV~NHt~~--~~~~~~~~f----~g~~~~Yy~~~~~-g~---------------------------------------- 1088 (1276)
|+|+||++. +++|+.... .+....||...++ +.
T Consensus 83 DvV~NH~s~~~~~~wf~d~l~~g~~s~Y~d~F~W~~~~g~v~~P~lg~~~~~y~~~l~~G~i~lY~d~~Pl~p~~~~~~~ 162 (704)
T 3hje_A 83 DIVPNHMAVHHTNWRLMDVLKKGRHSRYYNYFDFYEEEEKIRIPILGDRNFKITYVNDEPYLDYYGNLFPINDEGRNYLN 162 (704)
T ss_dssp EECCSEEECSTTCHHHHHHHHHGGGSGGGGGBCBCTTCSSEEEEEESSCCCEEEEETTEEEEEETTEEEECCTTGGGCTT
T ss_pred eecccccccccchHHHHHHHhcCCCCCCCccccccCCCCceecCcCCCCcccccccccCCceeeccccCCCCcccccccc
Confidence 999999986 443321100 0001122221100 00
Q ss_pred ------------CCCCC-------------CcCCCCCcHHHHHHHHHHHHHHHHhCCCcEEccCCccccccccCCCCCCC
Q psy9003 1089 ------------HPLWD-------------SRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGF 1143 (1276)
Q Consensus 1089 ------------~~~W~-------------g~~LN~~np~Vr~~Iidsl~~Wv~eygVDGFRfD~a~~L~~~d~g~g~~~ 1143 (1276)
...|. -.+||.++|.|++.+.+.+.+| ||||||+|++.+|.
T Consensus 163 ~l~~l~~~Q~Yrl~~w~~~~nyrRff~l~~L~dLn~e~p~V~~~i~~~L~~L----GVdGFRvDaadgL~---------- 228 (704)
T 3hje_A 163 DIEKLLKVQYYELVDWRDYPSYRRFFAVNELIAVRQELEWVFEDSHSKILSF----EVDGYRIDHIDGLF---------- 228 (704)
T ss_dssp CHHHHHHTSSEEEEETTSCCSBCEETTEEEEEEBCTTSHHHHHHHHTTGGGS----CCSEEEETTGGGCS----------
T ss_pred hhhhhhhhhhhhhcccccccccccccccCCchhccCCCHHHHHHHHHHHHHc----CCCEEEEeCcCccc----------
Confidence 00111 1378999999999999999999 99999999999882
Q ss_pred CCCCccccCCCCCchHHHHHHHHHHHHHhhCCCeEEEEEccCCCCCCcccccc--CCcccCcc
Q psy9003 1144 SGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTE--GGTGFDYR 1204 (1276)
Q Consensus 1144 ~~~~~~~~~~~~d~~a~~Fl~el~~~Vr~~~PdvilIAE~~s~~p~~~~p~~~--gglGFD~~ 1204 (1276)
++..||+++++. .|+.++++|......+... |.. |-.||+|.
T Consensus 229 --------------DP~~yl~rLr~~----~~~~~iv~EkIl~~~E~L~-w~v~~gtTgYd~~ 272 (704)
T 3hje_A 229 --------------KPEEYLRRLKNK----IGNKHIFVEKILSIGEKLR-WDFIDGTTGYDFL 272 (704)
T ss_dssp --------------SHHHHHHHHHHH----HTTCEEEECCCCCTTCCCS-CTTSCEESSHHHH
T ss_pred --------------CHHHHHHHHHHh----CCCcEEEEEEeCCCCCcCC-CcccCCcchhHHH
Confidence 245689888753 4789999998755444333 432 44688873
|
| >1m7x_A 1,4-alpha-glucan branching enzyme; alpha/beta barrel, beta sandwich, transferase; 2.30A {Escherichia coli} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 3o7y_A* 3o7z_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=1.3e-20 Score=229.95 Aligned_cols=122 Identities=26% Similarity=0.473 Sum_probs=110.9
Q ss_pred HhhHHHhhccceEec-CC--cEEEEEEccCCceEEEEeeccCCCcc-----e-------EEEEEccCccccceEEEEEec
Q psy9003 57 KFTTSYNKYGIHVQA-DN--SVRCFEWAPSAQQLYLTGNVSLTPWS-----I-------MEEASLSSIKLIQSIQYILTG 121 (1276)
Q Consensus 57 ~Fs~~y~~fGah~~~-~g--g~~f~~wAP~A~~v~l~gdfn~~~w~-----m-------~~~~~~~~~~~g~~yky~i~~ 121 (1276)
+..++|+.||||+.. +| ||+|++|||+|++|.|+|||| +|+ | +|+++||++++|..|||+|.+
T Consensus 6 ~~~~~~~~lGa~~~~~~~~~gv~F~vwAP~A~~V~L~gdfn--~~~~~~~~M~~~~~~GvW~~~v~~~~~g~~Y~f~i~~ 83 (617)
T 1m7x_A 6 THLRPYETLGAHADTMDGVTGTRFSVWAPNARRVSVVGQFN--YWDGRRHPMRLRKESGIWELFIPGAHNGQLYKYEMID 83 (617)
T ss_dssp CCSCGGGTSEEEEEESSSCEEEEEEEECSSCSCEEEEEGGG--TSCTTTCBCCCCTTTTEEEEEEETCCTTCEEEEEEEC
T ss_pred ccccchhcCCceEeccCCcCcEEEEEECCCCCEEEEEEEeC--CCCCceeEeEECCCCCEEEEEEcCCCCCCEEEEEEEc
Confidence 456899999999876 44 899999999999999999994 454 6 999999999999999999988
Q ss_pred CCC---------------CCCccccccc------------------------ccccccC---------CChHHHHHHHHH
Q psy9003 122 VFG---------------TPEQLKYLVD------------------------ECHKAGL---------FGTPEQLKYLVD 153 (1276)
Q Consensus 122 ~~g---------------rp~~as~~~d------------------------e~h~gs~---------~~y~e~a~~li~ 153 (1276)
.+| +|.++|+|+| |+|.+|| .+|++|+++|+|
T Consensus 84 ~~g~~~~~~DPya~~~~~~~~~~s~v~~~~~~~W~~~~~~~~~~~~~~~~iYei~~~~f~~~~~~g~~g~~~~i~~~ll~ 163 (617)
T 1m7x_A 84 ANGNLRLKSDPYAFEAQMRPETASLICGLPEKVVQTEERKKANQFDAPISIYEVHLGSWRRHTDNNFWLSYRELADQLVP 163 (617)
T ss_dssp TTSCEEEECCTTCSSEECTTTCEEECCCCCCCCCCCHHHHHHHSTTSCCEEEEECTTSSCBCTTTCCBCCHHHHHHHHHH
T ss_pred CCCcEEEecCccceeeccCCCceEEEeCCCCCCCCCccccCCCcccCCcEEEEEEHHHhcCCCCCCCccCHHHHHHHHHH
Confidence 777 6789999985 9999996 489999999999
Q ss_pred HHHhcCc------------------------------CCCHHHHHHHHHHHHHcCCC
Q psy9003 154 ECHKAGL------------------------------FGTPEQLKYLVDECHKAGLF 180 (1276)
Q Consensus 154 y~~~~~y------------------------------ygtp~~l~~~vd~~h~~~i~ 180 (1276)
|+|++|+ |||++||+.||++||++||+
T Consensus 164 yl~~lGv~~i~l~Pi~~~~~~~~~GY~~~~y~~~~~~~Gt~~~~~~lv~~~H~~Gi~ 220 (617)
T 1m7x_A 164 YAKWMGFTHLELLPINEHPFDGSWGYQPTGLYAPTRRFGTRDDFRYFIDAAHAAGLN 220 (617)
T ss_dssp HHHHTTCSEEEESCCEECSCGGGTTSSCSEEEEECGGGSCHHHHHHHHHHHHHTTCE
T ss_pred HHHHcCCCEEEecccccCCCCCCCCcccccCCccCccCCCHHHHHHHHHHHHHCCCE
Confidence 9999999 99999999999999999998
|
| >3m07_A Putative alpha amylase; IDP00968, csgid, structural genomics, center for structural genomics of infectious diseases, unknown function; HET: BTB PG4 PGE; 1.40A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=99.68 E-value=3.1e-17 Score=200.41 Aligned_cols=114 Identities=21% Similarity=0.310 Sum_probs=100.2
Q ss_pred hccceEecCCcEEEEEEccCCceEEEEeeccCCCcce------EEEEEccCccccceEEEEEecCC-----------CCC
Q psy9003 64 KYGIHVQADNSVRCFEWAPSAQQLYLTGNVSLTPWSI------MEEASLSSIKLIQSIQYILTGVF-----------GTP 126 (1276)
Q Consensus 64 ~fGah~~~~gg~~f~~wAP~A~~v~l~gdfn~~~w~m------~~~~~~~~~~~g~~yky~i~~~~-----------grp 126 (1276)
.||||...++|++|+||||+|++|.|+++- ..-.| +|+++||++++|+.|||+|.+.. .+|
T Consensus 33 ~lGa~~~~~~~~~F~vwap~a~~v~l~~~~--~~~~m~~~~~g~~~~~~~~~~~g~~Y~y~v~~~~~~~DP~a~~~~~~~ 110 (618)
T 3m07_A 33 SWGAEYIAADVVRFRLWATGQQKVMLRLAG--KDQEMQANGDGWFTLDVAGVTPGTEYNFVLSDGMVVPDPASRAQKTDV 110 (618)
T ss_dssp SSEEEEEETTEEEEEEECTTCSCEEEEETT--EEEECEECSTTEEEEEEETCCTTCEEEEEETTSCEECCTTCSCBSSST
T ss_pred CCCceEecCCcEEEEEECCCCCEEEEEECC--CcccCeecCCEEEEEEeCCCCCCCEEEEEEeCCeEeccccceeeecCC
Confidence 599998777789999999999999999842 22226 99999999999999999996310 167
Q ss_pred Cccccccc----------------------ccccccC---CChHHHHHHHHHHHHhcCc---------------------
Q psy9003 127 EQLKYLVD----------------------ECHKAGL---FGTPEQLKYLVDECHKAGL--------------------- 160 (1276)
Q Consensus 127 ~~as~~~d----------------------e~h~gs~---~~y~e~a~~li~y~~~~~y--------------------- 160 (1276)
.++|+|+| |+|.||| =+|++|++.| ||+|++|+
T Consensus 111 ~~~s~v~d~~~~~w~~~~~~~~~~~~~~iYe~~v~~f~~~G~~~~~~~~L-~yl~~lGv~~v~l~Pi~~~~~~~~~GY~~ 189 (618)
T 3m07_A 111 NGPSYVVDPGSYTWRNTGWKGSRWEQAVVYEMHTGTFTPEGTFRAAIAKL-PYLAELGVTVIEVMPVAQFGGERGWGYDG 189 (618)
T ss_dssp TSCEECCCTTSSCCSCTTCCCCCGGGCCEEEECHHHHSSSCSHHHHHTTH-HHHHHHTCCEEEECCCEECSSSCCCSTTC
T ss_pred CCCEEEEcCccCCCCCccccCCChhhCeEEEEehhhcCCCCCHHHHHHHH-HHHHHcCCCEEEeCChhccCCCCCCCcCc
Confidence 88999997 9999998 6899999998 99999999
Q ss_pred ---------CCCHHHHHHHHHHHHHcCCC
Q psy9003 161 ---------FGTPEQLKYLVDECHKAGLF 180 (1276)
Q Consensus 161 ---------ygtp~~l~~~vd~~h~~~i~ 180 (1276)
|||++||+.||++||++||+
T Consensus 190 ~~~~~~~~~~G~~~~~~~lv~~~H~~Gi~ 218 (618)
T 3m07_A 190 VLLYAPHSAYGTPDDFKAFIDAAHGYGLS 218 (618)
T ss_dssp CEEEEECTTTCCHHHHHHHHHHHHHTTCE
T ss_pred ccccccCcCcCCHHHHHHHHHHHHHCCCE
Confidence 99999999999999999998
|
| >3vgf_A Malto-oligosyltrehalose trehalohydrolase; alpha/beta barrel, alpha-amylas hydrolase; HET: GLC FLC; 2.30A {Sulfolobus solfataricus} PDB: 3vge_A* 3vgd_A* 3vgb_A* 1eh9_A* 3vgh_A* 3vgg_A* 1eha_A | Back alignment and structure |
|---|
Probab=99.67 E-value=4.7e-17 Score=196.54 Aligned_cols=113 Identities=22% Similarity=0.352 Sum_probs=98.9
Q ss_pred ccceEecCCcEEEEEEccCCceEEEEeeccCCCcce------EEEEEccCccccceEEEEEecCC-----------CCCC
Q psy9003 65 YGIHVQADNSVRCFEWAPSAQQLYLTGNVSLTPWSI------MEEASLSSIKLIQSIQYILTGVF-----------GTPE 127 (1276)
Q Consensus 65 fGah~~~~gg~~f~~wAP~A~~v~l~gdfn~~~w~m------~~~~~~~~~~~g~~yky~i~~~~-----------grp~ 127 (1276)
|||+...+ |++|+||||+|++|.|+|+|| ..-.| +|+++||++++|+.|||+|.+.. .+|+
T Consensus 2 lG~~~~~~-~~~f~vwap~a~~v~l~~~~~-~~~~m~~~~~g~w~~~~~~~~~g~~Y~~~~~~~~~~~DP~~~~~~~~~~ 79 (558)
T 3vgf_A 2 FAYKIDGN-EVIFTLWAPYQKSVKLKVLEK-GLYEMERDEKGYFTITLNNVKVRDRYKYVLDDASEIPDPASRYQPEGVH 79 (558)
T ss_dssp -CEEEETT-EEEEEEECTTCSCCEEEETTT-EEEECEECTTCEEEEEESSCCTTCEEEEECTTSCEECCTTCSCCTTCTT
T ss_pred CCeEEeCC-cEEEEEECCCCCEEEEEEecC-ceeecccCCCCEEEEEECCCCCCCEEEEEEeCCccccCcchhhcccCCC
Confidence 89998776 799999999999999999994 11126 99999999999999999997651 1577
Q ss_pred ccccccc-------------------ccccccC---CChHHHHHHHHHHHHhcCc-------------------------
Q psy9003 128 QLKYLVD-------------------ECHKAGL---FGTPEQLKYLVDECHKAGL------------------------- 160 (1276)
Q Consensus 128 ~as~~~d-------------------e~h~gs~---~~y~e~a~~li~y~~~~~y------------------------- 160 (1276)
++|+|+| |+|++|| =+|++|++.| ||+|++|+
T Consensus 80 ~~s~v~d~~~~w~~~~~~~~~~~~iYe~~~~~f~~~G~~~~~~~~l-~~l~~lG~~~v~l~Pi~~~~~~~~~GY~~~~~~ 158 (558)
T 3vgf_A 80 GPSQIIQESKEFNNETFLKKEDLIIYEIHVGTFTPEGTFEGVIRKL-DYLKDLGITAIEIMPIAQFPGKRDWGYDGVYLY 158 (558)
T ss_dssp SCEECCCCCCCCCSSCCCCGGGCCEEEECHHHHSSSCSHHHHHHTH-HHHHHHTCCEEEECCCEECSSSCCCSTTCCEEE
T ss_pred CcccccCCCcCcccccCCCccccEEEEEeHHHhCCCCCHHHHHHHH-HHHHHcCCcEEEECCcccCCCCCCcCccccccc
Confidence 8899987 9999998 4799999987 99999999
Q ss_pred -----CCCHHHHHHHHHHHHHcCCC
Q psy9003 161 -----FGTPEQLKYLVDECHKAGLF 180 (1276)
Q Consensus 161 -----ygtp~~l~~~vd~~h~~~i~ 180 (1276)
|||++||+.||++||++||+
T Consensus 159 ~~~~~~Gt~~d~~~lv~~~h~~Gi~ 183 (558)
T 3vgf_A 159 AVQNSYGGPEGFRKLVDEAHKKGLG 183 (558)
T ss_dssp EECGGGTHHHHHHHHHHHHHHTTCE
T ss_pred ccccccCCHHHHHHHHHHHHHcCCE
Confidence 99999999999999999998
|
| >4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=4.5e-16 Score=172.46 Aligned_cols=290 Identities=13% Similarity=-0.042 Sum_probs=188.5
Q ss_pred ccccCCChHHHHHHHhhhhccCCCCCccccchhhhhhcccccCCCHHHHHHHhhhhhccCCCCcccchhhhhcccccccc
Q psy9003 271 KAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGL 350 (1276)
Q Consensus 271 ~~~~~~~ie~~~yli~e~~~~~~~~~~~~~t~~~~~~~~a~~~gsi~~l~~Lv~~~~~~~~~~~~~~~~~~~~~~~~a~~ 350 (1276)
.|...|++|+||+|++. .+|+-..+. ..+.|++|.|+..|+.|++++|++..-.++..+. ...+..+.+..
T Consensus 31 ~Av~~g~~~~V~~LL~~-Gadvn~~~~---~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~-----~~~~~~~~~~~ 101 (337)
T 4g8k_A 31 KAVQNEDVDLVQQLLEG-GANVNFQEE---EGGWTPLHNAVQMSREDIVELLLRHGADPVLRKK-----NGATPFILAAI 101 (337)
T ss_dssp HHHHTTCHHHHHHHHHH-TCCTTCCCT---TTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT-----TCCCHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHC-CCCCCccCC---CCCcCHHHHHHHcCCHHHHHHHHHcCCchhhhcc-----CCCchhHHHHh
Confidence 44455778888888873 355543332 2244566788889999999999987654442221 12344556667
Q ss_pred CCChhhhHHhhhhhccccC-CCChhhHHHHHhhhcccccCCChhHHHHHhhhccccc---------CCCChhhhhccccc
Q psy9003 351 FGTPEQLKYLVDECHKAGL-FGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAG---------LFGTPEQLKYLVDE 420 (1276)
Q Consensus 351 ~g~ie~~~yLi~~~h~~~~-~~~~e~~~~~~~~~~~a~~~~~id~vkyLi~~~h~~~---------~~~~~~~~~~~vt~ 420 (1276)
.++.+++..|+.....++. +....+ -.+.|...|+++++++|+...-..+ ...+..+. ||
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~d~~g~t------~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~----T~ 171 (337)
T 4g8k_A 102 AGSVKLLKLFLSKGADVNECDFYGFT------AFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGA----TA 171 (337)
T ss_dssp HTCHHHHHHHHTTTCCTTCBCTTCCB------HHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSC----CH
T ss_pred cccchhhHHhhhccchhhhhccCCCC------HHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCC----cH
Confidence 7888899988776554442 222222 2233344689999999996432222 22233455 99
Q ss_pred chhccccCCHhHHHhhcccccccccCCChhhHHHHHHHHhHhccCCChhhHHHhhhhhcccccCCCh-hhhhhhhhhhhh
Q psy9003 421 CHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTP-EQLKYLVDECHK 499 (1276)
Q Consensus 421 lh~a~~~~~~~~~~yli~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~~~~~~~v~~~~~a~~~~~~-e~~~~lv~~~~~ 499 (1276)
||.|+..|+.++|++|+++...++...+...-..|.-.+.. ...+.. +.+++|++.+.+
T Consensus 172 L~~A~~~g~~~~v~~LL~~~gad~n~~d~~g~t~l~~~~~~--------------------~~~~~~~~i~~lLl~~gad 231 (337)
T 4g8k_A 172 LMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLS--------------------SDDSDVEAITHLLLDHGAD 231 (337)
T ss_dssp HHHHHHHTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHH--------------------SCTTTHHHHHHHHHHTTCC
T ss_pred HHHHHHCCCHHHHHHHHhccCCCcCccCCCCCcHHHHHHHH--------------------cCcccHHHHHHHHHHCCCC
Confidence 99999999999999999876555444433331222111111 112222 345677787777
Q ss_pred hccCCCHHHHHHHhhhhcccccCCCHHHHHHHHhh-hhhcCCCCCcchhhhhhhhhhccccCCCHHHHHHHHHhhhhccC
Q psy9003 500 AGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDE-CHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGL 578 (1276)
Q Consensus 500 ~~~~~~~~~~~~~~t~~~~a~~~g~~e~~~~lv~~-~~~~~~~~t~~~l~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~ 578 (1276)
+|.... ...|+.+.|+..|..+.+++|+.. +.++|.-+. ..-|..+.|...|+.|.+++|++.++++|.
T Consensus 232 ~n~~d~-----~g~t~L~~a~~~~~~~~v~~Ll~~~~~~vn~~d~-----~G~TpL~~A~~~g~~~iv~~Ll~~GAd~n~ 301 (337)
T 4g8k_A 232 VNVRGE-----RGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDS-----DGKTALLLAVELKLKKIAELLCKRGASTDC 301 (337)
T ss_dssp TTCCCG-----GGCCHHHHHHHTTCHHHHHHHHTSTTCCTTCBCT-----TSCBHHHHHHHTTCHHHHHHHHTTSCSSTT
T ss_pred CCCcCC-----CCCCHHHHHHHhhhhHHHHHHHHhcCCcccCcCC-----CCCCHHHHHHHcCCHHHHHHHHHCCCCCCC
Confidence 776554 457889999999999999999975 566664444 345666777799999999999999988774
Q ss_pred CCChhhhhhhhhhhcccccCCCHHHHHHHHhhhhhccCCCC
Q psy9003 579 FGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGT 619 (1276)
Q Consensus 579 ~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~ 619 (1276)
. ++ |.+ |..+|+.|.+++|++.||++|..-+
T Consensus 302 ~--~~-L~~-------A~~~~~~~iv~~Ll~~GA~~d~~~p 332 (337)
T 4g8k_A 302 G--DL-VMT-------ARRNYDHSLVKVLLSHGAKEDFHPP 332 (337)
T ss_dssp C--CH-HHH-------HHHTTCHHHHHHHHHTTCCC-----
T ss_pred C--CH-HHH-------HHHcCCHHHHHHHHHCcCCCCCCCC
Confidence 3 32 333 4478999999999999999987644
|
| >3klk_A Glucansucrase; native form, open conformation, multidomain protein, glycosyltransferase, transferase; 1.65A {Lactobacillus reuteri} PDB: 3kll_A* 3hz3_A* 4amc_A | Back alignment and structure |
|---|
Probab=99.59 E-value=1.1e-15 Score=193.53 Aligned_cols=111 Identities=16% Similarity=0.213 Sum_probs=84.6
Q ss_pred CCceEEEEecC--CccccCccCcHHHHHHhhhhHHHHcCCCCCccceeecccccccccccccceeeccCccccccccccc
Q psy9003 894 DNLKIYESHVG--ICTQEQKCASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYA 971 (1276)
Q Consensus 894 ~d~vIYElHVr--~ft~~~~~Gtf~gl~ek~LdyLK~LGVna~d~wV~LmP~f~~eew~~~~pi~~l~~~Pi~E~~i~~~ 971 (1276)
.+.||||.+.+ .+.+...+|+|++++++ |||||+||||+ |||||+|++.. +....
T Consensus 662 ~~~VIYEGFt~~~~~~~~~~~gt~~gi~~k-ldyLk~LGVta----IwL~Pi~~~~~-----------~~~~~------- 718 (1039)
T 3klk_A 662 DSNVIYEGFSNFIYWPTTESERTNVRIAQN-ADLFKSWGITT----FELAPQYNSSK-----------DGTFL------- 718 (1039)
T ss_dssp HTCCEEECCCTTBCCCSSGGGCHHHHHHHT-HHHHHHTTCCE----EECCCCSCBCC-----------CCSSG-------
T ss_pred CCcEEEccccccCCCCCCCCCCCHHHHHHH-HHHHHHcCCCE----EEECccccCCc-----------ccccc-------
Confidence 57999994421 12234567999999996 99999999999 99997775310 00000
Q ss_pred cCCCcccCCCccccccccccccccccCCCCCCcccccccccccCCCCCccccccccccCCCCCCHHHHHHHHHHHHHcCC
Q psy9003 972 ESHDQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGL 1051 (1276)
Q Consensus 972 ~S~~~~~WGYdp~nyf~~d~~~y~~~S~~~Dp~~~~dap~~~yas~s~hkYt~D~~~ID~~~Gt~eEfK~LV~alHk~GI 1051 (1276)
....+|||++.+|| ++. ..++|+||+++|||+||++||++||
T Consensus 719 --~~~~~~GYd~~d~~---------------------~~~---------------~~i~~~~Gt~~efk~lV~alH~~GI 760 (1039)
T 3klk_A 719 --DSIIDNGYAFTDRY---------------------DLG---------------MSTPNKYGSDEDLRNALQALHKAGL 760 (1039)
T ss_dssp --GGTTTCSSSBSCTT---------------------CSS---------------CSSCBTTBCHHHHHHHHHHHHHTTC
T ss_pred --cCcCCCCCCccccc---------------------ccc---------------cCCCCCCCCHHHHHHHHHHHHHCCC
Confidence 12357999999999 222 0244899999999999999999999
Q ss_pred EEEEEEeccccCCc
Q psy9003 1052 YVLLDVVHSHASKN 1065 (1276)
Q Consensus 1052 ~VILDvV~NHt~~~ 1065 (1276)
+||||||+||++..
T Consensus 761 ~VIlDvV~NHta~~ 774 (1039)
T 3klk_A 761 QAIADWVPDQIYNL 774 (1039)
T ss_dssp EEEEEECCSEECCC
T ss_pred EEEEEEccCCcCCC
Confidence 99999999999754
|
| >4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=1.5e-15 Score=168.21 Aligned_cols=283 Identities=15% Similarity=0.023 Sum_probs=193.0
Q ss_pred cccccCCChhHHHHHhhhcccccCCCC-hhhhhcccccchhccccCCHhHHHhhcccccccccCCChhhHHHHHHHHhHh
Q psy9003 384 HKAGLFGTPEQLKYLVDECHKAGLFGT-PEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKA 462 (1276)
Q Consensus 384 ~~a~~~~~id~vkyLi~~~h~~~~~~~-~~~~~~~vt~lh~a~~~~~~~~~~yli~~~~~~~~~~~~e~l~~l~~~~~~~ 462 (1276)
+.|+..|++|+|++|+.. .+++-..+ ..+. ||||.|+..|+.++|++||..+-....... ..
T Consensus 30 ~~Av~~g~~~~V~~LL~~-Gadvn~~~~~~g~----TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~-~~----------- 92 (337)
T 4g8k_A 30 IKAVQNEDVDLVQQLLEG-GANVNFQEEEGGW----TPLHNAVQMSREDIVELLLRHGADPVLRKK-NG----------- 92 (337)
T ss_dssp HHHHHTTCHHHHHHHHHH-TCCTTCCCTTTCC----CHHHHHHHTTCHHHHHHHHHTTCCTTCCCT-TC-----------
T ss_pred HHHHHcCCHHHHHHHHHC-CCCCCccCCCCCc----CHHHHHHHcCCHHHHHHHHHcCCchhhhcc-CC-----------
Confidence 344557889999999864 34543344 3477 999999999999999999976543222211 11
Q ss_pred ccCCChhhHHHhhhhhcccccCCChhhhhhhhhhhhhhccCCCHHHHHHHhhhhcccccCCCHHHHHHHHhhhhhcCCCC
Q psy9003 463 GLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFG 542 (1276)
Q Consensus 463 ~~~~~~~~~~~~v~~~~~a~~~~~~e~~~~lv~~~~~~~~~~~~~~~~~~~t~~~~a~~~g~~e~~~~lv~~~~~~~~~~ 542 (1276)
.+..+.+...+..+.+..+.....+++.... ...|+.+.|+..|.++.+++|+..++++++..
T Consensus 93 ------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~-----~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~ 155 (337)
T 4g8k_A 93 ------------ATPFILAAIAGSVKLLKLFLSKGADVNECDF-----YGFTAFMEAAVYGKVKALKFLYKRGANVNLRR 155 (337)
T ss_dssp ------------CCHHHHHHHHTCHHHHHHHHTTTCCTTCBCT-----TCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCC
T ss_pred ------------CchhHHHHhcccchhhHHhhhccchhhhhcc-----CCCCHHHHHHHcCcHHHHHHHHHcCCCcchhh
Confidence 2334445555666666777777777766554 45788999999999999999999999988543
Q ss_pred Ccc-----hhhhhhhhhhccccCCCHHHHHHHHHh-hhhccCC--CChhhhhhhhhhhcccccCCCHH-HHHHHHhhhhh
Q psy9003 543 TPE-----QLKYLVDECHKAGLFGTPEQLKYLVDE-CHKAGLF--GTPEQLKYLVDECHKAGLFGTPE-QLKYLVDECHK 613 (1276)
Q Consensus 543 t~~-----~l~~~~~~~~~~~~~~~~e~~~~l~~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~e-~~~~l~~~~~~ 613 (1276)
... .-....|..+.|...|++|.+++|++. ++++|.. ....-+.+.+ .+...+..+ .+++|++.+++
T Consensus 156 ~~~~~~~~~~~~g~T~L~~A~~~g~~~~v~~LL~~~gad~n~~d~~g~t~l~~~~----~~~~~~~~~~i~~lLl~~gad 231 (337)
T 4g8k_A 156 KTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHAL----LSSDDSDVEAITHLLLDHGAD 231 (337)
T ss_dssp CCC-----CTTCSCCHHHHHHHHTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHH----HHSCTTTHHHHHHHHHHTTCC
T ss_pred ccccccccccCCCCcHHHHHHHCCCHHHHHHHHhccCCCcCccCCCCCcHHHHHH----HHcCcccHHHHHHHHHHCCCC
Confidence 322 233455677888899999999999975 7888722 2222222211 223344554 67899999999
Q ss_pred ccCCCChhhhhhhHHHhhhccCCCCHHHHHHHHHHHHhhcCCCChHHH-hhhhhhhhhcccCCChhHHHHHHHHHHhhcc
Q psy9003 614 AGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQL-KYLVDECHKAGLFGTPEQLKYLVDECHKAGL 692 (1276)
Q Consensus 614 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 692 (1276)
+|.+-..- .++++.|...|..+.++.|+.... ..+.+. ++-.+++|.|..+|++++|++|++.=+ .-
T Consensus 232 ~n~~d~~g-----~t~L~~a~~~~~~~~v~~Ll~~~~-----~~vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GA--d~ 299 (337)
T 4g8k_A 232 VNVRGERG-----KTPLILAVEKKHLGLVQRLLEQEH-----IEINDTDSDGKTALLLAVELKLKKIAELLCKRGA--ST 299 (337)
T ss_dssp TTCCCGGG-----CCHHHHHHHTTCHHHHHHHHTSTT-----CCTTCBCTTSCBHHHHHHHTTCHHHHHHHHTTSC--SS
T ss_pred CCCcCCCC-----CCHHHHHHHhhhhHHHHHHHHhcC-----CcccCcCCCCCCHHHHHHHcCCHHHHHHHHHCCC--CC
Confidence 88764433 567778888899999999986321 011110 122358999999999999999997422 11
Q ss_pred CCChhHHHhhHHHHhhcccCCCHHHHHHHHHH
Q psy9003 693 FGTPEQLKYLVDECHKAGLFGTPEQLKYLVDE 724 (1276)
Q Consensus 693 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 724 (1276)
+.. +.+|.|..+|+.|.|++|++.
T Consensus 300 n~~--------~~L~~A~~~~~~~iv~~Ll~~ 323 (337)
T 4g8k_A 300 DCG--------DLVMTARRNYDHSLVKVLLSH 323 (337)
T ss_dssp TTC--------CHHHHHHHTTCHHHHHHHHHT
T ss_pred CCC--------CHHHHHHHcCCHHHHHHHHHC
Confidence 111 368889999999999999863
|
| >1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 | Back alignment and structure |
|---|
Probab=99.58 E-value=2.7e-15 Score=159.07 Aligned_cols=271 Identities=13% Similarity=-0.004 Sum_probs=185.9
Q ss_pred hhhhhcccccCCCHHHHHHHhhhhhccCCCCcccchhhhhccccccccCCChhhhHHhhhhhccccC-CCChhhHHHHHh
Q psy9003 303 LVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGL-FGTPEQLKYLVD 381 (1276)
Q Consensus 303 ~~~~~~~a~~~gsi~~l~~Lv~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~ie~~~yLi~~~h~~~~-~~~~e~~~~~~~ 381 (1276)
+.|..+.|+..|+++.+++|++....++.... ....|..+.|+..|++|+|++|++..-..+. +.......+.
T Consensus 5 g~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~----~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~-- 78 (285)
T 1wdy_A 5 DNHLLIKAVQNEDVDLVQQLLEGGANVNFQEE----EGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLL-- 78 (285)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTTCCTTCCCT----TTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHH--
T ss_pred cchHHHHHHHcCCHHHHHHHHHcCCCcccccC----CCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHH--
Confidence 34556777788888888888877544432211 1123566777888899999999876543332 2222222222
Q ss_pred hhcccccCCChhHHHHHhhhcccccCCCChhhhhcccccchhccccCCHhHHHhhcccccccccCCChhhHHHHHHHHhH
Q psy9003 382 ECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHK 461 (1276)
Q Consensus 382 ~~~~a~~~~~id~vkyLi~~~h~~~~~~~~~~~~~~vt~lh~a~~~~~~~~~~yli~~~~~~~~~~~~e~l~~l~~~~~~ 461 (1276)
|...|+++++++|+.. .+++-..+.++. ||||.|+..|+.+++++|+..+............ ...
T Consensus 79 ----A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~----t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~------~~~ 143 (285)
T 1wdy_A 79 ----AAIAGSVKLLKLFLSK-GADVNECDFYGF----TAFMEAAVYGKVKALKFLYKRGANVNLRRKTKED------QER 143 (285)
T ss_dssp ----HHHHTCHHHHHHHHHT-TCCTTCBCTTCC----BHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHH------HHH
T ss_pred ----HHHcCCHHHHHHHHHc-CCCCCccCcccC----CHHHHHHHhCCHHHHHHHHHhCCCcccccccHHH------HHh
Confidence 2335889999999974 334445566677 9999999999999999999876544333221110 000
Q ss_pred hccCCChhhHHHhhhhhcccccCCChhhhhhhhhh-hhhhccCCCHHHHHHHhhhhcccccCCC----HHHHHHHHhhhh
Q psy9003 462 AGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDE-CHKAGLFGTPEQLKYLVDECHKAGLFGT----PEQLKYLVDECH 536 (1276)
Q Consensus 462 ~~~~~~~~~~~~~v~~~~~a~~~~~~e~~~~lv~~-~~~~~~~~~~~~~~~~~t~~~~a~~~g~----~e~~~~lv~~~~ 536 (1276)
. +... .|..|.|...|..|.+++|++. ..+++.... ...|+.+.|+..|. .+++++|++.+.
T Consensus 144 ~---~~~g-----~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~-----~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~ 210 (285)
T 1wdy_A 144 L---RKGG-----ATALMDAAEKGHVEVLKILLDEMGADVNACDN-----MGRNALIHALLSSDDSDVEAITHLLLDHGA 210 (285)
T ss_dssp T---TCCC-----CCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCT-----TSCCHHHHHHHCSCTTTHHHHHHHHHHTTC
T ss_pred h---ccCC-----CcHHHHHHHcCCHHHHHHHHHhcCCCCCccCC-----CCCCHHHHHHHccccchHHHHHHHHHHcCC
Confidence 0 0001 3677888888999999999986 777776543 34677788888888 999999999998
Q ss_pred hcCCCCCcchhhhhhhhhhccccCCCHHHHHHHHH-hhhhccCCCChhhhhhhhhhhcccccCCCHHHHHHHHhhhhhcc
Q psy9003 537 KAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVD-ECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAG 615 (1276)
Q Consensus 537 ~~~~~~t~~~l~~~~~~~~~~~~~~~~e~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~ 615 (1276)
++|..+. ..-|..+.|...|+.+.+++|++ .++++|.....- -|..+-|...|+.|.+++|++.+++++
T Consensus 211 ~~~~~~~-----~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~~~~g-----~t~l~~A~~~~~~~i~~~Ll~~Ga~~~ 280 (285)
T 1wdy_A 211 DVNVRGE-----RGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDG-----KTALLLAVELKLKKIAELLCKRGASTD 280 (285)
T ss_dssp CSSCCCT-----TSCCHHHHHHHTTCHHHHHHHHHSSSCCTTCCCTTS-----CCHHHHHHHTTCHHHHHHHHHHSSCSC
T ss_pred CCCCcCC-----CCCcHHHHHHHcCCHHHHHHHHhccCCCccccCCCC-----CcHHHHHHHcCcHHHHHHHHHcCCCCC
Confidence 8885544 34455667778999999999999 788888332222 355566668899999999999999987
Q ss_pred CC
Q psy9003 616 LF 617 (1276)
Q Consensus 616 ~~ 617 (1276)
.+
T Consensus 281 ~~ 282 (285)
T 1wdy_A 281 CG 282 (285)
T ss_dssp CS
T ss_pred cc
Confidence 65
|
| >1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 | Back alignment and structure |
|---|
Probab=99.57 E-value=4.4e-15 Score=157.42 Aligned_cols=256 Identities=14% Similarity=-0.025 Sum_probs=173.9
Q ss_pred cccCCChHHHHHHHhhhhccCCCCCccccchhhhhhcccccCCCHHHHHHHhhhhhccCCCCcccchhhhhccccccccC
Q psy9003 272 AGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLF 351 (1276)
Q Consensus 272 ~~~~~~ie~~~yli~e~~~~~~~~~~~~~t~~~~~~~~a~~~gsi~~l~~Lv~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 351 (1276)
|...|++|+|++|++.. .++... ......|.+|.|+..|++|++++|++..-..+.. +. ...|+.+.|+..
T Consensus 12 A~~~g~~~~v~~Ll~~g-~~~~~~---~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~--~~---~g~t~L~~A~~~ 82 (285)
T 1wdy_A 12 AVQNEDVDLVQQLLEGG-ANVNFQ---EEEGGWTPLHNAVQMSREDIVELLLRHGADPVLR--KK---NGATPFLLAAIA 82 (285)
T ss_dssp HHHTTCHHHHHHHHHTT-CCTTCC---CTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCC--CT---TCCCHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHcC-CCcccc---cCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccc--CC---CCCCHHHHHHHc
Confidence 33345566666666542 222222 1123445667788899999999999875433322 11 224667788889
Q ss_pred CChhhhHHhhhhhccccC-CCChhhHHHHHhhhcccccCCChhHHHHHhhhcccccCCC---------Chhhhhcccccc
Q psy9003 352 GTPEQLKYLVDECHKAGL-FGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFG---------TPEQLKYLVDEC 421 (1276)
Q Consensus 352 g~ie~~~yLi~~~h~~~~-~~~~e~~~~~~~~~~~a~~~~~id~vkyLi~~~h~~~~~~---------~~~~~~~~vt~l 421 (1276)
|++|++++|++..-.++. +...... .+.|...|+++++++|+...-..+... +..+. |+|
T Consensus 83 ~~~~~v~~Ll~~g~~~~~~~~~g~t~------L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~----t~L 152 (285)
T 1wdy_A 83 GSVKLLKLFLSKGADVNECDFYGFTA------FMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGA----TAL 152 (285)
T ss_dssp TCHHHHHHHHHTTCCTTCBCTTCCBH------HHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCC----CHH
T ss_pred CCHHHHHHHHHcCCCCCccCcccCCH------HHHHHHhCCHHHHHHHHHhCCCcccccccHHHHHhhccCCC----cHH
Confidence 999999999986543332 2222222 223334689999999998754333222 34455 999
Q ss_pred hhccccCCHhHHHhhcccccccccCCChhhHHHHHHHHhHhccCCChhhHHHhhhhhcccccCCC----hhhhhhhhhhh
Q psy9003 422 HKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGT----PEQLKYLVDEC 497 (1276)
Q Consensus 422 h~a~~~~~~~~~~yli~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~~~~~~~v~~~~~a~~~~~----~e~~~~lv~~~ 497 (1276)
|.|+..|+.+++++|+..........+... .|..|.|...+. .+.+++|++..
T Consensus 153 ~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g-----------------------~t~l~~a~~~~~~~~~~~i~~~Ll~~g 209 (285)
T 1wdy_A 153 MDAAEKGHVEVLKILLDEMGADVNACDNMG-----------------------RNALIHALLSSDDSDVEAITHLLLDHG 209 (285)
T ss_dssp HHHHHHTCHHHHHHHHHTSCCCTTCCCTTS-----------------------CCHHHHHHHCSCTTTHHHHHHHHHHTT
T ss_pred HHHHHcCCHHHHHHHHHhcCCCCCccCCCC-----------------------CCHHHHHHHccccchHHHHHHHHHHcC
Confidence 999999999999999987554443333222 345566666666 77788888888
Q ss_pred hhhccCCCHHHHHHHhhhhcccccCCCHHHHHHHHh-hhhhcCCCCCcchhhhhhhhhhccccCCCHHHHHHHHHhhhhc
Q psy9003 498 HKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVD-ECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKA 576 (1276)
Q Consensus 498 ~~~~~~~~~~~~~~~~t~~~~a~~~g~~e~~~~lv~-~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~e~~~~l~~~~~~~ 576 (1276)
.++|.... ...|+.+.|+..|+++++++|++ .+.++|..+. ..-|..+.|...|+.|.+++|++.++++
T Consensus 210 ~~~~~~~~-----~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~~~-----~g~t~l~~A~~~~~~~i~~~Ll~~Ga~~ 279 (285)
T 1wdy_A 210 ADVNVRGE-----RGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDS-----DGKTALLLAVELKLKKIAELLCKRGAST 279 (285)
T ss_dssp CCSSCCCT-----TSCCHHHHHHHTTCHHHHHHHHHSSSCCTTCCCT-----TSCCHHHHHHHTTCHHHHHHHHHHSSCS
T ss_pred CCCCCcCC-----CCCcHHHHHHHcCCHHHHHHHHhccCCCccccCC-----CCCcHHHHHHHcCcHHHHHHHHHcCCCC
Confidence 88776553 34688999999999999999999 7777775544 3445566677899999999999999998
Q ss_pred cCC
Q psy9003 577 GLF 579 (1276)
Q Consensus 577 ~~~ 579 (1276)
+..
T Consensus 280 ~~~ 282 (285)
T 1wdy_A 280 DCG 282 (285)
T ss_dssp CCS
T ss_pred Ccc
Confidence 854
|
| >3aie_A Glucosyltransferase-SI; beta-alpha-barrels; HET: MES; 2.10A {Streptococcus mutans} PDB: 3aic_A* 3aib_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=2.1e-15 Score=188.89 Aligned_cols=112 Identities=13% Similarity=0.154 Sum_probs=83.3
Q ss_pred CCCceEEEEec--CCccccCccCcHHHHHHhhhhHHHHcCCCCCccceeecccccccccccccceeeccCcccccccccc
Q psy9003 893 PDNLKIYESHV--GICTQEQKCASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAY 970 (1276)
Q Consensus 893 ~~d~vIYElHV--r~ft~~~~~Gtf~gl~ek~LdyLK~LGVna~d~wV~LmP~f~~eew~~~~pi~~l~~~Pi~E~~i~~ 970 (1276)
+.+.||||+.. ++|...+...+|++++++ |||||+||||+ |||||+|+. |... +.
T Consensus 608 ~~~~ViYe~f~~~~s~~~~g~~~~~~gi~~~-l~yLk~LGvt~----I~L~Pi~~~---------------~~~~---~~ 664 (844)
T 3aie_A 608 LDSRVMFEGFSNFQAFATKKEEYTNVVIAKN-VDKFAEWGVTD----FEMAPQYVS---------------STDG---SF 664 (844)
T ss_dssp HHTCCEEECCCTTCCCCSSGGGCHHHHHHHT-HHHHHHTTCCE----EECCCCSCB---------------CCCC---SS
T ss_pred cCceEEEEeCCCcccCCCCCCcccHHHHHHH-HHHHHHCCCCe----EEECCcccC---------------CCCC---cc
Confidence 36799999866 555433333345899986 99999999999 999977653 1100 00
Q ss_pred ccCCCcccCCCccccccccccccccccCCCCCCcccccccccccCCCCCccccccccccCCCCCCHHHHHHHHHHHHHcC
Q psy9003 971 AESHDQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAG 1050 (1276)
Q Consensus 971 ~~S~~~~~WGYdp~nyf~~d~~~y~~~S~~~Dp~~~~dap~~~yas~s~hkYt~D~~~ID~~~Gt~eEfK~LV~alHk~G 1050 (1276)
....++|||++.+|| ++.+ .+.|+||+++||++||++||++|
T Consensus 665 --~~~~~~~GY~~~d~~---------------------~i~e---------------s~~~~~Gt~~df~~lv~~~H~~G 706 (844)
T 3aie_A 665 --LDSVIQNGYAFTDRY---------------------DLGI---------------SKPNKYGTADDLVKAIKALHSKG 706 (844)
T ss_dssp --GGGTTTCSSSBSCTT---------------------CSSC---------------SSCBTTBCHHHHHHHHHHHHHTT
T ss_pred --ccccCCCCCccccCc---------------------cCCC---------------CCCCCCCCHHHHHHHHHHHHHCC
Confidence 012357999999999 3321 01278999999999999999999
Q ss_pred CEEEEEEeccccCCc
Q psy9003 1051 LYVLLDVVHSHASKN 1065 (1276)
Q Consensus 1051 I~VILDvV~NHt~~~ 1065 (1276)
|+||||+|+||++..
T Consensus 707 I~VilD~V~NH~~~~ 721 (844)
T 3aie_A 707 IKVMADWVPDQMYAL 721 (844)
T ss_dssp CEEEEEECCSEECCC
T ss_pred CEEEEEEccCcccCC
Confidence 999999999999743
|
| >2bhu_A Maltooligosyltrehalose trehalohydrolase; alpha-amylase, protein-carbohydrate complex, desiccation resistance; HET: TRS PGE; 1.1A {Deinococcus radiodurans} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 2bhy_A* 2bhz_A* 2bxy_A* 2bxz_A* 2by0_A* 2by1_A* 2by2_A* 2by3_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=3.6e-15 Score=181.83 Aligned_cols=114 Identities=24% Similarity=0.292 Sum_probs=97.7
Q ss_pred hhccceEecCC-cEEEEEEccCCceEEEEeeccCCCcce------EEEEEccCccccceEEEEEecC---C-------CC
Q psy9003 63 NKYGIHVQADN-SVRCFEWAPSAQQLYLTGNVSLTPWSI------MEEASLSSIKLIQSIQYILTGV---F-------GT 125 (1276)
Q Consensus 63 ~~fGah~~~~g-g~~f~~wAP~A~~v~l~gdfn~~~w~m------~~~~~~~~~~~g~~yky~i~~~---~-------gr 125 (1276)
..||||...++ ||+|++|||+|++|.|+|+- ..-.| +|+++|| +++|+.|+|+|.+. + .+
T Consensus 23 ~~lGa~~~~~~~~~~f~vwap~a~~v~l~~~~--~~~~m~~~~~g~w~~~~~-~~~g~~Y~~~v~g~~~~DPya~~~~~~ 99 (602)
T 2bhu_A 23 TRLGATPLPGGAGTRFRLWTSTARTVAVRVNG--TEHVMTSLGGGIYELELP-VGPGARYLFVLDGVPTPDPYARFLPDG 99 (602)
T ss_dssp GCSEEEECGGGCCEEEEEECSSCSSEEEEETT--EEEECEEEETTEEEEEES-CCTTCEEEEEETTEEECCTTCSCCTTC
T ss_pred CCCceEEeCCCCeEEEEEECCCCCEEEEEEcC--CEEeCeeCCCcEEEEEEE-CCCCcEEEEEECCeEecCCCccccCCC
Confidence 46999988854 89999999999999999962 11125 9999999 99999999999540 0 15
Q ss_pred CCccccccc----------------------ccccccC---CChHHHHHHHHHHHHhcCc--------------------
Q psy9003 126 PEQLKYLVD----------------------ECHKAGL---FGTPEQLKYLVDECHKAGL-------------------- 160 (1276)
Q Consensus 126 p~~as~~~d----------------------e~h~gs~---~~y~e~a~~li~y~~~~~y-------------------- 160 (1276)
|.++|+|+| |+|.+|| =+|+.|++.| ||+|++|+
T Consensus 100 ~~~~s~v~d~~~~~w~~~~w~~~~~~~~viYei~~~~f~~~G~~~gi~~~L-~yl~~lGv~~I~L~Pi~~~~~~~~wGY~ 178 (602)
T 2bhu_A 100 VHGEAEVVDFGTFDWTDADWHGIKLADCVFYEVHVGTFTPEGTYRAAAEKL-PYLKELGVTAIQVMPLAAFDGQRGWGYD 178 (602)
T ss_dssp TTSCEECCCTTSSCCCCTTCCCCCGGGCCEEEECHHHHSSSCSHHHHHHTH-HHHHHHTCCEEEECCCEECSSSCCCSTT
T ss_pred CCCCEEEecccccCCCccccccCCcccceEEEEeecccccCCCHHHHHHHH-HHHHHcCCCEEEECChhhccCCCCCCcc
Confidence 677888887 9999998 4899999987 99999988
Q ss_pred ----------CCCHHHHHHHHHHHHHcCCC
Q psy9003 161 ----------FGTPEQLKYLVDECHKAGLF 180 (1276)
Q Consensus 161 ----------ygtp~~l~~~vd~~h~~~i~ 180 (1276)
|||++||+.||++||++||+
T Consensus 179 ~~~y~~~~~~~Gt~~d~~~lv~~~H~~Gi~ 208 (602)
T 2bhu_A 179 GAAFYAPYAPYGRPEDLMALVDAAHRLGLG 208 (602)
T ss_dssp CCEEEEECGGGCCHHHHHHHHHHHHHTTCE
T ss_pred cccCcccCcCCCCHHHHHHHHHHHHHCCCE
Confidence 99999999999999999998
|
| >2vr5_A Glycogen operon protein GLGX; hydrolase, glycosidase, glycosyl hydrolase, glycogen debraching; HET: GLC A16; 2.8A {Sulfolobus solfataricus} PDB: 2vnc_A* 2vuy_A | Back alignment and structure |
|---|
Probab=99.53 E-value=1.8e-14 Score=178.92 Aligned_cols=116 Identities=18% Similarity=0.241 Sum_probs=94.1
Q ss_pred hccceEec-CCcEEEEEEccCCceEEEEeecc-CCCc---c---e------EEEEEccCccccceEEEEEecC----C--
Q psy9003 64 KYGIHVQA-DNSVRCFEWAPSAQQLYLTGNVS-LTPW---S---I------MEEASLSSIKLIQSIQYILTGV----F-- 123 (1276)
Q Consensus 64 ~fGah~~~-~gg~~f~~wAP~A~~v~l~gdfn-~~~w---~---m------~~~~~~~~~~~g~~yky~i~~~----~-- 123 (1276)
-||||... ++||+|+||||+|++|.|++ || +..+ . | +|+++||++++|+.|+|+|.+. +
T Consensus 19 ~lGa~~~~~~~g~~F~vwap~A~~V~l~l-f~~~~~~~~~~~~~m~~~~~gvw~~~v~~~~~g~~Y~y~v~g~~~p~~g~ 97 (718)
T 2vr5_A 19 PLGSNWIEDDDGVNFSLFSENAEKVELLL-YSLTNQKYPKEIIEVKNKTGDIWHVFVPGLRPGQLYAYRVYGPYKPELGL 97 (718)
T ss_dssp SSEEEEEGGGTEEEEEEECSSCSEEEEEE-CCSSCCSSCSEEEEECEESSSEEEEEEETCCTTCEEEEEEECCEETTTTE
T ss_pred CCcceEeeCCCeEEEEEECCCCCEEEEEE-EcCCCCCCcceEEeCccCCCCEEEEEeCCCCCCCEEEEEEeeecCcccCc
Confidence 59999754 45899999999999999999 86 3211 2 5 9999999999999999999873 2
Q ss_pred -------------------------------CCCCc--------------cccccc------------------------
Q psy9003 124 -------------------------------GTPEQ--------------LKYLVD------------------------ 134 (1276)
Q Consensus 124 -------------------------------grp~~--------------as~~~d------------------------ 134 (1276)
|+|.+ +|+|+|
T Consensus 98 ~~~~~~~~~DPya~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~s~v~d~~~~W~~~~~~~~~~~~~~~~vIY 177 (718)
T 2vr5_A 98 RFNPNKVLIDPYAKAINGSVIWNDAVFGYKIGDQNQDLTYDERDSGEYVPKSVVINPYFEWDDEDFIKGKKVPLKDTVIY 177 (718)
T ss_dssp ECCTTSCBCCTTCSCBCSCCCCCGGGSSSCSSCTTTTTSCCCCCCTTTSCCEECCCCCCCCTTGGGGSSSCCCTTSCCEE
T ss_pred ccCCCceEcCcCccccccCccccccccccccCCcccccccccccccccccceEEecCCcCCCccccccCCCCChhHCEEE
Confidence 23432 677764
Q ss_pred ccccccCC------------ChHHHHHH-HHHHHHhcCc---------------------------------------CC
Q psy9003 135 ECHKAGLF------------GTPEQLKY-LVDECHKAGL---------------------------------------FG 162 (1276)
Q Consensus 135 e~h~gs~~------------~y~e~a~~-li~y~~~~~y---------------------------------------yg 162 (1276)
|+|.+||. +|+.|+++ ++||+|++|+ ||
T Consensus 178 eihv~~f~~~~~~~~~~~~Gt~~gi~~~~~l~yLk~LGvt~I~L~Pi~~~~~~~~~~~~g~~~~wGY~~~~y~~~~~~yG 257 (718)
T 2vr5_A 178 EVHVKGFTKLRLDLPENIRGTYEGLASEQMISYLKDLGITTVELMPVFHFIDQRFLTDKGLTNYWGYDPINFFSPECRYS 257 (718)
T ss_dssp EECTTTTTTTCTTSCTTSTTSHHHHTSHHHHHHHHHHTCCEEEECCCBCBCCCHHHHTTTCCCSSCCCBSCSSSBCGGGC
T ss_pred EEEcchhhcCCCCCCcccCcCHHHHhcchhhHHHHHcCCCeEEEeCCEecCccccccccCCcCccCcCcccCcccChhhc
Confidence 99999974 69999997 9999999976 78
Q ss_pred C-------HHHHHHHHHHHHHcCCC
Q psy9003 163 T-------PEQLKYLVDECHKAGLF 180 (1276)
Q Consensus 163 t-------p~~l~~~vd~~h~~~i~ 180 (1276)
| ++||+.||++||++||+
T Consensus 258 t~~~~~~~~~dfk~lv~~~H~~Gi~ 282 (718)
T 2vr5_A 258 STGCLGGQVLSFKKMVNELHNAGIE 282 (718)
T ss_dssp SSCTTTHHHHHHHHHHHHHHTTTCE
T ss_pred CCCCCCchHHHHHHHHHHHHHCCCE
Confidence 8 68888888888888887
|
| >4aio_A Limit dextrinase; hydrolase, pullulanase, glycoside hydrolase family 13; 1.90A {Hordeum vulgare} PDB: 2x4c_A* 2y4s_A* 2y5e_A* 2x4b_A | Back alignment and structure |
|---|
Probab=99.53 E-value=5.3e-15 Score=185.68 Aligned_cols=157 Identities=19% Similarity=0.154 Sum_probs=107.1
Q ss_pred ccceEecCCcEEEEEEccCCceEEEEeeccCCCcc------e------EEEEEccCccccceEEEEEecCCC--------
Q psy9003 65 YGIHVQADNSVRCFEWAPSAQQLYLTGNVSLTPWS------I------MEEASLSSIKLIQSIQYILTGVFG-------- 124 (1276)
Q Consensus 65 fGah~~~~gg~~f~~wAP~A~~v~l~gdfn~~~w~------m------~~~~~~~~~~~g~~yky~i~~~~g-------- 124 (1276)
||||...+ ||+|+||||+|++|.|++.++ +|+ | +|+++||++++|+.|+|+|.+.++
T Consensus 129 lGa~~~~~-g~~F~vwAp~A~~V~l~l~~~--~~~~~~~~~~~~~~~g~W~~~~~~~~~g~~Y~y~v~~~~~~~~~~~~~ 205 (884)
T 4aio_A 129 LGAVFSED-SVSLHLWAPTAQGVSVCFFDG--PAGPALETVQLKESNGVWSVTGPREWENRYYLYEVDVYHPTKAQVLKC 205 (884)
T ss_dssp CEEEECSS-EEEEEEECTTCSEEEEEEEST--TTSCEEEEEECEEETTEEEEEEEGGGTTCEEEEEEEEEETTTTEEEEE
T ss_pred ccCEEECC-EEEEEEECCCCCEEEEEEEeC--CCCCeeeeeeecCCCCEEEEEECCCCCCCEEEEEEeCCCCCcccccCc
Confidence 99998655 599999999999999999774 343 2 999999999999999999975433
Q ss_pred -----------CCCccccccc------------------------------ccccccC------------CChHH-----
Q psy9003 125 -----------TPEQLKYLVD------------------------------ECHKAGL------------FGTPE----- 146 (1276)
Q Consensus 125 -----------rp~~as~~~d------------------------------e~h~gs~------------~~y~e----- 146 (1276)
+|+..|.|+| |||+|+| -+|..
T Consensus 206 ~~~DPya~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~vIYE~HVr~ft~~~~~~~~~~~Gtf~g~~~~~ 285 (884)
T 4aio_A 206 LAGDPYARSLSANGARTWLVDINNETLKPASWDELADEKPKLDSFSDITIYELHIRDFSAHDGTVDSDSRGGFRAFAYQA 285 (884)
T ss_dssp EECCTTCSEESGGGSSEECCCTTCGGGSCTTGGGGGGTSCCCSCGGGCCEEEECHHHHHTTCTTSCTTTTTSGGGGSCTT
T ss_pred cccCCCeeeeccCCCCeeEecCccCccCcccccccccccCCCCCcccCEEEEEEcCccccCCCCCCccccCcccccccch
Confidence 2333444443 9999974 24544
Q ss_pred -HHHHHHHHHHhcCc----------CCCHH---HHHHHHHHHHHcCCCCCchhhhHHHHhhhccc---------------
Q psy9003 147 -QLKYLVDECHKAGL----------FGTPE---QLKYLVDECHKAGLFGTPEQLKYLVDECHKAG--------------- 197 (1276)
Q Consensus 147 -~a~~li~y~~~~~y----------ygtp~---~l~~~vd~~h~~~i~~~~~~~~~~~~~~~~~~--------------- 197 (1276)
.+.+.|||||++|+ |.+.+ .--.+.|.||-...+|+.+.++.|+...++-+
T Consensus 286 ~~~ie~L~yLk~LGVtaveLmPv~e~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~l~~~~~~~~~~~WGYd~~~y~a~~ 365 (884)
T 4aio_A 286 SAGMEHLRKLSDAGLTHVHLLPSFHFAGVDDIKSNWKFVDECELATFPPGSDMQQAAVVAIQEEDPYNWGYNPVLWGVPK 365 (884)
T ss_dssp SHHHHHHHHHHHHTCCEEEECCCEEESSSCSCGGGCCCCCHHHHTTSCTTCSHHHHHHHHHTTTSSCCCCCCEEEEEEEC
T ss_pred hhHHHHhHHHHHcCCCEEEeccccccCccccccccccccccccccccCCchHHHHhhhhhhhhccccccCcCcccccCCC
Confidence 45677999999999 22111 11123345555555555555555555444332
Q ss_pred -ccCC-------HHHHHHHHhhcccccCCCCcchh
Q psy9003 198 -LFGT-------PEQLKYLVDECHKAGLFGTPEQL 224 (1276)
Q Consensus 198 -~~~~-------~~~~~~~~~~~~~~~~~~~~~~~ 224 (1276)
-||| ++++|.||++||..++.==.|+|
T Consensus 366 ~~ygt~~d~~~~~~efk~LV~~aH~~GIkVIlDvV 400 (884)
T 4aio_A 366 GSYASDPDGPSRIIEYRQMVQALNRIGLRVVMDVV 400 (884)
T ss_dssp GGGSSCSSTTHHHHHHHHHHHHHHHTTCEEEEEEC
T ss_pred cccccCccccchHHHHHHHHHHHHhcCCceeeeec
Confidence 2455 66799999999999953334443
|
| >1wzl_A Alpha-amylase II; pullulan, GH-13, alpha-amylase family, hydrolase; 2.00A {Thermoactinomyces vulgaris} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 1ji2_A 1bvz_A 1vfk_A* 3a6o_A* 1wzm_A 1jf6_A 1wzk_A 2d2o_A* 1jib_A* 1jl8_A* 1vb9_A* 1g1y_A* 1vfo_A* 1vfm_A* 1vfu_A* 1jf5_A | Back alignment and structure |
|---|
Probab=99.52 E-value=1.1e-14 Score=176.80 Aligned_cols=122 Identities=17% Similarity=0.188 Sum_probs=96.5
Q ss_pred hhHHHhhccceEecCC-cEEEEEEccCCceEEE-Eeecc-CCC--cc---e----------EEEEEccCccccceEEEEE
Q psy9003 58 FTTSYNKYGIHVQADN-SVRCFEWAPSAQQLYL-TGNVS-LTP--WS---I----------MEEASLSSIKLIQSIQYIL 119 (1276)
Q Consensus 58 Fs~~y~~fGah~~~~g-g~~f~~wAP~A~~v~l-~gdfn-~~~--w~---m----------~~~~~~~~~~~g~~yky~i 119 (1276)
|.+....||+....+. ++||++|||+|++|.| +|||| |++ |. | +|+++||+...|..|||+|
T Consensus 7 ~h~~~~~~~~~~~~~~~~i~~~~~~~~a~~V~l~~~d~~~~~~~~~~~~~m~~~~~~~~~~~w~~~i~~~~~~~~Y~f~i 86 (585)
T 1wzl_A 7 FHEAKGSYAYPISETQLRVRLRAKKGDVVRCEVLYADRYASPEEELAHALAGKAGSDERFDYFEALLECSTKRVKYVFLL 86 (585)
T ss_dssp BCCSSTTTEEEEETTEEEEEEEEETTTCSEEEEEEECTTCCTTSCCEEEECEEEEECSSEEEEEEEEECTTSCEEEEEEE
T ss_pred EecCCCCceeecCCCEEEEEEEECCCCccEEEEEECCCcCCCCCceEEEEEEEeecCCCEEEEEEEEECCCCeEEEEEEE
Confidence 4455677888876533 8999999999999999 89997 754 33 5 5999999999999999999
Q ss_pred ecCCC-----CC-----------------Cccc------------cccc--------------ccccccC----------
Q psy9003 120 TGVFG-----TP-----------------EQLK------------YLVD--------------ECHKAGL---------- 141 (1276)
Q Consensus 120 ~~~~g-----rp-----------------~~as------------~~~d--------------e~h~gs~---------- 141 (1276)
.+.+| .| ...+ +||- |.|+++|
T Consensus 87 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~viYqi~~~~F~~~~~~~~~~~~~~w~~~~~~~~~~ 166 (585)
T 1wzl_A 87 TGPQGEAVYFGETGFSAERSKAGVFQYAYIHRSEVFTTPEWAKEAVIYQIFPERFANGDPSNDPPGTEQWAKDARPRHDS 166 (585)
T ss_dssp ECTTSCEEEEETTEEESSHHHHCCEEECCCCGGGSCCCCSGGGGCCEEEECGGGTCCCCGGGCCTTCCCCCTTCCCCTTC
T ss_pred EeCCCcEEEEcCCcccccCCcCcceeeeeeccccccCCcchhccceEEEEcchhhcCCCcccccccccccCccCCCcccc
Confidence 97755 11 1111 1110 4555544
Q ss_pred -C--ChHHHHHHHHHHHHhcCc----------------------------CCCHHHHHHHHHHHHHcCCC
Q psy9003 142 -F--GTPEQLKYLVDECHKAGL----------------------------FGTPEQLKYLVDECHKAGLF 180 (1276)
Q Consensus 142 -~--~y~e~a~~li~y~~~~~y----------------------------ygtp~~l~~~vd~~h~~~i~ 180 (1276)
+ +|++|++.| ||+|++|+ |||++||++||++||++||+
T Consensus 167 f~~G~~~gi~~~L-dyLk~LGvt~I~L~Pi~~~~~~~GYd~~dy~~id~~~Gt~~dfk~lv~~~H~~Gi~ 235 (585)
T 1wzl_A 167 FYGGDLKGVIDRL-PYLEELGVTALYFTPIFASPSHHKYDTADYLAIDPQFGDLPTFRRLVDEAHRRGIK 235 (585)
T ss_dssp CCCCCHHHHHHTH-HHHHHHTCCEEEECCCEECSSSSCCSCSEEEEECTTTCCHHHHHHHHHHHHTTTCE
T ss_pred cCCCCHHHHHHHh-HHHHHcCCCEEEECCcccCCCCCCcCcccccccCcccCCHHHHHHHHHHHHHCCCE
Confidence 3 799999997 99999998 99999999999999999998
|
| >1ea9_C Cyclomaltodextrinase; hydrolase, glycosidase; 3.2A {Bacillus SP} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 | Back alignment and structure |
|---|
Probab=99.50 E-value=7.3e-15 Score=178.23 Aligned_cols=119 Identities=18% Similarity=0.264 Sum_probs=95.1
Q ss_pred HHhhccceEecCC-cEEEEEEccCCceEEE-Eeecc-CCC-cc---e----------EEEEEccCccccceEEEEEecCC
Q psy9003 61 SYNKYGIHVQADN-SVRCFEWAPSAQQLYL-TGNVS-LTP-WS---I----------MEEASLSSIKLIQSIQYILTGVF 123 (1276)
Q Consensus 61 ~y~~fGah~~~~g-g~~f~~wAP~A~~v~l-~gdfn-~~~-w~---m----------~~~~~~~~~~~g~~yky~i~~~~ 123 (1276)
....||+....+. ++||++|||+|++|.| +|||| |++ |. | +|+++||+...|..|||+|.+.+
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~a~~V~l~~~d~~~~~~~~~~~~M~~~~~~~~~~~w~~~i~~~~~~~~Y~f~i~~~~ 89 (583)
T 1ea9_C 10 PRKNFSYAYNGTTVHLRIRTKKDDMTAVYALAGDKYMWDHTMEYVPMTKLATDELFDYWECEVTPPYRRVKYGFLLQQGH 89 (583)
T ss_dssp SSTTSSEESSSSCEECCCEECTTCCSBEEEEEECSSSCTTTCEEEEECEEEECSSCEEECCEECCTTSCEEECBCCEETT
T ss_pred CCCCceEecCCCEEEEEEEECCCCccEEEEEECCCcCCCCcEEEEEEEEEeccCCeEEEEEEEECCCceEEEEEEEEeCC
Confidence 3445666543322 7889999999999999 89997 654 44 6 59999999999999999888655
Q ss_pred C------------CCCccccccc-------------------------------------ccccccC----------C--
Q psy9003 124 G------------TPEQLKYLVD-------------------------------------ECHKAGL----------F-- 142 (1276)
Q Consensus 124 g------------rp~~as~~~d-------------------------------------e~h~gs~----------~-- 142 (1276)
| +|.++|.+++ |.|++|| +
T Consensus 90 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~viYqi~~~~F~~~~~~~~~~~~~~w~~~~~~~~~~~~G 169 (583)
T 1ea9_C 90 EKRWMTEYDFLTEPPANPDRLFEYPFINPVDVFQPPAWVKDAIFYQIFPERFANGDTRNDPEGTLPWGSADPTPSCFFGG 169 (583)
T ss_dssp EECCBCSSSBCSSCCSCGGGSEEECCCCTTTSCCCCTHHHHCCCCEECSTTSCCCCSCSCSSCCSCCCSSSCCCSSCCCC
T ss_pred EEEEEeCCCccccCcccCCcceeeeeecccccCCCCcccccceEEEEchHHhcCCCCccCccccccccCCCCcccccCCc
Confidence 4 5677765442 3444444 3
Q ss_pred ChHHHHHHHHHHHHhcCc----------------------------CCCHHHHHHHHHHHHHcCCC
Q psy9003 143 GTPEQLKYLVDECHKAGL----------------------------FGTPEQLKYLVDECHKAGLF 180 (1276)
Q Consensus 143 ~y~e~a~~li~y~~~~~y----------------------------ygtp~~l~~~vd~~h~~~i~ 180 (1276)
+|+.|++.| ||+|++|+ |||++||++||++||++||+
T Consensus 170 d~~gi~~~L-dyLk~LGvt~I~L~Pi~~~~~~~GYd~~dy~~idp~~Gt~~df~~lv~~~H~~Gi~ 234 (583)
T 1ea9_C 170 DLQGVIDHL-DHLSKLGVNAVYFTPLFKATTNHKYDTEDYFQIDPQFGDKDTLKKLVDLCHERGIR 234 (583)
T ss_dssp CHHHHHHTH-HHHHHHTCSEEEECCCSSCSSSSTTSCSCTTCCCTTTCCHHHHHHHHHHHTTTTCE
T ss_pred CHHHHHHhh-HHHHHcCCCEEEECCCccCCCCCCcCcccccccCcccCCHHHHHHHHHHHHHCCCE
Confidence 799999997 99999998 99999999999999999998
|
| >3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.49 E-value=2.6e-14 Score=156.34 Aligned_cols=148 Identities=14% Similarity=0.012 Sum_probs=87.8
Q ss_pred cccccCCChHHHHHHHhhhhccCCCCCccccchhhhhhcccccCCCHHHHHHHhhhhhccCCCCcccchhhhhccccccc
Q psy9003 270 HKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAG 349 (1276)
Q Consensus 270 h~~~~~~~ie~~~yli~e~~~~~~~~~~~~~t~~~~~~~~a~~~gsi~~l~~Lv~~~~~~~~~~~~~~~~~~~~~~~~a~ 349 (1276)
|.|...|++|.|++|+.+...++-..+..|. |.+|.|+..|+++++++|++..-.++ ..+. ...|+.+.|+
T Consensus 29 ~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~----t~L~~A~~~g~~~~v~~Ll~~g~~~~--~~~~---~g~t~L~~A~ 99 (351)
T 3utm_A 29 LEAARSGNEEKLMALLTPLNVNCHASDGRKS----TPLHLAAGYNRVRIVQLLLQHGADVH--AKDK---GGLVPLHNAC 99 (351)
T ss_dssp HHHHHHTCHHHHHHHCCTTTTTCCCSSTTCC----CHHHHHHHTTCHHHHHHHHHTTCCTT--CCCT---TCCCHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHhcCCCcccCCCCCC----CHHHHHHHcCCHHHHHHHHHcCCCCC--ccCC---CCCcHHHHHH
Confidence 3444456666666666655455444444444 44466777899999999988654333 2221 2346667788
Q ss_pred cCCChhhhHHhhhhhccccC-CCChhhHHHHHhhhcccccCCChhHHHHHhhhcccccCCCChhhhhcccccchhccccC
Q psy9003 350 LFGTPEQLKYLVDECHKAGL-FGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFG 428 (1276)
Q Consensus 350 ~~g~ie~~~yLi~~~h~~~~-~~~~e~~~~~~~~~~~a~~~~~id~vkyLi~~~h~~~~~~~~~~~~~~vt~lh~a~~~~ 428 (1276)
..|++|+|++|++....++. +...... .+.|...|++|++++|+.. ..++...+..+. |++|.|+..+
T Consensus 100 ~~g~~~iv~~Ll~~g~~~~~~~~~g~t~------L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~----~~l~~a~~~~ 168 (351)
T 3utm_A 100 SYGHYEVTELLLKHGACVNAMDLWQFTP------LHEAASKNRVEVCSLLLSH-GADPTLVNCHGK----SAVDMAPTPE 168 (351)
T ss_dssp HTTCHHHHHHHHHTTCCTTCCCTTCCCH------HHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSC----CHHHHCSSHH
T ss_pred HCCCHHHHHHHHHCCCCCCCCCCCCCCH------HHHHHHcCCHHHHHHHHHc-CCCCccccCCCC----cchHHHhhhh
Confidence 88888888888876544432 2212211 2222335778888888764 344555555666 7777777666
Q ss_pred CHhHHHhhc
Q psy9003 429 TPEQLKYLV 437 (1276)
Q Consensus 429 ~~~~~~yli 437 (1276)
..+.+++++
T Consensus 169 ~~~~~~~~~ 177 (351)
T 3utm_A 169 LRERLTYEF 177 (351)
T ss_dssp HHHHHHHHH
T ss_pred hHHHHHhhh
Confidence 666655544
|
| >2wsk_A Glycogen debranching enzyme; carbohydrate metabolism, hydrolase, glycosidase, ISO-amylase glycosyl hydrolase, glycogen metabolism; 2.25A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=99.49 E-value=2.7e-14 Score=175.66 Aligned_cols=114 Identities=18% Similarity=0.232 Sum_probs=94.3
Q ss_pred hhccceEecCCcEEEEEEccCCceEEEEeeccCCCcc------e------EEEEEccCccccceEEEEEecC----CC--
Q psy9003 63 NKYGIHVQADNSVRCFEWAPSAQQLYLTGNVSLTPWS------I------MEEASLSSIKLIQSIQYILTGV----FG-- 124 (1276)
Q Consensus 63 ~~fGah~~~~gg~~f~~wAP~A~~v~l~gdfn~~~w~------m------~~~~~~~~~~~g~~yky~i~~~----~g-- 124 (1276)
.-||||... +|++|+||||+|++|.|++ | ++++ | +|+++||++++|+.|+|+|.+. +|
T Consensus 10 ~~lGa~~~~-~g~~F~vwap~A~~V~l~~-f--~~~~~~~~~~m~~~~~g~w~~~v~~~~~g~~Y~y~v~~~~~p~~g~~ 85 (657)
T 2wsk_A 10 APLGAHYDG-QGVNFTLFSAHAERVELCV-F--DANGQEHRYDLPGHSGDIWHGYLPDARPGLRYGYRVHGPWQPAEGHR 85 (657)
T ss_dssp CSSSEEECS-SEEEEEEECSSCSEEEEEE-E--CTTCCEEEEECCEEETTEEEEEEETCCTTCEEEEEEECCCCGGGTCC
T ss_pred CCCCcEEeC-CeEEEEEECCCCCEEEEEE-E--CCCCCEEEEeCcCCCCCEEEEEECCCCCCCEEEEEEeeeecCccCcc
Confidence 359999754 5799999999999999999 9 4432 6 9999999999999999999982 22
Q ss_pred -----------------C----C------------Cc-----cccccc---------------------ccccccC----
Q psy9003 125 -----------------T----P------------EQ-----LKYLVD---------------------ECHKAGL---- 141 (1276)
Q Consensus 125 -----------------r----p------------~~-----as~~~d---------------------e~h~gs~---- 141 (1276)
+ | .+ +|+|+| |+|.+||
T Consensus 86 ~~~~~~~~DPya~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~v~d~~~~W~~~~~~~~~~~~~vIYei~v~~F~~~~ 165 (657)
T 2wsk_A 86 FNPAKLLIDPCARQIDGEFKDNPLLHAGHNEPDYRDNAAIAPKCVVVVDHYDWEDDAPPRTPWGSTIIYEAHVKGLTYLH 165 (657)
T ss_dssp CCTTSCBCCTTCSCEESCCCCCGGGBCCSSSCCCCCCGGGSCEEECCCCCCCCTTCCCCCCCGGGCCEEEECHHHHHTTC
T ss_pred cccceEEcCcCcceecCCccccccccccccccccccccccccceEEeCCCCCCCCCCCCCCCchhcEEEEEEcceeeccC
Confidence 2 1 22 677776 9999985
Q ss_pred --------CChHHHHHH-HHHHHHhcCc---------------------------------------CC-----CHHHHH
Q psy9003 142 --------FGTPEQLKY-LVDECHKAGL---------------------------------------FG-----TPEQLK 168 (1276)
Q Consensus 142 --------~~y~e~a~~-li~y~~~~~y---------------------------------------yg-----tp~~l~ 168 (1276)
-+|+.|+++ ++||+|++|+ || |++||+
T Consensus 166 ~~~~~~~~G~~~gi~~~~~l~yL~~LGvt~i~L~Pi~~~~~~~~~~~~g~~~~wGY~~~~y~~~~~~~G~~p~~~~~d~~ 245 (657)
T 2wsk_A 166 PEIPVEIRGTYKALGHPVMINYLKQLGITALELLPVAQFASEPRLQRMGLSNYWGYNPVAMFALHPAYACSPETALDEFR 245 (657)
T ss_dssp TTSCGGGTTSHHHHTSHHHHHHHHHHTCCEEEESCCEEECCCHHHHTTTCCCSSCCCEEEEEEECGGGCSSGGGHHHHHH
T ss_pred CCCCccCCcCHHHHhcccchHHHHHcCCCEEEECCccccCccccccccccccccCcCcccCCCCCHHHcCCCCcCHHHHH
Confidence 379999997 8999999965 78 469999
Q ss_pred HHHHHHHHcCCC
Q psy9003 169 YLVDECHKAGLF 180 (1276)
Q Consensus 169 ~~vd~~h~~~i~ 180 (1276)
.||++||++||+
T Consensus 246 ~lv~~~H~~Gi~ 257 (657)
T 2wsk_A 246 DAIKALHKAGIE 257 (657)
T ss_dssp HHHHHHHHTTCE
T ss_pred HHHHHHHHCCCE
Confidence 999999999998
|
| >3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} | Back alignment and structure |
|---|
Probab=99.47 E-value=2.3e-14 Score=160.38 Aligned_cols=262 Identities=15% Similarity=0.038 Sum_probs=163.6
Q ss_pred hhhhhcccccCCCHHHHHHHhhhhhccCCCCcccchhhhhccccccccCCChhhhHHhhhhhccccCCCChhhHHHHHhh
Q psy9003 303 LVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDE 382 (1276)
Q Consensus 303 ~~~~~~~a~~~gsi~~l~~Lv~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~ie~~~yLi~~~h~~~~~~~~e~~~~~~~~ 382 (1276)
+.|.++.|+..|+++++++|++..-.++ ..+. ...|..+.|+..|++|+|++|++.....+. ..... -
T Consensus 20 g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~--~~d~---~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~-~~g~t------~ 87 (364)
T 3ljn_A 20 NMEKIHVAARKGQTDEVRRLIETGVSPT--IQNR---FGCTALHLACKFGCVDTAKYLASVGEVHSL-WHGQK------P 87 (364)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHTTCCTT--CCCT---TCCCHHHHHHHHCCHHHHHHHHHHCCCCCC-BTTBC------H
T ss_pred CCCHHHHHHHcCCHHHHHHHHHcCCCcc--ccCC---CCCcHHHHHHHcCCHHHHHHHHHCCCCccc-cCCCC------H
Confidence 3444555666666666666665532222 2111 123445566666666666666665542221 01111 1
Q ss_pred hcccccCCChhHHHHHhhhcc---cccC-----------------CCChhhhhcccccchhccccC--CHhHHHhhcccc
Q psy9003 383 CHKAGLFGTPEQLKYLVDECH---KAGL-----------------FGTPEQLKYLVDECHKAGLFG--TPEQLKYLVDEC 440 (1276)
Q Consensus 383 ~~~a~~~~~id~vkyLi~~~h---~~~~-----------------~~~~~~~~~~vt~lh~a~~~~--~~~~~~yli~~~ 440 (1276)
.+.|...|+.|+|++|+...- .++. ..+.++. |+||.|+..| +.++|++|+..+
T Consensus 88 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~----t~L~~A~~~g~~~~~~v~~Ll~~g 163 (364)
T 3ljn_A 88 IHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQ----TALHWCVGLGPEYLEMIKILVQLG 163 (364)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCC----CHHHHHHHSCGGGHHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCC----CHHHHHHHcCCchHHHHHHHHHcC
Confidence 122223466666666665421 1111 1334455 9999999999 899999998763
Q ss_pred cccccCCChhhHHHHHHHHhHhccCCChhhHHHhhhhhcccccCCChhhhhhhhhhhhh-----hccCCCHHHHHHHhhh
Q psy9003 441 HKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHK-----AGLFGTPEQLKYLVDE 515 (1276)
Q Consensus 441 ~~~~~~~~~e~l~~l~~~~~~~~~~~~~~~~~~~v~~~~~a~~~~~~e~~~~lv~~~~~-----~~~~~~~~~~~~~~t~ 515 (1276)
+++...+.. . .|..|.|..+|..|.+++|++.+.+ +|.... ...|+
T Consensus 164 -a~~~~~d~~------------------g-----~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~-----~g~t~ 214 (364)
T 3ljn_A 164 -ASPTAKDKA------------------D-----ETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANK-----QGNSH 214 (364)
T ss_dssp -CCTTCCCTT------------------S-----CCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCT-----TCCCT
T ss_pred -CCCcccCCC------------------C-----CCHHHHHHHcCCHHHHHHHHhcccccccccccccCC-----CCCcH
Confidence 222222211 1 4677788888888888888888777 665543 34689
Q ss_pred hcccccCCCHHHHHHHHhhhhhcCCCCCcchhhhhhhhhhccccCCCHHHHHHHHHhhhhccC------CCChhhhh-hh
Q psy9003 516 CHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGL------FGTPEQLK-YL 588 (1276)
Q Consensus 516 ~~~a~~~g~~e~~~~lv~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~------~~~~~~~~-~~ 588 (1276)
.+.|+..|+++++++|++.++++|..+. ..-|..+.|...|+.+.+++|++.+++.+. +.+..+.. ..
T Consensus 215 L~~A~~~g~~~~v~~Ll~~gad~~~~d~-----~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (364)
T 3ljn_A 215 LHWAILINWEDVAMRFVEMGIDVNMEDN-----EHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVV 289 (364)
T ss_dssp THHHHTTTCHHHHHHHHTTTCCTTCCCT-----TSCCHHHHHHHTCCHHHHHHHHHHSCHHHHHTCTTBSSSSBCGGGCC
T ss_pred HHHHHHcCCHHHHHHHHHcCCCCCCCCC-----CCCCHHHHHHHhChHHHHHHHHHcCCchhhhcCcccCcccccccccc
Confidence 9999999999999999999988886554 455666777789999999999999888752 11111111 14
Q ss_pred hhhhcccccCCCHHHHHHHHhhhhhc
Q psy9003 589 VDECHKAGLFGTPEQLKYLVDECHKA 614 (1276)
Q Consensus 589 ~~~~~~~~~~~~~e~~~~l~~~~~~~ 614 (1276)
.+....|...|+.+.+..|+....+.
T Consensus 290 ~~~l~~aa~~~~~~~v~~ll~~~~~~ 315 (364)
T 3ljn_A 290 WLDFVPAAADPSKQEVLQLLQEKLDE 315 (364)
T ss_dssp CCTTSCSSCCHHHHHHHHHHHHHHHH
T ss_pred cccchhhhhccCHHHHHHHHHHHHHH
Confidence 55666677888777777777666554
|
| >3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} | Back alignment and structure |
|---|
Probab=99.47 E-value=2.1e-13 Score=149.34 Aligned_cols=208 Identities=13% Similarity=-0.015 Sum_probs=113.7
Q ss_pred ChHHHHHHHhhhhccCCCCCccccchhhhhhcccccCCCHHHHHHHhhhhhccCCCCcccchhhhhccccccccCCChhh
Q psy9003 277 TPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQ 356 (1276)
Q Consensus 277 ~ie~~~yli~e~~~~~~~~~~~~~t~~~~~~~~a~~~gsi~~l~~Lv~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~ie~ 356 (1276)
+.+++++|+.. ++-..+..|. |++|.|+..|+++++++|++..-.++..+ ..|+.|.|+..|++|+
T Consensus 12 ~~~v~~lL~~~---~~~~~d~~g~----t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~-------g~t~L~~A~~~g~~~~ 77 (285)
T 3kea_A 12 SKQLKSFLSSK---DTFKADVHGH----SASYYAIADNNVRLVCTLLNAGALKNLLE-------NEFPLHQAATLEDTKI 77 (285)
T ss_dssp HHHHHHHHHST---TTTCCCTTSC----CHHHHHHHTTCHHHHHHHHHTTGGGSCCT-------TCCHHHHHTTSSSCHH
T ss_pred HHHHHHHHHhC---CCCccCCCCC----CHHHHHHHcCCHHHHHHHHhCCCCCCCCC-------CCCHHHHHHHcCCHHH
Confidence 34555555542 3333444444 45577777899999999998755444332 2466778888888888
Q ss_pred hHHhhhhhccccC-CCChhhHHHHHhhhcccccCCChhHHHHHhhhcccccCCCChhh-hhcccccchhccccCCHhHHH
Q psy9003 357 LKYLVDECHKAGL-FGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQ-LKYLVDECHKAGLFGTPEQLK 434 (1276)
Q Consensus 357 ~~yLi~~~h~~~~-~~~~e~~~~~~~~~~~a~~~~~id~vkyLi~~~h~~~~~~~~~~-~~~~vt~lh~a~~~~~~~~~~ 434 (1276)
|++|++..-.++. +...... .+.|...|++|+|++|+.. ..++-..+..+ . ||||.|+..|+.++++
T Consensus 78 v~~Ll~~ga~~~~~d~~g~t~------L~~A~~~g~~~~v~~Ll~~-ga~~~~~~~~g~~----t~L~~A~~~~~~~~v~ 146 (285)
T 3kea_A 78 VKILLFSGLDDSQFDDKGNTA------LYYAVDSGNMQTVKLFVKK-NWRLMFYGKTGWK----TSFYHAVMLNDVSIVS 146 (285)
T ss_dssp HHHHHHTTCCTTCCCTTSCCH------HHHHHHTTCHHHHHHHHHH-CGGGGGCSSSGGG----SHHHHHHHTTCHHHHH
T ss_pred HHHHHHCCCCCCCcCCCCCcH------HHHHHHcCCHHHHHHHHhc-CCCCCccCCCCCC----CHHHHHHHcCCHHHHH
Confidence 8888875443332 1111211 2222335677777777765 34444444445 5 7777777777777777
Q ss_pred hhcccccccccCCChhhHHHHHHHHhHhccCCChhhHHHhhhhhcccccCCChhhhhhhhhhhhhhccCCCHHHHHHHhh
Q psy9003 435 YLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVD 514 (1276)
Q Consensus 435 yli~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~~~~~~~v~~~~~a~~~~~~e~~~~lv~~~~~~~~~~~~~~~~~~~t 514 (1276)
+|+..+... ... ... .|..|.|..+|..|.+++|++.+.++|.... ...|
T Consensus 147 ~Ll~~g~~~--~~~------------------~~g-----~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~-----~g~t 196 (285)
T 3kea_A 147 YFLSEIPST--FDL------------------AIL-----LSCIHITIKNGHVDMMILLLDYMTSTNTNNS-----LLFI 196 (285)
T ss_dssp HHHTTSCTT--CCC------------------STH-----HHHHHHHHHTTCHHHHHHHHHHHHHTCTTCC-----CBCC
T ss_pred HHHhCCCcc--ccc------------------cCC-----ccHHHHHHHcChHHHHHHHHHcCCCCCcccC-----CCCC
Confidence 777654211 000 001 3444455555555555555555555544332 2233
Q ss_pred h-hcccccCCCHHHHHHHHhhhhhcC
Q psy9003 515 E-CHKAGLFGTPEQLKYLVDECHKAG 539 (1276)
Q Consensus 515 ~-~~~a~~~g~~e~~~~lv~~~~~~~ 539 (1276)
+ .+.|...|+.|++++|++.+++++
T Consensus 197 ~~L~~A~~~~~~~~v~~Ll~~gad~~ 222 (285)
T 3kea_A 197 PDIKLAIDNKDIEMLQALFKYDINIY 222 (285)
T ss_dssp TTHHHHHHHTCHHHHHHHTTSCBCST
T ss_pred hHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence 3 444555555555555555544444
|
| >3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.46 E-value=1e-13 Score=151.63 Aligned_cols=304 Identities=14% Similarity=0.033 Sum_probs=194.6
Q ss_pred chhhhhhcccccCCCHHHHHHHhhhhhccCCCCcccchhhhhccccccccCCChhhhHHhhhhhccccC-CCChhhHHHH
Q psy9003 301 KYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGL-FGTPEQLKYL 379 (1276)
Q Consensus 301 t~~~~~~~~a~~~gsi~~l~~Lv~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~ie~~~yLi~~~h~~~~-~~~~e~~~~~ 379 (1276)
....+.++.|+..|+++.+++|+... .++++..|. ...|..|.|+..|++++|++|++....++. +......
T Consensus 22 ~~~~~~L~~A~~~g~~~~v~~ll~~~-~~~~~~~d~---~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~--- 94 (351)
T 3utm_A 22 EYKKDELLEAARSGNEEKLMALLTPL-NVNCHASDG---RKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVP--- 94 (351)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHCCTT-TTTCCCSST---TCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCH---
T ss_pred cccchhHHHHHHcCCHHHHHHHHHhc-CCCcccCCC---CCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcH---
Confidence 34556778899999999999998753 233333332 234677888999999999999987654442 2222222
Q ss_pred HhhhcccccCCChhHHHHHhhhcccccCCCChhhhhcccccchhccccCCHhHHHhhcccccccccCCChhhHHHHHHHH
Q psy9003 380 VDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDEC 459 (1276)
Q Consensus 380 ~~~~~~a~~~~~id~vkyLi~~~h~~~~~~~~~~~~~~vt~lh~a~~~~~~~~~~yli~~~~~~~~~~~~e~l~~l~~~~ 459 (1276)
.+.|+..|++|+|++|+... .++-..+..+. ||||.|+..|+.+++++|+..+...... +...-..+
T Consensus 95 ---L~~A~~~g~~~iv~~Ll~~g-~~~~~~~~~g~----t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~~g~~~l---- 161 (351)
T 3utm_A 95 ---LHNACSYGHYEVTELLLKHG-ACVNAMDLWQF----TPLHEAASKNRVEVCSLLLSHGADPTLV-NCHGKSAV---- 161 (351)
T ss_dssp ---HHHHHHTTCHHHHHHHHHTT-CCTTCCCTTCC----CHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTSCCHH----
T ss_pred ---HHHHHHCCCHHHHHHHHHCC-CCCCCCCCCCC----CHHHHHHHcCCHHHHHHHHHcCCCCccc-cCCCCcch----
Confidence 23334469999999999864 44455566777 9999999999999999999765332221 21111111
Q ss_pred hHhccCCChhhHHHhh--hhhcccccCCChhhhhhhhhhhhhhccCCCHHHHHHHhhhhcccccC---CCHHHHHHHHhh
Q psy9003 460 HKAGLFGTPEQLKYLV--DECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLF---GTPEQLKYLVDE 534 (1276)
Q Consensus 460 ~~~~~~~~~~~~~~~v--~~~~~a~~~~~~e~~~~lv~~~~~~~~~~~~~~~~~~~t~~~~a~~~---g~~e~~~~lv~~ 534 (1276)
+-+......+.+++.. .....+...+..+.++.+............ ...|..+.|+.. +..+++++|++.
T Consensus 162 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-----~~~t~L~~A~~~~~~~~~~~~~~Ll~~ 236 (351)
T 3utm_A 162 DMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQ-----SHETALHCAVASLHPKRKQVAELLLRK 236 (351)
T ss_dssp HHCSSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCTTCCCTT-----TCCCHHHHHHHCCSTTHHHHHHHHHHT
T ss_pred HHHhhhhhHHHHHhhhcccHHHHHHHhccHHHHHHHHHhhcccccCCC-----CCCCHHHHHHHHhCccHHHHHHHHHHc
Confidence 1111111123333332 334445556666666555544321111110 124566666666 678999999999
Q ss_pred hhhcCCCCCcchhhhhhhhhhccccCCCHHHHHHHHHhhhhccCCCChhhhhhhhhhhcccccCCCHHHHHHHHhhhhhc
Q psy9003 535 CHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKA 614 (1276)
Q Consensus 535 ~~~~~~~~t~~~l~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~ 614 (1276)
+.++|..+. +.-|..+.|...|+.+.+++|++.++++|..... ..|..+-|..+|++|.+++|++.++++
T Consensus 237 g~~~~~~~~-----~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~-----g~t~L~~A~~~~~~~~v~~Ll~~gad~ 306 (351)
T 3utm_A 237 GANVNEKNK-----DFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSL-----GQTALHRAALAGHLQTCRLLLSYGSDP 306 (351)
T ss_dssp TCCTTCCCT-----TCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT-----SCCHHHHHHHHTCHHHHHHHHHTTCCT
T ss_pred CCCcCCcCC-----CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCC-----CCCHHHHHHHcCcHHHHHHHHHcCCCC
Confidence 988885554 4456667777999999999999999888833222 245566666889999999999999998
Q ss_pred cCCCChhhhhhhHHHhhhccCCCCHHHHHHHHHH
Q psy9003 615 GLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDE 648 (1276)
Q Consensus 615 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 648 (1276)
+.+-..- .++++- +..+.+++|.+.
T Consensus 307 ~~~~~~g-----~tal~~----a~~~~~~~l~~~ 331 (351)
T 3utm_A 307 SIISLQG-----FTAAQM----GNEAVQQILSES 331 (351)
T ss_dssp TCCCTTS-----CCHHHH----SCHHHHHHHHHC
T ss_pred CCcCCCC-----CChhhh----hhHHHHHHHHhc
Confidence 7765444 344444 355666666653
|
| >1bf2_A Isoamylase; hydrolase, glycosidase, debranching enzyme; 2.00A {Pseudomonas amyloderamosa} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 | Back alignment and structure |
|---|
Probab=99.45 E-value=9.6e-14 Score=173.22 Aligned_cols=57 Identities=12% Similarity=0.017 Sum_probs=49.1
Q ss_pred hhccceEecCCc--EEEEEEccCCceEEEEeecc-CCCcc------e------EEEEEccCcc------ccc-eEEEEEe
Q psy9003 63 NKYGIHVQADNS--VRCFEWAPSAQQLYLTGNVS-LTPWS------I------MEEASLSSIK------LIQ-SIQYILT 120 (1276)
Q Consensus 63 ~~fGah~~~~gg--~~f~~wAP~A~~v~l~gdfn-~~~w~------m------~~~~~~~~~~------~g~-~yky~i~ 120 (1276)
.-||||... +| |+|++|||+|++|.|++ |+ |+.+. | ||+++||+++ +|+ .|+|+|.
T Consensus 5 ~~lGa~~~~-~g~~~~F~vwap~A~~V~l~l-~~~~~~~~~~~~~~m~~~~~gvW~~~v~~~~~~~~~~~g~y~Y~y~v~ 82 (750)
T 1bf2_A 5 MSLGASYDA-QQANITFRVYSSQATRIVLYL-YSAGYGVQESATYTLSPAGSGVWAVTVPVSSIKAAGITGAVYYGYRAW 82 (750)
T ss_dssp TCCEEEECT-TSSEEEEEEECSSCSEEEEEE-ESSSSSCCCSEEEECEECSTTEEEEEEEHHHHHHTTCCSCCEEEEEEE
T ss_pred cCCCcEEeC-CCCEEEEEEECCCCCEEEEEE-EccCCCCccceEEecccCCCCEEEEEECCcccccccCCCCEEEEEEEE
Confidence 459999754 46 99999999999999999 96 55442 5 9999999999 999 9999998
Q ss_pred c
Q psy9003 121 G 121 (1276)
Q Consensus 121 ~ 121 (1276)
+
T Consensus 83 g 83 (750)
T 1bf2_A 83 G 83 (750)
T ss_dssp B
T ss_pred e
Confidence 6
|
| >3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} | Back alignment and structure |
|---|
Probab=99.44 E-value=4.1e-14 Score=158.35 Aligned_cols=215 Identities=15% Similarity=0.033 Sum_probs=143.8
Q ss_pred cCCChhHHHHHhhhcccccCCCChhhhhcccccchhccccCCHhHHHhhcccccccccCCChhhHHHHHHHHhHhccCCC
Q psy9003 388 LFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGT 467 (1276)
Q Consensus 388 ~~~~id~vkyLi~~~h~~~~~~~~~~~~~~vt~lh~a~~~~~~~~~~yli~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~ 467 (1276)
..|++|+|++|+.. ..++-..+..+. |+||.|+..|+.++|++|+..+..... .
T Consensus 29 ~~g~~~~v~~Ll~~-g~~~~~~d~~g~----t~L~~A~~~g~~~~v~~Ll~~g~~~~~---------------------~ 82 (364)
T 3ljn_A 29 RKGQTDEVRRLIET-GVSPTIQNRFGC----TALHLACKFGCVDTAKYLASVGEVHSL---------------------W 82 (364)
T ss_dssp HHTCHHHHHHHHHT-TCCTTCCCTTCC----CHHHHHHHHCCHHHHHHHHHHCCCCCC---------------------B
T ss_pred HcCCHHHHHHHHHc-CCCccccCCCCC----cHHHHHHHcCCHHHHHHHHHCCCCccc---------------------c
Confidence 34566666666643 234444455555 777777777777777777765541100 0
Q ss_pred hhhHHHhhhhhcccccCCChhhhhhhhhhhhhhccCCCHH----------------HHHHHhhhhcccccCC--CHHHHH
Q psy9003 468 PEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPE----------------QLKYLVDECHKAGLFG--TPEQLK 529 (1276)
Q Consensus 468 ~~~~~~~v~~~~~a~~~~~~e~~~~lv~~~~~~~~~~~~~----------------~~~~~~t~~~~a~~~g--~~e~~~ 529 (1276)
.. .|..|.|...|+.|.+++|++...+.+...+.- .-....|..+.|+..| ++|+++
T Consensus 83 ~g-----~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~ 157 (364)
T 3ljn_A 83 HG-----QKPIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIK 157 (364)
T ss_dssp TT-----BCHHHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHH
T ss_pred CC-----CCHHHHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHH
Confidence 01 345555555666666666666543332111100 0001268899999999 999999
Q ss_pred HHHhhhhhcCCCCCcchhhhhhhhhhccccCCCHHHHHHHHHhhhh-----ccCCCChhhhhhhhhhhcccccCCCHHHH
Q psy9003 530 YLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHK-----AGLFGTPEQLKYLVDECHKAGLFGTPEQL 604 (1276)
Q Consensus 530 ~lv~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~e~~~~l~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 604 (1276)
+|++.+++++..+. ...|..+.|...|+.|.+++|++.+++ +|..... ..|..+.|...|++|.+
T Consensus 158 ~Ll~~ga~~~~~d~-----~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~-----g~t~L~~A~~~g~~~~v 227 (364)
T 3ljn_A 158 ILVQLGASPTAKDK-----ADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQ-----GNSHLHWAILINWEDVA 227 (364)
T ss_dssp HHHHHTCCTTCCCT-----TSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTT-----CCCTTHHHHTTTCHHHH
T ss_pred HHHHcCCCCcccCC-----CCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCC-----CCcHHHHHHHcCCHHHH
Confidence 99999988886554 445666777799999999999999998 6632222 24666677799999999
Q ss_pred HHHHhhhhhccCCCChhhhhhhHHHhhhccCCCCHHHHHHHHHH
Q psy9003 605 KYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDE 648 (1276)
Q Consensus 605 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 648 (1276)
++|++.++++|.+-..- .++++.|..+|..+.+++|++.
T Consensus 228 ~~Ll~~gad~~~~d~~g-----~tpL~~A~~~g~~~~v~~Ll~~ 266 (364)
T 3ljn_A 228 MRFVEMGIDVNMEDNEH-----TVPLYLSVRAAMVLLTKELLQK 266 (364)
T ss_dssp HHHHTTTCCTTCCCTTS-----CCHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHcCCCCCCCCCCC-----CCHHHHHHHhChHHHHHHHHHc
Confidence 99999999987664443 5677777778999999999885
|
| >3ttq_A Dextransucrase; (beta/alpha)8 barrel, transferase; HET: PG4; 1.90A {Leuconostoc mesenteroides} PDB: 3tto_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=7.9e-14 Score=175.29 Aligned_cols=110 Identities=14% Similarity=0.205 Sum_probs=80.6
Q ss_pred CceEEEEecCCccc--cCccCcHHHHHHhhhhHHHHcCCCCCccceeecccccccccccccceeeccCcccccccccccc
Q psy9003 895 NLKIYESHVGICTQ--EQKCASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAE 972 (1276)
Q Consensus 895 d~vIYElHVr~ft~--~~~~Gtf~gl~ek~LdyLK~LGVna~d~wV~LmP~f~~eew~~~~pi~~l~~~Pi~E~~i~~~~ 972 (1276)
..+|||.+-..... ....+||.+++++ |||||+||||+ |||||+|++.. ..+..
T Consensus 830 s~Vi~QgF~W~~~~~g~~w~~Ty~~I~~k-LdYLk~LGITa----IwL~Pi~~s~~-----------~~~~~-------- 885 (1108)
T 3ttq_A 830 SNLIYEGFSNFQPKATTHDELTNVVIAKN-ADVFNNWGITS----FEMAPQYRSSG-----------DHTFL-------- 885 (1108)
T ss_dssp TCCEEECCCTTCCCCSSGGGSHHHHHHHT-HHHHHHHTCCE----EECCCCSCBCC-----------CCSSG--------
T ss_pred CceEEEeEECCCCCCCCccchhHHHHHHH-HHHHHHcCCCE----EEECCCccCCC-----------ccccc--------
Confidence 47999955332111 2234688899996 99999999999 99997775310 00000
Q ss_pred CCCcccCCCccccccccccccccccCCCCCCcccccccccccCCCCCccccccccccCCCCCCHHHHHHHHHHHHHcCCE
Q psy9003 973 SHDQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLY 1052 (1276)
Q Consensus 973 S~~~~~WGYdp~nyf~~d~~~y~~~S~~~Dp~~~~dap~~~yas~s~hkYt~D~~~ID~~~Gt~eEfK~LV~alHk~GI~ 1052 (1276)
.....+||++.||| .+. +.++|+||+++|||+||++||++||+
T Consensus 886 -~~~~d~GYdi~D~y---------------------~lG---------------f~i~~~yGt~edfk~LV~alH~~GI~ 928 (1108)
T 3ttq_A 886 -DSTIDNGYAFTDRY---------------------DLG---------------FNTPTKYGTDGDLRATIQALHHANMQ 928 (1108)
T ss_dssp -GGTTTCSSSBSCTT---------------------CSS---------------SSSCCSSCCHHHHHHHHHHHHHTTCE
T ss_pred -cccccCCccccccc---------------------ccC---------------cCCCCCCCCHHHHHHHHHHHHHCCCE
Confidence 01246899999999 111 12459999999999999999999999
Q ss_pred EEEEEeccccCCc
Q psy9003 1053 VLLDVVHSHASKN 1065 (1276)
Q Consensus 1053 VILDvV~NHt~~~ 1065 (1276)
||||||+||++..
T Consensus 929 VIlDvV~NHta~~ 941 (1108)
T 3ttq_A 929 VMADVVDNQVYNL 941 (1108)
T ss_dssp EEEEECCSEECCC
T ss_pred EEEEeccccccCC
Confidence 9999999999744
|
| >1j0h_A Neopullulanase; beta-alpha-barrels, hydrolase; 1.90A {Geobacillus stearothermophilus} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 1j0i_A* 1j0j_A* 1j0k_A* 1sma_A 1gvi_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=1.7e-13 Score=166.33 Aligned_cols=117 Identities=18% Similarity=0.290 Sum_probs=92.7
Q ss_pred hhccceEecCC-cEEEEEEccCCceEEE-Eeecc-CCC--cc-----e----------EEEEEccCccccceEEEEEecC
Q psy9003 63 NKYGIHVQADN-SVRCFEWAPSAQQLYL-TGNVS-LTP--WS-----I----------MEEASLSSIKLIQSIQYILTGV 122 (1276)
Q Consensus 63 ~~fGah~~~~g-g~~f~~wAP~A~~v~l-~gdfn-~~~--w~-----m----------~~~~~~~~~~~g~~yky~i~~~ 122 (1276)
.-||+....+. .+||++|||+|++|+| +|||| |++ |. | +|+++||+...|..|||+|.+.
T Consensus 12 ~~~~~~~~~~~~~i~~~~~~~~a~~V~l~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~w~~~v~~~~~~~~Y~f~i~~~ 91 (588)
T 1j0h_A 12 DNFAYAYDSETLHLRLRTKKDDIDRVELLHGDPYDWQNGAWQFQMMPMRKTGSDELFDYWFAEVKPPYRRLRYGFVLYSG 91 (588)
T ss_dssp TTTEEESSSSCEEEEEEEETTTCSEEEEEEECTTCEETTEECCEEEECEEEEECSSEEEEEEEECCTTSCEEEEEEEEET
T ss_pred CCceEecCCCEEEEEEEECCCCccEEEEEECCCCCccccccceEEEEeEEeecCCCeEEEEEEEECCCcEEEEEEEEEeC
Confidence 34555443333 8999999999999999 79997 754 53 5 5999999999999999999876
Q ss_pred CC-------------CCCccccccc----------------------cccccc-------------------------CC
Q psy9003 123 FG-------------TPEQLKYLVD----------------------ECHKAG-------------------------LF 142 (1276)
Q Consensus 123 ~g-------------rp~~as~~~d----------------------e~h~gs-------------------------~~ 142 (1276)
+| +|.++|.+++ |+|.-+ |+
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~viYqi~~~~F~~~~~~~~~~~~~~w~~~~~~~~~~~ 171 (588)
T 1j0h_A 92 EEKLVYTEKGFYFEVPTDDTAYYFCFPFLHRVDLFEAPDWVKDTVWYQIFPERFANGNPSISPEGSRPWGSEDPTPTSFF 171 (588)
T ss_dssp TEEEEEETTEEESSCCCSCSTTSEEECCCCGGGSCCCCGGGGGCCEEEECGGGTCCSCGGGSCTTCCCTTSSCCCSSCCC
T ss_pred CEEEEEECCCccccCCcccCCCceEeeeecccccCCCCccccccEEEEEcchhhcCCCCCcCcccccccCCCCCcccccC
Confidence 54 3444444332 565333 24
Q ss_pred --ChHHHHHHHHHHHHhcCc----------------------------CCCHHHHHHHHHHHHHcCCC
Q psy9003 143 --GTPEQLKYLVDECHKAGL----------------------------FGTPEQLKYLVDECHKAGLF 180 (1276)
Q Consensus 143 --~y~e~a~~li~y~~~~~y----------------------------ygtp~~l~~~vd~~h~~~i~ 180 (1276)
+|+.|++.| ||||++|+ |||++||+.||++||++||+
T Consensus 172 ~G~~~gi~~~L-dyLk~LGvt~I~L~Pi~~~~~~~GYd~~dy~~idp~~Gt~~df~~lv~~~H~~Gi~ 238 (588)
T 1j0h_A 172 GGDLQGIIDHL-DYLVDLGITGIYLTPIFRSPSNHKYDTADYFEVDPHFGDKETLKTLIDRCHEKGIR 238 (588)
T ss_dssp CCCHHHHHHTH-HHHHHHTCCEEEECCCEECSSSSCCSCSEEEEECTTTCCHHHHHHHHHHHHHTTCE
T ss_pred CCCHHHHHHHH-HHHHHcCCCEEEECCcccCCCCCCcCccccCccCccCCCHHHHHHHHHHHHHCCCE
Confidence 899999997 99999998 99999999999999999998
|
| >2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 | Back alignment and structure |
|---|
Probab=99.42 E-value=5.9e-14 Score=159.36 Aligned_cols=281 Identities=13% Similarity=0.021 Sum_probs=173.4
Q ss_pred CCChHHHHHHHhhhhccCCCCCccccchhhhhhcccccCCCHHHHHHHhhhhhccCCCCcccchhhhhccccccccCCCh
Q psy9003 275 FGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTP 354 (1276)
Q Consensus 275 ~~~ie~~~yli~e~~~~~~~~~~~~~t~~~~~~~~a~~~gsi~~l~~Lv~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~i 354 (1276)
.++.++++.++..- .+..|.|-+ |.|+. |..+++++|... .++ ..+. +...|..|.|+..|++
T Consensus 76 ~g~~~~~~~~~~~~------~~~~g~t~L----~~Aa~-~~~~~~~~L~~~--~~n--~~d~--~~g~t~Lh~Aa~~g~~ 138 (373)
T 2fo1_E 76 LGDFNHTNLQIPTE------PEPESPIKL----HTEAA-GSYAITEPITRE--SVN--IIDP--RHNRTVLHWIASNSSA 138 (373)
T ss_dssp ------------------------CCCHH----HHHHH-SSSCCCSCCSTT--TTT--TCCC--SSCCCHHHHHHCTTCC
T ss_pred cccccccccccccC------CCCCCccHH----HHHhc-CCchHHHHhccc--ccc--ccCC--cCCCCHHHHHHHCCCH
Confidence 36667777666532 233444444 55555 445788888642 223 2220 1234677889999999
Q ss_pred hhhHHhhhh------hccccC---CCChhhHHHHHhhhcccccCCChhHHHHHhhhcccccCCCChhhhhcccccchhcc
Q psy9003 355 EQLKYLVDE------CHKAGL---FGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAG 425 (1276)
Q Consensus 355 e~~~yLi~~------~h~~~~---~~~~e~~~~~~~~~~~a~~~~~id~vkyLi~~~h~~~~~~~~~~~~~~vt~lh~a~ 425 (1276)
|+|++|+.. -+-..+ +....+.. +.|+..|+.|+|++|+.. .+++-..+..+. |+||.|+
T Consensus 139 ~~v~~Ll~~~~~~ll~~ga~vn~~d~~g~TpL------~~A~~~g~~~iv~~Ll~~-ga~~~~~~~~g~----t~L~~A~ 207 (373)
T 2fo1_E 139 EKSEDLIVHEAKECIAAGADVNAMDCDENTPL------MLAVLARRRRLVAYLMKA-GADPTIYNKSER----SALHQAA 207 (373)
T ss_dssp SCCTTHHHHHHHHHHHTCCCTTCCCTTSCCHH------HHHHHHTCHHHHHHHHHT-TCCSCCCCTTCC----CHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCcCCCCCCCCHH------HHHHHcChHHHHHHHHHC-CCCCcccCCCCC----CHHHHHH
Confidence 999999742 111222 22222222 333446899999999975 445556677777 9999999
Q ss_pred ccCCHhHHHhhcccccccccCCChhhHHHHHHHHhHhccCCChhhHHHhhhhhcccccCC---Chhhhhhhhhhhhhhcc
Q psy9003 426 LFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFG---TPEQLKYLVDECHKAGL 502 (1276)
Q Consensus 426 ~~~~~~~~~yli~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~~~~~~~v~~~~~a~~~~---~~e~~~~lv~~~~~~~~ 502 (1276)
..|+.++|++|+..+.. ...++..+... .|..|.|...+ .++.+++|++...+++.
T Consensus 208 ~~g~~~~v~~Ll~~~~~----------------~~~~~~~d~~g-----~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~ 266 (373)
T 2fo1_E 208 ANRDFGMMVYMLNSTKL----------------KGDIEELDRNG-----MTALMIVAHNEGRDQVASAKLLVEKGAKVDY 266 (373)
T ss_dssp HTTCHHHHHHHTTSHHH----------------HHTTSCCCTTS-----CCHHHHHHHSCSTTHHHHHHHHHHHTCCSSC
T ss_pred HCCCHHHHHHHHhcCcc----------------ccChhhcCCCC-----CCHHHHHHHhCCcchHHHHHHHHHCCCCccc
Confidence 99999999999986520 01111111112 45666666666 78888888888877775
Q ss_pred CCCHHH---HHHHhhhhcccccCCCHHHHHHHHhhh-hhcCCCCCcchhhhhhhhhhccccCCCHHHHHHHHHhhhhccC
Q psy9003 503 FGTPEQ---LKYLVDECHKAGLFGTPEQLKYLVDEC-HKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGL 578 (1276)
Q Consensus 503 ~~~~~~---~~~~~t~~~~a~~~g~~e~~~~lv~~~-~~~~~~~t~~~l~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~ 578 (1276)
...... =....|..+.|+..|+++++++|++.+ .++|..+. ..-|..+.|...|++|.+++|++.++++|.
T Consensus 267 ~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~-----~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~ 341 (373)
T 2fo1_E 267 DGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDE-----DGKTPIMLAAQEGRIEVVMYLIQQGASVEA 341 (373)
T ss_dssp CSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCT-----TCCCHHHHHHHHTCHHHHHHHHHTTCCSSC
T ss_pred ccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCccCcCC-----CCCCHHHHHHHcCCHHHHHHHHHcCCCccC
Confidence 321000 002368899999999999999999886 77775554 445666677789999999999999988884
Q ss_pred CCChhhhhhhhhhhcccccCCCHHHHHHHHhhhhhc
Q psy9003 579 FGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKA 614 (1276)
Q Consensus 579 ~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~ 614 (1276)
....- .|+.+-|...|+.|.+++|...++|+
T Consensus 342 ~d~~g-----~t~l~~A~~~g~~~iv~~Ll~~~a~~ 372 (373)
T 2fo1_E 342 VDATD-----HTARQLAQANNHHNIVDIFDRCRPER 372 (373)
T ss_dssp CCSSS-----CCHHHHHHHTTCHHHHHHHHTTC---
T ss_pred CCCCC-----CCHHHHHHHcCCHHHHHHHHhcCccc
Confidence 33222 45666666889999999999887765
|
| >3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} | Back alignment and structure |
|---|
Probab=99.41 E-value=2.7e-13 Score=148.38 Aligned_cols=235 Identities=12% Similarity=-0.016 Sum_probs=160.2
Q ss_pred CChhHHHHHhhhcccccCCCChhhhhcccccchhccccCCHhHHHhhcccccccccCCChhhHHHHHHHHhHhccCCChh
Q psy9003 390 GTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPE 469 (1276)
Q Consensus 390 ~~id~vkyLi~~~h~~~~~~~~~~~~~~vt~lh~a~~~~~~~~~~yli~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~~ 469 (1276)
++.+++++|+.. ++-..+.++. ||||.|+..|+.++|++|+..+-- ++ ..+.
T Consensus 11 ~~~~v~~lL~~~---~~~~~d~~g~----t~L~~A~~~g~~~~v~~Ll~~g~~-------------------~~--~~~g 62 (285)
T 3kea_A 11 KSKQLKSFLSSK---DTFKADVHGH----SASYYAIADNNVRLVCTLLNAGAL-------------------KN--LLEN 62 (285)
T ss_dssp CHHHHHHHHHST---TTTCCCTTSC----CHHHHHHHTTCHHHHHHHHHTTGG-------------------GS--CCTT
T ss_pred CHHHHHHHHHhC---CCCccCCCCC----CHHHHHHHcCCHHHHHHHHhCCCC-------------------CC--CCCC
Confidence 456677777653 4455566777 999999988999998888875321 11 1111
Q ss_pred hHHHhhhhhcccccCCChhhhhhhhhhhhhhccCCCHHHHHHHhhhhcccccCCCHHHHHHHHhhhhhcCCCCCcchhhh
Q psy9003 470 QLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKY 549 (1276)
Q Consensus 470 ~~~~~v~~~~~a~~~~~~e~~~~lv~~~~~~~~~~~~~~~~~~~t~~~~a~~~g~~e~~~~lv~~~~~~~~~~t~~~l~~ 549 (1276)
.|..|.|..+|+.|.+++|++.+.++|.... ...|+.+.|+..|+++++++|++.+++++..+. +
T Consensus 63 -----~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~-----~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~-----~ 127 (285)
T 3kea_A 63 -----EFPLHQAATLEDTKIVKILLFSGLDDSQFDD-----KGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGK-----T 127 (285)
T ss_dssp -----CCHHHHHTTSSSCHHHHHHHHTTCCTTCCCT-----TSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCSS-----S
T ss_pred -----CCHHHHHHHcCCHHHHHHHHHCCCCCCCcCC-----CCCcHHHHHHHcCCHHHHHHHHhcCCCCCccCC-----C
Confidence 4677888888888888888888777776544 446788888888888999998888888775444 3
Q ss_pred h-hhhhhccccCCCHHHHHHHHHhhhhccCCCChhhhhhhhhhhcccccCCCHHHHHHHHhhhhhccCCCChhhhhhhHH
Q psy9003 550 L-VDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVD 628 (1276)
Q Consensus 550 ~-~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~ 628 (1276)
. .|..+.|...|++|.+++|++.+++..... ...|..+.|...|++|.+++|++.++++|.+-... .+
T Consensus 128 g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~------~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g-----~t 196 (285)
T 3kea_A 128 GWKTSFYHAVMLNDVSIVSYFLSEIPSTFDLA------ILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLL-----FI 196 (285)
T ss_dssp GGGSHHHHHHHTTCHHHHHHHHTTSCTTCCCS------THHHHHHHHHHTTCHHHHHHHHHHHHHTCTTCCCB-----CC
T ss_pred CCCCHHHHHHHcCCHHHHHHHHhCCCcccccc------CCccHHHHHHHcChHHHHHHHHHcCCCCCcccCCC-----CC
Confidence 3 455666778888888888888877664221 22455666668888888888888888887654433 22
Q ss_pred H-hhhccCCCCHHHHHHHHHHHHhhcCCCChHHHhhhhhhhhhcccCCChhHHHHHHHHHHhh
Q psy9003 629 E-CHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKA 690 (1276)
Q Consensus 629 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 690 (1276)
. ++-|..+|.+|.+++|++.-.. .-.++ +.|...|++|++|+|++.=.+.
T Consensus 197 ~~L~~A~~~~~~~~v~~Ll~~gad-------~~~~~-----~~a~~~~~~~iv~~Ll~~g~~~ 247 (285)
T 3kea_A 197 PDIKLAIDNKDIEMLQALFKYDIN-------IYSAN-----LENVLLDDAEIAKMIIEKHVEY 247 (285)
T ss_dssp TTHHHHHHHTCHHHHHHHTTSCBC-------STTTT-----GGGGTTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHcCCHHHHHHHHHcCCC-------CCCCC-----hhhhhcCCHHHHHHHHHcCCCC
Confidence 2 4555556888888888753111 11111 3566778888888888754443
|
| >2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A | Back alignment and structure |
|---|
Probab=99.41 E-value=6.9e-14 Score=144.82 Aligned_cols=214 Identities=11% Similarity=-0.007 Sum_probs=137.9
Q ss_pred CChhhhHHhhhhhccccC--CCChhhHHHHHhhhcccccCCChhHHHHHhhhcccccCCCChhhhhcccccchhccccCC
Q psy9003 352 GTPEQLKYLVDECHKAGL--FGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGT 429 (1276)
Q Consensus 352 g~ie~~~yLi~~~h~~~~--~~~~e~~~~~~~~~~~a~~~~~id~vkyLi~~~h~~~~~~~~~~~~~~vt~lh~a~~~~~ 429 (1276)
|++|++++|++..-.++. +....... +.|+..|++|+|++|+.. ..++-..+.++. ||||.|+..|+
T Consensus 2 g~~~~i~~Ll~~g~~~~~~~d~~g~t~L------~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~----t~L~~A~~~~~ 70 (223)
T 2f8y_A 2 DAPAVISDFIYQGASLHNQTDRTGETAL------HLAARYSRSDAAKRLLEA-SADANIQDNMGR----TPLHAAVSADA 70 (223)
T ss_dssp ---CCEETTEETTCCTTCCCTTTCCCHH------HHHHHTTCHHHHHHHHHT-TCCTTCCCTTSC----CHHHHHHHTTC
T ss_pred CcHHHHHHHHHcCCCcccccCCCCCchH------HHHHHcCCHHHHHHHHHc-CCCCCCcCCCCC----CHHHHHHHcCC
Confidence 567777777765443321 12222222 223335788888888865 344555566666 88888888888
Q ss_pred HhHHHhhcccccccccCCChhhHHHHHHHHhHhccCCChhhHHHhhhhhcccccCCChhhhhhhhhhhhhhccCCCHHHH
Q psy9003 430 PEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQL 509 (1276)
Q Consensus 430 ~~~~~yli~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~~~~~~~v~~~~~a~~~~~~e~~~~lv~~~~~~~~~~~~~~~ 509 (1276)
.+++++|+..+.......+.+. .|..|.|...|..|.+++|++...+++....
T Consensus 71 ~~~v~~Ll~~~~~~~~~~~~~g-----------------------~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~---- 123 (223)
T 2f8y_A 71 QGVFQILIRNRATDLDARMHDG-----------------------TTPLILAARLAVEGMLEDLINSHADVNAVDD---- 123 (223)
T ss_dssp HHHHHHHHHBTTSCTTCCCTTC-----------------------CCHHHHHHHHTCHHHHHHHHHTTCCTTCBCT----
T ss_pred HHHHHHHHHcCCCCcccCCCCC-----------------------CcHHHHHHHhCcHHHHHHHHHcCCCCcCcCC----
Confidence 8888888876543333222221 3556666667777777777777666665443
Q ss_pred HHHhhhhcccccCCCHHHHHHHHhhhhhcCCCCCcchhhhhhhhhhccccCCCHHHHHHHHHhhhhccCCCChhhhhhhh
Q psy9003 510 KYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLV 589 (1276)
Q Consensus 510 ~~~~t~~~~a~~~g~~e~~~~lv~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~~~ 589 (1276)
...|+.+.|+..|+++++++|++.+.+++..+. ..-|..+.|...|+.|.+++|++.+++++...... .
T Consensus 124 -~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~-----~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g-----~ 192 (223)
T 2f8y_A 124 -LGKSALHWAAAVNNVDAAVVLLKNGANKDMQNN-----REETPLFLAAREGSYETAKVLLDHFANRDITDHMD-----R 192 (223)
T ss_dssp -TSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCT-----TCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTC-----C
T ss_pred -CCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCC-----CCcCHHHHHHHcCCHHHHHHHHHcCCCCccccccC-----C
Confidence 346778888888888888888888877775544 34455666668888888888888888777332222 3
Q ss_pred hhhcccccCCCHHHHHHHHhhhhhc
Q psy9003 590 DECHKAGLFGTPEQLKYLVDECHKA 614 (1276)
Q Consensus 590 ~~~~~~~~~~~~e~~~~l~~~~~~~ 614 (1276)
|..+-|...|+.|.+++|.+.++..
T Consensus 193 t~l~~A~~~~~~~i~~~L~~~g~~~ 217 (223)
T 2f8y_A 193 LPRDIAQERMHHDIVRLLDEYNLVR 217 (223)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTTCSS
T ss_pred CHHHHHHHhcchHHHHHHHHcCCCc
Confidence 4555566788888888888776654
|
| >2wan_A Pullulanase; hydrolase, glycoside hydrolase, polysaccharide, amylase, starch, carbohydrate; 1.65A {Bacillus acidopullulyticus} | Back alignment and structure |
|---|
Probab=99.40 E-value=1.4e-13 Score=175.03 Aligned_cols=123 Identities=17% Similarity=0.131 Sum_probs=93.1
Q ss_pred HHhhH-HHhh----ccceEecCCcEEEEEEccCCceEEEEeecc-CCCc--c---e------EEEEEccCccccceEEEE
Q psy9003 56 EKFTT-SYNK----YGIHVQADNSVRCFEWAPSAQQLYLTGNVS-LTPW--S---I------MEEASLSSIKLIQSIQYI 118 (1276)
Q Consensus 56 ~~Fs~-~y~~----fGah~~~~gg~~f~~wAP~A~~v~l~gdfn-~~~w--~---m------~~~~~~~~~~~g~~yky~ 118 (1276)
+.|.+ .|.+ ||||... +|++|++|||+|++|.|++ || |+.. . | +|+++||++.+|+.|+|+
T Consensus 304 ~~~d~~~~~y~g~~lGa~~~~-~gv~F~vwaP~A~~V~l~l-f~~~~~~~~~~~~m~~~~~gvW~~~v~~~~~g~~Y~y~ 381 (921)
T 2wan_A 304 NVLNLPRYDYSGNDLGNVYSK-DATSFRVWAPTASNVQLLL-YNSEKGSITKQLEMQKSDNGTWKLQVSGNLENWYYLYQ 381 (921)
T ss_dssp GGGGSGGGCCCCSCCEEEECS-SEEEEEEECTTCSEEEEEE-ESSSSSCCSEEEECEECGGGEEEEEEESCCTTCEEEEE
T ss_pred hhcccccccccCCCceeEEEC-CeEEEEEECCCCCEEEEEE-EeCCCCCcCeEEeCeeCCCCEEEEEEccCCCCCEEEEE
Confidence 56776 4433 7888754 4699999999999999997 95 4311 2 6 999999999999999999
Q ss_pred EecCCC-------------CCCccccccc--------------------------ccccccCC-----------ChHHHH
Q psy9003 119 LTGVFG-------------TPEQLKYLVD--------------------------ECHKAGLF-----------GTPEQL 148 (1276)
Q Consensus 119 i~~~~g-------------rp~~as~~~d--------------------------e~h~gs~~-----------~y~e~a 148 (1276)
|.+.+. .++..|+|+| |||.+||. +|..++
T Consensus 382 v~~~g~~~~~~DPya~~~~~~~~~s~v~d~~~~~~~~W~~~~~p~~~~~~~~vIYEihv~~F~~~~~~g~~~~Gt~~g~~ 461 (921)
T 2wan_A 382 VTVNGTTQTAVDPYARAISVNATRGMIVDLKATDPAGWQGDHEQTPANPVDEVIYEAHVRDFSIDANSGMKNKGKYLAFT 461 (921)
T ss_dssp EECSSCEEEECCTTCSSBSGGGSSEECCCGGGGSCTTGGGCCCCCCSSGGGCCEEEECHHHHHCSTTSCCSSTTSGGGGG
T ss_pred EEeCCeEEEecCCcceeeccCCCceEEEcccccCccccccccCCCCCCchhcEEEEEEcCcccCCCCCCCCCCCCeehee
Confidence 986432 1233444432 99999864 577777
Q ss_pred HH----------HHHHHHhcCc-------------------------------------CCC-------HHHHHHHHHHH
Q psy9003 149 KY----------LVDECHKAGL-------------------------------------FGT-------PEQLKYLVDEC 174 (1276)
Q Consensus 149 ~~----------li~y~~~~~y-------------------------------------ygt-------p~~l~~~vd~~ 174 (1276)
+. .+||||++|+ ||+ ++||+.||++|
T Consensus 462 e~~~~~l~Gi~~~LdyLk~LGvtaI~L~Pi~e~~~~de~~~~~~~wGYd~~dy~ap~~~y~~dp~Gt~~~~dfk~LV~~a 541 (921)
T 2wan_A 462 EHGTKGPDHVKTGIDSLKELGITTVQLQPVEEFNSIDETQPDTYNWGYDPRNYNVPEGAYATTPEGTARITELKQLIQSL 541 (921)
T ss_dssp CCSCBCGGGCBCHHHHHHHHTCCEEEESCCEEESSSCTTSTTSCCCCCSEEEEEEECGGGSSCSSTTHHHHHHHHHHHHH
T ss_pred ccccccccccchhhHHHHHcCCCEEEeCCccccCcccccccCcCCcCCCCcCCCCCCcccccCCCCCccHHHHHHHHHHH
Confidence 64 7999999987 244 68888888888
Q ss_pred HHcCCC
Q psy9003 175 HKAGLF 180 (1276)
Q Consensus 175 h~~~i~ 180 (1276)
|++||+
T Consensus 542 H~~GI~ 547 (921)
T 2wan_A 542 HQQRIG 547 (921)
T ss_dssp HHTTCE
T ss_pred HHcCCE
Confidence 888887
|
| >2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A | Back alignment and structure |
|---|
Probab=99.39 E-value=7.9e-14 Score=144.40 Aligned_cols=210 Identities=11% Similarity=0.006 Sum_probs=154.5
Q ss_pred CChhHHHHHhhhcccccCCCChhhhhcccccchhccccCCHhHHHhhcccccccccCCChhhHHHHHHHHhHhccCCChh
Q psy9003 390 GTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPE 469 (1276)
Q Consensus 390 ~~id~vkyLi~~~h~~~~~~~~~~~~~~vt~lh~a~~~~~~~~~~yli~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~~ 469 (1276)
|++|+|++|+...-..+..++.++. |+||.|+..|+.++|++|+..+.. +...+ ...
T Consensus 2 g~~~~i~~Ll~~g~~~~~~~d~~g~----t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~------------------~~g 58 (223)
T 2f8y_A 2 DAPAVISDFIYQGASLHNQTDRTGE----TALHLAARYSRSDAAKRLLEASAD-ANIQD------------------NMG 58 (223)
T ss_dssp ---CCEETTEETTCCTTCCCTTTCC----CHHHHHHHTTCHHHHHHHHHTTCC-TTCCC------------------TTS
T ss_pred CcHHHHHHHHHcCCCcccccCCCCC----chHHHHHHcCCHHHHHHHHHcCCC-CCCcC------------------CCC
Confidence 7899999999875544445577888 999999999999999999976422 11111 111
Q ss_pred hHHHhhhhhcccccCCChhhhhhhhhhhh-hhccCCCHHHHHHHhhhhcccccCCCHHHHHHHHhhhhhcCCCCCcchhh
Q psy9003 470 QLKYLVDECHKAGLFGTPEQLKYLVDECH-KAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLK 548 (1276)
Q Consensus 470 ~~~~~v~~~~~a~~~~~~e~~~~lv~~~~-~~~~~~~~~~~~~~~t~~~~a~~~g~~e~~~~lv~~~~~~~~~~t~~~l~ 548 (1276)
.|..|.|...|+.|.+++|++... .++.... ...|+.+.|+..|+++++++|++.+.+++..+.
T Consensus 59 -----~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~-----~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~----- 123 (223)
T 2f8y_A 59 -----RTPLHAAVSADAQGVFQILIRNRATDLDARMH-----DGTTPLILAARLAVEGMLEDLINSHADVNAVDD----- 123 (223)
T ss_dssp -----CCHHHHHHHTTCHHHHHHHHHBTTSCTTCCCT-----TCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCT-----
T ss_pred -----CCHHHHHHHcCCHHHHHHHHHcCCCCcccCCC-----CCCcHHHHHHHhCcHHHHHHHHHcCCCCcCcCC-----
Confidence 467788888888888888888665 4444332 236788889999999999999998888775554
Q ss_pred hhhhhhhccccCCCHHHHHHHHHhhhhccCCCChhhhhhhhhhhcccccCCCHHHHHHHHhhhhhccCCCChhhhhhhHH
Q psy9003 549 YLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVD 628 (1276)
Q Consensus 549 ~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~ 628 (1276)
+.-|..+.|...|+++.+++|++.++++|...... .|..+-|...|++|.+++|++.+++++.+-... .+
T Consensus 124 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g-----~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g-----~t 193 (223)
T 2f8y_A 124 LGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNRE-----ETPLFLAAREGSYETAKVLLDHFANRDITDHMD-----RL 193 (223)
T ss_dssp TSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTC-----CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTC-----CC
T ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCC-----cCHHHHHHHcCCHHHHHHHHHcCCCCccccccC-----CC
Confidence 34556667778999999999999999888433222 455666668999999999999999887664433 45
Q ss_pred HhhhccCCCCHHHHHHHHH
Q psy9003 629 ECHKAGLFGTPEQLKYLVD 647 (1276)
Q Consensus 629 ~~~~~~~~~~~~~~~~~~~ 647 (1276)
+++-|...|+.|.+++|++
T Consensus 194 ~l~~A~~~~~~~i~~~L~~ 212 (223)
T 2f8y_A 194 PRDIAQERMHHDIVRLLDE 212 (223)
T ss_dssp HHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHhcchHHHHHHHH
Confidence 5666666788888888876
|
| >2e8y_A AMYX protein, pullulanase; multiple domain, beta-alpha-barrel, alpha-amylase-family, HY; 2.11A {Bacillus subtilis} PDB: 2e8z_A* 2e9b_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=3.2e-13 Score=167.70 Aligned_cols=115 Identities=13% Similarity=0.127 Sum_probs=90.9
Q ss_pred hccceEecCCcEEEEEEccCCceEEEEeecc-CCCcc---e------EEEEEccCccccceEEEEEecCCC---------
Q psy9003 64 KYGIHVQADNSVRCFEWAPSAQQLYLTGNVS-LTPWS---I------MEEASLSSIKLIQSIQYILTGVFG--------- 124 (1276)
Q Consensus 64 ~fGah~~~~gg~~f~~wAP~A~~v~l~gdfn-~~~w~---m------~~~~~~~~~~~g~~yky~i~~~~g--------- 124 (1276)
.||||...+ |++|++|||+|++|.|+|+|| | +|. | +|+++||++.+|..|+|+|.+.+.
T Consensus 105 ~lGa~~~~~-~~~f~vwap~a~~V~l~~~~~~~-~~~~~~m~~~~~g~w~~~v~~~~~g~~Y~f~v~~~g~~~~~~DPya 182 (718)
T 2e8y_A 105 ELGAVYTAD-HTVFKVWAPAATSAAVKLSHPNK-SGRTFQMTRLEKGVYAVTVTGDLHGYEYLFCICNNSEWMETVDQYA 182 (718)
T ss_dssp CCEEEECSS-EEEEEEECTTCSEEEEEEECTTS-CCEEEECEECGGGEEEEEEESCCTTCEEEEEEEETTEEEEECCTTC
T ss_pred CCCCEEeCC-cEEEEEECCCCCEEEEEEEcCCC-cceEEeCccCCCCEEEEEECCCCCCCeEEEEEEeCCeEEEecCCcc
Confidence 499997544 699999999999999999995 3 223 6 999999999999999999985321
Q ss_pred ----CCCccccccc----------------------ccccccCC-----------ChHHHHH----------HHHHHHHh
Q psy9003 125 ----TPEQLKYLVD----------------------ECHKAGLF-----------GTPEQLK----------YLVDECHK 157 (1276)
Q Consensus 125 ----rp~~as~~~d----------------------e~h~gs~~-----------~y~e~a~----------~li~y~~~ 157 (1276)
.++..|+|+| |||.++|. +|..+++ ..+||+|+
T Consensus 183 ~~~~~~~~~s~v~d~~~~~~~~w~~~~~~~~~~viYei~v~~F~~~~~~g~~~~G~~~g~~e~~~~~l~Gi~~~LdyLk~ 262 (718)
T 2e8y_A 183 KAVTVNGEKGVVLRPDQMKWTAPLKPFSHPVDAVIYETHLRDFSIHENSGMINKGKYLALTETDTQTANGSSSGLAYVKE 262 (718)
T ss_dssp SSBCGGGCSEECCCCCCCCCCCCCCCCSCGGGCCEEEECHHHHHHSTTSCCSSTTSGGGGGCTTCBCTTSCBCHHHHHHH
T ss_pred cccccCCCcceEEcccccCCcccCCCCCChhhcEEEEEehHHhcCCCCCCCCCCCCeeccccccccccccchhhhHHHHH
Confidence 2344555543 89998863 5777765 37899999
Q ss_pred cCc--------------------------------------CCC--------HHHHHHHHHHHHHcCCC
Q psy9003 158 AGL--------------------------------------FGT--------PEQLKYLVDECHKAGLF 180 (1276)
Q Consensus 158 ~~y--------------------------------------ygt--------p~~l~~~vd~~h~~~i~ 180 (1276)
+|+ ||+ ++||+.||++||++||+
T Consensus 263 LGvtaI~L~Pi~~~~~~de~~~~~~~~wGYd~~dy~a~~~~yg~~p~~g~~~~~dfk~LV~~aH~~GI~ 331 (718)
T 2e8y_A 263 LGVTHVELLPVNDFAGVDEEKPLDAYNWGYNPLHFFAPEGSYASNPHDPQTRKTELKQMINTLHQHGLR 331 (718)
T ss_dssp HTCSEEEESCCEEESSSCTTSGGGCCCCCCSEEEEEEECSTTSSCSSSHHHHHHHHHHHHHHHHHTTCE
T ss_pred cCCCEEEECCccccCccccccccccCcCCCCccCCCCcCcccccCCCCccccHHHHHHHHHHHHHCCCE
Confidence 876 454 58999999999999998
|
| >2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 | Back alignment and structure |
|---|
Probab=99.38 E-value=5.4e-14 Score=159.66 Aligned_cols=277 Identities=12% Similarity=0.031 Sum_probs=176.1
Q ss_pred cccCCCHHHHHHHhhhhhccCCCCcccchhhhhccccccccCCChhhhHHhhhhhccccC-C-CChhhHHHHHhhhcccc
Q psy9003 310 AGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGL-F-GTPEQLKYLVDECHKAG 387 (1276)
Q Consensus 310 a~~~gsi~~l~~Lv~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~ie~~~yLi~~~h~~~~-~-~~~e~~~~~~~~~~~a~ 387 (1276)
+...|..+++++++..... ..+ .|..|.|+. |+.+++++|.. +.++. + ....+. .+.|+
T Consensus 73 ~~~~g~~~~~~~~~~~~~~---~~g-------~t~L~~Aa~-~~~~~~~~L~~--~~~n~~d~~~g~t~------Lh~Aa 133 (373)
T 2fo1_E 73 NDFLGDFNHTNLQIPTEPE---PES-------PIKLHTEAA-GSYAITEPITR--ESVNIIDPRHNRTV------LHWIA 133 (373)
T ss_dssp ------------------------C-------CCHHHHHHH-SSSCCCSCCST--TTTTTCCCSSCCCH------HHHHH
T ss_pred CCccccccccccccccCCC---CCC-------ccHHHHHhc-CCchHHHHhcc--ccccccCCcCCCCH------HHHHH
Confidence 4456888888888654321 111 234455555 44588998865 22332 1 223322 33344
Q ss_pred cCCChhHHHHHhh-------hcccccCCCChhhhhcccccchhccccCCHhHHHhhcccccccccCCChhhHHHHHHHHh
Q psy9003 388 LFGTPEQLKYLVD-------ECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECH 460 (1276)
Q Consensus 388 ~~~~id~vkyLi~-------~~h~~~~~~~~~~~~~~vt~lh~a~~~~~~~~~~yli~~~~~~~~~~~~e~l~~l~~~~~ 460 (1276)
..|+.|+|++|+. +..++.-..+..+. ||||.|+..|+.++|++|+..+-..
T Consensus 134 ~~g~~~~v~~Ll~~~~~~ll~~ga~vn~~d~~g~----TpL~~A~~~g~~~iv~~Ll~~ga~~----------------- 192 (373)
T 2fo1_E 134 SNSSAEKSEDLIVHEAKECIAAGADVNAMDCDEN----TPLMLAVLARRRRLVAYLMKAGADP----------------- 192 (373)
T ss_dssp CTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSC----CHHHHHHHHTCHHHHHHHHHTTCCS-----------------
T ss_pred HCCCHHHHHHHHHHHHHHHHhcCCCCcCCCCCCC----CHHHHHHHcChHHHHHHHHHCCCCC-----------------
Confidence 5689999999985 44556666677788 9999999999999999999754221
Q ss_pred HhccCCChhhHHHhhhhhcccccCCChhhhhhhhhhh---hhhccCCCHHHHHHHhhhhcccccCC---CHHHHHHHHhh
Q psy9003 461 KAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDEC---HKAGLFGTPEQLKYLVDECHKAGLFG---TPEQLKYLVDE 534 (1276)
Q Consensus 461 ~~~~~~~~~~~~~~v~~~~~a~~~~~~e~~~~lv~~~---~~~~~~~~~~~~~~~~t~~~~a~~~g---~~e~~~~lv~~ 534 (1276)
+..+... .|..|.|...|..|.+++|++.. .+++.... ...|..+.|+..| .++++++|++.
T Consensus 193 --~~~~~~g-----~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~-----~g~t~L~~A~~~~~~~~~~~v~~Ll~~ 260 (373)
T 2fo1_E 193 --TIYNKSE-----RSALHQAAANRDFGMMVYMLNSTKLKGDIEELDR-----NGMTALMIVAHNEGRDQVASAKLLVEK 260 (373)
T ss_dssp --CCCCTTC-----CCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCT-----TSCCHHHHHHHSCSTTHHHHHHHHHHH
T ss_pred --cccCCCC-----CCHHHHHHHCCCHHHHHHHHhcCccccChhhcCC-----CCCCHHHHHHHhCCcchHHHHHHHHHC
Confidence 1111222 46778888888889989888876 56665443 3467777888777 89999999999
Q ss_pred hhhcCCCCCcc---hhhhhhhhhhccccCCCHHHHHHHHHhh-hhccCCCChhhhhhhhhhhcccccCCCHHHHHHHHhh
Q psy9003 535 CHKAGLFGTPE---QLKYLVDECHKAGLFGTPEQLKYLVDEC-HKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDE 610 (1276)
Q Consensus 535 ~~~~~~~~t~~---~l~~~~~~~~~~~~~~~~e~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~ 610 (1276)
+.+++...... .=...-|..+.|...|++|.+++|++.+ +++|.....- .|..+-|..+|++|.+++|++.
T Consensus 261 g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g-----~TpL~~A~~~g~~~iv~~Ll~~ 335 (373)
T 2fo1_E 261 GAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDG-----KTPIMLAAQEGRIEVVMYLIQQ 335 (373)
T ss_dssp TCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTC-----CCHHHHHHHHTCHHHHHHHHHT
T ss_pred CCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCccCcCCCC-----CCHHHHHHHcCCHHHHHHHHHc
Confidence 98888532210 1113456667777999999999999886 7877332222 4566666688999999999999
Q ss_pred hhhccCCCChhhhhhhHHHhhhccCCCCHHHHHHHHHH
Q psy9003 611 CHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDE 648 (1276)
Q Consensus 611 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 648 (1276)
++++|.+-..- -++++-|..+|+.+.+++|...
T Consensus 336 gad~~~~d~~g-----~t~l~~A~~~g~~~iv~~Ll~~ 368 (373)
T 2fo1_E 336 GASVEAVDATD-----HTARQLAQANNHHNIVDIFDRC 368 (373)
T ss_dssp TCCSSCCCSSS-----CCHHHHHHHTTCHHHHHHHHTT
T ss_pred CCCccCCCCCC-----CCHHHHHHHcCCHHHHHHHHhc
Confidence 99887764443 5667777777888888888753
|
| >3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A | Back alignment and structure |
|---|
Probab=99.38 E-value=1.7e-13 Score=142.72 Aligned_cols=211 Identities=15% Similarity=-0.009 Sum_probs=128.9
Q ss_pred CCChhHHHHHhhhcccccCCCChhhhhcccccchhccccCCHhHHHhhcccccccccCCChhhHHHHHHHHhHhccCCCh
Q psy9003 389 FGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTP 468 (1276)
Q Consensus 389 ~~~id~vkyLi~~~h~~~~~~~~~~~~~~vt~lh~a~~~~~~~~~~yli~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~ 468 (1276)
.|++|.|++|+.....+....+..+. |+||.|+..|+.++|++|+..+. .+...+ ..
T Consensus 16 ~g~~~~v~~ll~~~~~~~~~~~~~g~----t~L~~A~~~g~~~~v~~Ll~~g~-~~~~~~------------------~~ 72 (231)
T 3aji_A 16 SGKLDELKERILADKSLATRTDQDSR----TALHWACSAGHTEIVEFLLQLGV-PVNDKD------------------DA 72 (231)
T ss_dssp HTCHHHHHHHHHHCGGGGGCCCTTSC----CHHHHHHHHTCHHHHHHHHHTTC-CSCCCC------------------TT
T ss_pred hCCHHHHHHHHHhchhhhhcCCCCCC----CHHHHHHHcCcHHHHHHHHHhCC-CCCCcC------------------CC
Confidence 46777777777665555555566666 77777777777777777775431 111111 11
Q ss_pred hhHHHhhhhhcccccCCChhhhhhhhhhhhhhccCCCHHHHHHHhhhhcccccCCCHHHHHHHHhhhhhcCCCCCcchhh
Q psy9003 469 EQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLK 548 (1276)
Q Consensus 469 ~~~~~~v~~~~~a~~~~~~e~~~~lv~~~~~~~~~~~~~~~~~~~t~~~~a~~~g~~e~~~~lv~~~~~~~~~~t~~~l~ 548 (1276)
. .|..|.|...|+.|.+++|++...+++.... ...|+.+.|+..|+++++++|++.+.+++..+.
T Consensus 73 g-----~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~-----~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~----- 137 (231)
T 3aji_A 73 G-----WSPLHIAASAGXDEIVKALLVKGAHVNAVNQ-----NGCTPLHYAASKNRHEIAVMLLEGGANPDAKDH----- 137 (231)
T ss_dssp S-----CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCT-----TSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT-----
T ss_pred C-----CCHHHHHHHcCHHHHHHHHHHcCCCCCCCCC-----CCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCC-----
Confidence 1 3556666666777777777776666654433 235677777777778888888777666664443
Q ss_pred hhhhhhhccccCCCHHHHHHHHHhhhhccCCCChhhhhhhhhhhcccccCCCHHHHHHHHhhhhhccCCCChhhhhhhHH
Q psy9003 549 YLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVD 628 (1276)
Q Consensus 549 ~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~ 628 (1276)
+.-|..+.|...|+++.+++|++.++++|.....- -|..+-|..+|++|.+++|++.+++++.+-..- -+
T Consensus 138 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g-----~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g-----~t 207 (231)
T 3aji_A 138 YDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEG-----NTPLHLACDEERVEEAKFLVTQGASIYIENKEE-----KT 207 (231)
T ss_dssp TSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTS-----CCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTS-----CC
T ss_pred CCCcHHHHHHHcCCHHHHHHHHhcCCCccccCCCC-----CCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCC-----CC
Confidence 33445555667777788888877777766322111 244444556777788888887777776543332 34
Q ss_pred HhhhccCCCCHHHHHHHHH
Q psy9003 629 ECHKAGLFGTPEQLKYLVD 647 (1276)
Q Consensus 629 ~~~~~~~~~~~~~~~~~~~ 647 (1276)
+.+-|...+..+.+++|.+
T Consensus 208 ~l~~A~~~~~~~i~~lL~~ 226 (231)
T 3aji_A 208 PLQVAKGGLGLILKRLAEG 226 (231)
T ss_dssp HHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHcc
Confidence 4444545566666666654
|
| >2ya0_A Putative alkaline amylopullulanase; hydrolase, glycoside hydrolase; 1.85A {Streptococcus pneumoniae} PDB: 2ya2_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=7.5e-13 Score=164.36 Aligned_cols=96 Identities=19% Similarity=0.176 Sum_probs=73.4
Q ss_pred hccceEecCC-cEEEEEEccCCceEEEEe-ecc-CCCcc----e------EEEEEccCcc-------ccceEEEEEecCC
Q psy9003 64 KYGIHVQADN-SVRCFEWAPSAQQLYLTG-NVS-LTPWS----I------MEEASLSSIK-------LIQSIQYILTGVF 123 (1276)
Q Consensus 64 ~fGah~~~~g-g~~f~~wAP~A~~v~l~g-dfn-~~~w~----m------~~~~~~~~~~-------~g~~yky~i~~~~ 123 (1276)
.||||...+| ||+|++|||+|++|.|++ ||| |..+. | +|+++||+++ .|..|+|+|...+
T Consensus 14 ~lGa~~~~~g~gv~F~vwap~A~~V~l~l~~~~~~~~~~~~~~m~~~~~gvW~~~v~~~~~~g~~~~~g~~Y~y~v~~~~ 93 (714)
T 2ya0_A 14 KLGADLKEEGKQVDLTLWSPSADKVSVVVYDKNDPDKVVGTVALEKGERGTWKQTLDSTNKLGITDFTGYYYQYQIERQG 93 (714)
T ss_dssp CCEEEEETTTTEEEEEEECTTCSEEEEEEECSSCTTSEEEEEECEECGGGEEEEEECTTCSSSCSCCTTCEEEEEEEETT
T ss_pred CCCCEEeCCCCEEEEEEECCCCCEEEEEEEeCCCCCccceEEeCccCCCCEEEEEECCccCCCccccCCcEEEEEEEeCC
Confidence 5999988866 699999999999999999 995 43322 5 9999998633 7899999997432
Q ss_pred C-------------CCC------------ccccccc--------------------------ccccccC-----------
Q psy9003 124 G-------------TPE------------QLKYLVD--------------------------ECHKAGL----------- 141 (1276)
Q Consensus 124 g-------------rp~------------~as~~~d--------------------------e~h~gs~----------- 141 (1276)
. +.+ ..|+|+| |||.++|
T Consensus 94 ~~~~~~DPya~~~~~~~~~~~~~~~~~~~~~~~vvd~~~~~~~~~~~~~~~~~~~~~~~viYE~hv~~f~~~~~~~~~~~ 173 (714)
T 2ya0_A 94 KTVLALDPYAKSLAAWNSDDSKIDDAHKVAKAAFVDPAKLGPQDLTYGKIHNFKTREDAVIYEAHVRDFTSDPAIAKDLT 173 (714)
T ss_dssp EEEEECCTTCSEECCCBGGGTTSCGGGSSCCEECCCGGGSSCTTCCCCCCTTCSSGGGCCEEEECHHHHHCCGGGTTTCS
T ss_pred ceEEecCCceeeeccCchhccccCccccCCcEEEEcccccCcccccccccCCCCCccccEEEEEEehhhccCCCCccccc
Confidence 1 101 1234433 9999875
Q ss_pred ---CChHHHHHHHHHHHHhcCc
Q psy9003 142 ---FGTPEQLKYLVDECHKAGL 160 (1276)
Q Consensus 142 ---~~y~e~a~~li~y~~~~~y 160 (1276)
-+|+.|++.| ||+|++|+
T Consensus 174 ~~~Gt~~gi~~~L-~yLk~LGv 194 (714)
T 2ya0_A 174 KPFGTFEAFIEKL-DYLKDLGV 194 (714)
T ss_dssp SCTTSHHHHHTTH-HHHHHHTC
T ss_pred cCCcCHHHHHHHh-HHHHHcCC
Confidence 5899999986 99999875
|
| >2ya1_A Putative alkaline amylopullulanase; hydrolase, glycoside hydrolase; HET: BGC GLC; 2.25A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=99.37 E-value=6.4e-13 Score=170.41 Aligned_cols=58 Identities=19% Similarity=0.251 Sum_probs=48.6
Q ss_pred hccceEecCC-cEEEEEEccCCceEEEEe-ecc-CCCcc----e------EEEEEccCcc-------ccceEEEEEec
Q psy9003 64 KYGIHVQADN-SVRCFEWAPSAQQLYLTG-NVS-LTPWS----I------MEEASLSSIK-------LIQSIQYILTG 121 (1276)
Q Consensus 64 ~fGah~~~~g-g~~f~~wAP~A~~v~l~g-dfn-~~~w~----m------~~~~~~~~~~-------~g~~yky~i~~ 121 (1276)
.||||...+| ||+|++|||+|++|.|++ ||| |..+. | +|+++||+++ .|..|+|+|..
T Consensus 321 ~lGa~~~~~g~gv~F~vwAP~A~~V~L~l~d~~~~~~~~~~~~m~~~~~gvW~~~v~~~~~~g~~~~~G~~Y~y~i~~ 398 (1014)
T 2ya1_A 321 KLGADLKEEGKQVDLTLWSPSADKVSVVVYDKNDPDKVVGTVALEKGERGTWKQTLDSTNKLGITDFTGYYYQYQIER 398 (1014)
T ss_dssp CCEEEEEGGGTEEEEEEECTTCSEEEEEEECSSCTTSEEEEEECEECGGGEEEEEECTTCSSCCSCCTTCEEEEEEEE
T ss_pred CcccEEeCCCCEEEEEEECCCCCEEEEEEEECCCCCccceEEecccCCCCEEEEEEcccccCCccccCCcEEEEEEEe
Confidence 5999988855 799999999999999999 996 54332 6 9999999633 78999999974
|
| >3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A | Back alignment and structure |
|---|
Probab=99.37 E-value=1.9e-13 Score=142.22 Aligned_cols=181 Identities=15% Similarity=-0.005 Sum_probs=106.4
Q ss_pred CChhHHHHHhhhcccccCCCChhhhhcccccchhccccCCHhHHHhhcccccccccCCChhhHHHHHHHHhHhccCCChh
Q psy9003 390 GTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPE 469 (1276)
Q Consensus 390 ~~id~vkyLi~~~h~~~~~~~~~~~~~~vt~lh~a~~~~~~~~~~yli~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~~ 469 (1276)
|++|+|++|+.. .+++...+..+. ||||.|+..|+.+++++|+..+... +..+...
T Consensus 51 g~~~~v~~Ll~~-g~~~~~~~~~g~----t~L~~A~~~~~~~~v~~Ll~~g~~~-------------------~~~~~~g 106 (231)
T 3aji_A 51 GHTEIVEFLLQL-GVPVNDKDDAGW----SPLHIAASAGXDEIVKALLVKGAHV-------------------NAVNQNG 106 (231)
T ss_dssp TCHHHHHHHHHT-TCCSCCCCTTSC----CHHHHHHHHTCHHHHHHHHHTTCCT-------------------TCCCTTS
T ss_pred CcHHHHHHHHHh-CCCCCCcCCCCC----CHHHHHHHcCHHHHHHHHHHcCCCC-------------------CCCCCCC
Confidence 555666655543 233333444555 6777777667777766666543211 1111111
Q ss_pred hHHHhhhhhcccccCCChhhhhhhhhhhhhhccCCCHHHHHHHhhhhcccccCCCHHHHHHHHhhhhhcCCCCCcchhhh
Q psy9003 470 QLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKY 549 (1276)
Q Consensus 470 ~~~~~v~~~~~a~~~~~~e~~~~lv~~~~~~~~~~~~~~~~~~~t~~~~a~~~g~~e~~~~lv~~~~~~~~~~t~~~l~~ 549 (1276)
.|..|.|...|..|.+++|++...+++.... ...|+.+.|+..|+++++++|+..+.+++..+. .
T Consensus 107 -----~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~-----~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~-----~ 171 (231)
T 3aji_A 107 -----CTPLHYAASKNRHEIAVMLLEGGANPDAKDH-----YDATAMHRAAAKGNLKMVHILLFYKASTNIQDT-----E 171 (231)
T ss_dssp -----CCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT-----TSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCT-----T
T ss_pred -----CCHHHHHHHcCCHHHHHHHHHcCCCCCCcCC-----CCCcHHHHHHHcCCHHHHHHHHhcCCCccccCC-----C
Confidence 3455556666666666666666555554433 235677777777888888888877776664443 3
Q ss_pred hhhhhhccccCCCHHHHHHHHHhhhhccCCCChhhhhhhhhhhcccccCCCHHHHHHHHhhhhhc
Q psy9003 550 LVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKA 614 (1276)
Q Consensus 550 ~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~ 614 (1276)
.-|..+.|...|++|.+++|++.+++++.....- -|..+-|...++.+.+++|.+.+++|
T Consensus 172 g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g-----~t~l~~A~~~~~~~i~~lL~~~~a~i 231 (231)
T 3aji_A 172 GNTPLHLACDEERVEEAKFLVTQGASIYIENKEE-----KTPLQVAKGGLGLILKRLAEGEEASM 231 (231)
T ss_dssp SCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTS-----CCHHHHSCHHHHHHHHHHHHHHHHCC
T ss_pred CCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCC-----CCHHHHHHhhHHHHHHHHHccccccC
Confidence 3444555667788888888888877776332222 34444455667777777877776653
|
| >3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=7.9e-13 Score=138.12 Aligned_cols=123 Identities=16% Similarity=0.061 Sum_probs=66.4
Q ss_pred chhhhhhcccccCCCHHHHHHHhhhhhccCCCCcccchhhhhccccccccCCChhhhHHhhhhhccccC-CCChhhHHHH
Q psy9003 301 KYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGL-FGTPEQLKYL 379 (1276)
Q Consensus 301 t~~~~~~~~a~~~gsi~~l~~Lv~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~ie~~~yLi~~~h~~~~-~~~~e~~~~~ 379 (1276)
....|.++.|+..|+++++++|++..-.++ ..+. ...|..+.|+..|++|++++|++.....+. +......
T Consensus 9 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~--~~~~---~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~--- 80 (237)
T 3b7b_A 9 QNKRSPLHAAAEAGHVDICHMLVQAGANID--TCSE---DQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTC--- 80 (237)
T ss_dssp CCSCCHHHHHHHHTCHHHHHHHHHTTCCTT--CCCT---TCCCHHHHHHHTTCHHHHHHHHTTTCCCCCCCTTSCCH---
T ss_pred CCCCCHHHHHHHcCcHHHHHHHHHcCCCcC--ccCC---CCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcH---
Confidence 446678888888888888888877644333 2111 123455666667777777777654332221 1111111
Q ss_pred HhhhcccccCCChhHHHHHhhhcccccCCCChhhhhcccccchhccccCCHhHHHhhcc
Q psy9003 380 VDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVD 438 (1276)
Q Consensus 380 ~~~~~~a~~~~~id~vkyLi~~~h~~~~~~~~~~~~~~vt~lh~a~~~~~~~~~~yli~ 438 (1276)
.+.|...|+.+++++|+.....++-..+..+. ||||.|+..++.+++++|+.
T Consensus 81 ---L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~----t~L~~A~~~~~~~~~~~Ll~ 132 (237)
T 3b7b_A 81 ---LHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGW----TPMIWATEYKHVDLVKLLLS 132 (237)
T ss_dssp ---HHHHHHTTCHHHHHHHHTTTCCCTTCCCTTSC----CHHHHHHHTTCHHHHHHHHH
T ss_pred ---HHHHHHcCCHHHHHHHHhCCCCCcccCCCCCC----CHHHHHHHcCCHHHHHHHHH
Confidence 11122245566666666555444444444455 66666665566666555554
|
| >1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A | Back alignment and structure |
|---|
Probab=99.36 E-value=1.7e-13 Score=142.98 Aligned_cols=152 Identities=14% Similarity=-0.009 Sum_probs=81.4
Q ss_pred hhhcccccCCChhhhhhhhhhhh----hhccCCCHHHHHHHhhhhcccccCCCHHHHHHHHhhhhhcCCCCCcchhhhhh
Q psy9003 476 DECHKAGLFGTPEQLKYLVDECH----KAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLV 551 (1276)
Q Consensus 476 ~~~~~a~~~~~~e~~~~lv~~~~----~~~~~~~~~~~~~~~t~~~~a~~~g~~e~~~~lv~~~~~~~~~~t~~~l~~~~ 551 (1276)
|..|.|...|..|.+++|++... +++.... ...|+.+.|+..|+++++++|++.+.+++..+. .+.-
T Consensus 81 t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~-----~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~----~~g~ 151 (241)
T 1k1a_A 81 TAAHLACEHRSPTCLRALLDSAAPGTLDLEARNY-----DGLTALHVAVNTECQETVQLLLERGADIDAVDI----KSGR 151 (241)
T ss_dssp CHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCT-----TSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCT----TTCC
T ss_pred CHHHHHHHcCCHHHHHHHHHcCCCccccccccCc-----CCCcHHHHHHHcCCHHHHHHHHHcCCCcccccc----cCCC
Confidence 34444445555555555555444 2222211 224566666666777777777776666654331 1233
Q ss_pred hhhhccccCCCHHHHHHHHHhhhhccCCCChhhhhhhhhhhcccccCCCHHHHHHHHhhhhhccCCCChhhhhhhHHHhh
Q psy9003 552 DECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECH 631 (1276)
Q Consensus 552 ~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 631 (1276)
|..+.|...|++|.+++|++.++++|...... .|..+-|...|++|.+++|++.++++|.+-... -++++
T Consensus 152 t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g-----~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g-----~tpl~ 221 (241)
T 1k1a_A 152 SPLIHAVENNSLSMVQLLLQHGANVNAQMYSG-----SSALHSASGRGLLPLVRTLVRSGADSSLKNCHN-----DTPLM 221 (241)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTTCCTTCBCTTS-----CBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTS-----CCTTT
T ss_pred cHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCC-----CCHHHHHHHcCCHHHHHHHHhcCCCCCCcCCCC-----CCHHH
Confidence 44455556677777777777766666222111 344444446677777777777766665543332 44555
Q ss_pred hccCCCCHHHHHHHH
Q psy9003 632 KAGLFGTPEQLKYLV 646 (1276)
Q Consensus 632 ~~~~~~~~~~~~~~~ 646 (1276)
-|...|.+|.++.|.
T Consensus 222 ~A~~~~~~~i~~~l~ 236 (241)
T 1k1a_A 222 VARSRRVIDILRGKA 236 (241)
T ss_dssp TCSSHHHHHHHTC--
T ss_pred HHHhcCcHHHHhhhc
Confidence 555556666666554
|
| >1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A | Back alignment and structure |
|---|
Probab=99.36 E-value=2e-13 Score=145.79 Aligned_cols=210 Identities=11% Similarity=-0.023 Sum_probs=99.7
Q ss_pred CCChhhhHHhhhhhccccC--CCChhhHHHHHhhhcccccCCChhHHHHHhhhcccccCCCChhhhhcccccchhccccC
Q psy9003 351 FGTPEQLKYLVDECHKAGL--FGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFG 428 (1276)
Q Consensus 351 ~g~ie~~~yLi~~~h~~~~--~~~~e~~~~~~~~~~~a~~~~~id~vkyLi~~~h~~~~~~~~~~~~~~vt~lh~a~~~~ 428 (1276)
.++++++++|++..-.++. +.......+ .|+..|++|+|++|+.. ..++-..+.++. ||||.|+..|
T Consensus 33 ~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~------~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~----t~L~~A~~~~ 101 (253)
T 1yyh_A 33 EDAPAVISDFIYQGASLHNQTDRTGETALH------LAARYSRSDAAKRLLEA-SADANIQDNMGR----TPLHAAVSAD 101 (253)
T ss_dssp -------------------CCCTTSCCHHH------HHHHTTCHHHHHHHHHT-TCCTTCCCTTSC----CHHHHHHHHT
T ss_pred CCChHHHHHHHHccCCcccccCCCCCcHHH------HHHHcCCHHHHHHHHHc-CCCCCCCCCCCC----CHHHHHHHcC
Confidence 3466666666655433321 122222222 22234666666666653 234444455555 7777777777
Q ss_pred CHhHHHhhcccccccccCCChhhHHHHHHHHhHhccCCChhhHHHhhhhhcccccCCChhhhhhhhhhhhhhccCCCHHH
Q psy9003 429 TPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQ 508 (1276)
Q Consensus 429 ~~~~~~yli~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~~~~~~~v~~~~~a~~~~~~e~~~~lv~~~~~~~~~~~~~~ 508 (1276)
+.+++++|+..+.......+.+. .|..|.|...|..+.+++|++...++|....
T Consensus 102 ~~~~v~~Ll~~~~~~~~~~~~~g-----------------------~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~--- 155 (253)
T 1yyh_A 102 AQGVFQILIRNRATDLDARMHDG-----------------------TTPLILAARLAVEGMLEDLINSHADVNAVDD--- 155 (253)
T ss_dssp CHHHHHHHHHSTTSCTTCCCTTC-----------------------CCHHHHHHHHTCSSHHHHHHHTTCCTTCBCT---
T ss_pred CHHHHHHHHHcCCCCccccCCCC-----------------------CcHHHHHHHcChHHHHHHHHHcCCCCCCcCC---
Confidence 77777777665443322222111 2444455555555555566555555554432
Q ss_pred HHHHhhhhcccccCCCHHHHHHHHhhhhhcCCCCCcchhhhhhhhhhccccCCCHHHHHHHHHhhhhccCCCChhhhhhh
Q psy9003 509 LKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYL 588 (1276)
Q Consensus 509 ~~~~~t~~~~a~~~g~~e~~~~lv~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 588 (1276)
...|+.+.|+..|+++++++|++.+++++..+. ..-|..+.|...|+.|.+++|++.+++++......
T Consensus 156 --~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~-----~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g----- 223 (253)
T 1yyh_A 156 --LGKSALHWAAAVNNVDAAVVLLKNGANKDMQNN-----REETPLFLAAREGSYETAKVLLDHFANRDITDHMD----- 223 (253)
T ss_dssp --TSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCT-----TSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTC-----
T ss_pred --CCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCC-----CCCCHHHHHHHCCCHHHHHHHHHcCCCccccccCC-----
Confidence 234566666666666666666666666554333 23344444556666666666666666655322221
Q ss_pred hhhhcccccCCCHHHHHHHHh
Q psy9003 589 VDECHKAGLFGTPEQLKYLVD 609 (1276)
Q Consensus 589 ~~~~~~~~~~~~~e~~~~l~~ 609 (1276)
.|..+-|...|+.|.+++|..
T Consensus 224 ~tpl~~A~~~g~~~i~~~l~~ 244 (253)
T 1yyh_A 224 RLPRDIAQERMHHDIVRLLDL 244 (253)
T ss_dssp CCHHHHHHHTTCHHHHHHHHC
T ss_pred CCHHHHHHHcCCHHHHHHHHH
Confidence 344444446666666666543
|
| >1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D | Back alignment and structure |
|---|
Probab=99.36 E-value=1.6e-12 Score=138.55 Aligned_cols=203 Identities=12% Similarity=-0.098 Sum_probs=122.8
Q ss_pred CCChhHHHHHhhhcccccCCCChhhhhcccccchhccccCCHhHHHhhcccccccccCCChhhHHHHHHHHhHhccCCCh
Q psy9003 389 FGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTP 468 (1276)
Q Consensus 389 ~~~id~vkyLi~~~h~~~~~~~~~~~~~~vt~lh~a~~~~~~~~~~yli~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~ 468 (1276)
.|++++|++|+.. .+++-..+..+. ||||.|+..|+.+++++|+..+...........+..........
T Consensus 55 ~g~~~~v~~Ll~~-ga~~~~~~~~g~----tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~------ 123 (282)
T 1oy3_D 55 LGEASTVEKLYAA-GAGVLVAERGGH----TALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDT------ 123 (282)
T ss_dssp HTCHHHHHHHHHT-TCCSSCCCTTSC----CHHHHHTTTTCHHHHHHHSSSCCSSCCCC---------------------
T ss_pred cCCHHHHHHHHHc-CCCCCCCCCCCC----CHHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcch------
Confidence 3566666666653 234444566677 99999999999999999998765543333222111111000000
Q ss_pred hhHHHhhhhhcccc-cCCChhhhhhhhhhhhhhccCCCHHHHHHHhhhhcccccCCCHHHHHHHHhhhhhcCCCCCcchh
Q psy9003 469 EQLKYLVDECHKAG-LFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQL 547 (1276)
Q Consensus 469 ~~~~~~v~~~~~a~-~~~~~e~~~~lv~~~~~~~~~~~~~~~~~~~t~~~~a~~~g~~e~~~~lv~~~~~~~~~~t~~~l 547 (1276)
. .+..+.+. .....+....+......++.... ...|+.+.|+..|+++++++|++.+++++..+..
T Consensus 124 ~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~--- 190 (282)
T 1oy3_D 124 S-----HAPAAVDSQPNPENEEEPRDEDWRLQLEAENY-----DGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPT--- 190 (282)
T ss_dssp -------------------------CCCGGGGTTCCCT-----TSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTT---
T ss_pred h-----cchhhhccccccchhhhhhhhhhhhcCCCcCC-----CCcCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCC---
Confidence 0 01111111 11122333344444444444332 3468899999999999999999999888854421
Q ss_pred hhhhhhhhccccCCCHHHHHHHHHhhhhccCCCChhhhhhhhhhhcccccCCCHHHHHHHHhhhhhccCCCChh
Q psy9003 548 KYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPE 621 (1276)
Q Consensus 548 ~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~~ 621 (1276)
+.-|..+.|...|+++.+++|++.++++|.....- .|..+-|...|+.|.+++|++.++++|.+-..-
T Consensus 191 -~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g-----~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g 258 (282)
T 1oy3_D 191 -CGRTPLHLAVEAQAASVLELLLKAGADPTARMYGG-----RTPLGSALLRPNPILARLLRAHGAPEPEDGGDK 258 (282)
T ss_dssp -TCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTS-----CCHHHHHHTSSCHHHHHHHHHTTCCCCCCC---
T ss_pred -CCcCHHHHHHHcCCHHHHHHHHHcCCCCcccccCC-----CCHHHHHHHcCCcHHHHHHHHcCCCcCcCCCcc
Confidence 34566677779999999999999999988433222 456666669999999999999999998765443
|
| >3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=1.3e-12 Score=136.59 Aligned_cols=221 Identities=13% Similarity=-0.020 Sum_probs=113.8
Q ss_pred ccccccccCCChhhhHHhhhhhccccC-CCChhhHHHHHhhhcccccCCChhHHHHHhhhcccccCCCChhhhhcccccc
Q psy9003 343 DECHKAGLFGTPEQLKYLVDECHKAGL-FGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDEC 421 (1276)
Q Consensus 343 ~~~~~a~~~g~ie~~~yLi~~~h~~~~-~~~~e~~~~~~~~~~~a~~~~~id~vkyLi~~~h~~~~~~~~~~~~~~vt~l 421 (1276)
|..+.|+..|++|++++|++..-.++. +....... +.|...|++|+|++|+.. .+++-..+.++. |+|
T Consensus 13 t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L------~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~----t~L 81 (237)
T 3b7b_A 13 SPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPL------MEAAENNHLEAVKYLIKA-GALVDPKDAEGS----TCL 81 (237)
T ss_dssp CHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHH------HHHHHTTCHHHHHHHHTT-TCCCCCCCTTSC----CHH
T ss_pred CHHHHHHHcCcHHHHHHHHHcCCCcCccCCCCCCHH------HHHHHhCCHHHHHHHHhC-CCCCCCCCCCCC----cHH
Confidence 444555666666666666655433331 11222111 222224666666666643 223333444455 666
Q ss_pred hhccccCCHhHHHhhcccccccccCCChhhHHHHHHHHhHhccCCChhhHHHhhhhhcccccCCChhhhhhhhhhhhhhc
Q psy9003 422 HKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAG 501 (1276)
Q Consensus 422 h~a~~~~~~~~~~yli~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~~~~~~~v~~~~~a~~~~~~e~~~~lv~~~~~~~ 501 (1276)
|.|+..|+.+++++|+..+.......+... .|..|.|...|..|.+++|++.+.+++
T Consensus 82 ~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g-----------------------~t~L~~A~~~~~~~~~~~Ll~~g~~~~ 138 (237)
T 3b7b_A 82 HLAAKKGHYEVVQYLLSNGQMDVNCQDDGG-----------------------WTPMIWATEYKHVDLVKLLLSKGSDIN 138 (237)
T ss_dssp HHHHHTTCHHHHHHHHTTTCCCTTCCCTTS-----------------------CCHHHHHHHTTCHHHHHHHHHTTCCTT
T ss_pred HHHHHcCCHHHHHHHHhCCCCCcccCCCCC-----------------------CCHHHHHHHcCCHHHHHHHHHCCCCCC
Confidence 666666666666666665544333333222 233444555555555666665555555
Q ss_pred cCCCHHHHHHHhhhhcccccCCCHHHHHHHHhhhhhcCCCCCcchhhhhhhhhhccccCCCHHHHHHHHHhhhhccCCCC
Q psy9003 502 LFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGT 581 (1276)
Q Consensus 502 ~~~~~~~~~~~~t~~~~a~~~g~~e~~~~lv~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~ 581 (1276)
.... ...|+.+.|+..|+.+++++|++.+.+++..+. ..-|..+.|...|+.+.+++|++.+++++....
T Consensus 139 ~~~~-----~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~-----~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~d~ 208 (237)
T 3b7b_A 139 IRDN-----EENICLHWAAFSGCVDIAEILLAAKCDLHAVNI-----HGDSPLHIAARENRYDCVVLFLSRDSDVTLKNK 208 (237)
T ss_dssp CCCT-----TSCCHHHHHHHHCCHHHHHHHHTTTCCTTCCCT-----TCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCT
T ss_pred ccCC-----CCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCC-----CCCCHHHHHHHhCCHhHHHHHHHcCCCCCccCC
Confidence 4332 224555666666666666666666666554333 223344445566666666666666666663322
Q ss_pred hhhhhhhhhhhcccccCCCHHHHHHHHhhhh
Q psy9003 582 PEQLKYLVDECHKAGLFGTPEQLKYLVDECH 612 (1276)
Q Consensus 582 ~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~ 612 (1276)
.- -|..+-|...|+++.+..|+...+
T Consensus 209 ~g-----~t~l~~A~~~~~~~~~~~l~~~l~ 234 (237)
T 3b7b_A 209 EG-----ETPLQCASLNSQVWSALQMSKALQ 234 (237)
T ss_dssp TS-----CCHHHHSCTTCHHHHHHHHHHHHH
T ss_pred CC-----CCHHHHHHHHHHHHHHHHHHHHhh
Confidence 22 234444445666655555555443
|
| >1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A | Back alignment and structure |
|---|
Probab=99.35 E-value=2.4e-13 Score=145.10 Aligned_cols=211 Identities=11% Similarity=-0.005 Sum_probs=145.2
Q ss_pred CCChhHHHHHhhhcccccCCCChhhhhcccccchhccccCCHhHHHhhcccccccccCCChhhHHHHHHHHhHhccCCCh
Q psy9003 389 FGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTP 468 (1276)
Q Consensus 389 ~~~id~vkyLi~~~h~~~~~~~~~~~~~~vt~lh~a~~~~~~~~~~yli~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~ 468 (1276)
.+++++|++|+...-..+...+..+. |+||.|+..|+.++|++|+..+-. + +..+..
T Consensus 33 ~~~~~~v~~Ll~~g~~~~~~~d~~g~----t~L~~A~~~g~~~~v~~Ll~~g~~-~------------------~~~~~~ 89 (253)
T 1yyh_A 33 EDAPAVISDFIYQGASLHNQTDRTGE----TALHLAARYSRSDAAKRLLEASAD-A------------------NIQDNM 89 (253)
T ss_dssp -------------------CCCTTSC----CHHHHHHHTTCHHHHHHHHHTTCC-T------------------TCCCTT
T ss_pred CCChHHHHHHHHccCCcccccCCCCC----cHHHHHHHcCCHHHHHHHHHcCCC-C------------------CCCCCC
Confidence 57999999999876655556677888 999999999999999999975422 1 111111
Q ss_pred hhHHHhhhhhcccccCCChhhhhhhhhhhh-hhccCCCHHHHHHHhhhhcccccCCCHHHHHHHHhhhhhcCCCCCcchh
Q psy9003 469 EQLKYLVDECHKAGLFGTPEQLKYLVDECH-KAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQL 547 (1276)
Q Consensus 469 ~~~~~~v~~~~~a~~~~~~e~~~~lv~~~~-~~~~~~~~~~~~~~~t~~~~a~~~g~~e~~~~lv~~~~~~~~~~t~~~l 547 (1276)
. .|..|.|...|..|.+++|++... .++.... ...|+.+.|+..|+.+++++|+..+.++|..+.
T Consensus 90 g-----~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~-----~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~---- 155 (253)
T 1yyh_A 90 G-----RTPLHAAVSADAQGVFQILIRNRATDLDARMH-----DGTTPLILAARLAVEGMLEDLINSHADVNAVDD---- 155 (253)
T ss_dssp S-----CCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCT-----TCCCHHHHHHHHTCSSHHHHHHHTTCCTTCBCT----
T ss_pred C-----CCHHHHHHHcCCHHHHHHHHHcCCCCccccCC-----CCCcHHHHHHHcChHHHHHHHHHcCCCCCCcCC----
Confidence 2 467788888888888888888765 5554433 346888889999999999999999888875554
Q ss_pred hhhhhhhhccccCCCHHHHHHHHHhhhhccCCCChhhhhhhhhhhcccccCCCHHHHHHHHhhhhhccCCCChhhhhhhH
Q psy9003 548 KYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLV 627 (1276)
Q Consensus 548 ~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~~~ 627 (1276)
+.-|..+.|...|+++.+++|++.++++|.....- .|..+-|..+|+.|.+++|++.+++++.+-... .
T Consensus 156 -~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g-----~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g-----~ 224 (253)
T 1yyh_A 156 -LGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNRE-----ETPLFLAAREGSYETAKVLLDHFANRDITDHMD-----R 224 (253)
T ss_dssp -TSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTS-----CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTC-----C
T ss_pred -CCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCC-----CCHHHHHHHCCCHHHHHHHHHcCCCccccccCC-----C
Confidence 45566677778999999999999999988433222 455666668899999999999999987764443 5
Q ss_pred HHhhhccCCCCHHHHHHHHH
Q psy9003 628 DECHKAGLFGTPEQLKYLVD 647 (1276)
Q Consensus 628 ~~~~~~~~~~~~~~~~~~~~ 647 (1276)
++++-|...|+.|.+++|.+
T Consensus 225 tpl~~A~~~g~~~i~~~l~~ 244 (253)
T 1yyh_A 225 LPRDIAQERMHHDIVRLLDL 244 (253)
T ss_dssp CHHHHHHHTTCHHHHHHHHC
T ss_pred CHHHHHHHcCCHHHHHHHHH
Confidence 66666777788888888764
|
| >3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.35 E-value=3.9e-13 Score=139.18 Aligned_cols=217 Identities=14% Similarity=0.072 Sum_probs=135.5
Q ss_pred cCCChhHHHHHhhhcccccCCCChhhhhcccccchhccccCCHhHHHhhcccccccccCCChhhHHHHHHHHhHhccCCC
Q psy9003 388 LFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGT 467 (1276)
Q Consensus 388 ~~~~id~vkyLi~~~h~~~~~~~~~~~~~~vt~lh~a~~~~~~~~~~yli~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~ 467 (1276)
..|++|++++|+... .++-..+..+. |+||.|+..|+.++|++|+..+.......+...
T Consensus 18 ~~g~~~~~~~Ll~~g-~~~~~~~~~g~----t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~---------------- 76 (240)
T 3eu9_A 18 QYGIYERCRELVEAG-YDVRQPDKENV----TLLHWAAINNRIDLVKYYISKGAIVDQLGGDLN---------------- 76 (240)
T ss_dssp HTTCHHHHHHHHHTT-CCTTCCCTTSC----CHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTT----------------
T ss_pred HcCChHHHHHHHHcC-CCcCCCCCCCC----CHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcC----------------
Confidence 356777777777644 33334445555 888888888888888888876543322221111
Q ss_pred hhhHHHhhhhhcccccCCChhhhhhhhhhhhhhccCCCHHHHHHHhhhhcccccCCCHHHHHHHHhhhhhcCCCCCcchh
Q psy9003 468 PEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQL 547 (1276)
Q Consensus 468 ~~~~~~~v~~~~~a~~~~~~e~~~~lv~~~~~~~~~~~~~~~~~~~t~~~~a~~~g~~e~~~~lv~~~~~~~~~~t~~~l 547 (1276)
.|..|.|...|+.|.+++|++...+++.... ...|+.+.|+..|+++++++|++.+.+++..+.
T Consensus 77 -------~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~-----~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~---- 140 (240)
T 3eu9_A 77 -------STPLHWATRQGHLSMVVQLMKYGADPSLIDG-----EGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQ---- 140 (240)
T ss_dssp -------BCHHHHHHHHTCHHHHHHHHHTTCCTTCCCT-----TSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT----
T ss_pred -------CChhHHHHHcCCHHHHHHHHHcCCCCcccCC-----CCCCHHHHHHHcCHHHHHHHHHhcCCCccccCC----
Confidence 3555666667777777777776666654432 235677778888888888888887777664443
Q ss_pred hhhhhhhhccccCC-CHHHHHHHHHhhhhccCCCC-hhhhhhhhhhhcccccCCCHHHHHHHHhhhhhccCCCChhhhhh
Q psy9003 548 KYLVDECHKAGLFG-TPEQLKYLVDECHKAGLFGT-PEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKY 625 (1276)
Q Consensus 548 ~~~~~~~~~~~~~~-~~e~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~ 625 (1276)
...|..+.|+..+ +.+.+++|.+.+.+++.... .. -|..+-|..+|++|.+++|++.+++++.+-...
T Consensus 141 -~g~t~l~~a~~~~~~~~~~~~L~~~~~~~~~~~~~~g-----~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g---- 210 (240)
T 3eu9_A 141 -NGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHK-----NTALHWAVLAGNTTVISLLLEAGANVDAQNIKG---- 210 (240)
T ss_dssp -TSCCHHHHHHHHCCSSTTHHHHHHTTCCTTCCCTTTC-----CCHHHHHHHHTCHHHHHHHHHHTCCTTCBCTTS----
T ss_pred -CCCcHHHHHHHhCChHHHHHHHHhcCCCcchhhccCC-----CcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCC----
Confidence 2334444444344 37788888888888773322 11 234444557788888888888887776554333
Q ss_pred hHHHhhhccCCCCHHHHHHHHHHHHhh
Q psy9003 626 LVDECHKAGLFGTPEQLKYLVDECHKA 652 (1276)
Q Consensus 626 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 652 (1276)
.++++-|...|.++.+++|++..++.
T Consensus 211 -~t~l~~A~~~~~~~~v~~L~~~~~~~ 236 (240)
T 3eu9_A 211 -ESALDLAKQRKNVWMINHLQEARQAK 236 (240)
T ss_dssp -CBHHHHHHHTTCHHHHHHHHHHC---
T ss_pred -CCHHHHHHHcCcHHHHHHHHHhhhcc
Confidence 45566666667778887777765553
|
| >3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.34 E-value=1.6e-12 Score=142.15 Aligned_cols=218 Identities=13% Similarity=0.009 Sum_probs=131.1
Q ss_pred ccccccccCCChhhhHHhhhhhccccC-CCChhhHHHHHhhhcccccCCChhHHHHHhhhcccccCCCChhhhhcccccc
Q psy9003 343 DECHKAGLFGTPEQLKYLVDECHKAGL-FGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDEC 421 (1276)
Q Consensus 343 ~~~~~a~~~g~ie~~~yLi~~~h~~~~-~~~~e~~~~~~~~~~~a~~~~~id~vkyLi~~~h~~~~~~~~~~~~~~vt~l 421 (1276)
|..+.|+..|++|+|++|++..-.++. +....... +-|...|++++|++|+.. ..++-..+.++. |||
T Consensus 61 t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L------~~A~~~g~~~~v~~Ll~~-ga~~~~~~~~g~----t~L 129 (285)
T 3d9h_A 61 SPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPL------HEACLGGHLSCVKILLKH-GAQVNGVTADWH----TPL 129 (285)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTTCCSCEECTTCCCHH------HHHHHTTCHHHHHHHHHT-TCCSSCCCTTCC----CHH
T ss_pred CHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHH------HHHHHCCcHHHHHHHHHC-CCCCCCCCCCCC----CHH
Confidence 455666666777777777664432221 22222222 222335677777777764 234444556666 888
Q ss_pred hhccccCCHhHHHhhcccccccccCCChhhHHHHHHHHhHhccCCChhhHHHhhhhhcccccCCChhhhhhhhhhhhhhc
Q psy9003 422 HKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAG 501 (1276)
Q Consensus 422 h~a~~~~~~~~~~yli~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~~~~~~~v~~~~~a~~~~~~e~~~~lv~~~~~~~ 501 (1276)
|.|+..|+.++|++|+..+.... .+ +. -.|..|.|...|..|.+++|++...+++
T Consensus 130 ~~A~~~~~~~~v~~Ll~~g~~~~--~~------------------~~-----g~t~L~~A~~~g~~~~v~~Ll~~g~~~~ 184 (285)
T 3d9h_A 130 FNACVSGSWDCVNLLLQHGASVQ--PE------------------SD-----LASPIHEAARRGHVECVNSLIAYGGNID 184 (285)
T ss_dssp HHHHHHTCHHHHHHHHHTTCCSS--CS------------------CT-----TSCHHHHHHHHTCHHHHHHHHHTTCCTT
T ss_pred HHHHHcCHHHHHHHHHHCCCCCC--CC------------------CC-----CCCHHHHHHHcCCHHHHHHHHHCCCCCC
Confidence 88888888888888876532111 00 00 1356666777777777777777776666
Q ss_pred cCCCHHHHHHHhhhhcccccCCCHHHHHHHHhhhhhcCCCCCcchhhhhhhhhhccccCCCHHHHHHHHHhhhhccCCCC
Q psy9003 502 LFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGT 581 (1276)
Q Consensus 502 ~~~~~~~~~~~~t~~~~a~~~g~~e~~~~lv~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~ 581 (1276)
.... ...|+.+.|+..|+++++++|++.+++++.+ . ..-|..+.|...|+.|.+++|++.+++++....
T Consensus 185 ~~d~-----~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~-~-----~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~d~ 253 (285)
T 3d9h_A 185 HKIS-----HLGTPLYLACENQQRACVKKLLESGADVNQG-K-----GQDSPLHAVVRTASEELACLLMDFGADTQAKNA 253 (285)
T ss_dssp CCBT-----TTBCHHHHHHHTTCHHHHHHHHHTTCCTTCC-B-----TTBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT
T ss_pred CcCC-----CCCCHHHHHHHcCcHHHHHHHHHCCCCCCCC-C-----CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCC
Confidence 5543 3357778888888888888888887777632 1 233555666678888888888888888773322
Q ss_pred hhhhhhhhhhhcccccCCCHHHHHHHHhh-hhhc
Q psy9003 582 PEQLKYLVDECHKAGLFGTPEQLKYLVDE-CHKA 614 (1276)
Q Consensus 582 ~~~~~~~~~~~~~~~~~~~~e~~~~l~~~-~~~~ 614 (1276)
.- -|..+-|. ++.+.+++|+.. ++++
T Consensus 254 ~g-----~t~l~~A~--~~~~~~~~Ll~~~~a~l 280 (285)
T 3d9h_A 254 EG-----KRPVELVP--PESPLAQLFLEREGASL 280 (285)
T ss_dssp TS-----CCGGGGSC--TTSHHHHHHHHHC----
T ss_pred CC-----CCHHHHhc--CccHHHHHHHHhhccCC
Confidence 22 33344444 345778888876 5554
|
| >2fhf_A Pullulanase; multiple domain, beta-alpha-barrel, alpha-amylase-family, complex with maltotetraose, hydrolase; HET: GLC; 1.65A {Klebsiella aerogenes} SCOP: b.1.18.2 b.1.18.2 b.3.1.3 b.71.1.1 c.1.8.1 PDB: 2fh6_A* 2fh8_A* 2fhb_A* 2fhc_A* 2fgz_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=1.4e-12 Score=167.70 Aligned_cols=54 Identities=26% Similarity=0.237 Sum_probs=48.7
Q ss_pred hccceEecCCcEEEEEEccCCceEEEEe-eccCCCcc-----e-------EEEEEccCccccceEEEEEe
Q psy9003 64 KYGIHVQADNSVRCFEWAPSAQQLYLTG-NVSLTPWS-----I-------MEEASLSSIKLIQSIQYILT 120 (1276)
Q Consensus 64 ~fGah~~~~gg~~f~~wAP~A~~v~l~g-dfn~~~w~-----m-------~~~~~~~~~~~g~~yky~i~ 120 (1276)
.||||.. .+|++|++|||+|++|.|++ || ++|. | ||++++|++++|+.|+|+|.
T Consensus 296 ~lGa~~~-~~gv~F~vwAP~A~~V~L~l~d~--~~~~~~~~~m~~~~~~GvW~~~v~~~~~G~~Y~y~v~ 362 (1083)
T 2fhf_A 296 SYGAQLT-DSGVTFRVWAPTAQQVELVIYSA--DKKVIASHPMTRDSASGAWSWQGGSDLKGAFYRYAMT 362 (1083)
T ss_dssp CCEEEEE-TTEEEEEEECTTCSEEEEEEECT--TCCEEEEEECEECTTTCEEEEEECGGGTTCEEEEEEE
T ss_pred CceeEEE-CCeEEEEEECCCCCEEEEEEEcC--CCCccceEECeECCCCCEEEEEECCCCCCCEEEEEEE
Confidence 6999976 45799999999999999999 99 5564 5 99999999999999999997
|
| >3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.32 E-value=2.2e-12 Score=140.91 Aligned_cols=211 Identities=14% Similarity=-0.005 Sum_probs=156.6
Q ss_pred ccccCCChhHHHHHhhhcccccCCCChhhhhcccccchhccccCCHhHHHhhcccccccccCCChhhHHHHHHHHhHhcc
Q psy9003 385 KAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGL 464 (1276)
Q Consensus 385 ~a~~~~~id~vkyLi~~~h~~~~~~~~~~~~~~vt~lh~a~~~~~~~~~~yli~~~~~~~~~~~~e~l~~l~~~~~~~~~ 464 (1276)
.|...|++++|++|+... +++-..+.++. ||||.|+..|+.++|++|+..+-. ....+
T Consensus 65 ~Aa~~g~~~~v~~Ll~~g-~~~~~~~~~g~----t~L~~A~~~g~~~~v~~Ll~~ga~-~~~~~---------------- 122 (285)
T 3d9h_A 65 EAAIHGHQLSLRNLISQG-WAVNIITADHV----SPLHEACLGGHLSCVKILLKHGAQ-VNGVT---------------- 122 (285)
T ss_dssp HHHHTTCHHHHHHHHHTT-CCSCEECTTCC----CHHHHHHHTTCHHHHHHHHHTTCC-SSCCC----------------
T ss_pred HHHHcCCHHHHHHHHHCC-CCCCCcCCCCC----CHHHHHHHCCcHHHHHHHHHCCCC-CCCCC----------------
Confidence 344468999999999853 44545566777 999999999999999999976422 11111
Q ss_pred CCChhhHHHhhhhhcccccCCChhhhhhhhhhhhhhccCCCHHHHHHHhhhhcccccCCCHHHHHHHHhhhhhcCCCCCc
Q psy9003 465 FGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTP 544 (1276)
Q Consensus 465 ~~~~~~~~~~v~~~~~a~~~~~~e~~~~lv~~~~~~~~~~~~~~~~~~~t~~~~a~~~g~~e~~~~lv~~~~~~~~~~t~ 544 (1276)
... .|..|.|...|+.|.+++|++...+++.... ..|+.+.|+..|+++++++|+..+.+++..+.
T Consensus 123 --~~g-----~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~------g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~- 188 (285)
T 3d9h_A 123 --ADW-----HTPLFNACVSGSWDCVNLLLQHGASVQPESD------LASPIHEAARRGHVECVNSLIAYGGNIDHKIS- 188 (285)
T ss_dssp --TTC-----CCHHHHHHHHTCHHHHHHHHHTTCCSSCSCT------TSCHHHHHHHHTCHHHHHHHHHTTCCTTCCBT-
T ss_pred --CCC-----CCHHHHHHHcCHHHHHHHHHHCCCCCCCCCC------CCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCC-
Confidence 112 4677888888889999999888777664321 46888999999999999999999888775444
Q ss_pred chhhhhhhhhhccccCCCHHHHHHHHHhhhhccCCCChhhhhhhhhhhcccccCCCHHHHHHHHhhhhhccCCCChhhhh
Q psy9003 545 EQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLK 624 (1276)
Q Consensus 545 ~~l~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~~ 624 (1276)
..-|..+.|...|+.|.+++|++.++++|.+. ..-|..+-|...|++|.+++|++.++++|.+-+.-
T Consensus 189 ----~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~------~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~d~~g--- 255 (285)
T 3d9h_A 189 ----HLGTPLYLACENQQRACVKKLLESGADVNQGK------GQDSPLHAVVRTASEELACLLMDFGADTQAKNAEG--- 255 (285)
T ss_dssp ----TTBCHHHHHHHTTCHHHHHHHHHTTCCTTCCB------TTBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTS---
T ss_pred ----CCCCHHHHHHHcCcHHHHHHHHHCCCCCCCCC------CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCC---
Confidence 34466677779999999999999998888311 12356666668999999999999999887665444
Q ss_pred hhHHHhhhccCCCCHHHHHHHHHH
Q psy9003 625 YLVDECHKAGLFGTPEQLKYLVDE 648 (1276)
Q Consensus 625 ~~~~~~~~~~~~~~~~~~~~~~~~ 648 (1276)
-++.+-|. ...+.++.|+..
T Consensus 256 --~t~l~~A~--~~~~~~~~Ll~~ 275 (285)
T 3d9h_A 256 --KRPVELVP--PESPLAQLFLER 275 (285)
T ss_dssp --CCGGGGSC--TTSHHHHHHHHH
T ss_pred --CCHHHHhc--CccHHHHHHHHh
Confidence 55666666 345778888764
|
| >1ji1_A Alpha-amylase I; beta/alpha barrel, hydrolase; 1.60A {Thermoactinomyces vulgaris} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 1uh3_A* 2d0f_A* 1izj_A 1uh4_A* 1uh2_A* 2d0g_A* 2d0h_A* 1izk_A | Back alignment and structure |
|---|
Probab=99.32 E-value=2.4e-12 Score=157.77 Aligned_cols=110 Identities=12% Similarity=0.141 Sum_probs=87.8
Q ss_pred ccceEecCCcEEEEEE----ccCCceEEEEeeccCCCcc---e------------EEEEEccCccccceEEEEEecCCC-
Q psy9003 65 YGIHVQADNSVRCFEW----APSAQQLYLTGNVSLTPWS---I------------MEEASLSSIKLIQSIQYILTGVFG- 124 (1276)
Q Consensus 65 fGah~~~~gg~~f~~w----AP~A~~v~l~gdfn~~~w~---m------------~~~~~~~~~~~g~~yky~i~~~~g- 124 (1276)
||| ..++||+|++| ||+|++|.|+|+||+ ... | +|+++||++++|+.|+|+|.+.++
T Consensus 24 ~Ga--~~~~~v~f~v~~~~~ap~a~~V~l~~~~~~-~~~~~~m~~~~~~~~~~~~~w~~~i~~~~~g~~Y~f~i~~~~~~ 100 (637)
T 1ji1_A 24 PEP--TSTQSVTLKLRTFKGDITSANIKYWDTADN-AFHWVPMVWDSNDPTGTFDYWKGTIPASPSIKYYRFQINDGTST 100 (637)
T ss_dssp SSC--CTTCCEEEEEEEETTCCSEEEEEEEETTTT-EEEEEECEEEEECTTSSEEEEEEEECCCSSCEEEEEEEEETTEE
T ss_pred CCC--CCCCEEEEEEEEecCcCCeeEEEEEEecCC-CEEEEEeEEeeccccCCeeEEEEEEECCCceEEEEEEEEECCeE
Confidence 598 34568999999 999999999999963 221 3 799999999999999999987654
Q ss_pred -----------C--------------CC--cccccccccccccC------------------------------------
Q psy9003 125 -----------T--------------PE--QLKYLVDECHKAGL------------------------------------ 141 (1276)
Q Consensus 125 -----------r--------------p~--~as~~~de~h~gs~------------------------------------ 141 (1276)
. |. ..++|| |||..+|
T Consensus 101 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~W~~~~viY-qi~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~ 179 (637)
T 1ji1_A 101 AWYNGNGPSSTEPNADDFYIIPNFKTPDWLKNGVMY-QIFPDRFYNGDSSNDVQTGSYTYNGTPTEKKAWGSSVYADPGY 179 (637)
T ss_dssp EEEETTEEESSCCSSCCEEECTTCCCCHHHHHCCEE-EECGGGTCCSCGGGCCCTTSCEETTEECEECCTTSCCSCCTTS
T ss_pred EEEeCCcccccCCCcceeEeecCCCCCchhhCCcEE-EEecccccCCCCcccccccccccccccccccccccCccccccc
Confidence 1 11 122332 4444443
Q ss_pred ------C--ChHHHHHHHHHHHHh-cCc----------------------------CCCHHHHHHHHHHHHHcC--C
Q psy9003 142 ------F--GTPEQLKYLVDECHK-AGL----------------------------FGTPEQLKYLVDECHKAG--L 179 (1276)
Q Consensus 142 ------~--~y~e~a~~li~y~~~-~~y----------------------------ygtp~~l~~~vd~~h~~~--i 179 (1276)
+ +|+.|++.| ||||+ +|+ |||++||+.||++||++| |
T Consensus 180 ~~~~~f~gG~~~gi~~~L-dyLk~~LGvt~I~L~Pi~~~~~~~GYd~~dy~~id~~~Gt~~dfk~LV~~~H~~G~~I 255 (637)
T 1ji1_A 180 DNSLVFFGGDLAGIDQKL-GYIKKTLGANILYLNPIFKAPTNHKYDTQDYMAVDPAFGDNSTLQTLINDIHSTANGP 255 (637)
T ss_dssp CGGGEECCCCHHHHHHTH-HHHHTTTCCCEEEESCCEECSSSSCCSCSEEEEECTTTCCHHHHHHHHHHHHCSSSSS
T ss_pred CCcccccCcCHHHHHHhH-HHHHhccCCCEEEECCCccCCCCCCcCccchhhhccccCCHHHHHHHHHHHHhCCCCc
Confidence 2 799999998 99999 998 999999999999999999 9
|
| >1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A | Back alignment and structure |
|---|
Probab=99.32 E-value=3.8e-13 Score=140.28 Aligned_cols=228 Identities=13% Similarity=-0.014 Sum_probs=156.3
Q ss_pred ChhhhhcccccchhccccCCHhHHHhhcccccccccCCChhhHHHHHHHHhHhccCCChhhHHHhhhhhcccccCCChhh
Q psy9003 410 TPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQ 489 (1276)
Q Consensus 410 ~~~~~~~~vt~lh~a~~~~~~~~~~yli~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~~~~~~~v~~~~~a~~~~~~e~ 489 (1276)
+.++. |+||.|+..|+.++|++|+... ......++..+... .|..|.|...|+.|.
T Consensus 6 d~~g~----t~L~~A~~~g~~~~v~~Ll~~~---------------~~~~~~~~~~~~~g-----~t~L~~A~~~~~~~~ 61 (241)
T 1k1a_A 6 DEDGD----TPLHIAVVQGNLPAVHRLVNLF---------------QQGGRELDIYNNLR-----QTPLHLAVITTLPSV 61 (241)
T ss_dssp -CTTC----CHHHHHHHTTCHHHHHHHHHHH---------------HHTTCCSCCCCTTS-----CCHHHHHHHTTCHHH
T ss_pred CCCCC----cHHHHHHHcCCHHHHHHHHHHH---------------HhcCCCCCcccccC-----CCHHHHHHHcCCHHH
Confidence 45566 9999999999999999998621 11111122222222 577788888889999
Q ss_pred hhhhhhhhhhhccCCCHHHHHHHhhhhcccccCCCHHHHHHHHhhhh----hcCCCCCcchhhhhhhhhhccccCCCHHH
Q psy9003 490 LKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECH----KAGLFGTPEQLKYLVDECHKAGLFGTPEQ 565 (1276)
Q Consensus 490 ~~~lv~~~~~~~~~~~~~~~~~~~t~~~~a~~~g~~e~~~~lv~~~~----~~~~~~t~~~l~~~~~~~~~~~~~~~~e~ 565 (1276)
+++|++....++.... ...|+.+.|+..|+++++++|++.+. +++..+. ...|..+.|...|+.+.
T Consensus 62 v~~Ll~~g~~~~~~~~-----~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~-----~g~t~L~~A~~~~~~~~ 131 (241)
T 1k1a_A 62 VRLLVTAGASPMALDR-----HGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNY-----DGLTALHVAVNTECQET 131 (241)
T ss_dssp HHHHHHTTCCTTCCCT-----TSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCT-----TSCCHHHHHHHHTCHHH
T ss_pred HHHHHHcCCCccccCC-----CCCCHHHHHHHcCCHHHHHHHHHcCCCccccccccCc-----CCCcHHHHHHHcCCHHH
Confidence 9999988877775543 34688899999999999999999987 3333222 34455566778899999
Q ss_pred HHHHHHhhhhccCCCChhhhhhhhhhhcccccCCCHHHHHHHHhhhhhccCCCChhhhhhhHHHhhhccCCCCHHHHHHH
Q psy9003 566 LKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYL 645 (1276)
Q Consensus 566 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 645 (1276)
+++|++.+.+++..... ..-|..+.|...|++|.+++|++.++++|.+-... .++++.|..+|.+|.+++|
T Consensus 132 ~~~Ll~~g~~~~~~~~~----~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g-----~t~L~~A~~~~~~~~v~~L 202 (241)
T 1k1a_A 132 VQLLLERGADIDAVDIK----SGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSG-----SSALHSASGRGLLPLVRTL 202 (241)
T ss_dssp HHHHHHTTCCTTCCCTT----TCCCHHHHHHHTTCHHHHHHHHHTTCCTTCBCTTS-----CBHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHcCCCccccccc----CCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCC-----CCHHHHHHHcCCHHHHHHH
Confidence 99999999888843210 01344455558899999999999988887654433 5667777777899999998
Q ss_pred HHHHHhhcCCCChHHHhhhhhhhhhcccCCChhHHHHHHH
Q psy9003 646 VDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVD 685 (1276)
Q Consensus 646 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 685 (1276)
++.-... +. .=++--+++|.|...|+++++|.|..
T Consensus 203 l~~ga~~--~~---~~~~g~tpl~~A~~~~~~~i~~~l~~ 237 (241)
T 1k1a_A 203 VRSGADS--SL---KNCHNDTPLMVARSRRVIDILRGKAT 237 (241)
T ss_dssp HHTTCCT--TC---CCTTSCCTTTTCSSHHHHHHHTC---
T ss_pred HhcCCCC--CC---cCCCCCCHHHHHHhcCcHHHHhhhcc
Confidence 8631110 00 01223457888888888888887764
|
| >1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D | Back alignment and structure |
|---|
Probab=99.31 E-value=1.4e-12 Score=138.97 Aligned_cols=204 Identities=11% Similarity=-0.107 Sum_probs=121.5
Q ss_pred hhhhhcccccCCCHHHHHHHhhhhhccCCCCcccchhhhhccccccccCCChhhhHHhhhhhccccCCCChhhHHHHH--
Q psy9003 303 LVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLV-- 380 (1276)
Q Consensus 303 ~~~~~~~a~~~gsi~~l~~Lv~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~ie~~~yLi~~~h~~~~~~~~e~~~~~~-- 380 (1276)
+.|++|.|+..|+++++++|++..-.++.. +. ...|+.+.|+..|+++++++|+......+.......+....
T Consensus 45 g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~--~~---~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~ 119 (282)
T 1oy3_D 45 GQTALHLAAILGEASTVEKLYAAGAGVLVA--ER---GGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDC 119 (282)
T ss_dssp SCCHHHHHHHHTCHHHHHHHHHTTCCSSCC--CT---TSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC-----------
T ss_pred CCCHHHHHHHcCCHHHHHHHHHcCCCCCCC--CC---CCCCHHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhccccc
Confidence 445567788899999999999875444322 21 23577788899999999999998654433211111111100
Q ss_pred ------hhhcccccCCChhHHHHHhhhcccccCCCChhhhhcccccchhccccCCHhHHHhhcccccccccCCChhhHHH
Q psy9003 381 ------DECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKY 454 (1276)
Q Consensus 381 ------~~~~~a~~~~~id~vkyLi~~~h~~~~~~~~~~~~~~vt~lh~a~~~~~~~~~~yli~~~~~~~~~~~~e~l~~ 454 (1276)
+....+...+....+..+......+.-..+..+. ||||.|+..|+.++|++|+..+.-.....+..
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~----t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~---- 191 (282)
T 1oy3_D 120 TPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGH----TPLHVAVIHKDAEMVRLLRDAGADLNKPEPTC---- 191 (282)
T ss_dssp ------------------------CCCGGGGTTCCCTTSC----CHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTT----
T ss_pred CcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCc----CHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCC----
Confidence 0000001112222222233333444555666777 99999999999999999987542221111100
Q ss_pred HHHHHhHhccCCChhhHHHhhhhhcccccCCChhhhhhhhhhhhhhccCCCHHHHHHHhhhhcccccCCCHHHHHHHHhh
Q psy9003 455 LVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDE 534 (1276)
Q Consensus 455 l~~~~~~~~~~~~~~~~~~~v~~~~~a~~~~~~e~~~~lv~~~~~~~~~~~~~~~~~~~t~~~~a~~~g~~e~~~~lv~~ 534 (1276)
. .|..|.|..+|..|.+++|++.+.++|.+.. ...|+.+.|+..|+.+++++|++.
T Consensus 192 --------------g-----~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~-----~g~tpL~~A~~~~~~~~v~~Ll~~ 247 (282)
T 1oy3_D 192 --------------G-----RTPLHLAVEAQAASVLELLLKAGADPTARMY-----GGRTPLGSALLRPNPILARLLRAH 247 (282)
T ss_dssp --------------C-----CCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT-----TSCCHHHHHHTSSCHHHHHHHHHT
T ss_pred --------------C-----cCHHHHHHHcCCHHHHHHHHHcCCCCccccc-----CCCCHHHHHHHcCCcHHHHHHHHc
Confidence 1 4667777777788888888877777776553 345777788888888888888888
Q ss_pred hhhcCCCCC
Q psy9003 535 CHKAGLFGT 543 (1276)
Q Consensus 535 ~~~~~~~~t 543 (1276)
+++++..+.
T Consensus 248 ga~~~~~~~ 256 (282)
T 1oy3_D 248 GAPEPEDGG 256 (282)
T ss_dssp TCCCCCCC-
T ss_pred CCCcCcCCC
Confidence 887774444
|
| >2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A | Back alignment and structure |
|---|
Probab=99.29 E-value=2.1e-12 Score=133.78 Aligned_cols=206 Identities=15% Similarity=-0.005 Sum_probs=136.3
Q ss_pred cccCCChhHHHHHhhhcccccCCCChhhhhcccccchhccccCCHhHHHhhcccccccccCCChhhHHHHHHHHhHhccC
Q psy9003 386 AGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLF 465 (1276)
Q Consensus 386 a~~~~~id~vkyLi~~~h~~~~~~~~~~~~~~vt~lh~a~~~~~~~~~~yli~~~~~~~~~~~~e~l~~l~~~~~~~~~~ 465 (1276)
|...|++++|++|+...-..+...+.++. |+||.|+..|+.+++++|+..+....... ..
T Consensus 9 A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~----t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~----------------~~ 68 (228)
T 2dzn_A 9 ACMENEFFKVQELLHSKPSLLLQKDQDGR----IPLHWSVSFQAHEITSFLLSKMENVNLDD----------------YP 68 (228)
T ss_dssp HHHTTCHHHHHHHHHHCGGGTTCCCTTSC----CHHHHHHHTTCHHHHHHHHHTCTTCCGGG----------------CC
T ss_pred HHHhCCHHHHHHHHhcCccccccCCCCCC----CHHHHHHHcCCHHHHHHHHhccccccccc----------------cC
Confidence 33457777777777665555555666777 88888888888888888887653221111 00
Q ss_pred CChhhHHHhhhhhcccccCCChhhhhhhhhhh--hhhccCCCHHHHHHHhhhhcccccCCCHHHHHHHHhhhhhcCCCCC
Q psy9003 466 GTPEQLKYLVDECHKAGLFGTPEQLKYLVDEC--HKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGT 543 (1276)
Q Consensus 466 ~~~~~~~~~v~~~~~a~~~~~~e~~~~lv~~~--~~~~~~~~~~~~~~~~t~~~~a~~~g~~e~~~~lv~~~~~~~~~~t 543 (1276)
+... .|..|.|...|+.|.+++|++.. .+++.... ...|+.+.|+..|+++++++|++.+.+++..+.
T Consensus 69 ~~~g-----~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~-----~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~ 138 (228)
T 2dzn_A 69 DDSG-----WTPFHIACSVGNLEVVKSLYDRPLKPDLNKITN-----QGVTCLHLAVGKKWFEVSQFLIENGASVRIKDK 138 (228)
T ss_dssp CTTS-----CCHHHHHHHHCCHHHHHHHHSSSSCCCTTCCCT-----TCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCT
T ss_pred CCCC-----CCHHHHHHHcCCHHHHHHHHhCCCCcccccCCc-----CCCCHHHHHHHcCCHhHHHHHHHcCCCccccCC
Confidence 1111 46667777777788888887776 44444332 246777888888889999999888877775544
Q ss_pred cchhhhhhhhhhccccCCCHHHHHHHHHhh-hhccCCCChhhhhhhhhhhcccccCCCHHHHHHHH-hhhhhccCCCChh
Q psy9003 544 PEQLKYLVDECHKAGLFGTPEQLKYLVDEC-HKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLV-DECHKAGLFGTPE 621 (1276)
Q Consensus 544 ~~~l~~~~~~~~~~~~~~~~e~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~-~~~~~~~~~~~~~ 621 (1276)
+.-|..+.|...|+++.+++|++.+ +++|...... -|..+-|...|+.+.+++|+ ..+++++.+-..-
T Consensus 139 -----~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~d~~g-----~t~L~~A~~~~~~~~v~~Ll~~~ga~~~~~~~~g 208 (228)
T 2dzn_A 139 -----FNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQG-----WTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKG 208 (228)
T ss_dssp -----TSCCHHHHHHHTTCHHHHHHHHTTTCCCSCCCCTTS-----CCHHHHHHHTTCHHHHHHHHHHHCCCSCCBCTTS
T ss_pred -----CCCCHHHHHHHcCCHHHHHHHHhcCcccccCcCCCC-----CCHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCC
Confidence 4455566677888889999998888 7777332222 34555555788889999998 7788877654433
Q ss_pred hhhhhHHHhhhccCC
Q psy9003 622 QLKYLVDECHKAGLF 636 (1276)
Q Consensus 622 ~~~~~~~~~~~~~~~ 636 (1276)
-++.+-|...
T Consensus 209 -----~t~l~~A~~~ 218 (228)
T 2dzn_A 209 -----AKAEDVALNE 218 (228)
T ss_dssp -----CBGGGGCSST
T ss_pred -----CcHHHHHHHH
Confidence 3455555443
|
| >3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.27 E-value=3.3e-12 Score=132.19 Aligned_cols=228 Identities=15% Similarity=0.060 Sum_probs=120.1
Q ss_pred chhhhhhcccccCCCHHHHHHHhhhhhccCCCCcccchhhhhccccccccCCChhhhHHhhhhhccccCC--CChhhHHH
Q psy9003 301 KYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLF--GTPEQLKY 378 (1276)
Q Consensus 301 t~~~~~~~~a~~~gsi~~l~~Lv~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~ie~~~yLi~~~h~~~~~--~~~e~~~~ 378 (1276)
....+..+.|+..|+++.+++|++..-. ++..+ +...|..+.|+..|++|+|++|++.....+.. .......
T Consensus 7 ~~~~~~l~~A~~~g~~~~~~~Ll~~g~~--~~~~~---~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L- 80 (240)
T 3eu9_A 7 DYSTWDIVKATQYGIYERCRELVEAGYD--VRQPD---KENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPL- 80 (240)
T ss_dssp CGGGCCHHHHHHTTCHHHHHHHHHTTCC--TTCCC---TTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHH-
T ss_pred cccchHHHHHHHcCChHHHHHHHHcCCC--cCCCC---CCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChh-
Confidence 4567888888888888888888886533 33222 12345666777788888888887765543321 1112111
Q ss_pred HHhhhcccccCCChhHHHHHhhhcccccCCCChhhhhcccccchhccccCCHhHHHhhcccccccccCCChhhHHHHHHH
Q psy9003 379 LVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDE 458 (1276)
Q Consensus 379 ~~~~~~~a~~~~~id~vkyLi~~~h~~~~~~~~~~~~~~vt~lh~a~~~~~~~~~~yli~~~~~~~~~~~~e~l~~l~~~ 458 (1276)
+.|...|+++++++|+.. ..++...+..+. |+||.|+..|+.+++++|+..+...
T Consensus 81 -----~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~----t~l~~A~~~~~~~~~~~Ll~~~~~~--------------- 135 (240)
T 3eu9_A 81 -----HWATRQGHLSMVVQLMKY-GADPSLIDGEGC----SCIHLAAQFGHTSIVAYLIAKGQDV--------------- 135 (240)
T ss_dssp -----HHHHHHTCHHHHHHHHHT-TCCTTCCCTTSC----CHHHHHHHTTCHHHHHHHHHTTCCT---------------
T ss_pred -----HHHHHcCCHHHHHHHHHc-CCCCcccCCCCC----CHHHHHHHcCHHHHHHHHHhcCCCc---------------
Confidence 222224677777777743 344444555565 7777777777777777776542211
Q ss_pred HhHhccCCChhhHHHhhhhhcccccCCC-hhhhhhhhhhhhhhccCCCHHHHHHHhhhhcccccCCCHHHHHHHHhhhhh
Q psy9003 459 CHKAGLFGTPEQLKYLVDECHKAGLFGT-PEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHK 537 (1276)
Q Consensus 459 ~~~~~~~~~~~~~~~~v~~~~~a~~~~~-~e~~~~lv~~~~~~~~~~~~~~~~~~~t~~~~a~~~g~~e~~~~lv~~~~~ 537 (1276)
+..+... .|..|.|...+. .+.+++|.....+++..... ...|+.+.|+..|+++++++|++.+++
T Consensus 136 ----~~~~~~g-----~t~l~~a~~~~~~~~~~~~L~~~~~~~~~~~~~----~g~t~L~~A~~~~~~~~v~~Ll~~g~~ 202 (240)
T 3eu9_A 136 ----DMMDQNG-----MTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKY----HKNTALHWAVLAGNTTVISLLLEAGAN 202 (240)
T ss_dssp ----TCCCTTS-----CCHHHHHHHHCCSSTTHHHHHHTTCCTTCCCTT----TCCCHHHHHHHHTCHHHHHHHHHHTCC
T ss_pred ----cccCCCC-----CcHHHHHHHhCChHHHHHHHHhcCCCcchhhcc----CCCcHHHHHHHcCCHHHHHHHHHcCCC
Confidence 1001111 244444443332 45555555555555433220 113455555555555555555555555
Q ss_pred cCCCCCcchhhhhhhhhhccccCCCHHHHHHHHHhhhhcc
Q psy9003 538 AGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAG 577 (1276)
Q Consensus 538 ~~~~~t~~~l~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~ 577 (1276)
++..+. ..-|..+.|...|+.+.+++|.+.+++.+
T Consensus 203 ~~~~~~-----~g~t~l~~A~~~~~~~~v~~L~~~~~~~~ 237 (240)
T 3eu9_A 203 VDAQNI-----KGESALDLAKQRKNVWMINHLQEARQAKG 237 (240)
T ss_dssp TTCBCT-----TSCBHHHHHHHTTCHHHHHHHHHHC----
T ss_pred CCCcCC-----CCCCHHHHHHHcCcHHHHHHHHHhhhccC
Confidence 443332 22233344445555555555555555543
|
| >2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A | Back alignment and structure |
|---|
Probab=99.26 E-value=4.3e-12 Score=131.49 Aligned_cols=191 Identities=16% Similarity=-0.007 Sum_probs=124.1
Q ss_pred ccccccCCChhhhHHhhhhhccccC--CCChhhHHHHHhhhcccccCCChhHHHHHhhhcc-cccCC-CChhhhhccccc
Q psy9003 345 CHKAGLFGTPEQLKYLVDECHKAGL--FGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECH-KAGLF-GTPEQLKYLVDE 420 (1276)
Q Consensus 345 ~~~a~~~g~ie~~~yLi~~~h~~~~--~~~~e~~~~~~~~~~~a~~~~~id~vkyLi~~~h-~~~~~-~~~~~~~~~vt~ 420 (1276)
.+.|+..|++++|++|++..-.+.. +....... +.|+..|++|++++|+...- .++.. .+..+. ||
T Consensus 6 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L------~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~----t~ 75 (228)
T 2dzn_A 6 LHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPL------HWSVSFQAHEITSFLLSKMENVNLDDYPDDSGW----TP 75 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHCGGGTTCCCTTSCCHH------HHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSC----CH
T ss_pred HHHHHHhCCHHHHHHHHhcCccccccCCCCCCCHH------HHHHHcCCHHHHHHHHhccccccccccCCCCCC----CH
Confidence 3445555555555555554432221 11122122 22223467777777776542 22222 455666 99
Q ss_pred chhccccCCHhHHHhhcccccccc-cCCChhhHHHHHHHHhHhccCCChhhHHHhhhhhcccccCCChhhhhhhhhhhhh
Q psy9003 421 CHKAGLFGTPEQLKYLVDECHKAG-LFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHK 499 (1276)
Q Consensus 421 lh~a~~~~~~~~~~yli~~~~~~~-~~~~~e~l~~l~~~~~~~~~~~~~~~~~~~v~~~~~a~~~~~~e~~~~lv~~~~~ 499 (1276)
||.|+..|+.+++++|+..+..+. ...+. .. .|..|.|...|..|.+++|++...+
T Consensus 76 L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~------------------~g-----~t~L~~A~~~~~~~~~~~Ll~~g~~ 132 (228)
T 2dzn_A 76 FHIACSVGNLEVVKSLYDRPLKPDLNKITN------------------QG-----VTCLHLAVGKKWFEVSQFLIENGAS 132 (228)
T ss_dssp HHHHHHHCCHHHHHHHHSSSSCCCTTCCCT------------------TC-----CCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred HHHHHHcCCHHHHHHHHhCCCCcccccCCc------------------CC-----CCHHHHHHHcCCHhHHHHHHHcCCC
Confidence 999998899999999887752221 11111 11 4667777788888888888888777
Q ss_pred hccCCCHHHHHHHhhhhcccccCCCHHHHHHHHhhh-hhcCCCCCcchhhhhhhhhhccccCCCHHHHHHHH-Hhhhhcc
Q psy9003 500 AGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDEC-HKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLV-DECHKAG 577 (1276)
Q Consensus 500 ~~~~~~~~~~~~~~t~~~~a~~~g~~e~~~~lv~~~-~~~~~~~t~~~l~~~~~~~~~~~~~~~~e~~~~l~-~~~~~~~ 577 (1276)
++.... ...|+.+.|+..|+.+++++|++.+ .++|..+. ..-|..+.|...|+.+.+++|+ +.+++++
T Consensus 133 ~~~~~~-----~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~d~-----~g~t~L~~A~~~~~~~~v~~Ll~~~ga~~~ 202 (228)
T 2dzn_A 133 VRIKDK-----FNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDK-----QGWTPLFHALAEGHGDAAVLLVEKYGAEYD 202 (228)
T ss_dssp SCCCCT-----TSCCHHHHHHHTTCHHHHHHHHTTTCCCSCCCCT-----TSCCHHHHHHHTTCHHHHHHHHHHHCCCSC
T ss_pred ccccCC-----CCCCHHHHHHHcCCHHHHHHHHhcCcccccCcCC-----CCCCHHHHHHHcCCHHHHHHHHHhcCCCCC
Confidence 776554 4568888899999999999999988 77775554 3445566667899999999999 8888888
Q ss_pred C
Q psy9003 578 L 578 (1276)
Q Consensus 578 ~ 578 (1276)
.
T Consensus 203 ~ 203 (228)
T 2dzn_A 203 L 203 (228)
T ss_dssp C
T ss_pred c
Confidence 3
|
| >3faw_A Reticulocyte binding protein; TIM barrel, beta barrel, hydrolase, cell WALL, peptidoglycan-anchor, secreted; 2.10A {Streptococcus agalactiae COH1} PDB: 3fax_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=1.3e-11 Score=155.90 Aligned_cols=94 Identities=19% Similarity=0.185 Sum_probs=72.8
Q ss_pred hccceEecCC-cEEEEEEccCCceEEEEe-eccCCCcc-------e------EEEEEcc---Ccc--ccceEEEEEecCC
Q psy9003 64 KYGIHVQADN-SVRCFEWAPSAQQLYLTG-NVSLTPWS-------I------MEEASLS---SIK--LIQSIQYILTGVF 123 (1276)
Q Consensus 64 ~fGah~~~~g-g~~f~~wAP~A~~v~l~g-dfn~~~w~-------m------~~~~~~~---~~~--~g~~yky~i~~~~ 123 (1276)
-|||+...+| ||+|++|||+|++|.|++ |+ ++|. | ||+++|+ +++ .|+.|+|||...+
T Consensus 134 ~lGa~~~~~g~~v~F~vwAP~A~~V~L~l~d~--~~~~~~~~~~~m~~~~~gvW~~~v~~~~G~~~~~g~~Y~yrv~~~~ 211 (877)
T 3faw_A 134 NLGAVLNQDGSKVEASLWSPSADSVTMIIYDK--DNQNRVVATTPLVKNNKGVWQTILDTKLGIKNYTGYYYLYEIKRGK 211 (877)
T ss_dssp CCEEEECTTSSCEEEEEECTTCSEEEEEEEET--TEEEEEEEEEECEECTTSEEEEEECGGGTCSCCTTCEEEEEEEETT
T ss_pred CCCCEEeCCCCEEEEEEECCCCCEEEEEEEeC--CCCccceeeeccccCCCCEEEEEECCCCCCccCCCeEEEEEEeeCC
Confidence 4899998877 599999999999999998 88 5552 5 9999994 222 5789999997543
Q ss_pred C---------------CC--------Cccccccc--------------------------ccccccC-------------
Q psy9003 124 G---------------TP--------EQLKYLVD--------------------------ECHKAGL------------- 141 (1276)
Q Consensus 124 g---------------rp--------~~as~~~d--------------------------e~h~gs~------------- 141 (1276)
. .| ...|+|+| |+|.++|
T Consensus 212 ~~~~~~DPYA~~~~~~~~~~~~~~~~~~~s~vvd~~~~~~~~~~~~~~p~~~~~~~~vIYElhvr~ft~~~~~~~~~~~~ 291 (877)
T 3faw_A 212 DKVKILDPYAKSLAEWDSNTVNDDIKTAKAAFVNPSQLGPQNLSFAKIANFKGRQDAVIYEAHVRDFTSDQSLDGKLKNQ 291 (877)
T ss_dssp EEEEECCTTCSCBCCCBGGGCCSSCCSCCEECCCGGGSSCTTCCCCCCTTCCSGGGCEEEEECTTGGGCCGGGTTTCSSC
T ss_pred ceeEecCccceeccccCcccccccccCCceEEecccccCCCccccccCCCCCCccccEEEEEEchHhcCCCCCCccccCC
Confidence 2 11 12355554 9999985
Q ss_pred -CChHHHHHHHHHHHHhcCc
Q psy9003 142 -FGTPEQLKYLVDECHKAGL 160 (1276)
Q Consensus 142 -~~y~e~a~~li~y~~~~~y 160 (1276)
-+|+.|++.| ||+|++|+
T Consensus 292 ~Gt~~gl~~~L-~yLk~LGv 310 (877)
T 3faw_A 292 LGTFAAFSEKL-DYLQKLGV 310 (877)
T ss_dssp TTSHHHHGGGH-HHHHHHTC
T ss_pred CCCHHHHHHHH-HHHHHcCC
Confidence 5799999986 99999887
|
| >1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 | Back alignment and structure |
|---|
Probab=99.21 E-value=1.1e-11 Score=133.96 Aligned_cols=220 Identities=16% Similarity=0.041 Sum_probs=133.7
Q ss_pred hhhhhhcccccCCCHHHHHHHhhhhhccCCCCcccchhhhhccccccccCCChhhhHHhhhhhccccC-CCChhhHHHHH
Q psy9003 302 YLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGL-FGTPEQLKYLV 380 (1276)
Q Consensus 302 ~~~~~~~~a~~~gsi~~l~~Lv~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~ie~~~yLi~~~h~~~~-~~~~e~~~~~~ 380 (1276)
...|..+.|+..|+++.+++|++..-.++ ..+. ...|..|.|+..|++|+|++|++....++. +....+..
T Consensus 39 ~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~--~~~~---~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL--- 110 (299)
T 1s70_B 39 DDGAVFLAACSSGDTEEVLRLLERGADIN--YANV---DGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPL--- 110 (299)
T ss_dssp CHHHHHHHHHHHTCHHHHHHHHHHCCCTT--CBCT---TCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHH---
T ss_pred CCccHHHHHHHcCCHHHHHHHHHcCCCCc--ccCC---CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHH---
Confidence 34566788888999999999998754333 3221 235777889999999999999986544332 22222222
Q ss_pred hhhcccccCCChhHHHHHhhhcccccCCCChhhhhcccccchhccccCCHhHHHhhcccccccccCCChhhHHHHHHHHh
Q psy9003 381 DECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECH 460 (1276)
Q Consensus 381 ~~~~~a~~~~~id~vkyLi~~~h~~~~~~~~~~~~~~vt~lh~a~~~~~~~~~~yli~~~~~~~~~~~~e~l~~l~~~~~ 460 (1276)
+-|+..|++|+|++|+.. ..++-..+.++. ||||.|+..++.+++++++.......-..+.+....+...+
T Consensus 111 ---~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~----t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~- 181 (299)
T 1s70_B 111 ---HAAASCGYLDIAEYLISQ-GAHVGAVNSEGD----TPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDA- 181 (299)
T ss_dssp ---HHHHHHTCHHHHHHHHHT-TCCTTCCCTTSC----CHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHH-
T ss_pred ---HHHHHcCCHHHHHHHHhC-CCCCCCcCCCCC----CHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHH-
Confidence 233345899999999986 345556677777 99999999999999999987655433222211111111111
Q ss_pred HhccCCChhhHHHhhhhhcccccCCChhhhhhhhhhhhhhccCCCHHHHHHHhhhhcccccCCCHHHHHHHHhhhhhcCC
Q psy9003 461 KAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGL 540 (1276)
Q Consensus 461 ~~~~~~~~~~~~~~v~~~~~a~~~~~~e~~~~lv~~~~~~~~~~~~~~~~~~~t~~~~a~~~g~~e~~~~lv~~~~~~~~ 540 (1276)
.. ++.......... -....|+.+.|+..|+++++++|++.++++|.
T Consensus 182 -----------~~-------------------~l~~~~~~~~~~----~~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~ 227 (299)
T 1s70_B 182 -----------RQ-------------------WLNSGHINDVRH----AKSGGTALHVAAAKGYTEVLKLLIQARYDVNI 227 (299)
T ss_dssp -----------HH-------------------HHHHTCCCCCCC----TTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTC
T ss_pred -----------HH-------------------HHhccCcchhhh----cCCCCCHHHHHHHCCcHHHHHHHHHcCCCCCC
Confidence 11 111111000000 00124566666667777777777766666664
Q ss_pred CCCcchhhhhhhhhhccccCCCHHHHHHHHHhhhhcc
Q psy9003 541 FGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAG 577 (1276)
Q Consensus 541 ~~t~~~l~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~ 577 (1276)
.+. ..-|..+.|...|+.|.+++|++.+++++
T Consensus 228 ~d~-----~g~tpL~~A~~~~~~~~v~~Ll~~gad~~ 259 (299)
T 1s70_B 228 KDY-----DGWTPLHAAAHWGKEEACRILVENLCDME 259 (299)
T ss_dssp CCT-----TCCCHHHHHHHTTCHHHHHHHHHTTCCTT
T ss_pred cCC-----CCCcHHHHHHhcCCHHHHHHHHHcCCCCC
Confidence 443 33344455556677777777777777666
|
| >4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.19 E-value=4.5e-12 Score=138.51 Aligned_cols=224 Identities=13% Similarity=0.022 Sum_probs=131.5
Q ss_pred ccccccccCCChhhhHHhhhhhcccc------CCCChhhHHHHHhhhcccccCCCh-hHHHHHhhhcccccCCCChhhhh
Q psy9003 343 DECHKAGLFGTPEQLKYLVDECHKAG------LFGTPEQLKYLVDECHKAGLFGTP-EQLKYLVDECHKAGLFGTPEQLK 415 (1276)
Q Consensus 343 ~~~~~a~~~g~ie~~~yLi~~~h~~~------~~~~~e~~~~~~~~~~~a~~~~~i-d~vkyLi~~~h~~~~~~~~~~~~ 415 (1276)
++.++|+..|++|+|++|++....+. ++..+.. ..+..+.+...++. +++++|+.. .+++-..+.+|.
T Consensus 13 ~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~~~~---~~t~L~~a~~~~~~~~~v~~Ll~~-Gadvn~~d~~G~- 87 (269)
T 4b93_B 13 EKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPE---FCHPLCQCPKCAPAQKRLAKVPAS-GLGVNVTSQDGS- 87 (269)
T ss_dssp HHHHHHHHTTCHHHHHHHHTCC-------------------------------------------C-CCCTTCCCTTSC-
T ss_pred hHHHHHHHcCCHHHHHHHHHCCCcccccccccccccCcc---CCCHHHHHHHhCCHHHHHHHHHHC-CCCCCCcCCCCC-
Confidence 34455666666777777765544322 1111110 11222223333443 467777753 345556677788
Q ss_pred cccccchhccccCCHhHHHhhcccccccccCCChhhHHHHHHHHhHhccCCChhhHHHhhhhhcccccCCChhhhhhhhh
Q psy9003 416 YLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVD 495 (1276)
Q Consensus 416 ~~vt~lh~a~~~~~~~~~~yli~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~~~~~~~v~~~~~a~~~~~~e~~~~lv~ 495 (1276)
||||.|+..|+.++|++|+..+... ...+ ... .|..|.|...++.+.+++|++
T Consensus 88 ---TpLh~A~~~g~~~~v~~Ll~~~a~~-~~~~------------------~~g-----~t~l~~a~~~~~~~~~~~Ll~ 140 (269)
T 4b93_B 88 ---SPLHVAALHGRADLIPLLLKHGANA-GARN------------------ADQ-----AVPLHLACQQGHFQVVKCLLD 140 (269)
T ss_dssp ---CHHHHHHHTTCTTHHHHHHHTTCCT-TCCC------------------TTC-----CCHHHHHHHHTCHHHHHHHHH
T ss_pred ---CHHHHHHHcCcHHHHHHHHhcCCCc-CccC------------------CCC-----CCccccccccChHHHHHHHHH
Confidence 9999999999999999999754321 1111 111 356677777888888889988
Q ss_pred hhhhhccCCCHHHHHHHhhhhcccccCCCHHHHHHHHhhhhhcCCCCCcchhhhhhhhhhccccCCCHHHHHHHHHhhhh
Q psy9003 496 ECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHK 575 (1276)
Q Consensus 496 ~~~~~~~~~~~~~~~~~~t~~~~a~~~g~~e~~~~lv~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~e~~~~l~~~~~~ 575 (1276)
...++|.... ...|+.+.|+..|+++++++|++.++++|..+. ...|..+.|...|++|.+++|++.+++
T Consensus 141 ~g~~~n~~d~-----~g~TpL~~A~~~g~~~~v~~Ll~~gadvn~~~~-----~g~t~Lh~A~~~g~~~~v~~Ll~~Gad 210 (269)
T 4b93_B 141 SNAKPNKKDL-----SGNTPLIYACSGGHHELVALLLQHGASINASNN-----KGNTALHEAVIEKHVFVVELLLLHGAS 210 (269)
T ss_dssp TTCCSCCCCT-----TCCCHHHHHHHTTCGGGHHHHHHTTCCTTCBCT-----TSCBHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred CCCCCCCCCC-----CCCCHHHHHHHCCCHHHHHHHHHCCCCCCcccc-----CCCcHHHHHHHcCCHHHHHHHHHCCCC
Confidence 8888887654 457889999999999999999999888885554 455666777799999999999999998
Q ss_pred ccCCCChhhhhhhhhhhcccccCCC-HHHHHHHHhhhhh
Q psy9003 576 AGLFGTPEQLKYLVDECHKAGLFGT-PEQLKYLVDECHK 613 (1276)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~~~~~~~-~e~~~~l~~~~~~ 613 (1276)
+|.....- .|..+-|..+|. +|-|++|...++.
T Consensus 211 ~~~~d~~G-----~TpL~~A~~~~~i~~lL~~l~~~~~~ 244 (269)
T 4b93_B 211 VQVLNKRQ-----RTAVDCAEQNSKIMELLQVVPSCVAS 244 (269)
T ss_dssp SCCCCTTS-----CCSGGGSCTTCHHHHHTTC-------
T ss_pred CCCcCCCC-----CCHHHHHHhCCcHHHHHHHHHHhchh
Confidence 88432222 345555556665 3444555444433
|
| >3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=99.18 E-value=1.6e-11 Score=125.13 Aligned_cols=190 Identities=15% Similarity=0.032 Sum_probs=125.9
Q ss_pred hhhhhhcccccCCCHHHHHHHhhhhhccCCCCcccchhhhhccccccccCCChhhhHHhhhhhccccC-CCChhhHHHHH
Q psy9003 302 YLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGL-FGTPEQLKYLV 380 (1276)
Q Consensus 302 ~~~~~~~~a~~~gsi~~l~~Lv~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~ie~~~yLi~~~h~~~~-~~~~e~~~~~~ 380 (1276)
...|..+.|+.+|+++.+++|+..... .++..+. ...|..+.|+..|++|+|++|++.....+. +.......
T Consensus 4 ~~~~~L~~A~~~g~~~~v~~ll~~~~~-~~~~~~~---~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l--- 76 (201)
T 3hra_A 4 YEVGALLEAANQRDTKKVKEILQDTTY-QVDEVDT---EGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPY--- 76 (201)
T ss_dssp CCTTHHHHHHHTTCHHHHHHHHTCTTC-CTTCCCT---TSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHH---
T ss_pred ccccHHHHHHHhccHHHHHHHHHcCCC-CCCCCCC---CCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHH---
Confidence 345666778888888888888876542 2222221 224666778888888999998876543332 22222222
Q ss_pred hhhcccccCCChhHHHHHhhhcccccCCCChhhhhcccccchhccccCCHhHHHhhcccccccccCCChhhHHHHHHHHh
Q psy9003 381 DECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECH 460 (1276)
Q Consensus 381 ~~~~~a~~~~~id~vkyLi~~~h~~~~~~~~~~~~~~vt~lh~a~~~~~~~~~~yli~~~~~~~~~~~~e~l~~l~~~~~ 460 (1276)
+.|...|+.+++++|+.....++-..+..+. ||||.|+..|+.+++++|+..+.+.....+...
T Consensus 77 ---~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~----t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g--------- 140 (201)
T 3hra_A 77 ---LYAGAQGRTEILAYMLKHATPDLNKHNRYGG----NALIPAAEKGHIDNVKLLLEDGREDIDFQNDFG--------- 140 (201)
T ss_dssp ---HHHHHTTCHHHHHHHHHHSCCCTTCCCTTSC----CSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTS---------
T ss_pred ---HHHHHcCCHHHHHHHHhccCcccccccCCCC----cHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCC---------
Confidence 2233368899999999877777777777787 999999999999999999887644333333222
Q ss_pred HhccCCChhhHHHhhhhhcccccCCC-----hhhhhhhhhhhhhhccCCCHHHHHHHhhhhcccccCCCHHHHHHHHh
Q psy9003 461 KAGLFGTPEQLKYLVDECHKAGLFGT-----PEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVD 533 (1276)
Q Consensus 461 ~~~~~~~~~~~~~~v~~~~~a~~~~~-----~e~~~~lv~~~~~~~~~~~~~~~~~~~t~~~~a~~~g~~e~~~~lv~ 533 (1276)
.|..|.|...++ .|.+++|++.+.+++.... ...|+.+.|...|+.|++++|++
T Consensus 141 --------------~t~L~~A~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~-----~g~t~l~~A~~~~~~~~~~~Ll~ 199 (201)
T 3hra_A 141 --------------YTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDN-----SGRTAMDYANQKGYTEISKILAQ 199 (201)
T ss_dssp --------------CCHHHHHHHSSCCSHHHHHHHHHHHHTTCCTTCCCT-----TSCCHHHHHHHHTCHHHHHHHHT
T ss_pred --------------CCHHHHHHHhccchhhHHHHHHHHHHCCCCCCccCC-----CCCCHHHHHHHcCCHhHHHHHHh
Confidence 355566665555 6777777777766665543 34567777777777888777765
|
| >2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.16 E-value=2e-11 Score=127.36 Aligned_cols=205 Identities=13% Similarity=-0.025 Sum_probs=144.6
Q ss_pred ccchhccccCCHhHHHhhcccccccccCCChhhHHHHHHHHhHhccCCChhhHHHhhhhhcccccCCChhhhhhhhhhhh
Q psy9003 419 DECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECH 498 (1276)
Q Consensus 419 t~lh~a~~~~~~~~~~yli~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~~~~~~~v~~~~~a~~~~~~e~~~~lv~~~~ 498 (1276)
||||.|+..|+.++|++|+....+.....+... .|..|.|...|+.|.+++|++...
T Consensus 5 t~L~~A~~~g~~~~v~~Ll~~~g~~~~~~~~~g-----------------------~t~L~~A~~~g~~~~v~~Ll~~~~ 61 (232)
T 2rfa_A 5 SPLLLAAKENDVQALSKLLKFEGCEVHQRGAMG-----------------------ETALHIAALYDNLEAAMVLMEAAP 61 (232)
T ss_dssp CHHHHHHHTTCHHHHHHHHTTTCSCTTCCCTTS-----------------------CCHHHHHHHTTCHHHHHHHHHHCG
T ss_pred CHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCC-----------------------CCHHHHHHHcCCHHHHHHHHHcCc
Confidence 999999999999999999987544443333222 577888888899999999999887
Q ss_pred hhccCCCHHHHHHHhhhhcccccCCCHHHHHHHHhhhhhcCCCCCcch--------hhhhhhhhhccccCCCHHHHHHHH
Q psy9003 499 KAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQ--------LKYLVDECHKAGLFGTPEQLKYLV 570 (1276)
Q Consensus 499 ~~~~~~~~~~~~~~~t~~~~a~~~g~~e~~~~lv~~~~~~~~~~t~~~--------l~~~~~~~~~~~~~~~~e~~~~l~ 570 (1276)
++........-....|+.+.|+..|+++++++|++.+.+++..+.... -.+.-|..+.|...|++|.+++|+
T Consensus 62 ~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll 141 (232)
T 2rfa_A 62 ELVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLI 141 (232)
T ss_dssp GGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHH
T ss_pred hhccccccccCCCCcCHHHHHHHcCCHHHHHHHHhCCCCCCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHH
Confidence 763221100111347899999999999999999999988885443211 124556677788999999999999
Q ss_pred HhhhhccCCCChhhhhhhhhhhcccccCCCHHHH----HHHHhhhhhccCCCC-hhhhhhhHHHhhhccCCCCHHHHHHH
Q psy9003 571 DECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQL----KYLVDECHKAGLFGT-PEQLKYLVDECHKAGLFGTPEQLKYL 645 (1276)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~----~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 645 (1276)
+.++++|.....- .|..+-|...|+.+.+ ++|+..+++.+.+.- ....+.-.++++-|...|++|.+++|
T Consensus 142 ~~ga~~~~~d~~g-----~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~A~~~g~~~~v~~L 216 (232)
T 2rfa_A 142 EHGADIRAQDSLG-----NTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHL 216 (232)
T ss_dssp HTTCCTTCCCTTS-----CCHHHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred HCCCCCCCCCCCC-----CCHHHHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCHHHHHHHcCCHHHHHHH
Confidence 9998888433222 4666666689999988 888888887642110 01112225566666667888888888
Q ss_pred HHHHHh
Q psy9003 646 VDECHK 651 (1276)
Q Consensus 646 ~~~~~~ 651 (1276)
++.-.+
T Consensus 217 l~~g~~ 222 (232)
T 2rfa_A 217 MQKRKH 222 (232)
T ss_dssp HHHHHH
T ss_pred HhcCcc
Confidence 875544
|
| >1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E | Back alignment and structure |
|---|
Probab=99.15 E-value=1e-11 Score=130.47 Aligned_cols=196 Identities=12% Similarity=-0.028 Sum_probs=118.1
Q ss_pred ccchhccccCCHhHHHhhcccccccccCCChhhHHHHHHHHhHhccCCChhhHHHhhhhhcccccCCChhhhhhhhhhhh
Q psy9003 419 DECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECH 498 (1276)
Q Consensus 419 t~lh~a~~~~~~~~~~yli~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~~~~~~~v~~~~~a~~~~~~e~~~~lv~~~~ 498 (1276)
|+||.|+..|+.++|++|+....... ..++..+... .|..|.|...|..|.+++|++.+.
T Consensus 10 t~L~~A~~~g~~~~v~~Ll~~~~~~~---------------~~~~~~~~~g-----~t~L~~A~~~~~~~~v~~Ll~~g~ 69 (236)
T 1ikn_D 10 SFLHLAIIHEEKALTMEVIRQVKGDL---------------AFLNFQNNLQ-----QTPLHLAVITNQPEIAEALLGAGC 69 (236)
T ss_dssp CTTHHHHHTTCSSSSSCCCC-----C---------------CCCCCCCTTC-----CCHHHHHHHTTCHHHHHCCCSCCC
T ss_pred chhHHHHHcCChhHHHHHHHHhhccH---------------HHhhccCCCC-----CCHHHHHHHcCCHHHHHHHHHcCC
Confidence 78888887788888777776543321 0111111222 466777777777777777777766
Q ss_pred hhccCCCHHHHHHHhhhhcccccCCCHHHHHHHHhhhhhcCCCCCcc-hhhhhhhhhhccccCCCHHHHHHHHHhhhhcc
Q psy9003 499 KAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPE-QLKYLVDECHKAGLFGTPEQLKYLVDECHKAG 577 (1276)
Q Consensus 499 ~~~~~~~~~~~~~~~t~~~~a~~~g~~e~~~~lv~~~~~~~~~~t~~-~l~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~ 577 (1276)
+++.... ...|+.+.|+..|+++++++|+..+.+.+.....+ .-....|..+.|...|+++.+++|++.++++|
T Consensus 70 ~~~~~~~-----~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~ 144 (236)
T 1ikn_D 70 DPELRDF-----RGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVN 144 (236)
T ss_dssp CSCCCCT-----TCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTT
T ss_pred CCCCcCC-----CCCCHHHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence 6665443 33567777777788888888877766532111111 11133455566667778888888887777777
Q ss_pred CCCC-hhhhhhhhhhhcccccCCCHHHHHHHHhhhhhccCCCChhhhhhhHHHhhhccCCCCHHHHHHHHHHH
Q psy9003 578 LFGT-PEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDEC 649 (1276)
Q Consensus 578 ~~~~-~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 649 (1276)
.... .- .|..+-|...|+++.+++|++.++++|.+-..- .++++-|...|+.|.+++|++.-
T Consensus 145 ~~~~~~g-----~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g-----~tpl~~A~~~~~~~~~~~Ll~~g 207 (236)
T 1ikn_D 145 AQEPCNG-----RTALHLAVDLQNPDLVSLLLKCGADVNRVTYQG-----YSPYQLTWGRPSTRIQQQLGQLT 207 (236)
T ss_dssp CCCTTTC-----CCHHHHHHHTTCHHHHHHHHTTTCCSCCCCTTC-----CCGGGGCTTSSCHHHHHHHHTTS
T ss_pred CCCCCCC-----CCHHHHHHHcCCHHHHHHHHHcCCCCCcccCCC-----CCHHHHHHccCchHHHHHHHHcc
Confidence 3221 11 344444557777888888887777776554333 55666666677777777776643
|
| >2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 | Back alignment and structure |
|---|
Probab=99.13 E-value=1.6e-11 Score=141.61 Aligned_cols=189 Identities=12% Similarity=-0.005 Sum_probs=114.3
Q ss_pred CChhHHHHHhhhcccccCCCChhhhhcccccchhccccCCHhHHHhhcccccccccCCChhhHHHHHHHHhHhccCCChh
Q psy9003 390 GTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPE 469 (1276)
Q Consensus 390 ~~id~vkyLi~~~h~~~~~~~~~~~~~~vt~lh~a~~~~~~~~~~yli~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~~ 469 (1276)
+++++++||+... .+.. |+||.|+..|+.++|++|+..+........++. .+
T Consensus 77 ~~~~~~~~l~~~g--------~~~~----T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~----------------~~ 128 (376)
T 2aja_A 77 NAKQLWSDAHKKG--------IKSE----VICFVAAITGCSSALDTLCLLLTSDEIVKVIQA----------------EN 128 (376)
T ss_dssp TCTTHHHHHHHHT--------CCHH----HHHHHHHHHCCHHHHHHHTTC--CCSSCC--CH----------------HH
T ss_pred CCHHHHHHHHHcC--------CCcC----CHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhcc----------------CC
Confidence 4566666666421 1223 888888888888888888876542111111110 01
Q ss_pred hHHHhhhhhcccccCCChhhhhhhhhhhhh---hccCCCHHHHHHHhhhhcccccCCCHHHHHHHHhhhhhcCCCCCcch
Q psy9003 470 QLKYLVDECHKAGLFGTPEQLKYLVDECHK---AGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQ 546 (1276)
Q Consensus 470 ~~~~~v~~~~~a~~~~~~e~~~~lv~~~~~---~~~~~~~~~~~~~~t~~~~a~~~g~~e~~~~lv~~~~~~~~~~t~~~ 546 (1276)
.|..|.|..+|+.|.+++|++.+.+ .+.+.. . .|+.+.|+..|++|++++|++.+++++.+..+
T Consensus 129 -----~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~-----~-~TpLh~Aa~~G~~eiv~~Ll~~ga~~~~~~~d-- 195 (376)
T 2aja_A 129 -----YQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAE-----N-YHAFRLAAENGHLHVLNRLCELAPTEATAMIQ-- 195 (376)
T ss_dssp -----HHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHH-----H-HHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHH--
T ss_pred -----CCHHHHHHHcCCHHHHHHHHhCCCCccccccCCC-----C-CCHHHHHHHCCCHHHHHHHHHcCCccchhccC--
Confidence 3467777777777777777776643 111111 1 67788888888888888888777665430011
Q ss_pred hhhhhhhhhccc-cCCCHHHHHHHHHhhhhccCCCChhhhhhhhhhhcccccCCCHHHHHHHHhhhhhccCCCChhhhhh
Q psy9003 547 LKYLVDECHKAG-LFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKY 625 (1276)
Q Consensus 547 l~~~~~~~~~~~-~~~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~ 625 (1276)
...-|..+.|. ..|++|.+++|++.++. .-|+.+.|...|+.|.+++|+..+++++.+-
T Consensus 196 -~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga~------------~~taL~~Aa~~g~~evv~lL~~~ga~~~~~~------- 255 (376)
T 2aja_A 196 -AENYYAFRWAAVGRGHHNVINFLLDCPVM------------LAYAEIHEFEYGEKYVNPFIARHVNRLKEMH------- 255 (376)
T ss_dssp -HHHHHHHHHHHSTTCCHHHHHHHTTSHHH------------HHHHHHCTTTTTTTTHHHHHHHHHHHHHHHH-------
T ss_pred -CCCCCHHHHHHHHCCCHHHHHHHHhCCCc------------cchHHHHHHHCCCHHHHHHHHhcCccccccc-------
Confidence 13456677777 88888888888875532 2456667778888888888888887774321
Q ss_pred hHHHhhhccCCCCHHH
Q psy9003 626 LVDECHKAGLFGTPEQ 641 (1276)
Q Consensus 626 ~~~~~~~~~~~~~~~~ 641 (1276)
.++..|...|+.+.
T Consensus 256 --~~l~~A~~~g~~~v 269 (376)
T 2aja_A 256 --DAFKLSNPDGVFDL 269 (376)
T ss_dssp --TTTTTTSSSSCCCC
T ss_pred --HHHHHHHHCCChhh
Confidence 24455555555553
|
| >3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=99.12 E-value=2.7e-11 Score=123.35 Aligned_cols=189 Identities=16% Similarity=0.072 Sum_probs=134.4
Q ss_pred cccccchhccccCCHhHHHhhcccccccccCCChhhHHHHHHHHhHhccCCChhhHHHhhhhhcccccCCChhhhhhhhh
Q psy9003 416 YLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVD 495 (1276)
Q Consensus 416 ~~vt~lh~a~~~~~~~~~~yli~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~~~~~~~v~~~~~a~~~~~~e~~~~lv~ 495 (1276)
+..|+||.|+..|+.+.|++|+....+.....+.+. .|..|.|...|+.|.+++|++
T Consensus 4 ~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g-----------------------~t~L~~A~~~~~~~~v~~Ll~ 60 (201)
T 3hra_A 4 YEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEG-----------------------NTPLNIAVHNNDIEIAKALID 60 (201)
T ss_dssp CCTTHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTS-----------------------CCHHHHHHHHTCHHHHHHHHH
T ss_pred ccccHHHHHHHhccHHHHHHHHHcCCCCCCCCCCCC-----------------------CCHHHHHHHcCCHHHHHHHHH
Confidence 445899999999999999999877655444333222 466777778888888888888
Q ss_pred hhhhhccCCCHHHHHHHhhhhcccccCCCHHHHHHHHhh-hhhcCCCCCcchhhhhhhhhhccccCCCHHHHHHHHHhh-
Q psy9003 496 ECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDE-CHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDEC- 573 (1276)
Q Consensus 496 ~~~~~~~~~~~~~~~~~~t~~~~a~~~g~~e~~~~lv~~-~~~~~~~~t~~~l~~~~~~~~~~~~~~~~e~~~~l~~~~- 573 (1276)
...+++.... ...|+.+.|+..|+++++++|+.. +.+++..+. +.-|..+.|...|+++.+++|++.+
T Consensus 61 ~g~~~~~~~~-----~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~-----~g~t~L~~A~~~~~~~~v~~Ll~~g~ 130 (201)
T 3hra_A 61 RGADINLQNS-----ISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNR-----YGGNALIPAAEKGHIDNVKLLLEDGR 130 (201)
T ss_dssp TTCCTTCCCT-----TSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCT-----TSCCSHHHHHHTTCHHHHHHHHHHCC
T ss_pred cCCCCCCCCC-----CCCCHHHHHHHcCCHHHHHHHHhccCcccccccC-----CCCcHHHHHHHcCCHHHHHHHHHcCC
Confidence 8777776543 346788888899999999999944 335554333 3445566677899999999999998
Q ss_pred hhccCCCChhhhhhhhhhhcccccCCC-----HHHHHHHHhhhhhccCCCChhhhhhhHHHhhhccCCCCHHHHHHHHH
Q psy9003 574 HKAGLFGTPEQLKYLVDECHKAGLFGT-----PEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVD 647 (1276)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 647 (1276)
+++|...... .|..+-|...|+ +|.+++|++.++++|.+-..- .++++.|...|..|.+++|++
T Consensus 131 ~~~~~~~~~g-----~t~L~~A~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~g-----~t~l~~A~~~~~~~~~~~Ll~ 199 (201)
T 3hra_A 131 EDIDFQNDFG-----YTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSG-----RTAMDYANQKGYTEISKILAQ 199 (201)
T ss_dssp CCTTCCCTTS-----CCHHHHHHHSSCCSHHHHHHHHHHHHTTCCTTCCCTTS-----CCHHHHHHHHTCHHHHHHHHT
T ss_pred CCcCCCCCCC-----CCHHHHHHHhccchhhHHHHHHHHHHCCCCCCccCCCC-----CCHHHHHHHcCCHhHHHHHHh
Confidence 7777332221 344444446666 899999999998887664443 456666666688888887763
|
| >1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E | Back alignment and structure |
|---|
Probab=99.12 E-value=1.8e-11 Score=128.60 Aligned_cols=132 Identities=11% Similarity=-0.059 Sum_probs=85.6
Q ss_pred hhhcccccCCChhhhhhhhhhhhhh------ccCCCHHHHHHHhhhhcccccCCCHHHHHHHHhhhhhcCCCCCcchhhh
Q psy9003 476 DECHKAGLFGTPEQLKYLVDECHKA------GLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKY 549 (1276)
Q Consensus 476 ~~~~~a~~~~~~e~~~~lv~~~~~~------~~~~~~~~~~~~~t~~~~a~~~g~~e~~~~lv~~~~~~~~~~t~~~l~~ 549 (1276)
|..|.|...|..+.+++|++.+... +.... ...|+.+.|+..|+++++++|++.+++++..+. ..
T Consensus 80 t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~-----~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~----~~ 150 (236)
T 1ikn_D 80 TPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNY-----NGHTCLHLASIHGYLGIVELLVSLGADVNAQEP----CN 150 (236)
T ss_dssp CHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCT-----TCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCT----TT
T ss_pred CHHHHHHHcCCHHHHHHHHhcccchhHHHHhhccCC-----CCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCC----CC
Confidence 4445555555555555555544321 11111 235778888888888888888888877774332 02
Q ss_pred hhhhhhccccCCCHHHHHHHHHhhhhccCCCChhhhhhhhhhhcccccCCCHHHHHHHHhhhhhccCCCChh
Q psy9003 550 LVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPE 621 (1276)
Q Consensus 550 ~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~~ 621 (1276)
.-|..+.|...|+++.+++|++.+++++.....- .|..+-|...|+.|.+++|++.+++........
T Consensus 151 g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g-----~tpl~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~ 217 (236)
T 1ikn_D 151 GRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQG-----YSPYQLTWGRPSTRIQQQLGQLTLENLQMLPES 217 (236)
T ss_dssp CCCHHHHHHHTTCHHHHHHHHTTTCCSCCCCTTC-----CCGGGGCTTSSCHHHHHHHHTTSCGGGSSCCCC
T ss_pred CCCHHHHHHHcCCHHHHHHHHHcCCCCCcccCCC-----CCHHHHHHccCchHHHHHHHHcchhhhhcCCcc
Confidence 3455566668888888888888888877433222 566677778888899999988888876554443
|
| >1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 | Back alignment and structure |
|---|
Probab=99.11 E-value=2.6e-11 Score=131.07 Aligned_cols=223 Identities=17% Similarity=0.070 Sum_probs=141.7
Q ss_pred ccccccccCCChhhhHHhhhhhccccC-CCChhhHHHHHhhhcccccCCChhHHHHHhhhcccccCCCChhhhhcccccc
Q psy9003 343 DECHKAGLFGTPEQLKYLVDECHKAGL-FGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDEC 421 (1276)
Q Consensus 343 ~~~~~a~~~g~ie~~~yLi~~~h~~~~-~~~~e~~~~~~~~~~~a~~~~~id~vkyLi~~~h~~~~~~~~~~~~~~vt~l 421 (1276)
+..+.|+..|++|+|++|++..-.++. +...... .+.|+..|++|+|++|+.. ..++-..+..+. |||
T Consensus 42 t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~------L~~A~~~g~~~~v~~Ll~~-ga~~~~~~~~g~----tpL 110 (299)
T 1s70_B 42 AVFLAACSSGDTEEVLRLLERGADINYANVDGLTA------LHQACIDDNVDMVKFLVEN-GANINQPDNEGW----IPL 110 (299)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHCCCTTCBCTTCCBH------HHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSC----CHH
T ss_pred cHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCH------HHHHHHcCCHHHHHHHHHC-CCCCCCCCCCCC----cHH
Confidence 456788899999999999986544332 2222222 2334446999999999984 345555677777 999
Q ss_pred hhccccCCHhHHHhhcccccccccCCChhhHHHHHHHHhHhccCCChhhHHHhhhhhcccccCCChhhhhhhhhhhhhhc
Q psy9003 422 HKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAG 501 (1276)
Q Consensus 422 h~a~~~~~~~~~~yli~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~~~~~~~v~~~~~a~~~~~~e~~~~lv~~~~~~~ 501 (1276)
|.|+..|+.++|++|+..+.... ..+.+. .|..|.|...+..+.+++|+....
T Consensus 111 ~~A~~~g~~~~v~~Ll~~g~~~~-~~~~~g-----------------------~t~l~~A~~~~~~~~~~~ll~~~~--- 163 (299)
T 1s70_B 111 HAAASCGYLDIAEYLISQGAHVG-AVNSEG-----------------------DTPLDIAEEEAMEELLQNEVNRQG--- 163 (299)
T ss_dssp HHHHHHTCHHHHHHHHHTTCCTT-CCCTTS-----------------------CCHHHHCCSHHHHHHHHHHHHHHT---
T ss_pred HHHHHcCCHHHHHHHHhCCCCCC-CcCCCC-----------------------CCHHHHHHhcchHHHHHHHHhhcC---
Confidence 99999999999999998643221 112111 345556666666666655554211
Q ss_pred cCCCHHHHHHHhhhhcccccCCCHHHHHHHHhhhhhcCCCCCcchhhhhhhhhhccccCCCHHHHHHHHHhhhhccCCCC
Q psy9003 502 LFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGT 581 (1276)
Q Consensus 502 ~~~~~~~~~~~~t~~~~a~~~g~~e~~~~lv~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~ 581 (1276)
...+... +......++.++.++.......+... .+..|..+.|...|+++.+++|++.++++|....
T Consensus 164 --~~~~~~~-------~~~~~~~~~~~~~~l~~~~~~~~~~~----~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d~ 230 (299)
T 1s70_B 164 --VDIEAAR-------KEEERIMLRDARQWLNSGHINDVRHA----KSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDY 230 (299)
T ss_dssp --CCHHHHH-------HHHHHHHHHHHHHHHHHTCCCCCCCT----TTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCT
T ss_pred --CCchhhh-------hhhhhHHHHHHHHHHhccCcchhhhc----CCCCCHHHHHHHCCcHHHHHHHHHcCCCCCCcCC
Confidence 1111000 00001112334445544433332221 2445666777799999999999999998884332
Q ss_pred hhhhhhhhhhhcccccCCCHHHHHHHHhhhhhccCCCChh
Q psy9003 582 PEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPE 621 (1276)
Q Consensus 582 ~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~~ 621 (1276)
.- .|..+-|..+|+.|.+++|++.++++|.+-..-
T Consensus 231 ~g-----~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g 265 (299)
T 1s70_B 231 DG-----WTPLHAAAHWGKEEACRILVENLCDMEAVNKVG 265 (299)
T ss_dssp TC-----CCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTS
T ss_pred CC-----CcHHHHHHhcCCHHHHHHHHHcCCCCCCcCCCC
Confidence 22 466666778999999999999999998765444
|
| >4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.08 E-value=3.2e-11 Score=131.76 Aligned_cols=216 Identities=15% Similarity=0.040 Sum_probs=133.0
Q ss_pred hhcccccCCChhHHHHHhhhccccc-------CCCChhhhhcccccchhccccCCHh-HHHhhcccccccccCCChhhHH
Q psy9003 382 ECHKAGLFGTPEQLKYLVDECHKAG-------LFGTPEQLKYLVDECHKAGLFGTPE-QLKYLVDECHKAGLFGTPEQLK 453 (1276)
Q Consensus 382 ~~~~a~~~~~id~vkyLi~~~h~~~-------~~~~~~~~~~~vt~lh~a~~~~~~~-~~~yli~~~~~~~~~~~~e~l~ 453 (1276)
....|+..|++|+|++|+.....+. ...+.++. ||||.|+..+..+ ++++|+..+-
T Consensus 14 ~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~----t~L~~a~~~~~~~~~v~~Ll~~Ga------------ 77 (269)
T 4b93_B 14 KLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFC----HPLCQCPKCAPAQKRLAKVPASGL------------ 77 (269)
T ss_dssp HHHHHHHTTCHHHHHHHHTCC--------------------------------------------CCC------------
T ss_pred HHHHHHHcCCHHHHHHHHHCCCcccccccccccccCccCC----CHHHHHHHhCCHHHHHHHHHHCCC------------
Confidence 3344556799999999997655432 12234455 9999998766543 6677665431
Q ss_pred HHHHHHhHhccCCChhhHHHhhhhhcccccCCChhhhhhhhhhhhhhccCCCHHHHHHHhhhhcccccCCCHHHHHHHHh
Q psy9003 454 YLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVD 533 (1276)
Q Consensus 454 ~l~~~~~~~~~~~~~~~~~~~v~~~~~a~~~~~~e~~~~lv~~~~~~~~~~~~~~~~~~~t~~~~a~~~g~~e~~~~lv~ 533 (1276)
.+|..+.+. .|..|.|..+|..|.+++|++...+++.... ...|+.+.|...|+.+++++|++
T Consensus 78 -------dvn~~d~~G-----~TpLh~A~~~g~~~~v~~Ll~~~a~~~~~~~-----~g~t~l~~a~~~~~~~~~~~Ll~ 140 (269)
T 4b93_B 78 -------GVNVTSQDG-----SSPLHVAALHGRADLIPLLLKHGANAGARNA-----DQAVPLHLACQQGHFQVVKCLLD 140 (269)
T ss_dssp -------CTTCCCTTS-----CCHHHHHHHTTCTTHHHHHHHTTCCTTCCCT-----TCCCHHHHHHHHTCHHHHHHHHH
T ss_pred -------CCCCcCCCC-----CCHHHHHHHcCcHHHHHHHHhcCCCcCccCC-----CCCCccccccccChHHHHHHHHH
Confidence 122222223 5778888899999999999988887776554 34678888888999999999999
Q ss_pred hhhhcCCCCCcchhhhhhhhhhccccCCCHHHHHHHHHhhhhccCCCChhhhhhhhhhhcccccCCCHHHHHHHHhhhhh
Q psy9003 534 ECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHK 613 (1276)
Q Consensus 534 ~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~ 613 (1276)
.+.++|.-+. +.-|..+.|+..|+.|.+++|++.++++|..... ..|..+-|...|++|.+++|++.+++
T Consensus 141 ~g~~~n~~d~-----~g~TpL~~A~~~g~~~~v~~Ll~~gadvn~~~~~-----g~t~Lh~A~~~g~~~~v~~Ll~~Gad 210 (269)
T 4b93_B 141 SNAKPNKKDL-----SGNTPLIYACSGGHHELVALLLQHGASINASNNK-----GNTALHEAVIEKHVFVVELLLLHGAS 210 (269)
T ss_dssp TTCCSCCCCT-----TCCCHHHHHHHTTCGGGHHHHHHTTCCTTCBCTT-----SCBHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred CCCCCCCCCC-----CCCCHHHHHHHCCCHHHHHHHHHCCCCCCccccC-----CCcHHHHHHHcCCHHHHHHHHHCCCC
Confidence 9888876554 4455666777899999999999999888832222 24555666688999999999999998
Q ss_pred ccCCCChhhhhhhHHHhhhccCCCCH-HHHHHH
Q psy9003 614 AGLFGTPEQLKYLVDECHKAGLFGTP-EQLKYL 645 (1276)
Q Consensus 614 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 645 (1276)
+|.+-..- -++++-|..++.+ |-|+.|
T Consensus 211 ~~~~d~~G-----~TpL~~A~~~~~i~~lL~~l 238 (269)
T 4b93_B 211 VQVLNKRQ-----RTAVDCAEQNSKIMELLQVV 238 (269)
T ss_dssp SCCCCTTS-----CCSGGGSCTTCHHHHHTTC-
T ss_pred CCCcCCCC-----CCHHHHHHhCCcHHHHHHHH
Confidence 87764443 5667777777763 444443
|
| >2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 | Back alignment and structure |
|---|
Probab=99.06 E-value=8.2e-11 Score=135.78 Aligned_cols=196 Identities=12% Similarity=0.031 Sum_probs=129.5
Q ss_pred hhhcccccCCChhhhhhhhhhhhhhccCCCHHHHHHHhhhhcccccCCCHHHHHHHHhhhhhc---CCCCCcchhhhhhh
Q psy9003 476 DECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKA---GLFGTPEQLKYLVD 552 (1276)
Q Consensus 476 ~~~~~a~~~~~~e~~~~lv~~~~~~~~~~~~~~~~~~~t~~~~a~~~g~~e~~~~lv~~~~~~---~~~~t~~~l~~~~~ 552 (1276)
|..|.|...|++|.+++|++...........+ +...|+.+.|+..|++|++++|++.+++. +++.. . -|
T Consensus 94 T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~--~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~-----~-~T 165 (376)
T 2aja_A 94 VICFVAAITGCSSALDTLCLLLTSDEIVKVIQ--AENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAE-----N-YH 165 (376)
T ss_dssp HHHHHHHHHCCHHHHHHHTTC--CCSSCC--C--HHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHH-----H-HH
T ss_pred CHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhc--cCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCC-----C-CC
Confidence 78888888999999999988766211111000 12357889999999999999999888642 22221 1 66
Q ss_pred hhhccccCCCHHHHHHHHHhhhhccCCCChhhhhhhhhhhcccc-cCCCHHHHHHHHhhhhhccCCCChhhhhhhHHHhh
Q psy9003 553 ECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAG-LFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECH 631 (1276)
Q Consensus 553 ~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 631 (1276)
..+.|...|++|.+++|++.+++++.+..+ ....|+.+.|. ..|++|.+++|++.++. --++++
T Consensus 166 pLh~Aa~~G~~eiv~~Ll~~ga~~~~~~~d---~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga~------------~~taL~ 230 (376)
T 2aja_A 166 AFRLAAENGHLHVLNRLCELAPTEATAMIQ---AENYYAFRWAAVGRGHHNVINFLLDCPVM------------LAYAEI 230 (376)
T ss_dssp HHHHHHHTTCHHHHHHHHHSCGGGHHHHHH---HHHHHHHHHHHSTTCCHHHHHHHTTSHHH------------HHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHcCCccchhccC---CCCCCHHHHHHHHCCCHHHHHHHHhCCCc------------cchHHH
Confidence 778888999999999999988876531111 12468888888 99999999999986643 256788
Q ss_pred hccCCCCHHHHHHHHHHHHhhcCCCChHHHhhhhhhhhhcccCCChhHHH--------HHHHHHHhhccCCChhHHHhhH
Q psy9003 632 KAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLK--------YLVDECHKAGLFGTPEQLKYLV 703 (1276)
Q Consensus 632 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~ 703 (1276)
.|..+|+.|.+++|+......+. .-.+++.|...|+++.++ |++..+-.++.....+++++|+
T Consensus 231 ~Aa~~g~~evv~lL~~~ga~~~~---------~~~~l~~A~~~g~~~vv~~~~~~~~~~~~~~li~~~~~~~~~~~~~Ll 301 (376)
T 2aja_A 231 HEFEYGEKYVNPFIARHVNRLKE---------MHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLL 301 (376)
T ss_dssp CTTTTTTTTHHHHHHHHHHHHHH---------HHTTTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCCGGGHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHhcCccccc---------ccHHHHHHHHCCChhhhcHHhhhhhHHHHHHHHHcchhhHHHHHHHHH
Confidence 88889999999999885443210 012566666666666432 2333333444444555555555
|
| >2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=4.7e-11 Score=128.35 Aligned_cols=108 Identities=18% Similarity=0.052 Sum_probs=68.2
Q ss_pred chhhhhhcccccCCCHHHHHHHhhhhhccC--CCCccc-chhhhhccccccccC---CChhhhHHhhhhhccccCCCChh
Q psy9003 301 KYLVDECHKAGLFGTPEQLKYLVDECHKAG--LFGTPE-QLKYLVDECHKAGLF---GTPEQLKYLVDECHKAGLFGTPE 374 (1276)
Q Consensus 301 t~~~~~~~~a~~~gsi~~l~~Lv~~~~~~~--~~~~~~-~~~~~~~~~~~a~~~---g~ie~~~yLi~~~h~~~~~~~~e 374 (1276)
....|.++.|+..|+++.+++|++..-..+ ++..+. .-....|..+.|+.. |++|+|++|++....
T Consensus 11 ~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~-------- 82 (273)
T 2pnn_A 11 LYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARK-------- 82 (273)
T ss_dssp CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHH--------
T ss_pred cccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhcc--------
Confidence 445666788888999999998887543222 221000 001224556666655 888888888776531
Q ss_pred hHHHHHhhhcccccCCChhHHHHHhhhcccccCCCChhhhhcccccchhccccCCHhHHHhhcccc
Q psy9003 375 QLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDEC 440 (1276)
Q Consensus 375 ~~~~~~~~~~~a~~~~~id~vkyLi~~~h~~~~~~~~~~~~~~vt~lh~a~~~~~~~~~~yli~~~ 440 (1276)
++.++.+||..- ...+.++. ||||.|+..|+.++|++|+..+
T Consensus 83 -----------------~~~~~~~i~~~~---~~~d~~g~----tpL~~A~~~g~~~~v~~Ll~~g 124 (273)
T 2pnn_A 83 -----------------TDSLKQFVNASY---TDSYYKGQ----TALHIAIERRNMTLVTLLVENG 124 (273)
T ss_dssp -----------------TTCHHHHHTCCC---CSTTTTTC----CHHHHHHHTTCHHHHHHHHHTT
T ss_pred -----------------ccchhHHhhccc---ccccCCCC----CHHHHHHHcCCHHHHHHHHHCC
Confidence 122344444321 12344566 9999999999999999999864
|
| >2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A | Back alignment and structure |
|---|
Probab=99.03 E-value=1.5e-10 Score=123.00 Aligned_cols=209 Identities=15% Similarity=0.007 Sum_probs=140.2
Q ss_pred cccchhccccCCHhHHHhhcccccccccCCChhhHHHHHHHHhHhcc----CCChhhHHHhhhhhcccccC---CChhhh
Q psy9003 418 VDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGL----FGTPEQLKYLVDECHKAGLF---GTPEQL 490 (1276)
Q Consensus 418 vt~lh~a~~~~~~~~~~yli~~~~~~~~~~~~e~l~~l~~~~~~~~~----~~~~~~~~~~v~~~~~a~~~---~~~e~~ 490 (1276)
-|+||.|+..|+.+.|+.|+. +|......++. .+... .|..|.|..+ |+.|.+
T Consensus 3 ~t~L~~A~~~g~~~~v~~ll~---------------~l~~~g~~i~~~~~~~d~~g-----~t~L~~A~~~~~~g~~~~v 62 (256)
T 2etb_A 3 RDRLFSVVSRGVPEELTGLLE---------------YLRWNSKYLTDSAYTEGSTG-----KTCLMKAVLNLQDGVNACI 62 (256)
T ss_dssp HHHHHHHHHHTCGGGGTTHHH---------------HHHHHTCCTTSGGGSBTTTT-----BCHHHHHHHTCBTTBCTTH
T ss_pred ccHHHHHHHcCCHHHHHHHHH---------------HHHHcCCCcccccccCCCCC-----CCHHHHHHHccccchHHHH
Confidence 499999999999986644432 11111111111 12222 5777888877 999999
Q ss_pred hhhhhhhhhhccCCC------HHHHHHHhhhhcccccCCCHHHHHHHHhhhhhcCCCCCcc--------hhhhhhhhhhc
Q psy9003 491 KYLVDECHKAGLFGT------PEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPE--------QLKYLVDECHK 556 (1276)
Q Consensus 491 ~~lv~~~~~~~~~~~------~~~~~~~~t~~~~a~~~g~~e~~~~lv~~~~~~~~~~t~~--------~l~~~~~~~~~ 556 (1276)
++|++.+.+.+.... .+.-....|+.+.|+..|++|++++|++.++++|..+... .-.|.-|..+.
T Consensus 63 ~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~ 142 (256)
T 2etb_A 63 MPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSL 142 (256)
T ss_dssp HHHHHHHHHTTCSSCGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHH
T ss_pred HHHHhcCCcccchhhhcccccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccccccccccccccccCCCCHHHH
Confidence 999998888763220 0000134789999999999999999999998888544321 12246677788
Q ss_pred cccCCCHHHHHHHHH---hhhhccCCCChhhhhhhhhhhccccc--CCCHH-------HHHHHHhhhhhccCCCCh--hh
Q psy9003 557 AGLFGTPEQLKYLVD---ECHKAGLFGTPEQLKYLVDECHKAGL--FGTPE-------QLKYLVDECHKAGLFGTP--EQ 622 (1276)
Q Consensus 557 ~~~~~~~e~~~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~e-------~~~~l~~~~~~~~~~~~~--~~ 622 (1276)
|...|++|.+++|++ .++++|.....- .|..+-|.. +|+.| .+++|++.+++++..... .+
T Consensus 143 A~~~~~~~~v~~Ll~~~~~ga~~n~~d~~g-----~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~ 217 (256)
T 2etb_A 143 AACTKQWDVVTYLLENPHQPASLEATDSLG-----NTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEIS 217 (256)
T ss_dssp HHHTTCHHHHHHHHHCSSCCCCTTCCCTTS-----CCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGGCC
T ss_pred HHHcCCHHHHHHHHhccccCCCcCccCCCC-----CCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCccccccccccc
Confidence 889999999999999 888888332221 345555555 78888 999999999999432211 11
Q ss_pred hhhhHHHhhhccCCCCHHHHHHHHHHHHh
Q psy9003 623 LKYLVDECHKAGLFGTPEQLKYLVDECHK 651 (1276)
Q Consensus 623 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 651 (1276)
.+.--++++-|...|..|.+++|++.-..
T Consensus 218 d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~ 246 (256)
T 2etb_A 218 NHQGLTPLKLAAKEGKIEIFRHILQREFS 246 (256)
T ss_dssp CTTSCCHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHhCCHHHHHHHHhCCCC
Confidence 11225667777777888888888875433
|
| >4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A | Back alignment and structure |
|---|
Probab=99.03 E-value=1.1e-10 Score=119.58 Aligned_cols=152 Identities=18% Similarity=0.109 Sum_probs=102.6
Q ss_pred cccCCChhHHHHHhhhcccccCCCChhhhhcccccchhccccCCHhHHHhhcccccccccCCChhhHHHHHHHHhHhccC
Q psy9003 386 AGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLF 465 (1276)
Q Consensus 386 a~~~~~id~vkyLi~~~h~~~~~~~~~~~~~~vt~lh~a~~~~~~~~~~yli~~~~~~~~~~~~e~l~~l~~~~~~~~~~ 465 (1276)
|...|++|+|++|+.. ..++-..+.++. ||||.|+..++.+++++|+..+.- ++..
T Consensus 11 Aa~~G~~~~v~~Ll~~-Gadvn~~d~~g~----t~l~~a~~~~~~~~~~~ll~~gad-------------------~~~~ 66 (169)
T 4gpm_A 11 AAENGNKDRVKDLIEN-GADVNASDSDGR----TPLHHAAENGHKEVVKLLISKGAD-------------------VNAK 66 (169)
T ss_dssp HHHTTCHHHHHHHHHT-TCCTTCCCTTSC----CHHHHHHHTTCHHHHHHHHHTTCC-------------------TTCC
T ss_pred HHHcCCHHHHHHHHHC-CCCCCCcCCCCC----CHHHHHHHcCCHHHHHHHHhcccc-------------------hhhh
Confidence 4447999999999964 456667777888 999999999999999988864321 1111
Q ss_pred CChhhHHHhhhhhcccccCCChhhhhhhhhhhhhhccCCCHHHHHHHhhhhcccccCCCHHHHHHHHhhhhhcCCCCCcc
Q psy9003 466 GTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPE 545 (1276)
Q Consensus 466 ~~~~~~~~~v~~~~~a~~~~~~e~~~~lv~~~~~~~~~~~~~~~~~~~t~~~~a~~~g~~e~~~~lv~~~~~~~~~~t~~ 545 (1276)
+... .|..|.|..+|..|.+++|++...++|.... ...|+.+.|+..|++|++++|++.+++++..+.
T Consensus 67 d~~g-----~TpLh~A~~~g~~~~v~~Ll~~gadvn~~d~-----~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~-- 134 (169)
T 4gpm_A 67 DSDG-----RTPLHHAAENGHKEVVKLLISKGADVNAKDS-----DGRTPLHHAAENGHKEVVKLLISKGADVNTSDS-- 134 (169)
T ss_dssp CTTS-----CCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT-----TSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT--
T ss_pred ccCC-----CCHHHHHHHcCCHHHHHHHHHCcCCCCCCCC-----CCCCHHHHHHHcCCHHHHHHHHHcCCCccccCC--
Confidence 2222 4666777777777777777777777765543 346777777777777777777777777664444
Q ss_pred hhhhhhhhhhccccCCCHHHHHHHHHhhhhc
Q psy9003 546 QLKYLVDECHKAGLFGTPEQLKYLVDECHKA 576 (1276)
Q Consensus 546 ~l~~~~~~~~~~~~~~~~e~~~~l~~~~~~~ 576 (1276)
+.-|..+.|...|+.|.+++|++.|++|
T Consensus 135 ---~G~TpL~~A~~~g~~~iv~~Ll~~GA~i 162 (169)
T 4gpm_A 135 ---DGRTPLDLAREHGNEEVVKLLEKQGGWL 162 (169)
T ss_dssp ---TSCCHHHHHHHTTCHHHHHHHHTC----
T ss_pred ---CCCCHHHHHHHcCCHHHHHHHHHCCCCc
Confidence 3344455555777777777777777765
|
| >1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 | Back alignment and structure |
|---|
Probab=99.02 E-value=4.1e-11 Score=133.80 Aligned_cols=252 Identities=13% Similarity=-0.069 Sum_probs=147.2
Q ss_pred hhhcccccCCCHHHHHHHhhhhhccCCCCcccchhhhhccccccccCCChhhhHHhhhhhccccCCCChhhHHHHH----
Q psy9003 305 DECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLV---- 380 (1276)
Q Consensus 305 ~~~~~a~~~gsi~~l~~Lv~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~ie~~~yLi~~~h~~~~~~~~e~~~~~~---- 380 (1276)
+.+.+++...+-|+++||++..-.++. .+... ..+..|++|+|++|++..-..+.+ .+.-+..
T Consensus 21 ~~~~~~~~~~~~dlv~~ll~~ga~i~~--~~~~g--------~~~~~g~~~~v~~Ll~~g~~~~~~---~~~~a~~~~~~ 87 (327)
T 1sw6_A 21 DRTAGPIITFTHDLTSDFLSSPLKIMK--ALPSP--------VVNDNEQKMKLEAFLQRLLFPEIQ---EMPTSLNNDSS 87 (327)
T ss_dssp ----CCEEECCTTCCCSTTTSSCCCEE--CBCCC--------CCCCHHHHHHHHHHHHHHHC------------------
T ss_pred cccccchhhhcCchHHHHhhCCccccc--CCCCC--------CcccCchhHHHHHHHHhccCCccc---cchHhhhcccc
Confidence 344445556667888888877544442 22111 122348999999998765432210 0000000
Q ss_pred -----------hhhcccccCCChhHHHHHhhhcccccCC-CChhhhhcccccchhccccCCHhHHHhhcccccccccCCC
Q psy9003 381 -----------DECHKAGLFGTPEQLKYLVDECHKAGLF-GTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGT 448 (1276)
Q Consensus 381 -----------~~~~~a~~~~~id~vkyLi~~~h~~~~~-~~~~~~~~~vt~lh~a~~~~~~~~~~yli~~~~~~~~~~~ 448 (1276)
.-.+-+...+..+++++|+... .++-. .+.++. ||||.|+..|+.++|++||..+ .++...+
T Consensus 88 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~g-~dvn~~~d~~g~----TpLh~Aa~~g~~~~v~~Ll~~G-ad~n~~d 161 (327)
T 1sw6_A 88 NRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQ-LNLNIPVDEHGN----TPLHWLTSIANLELVKHLVKHG-SNRLYGD 161 (327)
T ss_dssp ----------------CHHHHHHHHHHHCTTSC-CCSCSCCSTTCC----CHHHHHHHTTCHHHHHHHHHTT-CCTTBCC
T ss_pred cccccccCCccchhHHHHHhhHHHHHHHHHhcC-CCcccccCCCCC----cHHHHHHHcCCHHHHHHHHHcC-CCCCCcC
Confidence 0002223345567777777543 34433 688888 9999999999999999999865 2222222
Q ss_pred hhhHHHHHHHHhHhccCCChhhHHHhhhhhcccccCCC---hhhhhhhhhhh-hhhccCCCHHHHHHHhhhhccccc---
Q psy9003 449 PEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGT---PEQLKYLVDEC-HKAGLFGTPEQLKYLVDECHKAGL--- 521 (1276)
Q Consensus 449 ~e~l~~l~~~~~~~~~~~~~~~~~~~v~~~~~a~~~~~---~e~~~~lv~~~-~~~~~~~~~~~~~~~~t~~~~a~~--- 521 (1276)
.+. .|..|.|..+|. .+.++.|+... .+++.... ...|+.+.|+.
T Consensus 162 ~~g-----------------------~TpLh~A~~~g~~~~~~~~~~ll~~~~~~~~~~d~-----~g~tpLh~A~~~~~ 213 (327)
T 1sw6_A 162 NMG-----------------------ESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDS-----MNRTILHHIIITSG 213 (327)
T ss_dssp TTC-----------------------CCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEECT-----TCCCHHHHHHHHHT
T ss_pred CCC-----------------------CCHHHHHHHhcccccHHHHHHHHHhhhccccCCCC-----CCCCHHHHHHHHcc
Confidence 222 467777777776 56666666665 45554443 34678888887
Q ss_pred -CCCHHHHHHHHhhhhh------------------cCCCCCcchhhhhhhhhhccccCCCHHHHHHHHHhhhhccCCCCh
Q psy9003 522 -FGTPEQLKYLVDECHK------------------AGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTP 582 (1276)
Q Consensus 522 -~g~~e~~~~lv~~~~~------------------~~~~~t~~~l~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~ 582 (1276)
.|..+++++|++.++. .+++..+. ...|..+.|+. +++|++. ++| ..|
T Consensus 214 ~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~---~g~t~L~~a~~------~~~Ll~~--~~n--~~d 280 (327)
T 1sw6_A 214 MTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNG---ERKDSILENLD------LKWIIAN--MLN--AQD 280 (327)
T ss_dssp STTCHHHHHHHHHHHHHHHHHGGGCCEEEC-------------------CHHHHHCS------HHHHHHH--TTT--CCC
T ss_pred ccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccc---cCCChhHHHHH------HHHHHHh--CCC--CCC
Confidence 8999999999998652 22222221 23333344443 7888876 444 222
Q ss_pred hhhhhhhhhhcccccCCCHHHHHHHHhhhhhccCCCC
Q psy9003 583 EQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGT 619 (1276)
Q Consensus 583 ~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~ 619 (1276)
. .-.|..|-|..+|++|.+++|++.++++|.+-.
T Consensus 281 ~---~G~TpLh~A~~~g~~~~v~~Ll~~Gad~~~~d~ 314 (327)
T 1sw6_A 281 S---NGDTCLNIAARLGNISIVDALLDYGADPFIANK 314 (327)
T ss_dssp T---TSCCHHHHHHHHCCHHHHHHHHHTTCCTTCCCT
T ss_pred C---CCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCC
Confidence 1 224666666689999999999999999876643
|
| >2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A | Back alignment and structure |
|---|
Probab=99.02 E-value=8e-11 Score=125.13 Aligned_cols=180 Identities=14% Similarity=-0.013 Sum_probs=129.3
Q ss_pred CChhhhhcccccchhcccc---CCHhHHHhhcccccccccCCChhhHHHHHHHHhHhccCCChhhHHHhhhhhcccccCC
Q psy9003 409 GTPEQLKYLVDECHKAGLF---GTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFG 485 (1276)
Q Consensus 409 ~~~~~~~~~vt~lh~a~~~---~~~~~~~yli~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~~~~~~~v~~~~~a~~~~ 485 (1276)
.+.++. ||||.|+.. |+.++|++|+..+........ ++. .+....+ ..-.|..|.|..+|
T Consensus 39 ~d~~g~----t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~------~~~----~~~~~~d---~~g~t~L~~A~~~g 101 (256)
T 2etb_A 39 EGSTGK----TCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKP------LVN----AQCTDEF---YQGHSALHIAIEKR 101 (256)
T ss_dssp BTTTTB----CHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSC------GGG----CCCCSTT---TTTCCHHHHHHHTT
T ss_pred CCCCCC----CHHHHHHHccccchHHHHHHHHhcCCcccchhh------hcc----ccccccc---ccCCCHHHHHHHcC
Confidence 467778 999999988 999999999965432221110 000 0000000 01158889999999
Q ss_pred ChhhhhhhhhhhhhhccCCCHHH--------HHHHhhhhcccccCCCHHHHHHHHh---hhhhcCCCCCcchhhhhhhhh
Q psy9003 486 TPEQLKYLVDECHKAGLFGTPEQ--------LKYLVDECHKAGLFGTPEQLKYLVD---ECHKAGLFGTPEQLKYLVDEC 554 (1276)
Q Consensus 486 ~~e~~~~lv~~~~~~~~~~~~~~--------~~~~~t~~~~a~~~g~~e~~~~lv~---~~~~~~~~~t~~~l~~~~~~~ 554 (1276)
+.|.+++|++.+.++|....... -.+..|+.+.|+..|+++++++|++ .++++|..+. ..-|..
T Consensus 102 ~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~ga~~n~~d~-----~g~TpL 176 (256)
T 2etb_A 102 SLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDS-----LGNTVL 176 (256)
T ss_dssp CHHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCT-----TSCCHH
T ss_pred CHHHHHHHHHcCCCCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCcCccCC-----CCCCHH
Confidence 99999999999888887653110 0124789999999999999999999 7888875554 344555
Q ss_pred hcccc--CCCHH-------HHHHHHHhhhhc-------cCCCChhhhhhhhhhhcccccCCCHHHHHHHHhhhhhcc
Q psy9003 555 HKAGL--FGTPE-------QLKYLVDECHKA-------GLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAG 615 (1276)
Q Consensus 555 ~~~~~--~~~~e-------~~~~l~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~ 615 (1276)
|.|+. .++.| .+++|++.++++ |..... ..|..+-|...|+.|.+++|++.+.+..
T Consensus 177 h~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~~-----g~tpL~~A~~~g~~~~v~~Ll~~g~~~~ 248 (256)
T 2etb_A 177 HALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQ-----GLTPLKLAAKEGKIEIFRHILQREFSGA 248 (256)
T ss_dssp HHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGGCCCTT-----SCCHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHcccCCchhhHHHHHHHHHHHHcCCCcccccccccccCCC-----CCCHHHHHHHhCCHHHHHHHHhCCCCCC
Confidence 66666 88988 999999999999 522222 2566677779999999999999998764
|
| >4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A | Back alignment and structure |
|---|
Probab=98.97 E-value=2.2e-10 Score=117.36 Aligned_cols=157 Identities=17% Similarity=0.100 Sum_probs=115.6
Q ss_pred ccchhccccCCHhHHHhhcccccccccCCChhhHHHHHHHHhHhccCCChhhHHHhhhhhcccccCCChhhhhhhhhhhh
Q psy9003 419 DECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECH 498 (1276)
Q Consensus 419 t~lh~a~~~~~~~~~~yli~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~~~~~~~v~~~~~a~~~~~~e~~~~lv~~~~ 498 (1276)
+.|+.|+..|+.++|++||..+- ++ |..+... .|..|.|...+..+.+++|++...
T Consensus 6 ~~L~~Aa~~G~~~~v~~Ll~~Ga-dv------------------n~~d~~g-----~t~l~~a~~~~~~~~~~~ll~~ga 61 (169)
T 4gpm_A 6 KRLIEAAENGNKDRVKDLIENGA-DV------------------NASDSDG-----RTPLHHAAENGHKEVVKLLISKGA 61 (169)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTC-CT------------------TCCCTTS-----CCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCHHHHHHHHHCCC-CC------------------CCcCCCC-----CCHHHHHHHcCCHHHHHHHHhccc
Confidence 46888999999999999987542 22 2112222 467788888888889999988888
Q ss_pred hhccCCCHHHHHHHhhhhcccccCCCHHHHHHHHhhhhhcCCCCCcchhhhhhhhhhccccCCCHHHHHHHHHhhhhccC
Q psy9003 499 KAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGL 578 (1276)
Q Consensus 499 ~~~~~~~~~~~~~~~t~~~~a~~~g~~e~~~~lv~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~ 578 (1276)
+++.... ...|+.+.|+..|+++++++|++.++++|.-+. +.-|..+.|...|++|.+++|++.++++|.
T Consensus 62 d~~~~d~-----~g~TpLh~A~~~g~~~~v~~Ll~~gadvn~~d~-----~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~ 131 (169)
T 4gpm_A 62 DVNAKDS-----DGRTPLHHAAENGHKEVVKLLISKGADVNAKDS-----DGRTPLHHAAENGHKEVVKLLISKGADVNT 131 (169)
T ss_dssp CTTCCCT-----TSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT-----TSCCHHHHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred chhhhcc-----CCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCC-----CCCCHHHHHHHcCCHHHHHHHHHcCCCccc
Confidence 8877654 457888999999999999999998888875554 445666677789999999999999988884
Q ss_pred CCChhhhhhhhhhhcccccCCCHHHHHHHHhhhhhc
Q psy9003 579 FGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKA 614 (1276)
Q Consensus 579 ~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~ 614 (1276)
...+- .|..+-|..+|+.|.+++|++.|++|
T Consensus 132 ~d~~G-----~TpL~~A~~~g~~~iv~~Ll~~GA~i 162 (169)
T 4gpm_A 132 SDSDG-----RTPLDLAREHGNEEVVKLLEKQGGWL 162 (169)
T ss_dssp CCTTS-----CCHHHHHHHTTCHHHHHHHHTC----
T ss_pred cCCCC-----CCHHHHHHHcCCHHHHHHHHHCCCCc
Confidence 33222 45555566889999999999999877
|
| >3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A | Back alignment and structure |
|---|
Probab=98.93 E-value=6.4e-10 Score=111.13 Aligned_cols=163 Identities=11% Similarity=-0.029 Sum_probs=124.3
Q ss_pred ccchhccccCCHhHHHhhcccccccccCCChhhHHHHHHHHhHhccCCChhhHHHhhhhhcccccCCChhhhhhhhhhhh
Q psy9003 419 DECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECH 498 (1276)
Q Consensus 419 t~lh~a~~~~~~~~~~yli~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~~~~~~~v~~~~~a~~~~~~e~~~~lv~~~~ 498 (1276)
|+||.|+..|+.++|++|+..+.......+... .|..|.|...|+.|.+++|++...
T Consensus 4 ~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g-----------------------~t~L~~A~~~~~~~~v~~Ll~~g~ 60 (172)
T 3v30_A 4 LSIHQLAAQGELDQLKEHLRKGDNLVNKPDERG-----------------------FTPLIWASAFGEIETVRFLLEWGA 60 (172)
T ss_dssp CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTTS-----------------------CCHHHHHHHTTCHHHHHHHHHHTC
T ss_pred hhHHHHHHcCCHHHHHHHHHcCcccccCCCCCC-----------------------CCHHHHHHHcCCHHHHHHHHHcCC
Confidence 899999999999999999987654332222221 467788888889999999998888
Q ss_pred hhccCCCHHHHHHHhhhhcccccCCCHHHHHHHHhhhhhcCCCCCcchhhhhhhhhhccccCCCHHHHHHHHHhhhhccC
Q psy9003 499 KAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGL 578 (1276)
Q Consensus 499 ~~~~~~~~~~~~~~~t~~~~a~~~g~~e~~~~lv~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~ 578 (1276)
+++.... ...|+.+.|+..|+++++++|++.+.+++..+. ..-|..+.|+..|++|.+++|++.+++++.
T Consensus 61 ~~~~~~~-----~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~-----~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~ 130 (172)
T 3v30_A 61 DPHILAK-----ERESALSLASTGGYTDIVGLLLERDVDINIYDW-----NGGTPLLYAVRGNHVKCVEALLARGADLTT 130 (172)
T ss_dssp CTTCCCT-----TCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCT-----TSCCHHHHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred Cchhhcc-----cCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCC-----CCCCHHHHHHHcCCHHHHHHHHHcCCCccc
Confidence 7776553 346888899999999999999999888875554 445666777788999999999999988884
Q ss_pred CCChhhhhhhhhhhcccccCCCHHHHHHHHhhhhhccCCCC
Q psy9003 579 FGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGT 619 (1276)
Q Consensus 579 ~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~ 619 (1276)
..... .|..+-|...|+.+.+++|++.++++..+-.
T Consensus 131 ~~~~g-----~t~l~~A~~~~~~~~~~~L~~~~~~~~~~~~ 166 (172)
T 3v30_A 131 EADSG-----YTPMDLAVALGYRKVQQVIENHILKLFQSNL 166 (172)
T ss_dssp CCTTS-----CCHHHHHHHHTCHHHHHHHHHHHHHHSCC--
T ss_pred cCCCC-----CCHHHHHHHhCcHHHHHHHHHHHHHHhcccC
Confidence 33222 4555566688999999999999998865543
|
| >3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A | Back alignment and structure |
|---|
Probab=98.92 E-value=5.2e-10 Score=111.75 Aligned_cols=155 Identities=11% Similarity=-0.042 Sum_probs=113.7
Q ss_pred ccccCCChhHHHHHhhhcccccCCCChhhhhcccccchhccccCCHhHHHhhcccccccccCCChhhHHHHHHHHhHhcc
Q psy9003 385 KAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGL 464 (1276)
Q Consensus 385 ~a~~~~~id~vkyLi~~~h~~~~~~~~~~~~~~vt~lh~a~~~~~~~~~~yli~~~~~~~~~~~~e~l~~l~~~~~~~~~ 464 (1276)
.|+..|++++|++|+...-.+.-..+..+. |+||.|+..|+.++|++|+..+.. +...+
T Consensus 8 ~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~----t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~---------------- 66 (172)
T 3v30_A 8 QLAAQGELDQLKEHLRKGDNLVNKPDERGF----TPLIWASAFGEIETVRFLLEWGAD-PHILA---------------- 66 (172)
T ss_dssp HHHHTTCHHHHHHHHTTCSGGGGCCCTTSC----CHHHHHHHTTCHHHHHHHHHHTCC-TTCCC----------------
T ss_pred HHHHcCCHHHHHHHHHcCcccccCCCCCCC----CHHHHHHHcCCHHHHHHHHHcCCC-chhhc----------------
Confidence 344467888888888776554555566677 899999988999998888865322 11111
Q ss_pred CCChhhHHHhhhhhcccccCCChhhhhhhhhhhhhhccCCCHHHHHHHhhhhcccccCCCHHHHHHHHhhhhhcCCCCCc
Q psy9003 465 FGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTP 544 (1276)
Q Consensus 465 ~~~~~~~~~~v~~~~~a~~~~~~e~~~~lv~~~~~~~~~~~~~~~~~~~t~~~~a~~~g~~e~~~~lv~~~~~~~~~~t~ 544 (1276)
... .|..|.|...|..|.+++|++...+++.... ...|+.+.|+..|+++++++|++.+++++..+.
T Consensus 67 --~~g-----~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~-----~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~- 133 (172)
T 3v30_A 67 --KER-----ESALSLASTGGYTDIVGLLLERDVDINIYDW-----NGGTPLLYAVRGNHVKCVEALLARGADLTTEAD- 133 (172)
T ss_dssp --TTC-----CCHHHHHHHTTCHHHHHHHHTTTCCTTCCCT-----TSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT-
T ss_pred --ccC-----CCHHHHHHHCCCHHHHHHHHHcCCCCCCCCC-----CCCCHHHHHHHcCCHHHHHHHHHcCCCccccCC-
Confidence 111 4667777888888888888888777776553 346888889999999999999998888775544
Q ss_pred chhhhhhhhhhccccCCCHHHHHHHHHhhhhcc
Q psy9003 545 EQLKYLVDECHKAGLFGTPEQLKYLVDECHKAG 577 (1276)
Q Consensus 545 ~~l~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~ 577 (1276)
+..|..+.|...|+.+.+++|.+.++++.
T Consensus 134 ----~g~t~l~~A~~~~~~~~~~~L~~~~~~~~ 162 (172)
T 3v30_A 134 ----SGYTPMDLAVALGYRKVQQVIENHILKLF 162 (172)
T ss_dssp ----TSCCHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred ----CCCCHHHHHHHhCcHHHHHHHHHHHHHHh
Confidence 44566666778899999999999998887
|
| >3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A* | Back alignment and structure |
|---|
Probab=98.91 E-value=5.5e-10 Score=118.70 Aligned_cols=209 Identities=14% Similarity=0.035 Sum_probs=138.8
Q ss_pred cccccchhccccCCHhHHHhhcccccccccCCChhhHHHHHHHHhHhccCC----ChhhHHHhhhhhcccc---cCCChh
Q psy9003 416 YLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFG----TPEQLKYLVDECHKAG---LFGTPE 488 (1276)
Q Consensus 416 ~~vt~lh~a~~~~~~~~~~yli~~~~~~~~~~~~e~l~~l~~~~~~~~~~~----~~~~~~~~v~~~~~a~---~~~~~e 488 (1276)
|.-|+||.|+..|+.+.|+.|+. +|......++... ... .|..|.|. ..|+.|
T Consensus 4 ~~~~~L~~A~~~g~~~~v~~ll~---------------~l~~~~~~~~~~~~~~~~~g-----~t~L~~A~~~~~~g~~~ 63 (260)
T 3jxi_A 4 FNRPILFDIVSRGSPDGLEGLLS---------------FLLTHKKRLTDEEFREPSTG-----KTCLPKALLNLSAGRND 63 (260)
T ss_dssp CCHHHHHHHHHHTCGGGGTTHHH---------------HHHHHTCCTTSGGGSCTTTC-----CCHHHHHHTSCBTTBCT
T ss_pred chHHHHHHHHHhCCHHHHHHHHH---------------HHHhcCCCcchhhhhccCCC-----CcHHHHHHHHhhcCCHH
Confidence 34499999999999998776664 2222222222110 112 46677666 568999
Q ss_pred hhhhhhhhhhhhccCCCHHHH--------HHHhhhhcccccCCCHHHHHHHHhhhhhcCCCCCcc---------hhhhhh
Q psy9003 489 QLKYLVDECHKAGLFGTPEQL--------KYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPE---------QLKYLV 551 (1276)
Q Consensus 489 ~~~~lv~~~~~~~~~~~~~~~--------~~~~t~~~~a~~~g~~e~~~~lv~~~~~~~~~~t~~---------~l~~~~ 551 (1276)
.+++|++.+++.+.. .+++ ....|+.+.|+..|+++++++|++.++++|..+... .-.+..
T Consensus 64 ~v~~Ll~~g~~~~~~--~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~ 141 (260)
T 3jxi_A 64 TIPILLDIAEKTGNM--REFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGE 141 (260)
T ss_dssp HHHHHHHHHHHTTCH--HHHHTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCS
T ss_pred HHHHHHHhcccccch--HhhhcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCccccccccCcccccccccCCC
Confidence 999999988774421 0000 023789999999999999999999998888544210 113566
Q ss_pred hhhhccccCCCHHHHHHHHH---hhhhccCCCChhhhhhhhhhhcccccCCC---------HHHHHHHHhhhhhccCCCC
Q psy9003 552 DECHKAGLFGTPEQLKYLVD---ECHKAGLFGTPEQLKYLVDECHKAGLFGT---------PEQLKYLVDECHKAGLFGT 619 (1276)
Q Consensus 552 ~~~~~~~~~~~~e~~~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~e~~~~l~~~~~~~~~~~~ 619 (1276)
|..+.|...|++|.+++|++ .++++|.....- .|..+-|...|+ ++.+++|++.++++|...+
T Consensus 142 tpL~~A~~~g~~~~v~~Ll~~~~~ga~~~~~d~~g-----~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~ 216 (260)
T 3jxi_A 142 LPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRG-----NTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTN 216 (260)
T ss_dssp SHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTS-----CCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCC
T ss_pred CHHHHHHHcCCHHHHHHHHhccccCCCCcccCCCC-----CcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccc
Confidence 77788889999999999999 788888322221 344444445555 7999999999999964332
Q ss_pred hhhh--hhhHHHhhhccCCCCHHHHHHHHHHHHh
Q psy9003 620 PEQL--KYLVDECHKAGLFGTPEQLKYLVDECHK 651 (1276)
Q Consensus 620 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 651 (1276)
.... +.-.++++-|..+|..|.+++|++.-..
T Consensus 217 ~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~ 250 (260)
T 3jxi_A 217 LEALLNNDGLSPLMMAAKTGKIGIFQHIIRREIA 250 (260)
T ss_dssp GGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhhcccCCCCCHHHHHHHcCCHHHHHHHHHhCCC
Confidence 2111 2225667777777888888888875443
|
| >1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B | Back alignment and structure |
|---|
Probab=98.91 E-value=2e-09 Score=105.59 Aligned_cols=147 Identities=16% Similarity=0.055 Sum_probs=105.1
Q ss_pred cccccCCChHHHHHHHhhhhccCCCCCccccchhhhhhcccccCCCHHHHHHHhhhhhccCCCCcccchhhhhccccccc
Q psy9003 270 HKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAG 349 (1276)
Q Consensus 270 h~~~~~~~ie~~~yli~e~~~~~~~~~~~~~t~~~~~~~~a~~~gsi~~l~~Lv~~~~~~~~~~~~~~~~~~~~~~~~a~ 349 (1276)
|.|...|++|++++|++....++-..+..|.|.+ |. +..|+.+++++|++..-.++. .+. ...|+.+.|+
T Consensus 7 ~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L----~~-~~~~~~~~v~~Ll~~g~~~~~--~~~---~g~t~L~~A~ 76 (156)
T 1bd8_A 7 SGAAARGDVQEVRRLLHRELVHPDALNRFGKTAL----QV-MMFGSTAIALELLKQGASPNV--QDT---SGTSPVHDAA 76 (156)
T ss_dssp HHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHH----HH-SCTTCHHHHHHHHHTTCCTTC--CCT---TSCCHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHhhCcCccccCCCCCcHH----HH-HHcCCHHHHHHHHHCCCCCCC--cCC---CCCCHHHHHH
Confidence 3444457778888888874346555555555555 55 568999999999987544432 221 2346778888
Q ss_pred cCCChhhhHHhhhhhccccC-CCChhhHHHHHhhhcccccCCChhHHHHHhhhcccccCCCChhhhhcccccchhccccC
Q psy9003 350 LFGTPEQLKYLVDECHKAGL-FGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFG 428 (1276)
Q Consensus 350 ~~g~ie~~~yLi~~~h~~~~-~~~~e~~~~~~~~~~~a~~~~~id~vkyLi~~~h~~~~~~~~~~~~~~vt~lh~a~~~~ 428 (1276)
..|+++++++|++-.-..+. +....+..+ .|...|+.+++++|+.. .++...+.++. ||||.|+..|
T Consensus 77 ~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~------~A~~~~~~~~v~~Ll~~--~~~~~~~~~g~----t~l~~A~~~~ 144 (156)
T 1bd8_A 77 RTGFLDTLKVLVEHGADVNVPDGTGALPIH------LAVQEGHTAVVSFLAAE--SDLHRRDARGL----TPLELALQRG 144 (156)
T ss_dssp HTTCHHHHHHHHHTTCCSCCCCTTSCCHHH------HHHHHTCHHHHHHHHTT--SCTTCCCTTSC----CHHHHHHHSC
T ss_pred HcCcHHHHHHHHHcCCCCCCcCCCCCcHHH------HHHHhChHHHHHHHHhc--cCCCCcCCCCC----CHHHHHHHcC
Confidence 99999999999986533332 223332233 23336899999999988 77777888888 9999999999
Q ss_pred CHhHHHhhcc
Q psy9003 429 TPEQLKYLVD 438 (1276)
Q Consensus 429 ~~~~~~yli~ 438 (1276)
+.+++++|+.
T Consensus 145 ~~~~v~~Ll~ 154 (156)
T 1bd8_A 145 AQDLVDILQG 154 (156)
T ss_dssp CHHHHHHHHT
T ss_pred cHHHHHHHHh
Confidence 9999999986
|
| >3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A | Back alignment and structure |
|---|
Probab=98.89 E-value=6.9e-10 Score=112.06 Aligned_cols=94 Identities=12% Similarity=-0.057 Sum_probs=49.4
Q ss_pred hhhhcccccCCCHHHHHHHHhhhhhcCCCCCcchhhhhhhhhhccccCCCHHHHHHHHHhhhhccCCCChhhhhhhhhhh
Q psy9003 513 VDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDEC 592 (1276)
Q Consensus 513 ~t~~~~a~~~g~~e~~~~lv~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 592 (1276)
.|+.+.|+..|+++++++|++.+.++|..+. +..|..+.|...|+.|.+++|++.+++++.....- .|..
T Consensus 73 ~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~-----~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g-----~tpl 142 (179)
T 3f6q_A 73 DTPLHLAASHGHRDIVQKLLQYKADINAVNE-----HGNVPLHYACFWGQDQVAEDLVANGALVSICNKYG-----EMPV 142 (179)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT-----TSCCHHHHHHHTTCHHHHHHHHHTTCCSSBCCTTS-----CCGG
T ss_pred CCHHHHHHHcCCHHHHHHHHHcCCCCCccCC-----CCCCHHHHHHHcCCHHHHHHHHHCCCCcchhccCC-----CCcH
Confidence 3555555556666666666665555553333 33344444445566666666666655555222221 3444
Q ss_pred cccccCCCHHHHHHHHhhhhhccC
Q psy9003 593 HKAGLFGTPEQLKYLVDECHKAGL 616 (1276)
Q Consensus 593 ~~~~~~~~~e~~~~l~~~~~~~~~ 616 (1276)
+.|...+..+.+++|...++++|.
T Consensus 143 ~~A~~~~~~~~~~~L~~~g~~~~~ 166 (179)
T 3f6q_A 143 DKAKAPLRELLRERAEKMGQNLNR 166 (179)
T ss_dssp GGSCHHHHHHHHHHHHHTTCCCSC
T ss_pred HHHHHHHHHHHHHHHHHhhcCccc
Confidence 444455556666666666665554
|
| >4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.89 E-value=2.4e-10 Score=124.64 Aligned_cols=186 Identities=10% Similarity=-0.108 Sum_probs=126.8
Q ss_pred cccccCCChhHHHHHhhhcccc-cCCCChhhhhcccccchhccccCCHhHHHhhcccccccccCCChhhHHHHHHHHhHh
Q psy9003 384 HKAGLFGTPEQLKYLVDECHKA-GLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKA 462 (1276)
Q Consensus 384 ~~a~~~~~id~vkyLi~~~h~~-~~~~~~~~~~~~vt~lh~a~~~~~~~~~~yli~~~~~~~~~~~~e~l~~l~~~~~~~ 462 (1276)
+.+++.|+++.++.|+...-.. .-..+.++. ||||.|+..|+.++|++|+..+.|.....+....
T Consensus 81 ~~a~~~~~~~~~~~l~~~~~~~~~n~~d~~g~----T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~---------- 146 (276)
T 4hbd_A 81 HPELVRRHLVTFRAMSARLLDYVVNIADSNGN----TALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGY---------- 146 (276)
T ss_dssp CHHHHHHHHHHHHHHCHHHHHHHHTCCCTTSC----CHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSC----------
T ss_pred CHHHHHHHHHHHHHHHHHHHhhcCcCCCCCCC----CHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCC----------
Confidence 3444456666666665443221 223455677 9999999999999999999988776666554442
Q ss_pred ccCCChhhHHHhhhhhcccc-----cCCChhhhhhhhhhhhhhccCCCHHHHHHHhhhhcccccCCCHHHHHHHHhhhhh
Q psy9003 463 GLFGTPEQLKYLVDECHKAG-----LFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHK 537 (1276)
Q Consensus 463 ~~~~~~~~~~~~v~~~~~a~-----~~~~~e~~~~lv~~~~~~~~~~~~~~~~~~~t~~~~a~~~g~~e~~~~lv~~~~~ 537 (1276)
|..|.|. ..+.++.+++|++.+...+.... ...|+.+.|+..|+++++++|++.+++
T Consensus 147 -------------tpL~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~-----~g~tpLh~A~~~g~~~~v~~Ll~~gad 208 (276)
T 4hbd_A 147 -------------SPIMLTALATLKTQDDIETVLQLFRLGNINAKASQ-----AGQTALMLAVSHGRVDVVKALLACEAD 208 (276)
T ss_dssp -------------CHHHHGGGCCCCSHHHHHHHHHHHHHSCTTCCCTT-----TCCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred -------------CHHHHHHHHHhhhhhhHHHHHHHHHcCCCccccCC-----CCCCHHHHHHHcCCHHHHHHHHhCCCC
Confidence 2333333 55667777777777755554332 346788888888999999999988888
Q ss_pred cCCCCCcchhhhhhhhhhccccCCCHHHHHHHHH-hhhhccCCCChhhhhhhhhhhcccccCCCHHHHHHHHhhh
Q psy9003 538 AGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVD-ECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDEC 611 (1276)
Q Consensus 538 ~~~~~t~~~l~~~~~~~~~~~~~~~~e~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~ 611 (1276)
+|..+. +.-|..+.|...|+.+.+++|++ .++++|.....- .|..+-|...|+.|.+++|++..
T Consensus 209 ~n~~d~-----~G~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g-----~TpL~~A~~~g~~~iv~~Ll~~~ 273 (276)
T 4hbd_A 209 VNVQDD-----DGSTALMCACEHGHKEIAGLLLAVPSCDISLTDRDG-----STALMVALDAGQSEIASMLYSRM 273 (276)
T ss_dssp TTCCCT-----TSCCHHHHHHHHTCHHHHHHHHTSTTCCTTCCCTTS-----CCHHHHHHHHTCHHHHHHHHHHC
T ss_pred CCCCCC-----CCCCHHHHHHHCCCHHHHHHHHhcCCCCCcCcCCCC-----CCHHHHHHHcCCHHHHHHHHhcc
Confidence 776554 45566666778888888888888 788877433322 45556666788888888888653
|
| >1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 | Back alignment and structure |
|---|
Probab=98.88 E-value=3.9e-10 Score=125.96 Aligned_cols=236 Identities=12% Similarity=-0.037 Sum_probs=134.8
Q ss_pred hHHHHHHHhhhhccCCCCCccccchhhhhhcccccCCCHHHHHHHhhhhhccCCCCcccchhhhh---------------
Q psy9003 278 PEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLV--------------- 342 (1276)
Q Consensus 278 ie~~~yli~e~~~~~~~~~~~~~t~~~~~~~~a~~~gsi~~l~~Lv~~~~~~~~~~~~~~~~~~~--------------- 342 (1276)
-|+|+||++.- .+....++.+.+.. .|++++|++|++..-..+.+ .+.-++.
T Consensus 32 ~dlv~~ll~~g-a~i~~~~~~g~~~~---------~g~~~~v~~Ll~~g~~~~~~---~~~~a~~~~~~~~~~~~~~~~~ 98 (327)
T 1sw6_A 32 HDLTSDFLSSP-LKIMKALPSPVVND---------NEQKMKLEAFLQRLLFPEIQ---EMPTSLNNDSSNRNSEGGSSNQ 98 (327)
T ss_dssp TTCCCSTTTSS-CCCEECBCCCCCCC---------HHHHHHHHHHHHHHHC-----------------------------
T ss_pred CchHHHHhhCC-cccccCCCCCCccc---------CchhHHHHHHHHhccCCccc---cchHhhhcccccccccccCCcc
Confidence 45677777742 33333333444443 38899999998776543221 1111100
Q ss_pred ccccccccCCChhhhHHhhhhhccccC--CCChhhHHHHHhhhcccccCCChhHHHHHhhhcccccCCCChhhhhccccc
Q psy9003 343 DECHKAGLFGTPEQLKYLVDECHKAGL--FGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDE 420 (1276)
Q Consensus 343 ~~~~~a~~~g~ie~~~yLi~~~h~~~~--~~~~e~~~~~~~~~~~a~~~~~id~vkyLi~~~h~~~~~~~~~~~~~~vt~ 420 (1276)
...+.++..+..+++++|++....++. +....+.. +.|...|++|+|++|+... .++-..+.++. ||
T Consensus 99 ~~~~~a~~~~~~~~~~~l~~~g~dvn~~~d~~g~TpL------h~Aa~~g~~~~v~~Ll~~G-ad~n~~d~~g~----Tp 167 (327)
T 1sw6_A 99 QQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPL------HWLTSIANLELVKHLVKHG-SNRLYGDNMGE----SC 167 (327)
T ss_dssp -----CHHHHHHHHHHHCTTSCCCSCSCCSTTCCCHH------HHHHHTTCHHHHHHHHHTT-CCTTBCCTTCC----CH
T ss_pred chhHHHHHhhHHHHHHHHHhcCCCcccccCCCCCcHH------HHHHHcCCHHHHHHHHHcC-CCCCCcCCCCC----CH
Confidence 112456666677888888776544443 22333333 3334468999999999864 56667788888 99
Q ss_pred chhccccCC---HhHHHhhcccccccccCCChhhHHHHHHHHhHhccCCChhhHHHhhhhhccccc----CCChhhhhhh
Q psy9003 421 CHKAGLFGT---PEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGL----FGTPEQLKYL 493 (1276)
Q Consensus 421 lh~a~~~~~---~~~~~yli~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~~~~~~~v~~~~~a~~----~~~~e~~~~l 493 (1276)
||.|+..|+ .++++.|+...-......+... .|..|.|.. .|..|.+++|
T Consensus 168 Lh~A~~~g~~~~~~~~~~ll~~~~~~~~~~d~~g-----------------------~tpLh~A~~~~~~~g~~~~v~~L 224 (327)
T 1sw6_A 168 LVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMN-----------------------RTILHHIIITSGMTGCSAAAKYY 224 (327)
T ss_dssp HHHHHHSSHHHHTTCHHHHHHHHGGGGGEECTTC-----------------------CCHHHHHHHHHTSTTCHHHHHHH
T ss_pred HHHHHHhcccccHHHHHHHHHhhhccccCCCCCC-----------------------CCHHHHHHHHccccccHHHHHHH
Confidence 999998888 4555555543322222222222 244444443 5555555555
Q ss_pred hhhhhh--------------------hccCCCHHHHHHHhhhhcccccCCCHHHHHHHHhhhhhcCCCCCcchhhhhhhh
Q psy9003 494 VDECHK--------------------AGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDE 553 (1276)
Q Consensus 494 v~~~~~--------------------~~~~~~~~~~~~~~t~~~~a~~~g~~e~~~~lv~~~~~~~~~~t~~~l~~~~~~ 553 (1276)
++.... +|... ....|+.+.|+. +++|++. ++|..+. ..-|.
T Consensus 225 l~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~-----~~g~t~L~~a~~------~~~Ll~~--~~n~~d~-----~G~Tp 286 (327)
T 1sw6_A 225 LDILMGWIVKKQNRPIQSGTNEKESKPNDKN-----GERKDSILENLD------LKWIIAN--MLNAQDS-----NGDTC 286 (327)
T ss_dssp HHHHHHHHHHGGGCCEEEC---------------------CHHHHHCS------HHHHHHH--TTTCCCT-----TSCCH
T ss_pred HHHHHHHHhcccchHHHhhhhcccCCccccc-----ccCCChhHHHHH------HHHHHHh--CCCCCCC-----CCCCH
Confidence 555432 22221 133677777775 8888876 4554333 45566
Q ss_pred hhccccCCCHHHHHHHHHhhhhccC
Q psy9003 554 CHKAGLFGTPEQLKYLVDECHKAGL 578 (1276)
Q Consensus 554 ~~~~~~~~~~e~~~~l~~~~~~~~~ 578 (1276)
.|.|...|+.|.+++|++.++++|.
T Consensus 287 Lh~A~~~g~~~~v~~Ll~~Gad~~~ 311 (327)
T 1sw6_A 287 LNIAARLGNISIVDALLDYGADPFI 311 (327)
T ss_dssp HHHHHHHCCHHHHHHHHHTTCCTTC
T ss_pred HHHHHHcCCHHHHHHHHHcCCCCcc
Confidence 7777799999999999999999983
|
| >3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A* | Back alignment and structure |
|---|
Probab=98.87 E-value=1.3e-09 Score=115.94 Aligned_cols=205 Identities=14% Similarity=-0.011 Sum_probs=135.3
Q ss_pred hhhcccccCCChhhhhhhhhhhhhhccCCCHHHH---HHHhhhhcccc---cCCCHHHHHHHHhhhhhcCC---------
Q psy9003 476 DECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQL---KYLVDECHKAG---LFGTPEQLKYLVDECHKAGL--------- 540 (1276)
Q Consensus 476 ~~~~~a~~~~~~e~~~~lv~~~~~~~~~~~~~~~---~~~~t~~~~a~---~~g~~e~~~~lv~~~~~~~~--------- 540 (1276)
+..|.|...|++|.++.|++...+.+...+.... +...|+.+.|. ..|+++++++|++.+++.+.
T Consensus 7 ~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~ 86 (260)
T 3jxi_A 7 PILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPF 86 (260)
T ss_dssp HHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCB
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhcccc
Confidence 5678888899999877777744333332322111 23467777766 78999999999999987441
Q ss_pred CCCcchhhhhhhhhhccccCCCHHHHHHHHHhhhhccCCCChhhh---------hhhhhhhcccccCCCHHHHHHHHh--
Q psy9003 541 FGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQL---------KYLVDECHKAGLFGTPEQLKYLVD-- 609 (1276)
Q Consensus 541 ~~t~~~l~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~e~~~~l~~-- 609 (1276)
+..+ ...-|..+.|+..|++|.+++|++.++++|.......+ ....|..+-|...|++|.+++|++
T Consensus 87 ~~~d---~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~ 163 (260)
T 3jxi_A 87 RDVY---YRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENG 163 (260)
T ss_dssp CCSS---EESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCS
T ss_pred cccc---cCCCCHHHHHHHcCCHHHHHHHHhCCCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhcc
Confidence 2111 24456667777999999999999999988843311000 113456666678999999999999
Q ss_pred -hhhhccCCCChhhhhhhHHHhhhccCCCC---------HHHHHHHHHHHHhhcCCCChHHH--hhhhhhhhhcccCCCh
Q psy9003 610 -ECHKAGLFGTPEQLKYLVDECHKAGLFGT---------PEQLKYLVDECHKAGLFGTPEQL--KYLVDECHKAGLFGTP 677 (1276)
Q Consensus 610 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 677 (1276)
.++++|.+-..- .+++|-|..+|. .+.+++|++.-...+.......+ ++-.+++|.|..+|+.
T Consensus 164 ~~ga~~~~~d~~g-----~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~ 238 (260)
T 3jxi_A 164 HKQADLRRQDSRG-----NTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKI 238 (260)
T ss_dssp SCCCCTTCCCTTS-----CCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCH
T ss_pred ccCCCCcccCCCC-----CcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhcccCCCCCHHHHHHHcCCH
Confidence 888887654433 566666665555 67788888766554221111111 1223478888888888
Q ss_pred hHHHHHHHHHH
Q psy9003 678 EQLKYLVDECH 688 (1276)
Q Consensus 678 ~~~~~~~~~~~ 688 (1276)
|++++|++.-.
T Consensus 239 ~~v~~Ll~~g~ 249 (260)
T 3jxi_A 239 GIFQHIIRREI 249 (260)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHhCC
Confidence 88888887433
|
| >1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A | Back alignment and structure |
|---|
Probab=98.86 E-value=1.2e-09 Score=107.71 Aligned_cols=147 Identities=18% Similarity=0.102 Sum_probs=74.9
Q ss_pred cCCChhHHHHHhhhcccccCCCChhhhhcccccchhccccCCHhHHHhhcccccccccCCChhhHHHHHHHHhHhccCCC
Q psy9003 388 LFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGT 467 (1276)
Q Consensus 388 ~~~~id~vkyLi~~~h~~~~~~~~~~~~~~vt~lh~a~~~~~~~~~~yli~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~ 467 (1276)
..|++++|++|+.. ..++-..+..+. |+||.|+. |+.+++++|+..+. .+...+ .
T Consensus 14 ~~g~~~~v~~Ll~~-~~~~~~~~~~g~----t~L~~A~~-~~~~~v~~Ll~~g~-~~~~~~------------------~ 68 (162)
T 1ihb_A 14 ARGDLEQLTSLLQN-NVNVNAQNGFGR----TALQVMKL-GNPEIARRLLLRGA-NPDLKD------------------R 68 (162)
T ss_dssp HHTCHHHHHHHTTS-CCCTTCCCTTSC----CHHHHCCS-SCHHHHHHHHHTTC-CTTCCC------------------T
T ss_pred HcCCHHHHHHHHhC-CCCccccCccCc----cHHHHHHc-CcHHHHHHHHHcCC-CCCCCC------------------C
Confidence 34666666666642 233333444555 77777776 77777777765431 111111 1
Q ss_pred hhhHHHhhhhhcccccCCChhhhhhhhhhhhhhccCCCHHHHHHHhhhhcccccCCCHHHHHHHHhhhhh-cCCCCCcch
Q psy9003 468 PEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHK-AGLFGTPEQ 546 (1276)
Q Consensus 468 ~~~~~~~v~~~~~a~~~~~~e~~~~lv~~~~~~~~~~~~~~~~~~~t~~~~a~~~g~~e~~~~lv~~~~~-~~~~~t~~~ 546 (1276)
.. .|..|.|...|..|.+++|++...++|.... ...|+.+.|+..|+++++++|++.+.+ ++..+.
T Consensus 69 ~g-----~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~-----~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~--- 135 (162)
T 1ihb_A 69 TG-----FAVIHDAARAGFLDTLQTLLEFQADVNIEDN-----EGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNH--- 135 (162)
T ss_dssp TS-----CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCT-----TSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCT---
T ss_pred CC-----CCHHHHHHHcCCHHHHHHHHHcCCCCCCcCC-----CCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCC---
Confidence 11 3444555555555555555555555444332 234555666666666666666665554 233222
Q ss_pred hhhhhhhhhccccCCCHHHHHHHHHhhh
Q psy9003 547 LKYLVDECHKAGLFGTPEQLKYLVDECH 574 (1276)
Q Consensus 547 l~~~~~~~~~~~~~~~~e~~~~l~~~~~ 574 (1276)
..-|..+.|...|+.|.+++|++.++
T Consensus 136 --~g~t~l~~A~~~~~~~~~~~Ll~~GA 161 (162)
T 1ihb_A 136 --KGDTACDLARLYGRNEVVSLMQANGA 161 (162)
T ss_dssp --TSCCHHHHHHHTTCHHHHHHHHHTC-
T ss_pred --CCCcHHHHHHHcCCHHHHHHHHHhCC
Confidence 22333444445566666666655554
|
| >2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* | Back alignment and structure |
|---|
Probab=98.86 E-value=1.2e-09 Score=117.40 Aligned_cols=206 Identities=13% Similarity=-0.031 Sum_probs=141.7
Q ss_pred hhhhcccccCCChhhhhhhhhhhhhhccCCCHHHH---HHHhhhhcccccC---CCHHHHHHHHhhhhhc-------CCC
Q psy9003 475 VDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQL---KYLVDECHKAGLF---GTPEQLKYLVDECHKA-------GLF 541 (1276)
Q Consensus 475 v~~~~~a~~~~~~e~~~~lv~~~~~~~~~~~~~~~---~~~~t~~~~a~~~---g~~e~~~~lv~~~~~~-------~~~ 541 (1276)
.|..|.|..+|++|.+++|++...+.+..++.... +...|+.+.|+.. |++|++++|++.+++. |..
T Consensus 14 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~~i~~~ 93 (273)
T 2pnn_A 14 RRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNAS 93 (273)
T ss_dssp HHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHHHHTCC
T ss_pred chHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchhHHhhcc
Confidence 57889999999999999999876655544332111 1347888889876 9999999999999874 321
Q ss_pred CCcchhhhhhhhhhccccCCCHHHHHHHHHhhhhccCCCChhhh---------hhhhhhhcccccCCCHHHHHHHHh---
Q psy9003 542 GTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQL---------KYLVDECHKAGLFGTPEQLKYLVD--- 609 (1276)
Q Consensus 542 ~t~~~l~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~e~~~~l~~--- 609 (1276)
..+ .=.+.-|..+.|+..|++|.+++|++.++++|.......+ ....|..+-|...|++|.+++|++
T Consensus 94 ~~~-~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~ 172 (273)
T 2pnn_A 94 YTD-SYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSW 172 (273)
T ss_dssp CCS-TTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSS
T ss_pred ccc-ccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccc
Confidence 111 1135667778888999999999999999998843321000 013466666778999999999999
Q ss_pred hhhhccCCCChhhhhhhHHHhhhccCCCC---------HHHHHHHHHHHHhhcCCCChHHH--hhhhhhhhhcccCCChh
Q psy9003 610 ECHKAGLFGTPEQLKYLVDECHKAGLFGT---------PEQLKYLVDECHKAGLFGTPEQL--KYLVDECHKAGLFGTPE 678 (1276)
Q Consensus 610 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 678 (1276)
.++++|.+-..- .++++-|...|+ .+.+++|++.-...+.......+ ++-.+++|.|..+|+.|
T Consensus 173 ~gad~~~~d~~g-----~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~~A~~~g~~~ 247 (273)
T 2pnn_A 173 QPADISARDSVG-----NTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIG 247 (273)
T ss_dssp CCCCTTCCCTTS-----CCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHH
T ss_pred CCCCceeeCCCC-----CcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhcccccccccccCCCCCCHHHHHHHhChHH
Confidence 888887654433 566666666666 67888888766654321111001 12235788888888888
Q ss_pred HHHHHHHH
Q psy9003 679 QLKYLVDE 686 (1276)
Q Consensus 679 ~~~~~~~~ 686 (1276)
++++|++.
T Consensus 248 iv~~Ll~~ 255 (273)
T 2pnn_A 248 VLAYILQR 255 (273)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHC
Confidence 88888873
|
| >3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A | Back alignment and structure |
|---|
Probab=98.86 E-value=8.3e-10 Score=111.44 Aligned_cols=155 Identities=12% Similarity=-0.011 Sum_probs=118.4
Q ss_pred ccccCCChhHHHHHhhhcccccCCCChhhhhcccccchhccccCCHhHHHhhcccccccccCCChhhHHHHHHHHhHhcc
Q psy9003 385 KAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGL 464 (1276)
Q Consensus 385 ~a~~~~~id~vkyLi~~~h~~~~~~~~~~~~~~vt~lh~a~~~~~~~~~~yli~~~~~~~~~~~~e~l~~l~~~~~~~~~ 464 (1276)
.|...|++++|++|+...-.++-..+..+. |+||.|+..|+.++|++|+..+- .+...+
T Consensus 11 ~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~----t~L~~A~~~~~~~~v~~Ll~~g~-~~~~~~---------------- 69 (179)
T 3f6q_A 11 TQCREGNAVAVRLWLDNTENDLNQGDDHGF----SPLHWACREGRSAVVEMLIMRGA-RINVMN---------------- 69 (179)
T ss_dssp HHHHHTCHHHHHHHHHCTTSCTTCCCTTSC----CHHHHHHHTTCHHHHHHHHHTTC-CTTCCC----------------
T ss_pred HHHHcCCHHHHHHHHhcCcccccccCCCCC----CHHHHHHHcCcHHHHHHHHHcCC-CCCCcC----------------
Confidence 344468888888888877766666777777 99999999999999999886642 111111
Q ss_pred CCChhhHHHhhhhhcccccCCChhhhhhhhhhhhhhccCCCHHHHHHHhhhhcccccCCCHHHHHHHHhhhhhcCCCCCc
Q psy9003 465 FGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTP 544 (1276)
Q Consensus 465 ~~~~~~~~~~v~~~~~a~~~~~~e~~~~lv~~~~~~~~~~~~~~~~~~~t~~~~a~~~g~~e~~~~lv~~~~~~~~~~t~ 544 (1276)
... .|..|.|..+|..|.+++|++...++|.... ...|+.+.|+..|+.+++++|++.+++++.-+.
T Consensus 70 --~~g-----~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~-----~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~- 136 (179)
T 3f6q_A 70 --RGD-----DTPLHLAASHGHRDIVQKLLQYKADINAVNE-----HGNVPLHYACFWGQDQVAEDLVANGALVSICNK- 136 (179)
T ss_dssp --TTC-----CCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT-----TSCCHHHHHHHTTCHHHHHHHHHTTCCSSBCCT-
T ss_pred --CCC-----CCHHHHHHHcCCHHHHHHHHHcCCCCCccCC-----CCCCHHHHHHHcCCHHHHHHHHHCCCCcchhcc-
Confidence 111 4677888888888889999888888776554 456888999999999999999999888876555
Q ss_pred chhhhhhhhhhccccCCCHHHHHHHHHhhhhcc
Q psy9003 545 EQLKYLVDECHKAGLFGTPEQLKYLVDECHKAG 577 (1276)
Q Consensus 545 ~~l~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~ 577 (1276)
+.-|..+.|...++.+.+++|.+.++++|
T Consensus 137 ----~g~tpl~~A~~~~~~~~~~~L~~~g~~~~ 165 (179)
T 3f6q_A 137 ----YGEMPVDKAKAPLRELLRERAEKMGQNLN 165 (179)
T ss_dssp ----TSCCGGGGSCHHHHHHHHHHHHHTTCCCS
T ss_pred ----CCCCcHHHHHHHHHHHHHHHHHHhhcCcc
Confidence 44566667778888999999999999888
|
| >3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* | Back alignment and structure |
|---|
Probab=98.85 E-value=1.8e-09 Score=107.15 Aligned_cols=121 Identities=15% Similarity=0.079 Sum_probs=67.1
Q ss_pred hhhcccccCCChhhhhhhhhhhhhhccCCCHHHHHHHhhhhcccccCCCHHHHHHHHhhhhhcCCCCCcchhhhhhhhhh
Q psy9003 476 DECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECH 555 (1276)
Q Consensus 476 ~~~~~a~~~~~~e~~~~lv~~~~~~~~~~~~~~~~~~~t~~~~a~~~g~~e~~~~lv~~~~~~~~~~t~~~l~~~~~~~~ 555 (1276)
|..|.|...|..|.+++|++...+++.... ...|+.+.|+..|+++++++|++.+.++|..+. +.-|..+
T Consensus 44 t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~-----~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~-----~g~t~L~ 113 (165)
T 3twr_A 44 TPLHFAAGYNRVSVVEYLLQHGADVHAKDK-----GGLVPLHNACSYGHYEVAELLVKHGAVVNVADL-----WKFTPLH 113 (165)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTTCCTTCCCT-----TSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT-----TCCCHHH
T ss_pred CHHHHHHHcChHHHHHHHHhcCCCCCccCC-----CCCCHHHHHHHcCcHHHHHHHHhCCCCCCCcCC-----CCCCHHH
Confidence 444445555555555555555544443332 234666667777777777777776666664443 3344455
Q ss_pred ccccCCCHHHHHHHHHhhhhccCCCChhhhhhhhhhhcccccCCCHHHHHHHHhhhh
Q psy9003 556 KAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECH 612 (1276)
Q Consensus 556 ~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~ 612 (1276)
.|...|+.|.+++|++.+++++...... .|..+-|.. |+.|.+++|.+.++
T Consensus 114 ~A~~~~~~~~v~~Ll~~ga~~~~~~~~g-----~t~l~~a~~-~~~~i~~~L~~~gA 164 (165)
T 3twr_A 114 EAAAKGKYEICKLLLQHGADPTKKNRDG-----NTPLDLVKD-GDTDIQDLLRGDAA 164 (165)
T ss_dssp HHHHTTCHHHHHHHHHTTCCTTCCCTTS-----CCTGGGSCT-TCHHHHHHHHTC--
T ss_pred HHHHcCCHHHHHHHHHcCCCCcccCCCC-----CChhHhHhc-CChHHHHHHhhccc
Confidence 5556777777777777766666322221 233333333 66677777766543
|
| >3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A | Back alignment and structure |
|---|
Probab=98.83 E-value=2e-09 Score=106.96 Aligned_cols=161 Identities=12% Similarity=-0.041 Sum_probs=114.8
Q ss_pred ccchhccccCCHhHHHhhcccccccccCCChhhHHHHHHHHhHhccCCChhhHHHhhhhhcccccCCChhhhhhhhhhhh
Q psy9003 419 DECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECH 498 (1276)
Q Consensus 419 t~lh~a~~~~~~~~~~yli~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~~~~~~~v~~~~~a~~~~~~e~~~~lv~~~~ 498 (1276)
|+||.|+..|+.++|++|+..+ ......+ ... .|..|.|...|+.|.+++|++...
T Consensus 5 t~L~~A~~~g~~~~v~~ll~~~-~~~~~~~------------------~~g-----~t~L~~A~~~~~~~~v~~Ll~~g~ 60 (167)
T 3v31_A 5 LSVHQLAAQGEMLYLATRIEQE-NVINHTD------------------EEG-----FTPLMWAAAHGQIAVVEFLLQNGA 60 (167)
T ss_dssp CCHHHHHHTTCHHHHHHHHHHS-SCTTCCC------------------TTS-----CCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred chHHHHHHCCCHHHHHHHHHcC-CCcCCCC------------------CCC-----CCHHHHHHHCCCHHHHHHHHHcCC
Confidence 8999999999999999998764 2211111 111 466777778888888888888877
Q ss_pred hhccCCCHHHHHHHhhhhcccccCCCHHHHHHHHhhhhhcCCCCCcchhhhhhhhhhccccCCCHHHHHHHHHhhhhccC
Q psy9003 499 KAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGL 578 (1276)
Q Consensus 499 ~~~~~~~~~~~~~~~t~~~~a~~~g~~e~~~~lv~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~ 578 (1276)
+++.... ...|+.+.|+..|+++++++|++.+.+++..+. ...|..+.|...|++|.+++|++.+++++.
T Consensus 61 ~~~~~~~-----~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~-----~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~ 130 (167)
T 3v31_A 61 DPQLLGK-----GRESALSLACSKGYTDIVKMLLDCGVDVNEYDW-----NGGTPLLYAVHGNHVKCVKMLLESGADPTI 130 (167)
T ss_dssp CTTCCCT-----TCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCT-----TSCCHHHHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred CCCCcCC-----CCCcHHHHHHHcCCHHHHHHHHHCCCCCCcCCC-----CCCCHHHHHHHcCCHHHHHHHHHcCCCCCC
Confidence 7765443 345778888888899999999988877775444 344555666688888999999888887773
Q ss_pred CCChhhhhhhhhhhcccccCCCHHHHHHHHhhhhhccCCC
Q psy9003 579 FGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFG 618 (1276)
Q Consensus 579 ~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~ 618 (1276)
.... ..|..+-|...|+.+.+++|.+.+.++-.+.
T Consensus 131 ~~~~-----g~t~l~~A~~~~~~~~~~~L~~~~~~~~~~~ 165 (167)
T 3v31_A 131 ETDS-----GYNSMDLAVALGYRSVQQVIESHLLKLLQNI 165 (167)
T ss_dssp CCTT-----SCCHHHHHHHHTCHHHHHHHHHHHHHHCSSC
T ss_pred cCCC-----CCCHHHHHHHcCcHHHHHHHHHHHHHHHHHh
Confidence 3222 2455555667888888888888888775443
|
| >2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* | Back alignment and structure |
|---|
Probab=98.82 E-value=1.5e-09 Score=108.78 Aligned_cols=153 Identities=14% Similarity=0.072 Sum_probs=104.5
Q ss_pred ccchhccccCCHhHHHhhcccccccccCCChhhHHHHHHHHhHhccCCChhhHHHhhhhhcccccCCChhhhhhhhhhhh
Q psy9003 419 DECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECH 498 (1276)
Q Consensus 419 t~lh~a~~~~~~~~~~yli~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~~~~~~~v~~~~~a~~~~~~e~~~~lv~~~~ 498 (1276)
|++|.|+..|+.++|++|+..+.. .... +... .|..|.|...|+.|.+++|++...
T Consensus 16 ~~l~~A~~~g~~~~v~~Ll~~g~~-~~~~------------------~~~g-----~t~L~~A~~~~~~~~v~~Ll~~g~ 71 (169)
T 2y1l_E 16 KKLLEAARAGRDDEVRILMANGAD-VNAE------------------DASG-----WTPLHLAAFNGHLEIVEVLLKNGA 71 (169)
T ss_dssp HHHHHHHHHTCHHHHHHHHHTTCC-TTCC------------------CTTS-----CCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred chHHHHHHcCCHHHHHHHHHCCCC-CCCC------------------CCCC-----CCHHHHHHHcCCHHHHHHHHHcCC
Confidence 888999988999998888876421 1111 1111 466677777788888888887776
Q ss_pred hhccCCCHHHHHHHhhhhcccccCCCHHHHHHHHhhhhhcCCCCCcchhhhhhhhhhccccCCCHHHHHHHHHhhhhccC
Q psy9003 499 KAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGL 578 (1276)
Q Consensus 499 ~~~~~~~~~~~~~~~t~~~~a~~~g~~e~~~~lv~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~ 578 (1276)
+++.... ...|..+.|+..|+++++++|++.+++++..+. ..-|..+.|...|+++.+++|++.+++++.
T Consensus 72 ~~~~~~~-----~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~-----~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~ 141 (169)
T 2y1l_E 72 DVNAVDH-----AGMTPLRLAALFGHLEIVEVLLKNGADVNANDM-----EGHTPLHLAAMFGHLEIVEVLLKNGADVNA 141 (169)
T ss_dssp CTTCCCT-----TSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT-----TSCCHHHHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred CCCccCC-----CCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCC-----CCCCHHHHHHHcCCHHHHHHHHHcCCCCCC
Confidence 6665443 346777888888888888888887777765444 344555666678888888888888877763
Q ss_pred CCChhhhhhhhhhhcccccCCCHHHHHHHHhh
Q psy9003 579 FGTPEQLKYLVDECHKAGLFGTPEQLKYLVDE 610 (1276)
Q Consensus 579 ~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~ 610 (1276)
.... ..|..+-|...|+.+.+++|.+.
T Consensus 142 ~~~~-----g~t~l~~A~~~~~~~~~~~L~~~ 168 (169)
T 2y1l_E 142 QDKF-----GKTAFDISIDNGNEDLAEILQKL 168 (169)
T ss_dssp CCTT-----SCCHHHHHHHTTCHHHHHHHHTC
T ss_pred cCCC-----CCCHHHHHHHhCCHHHHHHHHHc
Confidence 3222 14555556677888888888764
|
| >3aie_A Glucosyltransferase-SI; beta-alpha-barrels; HET: MES; 2.10A {Streptococcus mutans} PDB: 3aic_A* 3aib_A* | Back alignment and structure |
|---|
Probab=98.81 E-value=1.5e-09 Score=136.56 Aligned_cols=105 Identities=18% Similarity=0.185 Sum_probs=81.2
Q ss_pred HHHHHHcCCEEEEEEec-cccCC-cccCCCcCCCC---CCCcccccCCCCCCCCCCCcCCCCCcHHHHHHHHHHHHHHHH
Q psy9003 1043 VDECHKAGLYVLLDVVH-SHASK-NVLDGLNEFDG---TQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSNLRWYLD 1117 (1276)
Q Consensus 1043 V~alHk~GI~VILDvV~-NHt~~-~~~~~~~~f~g---~~~~Yy~~~~~g~~~~W~g~~LN~~np~Vr~~Iidsl~~Wv~ 1117 (1276)
.++.|++|+.+|||.|+ ||++. .- .++. ...++|+. .++||++||+||++|+++++||++
T Consensus 151 ~~~~~~~s~~~~l~~~p~n~~G~~~W-----~~~~~~e~g~y~l~~----------~~DLN~~NP~Vr~~l~~~~~~Wl~ 215 (844)
T 3aie_A 151 KLTSQANSNYRILNRTPTNQTGKKDP-----RYTADRTIGGYEFLL----------ANDVDNSNPVVQAEQLNWLHFLMN 215 (844)
T ss_dssp GGGGGGCCSCCCCCCCSTTTTSSCCT-----TCCSSCSCSCCSCCS----------SEEECTTSHHHHHHHHHHHHHHHT
T ss_pred cccccccCceEecccccccccCCccc-----eeccccccCceeeCC----------ccccCCCCHHHHHHHHHHHHHHhh
Confidence 44689999999999987 88776 21 1111 11222221 368999999999999999999999
Q ss_pred ---------hCCCcEEccCCccccccccCCCCCCCCCCCccccCCCCCchHHHHHHHHHHHHHhhC-C--------CeEE
Q psy9003 1118 ---------EYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKY-P--------EIIT 1179 (1276)
Q Consensus 1118 ---------eygVDGFRfD~a~~L~~~d~g~g~~~~~~~~~~~~~~~d~~a~~Fl~el~~~Vr~~~-P--------dvil 1179 (1276)
++||||||+|++.+|. ..||+++++.+++.. | ++++
T Consensus 216 ~~~i~~~~~~~GIDGFRlDAvkhv~--------------------------~df~~~~~~~l~~~~~~~~~~~~~~d~~~ 269 (844)
T 3aie_A 216 FGNIYANDPDANFDSIRVDAVDNVD--------------------------ADLLQIAGDYLKAAKGIHKNDKAANDHLS 269 (844)
T ss_dssp HHHHHHSCTTSCCCEEEETTGGGSC--------------------------THHHHHHHHHHHHHHCTTTBHHHHHTSCC
T ss_pred ccccccccccCCCCEEEEehhhcCC--------------------------HHHHHHHHHHHHHHhcccccccccCCeEE
Confidence 8999999999999883 248888888887753 5 7899
Q ss_pred EEEccCCCC
Q psy9003 1180 IAEDVSGMP 1188 (1276)
Q Consensus 1180 IAE~~s~~p 1188 (1276)
|||.|...+
T Consensus 270 VGEvw~~~~ 278 (844)
T 3aie_A 270 ILEAWSYND 278 (844)
T ss_dssp EECCCSTTH
T ss_pred EEecCCCCh
Confidence 999987754
|
| >3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* | Back alignment and structure |
|---|
Probab=98.79 E-value=3e-09 Score=105.50 Aligned_cols=150 Identities=16% Similarity=0.051 Sum_probs=106.3
Q ss_pred cccCCChhHHHHHhhhcccccCCCChhhhhcccccchhccccCCHhHHHhhcccccccccCCChhhHHHHHHHHhHhccC
Q psy9003 386 AGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLF 465 (1276)
Q Consensus 386 a~~~~~id~vkyLi~~~h~~~~~~~~~~~~~~vt~lh~a~~~~~~~~~~yli~~~~~~~~~~~~e~l~~l~~~~~~~~~~ 465 (1276)
|+..|++++|++|+.....++...+..+. |+||.|+..|+.++|++|+..+.- ++..
T Consensus 15 A~~~g~~~~v~~ll~~~~~~~~~~~~~g~----t~L~~A~~~~~~~~v~~Ll~~g~~-------------------~~~~ 71 (165)
T 3twr_A 15 AAKAGDVETVKKLCTVQSVNCRDIEGRQS----TPLHFAAGYNRVSVVEYLLQHGAD-------------------VHAK 71 (165)
T ss_dssp HHHHTCHHHHHHHCCTTTTTCCCTTTTCC----CHHHHHHHTTCHHHHHHHHHTTCC-------------------TTCC
T ss_pred HHHhCCHHHHHHHHHcCCCCccccccCCC----CHHHHHHHcChHHHHHHHHhcCCC-------------------CCcc
Confidence 34457888888888776655556666677 999999988999999988875321 1111
Q ss_pred CChhhHHHhhhhhcccccCCChhhhhhhhhhhhhhccCCCHHHHHHHhhhhcccccCCCHHHHHHHHhhhhhcCCCCCcc
Q psy9003 466 GTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPE 545 (1276)
Q Consensus 466 ~~~~~~~~~v~~~~~a~~~~~~e~~~~lv~~~~~~~~~~~~~~~~~~~t~~~~a~~~g~~e~~~~lv~~~~~~~~~~t~~ 545 (1276)
+... .|..|.|..+|..|.+++|++...++|.... ...|+.+.|+..|+++++++|++.+++++..+.
T Consensus 72 ~~~g-----~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~-----~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~-- 139 (165)
T 3twr_A 72 DKGG-----LVPLHNACSYGHYEVAELLVKHGAVVNVADL-----WKFTPLHEAAAKGKYEICKLLLQHGADPTKKNR-- 139 (165)
T ss_dssp CTTS-----CCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT-----TCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT--
T ss_pred CCCC-----CCHHHHHHHcCcHHHHHHHHhCCCCCCCcCC-----CCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCC--
Confidence 1112 4677888888888888888888887776554 346888889999999999999998888875554
Q ss_pred hhhhhhhhhhccccCCCHHHHHHHHHhhh
Q psy9003 546 QLKYLVDECHKAGLFGTPEQLKYLVDECH 574 (1276)
Q Consensus 546 ~l~~~~~~~~~~~~~~~~e~~~~l~~~~~ 574 (1276)
+.-|..+-|.. |+.|.+++|.+.++
T Consensus 140 ---~g~t~l~~a~~-~~~~i~~~L~~~gA 164 (165)
T 3twr_A 140 ---DGNTPLDLVKD-GDTDIQDLLRGDAA 164 (165)
T ss_dssp ---TSCCTGGGSCT-TCHHHHHHHHTC--
T ss_pred ---CCCChhHhHhc-CChHHHHHHhhccc
Confidence 33333444434 88899999987664
|
| >2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} | Back alignment and structure |
|---|
Probab=98.79 E-value=2e-09 Score=109.57 Aligned_cols=160 Identities=13% Similarity=0.015 Sum_probs=108.3
Q ss_pred CChhhhhcccccchhccccCCHhHHHhhcccccccccCCChhhHHHHHHHHhHhccCCChhhHHHhhhhhcccccCCChh
Q psy9003 409 GTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPE 488 (1276)
Q Consensus 409 ~~~~~~~~~vt~lh~a~~~~~~~~~~yli~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~~~~~~~v~~~~~a~~~~~~e 488 (1276)
.+..+. ||||.|+..|+.++|++|+..+-. ++..+... .|..|.|...|+.|
T Consensus 31 ~d~~g~----t~L~~A~~~g~~~~v~~Ll~~~~~-------------------~~~~~~~g-----~t~L~~A~~~~~~~ 82 (192)
T 2rfm_A 31 RDSYNR----TPLMVACMLGMENAIDKLVENFDK-------------------LEDKDIEG-----STALIWAVKNNRLG 82 (192)
T ss_dssp CCTTCC----CHHHHHHHHTCGGGHHHHHHHHCC-------------------TTCCCTTS-----CCHHHHHHHTTCHH
T ss_pred cCCCCC----CHHHHHHHcCCHHHHHHHHHhccc-------------------cccccccC-----ccHHHHHHHcCCHH
Confidence 355566 999999999999999888865321 11111111 46677777778888
Q ss_pred hhhhhhhhhhhhccCCCHHHHHHHhhhhcccccCCCHHHHHHHHhhhhhcCCCCCcchhhhhhhhhhccccCCCHHHHHH
Q psy9003 489 QLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKY 568 (1276)
Q Consensus 489 ~~~~lv~~~~~~~~~~~~~~~~~~~t~~~~a~~~g~~e~~~~lv~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~e~~~~ 568 (1276)
.+++|++...+++.... ...|+.+.|+..|+.+++++|++.+.+++..+. ...|..+.|...|+.+.+++
T Consensus 83 ~v~~Ll~~g~~~~~~~~-----~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~-----~g~t~L~~A~~~~~~~~v~~ 152 (192)
T 2rfm_A 83 IAEKLLSKGSNVNTKDF-----SGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNL-----EGETPLIVASKYGRSEIVKK 152 (192)
T ss_dssp HHHHHHHHTCCTTCCCT-----TSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCT-----TCCCHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHCCCCCCCCCC-----CCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCC-----CCCCHHHHHHHcCCHHHHHH
Confidence 88888877777665543 346777888888888888888887777765444 34455566667788888888
Q ss_pred HHHhhhhccCCCChhhhhhhhhhhcccccCCCHHHHHHHHhhh
Q psy9003 569 LVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDEC 611 (1276)
Q Consensus 569 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~ 611 (1276)
|++.+++++.....- .|..+-|...|+.|.+++|++.+
T Consensus 153 Ll~~ga~~~~~~~~g-----~t~l~~A~~~~~~~~v~~Ll~~~ 190 (192)
T 2rfm_A 153 LLELGADISARDLTG-----LTAEASARIFGRQEVIKIFTEVR 190 (192)
T ss_dssp HHHTTCCTTCBCTTS-----CBHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHCCCCCCCcCCCC-----CCHHHHHHHhCcHHHHHHHHhcc
Confidence 888877776322221 34455555778888888887754
|
| >2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* | Back alignment and structure |
|---|
Probab=98.78 E-value=3.2e-09 Score=106.42 Aligned_cols=152 Identities=14% Similarity=0.081 Sum_probs=91.6
Q ss_pred hhhhcccccCCChhhhhhhhhhhhhhccCCCHHHHHHHhhhhcccccCCCHHHHHHHHhhhhhcCCCCCcchhhhhhhhh
Q psy9003 475 VDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDEC 554 (1276)
Q Consensus 475 v~~~~~a~~~~~~e~~~~lv~~~~~~~~~~~~~~~~~~~t~~~~a~~~g~~e~~~~lv~~~~~~~~~~t~~~l~~~~~~~ 554 (1276)
.+..+.|..+|++|.+++|++...++|.... ...|..+.|+..|+++++++|++.+.+++..+. +..|-.
T Consensus 15 ~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~-----~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~-----~g~t~L 84 (169)
T 2y1l_E 15 GKKLLEAARAGRDDEVRILMANGADVNAEDA-----SGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDH-----AGMTPL 84 (169)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHTTCCTTCCCT-----TSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT-----TSCCHH
T ss_pred cchHHHHHHcCCHHHHHHHHHCCCCCCCCCC-----CCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCC-----CCCCHH
Confidence 3556666677777777777776666654432 235666777777777777777776666554333 334445
Q ss_pred hccccCCCHHHHHHHHHhhhhccCCCChhhhhhhhhhhcccccCCCHHHHHHHHhhhhhccCCCChhhhhhhHHHhhhcc
Q psy9003 555 HKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAG 634 (1276)
Q Consensus 555 ~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 634 (1276)
+.|+..|+++.+++|++.++++|..... ..|..+.|...|++|.+++|++.+++++.+-... .++++-|.
T Consensus 85 ~~A~~~~~~~~~~~Ll~~g~~~~~~~~~-----g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g-----~t~l~~A~ 154 (169)
T 2y1l_E 85 RLAALFGHLEIVEVLLKNGADVNANDME-----GHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFG-----KTAFDISI 154 (169)
T ss_dssp HHHHHTTCHHHHHHHHHTTCCTTCCCTT-----SCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTS-----CCHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHcCCCCCCCCCC-----CCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCC-----CCHHHHHH
Confidence 5555677777777777776666632221 1344455556677777777777776665443222 34455555
Q ss_pred CCCCHHHHHHHH
Q psy9003 635 LFGTPEQLKYLV 646 (1276)
Q Consensus 635 ~~~~~~~~~~~~ 646 (1276)
..|..+.+++|+
T Consensus 155 ~~~~~~~~~~L~ 166 (169)
T 2y1l_E 155 DNGNEDLAEILQ 166 (169)
T ss_dssp HTTCHHHHHHHH
T ss_pred HhCCHHHHHHHH
Confidence 556666666664
|
| >4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.77 E-value=8.1e-10 Score=120.49 Aligned_cols=187 Identities=10% Similarity=-0.096 Sum_probs=134.8
Q ss_pred ccccccccCCChhhhHHhhhhhccccC---CCChhhHHHHHhhhcccccCCChhHHHHHhhhcccccCCCChhhhhcccc
Q psy9003 343 DECHKAGLFGTPEQLKYLVDECHKAGL---FGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVD 419 (1276)
Q Consensus 343 ~~~~~a~~~g~ie~~~yLi~~~h~~~~---~~~~e~~~~~~~~~~~a~~~~~id~vkyLi~~~h~~~~~~~~~~~~~~vt 419 (1276)
++.+.|.+.|+++.++.|+...-...+ +....+. .+.|...|+.++|++|++..-|++-..+..+. |
T Consensus 78 ~~l~~a~~~~~~~~~~~l~~~~~~~~~n~~d~~g~T~------Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~----t 147 (276)
T 4hbd_A 78 SDAHPELVRRHLVTFRAMSARLLDYVVNIADSNGNTA------LHYSVSHANFPVVQQLLDSGVCKVDKQNRAGY----S 147 (276)
T ss_dssp TTCCHHHHHHHHHHHHHHCHHHHHHHHTCCCTTSCCH------HHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSC----C
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHhhcCcCCCCCCCCH------HHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCC----C
Confidence 556777888888888888765443221 2222222 23333468999999999988888878888888 9
Q ss_pred cchhcc-----ccCCHhHHHhhcccccccccCCChhhHHHHHHHHhHhccCCChhhHHHhhhhhcccccCCChhhhhhhh
Q psy9003 420 ECHKAG-----LFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLV 494 (1276)
Q Consensus 420 ~lh~a~-----~~~~~~~~~yli~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~~~~~~~v~~~~~a~~~~~~e~~~~lv 494 (1276)
|||.|+ ..+..+++++|+..+.. ....+ ... .|..|.|..+|..|.+++|+
T Consensus 148 pL~~a~~~~~~~~~~~~~v~~Ll~~g~~-~~~~~------------------~~g-----~tpLh~A~~~g~~~~v~~Ll 203 (276)
T 4hbd_A 148 PIMLTALATLKTQDDIETVLQLFRLGNI-NAKAS------------------QAG-----QTALMLAVSHGRVDVVKALL 203 (276)
T ss_dssp HHHHGGGCCCCSHHHHHHHHHHHHHSCT-TCCCT------------------TTC-----CCHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHcCCC-ccccC------------------CCC-----CCHHHHHHHcCCHHHHHHHH
Confidence 999998 55677777777765511 11111 111 47788888888999999999
Q ss_pred hhhhhhccCCCHHHHHHHhhhhcccccCCCHHHHHHHHh-hhhhcCCCCCcchhhhhhhhhhccccCCCHHHHHHHHHhh
Q psy9003 495 DECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVD-ECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDEC 573 (1276)
Q Consensus 495 ~~~~~~~~~~~~~~~~~~~t~~~~a~~~g~~e~~~~lv~-~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~e~~~~l~~~~ 573 (1276)
+.+.++|.... ...|+.+.|+..|+.+++++|++ .++++|..+. ..-|..+.|...|+.|.+++|++..
T Consensus 204 ~~gad~n~~d~-----~G~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~-----~g~TpL~~A~~~g~~~iv~~Ll~~~ 273 (276)
T 4hbd_A 204 ACEADVNVQDD-----DGSTALMCACEHGHKEIAGLLLAVPSCDISLTDR-----DGSTALMVALDAGQSEIASMLYSRM 273 (276)
T ss_dssp HTTCCTTCCCT-----TSCCHHHHHHHHTCHHHHHHHHTSTTCCTTCCCT-----TSCCHHHHHHHHTCHHHHHHHHHHC
T ss_pred hCCCCCCCCCC-----CCCCHHHHHHHCCCHHHHHHHHhcCCCCCcCcCC-----CCCCHHHHHHHcCCHHHHHHHHhcc
Confidence 98888887654 45788999999999999999998 7888886555 4456666677889999999998764
|
| >1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B | Back alignment and structure |
|---|
Probab=98.73 E-value=3.9e-09 Score=112.17 Aligned_cols=160 Identities=14% Similarity=0.066 Sum_probs=100.6
Q ss_pred ccchhccccCCHhHHHhhcccccccccCCChhhHHHHHHHHhHhccCCChhhHHHhhhhhcccccCCChhhhhhhhhhhh
Q psy9003 419 DECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECH 498 (1276)
Q Consensus 419 t~lh~a~~~~~~~~~~yli~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~~~~~~~v~~~~~a~~~~~~e~~~~lv~~~~ 498 (1276)
|+||.|++.+..++++.||+.+....+ +.. . .|..|.|..+|++|.+++|++...
T Consensus 7 t~L~~a~~~~~~~~~~~ll~~g~~~~~--~~~------------------~-----~t~L~~A~~~g~~~~v~~Ll~~g~ 61 (239)
T 1ycs_B 7 VSLPPGKRTNLRKTGSERIAHGMRVKF--NPL------------------P-----LALLLDSSLEGEFDLVQRIIYEVD 61 (239)
T ss_dssp --------------------------------------------------C-----HHHHHHHHHHTCHHHHHHHTSTTS
T ss_pred ccCchhhhhhhHHHHHHHhccCCCccc--Cch------------------h-----hHHHHHHHHcCCHHHHHHHHHcCC
Confidence 999999999999999999877644322 111 1 567788888888999999998888
Q ss_pred hhccCCCHHHHHHHhhhhcccccCCCHHHHHHHHhhhhhcCCCCCcchhhhhhhhhhccccCCCHHHHHHHHHhhhhccC
Q psy9003 499 KAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGL 578 (1276)
Q Consensus 499 ~~~~~~~~~~~~~~~t~~~~a~~~g~~e~~~~lv~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~ 578 (1276)
++|.... ...|+.|.|+..|+++++++|++.++++|.-+. ..-|..|.|...|+.+.+++|++.++++|.
T Consensus 62 ~~~~~d~-----~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~-----~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~ 131 (239)
T 1ycs_B 62 DPSLPND-----EGITALHNAVCAGHTEIVKFLVQFGVNVNAADS-----DGWTPLHCAASCNNVQVCKFLVESGAAVFA 131 (239)
T ss_dssp SCCCCCT-----TSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCT-----TCCCHHHHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred CCCCcCC-----CCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCC-----CCCCHHHHHHHcCCHHHHHHHHHcCCCcce
Confidence 8876654 457889999999999999999999888876555 455666777789999999999999999883
Q ss_pred CCChhhhhhhhhhhccc--ccCCCHHHHHHHHhhhhhccCC
Q psy9003 579 FGTPEQLKYLVDECHKA--GLFGTPEQLKYLVDECHKAGLF 617 (1276)
Q Consensus 579 ~~~~~~~~~~~~~~~~~--~~~~~~e~~~~l~~~~~~~~~~ 617 (1276)
..... ..|..+.| ...|+.|.+++|++.+++++..
T Consensus 132 ~~~~~----~~t~l~~a~~~~~g~~~~~~~Ll~~~a~~~~~ 168 (239)
T 1ycs_B 132 MTYSD----MQTAADKCEEMEEGYTQCSQFLYGVQEKMGIM 168 (239)
T ss_dssp CCSSS----CCCHHHHCCSSSTTCCCHHHHHHHHHHHTTTT
T ss_pred ecCCC----CcchHHHHHHhhhccHHHHHHHHHhhhccccc
Confidence 22211 01333333 6889999999999999998764
|
| >1z0n_A 5'-AMP-activated protein kinase, beta-1 subunit; beta sandwich, sugar binding protein; HET: BCD; 1.49A {Rattus norvegicus} SCOP: b.1.18.21 PDB: 1z0m_A* 2f15_A | Back alignment and structure |
|---|
Probab=98.73 E-value=1.2e-08 Score=96.82 Aligned_cols=65 Identities=25% Similarity=0.347 Sum_probs=54.3
Q ss_pred ceEEEEEccCCcEEEEEccCCCCccccccceecCCCeEEEEcCCCCCCCcccCcccEEEEEEEEeCCeeeeecCCcceEe
Q psy9003 781 ECHKAGLLCFMHVVCAAGDFNNWNREEFAYKKLDFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHGHLLDRLSPWATYV 860 (1276)
Q Consensus 781 ~a~FalwAP~A~~VsLvGDFN~wd~~~~pM~r~~~GVWsl~Ip~~~~G~~~i~hGs~YkYrV~~~dG~~~~~~DPYAkav 860 (1276)
.+.| +|+|.|++|+|+||||+|+ .++|.+. .|+|+++++ ...|. ..|+|.| ||.+ +.||++..+
T Consensus 12 ~v~F-~wap~a~~V~v~GdFn~W~--~~~m~~~-~g~w~~~v~-l~~G~------~~YKf~V---dG~~--~~DP~~~~~ 75 (96)
T 1z0n_A 12 PTVF-RWTGGGKEVYLSGSFNNWS--KLPMTRS-QNNFVAILD-LPEGE------HQYKFFV---DGQW--THDPSEPIV 75 (96)
T ss_dssp EEEE-EECSCCSCEEEEEGGGTTC--CEECEEE-TTEEEEEEE-ECSEE------EEEEEEE---TTEE--ECCTTSCEE
T ss_pred EEEE-EECCCCcEEEEEEEeCCCc--cccCEEC-CCEEEEEEE-ccCCC------EEEEEEE---CCeE--EcCCCCCeE
Confidence 4689 9999999999999999997 7899884 589999996 54442 5788887 7876 799999876
Q ss_pred e
Q psy9003 861 T 861 (1276)
Q Consensus 861 ~ 861 (1276)
.
T Consensus 76 ~ 76 (96)
T 1z0n_A 76 T 76 (96)
T ss_dssp E
T ss_pred E
Confidence 4
|
| >1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A | Back alignment and structure |
|---|
Probab=98.72 E-value=7.2e-09 Score=102.02 Aligned_cols=151 Identities=19% Similarity=0.168 Sum_probs=81.8
Q ss_pred hhhcccccCCChhhhhhhhhhhhhhccCCCHHHHHHHhhhhcccccCCCHHHHHHHHhhhhhcCCCCCcchhhhhhhhhh
Q psy9003 476 DECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECH 555 (1276)
Q Consensus 476 ~~~~~a~~~~~~e~~~~lv~~~~~~~~~~~~~~~~~~~t~~~~a~~~g~~e~~~~lv~~~~~~~~~~t~~~l~~~~~~~~ 555 (1276)
|..|.|..+|++|.+++|++...++|.... ...|+.+.|+. |+++++++|++.+.+++..+. +..|..+
T Consensus 7 ~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~-----~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~-----~g~t~L~ 75 (162)
T 1ihb_A 7 NELASAAARGDLEQLTSLLQNNVNVNAQNG-----FGRTALQVMKL-GNPEIARRLLLRGANPDLKDR-----TGFAVIH 75 (162)
T ss_dssp HHHHHHHHHTCHHHHHHHTTSCCCTTCCCT-----TSCCHHHHCCS-SCHHHHHHHHHTTCCTTCCCT-----TSCCHHH
T ss_pred hHHHHHHHcCCHHHHHHHHhCCCCccccCc-----cCccHHHHHHc-CcHHHHHHHHHcCCCCCCCCC-----CCCCHHH
Confidence 455666666666666666665555554332 23455566666 666777776666655554333 3334445
Q ss_pred ccccCCCHHHHHHHHHhhhhccCCCChhhhhhhhhhhcccccCCCHHHHHHHHhhhhh-ccCCCChhhhhhhHHHhhhcc
Q psy9003 556 KAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHK-AGLFGTPEQLKYLVDECHKAG 634 (1276)
Q Consensus 556 ~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 634 (1276)
.|...|+++.+++|++.++++|.....- .|..+.|..+|++|.+++|++.+++ ++.+-... .++++-|.
T Consensus 76 ~A~~~~~~~~v~~Ll~~g~~~~~~~~~g-----~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g-----~t~l~~A~ 145 (162)
T 1ihb_A 76 DAARAGFLDTLQTLLEFQADVNIEDNEG-----NLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKG-----DTACDLAR 145 (162)
T ss_dssp HHHHHTCHHHHHHHHHTTCCTTCCCTTS-----CCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTS-----CCHHHHHH
T ss_pred HHHHcCCHHHHHHHHHcCCCCCCcCCCC-----CCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCC-----CcHHHHHH
Confidence 5556666666666666666555222111 3334444466666666666666665 23322222 33444444
Q ss_pred CCCCHHHHHHHHH
Q psy9003 635 LFGTPEQLKYLVD 647 (1276)
Q Consensus 635 ~~~~~~~~~~~~~ 647 (1276)
.+|+.|.+++|++
T Consensus 146 ~~~~~~~~~~Ll~ 158 (162)
T 1ihb_A 146 LYGRNEVVSLMQA 158 (162)
T ss_dssp HTTCHHHHHHHHH
T ss_pred HcCCHHHHHHHHH
Confidence 4555555555553
|
| >3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A | Back alignment and structure |
|---|
Probab=98.72 E-value=7.6e-09 Score=102.81 Aligned_cols=156 Identities=12% Similarity=-0.001 Sum_probs=97.3
Q ss_pred hhhcccccCCChhhhhhhhhhhhhhccCCCHHHHHHHhhhhcccccCCCHHHHHHHHhhhhhcCCCCCcchhhhhhhhhh
Q psy9003 476 DECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECH 555 (1276)
Q Consensus 476 ~~~~~a~~~~~~e~~~~lv~~~~~~~~~~~~~~~~~~~t~~~~a~~~g~~e~~~~lv~~~~~~~~~~t~~~l~~~~~~~~ 555 (1276)
|..|.|..+|++|.+++|++....+|.... ...|+.+.|+..|+++++++|++.+.+++..+. +..|..+
T Consensus 5 t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~-----~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~-----~g~t~L~ 74 (167)
T 3v31_A 5 LSVHQLAAQGEMLYLATRIEQENVINHTDE-----EGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGK-----GRESALS 74 (167)
T ss_dssp CCHHHHHHTTCHHHHHHHHHHSSCTTCCCT-----TSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT-----TCCCHHH
T ss_pred chHHHHHHCCCHHHHHHHHHcCCCcCCCCC-----CCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCC-----CCCcHHH
Confidence 456667777777777777776666554443 345677777777777777777777666664433 3344455
Q ss_pred ccccCCCHHHHHHHHHhhhhccCCCChhhhhhhhhhhcccccCCCHHHHHHHHhhhhhccCCCChhhhhhhHHHhhhccC
Q psy9003 556 KAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGL 635 (1276)
Q Consensus 556 ~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 635 (1276)
.|...|+++.+++|++.++++|...... .|..+-|...|++|.+++|++.+++++.+-..- .++++-|..
T Consensus 75 ~A~~~~~~~~v~~Ll~~g~~~~~~~~~g-----~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g-----~t~l~~A~~ 144 (167)
T 3v31_A 75 LACSKGYTDIVKMLLDCGVDVNEYDWNG-----GTPLLYAVHGNHVKCVKMLLESGADPTIETDSG-----YNSMDLAVA 144 (167)
T ss_dssp HHHHHTCHHHHHHHHHHTCCTTCCCTTS-----CCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTS-----CCHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHCCCCCCcCCCCC-----CCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCC-----CCHHHHHHH
Confidence 5567777777777777777666322211 344444446677777777777776665543322 445555555
Q ss_pred CCCHHHHHHHHHHHHh
Q psy9003 636 FGTPEQLKYLVDECHK 651 (1276)
Q Consensus 636 ~~~~~~~~~~~~~~~~ 651 (1276)
+|..+.+++|.+...+
T Consensus 145 ~~~~~~~~~L~~~~~~ 160 (167)
T 3v31_A 145 LGYRSVQQVIESHLLK 160 (167)
T ss_dssp HTCHHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHH
Confidence 5777777777665544
|
| >2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} | Back alignment and structure |
|---|
Probab=98.70 E-value=8.6e-09 Score=104.96 Aligned_cols=154 Identities=14% Similarity=0.027 Sum_probs=115.4
Q ss_pred hhhhcccccCCChhhhhhhhhhhhhhccCCCHHHHHHHhhhhcccccCCCHHHHHHHHhhhhhcCCCCCcchhhhhhhhh
Q psy9003 475 VDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDEC 554 (1276)
Q Consensus 475 v~~~~~a~~~~~~e~~~~lv~~~~~~~~~~~~~~~~~~~t~~~~a~~~g~~e~~~~lv~~~~~~~~~~t~~~l~~~~~~~ 554 (1276)
.|..|.|...|..+.+++|++...+++.... ...|+.+.|+..|+++++++|++.+.+++..+. +.-|..
T Consensus 36 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~-----~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~-----~g~t~L 105 (192)
T 2rfm_A 36 RTPLMVACMLGMENAIDKLVENFDKLEDKDI-----EGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDF-----SGKTPL 105 (192)
T ss_dssp CCHHHHHHHHTCGGGHHHHHHHHCCTTCCCT-----TSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCT-----TSCCHH
T ss_pred CCHHHHHHHcCCHHHHHHHHHhccccccccc-----cCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCC-----CCCcHH
Confidence 4778888889999999999988877775543 346888888899999999999998887775544 345556
Q ss_pred hccccCCCHHHHHHHHHhhhhccCCCChhhhhhhhhhhcccccCCCHHHHHHHHhhhhhccCCCChhhhhhhHHHhhhcc
Q psy9003 555 HKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAG 634 (1276)
Q Consensus 555 ~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 634 (1276)
+.|+..|+.+.+++|++.++++|...... .|..+-|...|+.+.+++|++.+++++.+-..- .++++-|.
T Consensus 106 ~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g-----~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g-----~t~l~~A~ 175 (192)
T 2rfm_A 106 MWSIIFGYSEMSYFLLEHGANVNDRNLEG-----ETPLIVASKYGRSEIVKKLLELGADISARDLTG-----LTAEASAR 175 (192)
T ss_dssp HHHHHHTCHHHHHHHHHTTCCSSCCCTTC-----CCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTS-----CBHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHCCCCCCCCCCCC-----CCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCC-----CCHHHHHH
Confidence 66778899999999999888887332222 445555557889999999999888876654333 56666677
Q ss_pred CCCCHHHHHHHHHH
Q psy9003 635 LFGTPEQLKYLVDE 648 (1276)
Q Consensus 635 ~~~~~~~~~~~~~~ 648 (1276)
.+|+.|.+++|++.
T Consensus 176 ~~~~~~~v~~Ll~~ 189 (192)
T 2rfm_A 176 IFGRQEVIKIFTEV 189 (192)
T ss_dssp HTTCHHHHHHHHHH
T ss_pred HhCcHHHHHHHHhc
Confidence 77888888888764
|
| >1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 | Back alignment and structure |
|---|
Probab=98.70 E-value=4.6e-09 Score=103.35 Aligned_cols=149 Identities=11% Similarity=0.005 Sum_probs=88.8
Q ss_pred ccchhccccCCHhHHHhhcccccccccCCChhhHHHHHHHHhHhccCCChhhHHHhhhhhcccccCCChhhhhhhhhhhh
Q psy9003 419 DECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECH 498 (1276)
Q Consensus 419 t~lh~a~~~~~~~~~~yli~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~~~~~~~v~~~~~a~~~~~~e~~~~lv~~~~ 498 (1276)
|+||.|+..|+.++|++|+..+. ....+.. . .|..|.|...|+.|.+++|++...
T Consensus 4 ~~L~~A~~~g~~~~v~~Ll~~g~--~~~~~~~------------------g-----~t~L~~A~~~~~~~~v~~Ll~~g~ 58 (153)
T 1awc_B 4 KKLLEAARAGQDDEVRILMANGA--PFTTDWL------------------G-----TSPLHLAAQYGHFSTTEVLLRAGV 58 (153)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHTC--CCCCCTT------------------C-----CCHHHHHHHHTCHHHHHHHHTTTC
T ss_pred HHHHHHHHcCCHHHHHHHHHcCC--CCCcCCC------------------C-----CCHHHHHHHcCCHHHHHHHHHcCC
Confidence 67788888888888888776543 1111111 1 355566666666777777776666
Q ss_pred hhccCCCHHHHHHHhhhhcccccCCCHHHHHHHHhhhhhcCCCCCcchhhhhhhhhhccccCCCHHHHHHHHHhhhhccC
Q psy9003 499 KAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGL 578 (1276)
Q Consensus 499 ~~~~~~~~~~~~~~~t~~~~a~~~g~~e~~~~lv~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~ 578 (1276)
+++.... ...|+.+.|+..|+++++++|++.+.+++..+. ...|..+.|...|+.|.+++|++.+++++.
T Consensus 59 ~~~~~~~-----~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~-----~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~ 128 (153)
T 1awc_B 59 SRDARTK-----VDRTPLHMAASEGHANIVEVLLKHGADVNAKDM-----LKMTALHWATEHNHQEVVELLIKYGADVHT 128 (153)
T ss_dssp CTTCCCT-----TCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCT-----TSCCHHHHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred CCCCCCC-----CCCCHHHHHHHcChHHHHHHHHHcCCCCCCCCC-----CCCCHHHHHHHcCCHHHHHHHHHcCCCccc
Confidence 5554433 235666777777777777777776666664433 334445555566777777777777666663
Q ss_pred CCChhhhhhhhhhhcccccCCCHHHHHHH
Q psy9003 579 FGTPEQLKYLVDECHKAGLFGTPEQLKYL 607 (1276)
Q Consensus 579 ~~~~~~~~~~~~~~~~~~~~~~~e~~~~l 607 (1276)
....- .|..+-|...|+.|.+++|
T Consensus 129 ~~~~g-----~t~l~~A~~~~~~~i~~~L 152 (153)
T 1awc_B 129 QSKFC-----KTAFDISIDNGNEDLAEIL 152 (153)
T ss_dssp CCTTS-----CCHHHHHHHTTCHHHHHHH
T ss_pred cCCCC-----CCHHHHHHHcCCHHHHHHh
Confidence 22211 2444444466666666665
|
| >1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B | Back alignment and structure |
|---|
Probab=98.70 E-value=8.9e-09 Score=100.95 Aligned_cols=145 Identities=14% Similarity=0.038 Sum_probs=83.1
Q ss_pred ccCCChhHHHHHhhhcccccCCCChhhhhcccccchhccccCCHhHHHhhcccccccccCCChhhHHHHHHHHhHhccCC
Q psy9003 387 GLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFG 466 (1276)
Q Consensus 387 ~~~~~id~vkyLi~~~h~~~~~~~~~~~~~~vt~lh~a~~~~~~~~~~yli~~~~~~~~~~~~e~l~~l~~~~~~~~~~~ 466 (1276)
...|+++++++|+..+..++-..+..+. ||||. +..|+.+++++|+..+-... .. +
T Consensus 10 ~~~g~~~~v~~ll~~~~~~~~~~~~~g~----t~L~~-~~~~~~~~v~~Ll~~g~~~~-~~------------------~ 65 (156)
T 1bd8_A 10 AARGDVQEVRRLLHRELVHPDALNRFGK----TALQV-MMFGSTAIALELLKQGASPN-VQ------------------D 65 (156)
T ss_dssp HHHTCHHHHHHHHHTTCCCTTCCCTTSC----CHHHH-SCTTCHHHHHHHHHTTCCTT-CC------------------C
T ss_pred HHhCCHHHHHHHHHhhCcCccccCCCCC----cHHHH-HHcCCHHHHHHHHHCCCCCC-Cc------------------C
Confidence 3357777777777764445555566666 78887 66777777777775432111 11 1
Q ss_pred ChhhHHHhhhhhcccccCCChhhhhhhhhhhhhhccCCCHHHHHHHhhhhcccccCCCHHHHHHHHhhhhhcCCCCCcch
Q psy9003 467 TPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQ 546 (1276)
Q Consensus 467 ~~~~~~~~v~~~~~a~~~~~~e~~~~lv~~~~~~~~~~~~~~~~~~~t~~~~a~~~g~~e~~~~lv~~~~~~~~~~t~~~ 546 (1276)
... .|..|.|...|+.|.+++|++.+.++|.... ...|+.+.|+..|+.+++++|++. .+++..+.
T Consensus 66 ~~g-----~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~-----~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~--- 131 (156)
T 1bd8_A 66 TSG-----TSPVHDAARTGFLDTLKVLVEHGADVNVPDG-----TGALPIHLAVQEGHTAVVSFLAAE-SDLHRRDA--- 131 (156)
T ss_dssp TTS-----CCHHHHHHHTTCHHHHHHHHHTTCCSCCCCT-----TSCCHHHHHHHHTCHHHHHHHHTT-SCTTCCCT---
T ss_pred CCC-----CCHHHHHHHcCcHHHHHHHHHcCCCCCCcCC-----CCCcHHHHHHHhChHHHHHHHHhc-cCCCCcCC---
Confidence 111 3555566666666666666666555554433 335666666666666666666666 44443333
Q ss_pred hhhhhhhhhccccCCCHHHHHHHHH
Q psy9003 547 LKYLVDECHKAGLFGTPEQLKYLVD 571 (1276)
Q Consensus 547 l~~~~~~~~~~~~~~~~e~~~~l~~ 571 (1276)
..-|..+.|...|+.|.+++|++
T Consensus 132 --~g~t~l~~A~~~~~~~~v~~Ll~ 154 (156)
T 1bd8_A 132 --RGLTPLELALQRGAQDLVDILQG 154 (156)
T ss_dssp --TSCCHHHHHHHSCCHHHHHHHHT
T ss_pred --CCCCHHHHHHHcCcHHHHHHHHh
Confidence 23344444556666666666654
|
| >4aef_A Neopullulanase (alpha-amylase II); hydrolase, thermostability, high temperature; 2.34A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=98.68 E-value=2.6e-08 Score=122.32 Aligned_cols=101 Identities=10% Similarity=0.042 Sum_probs=84.7
Q ss_pred cEEEEEEccCCceEEEEeecc-CCCcce----------EEEEEccCccccceEEEEEecCCC----------CCCccc--
Q psy9003 74 SVRCFEWAPSAQQLYLTGNVS-LTPWSI----------MEEASLSSIKLIQSIQYILTGVFG----------TPEQLK-- 130 (1276)
Q Consensus 74 g~~f~~wAP~A~~v~l~gdfn-~~~w~m----------~~~~~~~~~~~g~~yky~i~~~~g----------rp~~as-- 130 (1276)
.+||++..+.++.|.++|+-. = | +|+++||+...+..|+|+|.+.+| +|-...
T Consensus 126 ~~r~~~~~~~~~~~~~~~~~~~~----m~~~~~~~~~d~w~~~v~~~~~~~~Y~f~i~~~~g~~~~~~~~~~~p~~~~~P 201 (645)
T 4aef_A 126 HVLLRTQKGVIKGATFLGEKHVP----MRKKASDELFDYFEVIVEGGDKRLNYSFEVLTMEGAKFEYGQFKARPFSIEFP 201 (645)
T ss_dssp EEEEEEETTTEEEEEEESSSEEE----CEEEEECSSEEEEEEEEECSCSCEEEEEEEEETTCCEEEEEEEEECCBCCCCC
T ss_pred EEEEEcccCCcceEEEeCCCEEE----EEEEecCCCeEEEEEEEECCCCceEEEEEEEeCCCcEEEcCCcccCcCCCCCC
Confidence 578999999999999998764 2 4 699999999999999999999998 443211
Q ss_pred ------ccccccccccCC------------------ChHHHHHHHHHHHHhcCc--------------------------
Q psy9003 131 ------YLVDECHKAGLF------------------GTPEQLKYLVDECHKAGL-------------------------- 160 (1276)
Q Consensus 131 ------~~~de~h~gs~~------------------~y~e~a~~li~y~~~~~y-------------------------- 160 (1276)
+|| |||..||. +++-|.++| ||+|++|+
T Consensus 202 ~W~~~aViY-qI~p~~F~~~~~~~g~~~~~~~~~gGdl~Gi~~kL-dYLk~LGvt~I~L~Pif~s~~~~GYd~~dy~~id 279 (645)
T 4aef_A 202 TWVIDRVFY-QIMPDKFARSRKIQGIAYPKDKYWGGDLIGIKEKI-DHLVNLGINAIYLTPIFSSLTYHGYDIVDYFHVA 279 (645)
T ss_dssp GGGGGCCEE-EECHHHHCCCSSCC---------CCCCHHHHHHTH-HHHHHHTCCEEEECCCEEESSTTCSSEEEEEEEC
T ss_pred hhHcCCEEE-EEecchhcCCCCCCcccCCcCcCCCcCHHHHHHhh-HHHHHcCCCEEEECCCCCCCCCCCcCccCCCccC
Confidence 122 78877765 477888887 99999999
Q ss_pred --CCCHHHHHHHHHHHHHcCCC
Q psy9003 161 --FGTPEQLKYLVDECHKAGLF 180 (1276)
Q Consensus 161 --ygtp~~l~~~vd~~h~~~i~ 180 (1276)
|||++||+.||++||+.||+
T Consensus 280 p~~Gt~~df~~LV~~aH~~GI~ 301 (645)
T 4aef_A 280 RRLGGDRAFVDLLSELKRFDIK 301 (645)
T ss_dssp GGGTCHHHHHHHHHHHHHTTCE
T ss_pred cccCCHHHHHHHHHHhhhcCCE
Confidence 99999999999999999998
|
| >1z0n_A 5'-AMP-activated protein kinase, beta-1 subunit; beta sandwich, sugar binding protein; HET: BCD; 1.49A {Rattus norvegicus} SCOP: b.1.18.21 PDB: 1z0m_A* 2f15_A | Back alignment and structure |
|---|
Probab=98.59 E-value=3.4e-08 Score=93.74 Aligned_cols=46 Identities=15% Similarity=0.335 Sum_probs=39.0
Q ss_pred cEEEEEEccCCceEEEEeecc-CCCcce-----EEEEEccCccccc-eEEEEEecCCC
Q psy9003 74 SVRCFEWAPSAQQLYLTGNVS-LTPWSI-----MEEASLSSIKLIQ-SIQYILTGVFG 124 (1276)
Q Consensus 74 g~~f~~wAP~A~~v~l~gdfn-~~~w~m-----~~~~~~~~~~~g~-~yky~i~~~~g 124 (1276)
.++| +|||+|++|+|+|||| |+...| +|+++++ +++|. .|||+| +|
T Consensus 12 ~v~F-~wap~a~~V~v~GdFn~W~~~~m~~~~g~w~~~v~-l~~G~~~YKf~V---dG 64 (96)
T 1z0n_A 12 PTVF-RWTGGGKEVYLSGSFNNWSKLPMTRSQNNFVAILD-LPEGEHQYKFFV---DG 64 (96)
T ss_dssp EEEE-EECSCCSCEEEEEGGGTTCCEECEEETTEEEEEEE-ECSEEEEEEEEE---TT
T ss_pred EEEE-EECCCCcEEEEEEEeCCCccccCEECCCEEEEEEE-ccCCCEEEEEEE---CC
Confidence 7999 9999999999999995 542226 9999995 99995 799988 56
|
| >1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 | Back alignment and structure |
|---|
Probab=98.59 E-value=1.7e-08 Score=99.28 Aligned_cols=149 Identities=11% Similarity=-0.007 Sum_probs=93.7
Q ss_pred hhhcccccCCChhhhhhhhhhhhhhccCCCHHHHHHHhhhhcccccCCCHHHHHHHHhhhhhcCCCCCcchhhhhhhhhh
Q psy9003 476 DECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECH 555 (1276)
Q Consensus 476 ~~~~~a~~~~~~e~~~~lv~~~~~~~~~~~~~~~~~~~t~~~~a~~~g~~e~~~~lv~~~~~~~~~~t~~~l~~~~~~~~ 555 (1276)
+..|.|..+|+.|.+++|++....++.. ....|+.+.|+..|+++++++|++.+.+++..+. +.-|..+
T Consensus 4 ~~L~~A~~~g~~~~v~~Ll~~g~~~~~~------~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~-----~g~t~L~ 72 (153)
T 1awc_B 4 KKLLEAARAGQDDEVRILMANGAPFTTD------WLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTK-----VDRTPLH 72 (153)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHTCCCCCC------TTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCT-----TCCCHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHcCCCCCcC------CCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCC-----CCCCHHH
Confidence 4456666677777777777766554421 1235677777777888888888877666664433 3344455
Q ss_pred ccccCCCHHHHHHHHHhhhhccCCCChhhhhhhhhhhcccccCCCHHHHHHHHhhhhhccCCCChhhhhhhHHHhhhccC
Q psy9003 556 KAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGL 635 (1276)
Q Consensus 556 ~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 635 (1276)
.|...|+++.+++|++.++++|...... .|..+-|...|++|.+++|++.++++|.+-... -++++-|..
T Consensus 73 ~A~~~~~~~~v~~Ll~~g~~~~~~~~~g-----~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g-----~t~l~~A~~ 142 (153)
T 1awc_B 73 MAASEGHANIVEVLLKHGADVNAKDMLK-----MTALHWATEHNHQEVVELLIKYGADVHTQSKFC-----KTAFDISID 142 (153)
T ss_dssp HHHHHTCHHHHHHHHTTTCCTTCCCTTS-----CCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTS-----CCHHHHHHH
T ss_pred HHHHcChHHHHHHHHHcCCCCCCCCCCC-----CCHHHHHHHcCCHHHHHHHHHcCCCccccCCCC-----CCHHHHHHH
Confidence 5567777888888887777766332221 344555556777888888887777776553333 355555566
Q ss_pred CCCHHHHHHH
Q psy9003 636 FGTPEQLKYL 645 (1276)
Q Consensus 636 ~~~~~~~~~~ 645 (1276)
.|+.+.+++|
T Consensus 143 ~~~~~i~~~L 152 (153)
T 1awc_B 143 NGNEDLAEIL 152 (153)
T ss_dssp TTCHHHHHHH
T ss_pred cCCHHHHHHh
Confidence 6777776665
|
| >2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.56 E-value=4.2e-09 Score=112.26 Aligned_cols=127 Identities=16% Similarity=-0.012 Sum_probs=75.6
Q ss_pred ccchhccccCCHhHHHhhcccccccccCCChhhHHHHHHHHhHhccCCChhhHHHhhhhhcccccCCChhhhhhhhhhhh
Q psy9003 419 DECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECH 498 (1276)
Q Consensus 419 t~lh~a~~~~~~~~~~yli~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~~~~~~~v~~~~~a~~~~~~e~~~~lv~~~~ 498 (1276)
|+||.|+..|+.++|++|+..+- .+.. .+... .|..|.|..+|..|.+++|++...
T Consensus 23 t~L~~A~~~g~~~~v~~Ll~~g~-~~~~------------------~d~~g-----~tpLh~A~~~g~~~~v~~Ll~~ga 78 (229)
T 2vge_A 23 VLLLDAALTGELEVVQQAVKEMN-DPSQ------------------PNEEG-----ITALHNAICGANYSIVDFLITAGA 78 (229)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHSS-CTTC------------------CCTTS-----CCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCHHHHHHHHhcCC-CCCC------------------CCCCC-----CCHHHHHHHcCCHHHHHHHHHCCC
Confidence 66777777777777777665432 1111 11111 455666666666677777776666
Q ss_pred hhccCCCHHHHHHHhhhhcccccCCCHHHHHHHHhhhhhcCCCCCcchhhhhhhhhhcc--ccCCCHHHHHHHHHhhhhc
Q psy9003 499 KAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKA--GLFGTPEQLKYLVDECHKA 576 (1276)
Q Consensus 499 ~~~~~~~~~~~~~~~t~~~~a~~~g~~e~~~~lv~~~~~~~~~~t~~~l~~~~~~~~~~--~~~~~~e~~~~l~~~~~~~ 576 (1276)
++|.... ...|+.+.|+..|+++++++|++.+++++..+. .+..|..+.| ...|+.|.+++|++.++++
T Consensus 79 ~~n~~d~-----~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~----~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~ 149 (229)
T 2vge_A 79 NVNSPDS-----HGWTPLHCAASCNDTVICMALVQHGAAIFATTL----SDGATAFEKCDPYREGYADCATYLADVEQSM 149 (229)
T ss_dssp CTTCCCT-----TCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCS----STTCCTGGGCCTTSTTHHHHHHHHHHHHHHT
T ss_pred CCCCCCC-----CCCCHHHHHHHcCCHHHHHHHHHcCCCcccccC----CCCCCHHHHHHHHhcChHHHHHHHHHcCCCc
Confidence 6655443 345667777777777777777777666664321 0233334444 5677777777777777776
Q ss_pred cC
Q psy9003 577 GL 578 (1276)
Q Consensus 577 ~~ 578 (1276)
|.
T Consensus 150 ~~ 151 (229)
T 2vge_A 150 GL 151 (229)
T ss_dssp TT
T ss_pred cc
Confidence 64
|
| >1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B | Back alignment and structure |
|---|
Probab=98.44 E-value=9.8e-08 Score=101.40 Aligned_cols=126 Identities=13% Similarity=0.025 Sum_probs=48.2
Q ss_pred hhhcccccCCChhhhhhhhhhhhhhccCCCHHHHHHHhhhhcccccCCCHHHHHHHHhhhhhcCCCCCcchhhhhhhhhh
Q psy9003 476 DECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECH 555 (1276)
Q Consensus 476 ~~~~~a~~~~~~e~~~~lv~~~~~~~~~~~~~~~~~~~t~~~~a~~~g~~e~~~~lv~~~~~~~~~~t~~~l~~~~~~~~ 555 (1276)
|..|.|...+..+.++.|++.+.+++.. ....|..+.|+..|+++++++|++.++++|..+. ..-|..|
T Consensus 7 t~L~~a~~~~~~~~~~~ll~~g~~~~~~------~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~-----~g~t~L~ 75 (239)
T 1ycs_B 7 VSLPPGKRTNLRKTGSERIAHGMRVKFN------PLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPND-----EGITALH 75 (239)
T ss_dssp ------------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSCCCCCT-----TSCCHHH
T ss_pred ccCchhhhhhhHHHHHHHhccCCCcccC------chhhHHHHHHHHcCCHHHHHHHHHcCCCCCCcCC-----CCCCHHH
Confidence 3445555555555555555555555421 1124555555556666666666655555443333 2333444
Q ss_pred ccccCCCHHHHHHHHHhhhhccCCCChhhhhhhhhhhcccccCCCHHHHHHHHhhhhhccCC
Q psy9003 556 KAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLF 617 (1276)
Q Consensus 556 ~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~ 617 (1276)
.|...|+++.+++|++.++++|.....- .|..+-|...|+.+.+++|++.++++|.+
T Consensus 76 ~A~~~g~~~~v~~Ll~~ga~~~~~d~~g-----~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~ 132 (239)
T 1ycs_B 76 NAVCAGHTEIVKFLVQFGVNVNAADSDG-----WTPLHCAASCNNVQVCKFLVESGAAVFAM 132 (239)
T ss_dssp HHHHHTCHHHHHHHHHHTCCTTCCCTTC-----CCHHHHHHHTTCHHHHHHHHHTTCCTTCC
T ss_pred HHHHcCCHHHHHHHHHcCCCCCccCCCC-----CCHHHHHHHcCCHHHHHHHHHcCCCccee
Confidence 4445556666666665555555222111 23333333555556666666555555443
|
| >1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 | Back alignment and structure |
|---|
Probab=98.42 E-value=1.2e-07 Score=91.63 Aligned_cols=121 Identities=13% Similarity=0.068 Sum_probs=75.3
Q ss_pred ccchhccccCCHhHHHhhcccccccccCCChhhHHHHHHHHhHhccCCChhhHHHhhhhhcccccCCChhhhhhhhhhhh
Q psy9003 419 DECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECH 498 (1276)
Q Consensus 419 t~lh~a~~~~~~~~~~yli~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~~~~~~~v~~~~~a~~~~~~e~~~~lv~~~~ 498 (1276)
|+||.|+..|+.++|++|+..+-- + +..+... .|..|.|.. |..|.+++|++...
T Consensus 14 t~L~~A~~~~~~~~v~~Ll~~g~~-~------------------~~~~~~g-----~t~L~~A~~-~~~~~v~~Ll~~g~ 68 (136)
T 1d9s_A 14 AGLATAAARGQVETVRQLLEAGAD-P------------------NALNRFG-----RRPIQVMMM-GSAQVAELLLLHGA 68 (136)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTTCC-T------------------TCCCTTC-----CTTTTTSTT-SCHHHHHHHHHHTC
T ss_pred cHHHHHHHcCCHHHHHHHHHcCCC-c------------------CCcCCCC-----CCHHHHHHc-CCHHHHHHHHHCCC
Confidence 888888888888888888765311 1 1111111 456666666 77777777776666
Q ss_pred hhccCCCHHHHHH-HhhhhcccccCCCHHHHHHHHhhhhhcCCCCCcchhhhhhhhhhccccCCCHHHHHHHHHhhh
Q psy9003 499 KAGLFGTPEQLKY-LVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECH 574 (1276)
Q Consensus 499 ~~~~~~~~~~~~~-~~t~~~~a~~~g~~e~~~~lv~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~e~~~~l~~~~~ 574 (1276)
++|.... . ..|+.+.|+..|++|++++|++.+++++..+. +.-|..+.|...|+.|.+++|++.++
T Consensus 69 ~~~~~~~-----~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~-----~g~tpl~~A~~~~~~~~~~~Ll~~Ga 135 (136)
T 1d9s_A 69 EPNCADP-----ATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDA-----WGRLPVDLAEEQGHRDIARYLHAATG 135 (136)
T ss_dssp CSSCCBT-----TTTBCHHHHHHHHTCHHHHHHHHHTCCCCCCCSS-----SSSCHHHHHHHHTCHHHHHHHHHHHC
T ss_pred CCCCcCC-----CCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCC-----CCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence 6665443 3 45667777777777777777776666664433 33344455556677777777776665
|
| >3klk_A Glucansucrase; native form, open conformation, multidomain protein, glycosyltransferase, transferase; 1.65A {Lactobacillus reuteri} PDB: 3kll_A* 3hz3_A* 4amc_A | Back alignment and structure |
|---|
Probab=98.41 E-value=2.3e-07 Score=118.34 Aligned_cols=69 Identities=26% Similarity=0.312 Sum_probs=59.8
Q ss_pred CcCCCCCcHHHHHHHHHHHHHHHH---------hCCCcEEccCCccccccccCCCCCCCCCCCccccCCCCCchHHHHHH
Q psy9003 1094 SRLFNYSEIEVLRFLLSNLRWYLD---------EYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLM 1164 (1276)
Q Consensus 1094 g~~LN~~np~Vr~~Iidsl~~Wv~---------eygVDGFRfD~a~~L~~~d~g~g~~~~~~~~~~~~~~~d~~a~~Fl~ 1164 (1276)
.++||++||+||+.|+++++||++ ++||||||+|++.+|. ..||+
T Consensus 244 l~DLN~~NPeVr~el~~~~~~Wld~g~w~~~~~e~GVDGFRLDAVkhI~--------------------------~dFl~ 297 (1039)
T 3klk_A 244 ANDIDNSNPVVQAEELNWLYYLMNFGTITGNNPEANFDGIRVDAVDNVD--------------------------VDLLS 297 (1039)
T ss_dssp SEEECTTSHHHHHHHHHHHHHHHTHHHHHHSCTTSSCCEEEETTGGGSC--------------------------THHHH
T ss_pred ccccCCCCHHHHHHHHHHHHHHHhhccccccccccCCCEEEEehhhcCC--------------------------HHHHH
Confidence 589999999999999999999999 8999999999999883 24788
Q ss_pred HHHHHHHhhCC---------CeEEEEEccCCCC
Q psy9003 1165 VANKFLHDKYP---------EIITIAEDVSGMP 1188 (1276)
Q Consensus 1165 el~~~Vr~~~P---------dvilIAE~~s~~p 1188 (1276)
++.+.+++.+| ++++|||.|...+
T Consensus 298 ef~~~l~~~~~~~~~~~~a~d~f~VGEvw~~~~ 330 (1039)
T 3klk_A 298 IARDYFNAAYNMEQSDASANKHINILEDWGWDD 330 (1039)
T ss_dssp HHHHHHHHHHCGGGCHHHHTTSCCEECCCCTTH
T ss_pred HHHHHHHHHhcccccccccCCeEEEEecCCCCH
Confidence 88888877666 5899999997544
|
| >1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A | Back alignment and structure |
|---|
Probab=98.37 E-value=9.7e-08 Score=94.52 Aligned_cols=124 Identities=13% Similarity=0.046 Sum_probs=74.0
Q ss_pred ccchhccccCCHhHHHhhcccccccccCCChhhHHHHHHHHhHhccCCChhhHHHhhhhhcccccCCChhhhhhhhhhhh
Q psy9003 419 DECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECH 498 (1276)
Q Consensus 419 t~lh~a~~~~~~~~~~yli~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~~~~~~~v~~~~~a~~~~~~e~~~~lv~~~~ 498 (1276)
|+||.|+..|+.++|++|+..+. .....+ ... .|..|.|. +|..|.+++|++...
T Consensus 14 t~L~~A~~~g~~~~v~~Ll~~g~-~~~~~~------------------~~g-----~t~L~~A~-~~~~~~v~~Ll~~g~ 68 (156)
T 1bi7_B 14 DWLATAAARGRVEEVRALLEAGA-NPNAPN------------------SYG-----RRPIQVMM-MGSARVAELLLLHGA 68 (156)
T ss_dssp THHHHHHHHTCHHHHHHHHTTTC-CTTCCC------------------SSS-----CCTTTSSC-TTCHHHHHHHHTTTC
T ss_pred HHHHHHHHcCCHHHHHHHHHcCC-CCCCCC------------------CCC-----CCHHHHHH-cCCHHHHHHHHHcCC
Confidence 88888888888888888886532 111111 111 35556663 667777777776666
Q ss_pred hhccCCCHHHHHHHhh-hhcccccCCCHHHHHHHHhhhhhcCCCCCcchhhhhhhhhhccccCCCHHHHHHHHHhhhhcc
Q psy9003 499 KAGLFGTPEQLKYLVD-ECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAG 577 (1276)
Q Consensus 499 ~~~~~~~~~~~~~~~t-~~~~a~~~g~~e~~~~lv~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~ 577 (1276)
++|.... ...| +.+.|+..|+++++++|++.+++++..+. +..|..+.|...|+.|.+++|++.+++++
T Consensus 69 ~~~~~d~-----~g~ttpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~-----~g~tpl~~A~~~~~~~~v~~Ll~~ga~~~ 138 (156)
T 1bi7_B 69 EPNCADP-----ATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDA-----WGRLPVDLAEELGHRDVARYLRAAAGGTR 138 (156)
T ss_dssp CCCCCCT-----TTCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCT-----TCCCHHHHHHHHTCHHHHHHHSSCC----
T ss_pred CCCCcCC-----CCCcHHHHHHHHCCCHHHHHHHHHcCCCCcccCC-----CCCCHHHHHHHhCHHHHHHHHHHcCCCCC
Confidence 6665443 2344 66677777777777777777666664443 33444455556677777777777766666
|
| >2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C | Back alignment and structure |
|---|
Probab=98.30 E-value=3.2e-07 Score=88.75 Aligned_cols=120 Identities=13% Similarity=0.060 Sum_probs=84.8
Q ss_pred hhhhcccccCCCHHHHHHHHhhhhhcCCCCCcchhhhhhhhhhccccCCCHHHHHHHHHhhhhccCCCChhhhhhhhhhh
Q psy9003 513 VDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDEC 592 (1276)
Q Consensus 513 ~t~~~~a~~~g~~e~~~~lv~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 592 (1276)
.|..+.|+..|+++++++|++.+.+++..+. +..|..+.|+..|++|.+++|++.++++|...... .|..
T Consensus 15 ~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~-----~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g-----~t~L 84 (136)
T 2jab_A 15 GKKLLEAARAGQDDEVRILMANGADVNAKDE-----YGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIG-----FTPL 84 (136)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHTTCCTTCCCT-----TSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTC-----CCHH
T ss_pred cHHHHHHHHhCCHHHHHHHHHcCCCCCCcCC-----CCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCC-----CCHH
Confidence 6778888888888888888888777764443 34455666668888888888888888777322221 3445
Q ss_pred cccccCCCHHHHHHHHhhhhhccCCCChhhhhhhHHHhhhccCCCCHHHHHHHHH
Q psy9003 593 HKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVD 647 (1276)
Q Consensus 593 ~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 647 (1276)
+.|...|++|.+++|++.+++++.+-... .++++-|..+|+.|.+++|++
T Consensus 85 ~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g-----~tpl~~A~~~~~~~~~~~Ll~ 134 (136)
T 2jab_A 85 HLAAFIGHLEIAEVLLKHGADVNAQDKFG-----KTAFDISIGNGNEDLAEILQK 134 (136)
T ss_dssp HHHHHHTCHHHHHHHHHTTCCTTCCCTTS-----CCHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHcCCCCcCcCCCC-----CCHHHHHHHCCCHHHHHHHHH
Confidence 55557888888888888887776554333 456666666788888887764
|
| >3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} | Back alignment and structure |
|---|
Probab=98.29 E-value=3e-07 Score=95.45 Aligned_cols=161 Identities=12% Similarity=-0.045 Sum_probs=97.7
Q ss_pred ccchhccccCCHhHHHhhcccccccccCCChhhHHHHHHHHhHhccCCChhhHHHhhhhhcccccCCChh----hhhhhh
Q psy9003 419 DECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPE----QLKYLV 494 (1276)
Q Consensus 419 t~lh~a~~~~~~~~~~yli~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~~~~~~~v~~~~~a~~~~~~e----~~~~lv 494 (1276)
++++.|++.|+.+.++.++...- +. .++ +.=.|..|.|..+|+.+ .+++|+
T Consensus 8 ~~l~~Aa~~g~~~~~~~l~~~~~--------~~---------------~~~--~~g~T~Lh~A~~~~~~~~~~~iv~~Ll 62 (186)
T 3t8k_A 8 RTVSAAAMLGTYEDFLELFEKGY--------ED---------------KES--VLKSNILYDVLRNNNDEARYKISMFLI 62 (186)
T ss_dssp SSHHHHHHHSCHHHHHHHHHHSS--------SC---------------HHH--HHTTTHHHHHTTCSCHHHHHHHHHHHH
T ss_pred cHHHHHHHcCCHHHHHHHHhcCc--------cc---------------ccc--cCCCCHHHHHHHcCCcchHHHHHHHHH
Confidence 67888888888777776664320 00 000 01146777777777654 577888
Q ss_pred hhhhhhccCCCHHHHHHHhhhhcccccCCC------HHHHHHHHhhhhhcCCCCCcchhhhhh-hhhhcccc-----CCC
Q psy9003 495 DECHKAGLFGTPEQLKYLVDECHKAGLFGT------PEQLKYLVDECHKAGLFGTPEQLKYLV-DECHKAGL-----FGT 562 (1276)
Q Consensus 495 ~~~~~~~~~~~~~~~~~~~t~~~~a~~~g~------~e~~~~lv~~~~~~~~~~t~~~l~~~~-~~~~~~~~-----~~~ 562 (1276)
+.++++|.... ...|+.|.|+..|. +|++++|++.++++|.-+.. .- |-.|.|.. .+.
T Consensus 63 ~~Gadvn~~d~-----~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~-----g~ttpLh~A~~~~~~~~~~ 132 (186)
T 3t8k_A 63 NKGADIKSRTK-----EGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKP-----YKIVVFKNIFNYFVDENEM 132 (186)
T ss_dssp HTTCCSSCCCT-----TCCCTHHHHHHHCTTCHHHHHHHHHHHHHTTCCSSSCBGG-----GTBCTTGGGGGCCSCHHHH
T ss_pred HCCCCCCCCCC-----CCCcHHHHHHHcCCcchhhHHHHHHHHHHCCCCCCccCCC-----cCchHHHHHHHcCCChhhH
Confidence 88777776553 34566666666554 57788888887777754432 22 22233333 344
Q ss_pred HHHHHHHHH-hhhhccCCCChhhhhhhhhhhcccccCCCHHHHHHHHhhhhhccCCCC
Q psy9003 563 PEQLKYLVD-ECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGT 619 (1276)
Q Consensus 563 ~e~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~ 619 (1276)
.+.+++|++ .++++|.....- -|..+-|...|..+.+++|.+...+.|.|=|
T Consensus 133 ~~iv~~Ll~~~gad~~~~d~~G-----~TpL~~A~~~~~~~~v~~L~~~~~~~~~~~~ 185 (186)
T 3t8k_A 133 IPLYKLIFSQSGLQLLIKDKWG-----LTALEFVKRCQKPIALKMMEDYIKKYNLKEN 185 (186)
T ss_dssp HHHHHHHHTSTTCCTTCCCTTS-----CCHHHHHHTTTCHHHHHHHHHHHHHHTCCC-
T ss_pred HHHHHHHHHhcCCCCcccCCCC-----CCHHHHHHHcCCHHHHHHHHHHHHHHhcccC
Confidence 567777777 777777333222 3444444577777888888877777776643
|
| >1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A | Back alignment and structure |
|---|
Probab=98.28 E-value=2.6e-07 Score=91.47 Aligned_cols=129 Identities=13% Similarity=0.045 Sum_probs=92.4
Q ss_pred hhhhcccccCCChhhhhhhhhhhhhhccCCCHHHHHHHhhhhcccccCCCHHHHHHHHhhhhhcCCCCCcchhhhhhh-h
Q psy9003 475 VDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVD-E 553 (1276)
Q Consensus 475 v~~~~~a~~~~~~e~~~~lv~~~~~~~~~~~~~~~~~~~t~~~~a~~~g~~e~~~~lv~~~~~~~~~~t~~~l~~~~~-~ 553 (1276)
-|..|.|...|..|.+++|++...++|.... ...|+.+.|+ .|+++++++|++.++++|..+. ..-| -
T Consensus 13 ~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~-----~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~~~d~-----~g~ttp 81 (156)
T 1bi7_B 13 ADWLATAAARGRVEEVRALLEAGANPNAPNS-----YGRRPIQVMM-MGSARVAELLLLHGAEPNCADP-----ATLTRP 81 (156)
T ss_dssp TTHHHHHHHHTCHHHHHHHHTTTCCTTCCCS-----SSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCT-----TTCCCH
T ss_pred hHHHHHHHHcCCHHHHHHHHHcCCCCCCCCC-----CCCCHHHHHH-cCCHHHHHHHHHcCCCCCCcCC-----CCCcHH
Confidence 4677888888999999999988877776543 3467788885 8999999999998888775544 3344 5
Q ss_pred hhccccCCCHHHHHHHHHhhhhccCCCChhhhhhhhhhhcccccCCCHHHHHHHHhhhhhccCCCC
Q psy9003 554 CHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGT 619 (1276)
Q Consensus 554 ~~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~ 619 (1276)
.+.|...|+++.+++|++.++++|.....- .|..+-|...|+.|.+++|+..+++++.+-.
T Consensus 82 L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g-----~tpl~~A~~~~~~~~v~~Ll~~ga~~~~~~~ 142 (156)
T 1bi7_B 82 VHDAAREGFLDTLVVLHRAGARLDVRDAWG-----RLPVDLAEELGHRDVARYLRAAAGGTRGSNH 142 (156)
T ss_dssp HHHHHHHTCHHHHHHHHHHTCCSSCCCTTC-----CCHHHHHHHHTCHHHHHHHSSCC--------
T ss_pred HHHHHHCCCHHHHHHHHHcCCCCcccCCCC-----CCHHHHHHHhCHHHHHHHHHHcCCCCCccCc
Confidence 666778899999999999988888433222 4555666688999999999999888876543
|
| >1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 | Back alignment and structure |
|---|
Probab=98.24 E-value=5e-07 Score=87.35 Aligned_cols=121 Identities=13% Similarity=0.073 Sum_probs=61.6
Q ss_pred hhhcccccCCChhhhhhhhhhhhhhccCCCHHHHHHHhhhhcccccCCCHHHHHHHHhhhhhcCCCCCcchhhh-hhhhh
Q psy9003 476 DECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKY-LVDEC 554 (1276)
Q Consensus 476 ~~~~~a~~~~~~e~~~~lv~~~~~~~~~~~~~~~~~~~t~~~~a~~~g~~e~~~~lv~~~~~~~~~~t~~~l~~-~~~~~ 554 (1276)
|..|.|...|++|.+++|++...++|.... ...|+.+.|+. |+++++++|++.+.+++..+. . .-|..
T Consensus 14 t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~-----~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~-----~~g~t~L 82 (136)
T 1d9s_A 14 AGLATAAARGQVETVRQLLEAGADPNALNR-----FGRRPIQVMMM-GSAQVAELLLLHGAEPNCADP-----ATLTRPV 82 (136)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTTCCTTCCCT-----TCCTTTTTSTT-SCHHHHHHHHHHTCCSSCCBT-----TTTBCHH
T ss_pred cHHHHHHHcCCHHHHHHHHHcCCCcCCcCC-----CCCCHHHHHHc-CCHHHHHHHHHCCCCCCCcCC-----CCCCCHH
Confidence 455555555666666666655555544332 23455666666 666666666665555543322 1 23334
Q ss_pred hccccCCCHHHHHHHHHhhhhccCCCChhhhhhhhhhhcccccCCCHHHHHHHHhhhh
Q psy9003 555 HKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECH 612 (1276)
Q Consensus 555 ~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~ 612 (1276)
+.|...|++|.+++|++.++++|.....- .|..+-|...|+.|.+++|++.++
T Consensus 83 ~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g-----~tpl~~A~~~~~~~~~~~Ll~~Ga 135 (136)
T 1d9s_A 83 HDAAREGFLDTLVVLHRAGARLDVCDAWG-----RLPVDLAEEQGHRDIARYLHAATG 135 (136)
T ss_dssp HHHHHHTCHHHHHHHHHTCCCCCCCSSSS-----SCHHHHHHHHTCHHHHHHHHHHHC
T ss_pred HHHHHcCCHHHHHHHHHcCCCCCccCCCC-----CCHHHHHHHcCCHHHHHHHHHcCC
Confidence 44445566666666666555555221111 233333335555666666655554
|
| >2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C | Back alignment and structure |
|---|
Probab=98.20 E-value=4.8e-07 Score=87.46 Aligned_cols=122 Identities=12% Similarity=0.042 Sum_probs=98.2
Q ss_pred hhhhcccccCCChhhhhhhhhhhhhhccCCCHHHHHHHhhhhcccccCCCHHHHHHHHhhhhhcCCCCCcchhhhhhhhh
Q psy9003 475 VDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDEC 554 (1276)
Q Consensus 475 v~~~~~a~~~~~~e~~~~lv~~~~~~~~~~~~~~~~~~~t~~~~a~~~g~~e~~~~lv~~~~~~~~~~t~~~l~~~~~~~ 554 (1276)
-|..|.|..+|++|.+++|++...++|.... ...|..+.|+..|+++++++|++.++++|..+. +..|..
T Consensus 15 ~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~-----~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~-----~g~t~L 84 (136)
T 2jab_A 15 GKKLLEAARAGQDDEVRILMANGADVNAKDE-----YGLTPLYLATAHGHLEIVEVLLKNGADVNAVDA-----IGFTPL 84 (136)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHTTCCTTCCCT-----TSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCT-----TCCCHH
T ss_pred cHHHHHHHHhCCHHHHHHHHHcCCCCCCcCC-----CCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCC-----CCCCHH
Confidence 5788999999999999999999888876653 457899999999999999999999888875544 345566
Q ss_pred hccccCCCHHHHHHHHHhhhhccCCCChhhhhhhhhhhcccccCCCHHHHHHHHhhh
Q psy9003 555 HKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDEC 611 (1276)
Q Consensus 555 ~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~ 611 (1276)
+.|...|++|.+++|++.+++++...... .|..+-|...|+.|.+++|++.+
T Consensus 85 ~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g-----~tpl~~A~~~~~~~~~~~Ll~~G 136 (136)
T 2jab_A 85 HLAAFIGHLEIAEVLLKHGADVNAQDKFG-----KTAFDISIGNGNEDLAEILQKLN 136 (136)
T ss_dssp HHHHHHTCHHHHHHHHHTTCCTTCCCTTS-----CCHHHHHHHTTCHHHHHHHHHC-
T ss_pred HHHHHcCCHHHHHHHHHcCCCCcCcCCCC-----CCHHHHHHHCCCHHHHHHHHHcC
Confidence 67778999999999999998888433222 45666666899999999998753
|
| >2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.19 E-value=9.6e-07 Score=94.06 Aligned_cols=128 Identities=16% Similarity=0.003 Sum_probs=101.8
Q ss_pred hhhhcccccCCChhhhhhhhhhhhhhccCCCHHHHHHHhhhhcccccCCCHHHHHHHHhhhhhcCCCCCcchhhhhhhhh
Q psy9003 475 VDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDEC 554 (1276)
Q Consensus 475 v~~~~~a~~~~~~e~~~~lv~~~~~~~~~~~~~~~~~~~t~~~~a~~~g~~e~~~~lv~~~~~~~~~~t~~~l~~~~~~~ 554 (1276)
.|..|.|...|+.|.+++|++...++|.... ...|+.+.|+..|+++++++|++.++++|..+. +.-|..
T Consensus 22 ~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~-----~g~tpLh~A~~~g~~~~v~~Ll~~ga~~n~~d~-----~g~tpL 91 (229)
T 2vge_A 22 LVLLLDAALTGELEVVQQAVKEMNDPSQPNE-----EGITALHNAICGANYSIVDFLITAGANVNSPDS-----HGWTPL 91 (229)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHSSCTTCCCT-----TSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT-----TCCCHH
T ss_pred hHHHHHHHHcCCHHHHHHHHhcCCCCCCCCC-----CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCC-----CCCCHH
Confidence 4677888889999999999988888776554 457888999999999999999998888775554 455666
Q ss_pred hccccCCCHHHHHHHHHhhhhccCCCC-hhhhhhhhhhhccc--ccCCCHHHHHHHHhhhhhccCC
Q psy9003 555 HKAGLFGTPEQLKYLVDECHKAGLFGT-PEQLKYLVDECHKA--GLFGTPEQLKYLVDECHKAGLF 617 (1276)
Q Consensus 555 ~~~~~~~~~e~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~~~e~~~~l~~~~~~~~~~ 617 (1276)
+.|+..|+.|.+++|++.+++++...+ + ..|..+-| ...|+.|.+++|++.++++|.+
T Consensus 92 h~A~~~g~~~~v~~Ll~~ga~~~~~~~~~-----g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~~~~ 152 (229)
T 2vge_A 92 HCAASCNDTVICMALVQHGAAIFATTLSD-----GATAFEKCDPYREGYADCATYLADVEQSMGLM 152 (229)
T ss_dssp HHHHHTTCHHHHHHHHTTTCCTTCCCSST-----TCCTGGGCCTTSTTHHHHHHHHHHHHHHTTTS
T ss_pred HHHHHcCCHHHHHHHHHcCCCcccccCCC-----CCCHHHHHHHHhcChHHHHHHHHHcCCCcccc
Confidence 777789999999999999888884321 2 24556666 7889999999999999998776
|
| >1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 | Back alignment and structure |
|---|
Probab=98.16 E-value=1.2e-06 Score=81.70 Aligned_cols=119 Identities=20% Similarity=0.112 Sum_probs=77.8
Q ss_pred hhhcccccCCCHHHHHHHHhhhhhcCCCCCcchhhhhhhhhhccccCCCHHHHHHHHHhhhhccCCCChhhhhhhhhhhc
Q psy9003 514 DECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECH 593 (1276)
Q Consensus 514 t~~~~a~~~g~~e~~~~lv~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 593 (1276)
|..+.|+..|+++.+++|++...+++..+. ...|..+.|+..|++|.+++|++.+.+++..... ..|..+
T Consensus 4 t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~-----~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~-----g~t~l~ 73 (126)
T 1n0r_A 4 TPLHLAARNGHLEVVKLLLEAGADVNAKDK-----NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKN-----GRTPLH 73 (126)
T ss_dssp CHHHHHHHHTCHHHHHHHHHHTCCTTCCCT-----TSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTT-----SCCHHH
T ss_pred cHHHHHHHcCcHHHHHHHHHcCCCCCCcCC-----CCCcHHHHHHHcCcHHHHHHHHHcCCCCcccCCC-----CCcHHH
Confidence 566777778888888888887766664333 2344455566778888888888877777632221 134445
Q ss_pred ccccCCCHHHHHHHHhhhhhccCCCChhhhhhhHHHhhhccCCCCHHHHHHHHH
Q psy9003 594 KAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVD 647 (1276)
Q Consensus 594 ~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 647 (1276)
-|...|++|.+++|++.+.+++.+-... .++++-|..+|..+.+++|++
T Consensus 74 ~A~~~~~~~~~~~Ll~~g~~~~~~~~~g-----~t~l~~A~~~~~~~~~~~Ll~ 122 (126)
T 1n0r_A 74 LAARNGHLEVVKLLLEAGADVNAKDKNG-----RTPLHLAARNGHLEVVKLLLE 122 (126)
T ss_dssp HHHHTTCHHHHHHHHHTTCCTTCCCTTS-----CCHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHcChHHHHHHHHHcCCCCcccCCCC-----CCHHHHHHHcCcHHHHHHHHH
Confidence 5557788888888888777776543322 445555566677777777765
|
| >1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 | Back alignment and structure |
|---|
Probab=98.15 E-value=8.8e-07 Score=82.62 Aligned_cols=123 Identities=20% Similarity=0.094 Sum_probs=96.2
Q ss_pred hhhcccccCCChhhhhhhhhhhhhhccCCCHHHHHHHhhhhcccccCCCHHHHHHHHhhhhhcCCCCCcchhhhhhhhhh
Q psy9003 476 DECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECH 555 (1276)
Q Consensus 476 ~~~~~a~~~~~~e~~~~lv~~~~~~~~~~~~~~~~~~~t~~~~a~~~g~~e~~~~lv~~~~~~~~~~t~~~l~~~~~~~~ 555 (1276)
|..|.|..+|++|.+++|++...+++.... ...|+.+.|+..|+++++++|++.+.+++..+. ...|..+
T Consensus 4 t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~-----~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~-----~g~t~l~ 73 (126)
T 1n0r_A 4 TPLHLAARNGHLEVVKLLLEAGADVNAKDK-----NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDK-----NGRTPLH 73 (126)
T ss_dssp CHHHHHHHHTCHHHHHHHHHHTCCTTCCCT-----TSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCT-----TSCCHHH
T ss_pred cHHHHHHHcCcHHHHHHHHHcCCCCCCcCC-----CCCcHHHHHHHcCcHHHHHHHHHcCCCCcccCC-----CCCcHHH
Confidence 556778888999999999988777776543 346788899999999999999998888775444 3455566
Q ss_pred ccccCCCHHHHHHHHHhhhhccCCCChhhhhhhhhhhcccccCCCHHHHHHHHhhhhh
Q psy9003 556 KAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHK 613 (1276)
Q Consensus 556 ~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~ 613 (1276)
.|...|++|.+++|++.+.+++...... .|..+-|...|+.+.+++|++.+++
T Consensus 74 ~A~~~~~~~~~~~Ll~~g~~~~~~~~~g-----~t~l~~A~~~~~~~~~~~Ll~~Gad 126 (126)
T 1n0r_A 74 LAARNGHLEVVKLLLEAGADVNAKDKNG-----RTPLHLAARNGHLEVVKLLLEAGAY 126 (126)
T ss_dssp HHHHTTCHHHHHHHHHTTCCTTCCCTTS-----CCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred HHHHcChHHHHHHHHHcCCCCcccCCCC-----CCHHHHHHHcCcHHHHHHHHHcCCC
Confidence 7778999999999999998887333222 4555566689999999999998864
|
| >3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} | Back alignment and structure |
|---|
Probab=98.13 E-value=1.1e-06 Score=91.04 Aligned_cols=164 Identities=11% Similarity=-0.036 Sum_probs=114.0
Q ss_pred hhhcccccCCChhhhhhhhhhhhhhccCCCHHHHHHHhhhhcccccCCCH----HHHHHHHhhhhhcCCCCCcc--hhhh
Q psy9003 476 DECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTP----EQLKYLVDECHKAGLFGTPE--QLKY 549 (1276)
Q Consensus 476 ~~~~~a~~~~~~e~~~~lv~~~~~~~~~~~~~~~~~~~t~~~~a~~~g~~----e~~~~lv~~~~~~~~~~t~~--~l~~ 549 (1276)
+..+.|...|++|.++.+.... ++... =+...|+.|.|+..|+. +++++|++.++++|.-+... .|++
T Consensus 8 ~~l~~Aa~~g~~~~~~~l~~~~--~~~~~----~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~ 81 (186)
T 3t8k_A 8 RTVSAAAMLGTYEDFLELFEKG--YEDKE----SVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFP 81 (186)
T ss_dssp SSHHHHHHHSCHHHHHHHHHHS--SSCHH----HHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHH
T ss_pred cHHHHHHHcCCHHHHHHHHhcC--ccccc----ccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHH
Confidence 5567777889999988777643 22211 12458999999999986 58999999999999655532 4555
Q ss_pred hhhhhhccccCCCHHHHHHHHHhhhhccC--CCCh-hhhhhhhhhhcccccCCCHHHHHHHHh-hhhhccCCCChhhhhh
Q psy9003 550 LVDECHKAGLFGTPEQLKYLVDECHKAGL--FGTP-EQLKYLVDECHKAGLFGTPEQLKYLVD-ECHKAGLFGTPEQLKY 625 (1276)
Q Consensus 550 ~~~~~~~~~~~~~~e~~~~l~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~e~~~~l~~-~~~~~~~~~~~~~~~~ 625 (1276)
.+..... -..+++|.+++|++.++++|. +... ..|++.|. .+....+..+.+++|++ .++++|.+-..-
T Consensus 82 a~~~~~~-~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~--~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G---- 154 (186)
T 3t8k_A 82 LFQGGGN-DITGTTELCKIFLEKGADITALYKPYKIVVFKNIFN--YFVDENEMIPLYKLIFSQSGLQLLIKDKWG---- 154 (186)
T ss_dssp HHHHCTT-CHHHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGG--CCSCHHHHHHHHHHHHTSTTCCTTCCCTTS----
T ss_pred HHHcCCc-chhhHHHHHHHHHHCCCCCCccCCCcCchHHHHHHH--cCCChhhHHHHHHHHHHhcCCCCcccCCCC----
Confidence 4422210 011237889999999999993 3333 45555553 11111345778999999 999998876655
Q ss_pred hHHHhhhccCCCCHHHHHHHHHHHHhhc
Q psy9003 626 LVDECHKAGLFGTPEQLKYLVDECHKAG 653 (1276)
Q Consensus 626 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 653 (1276)
-++++-|..+|.++.+++|.+-.++.+
T Consensus 155 -~TpL~~A~~~~~~~~v~~L~~~~~~~~ 181 (186)
T 3t8k_A 155 -LTALEFVKRCQKPIALKMMEDYIKKYN 181 (186)
T ss_dssp -CCHHHHHHTTTCHHHHHHHHHHHHHHT
T ss_pred -CCHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 677888888899999999999887644
|
| >3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A | Back alignment and structure |
|---|
Probab=98.11 E-value=4.3e-07 Score=94.70 Aligned_cols=118 Identities=12% Similarity=-0.104 Sum_probs=63.5
Q ss_pred CCChhHHHHHhhhcccccCCCChhhhhcccccchhccccCCHhHHHhhcccccccccCCChhhHHHHHHHHhHhccCCCh
Q psy9003 389 FGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTP 468 (1276)
Q Consensus 389 ~~~id~vkyLi~~~h~~~~~~~~~~~~~~vt~lh~a~~~~~~~~~~yli~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~ 468 (1276)
.|++++|++|+. ..+++...+..+. |+||.|+..|+.++|++|+....+.....+...
T Consensus 83 ~g~~~~v~~Ll~-~g~~~~~~~~~g~----t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g----------------- 140 (222)
T 3ehr_A 83 RGNLSWLRECLD-NRVGVNGLDKAGS----TALYWACHGGHKDIVEMLFTQPNIELNQQNKLG----------------- 140 (222)
T ss_dssp HTCHHHHHHHHH-TTCCTTCCCTTSC----CHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTS-----------------
T ss_pred cCcHHHHHHHHh-CCCCccccCCCCC----CHHHHHHHcCCHHHHHHHHcCCCCCccccCCCC-----------------
Confidence 467777777775 3344444555666 888888888888888888775433332222211
Q ss_pred hhHHHhhhhhcccccCCChhhhhhhhhhhhhhccCCCHHHHHHHhhhhcccccCCCHHHHHHHHhhhhhcC
Q psy9003 469 EQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAG 539 (1276)
Q Consensus 469 ~~~~~~v~~~~~a~~~~~~e~~~~lv~~~~~~~~~~~~~~~~~~~t~~~~a~~~g~~e~~~~lv~~~~~~~ 539 (1276)
.|..|.|...|..|.+++|++.+.+++.... ...|+.+.|+..|..++|++|.+..+...
T Consensus 141 ------~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~-----~g~t~l~~A~~~~~~~~l~~l~~~~~~~~ 200 (222)
T 3ehr_A 141 ------DTALHAAAWKGYADIVQLLLAKGARTDLRNI-----EKKLAFDMATNAACASLLKKKQGTDAVRT 200 (222)
T ss_dssp ------CCHHHHHHHHTCHHHHHHHHHHTCCSCCCCT-----TSCCHHHHCCSHHHHHHHC----------
T ss_pred ------CCHHHHHHHcCCHHHHHHHHHcCCCCccccC-----CCCCHHHHhcchhHHHHHHHHhccchhhh
Confidence 3455555555666666666665555554433 23455556666666666666665555544
|
| >3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A | Back alignment and structure |
|---|
Probab=98.09 E-value=6.4e-07 Score=91.12 Aligned_cols=157 Identities=10% Similarity=0.028 Sum_probs=86.4
Q ss_pred cccCCChhhhHHhhhhhcccc------CCCChhhHHHHHhhhcccccCCChhHHHHHhhhcccccCCCChhhhhcccccc
Q psy9003 348 AGLFGTPEQLKYLVDECHKAG------LFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDEC 421 (1276)
Q Consensus 348 a~~~g~ie~~~yLi~~~h~~~------~~~~~e~~~~~~~~~~~a~~~~~id~vkyLi~~~h~~~~~~~~~~~~~~vt~l 421 (1276)
|.+.|+.+++++|+....... .....+.-..--|-.+.|...|+++++++|+. .+++-..+..+. |||
T Consensus 7 aa~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~--~~~~~~~d~~g~----t~L 80 (183)
T 3deo_A 7 GSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVVSEYETPWWTAARKADEQALSQLLE--DRDVDAVDENGR----TAL 80 (183)
T ss_dssp EEEEETTTEEEEEEEETTCCCCEEEEGGGSCHHHHHHHHHHHHHHHHTTCHHHHHHHTT--TSCTTCCCTTSC----CHH
T ss_pred HHHhcCCchhHHHHHHhCCCCccccchhcccccCCCCCCCHHHHHHHcCCHHHHHHHHh--cCCCCCcCCCCC----CHH
Confidence 444556666666664432221 01112222223344445555778888888887 556656666677 888
Q ss_pred hhccccCCHhHHHhhcccccccccCCChhhHHHHHHHHhHhccCCChhhHHHhhhhhcccccCCChhhhhhhhhhhhhhc
Q psy9003 422 HKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAG 501 (1276)
Q Consensus 422 h~a~~~~~~~~~~yli~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~~~~~~~v~~~~~a~~~~~~e~~~~lv~~~~~~~ 501 (1276)
|.|+..|+.++|++|+..+-......+.. . .|..|.|..+|..|.+++|++.+.+++
T Consensus 81 ~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~------------------g-----~tpL~~A~~~~~~~~v~~Ll~~ga~~~ 137 (183)
T 3deo_A 81 LFVAGLGSDKCVRLLAEAGADLDHRDMRG------------------G-----LTALHMAAGYVRPEVVEALVELGADIE 137 (183)
T ss_dssp HHHHHHTCHHHHHHHHHTTCCTTCCCSSS------------------S-----CCHHHHHHHTTCHHHHHHHHHHTCCTT
T ss_pred HHHHHcCCHHHHHHHHHcCCCCCcCCCCC------------------C-----CCHHHHHHhcCcHHHHHHHHHcCCCCc
Confidence 88888888888888776542211111111 1 456666777777777777777766666
Q ss_pred cCCC---HHHHHH--H------hhhhcccccCCCHHHHHHHHh
Q psy9003 502 LFGT---PEQLKY--L------VDECHKAGLFGTPEQLKYLVD 533 (1276)
Q Consensus 502 ~~~~---~~~~~~--~------~t~~~~a~~~g~~e~~~~lv~ 533 (1276)
.... -.+.-+ . .+....|...|..+++++|.+
T Consensus 138 ~~d~~g~tpl~~A~~~~~~~~~~~~l~~a~~~~~~~i~~~L~~ 180 (183)
T 3deo_A 138 VEDERGLTALELAREILKTTPKGNPMQFGRRIGLEKVINVLEG 180 (183)
T ss_dssp CCCTTSCCHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHhccCcccccHHHHHHHcCHHHHHHHHHH
Confidence 5442 111111 1 344455555566666666654
|
| >4aee_A Alpha amylase, catalytic region; hydrolase, hyperthermostable, cyclodextrin hydrolase, GH13; 2.28A {Staphylothermus marinus} | Back alignment and structure |
|---|
Probab=98.07 E-value=4.2e-06 Score=103.83 Aligned_cols=102 Identities=12% Similarity=0.092 Sum_probs=77.1
Q ss_pred cEEEEEEccCCceEEEEeeccCCCcce----------EEEEEccCccccceEEEEEecCCC-----------CCC--cc-
Q psy9003 74 SVRCFEWAPSAQQLYLTGNVSLTPWSI----------MEEASLSSIKLIQSIQYILTGVFG-----------TPE--QL- 129 (1276)
Q Consensus 74 g~~f~~wAP~A~~v~l~gdfn~~~w~m----------~~~~~~~~~~~g~~yky~i~~~~g-----------rp~--~a- 129 (1276)
.+||++++ ++.+|.|..+- ..|.| +|++.|+ ...+-.|.|+|.+.++ ++. ..
T Consensus 135 ~~r~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~Y~f~~~~~~~~~~~~~~g~~~~~~~~~~~ 210 (696)
T 4aee_A 135 IIRLIAPT-EINEPLIDLGN--EIREPLTKHVVGDNIVYQYIIP-SRSILRYRFIFNYNDKKLFYGDEGVSENSSYIVVN 210 (696)
T ss_dssp EEEEEEET-TSCCCEEECSS--CEECCSEEEEETTEEEEEEEEE-CCSEEEEEEEEEETTEEEEEETTEEETTCCCEEEE
T ss_pred EEEEEEcC-CCCEEEEEcCC--cceeeeeeeecCCceEEEEEEc-CCCeEEEEEEEEECCeEEEEeCCCCccCCcccccc
Confidence 67777787 77888887665 34442 8999999 7778889999976443 111 00
Q ss_pred ccccc--------------ccccccCC-------------------------ChHHHHHHHHHHHHhcCc----------
Q psy9003 130 KYLVD--------------ECHKAGLF-------------------------GTPEQLKYLVDECHKAGL---------- 160 (1276)
Q Consensus 130 s~~~d--------------e~h~gs~~-------------------------~y~e~a~~li~y~~~~~y---------- 160 (1276)
+.-.| +||..||. +++.|.+.| ||+|++|+
T Consensus 211 ~~f~~~~~~p~W~~~~viYqI~p~rF~~~~~~n~~~~~~~w~~~~~~~~~gGdl~Gi~~kL-dyLk~LGvt~IwL~Pi~~ 289 (696)
T 4aee_A 211 SKYIPGVDKPRWYMGTVYYQIFIDSFDNGDPNNDPPNRIKKTVPREYGYYGGDLAGIMKHI-DHLEDLGVETIYLTPIFS 289 (696)
T ss_dssp GGGCCBCSSCCTTSSCCEEEECGGGTCCCCGGGCCSSCCCCCSSCCSSCCCCCHHHHHTTH-HHHHHHTCCEEEECCCEE
T ss_pred ccccCCCCCcchhhcCeEEEEehHHhcCCCCCCCccccccccCCcccccCCcCHHHHHHHh-HHHHHcCCCEEEECCccc
Confidence 00012 88888876 378888886 99999998
Q ss_pred ------------------CCCHHHHHHHHHHHHHcCCC
Q psy9003 161 ------------------FGTPEQLKYLVDECHKAGLF 180 (1276)
Q Consensus 161 ------------------ygtp~~l~~~vd~~h~~~i~ 180 (1276)
|||++||+.||++||+.||+
T Consensus 290 s~~~~GYd~~Dy~~idp~~Gt~~df~~Lv~~aH~~Gik 327 (696)
T 4aee_A 290 STSYHRYDTIDYKSIDKYLGTMEDFEKLVQVLHSRKIK 327 (696)
T ss_dssp ESSSSCCSEEEEEEECGGGCCHHHHHHHHHHHHHTTCE
T ss_pred CCCCCCcCcccccccCcccCCHHHHHHHHHHHHHCCCE
Confidence 99999999999999999998
|
| >3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 | Back alignment and structure |
|---|
Probab=98.02 E-value=1.1e-06 Score=84.74 Aligned_cols=125 Identities=14% Similarity=0.065 Sum_probs=81.9
Q ss_pred CCChhhhhcccccchhccccCCHhHHHhhcccccccccCCChhhHHHHHHHHhHhccCCChhhHHHhhhhhcccccCCCh
Q psy9003 408 FGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTP 487 (1276)
Q Consensus 408 ~~~~~~~~~~vt~lh~a~~~~~~~~~~yli~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~~~~~~~v~~~~~a~~~~~~ 487 (1276)
..+.++. |+||.|+..|+.+++++|+..+.- . +..+... .|..|.|...|..
T Consensus 5 ~~~~~g~----t~L~~A~~~~~~~~~~~Ll~~g~~-~------------------~~~~~~g-----~t~L~~A~~~~~~ 56 (137)
T 3c5r_A 5 FTNHRGE----TLLHIASIKGDIPSVEYLLQNGSD-P------------------NVKDHAG-----WTPLHEACNHGHL 56 (137)
T ss_dssp CCCTTCC----CHHHHHHHHTCHHHHHHHHHTTCC-S------------------CCCCTTS-----CCHHHHHHHTTCH
T ss_pred CcCCCCC----CHHHHHHHcCCHHHHHHHHHcCCC-C------------------CcCCCCC-----CCHHHHHHHcCCH
Confidence 5566777 999999999999999998865321 1 1111111 4666777777777
Q ss_pred hhhhhhhhhhhhhccCCCHHHHHHHhhhhcccccCCCHHHHHHHHhhhhhcCCCCCcchhhhhhhhhhccccCCCHHHHH
Q psy9003 488 EQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLK 567 (1276)
Q Consensus 488 e~~~~lv~~~~~~~~~~~~~~~~~~~t~~~~a~~~g~~e~~~~lv~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~e~~~ 567 (1276)
|.+++|++....++.... ...|+.+.|+..|+.|++++|++.+++++.-+. +..|..+.|...+..+.++
T Consensus 57 ~~~~~Ll~~g~~~~~~~~-----~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~-----~g~tpl~~A~~~~~~~~l~ 126 (137)
T 3c5r_A 57 KVVELLLQHKALVNTTGY-----QNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNI-----FGLRPVDYTDDESMKSLLL 126 (137)
T ss_dssp HHHHHHHHTTCCTTCCCG-----GGCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT-----TSCCGGGGCCCHHHHHHHS
T ss_pred HHHHHHHHcCCcccCcCC-----CCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCC-----CCCCHHHHHhhccHHHHHh
Confidence 888888777766665543 345777888888888888888887777765444 3344444455555555555
Q ss_pred HHH
Q psy9003 568 YLV 570 (1276)
Q Consensus 568 ~l~ 570 (1276)
+|.
T Consensus 127 ~l~ 129 (137)
T 3c5r_A 127 LPE 129 (137)
T ss_dssp CC-
T ss_pred hcc
Confidence 543
|
| >4gqr_A Pancreatic alpha-amylase; glycosyl hydrolase, diabetes, obesity, digestion, glycosidas inhibition, flavonol, drug design; HET: NAG MYC; 1.20A {Homo sapiens} PDB: 1cpu_A* 1bsi_A 1u2y_A* 1u30_A* 1u33_A* 1xcw_A* 1xcx_A* 1xd0_A* 1xd1_A* 2qmk_A* 2qv4_A* 3bai_A* 3baj_A* 3baw_A* 3ij7_A* 1hny_A* 3ij9_A* 3ij8_A* 4gqq_A* 1kgw_A* ... | Back alignment and structure |
|---|
Probab=97.96 E-value=2.8e-06 Score=98.94 Aligned_cols=44 Identities=14% Similarity=0.187 Sum_probs=42.4
Q ss_pred cccccCCChHHHHHHHHHHHHhcCc-----------------------------------CCCHHHHHHHHHHHHHcCCC
Q psy9003 136 CHKAGLFGTPEQLKYLVDECHKAGL-----------------------------------FGTPEQLKYLVDECHKAGLF 180 (1276)
Q Consensus 136 ~h~gs~~~y~e~a~~li~y~~~~~y-----------------------------------ygtp~~l~~~vd~~h~~~i~ 180 (1276)
||+.+| +|++||+++.+||++||| |||++||+.||++||++||+
T Consensus 14 ~~~f~W-~w~~ia~e~~~yl~~~G~~~v~~~P~~e~~~~~~~~~~~~~~Y~~~dy~i~~~~Gt~~df~~lv~~aH~~Gi~ 92 (496)
T 4gqr_A 14 VHLFEW-RWVDIALECERYLAPKGFGGVQVSPPNENVAIYNPFRPWWERYQPVSYKLCTRSGNEDEFRNMVTRCNNVGVR 92 (496)
T ss_dssp EEETTC-CHHHHHHHHHHTTTTTTCCEEEECCCSCBBCCTTTTSCGGGGGSBSCSCSCBTTBCHHHHHHHHHHHHHTTCE
T ss_pred EEecCC-CHHHHHHHHHHHHHHhCCCEEEeCccccCccCCCCCCCcccccCccCceeCCCCCCHHHHHHHHHHHHHCCCE
Confidence 799999 899999999999999999 89999999999999999998
|
| >3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A | Back alignment and structure |
|---|
Probab=97.90 E-value=1e-06 Score=94.34 Aligned_cols=119 Identities=10% Similarity=-0.038 Sum_probs=85.9
Q ss_pred cCCChhhhhhhhhhhhhhccCCCHHHHHHHhhhhcccccCCCHHHHHHHHhhhhhcCCCCCcchhhhhhhhhhccccCCC
Q psy9003 483 LFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGT 562 (1276)
Q Consensus 483 ~~~~~e~~~~lv~~~~~~~~~~~~~~~~~~~t~~~~a~~~g~~e~~~~lv~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~ 562 (1276)
..|+.+.+..+.....+.+ ....|+.+.|+..|+++++++|+. +.++|..+. +.-|..|.|+..|+
T Consensus 24 ~~g~~~~~~~~~~~~~~~~--------~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~-----~g~t~L~~A~~~g~ 89 (244)
T 3ui2_A 24 KDGHSPSWVPSSYIAADVV--------SEYETPWWTAARKADEQALSQLLE-DRDVDAVDE-----NGRTALLFVAGLGS 89 (244)
T ss_dssp SSCCCCEEEEGGGSCHHHH--------HHHHHHHHHHHTTTCHHHHHHTTT-TCCTTCBCT-----TSCBHHHHHHHHTC
T ss_pred HcCCCcccccccccccccc--------cCCCCHHHHHHHcCCHHHHHHHHc-CCCCCCcCC-----CCCCHHHHHHHCCC
Confidence 4455555444443333332 345789999999999999999999 666665444 45567777779999
Q ss_pred HHHHHHHHHhhhhccCCC-ChhhhhhhhhhhcccccCCCHHHHHHHHhhhhhccCCCCh
Q psy9003 563 PEQLKYLVDECHKAGLFG-TPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTP 620 (1276)
Q Consensus 563 ~e~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~ 620 (1276)
++.+++|++.++++|... .. ..|..+-|..+|+++.+++|++.++++|.+-..
T Consensus 90 ~~~v~~Ll~~ga~~~~~~~~~-----g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~ 143 (244)
T 3ui2_A 90 DKCVRLLAEAGADLDHRDMRG-----GLTALHMAAGYVRPEVVEALVELGADIEVEDER 143 (244)
T ss_dssp HHHHHHHHHTTCCTTCCCSSS-----CCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT
T ss_pred HHHHHHHHHcCCCCCcCCCCC-----CCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCC
Confidence 999999999999988333 11 135555555889999999999999988765443
|
| >1gjw_A Maltodextrin glycosyltransferase; alpha-amylase, maltosyltransferase; HET: MAL GLC; 2.1A {Thermotoga maritima} SCOP: b.71.1.1 c.1.8.1 PDB: 1gju_A* | Back alignment and structure |
|---|
Probab=97.89 E-value=1.6e-06 Score=106.44 Aligned_cols=23 Identities=4% Similarity=-0.091 Sum_probs=21.4
Q ss_pred EEEEEccCccccceEEEEEecCCC
Q psy9003 101 MEEASLSSIKLIQSIQYILTGVFG 124 (1276)
Q Consensus 101 ~~~~~~~~~~~g~~yky~i~~~~g 124 (1276)
+|++|||++.+|+ |||+|.+++|
T Consensus 17 ~w~~~i~~~~~g~-Y~y~v~~~~g 39 (637)
T 1gjw_A 17 KRIYAVPKLWIPG-FFKKFDEKSG 39 (637)
T ss_dssp CCCEEECGGGSCT-TCCCCEEETT
T ss_pred eEEEEeCCCCCCc-ceEEEECCCC
Confidence 7999999999999 9999998777
|
| >3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A | Back alignment and structure |
|---|
Probab=97.85 E-value=2.8e-06 Score=88.47 Aligned_cols=128 Identities=13% Similarity=-0.024 Sum_probs=88.8
Q ss_pred hhhhcccccCCChhhhhhhhhhhhhhccCCCHHHHHHHhhhhcccccCCCHHHHHHHHhh-hhhcCCCCCcchhhhhhhh
Q psy9003 475 VDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDE-CHKAGLFGTPEQLKYLVDE 553 (1276)
Q Consensus 475 v~~~~~a~~~~~~e~~~~lv~~~~~~~~~~~~~~~~~~~t~~~~a~~~g~~e~~~~lv~~-~~~~~~~~t~~~l~~~~~~ 553 (1276)
-|..|.|...|+.+.+++|++...++|.... ...|..+.|+..|+++++++|+.. +.++|.-+. +..|.
T Consensus 74 ~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~-----~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~-----~g~tp 143 (222)
T 3ehr_A 74 DNPLHEAAKRGNLSWLRECLDNRVGVNGLDK-----AGSTALYWACHGGHKDIVEMLFTQPNIELNQQNK-----LGDTA 143 (222)
T ss_dssp SCHHHHHHHHTCHHHHHHHHHTTCCTTCCCT-----TSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCT-----TSCCH
T ss_pred ccccccccccCcHHHHHHHHhCCCCccccCC-----CCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCC-----CCCCH
Confidence 3677888888889999999888877776554 457888889999999999999987 777775554 44566
Q ss_pred hhccccCCCHHHHHHHHHhhhhccCCCChhhhhhhhhhhcccccCCCHHHHHHHHhhhhhccCC
Q psy9003 554 CHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLF 617 (1276)
Q Consensus 554 ~~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~ 617 (1276)
.+.|...|+.|.+++|++.++++|.....- .|..+-|...|..+.+++|.+.++..+++
T Consensus 144 L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g-----~t~l~~A~~~~~~~~l~~l~~~~~~~~~~ 202 (222)
T 3ehr_A 144 LHAAAWKGYADIVQLLLAKGARTDLRNIEK-----KLAFDMATNAACASLLKKKQGTDAVRTLS 202 (222)
T ss_dssp HHHHHHHTCHHHHHHHHHHTCCSCCCCTTS-----CCHHHHCCSHHHHHHHC------------
T ss_pred HHHHHHcCCHHHHHHHHHcCCCCccccCCC-----CCHHHHhcchhHHHHHHHHhccchhhhcc
Confidence 667778899999999999988888433332 45566666788899999988888776544
|
| >3mi6_A Alpha-galactosidase; NESG, structural genomics, PSI-2, protein structure initiati northeast structural genomics consortium, hydrolase; 2.70A {Lactobacillus brevis} | Back alignment and structure |
|---|
Probab=97.74 E-value=6.6e-05 Score=93.61 Aligned_cols=91 Identities=12% Similarity=0.170 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHHcCCEEEEEEeccccCCcccCCCcCCCCCCCcccccCCCCCCCCC-CCcCCCCCcHHHHHHHHHHHHHH
Q psy9003 1037 EQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLW-DSRLFNYSEIEVLRFLLSNLRWY 1115 (1276)
Q Consensus 1037 eEfK~LV~alHk~GI~VILDvV~NHt~~~~~~~~~~f~g~~~~Yy~~~~~g~~~~W-~g~~LN~~np~Vr~~Iidsl~~W 1115 (1276)
+.|+.||+.+|++||++.+-+.+..++.+.+. | ...+.|+...+++....| +...||+.||+|++++.+.+..+
T Consensus 393 ~Gl~~lv~~ih~~Glk~glW~~Pe~v~~dS~l----~-~~hPdw~l~~~~g~~~~~r~~~vLD~tnPevr~~i~~~l~~l 467 (745)
T 3mi6_A 393 DGIEHFSQAVHQQGMKFGLWFEPEMVSVDSDL----Y-QQHPDWLIHAPKSTPTPGRHQFVLDMARPEVVDYLFKLMSQM 467 (745)
T ss_dssp THHHHHHHHHHHTTCEEEEEECTTEECSSSSH----H-HHCGGGBCCCTTCCCCCSSSCEEBCTTCHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHCCCEEEEEEcccccCCCCHH----H-HhCcceEEEcCCCceeecCCeEEECCCCHHHHHHHHHHHHHH
Confidence 46999999999999999999998776665321 1 112456655554443222 34569999999999999999999
Q ss_pred HHhCCCcEEccCCcccc
Q psy9003 1116 LDEYQFDGFRFDGVTSM 1132 (1276)
Q Consensus 1116 v~eygVDGFRfD~a~~L 1132 (1276)
++++|||||.+|.-..+
T Consensus 468 l~~~GIDy~K~D~nr~i 484 (745)
T 3mi6_A 468 IESANLDYIKWDMNRYA 484 (745)
T ss_dssp HHHHTCSEEEECCCSCC
T ss_pred HHHCCCCEEEECCCCCC
Confidence 99999999999976555
|
| >3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 | Back alignment and structure |
|---|
Probab=97.72 E-value=8.1e-06 Score=78.62 Aligned_cols=118 Identities=14% Similarity=0.052 Sum_probs=71.5
Q ss_pred hhhhcccccCCCHHHHHHHHhhhhhcCCCCCcchhhhhhhhhhccccCCCHHHHHHHHHhhhhccCCCChhhhhhhhhhh
Q psy9003 513 VDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDEC 592 (1276)
Q Consensus 513 ~t~~~~a~~~g~~e~~~~lv~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 592 (1276)
.|..+.|+..|+++++++|++.+.+++..+. +..|..+.|+..|+++.+++|++.++++|...... .|..
T Consensus 11 ~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~-----~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g-----~t~L 80 (137)
T 3c5r_A 11 ETLLHIASIKGDIPSVEYLLQNGSDPNVKDH-----AGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQN-----DSPL 80 (137)
T ss_dssp CCHHHHHHHHTCHHHHHHHHHTTCCSCCCCT-----TSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCGGG-----CCHH
T ss_pred CCHHHHHHHcCCHHHHHHHHHcCCCCCcCCC-----CCCCHHHHHHHcCCHHHHHHHHHcCCcccCcCCCC-----CCHH
Confidence 4666777777777777777777666664443 34455555667777777777777776666332221 3455
Q ss_pred cccccCCCHHHHHHHHhhhhhccCCCChhhhhhhHHHhhhccCCCCHHHHHHH
Q psy9003 593 HKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYL 645 (1276)
Q Consensus 593 ~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 645 (1276)
+-|..+|++|.+++|++.+++++.+-..- .++.+-|...+..+.+++|
T Consensus 81 ~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g-----~tpl~~A~~~~~~~~l~~l 128 (137)
T 3c5r_A 81 HDAAKNGHVDIVKLLLSYGASRNAVNIFG-----LRPVDYTDDESMKSLLLLP 128 (137)
T ss_dssp HHHHHTTCHHHHHHHHHTTCCTTCCCTTS-----CCGGGGCCCHHHHHHHSCC
T ss_pred HHHHHcCCHHHHHHHHHcCCCCCCCCCCC-----CCHHHHHhhccHHHHHhhc
Confidence 55557777777777777777766543322 3444444444444444433
|
| >3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A | Back alignment and structure |
|---|
Probab=97.72 E-value=2.5e-06 Score=86.68 Aligned_cols=103 Identities=11% Similarity=0.024 Sum_probs=79.2
Q ss_pred HHHHHHHhhhhcccccCCCHHHHHHHHhhhhhcCCCCCcchhhhhhhhhhccccCCCHHHHHHHHHhhhhccCCC-Chhh
Q psy9003 506 PEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFG-TPEQ 584 (1276)
Q Consensus 506 ~~~~~~~~t~~~~a~~~g~~e~~~~lv~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~-~~~~ 584 (1276)
.+.-....|+.+.|+..|+++.+++|++ ..++|..+. ..-|..+.|...|+.+.+++|++.++++|... ..
T Consensus 38 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~-----~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~-- 109 (183)
T 3deo_A 38 ADVVSEYETPWWTAARKADEQALSQLLE-DRDVDAVDE-----NGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRG-- 109 (183)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHTT-TSCTTCCCT-----TSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSS--
T ss_pred ccCCCCCCCHHHHHHHcCCHHHHHHHHh-cCCCCCcCC-----CCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCC--
Confidence 3444566899999999999999999999 666665444 45566677779999999999999999888333 21
Q ss_pred hhhhhhhhcccccCCCHHHHHHHHhhhhhccCCCC
Q psy9003 585 LKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGT 619 (1276)
Q Consensus 585 ~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~ 619 (1276)
..|..+-|..+|++|.+++|++.++++|.+-.
T Consensus 110 ---g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~ 141 (183)
T 3deo_A 110 ---GLTALHMAAGYVRPEVVEALVELGADIEVEDE 141 (183)
T ss_dssp ---SCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCT
T ss_pred ---CCCHHHHHHhcCcHHHHHHHHHcCCCCcCCCC
Confidence 13555555689999999999999998876543
|
| >3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A | Back alignment and structure |
|---|
Probab=97.68 E-value=1.3e-05 Score=75.81 Aligned_cols=96 Identities=17% Similarity=0.033 Sum_probs=67.5
Q ss_pred hhhcccccCCCHHHHHHHHhhhhhcCCCCCcchhhhhhhhhhccccCCCHHHHHHHHHhhhhccCCCChhhhhhhhhhhc
Q psy9003 514 DECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECH 593 (1276)
Q Consensus 514 t~~~~a~~~g~~e~~~~lv~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 593 (1276)
|..+.|+..|+++.+++|++.+.+++..+. +.-|-.+.|+..|+++.+++|++.++++|.....- .|..+
T Consensus 9 ~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~-----~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g-----~tpL~ 78 (123)
T 3aaa_C 9 KEFMWALKNGDLDEVKDYVAKGEDVNRTLE-----GGRKPLHYAADCGQLEILEFLLLKGADINAPDKHH-----ITPLL 78 (123)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTCCTTSCCT-----TSSCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTS-----CCHHH
T ss_pred hHHHHHHHcCCHHHHHHHHHcCCCcCccCC-----CCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCC-----CCHHH
Confidence 566778888888888888887776664443 34455566668888888888888888777322221 34555
Q ss_pred ccccCCCHHHHHHHHhhhhhccCCCC
Q psy9003 594 KAGLFGTPEQLKYLVDECHKAGLFGT 619 (1276)
Q Consensus 594 ~~~~~~~~e~~~~l~~~~~~~~~~~~ 619 (1276)
-|...|++|.+++|++.+++++.+-.
T Consensus 79 ~A~~~~~~~~v~~Ll~~ga~~~~~~~ 104 (123)
T 3aaa_C 79 SAVYEGHVSCVKLLLSKGADKTVKGP 104 (123)
T ss_dssp HHHHHTCHHHHHHHHHTTCCTTCCCT
T ss_pred HHHHcCCHHHHHHHHHcCCCCCCcCC
Confidence 55578888888888888887766543
|
| >2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.66 E-value=2.6e-05 Score=86.81 Aligned_cols=136 Identities=12% Similarity=-0.043 Sum_probs=85.4
Q ss_pred hhcccccCCCHHHHHHHHhhhhhcCCC------CCcchhhhhhhhhhcccc---CCCHHHHHHHHHhhhhccCCCChhhh
Q psy9003 515 ECHKAGLFGTPEQLKYLVDECHKAGLF------GTPEQLKYLVDECHKAGL---FGTPEQLKYLVDECHKAGLFGTPEQL 585 (1276)
Q Consensus 515 ~~~~a~~~g~~e~~~~lv~~~~~~~~~------~t~~~l~~~~~~~~~~~~---~~~~e~~~~l~~~~~~~~~~~~~~~~ 585 (1276)
..+.|...|+++.+++|+..+.++|.. +. ..-|..+.|.. +|+++.+++|++.++++|.....-
T Consensus 154 ~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~-----~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~~d~~G-- 226 (301)
T 2b0o_E 154 RLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQA-----PEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADG-- 226 (301)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCS-----CEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTCCCTTC--
T ss_pred HHhhhhhccCHHHHHHHHhcCCcccccCCCcccCC-----CCccHHHHHHHhcccCcHHHHHHHHhcCCCCCCCCCCC--
Confidence 455677788888888888777777641 22 22233333333 488888888888888877433222
Q ss_pred hhhhhhhcccccCCCHHHHHHHHhhhhhccCCCChhhhhhhHHHhhhccCCCCHHHHHHHHHHHHhhcCCCChHHHhhhh
Q psy9003 586 KYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLV 665 (1276)
Q Consensus 586 ~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 665 (1276)
.|..+.|...|++|.+++|++.++++|.+-..- .++++-|..+|..|.+++|++.-... .-
T Consensus 227 ---~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G-----~TpL~~A~~~~~~~iv~~Ll~~ga~~-----------g~ 287 (301)
T 2b0o_E 227 ---NTALHYAALYNQPDCLKLLLKGRALVGTVNEAG-----ETALDIARKKHHKECEELLEQAQAGT-----------FA 287 (301)
T ss_dssp ---CCHHHHHHHTTCHHHHHHHHHTTCCCSCCCTTS-----CCHHHHHHHHTCHHHHHHHHHHHHHT-----------TS
T ss_pred ---CCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCC-----CCHHHHHHHcCCHHHHHHHHHhcCCC-----------CC
Confidence 566666668888899999988888887654333 45566666668888888888754432 23
Q ss_pred hhhhhcccCCC
Q psy9003 666 DECHKAGLFGT 676 (1276)
Q Consensus 666 ~~~~~~~~~~~ 676 (1276)
+.+|.|..+|+
T Consensus 288 tpLh~A~~~g~ 298 (301)
T 2b0o_E 288 FPLHVDYSWVI 298 (301)
T ss_dssp SCCC-------
T ss_pred ChhHHHHhcCC
Confidence 45666666665
|
| >1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 | Back alignment and structure |
|---|
Probab=97.65 E-value=2.3e-05 Score=70.84 Aligned_cols=90 Identities=20% Similarity=0.109 Sum_probs=64.4
Q ss_pred hhhhcccccCCCHHHHHHHHhhhhhcCCCCCcchhhhhhhhhhccccCCCHHHHHHHHHhhhhccCCCChhhhhhhhhhh
Q psy9003 513 VDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDEC 592 (1276)
Q Consensus 513 ~t~~~~a~~~g~~e~~~~lv~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 592 (1276)
.|+.+.|+..|++|++++|++.+.++|..+. ...|..+.|...|++|.+++|++.++++|....+- .|..
T Consensus 3 ~t~L~~A~~~~~~~~v~~Ll~~g~~~n~~d~-----~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g-----~t~l 72 (93)
T 1n0q_A 3 RTPLHLAARNGHLEVVKLLLEAGADVNAKDK-----NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNG-----RTPL 72 (93)
T ss_dssp CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCT-----TSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTS-----CCHH
T ss_pred CcHHHHHHHcCCHHHHHHHHHcCCCCcccCC-----CCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCC-----CCHH
Confidence 3677788888888888888888777765444 34555666668888888888888888877333222 4555
Q ss_pred cccccCCCHHHHHHHHhhhh
Q psy9003 593 HKAGLFGTPEQLKYLVDECH 612 (1276)
Q Consensus 593 ~~~~~~~~~e~~~~l~~~~~ 612 (1276)
+-|...|+.|.+++|++.++
T Consensus 73 ~~A~~~~~~~~~~~Ll~~ga 92 (93)
T 1n0q_A 73 HLAARNGHLEVVKLLLEAGA 92 (93)
T ss_dssp HHHHHTTCHHHHHHHHHTTC
T ss_pred HHHHHcCCHHHHHHHHHcCC
Confidence 55567888888888887765
|
| >3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A | Back alignment and structure |
|---|
Probab=97.64 E-value=1.7e-05 Score=84.90 Aligned_cols=92 Identities=12% Similarity=0.023 Sum_probs=78.3
Q ss_pred hhhhcccccCCChhhhhhhhhhhhhhccCCCHHHHHHHhhhhcccccCCCHHHHHHHHhhhhhcCCCC-Ccchhhhhhhh
Q psy9003 475 VDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFG-TPEQLKYLVDE 553 (1276)
Q Consensus 475 v~~~~~a~~~~~~e~~~~lv~~~~~~~~~~~~~~~~~~~t~~~~a~~~g~~e~~~~lv~~~~~~~~~~-t~~~l~~~~~~ 553 (1276)
-|..|.|..+|+.+.+++|++ ...+|.... ...|+.+.|+..|+++++++|++.++++|..+ . ...|.
T Consensus 46 ~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~-----~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~-----~g~t~ 114 (244)
T 3ui2_A 46 ETPWWTAARKADEQALSQLLE-DRDVDAVDE-----NGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMR-----GGLTA 114 (244)
T ss_dssp HHHHHHHHTTTCHHHHHHTTT-TCCTTCBCT-----TSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSS-----SCCCH
T ss_pred CCHHHHHHHcCCHHHHHHHHc-CCCCCCcCC-----CCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCC-----CCCCH
Confidence 688899999999999999999 667776554 45799999999999999999999998888544 3 35566
Q ss_pred hhccccCCCHHHHHHHHHhhhhcc
Q psy9003 554 CHKAGLFGTPEQLKYLVDECHKAG 577 (1276)
Q Consensus 554 ~~~~~~~~~~e~~~~l~~~~~~~~ 577 (1276)
.+.|...|+.+.+++|++.++++|
T Consensus 115 L~~A~~~g~~~~v~~Ll~~ga~~~ 138 (244)
T 3ui2_A 115 LHMAAGYVRPEVVEALVELGADIE 138 (244)
T ss_dssp HHHHHHTTCHHHHHHHHHTTCCTT
T ss_pred HHHHHHcCCHHHHHHHHHCCCCCC
Confidence 677779999999999999999988
|
| >2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.55 E-value=3.7e-05 Score=85.53 Aligned_cols=131 Identities=11% Similarity=-0.080 Sum_probs=97.9
Q ss_pred hhhhcccccCCChhhhhhhhhhhhhhccCCCHH-HHHHHhhhhcccccC---CCHHHHHHHHhhhhhcCCCCCcchhhhh
Q psy9003 475 VDECHKAGLFGTPEQLKYLVDECHKAGLFGTPE-QLKYLVDECHKAGLF---GTPEQLKYLVDECHKAGLFGTPEQLKYL 550 (1276)
Q Consensus 475 v~~~~~a~~~~~~e~~~~lv~~~~~~~~~~~~~-~~~~~~t~~~~a~~~---g~~e~~~~lv~~~~~~~~~~t~~~l~~~ 550 (1276)
.+..+.|..+|+++.+++|+....++|...... .-....|..+.|+.. |+++++++|+..++++|..+. +.
T Consensus 152 ~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~~d~-----~G 226 (301)
T 2b0o_E 152 PQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAA-----DG 226 (301)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTCCCT-----TC
T ss_pred HHHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCCCCC-----CC
Confidence 345677888999999999998888877521000 001235677777765 999999999999998886554 45
Q ss_pred hhhhhccccCCCHHHHHHHHHhhhhccCCCChhhhhhhhhhhcccccCCCHHHHHHHHhhhhhcc
Q psy9003 551 VDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAG 615 (1276)
Q Consensus 551 ~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~ 615 (1276)
-|..|.|...|+.+.+++|++.++++|..... ..|..+-|..+|+.|.+++|++.+++.|
T Consensus 227 ~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~-----G~TpL~~A~~~~~~~iv~~Ll~~ga~~g 286 (301)
T 2b0o_E 227 NTALHYAALYNQPDCLKLLLKGRALVGTVNEA-----GETALDIARKKHHKECEELLEQAQAGTF 286 (301)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHTTCCCSCCCTT-----SCCHHHHHHHHTCHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCC-----CCCHHHHHHHcCCHHHHHHHHHhcCCCC
Confidence 56677777999999999999999998833322 2455666668899999999999998854
|
| >3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A | Back alignment and structure |
|---|
Probab=97.54 E-value=6.3e-05 Score=86.65 Aligned_cols=124 Identities=8% Similarity=-0.047 Sum_probs=89.6
Q ss_pred hhhhcccccC-CCHHHHHHHHhhhhhcCCCCCcchhhhhhhhhhccccCCCHHHHHHHHHhhhhccCCCChhhhhhhhhh
Q psy9003 513 VDECHKAGLF-GTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDE 591 (1276)
Q Consensus 513 ~t~~~~a~~~-g~~e~~~~lv~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~ 591 (1276)
-|..+.|... |+++.+++|+..++++|..+.+ ....|-.|.|...|+++.+++|++.++++|..... ..|.
T Consensus 200 ~t~L~~Aa~~~g~~~~v~~LL~~Gadvn~~~~~---~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~~d~~-----G~Tp 271 (368)
T 3jue_A 200 GALLFRASGHPPSLPTMADALAHGADVNWVNGG---QDNATPLIQATAANSLLACEFLLQNGANVNQADSA-----GRGP 271 (368)
T ss_dssp HHHHHHHTSSSCCHHHHHHHHHTTCCTTCCCTT---TTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT-----SCCH
T ss_pred CcHHHHHHHccCCHHHHHHHHHcCCCCCccccc---cCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCC-----CCCH
Confidence 3566777888 9999999999888888754421 13445556666889999999999988888733222 2455
Q ss_pred hcccccCCCHHHHHHHHhhhhhccCCCChhhhhhhHHHhhhccCCCCHHHHHHHHHHH
Q psy9003 592 CHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDEC 649 (1276)
Q Consensus 592 ~~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 649 (1276)
.+-|..+|+++.+++|+..++++|.+-..- .++++-|...|+.+.+++|..+-
T Consensus 272 Lh~A~~~g~~~~v~~LL~~Gad~~~~d~~G-----~TpL~~A~~~g~~~iv~lLl~~~ 324 (368)
T 3jue_A 272 LHHATILGHTGLACLFLKRGADLGARDSEG-----RDPLTIAMETANADIVTLLRLAK 324 (368)
T ss_dssp HHHHHHHTCHHHHHHHHHTTCCTTCCCTTS-----CCHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHcCcHHHHHHHHHCcCCCCCcCCCC-----CCHHHHHHHCCCHHHHHHHHHcC
Confidence 666668889999999999888887654433 56667777778888888888654
|
| >3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* | Back alignment and structure |
|---|
Probab=97.52 E-value=5.9e-05 Score=89.36 Aligned_cols=124 Identities=13% Similarity=0.007 Sum_probs=82.9
Q ss_pred hhhcccccCCCHHHHHHHHhhhhhcCCC-CCcchhhhhhhhhhcc---ccCCCHHHHHHHHHhhhhccCCCChhhhhhhh
Q psy9003 514 DECHKAGLFGTPEQLKYLVDECHKAGLF-GTPEQLKYLVDECHKA---GLFGTPEQLKYLVDECHKAGLFGTPEQLKYLV 589 (1276)
Q Consensus 514 t~~~~a~~~g~~e~~~~lv~~~~~~~~~-~t~~~l~~~~~~~~~~---~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~~~ 589 (1276)
+..+.|+..|+++.++.|+..++++|.. ...+.-....|..|.| ...|+++.+++|++.++++|.....- .
T Consensus 134 ~~L~~A~~~g~~~~v~~ll~~g~~~n~~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~ga~vn~~d~~g-----~ 208 (497)
T 3lvq_E 134 QRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADG-----N 208 (497)
T ss_dssp HHHHHHHHHTCHHHHHHHHHTTCCSSSCBCCSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHHHSCCTTCCCSSS-----C
T ss_pred HHHHHHHhccCHHHHHHHHhhcccccCCCCCcccccccchHHHHHHHhcccccHHHHHHHHHcCCCCCccCCCC-----C
Confidence 3467788899999999999999888743 0001111344455555 34899999999999998888433322 4
Q ss_pred hhhcccccCCCHHHHHHHHhhhhhccCCCChhhhhhhHHHhhhccCCCCHHHHHHHHH
Q psy9003 590 DECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVD 647 (1276)
Q Consensus 590 ~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 647 (1276)
|..|-|...|++|.+++|++.++++|.+-+.- .++++-|...|+.+.+++|++
T Consensus 209 TpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g-----~tpl~~A~~~~~~~~~~~Ll~ 261 (497)
T 3lvq_E 209 TALHYAALYNQPDCLKLLLKGRALVGTVNEAG-----ETALDIARKKHHKECEELLEQ 261 (497)
T ss_dssp CHHHHHTTTTCHHHHHHHHHTCCCCSCCCTTC-----CCHHHHHHHTTCHHHHHHHHH
T ss_pred cHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCC-----CCHHHHHHHcCCHHHHHHHHH
Confidence 66666668899999999999998887664332 344444444455555555554
|
| >3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A | Back alignment and structure |
|---|
Probab=97.52 E-value=2.4e-05 Score=74.02 Aligned_cols=93 Identities=16% Similarity=0.010 Sum_probs=78.2
Q ss_pred hhhcccccCCChhhhhhhhhhhhhhccCCCHHHHHHHhhhhcccccCCCHHHHHHHHhhhhhcCCCCCcchhhhhhhhhh
Q psy9003 476 DECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECH 555 (1276)
Q Consensus 476 ~~~~~a~~~~~~e~~~~lv~~~~~~~~~~~~~~~~~~~t~~~~a~~~g~~e~~~~lv~~~~~~~~~~t~~~l~~~~~~~~ 555 (1276)
|..|.|..+|+.|.+++|++...++|.... ...|+.+.|+..|+++++++|++.++++|.-+. +.-|..+
T Consensus 9 ~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~-----~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~-----~g~tpL~ 78 (123)
T 3aaa_C 9 KEFMWALKNGDLDEVKDYVAKGEDVNRTLE-----GGRKPLHYAADCGQLEILEFLLLKGADINAPDK-----HHITPLL 78 (123)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTCCTTSCCT-----TSSCHHHHHHHTTCHHHHHHHHTTTCCTTCCCT-----TSCCHHH
T ss_pred hHHHHHHHcCCHHHHHHHHHcCCCcCccCC-----CCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCC-----CCCCHHH
Confidence 667888899999999999998888776654 457899999999999999999999888875544 4456667
Q ss_pred ccccCCCHHHHHHHHHhhhhccC
Q psy9003 556 KAGLFGTPEQLKYLVDECHKAGL 578 (1276)
Q Consensus 556 ~~~~~~~~e~~~~l~~~~~~~~~ 578 (1276)
.|...|+.+.+++|++.+++++.
T Consensus 79 ~A~~~~~~~~v~~Ll~~ga~~~~ 101 (123)
T 3aaa_C 79 SAVYEGHVSCVKLLLSKGADKTV 101 (123)
T ss_dssp HHHHHTCHHHHHHHHHTTCCTTC
T ss_pred HHHHcCCHHHHHHHHHcCCCCCC
Confidence 77789999999999999998883
|
| >2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.51 E-value=3.5e-05 Score=71.86 Aligned_cols=95 Identities=19% Similarity=0.079 Sum_probs=66.7
Q ss_pred hhhhcccccCCCHHHHHHHHhhhhhcCCCCCcchhhhhhhhhhccccCCCHHHHHHHHHhhhhccCCCChhhhhhhhhhh
Q psy9003 513 VDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDEC 592 (1276)
Q Consensus 513 ~t~~~~a~~~g~~e~~~~lv~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 592 (1276)
.|..+.|+..|+++++++|++.+.+++..+. ...|..+.|...|+++.+++|++.+++++...... .|..
T Consensus 10 ~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~-----~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g-----~tpl 79 (115)
T 2l6b_A 10 NTPLHNAAKNGHAEEVKKLLSKGADVNARSK-----DGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDG-----NTPE 79 (115)
T ss_dssp CCHHHHHHHHTCHHHHHHHTTTTCCSSCCCS-----SSCCTTHHHHTTTCHHHHHHHTTTTCCTTCCCTTC-----CCTT
T ss_pred CCHHHHHHHcCCHHHHHHHHHcCCCCCCcCC-----CCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCCC-----CCHH
Confidence 4677778888888888888887777664443 34455566668888888888888887777332221 4455
Q ss_pred cccccCCCHHHHHHHHhhhhhccCC
Q psy9003 593 HKAGLFGTPEQLKYLVDECHKAGLF 617 (1276)
Q Consensus 593 ~~~~~~~~~e~~~~l~~~~~~~~~~ 617 (1276)
+-|..+|+.+.+++|++.++++|.+
T Consensus 80 ~~A~~~~~~~~~~~Ll~~ga~~n~~ 104 (115)
T 2l6b_A 80 HLAKKNGHHEIVKLLDAKGADVNAR 104 (115)
T ss_dssp HHHHTTTCHHHHHHHHTTSSSHHHH
T ss_pred HHHHHCCCHHHHHHHHHcCCCCCcC
Confidence 5566788888888888888877654
|
| >1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 | Back alignment and structure |
|---|
Probab=97.47 E-value=3.8e-05 Score=69.39 Aligned_cols=89 Identities=20% Similarity=0.102 Sum_probs=75.6
Q ss_pred hhhcccccCCChhhhhhhhhhhhhhccCCCHHHHHHHhhhhcccccCCCHHHHHHHHhhhhhcCCCCCcchhhhhhhhhh
Q psy9003 476 DECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECH 555 (1276)
Q Consensus 476 ~~~~~a~~~~~~e~~~~lv~~~~~~~~~~~~~~~~~~~t~~~~a~~~g~~e~~~~lv~~~~~~~~~~t~~~l~~~~~~~~ 555 (1276)
|..|.|..+|++|.+++|++...++|.... ...|+.+.|+..|+++++++|++.+++++..+. ..-|..+
T Consensus 4 t~L~~A~~~~~~~~v~~Ll~~g~~~n~~d~-----~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~-----~g~t~l~ 73 (93)
T 1n0q_A 4 TPLHLAARNGHLEVVKLLLEAGADVNAKDK-----NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDK-----NGRTPLH 73 (93)
T ss_dssp CHHHHHHHHTCHHHHHHHHHTTCCTTCCCT-----TSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT-----TSCCHHH
T ss_pred cHHHHHHHcCCHHHHHHHHHcCCCCcccCC-----CCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCC-----CCCCHHH
Confidence 667888999999999999999888887664 457899999999999999999999988885554 3456667
Q ss_pred ccccCCCHHHHHHHHHhhh
Q psy9003 556 KAGLFGTPEQLKYLVDECH 574 (1276)
Q Consensus 556 ~~~~~~~~e~~~~l~~~~~ 574 (1276)
.|...|+.|.+++|++.++
T Consensus 74 ~A~~~~~~~~~~~Ll~~ga 92 (93)
T 1n0q_A 74 LAARNGHLEVVKLLLEAGA 92 (93)
T ss_dssp HHHHTTCHHHHHHHHHTTC
T ss_pred HHHHcCCHHHHHHHHHcCC
Confidence 7779999999999998876
|
| >2yfo_A Alpha-galactosidase-sucrose kinase agask; hydrolase; HET: GLA GAL; 1.35A {Ruminococcus gnavus E1} PDB: 2yfn_A* | Back alignment and structure |
|---|
Probab=97.43 E-value=0.0003 Score=87.91 Aligned_cols=125 Identities=16% Similarity=0.170 Sum_probs=82.7
Q ss_pred HHHHHHHHHHHcCCEEEEEEeccccCCcccCCCcCCCCCCCcccccCCCCCCCCC-CCcCCCCCcHHHHHHHHHHHHHHH
Q psy9003 1038 QLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLW-DSRLFNYSEIEVLRFLLSNLRWYL 1116 (1276)
Q Consensus 1038 EfK~LV~alHk~GI~VILDvV~NHt~~~~~~~~~~f~g~~~~Yy~~~~~g~~~~W-~g~~LN~~np~Vr~~Iidsl~~Wv 1116 (1276)
.|+.|++.+|++||++.+-+.+..++.+... -...+.|+...+.+....| +...||+.+|++++++.+.+..++
T Consensus 393 Glk~lvd~ih~~Glk~GlW~~P~~v~~~S~l-----~~~hpdw~~~~~~~~~~~~~~~~~LD~t~Pea~~~~~~~l~~l~ 467 (720)
T 2yfo_A 393 SLAELITRVHEQGMKFGIWIEPEMINEDSDL-----YRAHPDWAIRIQGKKPVRSRNQLLLDFSRKEVRDCVFDQICVVL 467 (720)
T ss_dssp CHHHHHHHHHHTTCEEEEEECTTEECSSSHH-----HHHCGGGBCCCTTSCCCCBTTBEEBCTTSHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHCCCEEEEEecccccCCCCHH-----HHhCcceEEECCCcCcccCCceEEECCCCHHHHHHHHHHHHHHH
Confidence 4999999999999999999998876655321 1112345544333332222 234589999999999999999999
Q ss_pred HhCCCcEEccCCccccccccCCCCCCCCCCCccccCCCCCchHHHHHHHHHHHHHhhCCCeEEEEE
Q psy9003 1117 DEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAE 1182 (1276)
Q Consensus 1117 ~eygVDGFRfD~a~~L~~~d~g~g~~~~~~~~~~~~~~~d~~a~~Fl~el~~~Vr~~~PdvilIAE 1182 (1276)
+++|||+|.+|....+. ..++. ..-..-...+.++.+.+++.+|++++..=
T Consensus 468 ~~~GIDy~K~D~n~~~~-------~~~~~--------~~~~~y~~~~y~l~~~l~~~~p~v~~e~C 518 (720)
T 2yfo_A 468 DQGKIDYVKWDMNRSMA-------DVYAG--------NLSYDYVLGVYDFMERLCSRYPDLLLEGC 518 (720)
T ss_dssp TTSCCCEEEECCCSCCC-------SCCST--------THHHHHHHHHHHHHHHHHHHSTTCEEEEC
T ss_pred HHcCCCEEEECCCCCcc-------ccCCc--------cHHHHHHHHHHHHHHHHHHhCCCcEEEec
Confidence 99999999999743331 00110 00001112334567778889999877653
|
| >1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 | Back alignment and structure |
|---|
Probab=97.42 E-value=7.4e-05 Score=82.09 Aligned_cols=130 Identities=11% Similarity=-0.103 Sum_probs=93.7
Q ss_pred hhhhcccccCCChhhhhhhhhhhhhhccCCC-HHHHHHHhhhhcccccC---CCHHHHHHHHhhhhhcCCCCCcchhhhh
Q psy9003 475 VDECHKAGLFGTPEQLKYLVDECHKAGLFGT-PEQLKYLVDECHKAGLF---GTPEQLKYLVDECHKAGLFGTPEQLKYL 550 (1276)
Q Consensus 475 v~~~~~a~~~~~~e~~~~lv~~~~~~~~~~~-~~~~~~~~t~~~~a~~~---g~~e~~~~lv~~~~~~~~~~t~~~l~~~ 550 (1276)
.++.+.|...|+++.+++|+....+++.... ...-....|+.|.|+.. |+++++++|++.++++|.-+. +.
T Consensus 131 l~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~~d~-----~g 205 (278)
T 1dcq_A 131 LHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTG-----KG 205 (278)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCT-----TC
T ss_pred hhhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCccccCC-----CC
Confidence 3566677778888888888877777653310 00001246788888887 899999999999888886555 45
Q ss_pred hhhhhccccCCCHHHHHHHHHhhhhccCCCChhhhhhhhhhhcccccCCCHHHHHHHHhhhhhc
Q psy9003 551 VDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKA 614 (1276)
Q Consensus 551 ~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~ 614 (1276)
-|..|.|...|+.|.+++|++.++++|....+- -|..+-|...|+.|.+++|+..+++.
T Consensus 206 ~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g-----~tpL~~A~~~~~~~~v~~Ll~~ga~~ 264 (278)
T 1dcq_A 206 STALHYCCLTDNAECLKLLLRGKASIEIANESG-----ETPLDIAKRLKHEHCEELLTQALSGR 264 (278)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTS-----CCHHHHHHHTTCHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHcCCHHHHHHHHHcCCCCCCccCCC-----CCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence 566677778999999999999988888433222 45566666889999999999988853
|
| >1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 | Back alignment and structure |
|---|
Probab=97.40 E-value=0.00012 Score=80.54 Aligned_cols=126 Identities=12% Similarity=-0.059 Sum_probs=95.1
Q ss_pred hhhhcccccCCCHHHHHHHHhhhhhcC----CCCCcchhhhhhhhhhccccC---CCHHHHHHHHHhhhhccCCCChhhh
Q psy9003 513 VDECHKAGLFGTPEQLKYLVDECHKAG----LFGTPEQLKYLVDECHKAGLF---GTPEQLKYLVDECHKAGLFGTPEQL 585 (1276)
Q Consensus 513 ~t~~~~a~~~g~~e~~~~lv~~~~~~~----~~~t~~~l~~~~~~~~~~~~~---~~~e~~~~l~~~~~~~~~~~~~~~~ 585 (1276)
+++...|...|+++.+++|+..+.+++ ++..+ ...-|..|.|... |+++.+++|++.++++|.....-
T Consensus 131 l~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~---~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~~d~~g-- 205 (278)
T 1dcq_A 131 LHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGH---EPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKG-- 205 (278)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCS---STTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTC--
T ss_pred hhhhhhHhhhcccHHHHHHHHhhcchhhhccccccc---cCCCCcchHHHHhcccchHHHHHHHHHCCCCccccCCCC--
Confidence 466778888999999999999988876 22222 2344555556566 89999999999999988433322
Q ss_pred hhhhhhhcccccCCCHHHHHHHHhhhhhccCCCChhhhhhhHHHhhhccCCCCHHHHHHHHHHHHh
Q psy9003 586 KYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHK 651 (1276)
Q Consensus 586 ~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 651 (1276)
.|..|-|..+|++|.+++|++.++++|.+-..- -++++-|...|+.|.+++|+..-+.
T Consensus 206 ---~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g-----~tpL~~A~~~~~~~~v~~Ll~~ga~ 263 (278)
T 1dcq_A 206 ---STALHYCCLTDNAECLKLLLRGKASIEIANESG-----ETPLDIAKRLKHEHCEELLTQALSG 263 (278)
T ss_dssp ---CCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTS-----CCHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred ---CCHHHHHHHcCCHHHHHHHHHcCCCCCCccCCC-----CCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 566666668999999999999999988765443 5677777777899999998886554
|
| >2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.35 E-value=5.4e-05 Score=70.61 Aligned_cols=93 Identities=19% Similarity=0.076 Sum_probs=78.9
Q ss_pred hhhhcccccCCChhhhhhhhhhhhhhccCCCHHHHHHHhhhhcccccCCCHHHHHHHHhhhhhcCCCCCcchhhhhhhhh
Q psy9003 475 VDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDEC 554 (1276)
Q Consensus 475 v~~~~~a~~~~~~e~~~~lv~~~~~~~~~~~~~~~~~~~t~~~~a~~~g~~e~~~~lv~~~~~~~~~~t~~~l~~~~~~~ 554 (1276)
.|..|.|..+|++|.+++|++...+++.... ...|+.+.|+..|+++++++|+..+++++..+. +.-|..
T Consensus 10 ~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~-----~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~-----~g~tpl 79 (115)
T 2l6b_A 10 NTPLHNAAKNGHAEEVKKLLSKGADVNARSK-----DGNTPLHLAAKNGHAEIVKLLLAKGADVNARSK-----DGNTPE 79 (115)
T ss_dssp CCHHHHHHHHTCHHHHHHHTTTTCCSSCCCS-----SSCCTTHHHHTTTCHHHHHHHTTTTCCTTCCCT-----TCCCTT
T ss_pred CCHHHHHHHcCCHHHHHHHHHcCCCCCCcCC-----CCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCC-----CCCCHH
Confidence 4678889999999999999999888876554 457899999999999999999999888875554 345556
Q ss_pred hccccCCCHHHHHHHHHhhhhcc
Q psy9003 555 HKAGLFGTPEQLKYLVDECHKAG 577 (1276)
Q Consensus 555 ~~~~~~~~~e~~~~l~~~~~~~~ 577 (1276)
+.|...|+.+.+++|++.++++|
T Consensus 80 ~~A~~~~~~~~~~~Ll~~ga~~n 102 (115)
T 2l6b_A 80 HLAKKNGHHEIVKLLDAKGADVN 102 (115)
T ss_dssp HHHHTTTCHHHHHHHHTTSSSHH
T ss_pred HHHHHCCCHHHHHHHHHcCCCCC
Confidence 67779999999999999999998
|
| >3nme_A Ptpkis1 protein, SEX4 glucan phosphatase; dual specificity phosphatase, carbohydrate BIND hydrolase; 2.40A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.34 E-value=0.00018 Score=80.73 Aligned_cols=70 Identities=14% Similarity=0.143 Sum_probs=56.2
Q ss_pred CceEEEEEccCCcEEEEEccCCCCccccccceecC-CCeEEEEcCCCCCCCcccCcccEEEEEEEEeCCeeeeecCCcce
Q psy9003 780 DECHKAGLLCFMHVVCAAGDFNNWNREEFAYKKLD-FGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHGHLLDRLSPWAT 858 (1276)
Q Consensus 780 D~a~FalwAP~A~~VsLvGDFN~wd~~~~pM~r~~-~GVWsl~Ip~~~~G~~~i~hGs~YkYrV~~~dG~~~~~~DPYAk 858 (1276)
..+.|+..+|.|++|+|.|+||+|+ ..+||.+.. .|+|+++++ .+.|. +.|+|.| ||.| +.||-+.
T Consensus 170 ~~v~f~~~~~~~~~V~v~GsF~~W~-~~~~l~k~~~~g~~~~~~~-L~~G~------y~YkFiV---DG~w--~~d~~~~ 236 (294)
T 3nme_A 170 KTVTLTLKDKGFSRVEISGLDIGWG-QRIPLTLGKGTGFWILKRE-LPEGQ------FEYKYII---DGEW--THNEAEP 236 (294)
T ss_dssp EEEEEEEECSSCSCEEEEETTTEEE-EEEECEECTTTCEEEEEEE-ECSEE------EEEEEEE---TTEE--ECCTTSC
T ss_pred ccceeeeccCCCCEEEEEEeccCCC-CcccceEcCCCCEEEEEEE-CCCce------EEEEEEE---CCEE--eeCCCCC
Confidence 3578999999999999999999997 568999865 899999996 44553 6677776 7986 6799886
Q ss_pred Eeec
Q psy9003 859 YVTE 862 (1276)
Q Consensus 859 av~~ 862 (1276)
....
T Consensus 237 ~~~~ 240 (294)
T 3nme_A 237 FIGP 240 (294)
T ss_dssp EECS
T ss_pred eeeE
Confidence 6533
|
| >3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A | Back alignment and structure |
|---|
Probab=97.32 E-value=0.00012 Score=84.43 Aligned_cols=124 Identities=8% Similarity=-0.048 Sum_probs=98.9
Q ss_pred hhhcccccC-CChhhhhhhhhhhhhhccCCCHHHHHHHhhhhcccccCCCHHHHHHHHhhhhhcCCCCCcchhhhhhhhh
Q psy9003 476 DECHKAGLF-GTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDEC 554 (1276)
Q Consensus 476 ~~~~~a~~~-~~~e~~~~lv~~~~~~~~~~~~~~~~~~~t~~~~a~~~g~~e~~~~lv~~~~~~~~~~t~~~l~~~~~~~ 554 (1276)
+..|.|..+ ++++.+++|++.+.++|..... ....|.++.|+..|+++++++|+..++++|..+. +.-|..
T Consensus 201 t~L~~Aa~~~g~~~~v~~LL~~Gadvn~~~~~---~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~~d~-----~G~TpL 272 (368)
T 3jue_A 201 ALLFRASGHPPSLPTMADALAHGADVNWVNGG---QDNATPLIQATAANSLLACEFLLQNGANVNQADS-----AGRGPL 272 (368)
T ss_dssp HHHHHHTSSSCCHHHHHHHHHTTCCTTCCCTT---TTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT-----TSCCHH
T ss_pred cHHHHHHHccCCHHHHHHHHHcCCCCCccccc---cCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCC-----CCCCHH
Confidence 567888888 9999999999998888865410 1346889999999999999999999988886554 455666
Q ss_pred hccccCCCHHHHHHHHHhhhhccCCCChhhhhhhhhhhcccccCCCHHHHHHHHhhhh
Q psy9003 555 HKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECH 612 (1276)
Q Consensus 555 ~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~ 612 (1276)
|.|...|+.+.+++|++.++++|.....- .|..+-|...|+.+.+++|...+.
T Consensus 273 h~A~~~g~~~~v~~LL~~Gad~~~~d~~G-----~TpL~~A~~~g~~~iv~lLl~~~~ 325 (368)
T 3jue_A 273 HHATILGHTGLACLFLKRGADLGARDSEG-----RDPLTIAMETANADIVTLLRLAKM 325 (368)
T ss_dssp HHHHHHTCHHHHHHHHHTTCCTTCCCTTS-----CCHHHHHHHTTCHHHHHHHHHHHC
T ss_pred HHHHHcCcHHHHHHHHHCcCCCCCcCCCC-----CCHHHHHHHCCCHHHHHHHHHcCC
Confidence 77779999999999999999988433222 455666668999999999998764
|
| >2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A | Back alignment and structure |
|---|
Probab=97.22 E-value=0.00017 Score=67.57 Aligned_cols=43 Identities=14% Similarity=-0.014 Sum_probs=33.0
Q ss_pred CCChhHHHHHhhhcccccCCCChhhhhcccccchhccccCCHhHHHhh
Q psy9003 389 FGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYL 436 (1276)
Q Consensus 389 ~~~id~vkyLi~~~h~~~~~~~~~~~~~~vt~lh~a~~~~~~~~~~yl 436 (1276)
.|+++++++|+.. ..++...+..+. |+||.|+..|+.+++++|
T Consensus 67 ~~~~~~v~~Ll~~-ga~~~~~d~~g~----tpl~~A~~~~~~~~~~~L 109 (110)
T 2zgd_A 67 NGHLEVVKLLLEA-GADVXAQDKFGK----TAFDISIDNGNEDLAEIL 109 (110)
T ss_dssp TTCHHHHHHHHHT-TCCTTCCCTTSC----CHHHHHHHHTCHHHHHHH
T ss_pred cCCHHHHHHHHHc-CCCccccccCCC----cHHHHHHHcCCHHHHHHh
Confidence 4677777777754 344555566777 999999999999999886
|
| >4aie_A Glucan 1,6-alpha-glucosidase; hydrolase, glycoside hydrolase 13; HET: MES GOL; 2.05A {Lactobacillus acidophilus ncfm} | Back alignment and structure |
|---|
Probab=97.07 E-value=0.00026 Score=84.09 Aligned_cols=45 Identities=16% Similarity=0.248 Sum_probs=39.9
Q ss_pred ccccccCC--------ChHHHHHHHHHHHHhcCc-----------------------------CCCHHHHHHHHHHHHHc
Q psy9003 135 ECHKAGLF--------GTPEQLKYLVDECHKAGL-----------------------------FGTPEQLKYLVDECHKA 177 (1276)
Q Consensus 135 e~h~gs~~--------~y~e~a~~li~y~~~~~y-----------------------------ygtp~~l~~~vd~~h~~ 177 (1276)
|||.+||. +++-|+++| ||+|++|. |||++||+.||++||+.
T Consensus 14 ei~~~~F~d~~~dg~Gdl~Gi~~kL-dYLk~LGvt~I~L~Pi~~~~~~~~GYd~~dy~~vdp~~Gt~~dfk~Lv~~aH~~ 92 (549)
T 4aie_A 14 QVYPKSFQDSNGDGIGDLQGIISRL-DYLEKLGIDAIWLSPVYQSPGVDNGYDISDYEAIDPQYGTMADMDELISKAKEH 92 (549)
T ss_dssp EECGGGTCCSSSSSSCCHHHHHTTH-HHHHHHTCSEEEECCCEECCCTTTTSSCSEEEEECTTTCCHHHHHHHHHHHHHT
T ss_pred EEEcchhcCCCCCCCcCHHHHHHhh-HHHHHCCCCEEEeCCCcCCCCCCCCcCccCCCCcCcccCCHHHHHHHHHHHHHC
Confidence 66666654 689999986 99999998 99999999999999999
Q ss_pred CCC
Q psy9003 178 GLF 180 (1276)
Q Consensus 178 ~i~ 180 (1276)
||+
T Consensus 93 Gi~ 95 (549)
T 4aie_A 93 HIK 95 (549)
T ss_dssp TCE
T ss_pred CCE
Confidence 998
|
| >1lwj_A 4-alpha-glucanotransferase; alpha-amylase family, acarbose, (beta/alpha)8 barrel; HET: ACG; 2.50A {Thermotoga maritima} SCOP: b.71.1.1 c.1.8.1 PDB: 1lwh_A* | Back alignment and structure |
|---|
Probab=96.94 E-value=0.00034 Score=81.84 Aligned_cols=45 Identities=11% Similarity=0.248 Sum_probs=39.9
Q ss_pred ccccccCC--------ChHHHHHHHHHHHHhcCc----------------------------CCCHHHHHHHHHHHHHcC
Q psy9003 135 ECHKAGLF--------GTPEQLKYLVDECHKAGL----------------------------FGTPEQLKYLVDECHKAG 178 (1276)
Q Consensus 135 e~h~gs~~--------~y~e~a~~li~y~~~~~y----------------------------ygtp~~l~~~vd~~h~~~ 178 (1276)
|||.+||. +++.|+++| ||+|++|+ |||++||+.||++||+.|
T Consensus 5 ei~~~~F~~~~~~g~Gd~~gi~~~L-dyL~~LGv~~I~L~Pi~~~~~~~GY~~~dy~~idp~~Gt~~df~~lv~~aH~~G 83 (441)
T 1lwj_A 5 QIYVRSFRDGNLDGVGDFRGLKNAV-SYLKELGIDFVWLMPVFSSISFHGYDVVDFYSFKAEYGSEREFKEMIEAFHDSG 83 (441)
T ss_dssp EECHHHHCCSSSSSSCCHHHHHHTH-HHHHHTTCCEEEECCCEECSSSSCCSCSEEEEECTTTCCHHHHHHHHHHHHHTT
T ss_pred EEehHHhcCCCCCCccCHHHHHHhh-HHHHHcCCCEEEeCCCcCCCCCCCCCcccccccCcccCCHHHHHHHHHHHHHCC
Confidence 56666664 699999887 99999998 999999999999999999
Q ss_pred CC
Q psy9003 179 LF 180 (1276)
Q Consensus 179 i~ 180 (1276)
|+
T Consensus 84 i~ 85 (441)
T 1lwj_A 84 IK 85 (441)
T ss_dssp CE
T ss_pred CE
Confidence 98
|
| >1zja_A Trehalulose synthase; sucrose isomerase, alpha-amylase family, (beta/alpha)8 barrel; 1.60A {Pseudomonas mesoacidophila} PDB: 1zjb_A 2pwd_A* 2pwh_A 2pwg_A 2pwe_A* 2pwf_A* 3gbe_A* 3gbd_A* | Back alignment and structure |
|---|
Probab=96.89 E-value=0.00053 Score=82.85 Aligned_cols=45 Identities=22% Similarity=0.269 Sum_probs=40.8
Q ss_pred ccccccCC--------ChHHHHHHHHHHHHhcCc-----------------------------CCCHHHHHHHHHHHHHc
Q psy9003 135 ECHKAGLF--------GTPEQLKYLVDECHKAGL-----------------------------FGTPEQLKYLVDECHKA 177 (1276)
Q Consensus 135 e~h~gs~~--------~y~e~a~~li~y~~~~~y-----------------------------ygtp~~l~~~vd~~h~~ 177 (1276)
|||.+||. +++.|+++| ||+|++|+ |||++||+.||++||+.
T Consensus 14 qi~~~~F~~~~~dg~Gdl~gi~~~L-dyl~~LGv~~I~L~Pi~~~~~~~~GYd~~dy~~idp~~Gt~~df~~Lv~~aH~~ 92 (557)
T 1zja_A 14 QVYPRSFKDTNGDGIGDFKGLTEKL-DYLKGLGIDAIWINPHYASPNTDNGYDISDYREVMKEYGTMEDFDRLMAELKKR 92 (557)
T ss_dssp EECGGGTCCSSSSSSCCHHHHHHTH-HHHHHHTCCEEEECCCEECCCTTTTSSCSEEEEECTTTCCHHHHHHHHHHHHHT
T ss_pred EEEchHhcCCCCCCccCHHHHHHHH-HHHHHcCCCEEEECCCccCCCCCCCCCcccccccCcccCCHHHHHHHHHHHHHC
Confidence 66666664 699999998 99999998 99999999999999999
Q ss_pred CCC
Q psy9003 178 GLF 180 (1276)
Q Consensus 178 ~i~ 180 (1276)
||+
T Consensus 93 Gi~ 95 (557)
T 1zja_A 93 GMR 95 (557)
T ss_dssp TCE
T ss_pred CCE
Confidence 999
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=96.88 E-value=0.021 Score=68.18 Aligned_cols=201 Identities=11% Similarity=0.057 Sum_probs=135.6
Q ss_pred HHHHhhhhhcCCCCCcc-hhhhhhhhhhccccCCCHHHHHHHHHhhhhccCCCChhhhhhhhhhhcc------cccCCCH
Q psy9003 529 KYLVDECHKAGLFGTPE-QLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHK------AGLFGTP 601 (1276)
Q Consensus 529 ~~lv~~~~~~~~~~t~~-~l~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~ 601 (1276)
.-|...+.+..+..+++ .+...|+.|. ..|.++.+..|.+.|.+.|+..+.--.-..+..+.+ +...|.+
T Consensus 10 e~L~~~~~~k~~~~spe~~l~~~id~c~---k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l 86 (501)
T 4g26_A 10 ENLSRKAKKKAIQQSPEALLKQKLDMCS---KKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGL 86 (501)
T ss_dssp --------------CHHHHHHHHHHHTT---TSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHH
T ss_pred HHHHHHHHHhcccCCCHHHHHHHHHHHH---hCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchH
Confidence 34455556666666665 4666676664 568899999999999999976655433333333333 3345678
Q ss_pred HHHHHHHhhhhhccCCCChhhhhhhHHHhhhccCCCCHHHHHHHHHHHHhhcCCCChHHHhhhhhhhhhcccCCChhHHH
Q psy9003 602 EQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLK 681 (1276)
Q Consensus 602 e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 681 (1276)
+.+.-+.+.|.+.|.+-|..--.-+|.++.++ |.++.+..+++.|.+.|--.+...-.-++.++.+ .|.++.+.
T Consensus 87 ~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~---g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~---~g~~~~A~ 160 (501)
T 4g26_A 87 SRGFDIFKQMIVDKVVPNEATFTNGARLAVAK---DDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCR---KGDADKAY 160 (501)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHH---TCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH---TTCHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHcCCCCccceehHHHHHHHH---CCCHHHHH
Confidence 88888999999998887766445678887775 7899999999999998754444444446666654 46789999
Q ss_pred HHHHHHHhhccCCChhHHHhhHHHHhhcccCCCHHHHHHHHHHHHhccCCCCchhhhhhh
Q psy9003 682 YLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLV 741 (1276)
Q Consensus 682 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 741 (1276)
-+.+.|.+.|---+......+|.++.++ |.++.+.-++++|.+.|......-..-+.
T Consensus 161 ~l~~~M~~~G~~Pd~~ty~~Li~~~~~~---g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~ 217 (501)
T 4g26_A 161 EVDAHMVESEVVPEEPELAALLKVSMDT---KNADKVYKTLQRLRDLVRQVSKSTFDMIE 217 (501)
T ss_dssp HHHHHHHHTTCCCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHTSSBCHHHHHHHH
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHhhC---CCHHHHHHHHHHHHHhCCCcCHHHHHHHH
Confidence 9999999888666666677778887765 45788888888888888776655544443
|
| >1m53_A Isomaltulose synthase; klebsiella SP. LX3, sucrose isomerization, isomerase; 2.20A {Klebsiella SP} SCOP: b.71.1.1 c.1.8.1 | Back alignment and structure |
|---|
Probab=96.80 E-value=0.00068 Score=82.21 Aligned_cols=45 Identities=22% Similarity=0.279 Sum_probs=39.6
Q ss_pred ccccccCC--------ChHHHHHHHHHHHHhcCc-----------------------------CCCHHHHHHHHHHHHHc
Q psy9003 135 ECHKAGLF--------GTPEQLKYLVDECHKAGL-----------------------------FGTPEQLKYLVDECHKA 177 (1276)
Q Consensus 135 e~h~gs~~--------~y~e~a~~li~y~~~~~y-----------------------------ygtp~~l~~~vd~~h~~ 177 (1276)
|||.+||. +++.|++.| ||+|++|+ |||++||+.||++||+.
T Consensus 27 qi~~~~F~d~~~dg~Gdl~gi~~~L-dyL~~LGv~~I~l~Pi~~~~~~~~GYd~~dy~~idp~~Gt~~df~~lv~~aH~~ 105 (570)
T 1m53_A 27 QIYPRSFKDTNDDGIGDIRGIIEKL-DYLKSLGIDAIWINPHYDSPNTDNGYDISNYRQIMKEYGTMEDFDSLVAEMKKR 105 (570)
T ss_dssp EECGGGTCCSSSSSSCCHHHHHHTH-HHHHHHTCCEEEECCCEECCCTTTTSSCSEEEEECGGGCCHHHHHHHHHHHHHT
T ss_pred EEechhhccCCCCCccCHHHHHHHH-HHHHHcCCCEEEECCcccCCCCCCCCCcccccccCcccCCHHHHHHHHHHHHHC
Confidence 55555543 689999998 99999998 99999999999999999
Q ss_pred CCC
Q psy9003 178 GLF 180 (1276)
Q Consensus 178 ~i~ 180 (1276)
||+
T Consensus 106 Gi~ 108 (570)
T 1m53_A 106 NMR 108 (570)
T ss_dssp TCE
T ss_pred CCE
Confidence 998
|
| >2qlv_B Protein SIP2, protein SPM2; heterotrimer, ATP-binding, carbohydrate metabolism, kinase, membrane, nucleotide-binding, nucleus; 2.60A {Saccharomyces cerevisiae} SCOP: b.1.18.21 d.353.1.1 | Back alignment and structure |
|---|
Probab=96.76 E-value=0.0013 Score=72.49 Aligned_cols=62 Identities=18% Similarity=0.294 Sum_probs=47.9
Q ss_pred EEccCCcEEEEEccCCCCcccccccee--cCCCeEEEEcCCCCCCCcccCcccEEEEEEEEeCCeeeeecCCcceEe
Q psy9003 786 GLLCFMHVVCAAGDFNNWNREEFAYKK--LDFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHGHLLDRLSPWATYV 860 (1276)
Q Consensus 786 lwAP~A~~VsLvGDFN~wd~~~~pM~r--~~~GVWsl~Ip~~~~G~~~i~hGs~YkYrV~~~dG~~~~~~DPYAkav 860 (1276)
.|...|++|+|.|+|++|+.. ++|.+ ...|+|+++++ +..|. ..|+|.| ||.| +.||-...+
T Consensus 9 ~W~~~a~~V~V~GsF~~W~~~-~~m~k~~~~~G~f~~tv~-LppG~------y~YKFiV---DG~w--~~Dp~~p~~ 72 (252)
T 2qlv_B 9 RWQQGGSKVYVTGSFTKWRKM-IGLIPDSDNNGSFHVKLR-LLPGT------HRFRFIV---DNEL--RVSDFLPTA 72 (252)
T ss_dssp EECSCCSCEEEEEGGGTTSSC-EECEECSSSTTCEEEEEE-ECSEE------EEEEEEE---TTEE--ECCTTSCEE
T ss_pred EEeCCCcEEEEEEEeCCCcCc-ccceeccCCCCcEEEEEE-CCCCE------EEEEEEE---CCEE--EeCCCCCEE
Confidence 588999999999999999743 89988 45799999984 44553 5677766 7987 568877544
|
| >2xn2_A Alpha-galactosidase; hydrolase, glycosidase; HET: SME GLA IMD; 1.58A {Lactobacillus acidophilus ncfm} PDB: 2xn1_A* 2xn0_A* | Back alignment and structure |
|---|
Probab=96.72 E-value=0.004 Score=78.05 Aligned_cols=89 Identities=18% Similarity=0.162 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHcCCEEEEEEeccccCCcccCCCcCCCCCCCcccccCCCCCCCCCC--CcCCCCCcHHHHHHHHHHHHHH
Q psy9003 1038 QLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWD--SRLFNYSEIEVLRFLLSNLRWY 1115 (1276)
Q Consensus 1038 EfK~LV~alHk~GI~VILDvV~NHt~~~~~~~~~~f~g~~~~Yy~~~~~g~~~~W~--g~~LN~~np~Vr~~Iidsl~~W 1115 (1276)
.++.|++.+|++||++.+-+.+.....+... | ...+.|+...+. ....|+ ...||+.||++++++.+.+..+
T Consensus 397 Glk~lv~~ih~~Glk~GlW~~P~~v~~~S~l----~-~~hpdw~~~~~g-~~~~~~~~~~~LD~t~Pev~~~i~~~l~~~ 470 (732)
T 2xn2_A 397 GLGHFADYVHEQGLKFGLWFEPEMISYESNL----Y-KEHPDYLXHVPG-RKPCPSRNQYVLELGRKEVRDNIFEQMVKI 470 (732)
T ss_dssp CHHHHHHHHHHTTCEEEEEECTTEECSSSHH----H-HHCGGGBCCCTT-SCCCCBTTBEEBCTTSHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHcCCEEEEEeCccccCCCCHH----H-HhCchheecCCC-CCCccCCceEEEcCCCHHHHHHHHHHHHHH
Confidence 5999999999999999999988755443211 0 112334433222 222333 2458999999999999999999
Q ss_pred HHhCCCcEEccCCcccc
Q psy9003 1116 LDEYQFDGFRFDGVTSM 1132 (1276)
Q Consensus 1116 v~eygVDGFRfD~a~~L 1132 (1276)
+.++|||+|.+|....+
T Consensus 471 ~~~~GVD~~K~D~~~~~ 487 (732)
T 2xn2_A 471 LDSKKIDYIKWDMNRSL 487 (732)
T ss_dssp HTTSCCCEEEECCCCCC
T ss_pred HHHcCCCEEEECCCccc
Confidence 99999999999987544
|
| >2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A | Back alignment and structure |
|---|
Probab=96.72 E-value=0.00071 Score=63.25 Aligned_cols=85 Identities=13% Similarity=0.027 Sum_probs=52.9
Q ss_pred hhhhcccccCCCHHHHHHHHhhhhhcCCCCCcchhhhhhhhhhccccCCCHHHHHHHHHhhhhccCCCChhhhhhhhhhh
Q psy9003 513 VDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDEC 592 (1276)
Q Consensus 513 ~t~~~~a~~~g~~e~~~~lv~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 592 (1276)
.|..+.|+..|+++++++|++.+.++|..+. ..-|-.+.|+..|+++.+++|++.++++|...... .|..
T Consensus 25 ~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~d~-----~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g-----~tpl 94 (110)
T 2zgd_A 25 GKKLLEAARAGQDDEVRILMANGADVAAKDK-----NGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFG-----KTAF 94 (110)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHTTCCTTCCCT-----TCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTS-----CCHH
T ss_pred chHHHHHHHcCCHHHHHHHHHcCCCCCccCC-----CCCCHHHHHHHcCCHHHHHHHHHcCCCccccccCC-----CcHH
Confidence 5666777777777777777777666664333 33444555567777777777777777666322221 3444
Q ss_pred cccccCCCHHHHHHH
Q psy9003 593 HKAGLFGTPEQLKYL 607 (1276)
Q Consensus 593 ~~~~~~~~~e~~~~l 607 (1276)
+-|...|+.|.+++|
T Consensus 95 ~~A~~~~~~~~~~~L 109 (110)
T 2zgd_A 95 DISIDNGNEDLAEIL 109 (110)
T ss_dssp HHHHHHTCHHHHHHH
T ss_pred HHHHHcCCHHHHHHh
Confidence 444466777777665
|
| >3bh4_A Alpha-amylase; calcium, carbohydrate metabolism, glycosidase, hydrolase, metal-binding, secreted; 1.40A {Bacillus amyloliquefaciens} PDB: 1e43_A 1e3z_A* 1e40_A* 1e3x_A 1vjs_A 1ob0_A 1bli_A 1bpl_B 1bpl_A | Back alignment and structure |
|---|
Probab=96.64 E-value=0.001 Score=78.69 Aligned_cols=24 Identities=4% Similarity=-0.018 Sum_probs=21.1
Q ss_pred cccccCC------ChHHHHHHHHHHHHhcCc
Q psy9003 136 CHKAGLF------GTPEQLKYLVDECHKAGL 160 (1276)
Q Consensus 136 ~h~gs~~------~y~e~a~~li~y~~~~~y 160 (1276)
+|+.+|+ +|+.|+++| ||+|++|+
T Consensus 6 ~q~f~w~~~~~gG~~~gi~~~L-dyL~~LGv 35 (483)
T 3bh4_A 6 MQYFEWYTPNDGQHWKRLQNDA-EHLSDIGI 35 (483)
T ss_dssp EECCCTTCCSSSCHHHHHHHHH-HHHHHHTC
T ss_pred EEEEEeccCCCCCCHHHHHHHH-HHHHhcCC
Confidence 5777787 799999998 99999999
|
| >3dhu_A Alpha-amylase; structural genomics, hydrolase, glycosidase, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=96.57 E-value=0.00087 Score=78.52 Aligned_cols=45 Identities=20% Similarity=0.236 Sum_probs=38.2
Q ss_pred ccccccC---CChHHHHHHHHHHHHhcCc-----------------------------------CCCHHHHHHHHHHHHH
Q psy9003 135 ECHKAGL---FGTPEQLKYLVDECHKAGL-----------------------------------FGTPEQLKYLVDECHK 176 (1276)
Q Consensus 135 e~h~gs~---~~y~e~a~~li~y~~~~~y-----------------------------------ygtp~~l~~~vd~~h~ 176 (1276)
|+|.+|| =+|+.|++.| ||+|++|+ |||++||+.||++||+
T Consensus 17 ei~~~~f~~~G~~~~i~~~l-~yl~~lG~~~i~l~Pi~~~~~~~~~~~~~~gY~~~dy~~i~~~~Gt~~~~~~lv~~~h~ 95 (449)
T 3dhu_A 17 SVFVRNYSEAGNFAGVTADL-QRIKDLGTDILWLLPINPIGEVNRKGTLGSPYAIKDYRGINPEYGTLADFKALTDRAHE 95 (449)
T ss_dssp EECHHHHSSSCSHHHHHTTH-HHHHHHTCSEEEECCCSCBCSTTCCTTTCCTTSBSCTTSCCGGGCCHHHHHHHHHHHHH
T ss_pred EEEhhhhCCCCCHHHHHHhH-HHHHHcCCCEEEECCcccccccCCCCCCCCCcCcccccccCcccCCHHHHHHHHHHHHH
Confidence 8888887 4799999998 99999987 6788888888888888
Q ss_pred cCCC
Q psy9003 177 AGLF 180 (1276)
Q Consensus 177 ~~i~ 180 (1276)
.||+
T Consensus 96 ~Gi~ 99 (449)
T 3dhu_A 96 LGMK 99 (449)
T ss_dssp TTCE
T ss_pred CCCE
Confidence 8877
|
| >2zic_A Dextran glucosidase; TIM barrel, (beta/alpha)8-barrel, hydrolase; 2.20A {Streptococcus mutans} PDB: 2zid_A* | Back alignment and structure |
|---|
Probab=96.55 E-value=0.0012 Score=79.66 Aligned_cols=37 Identities=22% Similarity=0.321 Sum_probs=35.3
Q ss_pred ChHHHHHHHHHHHHhcCc-----------------------------CCCHHHHHHHHHHHHHcCCC
Q psy9003 143 GTPEQLKYLVDECHKAGL-----------------------------FGTPEQLKYLVDECHKAGLF 180 (1276)
Q Consensus 143 ~y~e~a~~li~y~~~~~y-----------------------------ygtp~~l~~~vd~~h~~~i~ 180 (1276)
+++.|+++| ||+|++|+ |||++||+.||++||+.||+
T Consensus 29 dl~gi~~~L-dyl~~LGv~~I~l~Pi~~~~~~~~GY~~~dy~~idp~~Gt~~df~~lv~~~h~~Gi~ 94 (543)
T 2zic_A 29 DLKGITSKL-DYLQKLGVMAIWLSPVYDSPMDDNGYDIANYEAIADIFGNMADMDNLLTQAKMRGIK 94 (543)
T ss_dssp CHHHHHHTH-HHHHHHTCSEEEECCCEECCCTTTTSSCSEEEEECGGGCCHHHHHHHHHHHHTTTCE
T ss_pred CHHHHHHHH-HHHHHcCCCEEEECCcccCCCCCCCCCcccccccCcccCCHHHHHHHHHHHHHCCCE
Confidence 789999987 99999998 99999999999999999998
|
| >3aj7_A Oligo-1,6-glucosidase; (beta/alpha)8-barrel, hydrolase; 1.30A {Saccharomyces cerevisiae} PDB: 3a4a_A* 3a47_A 3axi_A* 3axh_A* | Back alignment and structure |
|---|
Probab=96.54 E-value=0.0013 Score=80.08 Aligned_cols=45 Identities=22% Similarity=0.273 Sum_probs=41.1
Q ss_pred ccccccCC--------ChHHHHHHHHHHHHhcCc-----------------------------CCCHHHHHHHHHHHHHc
Q psy9003 135 ECHKAGLF--------GTPEQLKYLVDECHKAGL-----------------------------FGTPEQLKYLVDECHKA 177 (1276)
Q Consensus 135 e~h~gs~~--------~y~e~a~~li~y~~~~~y-----------------------------ygtp~~l~~~vd~~h~~ 177 (1276)
|||..||. +++.|++.| ||+|++|+ |||++||+.||++||+.
T Consensus 22 qi~~~~F~d~~~dg~Gdl~gi~~~L-dyl~~LGv~~i~l~Pi~~~~~~~~GY~~~dy~~id~~~Gt~~df~~lv~~~h~~ 100 (589)
T 3aj7_A 22 QIYPASFKDSNDDGWGDMKGIASKL-EYIKELGADAIWISPFYDSPQDDMGYDIANYEKVWPTYGTNEDCFALIEKTHKL 100 (589)
T ss_dssp EECGGGSCCSSSSSSCCHHHHHHTH-HHHHHHTCSEEEECCCEECCCTTTTSSCSEEEEECTTTCCHHHHHHHHHHHHHT
T ss_pred EEEhHHhcCCCCCCccCHHHHHHHH-HHHHHcCCCEEEECCcccCCCCCCCcCcccccccccccCCHHHHHHHHHHHHHC
Confidence 77777764 799999987 99999998 99999999999999999
Q ss_pred CCC
Q psy9003 178 GLF 180 (1276)
Q Consensus 178 ~i~ 180 (1276)
||+
T Consensus 101 Gi~ 103 (589)
T 3aj7_A 101 GMK 103 (589)
T ss_dssp TCE
T ss_pred CCE
Confidence 999
|
| >3ttq_A Dextransucrase; (beta/alpha)8 barrel, transferase; HET: PG4; 1.90A {Leuconostoc mesenteroides} PDB: 3tto_A* | Back alignment and structure |
|---|
Probab=96.41 E-value=0.0019 Score=82.59 Aligned_cols=67 Identities=22% Similarity=0.267 Sum_probs=56.8
Q ss_pred CcCCCCCcHHHHHHHHHHHHHHH---------HhCCCcEEccCCccccccccCCCCCCCCCCCccccCCCCCchHHHHHH
Q psy9003 1094 SRLFNYSEIEVLRFLLSNLRWYL---------DEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLM 1164 (1276)
Q Consensus 1094 g~~LN~~np~Vr~~Iidsl~~Wv---------~eygVDGFRfD~a~~L~~~d~g~g~~~~~~~~~~~~~~~d~~a~~Fl~ 1164 (1276)
.+++|.+||+|++.++.++.|.+ .+.++||||+|++.++. ..||+
T Consensus 411 ~nDvDnsnP~Vqae~lnw~~~l~n~g~i~~~~~~~nfdG~RvDAvdnvd--------------------------ad~l~ 464 (1108)
T 3ttq_A 411 ANDVDNSNPVVQAENLNWLHYLMNFGTITAGQDDANFDSIRIDAVDFIH--------------------------NDTIQ 464 (1108)
T ss_dssp SEEECTTSHHHHHHHHHHHHHHHTHHHHHHSCTTSSCCEEEETTGGGSC--------------------------HHHHH
T ss_pred ecccccCChHHHHHHHHHHHHHhhcccccccCCCCCCceEEEechhccC--------------------------HHHHH
Confidence 48899999999999999999999 89999999999999882 24777
Q ss_pred HHHHHHHhhCC---------CeEEEEEccCC
Q psy9003 1165 VANKFLHDKYP---------EIITIAEDVSG 1186 (1276)
Q Consensus 1165 el~~~Vr~~~P---------dvilIAE~~s~ 1186 (1276)
.+.+.+++.+- +-+.|+|.|++
T Consensus 465 ~~~~~~~~~yg~~~~~~~a~~h~si~E~W~~ 495 (1108)
T 3ttq_A 465 RTYDYLRDAYQVQQSEAKANQHISLVEAGLD 495 (1108)
T ss_dssp HHHHHHHHHHCTTSBHHHHTTSCCEESCSTT
T ss_pred HHHHHHHHHhCCCccchhhhcceEEEeeccC
Confidence 77777776554 68899999975
|
| >1uok_A Oligo-1,6-glucosidase; sugar degradation, hydrolase, TIM-barrel glycosidase; 2.00A {Bacillus cereus} SCOP: b.71.1.1 c.1.8.1 | Back alignment and structure |
|---|
Probab=96.39 E-value=0.0016 Score=78.66 Aligned_cols=37 Identities=27% Similarity=0.372 Sum_probs=35.2
Q ss_pred ChHHHHHHHHHHHHhcCc-----------------------------CCCHHHHHHHHHHHHHcCCC
Q psy9003 143 GTPEQLKYLVDECHKAGL-----------------------------FGTPEQLKYLVDECHKAGLF 180 (1276)
Q Consensus 143 ~y~e~a~~li~y~~~~~y-----------------------------ygtp~~l~~~vd~~h~~~i~ 180 (1276)
+++.|++.| ||+|++|+ |||++||+.||++||+.||+
T Consensus 29 dl~gi~~~l-dyl~~LGv~~I~l~Pi~~~~~~~~GYd~~dy~~id~~~Gt~~df~~lv~~~h~~Gi~ 94 (558)
T 1uok_A 29 DLRGIISKL-DYLKELGIDVIWLSPVYESPNDDNGYDISDYCKIMNEFGTMEDWDELLHEMHERNMK 94 (558)
T ss_dssp CHHHHHTTH-HHHHHHTCCEEEECCCEECCCTTTTSSCSEEEEECGGGCCHHHHHHHHHHHHHTTCE
T ss_pred CHHHHHHHH-HHHHHcCCCEEEECCcccCCCCCCCCCcccccccCcccCCHHHHHHHHHHHHHCCCE
Confidence 689999987 99999998 99999999999999999998
|
| >2ze0_A Alpha-glucosidase; TIM barrel, glucoside hydrolase, extremophIle, hydrolase; 2.00A {Geobacillus SP} | Back alignment and structure |
|---|
Probab=96.35 E-value=0.002 Score=77.79 Aligned_cols=37 Identities=27% Similarity=0.435 Sum_probs=35.0
Q ss_pred ChHHHHHHHHHHHHhcCc-----------------------------CCCHHHHHHHHHHHHHcCCC
Q psy9003 143 GTPEQLKYLVDECHKAGL-----------------------------FGTPEQLKYLVDECHKAGLF 180 (1276)
Q Consensus 143 ~y~e~a~~li~y~~~~~y-----------------------------ygtp~~l~~~vd~~h~~~i~ 180 (1276)
+++.|++.| ||+|++|+ |||++||+.||++||++||+
T Consensus 29 d~~gi~~~l-dyl~~lGv~~i~l~Pi~~~~~~~~gY~~~dy~~id~~~Gt~~d~~~lv~~~h~~Gi~ 94 (555)
T 2ze0_A 29 DLRGIIEKL-DYLVELGVDIVWICPIYRSPNADNGYDISDYYAIMDEFGTMDDFDELLAQAHRRGLK 94 (555)
T ss_dssp CHHHHHHTH-HHHHHHTCCEEEECCCEECCCTTTTCSCSEEEEECGGGCCHHHHHHHHHHHHHTTCE
T ss_pred CHHHHHHHH-HHHHHcCCCEEEeCCcccCCCCCCCcCcccccccCcccCCHHHHHHHHHHHHHCCCE
Confidence 789999886 99999998 99999999999999999998
|
| >1g94_A Alpha-amylase; beta-alpha-8-barrel, 3 domain structure, hydrolase; HET: DAF GLC; 1.74A {Pseudoalteromonas haloplanktis} SCOP: b.71.1.1 c.1.8.1 PDB: 1g9h_A* 1l0p_A 1aqm_A* 1aqh_A* 1b0i_A 1jd7_A 1jd9_A 1kxh_A* | Back alignment and structure |
|---|
Probab=96.33 E-value=0.002 Score=75.70 Aligned_cols=38 Identities=18% Similarity=0.176 Sum_probs=34.3
Q ss_pred ChHHHHHHHHHHHHhcCc-------------------------------CCCHHHHHHHHHHHHHcCCC
Q psy9003 143 GTPEQLKYLVDECHKAGL-------------------------------FGTPEQLKYLVDECHKAGLF 180 (1276)
Q Consensus 143 ~y~e~a~~li~y~~~~~y-------------------------------ygtp~~l~~~vd~~h~~~i~ 180 (1276)
+++.|+++|+||+|++|+ |||++||+.||++||++||+
T Consensus 12 ~~~gi~~~lldyL~~LGv~~I~l~Pi~~~~~~~~~~~gY~~~~y~idp~~Gt~~dfk~Lv~~aH~~Gi~ 80 (448)
T 1g94_A 12 NWQDVAQECEQYLGPKGYAAVQVSPPNEHITGSQWWTRYQPVSYELQSRGGNRAQFIDMVNRCSAAGVD 80 (448)
T ss_dssp CHHHHHHHHHHTHHHHTCCEEEECCCSCBBCSSSGGGGGSBSCSCSCBTTBCHHHHHHHHHHHHHTTCE
T ss_pred cHHHHHHHHHHHHHHcCCCEEEECCccccCCCCCCcccccccccccCCCCCCHHHHHHHHHHHHHCCCE
Confidence 599999999999999998 78888888888888888888
|
| >3k8k_A Alpha-amylase, SUSG; alpha8/BETA8 barrel, CBM, beta-sandwich, membrane protein; 2.20A {Bacteroides thetaiotaomicron} PDB: 3k8m_A* 3k8l_A* | Back alignment and structure |
|---|
Probab=96.33 E-value=0.0019 Score=80.05 Aligned_cols=45 Identities=22% Similarity=0.286 Sum_probs=41.0
Q ss_pred ccccccCC--------ChHHHHHHHHHHHHhcCc----------------------------CCCHHHHHHHHHHHHHcC
Q psy9003 135 ECHKAGLF--------GTPEQLKYLVDECHKAGL----------------------------FGTPEQLKYLVDECHKAG 178 (1276)
Q Consensus 135 e~h~gs~~--------~y~e~a~~li~y~~~~~y----------------------------ygtp~~l~~~vd~~h~~~ 178 (1276)
|||.+||. +++.|++.| ||++++|+ |||++||+.||++||+.|
T Consensus 42 ~i~~~~f~~~~~~~~G~~~g~~~~l-~yl~~lGv~~i~l~Pi~~~~~~~gY~~~dy~~i~~~~Gt~~d~~~lv~~~h~~g 120 (669)
T 3k8k_A 42 QLLLYSFADSDGDGYGDLNGVTQKL-DYLNQLGVKALWLSPIHPCMSYHGYDVTDYTKVNPQLGTESDFDRLVTEAHNRG 120 (669)
T ss_dssp EECTTTSCCSSSSSSCCHHHHHTTH-HHHHTTTCSEEEECCCSSBSSTTCCSBSCTTSCCTTTCCHHHHHHHHHHHHHTT
T ss_pred EEEhHHhcCCCCCCCcCHHHHHHHH-HHHHHcCCCEEEecccccCCCCCCCCcccccccccccCCHHHHHHHHHHHHHcC
Confidence 89999986 689998875 89999998 899999999999999999
Q ss_pred CC
Q psy9003 179 LF 180 (1276)
Q Consensus 179 i~ 180 (1276)
|+
T Consensus 121 i~ 122 (669)
T 3k8k_A 121 IK 122 (669)
T ss_dssp CE
T ss_pred CE
Confidence 98
|
| >1wza_A Alpha-amylase A; hydrolase, halophilic, thermophilic; 1.60A {Halothermothrix orenii} SCOP: b.71.1.1 c.1.8.1 | Back alignment and structure |
|---|
Probab=96.32 E-value=0.0018 Score=76.68 Aligned_cols=45 Identities=24% Similarity=0.423 Sum_probs=41.0
Q ss_pred ccccccCC--------ChHHHHHHHHHHH--------HhcCc----------------------------CCCHHHHHHH
Q psy9003 135 ECHKAGLF--------GTPEQLKYLVDEC--------HKAGL----------------------------FGTPEQLKYL 170 (1276)
Q Consensus 135 e~h~gs~~--------~y~e~a~~li~y~--------~~~~y----------------------------ygtp~~l~~~ 170 (1276)
|||.+||. +++.|.++| ||+ |++|+ |||++||+.|
T Consensus 9 qi~~~~F~~~~~~g~Gdl~gi~~~L-dyL~~~~~~~~~~LGv~~I~L~Pi~~~~~~~GYd~~dy~~idp~~Gt~~d~~~L 87 (488)
T 1wza_A 9 EIFVRSFYDSDGDGIGDLKGIIEKL-DYLNDGDPETIADLGVNGIWLMPIFKSPSYHGYDVTDYYKINPDYGTLEDFHKL 87 (488)
T ss_dssp EECGGGSCCSSSSSCCCHHHHHHTH-HHHCCSCTTCCSSCCCSEEEECCCEECSSSSCCSCSEEEEECGGGCCHHHHHHH
T ss_pred EEEChhhcCCCCCCcCCHHHHHHhh-hhhhccccchhhhcCccEEEECCcccCCCCCCcCcccccccCcccCCHHHHHHH
Confidence 77777776 589999887 999 99998 9999999999
Q ss_pred HHHHHHcCCC
Q psy9003 171 VDECHKAGLF 180 (1276)
Q Consensus 171 vd~~h~~~i~ 180 (1276)
|++||+.||+
T Consensus 88 v~~aH~~Gi~ 97 (488)
T 1wza_A 88 VEAAHQRGIK 97 (488)
T ss_dssp HHHHHHTTCE
T ss_pred HHHHHHCCCE
Confidence 9999999998
|
| >2dh2_A 4F2 cell-surface antigen heavy chain; TIM-barrel, glycosidase like, antiparallel beta-sheet, greek terminal domain, extracellular domain; 2.10A {Homo sapiens} PDB: 2dh3_A | Back alignment and structure |
|---|
Probab=96.14 E-value=0.0016 Score=76.18 Aligned_cols=45 Identities=16% Similarity=0.163 Sum_probs=39.8
Q ss_pred ccc-cccCC-----ChHHHHHHHHHHHHhcCc---------------------------CCCHHHHHHHHHHHHHcCCC
Q psy9003 135 ECH-KAGLF-----GTPEQLKYLVDECHKAGL---------------------------FGTPEQLKYLVDECHKAGLF 180 (1276)
Q Consensus 135 e~h-~gs~~-----~y~e~a~~li~y~~~~~y---------------------------ygtp~~l~~~vd~~h~~~i~ 180 (1276)
||| .+||. +++-|.+.| ||+|++|+ |||++||+.||++||+.||+
T Consensus 20 qi~~~~sf~gdg~Gdl~gi~~~L-dyl~~LGv~~i~l~Pi~~~~~~~y~~~dy~~idp~~Gt~~d~~~lv~~ah~~Gi~ 97 (424)
T 2dh2_A 20 RIGDLQAFQGHGAGNLAGLKGRL-DYLSSLKVKGLVLGPIHKNQKDDVAQTDLLQIDPNFGSKEDFDSLLQSAKKKSIR 97 (424)
T ss_dssp EECCHHHHHCTTCCSHHHHHTTH-HHHHHTTCSEEEECCCEEECTTCSTTEEEEEECGGGCCHHHHHHHHHHHHHTTCE
T ss_pred EEcCccccCCCCCCCHHHHHHHH-HHHHHcCCCEEEECCCCCCCCCCCCcccccccCccCCCHHHHHHHHHHHHHCCCE
Confidence 777 66654 788999887 89999998 99999999999999999998
|
| >1hvx_A Alpha-amylase; hydrolase, glycosyltransferase, thermostability; 2.00A {Geobacillus stearothermophilus} SCOP: b.71.1.1 c.1.8.1 | Back alignment and structure |
|---|
Probab=96.12 E-value=0.003 Score=75.56 Aligned_cols=17 Identities=6% Similarity=-0.050 Sum_probs=15.9
Q ss_pred ChHHHHHHHHHHHHhcCc
Q psy9003 143 GTPEQLKYLVDECHKAGL 160 (1276)
Q Consensus 143 ~y~e~a~~li~y~~~~~y 160 (1276)
+|+.|+++| ||+|++|+
T Consensus 22 ~~~gi~~~L-dyLk~LGv 38 (515)
T 1hvx_A 22 LWTKVANEA-NNLSSLGI 38 (515)
T ss_dssp HHHHHHHHH-HHHHHTTC
T ss_pred cHHHHHHHH-HHHHhcCC
Confidence 589999998 99999999
|
| >2guy_A Alpha-amylase A; (beta-alpha) 8 barrel, hydrolase; HET: NAG BMA; 1.59A {Aspergillus oryzae} SCOP: b.71.1.1 c.1.8.1 PDB: 2gvy_A* 3kwx_A* 6taa_A 7taa_A* 2taa_A | Back alignment and structure |
|---|
Probab=96.11 E-value=0.003 Score=74.52 Aligned_cols=37 Identities=27% Similarity=0.477 Sum_probs=33.9
Q ss_pred ChHHHHHHHHHHHHhcCc------------------------------------CCCHHHHHHHHHHHHHcCCC
Q psy9003 143 GTPEQLKYLVDECHKAGL------------------------------------FGTPEQLKYLVDECHKAGLF 180 (1276)
Q Consensus 143 ~y~e~a~~li~y~~~~~y------------------------------------ygtp~~l~~~vd~~h~~~i~ 180 (1276)
+++.|++.| ||+|++|+ |||++||+.||++||++||+
T Consensus 41 ~~~gi~~~L-dyL~~lGvt~I~l~Pi~~~~~~~~~~~~~~~GY~~~d~~~idp~~Gt~~df~~lv~~~H~~Gi~ 113 (478)
T 2guy_A 41 TWQGIIDKL-DYIQGMGFTAIWITPVTAQLPQTTAYGDAYHGYWQQDIYSLNENYGTADDLKALSSALHERGMY 113 (478)
T ss_dssp CHHHHHHTH-HHHHTTTCCEEEECCCEEECCCCBTTBCCTTSCSEEEEEEECTTSCCHHHHHHHHHHHHHTTCE
T ss_pred CHHHHHHHH-HHHHhcCCCEEEeCCcccCCccccCCCCCCCCCCcccccccCccCCCHHHHHHHHHHHHHCCCE
Confidence 799999998 99999988 88999999999999999988
|
| >2z1k_A (NEO)pullulanase; hydrolase, structural genomics, NPPSFA, national project on structural and functional analyses; HET: GLC; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.11 E-value=0.0029 Score=74.59 Aligned_cols=37 Identities=22% Similarity=0.224 Sum_probs=35.1
Q ss_pred ChHHHHHHHHHHHHhcCc----------------------------CCCHHHHHHHHHHHHHcCCC
Q psy9003 143 GTPEQLKYLVDECHKAGL----------------------------FGTPEQLKYLVDECHKAGLF 180 (1276)
Q Consensus 143 ~y~e~a~~li~y~~~~~y----------------------------ygtp~~l~~~vd~~h~~~i~ 180 (1276)
+++.|+++| ||+|++|+ |||++||+.||++||++||+
T Consensus 48 ~~~gi~~~L-dyL~~LGv~~I~l~Pi~~~~~~~gY~~~dy~~idp~~Gt~~df~~lv~~~h~~Gi~ 112 (475)
T 2z1k_A 48 TLWGVAEKL-PYLLDLGVEAIYLNPVFASTANHRYHTVDYFQVDPILGGNEALRHLLEVAHAHGVR 112 (475)
T ss_dssp CHHHHHHTH-HHHHHHTCCEEEECCCEEESSTTCCSEEEEEEECGGGTCHHHHHHHHHHHHHTTCE
T ss_pred CHHHHHHHh-HHHHHcCCCEEEECCCcCCCCCCCcCCCCcCccCcccCCHHHHHHHHHHHHHCCCE
Confidence 678999987 99999998 99999999999999999998
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=96.09 E-value=0.15 Score=61.00 Aligned_cols=196 Identities=11% Similarity=0.066 Sum_probs=134.5
Q ss_pred hhhhhccCCCHHH-HHHHhhhhcccccCCCHHHHHHHHhhhhhcCCCCCcchhhhh--hhhhh------ccccCCCHHHH
Q psy9003 496 ECHKAGLFGTPEQ-LKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYL--VDECH------KAGLFGTPEQL 566 (1276)
Q Consensus 496 ~~~~~~~~~~~~~-~~~~~t~~~~a~~~g~~e~~~~lv~~~~~~~~~~t~~~l~~~--~~~~~------~~~~~~~~e~~ 566 (1276)
.+.+-...-++|. +..++..+ +..|.++...-|.+.|.+.|+.-+ ..+|+ |..|. .+...|.++.+
T Consensus 15 ~~~~k~~~~spe~~l~~~id~c---~k~G~~~~A~~lf~~M~~~Gv~pd--~~tyn~Li~~c~~~~~~~~~~~~~~l~~A 89 (501)
T 4g26_A 15 KAKKKAIQQSPEALLKQKLDMC---SKKGDVLEALRLYDEARRNGVQLS--QYHYNVLLYVCSLAEAATESSPNPGLSRG 89 (501)
T ss_dssp ---------CHHHHHHHHHHHT---TTSCCHHHHHHHHHHHHHHTCCCC--HHHHHHHHHHHTTCCCCSSSSCCHHHHHH
T ss_pred HHHHhcccCCCHHHHHHHHHHH---HhCCCHHHHHHHHHHHHHcCCCCC--HhHHHHHHHHHHhCCchhhhhhcchHHHH
Confidence 3334444445543 44455555 457888888888888888885433 22232 22222 23456778889
Q ss_pred HHHHHhhhhccCCCChhhhhhhhhhhcccccCCCHHHHHHHHhhhhhccCCCChhhhhhhHHHhhhccCCCCHHHHHHHH
Q psy9003 567 KYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLV 646 (1276)
Q Consensus 567 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 646 (1276)
.-+.+.|.+.|+..+.--.-..+....| .|.++.+.-+++.|.+.|+..+..--.-++.++.+ .|.++.+..++
T Consensus 90 ~~lf~~M~~~G~~Pd~~tyn~lI~~~~~---~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~---~g~~~~A~~l~ 163 (501)
T 4g26_A 90 FDIFKQMIVDKVVPNEATFTNGARLAVA---KDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCR---KGDADKAYEVD 163 (501)
T ss_dssp HHHHHHHHHTTCCCCHHHHHHHHHHHHH---HTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH---TTCHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHH---CCCHHHHHHHH
Confidence 9999999999977655544445555554 47899999999999999988776644456777766 47899999999
Q ss_pred HHHHhhcCCCChHHHhhhhhhhhhcccCCChhHHHHHHHHHHhhccCCChhHHHhhHHH
Q psy9003 647 DECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDE 705 (1276)
Q Consensus 647 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 705 (1276)
+.|.+.|---+.....-+++++.+++ .++.+.-+++.|.+.++..+......+++.
T Consensus 164 ~~M~~~G~~Pd~~ty~~Li~~~~~~g---~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~ 219 (501)
T 4g26_A 164 AHMVESEVVPEEPELAALLKVSMDTK---NADKVYKTLQRLRDLVRQVSKSTFDMIEEW 219 (501)
T ss_dssp HHHHHTTCCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHTSSBCHHHHHHHHHH
T ss_pred HHHHhcCCCCCHHHHHHHHHHHhhCC---CHHHHHHHHHHHHHhCCCcCHHHHHHHHHH
Confidence 99999887777777777888887765 578888889999988887766655555553
|
| >1wpc_A Glucan 1,4-alpha-maltohexaosidase; maltohexaose-producing amylase, alpha-amylase, acarbose, HYD; HET: ACI GLC GAL; 1.90A {Bacillus SP} SCOP: b.71.1.1 c.1.8.1 PDB: 1wp6_A* 2d3l_A* 2d3n_A* 2die_A 2gjp_A* 2gjr_A 1w9x_A* | Back alignment and structure |
|---|
Probab=96.03 E-value=0.0037 Score=74.03 Aligned_cols=17 Identities=6% Similarity=-0.081 Sum_probs=15.9
Q ss_pred ChHHHHHHHHHHHHhcCc
Q psy9003 143 GTPEQLKYLVDECHKAGL 160 (1276)
Q Consensus 143 ~y~e~a~~li~y~~~~~y 160 (1276)
+|+.|+++| ||+|++|+
T Consensus 23 ~~~gi~~~L-dyL~~LGv 39 (485)
T 1wpc_A 23 HWNRLNSDA-SNLKSKGI 39 (485)
T ss_dssp HHHHHHHHH-HHHHHHTC
T ss_pred cHHHHHHHH-HHHHHcCC
Confidence 689999998 99999998
|
| >1ua7_A Alpha-amylase; beta-alpha-barrels, acarbose, greek-KEY motif, hydrolase; HET: ACI GLD GLC G6D BGC; 2.21A {Bacillus subtilis} SCOP: b.71.1.1 c.1.8.1 PDB: 1bag_A* 3dc0_A | Back alignment and structure |
|---|
Probab=95.95 E-value=0.003 Score=73.66 Aligned_cols=17 Identities=18% Similarity=0.259 Sum_probs=15.8
Q ss_pred ChHHHHHHHHHHHHhcCc
Q psy9003 143 GTPEQLKYLVDECHKAGL 160 (1276)
Q Consensus 143 ~y~e~a~~li~y~~~~~y 160 (1276)
+|+.|+++| ||+|++|+
T Consensus 15 ~~~~i~~~l-~yl~~lG~ 31 (422)
T 1ua7_A 15 SFNTLKHNM-KDIHDAGY 31 (422)
T ss_dssp CHHHHHHTH-HHHHHTTC
T ss_pred CHHHHHHHH-HHHHHcCC
Confidence 799999997 99999998
|
| >1ud2_A Amylase, alpha-amylase; calcium-free, alkaline, hydrolase; 2.13A {Bacillus SP} SCOP: b.71.1.1 c.1.8.1 PDB: 1ud4_A 1ud5_A 1ud6_A 1ud8_A 1ud3_A | Back alignment and structure |
|---|
Probab=95.83 E-value=0.0051 Score=72.71 Aligned_cols=17 Identities=12% Similarity=-0.038 Sum_probs=15.8
Q ss_pred ChHHHHHHHHHHHHhcCc
Q psy9003 143 GTPEQLKYLVDECHKAGL 160 (1276)
Q Consensus 143 ~y~e~a~~li~y~~~~~y 160 (1276)
+|+.|+++| ||+|++|+
T Consensus 21 ~~~gi~~~L-dyL~~LGv 37 (480)
T 1ud2_A 21 HWNRLHDDA-AALSDAGI 37 (480)
T ss_dssp HHHHHHHHH-HHHHHHTC
T ss_pred cHHHHHHHH-HHHHHcCC
Confidence 689999987 99999998
|
| >1zy9_A Alpha-galactosidase; TM1192, struc genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI, hydrolase; 2.34A {Thermotoga maritima} SCOP: b.30.5.11 c.1.8.13 | Back alignment and structure |
|---|
Probab=95.59 E-value=0.022 Score=69.33 Aligned_cols=85 Identities=14% Similarity=0.184 Sum_probs=60.1
Q ss_pred HHHHHHHHHHcCCEEEEEEeccccCCcccCCCcCCCCCCCcccccCCCCCC----CCCC--CcCCCCCcHHHHHHHHHHH
Q psy9003 1039 LKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTH----PLWD--SRLFNYSEIEVLRFLLSNL 1112 (1276)
Q Consensus 1039 fK~LV~alHk~GI~VILDvV~NHt~~~~~~~~~~f~g~~~~Yy~~~~~g~~----~~W~--g~~LN~~np~Vr~~Iidsl 1112 (1276)
++.||+.+|++||++.+-+-+.-...+.. .+. ..+.|+... +|.. ..|. ...+|+.+|++++++.+.+
T Consensus 252 lk~lvd~lh~~Glk~Giw~~P~~v~~~S~----ly~-~~pdw~v~~-~G~~~~~~~~W~~~~~~lD~t~P~a~~~~~~~~ 325 (564)
T 1zy9_A 252 VEEMAKVIAENGFIPGIWTAPFSVSETSD----VFN-EHPDWVVKE-NGEPKMAYRNWNKKIYALDLSKDEVLNWLFDLF 325 (564)
T ss_dssp HHHHHHHHHHTTCEEEEEECTTEEETTCH----HHH-HCGGGBCEE-TTEECEEEEETTEEEEEBCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCEEEEEeCCCccCCCCh----hHH-hCCCeEEec-CCeeeeeecccCCceeecCCCCHHHHHHHHHHH
Confidence 99999999999999999876643322210 011 123444332 2321 2355 3568999999999999999
Q ss_pred HHHHHhCCCcEEccCCcc
Q psy9003 1113 RWYLDEYQFDGFRFDGVT 1130 (1276)
Q Consensus 1113 ~~Wv~eygVDGFRfD~a~ 1130 (1276)
+.+ .++|||||.+|...
T Consensus 326 ~~~-~~~GVD~iK~D~~~ 342 (564)
T 1zy9_A 326 SSL-RKMGYRYFKIDFLF 342 (564)
T ss_dssp HHH-HHTTCCEEEECCGG
T ss_pred HHH-HhcCCCEEEEcCCC
Confidence 999 77999999999854
|
| >2aaa_A Alpha-amylase; glycosidase; 2.10A {Aspergillus niger} SCOP: b.71.1.1 c.1.8.1 | Back alignment and structure |
|---|
Probab=95.58 E-value=0.0062 Score=72.05 Aligned_cols=37 Identities=32% Similarity=0.523 Sum_probs=33.8
Q ss_pred ChHHHHHHHHHHHHhcCc------------------------------------CCCHHHHHHHHHHHHHcCCC
Q psy9003 143 GTPEQLKYLVDECHKAGL------------------------------------FGTPEQLKYLVDECHKAGLF 180 (1276)
Q Consensus 143 ~y~e~a~~li~y~~~~~y------------------------------------ygtp~~l~~~vd~~h~~~i~ 180 (1276)
+++.|++.| ||+|++|+ |||++||+.||++||++||+
T Consensus 41 ~~~gi~~~L-dyL~~LGv~~I~l~Pi~~~~~~~~~~~~~~~GY~~~dy~~id~~~Gt~~df~~lv~~~H~~Gi~ 113 (484)
T 2aaa_A 41 SWQGIIDHL-DYIEGMGFTAIWISPITEQLPQDTADGEAYHGYWQQKIYDVNSNFGTADNLKSLSDALHARGMY 113 (484)
T ss_dssp CHHHHHHTH-HHHHTTTCCEEEECCCEEECCCCBTTBCSTTSCSEEEEEEECTTTCCHHHHHHHHHHHHTTTCE
T ss_pred CHHHHHHHH-HHHHhcCCCEEEeCccccCcccccccCCCCCCcCcccccccCcccCCHHHHHHHHHHHHHCCCE
Confidence 689999998 99999987 89999999999999999998
|
| >1mxg_A Alpha amylase; hyperthermostable, family 13 glycosyl hydrola (beta/alpha)8-barrel, hydrolase; HET: ACR ETE; 1.60A {Pyrococcus woesei} SCOP: b.71.1.1 c.1.8.1 PDB: 1mwo_A* 1mxd_A* 3qgv_A* | Back alignment and structure |
|---|
Probab=95.57 E-value=0.0079 Score=70.55 Aligned_cols=16 Identities=19% Similarity=0.119 Sum_probs=15.1
Q ss_pred hHHHHHHHHHHHHhcCc
Q psy9003 144 TPEQLKYLVDECHKAGL 160 (1276)
Q Consensus 144 y~e~a~~li~y~~~~~y 160 (1276)
|+.|+++| ||+|++|+
T Consensus 27 ~~gi~~~L-dyl~~lGv 42 (435)
T 1mxg_A 27 WDHIRSKI-PEWYEAGI 42 (435)
T ss_dssp HHHHHHHH-HHHHHHTC
T ss_pred HHHHHHHH-HHHHHcCC
Confidence 89999997 99999998
|
| >3czg_A Sucrose hydrolase; (alpha/beta)8-barrel; HET: GLC; 1.80A {Xanthomonas axonopodis PV} PDB: 3cze_A* 3czl_A* 3czk_A* 2wpg_A | Back alignment and structure |
|---|
Probab=95.52 E-value=0.0053 Score=75.76 Aligned_cols=37 Identities=16% Similarity=0.244 Sum_probs=35.1
Q ss_pred ChHHHHHHHHHHHHhcCc-------------------------------CCCHHHHHHHHHHHHHcCCC
Q psy9003 143 GTPEQLKYLVDECHKAGL-------------------------------FGTPEQLKYLVDECHKAGLF 180 (1276)
Q Consensus 143 ~y~e~a~~li~y~~~~~y-------------------------------ygtp~~l~~~vd~~h~~~i~ 180 (1276)
+++.|++.| ||+|++|+ |||++||+.||++||++||+
T Consensus 104 dl~gi~~~L-dyL~~LGv~~I~L~Pi~~~~~~~~~~GY~~~dy~~vdp~~Gt~~df~~Lv~~aH~~GI~ 171 (644)
T 3czg_A 104 TLQGVAERV-PYLQELGVRYLHLLPFLRARAGDNDGGFAVSDYGQVEPSLGSNDDLVALTSRLREAGIS 171 (644)
T ss_dssp SHHHHHHTH-HHHHHHTCCEEEECCCBCBCSSCCTTTTSBSCTTSBCGGGCCHHHHHHHHHHHHHTTCE
T ss_pred CHHHHHHHH-HHHHHcCCCEEEeCCCCcCCCCCCCCCcCcccccccCcccCCHHHHHHHHHHHHHCCCE
Confidence 689999998 99999887 99999999999999999999
|
| >3vmn_A Dextranase; TIM barrel, immunoglobrin fold, greek-KEY-motif, glycoside H family 66, hydrolase; 1.60A {Streptococcus mutans} PDB: 3vmo_A* 3vmp_A* | Back alignment and structure |
|---|
Probab=95.48 E-value=0.025 Score=69.16 Aligned_cols=90 Identities=14% Similarity=0.192 Sum_probs=57.1
Q ss_pred CHHHHHHHHHHHHHcCCEEEE-EEeccccCCcccCCCcCCCCCCCcccc--cCC--CCCC--------CCCC-CcCCCCC
Q psy9003 1035 TPEQLKYLVDECHKAGLYVLL-DVVHSHASKNVLDGLNEFDGTQACFFH--DGP--RGTH--------PLWD-SRLFNYS 1100 (1276)
Q Consensus 1035 t~eEfK~LV~alHk~GI~VIL-DvV~NHt~~~~~~~~~~f~g~~~~Yy~--~~~--~g~~--------~~W~-g~~LN~~ 1100 (1276)
...-.|.+|+++|+.||+-|. -++|--. .+. .++....||. ... .|.. ..|. ---+|..
T Consensus 189 ~~~tVk~yI~~ah~~gm~aM~YnmiYaA~-~~~------~~g~~~~~~~y~~~~~~~g~~~~~~~~~~~g~p~~~~~nP~ 261 (643)
T 3vmn_A 189 ETDAVKALVNRVHQTGAVAMLYNMILAQN-ANE------TAVLPDTEYIYNYETGGYGQNGQVMTYSIDDKPLQYYYNPL 261 (643)
T ss_dssp EHHHHHHHHHHHHHTTCEEEEEEESSEEE-TTS------CCSSCGGGBCEESSSBTTBSTTSBCEEEETTEEEEEEBCTT
T ss_pred hHHHHHHHHHHHHHcCchhhhhHhhhccc-cCc------ccCCcchhhhhccccccccccCccceeccCCCceEEEECCC
Confidence 468899999999999998765 2222211 111 1122221211 110 0111 0111 1346899
Q ss_pred cHHHHHHHHHHHHHHHHhCCCcEEccCCccc
Q psy9003 1101 EIEVLRFLLSNLRWYLDEYQFDGFRFDGVTS 1131 (1276)
Q Consensus 1101 np~Vr~~Iidsl~~Wv~eygVDGFRfD~a~~ 1131 (1276)
+|++|+||.+.+...+++|+||||.+|..+.
T Consensus 262 np~wq~yI~~~~~dvv~~~dfDG~HiD~lG~ 292 (643)
T 3vmn_A 262 SKSWQNYISNAMAQAMKNGGFDGWQGDTIGD 292 (643)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCCEEEEECSCC
T ss_pred CHHHHHHHHHHHHHHHHhCCCceEeecccCC
Confidence 9999999999999999999999999997664
|
| >2wc7_A Alpha amylase, catalytic region; CD/PUL-hydrolyzing enzymes, hydrolase, glycosidase, neopullu; 2.37A {Nostoc punctiforme} PDB: 2wcs_A 2wkg_A | Back alignment and structure |
|---|
Probab=95.37 E-value=0.0069 Score=71.74 Aligned_cols=37 Identities=24% Similarity=0.341 Sum_probs=34.5
Q ss_pred ChHHHHHHHHHHHHhcCc----------------------------CCCHHHHHHHHHHHHHcCCC
Q psy9003 143 GTPEQLKYLVDECHKAGL----------------------------FGTPEQLKYLVDECHKAGLF 180 (1276)
Q Consensus 143 ~y~e~a~~li~y~~~~~y----------------------------ygtp~~l~~~vd~~h~~~i~ 180 (1276)
+++-|++.| ||+|++|+ |||++||+.||++||+.||+
T Consensus 54 dl~gi~~~L-dyL~~LGv~~I~L~Pi~~~~~~~GYd~~dy~~idp~~Gt~~df~~Lv~~aH~~Gi~ 118 (488)
T 2wc7_A 54 DLWGIMEDL-DYIQNLGINAIYFTPIFQSASNHRYHTHDYYQVDPMLGGNEAFKELLDAAHQRNIK 118 (488)
T ss_dssp CHHHHHHTH-HHHHHHTCCEEEESCCEEECTTCTTSEEEEEEECGGGTHHHHHHHHHHHHHHTTCE
T ss_pred CHHHHHHhh-HHHHHcCCCEEEECCCCCCCCCCCCCCcCccccCcccCCHHHHHHHHHHHHHCCCE
Confidence 568888887 99999998 99999999999999999998
|
| >4fnq_A Alpha-galactosidase AGAB; glycoside hydrolase, hydrolase; 1.80A {Geobacillus stearothermophilus} PDB: 4fnr_A 4fnu_A* 4fnt_A* 4fns_A* 4fnp_A* | Back alignment and structure |
|---|
Probab=95.15 E-value=0.052 Score=68.05 Aligned_cols=136 Identities=15% Similarity=0.115 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHHcCCEEEEEEeccccCCcccCCCcCCCCCCCcccccCCCCCCCC-CCCcCCCCCcHHHHHHHHHHHHHH
Q psy9003 1037 EQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPL-WDSRLFNYSEIEVLRFLLSNLRWY 1115 (1276)
Q Consensus 1037 eEfK~LV~alHk~GI~VILDvV~NHt~~~~~~~~~~f~g~~~~Yy~~~~~g~~~~-W~g~~LN~~np~Vr~~Iidsl~~W 1115 (1276)
..||.|++.+|++||+.-+=+-+--.+.+... -...+.|....+.+.... .+...||+.+|+|++++.+.+...
T Consensus 392 ~Glk~Lad~vh~~GmkfGLW~epe~v~~~S~l-----~~~hPdw~~~~~~~~~~~~r~q~~LD~~~P~v~~y~~~~i~~l 466 (729)
T 4fnq_A 392 NGLDGLAKQVNELGMQFGLWVEPEMVSPNSEL-----YRKHPDWCLHVPNRPRSEGRNQLVLDYSREDVCDYIIETISNV 466 (729)
T ss_dssp THHHHHHHHHHHTTCEEEEEECTTEECSSSHH-----HHHCGGGBCCCTTSCCCCBTTBEEBCTTSHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHCCCEEEEEeeccccCCCcHH-----HHhCchheeccCccCCccCCccccccCCChhHHHHHHHHHHHH
Confidence 57999999999999999887765433332210 011122322222222211 123468999999999999999999
Q ss_pred HHhCCCcEEccCCccccccccCCCCCCCCCCCccccCCCCCchHHHHHHHHHHHHHhhCCCeEEEEEcc
Q psy9003 1116 LDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAEDV 1184 (1276)
Q Consensus 1116 v~eygVDGFRfD~a~~L~~~d~g~g~~~~~~~~~~~~~~~d~~a~~Fl~el~~~Vr~~~PdvilIAE~~ 1184 (1276)
++++|||.|.+|....+... +. ...+....+ ........-+..+.+.+++.+|++++-.=.+
T Consensus 467 l~~~GidYiK~D~n~~~~~~----~~--~~~~~~~~~-~~~~~~~~~~y~l~d~L~~~~P~i~ie~C~~ 528 (729)
T 4fnq_A 467 LASAPITYVKWDMNRHMTEI----GS--SALPPERQR-ETAHRYMLGLYRVMDEMTSRFPHILFESCSG 528 (729)
T ss_dssp HTTTTCCEEEEECCCCCCSC----CC--TTSCGGGGG-GHHHHHHHHHHHHHHHHHHHCTTCEEEEEBT
T ss_pred HHHCCCCEEEEcCCCCCCcC----CC--CCCCcccch-hHHHHHHHHHHHHHHHHHHHCCCcEEEcccC
Confidence 99999999999975544210 00 000000000 0000111223456677889999987765443
|
| >1ht6_A AMY1, alpha-amylase isozyme 1; barley, beta-alpha-barrel, hydrolase; 1.50A {Hordeum vulgare} SCOP: b.71.1.1 c.1.8.1 PDB: 1p6w_A* 1rpk_A* 3bsg_A 2qpu_A* 1rp8_A* 1rp9_A* 2qps_A 3bsh_A* 1ava_A 1amy_A 1bg9_A* | Back alignment and structure |
|---|
Probab=95.10 E-value=0.0091 Score=69.28 Aligned_cols=36 Identities=25% Similarity=0.436 Sum_probs=30.5
Q ss_pred hHHHHHHHHHHHHhcCc-----------------------------CCCHHHHHHHHHHHHHcCCC
Q psy9003 144 TPEQLKYLVDECHKAGL-----------------------------FGTPEQLKYLVDECHKAGLF 180 (1276)
Q Consensus 144 y~e~a~~li~y~~~~~y-----------------------------ygtp~~l~~~vd~~h~~~i~ 180 (1276)
++.|++.| ||+|++|+ |||++||+.||++||++||+
T Consensus 20 ~~gi~~~l-dyl~~lGv~~i~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~~d~~~lv~~~h~~Gi~ 84 (405)
T 1ht6_A 20 YNMMMGKV-DDIAAAGVTHVWLPPPSHSVSNEGYMPGRLYDIDASKYGNAAELKSLIGALHGKGVQ 84 (405)
T ss_dssp HHHHHTTH-HHHHHTTCCEEEECCCSCBSSTTSSSBCCTTCGGGCTTCCHHHHHHHHHHHHHTTCE
T ss_pred HHHHHHHH-HHHHHcCCCEEEeCCCccCCCCCCCCccccccCCCccCCCHHHHHHHHHHHHHCCCE
Confidence 78888877 89999988 78888888888888888887
|
| >1jae_A Alpha-amylase; glycosidase, carbohydrate metabolism, 4-glucan-4-glucanohydrolase, hydrolase; 1.65A {Tenebrio molitor} SCOP: b.71.1.1 c.1.8.1 PDB: 1clv_A 1tmq_A 1viw_A* | Back alignment and structure |
|---|
Probab=95.00 E-value=0.0079 Score=71.16 Aligned_cols=39 Identities=13% Similarity=0.151 Sum_probs=33.3
Q ss_pred CCChHHHHHHHHHHHHhcCc---------------------------------CCCHHHHHHHHHHHHHcCCC
Q psy9003 141 LFGTPEQLKYLVDECHKAGL---------------------------------FGTPEQLKYLVDECHKAGLF 180 (1276)
Q Consensus 141 ~~~y~e~a~~li~y~~~~~y---------------------------------ygtp~~l~~~vd~~h~~~i~ 180 (1276)
| +++.|+++|+||+|++|+ |||++||+.||++||++||+
T Consensus 19 w-~~~gi~~~~ldyL~~LGv~~I~l~Pi~~~~~~~~~~~~~gYd~~dy~idp~~Gt~~d~~~lv~~~h~~Gi~ 90 (471)
T 1jae_A 19 W-KWNDIADECERFLQPQGFGGVQISPPNEYLVADGRPWWERYQPVSYIINTRSGDESAFTDMTRRCNDAGVR 90 (471)
T ss_dssp C-CHHHHHHHHHHTTTTTTEEEEECCCCSCBBCCTTCCGGGGGSBCCSCSEETTEEHHHHHHHHHHHHHTTCE
T ss_pred C-CHHHHHHHHHHHHHHcCCCEEEeCccccccCCCCCCcccccccccccccCCCCCHHHHHHHHHHHHHCCCE
Confidence 5 699999999999999988 67778888888888888777
|
| >3zss_A Putative glucanohydrolase PEP1A; alpha-glucan biosynthesis, glycoside hydrolase FA; 1.80A {Streptomyces coelicolor} PDB: 3zst_A* 3zt5_A* 3zt6_A* 3zt7_A* | Back alignment and structure |
|---|
Probab=94.69 E-value=0.018 Score=71.74 Aligned_cols=25 Identities=12% Similarity=-0.024 Sum_probs=22.0
Q ss_pred ccccccCC-------ChHHHHHHHHHHHHhcCc
Q psy9003 135 ECHKAGLF-------GTPEQLKYLVDECHKAGL 160 (1276)
Q Consensus 135 e~h~gs~~-------~y~e~a~~li~y~~~~~y 160 (1276)
|+|..||- +|+.|++.| ||+|+||+
T Consensus 236 Ei~~rsf~~~~~~~Gd~~gi~~~L-dyLk~LGv 267 (695)
T 3zss_A 236 EFFPRSEGTPHTPHGTFRTAARRL-PAIAAMGF 267 (695)
T ss_dssp ECCGGGSCCSSCCSCCHHHHGGGH-HHHHHTTC
T ss_pred EEehhHhcCCCCCCCCHHHHHHHH-HHHHhCCC
Confidence 99999974 689999875 99999998
|
| >3nme_A Ptpkis1 protein, SEX4 glucan phosphatase; dual specificity phosphatase, carbohydrate BIND hydrolase; 2.40A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=94.42 E-value=0.026 Score=63.30 Aligned_cols=46 Identities=13% Similarity=0.111 Sum_probs=38.1
Q ss_pred cEEEEEEccCCceEEEEeeccCCCcc----e-------EEEEEccCccccceEEEEEecCCC
Q psy9003 74 SVRCFEWAPSAQQLYLTGNVSLTPWS----I-------MEEASLSSIKLIQSIQYILTGVFG 124 (1276)
Q Consensus 74 g~~f~~wAP~A~~v~l~gdfn~~~w~----m-------~~~~~~~~~~~g~~yky~i~~~~g 124 (1276)
-++|+..+|+|++|+|+|+| ++|+ | +|++.+ .+.+|. |+||-. .||
T Consensus 171 ~v~f~~~~~~~~~V~v~GsF--~~W~~~~~l~k~~~~g~~~~~~-~L~~G~-y~YkFi-VDG 227 (294)
T 3nme_A 171 TVTLTLKDKGFSRVEISGLD--IGWGQRIPLTLGKGTGFWILKR-ELPEGQ-FEYKYI-IDG 227 (294)
T ss_dssp EEEEEEECSSCSCEEEEETT--TEEEEEEECEECTTTCEEEEEE-EECSEE-EEEEEE-ETT
T ss_pred cceeeeccCCCCEEEEEEec--cCCCCcccceEcCCCCEEEEEE-ECCCce-EEEEEE-ECC
Confidence 69999999999999999999 7776 5 999999 488985 777443 346
|
| >3edf_A FSPCMD, cyclomaltodextrinase; alpha-cyclodextrin complex, glycosidase, hydrolase; HET: CE6 ACX; 1.65A {Flavobacterium SP} PDB: 3edj_A* 3edk_A* 3ede_A 3edd_A* 1h3g_A | Back alignment and structure |
|---|
Probab=94.32 E-value=0.025 Score=69.13 Aligned_cols=37 Identities=24% Similarity=0.354 Sum_probs=33.9
Q ss_pred ChHHHHHHHHHHHHhcCc--------------------------------CCCHHHHHHHHHHHHHcCCC
Q psy9003 143 GTPEQLKYLVDECHKAGL--------------------------------FGTPEQLKYLVDECHKAGLF 180 (1276)
Q Consensus 143 ~y~e~a~~li~y~~~~~y--------------------------------ygtp~~l~~~vd~~h~~~i~ 180 (1276)
+++-|.+.| ||+|++|+ |||++||+.||++||+.||+
T Consensus 146 dl~gi~~~L-dyl~~LGv~aI~l~Pi~~~~~~~~~~~GY~~~dy~~idp~~Gt~~df~~Lv~~aH~~Gi~ 214 (601)
T 3edf_A 146 DIRGTIDHL-DYIAGLGFTQLWPTPLVENDAAAYSYHGYAATDHYRIDPRYGSNEDFVRLSTEARKRGMG 214 (601)
T ss_dssp CHHHHHHTH-HHHHHTTCCEEEESCCEECCCSSSGGGCCSCSEEEEECTTTCCHHHHHHHHHHHHHTTCE
T ss_pred CHHHHHHHH-HHHHHcCCCEEEECccccCCCCCCCCCCcCccccccccccCCCHHHHHHHHHHHHHcCCE
Confidence 478888876 89999998 89999999999999999999
|
| >1qho_A Alpha-amylase; glycoside hydrolase, starch degradation; HET: MAL ABD; 1.70A {Geobacillus stearothermophilus} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 PDB: 1qhp_A* | Back alignment and structure |
|---|
Probab=94.17 E-value=0.026 Score=70.00 Aligned_cols=37 Identities=22% Similarity=0.321 Sum_probs=33.5
Q ss_pred ChHHHHHHHHHHHHhcC--------------------------c-----------CCCHHHHHHHHHHHHHcCCC
Q psy9003 143 GTPEQLKYLVDECHKAG--------------------------L-----------FGTPEQLKYLVDECHKAGLF 180 (1276)
Q Consensus 143 ~y~e~a~~li~y~~~~~--------------------------y-----------ygtp~~l~~~vd~~h~~~i~ 180 (1276)
+++.|+++| ||+|++| | |||++||+.||++||++||+
T Consensus 50 dl~gi~~kL-dyLk~LGv~aIwL~Pi~~~~~~~~~~g~~~~~GYd~~Dy~~idp~~Gt~~df~~Lv~~aH~~Gik 123 (686)
T 1qho_A 50 DLEGVRQKL-PYLKQLGVTTIWLSPVLDNLDTLAGTDNTGYHGYWTRDFKQIEEHFGNWTTFDTLVNDAHQNGIK 123 (686)
T ss_dssp CHHHHHHTH-HHHHHHTCCEEEECCCEEECSSCSSTTCCCTTSCSEEEEEEECTTTCCHHHHHHHHHHHHHTTCE
T ss_pred CHHHHHHhh-HHHHhcCCCEEEECccccCCcccccCCCCCcCCcCcccccccCcccCCHHHHHHHHHHHHHCCCE
Confidence 579999997 8999984 3 89999999999999999998
|
| >1g5a_A Amylosucrase; glycosyltransferase, glycoside hydrolase, (beta-alpha)8 barrel; HET: EPE; 1.40A {Neisseria polysaccharea} SCOP: b.71.1.1 c.1.8.1 PDB: 1jg9_A* 1mw1_A* 1mw2_A* 1mw3_A* 3ueq_A* 1jgi_A* 1mvy_A* 1mw0_A* 1s46_A* 1zs2_A* | Back alignment and structure |
|---|
Probab=94.05 E-value=0.024 Score=69.70 Aligned_cols=37 Identities=22% Similarity=0.311 Sum_probs=34.3
Q ss_pred ChHHHHHHHHHHHHhcCc-------------------------------CCCHHHHHHHHHHHHHcCCC
Q psy9003 143 GTPEQLKYLVDECHKAGL-------------------------------FGTPEQLKYLVDECHKAGLF 180 (1276)
Q Consensus 143 ~y~e~a~~li~y~~~~~y-------------------------------ygtp~~l~~~vd~~h~~~i~ 180 (1276)
+++.|++.| +|+|++|+ |||++||+.||++||++||+
T Consensus 111 dl~gi~~~L-dyL~~LGv~~I~L~Pi~~~~~~~~~~GY~v~dy~~vdp~~Gt~~d~~~Lv~~ah~~GI~ 178 (628)
T 1g5a_A 111 DLKGLKDKI-PYFQELGLTYLHLMPLFKCPEGKSDGGYAVSSYRDVNPALGTIGDLREVIAALHEAGIS 178 (628)
T ss_dssp SHHHHHTTH-HHHHHHTCSEEEECCCBCCCSSCSTTTTSCSCSSSBCTTTCCHHHHHHHHHHHHHTTCE
T ss_pred CHHHHHHHH-HHHHHcCCCEEEeCCCCCCCCCCCCCCcCCcccCCcCccCCCHHHHHHHHHHHHHCCCE
Confidence 588899888 99999877 99999999999999999999
|
| >3bc9_A AMYB, alpha amylase, catalytic region; acarbose, thermostable, halophilic, N domain, starch binding, hydrolase; HET: G6D GLC ACI BGC ACR; 1.35A {Halothermothrix orenii} PDB: 3bcd_A* 3bcf_A | Back alignment and structure |
|---|
Probab=93.98 E-value=0.028 Score=68.85 Aligned_cols=16 Identities=19% Similarity=0.023 Sum_probs=14.9
Q ss_pred hHHHHHHHHHHHHhcCc
Q psy9003 144 TPEQLKYLVDECHKAGL 160 (1276)
Q Consensus 144 y~e~a~~li~y~~~~~y 160 (1276)
|+.|+++| ||+|++|+
T Consensus 149 ~~gi~~~L-dyLk~LGv 164 (599)
T 3bc9_A 149 WNLLAERA-PELAEAGF 164 (599)
T ss_dssp HHHHHHHH-HHHHHHTC
T ss_pred HHHHHHHH-HHHHHcCC
Confidence 89999997 89999999
|
| >3ucq_A Amylosucrase; thermostability, amylose synthesis, sucrose isomerization, beta/alpha-barrel, carbohydrate binding, transferase; 1.97A {Deinococcus geothermalis} PDB: 3uer_A* | Back alignment and structure |
|---|
Probab=93.74 E-value=0.031 Score=69.11 Aligned_cols=37 Identities=22% Similarity=0.221 Sum_probs=34.3
Q ss_pred ChHHHHHHHHHHHHhcCc-------------------------------CCCHHHHHHHHHHHHHcCCC
Q psy9003 143 GTPEQLKYLVDECHKAGL-------------------------------FGTPEQLKYLVDECHKAGLF 180 (1276)
Q Consensus 143 ~y~e~a~~li~y~~~~~y-------------------------------ygtp~~l~~~vd~~h~~~i~ 180 (1276)
+++.|++.| ||+|++|+ |||++||+.||++||+.||+
T Consensus 109 ~~~gl~~~L-dyL~~lGv~~v~l~P~~~~~~~~~~~GY~~~dy~~i~~~~Gt~~d~~~lv~~~h~~Gi~ 176 (655)
T 3ucq_A 109 TLKGVEERL-DYLEGLGVKYLHLMPLLRPREGENDGGYAVQDYRAVRPDLGTMDDLSALARALRGRGIS 176 (655)
T ss_dssp SHHHHHTTH-HHHHHTTCCEEEECCCEEECSSCCGGGTSEEEEEEECGGGCCHHHHHHHHHHHHHTTCE
T ss_pred CHHHHHHhh-HHHHHcCCCEEEECCCcCCCCCCCCCCcCCcCcCccCccCCCHHHHHHHHHHHHHCCCE
Confidence 688888877 89999998 99999999999999999998
|
| >1qnr_A Endo-1,4-B-D-mannanase; hydrolase, anomalous scattering; HET: NAG MAB; 1.4A {Trichoderma reesei} SCOP: c.1.8.3 PDB: 1qno_A* 1qnq_A* 1qnp_A* 1qns_A* | Back alignment and structure |
|---|
Probab=93.59 E-value=0.56 Score=52.08 Aligned_cols=112 Identities=9% Similarity=0.138 Sum_probs=66.2
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEEeccccCCcccCCCcCCCCCCCcccccCCCCCCCCCCCcCCCCCcHHHHHHHHHHHHH
Q psy9003 1035 TPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSNLRW 1114 (1276)
Q Consensus 1035 t~eEfK~LV~alHk~GI~VILDvV~NHt~~~~~~~~~~f~g~~~~Yy~~~~~g~~~~W~g~~LN~~np~Vr~~Iidsl~~ 1114 (1276)
..+.|.++|+.|+++||+||+|+.-++.... +. +.|.... + ......+.+|.+++.+.+.++.
T Consensus 88 ~~~~ld~~i~~a~~~Gi~vild~~~~w~~~g---------~~-~~~~~~~--g-----~~~~~~~~~~~~~~~~~~~~~~ 150 (344)
T 1qnr_A 88 GLQTLDYVVQSAEQHNLKLIIPFVNNWSDYG---------GI-NAYVNAF--G-----GNATTWYTNTAAQTQYRKYVQA 150 (344)
T ss_dssp TTHHHHHHHHHHHHHTCEEEEESCBSSSTTS---------HH-HHHHHHH--C-----SCTTGGGGCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCEEEEEeccCccccC---------CH-HHHHHHh--C-----CChhhhcCCHHHHHHHHHHHHH
Confidence 4688999999999999999999874431110 00 1110000 0 0013346678999999999999
Q ss_pred HHHhCCCc----EEccCCccccccccCCCCCCCCCCCccccCCCCCchHHHHHHHHHHHHHhhCCCeE-EEEE
Q psy9003 1115 YLDEYQFD----GFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEII-TIAE 1182 (1276)
Q Consensus 1115 Wv~eygVD----GFRfD~a~~L~~~d~g~g~~~~~~~~~~~~~~~d~~a~~Fl~el~~~Vr~~~Pdvi-lIAE 1182 (1276)
++++|+=+ +| ++.... . .. .........+++++.+.||+..|+.. ++|.
T Consensus 151 ~~~r~~~~p~v~~w--~l~NEp---------~------~~--~~~~~~~~~~~~~~~~~ir~~dp~~~v~~g~ 204 (344)
T 1qnr_A 151 VVSRYANSTAIFAW--ELGNEP---------R------CN--GCSTDVIVQWATSVSQYVKSLDSNHLVTLGD 204 (344)
T ss_dssp HHHHHTTCTTEEEE--ESCBSC---------C------CT--TCCTHHHHHHHHHHHHHHHHHCSSSEEECCC
T ss_pred HHHHhCCCCcEEEE--EcccCc---------c------cC--CCChHHHHHHHHHHHHHHHhcCCCCEEEECC
Confidence 99986421 11 111100 0 00 00112234688899999999999854 4554
|
| >1iv8_A Maltooligosyl trehalose synthase; beta alpha barrel, intramolecular transglucosylation, isomerase; HET: MLZ MLY; 1.90A {Sulfolobus acidocaldarius} SCOP: b.71.1.1 c.1.8.1 | Back alignment and structure |
|---|
Probab=93.30 E-value=0.038 Score=68.95 Aligned_cols=37 Identities=19% Similarity=0.304 Sum_probs=34.7
Q ss_pred ChHHHHHHHHHHHHhcCc------------------------------CCCHHHHHHHHHHHHHcCCC
Q psy9003 143 GTPEQLKYLVDECHKAGL------------------------------FGTPEQLKYLVDECHKAGLF 180 (1276)
Q Consensus 143 ~y~e~a~~li~y~~~~~y------------------------------ygtp~~l~~~vd~~h~~~i~ 180 (1276)
+|+.|++.| ||+|++|+ |||.+||+.||++||++||+
T Consensus 15 tf~gi~~~L-dYLk~LGVtaIwLsPi~~~~~gs~hGYdv~Dy~~Idp~lGt~edfk~LV~aaH~~GIk 81 (720)
T 1iv8_A 15 NFGDVIDNL-WYFXDLGVSHLYLSPVLMASPGSNHGYDVIDHSRINDELGGEKEYRRLIETAHTIGLG 81 (720)
T ss_dssp CHHHHHHTH-HHHHHHTCCEEEECCCEEECTTCSSCCSEEEEEEECTTTTHHHHHHHHHHHHHHTTCE
T ss_pred CHHHHHHHH-HHHHhCCCCEEEECCcccCCCCCCCCCCCccCCCcCccCCCHHHHHHHHHHHHHCCCE
Confidence 789999865 99999998 99999999999999999998
|
| >3hje_A 704AA long hypothetical glycosyltransferase; trehalose biosynthesis, maltooligoside trehalose synthase (M family 13 glycoside hydrolases; 1.90A {Sulfolobus tokodaii str} | Back alignment and structure |
|---|
Probab=93.22 E-value=0.033 Score=68.92 Aligned_cols=37 Identities=30% Similarity=0.336 Sum_probs=34.3
Q ss_pred ChHHHHHHHHHHHHhcCc------------------------------CCCHHHHHHHHHHHHHcCCC
Q psy9003 143 GTPEQLKYLVDECHKAGL------------------------------FGTPEQLKYLVDECHKAGLF 180 (1276)
Q Consensus 143 ~y~e~a~~li~y~~~~~y------------------------------ygtp~~l~~~vd~~h~~~i~ 180 (1276)
+|+++++.| ||++++|+ |||++||+.||++||++||+
T Consensus 13 tf~~i~~~L-dyL~~LGvt~V~LsPi~e~~~~s~~GYd~~Dy~~vdp~lGt~edfk~LV~~aH~~GI~ 79 (704)
T 3hje_A 13 KFSEIRNRL-DYFVELGVTHLYLSPVLKARPGSTHGYDVVDYNTINDELGGEEEYIRLIDEAKSKGLG 79 (704)
T ss_dssp CHHHHHTTH-HHHHHHTCSEEEECCCEEESTTCSSSCSEEEEEEECGGGTHHHHHHHHHHHHHHHTCE
T ss_pred CHHHHHHHH-HHHHHCCCCEEEECCCccCCCCCCCCCCCcCCCCcCccCCCHHHHHHHHHHHHHCCCE
Confidence 789999886 99999999 89999999999999999998
|
| >1d3c_A Cyclodextrin glycosyltransferase; alpha-amylase, product complex, oligosaccharide, family 13 glycosyl hydrolase, transglycosylation; HET: GLC; 1.78A {Bacillus circulans} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 PDB: 1cxf_A* 1cxk_A* 1cdg_A* 1cxe_A* 1cxh_A* 1cxi_A* 2cxg_A* 1cgv_A* 2dij_A* 1cgy_A* 1kck_A* 1cgx_A* 1cxl_A* 1cgw_A* 1tcm_A 1kcl_A* 1eo5_A* 1eo7_A* 1dtu_A* 1ot1_A* ... | Back alignment and structure |
|---|
Probab=93.04 E-value=0.044 Score=67.96 Aligned_cols=57 Identities=14% Similarity=0.312 Sum_probs=38.7
Q ss_pred eEEEEEcc---CCcEEEEEcc---CCCCccc-cc-ccee---cCCCeEEEEcCCCCCCCcccCcccEEEEEEEE
Q psy9003 782 CHKAGLLC---FMHVVCAAGD---FNNWNRE-EF-AYKK---LDFGKWELVLPPNPDGSCKLTHLSQVKLVVRN 844 (1276)
Q Consensus 782 a~FalwAP---~A~~VsLvGD---FN~wd~~-~~-pM~r---~~~GVWsl~Ip~~~~G~~~i~hGs~YkYrV~~ 844 (1276)
++|++-+| ..+.|.|+|+ +-+|++. .+ +|.. ....+|.+.++- +.| .-..|||.+..
T Consensus 589 v~f~v~~~~~~~g~~~~v~G~~~~LG~W~~~~a~~~l~~~~~~~~~~W~~~v~l-p~~-----~~~eyK~~~~~ 656 (686)
T 1d3c_A 589 VRFVVNNATTALGQNVYLTGSVSELGNWDPAKAIGPMYNQVVYQYPNWYYDVSV-PAG-----KTIEFKFLKKQ 656 (686)
T ss_dssp EEEEEECCCCCTTCEEEEEESSGGGTTTCGGGCBCCCBCSSSSCTTCEEEEEEE-ETT-----CEEEEEEEEEE
T ss_pred EEEEEeeccCCCCCEEEEEeCcHHhCCCChhhhhhhhccccCCCCCeEEEEEEe-CCC-----CcEEEEEEEEc
Confidence 58888875 3678888865 3488864 56 7876 667899888852 222 23578887764
|
| >1gcy_A Glucan 1,4-alpha-maltotetrahydrolase; beta-alpha-barrel, beta sheet; 1.60A {Pseudomonas stutzeri} SCOP: b.71.1.1 c.1.8.1 PDB: 1jdc_A* 1jda_A* 1jdd_A* 1qi5_A* 1qi3_A* 1qi4_A* 2amg_A 1qpk_A* | Back alignment and structure |
|---|
Probab=92.71 E-value=0.076 Score=63.79 Aligned_cols=57 Identities=19% Similarity=0.327 Sum_probs=0.0
Q ss_pred eEEEEE-cc--CCcEEEEEccC---CCCcc-ccccce-ecCCCeEEEEcCCCCCCCcccCcccEEEEEEEE
Q psy9003 782 CHKAGL-LC--FMHVVCAAGDF---NNWNR-EEFAYK-KLDFGKWELVLPPNPDGSCKLTHLSQVKLVVRN 844 (1276)
Q Consensus 782 a~Falw-AP--~A~~VsLvGDF---N~wd~-~~~pM~-r~~~GVWsl~Ip~~~~G~~~i~hGs~YkYrV~~ 844 (1276)
++|++- .+ ..++|.|+|+- -+|++ ..++|. ..++.+|++++.- +.|. ...|||.+..
T Consensus 433 v~F~v~~~~t~~G~~v~v~G~~~~LG~W~~~~a~~l~~~~~~~~W~~~v~l-p~~~-----~~eyKy~~~~ 497 (527)
T 1gcy_A 433 VSFRCDNGATQMGDSVYAVGNVSQLGNWSPAAALRLTDTSGYPTWKGSIAL-PAGQ-----NEEWKCLIRN 497 (527)
T ss_dssp -----------------------------------------------------------------------
T ss_pred EEEEEecccCCCCCeEEEEcChhHhCCCCcccCccCccCCCCCeEEEEEEe-CCCC-----cEEEEEEEEe
Confidence 467772 22 36778888643 47886 457887 3567899988863 3332 2678888753
|
| >2f2h_A Putative family 31 glucosidase YICI; BETA8alpha8 barrel, hydrolase; HET: MPO XTG; 1.95A {Escherichia coli} SCOP: b.150.1.1 b.30.5.11 b.71.1.4 c.1.8.13 PDB: 1xsj_A 1xsi_A 1xsk_A* 1we5_A* | Back alignment and structure |
|---|
Probab=92.16 E-value=0.11 Score=65.66 Aligned_cols=88 Identities=11% Similarity=0.257 Sum_probs=60.8
Q ss_pred HHHHHHHHHHcCCEEEEEEeccccCCcccCCCcCCC-CCCCcccccCCCCCC---CCCCC--cCCCCCcHHHHHHHHHHH
Q psy9003 1039 LKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFD-GTQACFFHDGPRGTH---PLWDS--RLFNYSEIEVLRFLLSNL 1112 (1276)
Q Consensus 1039 fK~LV~alHk~GI~VILDvV~NHt~~~~~~~~~~f~-g~~~~Yy~~~~~g~~---~~W~g--~~LN~~np~Vr~~Iidsl 1112 (1276)
.++||+++|++|+++++=+-+ +...+.+ .|+ +....||-.+++|.. ..|.+ .-+|+.||++|+++.+.+
T Consensus 328 p~~mv~~Lh~~G~k~~l~i~P-~I~~~s~----~y~e~~~~g~~vk~~~G~~~~~~~w~g~~~~~DftnP~a~~ww~~~~ 402 (773)
T 2f2h_A 328 PEGMIRRLKAKGLKICVWINP-YIGQKSP----VFKELQEKGYLLKRPDGSLWQWDKWQPGLAIYDFTNPDACKWYADKL 402 (773)
T ss_dssp HHHHHHHHHHTTCEEEEEECS-EECTTST----THHHHHHHTCBCBCTTSSBCCBSSSSTTBEEBCTTSHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCEEEEEecC-CcCCCCH----HHHHHHHCCceeECCCCCeeeeeecCCCceeeCCCCHHHHHHHHHHH
Confidence 479999999999999986655 4443321 111 111245554454432 23432 458999999999999999
Q ss_pred HHHHHhCCCcEEccCCcccc
Q psy9003 1113 RWYLDEYQFDGFRFDGVTSM 1132 (1276)
Q Consensus 1113 ~~Wv~eygVDGFRfD~a~~L 1132 (1276)
+.+++ +|||||-+|....+
T Consensus 403 ~~l~d-~Gvd~~w~D~~e~~ 421 (773)
T 2f2h_A 403 KGLVA-MGVDCFKTDFGERI 421 (773)
T ss_dssp HHHHH-TTCCEEEECCCCCC
T ss_pred HHHHh-cCCCEEEccCCCCC
Confidence 99887 79999999975544
|
| >2g3m_A Maltase, alpha-glucosidase; hydrolase, glycoside hydrolase family 31, multidomain protein, (beta/alpha)8 barrel, retaining mechanism; 2.55A {Sulfolobus solfataricus} PDB: 2g3n_A* | Back alignment and structure |
|---|
Probab=92.03 E-value=0.093 Score=65.45 Aligned_cols=86 Identities=20% Similarity=0.243 Sum_probs=60.5
Q ss_pred HHHHHHHHHHcCCEEEEEEeccccCCcccCCCcCCC-CCCCcccccCCCCCC---CCCCC--cCCCCCcHHHHHHHHHHH
Q psy9003 1039 LKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFD-GTQACFFHDGPRGTH---PLWDS--RLFNYSEIEVLRFLLSNL 1112 (1276)
Q Consensus 1039 fK~LV~alHk~GI~VILDvV~NHt~~~~~~~~~~f~-g~~~~Yy~~~~~g~~---~~W~g--~~LN~~np~Vr~~Iidsl 1112 (1276)
+++||+++|++|+++++=+-+ +...+.. ...|+ +.. ||..+++|.. ..|.+ .-+|+.||++|++..+.+
T Consensus 232 p~~mv~~Lh~~G~k~~l~i~P-~I~~~~~--y~~y~e~~~--~fvk~~~G~~~~g~~W~g~~~~~Dftnp~a~~ww~~~~ 306 (693)
T 2g3m_A 232 PKKLIDELHKRNVKLITIVDH-GIRVDQN--YSPFLSGMG--KFCEIESGELFVGKMWPGTTVYPDFFREDTREWWAGLI 306 (693)
T ss_dssp HHHHHHHHHHTTCEEEEEECS-CEECCTT--CHHHHHHTT--SBCEETTSSBCEEEETTEEEECBCTTSHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCEEEEEecC-cccCCCC--cHHHHHHHh--heEECCCCCEEEEEeCCCCeeeeCCCCHHHHHHHHHHH
Confidence 689999999999999997765 4443310 00111 111 5655555542 24553 568999999999999999
Q ss_pred HHHHHhCCCcEEccCCcc
Q psy9003 1113 RWYLDEYQFDGFRFDGVT 1130 (1276)
Q Consensus 1113 ~~Wv~eygVDGFRfD~a~ 1130 (1276)
+.+++ .|||||-+|+-.
T Consensus 307 ~~l~~-~GiDg~w~DmnE 323 (693)
T 2g3m_A 307 SEWLS-QGVDGIWLDMNE 323 (693)
T ss_dssp HHHHT-TTCCEEEECSTT
T ss_pred HHHHh-cCCcEEEEecCC
Confidence 99885 699999999753
|
| >3lpp_A Sucrase-isomaltase; glycoside hydrolase family 31, alpha-glucosidase membrane, disease mutation, disulfide bond, glycoprotein, glycosidase; HET: NAG BMA MAN KTL; 2.15A {Homo sapiens} PDB: 3lpo_A* | Back alignment and structure |
|---|
Probab=91.83 E-value=0.092 Score=67.20 Aligned_cols=91 Identities=15% Similarity=0.292 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHcCCEEEEEEeccccCCcccC---CCcCCC-CCCCcccccCCCC-C---CCCCCC--cCCCCCcHHHHHH
Q psy9003 1038 QLKYLVDECHKAGLYVLLDVVHSHASKNVLD---GLNEFD-GTQACFFHDGPRG-T---HPLWDS--RLFNYSEIEVLRF 1107 (1276)
Q Consensus 1038 EfK~LV~alHk~GI~VILDvV~NHt~~~~~~---~~~~f~-g~~~~Yy~~~~~g-~---~~~W~g--~~LN~~np~Vr~~ 1107 (1276)
++++||+++|++|+++++=+-+. ...+.+. .-..|+ +....||..+++| . -..|.| .-+||.||+++++
T Consensus 374 dp~~mv~~Lh~~G~k~vl~idP~-I~~~~~~~~~~Y~~y~eg~~~g~fvk~~~G~~~~~g~~WpG~~~~~Dftnp~a~~w 452 (898)
T 3lpp_A 374 GLPQFVQDLHDHGQKYVIILDPA-ISIGRRANGTTYATYERGNTQHVWINESDGSTPIIGEVWPGLTVYPDFTNPNCIDW 452 (898)
T ss_dssp THHHHHHHHHHTTCEEEEEECSC-EECSCCTTSCCCHHHHHHHHHTCBCBCTTSSSBCCEEETTEEEECBCTTSHHHHHH
T ss_pred CHHHHHHHHHHCCCEEEEEeCCc-cccCCcccccccHHHHHHHhCCcEEECCCCCceeEEEecCCCccccCCCCHHHHHH
Confidence 78899999999999999976553 3333210 000111 2223556555555 2 123544 4579999999999
Q ss_pred HHHHHHHHHHhCCCcEEccCCc
Q psy9003 1108 LLSNLRWYLDEYQFDGFRFDGV 1129 (1276)
Q Consensus 1108 Iidsl~~Wv~eygVDGFRfD~a 1129 (1276)
..+.++.+.++.|||||-+|+-
T Consensus 453 w~~~~~~~~~~~giDg~W~Dmn 474 (898)
T 3lpp_A 453 WANECSIFHQEVQYDGLWIDMN 474 (898)
T ss_dssp HHHHHHHHHHHSCCSEEEECST
T ss_pred HHHHHHHHHhcCCccEEEEeCC
Confidence 9999999999999999999974
|
| >3l4y_A Maltase-glucoamylase, intestinal; glycoside hydrolase family 31, cell membrane, disulfide bond, glycoprotein, glycosidase, hydrolase, membrane; HET: NR4 NAG; 1.80A {Homo sapiens} PDB: 3l4u_A* 3l4v_A* 3l4w_A* 3l4x_A* 3l4t_A* 3l4z_A* 2qmj_A* 2qly_A* 3ctt_A* | Back alignment and structure |
|---|
Probab=91.45 E-value=0.11 Score=66.46 Aligned_cols=91 Identities=18% Similarity=0.357 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHcCCEEEEEEeccccCCccc--CCCcCCC-CCCCcccccCCCCCC----CCCCC--cCCCCCcHHHHHHH
Q psy9003 1038 QLKYLVDECHKAGLYVLLDVVHSHASKNVL--DGLNEFD-GTQACFFHDGPRGTH----PLWDS--RLFNYSEIEVLRFL 1108 (1276)
Q Consensus 1038 EfK~LV~alHk~GI~VILDvV~NHt~~~~~--~~~~~f~-g~~~~Yy~~~~~g~~----~~W~g--~~LN~~np~Vr~~I 1108 (1276)
++++||+++|++|+++++=+-+. ...+.. ..-..|+ +....||..+++|.. ..|.| .-+||.||+++++.
T Consensus 346 dp~~mv~~Lh~~G~k~v~~idP~-I~~~s~~~~~y~~y~eg~~~g~fvk~~dG~~~~~g~~WpG~~~~pDFtnP~a~~WW 424 (875)
T 3l4y_A 346 GFPEFVNELHNNGQKLVIIVDPA-ISNNSSSSKPYGPYDRGSDMKIWVNSSDGVTPLIGEVWPGQTVFPDYTNPNCAVWW 424 (875)
T ss_dssp THHHHHHHHHHTTCEEEEEECSC-EECCCCSSSCCHHHHHHHHHTCBCBCTTSSSBCCEEETTEEEECBCTTSHHHHHHH
T ss_pred CHHHHHHHHHHCCCEEEEEeCCc-cccCcccccccHHHHHHHHCCeEEECCCCCcceEEEecCCCccCcCCCCHHHHHHH
Confidence 47899999999999999865443 322210 0000111 122345655555532 23554 45799999999999
Q ss_pred HHHHHHHHHhCCCcEEccCCc
Q psy9003 1109 LSNLRWYLDEYQFDGFRFDGV 1129 (1276)
Q Consensus 1109 idsl~~Wv~eygVDGFRfD~a 1129 (1276)
.+.++.+..+.|||||-+|+-
T Consensus 425 ~~~~k~~~~~~gidg~W~Dmn 445 (875)
T 3l4y_A 425 TKEFELFHNQVEFDGIWIDMN 445 (875)
T ss_dssp HHHHHHHHTTSCCSEEEECST
T ss_pred HHHHHHHHhhcCCcEEEEcCC
Confidence 999999998999999999974
|
| >3n12_A Chitinase A, chinctu2; zinc atoms, complex, hydrolase; 1.20A {Bacillus cereus} PDB: 3n11_A 3n15_A* 3n13_A* 3n17_A* 3n18_A* 3n1a_A* | Back alignment and structure |
|---|
Probab=91.21 E-value=1.7 Score=49.32 Aligned_cols=105 Identities=17% Similarity=0.323 Sum_probs=68.6
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCEEEEEEeccccCCcccCCCcCCCCCCCcccccCCCCCCCCCCCcCCCCCcHHHHHHHH
Q psy9003 1030 AGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLL 1109 (1276)
Q Consensus 1030 D~~~Gt~eEfK~LV~alHk~GI~VILDvV~NHt~~~~~~~~~~f~g~~~~Yy~~~~~g~~~~W~g~~LN~~np~Vr~~Ii 1109 (1276)
+|.....+++.+.|++||++|++|++=+ .. | .+ ..-..++..|+.++
T Consensus 52 ~~~~~~~~~~~~~i~~~k~~g~kvllsi-------GG-~------------------------~~-s~~~~~~~~r~~fi 98 (333)
T 3n12_A 52 SPVYGTDADFKSDISYLKSKGKKVVLSI-------GG-Q------------------------NG-VVLLPDNAAKDRFI 98 (333)
T ss_dssp CCSSSCHHHHHHHHHHHHHTTCEEEEEE-------ES-T------------------------TC-CCCCCSHHHHHHHH
T ss_pred cCCccchHHHHHHHHHHHhCCCeEEEEe-------cC-C------------------------CC-ccccCCHHHHHHHH
Confidence 3444567889999999999999999865 10 0 00 01234688999999
Q ss_pred HHHHHHHHhCCCcEEccCCccccccccCCCCCCCCCCCccccCCCCCc-hHHHHHHHHHHHHHhhCCCeE
Q psy9003 1110 SNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDT-DALIYLMVANKFLHDKYPEII 1178 (1276)
Q Consensus 1110 dsl~~Wv~eygVDGFRfD~a~~L~~~d~g~g~~~~~~~~~~~~~~~d~-~a~~Fl~el~~~Vr~~~Pdvi 1178 (1276)
+++..++++|++||+-||--.-.. ..+. ++.+ ...+. .-..|++++++.+++..+...
T Consensus 99 ~si~~~~~~~gfDGiDiDwE~p~~---------~~~~-d~~~-~~~d~~~~~~ll~eLr~~l~~~g~~~~ 157 (333)
T 3n12_A 99 NSIQSLIDKYGFDGIDIDLESGIY---------LNGN-DTNF-KNPTTPQIVNLISAIRTISDHYGPDFL 157 (333)
T ss_dssp HHHHHHHHHHCCSEEEEECCTTCC---------BCTT-CCCT-TSCCCHHHHHHHHHHHHHHHHHCTTCE
T ss_pred HHHHHHHHHcCCCeEEEeccCCCC---------CCCC-CcCC-CcccHHHHHHHHHHHHHHHHhcCCCEE
Confidence 999999999999999999532110 0000 0000 11122 235689999998887766543
|
| >3n9k_A Glucan 1,3-beta-glucosidase; aromatic entranceway/clamp, exoglucanase, glycoside hydrolas protein-carbohydrate interaction; HET: BGC; 1.70A {Candida albicans} SCOP: c.1.8.3 PDB: 2pc8_A* 2pb1_A* 2pbo_A 3o6a_A 2pf0_A 1cz1_A 1eqc_A* 1eqp_A | Back alignment and structure |
|---|
Probab=90.51 E-value=1.5 Score=51.25 Aligned_cols=24 Identities=21% Similarity=0.303 Sum_probs=22.2
Q ss_pred CCHHHHHHHHHHHHHcCCEEEEEE
Q psy9003 1034 GTPEQLKYLVDECHKAGLYVLLDV 1057 (1276)
Q Consensus 1034 Gt~eEfK~LV~alHk~GI~VILDv 1057 (1276)
|..+-|+++|+.|.++||+||||+
T Consensus 110 ~~~~~ld~vV~~a~~~Gl~VILDl 133 (399)
T 3n9k_A 110 GQVQYLEKALGWARKNNIRVWIDL 133 (399)
T ss_dssp CHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred hHHHHHHHHHHHHHHCCCEEEEEe
Confidence 357899999999999999999999
|
| >3poh_A Endo-beta-N-acetylglucosaminidase F1; TIM barrel, structural genomics, joint center for structural genomics, JCSG; 1.55A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=90.07 E-value=2.1 Score=50.88 Aligned_cols=58 Identities=19% Similarity=0.377 Sum_probs=46.5
Q ss_pred HHHHHHHHHcCCEEEEEEeccccCCcccCCCcCCCCCCCcccccCCCCCCCCCCCcCCCCCcHHHHHHHHHHHHHHHHhC
Q psy9003 1040 KYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSNLRWYLDEY 1119 (1276)
Q Consensus 1040 K~LV~alHk~GI~VILDvV~NHt~~~~~~~~~~f~g~~~~Yy~~~~~g~~~~W~g~~LN~~np~Vr~~Iidsl~~Wv~ey 1119 (1276)
.++|+.+|++|++|+|-+==+|.+..+ ..+ .++-|+.+..+++-.+++|
T Consensus 231 ~~~v~~lq~~glKVllSIgGg~~~~gf----------------------------~~l---s~~~r~~Fa~~v~~~v~~y 279 (451)
T 3poh_A 231 ETLLQPLRRRGVKVLLGLLGNHDITGL----------------------------AQL---SEQGAKDFAREVAQYCKAY 279 (451)
T ss_dssp HHHTHHHHHTTCEEEEEEECCSSSCCT----------------------------TCB---CHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCCEEEEEECcCCCCCCc----------------------------ccC---CHHHHHHHHHHHHHHHHHh
Confidence 588999999999999988656543321 012 4678999999999999999
Q ss_pred CCcEEccCC
Q psy9003 1120 QFDGFRFDG 1128 (1276)
Q Consensus 1120 gVDGFRfD~ 1128 (1276)
|+||+-||-
T Consensus 280 glDGIDiDw 288 (451)
T 3poh_A 280 NLDGVNYDD 288 (451)
T ss_dssp TCCEEEEEC
T ss_pred CCCcEEEec
Confidence 999999994
|
| >1cyg_A Cyclodextrin glucanotransferase; glycosyltransferase; 2.50A {Geobacillus stearothermophilus} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 | Back alignment and structure |
|---|
Probab=89.94 E-value=0.14 Score=63.45 Aligned_cols=64 Identities=13% Similarity=0.336 Sum_probs=41.5
Q ss_pred eEEEEEcc---CCcEEEEEccC---CCCccc-cc-ccee---cCCCeEEEEcCCCCCCCcccCcccEEEEEEEEeCCeee
Q psy9003 782 CHKAGLLC---FMHVVCAAGDF---NNWNRE-EF-AYKK---LDFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHGHLL 850 (1276)
Q Consensus 782 a~FalwAP---~A~~VsLvGDF---N~wd~~-~~-pM~r---~~~GVWsl~Ip~~~~G~~~i~hGs~YkYrV~~~dG~~~ 850 (1276)
++|++-+| ..+.|.|+|+- -+|++. .+ +|.. ....+|++.++- +.| .-..|||.+...+|...
T Consensus 582 v~f~v~~~~~~~ge~v~v~G~~~~LG~W~~~~a~~~l~~~~~~~~~~W~~~v~l-p~~-----~~~eyK~v~~~~~~~~~ 655 (680)
T 1cyg_A 582 VRFVVNNATTNLGQNIYIVGNVYELGNWDTSKAIGPMFNQVVYSYPTWYIDVSV-PEG-----KTIEFKFIKKDSQGNVT 655 (680)
T ss_dssp EEEEEESCCCCSSCEEEEEESSGGGBTTCGGGCBCCCBCSSSSCTTCEEEEEEE-ESS-----CEEEEEEEEECTTSCEE
T ss_pred EEEEEeeccCCCCCEEEEEeCcHHhCCCChhhhhhhhccccCCCCCcEEEEEEe-CCC-----CcEEEEEEEEeCCCCeE
Confidence 57888774 36678888653 478864 46 7876 667889888752 222 23578887765455443
Q ss_pred e
Q psy9003 851 D 851 (1276)
Q Consensus 851 ~ 851 (1276)
+
T Consensus 656 W 656 (680)
T 1cyg_A 656 W 656 (680)
T ss_dssp E
T ss_pred e
Confidence 3
|
| >2qlv_B Protein SIP2, protein SPM2; heterotrimer, ATP-binding, carbohydrate metabolism, kinase, membrane, nucleotide-binding, nucleus; 2.60A {Saccharomyces cerevisiae} SCOP: b.1.18.21 d.353.1.1 | Back alignment and structure |
|---|
Probab=89.80 E-value=0.18 Score=55.56 Aligned_cols=50 Identities=18% Similarity=0.317 Sum_probs=36.5
Q ss_pred EEccCCceEEEEeeccCCCcc----e--------EEEEEccCccccceEEEEEecCCC----CCCccccccc
Q psy9003 79 EWAPSAQQLYLTGNVSLTPWS----I--------MEEASLSSIKLIQSIQYILTGVFG----TPEQLKYLVD 134 (1276)
Q Consensus 79 ~wAP~A~~v~l~gdfn~~~w~----m--------~~~~~~~~~~~g~~yky~i~~~~g----rp~~as~~~d 134 (1276)
+|.++|++|+|+|+| ++|+ | +|++.+ .+.+|. |.||.. .|| -|..+ .+.|
T Consensus 9 ~W~~~a~~V~V~GsF--~~W~~~~~m~k~~~~~G~f~~tv-~LppG~-y~YKFi-VDG~w~~Dp~~p-~~~d 74 (252)
T 2qlv_B 9 RWQQGGSKVYVTGSF--TKWRKMIGLIPDSDNNGSFHVKL-RLLPGT-HRFRFI-VDNELRVSDFLP-TATD 74 (252)
T ss_dssp EECSCCSCEEEEEGG--GTTSSCEECEECSSSTTCEEEEE-EECSEE-EEEEEE-ETTEEECCTTSC-EEBC
T ss_pred EEeCCCcEEEEEEEe--CCCcCcccceeccCCCCcEEEEE-ECCCCE-EEEEEE-ECCEEEeCCCCC-EEec
Confidence 699999999999999 5566 5 599988 788885 777433 257 45554 3445
|
| >3bmv_A Cyclomaltodextrin glucanotransferase; glycosidase, thermostable, family 13 glycosyl hydrolas; 1.60A {Thermoanaerobacterium thermosulfurigenorganism_taxid} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 PDB: 3bmw_A* 1ciu_A 1a47_A 1pj9_A* 1cgt_A | Back alignment and structure |
|---|
Probab=89.74 E-value=0.16 Score=62.96 Aligned_cols=56 Identities=16% Similarity=0.328 Sum_probs=35.8
Q ss_pred eEEEEEcc---CCcEEEEEccC---CCCccc-cc-ccee---cCCCeEEEEcCCCCCCCcccCcccEEEEEEE
Q psy9003 782 CHKAGLLC---FMHVVCAAGDF---NNWNRE-EF-AYKK---LDFGKWELVLPPNPDGSCKLTHLSQVKLVVR 843 (1276)
Q Consensus 782 a~FalwAP---~A~~VsLvGDF---N~wd~~-~~-pM~r---~~~GVWsl~Ip~~~~G~~~i~hGs~YkYrV~ 843 (1276)
++|.+-+| ..+.|.|+|+- -+|++. .+ +|.. ....+|.+.++- +.| .-..|||.+.
T Consensus 586 v~f~v~~~~~~~g~~v~v~G~~~~LG~W~~~~a~~~l~~~~~~~~~~W~~~v~l-p~~-----~~~eyK~~~~ 652 (683)
T 3bmv_A 586 VRFVVNNASTVYGENVYLTGNVAELGNWDTSKAIGPMFNQVVYQYPTWYYDVSV-PAG-----TTIQFKFIKK 652 (683)
T ss_dssp EEEEEESCCCCTTCEEEEEESSGGGTTTCGGGCBCSCBCSSSSCTTSEEEEEEE-ETT-----CEEEEEEEEE
T ss_pred EEEEEEeccCCCCCEEEEEeCcHHhCCCChhhhhhhhcccCCCCCCcEEEEEEe-CCC-----CcEEEEEEEE
Confidence 57888774 34678888653 378763 45 7776 567888887752 222 1356777765
|
| >1h4p_A Glucan 1,3-beta-glucosidase I/II; hydrolase, glucan degradation, hydrolyase, glycosidase; HET: NAG BMA MAN NDG; 1.75A {Saccharomyces cerevisiae} SCOP: c.1.8.3 | Back alignment and structure |
|---|
Probab=89.12 E-value=2.5 Score=49.28 Aligned_cols=111 Identities=20% Similarity=0.339 Sum_probs=63.4
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEEeccccCCcccCCCcCCCCCCCcccccCCCCCCCCCCCcCCCCCcHHHHHHHHHHHHH
Q psy9003 1035 TPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSNLRW 1114 (1276)
Q Consensus 1035 t~eEfK~LV~alHk~GI~VILDvV~NHt~~~~~~~~~~f~g~~~~Yy~~~~~g~~~~W~g~~LN~~np~Vr~~Iidsl~~ 1114 (1276)
..+.|+++|+.|.++||+||||+-. .+.... .++ ..+..+ ...+.++..++...+.++.
T Consensus 112 ~l~~ld~vv~~a~~~Gi~VilDlH~---~pG~qn---g~~-------~sG~~~--------~~~w~~~~~~~~~~~~w~~ 170 (408)
T 1h4p_A 112 QESYLDQAIGWARNNSLKVWVDLHG---AAGSQN---GFD-------NSGLRD--------SYKFLEDSNLAVTINVLNY 170 (408)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEEEE---CTTCSS---CCG-------GGSSTT--------CCCTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCEEEEECCC---CCCccC---Ccc-------CCCCCC--------CCCCCCHHHHHHHHHHHHH
Confidence 4688999999999999999999853 222110 011 000000 1224457788888888888
Q ss_pred HHHhCCCcEE-----ccCCccccccccCCCCCCCCCCCccccCCCCCchH-H-HHHHHHHHHHHhh-CCC-eEEEEEcc
Q psy9003 1115 YLDEYQFDGF-----RFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDA-L-IYLMVANKFLHDK-YPE-IITIAEDV 1184 (1276)
Q Consensus 1115 Wv~eygVDGF-----RfD~a~~L~~~d~g~g~~~~~~~~~~~~~~~d~~a-~-~Fl~el~~~Vr~~-~Pd-vilIAE~~ 1184 (1276)
.+++|+=+.+ -++++..- .+...+.+. . .|.+++.+.||+. .|+ .++|.|.+
T Consensus 171 ia~ry~~~~y~~~Vi~~el~NEP------------------~~~~~~~~~~~~~~~~~~~~~IR~~~~~~~~iii~dg~ 231 (408)
T 1h4p_A 171 ILKKYSAEEYLDIVIGIELINEP------------------LGPVLDMDKMKNDYLAPAYEYLRNNIKSDQVIIIHDAF 231 (408)
T ss_dssp HHHHTTSHHHHTTEEEEESCSCC------------------CGGGSCHHHHHHHTHHHHHHHHHHTTCCCCCEEEECTT
T ss_pred HHHHHcccCCCCeEEEEEeccCC------------------CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceEeeecc
Confidence 8887652211 12221110 000112222 3 5778888999998 665 57777754
|
| >3nsx_A Alpha-glucosidase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, acarbose; 1.57A {Ruminococcus obeum} PDB: 3ffj_A 3n04_A 3pha_A* 3nuk_A 3nxm_A* 3m46_A 3mkk_A* 3m6d_A* 3nqq_A* 3poc_A* | Back alignment and structure |
|---|
Probab=88.58 E-value=0.15 Score=63.28 Aligned_cols=89 Identities=16% Similarity=0.332 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHcCCEEEEEEeccccCCcccCCCcCC-CCCCCcccccCCCCCC---CCCCC--cCCCCCcHHHHHHHHHH
Q psy9003 1038 QLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEF-DGTQACFFHDGPRGTH---PLWDS--RLFNYSEIEVLRFLLSN 1111 (1276)
Q Consensus 1038 EfK~LV~alHk~GI~VILDvV~NHt~~~~~~~~~~f-~g~~~~Yy~~~~~g~~---~~W~g--~~LN~~np~Vr~~Iids 1111 (1276)
+.++||+++|++|+++++=+-+. ...+. +...| .+....||..+++|.. ..|.+ .-+|+.||++|++..+.
T Consensus 219 dp~~mv~~Lh~~G~k~v~~idP~-i~~~~--~~~~y~e~~~~g~fvk~~~G~~~~g~~WpG~~~~pDftnp~a~~ww~~~ 295 (666)
T 3nsx_A 219 DFPEFVKEMKDQELRLIPIIDAG-VKVEK--GYEVYEEGVKNNYFCKREDGSDFVAAVWPGDTHFPDMLNPEARKWFGDK 295 (666)
T ss_dssp THHHHHHHHHTTTCEEEEEEESC-EECCT--TCHHHHHHHHTTCBCBCTTSCBCCEEETTEEEECBCTTSHHHHHHHHHT
T ss_pred CHHHHHHHHHHcCceEEeeeccc-eeeec--CchHHhhhcccCccccCCCCCcceEEecCCccCCccccCHHHHHHhhhh
Confidence 57899999999999998644332 11110 00011 1222345655555542 34554 45799999999999998
Q ss_pred HHHHHHhCCCcEEccCCcc
Q psy9003 1112 LRWYLDEYQFDGFRFDGVT 1130 (1276)
Q Consensus 1112 l~~Wv~eygVDGFRfD~a~ 1130 (1276)
++.+.+ .|||||-+|+-.
T Consensus 296 ~~~~~~-~Gidg~W~DmnE 313 (666)
T 3nsx_A 296 YRFLID-QGIEGFWNDMNE 313 (666)
T ss_dssp THHHHT-TTCCEEEEESTT
T ss_pred hhHHHh-ccchhhhhccCC
Confidence 888775 799999999754
|
| >1ur4_A Galactanase; hydrolase, beta-1, glycoside hydrolase, substrate specificity, pectin, GH-A, family 53, plant cell WALL degradation; HET: B2G PGE; 2.2A {Bacillus licheniformis} SCOP: c.1.8.3 PDB: 1r8l_A* 1ur0_A* 2ccr_A* 2j74_A* 2gft_A* | Back alignment and structure |
|---|
Probab=87.79 E-value=2.2 Score=49.98 Aligned_cols=25 Identities=16% Similarity=0.138 Sum_probs=22.5
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEEec
Q psy9003 1035 TPEQLKYLVDECHKAGLYVLLDVVH 1059 (1276)
Q Consensus 1035 t~eEfK~LV~alHk~GI~VILDvV~ 1059 (1276)
+.+.+.+|++.++++||+||+|+-|
T Consensus 87 d~~~~~~~a~~Ak~~GLkVlldfHy 111 (399)
T 1ur4_A 87 DLEKAIQIGKRATANGMKLLADFHY 111 (399)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEEECS
T ss_pred CHHHHHHHHHHHHHCCCEEEEEecc
Confidence 5789999999999999999999844
|
| >4ba0_A Alpha-glucosidase, putative, ADG31B; hydrolase; HET: 5GF PGE ARG; 1.85A {Cellvibrio japonicus} PDB: 4b9z_A* 4b9y_A* | Back alignment and structure |
|---|
Probab=87.73 E-value=0.33 Score=61.70 Aligned_cols=89 Identities=17% Similarity=0.163 Sum_probs=60.5
Q ss_pred CCCCHHHHHHHHHHHHHcCCEEEEEEeccccCCcccCCCcCCC-CCCCcccccCCCCCC---CCCC--CcCCCCCcHHHH
Q psy9003 1032 LFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFD-GTQACFFHDGPRGTH---PLWD--SRLFNYSEIEVL 1105 (1276)
Q Consensus 1032 ~~Gt~eEfK~LV~alHk~GI~VILDvV~NHt~~~~~~~~~~f~-g~~~~Yy~~~~~g~~---~~W~--g~~LN~~np~Vr 1105 (1276)
+|..+ ++||+++|++|+++++=+-+ +...+.. .|+ +....||..+++|.. ..|. ..-+|+.||++|
T Consensus 320 ~FPdp---~~mv~~Lh~~G~k~vl~i~P-~I~~~s~----~y~e~~~~g~~vk~~~G~~~~~~~w~G~~~~~DftnP~ar 391 (817)
T 4ba0_A 320 NFPTP---LDMMADFKQQGVKTVLITEP-FVLTSSK----RWDDAVKAKALAKDPQGQPKAFELYFGNGGIIDVFSKEGS 391 (817)
T ss_dssp TCSCH---HHHHHHHHHTTCEEEEEECS-EEETTST----THHHHHHTTCBCBCTTSSBCCEEETTEEEEEBCTTSHHHH
T ss_pred cCCCH---HHHHHHHHHCCCEEEEEeCC-CccCCcH----HHHHHHhCCEEEECCCCCeEEEEecCCCceeecCCCHHHH
Confidence 45444 79999999999999996654 4433221 111 112345555555432 2343 345899999999
Q ss_pred HHHHHHHHHHHHhCCCcEEccCCc
Q psy9003 1106 RFLLSNLRWYLDEYQFDGFRFDGV 1129 (1276)
Q Consensus 1106 ~~Iidsl~~Wv~eygVDGFRfD~a 1129 (1276)
+++.+.++...+ .|||||-.|+-
T Consensus 392 ~ww~~~~~~l~~-~GvDg~W~Dmn 414 (817)
T 4ba0_A 392 RWFSSIYKDLSK-QGVAGWWGDLG 414 (817)
T ss_dssp HHHHHHHHHHHH-HTCCEEEECCT
T ss_pred HHHHHHHHHHHh-CCCcEEEecCC
Confidence 999999888775 69999999964
|
| >3civ_A Endo-beta-1,4-mannanase; TIM barrel, hydrolase; 1.90A {Alicyclobacillus acidocaldarius} | Back alignment and structure |
|---|
Probab=87.65 E-value=10 Score=43.41 Aligned_cols=26 Identities=19% Similarity=0.327 Sum_probs=24.0
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEEecc
Q psy9003 1035 TPEQLKYLVDECHKAGLYVLLDVVHS 1060 (1276)
Q Consensus 1035 t~eEfK~LV~alHk~GI~VILDvV~N 1060 (1276)
+.+.+.++++.|+++||+|+|+.-+.
T Consensus 95 ~~~~v~~~~~~Ak~~GL~V~l~p~i~ 120 (343)
T 3civ_A 95 SDDEIASMAELAHALGLKVCLKPTVN 120 (343)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEEEEEE
T ss_pred CHHHHHHHHHHHHHCCCEEEEEEEee
Confidence 57899999999999999999998776
|
| >1vjz_A Endoglucanase; TM1752, structural genomics, JCSG, PSI, prote structure initiative, joint center for structural genomics; 2.05A {Thermotoga maritima} SCOP: c.1.8.3 | Back alignment and structure |
|---|
Probab=87.42 E-value=3.2 Score=46.34 Aligned_cols=110 Identities=9% Similarity=0.069 Sum_probs=60.8
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEEeccccCCcccCCCcCCCCCCCcccccCCCCCCCCCCCcCCCCCcHHHHHHHHHHHHH
Q psy9003 1035 TPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSNLRW 1114 (1276)
Q Consensus 1035 t~eEfK~LV~alHk~GI~VILDvV~NHt~~~~~~~~~~f~g~~~~Yy~~~~~g~~~~W~g~~LN~~np~Vr~~Iidsl~~ 1114 (1276)
..+.++++|+.|.++||+||||+- ..+.. .+.+. ..+.... +.+|..++.+.+..+.
T Consensus 75 ~~~~ld~~v~~a~~~Gi~vildlh---~~pg~-----~~~~~--------~~~~~~~-------~~~~~~~~~~~~~~~~ 131 (341)
T 1vjz_A 75 FFEKIDRVIFWGEKYGIHICISLH---RAPGY-----SVNKE--------VEEKTNL-------WKDETAQEAFIHHWSF 131 (341)
T ss_dssp GHHHHHHHHHHHHHHTCEEEEEEE---EETTE-----ESCTT--------SCCSSCT-------TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCEEEEEec---CCCCc-----ccccC--------CCccccc-------cCCHHHHHHHHHHHHH
Confidence 468899999999999999999983 22211 01100 0000111 2356677777777777
Q ss_pred HHHhCCCcE---EccCCccccccccCCCCCCCCCCCccccCCCCC-chHHHHHHHHHHHHHhhCCCeEEEEE
Q psy9003 1115 YLDEYQFDG---FRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVD-TDALIYLMVANKFLHDKYPEIITIAE 1182 (1276)
Q Consensus 1115 Wv~eygVDG---FRfD~a~~L~~~d~g~g~~~~~~~~~~~~~~~d-~~a~~Fl~el~~~Vr~~~PdvilIAE 1182 (1276)
.+++|+=+. .-++++... .... ....+ ..-..+.+++.++||+..|+..++-+
T Consensus 132 ia~ry~~~~~~v~~~el~NEP----------~~~~-----~~~~~~~~~~~~~~~~~~~IR~~~~~~~I~v~ 188 (341)
T 1vjz_A 132 IARRYKGISSTHLSFNLINEP----------PFPD-----PQIMSVEDHNSLIKRTITEIRKIDPERLIIID 188 (341)
T ss_dssp HHHHHTTSCTTTEEEECSSCC----------CCCB-----TTTBCHHHHHHHHHHHHHHHHHHCTTCCEEEE
T ss_pred HHHHHhcCCCCeEEEEeccCC----------CCCC-----cccccHHHHHHHHHHHHHHHHhhCCCcEEEEc
Confidence 777764210 111211110 0000 00001 12345788899999999999755544
|
| >4axn_A Chitinase C1; hydrolase; 1.68A {Serratia marcescens} | Back alignment and structure |
|---|
Probab=86.83 E-value=2.8 Score=47.19 Aligned_cols=64 Identities=17% Similarity=0.174 Sum_probs=45.1
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEEEeccccCCcccCCCcCCCCCCCcccccCCCCCCCCCCCcCCCCCcHHHHHHHHH
Q psy9003 1031 GLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLS 1110 (1276)
Q Consensus 1031 ~~~Gt~eEfK~LV~alHk~GI~VILDvV~NHt~~~~~~~~~~f~g~~~~Yy~~~~~g~~~~W~g~~LN~~np~Vr~~Iid 1110 (1276)
+.-.+..+|++-|++||++|++|+|=+ .+ | .+ .+ .++. .-|+.+++
T Consensus 77 ~~~~~~~~~~~~i~~~~~~g~kvllSi-------GG-~-----~~---~~---------------~~~~---~~r~~F~~ 122 (328)
T 4axn_A 77 PYNLSDTEFRRQVGVLNSQGRAVLISL-------GG-A-----DA---HI---------------ELKT---GDEDKLKD 122 (328)
T ss_dssp CSSSCHHHHHHHHHHHHHTTCEEEEEE-------EE-T-----TC---CC---------------CCCT---TCHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHCCCEEEEEe-------CC-C-----CC---Cc---------------cCCh---HHHHHHHH
Confidence 334567899999999999999999865 10 0 00 00 1111 22556778
Q ss_pred HHHHHHHhCCCcEEccCC
Q psy9003 1111 NLRWYLDEYQFDGFRFDG 1128 (1276)
Q Consensus 1111 sl~~Wv~eygVDGFRfD~ 1128 (1276)
++...+++|++||+-||-
T Consensus 123 s~~~~l~~ygfDGiDiDw 140 (328)
T 4axn_A 123 EIIRLVEVYGFDGLDIDL 140 (328)
T ss_dssp HHHHHHHHHCCCEEEEEE
T ss_pred HHHHHHHHhCCCeEEEec
Confidence 888889999999999995
|
| >2z0b_A GDE5, KIAA1434, putative glycerophosphodiester phosphodiesterase; CBM20 domain, starch-binding, hydrolase, STR genomics, NPPSFA; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=85.62 E-value=1.4 Score=43.85 Aligned_cols=56 Identities=16% Similarity=0.176 Sum_probs=42.8
Q ss_pred ceEEEEEccC--CcEEEEEcc---CCCCccc-cccceec----CCCeEEEEcCCCCCCCcccCcccEEEEEE
Q psy9003 781 ECHKAGLLCF--MHVVCAAGD---FNNWNRE-EFAYKKL----DFGKWELVLPPNPDGSCKLTHLSQVKLVV 842 (1276)
Q Consensus 781 ~a~FalwAP~--A~~VsLvGD---FN~wd~~-~~pM~r~----~~GVWsl~Ip~~~~G~~~i~hGs~YkYrV 842 (1276)
.++|++-+|+ .+.|.|+|+ +.+|++. .++|... ..++|.+.++- +.+ .-..|||.+
T Consensus 10 ~V~F~v~~~~~~ge~v~vvGs~~~LG~W~p~~av~L~~~~~~~~~~~W~~~v~l-p~~-----~~~eYKyvi 75 (131)
T 2z0b_A 10 QVAFEIRGTLLPGEVFAICGSCDALGNWNPQNAVALLPENDTGESMLWKATIVL-SRG-----VSVQYRYFK 75 (131)
T ss_dssp EEEEEEECCCCTTCEEEEEESSGGGTTTCGGGCEECEECCTTCCSSEEEEEEEE-CTT-----CCEEEEEEE
T ss_pred EEEEEEeeecCCCCEEEEEeCCCcCCCCCccccccccccccCCCCCeEEEEEEc-CCC-----CcEEEEEEE
Confidence 4689999976 478999988 8899974 6799886 78999998862 222 135788877
|
| >1ac0_A Glucoamylase; hydrolase, starch binding domain; HET: GLC BGC GLO; NMR {Aspergillus niger} SCOP: b.3.1.1 PDB: 1acz_A* 1kul_A 1kum_A | Back alignment and structure |
|---|
Probab=85.43 E-value=0.74 Score=43.95 Aligned_cols=69 Identities=12% Similarity=0.139 Sum_probs=47.1
Q ss_pred ceEEEEEccC--CcEEEEEcc---CCCCccc-cccceec----CCCeEEEEcCCCCCCCcccCcccEEEEEEEEeCCeee
Q psy9003 781 ECHKAGLLCF--MHVVCAAGD---FNNWNRE-EFAYKKL----DFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHGHLL 850 (1276)
Q Consensus 781 ~a~FalwAP~--A~~VsLvGD---FN~wd~~-~~pM~r~----~~GVWsl~Ip~~~~G~~~i~hGs~YkYrV~~~dG~~~ 850 (1276)
.++|.+-+|+ .+.|.|+|+ +.+|++. .++|... +++.|++.+.- +.|. ...|||.+...+|...
T Consensus 8 ~V~F~v~~~t~~Ge~v~vvGs~~~LG~W~~~~a~~l~~~~~~~~~~~W~~~v~l-p~~~-----~~eYKy~v~~~~g~~~ 81 (108)
T 1ac0_A 8 AVTFDLTATTTYGENIYLVGSISQLGDWETSDGIALSADKYTSSDPLWYVTVTL-PAGE-----SFEYKFIRIESDDSVE 81 (108)
T ss_dssp CEEEEEECCCCSSCCEECCCSSSTTCSSSGGGSCCBBCSSSSSSCSSCEEEECC-CSSS-----CEECCCEECCSSSCCC
T ss_pred EEEEEEeeECCCCCEEEEEeCcHHHCCCCHHHCccccccccCCcCCeEEEEEEe-CCCC-----eEEEEEEEEcCCCCEE
Confidence 3689998875 488999986 5689974 6899875 46999999973 3332 3678888754445433
Q ss_pred eecCC
Q psy9003 851 DRLSP 855 (1276)
Q Consensus 851 ~~~DP 855 (1276)
+-.+|
T Consensus 82 WE~g~ 86 (108)
T 1ac0_A 82 WESDP 86 (108)
T ss_dssp CCCSS
T ss_pred eccCC
Confidence 44444
|
| >2aam_A Hypothetical protein TM1410; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; HET: MSE UNL; 2.20A {Thermotoga maritima} SCOP: c.1.8.15 | Back alignment and structure |
|---|
Probab=85.16 E-value=1.4 Score=49.83 Aligned_cols=119 Identities=15% Similarity=0.306 Sum_probs=74.3
Q ss_pred HHHHHHHcCCEEEEEEeccccCCcccCCCcCCCCCCCccccc----CCC----CCCCCCC-CcCCCCCcHHHHHHHHHHH
Q psy9003 1042 LVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHD----GPR----GTHPLWD-SRLFNYSEIEVLRFLLSNL 1112 (1276)
Q Consensus 1042 LV~alHk~GI~VILDvV~NHt~~~~~~~~~~f~g~~~~Yy~~----~~~----g~~~~W~-g~~LN~~np~Vr~~Iidsl 1112 (1276)
-|+.+|+.|.+||-=+-. +.... | ..||.. .+. +..++|. ..-+|..+|.+|++|.+-+
T Consensus 61 ~i~~L~~~G~~viaYlSv---Ge~E~-----~----R~y~~~~w~~~~~~~lg~~n~~W~ge~~vDi~~~~w~~i~~~rl 128 (309)
T 2aam_A 61 EIKIMVDAGVVPVAYVNI---GQAED-----Y----RFYWKESWYTNTPEWLGEEDPAWPGNYFVKYWYNEWKEIVFSYL 128 (309)
T ss_dssp HHHHHHHTTCEEEEEEES---SEEET-----T----STTCCTHHHHSCCTTEEEEETTEEEEEEECTTSHHHHHHHHHHH
T ss_pred HHHHHHhCCCEEEEEEec---ccccc-----c----chhhhhccccCCHHHhCccCCCCCCceEEecCCHHHHHHHHHHH
Confidence 345789999988654432 22111 1 123322 221 1257787 5678999999999999988
Q ss_pred HHHHHhCCCcEEccCCccccccccCCCCCCCCCCCccccCCCCCchHHHHHHHHHHHHHhhCCCeEEEEE
Q psy9003 1113 RWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAE 1182 (1276)
Q Consensus 1113 ~~Wv~eygVDGFRfD~a~~L~~~d~g~g~~~~~~~~~~~~~~~d~~a~~Fl~el~~~Vr~~~PdvilIAE 1182 (1276)
..-++ -|+|||=+|.+......... .++.. .....+.+.|++.|.+.+|+.+|+..+|.-
T Consensus 129 ~~~~~-kG~DGvflDnvD~y~~~~~~--~g~~~-------~~~~~~~~~~i~~La~~ar~~~P~~~ii~n 188 (309)
T 2aam_A 129 DRVID-QGFKGIYLDRIDSFEYWAQE--GVISR-------RSAARKMINFVLEIAEYVRERKPDMLIIPQ 188 (309)
T ss_dssp HHHHH-TTCSEEEEECTTHHHHHHHH--TSSCH-------HHHHHHHHHHHHHHHHHHHHHCTTCEEEEB
T ss_pred HHHHH-cCCCeEeecccchhhhcccc--CCcch-------hhhHHHHHHHHHHHHHHHHhhCCCcEEEEe
Confidence 87666 69999999987654211000 00000 000134578999999999999999988743
|
| >1ceo_A Cellulase CELC; glycosyl hydrolase, family A/5 of glycosyl hydrolases, cellulose degradation; 1.90A {Clostridium thermocellum} SCOP: c.1.8.3 PDB: 1cen_A 1cec_A | Back alignment and structure |
|---|
Probab=84.42 E-value=6.3 Score=43.88 Aligned_cols=104 Identities=13% Similarity=0.156 Sum_probs=59.1
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEEeccccCCcccCCCcCCCCCCCcccccCCCCCCCCCCCcCCCCCcHHHHHHHHHHHHH
Q psy9003 1035 TPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSNLRW 1114 (1276)
Q Consensus 1035 t~eEfK~LV~alHk~GI~VILDvV~NHt~~~~~~~~~~f~g~~~~Yy~~~~~g~~~~W~g~~LN~~np~Vr~~Iidsl~~ 1114 (1276)
..+.++++|+.|.++||+||+|+-.. ... .+.+. + .... +.+|..++...+..+.
T Consensus 67 ~~~~l~~~v~~a~~~Gi~vildlh~~---~g~-----~~~~~-------~---~~~~-------~~~~~~~~~~~~~~~~ 121 (343)
T 1ceo_A 67 GLSYIDRCLEWCKKYNLGLVLDMHHA---PGY-----RFQDF-------K---TSTL-------FEDPNQQKRFVDIWRF 121 (343)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEEEEC---CC-----------------------CCT-------TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCEEEEEecCC---Ccc-----ccCCC-------C---cccC-------cCCHHHHHHHHHHHHH
Confidence 35789999999999999999998432 111 11110 0 0011 2356777777788888
Q ss_pred HHHhCCCcE--EccCCccccccccCCCCCCCCCCCccccCCCCCchHHHHHHHHHHHHHhhCCCeEEEEE
Q psy9003 1115 YLDEYQFDG--FRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAE 1182 (1276)
Q Consensus 1115 Wv~eygVDG--FRfD~a~~L~~~d~g~g~~~~~~~~~~~~~~~d~~a~~Fl~el~~~Vr~~~PdvilIAE 1182 (1276)
.+++|+=+. .-++++.. .. +. ....-..+.+.+.++||+..|+..++-+
T Consensus 122 ia~~~~~~~~v~~~el~NE----------P~--------~~-~~~~~~~~~~~~~~~IR~~~p~~~i~v~ 172 (343)
T 1ceo_A 122 LAKRYINEREHIAFELLNQ----------VV--------EP-DSTRWNKLMLECIKAIREIDSTMWLYIG 172 (343)
T ss_dssp HHHHTTTCCSSEEEECCSC----------CC--------CS-SSHHHHHHHHHHHHHHHHHCSSCCEEEE
T ss_pred HHHHhcCCCCeEEEEeccC----------CC--------Cc-chHHHHHHHHHHHHHHHhhCCCCEEEEe
Confidence 888764210 01111110 00 00 0112235677888999999998655554
|
| >2ebn_A Endo-beta-N-acetylglucosaminidase F1; hydrolase(glucosidase); 2.00A {Elizabethkingia meningoseptica} SCOP: c.1.8.5 | Back alignment and structure |
|---|
Probab=83.35 E-value=7.4 Score=43.71 Aligned_cols=60 Identities=20% Similarity=0.336 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHcCCEEEEEEeccccCCcccCCCcCCCCCCCcccccCCCCCCCCCCCcCCCCCcHHHHHHHHHHHHHHHH
Q psy9003 1038 QLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSNLRWYLD 1117 (1276)
Q Consensus 1038 EfK~LV~alHk~GI~VILDvV~NHt~~~~~~~~~~f~g~~~~Yy~~~~~g~~~~W~g~~LN~~np~Vr~~Iidsl~~Wv~ 1117 (1276)
.+.+.|+.|+++|++|+|=+=-+|.+... ..+ . ++-|+-+.+++.-+++
T Consensus 72 ~~~~~i~~lq~~glKVllSIGG~~~~~g~----------------------------~~l--~-~~~r~~Fa~sv~~~v~ 120 (289)
T 2ebn_A 72 NRAKYLKPLQDKGIKVILSILGNHDRSGI----------------------------ANL--S-TARAKAFAQELKNTCD 120 (289)
T ss_dssp THHHHTHHHHHTTCEEEEEEECCSSSCCT----------------------------TCB--C-HHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHhCCCEEEEEeCCCCCCCCe----------------------------ecC--C-HHHHHHHHHHHHHHHH
Confidence 35678888999999999988555432210 012 1 5778899999999999
Q ss_pred hCCCcEEccCC
Q psy9003 1118 EYQFDGFRFDG 1128 (1276)
Q Consensus 1118 eygVDGFRfD~ 1128 (1276)
+||+||+-||-
T Consensus 121 ~ygfDGiDiDw 131 (289)
T 2ebn_A 121 LYNLDGVFFDD 131 (289)
T ss_dssp HHTCCEEEEEC
T ss_pred HhCCCcEEEee
Confidence 99999999995
|
| >3pzg_A Mannan endo-1,4-beta-mannosidase. glycosyl hydrol 5; alpha/beta barrel, glycosyl hydrolase, sugar binding, secret hydrolase; 1.40A {Thermotoga petrophila} PDB: 3pz9_A 3pzi_A* 3pzm_A 3pzn_A* 3pzo_A* 3pzq_A* | Back alignment and structure |
|---|
Probab=80.52 E-value=6.4 Score=45.78 Aligned_cols=119 Identities=9% Similarity=0.226 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHHcCCEEEEEEeccccCCcccCCCcCCCCCCCcccccCCCCCCCCCCCcCCCCCcHHHHHHHHHHHHHH
Q psy9003 1036 PEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSNLRWY 1115 (1276)
Q Consensus 1036 ~eEfK~LV~alHk~GI~VILDvV~NHt~~~~~~~~~~f~g~~~~Yy~~~~~g~~~~W~g~~LN~~np~Vr~~Iidsl~~W 1115 (1276)
.+.|.++|+.|+++||+||||+.-+.- .+.|. +.|-.... + .....=+.+|.+++...+.++..
T Consensus 99 ~~~LD~~i~~A~k~GI~viL~l~~~w~---------~~GG~-~~y~~~~g-~-----~~~~~f~~dp~~~~~~~~~~~~l 162 (383)
T 3pzg_A 99 FERLDYTIAKAKELGIKLIIVLVNNWD---------DFGGM-NQYVRWFG-G-----THHDDFYRDERIKEEYKKYVSFL 162 (383)
T ss_dssp HHHHHHHHHHHHHHTCEEEEECCBSSS---------TTSHH-HHHHHHTT-C-----CSTTHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCEEEEEcccccc---------ccCCc-cchhhhcC-C-----CccccccCCHHHHHHHHHHHHHH
Confidence 688999999999999999999852210 01111 11100000 0 00011145788999999999998
Q ss_pred HHhC-CCcEEccCCccccccccCCCCCCCCCCCccccCCC--CC-chHHHHHHHHHHHHHhhCCCeEEE
Q psy9003 1116 LDEY-QFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLN--VD-TDALIYLMVANKFLHDKYPEIITI 1180 (1276)
Q Consensus 1116 v~ey-gVDGFRfD~a~~L~~~d~g~g~~~~~~~~~~~~~~--~d-~~a~~Fl~el~~~Vr~~~PdvilI 1180 (1276)
+++. -+-|.++---+.+.- |. ..+..+.. .. .....+++++.+.||+..|...++
T Consensus 163 ~~r~N~~tG~~y~~~p~I~~--------w~--l~NEp~~~~~~~~~~~~~w~~~~~~~IR~~Dp~~lVt 221 (383)
T 3pzg_A 163 INHVNVYTGVPYREEPTIMA--------WE--LANELRCETDKSGNTLVEWVKEMSSYIKSLDPNHLVA 221 (383)
T ss_dssp HTCBCTTTCCBGGGCTTEEE--------EE--SCBTCCCTTCTTSHHHHHHHHHHHHHHHHHCSSSEEE
T ss_pred HhhhccccCcccCCCCcEEE--------EE--ecCCCCcccCccHHHHHHHHHHHHHHHHhhCCCceEE
Confidence 8861 011111100011100 00 11111100 11 223467889999999999986543
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 1276 | ||||
| d1m7xa3 | 396 | c.1.8.1 (A:227-622) 1,4-alpha-glucan branching enz | 1e-17 | |
| d1bf2a3 | 475 | c.1.8.1 (A:163-637) Isoamylase, central domain {Ps | 4e-12 | |
| d1m7xa1 | 110 | b.1.18.2 (A:117-226) 1,4-alpha-glucan branching en | 4e-09 | |
| d1gcya2 | 357 | c.1.8.1 (A:1-357) G4-amylase (1,4-alpha-D-glucan m | 7e-09 | |
| d1jaea2 | 378 | c.1.8.1 (A:1-378) Animal alpha-amylase {Yellow mea | 2e-08 | |
| d1eh9a3 | 400 | c.1.8.1 (A:91-490) Glycosyltrehalose trehalohydrol | 2e-08 | |
| d1g94a2 | 354 | c.1.8.1 (A:1-354) Bacterial alpha-amylase {Pseudoa | 1e-07 | |
| d1j0ha3 | 382 | c.1.8.1 (A:124-505) Neopullulanase, central domain | 2e-07 | |
| d2d3na2 | 394 | c.1.8.1 (A:5-398) Bacterial alpha-amylase {Bacillu | 2e-07 | |
| d1g5aa2 | 554 | c.1.8.1 (A:1-554) Amylosucrase {Neisseria polysacc | 4e-07 | |
| d1m53a2 | 478 | c.1.8.1 (A:43-520) Isomaltulose synthase PalI {Kle | 1e-06 | |
| d1iv8a2 | 653 | c.1.8.1 (A:1-653) Maltooligosyl trehalose synthase | 1e-06 | |
| d1mxga2 | 361 | c.1.8.1 (A:1-361) Bacterial alpha-amylase {Archaeo | 7e-06 | |
| d1ht6a2 | 347 | c.1.8.1 (A:1-347) Plant alpha-amylase {Barley (Hor | 8e-06 | |
| d1uoka2 | 479 | c.1.8.1 (A:1-479) Oligo-1,6, glucosidase {Bacillus | 1e-05 | |
| d1hvxa2 | 393 | c.1.8.1 (A:1-393) Bacterial alpha-amylase {Bacillu | 2e-05 | |
| d1ud2a2 | 390 | c.1.8.1 (A:1-390) Bacterial alpha-amylase {Bacillu | 2e-05 | |
| d1e43a2 | 393 | c.1.8.1 (A:1-393) Bacterial alpha-amylase {Chimera | 2e-05 | |
| d1hx0a2 | 403 | c.1.8.1 (A:1-403) Animal alpha-amylase {Pig (Sus s | 3e-05 | |
| d1gjwa2 | 572 | c.1.8.1 (A:1-572) Maltosyltransferase {Thermotoga | 4e-05 | |
| d1ua7a2 | 344 | c.1.8.1 (A:4-347) Bacterial alpha-amylase {Bacillu | 4e-05 | |
| d1lwha2 | 391 | c.1.8.1 (A:1-391) 4-alpha-glucanotransferase {Ther | 0.002 | |
| d1wzaa2 | 409 | c.1.8.1 (A:28-436) Bacterial alpha-amylase {Haloth | 0.002 | |
| d2bhua3 | 420 | c.1.8.1 (A:111-530) Glycosyltrehalose trehalohydro | 0.003 | |
| d1wzla3 | 382 | c.1.8.1 (A:121-502) Maltogenic amylase, central do | 0.004 |
| >d1m7xa3 c.1.8.1 (A:227-622) 1,4-alpha-glucan branching enzyme, central domain {Escherichia coli [TaxId: 562]} Length = 396 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: 1,4-alpha-glucan branching enzyme, central domain species: Escherichia coli [TaxId: 562]
Score = 84.3 bits (207), Expect = 1e-17
Identities = 55/173 (31%), Positives = 85/173 (49%), Gaps = 3/173 (1%)
Query: 1033 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLW 1092
FGT + +Y +D H AGL V+LD V H + L EFDGT D G H W
Sbjct: 86 FGTRDDFRYFIDAAHAAGLNVILDWVPGHFPTDD-FALAEFDGTNLYEHSDPREGYHQDW 144
Query: 1093 DSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFG 1152
++ ++NY EV FL+ N ++++ + D R D V SM+Y ++ FG
Sbjct: 145 NTLIYNYGRREVSNFLVGNALYWIERFGIDALRVDAVASMIYRDY--SRKEGEWIPNEFG 202
Query: 1153 LNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDYRL 1205
+ +A+ +L N+ L ++ +T+AE+ + P RP GG GF Y+
Sbjct: 203 GRENLEAIEFLRNTNRILGEQVSGAVTMAEESTDFPGVSRPQDMGGLGFWYKW 255
|
| >d1bf2a3 c.1.8.1 (A:163-637) Isoamylase, central domain {Pseudomonas amyloderamosa [TaxId: 32043]} Length = 475 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Isoamylase, central domain species: Pseudomonas amyloderamosa [TaxId: 32043]
Score = 67.8 bits (164), Expect = 4e-12
Identities = 26/164 (15%), Positives = 57/164 (34%), Gaps = 14/164 (8%)
Query: 1033 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASK--------NVLDGLNEFDGTQACFFHDG 1084
G + + +V H AG+ V +DVV++H ++ + + G +++
Sbjct: 107 GGPTAEFQAMVQAFHNAGIKVYMDVVYNHTAEGGTWTSSDPTTATIYSWRGLDNATYYEL 166
Query: 1085 PRGTHPLWDSRL----FNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCG 1140
G +D+ FN ++ +L ++ + DGFRFD + +
Sbjct: 167 TSGNQYFYDNTGIGANFNTYNTVAQNLIVDSLAYWANTMGVDGFRFDLASVLGNSCL--N 224
Query: 1141 EGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAEDV 1184
++ + DA + N+ L + +
Sbjct: 225 GAYTASAPNCPNGGYNFDAADSNVAINRILREFTVRPAAGGSGL 268
|
| >d1m7xa1 b.1.18.2 (A:117-226) 1,4-alpha-glucan branching enzyme, N-terminal domain N {Escherichia coli [TaxId: 562]} Length = 110 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: E set domains family: E-set domains of sugar-utilizing enzymes domain: 1,4-alpha-glucan branching enzyme, N-terminal domain N species: Escherichia coli [TaxId: 562]
Score = 53.0 bits (127), Expect = 4e-09
Identities = 18/77 (23%), Positives = 30/77 (38%), Gaps = 11/77 (14%)
Query: 789 CFMHVVCAAGDFNNWNREEFAYKKL-DFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHG 847
+ VV G FN W+ + + G WEL +P +G K + + +G
Sbjct: 32 RRVSVV---GQFNYWDGRRHPMRLRKESGIWELFIPGAHNGQL-------YKYEMIDANG 81
Query: 848 HLLDRLSPWATYVTEPP 864
+L + P+A P
Sbjct: 82 NLRLKSDPYAFEAQMRP 98
|
| >d1gcya2 c.1.8.1 (A:1-357) G4-amylase (1,4-alpha-D-glucan maltotetrahydrolase) {Pseudomonas stutzeri [TaxId: 316]} Length = 357 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: G4-amylase (1,4-alpha-D-glucan maltotetrahydrolase) species: Pseudomonas stutzeri [TaxId: 316]
Score = 56.8 bits (136), Expect = 7e-09
Identities = 30/171 (17%), Positives = 48/171 (28%), Gaps = 12/171 (7%)
Query: 1033 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLW 1092
+G+ QL+ AG+ VL DVV +H ++ D Q + +D +
Sbjct: 89 YGSDAQLRQAASALGGAGVKVLYDVVPNHMNRGYPDKEINLPAGQGFWRNDCADPGNYPN 148
Query: 1093 DSRL----------FNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEG 1142
D N +V +Y GFRFD V
Sbjct: 149 DCDDGDRFIGGDADLNTGHPQVYGMFRDEFTNLRSQYGAGGFRFDFVRGYAP--ERVNSW 206
Query: 1143 FSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRP 1193
+ D F + + + +II D + P
Sbjct: 207 MTDSADNSFCVGELWKGPSEYPNWDWRNTASWQQIIKDWSDRAKCPVFDFA 257
|
| >d1jaea2 c.1.8.1 (A:1-378) Animal alpha-amylase {Yellow mealworm (Tenebrio molitor), larva [TaxId: 7067]} Length = 378 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Animal alpha-amylase species: Yellow mealworm (Tenebrio molitor), larva [TaxId: 7067]
Score = 55.3 bits (132), Expect = 2e-08
Identities = 24/154 (15%), Positives = 40/154 (25%), Gaps = 22/154 (14%)
Query: 1033 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKN-------------------VLDGLNEF 1073
G + C+ AG+ + +D V +H + V G +F
Sbjct: 71 SGDESAFTDMTRRCNDAGVRIYVDAVINHMTGMNGVGTSGSSADHDGMNYPAVPYGSGDF 130
Query: 1074 DGTQACFFHDGPRGTHPLWDSRL--FNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTS 1131
+ L N V L+ + +D GFR D
Sbjct: 131 HSPCEVNNYQDADNVRNCELVGLRDLNQGSDYVRGVLIDYMNHMID-LGVAGFRVDAAKH 189
Query: 1132 MLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMV 1165
M + + + +G IY V
Sbjct: 190 MSPGDLSVIFSGLKNLNTDYGFADGARPFIYQEV 223
|
| >d1eh9a3 c.1.8.1 (A:91-490) Glycosyltrehalose trehalohydrolase, central domain {Archaeon Sulfolobus solfataricus, km1 [TaxId: 2287]} Length = 400 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Glycosyltrehalose trehalohydrolase, central domain species: Archaeon Sulfolobus solfataricus, km1 [TaxId: 2287]
Score = 55.4 bits (132), Expect = 2e-08
Identities = 32/107 (29%), Positives = 51/107 (47%), Gaps = 6/107 (5%)
Query: 1033 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLW 1092
+G PE + LVDE HK GL V+LDVV++H + + P G +
Sbjct: 74 YGGPEGFRKLVDEAHKKGLGVILDVVYNHVGPEGNYMVKLGP--YFSQKYKTPWGLTFNF 131
Query: 1093 DSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGC 1139
D + V +F+L N+ +++ EY DGFR D V +++ +
Sbjct: 132 DDAESDE----VRKFILENVEYWIKEYNVDGFRLDAVHAIIDTSPKH 174
|
| >d1g94a2 c.1.8.1 (A:1-354) Bacterial alpha-amylase {Pseudoalteromonas haloplanktis (Alteromonas haloplanktis) [TaxId: 228]} Length = 354 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Bacterial alpha-amylase species: Pseudoalteromonas haloplanktis (Alteromonas haloplanktis) [TaxId: 228]
Score = 53.3 bits (127), Expect = 1e-07
Identities = 31/219 (14%), Positives = 60/219 (27%), Gaps = 39/219 (17%)
Query: 1033 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNV-------LDGLNEFDGTQACFFHDGP 1085
G Q +V+ C AG+ + +D + +H + G F FH+
Sbjct: 61 GGNRAQFIDMVNRCSAAGVDIYVDTLINHMAAGSGTGTAGNSFGNKSFPIYSPQDFHESC 120
Query: 1086 RGTHPLW-------------DSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSM 1132
+ + + + V + + + GFRFD +
Sbjct: 121 TINNSDYGNDRYRVQNCELVGLADLDTASNYVQNTIAAYINDLQA-IGVKGFRFDASKHV 179
Query: 1133 -----------------LYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYP 1175
++ G + EY + T+ + N F +
Sbjct: 180 AASDIQSLMAKVNGSPVVFQEVIDQGGEAVGASEYLSTGLVTEFKYSTELGNTFRNGSLA 239
Query: 1176 EIITIAEDVSGMPASCRPVTEGGTGFDYRLVSLEGSALS 1214
+ E MP S V + R G+ ++
Sbjct: 240 WLSNFGEGWGFMP-SSSAVVFVDNHDNQRGHGGAGNVIT 277
|
| >d1j0ha3 c.1.8.1 (A:124-505) Neopullulanase, central domain {Bacillus stearothermophilus [TaxId: 1422]} Length = 382 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Neopullulanase, central domain species: Bacillus stearothermophilus [TaxId: 1422]
Score = 52.4 bits (124), Expect = 2e-07
Identities = 33/148 (22%), Positives = 54/148 (36%), Gaps = 17/148 (11%)
Query: 1033 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVL---------------DGLNEFDGTQ 1077
FG E LK L+D CH+ G+ V+LD V +H D + +
Sbjct: 96 FGDKETLKTLIDRCHEKGIRVMLDAVFNHCGYEFAPFQDVWKNGESSKYKDWFHIHEFPL 155
Query: 1078 ACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSML--YH 1135
+ N + EV R+LL +++ E+ DG+R D + +
Sbjct: 156 QTEPRPNYDTFAFVPQMPKLNTANPEVKRYLLDVATYWIREFDIDGWRLDVANEIDHEFW 215
Query: 1136 NHGCGEGFSGHYDEYFGLNVDTDALIYL 1163
E + D Y + DA+ +L
Sbjct: 216 REFRQEVKALKPDVYILGEIWHDAMPWL 243
|
| >d2d3na2 c.1.8.1 (A:5-398) Bacterial alpha-amylase {Bacillus sp. 707 [TaxId: 1416]} Length = 394 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Bacterial alpha-amylase species: Bacillus sp. 707 [TaxId: 1416]
Score = 52.3 bits (124), Expect = 2e-07
Identities = 26/162 (16%), Positives = 54/162 (33%), Gaps = 10/162 (6%)
Query: 1033 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLW 1092
+GT QL+ V G+ V DVV +H G + + +A + R
Sbjct: 75 YGTRSQLQAAVTSLKNNGIQVYGDVVMNHKG-----GADATEMVRAVEVNPNNRNQEVTG 129
Query: 1093 DSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFG 1152
+ + ++ RF +++ + FDGV + + +
Sbjct: 130 EYTIEAWT-----RFDFPGRGNTHSSFKWRWYHFDGVDWDQSRRLNNRIYKFRGHGKAWD 184
Query: 1153 LNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPV 1194
VDT+ Y + + +PE++ + + +
Sbjct: 185 WEVDTENGNYDYLMYADIDMDHPEVVNELRNWGVWYTNTLGL 226
|
| >d1g5aa2 c.1.8.1 (A:1-554) Amylosucrase {Neisseria polysaccharea [TaxId: 489]} Length = 554 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Amylosucrase species: Neisseria polysaccharea [TaxId: 489]
Score = 51.9 bits (123), Expect = 4e-07
Identities = 23/169 (13%), Positives = 46/169 (27%), Gaps = 14/169 (8%)
Query: 1033 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQ--ACFFHDGPRGTHP 1090
GT L+ ++ H+AG+ ++D + +H S G F++ P P
Sbjct: 159 LGTIGDLREVIAALHEAGISAVVDFIFNHTSNEHEWAQRCAAGDPLFDNFYYIFPDRRMP 218
Query: 1091 LWDSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEY 1150
R F + + + N+ F E
Sbjct: 219 DQYDRTLREI------FPDQHPGGFSQLEDGRWVWTTFNSFQWDLNYSNPWVFRAMAGEM 272
Query: 1151 FGLNVDT------DALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRP 1193
L DA+ ++ + P+ + + + P
Sbjct: 273 LFLANLGVDILRMDAVAFIWKQMGTSCENLPQAHALIRAFNAVMRIAAP 321
|
| >d1m53a2 c.1.8.1 (A:43-520) Isomaltulose synthase PalI {Klebsiella sp., lx3 [TaxId: 576]} Length = 478 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Isomaltulose synthase PalI species: Klebsiella sp., lx3 [TaxId: 576]
Score = 50.4 bits (119), Expect = 1e-06
Identities = 36/240 (15%), Positives = 65/240 (27%), Gaps = 36/240 (15%)
Query: 1033 FGTPEQLKYLVDECHKAGLYVLLDVVH-----SHASKNVLDGLNEFDGTQACFFHDGPRG 1087
+GT E LV E K + +++DVV H F+ DG
Sbjct: 75 YGTMEDFDSLVAEMKKRNMRLMIDVVINHTSDQHPWFIQSKSDKNNPYRDYYFWRDGKDN 134
Query: 1088 THP--------------------------LWDSRLFNYSEIEVLRFLLSNLRWYLDEYQF 1121
P N+ +V L + LR++LD
Sbjct: 135 QPPNNYPSFFGGSAWQKDAKSGQYYLHYFARQQPDLNWDNPKVREDLYAMLRFWLD-KGV 193
Query: 1122 DGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIA 1181
G RFD V + + + + Y+ N+ + +Y
Sbjct: 194 SGMRFDTVATYSKIPGFPNLTPEQQKNFAEQYTMGPNIHRYIQEMNRKVLSRYDVATAGE 253
Query: 1182 EDVSGMPASCRPVTEGG----TGFDYRLVSLEGSALSALFDAAMNTTEERFKWLSADPGY 1237
+ S + F + L+ L+ + + + ++ R D
Sbjct: 254 IFGVPLDRSSQFFDRRRHELNMAFMFDLIRLDRDSNERWRHKSWSLSQFRQIISKMDVTV 313
|
| >d1iv8a2 c.1.8.1 (A:1-653) Maltooligosyl trehalose synthase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} Length = 653 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Maltooligosyl trehalose synthase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Score = 50.7 bits (121), Expect = 1e-06
Identities = 22/150 (14%), Positives = 51/150 (34%), Gaps = 10/150 (6%)
Query: 1033 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKN---------VLDGLNEFDGTQACFFHD 1083
G ++ + L++ H GL ++ D+V +H + N + G T FF +
Sbjct: 62 LGGEKEYRRLIETAHTIGLGIIQDIVPNHMAVNSLNWRLMDVLKMGKKSKYYTYFDFFPE 121
Query: 1084 GPRGTHPLWDSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLY-HNHGCGEG 1142
+ P+ L +L+ + ++L+ +++ + +
Sbjct: 122 DDKIRLPILGEDLDTVISKGLLKIVKDGDEYFLEYFKWKLPLTEVGNDIYDTLQKQNYTL 181
Query: 1143 FSGHYDEYFGLNVDTDALIYLMVANKFLHD 1172
S + D + LI + V +
Sbjct: 182 MSWKNPPSYRRFFDVNTLIGVNVEKDHVFQ 211
|
| >d1mxga2 c.1.8.1 (A:1-361) Bacterial alpha-amylase {Archaeon Pyrococcus woesei [TaxId: 2262]} Length = 361 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Bacterial alpha-amylase species: Archaeon Pyrococcus woesei [TaxId: 2262]
Score = 47.6 bits (112), Expect = 7e-06
Identities = 30/164 (18%), Positives = 51/164 (31%), Gaps = 21/164 (12%)
Query: 1033 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHP-- 1090
FG+ E+L L+ H G+ V+ DVV +H + L+ F G +
Sbjct: 83 FGSKEELVRLIQTAHAYGIKVIADVVINHRAGGDLEWNPFVGDYTWTDFSKVASGKYTAN 142
Query: 1091 ----------------LWDSRLFNYSEIEVLRFLLSNLR---WYLDEYQFDGFRFDGVTS 1131
+ + +L + YL FDG+RFD V
Sbjct: 143 YLDFHPNELHCCDEGTFGGFPDICHHKEWDQYWLWKSNESYAAYLRSIGFDGWRFDYVKG 202
Query: 1132 MLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYP 1175
+ G + + + DAL+ + +P
Sbjct: 203 YGAWVVRDWLNWWGGWAVGEYWDTNVDALLSWAYESGAKVFDFP 246
|
| >d1ht6a2 c.1.8.1 (A:1-347) Plant alpha-amylase {Barley (Hordeum vulgare), AMY1 isozyme [TaxId: 4513]} Length = 347 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Plant alpha-amylase species: Barley (Hordeum vulgare), AMY1 isozyme [TaxId: 4513]
Score = 47.3 bits (111), Expect = 8e-06
Identities = 26/129 (20%), Positives = 39/129 (30%), Gaps = 25/129 (19%)
Query: 1022 YLVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGL--------NEF 1073
Y +D +G +LK L+ H G+ + D+V +H + D
Sbjct: 58 YDIDASK----YGNAAELKSLIGALHGKGVQAIADIVINHRCADYKDSRGIYCIFEGGTS 113
Query: 1074 DGTQACFFHDGPRGTHPLWDSRL-------------FNYSEIEVLRFLLSNLRWYLDEYQ 1120
DG H R D ++ V R L L W +
Sbjct: 114 DGRLDWGPHMICRDDTKYSDGTANLDTGADFAAAPDIDHLNDRVQRELKEWLLWLKSDLG 173
Query: 1121 FDGFRFDGV 1129
FD +R D
Sbjct: 174 FDAWRLDFA 182
|
| >d1uoka2 c.1.8.1 (A:1-479) Oligo-1,6, glucosidase {Bacillus cereus [TaxId: 1396]} Length = 479 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Oligo-1,6, glucosidase species: Bacillus cereus [TaxId: 1396]
Score = 47.0 bits (110), Expect = 1e-05
Identities = 31/205 (15%), Positives = 58/205 (28%), Gaps = 36/205 (17%)
Query: 1033 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGL-----NEFDGTQACFFHDGPRG 1087
FGT E L+ E H+ + +++D+V +H S + + + G G
Sbjct: 75 FGTMEDWDELLHEMHERNMKLMMDLVVNHTSDEHNWFIESRKSKDNKYRDYYIWRPGKEG 134
Query: 1088 THPLWDSRLFNYSEIE--------------------------VLRFLLSNLRWYLDEYQF 1121
P F+ S + V + + ++++L E
Sbjct: 135 KEPNNWGAAFSGSAWQYDEMTDEYYLHLFSKKQPDLNWDNEKVRQDVYEMMKFWL-EKGI 193
Query: 1122 DGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDA---LIYLMVANKFLHDKYPEII 1178
DGFR D + + G + G + YL N+ + Y +
Sbjct: 194 DGFRMDVIN-FISKEEGLPTVETEEEGYVSGHKHFMNGPNIHKYLHEMNEEVLSHYDIMT 252
Query: 1179 TIAEDVSGMPASCRPVTEGGTGFDY 1203
+ E
Sbjct: 253 VGEMPGVTTEEAKLYTGEERKELQM 277
|
| >d1hvxa2 c.1.8.1 (A:1-393) Bacterial alpha-amylase {Bacillus stearothermophilus [TaxId: 1422]} Length = 393 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Bacterial alpha-amylase species: Bacillus stearothermophilus [TaxId: 1422]
Score = 46.1 bits (108), Expect = 2e-05
Identities = 20/119 (16%), Positives = 34/119 (28%), Gaps = 10/119 (8%)
Query: 1033 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLW 1092
+GT Q + H AG+ V DVV H + + GT+ +
Sbjct: 78 YGTKAQYLQAIQAAHAAGMQVYADVVFDHKGGADGTEWVDAVEVNPSDRNQEISGTYQIQ 137
Query: 1093 DSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYF 1151
F++ +++ + FDGV F G +
Sbjct: 138 AWTKFDFPGRG----------NTYSSFKWRWYHFDGVDWDESRKLSRIYKFRGIGKAWD 186
|
| >d1ud2a2 c.1.8.1 (A:1-390) Bacterial alpha-amylase {Bacillus sp., ksm-k38 [TaxId: 1409]} Length = 390 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Bacterial alpha-amylase species: Bacillus sp., ksm-k38 [TaxId: 1409]
Score = 46.2 bits (108), Expect = 2e-05
Identities = 18/119 (15%), Positives = 38/119 (31%), Gaps = 5/119 (4%)
Query: 1033 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLW 1092
+GT QL+ + + V DVV +H G + + QA + R
Sbjct: 77 YGTKAQLERAIGSLKSNDINVYGDVVMNHKM-----GADFTEAVQAVQVNPTNRWQDISG 131
Query: 1093 DSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYF 1151
+ ++ + + + + F+G +D + ++ DE
Sbjct: 132 AYTIDAWTGFDFSGRNNAYSDFKWRWFHFNGVDWDQRYQENHIFRFANTNWNWRVDEEN 190
|
| >d1e43a2 c.1.8.1 (A:1-393) Bacterial alpha-amylase {Chimera (Bacillus amyloliquefaciens) and (Bacillus licheniformis) [TaxId: 1390]} Length = 393 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Bacterial alpha-amylase species: Chimera (Bacillus amyloliquefaciens) and (Bacillus licheniformis) [TaxId: 1390]
Score = 45.7 bits (107), Expect = 2e-05
Identities = 20/122 (16%), Positives = 43/122 (35%), Gaps = 7/122 (5%)
Query: 1033 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLW 1092
+GT +L+ + H + V DVV +H + + + A + R
Sbjct: 75 YGTKSELQDAIGSLHSRNVQVYGDVVLNHKAGA-----DATEDVTAVEVNPANRNQETSE 129
Query: 1093 DSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDG--VTSMLYHNHGCGEGFSGHYDEY 1150
+ ++ +++ + + Y FDG +D S ++ G G+ +
Sbjct: 130 EYQIKAWTDFRFPGRGNTYSDFKWHWYHFDGADWDESRKISRIFKFRGEGKAWDWEVSSE 189
Query: 1151 FG 1152
G
Sbjct: 190 NG 191
|
| >d1hx0a2 c.1.8.1 (A:1-403) Animal alpha-amylase {Pig (Sus scrofa) [TaxId: 9823]} Length = 403 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Animal alpha-amylase species: Pig (Sus scrofa) [TaxId: 9823]
Score = 45.7 bits (107), Expect = 3e-05
Identities = 17/131 (12%), Positives = 32/131 (24%), Gaps = 32/131 (24%)
Query: 1033 FGTPEQLKYLVDECHKAGLYVLLDVVHSHAS----------------------------- 1063
G + + +V C+ G+ + +D V +H
Sbjct: 73 SGNENEFRDMVTRCNNVGVRIYVDAVINHMCGSGAAAGTGTTCGSYCNPGNREFPAVPYS 132
Query: 1064 KNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRL--FNYSEIEVLRFLLSNLRWYLDEYQF 1121
+ + ++ P L + V + L +D
Sbjct: 133 AWDFNDGKCKTASGGIESYNDPYQVRDCQLVGLLDLALEKDYVRSMIADYLNKLID-IGV 191
Query: 1122 DGFRFDGVTSM 1132
GFR D M
Sbjct: 192 AGFRIDASKHM 202
|
| >d1gjwa2 c.1.8.1 (A:1-572) Maltosyltransferase {Thermotoga maritima [TaxId: 2336]} Length = 572 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Maltosyltransferase species: Thermotoga maritima [TaxId: 2336]
Score = 45.4 bits (106), Expect = 4e-05
Identities = 21/173 (12%), Positives = 46/173 (26%), Gaps = 30/173 (17%)
Query: 1033 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKN---VLDGLNEFDGTQACFFHDGPRGTH 1089
F E+ K V+ CH G+ V+LD + A+++ + + + F + D
Sbjct: 178 FKVDEEFKAFVEACHILGIRVILDFIPRTAARDSDLIREHPDWFYWIKVEELADYTPPRA 237
Query: 1090 PLWDSRLF-------------------------NYSEIEVLRFLLSNLRWYLDEYQFDGF 1124
++ N + + + L+ F
Sbjct: 238 EELPFKVPDEDELEIIYNKENVKRHLKKFTLPPNLIDPQKWEKIKREEGNILE-LIVKEF 296
Query: 1125 RFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEI 1177
+ + L+ +A + N+ + Y I
Sbjct: 297 GIITPPGFSDLINDPQPTWDDVTFLRLYLD-HPEASKRFLDPNQPPYVLYDVI 348
|
| >d1ua7a2 c.1.8.1 (A:4-347) Bacterial alpha-amylase {Bacillus subtilis [TaxId: 1423]} Length = 344 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Bacterial alpha-amylase species: Bacillus subtilis [TaxId: 1423]
Score = 44.9 bits (105), Expect = 4e-05
Identities = 25/130 (19%), Positives = 44/130 (33%), Gaps = 11/130 (8%)
Query: 1033 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRG----- 1087
GT ++ K + + G+ V++D V +H + + NE +
Sbjct: 71 LGTEQEFKEMCAAAEEYGIKVIVDAVINHTTFDYAAISNEVKSIPNWTHGNTQIKNWSDR 130
Query: 1088 ----THPLWDSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSM-LYHNHGCGEG 1142
+ L +N +V +L L L+ DGFRFD + L + G
Sbjct: 131 WDVTQNSLLGLYDWNTQNTQVQSYLKRFLERALN-DGADGFRFDAAKHIELPDDGSYGSQ 189
Query: 1143 FSGHYDEYFG 1152
F +
Sbjct: 190 FWPNITNTSA 199
|
| >d1lwha2 c.1.8.1 (A:1-391) 4-alpha-glucanotransferase {Thermotoga maritima [TaxId: 2336]} Length = 391 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: 4-alpha-glucanotransferase species: Thermotoga maritima [TaxId: 2336]
Score = 39.6 bits (91), Expect = 0.002
Identities = 23/147 (15%), Positives = 46/147 (31%), Gaps = 7/147 (4%)
Query: 1012 EKFGTPEQLKYLVDECHKAG------LFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKN 1065
++G+ + K +++ H +G L + + G D +
Sbjct: 64 AEYGSEREFKEMIEAFHDSGIKVVLDLPIHHTGFLHTWFQKALKGDPHYRDYYVWANKET 123
Query: 1066 VLDGLNEFDGTQACFFHDGPRGTHPLWDSRLFNYSEI-EVLRFLLSNLRWYLDEYQFDGF 1124
LD E+DG + + R L+ + + + + L +L + DGF
Sbjct: 124 DLDERREWDGEKIWHPLEDGRFYRGLFGPFSPDLNYDNPQVFDEMKRLVLHLLDMGVDGF 183
Query: 1125 RFDGVTSMLYHNHGCGEGFSGHYDEYF 1151
RFD M + +
Sbjct: 184 RFDAAKHMRDTIEQNVRFWKYFLSDLK 210
|
| >d1wzaa2 c.1.8.1 (A:28-436) Bacterial alpha-amylase {Halothermothrix orenii [TaxId: 31909]} Length = 409 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Bacterial alpha-amylase species: Halothermothrix orenii [TaxId: 31909]
Score = 39.7 bits (91), Expect = 0.002
Identities = 25/150 (16%), Positives = 46/150 (30%), Gaps = 30/150 (20%)
Query: 1033 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKN--------------------------V 1066
+GT E LV+ H+ G+ V++D+ +H S+
Sbjct: 78 YGTLEDFHKLVEAAHQRGIKVIIDLPINHTSERHPWFLKASRDKNSEYRDYYVWAGPDTD 137
Query: 1067 LDGLNEFDGTQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSNLRWYL----DEYQFD 1122
G + G + NY+ EV ++ +++L D ++ D
Sbjct: 138 TKETKLDGGRVWHYSPTGMYYGYFWSGMPDLNYNNPEVQEKVIGIAKYWLKQGVDGFRLD 197
Query: 1123 GFRFDGVTSMLYHNHGCGEGFSGHYDEYFG 1152
G + N E F +E
Sbjct: 198 GAMHIFPPAQYDKNFTWWEKFRQEIEEVKP 227
|
| >d2bhua3 c.1.8.1 (A:111-530) Glycosyltrehalose trehalohydrolase, central domain {Deinococcus radiodurans [TaxId: 1299]} Length = 420 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Glycosyltrehalose trehalohydrolase, central domain species: Deinococcus radiodurans [TaxId: 1299]
Score = 39.3 bits (90), Expect = 0.003
Identities = 40/170 (23%), Positives = 61/170 (35%), Gaps = 30/170 (17%)
Query: 1033 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLW 1092
+G PE L LVD H+ GL V LDVV++H + N +F D +
Sbjct: 79 YGRPEDLMALVDAAHRLGLGVFLDVVYNHFGPS----GNYLSSYAPSYFTDRFSSAWGMG 134
Query: 1093 DSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFG 1152
+Y+E + R++ N R +L +Y FDG R D M +
Sbjct: 135 ----LDYAEPHMRRYVTGNARMWLRDYHFDGLRLDATPYMTDDSETH------------- 177
Query: 1153 LNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFD 1202
L + +H+ + +AED +P G D
Sbjct: 178 ---------ILTELAQEIHELGGTHLLLAEDHRNLPDLVTVNHLDGIWTD 218
|
| >d1wzla3 c.1.8.1 (A:121-502) Maltogenic amylase, central domain {Thermoactinomyces vulgaris, TVAII [TaxId: 2026]} Length = 382 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Maltogenic amylase, central domain species: Thermoactinomyces vulgaris, TVAII [TaxId: 2026]
Score = 38.9 bits (89), Expect = 0.004
Identities = 26/144 (18%), Positives = 45/144 (31%), Gaps = 17/144 (11%)
Query: 1024 VDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHS------HASKNVLDGLNEFDGTQ 1077
D FG + LVDE H+ G+ ++LD V + A ++VL +
Sbjct: 87 ADYLAIDPQFGDLPTFRRLVDEAHRRGIKIILDAVFNHAGDQFFAFRDVLQKGEQSRYKD 146
Query: 1078 ACFFHDGPRGTHPLWDSRL----------FNYSEIEVLRFLLSNLRWYLDEYQFDGFRFD 1127
F D P + EV +L R++++ DG+R D
Sbjct: 147 WFFIEDFPVSKTSRTNYETFAVQVPAMPKLRTENPEVKEYLFDVARFWME-QGIDGWRLD 205
Query: 1128 GVTSMLYHNHGCGEGFSGHYDEYF 1151
+ + +
Sbjct: 206 VANEVDHAFWREFRRLVKSLNPDA 229
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1276 | |||
| d2bhua3 | 420 | Glycosyltrehalose trehalohydrolase, central domain | 100.0 | |
| d1j0ha3 | 382 | Neopullulanase, central domain {Bacillus stearothe | 100.0 | |
| d1m7xa3 | 396 | 1,4-alpha-glucan branching enzyme, central domain | 100.0 | |
| d1h3ga3 | 422 | Cyclomaltodextrinase, central domain {Flavobacteri | 100.0 | |
| d1eh9a3 | 400 | Glycosyltrehalose trehalohydrolase, central domain | 100.0 | |
| d1wzla3 | 382 | Maltogenic amylase, central domain {Thermoactinomy | 100.0 | |
| d1qhoa4 | 407 | Cyclodextrin glycosyltransferase {Bacillus stearot | 100.0 | |
| d2guya2 | 381 | Fungal alpha-amylases {Aspergillus oryzae, Taka-am | 100.0 | |
| d1m53a2 | 478 | Isomaltulose synthase PalI {Klebsiella sp., lx3 [T | 100.0 | |
| d1bf2a3 | 475 | Isoamylase, central domain {Pseudomonas amyloderam | 100.0 | |
| d1wzaa2 | 409 | Bacterial alpha-amylase {Halothermothrix orenii [T | 100.0 | |
| d1uoka2 | 479 | Oligo-1,6, glucosidase {Bacillus cereus [TaxId: 13 | 100.0 | |
| d2aaaa2 | 381 | Fungal alpha-amylases {Aspergillus niger, acid amy | 100.0 | |
| d1ea9c3 | 382 | Maltogenic amylase, central domain {Bacillus sp., | 100.0 | |
| d1lwha2 | 391 | 4-alpha-glucanotransferase {Thermotoga maritima [T | 99.98 | |
| d3bmva4 | 406 | Cyclodextrin glycosyltransferase {Thermoanaerobact | 99.98 | |
| d1gjwa2 | 572 | Maltosyltransferase {Thermotoga maritima [TaxId: 2 | 99.97 | |
| d2fhfa5 | 563 | Pullulanase PulA {Klebsiella pneumoniae [TaxId: 57 | 99.97 | |
| d1ji1a3 | 432 | Maltogenic amylase, central domain {Thermoactinomy | 99.97 | |
| d1gcya2 | 357 | G4-amylase (1,4-alpha-D-glucan maltotetrahydrolase | 99.97 | |
| d1ua7a2 | 344 | Bacterial alpha-amylase {Bacillus subtilis [TaxId: | 99.96 | |
| d2d3na2 | 394 | Bacterial alpha-amylase {Bacillus sp. 707 [TaxId: | 99.96 | |
| d1g5aa2 | 554 | Amylosucrase {Neisseria polysaccharea [TaxId: 489] | 99.96 | |
| d1e43a2 | 393 | Bacterial alpha-amylase {Chimera (Bacillus amyloli | 99.96 | |
| d1ht6a2 | 347 | Plant alpha-amylase {Barley (Hordeum vulgare), AMY | 99.95 | |
| d1hvxa2 | 393 | Bacterial alpha-amylase {Bacillus stearothermophil | 99.95 | |
| d1mxga2 | 361 | Bacterial alpha-amylase {Archaeon Pyrococcus woese | 99.95 | |
| d1jaea2 | 378 | Animal alpha-amylase {Yellow mealworm (Tenebrio mo | 99.94 | |
| d1g94a2 | 354 | Bacterial alpha-amylase {Pseudoalteromonas halopla | 99.94 | |
| d1ud2a2 | 390 | Bacterial alpha-amylase {Bacillus sp., ksm-k38 [Ta | 99.93 | |
| d1hx0a2 | 403 | Animal alpha-amylase {Pig (Sus scrofa) [TaxId: 982 | 99.92 | |
| d1r7aa2 | 434 | Sucrose phosphorylase {Bifidobacterium adolescenti | 99.9 | |
| d1iv8a2 | 653 | Maltooligosyl trehalose synthase {Archaeon Sulfolo | 99.84 | |
| d1m7xa1 | 110 | 1,4-alpha-glucan branching enzyme, N-terminal doma | 99.77 | |
| d1n11a_ | 408 | Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} | 99.69 | |
| d1n11a_ | 408 | Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} | 99.65 | |
| d1m7xa1 | 110 | 1,4-alpha-glucan branching enzyme, N-terminal doma | 99.63 | |
| d2fhfa1 | 115 | Pullulanase PulA {Klebsiella pneumoniae [TaxId: 57 | 99.35 | |
| d1uoha_ | 223 | 26S proteasome non-ATPase regulatory subunit 10, g | 99.32 | |
| d2bhua1 | 97 | Glycosyltrehalose trehalohydrolase, N-terminal dom | 99.31 | |
| d1eh9a1 | 90 | Glycosyltrehalose trehalohydrolase, N-terminal dom | 99.26 | |
| d1uoha_ | 223 | 26S proteasome non-ATPase regulatory subunit 10, g | 99.26 | |
| d1wdya_ | 285 | RNase L, 2-5a-dependent ribonuclease {Human (Homo | 99.26 | |
| d1oy3d_ | 255 | Transcription factor inhibitor I-kappa-B-beta, IKB | 99.22 | |
| d1oy3d_ | 255 | Transcription factor inhibitor I-kappa-B-beta, IKB | 99.2 | |
| d1ixva_ | 229 | 26S proteasome non-ATPase regulatory subunit 10, g | 99.16 | |
| d1wdya_ | 285 | RNase L, 2-5a-dependent ribonuclease {Human (Homo | 99.14 | |
| d1eh9a1 | 90 | Glycosyltrehalose trehalohydrolase, N-terminal dom | 99.09 | |
| d1ixva_ | 229 | 26S proteasome non-ATPase regulatory subunit 10, g | 98.99 | |
| d2bhua1 | 97 | Glycosyltrehalose trehalohydrolase, N-terminal dom | 98.99 | |
| d1s70b_ | 291 | Myosin phosphatase targeting subunit 1, MYPT1 {Chi | 98.92 | |
| d2ajaa1 | 346 | Hypothetical protein LPG2416 {Legionella pneumophi | 98.92 | |
| d2fo1e1 | 277 | Lin-12 {Caenorhabditis elegans [TaxId: 6239]} | 98.92 | |
| d1bf2a1 | 162 | Isoamylase, N-terminal domain N {Pseudomonas amylo | 98.91 | |
| d1bd8a_ | 156 | Cell cycle inhibitor p19ink4D {Human (Homo sapiens | 98.87 | |
| d2fo1e1 | 277 | Lin-12 {Caenorhabditis elegans [TaxId: 6239]} | 98.85 | |
| d1ihba_ | 156 | p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606] | 98.83 | |
| d1s70b_ | 291 | Myosin phosphatase targeting subunit 1, MYPT1 {Chi | 98.82 | |
| d1ot8a_ | 209 | Neurogenic locus notch receptor domain {Fruit fly | 98.79 | |
| d2ajaa1 | 346 | Hypothetical protein LPG2416 {Legionella pneumophi | 98.77 | |
| d2fhfa1 | 115 | Pullulanase PulA {Klebsiella pneumoniae [TaxId: 57 | 98.73 | |
| d1iknd_ | 221 | I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606 | 98.71 | |
| d1awcb_ | 153 | GA bindinig protein (GABP) beta 1 {Mouse (Mus musc | 98.68 | |
| d1k1aa_ | 228 | bcl-3 {Human (Homo sapiens) [TaxId: 9606]} | 98.68 | |
| d1iknd_ | 221 | I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606 | 98.68 | |
| d1awcb_ | 153 | GA bindinig protein (GABP) beta 1 {Mouse (Mus musc | 98.64 | |
| d1k1aa_ | 228 | bcl-3 {Human (Homo sapiens) [TaxId: 9606]} | 98.63 | |
| d1bi7b_ | 125 | Cell cycle inhibitor p16ink4A {Human (Homo sapiens | 98.53 | |
| d1bd8a_ | 156 | Cell cycle inhibitor p19ink4D {Human (Homo sapiens | 98.5 | |
| d1ihba_ | 156 | p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606] | 98.48 | |
| d1ycsb1 | 130 | 53BP2 {Human (Homo sapiens) [TaxId: 9606]} | 98.41 | |
| d1ot8a_ | 209 | Neurogenic locus notch receptor domain {Fruit fly | 98.41 | |
| d1bf2a1 | 162 | Isoamylase, N-terminal domain N {Pseudomonas amylo | 98.35 | |
| d1bi7b_ | 125 | Cell cycle inhibitor p16ink4A {Human (Homo sapiens | 98.29 | |
| d1ycsb1 | 130 | 53BP2 {Human (Homo sapiens) [TaxId: 9606]} | 98.26 | |
| d1m7xa3 | 396 | 1,4-alpha-glucan branching enzyme, central domain | 98.15 | |
| d1g94a2 | 354 | Bacterial alpha-amylase {Pseudoalteromonas halopla | 98.02 | |
| d1jaea2 | 378 | Animal alpha-amylase {Yellow mealworm (Tenebrio mo | 97.95 | |
| d1myoa_ | 118 | Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116] | 97.95 | |
| d1dcqa1 | 154 | Pyk2-associated protein beta {Mouse (Mus musculus) | 97.68 | |
| d1myoa_ | 118 | Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116] | 97.66 | |
| d1hx0a2 | 403 | Animal alpha-amylase {Pig (Sus scrofa) [TaxId: 982 | 97.63 | |
| d2qlvb1 | 87 | SIP2 {Saccharomyces cerevisiae [TaxId: 4932]} | 97.57 | |
| d1ud2a2 | 390 | Bacterial alpha-amylase {Bacillus sp., ksm-k38 [Ta | 97.37 | |
| d1dcqa1 | 154 | Pyk2-associated protein beta {Mouse (Mus musculus) | 97.34 | |
| d1sw6a_ | 301 | Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch | 97.22 | |
| d1lwha2 | 391 | 4-alpha-glucanotransferase {Thermotoga maritima [T | 97.22 | |
| d1ua7a2 | 344 | Bacterial alpha-amylase {Bacillus subtilis [TaxId: | 97.21 | |
| d1m53a2 | 478 | Isomaltulose synthase PalI {Klebsiella sp., lx3 [T | 97.2 | |
| d1eh9a3 | 400 | Glycosyltrehalose trehalohydrolase, central domain | 97.19 | |
| d1gcya2 | 357 | G4-amylase (1,4-alpha-D-glucan maltotetrahydrolase | 97.16 | |
| d1z0na1 | 87 | 5'-AMP-activated protein kinase subunit beta-1 {Ra | 97.12 | |
| d1uoka2 | 479 | Oligo-1,6, glucosidase {Bacillus cereus [TaxId: 13 | 97.05 | |
| d1ea9c3 | 382 | Maltogenic amylase, central domain {Bacillus sp., | 96.94 | |
| d2bhua3 | 420 | Glycosyltrehalose trehalohydrolase, central domain | 96.91 | |
| d1sw6a_ | 301 | Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch | 96.83 | |
| d1wzaa2 | 409 | Bacterial alpha-amylase {Halothermothrix orenii [T | 96.77 | |
| d1ht6a2 | 347 | Plant alpha-amylase {Barley (Hordeum vulgare), AMY | 96.71 | |
| d1hvxa2 | 393 | Bacterial alpha-amylase {Bacillus stearothermophil | 96.68 | |
| d1wzla3 | 382 | Maltogenic amylase, central domain {Thermoactinomy | 96.68 | |
| d2d3na2 | 394 | Bacterial alpha-amylase {Bacillus sp. 707 [TaxId: | 96.53 | |
| d1bf2a3 | 475 | Isoamylase, central domain {Pseudomonas amyloderam | 96.53 | |
| d2qlvb1 | 87 | SIP2 {Saccharomyces cerevisiae [TaxId: 4932]} | 96.52 | |
| d1e43a2 | 393 | Bacterial alpha-amylase {Chimera (Bacillus amyloli | 96.49 | |
| d1z0na1 | 87 | 5'-AMP-activated protein kinase subunit beta-1 {Ra | 96.47 | |
| d1mxga2 | 361 | Bacterial alpha-amylase {Archaeon Pyrococcus woese | 96.37 | |
| d1qhoa4 | 407 | Cyclodextrin glycosyltransferase {Bacillus stearot | 96.34 | |
| d1m7xa2 | 106 | 1,4-alpha-glucan branching enzyme {Escherichia col | 96.32 | |
| d2guya2 | 381 | Fungal alpha-amylases {Aspergillus oryzae, Taka-am | 96.32 | |
| d1j0ha3 | 382 | Neopullulanase, central domain {Bacillus stearothe | 96.25 | |
| d1h3ga3 | 422 | Cyclomaltodextrinase, central domain {Flavobacteri | 96.24 | |
| d3bmva4 | 406 | Cyclodextrin glycosyltransferase {Thermoanaerobact | 96.01 | |
| d1gjwa2 | 572 | Maltosyltransferase {Thermotoga maritima [TaxId: 2 | 95.84 | |
| d2aaaa2 | 381 | Fungal alpha-amylases {Aspergillus niger, acid amy | 95.57 | |
| d1zy9a2 | 348 | Alpha-galactosidase GalA catalytic domain {Thermot | 95.38 | |
| d2f2ha4 | 338 | Putative glucosidase YicI, domain 2 {Escherichia c | 94.7 | |
| d1ji1a3 | 432 | Maltogenic amylase, central domain {Thermoactinomy | 94.66 | |
| d1g5aa2 | 554 | Amylosucrase {Neisseria polysaccharea [TaxId: 489] | 94.22 | |
| d1ceoa_ | 340 | Endoglucanase CelC {Clostridium thermocellum [TaxI | 93.96 | |
| d1ecea_ | 358 | Endocellulase E1 {Acidothermus cellulolyticus [Tax | 93.61 | |
| d2pb1a1 | 394 | Exo-beta-(1,3)-glucanase {Yeast (Candida albicans) | 93.33 | |
| d1edta_ | 265 | Endo-beta-N-acetylglucosaminidase {Streptomyces pl | 93.12 | |
| d1iv8a2 | 653 | Maltooligosyl trehalose synthase {Archaeon Sulfolo | 92.47 | |
| d1ur4a_ | 387 | Beta-1,4-galactanase {Bacillus licheniformis [TaxI | 92.19 | |
| d1rh9a1 | 370 | Beta-mannanase {Tomato (Lycopersicon esculentum) [ | 92.12 | |
| d1h4pa_ | 408 | Exo-beta-(1,3)-glucanase {Baker's yeast (Saccharom | 91.71 | |
| d1vjza_ | 325 | Endoglucanase homologue TM1752 {Thermotoga maritim | 89.76 | |
| d1foba_ | 334 | Beta-1,4-galactanase {Fungus (Aspergillus aculeatu | 89.38 | |
| d2aama1 | 285 | Hypothetical protein TM1410 {Thermotoga maritima [ | 88.76 | |
| d1hjsa_ | 332 | Beta-1,4-galactanase {Thielavia heterothallica, ak | 88.56 | |
| d2fhfa5 | 563 | Pullulanase PulA {Klebsiella pneumoniae [TaxId: 57 | 88.14 | |
| d1qhoa2 | 110 | Cyclodextrin glycosyltransferase, C-terminal domai | 87.7 | |
| d1x1na1 | 523 | Amylomaltase MalQ {Potato (Solanum tuberosum) [Tax | 87.6 | |
| d2ebna_ | 285 | Endo-beta-N-acetylglucosaminidase {Flavobacterium | 87.44 | |
| d1qnra_ | 344 | Beta-mannanase {Trichoderma reesei [TaxId: 51453]} | 84.4 | |
| d1tz7a1 | 485 | Amylomaltase MalQ {Aquifex aeolicus [TaxId: 63363] | 81.84 | |
| d1eoka_ | 282 | Endo-beta-N-acetylglucosaminidase {Flavobacterium | 81.75 | |
| d1x7fa2 | 244 | Outer surface protein, N-terminal domain {Bacillus | 81.68 | |
| d2c0ha1 | 350 | endo-1,4-beta-mannosidase {Blue mussel (Mytilus ed | 81.24 |
| >d2bhua3 c.1.8.1 (A:111-530) Glycosyltrehalose trehalohydrolase, central domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Glycosyltrehalose trehalohydrolase, central domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=100.00 E-value=5.1e-38 Score=357.89 Aligned_cols=205 Identities=27% Similarity=0.418 Sum_probs=166.9
Q ss_pred CCcCCCCC--CCCCCceEEEEecCCccccCccCcHHHHHHhhhhHHHHcCCCCCccceeecccccccccccccceeeccC
Q psy9003 883 HKWTSSKP--KKPDNLKIYESHVGICTQEQKCASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTN 960 (1276)
Q Consensus 883 y~W~~~rp--~~~~d~vIYElHVr~ft~~~~~Gtf~gl~ek~LdyLK~LGVna~d~wV~LmP~f~~eew~~~~pi~~l~~ 960 (1276)
|+|+++.+ +.++++||||+|||+|++. |||+|++++ |||||+||||+ |||||++
T Consensus 2 ~~w~~~~~~~~~~~~~viYe~~~~~f~~~---Gd~~g~~~~-ldyl~~LGv~~----i~L~Pv~---------------- 57 (420)
T d2bhua3 2 FDWTDADWHGIKLADCVFYEVHVGTFTPE---GTYRAAAEK-LPYLKELGVTA----IQVMPLA---------------- 57 (420)
T ss_dssp SCCCCTTCCCCCGGGCCEEEECHHHHSSS---CSHHHHHHT-HHHHHHHTCCE----EEECCCE----------------
T ss_pred cCCCCCCCCCCCccccEEEEEehhhcCCC---CCHHHHHHh-HHHHHHcCCCE----EEeCCCC----------------
Confidence 78887654 3568999999999999864 999999996 99999999999 9999544
Q ss_pred ccccccccccccCCCcccCCCccccccccccccccccCCCCCCcccccccccccCCCCCccccccccccCCCCCCHHHHH
Q psy9003 961 RRYMEKTVAYAESHDQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLK 1040 (1276)
Q Consensus 961 ~Pi~E~~i~~~~S~~~~~WGYdp~nyf~~d~~~y~~~S~~~Dp~~~~dap~~~yas~s~hkYt~D~~~ID~~~Gt~eEfK 1040 (1276)
+. + ...+|||++.||+ +++ |+||+++||+
T Consensus 58 ----~~--~-----~~~~~GY~~~d~~---------------------~vd-------------------p~~G~~~d~~ 86 (420)
T d2bhua3 58 ----AF--D-----GQRGWGYDGAAFY---------------------APY-------------------APYGRPEDLM 86 (420)
T ss_dssp ----EC--S-----SSCCCSTTCCEEE---------------------EEC-------------------GGGCCHHHHH
T ss_pred ----cC--C-----CCCCCCCCcccCC---------------------CcC-------------------cccCCHHHHH
Confidence 22 1 2356999999999 554 8999999999
Q ss_pred HHHHHHHHcCCEEEEEEeccccCCcccCCCcCCCCCCCcccccCCCCCCCCCCCcCCCCCcHHHHHHHHHHHHHHHHhCC
Q psy9003 1041 YLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSNLRWYLDEYQ 1120 (1276)
Q Consensus 1041 ~LV~alHk~GI~VILDvV~NHt~~~~~~~~~~f~g~~~~Yy~~~~~g~~~~W~g~~LN~~np~Vr~~Iidsl~~Wv~eyg 1120 (1276)
+||++||++||+||||+|+||++.++.+. ....+.+|... ....| +++||+.||+|+++|++++++|+++||
T Consensus 87 ~lv~~aH~~gi~VilD~V~NH~~~~~~~~----~~~~~~~~~~~---~~~~~-~~dlN~~np~v~~~~~~~~~~Wl~~~G 158 (420)
T d2bhua3 87 ALVDAAHRLGLGVFLDVVYNHFGPSGNYL----SSYAPSYFTDR---FSSAW-GMGLDYAEPHMRRYVTGNARMWLRDYH 158 (420)
T ss_dssp HHHHHHHHTTCEEEEEECCSCCCSSSCCH----HHHCGGGEEEE---EECSS-SEEECTTSHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhccccccccccccccCCCCccc----ccccccccccc---ccccc-cccccccChHHHHHHHHHhheeeeccc
Confidence 99999999999999999999999987542 22233333221 11223 579999999999999999999999999
Q ss_pred CcEEccCCccccccccCCCCCCCCCCCccccCCCCCchHHHHHHHHHHHHHhhCCCeEEEEEccCCCCCCcc
Q psy9003 1121 FDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCR 1192 (1276)
Q Consensus 1121 VDGFRfD~a~~L~~~d~g~g~~~~~~~~~~~~~~~d~~a~~Fl~el~~~Vr~~~PdvilIAE~~s~~p~~~~ 1192 (1276)
|||||||++..|... ....||+++++.+++..|+.++|||.|...|....
T Consensus 159 VDGfR~D~~~~l~~~----------------------~~~~~~~~~~~~~~~~~p~~~~i~E~~~~~~~~~~ 208 (420)
T d2bhua3 159 FDGLRLDATPYMTDD----------------------SETHILTELAQEIHELGGTHLLLAEDHRNLPDLVT 208 (420)
T ss_dssp CSEEEETTGGGCCCC----------------------SSSCHHHHHHHHHHTTCSCCEEEEECSSCCTHHHH
T ss_pred ccEEEEeeeeeeccc----------------------cccccHHHHHHHHHhhcCCceeeecccCCchhhhc
Confidence 999999999988421 01238899999999999999999999988876554
|
| >d1j0ha3 c.1.8.1 (A:124-505) Neopullulanase, central domain {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Neopullulanase, central domain species: Bacillus stearothermophilus [TaxId: 1422]
Probab=100.00 E-value=7.7e-36 Score=334.77 Aligned_cols=255 Identities=18% Similarity=0.244 Sum_probs=180.9
Q ss_pred CCCCceEEEEecCCccccC---------------------ccCcHHHHHHhhhhHHHHcCCCCCccceeecccccccccc
Q psy9003 892 KPDNLKIYESHVGICTQEQ---------------------KCASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWN 950 (1276)
Q Consensus 892 ~~~d~vIYElHVr~ft~~~---------------------~~Gtf~gl~ek~LdyLK~LGVna~d~wV~LmP~f~~eew~ 950 (1276)
+++++||||+||+.|+... ..|||+|++++ ||||++||||+ |||||++
T Consensus 8 w~~~~viY~v~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~gi~~k-ldyl~~LGv~~----i~L~Pi~------ 76 (382)
T d1j0ha3 8 WVKDTVWYQIFPERFANGNPSISPEGSRPWGSEDPTPTSFFGGDLQGIIDH-LDYLVDLGITG----IYLTPIF------ 76 (382)
T ss_dssp GGGGCCEEEECGGGTCCSCGGGSCTTCCCTTSSCCCSSCCCCCCHHHHHHT-HHHHHHHTCCE----EEECCCE------
T ss_pred chhCCEEEEEEcchhcCCCCCCCccccccccccCCccCccCCcCHHHHHHh-HHHHHHcCCCE----EEeCCCC------
Confidence 4578999999999997311 12999999996 99999999999 9999443
Q ss_pred cccceeeccCccccccccccccCCCcccCCCccccccccccccccccCCCCCCcccccccccccCCCCCccccccccccC
Q psy9003 951 MGNIVHTLTNRRYMEKTVAYAESHDQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKA 1030 (1276)
Q Consensus 951 ~~~pi~~l~~~Pi~E~~i~~~~S~~~~~WGYdp~nyf~~d~~~y~~~S~~~Dp~~~~dap~~~yas~s~hkYt~D~~~ID 1030 (1276)
+. ..+|||++.+|| +++
T Consensus 77 --------------~~---------~~~~gy~~~d~~---------------------~vd------------------- 93 (382)
T d1j0ha3 77 --------------RS---------PSNHKYDTADYF---------------------EVD------------------- 93 (382)
T ss_dssp --------------EC---------SSSSCCSCSEEE---------------------EEC-------------------
T ss_pred --------------cC---------CcccCCCccccc---------------------ccC-------------------
Confidence 32 135999999999 555
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEEEeccccCCcccCCCcCC----CCCCCcccccC-------CCCCC---C-CCCCc
Q psy9003 1031 GLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEF----DGTQACFFHDG-------PRGTH---P-LWDSR 1095 (1276)
Q Consensus 1031 ~~~Gt~eEfK~LV~alHk~GI~VILDvV~NHt~~~~~~~~~~f----~g~~~~Yy~~~-------~~g~~---~-~W~g~ 1095 (1276)
|+||++++||+||++||++||+||||+|+||++.++++..... ....+.||... +.... . ....+
T Consensus 94 ~~~Gt~~~~~~lv~~aH~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (382)
T d1j0ha3 94 PHFGDKETLKTLIDRCHEKGIRVMLDAVFNHCGYEFAPFQDVWKNGESSKYKDWFHIHEFPLQTEPRPNYDTFAFVPQMP 173 (382)
T ss_dssp TTTCCHHHHHHHHHHHHHTTCEEEEEECCSBCCTTCHHHHHHHHHGGGCTTGGGBCBSSSSCCCSSSCSBCBSTTCTTSB
T ss_pred CCCCCHHHHHHHHHHhhhccceEEEEeeecccccccccchhhhccCCccccCCccccccccccccccccccccccCCCCc
Confidence 8999999999999999999999999999999999876532110 11112333211 11111 1 12257
Q ss_pred CCCCCcHHHHHHHHHHHHHHHHhCCCcEEccCCccccccccCCCCCCCCCCCccccCCCCCchHHHHHHHHHHHHHhhCC
Q psy9003 1096 LFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYP 1175 (1276)
Q Consensus 1096 ~LN~~np~Vr~~Iidsl~~Wv~eygVDGFRfD~a~~L~~~d~g~g~~~~~~~~~~~~~~~d~~a~~Fl~el~~~Vr~~~P 1175 (1276)
+||+++|+||++|++++++|+++|||||||||++.++. .+||+++.+.+++..|
T Consensus 174 dln~~n~~vr~~l~~~~~~wi~~~giDGfR~Da~~~~~--------------------------~~~~~~~~~~~~~~~p 227 (382)
T d1j0ha3 174 KLNTANPEVKRYLLDVATYWIREFDIDGWRLDVANEID--------------------------HEFWREFRQEVKALKP 227 (382)
T ss_dssp BBCTTSHHHHHHHHHHHHHHHHHHCCCEEEETTGGGSC--------------------------HHHHHHHHHHHHHHCT
T ss_pred ccccChHHHHHHHHHHHHhHhhhccccEEEecchhhcc--------------------------hhhhhhhhhhhhccCC
Confidence 99999999999999999999999999999999999883 3589999999999999
Q ss_pred CeEEEEEccCCCCCCccccccCCcccCcccC-CCccc---hh------hHHHHHHHHHHHHHhccc-CCCCCeeEeecCC
Q psy9003 1176 EIITIAEDVSGMPASCRPVTEGGTGFDYRLV-SLEGS---AL------SALFDAAMNTTEERFKWL-SADPGYVSTKHEG 1244 (1276)
Q Consensus 1176 dvilIAE~~s~~p~~~~p~~~gglGFD~~~n-~lEes---aL------S~~F~~~Ln~l~~~~p~L-~~~~~~~l~nHD~ 1244 (1276)
++++|||.|....... .+.+|++.++ .+... .+ ...+...........+.- ......++.|||+
T Consensus 228 ~~~~i~e~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~nHD~ 302 (382)
T d1j0ha3 228 DVYILGEIWHDAMPWL-----RGDQFDAVMNYPFTDGVLRFFAKEEISARQFANQMMHVLHSYPNNVNEAAFNLLGSHDT 302 (382)
T ss_dssp TCEEEECCSSCCGGGC-----SSSSCSEEBCHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHTSCHHHHHTCBCBSCCTTS
T ss_pred Cccccccccccchhhh-----cccccccccccccchhhhhhhhcccccchhhhhhhhhcccccccccCccceeeccCCCC
Confidence 9999999886543322 3567777766 22100 00 122333333322222210 0112345689999
Q ss_pred CeEEEEE
Q psy9003 1245 DKVIIFE 1251 (1276)
Q Consensus 1245 ~RVlsf~ 1251 (1276)
+|+.+..
T Consensus 303 ~R~~~~~ 309 (382)
T d1j0ha3 303 SRILTVC 309 (382)
T ss_dssp CCHHHHT
T ss_pred Ccccccc
Confidence 9987644
|
| >d1m7xa3 c.1.8.1 (A:227-622) 1,4-alpha-glucan branching enzyme, central domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: 1,4-alpha-glucan branching enzyme, central domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=5.8e-35 Score=321.86 Aligned_cols=238 Identities=28% Similarity=0.500 Sum_probs=171.8
Q ss_pred CceEEEEecCCccc---cCccCcHHHHHHhhhhHHHHcCCCCCccceeecccccccccccccceeeccCccccccccccc
Q psy9003 895 NLKIYESHVGICTQ---EQKCASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYA 971 (1276)
Q Consensus 895 d~vIYElHVr~ft~---~~~~Gtf~gl~ek~LdyLK~LGVna~d~wV~LmP~f~~eew~~~~pi~~l~~~Pi~E~~i~~~ 971 (1276)
+++|||+|||+|+. ++..|+|+|+++++||||++||||+ |||||++ ++ +
T Consensus 16 ~~~iYe~~~~~f~~~~~~~~~g~~~gi~~klidyl~~LGv~~----iwl~Pi~--------------------~~--~-- 67 (396)
T d1m7xa3 16 PISIYEVHLGSWRRHTDNNFWLSYRELADQLVPYAKWMGFTH----LELLPIN--------------------EH--P-- 67 (396)
T ss_dssp CCEEEEECTTSSCBCTTTCCBCCHHHHHHHHHHHHHHTTCSE----EEESCCE--------------------EC--S--
T ss_pred CcEEEEEccCccCCCCCCCCCCCHHHHHHHHHHHHHHcCCCE----EEeCCCC--------------------CC--C--
Confidence 47999999999974 4567999999998569999999999 9999544 32 2
Q ss_pred cCCCcccCCCccccccccccccccccCCCCCCcccccccccccCCCCCccccccccccCCCCCCHHHHHHHHHHHHHcCC
Q psy9003 972 ESHDQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGL 1051 (1276)
Q Consensus 972 ~S~~~~~WGYdp~nyf~~d~~~y~~~S~~~Dp~~~~dap~~~yas~s~hkYt~D~~~ID~~~Gt~eEfK~LV~alHk~GI 1051 (1276)
...+|||++.||| +++ |+|||.+|||+||++||++||
T Consensus 68 ---~~~~hGY~~~d~~---------------------~vd-------------------p~~Gt~~d~~~LV~~aH~~gi 104 (396)
T d1m7xa3 68 ---FDGSWGYQPTGLY---------------------APT-------------------RRFGTRDDFRYFIDAAHAAGL 104 (396)
T ss_dssp ---CGGGTTSSCSEEE---------------------EEC-------------------GGGSCHHHHHHHHHHHHHTTC
T ss_pred ---CCCCCCcCcCcCC---------------------CcC-------------------cccCCHHHHHHHHHHHhhhhh
Confidence 1246999999998 444 899999999999999999999
Q ss_pred EEEEEEeccccCCcccCCCcCCCCCCCcccccCCCCCCCCCCCcCCCCCcHHHHHHHHHHHHHHHHhCCCcEEccCCccc
Q psy9003 1052 YVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTS 1131 (1276)
Q Consensus 1052 ~VILDvV~NHt~~~~~~~~~~f~g~~~~Yy~~~~~g~~~~W~g~~LN~~np~Vr~~Iidsl~~Wv~eygVDGFRfD~a~~ 1131 (1276)
+||||+|+||++..+.+... +......++..........|+.+.+|+++|.++.++.+++++|+++||+||||+|.+..
T Consensus 105 ~VilD~V~NH~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gvDG~R~D~~~~ 183 (396)
T d1m7xa3 105 NVILDWVPGHFPTDDFALAE-FDGTNLYEHSDPREGYHQDWNTLIYNYGRREVSNFLVGNALYWIERFGIDALRVDAVAS 183 (396)
T ss_dssp EEEEEECTTSCCCSTTSSTT-GGGSCSSBCC-----------CCCBCTTSHHHHHHHHHHHHHHHHHSCCCEEEECCSHH
T ss_pred hhhhcccccccCCccccccc-ccCCccccccCCCCCCCCCCCCccccCCCchhHHHHHHHHHHHHHHhCCcceeeechhh
Confidence 99999999999998765321 11111111122223345678889999999999999999999999999999999999877
Q ss_pred cccccCCCCCCCCCCCccccCCCCCchHHHHHHHHHHHHHhhCCCeEEEEEccCCCCCCccccccCCcccCcccC
Q psy9003 1132 MLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDYRLV 1206 (1276)
Q Consensus 1132 L~~~d~g~g~~~~~~~~~~~~~~~d~~a~~Fl~el~~~Vr~~~PdvilIAE~~s~~p~~~~p~~~gglGFD~~~n 1206 (1276)
+...+.. ...+. ......+.....+.+.||++++..++...|+.++++|++...+............+++.++
T Consensus 184 ~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 256 (396)
T d1m7xa3 184 MIYRDYS-RKEGE-WIPNEFGGRENLEAIEFLRNTNRILGEQVSGAVTMAEESTDFPGVSRPQDMGGLGFWYKWN 256 (396)
T ss_dssp HHCC----------------CTTCCHHHHHHHHHHHHHHHHSSTTCEEEECCSSCCTTTTBCTTTTBSCCSEEEC
T ss_pred hccchhc-ccccc-cccccccccccchHHHHHHHHHHHHhhhCCCceEEEeecCCCccccccccccccchhhhhc
Confidence 6433211 01110 1122223344567889999999999999999999999998888776655555555565555
|
| >d1h3ga3 c.1.8.1 (A:96-517) Cyclomaltodextrinase, central domain {Flavobacterium sp. 92 [TaxId: 197856]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Cyclomaltodextrinase, central domain species: Flavobacterium sp. 92 [TaxId: 197856]
Probab=100.00 E-value=4e-35 Score=332.63 Aligned_cols=218 Identities=16% Similarity=0.134 Sum_probs=163.9
Q ss_pred CCCCCCCceEEEEecCCcccc---------------------CccCcHHHHHHhhhhHHHHcCCCCCccceeeccccccc
Q psy9003 889 KPKKPDNLKIYESHVGICTQE---------------------QKCASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDE 947 (1276)
Q Consensus 889 rp~~~~d~vIYElHVr~ft~~---------------------~~~Gtf~gl~ek~LdyLK~LGVna~d~wV~LmP~f~~e 947 (1276)
|+.++...||||++|+.|... ...|||+|++++ |||||+||||+ |||||+++
T Consensus 5 ~~~~~~~~viY~i~~~~F~~gd~~nd~~~~~~~~~~~~~~~~~~gGd~~Gl~~k-Ldyl~~LGv~~----I~l~Pi~~-- 77 (422)
T d1h3ga3 5 RQGFGPGDAIYQIMPDRFANGDPSNDNVAGMREQADRRHGGGRHGGDIRGTIDH-LDYIAGLGFTQ----LWPTPLVE-- 77 (422)
T ss_dssp CCCCCTTCCEEEECHHHHCCSCGGGSSCTTCSSCCCTTSTTSCCCCCHHHHHHT-HHHHHHHTCCE----EEECCCEE--
T ss_pred cCCCCCCCcEEEeChhhccCCCCCcCccCCccccccccccCCCCCcCHHHHHHh-HHHHHHCCCCE----EEeCCccc--
Confidence 334456789999999988421 123999999997 99999999999 99995543
Q ss_pred ccccccceeeccCccccccccccccCCCcccCCCccccccccccccccccCCCCCCcccccccccccCCCCCcccccccc
Q psy9003 948 DWNMGNIVHTLTNRRYMEKTVAYAESHDQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDEC 1027 (1276)
Q Consensus 948 ew~~~~pi~~l~~~Pi~E~~i~~~~S~~~~~WGYdp~nyf~~d~~~y~~~S~~~Dp~~~~dap~~~yas~s~hkYt~D~~ 1027 (1276)
. +. ....+|||++.||+ +++
T Consensus 78 ------------------~--~~---~~~~~~GY~~~d~~---------------------~vd---------------- 97 (422)
T d1h3ga3 78 ------------------N--DA---AAYSYHGYAATDHY---------------------RID---------------- 97 (422)
T ss_dssp ------------------C--CC---SSCGGGCCSCSEEE---------------------EEC----------------
T ss_pred ------------------C--CC---CCCCCCCCCccccC---------------------Ccc----------------
Confidence 2 11 12357999999999 444
Q ss_pred ccCCCCCCHHHHHHHHHHHHHcCCEEEEEEeccccCCcccCCCcCCCCCCCcccccC--------CCCCC----------
Q psy9003 1028 HKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDG--------PRGTH---------- 1089 (1276)
Q Consensus 1028 ~ID~~~Gt~eEfK~LV~alHk~GI~VILDvV~NHt~~~~~~~~~~f~g~~~~Yy~~~--------~~g~~---------- 1089 (1276)
|++|+.+|||+||++||++||+||||+|+||++.++.|....-......|.... ..+..
T Consensus 98 ---~~~Gt~~df~~lv~~~H~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (422)
T d1h3ga3 98 ---PRYGSNEDFVRLSTEARKRGMGLIQDVVLSHIGKHHWWMKDLPTPDWINYGGKFVPTQHHRVAVQDPYAAQADSENF 174 (422)
T ss_dssp ---TTTCCHHHHHHHHHHHHHTTCEEEEEECCSBCCTTSGGGGSCSSTTSBSCCSSCCBCCCCGGGGSCTTCCHHHHHHH
T ss_pred ---cccCCHHHHHHHHHHHHHhCccccccCccccccccchhhccccccccccccccccccccccccccccccccCcccce
Confidence 899999999999999999999999999999999988664211000000000000 00000
Q ss_pred ----CCCCCcCCCCCcHHHHHHHHHHHHHHHHhCCCcEEccCCccccccccCCCCCCCCCCCccccCCCCCchHHHHHHH
Q psy9003 1090 ----PLWDSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMV 1165 (1276)
Q Consensus 1090 ----~~W~g~~LN~~np~Vr~~Iidsl~~Wv~eygVDGFRfD~a~~L~~~d~g~g~~~~~~~~~~~~~~~d~~a~~Fl~e 1165 (1276)
..+..++||+.+|+||++|++++++|+++|||||||||++..+. ..||++
T Consensus 175 ~~~~~~~~~~dln~~n~~vr~~~~~~~~~w~~~~gvDGfR~Da~~~~~--------------------------~~f~~~ 228 (422)
T d1h3ga3 175 TKGWFVEGMPDLNQTNPLVANYLIQNNIWWIEYAGLSGLRIDTYGYSD--------------------------GAFLTE 228 (422)
T ss_dssp HHSBSSTTSCBBCTTSHHHHHHHHHHHHHHHHHHTCSEEEETTGGGSC--------------------------HHHHHH
T ss_pred eecccccCccccccccHHHHHHHhhhHHHHhhheeeeeeeeccccccc--------------------------chhhhh
Confidence 11134789999999999999999999999999999999988762 358999
Q ss_pred HHHHHHhhCCCeEEEEEccCCCCCCccccccCCcccC
Q psy9003 1166 ANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFD 1202 (1276)
Q Consensus 1166 l~~~Vr~~~PdvilIAE~~s~~p~~~~p~~~gglGFD 1202 (1276)
+++.+++..|++++|||.|...+.....+..+...++
T Consensus 229 ~~~~~~~~~~~~~~i~E~~~~~~~~~~~~~~~~~~~~ 265 (422)
T d1h3ga3 229 YTRRLMAEYPRLNMVGEEWSTRVPVVARWQRGKANFD 265 (422)
T ss_dssp HHHHHHHHCTTCEEEECCCCSCHHHHHTTSTTCCCTT
T ss_pred hhhhhhhccccceEEeeccccchhhhhhhcccccccc
Confidence 9999999999999999999877766665555544444
|
| >d1eh9a3 c.1.8.1 (A:91-490) Glycosyltrehalose trehalohydrolase, central domain {Archaeon Sulfolobus solfataricus, km1 [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Glycosyltrehalose trehalohydrolase, central domain species: Archaeon Sulfolobus solfataricus, km1 [TaxId: 2287]
Probab=100.00 E-value=1e-34 Score=326.42 Aligned_cols=210 Identities=28% Similarity=0.410 Sum_probs=165.3
Q ss_pred CCCCceEEEEecCCccccCccCcHHHHHHhhhhHHHHcCCCCCccceeecccccccccccccceeeccCccccccccccc
Q psy9003 892 KPDNLKIYESHVGICTQEQKCASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYA 971 (1276)
Q Consensus 892 ~~~d~vIYElHVr~ft~~~~~Gtf~gl~ek~LdyLK~LGVna~d~wV~LmP~f~~eew~~~~pi~~l~~~Pi~E~~i~~~ 971 (1276)
+.+++||||+|||+|++. |+|+|++++ |||||+||||+ |||||+++ . |
T Consensus 8 ~~~~~viYe~~v~~f~~~---Gd~~gi~~~-ldyi~~LGv~~----i~l~Pv~~--------------------~--~-- 55 (400)
T d1eh9a3 8 KKEDLIIYEIHVGTFTPE---GTFEGVIRK-LDYLKDLGITA----IEIMPIAQ--------------------F--P-- 55 (400)
T ss_dssp CSSSCCEEEECTTTSSSS---CSHHHHHHT-HHHHHHHTCCE----EEECCCBC--------------------C--S--
T ss_pred CCcCeEEEEEehhhhCCC---CCHHHHHHH-hHHHHHcCCCE----EEeCCcCc--------------------C--C--
Confidence 346899999999999864 999999996 99999999999 99995443 2 1
Q ss_pred cCCCcccCCCccccccccccccccccCCCCCCcccccccccccCCCCCccccccccccCCCCCCHHHHHHHHHHHHHcCC
Q psy9003 972 ESHDQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGL 1051 (1276)
Q Consensus 972 ~S~~~~~WGYdp~nyf~~d~~~y~~~S~~~Dp~~~~dap~~~yas~s~hkYt~D~~~ID~~~Gt~eEfK~LV~alHk~GI 1051 (1276)
...+|||+|.||+ +++ |+||+.+|||+||++||++||
T Consensus 56 ---~~~~~GY~~~d~~---------------------~vd-------------------~~~Gt~~dlk~lv~~~h~~gi 92 (400)
T d1eh9a3 56 ---GKRDWGYDGVYLY---------------------AVQ-------------------NSYGGPEGFRKLVDEAHKKGL 92 (400)
T ss_dssp ---SSCCCSTTCCCTT---------------------CBC-------------------STTCCHHHHHHHHHHHHHTTC
T ss_pred ---CCCCCCCCCCCCC---------------------CcC-------------------cccCCHHHHHHHHHHHHhcCC
Confidence 2356999999999 454 899999999999999999999
Q ss_pred EEEEEEeccccCCcccCCCcCCCCCCCcccccCCCCCCCCCCCcCCCCCcHHHHHHHHHHHHHHHHhCCCcEEccCCccc
Q psy9003 1052 YVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTS 1131 (1276)
Q Consensus 1052 ~VILDvV~NHt~~~~~~~~~~f~g~~~~Yy~~~~~g~~~~W~g~~LN~~np~Vr~~Iidsl~~Wv~eygVDGFRfD~a~~ 1131 (1276)
+||||+|+|||+.+++|... . +.||..... ....+..+.+++++|+|+++|++++++|+++|||||||+|+|..
T Consensus 93 ~VilD~V~NH~s~~~~~~~~----~-~~~~~~~~~-~~~~~~~~~~~~~np~v~~~l~d~~~~Wl~~~gvDGfR~Daa~~ 166 (400)
T d1eh9a3 93 GVILDVVYNHVGPEGNYMVK----L-GPYFSQKYK-TPWGLTFNFDDAESDEVRKFILENVEYWIKEYNVDGFRLDAVHA 166 (400)
T ss_dssp EEEEEECCSCCCSSSCCHHH----H-SCCSCSSCC-CSSSCCCCSSSTTHHHHHHHHHHHHHHHHHHSCCCCEEETTGGG
T ss_pred ceeeecccccccCCCcchhh----h-ccccccccc-cccccccccccccccHHHHHHHHHHHHHHhhcccceEEeechhh
Confidence 99999999999998765321 1 223322111 01122245677899999999999999999999999999999998
Q ss_pred cccccCCCCCCCCCCCccccCCCCCchHHHHHHHHHHHHHhhCCCeEEEEEccCCCCCCccccccCCcccCcccC
Q psy9003 1132 MLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDYRLV 1206 (1276)
Q Consensus 1132 L~~~d~g~g~~~~~~~~~~~~~~~d~~a~~Fl~el~~~Vr~~~PdvilIAE~~s~~p~~~~p~~~gglGFD~~~n 1206 (1276)
|... ....+++++++.+++. +.++++|.+...|....+...++.+|++.|+
T Consensus 167 i~~~----------------------~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (400)
T d1eh9a3 167 IIDT----------------------SPKHILEEIADVVHKY--NRIVIAESDLNDPRVVNPKEKCGYNIDAQWV 217 (400)
T ss_dssp CCCC----------------------SSSCHHHHHHHHHHHT--TCCEEECCCSCCTTTTSCGGGTCCCCSEEEC
T ss_pred hcch----------------------hhhhhHHHHHHHHhhh--hhhhhhhccccCccccchhhhccceeccccc
Confidence 8411 0113788888888764 4577888888888888888778888888776
|
| >d1wzla3 c.1.8.1 (A:121-502) Maltogenic amylase, central domain {Thermoactinomyces vulgaris, TVAII [TaxId: 2026]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Maltogenic amylase, central domain species: Thermoactinomyces vulgaris, TVAII [TaxId: 2026]
Probab=100.00 E-value=2.7e-34 Score=321.65 Aligned_cols=253 Identities=16% Similarity=0.238 Sum_probs=179.1
Q ss_pred CCCCCceEEEEecCCcccc----------------------CccCcHHHHHHhhhhHHHHcCCCCCccceeecccccccc
Q psy9003 891 KKPDNLKIYESHVGICTQE----------------------QKCASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDED 948 (1276)
Q Consensus 891 ~~~~d~vIYElHVr~ft~~----------------------~~~Gtf~gl~ek~LdyLK~LGVna~d~wV~LmP~f~~ee 948 (1276)
.+++++||||+|||+|+.. ...|||+|++++ |||||+||||+ |||||++
T Consensus 6 ~w~~~~viY~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~gi~~k-Ldyl~~lGi~~----I~l~Pv~---- 76 (382)
T d1wzla3 6 EWAKEAVIYQIFPERFANGDPSNDPPGTEQWAKDARPRHDSFYGGDLKGVIDR-LPYLEELGVTA----LYFTPIF---- 76 (382)
T ss_dssp SGGGGCCEEEECGGGTCCCCGGGCCTTCCCCCTTCCCCTTCCCCCCHHHHHHT-HHHHHHHTCCE----EEECCCE----
T ss_pred ccccCCEEEEEEcchhcCCCCCCCCccccccccccccccCCCCCcCHHHHHHh-hHHHHHCCCCE----EEECCcC----
Confidence 3557899999999999631 124999999997 99999999999 9999443
Q ss_pred cccccceeeccCccccccccccccCCCcccCCCccccccccccccccccCCCCCCcccccccccccCCCCCccccccccc
Q psy9003 949 WNMGNIVHTLTNRRYMEKTVAYAESHDQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECH 1028 (1276)
Q Consensus 949 w~~~~pi~~l~~~Pi~E~~i~~~~S~~~~~WGYdp~nyf~~d~~~y~~~S~~~Dp~~~~dap~~~yas~s~hkYt~D~~~ 1028 (1276)
+. ..+|||++.+|+ +++
T Consensus 77 ----------------~~---------~~~~gY~~~~~~---------------------~vd----------------- 93 (382)
T d1wzla3 77 ----------------AS---------PSHHKYDTADYL---------------------AID----------------- 93 (382)
T ss_dssp ----------------EC---------SSSSCCSCSEEE---------------------EEC-----------------
T ss_pred ----------------CC---------CcccCCcccccc---------------------ccc-----------------
Confidence 32 135999999999 555
Q ss_pred cCCCCCCHHHHHHHHHHHHHcCCEEEEEEeccccCCcccCCCcCC----CCCCCcccccCC-------CCCCCCC-----
Q psy9003 1029 KAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEF----DGTQACFFHDGP-------RGTHPLW----- 1092 (1276)
Q Consensus 1029 ID~~~Gt~eEfK~LV~alHk~GI~VILDvV~NHt~~~~~~~~~~f----~g~~~~Yy~~~~-------~g~~~~W----- 1092 (1276)
|++|++++||+||++||++||+||||+|+||++.++++..... ....+.||.... ......|
T Consensus 94 --~~~Gt~~d~~~lv~~~H~~Gi~vilD~V~NH~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (382)
T d1wzla3 94 --PQFGDLPTFRRLVDEAHRRGIKIILDAVFNHAGDQFFAFRDVLQKGEQSRYKDWFFIEDFPVSKTSRTNYETFAVQVP 171 (382)
T ss_dssp --TTTCCHHHHHHHHHHHHTTTCEEEEEECCSBCCTTSHHHHHHHHHGGGCTTGGGBCBSSSSCCCSSCCSBCBSSSSCT
T ss_pred --cCCCCHHHHHHHHHHHHhcccceEeeeeecccccccccccchhhcCccccccccccccccccccCCCCcccccccccc
Confidence 8999999999999999999999999999999998876532110 011122222111 1111111
Q ss_pred CCcCCCCCcHHHHHHHHHHHHHHHHhCCCcEEccCCccccccccCCCCCCCCCCCccccCCCCCchHHHHHHHHHHHHHh
Q psy9003 1093 DSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHD 1172 (1276)
Q Consensus 1093 ~g~~LN~~np~Vr~~Iidsl~~Wv~eygVDGFRfD~a~~L~~~d~g~g~~~~~~~~~~~~~~~d~~a~~Fl~el~~~Vr~ 1172 (1276)
..++||+++|+||++|+++++||++ +||||||+|++.++. ..+|+.+...+++
T Consensus 172 ~~~dLn~~n~~v~~~~~~~~~~w~~-~gvDGfR~D~~~~~~--------------------------~~~~~~~~~~~~~ 224 (382)
T d1wzla3 172 AMPKLRTENPEVKEYLFDVARFWME-QGIDGWRLDVANEVD--------------------------HAFWREFRRLVKS 224 (382)
T ss_dssp TCBBBCTTSHHHHHHHHHHHHHHHH-TTCCEEEETTGGGSC--------------------------HHHHHHHHHHHHH
T ss_pred cCCccCCCCHHHHHHHHHHHHHHHH-cCCCceeecchhhcc--------------------------hhhhhHHHHHHHh
Confidence 1378999999999999999999998 799999999999872 3589999999999
Q ss_pred hCCCeEEEEEccCCCCCCccccccCCcccCcccC-CCccc--------hh-hHHHHHHHHHHHHHhcccCC-CCCeeEee
Q psy9003 1173 KYPEIITIAEDVSGMPASCRPVTEGGTGFDYRLV-SLEGS--------AL-SALFDAAMNTTEERFKWLSA-DPGYVSTK 1241 (1276)
Q Consensus 1173 ~~PdvilIAE~~s~~p~~~~p~~~gglGFD~~~n-~lEes--------aL-S~~F~~~Ln~l~~~~p~L~~-~~~~~l~n 1241 (1276)
.+|++++|||.|...+... .+.+|++.++ .+... .. ...+...........+.-.. ...+++.|
T Consensus 225 ~~p~~~~i~e~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~n 299 (382)
T d1wzla3 225 LNPDALIVGEIWHDASGWL-----MGDQFDSVMNYLFRESVIRFFATGEIHAERFDAELTRARMLYPEQAAQGLWNLLDS 299 (382)
T ss_dssp HCTTCEEEECCSSCCGGGC-----SSSSCSEEBCHHHHHHHHHHHTSCCSCHHHHHHHHHHHHTTSCHHHHTTCEEESCC
T ss_pred hCCceEEeeecccccchhh-----cccccchhhhhhHHHHHHHhhhcCccchhhHHHHHHhhhhcccccccccceeeecC
Confidence 9999999999887665433 3456776666 22100 00 13333333333332221111 12246789
Q ss_pred cCCCeEEE
Q psy9003 1242 HEGDKVII 1249 (1276)
Q Consensus 1242 HD~~RVls 1249 (1276)
||++|+.+
T Consensus 300 HD~~r~~~ 307 (382)
T d1wzla3 300 HDTERFLT 307 (382)
T ss_dssp TTSCCHHH
T ss_pred CCccchHh
Confidence 99999765
|
| >d1qhoa4 c.1.8.1 (A:1-407) Cyclodextrin glycosyltransferase {Bacillus stearothermophilus, maltogenic alpha-amylase [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Cyclodextrin glycosyltransferase species: Bacillus stearothermophilus, maltogenic alpha-amylase [TaxId: 1422]
Probab=100.00 E-value=4.6e-34 Score=324.27 Aligned_cols=267 Identities=16% Similarity=0.216 Sum_probs=183.3
Q ss_pred CCCCCceEEEEecCCcccc-----------------------CccCcHHHHHHhhhhHHHHcCCCCCccceeeccccccc
Q psy9003 891 KKPDNLKIYESHVGICTQE-----------------------QKCASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDE 947 (1276)
Q Consensus 891 ~~~~d~vIYElHVr~ft~~-----------------------~~~Gtf~gl~ek~LdyLK~LGVna~d~wV~LmP~f~~e 947 (1276)
.+++++|||+++|+.|... -..|||+|++++ |||||+||||+ |||||+|+..
T Consensus 4 ~~~~~~v~Y~i~~drF~~gd~~~~~~~~~~~~~~~~~~~~~~~~gGd~~gi~~k-Ldyl~~LGv~~----I~L~Pi~~~~ 78 (407)
T d1qhoa4 4 ASVKGDVIYQIIIDRFYDGDTTNNNPAKSYGLYDPTKSKWKMYWGGDLEGVRQK-LPYLKQLGVTT----IWLSPVLDNL 78 (407)
T ss_dssp SCCTTCCEEEECGGGTCCSCGGGSSCGGGTTCBCTTSCSTTSBCCCCHHHHHHT-HHHHHHHTCCE----EEECCCEEEC
T ss_pred hhhcCCEEEEechhhhcCCCCCCCcccccccccCCcccccCccCCcCHHHHHHH-HHHHHHcCCCE----EEeCccccCC
Confidence 3567899999999998521 013999999996 99999999999 9999766421
Q ss_pred ccccccceeeccCccccccccccccCCCcccCCCccccccccccccccccCCCCCCcccccccccccCCCCCcccccccc
Q psy9003 948 DWNMGNIVHTLTNRRYMEKTVAYAESHDQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDEC 1027 (1276)
Q Consensus 948 ew~~~~pi~~l~~~Pi~E~~i~~~~S~~~~~WGYdp~nyf~~d~~~y~~~S~~~Dp~~~~dap~~~yas~s~hkYt~D~~ 1027 (1276)
. ...+.....+|||++.||+ +++
T Consensus 79 ---------------~-----~~~~~~~~~~~gY~~~d~~---------------------~id---------------- 101 (407)
T d1qhoa4 79 ---------------D-----TLAGTDNTGYHGYWTRDFK---------------------QIE---------------- 101 (407)
T ss_dssp ---------------S-----SCSSTTCCCTTSCSEEEEE---------------------EEC----------------
T ss_pred ---------------c-----ccCCCCCCCCCceeeeecC---------------------CCC----------------
Confidence 0 1111223456888888888 444
Q ss_pred ccCCCCCCHHHHHHHHHHHHHcCCEEEEEEeccccCCcccCCCcCCCCCC--------CcccccC------CCCCCCCCC
Q psy9003 1028 HKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQ--------ACFFHDG------PRGTHPLWD 1093 (1276)
Q Consensus 1028 ~ID~~~Gt~eEfK~LV~alHk~GI~VILDvV~NHt~~~~~~~~~~f~g~~--------~~Yy~~~------~~g~~~~W~ 1093 (1276)
|+||+++|||+||++||++||+||||+|+||++..+.+......+.. ..|+... +.+...+|.
T Consensus 102 ---~~~Gt~~d~k~Lv~~~H~~Gi~VilD~V~NH~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (407)
T d1qhoa4 102 ---EHFGNWTTFDTLVNDAHQNGIKVIVDFVPNHSTPFKANDSTFAEGGALYNNGTYMGNYFDDATKGYFHHNGDISNWD 178 (407)
T ss_dssp ---TTTCCHHHHHHHHHHHHHTTCEEEEEECTTEEEEEBTTBTTSTTTTCEEETTEEEECSSSCTTTCCBCCSCBCSCTT
T ss_pred ---CCCCCHHHHHHHHHHhhhcccceeeccccccccCCccccccccccCcccccCccccccccccccccccccCCCCCcc
Confidence 99999999999999999999999999999999987665432211110 0122111 112233443
Q ss_pred C-----------------cCCCCCcHHHHHHHHHHHHHHHHhCCCcEEccCCccccccccCCCCCCCCCCCccccCCCCC
Q psy9003 1094 S-----------------RLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVD 1156 (1276)
Q Consensus 1094 g-----------------~~LN~~np~Vr~~Iidsl~~Wv~eygVDGFRfD~a~~L~~~d~g~g~~~~~~~~~~~~~~~d 1156 (1276)
. ++||+.+|+||++|++++++|++ +||||||+|++..+.
T Consensus 179 ~~~~~~~~~~~~~~~~~~~dln~~n~~v~~~~~~~~~~w~~-~gvDGfR~D~~~~~~----------------------- 234 (407)
T d1qhoa4 179 DRYEAQWKNFTDPAGFSLADLSQENGTIAQYLTDAAVQLVA-HGADGLRIDAVKHFN----------------------- 234 (407)
T ss_dssp CHHHHHHSBCEETTTEEEEEBCTTSHHHHHHHHHHHHHHHH-TTCCEEEETTGGGSC-----------------------
T ss_pred cccccccccccCCccccCchhhhhhhhHHHHHHHhHHHHhh-hcccccccccccccc-----------------------
Confidence 1 57999999999999999999996 899999999998772
Q ss_pred chHHHHHHHHHHHHHhhCCCeEEEEEccCCCCCCccccccC-------CcccCcccC-CCccchh------hHHHHHHHH
Q psy9003 1157 TDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEG-------GTGFDYRLV-SLEGSAL------SALFDAAMN 1222 (1276)
Q Consensus 1157 ~~a~~Fl~el~~~Vr~~~PdvilIAE~~s~~p~~~~p~~~g-------glGFD~~~n-~lEesaL------S~~F~~~Ln 1222 (1276)
..||+++++.+++. |+++++||.|+..|.+....... ...+++.+. .+. ..+ ...+...++
T Consensus 235 ---~~f~~~~~~~i~~~-~~~~~~gE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~ 309 (407)
T d1qhoa4 235 ---SGFSKSLADKLYQK-KDIFLVGEWYGDDPGTANHLEKVRYANNSGVNVLDFDLNTVIR-NVFGTFTQTMYDLNNMVN 309 (407)
T ss_dssp ---HHHHHHHHHHHHHH-CCCEEEECCCCCCTTSTTHHHHHHHHHHSSCEEBCHHHHHHHH-HHHTSCSSCHHHHHHHHH
T ss_pred ---hhHHHHHHHHHHhc-cCcceeeeecCCChhhhHHHHhhccccccccceehhhHHHHHH-HHhhhcchhhhHHHHHHH
Confidence 35899999999874 88999999999888776543311 111222111 000 000 144555555
Q ss_pred HHHHHhcccCCCCCeeEeecCCCeEEEEEc
Q psy9003 1223 TTEERFKWLSADPGYVSTKHEGDKVIIFER 1252 (1276)
Q Consensus 1223 ~l~~~~p~L~~~~~~~l~nHD~~RVlsf~R 1252 (1276)
+.....+. ......++.|||++|+++...
T Consensus 310 ~~~~~~~~-~~~~~~f~~nHD~~R~~~~~~ 338 (407)
T d1qhoa4 310 QTGNEYKY-KENLITFIDNHDMSRFLSVNS 338 (407)
T ss_dssp HHHHHCTT-GGGCEECSCCTTSCCHHHHCC
T ss_pred Hhhhcccc-chhhceecccCCccccccccC
Confidence 55544432 122234577999999877544
|
| >d2guya2 c.1.8.1 (A:1-381) Fungal alpha-amylases {Aspergillus oryzae, Taka-amylase [TaxId: 5062]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Fungal alpha-amylases species: Aspergillus oryzae, Taka-amylase [TaxId: 5062]
Probab=100.00 E-value=9.6e-35 Score=328.85 Aligned_cols=260 Identities=17% Similarity=0.173 Sum_probs=179.7
Q ss_pred CCCceEEEEecCCccccC--------------ccCcHHHHHHhhhhHHHHcCCCCCccceeecccccccccccccceeec
Q psy9003 893 PDNLKIYESHVGICTQEQ--------------KCASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTL 958 (1276)
Q Consensus 893 ~~d~vIYElHVr~ft~~~--------------~~Gtf~gl~ek~LdyLK~LGVna~d~wV~LmP~f~~eew~~~~pi~~l 958 (1276)
|++.+|||++||.|+... ..|||+|++++ |||||+||||+ |||||+++..
T Consensus 6 W~~~~iY~i~~~~F~~~~~~~~~~~~~~~~~~~gGd~~gi~~~-Ldyl~~LGv~~----I~L~Pi~~~~----------- 69 (381)
T d2guya2 6 WRSQSIYFLLTDRFARTDGSTTATCNTADQKYCGGTWQGIIDK-LDYIQGMGFTA----IWITPVTAQL----------- 69 (381)
T ss_dssp HTTCCEEEECHHHHCBTTCCSSCCCCGGGTCCCCBCHHHHHHT-HHHHHTTTCCE----EEECCCEEEC-----------
T ss_pred ccCCeEEEEEcchhcCCCCCCCCCCCCccCccCCcCHHHHHHh-HHHHHHCCCCE----EEeCCCCCCC-----------
Confidence 456789999999997421 12999999996 99999999999 9999766420
Q ss_pred cCccccccccccccCCCcccCCCccccccccccccccccCCCCCCcccccccccccCCCCCccccccccccCCCCCCHHH
Q psy9003 959 TNRRYMEKTVAYAESHDQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQ 1038 (1276)
Q Consensus 959 ~~~Pi~E~~i~~~~S~~~~~WGYdp~nyf~~d~~~y~~~S~~~Dp~~~~dap~~~yas~s~hkYt~D~~~ID~~~Gt~eE 1038 (1276)
|. .......+|||++.+|+ +++ |++|+.+|
T Consensus 70 ---~~-------~~~~~~~~~gY~~~d~~---------------------~vd-------------------~~~Gt~~d 99 (381)
T d2guya2 70 ---PQ-------TTAYGDAYHGYWQQDIY---------------------SLN-------------------ENYGTADD 99 (381)
T ss_dssp ---CC-------CBTTBCCTTSCSEEEEE---------------------EEC-------------------TTSCCHHH
T ss_pred ---cc-------cCCCCCCCCCccccccc---------------------ccc-------------------cCCCCHHH
Confidence 00 00112346899988888 444 89999999
Q ss_pred HHHHHHHHHHcCCEEEEEEeccccCCcccCCCc---CCCCCC-CcccccCCCCCCCCC----------------CCcCCC
Q psy9003 1039 LKYLVDECHKAGLYVLLDVVHSHASKNVLDGLN---EFDGTQ-ACFFHDGPRGTHPLW----------------DSRLFN 1098 (1276)
Q Consensus 1039 fK~LV~alHk~GI~VILDvV~NHt~~~~~~~~~---~f~g~~-~~Yy~~~~~g~~~~W----------------~g~~LN 1098 (1276)
||+||++||++||+||||+|+||++.++.+... .|.... ..||+.. +...+| +.++||
T Consensus 100 fk~lv~~~H~~Gi~VilD~V~NH~s~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~dln 177 (381)
T d2guya2 100 LKALSSALHERGMYLMVDVVANHMGYDGAGSSVDYSVFKPFSSQDYFHPF--CFIQNYEDQTQVEDCWLGDNTVSLPDLD 177 (381)
T ss_dssp HHHHHHHHHHTTCEEEEEECCSBCCEEBCGGGCCGGGSBSCCSGGGBCCS--CBCCCTTCHHHHHHSBEECSSEEECBBC
T ss_pred HHHHHHHHHhhccceeeeccccccccccCcccccccccCCCCcccceecc--ccccccccccccceeeccCCccccchhc
Confidence 999999999999999999999999987754321 122211 2233221 111111 136899
Q ss_pred CCcHHHHHHHHHHHHHHHHhCCCcEEccCCccccccccCCCCCCCCCCCccccCCCCCchHHHHHHHHHHHHHhhCCCeE
Q psy9003 1099 YSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEII 1178 (1276)
Q Consensus 1099 ~~np~Vr~~Iidsl~~Wv~eygVDGFRfD~a~~L~~~d~g~g~~~~~~~~~~~~~~~d~~a~~Fl~el~~~Vr~~~Pdvi 1178 (1276)
+++|+||+++++++++|+.++||||||+|++.++. ..||+.+++. |+++
T Consensus 178 ~~n~~v~~~~~~~~~~w~~~~giDGfR~D~~~~~~--------------------------~~f~~~~~~~-----~~~~ 226 (381)
T d2guya2 178 TTKDVVKNEWYDWVGSLVSNYSIDGLRIDTVKHVQ--------------------------KDFWPGYNKA-----AGVY 226 (381)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHTCCEEEETTGGGSC--------------------------GGGHHHHHHH-----HTSE
T ss_pred cccHHHHHHHHHHhhhccccccccceeeehHhhcC--------------------------HHHHHhhhhc-----ceee
Confidence 99999999999999999999999999999998873 2378777653 6889
Q ss_pred EEEEccCCCCCCccccccC-CcccCcccC-CC----ccchh-hHHHHHHHHHHHHHhcccCCCCCeeEeecCCCeEEEEE
Q psy9003 1179 TIAEDVSGMPASCRPVTEG-GTGFDYRLV-SL----EGSAL-SALFDAAMNTTEERFKWLSADPGYVSTKHEGDKVIIFE 1251 (1276)
Q Consensus 1179 lIAE~~s~~p~~~~p~~~g-glGFD~~~n-~l----EesaL-S~~F~~~Ln~l~~~~p~L~~~~~~~l~nHD~~RVlsf~ 1251 (1276)
+|||.|...+..+.+.... ...||+.+. .+ ..... ...+...+..+...+|. ......++.|||++|+.+..
T Consensus 227 ~igE~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~f~enHD~~R~~s~~ 305 (381)
T d2guya2 227 CIGEVLDGDPAYTCPYQNVMDGVLNYPIYYPLLNAFKSTSGSMDDLYNMINTVKSDCPD-STLLGTFVENHDNPRFASYT 305 (381)
T ss_dssp EEECCCCSCHHHHGGGGGTSSEEBCHHHHHHHHHHHSSTTCCHHHHHHHHHHHHHHSSC-GGGSEECSCCTTSCCGGGTC
T ss_pred eeeecccccHhhhccccccccceecchhHHHHHHHHhccCCchHHHHHHHHHHHhhcCc-cccceeeccCcCcccccccc
Confidence 9999998877665544321 122443322 11 00000 14556666666666653 12223567899999988755
Q ss_pred c
Q psy9003 1252 R 1252 (1276)
Q Consensus 1252 R 1252 (1276)
+
T Consensus 306 ~ 306 (381)
T d2guya2 306 N 306 (381)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >d1m53a2 c.1.8.1 (A:43-520) Isomaltulose synthase PalI {Klebsiella sp., lx3 [TaxId: 576]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Isomaltulose synthase PalI species: Klebsiella sp., lx3 [TaxId: 576]
Probab=100.00 E-value=4.1e-34 Score=328.83 Aligned_cols=282 Identities=15% Similarity=0.186 Sum_probs=184.6
Q ss_pred CCCCceEEEEecCCccc--cCccCcHHHHHHhhhhHHHHcCCCCCccceeecccccccccccccceeeccCccccccccc
Q psy9003 892 KPDNLKIYESHVGICTQ--EQKCASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVA 969 (1276)
Q Consensus 892 ~~~d~vIYElHVr~ft~--~~~~Gtf~gl~ek~LdyLK~LGVna~d~wV~LmP~f~~eew~~~~pi~~l~~~Pi~E~~i~ 969 (1276)
+++++||||+||++|++ ....|+|+|++++ |||||+||||+ |||||+|+ .
T Consensus 5 W~~~~viYei~~~~F~d~~~~~~Gd~~Gi~~k-LdyLk~LGv~~----I~L~Pi~~--------------------~--- 56 (478)
T d1m53a2 5 WWKEAVFYQIYPRSFKDTNDDGIGDIRGIIEK-LDYLKSLGIDA----IWINPHYD--------------------S--- 56 (478)
T ss_dssp HHHHCCEEEECGGGTCCSSSSSSCCHHHHHHT-HHHHHHHTCCE----EEECCCEE--------------------C---
T ss_pred ccccCeEEEEecchhcCCCCCCccCHHHHHHh-hHHHHHcCCCE----EEECCCCC--------------------C---
Confidence 45789999999999975 4567999999996 99999999999 99995443 2
Q ss_pred cccCCCcccCCCccccccccccccccccCCCCCCcccccccccccCCCCCccccccccccCCCCCCHHHHHHHHHHHHHc
Q psy9003 970 YAESHDQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKA 1049 (1276)
Q Consensus 970 ~~~S~~~~~WGYdp~nyf~~d~~~y~~~S~~~Dp~~~~dap~~~yas~s~hkYt~D~~~ID~~~Gt~eEfK~LV~alHk~ 1049 (1276)
+..+|||++.||| +++ |+||+++|||+||++||++
T Consensus 57 -----~~~~~GY~~~d~~---------------------~vd-------------------~~~Gt~~df~~Lv~~aH~~ 91 (478)
T d1m53a2 57 -----PNTDNGYDISNYR---------------------QIM-------------------KEYGTMEDFDSLVAEMKKR 91 (478)
T ss_dssp -----CCTTTTSSCSEEE---------------------EEC-------------------GGGCCHHHHHHHHHHHHHT
T ss_pred -----CCCCCCcCccCCC---------------------CcC-------------------cccCCHHHHHHHHHHHHHC
Confidence 1246999999999 555 8899999999999999999
Q ss_pred CCEEEEEEeccccCCcccCCCcCCC-CCC--Cccc--ccC---------------------C-CCC-CC---CCCCcCCC
Q psy9003 1050 GLYVLLDVVHSHASKNVLDGLNEFD-GTQ--ACFF--HDG---------------------P-RGT-HP---LWDSRLFN 1098 (1276)
Q Consensus 1050 GI~VILDvV~NHt~~~~~~~~~~f~-g~~--~~Yy--~~~---------------------~-~g~-~~---~W~g~~LN 1098 (1276)
||+||||+|+||++..++++..... ... ..|| ... . .+. +. ....+++|
T Consensus 92 Gi~VilD~V~NH~~~~~~~f~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln 171 (478)
T d1m53a2 92 NMRLMIDVVINHTSDQHPWFIQSKSDKNNPYRDYYFWRDGKDNQPPNNYPSFFGGSAWQKDAKSGQYYLHYFARQQPDLN 171 (478)
T ss_dssp TCEEEEEECCSBCCTTSHHHHHHHHCTTCTTGGGBCEECCSSSSCSSCCBCTTSSBSEEECTTTCCEEECSSCTTCCBBC
T ss_pred CCEEEeccccccccccCchhhhcccCCCCCccccccccCCCcCCCCccccccCCCCccccccccCcccccCcCCCCCccc
Confidence 9999999999999988754321100 000 0111 000 0 000 00 11247899
Q ss_pred CCcHHHHHHHHHHHHHHHHhCCCcEEccCCccccccccCCCCCCCCCCCccccCC--CCCchHHHHHHHHHHHHHhhCCC
Q psy9003 1099 YSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGL--NVDTDALIYLMVANKFLHDKYPE 1176 (1276)
Q Consensus 1099 ~~np~Vr~~Iidsl~~Wv~eygVDGFRfD~a~~L~~~d~g~g~~~~~~~~~~~~~--~~d~~a~~Fl~el~~~Vr~~~Pd 1176 (1276)
+.+|+|+++|++++++|+ ++||||||+|++..+... .+. ..+.......+.. ........++++++..+.. .++
T Consensus 172 ~~~~~V~~~i~~~~~~w~-e~gvDGfR~D~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 247 (478)
T d1m53a2 172 WDNPKVREDLYAMLRFWL-DKGVSGMRFDTVATYSKI-PGF-PNLTPEQQKNFAEQYTMGPNIHRYIQEMNRKVLS-RYD 247 (478)
T ss_dssp TTSHHHHHHHHHHHHHHH-TTTCCEEEETTGGGSSCC-TTC-CCCCHHHHHTHHHHTTCCTTHHHHHHHHHHHTGG-GSC
T ss_pred chhHHHHHHHHHHHHHHH-hcCCceeccccceeeccc-ccc-cccchhhhhccchhhccchhHHHHHHHHHHHHhh-ccc
Confidence 999999999999999999 589999999999988422 110 0000000000000 1123345688888877755 468
Q ss_pred eEEEEEccCCCCCCcccccc-----CCcccCcccCCC--c------cchh-hHHHHHHHHHHHHHhcccCCCCCeeEeec
Q psy9003 1177 IITIAEDVSGMPASCRPVTE-----GGTGFDYRLVSL--E------GSAL-SALFDAAMNTTEERFKWLSADPGYVSTKH 1242 (1276)
Q Consensus 1177 vilIAE~~s~~p~~~~p~~~-----gglGFD~~~n~l--E------esaL-S~~F~~~Ln~l~~~~p~L~~~~~~~l~nH 1242 (1276)
..+++|.+.........+.. ...+|++.+... . .... ...+...+.......+. ..+..+.+.||
T Consensus 248 ~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~nh 326 (478)
T d1m53a2 248 VATAGEIFGVPLDRSSQFFDRRRHELNMAFMFDLIRLDRDSNERWRHKSWSLSQFRQIISKMDVTVGK-YGWNTFFLDNH 326 (478)
T ss_dssp CEEEEECTTCCGGGTHHHHCGGGCSCSEEECCTTTTTTBCSSCTTCBCCCCHHHHHHHHHHHHHHHTT-TCCBEECSCCT
T ss_pred cceeeeecCCCHHHHHhhhcccCCccccccchhhhhhhhhhhhhhccccccHHHHHHHHHHHHhhhcc-cccceeeccCC
Confidence 89999988765443322211 122333333211 0 0011 15566666666665553 33455678899
Q ss_pred CCCeEEEEE
Q psy9003 1243 EGDKVIIFE 1251 (1276)
Q Consensus 1243 D~~RVlsf~ 1251 (1276)
|++|+.+..
T Consensus 327 d~~R~~~~~ 335 (478)
T d1m53a2 327 DNPRAVSHF 335 (478)
T ss_dssp TSCCHHHHH
T ss_pred CCccccccc
Confidence 999987643
|
| >d1bf2a3 c.1.8.1 (A:163-637) Isoamylase, central domain {Pseudomonas amyloderamosa [TaxId: 32043]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Isoamylase, central domain species: Pseudomonas amyloderamosa [TaxId: 32043]
Probab=100.00 E-value=4.9e-34 Score=328.46 Aligned_cols=192 Identities=19% Similarity=0.250 Sum_probs=143.2
Q ss_pred CCC-CCCCceEEEEecCCccc------cCccCcHHHHHHhhhhHHHHcCCCCCccceeecccccccccccccceeeccCc
Q psy9003 889 KPK-KPDNLKIYESHVGICTQ------EQKCASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNR 961 (1276)
Q Consensus 889 rp~-~~~d~vIYElHVr~ft~------~~~~Gtf~gl~ek~LdyLK~LGVna~d~wV~LmP~f~~eew~~~~pi~~l~~~ 961 (1276)
+|+ +++|+||||+|||+|++ ...+|||+|++++ ||||++||||+ |||||+++...-..
T Consensus 9 ~~~~~~~d~viYei~v~~f~~~~~~~~~~~~Gd~~Gi~~k-Ldyl~~LGvna----iwl~Pi~~~~~~~~---------- 73 (475)
T d1bf2a3 9 KPTRAQKDDVIYEVHVRGFTEQDTSIPAQYRGTYYGAGLK-ASYLASLGVTA----VEFLPVQETQNDAN---------- 73 (475)
T ss_dssp CCCCCGGGCCEEEECHHHHHTTCTTSCGGGTTSHHHHHHT-HHHHHHHTCCE----EEESCCBCBSCTTT----------
T ss_pred CCCCCCcceEEEEEEhhHhccCCCCCCccccCCHHHHHhh-hHHHHHcCCCE----EEeCCCCcCCCccc----------
Confidence 453 45899999999999975 3567999999996 99999999999 99998776421100
Q ss_pred cccccccccccCCCcccCCCccccccccccccccccCCCCCCcccccccccccCCCCCccccccccccCCCCCCHHHHHH
Q psy9003 962 RYMEKTVAYAESHDQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKY 1041 (1276)
Q Consensus 962 Pi~E~~i~~~~S~~~~~WGYdp~nyf~~d~~~y~~~S~~~Dp~~~~dap~~~yas~s~hkYt~D~~~ID~~~Gt~eEfK~ 1041 (1276)
.. .........+|||++.||+ ++++.|++.. ...|+.+|||+
T Consensus 74 ~~-----~~~~~~~~~y~GY~~~d~~---------------------~vdp~y~~~~------------~~~Gt~~d~~~ 115 (475)
T d1bf2a3 74 DV-----VPNSDANQNYWGYMTENYF---------------------SPDRRYAYNK------------AAGGPTAEFQA 115 (475)
T ss_dssp TS-----STTCCTTCCCSCCCBSCSS---------------------CBCGGGCSCC------------STTHHHHHHHH
T ss_pred cc-----ccccccCcCCCCCCcccCC---------------------CcCcccccCC------------CCCCCHHHHHH
Confidence 00 0111234678999999999 6665565431 45699999999
Q ss_pred HHHHHHHcCCEEEEEEeccccCCcccCCCcCCCCCC---------CcccccCCCCCCCC----CCCcCCCCCcHHHHHHH
Q psy9003 1042 LVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQ---------ACFFHDGPRGTHPL----WDSRLFNYSEIEVLRFL 1108 (1276)
Q Consensus 1042 LV~alHk~GI~VILDvV~NHt~~~~~~~~~~f~g~~---------~~Yy~~~~~g~~~~----W~g~~LN~~np~Vr~~I 1108 (1276)
||++||++||+||||+|+||++..++|....-.... ..+|... .+.... +..++||+.||+|++++
T Consensus 116 LV~~aH~~GIrVilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~dln~~np~V~~~~ 194 (475)
T d1bf2a3 116 MVQAFHNAGIKVYMDVVYNHTAEGGTWTSSDPTTATIYSWRGLDNATYYELT-SGNQYFYDNTGIGANFNTYNTVAQNLI 194 (475)
T ss_dssp HHHHHHHTTCEEEEEECCSSCTTCSBSSSSCSSCBBCSSHHHHHHHHHBCBC-TTSSSBCCSSSSSCCBCTTSHHHHHHH
T ss_pred HHHHHHhcCcEEEEEeccccccCCCcccccCCCcCccccccCcccccccccC-CCccccccCCCccCccchhhhHHHHHH
Confidence 999999999999999999999998876532111000 0112211 222111 12578999999999999
Q ss_pred HHHHHHHHHhCCCcEEccCCcccccc
Q psy9003 1109 LSNLRWYLDEYQFDGFRFDGVTSMLY 1134 (1276)
Q Consensus 1109 idsl~~Wv~eygVDGFRfD~a~~L~~ 1134 (1276)
++++++|++++||||||+|++..|..
T Consensus 195 ~~~~~~w~~~~gvDGfR~D~~~~~~~ 220 (475)
T d1bf2a3 195 VDSLAYWANTMGVDGFRFDLASVLGN 220 (475)
T ss_dssp HHHHHHHHHTSCCCEEEETTGGGGGB
T ss_pred HHHHHhhhhhcCCceEEEehHhhhch
Confidence 99999999999999999999999964
|
| >d1wzaa2 c.1.8.1 (A:28-436) Bacterial alpha-amylase {Halothermothrix orenii [TaxId: 31909]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Bacterial alpha-amylase species: Halothermothrix orenii [TaxId: 31909]
Probab=100.00 E-value=9.9e-34 Score=317.11 Aligned_cols=260 Identities=17% Similarity=0.255 Sum_probs=179.6
Q ss_pred CCceEEEEecCCcccc--CccCcHHHHHHhhhhHH--------HHcCCCCCccceeecccccccccccccceeeccCccc
Q psy9003 894 DNLKIYESHVGICTQE--QKCASYEDFVRVVIPRI--------VKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRY 963 (1276)
Q Consensus 894 ~d~vIYElHVr~ft~~--~~~Gtf~gl~ek~LdyL--------K~LGVna~d~wV~LmP~f~~eew~~~~pi~~l~~~Pi 963 (1276)
+++||||+|||+|++. ...|||+|++++ |||| |+||||+ |||||++
T Consensus 3 k~~v~Y~~~~~~f~d~~~~~~Gd~~g~~~k-Ldyl~~~~~~~i~~LGv~~----i~l~Pi~------------------- 58 (409)
T d1wzaa2 3 KHGTYYEIFVRSFYDSDGDGIGDLKGIIEK-LDYLNDGDPETIADLGVNG----IWLMPIF------------------- 58 (409)
T ss_dssp CCCCEEEECGGGSCCSSSSSCCCHHHHHHT-HHHHCCSCTTCCSSCCCSE----EEECCCE-------------------
T ss_pred CccEEEEEecchhcCCCCCCCcCHHHHHHh-ccccccccccHHhhcCccE----EEECCCC-------------------
Confidence 4789999999999863 456999999996 9998 7999999 9999443
Q ss_pred cccccccccCCCcccCCCccccccccccccccccCCCCCCcccccccccccCCCCCccccccccccCCCCCCHHHHHHHH
Q psy9003 964 MEKTVAYAESHDQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLV 1043 (1276)
Q Consensus 964 ~E~~i~~~~S~~~~~WGYdp~nyf~~d~~~y~~~S~~~Dp~~~~dap~~~yas~s~hkYt~D~~~ID~~~Gt~eEfK~LV 1043 (1276)
+. ..+|||+|.+|+ +++ |+||+.+|||+||
T Consensus 59 -~~---------~~~~GY~~~d~~---------------------~vd-------------------~~~G~~~dlk~lv 88 (409)
T d1wzaa2 59 -KS---------PSYHGYDVTDYY---------------------KIN-------------------PDYGTLEDFHKLV 88 (409)
T ss_dssp -EC---------SSSSCCSCSEEE---------------------EEC-------------------GGGCCHHHHHHHH
T ss_pred -CC---------CCCCCcCcccCC---------------------CcC-------------------cccCCHHHHHHHH
Confidence 22 235999999999 454 8899999999999
Q ss_pred HHHHHcCCEEEEEEeccccCCcccCCC---cCCCCCCCccccc-CCCCC---------------------CCCCC-CcCC
Q psy9003 1044 DECHKAGLYVLLDVVHSHASKNVLDGL---NEFDGTQACFFHD-GPRGT---------------------HPLWD-SRLF 1097 (1276)
Q Consensus 1044 ~alHk~GI~VILDvV~NHt~~~~~~~~---~~f~g~~~~Yy~~-~~~g~---------------------~~~W~-g~~L 1097 (1276)
++||++||+||||+|+||++.++++.. ..+......||.. +++.. ...|. .++|
T Consensus 89 ~~~H~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dl 168 (409)
T d1wzaa2 89 EAAHQRGIKVIIDLPINHTSERHPWFLKASRDKNSEYRDYYVWAGPDTDTKETKLDGGRVWHYSPTGMYYGYFWSGMPDL 168 (409)
T ss_dssp HHHHHTTCEEEEECCCSBCCTTSHHHHHHHTCTTCTTGGGBCBCCSCCCCCBCSSSCBCSEEEETTEEEECSSCTTSCBB
T ss_pred HHHHhcCCEEEEecccccccccCcchhhhhccccccccccccccccccccCccccCCCccccccccccccccCCCCCccc
Confidence 999999999999999999999875432 1112112223221 11110 11222 4789
Q ss_pred CCCcHHHHHHHHHHHHHHHHhCCCcEEccCCccccccccCCCCCCCCCCCccccCCCCCchHHHHHHHHHHHHHhhCCCe
Q psy9003 1098 NYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEI 1177 (1276)
Q Consensus 1098 N~~np~Vr~~Iidsl~~Wv~eygVDGFRfD~a~~L~~~d~g~g~~~~~~~~~~~~~~~d~~a~~Fl~el~~~Vr~~~Pdv 1177 (1276)
|+.+|+||++|++++++|++ +||||||||++..+... ........||+++++.+++..| .
T Consensus 169 n~~n~~vr~~~~~~~~~wi~-~gVDGfR~D~~~~i~~~------------------~~~~~~~~~~~~~~~~~~~~~~-~ 228 (409)
T d1wzaa2 169 NYNNPEVQEKVIGIAKYWLK-QGVDGFRLDGAMHIFPP------------------AQYDKNFTWWEKFRQEIEEVKP-V 228 (409)
T ss_dssp CTTSHHHHHHHHHHHHHHHH-TTCCEEEEECCCTTSCG------------------GGTTHHHHHHHHHHHHHTTTSC-C
T ss_pred ccccHHHHHHHHHHHHHHHH-cCCCeecccchhhcccc------------------hhccchhHHHHHHHHhhccCCC-c
Confidence 99999999999999999998 59999999999987311 1123467899999999987665 8
Q ss_pred EEEEEccCCCCCCccccccCCcccCcccC-CCccc-------hhhHHHHHHHHHH----HHHhcccCCCCCeeEeecCCC
Q psy9003 1178 ITIAEDVSGMPASCRPVTEGGTGFDYRLV-SLEGS-------ALSALFDAAMNTT----EERFKWLSADPGYVSTKHEGD 1245 (1276)
Q Consensus 1178 ilIAE~~s~~p~~~~p~~~gglGFD~~~n-~lEes-------aLS~~F~~~Ln~l----~~~~p~L~~~~~~~l~nHD~~ 1245 (1276)
++++|.|....... +. .+.||+..|+ .+... .....+...+..+ .+...........++.|||++
T Consensus 229 ~~~~E~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~nhD~~ 305 (409)
T d1wzaa2 229 YLVGEVWDISETVA-PY--FKYGFDSTFNFKLAEAVIATAKAGFPFGFNKKAKHIYGVYDREVGFGNYIDAPFLTNHDQN 305 (409)
T ss_dssp EEEEECCSCHHHHG-GG--GTTTCSEEBCHHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHTCTTSCCCBCBSCCTTSC
T ss_pred EEEEEeecCccchh-hh--hhcccccchhhhHHHHHHHHHhccCccchHHHHHHHHHhhhhhhccccccccccccccccC
Confidence 89999876443322 22 2467887777 22100 0012222222222 222222122234567899999
Q ss_pred eEEEE
Q psy9003 1246 KVIIF 1250 (1276)
Q Consensus 1246 RVlsf 1250 (1276)
|+.+.
T Consensus 306 r~~~~ 310 (409)
T d1wzaa2 306 RILDQ 310 (409)
T ss_dssp CHHHH
T ss_pred ccccc
Confidence 98763
|
| >d1uoka2 c.1.8.1 (A:1-479) Oligo-1,6, glucosidase {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Oligo-1,6, glucosidase species: Bacillus cereus [TaxId: 1396]
Probab=100.00 E-value=2.6e-33 Score=322.25 Aligned_cols=281 Identities=15% Similarity=0.173 Sum_probs=181.8
Q ss_pred CCCCceEEEEecCCccc--cCccCcHHHHHHhhhhHHHHcCCCCCccceeecccccccccccccceeeccCccccccccc
Q psy9003 892 KPDNLKIYESHVGICTQ--EQKCASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVA 969 (1276)
Q Consensus 892 ~~~d~vIYElHVr~ft~--~~~~Gtf~gl~ek~LdyLK~LGVna~d~wV~LmP~f~~eew~~~~pi~~l~~~Pi~E~~i~ 969 (1276)
+++++||||+||+.|++ ....|+|+|++++ |||||+||||+ |||||+| +.
T Consensus 5 W~~~~viYei~~~~F~d~~~~~~Gd~~gi~~k-LdYLk~LGv~~----I~l~Pi~--------------------~~--- 56 (479)
T d1uoka2 5 WWKESVVYQIYPRSFMDSNGDGIGDLRGIISK-LDYLKELGIDV----IWLSPVY--------------------ES--- 56 (479)
T ss_dssp HHHHCCEEEECGGGTCCSSSSSSCCHHHHHTT-HHHHHHHTCCE----EEECCCE--------------------EC---
T ss_pred hhccCeEEEEEcchhcCCCCCCCcCHHHHHHh-hHHHHHcCCCE----EEECCCc--------------------CC---
Confidence 35789999999999975 3567999999996 99999999999 9999544 32
Q ss_pred cccCCCcccCCCccccccccccccccccCCCCCCcccccccccccCCCCCccccccccccCCCCCCHHHHHHHHHHHHHc
Q psy9003 970 YAESHDQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKA 1049 (1276)
Q Consensus 970 ~~~S~~~~~WGYdp~nyf~~d~~~y~~~S~~~Dp~~~~dap~~~yas~s~hkYt~D~~~ID~~~Gt~eEfK~LV~alHk~ 1049 (1276)
+..+|||++.||+ +++ |+||++++||+||++||++
T Consensus 57 -----~~~~~GY~~~d~~---------------------~vd-------------------~~~Gt~~df~~Lv~~aH~~ 91 (479)
T d1uoka2 57 -----PNDDNGYDISDYC---------------------KIM-------------------NEFGTMEDWDELLHEMHER 91 (479)
T ss_dssp -----CCTTTTSSCSEEE---------------------EEC-------------------GGGCCHHHHHHHHHHHHHT
T ss_pred -----CCCCCCcCccccC---------------------CcC-------------------cccCCHHHHHHHHHHHHHC
Confidence 1246999999999 555 8899999999999999999
Q ss_pred CCEEEEEEeccccCCcccCCCcCC---CCCCC-cc-cccCCCCC-----------------------CC---CCCCcCCC
Q psy9003 1050 GLYVLLDVVHSHASKNVLDGLNEF---DGTQA-CF-FHDGPRGT-----------------------HP---LWDSRLFN 1098 (1276)
Q Consensus 1050 GI~VILDvV~NHt~~~~~~~~~~f---~g~~~-~Y-y~~~~~g~-----------------------~~---~W~g~~LN 1098 (1276)
||+||||+|+||++.++.++.... +.... .| +....++. +. ....+++|
T Consensus 92 Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln 171 (479)
T d1uoka2 92 NMKLMMDLVVNHTSDEHNWFIESRKSKDNKYRDYYIWRPGKEGKEPNNWGAAFSGSAWQYDEMTDEYYLHLFSKKQPDLN 171 (479)
T ss_dssp TCEEEEEECCSBCCTTSHHHHHHTTCTTCTTGGGBCEECCSSSSCSSCBBCTTSSBSEEEETTTTEEEECSSCTTSCBBC
T ss_pred CCEEEecccccccccccchhhhhhhccCCccccceeccccccCcCcCCccccCCCCccccccccCcceecccCCCccccc
Confidence 999999999999999875532111 11111 11 11111100 00 01247899
Q ss_pred CCcHHHHHHHHHHHHHHHHhCCCcEEccCCccccccccCCCCCCCCCCCccccCC---CCCchHHHHHHHHHHHHHhhCC
Q psy9003 1099 YSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGL---NVDTDALIYLMVANKFLHDKYP 1175 (1276)
Q Consensus 1099 ~~np~Vr~~Iidsl~~Wv~eygVDGFRfD~a~~L~~~d~g~g~~~~~~~~~~~~~---~~d~~a~~Fl~el~~~Vr~~~P 1175 (1276)
+.+|+||++|++++++|++ +||||||+|++..|... .+.............+. ...++...+++++++.+.. .+
T Consensus 172 ~~~~~v~~~i~~~~~~W~e-~gvDGfR~D~~~~i~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 248 (479)
T d1uoka2 172 WDNEKVRQDVYEMMKFWLE-KGIDGFRMDVINFISKE-EGLPTVETEEEGYVSGHKHFMNGPNIHKYLHEMNEEVLS-HY 248 (479)
T ss_dssp TTSHHHHHHHHHHHHHHHH-TTCCEEEETTGGGSCCC-TTCCCCCCCCSSCBCCGGGTTTCTTHHHHHHHHHHHTGG-GS
T ss_pred cCCHHHHHHHHHHHHHHHH-cCCCCcccccceeeecc-ccCcccccccccccccchhhccChhHHHHHHHHHHHHHh-cC
Confidence 9999999999999999976 89999999999988422 11110000000011111 1123456778888877755 56
Q ss_pred CeEEEEEccCCCCCCcccccc-CC----cccCcccCCCccc--------hh-hHHHHHHHHHHHHHhcccCCCCCeeEee
Q psy9003 1176 EIITIAEDVSGMPASCRPVTE-GG----TGFDYRLVSLEGS--------AL-SALFDAAMNTTEERFKWLSADPGYVSTK 1241 (1276)
Q Consensus 1176 dvilIAE~~s~~p~~~~p~~~-gg----lGFD~~~n~lEes--------aL-S~~F~~~Ln~l~~~~p~L~~~~~~~l~n 1241 (1276)
+..+++|.+...+.....+.. .. ..|++........ .. ...+...+......++. ......++.|
T Consensus 249 ~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~n 327 (479)
T d1uoka2 249 DIMTVGEMPGVTTEEAKLYTGEERKELQMVFQFEHMDLDSGEGGKWDVKPCSLLTLKENLTKWQKALEH-TGWNSLYWNN 327 (479)
T ss_dssp CCEEEEECTTCCHHHHHHHHCGGGCSCSCEECCGGGSTTEETTEEEEECCCCHHHHHHHHHHHHHHTSS-SSCCEECSCC
T ss_pred ccceeecccCCchHhhhhhccCCCcccccccCcccchhhhhccCcccccchhhhHHhhhHHHHhhhccc-ccccceeccc
Confidence 788999987665443322221 11 1222222211100 00 13444555555555553 2344467789
Q ss_pred cCCCeEEE
Q psy9003 1242 HEGDKVII 1249 (1276)
Q Consensus 1242 HD~~RVls 1249 (1276)
||++|+.+
T Consensus 328 hd~~~~~~ 335 (479)
T d1uoka2 328 HDQPRVVS 335 (479)
T ss_dssp TTSCCHHH
T ss_pred cccccccc
Confidence 99999766
|
| >d2aaaa2 c.1.8.1 (A:1-381) Fungal alpha-amylases {Aspergillus niger, acid amylase [TaxId: 5061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Fungal alpha-amylases species: Aspergillus niger, acid amylase [TaxId: 5061]
Probab=100.00 E-value=8.5e-34 Score=321.40 Aligned_cols=257 Identities=19% Similarity=0.204 Sum_probs=174.9
Q ss_pred CCCceEEEEecCCcccc--------------CccCcHHHHHHhhhhHHHHcCCCCCccceeecccccccccccccceeec
Q psy9003 893 PDNLKIYESHVGICTQE--------------QKCASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTL 958 (1276)
Q Consensus 893 ~~d~vIYElHVr~ft~~--------------~~~Gtf~gl~ek~LdyLK~LGVna~d~wV~LmP~f~~eew~~~~pi~~l 958 (1276)
|++.+|||++|+.|... ...|||+|++++ |||||+||||+ |||||+|+.
T Consensus 6 W~~~~iY~i~~~~F~~~~~~~~~~~~~~~~~~~gG~~~g~~~k-LdyL~~LGv~~----I~L~Pi~~~------------ 68 (381)
T d2aaaa2 6 WRTQSIYFLLTDRFGRTDNSTTATCNTGNEIYCGGSWQGIIDH-LDYIEGMGFTA----IWISPITEQ------------ 68 (381)
T ss_dssp HTTCCEEECCHHHHCCTTCCSCCCCCGGGCSCCCCCHHHHHHT-HHHHHTTTCCE----EEECCCEEE------------
T ss_pred hCCCcEEEEEeCcccCCCCCCCCCCCCCcCCcCCcCHHHHHHH-HHHHHHcCCCE----EEeCCCccC------------
Confidence 45678999999998531 112999999996 99999999999 999976641
Q ss_pred cCccccccccccccCCCcccCCCccccccccccccccccCCCCCCcccccccccccCCCCCccccccccccCCCCCCHHH
Q psy9003 959 TNRRYMEKTVAYAESHDQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQ 1038 (1276)
Q Consensus 959 ~~~Pi~E~~i~~~~S~~~~~WGYdp~nyf~~d~~~y~~~S~~~Dp~~~~dap~~~yas~s~hkYt~D~~~ID~~~Gt~eE 1038 (1276)
. +........+|||++.+|| +++ |++|+.++
T Consensus 69 ----~-----~~~~~~~~~~~gY~~~d~~---------------------~id-------------------~~~Gt~~~ 99 (381)
T d2aaaa2 69 ----L-----PQDTADGEAYHGYWQQKIY---------------------DVN-------------------SNFGTADN 99 (381)
T ss_dssp ----C-----CCCBTTBCSTTSCSEEEEE---------------------EEC-------------------TTTCCHHH
T ss_pred ----C-----ccCCCCCCCCccccccccc---------------------ccc-------------------cccCCHHH
Confidence 0 0011112356899888888 444 89999999
Q ss_pred HHHHHHHHHHcCCEEEEEEeccccCCcccCCCc---CCCCCC-CcccccCCCCCCCCCC----------------CcCCC
Q psy9003 1039 LKYLVDECHKAGLYVLLDVVHSHASKNVLDGLN---EFDGTQ-ACFFHDGPRGTHPLWD----------------SRLFN 1098 (1276)
Q Consensus 1039 fK~LV~alHk~GI~VILDvV~NHt~~~~~~~~~---~f~g~~-~~Yy~~~~~g~~~~W~----------------g~~LN 1098 (1276)
||+||++||++||+||||+|+||++.++.+... .+...+ ..|+.. .....+|. .++||
T Consensus 100 ~k~lv~~aH~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~pdln 177 (381)
T d2aaaa2 100 LKSLSDALHARGMYLMVDVVPDHMGYAGNGNDVDYSVFDPFDSSSYFHP--YCLITDWDNLTMVEDCWEGDTIVSLPDLD 177 (381)
T ss_dssp HHHHHHHHHTTTCEEEEEECCSBCCBSSCGGGCCGGGSBSCCSGGGBCC--CCBCCCTTCHHHHHHSBEECSSSEECBBC
T ss_pred HHHHHHHHhhhhhcccccccccccccccCCccccccccCCcccccccCC--CccccccccccccCCCccCCccccCcccc
Confidence 999999999999999999999999987654221 111111 122221 11111221 36899
Q ss_pred CCcHHHHHHHHHHHHHHHHhCCCcEEccCCccccccccCCCCCCCCCCCccccCCCCCchHHHHHHHHHHHHHhhCCCeE
Q psy9003 1099 YSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEII 1178 (1276)
Q Consensus 1099 ~~np~Vr~~Iidsl~~Wv~eygVDGFRfD~a~~L~~~d~g~g~~~~~~~~~~~~~~~d~~a~~Fl~el~~~Vr~~~Pdvi 1178 (1276)
+.+|+||++|++++++|+++|||||||||++.++. .+||+.+++ .|+++
T Consensus 178 ~~np~v~~~~~~~~~~~~~~~giDGfR~D~~~~~~--------------------------~~f~~~~~~-----~~~~~ 226 (381)
T d2aaaa2 178 TTETAVRTIWYDWVADLVSNYSVDGLRIDSVLEVQ--------------------------PDFFPGYNK-----ASGVY 226 (381)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHTCCEEEESCSTTSC--------------------------GGGHHHHHH-----HHTSE
T ss_pred ccchhhhhHHhhhhhhcccceeeeeeeeccccccc--------------------------HHHHHHHHh-----ccccc
Confidence 99999999999999999999999999999998872 136766653 37899
Q ss_pred EEEEccCCCCCCccccccCCcccCcccC-CCccc---hh------hHHHHHHHHHHHHHhcccCCCCCeeEeecCCCeEE
Q psy9003 1179 TIAEDVSGMPASCRPVTEGGTGFDYRLV-SLEGS---AL------SALFDAAMNTTEERFKWLSADPGYVSTKHEGDKVI 1248 (1276)
Q Consensus 1179 lIAE~~s~~p~~~~p~~~gglGFD~~~n-~lEes---aL------S~~F~~~Ln~l~~~~p~L~~~~~~~l~nHD~~RVl 1248 (1276)
++||.+...|....+.. .+|+..++ .+... ++ ...+...+..+...++. ......++.|||++|+.
T Consensus 227 ~igE~~~~~~~~~~~~~---~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~fl~nHD~~R~~ 302 (381)
T d2aaaa2 227 CVGEIDNGNPASDCPYQ---KVLDGVLNYPIYWQLLYAFESSSGSISNLYNMIKSVASDCSD-PTLLGNFIENHDNPRFA 302 (381)
T ss_dssp EEECCCCSCHHHHGGGG---GTSSEEBCHHHHHHHHHHHSSTTSCHHHHHHHHHHHHHHCSC-GGGSEECSCCTTSCCGG
T ss_pred ccccccCCCchhhhccc---cccccccchhHHHHHHHHHhcCCccHHHHHHHHHhhhhccCC-chhhccccccCCchhhh
Confidence 99998887765544433 33454444 11100 11 13445555555554442 11222457899999987
Q ss_pred EEEc
Q psy9003 1249 IFER 1252 (1276)
Q Consensus 1249 sf~R 1252 (1276)
+...
T Consensus 303 ~~~~ 306 (381)
T d2aaaa2 303 KYTS 306 (381)
T ss_dssp GTCC
T ss_pred cccC
Confidence 6543
|
| >d1ea9c3 c.1.8.1 (C:122-503) Maltogenic amylase, central domain {Bacillus sp., cyclomaltodextrinase [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Maltogenic amylase, central domain species: Bacillus sp., cyclomaltodextrinase [TaxId: 1409]
Probab=100.00 E-value=3.1e-33 Score=312.48 Aligned_cols=200 Identities=18% Similarity=0.249 Sum_probs=156.4
Q ss_pred CCCCceEEEEecCCccccC---------------------ccCcHHHHHHhhhhHHHHcCCCCCccceeecccccccccc
Q psy9003 892 KPDNLKIYESHVGICTQEQ---------------------KCASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWN 950 (1276)
Q Consensus 892 ~~~d~vIYElHVr~ft~~~---------------------~~Gtf~gl~ek~LdyLK~LGVna~d~wV~LmP~f~~eew~ 950 (1276)
+++++||||++|+.|.... ..|||+|++++ |||||+||||+ |||||++
T Consensus 6 W~~~~v~Y~i~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~Gd~~gi~~k-Ldylk~LGv~~----i~l~Pi~------ 74 (382)
T d1ea9c3 6 WVKDAIFYQIFPERFANGDTRNDPEGTLPWGSADPTPSCFFGGDLQGVIDH-LDHLSKLGVNA----VYFTPLF------ 74 (382)
T ss_dssp HHHHCCCCEECSTTSCCCCSCSCSSCCSCCCSSSCCCSSCCCCCHHHHHHT-HHHHHHHTCSE----EEECCCS------
T ss_pred cccCCeEEEEEcchhcCCCCCCCccCcccccccCCCcCccCCcCHHHHHHh-hHHHHhCCCCE----EEeCCCc------
Confidence 3478999999999996421 14999999997 99999999999 9999544
Q ss_pred cccceeeccCccccccccccccCCCcccCCCccccccccccccccccCCCCCCcccccccccccCCCCCccccccccccC
Q psy9003 951 MGNIVHTLTNRRYMEKTVAYAESHDQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKA 1030 (1276)
Q Consensus 951 ~~~pi~~l~~~Pi~E~~i~~~~S~~~~~WGYdp~nyf~~d~~~y~~~S~~~Dp~~~~dap~~~yas~s~hkYt~D~~~ID 1030 (1276)
+. ..+|||++.+|+ +++
T Consensus 75 --------------~~---------~~~~gY~~~~~~---------------------~id------------------- 91 (382)
T d1ea9c3 75 --------------KA---------TTNHKYDTEDYF---------------------QID------------------- 91 (382)
T ss_dssp --------------SC---------SSSSTTSCSCTT---------------------CCC-------------------
T ss_pred --------------cC---------CCCCCCCccccc---------------------ccc-------------------
Confidence 21 135899999988 444
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEEEeccccCCcccCCCcCC-C---CCCCcccccCCC--------CCCCCC----CC
Q psy9003 1031 GLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEF-D---GTQACFFHDGPR--------GTHPLW----DS 1094 (1276)
Q Consensus 1031 ~~~Gt~eEfK~LV~alHk~GI~VILDvV~NHt~~~~~~~~~~f-~---g~~~~Yy~~~~~--------g~~~~W----~g 1094 (1276)
|++|+.+|||+||++||++||+||+|+|+||++.++++..... . ...+.||..... .....+ ..
T Consensus 92 ~~~Gt~~df~~lv~~~h~~gi~VilD~V~NH~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (382)
T d1ea9c3 92 PQFGDKDTLKKLVDLCHERGIRVLLDAVFNHSGRTFPPFVDVLKNGEKSKYKDWFHIRSLPLEVVDGIPTYDTFAFEPLM 171 (382)
T ss_dssp TTTCCHHHHHHHHHHHTTTTCEEEEECCCSBCCTTTHHHHHHHTTTTTCTTTTSSCBCSSSCCCTTSCCSBCBSSSCTTS
T ss_pred cccCCHHHHHHHHHHHHhhcceEEEeeecccccccCcchhhhhhcCCcccccccccccccccccccCccccccccccccc
Confidence 8999999999999999999999999999999999876532111 1 111233432110 001111 14
Q ss_pred cCCCCCcHHHHHHHHHHHHHHHHhCCCcEEccCCccccccccCCCCCCCCCCCccccCCCCCchHHHHHHHHHHHHHhhC
Q psy9003 1095 RLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKY 1174 (1276)
Q Consensus 1095 ~~LN~~np~Vr~~Iidsl~~Wv~eygVDGFRfD~a~~L~~~d~g~g~~~~~~~~~~~~~~~d~~a~~Fl~el~~~Vr~~~ 1174 (1276)
+++|+++|+|+++|++++++|+++|||||||+|++.++. ..+|+.+...++..+
T Consensus 172 ~d~n~~~~~v~~~l~~~~~~w~~~~gvDGfR~Da~~~~~--------------------------~~~~~~~~~~~~~~~ 225 (382)
T d1ea9c3 172 PKLNTEHPDVKEYLLKAAEYWIRETGIDGWRLDVANEVS--------------------------HQFWREFRRVVKQAN 225 (382)
T ss_dssp BBCCTTSHHHHHHHHHHHHHHHHHHCCSEEEETTCTTSC--------------------------HHHHHHHHHHHHHHC
T ss_pred CccccccHHHHHHHHHHHhhcccceeeeEEEecchhhCc--------------------------hhhhhhhhhhhhhcC
Confidence 789999999999999999999999999999999998872 348889999999999
Q ss_pred CCeEEEEEccCCCCCCc
Q psy9003 1175 PEIITIAEDVSGMPASC 1191 (1276)
Q Consensus 1175 PdvilIAE~~s~~p~~~ 1191 (1276)
|+++++||.|...+...
T Consensus 226 p~~~~~~e~~~~~~~~~ 242 (382)
T d1ea9c3 226 PDAYILGEVWHESSIWL 242 (382)
T ss_dssp TTCEEEECCCSCCTTTT
T ss_pred CCeeEEeeecccccccc
Confidence 99999999887665433
|
| >d1lwha2 c.1.8.1 (A:1-391) 4-alpha-glucanotransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: 4-alpha-glucanotransferase species: Thermotoga maritima [TaxId: 2336]
Probab=99.98 E-value=1.1e-33 Score=317.57 Aligned_cols=191 Identities=18% Similarity=0.210 Sum_probs=141.2
Q ss_pred ceEEEEecCCccc--cCccCcHHHHHHhhhhHHHHcCCCCCccceeecccccccccccccceeeccCccccccccccccC
Q psy9003 896 LKIYESHVGICTQ--EQKCASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAES 973 (1276)
Q Consensus 896 ~vIYElHVr~ft~--~~~~Gtf~gl~ek~LdyLK~LGVna~d~wV~LmP~f~~eew~~~~pi~~l~~~Pi~E~~i~~~~S 973 (1276)
+||||+|||+|++ ..+.|+|+|++++ |||||+||||+ |||||+| +.
T Consensus 1 ~v~Yei~~~~F~d~~~dg~Gd~~gi~~k-Ldyl~~LGv~~----I~l~Pi~--------------------~~------- 48 (391)
T d1lwha2 1 MIGYQIYVRSFRDGNLDGVGDFRGLKNA-VSYLKELGIDF----VWLMPVF--------------------SS------- 48 (391)
T ss_dssp CCEEEECGGGTCCSSSSSSCCHHHHHHT-HHHHHHTTCSE----EEECCCE--------------------EC-------
T ss_pred CEEEEEccccccCCCCCCccCHHHHHHh-hHHHHHcCCCE----EEECCCC--------------------CC-------
Confidence 6899999999975 4567999999997 99999999999 9999443 21
Q ss_pred CCcccCCCccccccccccccccccCCCCCCcccccccccccCCCCCccccccccccCCCCCCHHHHHHHHHHHHHcCCEE
Q psy9003 974 HDQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLYV 1053 (1276)
Q Consensus 974 ~~~~~WGYdp~nyf~~d~~~y~~~S~~~Dp~~~~dap~~~yas~s~hkYt~D~~~ID~~~Gt~eEfK~LV~alHk~GI~V 1053 (1276)
..+|||++.||+ +++ |+||+.+|||+||++||++||+|
T Consensus 49 --~~~~GY~~~d~~---------------------~vd-------------------~~~Gt~~d~~~lv~~~h~~gi~V 86 (391)
T d1lwha2 49 --ISFHGYDVVDFY---------------------SFK-------------------AEYGSEREFKEMIEAFHDSGIKV 86 (391)
T ss_dssp --SSSSCCSCSEEE---------------------EEC-------------------GGGCCHHHHHHHHHHHHHTTCEE
T ss_pred --CCCCCCCccCCC---------------------CcC-------------------cccCCHHHHHHHHHHHHhcCCEE
Confidence 246999999999 555 88999999999999999999999
Q ss_pred EEEEeccccCCcccCCCcCCCCCC-----------------------CcccccCCCCC-CCCC---CCcCCCCCcHHHHH
Q psy9003 1054 LLDVVHSHASKNVLDGLNEFDGTQ-----------------------ACFFHDGPRGT-HPLW---DSRLFNYSEIEVLR 1106 (1276)
Q Consensus 1054 ILDvV~NHt~~~~~~~~~~f~g~~-----------------------~~Yy~~~~~g~-~~~W---~g~~LN~~np~Vr~ 1106 (1276)
|||+|+||++..+.++.....+.. ..++....++. +..| ..++||+++|+||+
T Consensus 87 ilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdln~~n~~v~~ 166 (391)
T d1lwha2 87 VLDLPIHHTGFLHTWFQKALKGDPHYRDYYVWANKETDLDERREWDGEKIWHPLEDGRFYRGLFGPFSPDLNYDNPQVFD 166 (391)
T ss_dssp EEEECTTBCCTTSHHHHHHHTTCHHHHTTBCBCCTTCCTTCBCSSSCCBCEEECTTSCEEECTTCTTSCBBCTTSHHHHH
T ss_pred eecccccccccccccccccccCCccccccceecCCccccCccccCCCCccccccCCCcccccccCCcCCccccccchhhH
Confidence 999999999988754311110000 00111111111 1111 24789999999999
Q ss_pred HHHHHHHHHHHhCCCcEEccCCccccccccCCCCCCCCCCCccccCCCCCchHHHHHHHHHHHHHhhCCCeEEEEEccCC
Q psy9003 1107 FLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSG 1186 (1276)
Q Consensus 1107 ~Iidsl~~Wv~eygVDGFRfD~a~~L~~~d~g~g~~~~~~~~~~~~~~~d~~a~~Fl~el~~~Vr~~~PdvilIAE~~s~ 1186 (1276)
+|+++++||++ +||||||||++.+|... ......+|+.+.+. ...+.++|.|..
T Consensus 167 ~i~~~~~~w~e-~gvDGfR~Daa~~~~~~--------------------~~~~~~~~~~~~~~-----~~~~~~~e~~~~ 220 (391)
T d1lwha2 167 EMKRLVLHLLD-MGVDGFRFDAAKHMRDT--------------------IEQNVRFWKYFLSD-----LKGIFLAEIWAE 220 (391)
T ss_dssp HHHHHHHHHHH-HTCCEEEETTGGGSSSS--------------------HHHHHHHHHHHHTT-----CCSEEEECCCSC
T ss_pred HHHHHHHHHhh-cCCCcceechHHHHHHh--------------------hhhhhHHHHHHHHH-----hhhhhhhhhhcc
Confidence 99999999985 89999999999988310 12234566655432 245789998754
|
| >d3bmva4 c.1.8.1 (A:1-406) Cyclodextrin glycosyltransferase {Thermoanaerobacterium [TaxId: 28895]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Cyclodextrin glycosyltransferase species: Thermoanaerobacterium [TaxId: 28895]
Probab=99.98 E-value=1.4e-32 Score=311.47 Aligned_cols=269 Identities=15% Similarity=0.168 Sum_probs=173.4
Q ss_pred CCCCceEEEEecCCcccc--------------------CccCcHHHHHHhhhh--HHHHcCCCCCccceeeccccccccc
Q psy9003 892 KPDNLKIYESHVGICTQE--------------------QKCASYEDFVRVVIP--RIVKQGMAIPDKWIELLKKFKDEDW 949 (1276)
Q Consensus 892 ~~~d~vIYElHVr~ft~~--------------------~~~Gtf~gl~ek~Ld--yLK~LGVna~d~wV~LmP~f~~eew 949 (1276)
.+++.||||++|+.|... -..|||+|++++ || |||+||||+ |||||+++....
T Consensus 11 ~~~~~viY~i~~drF~~g~~~~d~~~~~~~~~~~~~~~~~gGdl~Gi~~k-Ld~~YLk~LGv~~----I~L~Pi~~~~~~ 85 (406)
T d3bmva4 11 NYSTDVIYQIVTDRFVDGNTSNNPTGDLYDPTHTSLKKYFGGDWQGIINK-INDGYLTGMGVTA----IWIPQPVENIYA 85 (406)
T ss_dssp CCTTCCEEECCGGGTCCCCGGGSCCGGGBCTTSCSTTSBCCCCHHHHHHH-HHTSTTGGGTCCE----EEECCCEEECCC
T ss_pred CCccCeEEEechhhccCCCCCCCCCCCccCCCCCccCccCCcCHHHHHHh-cCHHHHHHcCCCE----EEECCccccccc
Confidence 456889999999999521 024999999997 98 999999999 999976642100
Q ss_pred ccccceeeccCccccccccccccCCCcccCCCccccccccccccccccCCCCCCcccccccccccCCCCCcccccccccc
Q psy9003 950 NMGNIVHTLTNRRYMEKTVAYAESHDQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHK 1029 (1276)
Q Consensus 950 ~~~~pi~~l~~~Pi~E~~i~~~~S~~~~~WGYdp~nyf~~d~~~y~~~S~~~Dp~~~~dap~~~yas~s~hkYt~D~~~I 1029 (1276)
. .|.. + .++ ...+|||++.||+ + |
T Consensus 86 ~----------~~~~----~-~~~-~~~~~gY~~~d~~---------------------~-------------------v 109 (406)
T d3bmva4 86 V----------LPDS----T-FGG-STSYHGYWARDFK---------------------R-------------------T 109 (406)
T ss_dssp C----------EEET----T-TEE-ECSTTSCSEEEEE---------------------E-------------------E
T ss_pred c----------cCCC----C-CCC-ChhhcCccccccc---------------------c-------------------c
Confidence 0 0000 0 011 2346777777777 3 4
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCEEEEEEeccccCCcccCCCcCCCCCC---Cccc----ccCCCCC-----CCCC-----
Q psy9003 1030 AGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQ---ACFF----HDGPRGT-----HPLW----- 1092 (1276)
Q Consensus 1030 D~~~Gt~eEfK~LV~alHk~GI~VILDvV~NHt~~~~~~~~~~f~g~~---~~Yy----~~~~~g~-----~~~W----- 1092 (1276)
||+||+++|||+||++||++||+||||+|+|||+..+.+......... ..++ ...+.+. ...|
T Consensus 110 dp~~Gt~~dfk~LV~~aH~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (406)
T d3bmva4 110 NPYFGSFTDFQNLINTAHAHNIKVIIDFAPNHTSPASETDPTYAENGRLYDNGTLLGGYTNDTNGYFHHYGGTDFSSYED 189 (406)
T ss_dssp CTTTCCHHHHHHHHHHHHHTTCEEEEEECTTEEEECCSSCTTSTTTTCEEETTEEEECSTTCTTCCBCCSCBCCCSSHHH
T ss_pred CcccccHHHHHHHHHHHHhccccceeeeecccccccccchhhhcccCccccCCccccccccccccccccccCcccccccc
Confidence 599999999999999999999999999999999988766543222110 0000 0011100 0111
Q ss_pred -------CCcCCCCCcHHHHHHHHHHHHHHHHhCCCcEEccCCccccccccCCCCCCCCCCCccccCCCCCchHHHHHHH
Q psy9003 1093 -------DSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMV 1165 (1276)
Q Consensus 1093 -------~g~~LN~~np~Vr~~Iidsl~~Wv~eygVDGFRfD~a~~L~~~d~g~g~~~~~~~~~~~~~~~d~~a~~Fl~e 1165 (1276)
+-++||+++|+||++|++++++|++ +||||||+|++.++. ..||++
T Consensus 190 ~~~~~~~~~~dln~~~~~v~~~l~~~~~~~~~-~giDGfR~D~~~~~~--------------------------~~~~~~ 242 (406)
T d3bmva4 190 GIYRNLFDLADLNQQNSTIDSYLKSAIKVWLD-MGIDGIRLDAVKHMP--------------------------FGWQKN 242 (406)
T ss_dssp HHHSBSTTEEEBCTTSHHHHHHHHHHHHHHHH-TTCCEEEESCGGGSC--------------------------HHHHHH
T ss_pred ccccccccccccccccHHHHHHHHHHHHHHhh-cCCCccccccccccc--------------------------hhhHHH
Confidence 2367999999999999999999996 899999999998772 358999
Q ss_pred HHHHHHhhCCCeEEEEEccCCCCCCccc--cc---cCCcccCcccC-CCc----cch-hhHHHHHHHHHHHHHhcccCCC
Q psy9003 1166 ANKFLHDKYPEIITIAEDVSGMPASCRP--VT---EGGTGFDYRLV-SLE----GSA-LSALFDAAMNTTEERFKWLSAD 1234 (1276)
Q Consensus 1166 l~~~Vr~~~PdvilIAE~~s~~p~~~~p--~~---~gglGFD~~~n-~lE----esa-LS~~F~~~Ln~l~~~~p~L~~~ 1234 (1276)
+++.+++..| ..+++|.|......... .. .+...|||.+. .+. ... ....+...+......++.. ..
T Consensus 243 ~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 320 (406)
T d3bmva4 243 FMDSILSYRP-VFTFGEWFLGTNEIDVNNTYFANESGMSLLDFRFSQKVRQVFRDNTDTMYGLDSMIQSTASDYNFI-ND 320 (406)
T ss_dssp HHHHHHHHSC-CEEEECCCCCTTCCCHHHHHHHHHSSSEEBCHHHHHHHHHHHTSCSSCHHHHHHHHHHHHHHCTTG-GG
T ss_pred HHHHHHHhhh-ccccccccccccccccccccccCCCccceecchhhHHHHHhhccCcchhHHHHHHHhhhcccccch-hh
Confidence 9999999987 66788977654332111 11 11112333322 110 000 0133444444444444431 12
Q ss_pred CCeeEeecCCCeEEEE
Q psy9003 1235 PGYVSTKHEGDKVIIF 1250 (1276)
Q Consensus 1235 ~~~~l~nHD~~RVlsf 1250 (1276)
...++.|||++|+++.
T Consensus 321 ~~~fl~nHD~~R~~~~ 336 (406)
T d3bmva4 321 MVTFIDNHDMDRFYNG 336 (406)
T ss_dssp CEECSCCSSSCCSCCS
T ss_pred hcccccCCchhhhccC
Confidence 3356789999998763
|
| >d1gjwa2 c.1.8.1 (A:1-572) Maltosyltransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Maltosyltransferase species: Thermotoga maritima [TaxId: 2336]
Probab=99.97 E-value=8.1e-33 Score=325.01 Aligned_cols=240 Identities=16% Similarity=0.126 Sum_probs=163.2
Q ss_pred cCCCeEEEEcCCCCCCCcccCcccEEEEEEEEeCCeeeeecCCcceEeecCCC-CCccccceeeCCCCCCCCCcCC-CC-
Q psy9003 813 LDFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHGHLLDRLSPWATYVTEPPV-VGHAYEQRIWNPKPQDKHKWTS-SK- 889 (1276)
Q Consensus 813 ~~~GVWsl~Ip~~~~G~~~i~hGs~YkYrV~~~dG~~~~~~DPYAkav~~~~~-~s~v~~~~~~~p~~~~~y~W~~-~r- 889 (1276)
+..|.|...+|+..... ++. +.....|.. .+||||+++..... .+...+ .+.. .+..|.. .+
T Consensus 13 ~~~g~~~y~~~~~~~~~-------~~~-~~~~~~~~~--~~DPya~~~~~~~~~~~~~~~---~~~~--~~~~~~~~~~~ 77 (572)
T d1gjwa2 13 KATGKRIYAVPKLWIPG-------FFK-KFDEKSGRC--FVDPYELGAEITDWILNQSRE---WDYS--QPLSFLKGEKT 77 (572)
T ss_dssp HCCCCCCEEECGGGSCT-------TCC-CCEEETTEE--EECHHHHHHHHHHHHHTTCCS---SCTT--SCHHHHHTCCS
T ss_pred hccCceEEEeCCCcCCc-------ccc-eeccCCCeE--EecCccccccccccccccccc---cccc--cccchhcCCCC
Confidence 45689999999876542 222 222235664 67999987643211 111111 1111 1123332 22
Q ss_pred CCCCCCceEEEEecCCcccc----------------CccCcHHHHHHhhhhHHHHcCCCCCccceeeccccccccccccc
Q psy9003 890 PKKPDNLKIYESHVGICTQE----------------QKCASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGN 953 (1276)
Q Consensus 890 p~~~~d~vIYElHVr~ft~~----------------~~~Gtf~gl~ek~LdyLK~LGVna~d~wV~LmP~f~~eew~~~~ 953 (1276)
|.+++++||||+|||+|+.. ...|||+|++++ |||||+||||+ |||||+|++.+
T Consensus 78 p~w~~~~viYei~v~~F~~~~~~g~~~~~~~~~~g~~~~Gd~~Gi~~k-LdYLk~LGvta----I~L~Pi~~~~~----- 147 (572)
T d1gjwa2 78 PDWIKRSVVYGSLPRTTAAYNHKGSGYYEENDVLGFREAGTFFKMMLL-LPFVKSLGADA----IYLLPVSRMSD----- 147 (572)
T ss_dssp GGGGGGCCEEEECHHHHTCCCTTSSSCCCSBCTTSCBCSCCHHHHHHT-HHHHHHHTCCE----EEECCCEEECC-----
T ss_pred CccccCcEEEEEechhhcCCCCCCCcccccCcccCccCCCCHHHHHHh-hHHHHHcCCCE----EEeCCcccCcc-----
Confidence 23568999999999999741 124999999986 99999999999 99997765311
Q ss_pred ceeeccCccccccccccccCCCcccCCCccccccccccccccccCCCCCCcccccccccccCCCCCccccccccccCCCC
Q psy9003 954 IVHTLTNRRYMEKTVAYAESHDQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLF 1033 (1276)
Q Consensus 954 pi~~l~~~Pi~E~~i~~~~S~~~~~WGYdp~nyf~~d~~~y~~~S~~~Dp~~~~dap~~~yas~s~hkYt~D~~~ID~~~ 1033 (1276)
......++|||++.||| +++++|++. .++.+
T Consensus 148 -----------------~~~~~~~~~GY~~~dy~---------------------~~dp~~~~~-----------~~~~~ 178 (572)
T d1gjwa2 148 -----------------LFKKGDAPSPYSVKNPM---------------------ELDERYHDP-----------LLEPF 178 (572)
T ss_dssp -----------------SSCSSSSCCTTSEEEEE---------------------EECGGGSCG-----------GGTTS
T ss_pred -----------------ccCCCCCCCCCCccCCC---------------------CCCcccccc-----------cccCC
Confidence 11124578999999999 555555542 23889
Q ss_pred CCHHHHHHHHHHHHHcCCEEEEEEeccccCCcccCCCcCCCCCCCccccc-----CCCCCCCC-----------------
Q psy9003 1034 GTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHD-----GPRGTHPL----------------- 1091 (1276)
Q Consensus 1034 Gt~eEfK~LV~alHk~GI~VILDvV~NHt~~~~~~~~~~f~g~~~~Yy~~-----~~~g~~~~----------------- 1091 (1276)
|+++|||+||++||++||+||||||+|||+.+++|... .+.||.. .+++..+.
T Consensus 179 Gt~~dfk~lV~~~H~~GI~VIlDvV~NHts~~~~~~~~-----~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 253 (572)
T d1gjwa2 179 KVDEEFKAFVEACHILGIRVILDFIPRTAARDSDLIRE-----HPDWFYWIKVEELADYTPPRAEELPFKVPDEDELEII 253 (572)
T ss_dssp CHHHHHHHHHHHHHHTTCEEEEEECTTEEETTCGGGTT-----CGGGSCCEEGGGSTTCCCCCCTTSCSBCCCHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCcEEEEEeeecccccCCHHHHh-----CccccccccccccccCCCCCCCCCcccCCCCcccccc
Confidence 99999999999999999999999999999998866421 2233221 11111100
Q ss_pred -----------CCCcCCCCCcHHHHHHHHHHHHHHHHhCCCcEEccCCcccc
Q psy9003 1092 -----------WDSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSM 1132 (1276)
Q Consensus 1092 -----------W~g~~LN~~np~Vr~~Iidsl~~Wv~eygVDGFRfD~a~~L 1132 (1276)
...+++|+.+|++++.+.+++.+|++ ++|||||+|++..+
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~vdgfr~d~~~~~ 304 (572)
T d1gjwa2 254 YNKENVKRHLKKFTLPPNLIDPQKWEKIKREEGNILE-LIVKEFGIITPPGF 304 (572)
T ss_dssp HTSHHHHHHHTTBCCCHHHHCHHHHHHHHTCSSCHHH-HHHHHHSEECCCBC
T ss_pred cCCceeeeeccccCCCccccCHHHHHHHHHHhhhHHh-cccceeeccccccc
Confidence 01256677899999999999999986 69999999988654
|
| >d2fhfa5 c.1.8.1 (A:403-965) Pullulanase PulA {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Pullulanase PulA species: Klebsiella pneumoniae [TaxId: 573]
Probab=99.97 E-value=3.4e-31 Score=307.98 Aligned_cols=226 Identities=16% Similarity=0.180 Sum_probs=158.7
Q ss_pred CCCCceEEEEecCCccc------cCccCcHHHH-------HHhhhhHHHHcCCCCCccceeeccccccccccc-------
Q psy9003 892 KPDNLKIYESHVGICTQ------EQKCASYEDF-------VRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNM------- 951 (1276)
Q Consensus 892 ~~~d~vIYElHVr~ft~------~~~~Gtf~gl-------~ek~LdyLK~LGVna~d~wV~LmP~f~~eew~~------- 951 (1276)
+++++||||+|||+|+. +..+|||+|+ +++ ||||++||||+ |||||+|++..-..
T Consensus 18 ~~~~~viYei~vr~F~d~~~d~~~~~~G~f~~~~~~~~~~i~~-LdyL~~LGVta----iwL~Pi~~~~~~d~~~~~~~~ 92 (563)
T d2fhfa5 18 DLAKMTIHESHIRDLSAWDQTVPAELRGKYLALTAQESNMVQH-LKQLSASGVTH----IELLPVFDLATVNEFSDKVAD 92 (563)
T ss_dssp HHHTCEEEEECHHHHHTTCTTSCGGGTTSGGGGGCTTSHHHHH-HHHHHHHTCCE----EEESCCEEESSSCCCGGGCCC
T ss_pred CHHHcEEEEecchhhhccCCCCccccCcChhhccccCcchhhh-HHHHHHcCCCE----EEeCCcccCCccccccccccc
Confidence 34789999999999974 3456888885 443 99999999999 99999987421110
Q ss_pred -ccce-------------------------------eeccCcccccc---ccccccCCCcccCCCccccccccccccccc
Q psy9003 952 -GNIV-------------------------------HTLTNRRYMEK---TVAYAESHDQALVGDKTIAFWLMDKEMYTH 996 (1276)
Q Consensus 952 -~~pi-------------------------------~~l~~~Pi~E~---~i~~~~S~~~~~WGYdp~nyf~~d~~~y~~ 996 (1276)
..++ |+-.+.+.... ..+.......++|||++.|||
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~wGYdv~dy~--------- 163 (563)
T d2fhfa5 93 IQQPFSRLCEVNSAVKSSEFAGYCDSGSTVEEVLTQLKQNDSKDNPQVQALNTLVAQTDSYNWGYDPFHYT--------- 163 (563)
T ss_dssp TTSBHHHHHHHCHHHHTSTTGGGTTSSCBHHHHHHHHSTTCBTTBCHHHHHHHHHTTSSSCCCCCCEEEEE---------
T ss_pred cccccccccccccccchhhhhhhccccchhhhhhhcccccccchhhhhhcccccccccCcCCCCCChhhcc---------
Confidence 0000 00000000000 001111234578999999999
Q ss_pred cCCCCCCcccccccccccCCCCCccccccccccCCCCCC-------HHHHHHHHHHH-HHcCCEEEEEEeccccCCcccC
Q psy9003 997 MSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGT-------PEQLKYLVDEC-HKAGLYVLLDVVHSHASKNVLD 1068 (1276)
Q Consensus 997 ~S~~~Dp~~~~dap~~~yas~s~hkYt~D~~~ID~~~Gt-------~eEfK~LV~al-Hk~GI~VILDvV~NHt~~~~~~ 1068 (1276)
+++ |+||| ++|||+||++| |++||+||||+|+|||+..++|
T Consensus 164 ------------~i~-------------------p~~Gt~~d~~~~l~Efk~lV~a~~H~rGIkVIlD~V~NHts~~h~w 212 (563)
T d2fhfa5 164 ------------VPE-------------------GSYATDPEGTARIKEFRTMIQAIKQDLGMNVIMDVVYNHTNAAGPT 212 (563)
T ss_dssp ------------EEC-------------------STTSSCCSTTHHHHHHHHHHHHHHHTSCCEEEEEECTTEESCCSSS
T ss_pred ------------ccc-------------------CccCcCcchhhHHHHHHHHHHHHhhccCceeeecCcccccCCCCCc
Confidence 566 55555 89999999987 8999999999999999999988
Q ss_pred CCcCCCC-CCC-cccccCCC-CCCCCC-CCcCCCCCcHHHHHHHHHHHHHHHHhCCCcEEccCCccccccccCCCCCCCC
Q psy9003 1069 GLNEFDG-TQA-CFFHDGPR-GTHPLW-DSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFS 1144 (1276)
Q Consensus 1069 ~~~~f~g-~~~-~Yy~~~~~-g~~~~W-~g~~LN~~np~Vr~~Iidsl~~Wv~eygVDGFRfD~a~~L~~~d~g~g~~~~ 1144 (1276)
+...... ..+ .||+.... +...+| .++.+++.+|.++.++.++.++|+.++++||||+|++..+.
T Consensus 213 f~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~dg~r~D~~~~~~----------- 281 (563)
T d2fhfa5 213 DRTSVLDKIVPWYYQRLNETTGSVESATCCSDSAPEHRMFAKLIADSLAVWTTDYKIDGFRFDLMLYHP----------- 281 (563)
T ss_dssp CTTCCHHHHSTTTSBCBCTTTCCBCCTTSSEEBCTTSHHHHHHHHHHHHHHHHHHCCCEEEETTGGGSB-----------
T ss_pred hhhcccCCCCCcceeccCCCCCcccCCCCCcccCccchhHHHHHHHhhHHHHhhhcccccchhhhhhcc-----------
Confidence 7533221 122 33333332 222333 36889999999999999999999999999999999988762
Q ss_pred CCCccccCCCCCchHHHHHHHHHHHHHhhCCCeEEEEEccCCCC
Q psy9003 1145 GHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMP 1188 (1276)
Q Consensus 1145 ~~~~~~~~~~~d~~a~~Fl~el~~~Vr~~~PdvilIAE~~s~~p 1188 (1276)
..++..+...+....|++.+++|.|...+
T Consensus 282 ---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (563)
T d2fhfa5 282 ---------------KAQILSAWERIKALNPDIYFFGEGWDSNQ 310 (563)
T ss_dssp ---------------HHHHHHHHHHHHTTCTTCEEEECCCCCSC
T ss_pred ---------------hhhhhhhhHHHhhhCcccccccccccccc
Confidence 13566667777889999999999876543
|
| >d1ji1a3 c.1.8.1 (A:123-554) Maltogenic amylase, central domain {Thermoactinomyces vulgaris, TVAI [TaxId: 2026]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Maltogenic amylase, central domain species: Thermoactinomyces vulgaris, TVAI [TaxId: 2026]
Probab=99.97 E-value=3.7e-31 Score=300.79 Aligned_cols=267 Identities=15% Similarity=0.115 Sum_probs=176.7
Q ss_pred CCCCceEEEEecCCccccC--------------------------------------ccCcHHHHHHhhhhHHHH-cCCC
Q psy9003 892 KPDNLKIYESHVGICTQEQ--------------------------------------KCASYEDFVRVVIPRIVK-QGMA 932 (1276)
Q Consensus 892 ~~~d~vIYElHVr~ft~~~--------------------------------------~~Gtf~gl~ek~LdyLK~-LGVn 932 (1276)
+++++|||+++|+.|...+ ..|+|+|++++ ||||++ ||||
T Consensus 7 W~~~~viY~i~~drF~dgd~~nd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gGdl~Gi~~k-LdYl~~~LGv~ 85 (432)
T d1ji1a3 7 WLKNGVMYQIFPDRFYNGDSSNDVQTGSYTYNGTPTEKKAWGSSVYADPGYDNSLVFFGGDLAGIDQK-LGYIKKTLGAN 85 (432)
T ss_dssp HHHHCCEEEECGGGTCCSCGGGCCCTTSCEETTEECEECCTTSCCSCCTTSCGGGEECCCCHHHHHHT-HHHHHTTTCCC
T ss_pred cccCCeEEEEeccccCCCCCccccccccccccCCccccccccccccccccccccccccCcCHHHHHHH-hhHHHhhcCCC
Confidence 4578999999999984210 13999999996 999986 9999
Q ss_pred CCccceeecccccccccccccceeeccCccccccccccccCCCcccCCCccccccccccccccccCCCCCCccccccccc
Q psy9003 933 IPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAESHDQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACE 1012 (1276)
Q Consensus 933 a~d~wV~LmP~f~~eew~~~~pi~~l~~~Pi~E~~i~~~~S~~~~~WGYdp~nyf~~d~~~y~~~S~~~Dp~~~~dap~~ 1012 (1276)
+ |||||+| +. ..+|||++.||+ +++
T Consensus 86 ~----I~L~Pi~--------------------~~---------~~~~GY~~~d~~---------------------~id- 110 (432)
T d1ji1a3 86 I----LYLNPIF--------------------KA---------PTNHKYDTQDYM---------------------AVD- 110 (432)
T ss_dssp E----EEESCCE--------------------EC---------SSSSCCSCSEEE---------------------EEC-
T ss_pred E----EEeCCCC--------------------cC---------CCCCCccccccc---------------------ccC-
Confidence 9 9999443 22 235999999999 554
Q ss_pred ccCCCCCccccccccccCCCCCCHHHHHHHHHHHHHcC----CEEEEEEeccccCCcccCCCcCC--------CCCCCcc
Q psy9003 1013 KFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAG----LYVLLDVVHSHASKNVLDGLNEF--------DGTQACF 1080 (1276)
Q Consensus 1013 ~yas~s~hkYt~D~~~ID~~~Gt~eEfK~LV~alHk~G----I~VILDvV~NHt~~~~~~~~~~f--------~g~~~~Y 1080 (1276)
|+||+++|||+||++||++| |+||||+|+||++.+++|....- ......|
T Consensus 111 ------------------~~~Gt~~d~~~lv~~~H~~g~~~~I~VilD~V~NH~s~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (432)
T d1ji1a3 111 ------------------PAFGDNSTLQTLINDIHSTANGPKGYLILDGVFNHTGDSHPWFDKYNNFSSQGAYESQSSPW 172 (432)
T ss_dssp ------------------TTTCCHHHHHHHHHHHHCSSSSSCCEEEEEECCSBCCTTSTTTCTTCCSSSCCTTTCTTCTT
T ss_pred ------------------cccCCHHHHHHHHHHHHHhhhhcceeEeccccccccCCCchhHhhccCcccccccccccccc
Confidence 99999999999999999987 88999999999999987643211 1111122
Q ss_pred cccC-----CCCCCCCCC---CcCCCCCc--HHHHHHHH----HHHHHHH-HhCCCcEEccCCccccccccCCCCCCCCC
Q psy9003 1081 FHDG-----PRGTHPLWD---SRLFNYSE--IEVLRFLL----SNLRWYL-DEYQFDGFRFDGVTSMLYHNHGCGEGFSG 1145 (1276)
Q Consensus 1081 y~~~-----~~g~~~~W~---g~~LN~~n--p~Vr~~Ii----dsl~~Wv-~eygVDGFRfD~a~~L~~~d~g~g~~~~~ 1145 (1276)
+... ++.....|. .+++|+.+ +.||.++. +++++|+ +++||||||+|++..+... +
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~ln~~n~~~~v~~~~~~~~~~~~~~wl~~~~gvDGfR~D~~~~i~~~-------~-- 243 (432)
T d1ji1a3 173 YNYYTFYTWPDSYASFLGFNSLPKLNYGNSGSAVRGVIYNNSNSVAKTYLNPPYSVDGWRLDAAQYVDAN-------G-- 243 (432)
T ss_dssp GGGBCEEETTTEECEETTEEEEEBBBCCSTTCHHHHHHTTSTTSHHHHHHSTTTCCCEEEETTGGGCBST-------T--
T ss_pred cccccccccccccccccccCccCccccCCCcHHHHHHHHHHHHHHHHHhhhhhcCccceeeeceeeeccC-------C--
Confidence 2110 000011111 26788877 45665554 5677776 5799999999999988421 0
Q ss_pred CCccccCCCCCchHHHHHHHHHHHHHhhCCCeEEEEEccCCCCCCccccccCCcccCcccC--CCc--------------
Q psy9003 1146 HYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDYRLV--SLE-------------- 1209 (1276)
Q Consensus 1146 ~~~~~~~~~~d~~a~~Fl~el~~~Vr~~~PdvilIAE~~s~~p~~~~p~~~gglGFD~~~n--~lE-------------- 1209 (1276)
....+.....||+++++.++..+|++++|||.|...+..+... ..++..++ .+.
T Consensus 244 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~igE~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (432)
T d1ji1a3 244 ------NNGSDVTNHQIWSEFRNAVKGVNSNAAIIGEYWGNANPWTAQG----NQWDAATNFDGFTQPVSEWITGKDYQN 313 (432)
T ss_dssp ------CCCSSHHHHHHHHHHHHHHHHHCTTCEEEECCSSCCGGGTTTS----SSCSEEBCTTTTHHHHHHHHTSBCTTS
T ss_pred ------CCcccccchhHHHHHHHHHHhhCCCeEEEeeeccCccceeccc----cccchhhhhhhhhHHHHHHhhcchhhc
Confidence 0122455778999999999999999999999887655433222 12222221 010
Q ss_pred -cchh-hHHHHHHHHHHHHHhcccC-CCCCeeEeecCCCeEEEEE
Q psy9003 1210 -GSAL-SALFDAAMNTTEERFKWLS-ADPGYVSTKHEGDKVIIFE 1251 (1276)
Q Consensus 1210 -esaL-S~~F~~~Ln~l~~~~p~L~-~~~~~~l~nHD~~RVlsf~ 1251 (1276)
...+ ...+...+......++.-. ....+++.|||++|+.+-.
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~nHD~~R~~s~~ 358 (432)
T d1ji1a3 314 NSASISTTQFDSWLRGTRANYPTNVQQSMMNFLSNHDITRFATRS 358 (432)
T ss_dssp CBCCCCHHHHHHHHHHHHTTSCHHHHTTCEEESCCTTSCCHHHHT
T ss_pred ccccccHHHHHHHHHHhHhhcccccccccccccccCCccchhhhc
Confidence 0011 1455666665555444211 1123567899999987643
|
| >d1gcya2 c.1.8.1 (A:1-357) G4-amylase (1,4-alpha-D-glucan maltotetrahydrolase) {Pseudomonas stutzeri [TaxId: 316]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: G4-amylase (1,4-alpha-D-glucan maltotetrahydrolase) species: Pseudomonas stutzeri [TaxId: 316]
Probab=99.97 E-value=2.6e-30 Score=286.12 Aligned_cols=203 Identities=19% Similarity=0.154 Sum_probs=144.9
Q ss_pred CceEEEEecCCccccCccCcHHHHHHhhhhHHHHcCCCCCccceeecccccccccccccceeeccCccccccccccccCC
Q psy9003 895 NLKIYESHVGICTQEQKCASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAESH 974 (1276)
Q Consensus 895 d~vIYElHVr~ft~~~~~Gtf~gl~ek~LdyLK~LGVna~d~wV~LmP~f~~eew~~~~pi~~l~~~Pi~E~~i~~~~S~ 974 (1276)
+.||++.+-......+..|+|.+++++ |||||+||||+ |||+|+++. |.. ...++.
T Consensus 16 ~~~~~~~f~w~~~~~~~~~~~~~i~~k-l~yl~~lGv~a----Iwl~P~~~~---------------~~~----~~~~~~ 71 (357)
T d1gcya2 16 DEIILQGFHWNVVREAPNDWYNILRQQ-AATIAADGFSA----IWMPVPWRD---------------FSS----WSDGSK 71 (357)
T ss_dssp CCCEEECCCTTHHHHSTTTHHHHHHHH-HHHHHHTTCSE----EEECCCSCC---------------CCC----BC---C
T ss_pred CEEEEeeeecCCCCCCCCcHHHHHHHH-HHHHHHcCCCE----EEeCcCeeC---------------Ccc----CCCCCC
Confidence 456666443232234445779999997 99999999999 999977653 110 011122
Q ss_pred CcccCCCccccccccccccccccCCCCCCcccccccccccCCCCCccccccccccCCCCCCHHHHHHHHHHHHHcCCEEE
Q psy9003 975 DQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLYVL 1054 (1276)
Q Consensus 975 ~~~~WGYdp~nyf~~d~~~y~~~S~~~Dp~~~~dap~~~yas~s~hkYt~D~~~ID~~~Gt~eEfK~LV~alHk~GI~VI 1054 (1276)
...+|||++.||. |||+||+.+|||+||++||++||+||
T Consensus 72 ~~~~hgY~~~dy~-----------------------------------------vd~~~Gt~~df~~LV~~aH~~GI~VI 110 (357)
T d1gcya2 72 SGGGEGYFWHDFN-----------------------------------------KNGRYGSDAQLRQAASALGGAGVKVL 110 (357)
T ss_dssp CBCCSSTTCSSSC-----------------------------------------SCSSSCCHHHHHHHHHHHHHTTCEEE
T ss_pred CCCCCCcChhhcc-----------------------------------------cCccCCCHHHHHHHHHHHHhcCCeEE
Confidence 2345677766533 55899999999999999999999999
Q ss_pred EEEeccccCCcccCCCcCCCCCCCcccccCC-CC---------CCCCCCCcCCCCCcHHHHHHHHHHHHHHHHhCCCcEE
Q psy9003 1055 LDVVHSHASKNVLDGLNEFDGTQACFFHDGP-RG---------THPLWDSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGF 1124 (1276)
Q Consensus 1055 LDvV~NHt~~~~~~~~~~f~g~~~~Yy~~~~-~g---------~~~~W~g~~LN~~np~Vr~~Iidsl~~Wv~eygVDGF 1124 (1276)
||+|+||++..+++....+....+.|+.... .+ ....+..++||+++|+|++++++++++|++++|||||
T Consensus 111 lD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~np~v~~~~~~~~~~~~~~~giDGf 190 (357)
T d1gcya2 111 YDVVPNHMNRGYPDKEINLPAGQGFWRNDCADPGNYPNDCDDGDRFIGGDADLNTGHPQVYGMFRDEFTNLRSQYGAGGF 190 (357)
T ss_dssp EEECCSBCCTTCSSCSCCCCSSSSCBGGGSCCCSSSCBTTBSSCCSTTSTTBBCTTSHHHHHHHHHHHHHHHHHSCEEEE
T ss_pred EEEeccccCCCCCccccccccCCCccccccCCCCCCCCCCCccccccccccccCCCCHHHHHHHHHHHHHHHHhcCCCEE
Confidence 9999999999987765443333333332211 00 1111225789999999999999999999999999999
Q ss_pred ccCCccccccccCCCCCCCCCCCccccCCCCCchHHHHHHHHHHHHHhhCCCeEEEEEccCCCCCCc
Q psy9003 1125 RFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASC 1191 (1276)
Q Consensus 1125 RfD~a~~L~~~d~g~g~~~~~~~~~~~~~~~d~~a~~Fl~el~~~Vr~~~PdvilIAE~~s~~p~~~ 1191 (1276)
|||+|.++. ..||+++ ++...|++.++||.|...+...
T Consensus 191 R~Daa~~i~--------------------------~~~~~~~---~~~~~~~~~~~gE~~~~~~~~~ 228 (357)
T d1gcya2 191 RFDFVRGYA--------------------------PERVNSW---MTDSADNSFCVGELWKGPSEYP 228 (357)
T ss_dssp EESCGGGSC--------------------------HHHHHHH---HHHHCTTSEEEECCCCCGGGSC
T ss_pred EEeehhcCC--------------------------HHHHHHH---HhhcCCCceeeeeeccCccchh
Confidence 999999872 2366554 4567899999999987655443
|
| >d1ua7a2 c.1.8.1 (A:4-347) Bacterial alpha-amylase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Bacterial alpha-amylase species: Bacillus subtilis [TaxId: 1423]
Probab=99.96 E-value=1.1e-30 Score=293.32 Aligned_cols=199 Identities=16% Similarity=0.141 Sum_probs=143.4
Q ss_pred CCceEEEEecCCccccCccCcHHHHHHhhhhHHHHcCCCCCccceeecccccccccccccceeeccCccccccccccccC
Q psy9003 894 DNLKIYESHVGICTQEQKCASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAES 973 (1276)
Q Consensus 894 ~d~vIYElHVr~ft~~~~~Gtf~gl~ek~LdyLK~LGVna~d~wV~LmP~f~~eew~~~~pi~~l~~~Pi~E~~i~~~~S 973 (1276)
++-+||+..- +||++++++ ||||++||||+ |||||+++... .. ...+.
T Consensus 4 ~~~~i~~~f~---------~~f~~i~~~-ldyl~~lGv~a----Iwl~Pi~~~~~---------------~~---~~~~~ 51 (344)
T d1ua7a2 4 KSGTILHAWN---------WSFNTLKHN-MKDIHDAGYTA----IQTSPINQVKE---------------GN---QGDKS 51 (344)
T ss_dssp TTSCEEECTT---------BCHHHHHHT-HHHHHHTTCSE----EEECCCEEECC---------------TG---GGCCB
T ss_pred CCCeEEEecC---------CcHHHHHHh-HHHHHHcCCCE----EEeCCCeeCCC---------------cC---CCCCC
Confidence 3457776544 479999997 99999999999 99997765311 00 01111
Q ss_pred CCcccCCCccccccccccccccccCCCCCCcccccccccccCCCCCccccccccccCCCCCCHHHHHHHHHHHHHcCCEE
Q psy9003 974 HDQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLYV 1053 (1276)
Q Consensus 974 ~~~~~WGYdp~nyf~~d~~~y~~~S~~~Dp~~~~dap~~~yas~s~hkYt~D~~~ID~~~Gt~eEfK~LV~alHk~GI~V 1053 (1276)
....+|||+|.+|+ +++ |+||+.+|||+||++||++||+|
T Consensus 52 ~~~~y~gY~~~dy~---------------------~vd-------------------~~~Gt~~df~~LV~~aH~~Gi~V 91 (344)
T d1ua7a2 52 MSNWYWLYQPTSYQ---------------------IGN-------------------RYLGTEQEFKEMCAAAEEYGIKV 91 (344)
T ss_dssp GGGGGGGGCEEEEE---------------------EEE-------------------TTTEEHHHHHHHHHHHHTTTCEE
T ss_pred CCCCccccccccCC---------------------CCC-------------------CCCCCHHHHHHHHHHhcccceeE
Confidence 22357999999998 454 89999999999999999999999
Q ss_pred EEEEeccccCCcccCCCcCCCCCCCcccccCCCCCCCCCC------------CcCCCCCcHHHHHHHHHHHHHHHHhCCC
Q psy9003 1054 LLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWD------------SRLFNYSEIEVLRFLLSNLRWYLDEYQF 1121 (1276)
Q Consensus 1054 ILDvV~NHt~~~~~~~~~~f~g~~~~Yy~~~~~g~~~~W~------------g~~LN~~np~Vr~~Iidsl~~Wv~eygV 1121 (1276)
|||+|+||++.++++........ +.||.... ...+|. .++||+++|+||++|++++++|++ +||
T Consensus 92 ilD~V~NH~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~~l~Dln~~np~Vr~~l~~~~~~w~~-~gi 167 (344)
T d1ua7a2 92 IVDAVINHTTFDYAAISNEVKSI-PNWTHGNT--QIKNWSDRWDVTQNSLLGLYDWNTQNTQVQSYLKRFLERALN-DGA 167 (344)
T ss_dssp EEEECCSBCCSCTTTSCHHHHTS-TTCEEECC--BCCCTTCHHHHHHSBBTTBCEECTTSHHHHHHHHHHHHHHHH-TTC
T ss_pred eeccceeeecCCCchhhccccCC-cccccCCC--CCCCCCCCcCcccCccccCCccccCChHHHHHHHHHHHHHHh-cCC
Confidence 99999999999987654322222 23443221 122232 378999999999999999999997 799
Q ss_pred cEEccCCccccccccCCCCCCCCCCCccccCCCCCchHHHHHHHHHHHHHhhCCCeEEEEEccCCCCCCc
Q psy9003 1122 DGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASC 1191 (1276)
Q Consensus 1122 DGFRfD~a~~L~~~d~g~g~~~~~~~~~~~~~~~d~~a~~Fl~el~~~Vr~~~PdvilIAE~~s~~p~~~ 1191 (1276)
||||||+|.+|.... ...|+++++..+++..| .+++||.|.+.+...
T Consensus 168 DGfR~Daakhv~~~~----------------------~~~~~~~~~~~~~~~~~-~~~~gE~~~~~~~~~ 214 (344)
T d1ua7a2 168 DGFRFDAAKHIELPD----------------------DGSYGSQFWPNITNTSA-EFQYGEILQDSASRD 214 (344)
T ss_dssp CEEEETTGGGSCCTT----------------------SGGGCCSHHHHHTCSSC-SEEEECCCCSTTCCH
T ss_pred CeEEEeeeeccCchh----------------------hHHHHHHHHHHHHhcCC-ceEEEEEeeccchhh
Confidence 999999999884110 11244555566655544 578999987766544
|
| >d2d3na2 c.1.8.1 (A:5-398) Bacterial alpha-amylase {Bacillus sp. 707 [TaxId: 1416]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Bacterial alpha-amylase species: Bacillus sp. 707 [TaxId: 1416]
Probab=99.96 E-value=6.4e-30 Score=288.42 Aligned_cols=209 Identities=18% Similarity=0.214 Sum_probs=146.8
Q ss_pred CceEEEEecCCccccCccCcHHHHHHhhhhHHHHcCCCCCccceeecccccccccccccceeeccCccccccccccccCC
Q psy9003 895 NLKIYESHVGICTQEQKCASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAESH 974 (1276)
Q Consensus 895 d~vIYElHVr~ft~~~~~Gtf~gl~ek~LdyLK~LGVna~d~wV~LmP~f~~eew~~~~pi~~l~~~Pi~E~~i~~~~S~ 974 (1276)
+.||+|.+ .|......|.|++|+++ |||||+||||+ |||+|+|+ . .
T Consensus 2 ~~~~~q~f--~w~~~~~g~~~~~i~~k-LdyL~~LGv~a----IwL~Pi~~--------------------~-------~ 47 (394)
T d2d3na2 2 NGTMMQYF--EWYLPNDGNHWNRLNSD-ASNLKSKGITA----VWIPPAWK--------------------G-------A 47 (394)
T ss_dssp CCCEEECC--CTTCCSSSCHHHHHHHH-HHHHHHHTCCE----EEECCCSE--------------------E-------S
T ss_pred CccEEEEE--ecccCCCCCcHHHHHHH-HHHHHHcCCCE----EEECcCcc--------------------C-------C
Confidence 45677764 22222334889999996 99999999999 99995543 2 1
Q ss_pred CcccCCCccccccccccccccccCCCCCCcccccccccccCCCCCccccccccccCCCCCCHHHHHHHHHHHHHcCCEEE
Q psy9003 975 DQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLYVL 1054 (1276)
Q Consensus 975 ~~~~WGYdp~nyf~~d~~~y~~~S~~~Dp~~~~dap~~~yas~s~hkYt~D~~~ID~~~Gt~eEfK~LV~alHk~GI~VI 1054 (1276)
...+|||++.++| ... .| .....|||+||+++|||+||++||++||+||
T Consensus 48 ~~~~~gY~~~~~y---------------------d~~-~~---------~~~~~vd~~~Gt~~df~~Lv~~aH~~GIkVi 96 (394)
T d2d3na2 48 SQNDVGYGAYDLY---------------------DLG-EF---------NQKGTVRTKYGTRSQLQAAVTSLKNNGIQVY 96 (394)
T ss_dssp STTCCSCSEEETT---------------------CSS-CS---------CBTTBSSBTTBCHHHHHHHHHHHHHTTCEEE
T ss_pred CCCCCCCCcccCc---------------------ccc-cc---------cccCCcCCCCCCHHHHHHHHHHHHHCCCEEE
Confidence 2346899999988 111 00 0223578999999999999999999999999
Q ss_pred EEEeccccCCcccCCC--------------------------cCCCCCC-------CcccccC-----C-----------
Q psy9003 1055 LDVVHSHASKNVLDGL--------------------------NEFDGTQ-------ACFFHDG-----P----------- 1085 (1276)
Q Consensus 1055 LDvV~NHt~~~~~~~~--------------------------~~f~g~~-------~~Yy~~~-----~----------- 1085 (1276)
||+|+||++..+.+.. ..+.+.. ..|++.+ .
T Consensus 97 lDvV~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (394)
T d2d3na2 97 GDVVMNHKGGADATEMVRAVEVNPNNRNQEVTGEYTIEAWTRFDFPGRGNTHSSFKWRWYHFDGVDWDQSRRLNNRIYKF 176 (394)
T ss_dssp EEECCSEECSCSEEEEEEEEEEETTEEEEECSCCEEEEEEEEBCCTTTTTSSCCCCBCGGGEEEESCCTTTCCSSCEEEE
T ss_pred EEEecccccCccccccccccccCcccccccccccccccccccccCccccCCCCccccccccCCCcccccccCCCCCccee
Confidence 9999999986542100 0000000 0111100 0
Q ss_pred CCCCCCC--------------CCcCCCCCcHHHHHHHHHHHHHHHHhCCCcEEccCCccccccccCCCCCCCCCCCcccc
Q psy9003 1086 RGTHPLW--------------DSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYF 1151 (1276)
Q Consensus 1086 ~g~~~~W--------------~g~~LN~~np~Vr~~Iidsl~~Wv~eygVDGFRfD~a~~L~~~d~g~g~~~~~~~~~~~ 1151 (1276)
.+....| ..++||++||+||++|++++++|++++||||||||+|.++.
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~dln~~np~V~~~~~~~~~~w~~~~giDGfR~D~a~~~~------------------ 238 (394)
T d2d3na2 177 RGHGKAWDWEVDTENGNYDYLMYADIDMDHPEVVNELRNWGVWYTNTLGLDGFRIDAVKHIK------------------ 238 (394)
T ss_dssp CSTTCCCCSSCCCTTSCCCCCSSEEECTTCHHHHHHHHHHHHHHHHHHTCSEEEETTGGGSC------------------
T ss_pred cCCCCccccccccccccccccCCcccccCCHHHHHHHHHhhhhhhcccCcceEEecccccCC------------------
Confidence 0001111 13678999999999999999999999999999999998872
Q ss_pred CCCCCchHHHHHHHHHHHHHh-hCCCeEEEEEccCCCCCCcccc
Q psy9003 1152 GLNVDTDALIYLMVANKFLHD-KYPEIITIAEDVSGMPASCRPV 1194 (1276)
Q Consensus 1152 ~~~~d~~a~~Fl~el~~~Vr~-~~PdvilIAE~~s~~p~~~~p~ 1194 (1276)
..||+++.+.+++ ..|+++++||.|...+.....+
T Consensus 239 --------~~~~~~~~~~~~~~~~~~~~~~gE~~~~~~~~~~~~ 274 (394)
T d2d3na2 239 --------YSFTRDWINHVRSATGKNMFAVAEFWKNDLGAIENY 274 (394)
T ss_dssp --------HHHHHHHHHHHHHHHTCCCEEEECCCCSCHHHHHHH
T ss_pred --------hHHHHHHHHHHHHhcCCceeecccccccccccccch
Confidence 3588888888874 5589999999998766655443
|
| >d1g5aa2 c.1.8.1 (A:1-554) Amylosucrase {Neisseria polysaccharea [TaxId: 489]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Amylosucrase species: Neisseria polysaccharea [TaxId: 489]
Probab=99.96 E-value=1.3e-29 Score=302.41 Aligned_cols=208 Identities=16% Similarity=0.205 Sum_probs=155.8
Q ss_pred CCceEEEEecCCccccCccCcHHHHHHhhhhHHHHcCCCCCccceeecccccccccccccceeeccCccccccccccccC
Q psy9003 894 DNLKIYESHVGICTQEQKCASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAES 973 (1276)
Q Consensus 894 ~d~vIYElHVr~ft~~~~~Gtf~gl~ek~LdyLK~LGVna~d~wV~LmP~f~~eew~~~~pi~~l~~~Pi~E~~i~~~~S 973 (1276)
+++++|.++++.|. |+|+|++++ |||||+||||+ |||||+|+ . | .
T Consensus 96 ~~~~~~~~y~~~fg-----GDl~Gi~~k-LdYLk~LGVt~----I~L~Pi~~--------------------~--p-~-- 140 (554)
T d1g5aa2 96 NKQVGGVCYVDLFA-----GDLKGLKDK-IPYFQELGLTY----LHLMPLFK--------------------C--P-E-- 140 (554)
T ss_dssp TTCCEEEECHHHHH-----SSHHHHHTT-HHHHHHHTCSE----EEECCCBC--------------------C--C-S--
T ss_pred cCceeEEEeccccC-----cCHHHHHHh-hHHHHHcCCCE----EEECCCCC--------------------C--C-C--
Confidence 47899999999885 899999997 99999999999 99995553 1 1 1
Q ss_pred CCcccCCCccccccccccccccccCCCCCCcccccccccccCCCCCccccccccccCCCCCCHHHHHHHHHHHHHcCCEE
Q psy9003 974 HDQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLYV 1053 (1276)
Q Consensus 974 ~~~~~WGYdp~nyf~~d~~~y~~~S~~~Dp~~~~dap~~~yas~s~hkYt~D~~~ID~~~Gt~eEfK~LV~alHk~GI~V 1053 (1276)
..++|||++.||+ +++ |+|||++|||+||++||++||+|
T Consensus 141 -~~sd~GY~v~dy~---------------------~Vd-------------------p~lGt~edl~~Lv~~aH~rGI~V 179 (554)
T d1g5aa2 141 -GKSDGGYAVSSYR---------------------DVN-------------------PALGTIGDLREVIAALHEAGISA 179 (554)
T ss_dssp -SCSTTTTSCSCSS---------------------SBC-------------------TTTCCHHHHHHHHHHHHHTTCEE
T ss_pred -CCCCCCcCcccCC---------------------CCC-------------------cccCCHHHHHHHHHHHHHCCCEE
Confidence 2357999999998 444 99999999999999999999999
Q ss_pred EEEEeccccCCcccCCCcCCCCCC---Cccccc-CC------------------CCCCC-----CC-------CCcCCCC
Q psy9003 1054 LLDVVHSHASKNVLDGLNEFDGTQ---ACFFHD-GP------------------RGTHP-----LW-------DSRLFNY 1099 (1276)
Q Consensus 1054 ILDvV~NHt~~~~~~~~~~f~g~~---~~Yy~~-~~------------------~g~~~-----~W-------~g~~LN~ 1099 (1276)
|||+|+|||+..++|+.....+.. .+||.. +. .+... .| ..++||+
T Consensus 180 ilD~V~NHts~~h~w~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~dln~ 259 (554)
T d1g5aa2 180 VVDFIFNHTSNEHEWAQRCAAGDPLFDNFYYIFPDRRMPDQYDRTLREIFPDQHPGGFSQLEDGRWVWTTFNSFQWDLNY 259 (554)
T ss_dssp EEEECCSEEETTSHHHHHHHTTCGGGTTSBCEESSSHHHHHHTTTCCCSSTTTCSTTEEECTTSCEEECSSSTTEEEBCT
T ss_pred EEEECcCCCCCCccchhhhhccCCccccceEEcCCCCCCccccCCCcccCCCCCCcceeecCCCceeecccCCccccccc
Confidence 999999999998876532222211 111111 00 00000 00 1368999
Q ss_pred CcHHHHHHHHHHHHHHHHhCCCcEEccCCccccccccCCCCCCCCCCCccccCCCCCchHHHHHHHHHHHHHhhCCCeEE
Q psy9003 1100 SEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIIT 1179 (1276)
Q Consensus 1100 ~np~Vr~~Iidsl~~Wv~eygVDGFRfD~a~~L~~~d~g~g~~~~~~~~~~~~~~~d~~a~~Fl~el~~~Vr~~~Pdvil 1179 (1276)
+||+|+++|++++++|++ +||||||+|++..+... . +... ...++.+.||+++++.++..+|++++
T Consensus 260 ~np~V~~~~~~~~~~w~~-~gvDGfRlDa~~~~~~~-~--~~~~----------~n~p~~~~~~~~~~~~~~~~~p~~~l 325 (554)
T d1g5aa2 260 SNPWVFRAMAGEMLFLAN-LGVDILRMDAVAFIWKQ-M--GTSC----------ENLPQAHALIRAFNAVMRIAAPAVFF 325 (554)
T ss_dssp TSHHHHHHHHHHHHHHHT-TTCSEEEETTGGGSCCC-T--TSCS----------SSCHHHHHHHHHHHHHHHHHCTTCEE
T ss_pred CCHHHHHHHHhhhhhhhh-ccccccccccchhhccc-c--cccc----------ccCchhhHHHHHHHHHHhhhCCCcee
Confidence 999999999999999995 89999999999988321 0 1000 11245788999999999999999999
Q ss_pred EEEccCCCCCCc
Q psy9003 1180 IAEDVSGMPASC 1191 (1276)
Q Consensus 1180 IAE~~s~~p~~~ 1191 (1276)
+||.|.....+.
T Consensus 326 ~aE~~~~~~~~~ 337 (554)
T d1g5aa2 326 KSEAIVHPDQVV 337 (554)
T ss_dssp EECCCSCHHHHG
T ss_pred eccccCCHHHHH
Confidence 999775433333
|
| >d1e43a2 c.1.8.1 (A:1-393) Bacterial alpha-amylase {Chimera (Bacillus amyloliquefaciens) and (Bacillus licheniformis) [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Bacterial alpha-amylase species: Chimera (Bacillus amyloliquefaciens) and (Bacillus licheniformis) [TaxId: 1390]
Probab=99.96 E-value=4.5e-29 Score=282.52 Aligned_cols=194 Identities=17% Similarity=0.215 Sum_probs=141.7
Q ss_pred ccCcHHHHHHhhhhHHHHcCCCCCccceeecccccccccccccceeeccCccccccccccccCCCcccCCCccccccccc
Q psy9003 911 KCASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAESHDQALVGDKTIAFWLMD 990 (1276)
Q Consensus 911 ~~Gtf~gl~ek~LdyLK~LGVna~d~wV~LmP~f~~eew~~~~pi~~l~~~Pi~E~~i~~~~S~~~~~WGYdp~nyf~~d 990 (1276)
..|+|+||+++ |||||+||||+ |||||+| +. .....+||++.++|
T Consensus 16 ~gg~~~gi~~k-Ldylk~LGvta----I~L~Pi~--------------------~~-------~~~~~~gy~~~~~Y--- 60 (393)
T d1e43a2 16 DGQHWKRLQND-AEHLSDIGITA----VWIPPAY--------------------KG-------LSQSDNGYGPYDLY--- 60 (393)
T ss_dssp SSCHHHHHHHH-HHHHHHHTCCE----EEECCCS--------------------EE-------SSTTCCSSSEEETT---
T ss_pred CCCCHHHHHHH-HHHHHHcCCCE----EEeCcCc--------------------cC-------CCCCCCCCCcccCc---
Confidence 35899999997 99999999999 9999544 22 12346899999998
Q ss_pred cccccccCCCCCCcccccccccccCCCCCccccccccccCCCCCCHHHHHHHHHHHHHcCCEEEEEEeccccCCcccCCC
Q psy9003 991 KEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGL 1070 (1276)
Q Consensus 991 ~~~y~~~S~~~Dp~~~~dap~~~yas~s~hkYt~D~~~ID~~~Gt~eEfK~LV~alHk~GI~VILDvV~NHt~~~~~~~~ 1070 (1276)
.+.. ..++..|||++|+.+|||+||++||++||+||||+|+|||+..+.+..
T Consensus 61 ------------------~~~~----------~~~~~~vd~~~Gt~~df~~Lv~~~H~~Gi~VilD~V~NH~~~~~~~~~ 112 (393)
T d1e43a2 61 ------------------DLGE----------FQQKGTVRTKYGTKSELQDAIGSLHSRNVQVYGDVVLNHKAGADATED 112 (393)
T ss_dssp ------------------CSSC----------SCBTTBSSCSSCCHHHHHHHHHHHHHTTCEEEEEECCSEECCCSEEEE
T ss_pred ------------------cccc----------ccccCccCCCCCCHHHHHHHHHHHHHcCCEEEEEEeeccccCCCcccc
Confidence 2220 012346889999999999999999999999999999999998764321
Q ss_pred --------------------------cCCCCCCC-------ccccc-----------------CCCCCCCCC--------
Q psy9003 1071 --------------------------NEFDGTQA-------CFFHD-----------------GPRGTHPLW-------- 1092 (1276)
Q Consensus 1071 --------------------------~~f~g~~~-------~Yy~~-----------------~~~g~~~~W-------- 1092 (1276)
..+.+... .++.. ...+....|
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (393)
T d1e43a2 113 VTAVEVNPANRNQETSEEYQIKAWTDFRFPGRGNTYSDFKWHWYHFDGADWDESRKISRIFKFRGEGKAWDWEVSSENGN 192 (393)
T ss_dssp EEEEEEETTEEEEECSCCEEEEEEEEBCCTTTTTSSCCCCBCGGGEEEESCBTTTTBCCEEEECSSSCCCCSSSCCTTSC
T ss_pred ccccccCccccccccccccccccccccccCCCCCCCcccccccccCCCCCccccCCcCCcccccCcccccccccccccce
Confidence 00000000 00000 000011111
Q ss_pred ----CCcCCCCCcHHHHHHHHHHHHHHHHhCCCcEEccCCccccccccCCCCCCCCCCCccccCCCCCchHHHHHHHHHH
Q psy9003 1093 ----DSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANK 1168 (1276)
Q Consensus 1093 ----~g~~LN~~np~Vr~~Iidsl~~Wv~eygVDGFRfD~a~~L~~~d~g~g~~~~~~~~~~~~~~~d~~a~~Fl~el~~ 1168 (1276)
..++||++||+|+++|++++++|++++||||||+|++.++. ..||+++.+
T Consensus 193 ~~~~~~pdln~~np~v~~~~~~~~~~w~~~~GiDGfR~Da~~~~~--------------------------~~f~~~~~~ 246 (393)
T d1e43a2 193 YDYLMYADVDYDHPDVVAETKKWGIWYANELSLDGFRIDAAKHIK--------------------------FSFLRDWVQ 246 (393)
T ss_dssp CCCCSSEEECTTCHHHHHHHHHHHHHHHHHHTCCEEEETTGGGSC--------------------------HHHHHHHHH
T ss_pred eccccccccccCChhhhHHHHHHHHhhhhhcCcceEEeeccccCC--------------------------HHHHHHHHH
Confidence 13678999999999999999999999999999999998772 358998887
Q ss_pred HHHh-hCCCeEEEEEccCCCCCCccc
Q psy9003 1169 FLHD-KYPEIITIAEDVSGMPASCRP 1193 (1276)
Q Consensus 1169 ~Vr~-~~PdvilIAE~~s~~p~~~~p 1193 (1276)
.+++ ..|+++++||.|...+.....
T Consensus 247 ~~~~~~~~~~~~~gE~~~~~~~~~~~ 272 (393)
T d1e43a2 247 AVRQATGKEMFTVAEYWQNNAGKLEN 272 (393)
T ss_dssp HHHHHHCSCCEEEECCCCSCHHHHHH
T ss_pred HHHHhcCcceEEeeeecCCcHHhhhh
Confidence 7775 568999999998876655443
|
| >d1ht6a2 c.1.8.1 (A:1-347) Plant alpha-amylase {Barley (Hordeum vulgare), AMY1 isozyme [TaxId: 4513]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Plant alpha-amylase species: Barley (Hordeum vulgare), AMY1 isozyme [TaxId: 4513]
Probab=99.95 E-value=1.1e-28 Score=269.59 Aligned_cols=160 Identities=17% Similarity=0.184 Sum_probs=123.3
Q ss_pred EEEecCCcc-c--cCccCcHHHHHHhhhhHHHHcCCCCCccceeecccccccccccccceeeccCccccccccccccCCC
Q psy9003 899 YESHVGICT-Q--EQKCASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAESHD 975 (1276)
Q Consensus 899 YElHVr~ft-~--~~~~Gtf~gl~ek~LdyLK~LGVna~d~wV~LmP~f~~eew~~~~pi~~l~~~Pi~E~~i~~~~S~~ 975 (1276)
||+-++.|. + ....|+|.+++++ |||||+||||+ |||||+| +.
T Consensus 1 ~~~~~~~f~~~~~~~~~g~~~~i~~k-Ldyl~~lGv~~----i~L~Pi~--------------------~~--------- 46 (347)
T d1ht6a2 1 HQVLFQGFNWESWKQSGGWYNMMMGK-VDDIAAAGVTH----VWLPPPS--------------------HS--------- 46 (347)
T ss_dssp CCCEEECCCTTGGGCTTCHHHHHHTT-HHHHHHTTCCE----EEECCCS--------------------CB---------
T ss_pred CeeEEeccccCcCCCCCCCHHHHHHh-HHHHHHcCCCE----EEECCCC--------------------cC---------
Confidence 567778876 3 4567999999997 99999999999 9999544 22
Q ss_pred cccCCCccccccccccccccccCCCCCCcccccccccccCCCCCccccccccccCC-CCCCHHHHHHHHHHHHHcCCEEE
Q psy9003 976 QALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAG-LFGTPEQLKYLVDECHKAGLYVL 1054 (1276)
Q Consensus 976 ~~~WGYdp~nyf~~d~~~y~~~S~~~Dp~~~~dap~~~yas~s~hkYt~D~~~ID~-~~Gt~eEfK~LV~alHk~GI~VI 1054 (1276)
..+|||++.||+ +++ | ++|+.++|++||++||++||+||
T Consensus 47 ~~~~gY~~~d~~---------------------~id-------------------~~~~G~~~~f~~lv~~~H~~gi~Vi 86 (347)
T d1ht6a2 47 VSNEGYMPGRLY---------------------DID-------------------ASKYGNAAELKSLIGALHGKGVQAI 86 (347)
T ss_dssp SSTTSSSBCCTT---------------------CGG-------------------GCTTCCHHHHHHHHHHHHHTTCEEE
T ss_pred CCCCCCCccCcC---------------------cCC-------------------cccCCCHHHHHHHHHHHhhcceEEe
Confidence 135999999999 443 5 69999999999999999999999
Q ss_pred EEEeccccCCcccCCCc---CCCCCCC-ccccc-------------CCCCCC----CCCCCcCCCCCcHHHHHHHHHHHH
Q psy9003 1055 LDVVHSHASKNVLDGLN---EFDGTQA-CFFHD-------------GPRGTH----PLWDSRLFNYSEIEVLRFLLSNLR 1113 (1276)
Q Consensus 1055 LDvV~NHt~~~~~~~~~---~f~g~~~-~Yy~~-------------~~~g~~----~~W~g~~LN~~np~Vr~~Iidsl~ 1113 (1276)
||+|+||++..+++... .+.+... .|+.. ...+.+ ..+..++||+.+|+||++++++++
T Consensus 87 lD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdln~~n~~v~~~l~~~~~ 166 (347)
T d1ht6a2 87 ADIVINHRCADYKDSRGIYCIFEGGTSDGRLDWGPHMICRDDTKYSDGTANLDTGADFAAAPDIDHLNDRVQRELKEWLL 166 (347)
T ss_dssp EEECCSBCCCSEECTTSCEEECCCSSSSSTTCCCGGGBCTTCTTTCCSCSCCCSSCCCTTSCBBCTTCHHHHHHHHHHHH
T ss_pred eeccccccCCCCcccccccccccCCCCCCCcCcCccccCCCcccccccccccccccccCCCCcccccchhhhhhhhhhhh
Confidence 99999999998876432 1222221 11110 000011 111258999999999999999999
Q ss_pred HHHHhCCCcEEccCCcccc
Q psy9003 1114 WYLDEYQFDGFRFDGVTSM 1132 (1276)
Q Consensus 1114 ~Wv~eygVDGFRfD~a~~L 1132 (1276)
+|++++||||||+|++.++
T Consensus 167 ~wi~~~gvDGfR~D~~~~~ 185 (347)
T d1ht6a2 167 WLKSDLGFDAWRLDFARGY 185 (347)
T ss_dssp HHHHHHCCCEEEETTGGGS
T ss_pred hhcccCCcceEEEechhhc
Confidence 9999999999999999877
|
| >d1hvxa2 c.1.8.1 (A:1-393) Bacterial alpha-amylase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Bacterial alpha-amylase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=99.95 E-value=1.2e-28 Score=278.14 Aligned_cols=208 Identities=19% Similarity=0.211 Sum_probs=142.4
Q ss_pred CceEEEEecCCccccCccCcHHHHHHhhhhHHHHcCCCCCccceeecccccccccccccceeeccCccccccccccccCC
Q psy9003 895 NLKIYESHVGICTQEQKCASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAESH 974 (1276)
Q Consensus 895 d~vIYElHVr~ft~~~~~Gtf~gl~ek~LdyLK~LGVna~d~wV~LmP~f~~eew~~~~pi~~l~~~Pi~E~~i~~~~S~ 974 (1276)
+-||.+.. .+-.....|.|.+++++ |||||+||||+ |||+|+|+ . +
T Consensus 5 ~~~~~~~f--~w~~~~~~~~~~~i~~k-LdyLk~LGv~a----I~L~Pi~~--------------------~--~----- 50 (393)
T d1hvxa2 5 NGTMMQYF--EWYLPDDGTLWTKVANE-ANNLSSLGITA----LWLPPAYK--------------------G--T----- 50 (393)
T ss_dssp CCCEEECC--CTTCCSSSCHHHHHHHH-HHHHHHTTCCE----EEECCCSE--------------------E--S-----
T ss_pred CceEEEeE--eeccCCCCChHHHHHHH-HHHHHHcCCCE----EEECCCCc--------------------C--C-----
Confidence 44555444 22112345789999996 99999999999 99995543 2 1
Q ss_pred CcccCCCccccccccccccccccCCCCCCcccccccccccCCCCCccccccccccCCCCCCHHHHHHHHHHHHHcCCEEE
Q psy9003 975 DQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLYVL 1054 (1276)
Q Consensus 975 ~~~~WGYdp~nyf~~d~~~y~~~S~~~Dp~~~~dap~~~yas~s~hkYt~D~~~ID~~~Gt~eEfK~LV~alHk~GI~VI 1054 (1276)
...+|||++.+|| .+.+.+ .+..|||+||+.+|||+||++||++||+||
T Consensus 51 ~~~~~GY~~~d~y---------------------~~~~~~----------~~~~vd~~~Gt~~df~~LV~~aH~~GIkVI 99 (393)
T d1hvxa2 51 SRSDVGYGVYDLY---------------------DLGEFN----------QKGAVRTKYGTKAQYLQAIQAAHAAGMQVY 99 (393)
T ss_dssp STTCCSSSEEETT---------------------CSSCSC----------BTTBSSCSSCCHHHHHHHHHHHHHTTCEEE
T ss_pred CCCCCCCCccCcc---------------------cccccc----------ccCCcCCCCCCHHHHHHHHHHHHHCCCEEE
Confidence 2345999999999 222111 123578999999999999999999999999
Q ss_pred EEEeccccCCc--ccCCC------------------------cCCCCCC-------CcccccC---------------CC
Q psy9003 1055 LDVVHSHASKN--VLDGL------------------------NEFDGTQ-------ACFFHDG---------------PR 1086 (1276)
Q Consensus 1055 LDvV~NHt~~~--~~~~~------------------------~~f~g~~-------~~Yy~~~---------------~~ 1086 (1276)
||+|+|||+.. +.|.. ..+.+.. ..|++.+ ..
T Consensus 100 lDvV~NHt~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (393)
T d1hvxa2 100 ADVVFDHKGGADGTEWVDAVEVNPSDRNQEISGTYQIQAWTKFDFPGRGNTYSSFKWRWYHFDGVDWDESRKLSRIYKFR 179 (393)
T ss_dssp EEECCSEECCCSEEEEEEEEEEETTEEEEECSCCEEEEEEEEBCCTTTTTSSCCCCBCGGGEEEEEEETTTTEEEEEEEC
T ss_pred EEEecccccccCCccceeecccCccccccccCCCcccccccccCCCCCCCCCCCcccccccCCCCcccccCCcCcccccc
Confidence 99999999752 11110 0000000 0011000 00
Q ss_pred CCCCCC--------------CCcCCCCCcHHHHHHHHHHHHHHHHhCCCcEEccCCccccccccCCCCCCCCCCCccccC
Q psy9003 1087 GTHPLW--------------DSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFG 1152 (1276)
Q Consensus 1087 g~~~~W--------------~g~~LN~~np~Vr~~Iidsl~~Wv~eygVDGFRfD~a~~L~~~d~g~g~~~~~~~~~~~~ 1152 (1276)
+....| ..++||++||+|+++|++++++|++++||||||+|++.++.
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~dln~~np~V~~~l~~~~~~w~~~~giDGfR~D~a~~i~------------------- 240 (393)
T d1hvxa2 180 GIGKAWDWEVDTENGNYDYLMYADLDMDHPEVVTELKSWGKWYVNTTNIDGFRLDAVKHIK------------------- 240 (393)
T ss_dssp STTCCCCSSCCCTTSCCCCCSSEEECTTCHHHHHHHHHHHHHHHHHHCCCEEEETTGGGSC-------------------
T ss_pred CCcCccccccccccceeeccccceeccCChHHHHHHHHHHHHHHHhhCCceeeeeccccCC-------------------
Confidence 111111 13679999999999999999999999999999999999882
Q ss_pred CCCCchHHHHHHHHHHHHHhh-CCCeEEEEEccCCCCCCccc
Q psy9003 1153 LNVDTDALIYLMVANKFLHDK-YPEIITIAEDVSGMPASCRP 1193 (1276)
Q Consensus 1153 ~~~d~~a~~Fl~el~~~Vr~~-~PdvilIAE~~s~~p~~~~p 1193 (1276)
..||+++.+.+++. .++++++||.|...+.....
T Consensus 241 -------~~f~~~~~~~~~~~~~~~~~~~gE~~~~~~~~~~~ 275 (393)
T d1hvxa2 241 -------FSFFPDWLSYVRSQTGKPLFTVGEYWSYDINKLHN 275 (393)
T ss_dssp -------TTHHHHHHHHHHHHHCCCCEEEECCCCSCHHHHHH
T ss_pred -------hhHHHHHHHHHHHhcCCcceeeeeccCccHHHHHH
Confidence 23788877777654 45788999998876554433
|
| >d1mxga2 c.1.8.1 (A:1-361) Bacterial alpha-amylase {Archaeon Pyrococcus woesei [TaxId: 2262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Bacterial alpha-amylase species: Archaeon Pyrococcus woesei [TaxId: 2262]
Probab=99.95 E-value=5.7e-29 Score=279.30 Aligned_cols=216 Identities=18% Similarity=0.162 Sum_probs=144.7
Q ss_pred CCceEEEEecCCccccCccCcHHHHHHhhhhHHHHcCCCCCccceeecccccccccccccceeeccCccccccccccccC
Q psy9003 894 DNLKIYESHVGICTQEQKCASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAES 973 (1276)
Q Consensus 894 ~d~vIYElHVr~ft~~~~~Gtf~gl~ek~LdyLK~LGVna~d~wV~LmP~f~~eew~~~~pi~~l~~~Pi~E~~i~~~~S 973 (1276)
++-+|++.+-. ......|.|+||+++ |||||+||||+ |||+|+++ . +
T Consensus 8 ~~~~~~q~f~w--~~~~~~~~~~gi~~k-Ldylk~LGv~~----Iwl~Pv~~--------------------~--~---- 54 (361)
T d1mxga2 8 EGGVIMQAFYW--DVPGGGIWWDHIRSK-IPEWYEAGISA----IWLPPPSK--------------------G--M---- 54 (361)
T ss_dssp GTCCEEECCCT--TCCCSSCHHHHHHHH-HHHHHHHTCCE----EECCCCSE--------------------E--T----
T ss_pred cCCEEEEeeec--CCCCCCchHHHHHHH-HHHHHhcCCCE----EEeCcCee--------------------C--C----
Confidence 35677765332 122334668999996 99999999999 99995543 2 0
Q ss_pred CCcccCCCccccccccccccccccCCCCCCcccccccccccCCCCCccccccccccCCCCCCHHHHHHHHHHHHHcCCEE
Q psy9003 974 HDQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLYV 1053 (1276)
Q Consensus 974 ~~~~~WGYdp~nyf~~d~~~y~~~S~~~Dp~~~~dap~~~yas~s~hkYt~D~~~ID~~~Gt~eEfK~LV~alHk~GI~V 1053 (1276)
....+|||++.+|| .+.+.++ ..+|||+||+.++|++||++||++||+|
T Consensus 55 ~~~~~~gY~~~dy~---------------------~~~~~~~----------~~~vd~~~Gt~~d~~~LV~~aH~~GikV 103 (361)
T d1mxga2 55 SGGYSMGYDPYDYF---------------------DLGEYYQ----------KGTVETRFGSKEELVRLIQTAHAYGIKV 103 (361)
T ss_dssp TGGGCCSSSEEETT---------------------CSSCSCB----------TTBSSCSSCCHHHHHHHHHHHHHTTCEE
T ss_pred CCCCCCCCCccccc---------------------ccCcccc----------ccCCCCCCCCHHHHHHHHHHHHHCCCEE
Confidence 12356999999999 2221111 1257799999999999999999999999
Q ss_pred EEEEeccccCCcccCCC--------cCCCCCCC-----cccccCCCC---C-CCC-CCCcCCCCCcHHHHHHHHH---HH
Q psy9003 1054 LLDVVHSHASKNVLDGL--------NEFDGTQA-----CFFHDGPRG---T-HPL-WDSRLFNYSEIEVLRFLLS---NL 1112 (1276)
Q Consensus 1054 ILDvV~NHt~~~~~~~~--------~~f~g~~~-----~Yy~~~~~g---~-~~~-W~g~~LN~~np~Vr~~Iid---sl 1112 (1276)
|||+|+||++..+.+.. ..+....+ .|....+.. . ... +.-+++++.++.++.++.+ .+
T Consensus 104 IlD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~~~ 183 (361)
T d1mxga2 104 IADVVINHRAGGDLEWNPFVGDYTWTDFSKVASGKYTANYLDFHPNELHCCDEGTFGGFPDICHHKEWDQYWLWKSNESY 183 (361)
T ss_dssp EEEECCSBCCCCEEEEETTTTEEEEEECTTCTTCCSCCCGGGBSSSSSCSCCSCCCTTSCBBCTTSHHHHHHHTSSTTSH
T ss_pred EEEeeeccccCCccccCCccccccccccccccCCCCCccccccCcccccccccccccCcccccCCcchhHHHHHHHHHHH
Confidence 99999999987653221 01111111 111101100 0 011 1237899999999999964 46
Q ss_pred HHHHHhCCCcEEccCCccccccccCCCCCCCCCCCccccCCCCCchHHHHHHHHHHHHHhhCCCeEEEEEccCCCCCCcc
Q psy9003 1113 RWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCR 1192 (1276)
Q Consensus 1113 ~~Wv~eygVDGFRfD~a~~L~~~d~g~g~~~~~~~~~~~~~~~d~~a~~Fl~el~~~Vr~~~PdvilIAE~~s~~p~~~~ 1192 (1276)
.+|++++||||||+|++.++. ..||+++.+.+ ...+|||.|...+....
T Consensus 184 ~~~~~~~giDGfR~Daa~~v~--------------------------~~f~~~~~~~~-----~~~~~gE~~~~~~~~~~ 232 (361)
T d1mxga2 184 AAYLRSIGFDGWRFDYVKGYG--------------------------AWVVRDWLNWW-----GGWAVGEYWDTNVDALL 232 (361)
T ss_dssp HHHHHHTTCCEEEETTGGGSC--------------------------HHHHHHHHHHH-----CCCEEECCCCSCHHHHH
T ss_pred hhhhhhcCCcceeecchhhCC--------------------------HHHHHHHHhhc-----CCceecccccCCHHHHh
Confidence 688889999999999999882 34888887644 45789999987665554
Q ss_pred ccc--cCCcccCcc
Q psy9003 1193 PVT--EGGTGFDYR 1204 (1276)
Q Consensus 1193 p~~--~gglGFD~~ 1204 (1276)
.+. .+...|||.
T Consensus 233 ~~~~~~~~~~~df~ 246 (361)
T d1mxga2 233 SWAYESGAKVFDFP 246 (361)
T ss_dssp HHHHHHTSEEECHH
T ss_pred hhhhccCCccccch
Confidence 432 223346654
|
| >d1jaea2 c.1.8.1 (A:1-378) Animal alpha-amylase {Yellow mealworm (Tenebrio molitor), larva [TaxId: 7067]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Animal alpha-amylase species: Yellow mealworm (Tenebrio molitor), larva [TaxId: 7067]
Probab=99.94 E-value=8.4e-28 Score=270.32 Aligned_cols=186 Identities=15% Similarity=0.096 Sum_probs=131.6
Q ss_pred cHHHHHHhhhhHHHHcCCCCCccceeecccccccccccccceeeccCccccccccccccCCCcccCCCcccccccccccc
Q psy9003 914 SYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAESHDQALVGDKTIAFWLMDKEM 993 (1276)
Q Consensus 914 tf~gl~ek~LdyLK~LGVna~d~wV~LmP~f~~eew~~~~pi~~l~~~Pi~E~~i~~~~S~~~~~WGYdp~nyf~~d~~~ 993 (1276)
+|.+|++++.+||++||||+ ||||| +.|+ +..++ ..++|||+|.+|.
T Consensus 20 ~~~~i~~~~~~yl~~lG~ta----i~l~P--------------------~~e~--~~~~~-~~~~~~Y~~~dY~------ 66 (378)
T d1jaea2 20 KWNDIADECERFLQPQGFGG----VQISP--------------------PNEY--LVADG-RPWWERYQPVSYI------ 66 (378)
T ss_dssp CHHHHHHHHHHTTTTTTEEE----EECCC--------------------CSCB--BCCTT-CCGGGGGSBCCSC------
T ss_pred cHHHHHHHHHHHHHHhCCCE----EEeCc--------------------cccc--CCCCC-CCCccccCCccce------
Confidence 59999998445999999999 99994 4443 11111 2345677776643
Q ss_pred ccccCCCCCCcccccccccccCCCCCccccccccccCCCCCCHHHHHHHHHHHHHcCCEEEEEEeccccCCcccCCCc--
Q psy9003 994 YTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLN-- 1071 (1276)
Q Consensus 994 y~~~S~~~Dp~~~~dap~~~yas~s~hkYt~D~~~ID~~~Gt~eEfK~LV~alHk~GI~VILDvV~NHt~~~~~~~~~-- 1071 (1276)
|||+||+++|||+||++||++||+||||+|+||++..+.++..
T Consensus 67 -----------------------------------id~~~Gt~~df~~LV~~aH~~GI~VilDvV~NH~~~~~~~~~~~~ 111 (378)
T d1jaea2 67 -----------------------------------INTRSGDESAFTDMTRRCNDAGVRIYVDAVINHMTGMNGVGTSGS 111 (378)
T ss_dssp -----------------------------------SEETTEEHHHHHHHHHHHHHTTCEEEEEECCSBCCSSCEEBTTSC
T ss_pred -----------------------------------eCCCCCCHHHHHHHHHHHHhcCceeeeeecccccccccCCCcccc
Confidence 4489999999999999999999999999999999988755421
Q ss_pred CCCCCCCcccc-------cCCCCCCCCCC------------CcCCCCCcHHHHHHHHHHHHHHHHhCCCcEEccCCcccc
Q psy9003 1072 EFDGTQACFFH-------DGPRGTHPLWD------------SRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSM 1132 (1276)
Q Consensus 1072 ~f~g~~~~Yy~-------~~~~g~~~~W~------------g~~LN~~np~Vr~~Iidsl~~Wv~eygVDGFRfD~a~~L 1132 (1276)
.++.....++. ..+.....+|. .++||+++|+||++|++++++|++ +||||||||++.+|
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dln~~np~V~~~l~~~~~~w~e-~gvDGfR~Daa~~i 190 (378)
T d1jaea2 112 SADHDGMNYPAVPYGSGDFHSPCEVNNYQDADNVRNCELVGLRDLNQGSDYVRGVLIDYMNHMID-LGVAGFRVDAAKHM 190 (378)
T ss_dssp EEBTTTTBBTTTTBCGGGBCCCCBCCCTTCHHHHHHSBBTTBCBBCTTSHHHHHHHHHHHHHHHH-TTCCEEEETTGGGS
T ss_pred ccCCCcccCcCCCCCccccCCCCCcCCCCCccccccccccccCccccCCHHHHHHHHHHHHHHHH-hCCCceeeeeeccc
Confidence 11111111100 01111122232 278999999999999999999995 99999999999988
Q ss_pred ccccCCCCCCCCCCCccccCCCCCchHHHHHHHHHHHHHhhC--------CCeEEEEEccCCCCCCcccc
Q psy9003 1133 LYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKY--------PEIITIAEDVSGMPASCRPV 1194 (1276)
Q Consensus 1133 ~~~d~g~g~~~~~~~~~~~~~~~d~~a~~Fl~el~~~Vr~~~--------PdvilIAE~~s~~p~~~~p~ 1194 (1276)
. ..||+.+.+.++... ++..+++|.+...+....+.
T Consensus 191 ~--------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gE~~~~~~~~~~~~ 234 (378)
T d1jaea2 191 S--------------------------PGDLSVIFSGLKNLNTDYGFADGARPFIYQEVIDLGGEAISKN 234 (378)
T ss_dssp C--------------------------HHHHHHHHHTCCCCCGGGTCCTTCCCEEEEECCCCSSSSCCGG
T ss_pred C--------------------------HHHHHHHHHhhhhhccccccccccccceeeehhccccccccch
Confidence 3 236777666665443 35789999887766554443
|
| >d1g94a2 c.1.8.1 (A:1-354) Bacterial alpha-amylase {Pseudoalteromonas haloplanktis (Alteromonas haloplanktis) [TaxId: 228]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Bacterial alpha-amylase species: Pseudoalteromonas haloplanktis (Alteromonas haloplanktis) [TaxId: 228]
Probab=99.94 E-value=2.2e-27 Score=264.61 Aligned_cols=181 Identities=13% Similarity=0.110 Sum_probs=130.9
Q ss_pred cHHHHHHhhhhHHHHcCCCCCccceeecccccccccccccceeeccCccccccccccccCCCcccCCCcccccccccccc
Q psy9003 914 SYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAESHDQALVGDKTIAFWLMDKEM 993 (1276)
Q Consensus 914 tf~gl~ek~LdyLK~LGVna~d~wV~LmP~f~~eew~~~~pi~~l~~~Pi~E~~i~~~~S~~~~~WGYdp~nyf~~d~~~ 993 (1276)
.|++|++++.+||++||||+ ||||| +.++ +.. ...+|||+|.+ |
T Consensus 12 ~~~~i~~~~~dyl~~lG~ta----i~l~P--------------------~~~~--~~~---~~~y~gY~~~d-y------ 55 (354)
T d1g94a2 12 NWQDVAQECEQYLGPKGYAA----VQVSP--------------------PNEH--ITG---SQWWTRYQPVS-Y------ 55 (354)
T ss_dssp CHHHHHHHHHHTHHHHTCCE----EEECC--------------------CSCB--BCS---SSGGGGGSBSC-S------
T ss_pred CHHHHHHHHHHHHHHcCCCE----EEeCc--------------------CccC--CCC---CCCcccCCCCc-c------
Confidence 38999998779999999999 99994 4433 211 23456888877 4
Q ss_pred ccccCCCCCCcccccccccccCCCCCccccccccccCCCCCCHHHHHHHHHHHHHcCCEEEEEEeccccCCcccCCCcC-
Q psy9003 994 YTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNE- 1072 (1276)
Q Consensus 994 y~~~S~~~Dp~~~~dap~~~yas~s~hkYt~D~~~ID~~~Gt~eEfK~LV~alHk~GI~VILDvV~NHt~~~~~~~~~~- 1072 (1276)
+ |||+||+.+|||+||++||++||+||||+|+||++.++.++...
T Consensus 56 ---------------~-------------------vd~~~Gt~~dfk~LV~~aH~~GI~VilDvV~NH~~~~~~~~~~~~ 101 (354)
T d1g94a2 56 ---------------E-------------------LQSRGGNRAQFIDMVNRCSAAGVDIYVDTLINHMAAGSGTGTAGN 101 (354)
T ss_dssp ---------------C-------------------SCBTTBCHHHHHHHHHHHHHTTCEEEEEEECSEECSSCEEBTTSC
T ss_pred ---------------e-------------------eCCCCCCHHHHHHHHHHHhccCceeEEEeeccccccccCCCcccc
Confidence 2 44899999999999999999999999999999999987654311
Q ss_pred --CCCCCC----cccccCCCCCCC------------CC-CCcCCCCCcHHHHHHHHHHHHHHHHhCCCcEEccCCccccc
Q psy9003 1073 --FDGTQA----CFFHDGPRGTHP------------LW-DSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSML 1133 (1276)
Q Consensus 1073 --f~g~~~----~Yy~~~~~g~~~------------~W-~g~~LN~~np~Vr~~Iidsl~~Wv~eygVDGFRfD~a~~L~ 1133 (1276)
+....+ .+|+........ .+ +.++||+++|.||++|++++++|++ +||||||+|++.++.
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dln~~n~~Vr~~l~d~~~~~~e-~gvdGfR~Da~~~~~ 180 (354)
T d1g94a2 102 SFGNKSFPIYSPQDFHESCTINNSDYGNDRYRVQNCELVGLADLDTASNYVQNTIAAYINDLQA-IGVKGFRFDASKHVA 180 (354)
T ss_dssp EEBTTBCSSCCGGGBCCCCBCCTTHHHHCHHHHHHSBSTTCEEBCTTSHHHHHHHHHHHHHHHH-HTCCEEEEETGGGSC
T ss_pred cccccCCCcCCccccccCCCCCCccccccccceeccccCCCCccccCCHHHHHHHHHHHHHhhh-hccchhhccchhhCC
Confidence 111111 111111000000 01 1368999999999999999998885 899999999999882
Q ss_pred cccCCCCCCCCCCCccccCCCCCchHHHHHHHHHHHHHhhCCCeEEEEEccCCCCCCcccc
Q psy9003 1134 YHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPV 1194 (1276)
Q Consensus 1134 ~~d~g~g~~~~~~~~~~~~~~~d~~a~~Fl~el~~~Vr~~~PdvilIAE~~s~~p~~~~p~ 1194 (1276)
..||+.+. .+..++..+++|.|...+......
T Consensus 181 --------------------------~~~~~~~~---~~~~~~~~~~~e~~~~~~~~~~~~ 212 (354)
T d1g94a2 181 --------------------------ASDIQSLM---AKVNGSPVVFQEVIDQGGEAVGAS 212 (354)
T ss_dssp --------------------------HHHHHHHH---HTSCSCCEEEECCCCSSCCSSCGG
T ss_pred --------------------------HHHHHHHH---hhhcccceeEEEEeccCcccccch
Confidence 24776665 456778899999988777655443
|
| >d1ud2a2 c.1.8.1 (A:1-390) Bacterial alpha-amylase {Bacillus sp., ksm-k38 [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Bacterial alpha-amylase species: Bacillus sp., ksm-k38 [TaxId: 1409]
Probab=99.93 E-value=1.6e-25 Score=245.05 Aligned_cols=189 Identities=19% Similarity=0.238 Sum_probs=134.8
Q ss_pred cCcHHHHHHhhhhHHHHcCCCCCccceeecccccccccccccceeeccCccccccccccccCCCcccCCCcccccccccc
Q psy9003 912 CASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAESHDQALVGDKTIAFWLMDK 991 (1276)
Q Consensus 912 ~Gtf~gl~ek~LdyLK~LGVna~d~wV~LmP~f~~eew~~~~pi~~l~~~Pi~E~~i~~~~S~~~~~WGYdp~nyf~~d~ 991 (1276)
.|+|++++++ |||||+||||+ |||||+|+ . + ...+|||++.+||
T Consensus 19 ~~~~~~i~~k-LdyLk~LGvt~----I~l~Pi~~--------------------~--~-----~~~~~gY~~~d~~---- 62 (390)
T d1ud2a2 19 GQHWNRLHDD-AAALSDAGITA----IWIPPAYK--------------------G--N-----SQADVGYGAYDLY---- 62 (390)
T ss_dssp SCHHHHHHHH-HHHHHHHTCCE----EEECCCSE--------------------E--S-----STTCCSSSEEETT----
T ss_pred CCCHHHHHHH-HHHHHHcCCCE----EEeCCCcc--------------------C--C-----CCCCCCCCccCCc----
Confidence 4899999997 99999999999 99995543 2 1 1245999999999
Q ss_pred ccccccCCCCCCcccccccccccCCCCCccccccccccCCCCCCHHHHHHHHHHHHHcCCEEEEEEeccccCCcccCCCc
Q psy9003 992 EMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLN 1071 (1276)
Q Consensus 992 ~~y~~~S~~~Dp~~~~dap~~~yas~s~hkYt~D~~~ID~~~Gt~eEfK~LV~alHk~GI~VILDvV~NHt~~~~~~~~~ 1071 (1276)
++... .+.+++||++|+++|||+||++||++||+||||||+|||+..+.+...
T Consensus 63 -----------------~~~~~----------~~~~~vd~~~Gt~~efk~lV~~~H~~GI~VilDvV~NHt~~~~~~~~~ 115 (390)
T d1ud2a2 63 -----------------DLGEF----------NQKGTVRTKYGTKAQLERAIGSLKSNDINVYGDVVMNHKMGADFTEAV 115 (390)
T ss_dssp -----------------CSSCS----------CBTTBSSCSSCCHHHHHHHHHHHHHTTCEEEEEECCSEECCCSEEEEE
T ss_pred -----------------ccccc----------cccCCcCCCCCCHHHHHHHHHHHHhcCCceEEEEccccccCcccchhh
Confidence 22210 133567899999999999999999999999999999999987643210
Q ss_pred --------------------------CCCCCC-------Cccccc-----------------CCC----------CCCCC
Q psy9003 1072 --------------------------EFDGTQ-------ACFFHD-----------------GPR----------GTHPL 1091 (1276)
Q Consensus 1072 --------------------------~f~g~~-------~~Yy~~-----------------~~~----------g~~~~ 1091 (1276)
.+.+.. ..+++. ... +....
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (390)
T d1ud2a2 116 QAVQVNPTNRWQDISGAYTIDAWTGFDFSGRNNAYSDFKWRWFHFNGVDWDQRYQENHIFRFANTNWNWRVDEENGNYDY 195 (390)
T ss_dssp EEEEEETTEEEEECSCCEEEEEEEEBCCGGGTTSSCCCCBCGGGEEEEEEETTTTEEEEEEETTCCCCSSCCCTTSCCCC
T ss_pred hhcccCcccccccccccccccccccccCCccCCcCCCCcccccccCCCCccccCCCCceeeccCCccccccccccccccc
Confidence 000000 011100 000 00001
Q ss_pred CCCcCCCCCcHHHHHHHHHHHHHHHHhCCCcEEccCCccccccccCCCCCCCCCCCccccCCCCCchHHHHHHHHHHHH-
Q psy9003 1092 WDSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFL- 1170 (1276)
Q Consensus 1092 W~g~~LN~~np~Vr~~Iidsl~~Wv~eygVDGFRfD~a~~L~~~d~g~g~~~~~~~~~~~~~~~d~~a~~Fl~el~~~V- 1170 (1276)
-..+++|+.+|.+++++.+++.+|+.++|+||||+|++..+. ..|+..+....
T Consensus 196 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~dg~r~D~~~~~~--------------------------~~~~~~~~~~~~ 249 (390)
T d1ud2a2 196 LLGSNIDFSHPEVQDELKDWGSWFTDELDLDGYRLDAIKHIP--------------------------FWYTSDWVRHQR 249 (390)
T ss_dssp CSSEEECTTSHHHHHHHHHHHHHHHHHHTCSEEEETTGGGSC--------------------------HHHHHHHHHHHH
T ss_pred cccccccccCHHHHHHHHHhhhhccceeccccccccchhhcC--------------------------hHHHHHHHHHHh
Confidence 113678999999999999999999999999999999988762 23566655444
Q ss_pred HhhCCCeEEEEEccCCCCC
Q psy9003 1171 HDKYPEIITIAEDVSGMPA 1189 (1276)
Q Consensus 1171 r~~~PdvilIAE~~s~~p~ 1189 (1276)
+...+.+.+++|.+.....
T Consensus 250 ~~~~~~~~~~~e~~~~~~~ 268 (390)
T d1ud2a2 250 NEADQDLFVVGEYWKDDVG 268 (390)
T ss_dssp HHCSSCCEEEECCCCSCHH
T ss_pred hhhhhheeeeccccCCccc
Confidence 4566888999998765443
|
| >d1hx0a2 c.1.8.1 (A:1-403) Animal alpha-amylase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Animal alpha-amylase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.92 E-value=7.2e-26 Score=256.21 Aligned_cols=203 Identities=14% Similarity=0.140 Sum_probs=139.3
Q ss_pred CceEEEEecCCccccCccCcHHHHHHhhhhHHHHcCCCCCccceeecccccccccccccceeeccCccccccccccccCC
Q psy9003 895 NLKIYESHVGICTQEQKCASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAESH 974 (1276)
Q Consensus 895 d~vIYElHVr~ft~~~~~Gtf~gl~ek~LdyLK~LGVna~d~wV~LmP~f~~eew~~~~pi~~l~~~Pi~E~~i~~~~S~ 974 (1276)
..+|+++.- + +|.+++.++.+||++||||+ |||||+. ++..+..+ .
T Consensus 10 ~~~i~~~f~--w-------~~~~i~~e~~~yL~~lG~ta----Iwl~P~~--------------------e~~~~~~~-~ 55 (403)
T d1hx0a2 10 RTSIVHLFE--W-------RWVDIALECERYLGPKGFGG----VQVSPPN--------------------ENIVVTNP-S 55 (403)
T ss_dssp CCEEEEETT--C-------CHHHHHHHHHHTTTTTTCCE----EEECCCS--------------------CBBCCTTT-T
T ss_pred CeeEEEeec--C-------cHHHHHHHHHHHHHHhCCCE----EEeCcCc--------------------cCccCCCC-C
Confidence 467775533 3 48999988779999999999 9999543 32001011 1
Q ss_pred CcccCCCccccccccccccccccCCCCCCcccccccccccCCCCCccccccccccCCCCCCHHHHHHHHHHHHHcCCEEE
Q psy9003 975 DQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLYVL 1054 (1276)
Q Consensus 975 ~~~~WGYdp~nyf~~d~~~y~~~S~~~Dp~~~~dap~~~yas~s~hkYt~D~~~ID~~~Gt~eEfK~LV~alHk~GI~VI 1054 (1276)
...++||+|.+ | +|||+||+++|||+||++||++||+||
T Consensus 56 ~~~y~gY~~~d-Y----------------------------------------~v~~~~Gt~~dfk~Lv~~aH~~GI~VI 94 (403)
T d1hx0a2 56 RPWWERYQPVS-Y----------------------------------------KLCTRSGNENEFRDMVTRCNNVGVRIY 94 (403)
T ss_dssp SCGGGGGSBSC-S----------------------------------------CSCBTTBCHHHHHHHHHHHHHTTCEEE
T ss_pred CCCceeecCCC-C----------------------------------------ccCCCCCCHHHHHHHHHHHHhcCCEEE
Confidence 12344777766 3 245899999999999999999999999
Q ss_pred EEEeccccCCcccCCCcCCC-CCC--C------------cccccC----CCCCCCCCC------------CcCCCCCcHH
Q psy9003 1055 LDVVHSHASKNVLDGLNEFD-GTQ--A------------CFFHDG----PRGTHPLWD------------SRLFNYSEIE 1103 (1276)
Q Consensus 1055 LDvV~NHt~~~~~~~~~~f~-g~~--~------------~Yy~~~----~~g~~~~W~------------g~~LN~~np~ 1103 (1276)
||+|+||++.++.+...... +.. . ..|... ..+....|. .++||++||.
T Consensus 95 lDvV~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pDLn~~np~ 174 (403)
T d1hx0a2 95 VDAVINHMCGSGAAAGTGTTCGSYCNPGNREFPAVPYSAWDFNDGKCKTASGGIESYNDPYQVRDCQLVGLLDLALEKDY 174 (403)
T ss_dssp EEECCSEEEETTCCCBSCBSSCCCBBGGGTBBTTTTBCGGGBCTTTCCSTTSBCCCTTCHHHHHHSBGGGEEEBCTTSHH
T ss_pred EEEecccccccccccccccccCcccccccccCCCCCCCCccCCCCcccCCCCCccccCCccceeeccccccCcccCCCHH
Confidence 99999999988755421111 000 0 001110 011122332 2689999999
Q ss_pred HHHHHHHHHHHHHHhCCCcEEccCCccccccccCCCCCCCCCCCccccCCCCCchHHHHHHHHHHHHHhhC-------CC
Q psy9003 1104 VLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKY-------PE 1176 (1276)
Q Consensus 1104 Vr~~Iidsl~~Wv~eygVDGFRfD~a~~L~~~d~g~g~~~~~~~~~~~~~~~d~~a~~Fl~el~~~Vr~~~-------Pd 1176 (1276)
||+++++++++|++ +||||||+|++.++. ..||+.+...++... ++
T Consensus 175 Vr~~~~~~l~~~~~-~GvdGfR~Da~~~~~--------------------------~~~~~~~~~~~~~~~~~~~~~~~~ 227 (403)
T d1hx0a2 175 VRSMIADYLNKLID-IGVAGFRIDASKHMW--------------------------PGDIKAVLDKLHNLNTNWFPAGSR 227 (403)
T ss_dssp HHHHHHHHHHHHHH-HTCCEEEETTGGGSC--------------------------HHHHHHHHTTCCCCCTTTSCTTCC
T ss_pred HHHHHHHHHHHHHH-cCCCccccccccccC--------------------------HHHHHHHHHHHHhhCcccccccCC
Confidence 99999999999996 799999999998873 236666665554433 45
Q ss_pred eEEEEEccCCCCCCccccccCCc
Q psy9003 1177 IITIAEDVSGMPASCRPVTEGGT 1199 (1276)
Q Consensus 1177 vilIAE~~s~~p~~~~p~~~ggl 1199 (1276)
.++++|.+...+....+....+.
T Consensus 228 ~~~~~E~~~~~~~~~~~~~~~~~ 250 (403)
T d1hx0a2 228 PFIFQEVIDLGGEAIKSSEYFGN 250 (403)
T ss_dssp CEEEECCCCCSSSSSCGGGGTTT
T ss_pred ceEEEEEeccCcchhhcccccCC
Confidence 78999988877777666654443
|
| >d1r7aa2 c.1.8.1 (A:1-434) Sucrose phosphorylase {Bifidobacterium adolescentis [TaxId: 1680]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Sucrose phosphorylase species: Bifidobacterium adolescentis [TaxId: 1680]
Probab=99.90 E-value=2.7e-24 Score=235.23 Aligned_cols=194 Identities=11% Similarity=0.020 Sum_probs=135.0
Q ss_pred CceEEEEecCCccccCccCcHHHHHHhhhhHHHHcCCCCCccceeecccccccccccccceeeccCccccccccccccCC
Q psy9003 895 NLKIYESHVGICTQEQKCASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAESH 974 (1276)
Q Consensus 895 d~vIYElHVr~ft~~~~~Gtf~gl~ek~LdyLK~LGVna~d~wV~LmP~f~~eew~~~~pi~~l~~~Pi~E~~i~~~~S~ 974 (1276)
+.|.|.+...++ ..|+|+|++++ ||||++||||+ |||||+|+ . .
T Consensus 3 ~~~~~~~y~d~~----~~Gdl~g~~~~-Ldyl~~LGv~~----I~L~Pi~~--------------------~-------~ 46 (434)
T d1r7aa2 3 NKVQLITYADRL----GDGTIKSMTDI-LRTRFDGVYDG----VHILPFFT--------------------P-------F 46 (434)
T ss_dssp SSCEEEECSSSB----SSSSHHHHHHH-HHHHSTTTCCE----EEECCCEE--------------------C-------S
T ss_pred CceEEEEecCCC----CCCCHHHHHHH-HHHHHHcCCCE----EEECCCCC--------------------C-------C
Confidence 456777666554 24999999996 99999999999 99995553 1 1
Q ss_pred CcccCCCccccccccccccccccCCCCCCcccccccccccCCCCCccccccccccCCCCCCHHHHHHHHHHHHHcCCEEE
Q psy9003 975 DQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLYVL 1054 (1276)
Q Consensus 975 ~~~~WGYdp~nyf~~d~~~y~~~S~~~Dp~~~~dap~~~yas~s~hkYt~D~~~ID~~~Gt~eEfK~LV~alHk~GI~VI 1054 (1276)
...+|||++.||+ +++ |+|||+++||+| .+||+||
T Consensus 47 ~~~d~GY~~~Dy~---------------------~vd-------------------p~~Gt~~d~k~L-----~rGi~VI 81 (434)
T d1r7aa2 47 DGADAGFDPIDHT---------------------KVD-------------------ERLGSWDDVAEL-----SKTHNIM 81 (434)
T ss_dssp SSSSTTSSCSEEE---------------------EEC-------------------TTTCCHHHHHHH-----HTTSEEE
T ss_pred CCCCCCcCccccc---------------------ccC-------------------cccCCHHHHHHH-----HhCCeee
Confidence 2356999999999 444 999999999999 3799999
Q ss_pred EEEeccccCCcccCCCcCCCCCC-C---ccccc----CC---------------CCC----------------CCCCCCc
Q psy9003 1055 LDVVHSHASKNVLDGLNEFDGTQ-A---CFFHD----GP---------------RGT----------------HPLWDSR 1095 (1276)
Q Consensus 1055 LDvV~NHt~~~~~~~~~~f~g~~-~---~Yy~~----~~---------------~g~----------------~~~W~g~ 1095 (1276)
||+|+|||+..++++........ + .+|.. .+ .+. ......+
T Consensus 82 lDvV~NHt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (434)
T d1r7aa2 82 VDAIVNHMSWESKQFQDVLAKGEESEYYPMFLTMSSVFPNGATEEDLAGIYRPRPGLPFTHYKFAGKTRLVWVSFTPQQV 161 (434)
T ss_dssp EEEECSEEETTSHHHHHHHHHGGGSTTGGGBCBHHHHCTTCBCHHHHHTSCCSSSSCSEEEEEETTEEEEEECSSSTTEE
T ss_pred EEecccccccccchhhhhhhccCCCcccccccccCCCCCCccccCCCCcccccCCcccccccccccccceeeeccccccc
Confidence 99999999988755321100000 0 00000 00 000 0011236
Q ss_pred CCCCCcHHHHHHHHHHHHHHHHhCCCcEEccCCccccccccCCCCCCCCCCCccccCCCCCchHHHHHHHHHHHHHhhCC
Q psy9003 1096 LFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYP 1175 (1276)
Q Consensus 1096 ~LN~~np~Vr~~Iidsl~~Wv~eygVDGFRfD~a~~L~~~d~g~g~~~~~~~~~~~~~~~d~~a~~Fl~el~~~Vr~~~P 1175 (1276)
++|+.+|.|++++.+++++|++ +|+||||+|++..+.... +.. .........+++.++..++...+
T Consensus 162 ~ln~~~p~v~~~~~~~~~~w~~-~g~dg~r~d~~~~~~~~~------~~~-------~~~~~~~~~~~~~~~~~~~~~~~ 227 (434)
T d1r7aa2 162 DIDTDSDKGWEYLMSIFDQMAA-SHVSYIRLDAVGYGAKEA------GTS-------CFMTPKTFKLISRLREEGVKRGL 227 (434)
T ss_dssp EBCTTSHHHHHHHHHHHHHHHH-TTCCEEEEETGGGSCCCT------TSC-------SSSCHHHHHHHHHHHHHHHHTTC
T ss_pred hhcccchhhhhhhhhHhhhhhc-cCCccccccccccccccc------ccc-------cccccchhhHHHHHHHHHhcccc
Confidence 8999999999999999999997 699999999999884221 000 01223456778888888877777
Q ss_pred CeEEEEEc
Q psy9003 1176 EIITIAED 1183 (1276)
Q Consensus 1176 dvilIAE~ 1183 (1276)
.....++.
T Consensus 228 ~~~~~~~~ 235 (434)
T d1r7aa2 228 EILIEVHS 235 (434)
T ss_dssp EEEECCCS
T ss_pred cccccccc
Confidence 76666654
|
| >d1iv8a2 c.1.8.1 (A:1-653) Maltooligosyl trehalose synthase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Maltooligosyl trehalose synthase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=99.84 E-value=3.7e-22 Score=241.00 Aligned_cols=83 Identities=19% Similarity=0.264 Sum_probs=70.5
Q ss_pred CcHHHHHHhhhhHHHHcCCCCCccceeecccccccccccccceeeccCccccccccccccCCCcccCCCccccccccccc
Q psy9003 913 ASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAESHDQALVGDKTIAFWLMDKE 992 (1276)
Q Consensus 913 Gtf~gl~ek~LdyLK~LGVna~d~wV~LmP~f~~eew~~~~pi~~l~~~Pi~E~~i~~~~S~~~~~WGYdp~nyf~~d~~ 992 (1276)
|||.+++++ ||||++||||+ |||+|+| +. . +..++||++.||+
T Consensus 14 ftF~~~~~~-LpYL~~LGVs~----IyLsPi~--------------------~a---~----~gS~HGYDv~D~~----- 56 (653)
T d1iv8a2 14 FNFGDVIDN-LWYFKDLGVSH----LYLSPVL--------------------MA---S----PGSNHGYDVIDHS----- 56 (653)
T ss_dssp BCHHHHHHT-HHHHHHHTCCE----EEECCCE--------------------EE---C----TTCSSCCSEEEEE-----
T ss_pred CCHHHHHHh-hHHHHHCCCCE----EEECccC--------------------CC---C----CCCCCCccccCcc-----
Confidence 699999986 99999999999 9999544 21 1 1236899988888
Q ss_pred cccccCCCCCCcccccccccccCCCCCccccccccccCCCCCCHHHHHHHHHHHHHcCCEEEEEEeccccCCccc
Q psy9003 993 MYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVL 1067 (1276)
Q Consensus 993 ~y~~~S~~~Dp~~~~dap~~~yas~s~hkYt~D~~~ID~~~Gt~eEfK~LV~alHk~GI~VILDvV~NHt~~~~~ 1067 (1276)
. |||.||+.++|++||++||++||+||+|+|+||++.++.
T Consensus 57 ----------------~-------------------Vdp~lGt~edf~~LV~aaH~~Gm~VIlDiVpNH~g~d~~ 96 (653)
T d1iv8a2 57 ----------------R-------------------INDELGGEKEYRRLIETAHTIGLGIIQDIVPNHMAVNSL 96 (653)
T ss_dssp ----------------E-------------------ECTTTTHHHHHHHHHHHHHHTTCEEEEEECCSEEECCTT
T ss_pred ----------------c-------------------cchhcCCHHHHHHHHHHHHHCCCEEEEEECCCcccCCcc
Confidence 3 449999999999999999999999999999999987653
|
| >d1m7xa1 b.1.18.2 (A:117-226) 1,4-alpha-glucan branching enzyme, N-terminal domain N {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: E set domains family: E-set domains of sugar-utilizing enzymes domain: 1,4-alpha-glucan branching enzyme, N-terminal domain N species: Escherichia coli [TaxId: 562]
Probab=99.77 E-value=1.6e-19 Score=172.89 Aligned_cols=75 Identities=21% Similarity=0.379 Sum_probs=67.6
Q ss_pred HHHhhccceEec-CC--cEEEEEEccCCceEEEEeecc-CCCcc--e-------EEEEEccCccccceEEEEEecCCC--
Q psy9003 60 TSYNKYGIHVQA-DN--SVRCFEWAPSAQQLYLTGNVS-LTPWS--I-------MEEASLSSIKLIQSIQYILTGVFG-- 124 (1276)
Q Consensus 60 ~~y~~fGah~~~-~g--g~~f~~wAP~A~~v~l~gdfn-~~~w~--m-------~~~~~~~~~~~g~~yky~i~~~~g-- 124 (1276)
+.|+.||||++. +| ||+||+|||+|++|+|+|||| |+.-. | +|+++||+++.|+.|||+|.+.+|
T Consensus 4 ~~y~~lGah~~~~~g~~Gv~FrvwAP~A~~V~l~gdfn~~~~~~~~m~~~~~~G~W~~~i~~~~~G~~Y~y~v~~~~G~~ 83 (110)
T d1m7xa1 4 RPYETLGAHADTMDGVTGTRFSVWAPNARRVSVVGQFNYWDGRRHPMRLRKESGIWELFIPGAHNGQLYKYEMIDANGNL 83 (110)
T ss_dssp CGGGTSEEEEEESSSCEEEEEEEECSSCSCEEEEEGGGTSCTTTCBCCCCTTTTEEEEEEETCCTTCEEEEEEECTTSCE
T ss_pred chHHHcCCEEeecCCcceEEEEEECCCCCEEEEEEECCCCCCceEEeEEecCCCcEEEEecCCCCCCEEEEEEEcCCCcE
Confidence 689999999877 65 899999999999999999995 42222 5 999999999999999999999999
Q ss_pred -------------CCCccccccc
Q psy9003 125 -------------TPEQLKYLVD 134 (1276)
Q Consensus 125 -------------rp~~as~~~d 134 (1276)
||+|||+|+|
T Consensus 84 ~~~~DPYA~~~e~~p~~aSvv~d 106 (110)
T d1m7xa1 84 RLKSDPYAFEAQMRPETASLICG 106 (110)
T ss_dssp EEECCTTCSSEECTTTCEEECCC
T ss_pred eEEcChhhcccccCCCCeEEEec
Confidence 8999999998
|
| >d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: Ankyrin-R species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.69 E-value=1.3e-17 Score=183.99 Aligned_cols=337 Identities=17% Similarity=0.116 Sum_probs=202.0
Q ss_pred cccccCCChHHHHHHHhhhhccCCCCCccccchhhhhhcccccCCCHHHHHHHhhhhhccCCCCcccchhhhhccccccc
Q psy9003 270 HKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAG 349 (1276)
Q Consensus 270 h~~~~~~~ie~~~yli~e~~~~~~~~~~~~~t~~~~~~~~a~~~gsi~~l~~Lv~~~~~~~~~~~~~~~~~~~~~~~~a~ 349 (1276)
|.|...|++|+|++|++- .+++-..+..|.|-+ |.|+..|+.|++++|+++.-.++..+. ...++.+.|+
T Consensus 5 ~~Aa~~g~~~~v~~Ll~~-g~~in~~d~~g~TpL----~~A~~~g~~~iv~~Ll~~gadi~~~~~-----~g~t~L~~A~ 74 (408)
T d1n11a_ 5 HVASFMGHLPIVKNLLQR-GASPNVSNVKVETPL----HMAARAGHTEVAKYLLQNKAKVNAKAK-----DDQTPLHCAA 74 (408)
T ss_dssp HHHHHHTCHHHHHHHHHT-TCCSCCSSSCCCCHH----HHHHHHTCHHHHHHHHHHTCCSSCCCT-----TSCCHHHHHH
T ss_pred HHHHHCcCHHHHHHHHHC-CCCCCCCCCCCCCHH----HHHHHcCCHHHHHHHHHCcCCCCCCCC-----CCCCHHHHHH
Confidence 444445666777777763 355544554555444 667778999999999987543332221 1234556778
Q ss_pred cCCChhhhHHhhhhhccccC----CCCh----------hhHHHHH--------------hhhcccccCCChhHHHHHhhh
Q psy9003 350 LFGTPEQLKYLVDECHKAGL----FGTP----------EQLKYLV--------------DECHKAGLFGTPEQLKYLVDE 401 (1276)
Q Consensus 350 ~~g~ie~~~yLi~~~h~~~~----~~~~----------e~~~~~~--------------~~~~~a~~~~~id~vkyLi~~ 401 (1276)
..|++|++++|++....... .... ....... +....+...++.++|++|++.
T Consensus 75 ~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~ 154 (408)
T d1n11a_ 75 RIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLER 154 (408)
T ss_dssp HHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred HcCCHHHHHHHHHhhhccccccccccchhhhhhhhcccccccccccccccccccccccchHHHHHHHcCCHHHHHHHHHc
Confidence 88999999999887654331 1110 0000000 111122237899999999964
Q ss_pred cccccCCCChhhhhcccccchhccccCCHhHHHhhcccccccccCCChhhHHHHHHHHhHhccCCChhhHHHhh------
Q psy9003 402 CHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLV------ 475 (1276)
Q Consensus 402 ~h~~~~~~~~~~~~~~vt~lh~a~~~~~~~~~~yli~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~~~~~~~v------ 475 (1276)
.+++-..+.++. |+||.|+..|+.+++++|+..+. .+-..+.++... .+........+..+.++
T Consensus 155 -~~~~~~~~~~~~----~~L~~A~~~~~~~~~~~Ll~~g~-~~~~~~~~~~t~----l~~~~~~~~~~~~~~l~~~~~~~ 224 (408)
T d1n11a_ 155 -DAHPNAAGKNGL----TPLHVAVHHNNLDIVKLLLPRGG-SPHSPAWNGYTP----LHIAAKQNQVEVARSLLQYGGSA 224 (408)
T ss_dssp -TCCTTCCCSSCC----CHHHHHHHTTCHHHHHHHGGGTC-CSCCCCTTCCCH----HHHHHHTTCHHHHHHHHHTTCCT
T ss_pred -CCCCCcCCCcCc----hHHHHHHHcCCHHHHHHHHhcCC-cccccCCCCCCc----chhhhccchhhhhhhhhhccccc
Confidence 456656666676 99999999999999999997642 222222222111 12222233344444442
Q ss_pred --------hhhcccccCCChhhhhhhhhhhhhhccCCCHHHHHHHhhhhcccccCCCHHHHHHHHhhhhhcCCCCCcchh
Q psy9003 476 --------DECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQL 547 (1276)
Q Consensus 476 --------~~~~~a~~~~~~e~~~~lv~~~~~~~~~~~~~~~~~~~t~~~~a~~~g~~e~~~~lv~~~~~~~~~~t~~~l 547 (1276)
|..|.|...+..+.++++.......+.... ...|..+.|...++++++++|++.+++.+....
T Consensus 225 ~~~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~-----~g~~~l~~a~~~~~~~i~~~Ll~~g~~~~~~~~---- 295 (408)
T d1n11a_ 225 NAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNK-----SGLTPLHLVAQEGHVPVADVLIKHGVMVDATTR---- 295 (408)
T ss_dssp TCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCT-----TCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCS----
T ss_pred cccCCCCCCHHHHHHHhCcHhHhhhhhccccccccccC-----CCCChhhhhhhcCcHHHHHHHHHCCCccccccc----
Confidence 344555666666666666665555543322 124556677777888888888877777664433
Q ss_pred hhhhhhhhccccCCCHHHHHHHHHhhhhccCCCChhhhhhhhhhhcccccCCCHHHHHHHHhhhhhccCCCChhhhhhhH
Q psy9003 548 KYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLV 627 (1276)
Q Consensus 548 ~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~~~ 627 (1276)
+.-|..+.+...++++-++++.+.++++|....+- .|..+.|...|++|.+++|++.++++|.+-+.- -
T Consensus 296 -~~~t~L~~~~~~~~~~~~~~ll~~g~~in~~d~~G-----~T~Lh~A~~~g~~~iv~~Ll~~GAd~n~~d~~G-----~ 364 (408)
T d1n11a_ 296 -MGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLG-----YSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDG-----T 364 (408)
T ss_dssp -SCCCHHHHHHHSSCSHHHHHHHHTTCCTTCCCTTS-----CCHHHHHHHTTCHHHHHHHHHTTCCSCCCCSSS-----C
T ss_pred -cccccchhhcccCcceeeeeeccccccccccCCCC-----CCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCC-----C
Confidence 22334445556777888888888877777333222 344555557788888888888888877543322 3
Q ss_pred HHhhhccCCCCHHHHHHHH
Q psy9003 628 DECHKAGLFGTPEQLKYLV 646 (1276)
Q Consensus 628 ~~~~~~~~~~~~~~~~~~~ 646 (1276)
++.+-|...|+++.+++|-
T Consensus 365 t~L~~A~~~~~~~iv~~L~ 383 (408)
T d1n11a_ 365 TPLAIAKRLGYISVTDVLK 383 (408)
T ss_dssp CHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHcCCHHHHHHHH
Confidence 3455555567777777763
|
| >d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: Ankyrin-R species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.65 E-value=2.2e-16 Score=174.13 Aligned_cols=261 Identities=16% Similarity=0.112 Sum_probs=134.9
Q ss_pred CChhHHHHHhhhcccccCCCChhhhhcccccchhccccCCHhHHHhhcccccccccCCChhhHHHHHHHHhHhccCCChh
Q psy9003 390 GTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPE 469 (1276)
Q Consensus 390 ~~id~vkyLi~~~h~~~~~~~~~~~~~~vt~lh~a~~~~~~~~~~yli~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~~ 469 (1276)
|+.|+|++|+.. .++.-..+.++. ||||.|+..|+.+++++||....................... +...
T Consensus 44 g~~~iv~~Ll~~-gadi~~~~~~g~----t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~-----~~~~ 113 (408)
T d1n11a_ 44 GHTEVAKYLLQN-KAKVNAKAKDDQ----TPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAARE-----GHVE 113 (408)
T ss_dssp TCHHHHHHHHHH-TCCSSCCCTTSC----CHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHH-----TCHH
T ss_pred CCHHHHHHHHHC-cCCCCCCCCCCC----CHHHHHHHcCCHHHHHHHHHhhhccccccccccchhhhhhhh-----cccc
Confidence 455555555542 234444455566 777777777777777777755443332222222111111000 0000
Q ss_pred hHH--------------HhhhhhcccccCCChhhhhhhhhhhhhhccCCCHHHHHHHhhhhcccccCCCHHHHHHHHhhh
Q psy9003 470 QLK--------------YLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDEC 535 (1276)
Q Consensus 470 ~~~--------------~~v~~~~~a~~~~~~e~~~~lv~~~~~~~~~~~~~~~~~~~t~~~~a~~~g~~e~~~~lv~~~ 535 (1276)
... ...+..+.+...++.+.+++|++.....+.... ...+..+.|+..|+++.+++|+..+
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~-----~~~~~L~~A~~~~~~~~~~~Ll~~g 188 (408)
T d1n11a_ 114 TVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGK-----NGLTPLHVAVHHNNLDIVKLLLPRG 188 (408)
T ss_dssp HHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCS-----SCCCHHHHHHHTTCHHHHHHHGGGT
T ss_pred cccccccccccccccccccchHHHHHHHcCCHHHHHHHHHcCCCCCcCCC-----cCchHHHHHHHcCCHHHHHHHHhcC
Confidence 000 012445556666777777777776666554432 2244556677788888888888877
Q ss_pred hhcCCCCCcchhhhhhhhhhccccCCCHHHHHHHHHhhhhccCCCChhhhhhhhhhhcccccCCCHHHHHHHHhhhhhcc
Q psy9003 536 HKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAG 615 (1276)
Q Consensus 536 ~~~~~~~t~~~l~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~ 615 (1276)
.+.+.-++ ...|..+.+...++.+....|.......+...... .+..+.|...+..+.+++++......+
T Consensus 189 ~~~~~~~~-----~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-----~t~l~~a~~~~~~~~~~~~~~~~~~~~ 258 (408)
T d1n11a_ 189 GSPHSPAW-----NGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQG-----VTPLHLAAQEGHAEMVALLLSKQANGN 258 (408)
T ss_dssp CCSCCCCT-----TCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTC-----CCHHHHHHHTTCHHHHHHHHTTTCCTT
T ss_pred CcccccCC-----CCCCcchhhhccchhhhhhhhhhccccccccCCCC-----CCHHHHHHHhCcHhHhhhhhccccccc
Confidence 76664333 22344455556677777777766655555322222 333444456666777776666555544
Q ss_pred CCCChhhhhhhHHHhhhccCCCCHHHHHHHHHHHHhhcCCCChHHHhhhhhhhhhcccCCChhHHHHHHH
Q psy9003 616 LFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVD 685 (1276)
Q Consensus 616 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 685 (1276)
..-.. ..++.+.|...++++.+++|++.....+.. -++.-+++|.+...++.+.++++++
T Consensus 259 ~~~~~-----g~~~l~~a~~~~~~~i~~~Ll~~g~~~~~~-----~~~~~t~L~~~~~~~~~~~~~~ll~ 318 (408)
T d1n11a_ 259 LGNKS-----GLTPLHLVAQEGHVPVADVLIKHGVMVDAT-----TRMGYTPLHVASHYGNIKLVKFLLQ 318 (408)
T ss_dssp CCCTT-----CCCHHHHHHHHTCHHHHHHHHHHTCCTTCC-----CSSCCCHHHHHHHSSCSHHHHHHHH
T ss_pred cccCC-----CCChhhhhhhcCcHHHHHHHHHCCCccccc-----cccccccchhhcccCcceeeeeecc
Confidence 32111 122233333336667777766533222110 0112235566666666666666665
|
| >d1m7xa1 b.1.18.2 (A:117-226) 1,4-alpha-glucan branching enzyme, N-terminal domain N {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: E set domains family: E-set domains of sugar-utilizing enzymes domain: 1,4-alpha-glucan branching enzyme, N-terminal domain N species: Escherichia coli [TaxId: 562]
Probab=99.63 E-value=1.3e-16 Score=152.61 Aligned_cols=100 Identities=19% Similarity=0.270 Sum_probs=81.5
Q ss_pred hhccccCCCCCcccCeeecCceEEEEEccCCcEEEEEccCCCCcccccccee-cCCCeEEEEcCCCCCCCcccCcccEEE
Q psy9003 761 DECHKAGLFGTPEQLKYLVDECHKAGLLCFMHVVCAAGDFNNWNREEFAYKK-LDFGKWELVLPPNPDGSCKLTHLSQVK 839 (1276)
Q Consensus 761 ~~Y~~~G~~Gtp~G~~y~~D~a~FalwAP~A~~VsLvGDFN~wd~~~~pM~r-~~~GVWsl~Ip~~~~G~~~i~hGs~Yk 839 (1276)
+.|+.||++-+..+ .+++++|++|||+|++|+|+||||+|+...++|.+ .+.|+|+++||+...| ..|+
T Consensus 4 ~~y~~lGah~~~~~---g~~Gv~FrvwAP~A~~V~l~gdfn~~~~~~~~m~~~~~~G~W~~~i~~~~~G-------~~Y~ 73 (110)
T d1m7xa1 4 RPYETLGAHADTMD---GVTGTRFSVWAPNARRVSVVGQFNYWDGRRHPMRLRKESGIWELFIPGAHNG-------QLYK 73 (110)
T ss_dssp CGGGTSEEEEEESS---SCEEEEEEEECSSCSCEEEEEGGGTSCTTTCBCCCCTTTTEEEEEEETCCTT-------CEEE
T ss_pred chHHHcCCEEeecC---CcceEEEEEECCCCCEEEEEEECCCCCCceEEeEEecCCCcEEEEecCCCCC-------CEEE
Confidence 34667776544322 12578999999999999999999999999999975 5689999999987665 6999
Q ss_pred EEEEEeCCeeeeecCCcceEeecCCCC-Cccc
Q psy9003 840 LVVRNQHGHLLDRLSPWATYVTEPPVV-GHAY 870 (1276)
Q Consensus 840 YrV~~~dG~~~~~~DPYAkav~~~~~~-s~v~ 870 (1276)
|+|.+.+|+++.+.||||++.+.+++. |+++
T Consensus 74 y~v~~~~G~~~~~~DPYA~~~e~~p~~aSvv~ 105 (110)
T d1m7xa1 74 YEMIDANGNLRLKSDPYAFEAQMRPETASLIC 105 (110)
T ss_dssp EEEECTTSCEEEECCTTCSSEECTTTCEEECC
T ss_pred EEEEcCCCcEeEEcChhhcccccCCCCeEEEe
Confidence 999988999999999999999887653 4443
|
| >d2fhfa1 b.1.18.2 (A:288-402) Pullulanase PulA {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: E set domains family: E-set domains of sugar-utilizing enzymes domain: Pullulanase PulA species: Klebsiella pneumoniae [TaxId: 573]
Probab=99.35 E-value=4.3e-13 Score=128.67 Aligned_cols=96 Identities=6% Similarity=-0.061 Sum_probs=74.4
Q ss_pred CCCcccCeeecCceEEEEEccCCcEEEEE-ccCCCCccccccc-eecCCCeEEEEcCCCCCCCcccCcccEEEEEEEEeC
Q psy9003 769 FGTPEQLKYLVDECHKAGLLCFMHVVCAA-GDFNNWNREEFAY-KKLDFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQH 846 (1276)
Q Consensus 769 ~Gtp~G~~y~~D~a~FalwAP~A~~VsLv-GDFN~wd~~~~pM-~r~~~GVWsl~Ip~~~~G~~~i~hGs~YkYrV~~~d 846 (1276)
...|.|+++..++++|+||||+|++|.|+ .+.+.+.....+| .+...|+|++.+++..+ |..|+|+|+..+
T Consensus 6 ~~~~lGa~~~~~g~~F~lwAP~A~~V~L~l~~~~~~~~~~~~~~~~~~~GvW~~~i~~~~~-------G~~Y~y~v~~~~ 78 (115)
T d2fhfa1 6 EALSYGAQLTDSGVTFRVWAPTAQQVELVIYSADKKVIASHPMTRDSASGAWSWQGGSDLK-------GAFYRYAMTVYH 78 (115)
T ss_dssp HTSCCEEEEETTEEEEEEECTTCSEEEEEEECTTCCEEEEEECEECTTTCEEEEEECGGGT-------TCEEEEEEEEEE
T ss_pred CccCCCeEEeCCcEEEEEECCCCCEEEEEEECCCCCccceeeeeEcCCCCEEEEEECCCCC-------CCEEEEEEEccc
Confidence 35688999999999999999999999986 3333333334445 44567999999997765 469999998643
Q ss_pred -----CeeeeecCCcceEeecCCCCCcccc
Q psy9003 847 -----GHLLDRLSPWATYVTEPPVVGHAYE 871 (1276)
Q Consensus 847 -----G~~~~~~DPYAkav~~~~~~s~v~~ 871 (1276)
+.....+||||++++.++.+|+++|
T Consensus 79 ~~~~~~~~~~~~DPYA~a~~~~~~~s~vvD 108 (115)
T d2fhfa1 79 PQSRKVEQYEVTDPYAHSLSTNSEYSQVVD 108 (115)
T ss_dssp TTTTEEEEEEECCTTCSCBCGGGSSEECBC
T ss_pred ccccCCcceEecceeeEEEccCCCceEEEe
Confidence 3445789999999999888777665
|
| >d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.32 E-value=4.1e-13 Score=138.88 Aligned_cols=210 Identities=18% Similarity=0.048 Sum_probs=156.9
Q ss_pred CCChhHHHHHhhhcccccCCCChhhhhcccccchhccccCCHhHHHhhcccccccccCCChhhHHHHHHHHhHhccCCCh
Q psy9003 389 FGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTP 468 (1276)
Q Consensus 389 ~~~id~vkyLi~~~h~~~~~~~~~~~~~~vt~lh~a~~~~~~~~~~yli~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~ 468 (1276)
.|++|.|+.|+-....+...+|..|. ||||.|+..|+.|++++|+..........+.
T Consensus 13 ~G~~~~v~~~l~~~~~~~~~~D~~G~----TpLh~Aa~~g~~e~~~~l~~~~~~~~~~~~~------------------- 69 (223)
T d1uoha_ 13 SGKLEELKESILADKSLATRTDQDSR----TALHWACSAGHTEIVEFLLQLGVPVNDKDDA------------------- 69 (223)
T ss_dssp TTCHHHHHHHHHHCGGGGGCCCTTSC----CHHHHHHHHTCHHHHHHHHHHTCCSCCCCTT-------------------
T ss_pred hCCHHHHHHHHHhCCCcCcCcCCCCC----CHHHHHHHhhhhccccccccccccccccccc-------------------
Confidence 68999999998777777788898999 9999999999999999988654322222111
Q ss_pred hhHHHhhhhhcccccCCChhhhhhhhhhhhhhccCCCHHHHHHHhhhhcccccCCCHHHHHHHHhhhhhcCCCCCcchhh
Q psy9003 469 EQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLK 548 (1276)
Q Consensus 469 ~~~~~~v~~~~~a~~~~~~e~~~~lv~~~~~~~~~~~~~~~~~~~t~~~~a~~~g~~e~~~~lv~~~~~~~~~~t~~~l~ 548 (1276)
-.+..+.+...++.|.+++|++...+++.... ...|+.+.|+..|+.|.+++|++.+.+++..+.
T Consensus 70 -----~~~~~~~~~~~~~~~i~~~Ll~~~~d~~~~d~-----~g~tpL~~A~~~~~~e~~~~Ll~~g~d~~~~~~----- 134 (223)
T d1uoha_ 70 -----GWSPLHIAASAGRDEIVKALLGKGAQVNAVNQ-----NGCTPLHYAASKNRHEIAVMLLEGGANPDAKDH----- 134 (223)
T ss_dssp -----CCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCT-----TCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCT-----
T ss_pred -----ccccccccccccccchhHHHhccCceeEeeCC-----CCCchhhHHHHcCCHHHHHHHHHCCCCCCCcCC-----
Confidence 13444555666777788888877766665443 346788889999999999999998888875555
Q ss_pred hhhhhhhccccCCCHHHHHHHHHhhhhccCCCChhhhhhhhhhhcccccCCCHHHHHHHHhhhhhccCCCChhhhhhhHH
Q psy9003 549 YLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVD 628 (1276)
Q Consensus 549 ~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~ 628 (1276)
+.-|..+.+...|..+-+++|.+.+.++|....+ ..|..+-|..+|+.|.+++|++.++++|.+-..- .+
T Consensus 135 ~~~t~L~~a~~~~~~~~~~~L~~~~~~i~~~d~~-----g~TpL~~Aa~~g~~~~v~~LL~~Gad~~~~d~~g-----~t 204 (223)
T d1uoha_ 135 YEATAMHRAAAKGNLKMIHILLYYKASTNIQDTE-----GNTPLHLACDEERVEEAKLLVSQGASIYIENKEE-----KT 204 (223)
T ss_dssp TSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTT-----CCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTS-----CC
T ss_pred CCCccchhhhhcCCcchhhhhccccceeeeccCC-----CCceeccccccCcHHHHHHHHHCCCCCCCCCCCC-----CC
Confidence 4445556677889999999999999888844332 2566666668999999999999999988754433 45
Q ss_pred HhhhccCCCCHHHHHHHHH
Q psy9003 629 ECHKAGLFGTPEQLKYLVD 647 (1276)
Q Consensus 629 ~~~~~~~~~~~~~~~~~~~ 647 (1276)
+++-| .-|+.+.+|.|++
T Consensus 205 pl~~A-~~~~~~i~~~Ll~ 222 (223)
T d1uoha_ 205 PLQVA-KGGLGLILKRMVE 222 (223)
T ss_dssp HHHHC-CTTHHHHHHHHHC
T ss_pred HHHHH-HCCCHHHHhcccC
Confidence 56655 3488888888864
|
| >d2bhua1 b.1.18.2 (A:14-110) Glycosyltrehalose trehalohydrolase, N-terminal domain N {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: E set domains family: E-set domains of sugar-utilizing enzymes domain: Glycosyltrehalose trehalohydrolase, N-terminal domain N species: Deinococcus radiodurans [TaxId: 1299]
Probab=99.31 E-value=5.3e-13 Score=124.88 Aligned_cols=75 Identities=17% Similarity=0.219 Sum_probs=62.2
Q ss_pred HhhHHHhhccceEec-CCcEEEEEEccCCceEEEEeeccCCCcce------EEEEEccCccccceEEEEEecC-----CC
Q psy9003 57 KFTTSYNKYGIHVQA-DNSVRCFEWAPSAQQLYLTGNVSLTPWSI------MEEASLSSIKLIQSIQYILTGV-----FG 124 (1276)
Q Consensus 57 ~Fs~~y~~fGah~~~-~gg~~f~~wAP~A~~v~l~gdfn~~~w~m------~~~~~~~~~~~g~~yky~i~~~-----~g 124 (1276)
+.-+-|..+|||.+. +.||+||+|||+|++|.|+|++ +.|.| +|++++| ++.|+.|||+|.+. -.
T Consensus 4 t~~dp~~~lGa~~~~~~~g~~FrvwAP~A~~V~l~~~~--~~~~m~~~~~G~w~~~~~-~~~G~~Y~y~vdg~~~~DPya 80 (97)
T d2bhua1 4 TQHDPRTRLGATPLPGGAGTRFRLWTSTARTVAVRVNG--TEHVMTSLGGGIYELELP-VGPGARYLFVLDGVPTPDPYA 80 (97)
T ss_dssp CSCCGGGCSEEEECGGGCCEEEEEECSSCSSEEEEETT--EEEECEEEETTEEEEEES-CCTTCEEEEEETTEEECCTTC
T ss_pred cccCCccccCCeEeCCCCeEEEEEECCCCCEeEEEeeC--CccCCEEccCEEEEEEcC-CCCCCEEEEEECCeEccCCch
Confidence 344678899999877 4589999999999999999999 66678 9999996 89999999999431 00
Q ss_pred -----CCCccccccc
Q psy9003 125 -----TPEQLKYLVD 134 (1276)
Q Consensus 125 -----rp~~as~~~d 134 (1276)
.|+.+|+|+|
T Consensus 81 r~~~~~v~g~S~vvD 95 (97)
T d2bhua1 81 RFLPDGVHGEAEVVD 95 (97)
T ss_dssp SCCTTCTTSCEECCC
T ss_pred hcCCCCCCCCeEEeC
Confidence 5788999987
|
| >d1eh9a1 b.1.18.2 (A:1-90) Glycosyltrehalose trehalohydrolase, N-terminal domain N {Archaeon Sulfolobus solfataricus, km1 [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: E set domains family: E-set domains of sugar-utilizing enzymes domain: Glycosyltrehalose trehalohydrolase, N-terminal domain N species: Archaeon Sulfolobus solfataricus, km1 [TaxId: 2287]
Probab=99.26 E-value=3.8e-13 Score=124.13 Aligned_cols=67 Identities=13% Similarity=0.233 Sum_probs=57.3
Q ss_pred ccceEecCCcEEEEEEccCCceEEEEeeccCCCcc-e------EEEEEccCccccceEEEEEecCCC-----------CC
Q psy9003 65 YGIHVQADNSVRCFEWAPSAQQLYLTGNVSLTPWS-I------MEEASLSSIKLIQSIQYILTGVFG-----------TP 126 (1276)
Q Consensus 65 fGah~~~~gg~~f~~wAP~A~~v~l~gdfn~~~w~-m------~~~~~~~~~~~g~~yky~i~~~~g-----------rp 126 (1276)
|||++..+| ++||+|||+|++|.|+|++ ..|. | +|++++|+++.|+.|||+|.+... .|
T Consensus 2 ~Ga~~~~~g-v~FrvwAP~A~~V~l~~~~--~~~~~m~~~~~G~W~~~v~~~~~G~~Y~y~v~~~~~~~DP~s~~~~~~~ 78 (90)
T d1eh9a1 2 FAYKIDGNE-VIFTLWAPYQKSVKLKVLE--KGLYEMERDEKGYFTITLNNVKVRDRYKYVLDDASEIPDPASRYQPEGV 78 (90)
T ss_dssp CSCCBSSSC-EECCEECTTCSCCBCCCSS--SCCCCCCCCTTSEECCEESSCCSCCEECEECTTSCEECCTTCSCCTTCS
T ss_pred cceEEeCCC-EEEEEECCCCCEEEEEeec--CCcccceeCCCCEEEEEeCCCCCCceeEEEEeCCcCcCCccHhcCCCCC
Confidence 899987665 9999999999999999987 4444 6 999999999999999999954221 78
Q ss_pred Cccccccc
Q psy9003 127 EQLKYLVD 134 (1276)
Q Consensus 127 ~~as~~~d 134 (1276)
+.+|+|+|
T Consensus 79 ~g~S~Vvd 86 (90)
T d1eh9a1 79 HGPSQIIQ 86 (90)
T ss_dssp SSCEECCC
T ss_pred CCceEEeC
Confidence 88999988
|
| >d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.26 E-value=2.6e-12 Score=132.76 Aligned_cols=217 Identities=17% Similarity=-0.023 Sum_probs=143.3
Q ss_pred hhhcccccCCCHHHHHHHhhhhhccCCCCcccchhhhhccccccccCCChhhhHHhhhhhccccC-CCChhhHHHHHhhh
Q psy9003 305 DECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGL-FGTPEQLKYLVDEC 383 (1276)
Q Consensus 305 ~~~~~a~~~gsi~~l~~Lv~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~ie~~~yLi~~~h~~~~-~~~~e~~~~~~~~~ 383 (1276)
+..+.++..|++|.|+.|+..... .++.+|.-. -|+.|.|+..|+.|+++||++..-.... ..........
T Consensus 5 ~~~~~~a~~G~~~~v~~~l~~~~~-~~~~~D~~G---~TpLh~Aa~~g~~e~~~~l~~~~~~~~~~~~~~~~~~~~---- 76 (223)
T d1uoha_ 5 LMVCNLAYSGKLEELKESILADKS-LATRTDQDS---RTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHI---- 76 (223)
T ss_dssp SHHHHHHHTTCHHHHHHHHHHCGG-GGGCCCTTS---CCHHHHHHHHTCHHHHHHHHHHTCCSCCCCTTCCCHHHH----
T ss_pred HHHHHHHHhCCHHHHHHHHHhCCC-cCcCcCCCC---CCHHHHHHHhhhhcccccccccccccccccccccccccc----
Confidence 345667788999999888765432 244444322 3667888889999999999887654442 1111111111
Q ss_pred cccccCCChhHHHHHhhhcccccCCCChhhhhcccccchhccccCCHhHHHhhcccccccccCCChhhHHHHHHHHhHhc
Q psy9003 384 HKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAG 463 (1276)
Q Consensus 384 ~~a~~~~~id~vkyLi~~~h~~~~~~~~~~~~~~vt~lh~a~~~~~~~~~~yli~~~~~~~~~~~~e~l~~l~~~~~~~~ 463 (1276)
+...|+.|++++|+... +++...+.++. ||||.|+..|+.+++++|+..+ +++-..+
T Consensus 77 --~~~~~~~~i~~~Ll~~~-~d~~~~d~~g~----tpL~~A~~~~~~e~~~~Ll~~g-~d~~~~~--------------- 133 (223)
T d1uoha_ 77 --AASAGRDEIVKALLGKG-AQVNAVNQNGC----TPLHYAASKNRHEIAVMLLEGG-ANPDAKD--------------- 133 (223)
T ss_dssp --HHHHTCHHHHHHHHHTT-CCTTCCCTTCC----CHHHHHHHHTCHHHHHHHHHTT-CCTTCCC---------------
T ss_pred --cccccccchhHHHhccC-ceeEeeCCCCC----chhhHHHHcCCHHHHHHHHHCC-CCCCCcC---------------
Confidence 12247999999999755 56667777888 9999999999999999998643 2221111
Q ss_pred cCCChhhHHHhhhhhcccccCCChhhhhhhhhhhhhhccCCCHHHHHHHhhhhcccccCCCHHHHHHHHhhhhhcCCCCC
Q psy9003 464 LFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGT 543 (1276)
Q Consensus 464 ~~~~~~~~~~~v~~~~~a~~~~~~e~~~~lv~~~~~~~~~~~~~~~~~~~t~~~~a~~~g~~e~~~~lv~~~~~~~~~~t 543 (1276)
... -|..|.+...+..+.+++|.....++|.+.. ...|+.+.|...|+.|++++|++.+++++.-+.
T Consensus 134 ---~~~-----~t~L~~a~~~~~~~~~~~L~~~~~~i~~~d~-----~g~TpL~~Aa~~g~~~~v~~LL~~Gad~~~~d~ 200 (223)
T d1uoha_ 134 ---HYE-----ATAMHRAAAKGNLKMIHILLYYKASTNIQDT-----EGNTPLHLACDEERVEEAKLLVSQGASIYIENK 200 (223)
T ss_dssp ---TTS-----CCHHHHHHHTTCHHHHHHHHHTTCCSCCCCT-----TCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCT
T ss_pred ---CCC-----CccchhhhhcCCcchhhhhccccceeeeccC-----CCCceeccccccCcHHHHHHHHHCCCCCCCCCC
Confidence 111 2445666666777777777777777776554 456777888888888888888887777775444
Q ss_pred cchhhhhhhhhhccccCCCHHHHHHHHH
Q psy9003 544 PEQLKYLVDECHKAGLFGTPEQLKYLVD 571 (1276)
Q Consensus 544 ~~~l~~~~~~~~~~~~~~~~e~~~~l~~ 571 (1276)
+.-|..+-| ..|..+.+|+|++
T Consensus 201 -----~g~tpl~~A-~~~~~~i~~~Ll~ 222 (223)
T d1uoha_ 201 -----EEKTPLQVA-KGGLGLILKRMVE 222 (223)
T ss_dssp -----TSCCHHHHC-CTTHHHHHHHHHC
T ss_pred -----CCCCHHHHH-HCCCHHHHhcccC
Confidence 444445555 4577777777764
|
| >d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: RNase L, 2-5a-dependent ribonuclease species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.26 E-value=5e-12 Score=132.29 Aligned_cols=263 Identities=13% Similarity=-0.046 Sum_probs=157.8
Q ss_pred ccccCCChHHHHHHHhhhhccCCCCCccccchhhhhhcccccCCCHHHHHHHhhhhhccCCCCcccchhhhhcccccccc
Q psy9003 271 KAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGL 350 (1276)
Q Consensus 271 ~~~~~~~ie~~~yli~e~~~~~~~~~~~~~t~~~~~~~~a~~~gsi~~l~~Lv~~~~~~~~~~~~~~~~~~~~~~~~a~~ 350 (1276)
+|-..+++|+||+|++.. +++...+ ...+.|+++-|+..|+.|++++|++..-....... ...++...++.
T Consensus 11 ~Ai~~~~~e~vk~Ll~~G-~din~~~---~~~g~tpL~~A~~~~~~eiv~~L~~~~~~~~~~~~-----~~~~~~~~~~~ 81 (285)
T d1wdya_ 11 KAVQNEDVDLVQQLLEGG-ANVNFQE---EEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKK-----NGATPFLLAAI 81 (285)
T ss_dssp HHHHTTCHHHHHHHHHTT-CCTTCCC---TTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT-----TCCCHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHCC-CCcCccC---CCCCCCHHHHHHHcCCHHHhhhhcccccccccccc-----ccchhhHHHhh
Confidence 333346677777777642 4442222 23456677888889999999999987553332211 12234456667
Q ss_pred CCChhhhHHhhhhhcccc-CCCChhhHHHHHhhhcccccCCChhHHHHHhhhcccccC---------CCChhhhhccccc
Q psy9003 351 FGTPEQLKYLVDECHKAG-LFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGL---------FGTPEQLKYLVDE 420 (1276)
Q Consensus 351 ~g~ie~~~yLi~~~h~~~-~~~~~e~~~~~~~~~~~a~~~~~id~vkyLi~~~h~~~~---------~~~~~~~~~~vt~ 420 (1276)
.+.++..++++.-..... .+......... +...|+.+.++.++........ ....++. ||
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~------a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~----t~ 151 (285)
T d1wdya_ 82 AGSVKLLKLFLSKGADVNECDFYGFTAFME------AAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGA----TA 151 (285)
T ss_dssp HTCHHHHHHHHHTTCCTTCBCTTCCBHHHH------HHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCC----CH
T ss_pred cCCccccchhhhhcccccccccCCCchhHH------HHHhcchhhhhhhhhhcccccccccchhhhhhhcccCc----hH
Confidence 788888888876543222 22222211111 2225788888888765443321 1122234 99
Q ss_pred chhccccCCHhHHHhhcccccccccCCChhhHHHHHHHHhHhccCCChhhHHHhhhhhcccccCCChhhhhhhhhhhhhh
Q psy9003 421 CHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKA 500 (1276)
Q Consensus 421 lh~a~~~~~~~~~~yli~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~~~~~~~v~~~~~a~~~~~~e~~~~lv~~~~~~ 500 (1276)
||.|+++|+.+++++||++........+.... +.. ......+...+..+.+++|++...++
T Consensus 152 L~~A~~~~~~~~~~~Ll~~~~~~i~~~~~~~~--------------~~~-----~~~~~~~~~~~~~~i~~~Li~~ga~~ 212 (285)
T d1wdya_ 152 LMDAAEKGHVEVLKILLDEMGADVNACDNMGR--------------NAL-----IHALLSSDDSDVEAITHLLLDHGADV 212 (285)
T ss_dssp HHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSC--------------CHH-----HHHHHCSCTTTHHHHHHHHHHTTCCS
T ss_pred HHHHHHcCCHHHHHHHHhccCCCcccccCCCC--------------ccc-----ccccccccchHHHHHHHHHHHCCCCC
Confidence 99999999999999999875444333322110 000 11112223333445677777777777
Q ss_pred ccCCCHHHHHHHhhhhcccccCCCHHHHHHHHhh-hhhcCCCCCcchhhhhhhhhhccccCCCHHHHHHHHHhhhhccCC
Q psy9003 501 GLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDE-CHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLF 579 (1276)
Q Consensus 501 ~~~~~~~~~~~~~t~~~~a~~~g~~e~~~~lv~~-~~~~~~~~t~~~l~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~ 579 (1276)
|.+.. ...|+.+.|+..|++|.+++|++. +.++|..+. +.-|..+.|...|+.|.+++|++.||++|..
T Consensus 213 n~~~~-----~g~t~L~~a~~~~~~~~v~~lL~~~g~din~~d~-----~G~TpL~~A~~~~~~eiv~~Ll~~GAd~n~~ 282 (285)
T d1wdya_ 213 NVRGE-----RGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDS-----DGKTALLLAVELKLKKIAELLCKRGASTDCG 282 (285)
T ss_dssp SCCCT-----TSCCHHHHHHHTTCHHHHHHHHHSSSCCTTCCCT-----TSCCHHHHHHHTTCHHHHHHHHHHSSCSCCS
T ss_pred CccCC-----CCCCccchhhhcCcHHHHHHHHHcCCCCCcCCCC-----CCCCHHHHHHHcCCHHHHHHHHHCCCCCCcc
Confidence 76543 345777778888888888888874 556664444 3344555566788888888888888888754
Q ss_pred CC
Q psy9003 580 GT 581 (1276)
Q Consensus 580 ~~ 581 (1276)
.+
T Consensus 283 d~ 284 (285)
T d1wdya_ 283 DL 284 (285)
T ss_dssp SC
T ss_pred cC
Confidence 43
|
| >d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: Transcription factor inhibitor I-kappa-B-beta, IKBB species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.22 E-value=3.8e-12 Score=131.89 Aligned_cols=199 Identities=12% Similarity=-0.087 Sum_probs=110.2
Q ss_pred hhhhcccccCCCHHHHHHHhhhhhccCCCCcccchhhhhccccccccCCChhhhHHhhhhhccccCCCChhhHHHHHhhh
Q psy9003 304 VDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDEC 383 (1276)
Q Consensus 304 ~~~~~~a~~~gsi~~l~~Lv~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~ie~~~yLi~~~h~~~~~~~~e~~~~~~~~~ 383 (1276)
.|+++.|+..|+.|++++|++..-.++..+. ...++.+.|+..|+.+++++|++.............+.......
T Consensus 46 ~TpL~~A~~~g~~~iv~~Ll~~ga~i~~~d~-----~g~tpL~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~ 120 (255)
T d1oy3d_ 46 QTALHLAAILGEASTVEKLYAAGAGVLVAER-----GGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCT 120 (255)
T ss_dssp CCHHHHHHHHTCHHHHHHHHHTTCCSSCCCT-----TSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC------------
T ss_pred CCccchHHhhccccccccccccccccccccc-----ccchhhhhhhccCchHHHHHHHhhccchhcccchhhhhHHhhhc
Confidence 3455667778999999999987543332221 12355677888999999999988765433222221111111000
Q ss_pred c-----cccc---CCChhHHHHHhhhcccccCCCChhhhhcccccchhccccCCHhHHHhhcccccccccCCChhhHHHH
Q psy9003 384 H-----KAGL---FGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYL 455 (1276)
Q Consensus 384 ~-----~a~~---~~~id~vkyLi~~~h~~~~~~~~~~~~~~vt~lh~a~~~~~~~~~~yli~~~~~~~~~~~~e~l~~l 455 (1276)
. .... .........+....-.+....+.++. ||||.|+..++.++|++||..+.-.....+...
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~g~----TpLh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g---- 192 (255)
T d1oy3d_ 121 PDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGH----TPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCG---- 192 (255)
T ss_dssp -----------------------CCCGGGGTTCCCTTSC----CHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTC----
T ss_pred ccchHHHHHHHhhcchhHHHHHHhhhcCcccccccccCc----ccccccccccccccccchhcccccccccccccc----
Confidence 0 0000 11111122222222222234566677 999999999999999999875432221111111
Q ss_pred HHHHhHhccCCChhhHHHhhhhhcccccCCChhhhhhhhhhhhhhccCCCHHHHHHHhhhhcccccCCCHHHHHHHHhhh
Q psy9003 456 VDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDEC 535 (1276)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~v~~~~~a~~~~~~e~~~~lv~~~~~~~~~~~~~~~~~~~t~~~~a~~~g~~e~~~~lv~~~ 535 (1276)
.|..|.|...|..|.+++|++.+.++|.+.. ...|+.+.|+..|+.+++++|++-+
T Consensus 193 -------------------~TpL~~A~~~~~~~~v~~Ll~~gadin~~d~-----~g~t~L~~A~~~~~~~i~~~Ll~~G 248 (255)
T d1oy3d_ 193 -------------------RTPLHLAVEAQAASVLELLLKAGADPTARMY-----GGRTPLGSALLRPNPILARLLRAHG 248 (255)
T ss_dssp -------------------CCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT-----TSCCHHHHHHTSSCHHHHHHHHHTT
T ss_pred -------------------cccccccccccHHHHHHHHHHCCCCCCCCCC-----CCCCHHHHHHHCCCHHHHHHHHHcC
Confidence 2456666666777777777776666665443 3356777777777777777777766
Q ss_pred hhcC
Q psy9003 536 HKAG 539 (1276)
Q Consensus 536 ~~~~ 539 (1276)
+..+
T Consensus 249 a~~~ 252 (255)
T d1oy3d_ 249 APEP 252 (255)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 6533
|
| >d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: Transcription factor inhibitor I-kappa-B-beta, IKBB species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.20 E-value=2.3e-11 Score=125.86 Aligned_cols=197 Identities=13% Similarity=-0.089 Sum_probs=117.9
Q ss_pred CCChhHHHHHhhhcccccCCCChhhhhcccccchhccccCCHhHHHhhcccccccccCCChhhHHHHHHHHhHhccCCCh
Q psy9003 389 FGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTP 468 (1276)
Q Consensus 389 ~~~id~vkyLi~~~h~~~~~~~~~~~~~~vt~lh~a~~~~~~~~~~yli~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~ 468 (1276)
.|+.|+|++|++. .+++-..+.++. ||||.|+..++.+++++|+..........+...+..........
T Consensus 55 ~g~~~iv~~Ll~~-ga~i~~~d~~g~----tpL~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~------ 123 (255)
T d1oy3d_ 55 LGEASTVEKLYAA-GAGVLVAERGGH----TALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDT------ 123 (255)
T ss_dssp HTCHHHHHHHHHT-TCCSSCCCTTSC----CHHHHHTTTTCHHHHHHHSSSCCSSCCCC---------------------
T ss_pred hcccccccccccc-cccccccccccc----hhhhhhhccCchHHHHHHHhhccchhcccchhhhhHHhhhcccc------
Confidence 4678888888854 466666677788 99999999999999999998876655444432211111111100
Q ss_pred hhHHHhhhhhcccccCCChhhhhhhhhhhhhhccCCCHHHHHHHhhhhcccccCCCHHHHHHHHhhhhhcCCCCCcchhh
Q psy9003 469 EQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLK 548 (1276)
Q Consensus 469 ~~~~~~v~~~~~a~~~~~~e~~~~lv~~~~~~~~~~~~~~~~~~~t~~~~a~~~g~~e~~~~lv~~~~~~~~~~t~~~l~ 548 (1276)
.....++.... ....+....+......++.+.. ...|+.+.|+..|++|++++|++....++.... .
T Consensus 124 ~~~~~~~~~~~----~~~~~~~~~~~~~~~~in~~d~-----~g~TpLh~A~~~~~~~~v~~Ll~~~~~~~~~~~----~ 190 (255)
T d1oy3d_ 124 SHAPAAVDSQP----NPENEEEPRDEDWRLQLEAENY-----DGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEP----T 190 (255)
T ss_dssp ------------------------CCCGGGGTTCCCT-----TSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCT----T
T ss_pred hHHHHHHHhhc----chhHHHHHHhhhcCcccccccc-----cCcccccccccccccccccchhccccccccccc----c
Confidence 00000010000 0111111222222333333222 236888999999999999999998887774322 1
Q ss_pred hhhhhhhccccCCCHHHHHHHHHhhhhccCCCChhhhhhhhhhhcccccCCCHHHHHHHHhhhhhc
Q psy9003 549 YLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKA 614 (1276)
Q Consensus 549 ~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~ 614 (1276)
+.-|..+.|+..|+.|.+++|++.++++|....+ .-|..+-|...|+.+.+++|++.||..
T Consensus 191 ~g~TpL~~A~~~~~~~~v~~Ll~~gadin~~d~~-----g~t~L~~A~~~~~~~i~~~Ll~~Ga~~ 251 (255)
T d1oy3d_ 191 CGRTPLHLAVEAQAASVLELLLKAGADPTARMYG-----GRTPLGSALLRPNPILARLLRAHGAPE 251 (255)
T ss_dssp TCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT-----SCCHHHHHHTSSCHHHHHHHHHTTCCC
T ss_pred cccccccccccccHHHHHHHHHHCCCCCCCCCCC-----CCCHHHHHHHCCCHHHHHHHHHcCCCC
Confidence 3345566777999999999999998888822211 134555566999999999999999863
|
| >d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.16 E-value=2.2e-11 Score=124.08 Aligned_cols=219 Identities=15% Similarity=0.008 Sum_probs=129.9
Q ss_pred cccccCCChHHHHHHHhhhhccCCCCCccccchhhhhhcccccCCCHHHHHHHhhhhhccCCCCcccchhhhhccccccc
Q psy9003 270 HKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAG 349 (1276)
Q Consensus 270 h~~~~~~~ie~~~yli~e~~~~~~~~~~~~~t~~~~~~~~a~~~gsi~~l~~Lv~~~~~~~~~~~~~~~~~~~~~~~~a~ 349 (1276)
|.|.+.|++++|++|++.-..+....+..|. |++|-|+..|+.|++++|++.....+ ..+..-+...+..+.+.
T Consensus 5 h~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~----TpL~~A~~~g~~~iv~~Ll~~ga~~~--~~~~~~~~~~~~~~~~~ 78 (229)
T d1ixva_ 5 HQACMENEFFKVQELLHSKPSLLLQKDQDGR----IPLHWSVSFQAHEITSFLLSKMENVN--LDDYPDDSGWTPFHIAC 78 (229)
T ss_dssp HHHHHHTCHHHHHHHHHHCGGGTTCCCTTSC----CHHHHHHHTTCHHHHHHHHTTCTTCC--GGGCCCTTSCCHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHcCCCcccccCCCCC----CHHHHHHHcCCccccchhhhhhcccc--ccccccccccccccccc
Confidence 5555667777777777654333333344444 44566777899999999998644332 11112223445666777
Q ss_pred cCCChhhhHHhhhhhcccc---CCCChhhHHHHHhhhcccccCCChhHHHHHhhhcccccCCCChhhhhcccccchhccc
Q psy9003 350 LFGTPEQLKYLVDECHKAG---LFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGL 426 (1276)
Q Consensus 350 ~~g~ie~~~yLi~~~h~~~---~~~~~e~~~~~~~~~~~a~~~~~id~vkyLi~~~h~~~~~~~~~~~~~~vt~lh~a~~ 426 (1276)
..+++++++++....-... .+......... +...+++|++++|+.... ++...+.++. |+||.|+.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~------~~~~~~~~~~~~l~~~~~-~~~~~~~~g~----t~l~~a~~ 147 (229)
T d1ixva_ 79 SVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHL------AVGKKWFEVSQFLIENGA-SVRIKDKFNQ----IPLHRAAS 147 (229)
T ss_dssp HHTCHHHHHHHHSSSSCCCTTCCCTTSCCHHHH------HHHTTCHHHHHHHHHTTC-CSCCCCTTSC----CHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccc------ccccchhhhhhhhhhhcc-cccccCCCCC----Cccchhhh
Confidence 7888899888765543222 11111111111 122578999999987544 3444566677 99999999
Q ss_pred cCCHhHHHhhcccccccccCCChhhHHHHHHHHhHhccCCChhhHHHhhhhhcccccCCChhhhhhhhhh-hhhhccCCC
Q psy9003 427 FGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDE-CHKAGLFGT 505 (1276)
Q Consensus 427 ~~~~~~~~yli~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~~~~~~~v~~~~~a~~~~~~e~~~~lv~~-~~~~~~~~~ 505 (1276)
.|+.+++++|+..+....-..+.++ .|..|.|..+|..|.+++|++. +.+++.+..
T Consensus 148 ~~~~~~~~~Ll~~~~~~in~~d~~g-----------------------~TpLh~A~~~~~~~~v~~Ll~~~gad~~~~d~ 204 (229)
T d1ixva_ 148 VGSLKLIELLCGLGKSAVNWQDKQG-----------------------WTPLFHALAEGHGDAAVLLVEKYGAEYDLVDN 204 (229)
T ss_dssp HTCHHHHHHHHTTTCCCSCCCCTTS-----------------------CCHHHHHHHTTCHHHHHHHHHHHCCCSCCCCT
T ss_pred ccccccccccccccccccccccccc-----------------------CCchhhhcccccHHHHHHHHHhcCCCCCCcCC
Confidence 9999999998876544333333222 3555666666666666666653 455655543
Q ss_pred HHHHHHHhhhhcccccCCCHHHHHHHHhhhh
Q psy9003 506 PEQLKYLVDECHKAGLFGTPEQLKYLVDECH 536 (1276)
Q Consensus 506 ~~~~~~~~t~~~~a~~~g~~e~~~~lv~~~~ 536 (1276)
...|+.+.|.. -+++++|++.+.
T Consensus 205 -----~g~t~l~~A~~---~~~~~~Ll~~g~ 227 (229)
T d1ixva_ 205 -----KGAKAEDVALN---EQVKKFFLNNVV 227 (229)
T ss_dssp -----TSCCTGGGCSC---HHHHHHHHHHCC
T ss_pred -----CCCCHHHHHhh---HHHHHHHHHcCC
Confidence 33455555552 356666666554
|
| >d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: RNase L, 2-5a-dependent ribonuclease species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.14 E-value=3.1e-11 Score=126.15 Aligned_cols=245 Identities=13% Similarity=0.039 Sum_probs=132.9
Q ss_pred hcccccCCChhHHHHHhhhcccccCCCChhhhhcccccchhccccCCHhHHHhhcccccccccCCChhhHHHHHHHHhHh
Q psy9003 383 CHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKA 462 (1276)
Q Consensus 383 ~~~a~~~~~id~vkyLi~~~h~~~~~~~~~~~~~~vt~lh~a~~~~~~~~~~yli~~~~~~~~~~~~e~l~~l~~~~~~~ 462 (1276)
.++|+..|++|+|++|++..--.++.++..+. ||||.|+..|+.+++++|+............... .....+
T Consensus 9 L~~Ai~~~~~e~vk~Ll~~G~din~~~~~~g~----tpL~~A~~~~~~eiv~~L~~~~~~~~~~~~~~~~-~~~~~~--- 80 (285)
T d1wdya_ 9 LIKAVQNEDVDLVQQLLEGGANVNFQEEEGGW----TPLHNAVQMSREDIVELLLRHGADPVLRKKNGAT-PFLLAA--- 80 (285)
T ss_dssp HHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCC----CHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCC-HHHHHH---
T ss_pred HHHHHHcCCHHHHHHHHHCCCCcCccCCCCCC----CHHHHHHHcCCHHHhhhhccccccccccccccch-hhHHHh---
Confidence 34455578999999998765323355555677 9999999999999999998766554333322111 111111
Q ss_pred ccCCChhhHHHh--------------hhhhcccccCCChhhhhhhhhhhhhhccCCCH-HHHHH----HhhhhcccccCC
Q psy9003 463 GLFGTPEQLKYL--------------VDECHKAGLFGTPEQLKYLVDECHKAGLFGTP-EQLKY----LVDECHKAGLFG 523 (1276)
Q Consensus 463 ~~~~~~~~~~~~--------------v~~~~~a~~~~~~e~~~~lv~~~~~~~~~~~~-~~~~~----~~t~~~~a~~~g 523 (1276)
..+..+..+.. .+..+.+..++..+.+..++.....++..... +.... .-|+.+.|+..|
T Consensus 81 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~ 159 (285)
T d1wdya_ 81 -IAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKG 159 (285)
T ss_dssp -HHTCHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHT
T ss_pred -hcCCccccchhhhhcccccccccCCCchhHHHHHhcchhhhhhhhhhcccccccccchhhhhhhcccCchHHHHHHHcC
Confidence 11122222222 14445555566666666665555554443321 11111 155667777888
Q ss_pred CHHHHHHHHhh-hhhcCCCCCcchhhhhhhhh-hccccCCCHHHHHHHHHhhhhccCCCChhhhhhhhhhhcccccCCCH
Q psy9003 524 TPEQLKYLVDE-CHKAGLFGTPEQLKYLVDEC-HKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTP 601 (1276)
Q Consensus 524 ~~e~~~~lv~~-~~~~~~~~t~~~l~~~~~~~-~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 601 (1276)
+.+.+++|++. .+++ +..+....+..... ..+...+..+.+++|++.++++|.....- .|..+-|...|++
T Consensus 160 ~~~~~~~Ll~~~~~~i--~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Li~~ga~~n~~~~~g-----~t~L~~a~~~~~~ 232 (285)
T d1wdya_ 160 HVEVLKILLDEMGADV--NACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERG-----KTPLILAVEKKHL 232 (285)
T ss_dssp CHHHHHHHHHTSCCCT--TCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTS-----CCHHHHHHHTTCH
T ss_pred CHHHHHHHHhccCCCc--ccccCCCCcccccccccccchHHHHHHHHHHHCCCCCCccCCCC-----CCccchhhhcCcH
Confidence 88888888764 2333 33322222222222 23334444556777777777776322111 2333333356777
Q ss_pred HHHHHHHhh-hhhccCCCChhhhhhhHHHhhhccCCCCHHHHHHHHHH
Q psy9003 602 EQLKYLVDE-CHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDE 648 (1276)
Q Consensus 602 e~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 648 (1276)
|-+++|++. ++++|.+-+.- -++++-|..+|+.|.+++|++.
T Consensus 233 ~~v~~lL~~~g~din~~d~~G-----~TpL~~A~~~~~~eiv~~Ll~~ 275 (285)
T d1wdya_ 233 GLVQRLLEQEHIEINDTDSDG-----KTALLLAVELKLKKIAELLCKR 275 (285)
T ss_dssp HHHHHHHHSSSCCTTCCCTTS-----CCHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCcCCCCCC-----CCHHHHHHHcCCHHHHHHHHHC
Confidence 888877764 55555432221 3455555556777777777653
|
| >d1eh9a1 b.1.18.2 (A:1-90) Glycosyltrehalose trehalohydrolase, N-terminal domain N {Archaeon Sulfolobus solfataricus, km1 [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: E set domains family: E-set domains of sugar-utilizing enzymes domain: Glycosyltrehalose trehalohydrolase, N-terminal domain N species: Archaeon Sulfolobus solfataricus, km1 [TaxId: 2287]
Probab=99.09 E-value=1e-11 Score=114.40 Aligned_cols=75 Identities=13% Similarity=0.054 Sum_probs=61.5
Q ss_pred ccCeeecCceEEEEEccCCcEEEEEccCCCCccccccceecCCCeEEEEcCCCCCCCcccCcccEEEEEEEEeCCeeeee
Q psy9003 773 EQLKYLVDECHKAGLLCFMHVVCAAGDFNNWNREEFAYKKLDFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHGHLLDR 852 (1276)
Q Consensus 773 ~G~~y~~D~a~FalwAP~A~~VsLvGDFN~wd~~~~pM~r~~~GVWsl~Ip~~~~G~~~i~hGs~YkYrV~~~dG~~~~~ 852 (1276)
.|+++..++++|++|||+|++|+|+++ ++..++|++.+.|+|++++++...| ..|+|+|. ++. .+
T Consensus 2 ~Ga~~~~~gv~FrvwAP~A~~V~l~~~----~~~~~~m~~~~~G~W~~~v~~~~~G-------~~Y~y~v~--~~~--~~ 66 (90)
T d1eh9a1 2 FAYKIDGNEVIFTLWAPYQKSVKLKVL----EKGLYEMERDEKGYFTITLNNVKVR-------DRYKYVLD--DAS--EI 66 (90)
T ss_dssp CSCCBSSSCEECCEECTTCSCCBCCCS----SSCCCCCCCCTTSEECCEESSCCSC-------CEECEECT--TSC--EE
T ss_pred cceEEeCCCEEEEEECCCCCEEEEEee----cCCcccceeCCCCEEEEEeCCCCCC-------ceeEEEEe--CCc--Cc
Confidence 477888899999999999999999864 2356899999999999999987665 69999993 343 46
Q ss_pred cCCcceEeec
Q psy9003 853 LSPWATYVTE 862 (1276)
Q Consensus 853 ~DPYAkav~~ 862 (1276)
.|||+++...
T Consensus 67 ~DP~s~~~~~ 76 (90)
T d1eh9a1 67 PDPASRYQPE 76 (90)
T ss_dssp CCTTCSCCTT
T ss_pred CCccHhcCCC
Confidence 8999987543
|
| >d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.99 E-value=1e-10 Score=119.06 Aligned_cols=51 Identities=14% Similarity=0.023 Sum_probs=31.2
Q ss_pred ccccCCChhHHHHHhhhcccccCCCChhhhhcccccchhccccCCHhHHHhhccc
Q psy9003 385 KAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDE 439 (1276)
Q Consensus 385 ~a~~~~~id~vkyLi~~~h~~~~~~~~~~~~~~vt~lh~a~~~~~~~~~~yli~~ 439 (1276)
.|..+|++++|+.|+.....+.-..+.+|. ||||.|+..|+.++|++||+.
T Consensus 6 ~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~----TpL~~A~~~g~~~iv~~Ll~~ 56 (229)
T d1ixva_ 6 QACMENEFFKVQELLHSKPSLLLQKDQDGR----IPLHWSVSFQAHEITSFLLSK 56 (229)
T ss_dssp HHHHHTCHHHHHHHHHHCGGGTTCCCTTSC----CHHHHHHHTTCHHHHHHHHTT
T ss_pred HHHHcCCHHHHHHHHHcCCCcccccCCCCC----CHHHHHHHcCCccccchhhhh
Confidence 334445666666665443333334455666 777777777777777777764
|
| >d2bhua1 b.1.18.2 (A:14-110) Glycosyltrehalose trehalohydrolase, N-terminal domain N {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: E set domains family: E-set domains of sugar-utilizing enzymes domain: Glycosyltrehalose trehalohydrolase, N-terminal domain N species: Deinococcus radiodurans [TaxId: 1299]
Probab=98.99 E-value=2e-10 Score=107.18 Aligned_cols=73 Identities=18% Similarity=0.126 Sum_probs=57.2
Q ss_pred cccCeeec--CceEEEEEccCCcEEEEEccCCCCccccccceecCCCeEEEEcCCCCCCCcccCcccEEEEEEEEeCCee
Q psy9003 772 PEQLKYLV--DECHKAGLLCFMHVVCAAGDFNNWNREEFAYKKLDFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHGHL 849 (1276)
Q Consensus 772 p~G~~y~~--D~a~FalwAP~A~~VsLvGDFN~wd~~~~pM~r~~~GVWsl~Ip~~~~G~~~i~hGs~YkYrV~~~dG~~ 849 (1276)
|+|+.... ++++|++|||+|++|.|+++. ..++|.+.+.|+|+++++ ... |..|+|+| ||.+
T Consensus 11 ~lGa~~~~~~~g~~FrvwAP~A~~V~l~~~~-----~~~~m~~~~~G~w~~~~~-~~~-------G~~Y~y~v---dg~~ 74 (97)
T d2bhua1 11 RLGATPLPGGAGTRFRLWTSTARTVAVRVNG-----TEHVMTSLGGGIYELELP-VGP-------GARYLFVL---DGVP 74 (97)
T ss_dssp CSEEEECGGGCCEEEEEECSSCSSEEEEETT-----EEEECEEEETTEEEEEES-CCT-------TCEEEEEE---TTEE
T ss_pred ccCCeEeCCCCeEEEEEECCCCCEeEEEeeC-----CccCCEEccCEEEEEEcC-CCC-------CCEEEEEE---CCeE
Confidence 44544433 368999999999999999743 467999999999999997 334 46999998 6764
Q ss_pred eeecCCcceEeec
Q psy9003 850 LDRLSPWATYVTE 862 (1276)
Q Consensus 850 ~~~~DPYAkav~~ 862 (1276)
+.|||+++...
T Consensus 75 --~~DPyar~~~~ 85 (97)
T d2bhua1 75 --TPDPYARFLPD 85 (97)
T ss_dssp --ECCTTCSCCTT
T ss_pred --ccCCchhcCCC
Confidence 78999988643
|
| >d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: Myosin phosphatase targeting subunit 1, MYPT1 species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=98.92 E-value=3.2e-10 Score=119.47 Aligned_cols=246 Identities=16% Similarity=0.043 Sum_probs=140.5
Q ss_pred hhhhcccccCCCHHHHHHHhhhhhccCCCCcccchhhhhccccccccCCChhhhHHhhhhhccccC-CCChhhHHHHHhh
Q psy9003 304 VDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGL-FGTPEQLKYLVDE 382 (1276)
Q Consensus 304 ~~~~~~a~~~gsi~~l~~Lv~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~ie~~~yLi~~~h~~~~-~~~~e~~~~~~~~ 382 (1276)
-|....|+..|+++++++|++.. +++|..|. ...|+.+.|+..|++|+|++|++....... ........+.
T Consensus 41 ~t~l~~A~~~G~~~~v~~Ll~~G--advn~~d~---~G~T~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~~L~~--- 112 (291)
T d1s70b_ 41 GAVFLAACSSGDTEEVLRLLERG--ADINYANV---DGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHA--- 112 (291)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHC--CCTTCBCT---TCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHH---
T ss_pred chHHHHHHHcCCHHHHHHHHHCC--CCCCccCC---CCCcHHHHHHhcCCceeeeeecccccccccccccccccccc---
Confidence 46678888899999999999865 44443332 234667888899999999999987643332 1111111111
Q ss_pred hcccccCCChhHHHHHhhhcccccCCCChhhhhcccccchhccccCCHhHHHhhcccccccccCCChhhHHHHHHHHhHh
Q psy9003 383 CHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKA 462 (1276)
Q Consensus 383 ~~~a~~~~~id~vkyLi~~~h~~~~~~~~~~~~~~vt~lh~a~~~~~~~~~~yli~~~~~~~~~~~~e~l~~l~~~~~~~ 462 (1276)
+...|+.|++++|+..... .-..+.++. |+++.|+..+..+.++.+++..-.....................
T Consensus 113 ---a~~~~~~~~~~~l~~~~~~-~~~~~~~~~----~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (291)
T d1s70b_ 113 ---AASCGYLDIAEYLISQGAH-VGAVNSEGD----TPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQW 184 (291)
T ss_dssp ---HHHHTCHHHHHHHHHTTCC-TTCCCTTSC----CHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred ---cccccccchhhcccccCcc-cccccccCc----cccccccccccchhccccccccccccccccccccccccccchhh
Confidence 1224789999999975432 233455566 89999999999999999886543322111111100000000000
Q ss_pred ccCCChhhHHHhhhhhcccccCCChhhhhhhhhhhhhhccCCCHHHHHHHhhhhcccccCCCHHHHHHHHhhhhhcCCCC
Q psy9003 463 GLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFG 542 (1276)
Q Consensus 463 ~~~~~~~~~~~~v~~~~~a~~~~~~e~~~~lv~~~~~~~~~~~~~~~~~~~t~~~~a~~~g~~e~~~~lv~~~~~~~~~~ 542 (1276)
....... ..... ++..|+.+.|..+|+.+++++|+..+.++|..+
T Consensus 185 ---------------~~~~~~~---------------~~~~~-----~~g~t~L~~a~~~~~~~~~~~Ll~~g~din~~~ 229 (291)
T d1s70b_ 185 ---------------LNSGHIN---------------DVRHA-----KSGGTALHVAAAKGYTEVLKLLIQARYDVNIKD 229 (291)
T ss_dssp ---------------HHHTCCC---------------CCCCT-----TTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCC
T ss_pred ---------------hcccccc---------------ccccc-----CCCCChhhHHHHcCChhhhcccccceecccccc
Confidence 0000000 00000 122455666666777777777777777766544
Q ss_pred CcchhhhhhhhhhccccCCCHHHHHHHHHhhhhccCC--CChhhhhhhhhhhcccccCCCHHHHHHHHhhhhhccC
Q psy9003 543 TPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLF--GTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGL 616 (1276)
Q Consensus 543 t~~~l~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~ 616 (1276)
. +.-|..+.|+..|+.|-+++|.+.++++|.. ....-|++ |.. +.+++|.++.++.|+
T Consensus 230 ~-----~g~TpL~~A~~~g~~~iv~lLl~~Gadv~~~d~~G~TaL~~-------A~e----~~~~~L~~~~~~~~~ 289 (291)
T d1s70b_ 230 Y-----DGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDV-------ADE----DILGYLEELQKKQNL 289 (291)
T ss_dssp T-----TCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTTTS-------CCS----GGGHHHHHHHHHTTS
T ss_pred c-----CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHH-------HHH----HHHHHHHHHhhhccC
Confidence 4 3344556666777777777777777777732 22222333 222 467777777766664
|
| >d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Pseudo ankyrin repeat-like family: Pseudo ankyrin repeat domain: Hypothetical protein LPG2416 species: Legionella pneumophila [TaxId: 446]
Probab=98.92 E-value=2.2e-10 Score=127.00 Aligned_cols=223 Identities=12% Similarity=-0.009 Sum_probs=141.8
Q ss_pred hhhhcccccCCChhhhhh---hhhhhhhhccCCCHHHHHHHhhhhcccccCCCHHHHHHHHhhhhhcCCCCCcchhhhhh
Q psy9003 475 VDECHKAGLFGTPEQLKY---LVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLV 551 (1276)
Q Consensus 475 v~~~~~a~~~~~~e~~~~---lv~~~~~~~~~~~~~~~~~~~t~~~~a~~~g~~e~~~~lv~~~~~~~~~~t~~~l~~~~ 551 (1276)
-|..+.|..+|+.|.|++ |+...+.+|.... ...|+.+.|+.+|++|+||+|++.+++++..+.. ..+.
T Consensus 91 ~t~L~~Aa~~g~~~~~~~~~~L~~~~~~in~~~~-----~g~taL~~Aa~~G~~~~v~~Ll~~g~~~~~~~~~---~~g~ 162 (346)
T d2ajaa1 91 EVICFVAAITGCSSALDTLCLLLTSDEIVKVIQA-----ENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQ---AENY 162 (346)
T ss_dssp HHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CH-----HHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHS---HHHH
T ss_pred CcHHHHHHHhCCHHHHHHHHHHHhCCCcccccCC-----CCCCHHHHHHHCCCHHHHHHHHHcCCCccccccc---cCCC
Confidence 477788889998776554 7777777776543 5589999999999999999999998877643210 0245
Q ss_pred hhhhccccCCCHHHHHHHHHhhhhcc-CCCChhhhhhhhhhhcccccCCCHHHHHHHHhhhhhccCCCChhhhhhhHHHh
Q psy9003 552 DECHKAGLFGTPEQLKYLVDECHKAG-LFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDEC 630 (1276)
Q Consensus 552 ~~~~~~~~~~~~e~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 630 (1276)
|..+.|...|.+|.+++|++.++... .+..+ +-..+..+.|...|++|.+++|++.+++++.. .
T Consensus 163 t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~---~~~~t~l~~A~~~g~~~iv~~Ll~~ga~~~~~------------~ 227 (346)
T d2ajaa1 163 HAFRLAAENGHLHVLNRLCELAPTEATAMIQA---ENYYAFRWAAVGRGHHNVINFLLDCPVMLAYA------------E 227 (346)
T ss_dssp HHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHH---HHHHHHHHHHSTTCCHHHHHHHTTSHHHHHHH------------H
T ss_pred ChhHHHHHHhhHHHHHHHHHcCCccccccccc---CCCcchhhHHhhcCHHHHHHHHHhCCCCcchH------------H
Confidence 67777889999999999999877653 11111 01234445566899999999999998877421 1
Q ss_pred hhccCCCCHHHHHHHHH----------HHHhhcCCCChH--------HHhhhhhhhhhcccCCChhHHHHHHHHHHhh--
Q psy9003 631 HKAGLFGTPEQLKYLVD----------ECHKAGLFGTPE--------QLKYLVDECHKAGLFGTPEQLKYLVDECHKA-- 690 (1276)
Q Consensus 631 ~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 690 (1276)
..+...+.....+.++. +...++..+..+ ...+.+..++.|...|.++.+++|+..-.-.
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~ld~v~~Ll~~~~~~~~ 307 (346)
T d2ajaa1 228 IHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKAL 307 (346)
T ss_dssp HCTTTTTTTTHHHHHHHHHHHHHHHHTTTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCCGGGHHHHHHHHTSTTTGGG
T ss_pred HHHHHcCcHhhhHHHHHhhccchHHHHHHHHhcccccHhHHhcccccccchhhhHHHHHhcCChHHHHHHHHhCcChhhh
Confidence 11222233333333322 233333344333 2234556788888888888888888521100
Q ss_pred -ccCCChhHHHhhHHHHhhcccCCCHHHHHHHHH
Q psy9003 691 -GLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVD 723 (1276)
Q Consensus 691 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 723 (1276)
....++. .--+++|-|+.+|+.|.+|+|++
T Consensus 308 ~~~~~~~~---~g~T~LhlA~~~Gn~e~v~lLL~ 338 (346)
T d2ajaa1 308 APTATIPG---DANELLRLALRLGNQGACALLLS 338 (346)
T ss_dssp SSCCSSTT---CCCHHHHHHHHHTCTTHHHHHTT
T ss_pred cccccCCC---CCCcHHHHHHHcCcHHHHHHHhC
Confidence 0000100 11257899999999999999986
|
| >d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: Lin-12 species: Caenorhabditis elegans [TaxId: 6239]
Probab=98.92 E-value=9.7e-11 Score=121.83 Aligned_cols=258 Identities=13% Similarity=0.032 Sum_probs=156.6
Q ss_pred CChhHHHHHhhhcccccCCCChhhhhcccccchhccccCCHhHHHhhcccccccccCCChhhHHHHHHHHhHhccCCChh
Q psy9003 390 GTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPE 469 (1276)
Q Consensus 390 ~~id~vkyLi~~~h~~~~~~~~~~~~~~vt~lh~a~~~~~~~~~~yli~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~~ 469 (1276)
|+.++++.|+++ ++++..++.|. ||||.|+..|+.++|++|+..+. +.+......+|..+...
T Consensus 12 ~~~~~~~~l~~~--~~n~~~~~~g~----T~Lh~A~~~g~~~~v~~Ll~~~~-----------~~~l~~Gadvn~~d~~G 74 (277)
T d2fo1e1 12 GSYAITEPITRE--SVNIIDPRHNR----TVLHWIASNSSAEKSEDLIVHEA-----------KECIAAGADVNAMDCDE 74 (277)
T ss_dssp SSSCCCSCCSTT--TTTTCCCSSCC----CHHHHHHCTTCCSCCTTHHHHHH-----------HHHHHTCCCTTCCCTTS
T ss_pred CCHHHHHHHHhc--CCCcCCCCCCc----cHHHHHHHcCCHHHHHHHHhcch-----------hHHHHcCCCccccCCCC
Confidence 566666667664 35555555677 99999999999999999985443 23333334455444444
Q ss_pred hHHHhhhhhcccccCCChhhhhhhhhhhhhhccCCCHHHHHHHhhhhcccccCCCHHHHHHHHhhhhhcC-CCCCcchhh
Q psy9003 470 QLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAG-LFGTPEQLK 548 (1276)
Q Consensus 470 ~~~~~v~~~~~a~~~~~~e~~~~lv~~~~~~~~~~~~~~~~~~~t~~~~a~~~g~~e~~~~lv~~~~~~~-~~~t~~~l~ 548 (1276)
-|..|.|...|+.|-+++|++.++++|.+.. ...|..+.|...|+.+.++++........ ++..+....
T Consensus 75 -----~TpLh~A~~~g~~~iv~~Ll~~Gad~n~~~~-----~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 144 (277)
T d2fo1e1 75 -----NTPLMLAVLARRRRLVAYLMKAGADPTIYNK-----SERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGM 144 (277)
T ss_dssp -----CCHHHHHHHHTCHHHHHHHHHTTCCSCCCCT-----TCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSC
T ss_pred -----Ceeeccccccccccccccccccccccccccc-----cccccccchhhhcchhhhhhhhhcccccccccccccccc
Confidence 6888999999999999999999888887654 34577778888999999999887654332 222222111
Q ss_pred hhhhhhhccccCCCHHHHHHHHHhhhhccCCCChh---hhhhhhhhhcccccCCCHHHHHHHHhh-hhhccCCCChhhhh
Q psy9003 549 YLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPE---QLKYLVDECHKAGLFGTPEQLKYLVDE-CHKAGLFGTPEQLK 624 (1276)
Q Consensus 549 ~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~e~~~~l~~~-~~~~~~~~~~~~~~ 624 (1276)
..............+..+.++.............. .-....+..+.+...++.+.++++... +..++.+ +...
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~~~~~~~~~~~~~~l~~~~~~~~~~-d~~g-- 221 (277)
T d2fo1e1 145 TALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQ-DEDG-- 221 (277)
T ss_dssp CHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCC-CTTC--
T ss_pred hhHHHHHhcccccccccccccccccccccccccccccccccCCCCcccccccccccccccccccccccccccc-CCCC--
Confidence 11111223334455666666666544433111000 000124556677788899998875543 3333322 2211
Q ss_pred hhHHHhhhccCCCCHHHHHHHHHHHHhhcCCCChHHHhhhhhhhhhcccCCChhHHHHHH
Q psy9003 625 YLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLV 684 (1276)
Q Consensus 625 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 684 (1276)
-+.++-|..+|.+|.+++|++.-... +... ++--+++|.|..+|+.|++|+|.
T Consensus 222 --~tpL~~A~~~g~~~iv~~Ll~~gadi--n~~d---~~G~T~L~~A~~~~~~~iv~lL~ 274 (277)
T d2fo1e1 222 --KTPIMLAAQEGRIEVVMYLIQQGASV--EAVD---ATDHTARQLAQANNHHNIVDIFD 274 (277)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHTTCCS--SCCC---SSSCCHHHHHHHTTCHHHHHHHH
T ss_pred --CCHHHHHHHcCCHHHHHHHHHCcCCC--CCcC---CCCCCHHHHHHHcCCHHHHHHHH
Confidence 23344444458888888888632111 1100 12234788888888888888775
|
| >d1bf2a1 b.1.18.2 (A:1-162) Isoamylase, N-terminal domain N {Pseudomonas amyloderamosa [TaxId: 32043]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: E set domains family: E-set domains of sugar-utilizing enzymes domain: Isoamylase, N-terminal domain N species: Pseudomonas amyloderamosa [TaxId: 32043]
Probab=98.91 E-value=8.7e-10 Score=111.18 Aligned_cols=108 Identities=9% Similarity=0.035 Sum_probs=69.6
Q ss_pred CCCCcccCeeecCce--EEEEEccCCcEEEEEccCCCCc---cccccceecCCCeEEEEcCCCCCCCcccCcccEEEEEE
Q psy9003 768 LFGTPEQLKYLVDEC--HKAGLLCFMHVVCAAGDFNNWN---REEFAYKKLDFGKWELVLPPNPDGSCKLTHLSQVKLVV 842 (1276)
Q Consensus 768 ~~Gtp~G~~y~~D~a--~FalwAP~A~~VsLvGDFN~wd---~~~~pM~r~~~GVWsl~Ip~~~~G~~~i~hGs~YkYrV 842 (1276)
++..|+|++|..+++ +|+||||+|++|.|+.-.+.++ ...++|.++..|+|+++++....+.-.+.+|.+|.|||
T Consensus 2 ~~~~~LGa~~~~~g~~v~F~vwAp~A~~V~L~ly~~~~~~~~~~~~~l~~~~~gvW~~~v~~~~~~~~g~~~G~~Y~yrv 81 (162)
T d1bf2a1 2 INSMSLGASYDAQQANITFRVYSSQATRIVLYLYSAGYGVQESATYTLSPAGSGVWAVTVPVSSIKAAGITGAVYYGYRA 81 (162)
T ss_dssp CSTTCCEEEECTTSSEEEEEEECSSCSEEEEEEESSSSSCCCSEEEECEECSTTEEEEEEEHHHHHHTTCCSCCEEEEEE
T ss_pred CCCcCCccEEeCCCeeEEEEEECCCCCEEEEEEEcCCCCCcceeEEEcccccccEEEEEecccccccccCCCCcEEEEEE
Confidence 367899999999987 6999999999999984222222 24689998899999999972100000123457999999
Q ss_pred EEeCCeeeeecCCcceEeecCCCCCccccceeeCCC
Q psy9003 843 RNQHGHLLDRLSPWATYVTEPPVVGHAYEQRIWNPK 878 (1276)
Q Consensus 843 ~~~dG~~~~~~DPYAkav~~~~~~s~v~~~~~~~p~ 878 (1276)
.+ .+-...+||++........+...+...++|.
T Consensus 82 ~G---p~~p~~~~~~~~~~~~~~~~~~~~g~rfnp~ 114 (162)
T d1bf2a1 82 WG---PNWPYASNWGKGSQAGFVSDVDANGDRFNPN 114 (162)
T ss_dssp EB---TTBCCCTTCCTTCCTTCCCSSCTTCCCCCTT
T ss_pred cc---ccCcccccccccccccccccccccceeeChh
Confidence 64 3334556666554444333333333344443
|
| >d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: Cell cycle inhibitor p19ink4D species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.87 E-value=1.6e-09 Score=105.47 Aligned_cols=147 Identities=17% Similarity=0.072 Sum_probs=106.3
Q ss_pred cccccCCChHHHHHHHhhhhccCCCCCccccchhhhhhcccccCCCHHHHHHHhhhhhccCCCCcccchhhhhccccccc
Q psy9003 270 HKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAG 349 (1276)
Q Consensus 270 h~~~~~~~ie~~~yli~e~~~~~~~~~~~~~t~~~~~~~~a~~~gsi~~l~~Lv~~~~~~~~~~~~~~~~~~~~~~~~a~ 349 (1276)
|.|.+.|++|+||+|++...++|-..+..|.|-+ | ++..|+.+.+++|++.....+.... ...+....++
T Consensus 7 ~~Aa~~g~~~~vk~lL~~~~~~~n~~d~~g~t~L----~-~A~~~~~~~v~~Ll~~~~~~~~~~~-----~~~~~l~~~~ 76 (156)
T d1bd8a_ 7 SGAAARGDVQEVRRLLHRELVHPDALNRFGKTAL----Q-VMMFGSTAIALELLKQGASPNVQDT-----SGTSPVHDAA 76 (156)
T ss_dssp HHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHH----H-HSCTTCHHHHHHHHHTTCCTTCCCT-----TSCCHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHhCCCCCCccCCCCCccc----c-ccccccccccccccccccccccccc-----cccccccccc
Confidence 4566678888999998877778766676666665 4 3346899999999987655443221 2234567788
Q ss_pred cCCChhhhHHhhhhhccccC-CCChhhHHHHHhhhcccccCCChhHHHHHhhhcccccCCCChhhhhcccccchhccccC
Q psy9003 350 LFGTPEQLKYLVDECHKAGL-FGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFG 428 (1276)
Q Consensus 350 ~~g~ie~~~yLi~~~h~~~~-~~~~e~~~~~~~~~~~a~~~~~id~vkyLi~~~h~~~~~~~~~~~~~~vt~lh~a~~~~ 428 (1276)
..+++++++++++-+-..+. +...+... +.|...|+.|+++||+. ++++-..+.++. ||||.|+.+|
T Consensus 77 ~~~~~~~~~~~l~~~~~~n~~~~~~~t~L------~~A~~~~~~~i~~~L~~--~~~~~~~d~~G~----TpL~~A~~~g 144 (156)
T d1bd8a_ 77 RTGFLDTLKVLVEHGADVNVPDGTGALPI------HLAVQEGHTAVVSFLAA--ESDLHRRDARGL----TPLELALQRG 144 (156)
T ss_dssp HTTCHHHHHHHHHTTCCSCCCCTTSCCHH------HHHHHHTCHHHHHHHHT--TSCTTCCCTTSC----CHHHHHHHSC
T ss_pred ccccccccccccccccccccccCCCCeee------ccccccccccccccccc--cccccccCCCCC----CHHHHHHHcC
Confidence 89999999999986543332 22222222 22333589999999984 667766788888 9999999999
Q ss_pred CHhHHHhhcc
Q psy9003 429 TPEQLKYLVD 438 (1276)
Q Consensus 429 ~~~~~~yli~ 438 (1276)
+.+++++|++
T Consensus 145 ~~~iv~~Ll~ 154 (156)
T d1bd8a_ 145 AQDLVDILQG 154 (156)
T ss_dssp CHHHHHHHHT
T ss_pred CHHHHHHHHh
Confidence 9999999986
|
| >d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: Lin-12 species: Caenorhabditis elegans [TaxId: 6239]
Probab=98.85 E-value=3.9e-10 Score=117.19 Aligned_cols=232 Identities=13% Similarity=-0.029 Sum_probs=140.9
Q ss_pred hhhhhhhcccCCCCHHHHHhhhhhhcccccCCChHHHHHHHhhhhccCCCCCccccchhhhhhcccccCCCHHHHHHHhh
Q psy9003 245 YLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVD 324 (1276)
Q Consensus 245 ~l~~~~~~~~~~g~~~~~~~li~~~h~~~~~~~ie~~~yli~e~~~~~~~~~~~~~t~~~~~~~~a~~~gsi~~l~~Lv~ 324 (1276)
+.-+.+|.|+..|+.+++++|+.... +++|+.. =|+-+.+..| .|++|.|+..|++|++++|++
T Consensus 32 ~g~T~Lh~A~~~g~~~~v~~Ll~~~~-----------~~~l~~G-advn~~d~~G----~TpLh~A~~~g~~~iv~~Ll~ 95 (277)
T d2fo1e1 32 HNRTVLHWIASNSSAEKSEDLIVHEA-----------KECIAAG-ADVNAMDCDE----NTPLMLAVLARRRRLVAYLMK 95 (277)
T ss_dssp SCCCHHHHHHCTTCCSCCTTHHHHHH-----------HHHHHTC-CCTTCCCTTS----CCHHHHHHHHTCHHHHHHHHH
T ss_pred CCccHHHHHHHcCCHHHHHHHHhcch-----------hHHHHcC-CCccccCCCC----Ceeeccccccccccccccccc
Confidence 34455699998888888888885554 4555411 1233334444 445577778999999999998
Q ss_pred hhhccCCCCcccchhhhhccccccccCCChhhhHHhhhhhcccc----CCCChhhHHHHHhhhcccccCCChhHHHHHhh
Q psy9003 325 ECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAG----LFGTPEQLKYLVDECHKAGLFGTPEQLKYLVD 400 (1276)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~a~~~g~ie~~~yLi~~~h~~~----~~~~~e~~~~~~~~~~~a~~~~~id~vkyLi~ 400 (1276)
..-. ++..+. ...+..+.|+..|+.+++++++....... .+............. ....++.+++++..
T Consensus 96 ~Gad--~n~~~~---~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 167 (277)
T d2fo1e1 96 AGAD--PTIYNK---SERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHN---EGRDQVASAKLLVE 167 (277)
T ss_dssp TTCC--SCCCCT---TCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHS---CSTTHHHHHHHHHH
T ss_pred cccc--cccccc---cccccccchhhhcchhhhhhhhhcccccccccccccccchhHHHHHhc---cccccccccccccc
Confidence 7433 332221 12355567788899999999987753221 111111111221111 11345666666665
Q ss_pred hccccc-------CCCChhhhhcccccchhccccCCHhHHHhhcccccccccCCChhhHHHHHHHHhHhccCCChhhHHH
Q psy9003 401 ECHKAG-------LFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKY 473 (1276)
Q Consensus 401 ~~h~~~-------~~~~~~~~~~~vt~lh~a~~~~~~~~~~yli~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~~~~~~ 473 (1276)
...+.. ...+.++. |+||.++..++.+++++++..........+.++
T Consensus 168 ~~~~~~~~~~~~~~~~~~~g~----t~L~~~~~~~~~~~~~~~l~~~~~~~~~~d~~g---------------------- 221 (277)
T d2fo1e1 168 KGAKVDYDGAARKDSEKYKGR----TALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDG---------------------- 221 (277)
T ss_dssp HTCCSSCCSGGGTSSSSCCCC----CTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTC----------------------
T ss_pred ccccccccccccccccccCCC----CccccccccccccccccccccccccccccCCCC----------------------
Confidence 444433 22233344 999999999999999987765544333322222
Q ss_pred hhhhhcccccCCChhhhhhhhhhhhhhccCCCHHHHHHHhhhhcccccCCCHHHHHHHH
Q psy9003 474 LVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLV 532 (1276)
Q Consensus 474 ~v~~~~~a~~~~~~e~~~~lv~~~~~~~~~~~~~~~~~~~t~~~~a~~~g~~e~~~~lv 532 (1276)
.|..|.|..+|..|-+++|++.+.++|..+. +..|+.+.|+..|+.|++++|.
T Consensus 222 -~tpL~~A~~~g~~~iv~~Ll~~gadin~~d~-----~G~T~L~~A~~~~~~~iv~lL~ 274 (277)
T d2fo1e1 222 -KTPIMLAAQEGRIEVVMYLIQQGASVEAVDA-----TDHTARQLAQANNHHNIVDIFD 274 (277)
T ss_dssp -CCHHHHHHHHTCHHHHHHHHHTTCCSSCCCS-----SSCCHHHHHHHTTCHHHHHHHH
T ss_pred -CCHHHHHHHcCCHHHHHHHHHCcCCCCCcCC-----CCCCHHHHHHHcCCHHHHHHHH
Confidence 3556666667777777777777766665554 3457777777777777777775
|
| >d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: p18ink4C(ink6) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.83 E-value=9.4e-10 Score=105.82 Aligned_cols=152 Identities=18% Similarity=0.101 Sum_probs=108.1
Q ss_pred hhcccccCCChHHHHHHHhhhhccCCCCCccccchhhhhhcccccCCCHHHHHHHhhhhhccCCCCcccchhhhhccccc
Q psy9003 268 ECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHK 347 (1276)
Q Consensus 268 ~~h~~~~~~~ie~~~yli~e~~~~~~~~~~~~~t~~~~~~~~a~~~gsi~~l~~Lv~~~~~~~~~~~~~~~~~~~~~~~~ 347 (1276)
.-|.|.+.|++|+|++|++. .+|+-..++.|.|-+ |-| ..|++|++++|++..-...+-+. ...+..+.
T Consensus 4 ~Lh~Aa~~g~~~~v~~Ll~~-g~d~n~~d~~g~TpL----~~A-~~~~~ei~~~Ll~~~a~~~~~~~-----~~~~~l~~ 72 (156)
T d1ihba_ 4 ELASAAARGDLEQLTSLLQN-NVNVNAQNGFGRTAL----QVM-KLGNPEIARRLLLRGANPDLKDR-----TGFAVIHD 72 (156)
T ss_dssp HHHHHHHHTCHHHHHHHTTS-CCCTTCCCTTSCCHH----HHC-CSSCHHHHHHHHHTTCCTTCCCT-----TSCCHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHC-CCCcCccCCcccccc----ccc-ccccccccccccccccccccccc-----cCcccccc
Confidence 34666777888888888883 577776777777766 423 47999999999986543332211 12355567
Q ss_pred cccCCChhhhHHhhhhhccccCC-CChhhHHHHHhhhcccccCCChhHHHHHhhhcccccCCCChhhhhcccccchhccc
Q psy9003 348 AGLFGTPEQLKYLVDECHKAGLF-GTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGL 426 (1276)
Q Consensus 348 a~~~g~ie~~~yLi~~~h~~~~~-~~~e~~~~~~~~~~~a~~~~~id~vkyLi~~~h~~~~~~~~~~~~~~vt~lh~a~~ 426 (1276)
++..|+++++++|+.-....+.. .......+ .|...|+.|++++|+.-+-.++...+.++. ||||.|+.
T Consensus 73 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~------~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g~----TpL~~A~~ 142 (156)
T d1ihba_ 73 AARAGFLDTLQTLLEFQADVNIEDNEGNLPLH------LAAKEGHLRVVEFLVKHTASNVGHRNHKGD----TACDLARL 142 (156)
T ss_dssp HHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHH------HHHHTTCHHHHHHHHHHSCCCTTCCCTTSC----CHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccc------cccccccccccccccccccccccccCCCCC----CHHHHHHH
Confidence 77889999999998765544421 11121112 233358999999999988878888888888 99999999
Q ss_pred cCCHhHHHhhcccc
Q psy9003 427 FGTPEQLKYLVDEC 440 (1276)
Q Consensus 427 ~~~~~~~~yli~~~ 440 (1276)
.++.++|++|++.+
T Consensus 143 ~~~~~iv~~Ll~~G 156 (156)
T d1ihba_ 143 YGRNEVVSLMQANG 156 (156)
T ss_dssp TTCHHHHHHHHHTC
T ss_pred cCCHHHHHHHHhcC
Confidence 99999999998753
|
| >d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: Myosin phosphatase targeting subunit 1, MYPT1 species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=98.82 E-value=9.9e-10 Score=115.64 Aligned_cols=91 Identities=20% Similarity=0.139 Sum_probs=65.7
Q ss_pred hhhhhhhccccCCCHHHHHHHHHhhhhccCCCChhhhhhhhhhhcccccCCCHHHHHHHHhhhhhccCCCChhhhhhhHH
Q psy9003 549 YLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVD 628 (1276)
Q Consensus 549 ~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~ 628 (1276)
+..|..+.|..+|+.+.+++|...++++|....+- -|..+-|...|+.|.+++|++.++++|.+-+.- -+
T Consensus 198 ~g~t~L~~a~~~~~~~~~~~Ll~~g~din~~~~~g-----~TpL~~A~~~g~~~iv~lLl~~Gadv~~~d~~G-----~T 267 (291)
T d1s70b_ 198 SGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDG-----WTPLHAAAHWGKEEACRILVENLCDMEAVNKVG-----QT 267 (291)
T ss_dssp TCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTC-----CCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTS-----CC
T ss_pred CCCChhhHHHHcCChhhhcccccceecccccccCC-----CCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCC-----CC
Confidence 55566777888999999999999999888433332 355566668999999999999999998763222 24
Q ss_pred HhhhccCCCCHHHHHHHHHHHHhhc
Q psy9003 629 ECHKAGLFGTPEQLKYLVDECHKAG 653 (1276)
Q Consensus 629 ~~~~~~~~~~~~~~~~~~~~~~~~~ 653 (1276)
+.+-|.. +.+++|.+..++.+
T Consensus 268 aL~~A~e----~~~~~L~~~~~~~~ 288 (291)
T d1s70b_ 268 AFDVADE----DILGYLEELQKKQN 288 (291)
T ss_dssp TTTSCCS----GGGHHHHHHHHHTT
T ss_pred HHHHHHH----HHHHHHHHHhhhcc
Confidence 5555532 57788877666644
|
| >d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: Neurogenic locus notch receptor domain species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.79 E-value=1.1e-09 Score=109.76 Aligned_cols=54 Identities=17% Similarity=0.107 Sum_probs=41.3
Q ss_pred ChhHHHHHhhhcccccCCCChhhhhcccccchhccccCCHhHHHhhcccccccccCCC
Q psy9003 391 TPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGT 448 (1276)
Q Consensus 391 ~id~vkyLi~~~h~~~~~~~~~~~~~~vt~lh~a~~~~~~~~~~yli~~~~~~~~~~~ 448 (1276)
+-|+||+||...--.+...+.+|. ||||.|+.+|+.++|++||+.+.+......
T Consensus 1 ~~~~v~~Ll~~g~din~~~d~~G~----t~L~~A~~~g~~e~v~~Ll~~g~~~n~~~~ 54 (209)
T d1ot8a_ 1 TAQVISDLLAQGAELNATMDKTGE----TSLHLAARFARADAAKRLLDAGADANSQDN 54 (209)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHCC----CHHHHHHHTTCHHHHHHHHHTTCCTTCCCT
T ss_pred CHHHHHHHHHCCCCcCcCcCCCCC----CHHHHHHHcCCHHHHHHHHhhccccccccc
Confidence 358899999754422233467788 999999999999999999998877655544
|
| >d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Pseudo ankyrin repeat-like family: Pseudo ankyrin repeat domain: Hypothetical protein LPG2416 species: Legionella pneumophila [TaxId: 446]
Probab=98.77 E-value=1.9e-09 Score=119.45 Aligned_cols=206 Identities=13% Similarity=0.016 Sum_probs=136.4
Q ss_pred hhhhcccccCCCHHHHHH---HHhhhhhcCCCCCcchhhhhhhhhhccccCCCHHHHHHHHHhhhhccCC--CChhhhhh
Q psy9003 513 VDECHKAGLFGTPEQLKY---LVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLF--GTPEQLKY 587 (1276)
Q Consensus 513 ~t~~~~a~~~g~~e~~~~---lv~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~--~~~~~~~~ 587 (1276)
.|..+.|+.+|+.++|++ |+..++.+|..+. .+-|..+-|...|.+|.+++|++.+++++.. +.+
T Consensus 91 ~t~L~~Aa~~g~~~~~~~~~~L~~~~~~in~~~~-----~g~taL~~Aa~~G~~~~v~~Ll~~g~~~~~~~~~~~----- 160 (346)
T d2ajaa1 91 EVICFVAAITGCSSALDTLCLLLTSDEIVKVIQA-----ENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAE----- 160 (346)
T ss_dssp HHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CH-----HHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHH-----
T ss_pred CcHHHHHHHhCCHHHHHHHHHHHhCCCcccccCC-----CCCCHHHHHHHCCCHHHHHHHHHcCCCccccccccC-----
Confidence 577888999999888776 6777777776554 5567777888999999999999999887732 112
Q ss_pred hhhhhcccccCCCHHHHHHHHhhhhhccCCCChhhhhhhHHHhhhccCCCCHHHHHHHHHHHHhhcCCCChHHHhhhhhh
Q psy9003 588 LVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDE 667 (1276)
Q Consensus 588 ~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 667 (1276)
..|+.+-|..+|++|.+++|++.++..... ..+...--+..+.|...|++|.+++|++.-...+ .+
T Consensus 161 g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~--~~~~~~~~t~l~~A~~~g~~~iv~~Ll~~ga~~~------------~~ 226 (346)
T d2ajaa1 161 NYHAFRLAAENGHLHVLNRLCELAPTEATA--MIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLA------------YA 226 (346)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHSCGGGHHH--HHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHHHH------------HH
T ss_pred CCChhHHHHHHhhHHHHHHHHHcCCccccc--ccccCCCcchhhHHhhcCHHHHHHHHHhCCCCcc------------hH
Confidence 256777777999999999999987654211 0011222345566778899999999986321110 12
Q ss_pred hhhcccCCChhHHHHHHH----------HHHhhccCCChh--------HHHhhHHHHhhcccCCCHHHHHHHHH------
Q psy9003 668 CHKAGLFGTPEQLKYLVD----------ECHKAGLFGTPE--------QLKYLVDECHKAGLFGTPEQLKYLVD------ 723 (1276)
Q Consensus 668 ~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~------ 723 (1276)
.+.+..+|+....+.++. +++.+......+ ...+.+..++.|...|.++.+++|+.
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~ld~v~~Ll~~~~~~~ 306 (346)
T d2ajaa1 227 EIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKA 306 (346)
T ss_dssp HHCTTTTTTTTHHHHHHHHHHHHHHHHTTTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCCGGGHHHHHHHHTSTTTGG
T ss_pred HHHHHHcCcHhhhHHHHHhhccchHHHHHHHHhcccccHhHHhcccccccchhhhHHHHHhcCChHHHHHHHHhCcChhh
Confidence 222333333333333322 333344333322 23456677888889999999999884
Q ss_pred -------------HHHhccCCCCchhhhhhhh
Q psy9003 724 -------------ECHKAGLFGTPEQLKYLVD 742 (1276)
Q Consensus 724 -------------~~~~~~~~~~~~~~~~~~~ 742 (1276)
.+|-|+..|+.|.+|+|++
T Consensus 307 ~~~~~~~~~~g~T~LhlA~~~Gn~e~v~lLL~ 338 (346)
T d2ajaa1 307 LAPTATIPGDANELLRLALRLGNQGACALLLS 338 (346)
T ss_dssp GSSCCSSTTCCCHHHHHHHHHTCTTHHHHHTT
T ss_pred hcccccCCCCCCcHHHHHHHcCcHHHHHHHhC
Confidence 3888899999999999985
|
| >d2fhfa1 b.1.18.2 (A:288-402) Pullulanase PulA {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: E set domains family: E-set domains of sugar-utilizing enzymes domain: Pullulanase PulA species: Klebsiella pneumoniae [TaxId: 573]
Probab=98.73 E-value=5.2e-09 Score=99.79 Aligned_cols=57 Identities=23% Similarity=0.160 Sum_probs=46.5
Q ss_pred ccceEecCCcEEEEEEccCCceEEEEe-eccCCCcc-----e-------EEEEEccCccccceEEEEEecCCC
Q psy9003 65 YGIHVQADNSVRCFEWAPSAQQLYLTG-NVSLTPWS-----I-------MEEASLSSIKLIQSIQYILTGVFG 124 (1276)
Q Consensus 65 fGah~~~~gg~~f~~wAP~A~~v~l~g-dfn~~~w~-----m-------~~~~~~~~~~~g~~yky~i~~~~g 124 (1276)
|||+...+ |+.|++|||+|++|.|+. |.+ +|. | +|+++++++++|++|+|+|....+
T Consensus 10 lGa~~~~~-g~~F~lwAP~A~~V~L~l~~~~--~~~~~~~~~~~~~~~GvW~~~i~~~~~G~~Y~y~v~~~~~ 79 (115)
T d2fhfa1 10 YGAQLTDS-GVTFRVWAPTAQQVELVIYSAD--KKVIASHPMTRDSASGAWSWQGGSDLKGAFYRYAMTVYHP 79 (115)
T ss_dssp CEEEEETT-EEEEEEECTTCSEEEEEEECTT--CCEEEEEECEECTTTCEEEEEECGGGTTCEEEEEEEEEET
T ss_pred CCeEEeCC-cEEEEEECCCCCEEEEEEECCC--CCccceeeeeEcCCCCEEEEEECCCCCCCEEEEEEEcccc
Confidence 69998655 499999999999999864 442 233 2 999999999999999999986543
|
| >d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: I-kappa-B-alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.71 E-value=2.4e-09 Score=109.46 Aligned_cols=199 Identities=12% Similarity=-0.037 Sum_probs=145.2
Q ss_pred ccchhccccCCHhHHHhhcccccccccCCChhhHHHHHHHHhHhccCCChhhHHHhhhhhcccccCCChhhhhhhhhhhh
Q psy9003 419 DECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECH 498 (1276)
Q Consensus 419 t~lh~a~~~~~~~~~~yli~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~~~~~~~v~~~~~a~~~~~~e~~~~lv~~~~ 498 (1276)
||||.|+..|+.++++++|......+. .+|..+... .|..|.|..+|..+.+++|++.+.
T Consensus 4 t~Lh~A~~~g~~~~~~~li~~~~~~~~---------------~in~~d~~g-----~TpLh~A~~~~~~~iv~~L~~~g~ 63 (221)
T d1iknd_ 4 SFLHLAIIHEEKALTMEVIRQVKGDLA---------------FLNFQNNLQ-----QTPLHLAVITNQPEIAEALLGAGC 63 (221)
T ss_dssp CTTHHHHHTTCSSSSSCCCC-----CC---------------CCCCCCTTC-----CCHHHHHHHTTCHHHHHCCCSCCC
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHhCCC---------------CcccCCCCC-----Cccccccccccccccccccccccc
Confidence 999999999999998888765433221 123233333 588999999999999999999988
Q ss_pred hhccCCCHHHHHHHhhhhcccccCCCHHHHHHHHhhhhhcCCCCCcc-hhhhhhhhhhccccCCCHHHHHHHHHhhhhcc
Q psy9003 499 KAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPE-QLKYLVDECHKAGLFGTPEQLKYLVDECHKAG 577 (1276)
Q Consensus 499 ~~~~~~~~~~~~~~~t~~~~a~~~g~~e~~~~lv~~~~~~~~~~t~~-~l~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~ 577 (1276)
+++.... ...|+.+.++..|+.+++++|...+....-..-.. ......|..+.+...|+++-+++|+..+..++
T Consensus 64 d~~~~d~-----~g~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~ 138 (221)
T d1iknd_ 64 DPELRDF-----RGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVN 138 (221)
T ss_dssp CSCCCCT-----TCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTT
T ss_pred ccccccc-----ccccccccccccccccccchhhhhcccccccccccccccccchhhhHHhhcCChhheeeecccCcccc
Confidence 8876553 23567777888999999999998776655222211 22223456677778999999999999998888
Q ss_pred CCCChhhhhhhhhhhcccccCCCHHHHHHHHhhhhhccCCCChhhhhhhHHHhhhccCCCCHHHHHHHHHHHHh
Q psy9003 578 LFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHK 651 (1276)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 651 (1276)
...... -.|..+.|...|+.|.+++|++.++++|.+-..- .++++-|...++.+.+++|..-..+
T Consensus 139 ~~~~~~----G~T~L~~A~~~g~~~~v~~Ll~~gad~~~~~~~G-----~tpl~~A~~~~~~~~~~~l~~~~~~ 203 (221)
T d1iknd_ 139 AQEPCN----GRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQG-----YSPYQLTWGRPSTRIQQQLGQLTLE 203 (221)
T ss_dssp CCCTTT----CCCHHHHHHHTTCHHHHHHHHTTTCCSCCCCTTC-----CCGGGGCTTSSCHHHHHHHHTTSCG
T ss_pred cccccC----CCCccccccccccHHHHHHHHhcCCcccccCCCC-----CCHHHHHHHCCCHHHHHHHHHcCCc
Confidence 333211 1345666669999999999999999998876555 6788888888999999999875444
|
| >d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: GA bindinig protein (GABP) beta 1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.68 E-value=3.4e-09 Score=101.46 Aligned_cols=146 Identities=12% Similarity=0.054 Sum_probs=104.9
Q ss_pred cccccCCChhHHHHHhhhcccccCCCChhhhhcccccchhccccCCHhHHHhhcccccccccCCChhhHHHHHHHHhHhc
Q psy9003 384 HKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAG 463 (1276)
Q Consensus 384 ~~a~~~~~id~vkyLi~~~h~~~~~~~~~~~~~~vt~lh~a~~~~~~~~~~yli~~~~~~~~~~~~e~l~~l~~~~~~~~ 463 (1276)
+.|+..|++|+|++|++.. .+++.+..+. ||||.|+..++.+.+++++....+.....+...
T Consensus 7 ~~Aa~~g~~~~v~~LL~~g--a~~~~~~~g~----t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 68 (153)
T d1awcb_ 7 LEAARAGQDDEVRILMANG--APFTTDWLGT----SPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDR------------ 68 (153)
T ss_dssp HHHHHHTCHHHHHHHHHHT--CCCCCCTTCC----CHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCC------------
T ss_pred HHHHHCCCHHHHHHHHHcC--CCcccccCCC----ccccccccccccccccccccccccccccccccc------------
Confidence 3455568899999998753 4566777788 999999999999999998888777766544322
Q ss_pred cCCChhhHHHhhhhhcccccCCChhhhhhhhhhhhhhccCCCHHHHHHHhhhhcccccCCCHHHHHHHHhhhhhcCCCCC
Q psy9003 464 LFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGT 543 (1276)
Q Consensus 464 ~~~~~~~~~~~v~~~~~a~~~~~~e~~~~lv~~~~~~~~~~~~~~~~~~~t~~~~a~~~g~~e~~~~lv~~~~~~~~~~t 543 (1276)
+..+.+..+.+.+.+++|.....+++.... ...|+.+.|+.+|+++++++|++.+.++|.-+.
T Consensus 69 ------------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-----~g~T~L~~A~~~g~~~iv~~ll~~gad~~~~d~ 131 (153)
T d1awcb_ 69 ------------TPLHMAASEGHANIVEVLLKHGADVNAKDM-----LKMTALHWATEHNHQEVVELLIKYGADVHTQSK 131 (153)
T ss_dssp ------------CHHHHHHHHTCHHHHHHHHTTTCCTTCCCT-----TSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT
T ss_pred ------------cccccccccccceeeecccccCCccccccc-----cCchHHHhhhhcchhheeeeccccccCCcccCC
Confidence 233444445556666666666555554443 346788889999999999999998888876555
Q ss_pred cchhhhhhhhhhccccCCCHHHHHHH
Q psy9003 544 PEQLKYLVDECHKAGLFGTPEQLKYL 569 (1276)
Q Consensus 544 ~~~l~~~~~~~~~~~~~~~~e~~~~l 569 (1276)
+.-|..+-|...|+.|.+++|
T Consensus 132 -----~g~Tpl~~A~~~g~~eiv~lL 152 (153)
T d1awcb_ 132 -----FCKTAFDISIDNGNEDLAEIL 152 (153)
T ss_dssp -----TSCCHHHHHHHTTCHHHHHHH
T ss_pred -----CCCCHHHHHHHcCCHHHHHhC
Confidence 555666666688999988876
|
| >d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: bcl-3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.68 E-value=7.6e-09 Score=101.24 Aligned_cols=49 Identities=16% Similarity=0.088 Sum_probs=33.5
Q ss_pred CCChhHHHHHhh---hcccccCCCChhhhhcccccchhccccCCHhHHHhhccccc
Q psy9003 389 FGTPEQLKYLVD---ECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECH 441 (1276)
Q Consensus 389 ~~~id~vkyLi~---~~h~~~~~~~~~~~~~~vt~lh~a~~~~~~~~~~yli~~~~ 441 (1276)
+|++|+|++||+ ++.+++-..+..+. ||||.|+..|+.++|++||+.+.
T Consensus 13 ~g~~~~v~~Ll~~~~~~g~~in~~d~~g~----TpL~~A~~~~~~~iv~~Ll~~ga 64 (228)
T d1k1aa_ 13 QGNLPAVHRLVNLFQQGGRELDIYNNLRQ----TPLHLAVITTLPSVVRLLVTAGA 64 (228)
T ss_dssp TTCHHHHHHHHHHHHHTTCCSCCCCTTSC----CHHHHHHHTTCHHHHHHHHHTTC
T ss_pred cCCHHHHHHHHHHHHHCCCCCCccCCCCC----ccceehhcccccccccccccccc
Confidence 455555555554 23334434456677 99999999999999999987654
|
| >d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: I-kappa-B-alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.68 E-value=2.9e-09 Score=108.79 Aligned_cols=193 Identities=12% Similarity=-0.050 Sum_probs=120.9
Q ss_pred hhhcccccCCCHHHHHHHhhhhh--ccCCCCcccchhhhhccccccccCCChhhhHHhhhhhccccC-CCChhhHHHHHh
Q psy9003 305 DECHKAGLFGTPEQLKYLVDECH--KAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGL-FGTPEQLKYLVD 381 (1276)
Q Consensus 305 ~~~~~a~~~gsi~~l~~Lv~~~~--~~~~~~~~~~~~~~~~~~~~a~~~g~ie~~~yLi~~~h~~~~-~~~~e~~~~~~~ 381 (1276)
|.+|.|+..|+.+.+++|++.-. .+.+|..|.. ..|+.|.|+..|+.++++||++..-.++. +.......+..
T Consensus 4 t~Lh~A~~~g~~~~~~~li~~~~~~~~~in~~d~~---g~TpLh~A~~~~~~~iv~~L~~~g~d~~~~d~~g~t~l~~~- 79 (221)
T d1iknd_ 4 SFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNL---QQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLA- 79 (221)
T ss_dssp CTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTT---CCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCHHHHH-
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHhCCCCcccCCCC---CCccccccccccccccccccccccccccccccccccccccc-
Confidence 34466777888777776665432 2224433322 34777888888999999999886533332 22222222222
Q ss_pred hhcccccCCChhHHHHHhhhccccc-----CCCChhhhhcccccchhccccCCHhHHHhhcccccccccCCChhhHHHHH
Q psy9003 382 ECHKAGLFGTPEQLKYLVDECHKAG-----LFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLV 456 (1276)
Q Consensus 382 ~~~~a~~~~~id~vkyLi~~~h~~~-----~~~~~~~~~~~vt~lh~a~~~~~~~~~~yli~~~~~~~~~~~~e~l~~l~ 456 (1276)
+..|+.+++++|+..+.... ......+. |+||.|+..++++.+++|+..+.....+.+.+.
T Consensus 80 -----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~----t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~G----- 145 (221)
T d1iknd_ 80 -----CEQGCLASVGVLTQSCTTPHLHSILKATNYNGH----TCLHLASIHGYLGIVELLVSLGADVNAQEPCNG----- 145 (221)
T ss_dssp -----HHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCC----CHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTC-----
T ss_pred -----cccccccccchhhhhcccccccccccccccccc----hhhhHHhhcCChhheeeecccCcccccccccCC-----
Confidence 22467888888886543222 22222344 889999888888888888766544443333222
Q ss_pred HHHhHhccCCChhhHHHhhhhhcccccCCChhhhhhhhhhhhhhccCCCHHHHHHHhhhhcccccCCCHHHHHHHHhhhh
Q psy9003 457 DECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECH 536 (1276)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~v~~~~~a~~~~~~e~~~~lv~~~~~~~~~~~~~~~~~~~t~~~~a~~~g~~e~~~~lv~~~~ 536 (1276)
.|..|.|...|..|.+++|++.+.+++.+.. ...|+.+.|+..++.+++++|.....
T Consensus 146 ------------------~T~L~~A~~~g~~~~v~~Ll~~gad~~~~~~-----~G~tpl~~A~~~~~~~~~~~l~~~~~ 202 (221)
T d1iknd_ 146 ------------------RTALHLAVDLQNPDLVSLLLKCGADVNRVTY-----QGYSPYQLTWGRPSTRIQQQLGQLTL 202 (221)
T ss_dssp ------------------CCHHHHHHHTTCHHHHHHHHTTTCCSCCCCT-----TCCCGGGGCTTSSCHHHHHHHHTTSC
T ss_pred ------------------CCccccccccccHHHHHHHHhcCCcccccCC-----CCCCHHHHHHHCCCHHHHHHHHHcCC
Confidence 3567777777888888888877777776654 45678888888888888888887766
Q ss_pred hc
Q psy9003 537 KA 538 (1276)
Q Consensus 537 ~~ 538 (1276)
+.
T Consensus 203 ~~ 204 (221)
T d1iknd_ 203 EN 204 (221)
T ss_dssp GG
T ss_pred cc
Confidence 53
|
| >d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: GA bindinig protein (GABP) beta 1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.64 E-value=1.3e-08 Score=97.30 Aligned_cols=144 Identities=13% Similarity=-0.008 Sum_probs=102.0
Q ss_pred ccccCCChHHHHHHHhhhhccCCCCCccccchhhhhhcccccCCCHHHHHHHhhhhhccCCCCcccchhhhhcccccccc
Q psy9003 271 KAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGL 350 (1276)
Q Consensus 271 ~~~~~~~ie~~~yli~e~~~~~~~~~~~~~t~~~~~~~~a~~~gsi~~l~~Lv~~~~~~~~~~~~~~~~~~~~~~~~a~~ 350 (1276)
.|.+.|++|+|++|++ +.++...+..|.| ++|.|...++.+.+++++...+..+..... ..+..+.++.
T Consensus 8 ~Aa~~g~~~~v~~LL~--~ga~~~~~~~g~t----~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~ 76 (153)
T d1awcb_ 8 EAARAGQDDEVRILMA--NGAPFTTDWLGTS----PLHLAAQYGHFSTTEVLLRAGVSRDARTKV-----DRTPLHMAAS 76 (153)
T ss_dssp HHHHHTCHHHHHHHHH--HTCCCCCCTTCCC----HHHHHHHHTCHHHHHHHHTTTCCTTCCCTT-----CCCHHHHHHH
T ss_pred HHHHCCCHHHHHHHHH--cCCCcccccCCCc----cccccccccccccccccccccccccccccc-----cccccccccc
Confidence 4555688888888888 3455555555554 556677799999999999887766643332 1244556777
Q ss_pred CCChhhhHHhhhhhccccC-CCChhhHHHHHhhhcccccCCChhHHHHHhhhcccccCCCChhhhhcccccchhccccCC
Q psy9003 351 FGTPEQLKYLVDECHKAGL-FGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGT 429 (1276)
Q Consensus 351 ~g~ie~~~yLi~~~h~~~~-~~~~e~~~~~~~~~~~a~~~~~id~vkyLi~~~h~~~~~~~~~~~~~~vt~lh~a~~~~~ 429 (1276)
..+.+++++|+...-..+. +....+. .+-|..+|+.++|++|+. .-+++-..+..|. ||||.|+.+|+
T Consensus 77 ~~~~~~~~~l~~~~~~~~~~~~~g~T~------L~~A~~~g~~~iv~~ll~-~gad~~~~d~~g~----Tpl~~A~~~g~ 145 (153)
T d1awcb_ 77 EGHANIVEVLLKHGADVNAKDMLKMTA------LHWATEHNHQEVVELLIK-YGADVHTQSKFCK----TAFDISIDNGN 145 (153)
T ss_dssp HTCHHHHHHHHTTTCCTTCCCTTSCCH------HHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSC----CHHHHHHHTTC
T ss_pred cccceeeecccccCCccccccccCchH------HHhhhhcchhheeeeccc-cccCCcccCCCCC----CHHHHHHHcCC
Confidence 8899999999876544432 2222211 222334799999999984 4678877888888 99999999999
Q ss_pred HhHHHhh
Q psy9003 430 PEQLKYL 436 (1276)
Q Consensus 430 ~~~~~yl 436 (1276)
.|++|+|
T Consensus 146 ~eiv~lL 152 (153)
T d1awcb_ 146 EDLAEIL 152 (153)
T ss_dssp HHHHHHH
T ss_pred HHHHHhC
Confidence 9999986
|
| >d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: bcl-3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.63 E-value=1.4e-08 Score=99.26 Aligned_cols=220 Identities=15% Similarity=-0.019 Sum_probs=108.0
Q ss_pred hhhhcccccCCCHHHHHHHhhhhhc--cCCCCcccchhhhhccccccccCCChhhhHHhhhhhccccC-CCChhhHHHHH
Q psy9003 304 VDECHKAGLFGTPEQLKYLVDECHK--AGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGL-FGTPEQLKYLV 380 (1276)
Q Consensus 304 ~~~~~~a~~~gsi~~l~~Lv~~~~~--~~~~~~~~~~~~~~~~~~~a~~~g~ie~~~yLi~~~h~~~~-~~~~e~~~~~~ 380 (1276)
.|++|.|+.+|++|.+++||+..-+ ++++..+. ...|+.+.|+..|++|++++|++.....+. ..........
T Consensus 4 ~TpLh~A~~~g~~~~v~~Ll~~~~~~g~~in~~d~---~g~TpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~- 79 (228)
T d1k1aa_ 4 DTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNN---LRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHL- 79 (228)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCT---TSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHH-
T ss_pred ccHHHHHHHcCCHHHHHHHHHHHHHCCCCCCccCC---CCCccceehhccccccccccccccccccccccccccccccc-
Confidence 3455667778999999988875432 23443332 224666788888888888888876554432 1111111111
Q ss_pred hhhcccccCCChhHHHHHhhhcccccCCCChhhhhcccccchhccccCCHhHHHhhcccccccccCCChhhHHHHHHHHh
Q psy9003 381 DECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECH 460 (1276)
Q Consensus 381 ~~~~~a~~~~~id~vkyLi~~~h~~~~~~~~~~~~~~vt~lh~a~~~~~~~~~~yli~~~~~~~~~~~~e~l~~l~~~~~ 460 (1276)
+...++.+.++++............ .......++||.+.........++|+..............
T Consensus 80 -----a~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~--------- 144 (228)
T d1k1aa_ 80 -----ACEHRSPTCLRALLDSAAPGTLDLE-ARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSG--------- 144 (228)
T ss_dssp -----HHHTTCHHHHHHHHHHSCTTSCCTT-CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTC---------
T ss_pred -----ccccccccchhhhhhcccccccccc-ccccccccccccccccccchhhhhhhccccccccccccch---------
Confidence 1123566777666543322111111 1111223566666655555555554433222111111111
Q ss_pred HhccCCChhhHHHhhhhhcccccCCChhhhhhhhhhhhhhccCCCHHHHHHHhhhhcccccCCCHHHHHHHHhhhhhcCC
Q psy9003 461 KAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGL 540 (1276)
Q Consensus 461 ~~~~~~~~~~~~~~v~~~~~a~~~~~~e~~~~lv~~~~~~~~~~~~~~~~~~~t~~~~a~~~g~~e~~~~lv~~~~~~~~ 540 (1276)
.+..+.|...+..+.+++++.....++.+.. ...|..+.|+..|+.|++++|++.++++|+
T Consensus 145 --------------~~~l~~a~~~~~~~~~~~~~~~~~~~~~~d~-----~g~t~L~~A~~~g~~~~v~~Ll~~Gad~n~ 205 (228)
T d1k1aa_ 145 --------------RSPLIHAVENNSLSMVQLLLQHGANVNAQMY-----SGSSALHSASGRGLLPLVRTLVRSGADSSL 205 (228)
T ss_dssp --------------CCHHHHHHHTTCHHHHHHHHHTTCCTTCBCT-----TSCBHHHHHHHHTCHHHHHHHHHTTCCTTC
T ss_pred --------------hhHHHHHHHhhhhhhhhhhhhhccccccccc-----cCcchHHHHHHcCCHHHHHHHHHCCCCCCC
Confidence 1233334444445555555554444444332 224555666666667777777766666554
Q ss_pred CCCcchhhhhhhhhhccccCCCHHHH
Q psy9003 541 FGTPEQLKYLVDECHKAGLFGTPEQL 566 (1276)
Q Consensus 541 ~~t~~~l~~~~~~~~~~~~~~~~e~~ 566 (1276)
-+. ..-|..+.|...|.+|.|
T Consensus 206 ~d~-----~G~TpL~~A~~~~~~div 226 (228)
T d1k1aa_ 206 KNC-----HNDTPLMVARSRRVIDIL 226 (228)
T ss_dssp CCT-----TSCCTTTTCSSHHHHHHH
T ss_pred CCC-----CCCCHHHHHHhCCCcccc
Confidence 333 222333334455554444
|
| >d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: Cell cycle inhibitor p16ink4A species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.53 E-value=1.8e-08 Score=95.48 Aligned_cols=46 Identities=15% Similarity=-0.018 Sum_probs=37.9
Q ss_pred CCChhHHHHHhhhcccccCCCChhhhhcccccchhccccCCHhHHHhhccc
Q psy9003 389 FGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDE 439 (1276)
Q Consensus 389 ~~~id~vkyLi~~~h~~~~~~~~~~~~~~vt~lh~a~~~~~~~~~~yli~~ 439 (1276)
.|+.|+|++|+.. .+++-..+.+|. ||||.|+.+|+.|+++||++.
T Consensus 79 ~g~~~~v~~Ll~~-ga~~~~~d~~G~----T~l~~A~~~g~~~~v~~Llsa 124 (125)
T d1bi7b_ 79 EGFLDTLVVLHRA-GARLDVRDAWGR----LPVDLAEELGHRDVARYLRAA 124 (125)
T ss_dssp HTCHHHHHHHHHH-TCCSSCCCTTCC----CHHHHHHHHTCHHHHHHHSSC
T ss_pred ccccccccccccc-ccccccccCCCC----CHHHHHHHcCCHHHHHHHHhc
Confidence 4788888888875 355556677888 999999999999999999864
|
| >d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: Cell cycle inhibitor p19ink4D species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.50 E-value=2.9e-08 Score=96.27 Aligned_cols=147 Identities=14% Similarity=0.018 Sum_probs=98.9
Q ss_pred ccccCCChhHHHHHhhhcccccCCCChhhhhcccccchhccccCCHhHHHhhcccccccccCCChhhHHHHHHHHhHhcc
Q psy9003 385 KAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGL 464 (1276)
Q Consensus 385 ~a~~~~~id~vkyLi~~~h~~~~~~~~~~~~~~vt~lh~a~~~~~~~~~~yli~~~~~~~~~~~~e~l~~l~~~~~~~~~ 464 (1276)
.|..+|++|+||+|+....+++-..+..+. ||||.|+ .++.+++++|+.........
T Consensus 8 ~Aa~~g~~~~vk~lL~~~~~~~n~~d~~g~----t~L~~A~-~~~~~~v~~Ll~~~~~~~~~------------------ 64 (156)
T d1bd8a_ 8 GAAARGDVQEVRRLLHRELVHPDALNRFGK----TALQVMM-FGSTAIALELLKQGASPNVQ------------------ 64 (156)
T ss_dssp HHHHHTCHHHHHHHHHTTCCCTTCCCTTSC----CHHHHSC-TTCHHHHHHHHHTTCCTTCC------------------
T ss_pred HHHHcCCHHHHHHHHHhCCCCCCccCCCCC----ccccccc-cccccccccccccccccccc------------------
Confidence 444569999999999888888877788888 9999886 58899999998654321111
Q ss_pred CCChhhHHHhhhhhcccccCCChhhhhhhhhhhhhhccCCCHHHHHHHhhhhcccccCCCHHHHHHHHhhhhhcCCCCCc
Q psy9003 465 FGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTP 544 (1276)
Q Consensus 465 ~~~~~~~~~~v~~~~~a~~~~~~e~~~~lv~~~~~~~~~~~~~~~~~~~t~~~~a~~~g~~e~~~~lv~~~~~~~~~~t~ 544 (1276)
+... .+..+.+...++++.++++++....+|.... .-.|+.+.|+..|+.+++++|+. .+++++.+.
T Consensus 65 -~~~~-----~~~l~~~~~~~~~~~~~~~l~~~~~~n~~~~-----~~~t~L~~A~~~~~~~i~~~L~~-~~~~~~~d~- 131 (156)
T d1bd8a_ 65 -DTSG-----TSPVHDAARTGFLDTLKVLVEHGADVNVPDG-----TGALPIHLAVQEGHTAVVSFLAA-ESDLHRRDA- 131 (156)
T ss_dssp -CTTS-----CCHHHHHHHTTCHHHHHHHHHTTCCSCCCCT-----TSCCHHHHHHHHTCHHHHHHHHT-TSCTTCCCT-
T ss_pred -cccc-----ccccccccccccccccccccccccccccccC-----CCCeeeccccccccccccccccc-cccccccCC-
Confidence 1111 2334555666677777777776665554332 34677788888888888888873 444543333
Q ss_pred chhhhhhhhhhccccCCCHHHHHHHHH
Q psy9003 545 EQLKYLVDECHKAGLFGTPEQLKYLVD 571 (1276)
Q Consensus 545 ~~l~~~~~~~~~~~~~~~~e~~~~l~~ 571 (1276)
+.-|..+.|...|+.|-+++|.+
T Consensus 132 ----~G~TpL~~A~~~g~~~iv~~Ll~ 154 (156)
T d1bd8a_ 132 ----RGLTPLELALQRGAQDLVDILQG 154 (156)
T ss_dssp ----TSCCHHHHHHHSCCHHHHHHHHT
T ss_pred ----CCCCHHHHHHHcCCHHHHHHHHh
Confidence 33455566668888888888875
|
| >d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: p18ink4C(ink6) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.48 E-value=4.4e-08 Score=93.89 Aligned_cols=119 Identities=18% Similarity=0.111 Sum_probs=50.5
Q ss_pred hcccccCCChhhhhhhhhhhhhhccCCCHHHHHHHhhhhcccccCCCHHHHHHHHhhhhhcCCCCCcchhhhhhhhhhcc
Q psy9003 478 CHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKA 557 (1276)
Q Consensus 478 ~~~a~~~~~~e~~~~lv~~~~~~~~~~~~~~~~~~~t~~~~a~~~g~~e~~~~lv~~~~~~~~~~t~~~l~~~~~~~~~~ 557 (1276)
.|.|..+|++|.+++|++...++|.... ...|+.+.|. .|++|++++|++..++++.-+. ...+..+.+
T Consensus 5 Lh~Aa~~g~~~~v~~Ll~~g~d~n~~d~-----~g~TpL~~A~-~~~~ei~~~Ll~~~a~~~~~~~-----~~~~~l~~~ 73 (156)
T d1ihba_ 5 LASAAARGDLEQLTSLLQNNVNVNAQNG-----FGRTALQVMK-LGNPEIARRLLLRGANPDLKDR-----TGFAVIHDA 73 (156)
T ss_dssp HHHHHHHTCHHHHHHHTTSCCCTTCCCT-----TSCCHHHHCC-SSCHHHHHHHHHTTCCTTCCCT-----TSCCHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHCCCCcCccCC-----cccccccccc-cccccccccccccccccccccc-----cCccccccc
Confidence 4445555555555555554444443332 2234444332 4555555555554444332222 122223333
Q ss_pred ccCCCHHHHHHHHHhhhhccCCCChhhhhhhhhhhcccccCCCHHHHHHHHhhhh
Q psy9003 558 GLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECH 612 (1276)
Q Consensus 558 ~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~ 612 (1276)
...+..+.++.|...+.+++...... ++..+.|...|+.|.+++|++.++
T Consensus 74 ~~~~~~~~~~~l~~~~~~~~~~~~~~-----~~~l~~a~~~~~~~~~~~Ll~~~~ 123 (156)
T d1ihba_ 74 ARAGFLDTLQTLLEFQADVNIEDNEG-----NLPLHLAAKEGHLRVVEFLVKHTA 123 (156)
T ss_dssp HHHTCHHHHHHHHHTTCCTTCCCTTS-----CCHHHHHHHTTCHHHHHHHHHHSC
T ss_pred cccccccccccccccccccccccccc-----cccccccccccccccccccccccc
Confidence 34455555555544444443211111 222333334455555555554443
|
| >d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: 53BP2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.41 E-value=8e-08 Score=91.72 Aligned_cols=128 Identities=16% Similarity=0.085 Sum_probs=90.4
Q ss_pred hhhcccccCCCHHHHHHHHhhhhhcCCCCCcchhhhhhhhhhccccCCCHHHHHHHHHhhhhccCCCChhhhhhhhhhhc
Q psy9003 514 DECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECH 593 (1276)
Q Consensus 514 t~~~~a~~~g~~e~~~~lv~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 593 (1276)
+....|+..|++|++++|++.+.++|+-+. ..-|..+.|+..|..+-+++|++.++++|....+- .|..+
T Consensus 3 ~lL~~A~~~G~~~~v~~Ll~~g~d~n~~d~-----~g~t~Lh~A~~~~~~~~~~~ll~~g~~~~~~d~~g-----~tpLh 72 (130)
T d1ycsb1 3 ALLLDSSLEGEFDLVQRIIYEVDDPSLPND-----EGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDG-----WTPLH 72 (130)
T ss_dssp HHHHHHHHHTCHHHHHHHTSTTSSCCCCCT-----TSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTC-----CCHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHcCCCcccccc-----ccccccccccccccccccccccccccccccccccC-----ccccc
Confidence 345678889999999999998888875554 33455566668889999999999888887433322 55666
Q ss_pred ccccCCCHHHHHHHHhhhhhccCCCChhhhhhhHHHhhhccCCCCHHHHHHHHHHHHhhc
Q psy9003 594 KAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAG 653 (1276)
Q Consensus 594 ~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 653 (1276)
-|..+|++|.+++|++.++++|..-+.. .......+.+...|..|.+++|.++..+.|
T Consensus 73 ~A~~~g~~~~v~~Ll~~ga~v~~~~~~~--~~~~~~~~~a~~~g~~eiv~~L~~~~~~lG 130 (130)
T d1ycsb1 73 CAASCNNVQVCKFLVESGAAVFAMTYSD--MQTAADKCEEMEEGYTQCSQFLYGVQEKMG 130 (130)
T ss_dssp HHHHTTCHHHHHHHHHTTCCTTCCCSSS--CCCHHHHCCSSSTTCCCHHHHHHHHHHHTT
T ss_pred ccchhhHHHHHHHHHHcCCCcccccCCC--CCCHHHHHHHHHcChHHHHHHHHhHHHhCC
Confidence 6668899999999999988887543321 111223344555688888888888777654
|
| >d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: Neurogenic locus notch receptor domain species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.41 E-value=1.1e-07 Score=94.86 Aligned_cols=206 Identities=13% Similarity=-0.022 Sum_probs=98.3
Q ss_pred ChHHHHHHHhhhhccCCCCCccccchhhhhhcccccCCCHHHHHHHhhhhhccCCCCcccchhhhhccccccccCCChhh
Q psy9003 277 TPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQ 356 (1276)
Q Consensus 277 ~ie~~~yli~e~~~~~~~~~~~~~t~~~~~~~~a~~~gsi~~l~~Lv~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~ie~ 356 (1276)
+-|+||+||+.. +|... .....+.|++|-|+..|+.|++++|++...+++..+.. -.+..+.++..++.+.
T Consensus 1 ~~~~v~~Ll~~g-~din~---~~d~~G~t~L~~A~~~g~~e~v~~Ll~~g~~~n~~~~~-----~~~~~~~~~~~~~~~~ 71 (209)
T d1ot8a_ 1 TAQVISDLLAQG-AELNA---TMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNT-----GRTPLHAAVAADAMGV 71 (209)
T ss_dssp CHHHHHHHHHHH-HHHHH---HHHHHCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT-----SCCHHHHHHHTTCHHH
T ss_pred CHHHHHHHHHCC-CCcCc---CcCCCCCCHHHHHHHcCCHHHHHHHHhhcccccccccc-----cccccccccccccccc
Confidence 357777777732 33211 12245567777777777777777777665544422110 0111222222333333
Q ss_pred hHHhhhhhccccCCCCh--hhHHHHHhhhcccccCCChhHHHHHhhhcccccCCCChhhhhcccccchhccccCCHhHHH
Q psy9003 357 LKYLVDECHKAGLFGTP--EQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLK 434 (1276)
Q Consensus 357 ~~yLi~~~h~~~~~~~~--e~~~~~~~~~~~a~~~~~id~vkyLi~~~h~~~~~~~~~~~~~~vt~lh~a~~~~~~~~~~ 434 (1276)
........-........ ....... .......+.+.|+. ..++....+..+. |+||.|+.++..++++
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~L~~-~~~~~~~~~~~~~----t~l~~~~~~~~~~~~~ 140 (209)
T d1ot8a_ 72 FQILLRNRATNLNARMHDGTTPLILA------ARLAIEGMVEDLIT-ADADINAADNSGK----TALHWAAAVNNTEAVN 140 (209)
T ss_dssp HHHHHTCTTCCTTCCCTTCCCHHHHH------HHTTCTTHHHHHHH-TTCCTTCBCTTSC----BHHHHHHHTTCHHHHH
T ss_pred cccccccccccccccccccccccccc------ccccchhhhhhhhh-hcccccccCCCCC----CcchhhcccCcceeee
Confidence 32222211111100000 0000000 01234444444443 3444444555555 6777777767777766
Q ss_pred hhcccccccccCCChhhHHHHHHHHhHhccCCChhhHHHhhhhhcccccCCChhhhhhhhhhhhhhccCCCHHHHHHHhh
Q psy9003 435 YLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVD 514 (1276)
Q Consensus 435 yli~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~~~~~~~v~~~~~a~~~~~~e~~~~lv~~~~~~~~~~~~~~~~~~~t 514 (1276)
+++..+....... ... -|..|.|..+|..|.+++|++.++++|.+.. ...|
T Consensus 141 ~l~~~~~~~~~~d-------------------~~g-----~TpL~~A~~~g~~~~v~~Ll~~gad~n~~d~-----~g~T 191 (209)
T d1ot8a_ 141 ILLMHHANRDAQD-------------------DKD-----ETPLFLAAREGSYEASKALLDNFANREITDH-----MDRL 191 (209)
T ss_dssp HHHHTTCCTTCCC-------------------TTC-----CCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT-----TSCC
T ss_pred eeccccccccccc-------------------ccc-----ccccchhccccHHHHHHHHHHCCCCCCCcCC-----CCCC
Confidence 6666554322211 111 3445666666666666666666655554443 3346
Q ss_pred hhcccccCCCHHHHHHH
Q psy9003 515 ECHKAGLFGTPEQLKYL 531 (1276)
Q Consensus 515 ~~~~a~~~g~~e~~~~l 531 (1276)
+.+.|+..|+.|++|||
T Consensus 192 pl~~A~~~~~~~iv~lL 208 (209)
T d1ot8a_ 192 PRDVASERLHHDIVRLL 208 (209)
T ss_dssp HHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHcCCHHHHhhc
Confidence 66666666666666665
|
| >d1bf2a1 b.1.18.2 (A:1-162) Isoamylase, N-terminal domain N {Pseudomonas amyloderamosa [TaxId: 32043]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: E set domains family: E-set domains of sugar-utilizing enzymes domain: Isoamylase, N-terminal domain N species: Pseudomonas amyloderamosa [TaxId: 32043]
Probab=98.35 E-value=3.6e-07 Score=91.70 Aligned_cols=57 Identities=12% Similarity=0.126 Sum_probs=49.8
Q ss_pred hccceEecCC-cEEEEEEccCCceEEEEeeccCCCcc--------e------EEEEEcc-------CccccceEEEEEec
Q psy9003 64 KYGIHVQADN-SVRCFEWAPSAQQLYLTGNVSLTPWS--------I------MEEASLS-------SIKLIQSIQYILTG 121 (1276)
Q Consensus 64 ~fGah~~~~g-g~~f~~wAP~A~~v~l~gdfn~~~w~--------m------~~~~~~~-------~~~~g~~yky~i~~ 121 (1276)
.|||+.+++| ||.|++|||+|++|.|+.-. ++++ | +|.+++| ++.+|..|.|||.+
T Consensus 6 ~LGa~~~~~g~~v~F~vwAp~A~~V~L~ly~--~~~~~~~~~~~~l~~~~~gvW~~~v~~~~~~~~g~~~G~~Y~yrv~G 83 (162)
T d1bf2a1 6 SLGASYDAQQANITFRVYSSQATRIVLYLYS--AGYGVQESATYTLSPAGSGVWAVTVPVSSIKAAGITGAVYYGYRAWG 83 (162)
T ss_dssp CCEEEECTTSSEEEEEEECSSCSEEEEEEES--SSSSCCCSEEEECEECSTTEEEEEEEHHHHHHTTCCSCCEEEEEEEB
T ss_pred CCccEEeCCCeeEEEEEECCCCCEEEEEEEc--CCCCCcceeEEEcccccccEEEEEecccccccccCCCCcEEEEEEcc
Confidence 4899999877 79999999999999999977 3343 3 9999998 79999999999987
Q ss_pred C
Q psy9003 122 V 122 (1276)
Q Consensus 122 ~ 122 (1276)
+
T Consensus 84 p 84 (162)
T d1bf2a1 84 P 84 (162)
T ss_dssp T
T ss_pred c
Confidence 5
|
| >d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: Cell cycle inhibitor p16ink4A species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.29 E-value=1.1e-07 Score=89.89 Aligned_cols=119 Identities=14% Similarity=0.101 Sum_probs=82.8
Q ss_pred hhhcccccCCCHHHHHHHHhhhhhcCCCCCcchhhhhhhhhhccccCCCHHHHHHHHHhhhhccCCCChhhhhhhh-hhh
Q psy9003 514 DECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLV-DEC 592 (1276)
Q Consensus 514 t~~~~a~~~g~~e~~~~lv~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~~~-~~~ 592 (1276)
+..+.|...|++|.+++|++.+.++|..+. +.-|-.+-| .+|+.|.+++|++.++++|...... . +..
T Consensus 5 ~~L~~Aa~~G~~~~v~~Ll~~gad~n~~~~-----~g~t~l~~a-~~g~~~~v~~Ll~~ga~~~~~~~~~-----~~~~L 73 (125)
T d1bi7b_ 5 DWLATAAARGRVEEVRALLEAGANPNAPNS-----YGRRPIQVM-MMGSARVAELLLLHGAEPNCADPAT-----LTRPV 73 (125)
T ss_dssp THHHHHHHHTCHHHHHHHHTTTCCTTCCCS-----SSCCTTTSS-CTTCHHHHHHHHTTTCCCCCCCTTT-----CCCHH
T ss_pred hHHHHHHHCCCHHHHHHHHHcCCccccccc-----ccccccccc-ccccccccccccccccccccccccc-----ccccc
Confidence 456778889999999999998887775444 223333333 4689999999999988888332221 1 233
Q ss_pred cccccCCCHHHHHHHHhhhhhccCCCChhhhhhhHHHhhhccCCCCHHHHHHHHHH
Q psy9003 593 HKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDE 648 (1276)
Q Consensus 593 ~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 648 (1276)
+-|...|+++.+++|++.++++|.+-..- .++++-|..+|+.|.+++|..+
T Consensus 74 ~~A~~~g~~~~v~~Ll~~ga~~~~~d~~G-----~T~l~~A~~~g~~~~v~~Llsa 124 (125)
T d1bi7b_ 74 HDAAREGFLDTLVVLHRAGARLDVRDAWG-----RLPVDLAEELGHRDVARYLRAA 124 (125)
T ss_dssp HHHHHHTCHHHHHHHHHHTCCSSCCCTTC-----CCHHHHHHHHTCHHHHHHHSSC
T ss_pred ccccccccccccccccccccccccccCCC-----CCHHHHHHHcCCHHHHHHHHhc
Confidence 44447889999999999988887664433 4566666667888888887653
|
| >d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: 53BP2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.26 E-value=2e-07 Score=88.84 Aligned_cols=126 Identities=17% Similarity=0.074 Sum_probs=100.9
Q ss_pred hhcccccCCChhhhhhhhhhhhhhccCCCHHHHHHHhhhhcccccCCCHHHHHHHHhhhhhcCCCCCcchhhhhhhhhhc
Q psy9003 477 ECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHK 556 (1276)
Q Consensus 477 ~~~~a~~~~~~e~~~~lv~~~~~~~~~~~~~~~~~~~t~~~~a~~~g~~e~~~~lv~~~~~~~~~~t~~~l~~~~~~~~~ 556 (1276)
..+.|...|..|.+++|++.+.++|.... ...|+.+.|+..|..+++++|+..++++|..+. ...|-.|.
T Consensus 4 lL~~A~~~G~~~~v~~Ll~~g~d~n~~d~-----~g~t~Lh~A~~~~~~~~~~~ll~~g~~~~~~d~-----~g~tpLh~ 73 (130)
T d1ycsb1 4 LLLDSSLEGEFDLVQRIIYEVDDPSLPND-----EGITALHNAVCAGHTEIVKFLVQFGVNVNAADS-----DGWTPLHC 73 (130)
T ss_dssp HHHHHHHHTCHHHHHHHTSTTSSCCCCCT-----TSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCT-----TCCCHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCcccccc-----ccccccccccccccccccccccccccccccccc-----cCcccccc
Confidence 45678889999999999999988886654 357889999999999999999999888886554 44566677
Q ss_pred cccCCCHHHHHHHHHhhhhcc-CCCChhhhhhhhhhhcccccCCCHHHHHHHHhhhhhcc
Q psy9003 557 AGLFGTPEQLKYLVDECHKAG-LFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAG 615 (1276)
Q Consensus 557 ~~~~~~~e~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~ 615 (1276)
|+..|++|.+++|++.++++| .+.++.. .....+.+..+|..|.+++|.+..+++|
T Consensus 74 A~~~g~~~~v~~Ll~~ga~v~~~~~~~~~---~~~~~~~a~~~g~~eiv~~L~~~~~~lG 130 (130)
T d1ycsb1 74 AASCNNVQVCKFLVESGAAVFAMTYSDMQ---TAADKCEEMEEGYTQCSQFLYGVQEKMG 130 (130)
T ss_dssp HHHTTCHHHHHHHHHTTCCTTCCCSSSCC---CHHHHCCSSSTTCCCHHHHHHHHHHHTT
T ss_pred cchhhHHHHHHHHHHcCCCcccccCCCCC---CHHHHHHHHHcChHHHHHHHHhHHHhCC
Confidence 779999999999999999998 3323221 1233456678899999999999988875
|
| >d1m7xa3 c.1.8.1 (A:227-622) 1,4-alpha-glucan branching enzyme, central domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: 1,4-alpha-glucan branching enzyme, central domain species: Escherichia coli [TaxId: 562]
Probab=98.15 E-value=6.2e-07 Score=96.77 Aligned_cols=46 Identities=33% Similarity=0.533 Sum_probs=43.7
Q ss_pred ccccccC---------CChHHHHHHHHHHHHhcCc------------------------------CCCHHHHHHHHHHHH
Q psy9003 135 ECHKAGL---------FGTPEQLKYLVDECHKAGL------------------------------FGTPEQLKYLVDECH 175 (1276)
Q Consensus 135 e~h~gs~---------~~y~e~a~~li~y~~~~~y------------------------------ygtp~~l~~~vd~~h 175 (1276)
|||.+|| =+|++|+++||||+|++|+ |||++||+.||++||
T Consensus 21 e~~~~~f~~~~~~~~~g~~~gi~~klidyl~~LGv~~iwl~Pi~~~~~~~~hGY~~~d~~~vdp~~Gt~~d~~~LV~~aH 100 (396)
T d1m7xa3 21 EVHLGSWRRHTDNNFWLSYRELADQLVPYAKWMGFTHLELLPINEHPFDGSWGYQPTGLYAPTRRFGTRDDFRYFIDAAH 100 (396)
T ss_dssp EECTTSSCBCTTTCCBCCHHHHHHHHHHHHHHTTCSEEEESCCEECSCGGGTTSSCSEEEEECGGGSCHHHHHHHHHHHH
T ss_pred EEccCccCCCCCCCCCCCHHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCcCcCcCCCcCcccCCHHHHHHHHHHHh
Confidence 9999997 3499999999999999999 999999999999999
Q ss_pred HcCCC
Q psy9003 176 KAGLF 180 (1276)
Q Consensus 176 ~~~i~ 180 (1276)
+.||+
T Consensus 101 ~~gi~ 105 (396)
T d1m7xa3 101 AAGLN 105 (396)
T ss_dssp HTTCE
T ss_pred hhhhh
Confidence 99998
|
| >d1g94a2 c.1.8.1 (A:1-354) Bacterial alpha-amylase {Pseudoalteromonas haloplanktis (Alteromonas haloplanktis) [TaxId: 228]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Bacterial alpha-amylase species: Pseudoalteromonas haloplanktis (Alteromonas haloplanktis) [TaxId: 228]
Probab=98.02 E-value=1.2e-06 Score=95.88 Aligned_cols=44 Identities=18% Similarity=0.153 Sum_probs=42.6
Q ss_pred cccccCCChHHHHHHHHHHHHhcCc-------------------------------CCCHHHHHHHHHHHHHcCCC
Q psy9003 136 CHKAGLFGTPEQLKYLVDECHKAGL-------------------------------FGTPEQLKYLVDECHKAGLF 180 (1276)
Q Consensus 136 ~h~gs~~~y~e~a~~li~y~~~~~y-------------------------------ygtp~~l~~~vd~~h~~~i~ 180 (1276)
||+++| +|++||+++.+|+|++|| |||++||+.||++||++||+
T Consensus 6 ~~~f~w-~~~~i~~~~~dyl~~lG~tai~l~P~~~~~~~~~~y~gY~~~dy~vd~~~Gt~~dfk~LV~~aH~~GI~ 80 (354)
T d1g94a2 6 VHLFEW-NWQDVAQECEQYLGPKGYAAVQVSPPNEHITGSQWWTRYQPVSYELQSRGGNRAQFIDMVNRCSAAGVD 80 (354)
T ss_dssp EEETTC-CHHHHHHHHHHTHHHHTCCEEEECCCSCBBCSSSGGGGGSBSCSCSCBTTBCHHHHHHHHHHHHHTTCE
T ss_pred EEcccC-CHHHHHHHHHHHHHHcCCCEEEeCcCccCCCCCCCcccCCCCcceeCCCCCCHHHHHHHHHHHhccCce
Confidence 799999 799999999999999999 89999999999999999999
|
| >d1jaea2 c.1.8.1 (A:1-378) Animal alpha-amylase {Yellow mealworm (Tenebrio molitor), larva [TaxId: 7067]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Animal alpha-amylase species: Yellow mealworm (Tenebrio molitor), larva [TaxId: 7067]
Probab=97.95 E-value=1.1e-06 Score=97.05 Aligned_cols=44 Identities=14% Similarity=0.140 Sum_probs=43.0
Q ss_pred cccccCCChHHHHHHHHHHHHhcCc---------------------------------CCCHHHHHHHHHHHHHcCCC
Q psy9003 136 CHKAGLFGTPEQLKYLVDECHKAGL---------------------------------FGTPEQLKYLVDECHKAGLF 180 (1276)
Q Consensus 136 ~h~gs~~~y~e~a~~li~y~~~~~y---------------------------------ygtp~~l~~~vd~~h~~~i~ 180 (1276)
+|+..| +|++||++|.+|||+||| |||++||+.||++||++||+
T Consensus 14 ~~~f~W-~~~~i~~~~~~yl~~lG~tai~l~P~~e~~~~~~~~~~~~Y~~~dY~id~~~Gt~~df~~LV~~aH~~GI~ 90 (378)
T d1jaea2 14 VHLFEW-KWNDIADECERFLQPQGFGGVQISPPNEYLVADGRPWWERYQPVSYIINTRSGDESAFTDMTRRCNDAGVR 90 (378)
T ss_dssp EEETTC-CHHHHHHHHHHTTTTTTEEEEECCCCSCBBCCTTCCGGGGGSBCCSCSEETTEEHHHHHHHHHHHHHTTCE
T ss_pred EEeccC-cHHHHHHHHHHHHHHhCCCEEEeCcccccCCCCCCCCccccCCccceeCCCCCCHHHHHHHHHHHHhcCce
Confidence 899999 899999999999999999 99999999999999999999
|
| >d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: Myotrophin species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.95 E-value=9.7e-07 Score=82.62 Aligned_cols=97 Identities=16% Similarity=0.029 Sum_probs=75.1
Q ss_pred ccchhccccCCHhHHHhhcccccccccCCChhhHHHHHHHHhHhccCCChhhHHHhhhhhcccccCCChhhhhhhhhhhh
Q psy9003 419 DECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECH 498 (1276)
Q Consensus 419 t~lh~a~~~~~~~~~~yli~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~~~~~~~v~~~~~a~~~~~~e~~~~lv~~~~ 498 (1276)
|||..|+++|+.++|++||+.+ +++...+.. . .|..|.|..+|..|.+++|++...
T Consensus 4 tpL~~A~~~g~~~~v~~Ll~~g-~d~n~~~~~------------------g-----~t~lh~A~~~~~~~~~~~ll~~g~ 59 (118)
T d1myoa_ 4 KEFMWALKNGDLDEVKDYVAKG-EDVNRTLEG------------------G-----RKPLHYAADCGQLEILEFLLLKGA 59 (118)
T ss_dssp HHHHHHHHTTCHHHHHHHHTTT-CCCCCCSSS------------------S-----CCTTHHHHHHSTTTHHHHHHHSSC
T ss_pred hHHHHHHHCCCHHHHHHHHHhh-hcccccccc------------------c-----cccccccccccccccccccccccc
Confidence 7899999999999999999764 333222222 2 577788888888899999998888
Q ss_pred hhccCCCHHHHHHHhhhhcccccCCCHHHHHHHHhhhhhcCCCCCc
Q psy9003 499 KAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTP 544 (1276)
Q Consensus 499 ~~~~~~~~~~~~~~~t~~~~a~~~g~~e~~~~lv~~~~~~~~~~t~ 544 (1276)
++|.... ...|+.+.|+..|+.|++++|++.+++++.-+.+
T Consensus 60 din~~d~-----~g~tpLh~A~~~~~~~~v~~Ll~~Gad~~~~d~~ 100 (118)
T d1myoa_ 60 DINAPDK-----HHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPD 100 (118)
T ss_dssp TTTCCSS-----SCSCHHHHHHTTTCCHHHHHHHTTCCCSSSSSSS
T ss_pred eeeeccc-----ccccchhhhhhcCchhhhhhhhcccccceeeCCC
Confidence 8876654 4578889999999999999999988888755443
|
| >d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: Pyk2-associated protein beta species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.68 E-value=2.2e-05 Score=77.23 Aligned_cols=122 Identities=13% Similarity=-0.052 Sum_probs=80.3
Q ss_pred hhhcccccCCCHHHHHHHhhhhhccC----CCCcccchhhhhcccccccc---CCChhhhHHhhhhhccccC-CCChhhH
Q psy9003 305 DECHKAGLFGTPEQLKYLVDECHKAG----LFGTPEQLKYLVDECHKAGL---FGTPEQLKYLVDECHKAGL-FGTPEQL 376 (1276)
Q Consensus 305 ~~~~~a~~~gsi~~l~~Lv~~~~~~~----~~~~~~~~~~~~~~~~~a~~---~g~ie~~~yLi~~~h~~~~-~~~~e~~ 376 (1276)
+.+..|...+.++.|+.++.....++ ...+++.. -|..|.|+. .|++|+|++|++-.-.++. +...++.
T Consensus 8 ~~L~~Av~~~dl~~l~~~~~~g~d~~~~~~~~~~~~~g---~t~Lh~A~~~~~~~~~~iv~~Ll~~gadin~~d~~g~Tp 84 (154)
T d1dcqa1 8 HSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPD---ETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTA 84 (154)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTT---CBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCH
T ss_pred HHHHHHHHhCCHHHHHHHHHcCCCcCCCCCcccCCCCC---CchHHHHHHhcCCCCHHHHHHHHHcCCChhhhhhhhccc
Confidence 34567777888888888876544322 22222221 123344432 4789999999875543332 3333333
Q ss_pred HHHHhhhcccccCCChhHHHHHhhhcccccCCCChhhhhcccccchhccccCCHhHHHhhcccc
Q psy9003 377 KYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDEC 440 (1276)
Q Consensus 377 ~~~~~~~~~a~~~~~id~vkyLi~~~h~~~~~~~~~~~~~~vt~lh~a~~~~~~~~~~yli~~~ 440 (1276)
.+ .|...|+.|++++|+.. .+++-..+.+|. ||||.|+.+|+.+++++|+...
T Consensus 85 Lh------~A~~~~~~~~v~~Ll~~-gad~~~~d~~g~----tpL~~A~~~~~~~i~~~L~~~~ 137 (154)
T d1dcqa1 85 LH------YCCLTDNAECLKLLLRG-KASIEIANESGE----TPLDIAKRLKHEHCEELLTQAL 137 (154)
T ss_dssp HH------HHHHTTCHHHHHHHHHT-TCCTTCCCTTSC----CHHHHHHHTTCHHHHHHHHHHH
T ss_pred cc------ccccccccccccccccc-CccccccCCCCC----CHHHHHHHcCCHHHHHHHHHhC
Confidence 33 33346899999999964 566667788888 9999999999999999998644
|
| >d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: Myotrophin species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.66 E-value=7.3e-06 Score=76.47 Aligned_cols=96 Identities=17% Similarity=0.025 Sum_probs=70.4
Q ss_pred hhhcccccCCCHHHHHHHHhhhhhcCCCCCcchhhhhhhhhhccccCCCHHHHHHHHHhhhhccCCCChhhhhhhhhhhc
Q psy9003 514 DECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECH 593 (1276)
Q Consensus 514 t~~~~a~~~g~~e~~~~lv~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 593 (1276)
|+...|+..|++|.+++|++.+.++|..+. ..-|..|.|...|+.|.+++|++.++++|..... ..|..+
T Consensus 4 tpL~~A~~~g~~~~v~~Ll~~g~d~n~~~~-----~g~t~lh~A~~~~~~~~~~~ll~~g~din~~d~~-----g~tpLh 73 (118)
T d1myoa_ 4 KEFMWALKNGDLDEVKDYVAKGEDVNRTLE-----GGRKPLHYAADCGQLEILEFLLLKGADINAPDKH-----HITPLL 73 (118)
T ss_dssp HHHHHHHHTTCHHHHHHHHTTTCCCCCCSS-----SSCCTTHHHHHHSTTTHHHHHHHSSCTTTCCSSS-----CSCHHH
T ss_pred hHHHHHHHCCCHHHHHHHHHhhhccccccc-----cccccccccccccccccccccccccceeeecccc-----cccchh
Confidence 456678889999999999988887775444 3445566666888899999999988888732222 134555
Q ss_pred ccccCCCHHHHHHHHhhhhhccCCCC
Q psy9003 594 KAGLFGTPEQLKYLVDECHKAGLFGT 619 (1276)
Q Consensus 594 ~~~~~~~~e~~~~l~~~~~~~~~~~~ 619 (1276)
-|...|++|.+++|++.++++|.+-+
T Consensus 74 ~A~~~~~~~~v~~Ll~~Gad~~~~d~ 99 (118)
T d1myoa_ 74 SAVYEGHVSCVKLLLSKGADKTVKGP 99 (118)
T ss_dssp HHHTTTCCHHHHHHHTTCCCSSSSSS
T ss_pred hhhhcCchhhhhhhhcccccceeeCC
Confidence 55588899999999998888876543
|
| >d1hx0a2 c.1.8.1 (A:1-403) Animal alpha-amylase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Animal alpha-amylase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=97.63 E-value=1e-05 Score=89.82 Aligned_cols=44 Identities=14% Similarity=0.158 Sum_probs=42.1
Q ss_pred cccccCCChHHHHHHHHHHHHhcCc-----------------------------------CCCHHHHHHHHHHHHHcCCC
Q psy9003 136 CHKAGLFGTPEQLKYLVDECHKAGL-----------------------------------FGTPEQLKYLVDECHKAGLF 180 (1276)
Q Consensus 136 ~h~gs~~~y~e~a~~li~y~~~~~y-----------------------------------ygtp~~l~~~vd~~h~~~i~ 180 (1276)
+|+-.| +|.+||++|.+||+++|| |||++||+.||++||++||+
T Consensus 14 ~~~f~w-~~~~i~~e~~~yL~~lG~taIwl~P~~e~~~~~~~~~~~y~gY~~~dY~v~~~~Gt~~dfk~Lv~~aH~~GI~ 92 (403)
T d1hx0a2 14 VHLFEW-RWVDIALECERYLGPKGFGGVQVSPPNENIVVTNPSRPWWERYQPVSYKLCTRSGNENEFRDMVTRCNNVGVR 92 (403)
T ss_dssp EEETTC-CHHHHHHHHHHTTTTTTCCEEEECCCSCBBCCTTTTSCGGGGGSBSCSCSCBTTBCHHHHHHHHHHHHHTTCE
T ss_pred EEeecC-cHHHHHHHHHHHHHHhCCCEEEeCcCccCccCCCCCCCCceeecCCCCccCCCCCCHHHHHHHHHHHHhcCCE
Confidence 588889 899999999999999999 99999999999999999999
|
| >d2qlvb1 b.1.18.21 (B:161-247) SIP2 {Saccharomyces cerevisiae [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: E set domains family: AMPK-beta glycogen binding domain-like domain: SIP2 species: Saccharomyces cerevisiae [TaxId: 4932]
Probab=97.57 E-value=5e-05 Score=68.32 Aligned_cols=66 Identities=17% Similarity=0.229 Sum_probs=48.4
Q ss_pred eEEEEEccCCcEEEEEccCCCCcccccccee-cCCCeEEEEcCCCCCCCcccCcccEEEEEEEEeCCeeeeecCCcceEe
Q psy9003 782 CHKAGLLCFMHVVCAAGDFNNWNREEFAYKK-LDFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHGHLLDRLSPWATYV 860 (1276)
Q Consensus 782 a~FalwAP~A~~VsLvGDFN~wd~~~~pM~r-~~~GVWsl~Ip~~~~G~~~i~hGs~YkYrV~~~dG~~~~~~DPYAkav 860 (1276)
+.|+ |.+.+++|+|.|+||+|++...+|.. ...|+|+++++. ..|. ..|+|.+ ||.+ ..||-...+
T Consensus 6 v~f~-w~~~g~~V~v~GsFn~W~~~~~~~~~~~~~g~~~~~l~l-~~G~------y~YKFiV---DG~w--~~d~~~p~~ 72 (87)
T d2qlvb1 6 VEIR-WQQGGSKVYVTGSFTKWRKMIGLIPDSDNNGSFHVKLRL-LPGT------HRFRFIV---DNEL--RVSDFLPTA 72 (87)
T ss_dssp EEEE-ECSCCSCEEEEEGGGTTSSCEECEECSSSTTCEEEEEEE-CSEE------EEEEEEE---TTEE--ECCTTSCEE
T ss_pred EEEE-ECCCCeEEEEEEEecCcCcccccccccCCCccEEEEEeC-CCCC------EEEEEEE---CCcE--EcCCCCCee
Confidence 4675 89999999999999999865444433 457999999963 2332 5677766 7876 678877643
|
| >d1ud2a2 c.1.8.1 (A:1-390) Bacterial alpha-amylase {Bacillus sp., ksm-k38 [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Bacterial alpha-amylase species: Bacillus sp., ksm-k38 [TaxId: 1409]
Probab=97.37 E-value=4.4e-05 Score=81.58 Aligned_cols=37 Identities=16% Similarity=0.169 Sum_probs=35.1
Q ss_pred ChHHHHHHHHHHHHhcCc---------------------------------------CCCHHHHHHHHHHHHHcCCC
Q psy9003 143 GTPEQLKYLVDECHKAGL---------------------------------------FGTPEQLKYLVDECHKAGLF 180 (1276)
Q Consensus 143 ~y~e~a~~li~y~~~~~y---------------------------------------ygtp~~l~~~vd~~h~~~i~ 180 (1276)
+|++|+++| ||+|++|+ |||++||+.||++||++||+
T Consensus 21 ~~~~i~~kL-dyLk~LGvt~I~l~Pi~~~~~~~~~gY~~~d~~~~~~~~~~~~vd~~~Gt~~efk~lV~~~H~~GI~ 96 (390)
T d1ud2a2 21 HWNRLHDDA-AALSDAGITAIWIPPAYKGNSQADVGYGAYDLYDLGEFNQKGTVRTKYGTKAQLERAIGSLKSNDIN 96 (390)
T ss_dssp HHHHHHHHH-HHHHHHTCCEEEECCCSEESSTTCCSSSEEETTCSSCSCBTTBSSCSSCCHHHHHHHHHHHHHTTCE
T ss_pred CHHHHHHHH-HHHHHcCCCEEEeCCCccCCCCCCCCCCccCCcccccccccCCcCCCCCCHHHHHHHHHHHHhcCCc
Confidence 599999996 99999999 89999999999999999998
|
| >d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: Pyk2-associated protein beta species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.34 E-value=0.0001 Score=72.37 Aligned_cols=125 Identities=12% Similarity=-0.041 Sum_probs=85.2
Q ss_pred hhhhcccccCCCHHHHHHHHhhhhhcCCC----CCcc----hhhhhhhhhhccccCCCHHHHHHHHHhhhhccCCCChhh
Q psy9003 513 VDECHKAGLFGTPEQLKYLVDECHKAGLF----GTPE----QLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQ 584 (1276)
Q Consensus 513 ~t~~~~a~~~g~~e~~~~lv~~~~~~~~~----~t~~----~l~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~ 584 (1276)
++...+|...++++.|+.++..+.+++.. .+++ .|++.+ +....|++|-+++|++.++++|....+-
T Consensus 7 l~~L~~Av~~~dl~~l~~~~~~g~d~~~~~~~~~~~~~g~t~Lh~A~----~~~~~~~~~iv~~Ll~~gadin~~d~~g- 81 (154)
T d1dcqa1 7 LHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAV----RSVDRTSLHIVDFLVQNSGNLDKQTGKG- 81 (154)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHH----HHCCTTTHHHHHHHHHHCSCTTCCCTTC-
T ss_pred HHHHHHHHHhCCHHHHHHHHHcCCCcCCCCCcccCCCCCCchHHHHH----HhcCCCCHHHHHHHHHcCCChhhhhhhh-
Confidence 34556778888999999888877766622 1111 343333 1224688999999999988887332222
Q ss_pred hhhhhhhhcccccCCCHHHHHHHHhhhhhccCCCChhhhhhhHHHhhhccCCCCHHHHHHHHHHHHh
Q psy9003 585 LKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHK 651 (1276)
Q Consensus 585 ~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 651 (1276)
.|..|-|..+|++|.+++|+..++++|.+-..- .++.+-|..+|+.|.+++|..+.+.
T Consensus 82 ----~TpLh~A~~~~~~~~v~~Ll~~gad~~~~d~~g-----~tpL~~A~~~~~~~i~~~L~~~~~~ 139 (154)
T d1dcqa1 82 ----STALHYCCLTDNAECLKLLLRGKASIEIANESG-----ETPLDIAKRLKHEHCEELLTQALSG 139 (154)
T ss_dssp ----CCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTS-----CCHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred ----ccccccccccccccccccccccCccccccCCCC-----CCHHHHHHHcCCHHHHHHHHHhCCC
Confidence 445555558899999999999988887653332 5666667777888999888886654
|
| >d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: Swi6 ankyrin-repeat fragment species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.22 E-value=8.3e-05 Score=79.32 Aligned_cols=45 Identities=24% Similarity=0.152 Sum_probs=26.8
Q ss_pred CCChhHHHHHhhhcccccCCCChhhhhcccccchhccccCC-------HhHHHhhcc
Q psy9003 389 FGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGT-------PEQLKYLVD 438 (1276)
Q Consensus 389 ~~~id~vkyLi~~~h~~~~~~~~~~~~~~vt~lh~a~~~~~-------~~~~~yli~ 438 (1276)
.|++|+|++||.. -+++-..+..|. ||||.|+..++ .+++++|..
T Consensus 117 ~g~~~~v~~Ll~~-gad~~~~d~~G~----TpL~~A~~~~~~~~~~~~~~ll~~l~~ 168 (301)
T d1sw6a_ 117 IANLELVKHLVKH-GSNRLYGDNMGE----SCLVKAVKSVNNYDSGTFEALLDYLYP 168 (301)
T ss_dssp TTCHHHHHHHHHT-TCCTTBCCTTCC----CHHHHHHHSSHHHHTTCHHHHHHHHGG
T ss_pred cCCHHHHHHHHHC-CCCCCcCCcccc----cHHHHhhhcccchhhhhHHHHHHHHhh
Confidence 4666666666633 355555666677 77777775433 245565544
|
| >d1lwha2 c.1.8.1 (A:1-391) 4-alpha-glucanotransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: 4-alpha-glucanotransferase species: Thermotoga maritima [TaxId: 2336]
Probab=97.22 E-value=8.9e-05 Score=81.10 Aligned_cols=45 Identities=11% Similarity=0.248 Sum_probs=42.4
Q ss_pred ccccccCC--------ChHHHHHHHHHHHHhcCc----------------------------CCCHHHHHHHHHHHHHcC
Q psy9003 135 ECHKAGLF--------GTPEQLKYLVDECHKAGL----------------------------FGTPEQLKYLVDECHKAG 178 (1276)
Q Consensus 135 e~h~gs~~--------~y~e~a~~li~y~~~~~y----------------------------ygtp~~l~~~vd~~h~~~ 178 (1276)
|||.+||- +++.|.++| ||+|++|. |||++||+.||++||++|
T Consensus 5 ei~~~~F~d~~~dg~Gd~~gi~~kL-dyl~~LGv~~I~l~Pi~~~~~~~GY~~~d~~~vd~~~Gt~~d~~~lv~~~h~~g 83 (391)
T d1lwha2 5 QIYVRSFRDGNLDGVGDFRGLKNAV-SYLKELGIDFVWLMPVFSSISFHGYDVVDFYSFKAEYGSEREFKEMIEAFHDSG 83 (391)
T ss_dssp EECGGGTCCSSSSSSCCHHHHHHTH-HHHHHTTCSEEEECCCEECSSSSCCSCSEEEEECGGGCCHHHHHHHHHHHHHTT
T ss_pred EEccccccCCCCCCccCHHHHHHhh-HHHHHcCCCEEEECCCCCCCCCCCCCccCCCCcCcccCCHHHHHHHHHHHHhcC
Confidence 78888876 699999998 99999999 999999999999999999
Q ss_pred CC
Q psy9003 179 LF 180 (1276)
Q Consensus 179 i~ 180 (1276)
|+
T Consensus 84 i~ 85 (391)
T d1lwha2 84 IK 85 (391)
T ss_dssp CE
T ss_pred CE
Confidence 99
|
| >d1ua7a2 c.1.8.1 (A:4-347) Bacterial alpha-amylase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Bacterial alpha-amylase species: Bacillus subtilis [TaxId: 1423]
Probab=97.21 E-value=6.4e-05 Score=82.47 Aligned_cols=43 Identities=19% Similarity=0.298 Sum_probs=40.0
Q ss_pred cccccCCChHHHHHHHHHHHHhcCc---------------------------------------CCCHHHHHHHHHHHHH
Q psy9003 136 CHKAGLFGTPEQLKYLVDECHKAGL---------------------------------------FGTPEQLKYLVDECHK 176 (1276)
Q Consensus 136 ~h~gs~~~y~e~a~~li~y~~~~~y---------------------------------------ygtp~~l~~~vd~~h~ 176 (1276)
+|+..| +|.+|+++| ||+|++|+ |||++||+.||++||+
T Consensus 9 ~~~f~~-~f~~i~~~l-dyl~~lGv~aIwl~Pi~~~~~~~~~~~~~~~~y~gY~~~dy~~vd~~~Gt~~df~~LV~~aH~ 86 (344)
T d1ua7a2 9 LHAWNW-SFNTLKHNM-KDIHDAGYTAIQTSPINQVKEGNQGDKSMSNWYWLYQPTSYQIGNRYLGTEQEFKEMCAAAEE 86 (344)
T ss_dssp EECTTB-CHHHHHHTH-HHHHHTTCSEEEECCCEEECCTGGGCCBGGGGGGGGCEEEEEEEETTTEEHHHHHHHHHHHHT
T ss_pred EEecCC-cHHHHHHhH-HHHHHcCCCEEEeCCCeeCCCcCCCCCCCCCCccccccccCCCCCCCCCCHHHHHHHHHHhcc
Confidence 366677 899999999 99999999 8999999999999999
Q ss_pred cCCC
Q psy9003 177 AGLF 180 (1276)
Q Consensus 177 ~~i~ 180 (1276)
.||+
T Consensus 87 ~Gi~ 90 (344)
T d1ua7a2 87 YGIK 90 (344)
T ss_dssp TTCE
T ss_pred ccee
Confidence 9999
|
| >d1m53a2 c.1.8.1 (A:43-520) Isomaltulose synthase PalI {Klebsiella sp., lx3 [TaxId: 576]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Isomaltulose synthase PalI species: Klebsiella sp., lx3 [TaxId: 576]
Probab=97.20 E-value=9e-05 Score=83.12 Aligned_cols=45 Identities=22% Similarity=0.279 Sum_probs=41.8
Q ss_pred ccccccCC--------ChHHHHHHHHHHHHhcCc-----------------------------CCCHHHHHHHHHHHHHc
Q psy9003 135 ECHKAGLF--------GTPEQLKYLVDECHKAGL-----------------------------FGTPEQLKYLVDECHKA 177 (1276)
Q Consensus 135 e~h~gs~~--------~y~e~a~~li~y~~~~~y-----------------------------ygtp~~l~~~vd~~h~~ 177 (1276)
|||.++|. +++-|++.| ||+|++|. |||++||+.||++||++
T Consensus 13 ei~~~~F~d~~~~~~Gd~~Gi~~kL-dyLk~LGv~~I~L~Pi~~~~~~~~GY~~~d~~~vd~~~Gt~~df~~Lv~~aH~~ 91 (478)
T d1m53a2 13 QIYPRSFKDTNDDGIGDIRGIIEKL-DYLKSLGIDAIWINPHYDSPNTDNGYDISNYRQIMKEYGTMEDFDSLVAEMKKR 91 (478)
T ss_dssp EECGGGTCCSSSSSSCCHHHHHHTH-HHHHHHTCCEEEECCCEECCCTTTTSSCSEEEEECGGGCCHHHHHHHHHHHHHT
T ss_pred EEecchhcCCCCCCccCHHHHHHhh-HHHHHcCCCEEEECCCCCCCCCCCCcCccCCCCcCcccCCHHHHHHHHHHHHHC
Confidence 78888876 599999987 99999998 99999999999999999
Q ss_pred CCC
Q psy9003 178 GLF 180 (1276)
Q Consensus 178 ~i~ 180 (1276)
||+
T Consensus 92 Gi~ 94 (478)
T d1m53a2 92 NMR 94 (478)
T ss_dssp TCE
T ss_pred CCE
Confidence 998
|
| >d1eh9a3 c.1.8.1 (A:91-490) Glycosyltrehalose trehalohydrolase, central domain {Archaeon Sulfolobus solfataricus, km1 [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Glycosyltrehalose trehalohydrolase, central domain species: Archaeon Sulfolobus solfataricus, km1 [TaxId: 2287]
Probab=97.19 E-value=9.8e-05 Score=80.86 Aligned_cols=45 Identities=33% Similarity=0.510 Sum_probs=42.1
Q ss_pred ccccccCC---ChHHHHHHHHHHHHhcCc------------------------------CCCHHHHHHHHHHHHHcCCC
Q psy9003 135 ECHKAGLF---GTPEQLKYLVDECHKAGL------------------------------FGTPEQLKYLVDECHKAGLF 180 (1276)
Q Consensus 135 e~h~gs~~---~y~e~a~~li~y~~~~~y------------------------------ygtp~~l~~~vd~~h~~~i~ 180 (1276)
|+|.+||. +++.|.+. +||+|++|+ |||++||+.||++||+.||+
T Consensus 16 e~~v~~f~~~Gd~~gi~~~-ldyi~~LGv~~i~l~Pv~~~~~~~~~GY~~~d~~~vd~~~Gt~~dlk~lv~~~h~~gi~ 93 (400)
T d1eh9a3 16 EIHVGTFTPEGTFEGVIRK-LDYLKDLGITAIEIMPIAQFPGKRDWGYDGVYLYAVQNSYGGPEGFRKLVDEAHKKGLG 93 (400)
T ss_dssp EECTTTSSSSCSHHHHHHT-HHHHHHHTCCEEEECCCBCCSSSCCCSTTCCCTTCBCSTTCCHHHHHHHHHHHHHTTCE
T ss_pred EEehhhhCCCCCHHHHHHH-hHHHHHcCCCEEEeCCcCcCCCCCCCCCCCCCCCCcCcccCCHHHHHHHHHHHHhcCCc
Confidence 88999988 79999988 599999998 99999999999999999998
|
| >d1gcya2 c.1.8.1 (A:1-357) G4-amylase (1,4-alpha-D-glucan maltotetrahydrolase) {Pseudomonas stutzeri [TaxId: 316]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: G4-amylase (1,4-alpha-D-glucan maltotetrahydrolase) species: Pseudomonas stutzeri [TaxId: 316]
Probab=97.16 E-value=0.00019 Score=77.30 Aligned_cols=45 Identities=18% Similarity=0.186 Sum_probs=39.6
Q ss_pred ccccccCC-C---------hHHHHHHHHHHHHhcCc-------------------------------------CCCHHHH
Q psy9003 135 ECHKAGLF-G---------TPEQLKYLVDECHKAGL-------------------------------------FGTPEQL 167 (1276)
Q Consensus 135 e~h~gs~~-~---------y~e~a~~li~y~~~~~y-------------------------------------ygtp~~l 167 (1276)
|+++=+|+ + |..|+++| ||+|++|+ |||++||
T Consensus 17 ~~~~~~f~w~~~~~~~~~~~~~i~~kl-~yl~~lGv~aIwl~P~~~~~~~~~~~~~~~~~hgY~~~dy~vd~~~Gt~~df 95 (357)
T d1gcya2 17 EIILQGFHWNVVREAPNDWYNILRQQA-ATIAADGFSAIWMPVPWRDFSSWSDGSKSGGGEGYFWHDFNKNGRYGSDAQL 95 (357)
T ss_dssp CCEEECCCTTHHHHSTTTHHHHHHHHH-HHHHHTTCSEEEECCCSCCCCCBC---CCBCCSSTTCSSSCSCSSSCCHHHH
T ss_pred EEEEeeeecCCCCCCCCcHHHHHHHHH-HHHHHcCCCEEEeCcCeeCCccCCCCCCCCCCCCcChhhcccCccCCCHHHH
Confidence 56666665 3 89999997 99999998 8999999
Q ss_pred HHHHHHHHHcCCC
Q psy9003 168 KYLVDECHKAGLF 180 (1276)
Q Consensus 168 ~~~vd~~h~~~i~ 180 (1276)
+.||++||+.||+
T Consensus 96 ~~LV~~aH~~GI~ 108 (357)
T d1gcya2 96 RQAASALGGAGVK 108 (357)
T ss_dssp HHHHHHHHHTTCE
T ss_pred HHHHHHHHhcCCe
Confidence 9999999999998
|
| >d1z0na1 b.1.18.21 (A:77-163) 5'-AMP-activated protein kinase subunit beta-1 {Rattus norvegicus [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: E set domains family: AMPK-beta glycogen binding domain-like domain: 5'-AMP-activated protein kinase subunit beta-1 species: Rattus norvegicus [TaxId: 10116]
Probab=97.12 E-value=0.00021 Score=64.38 Aligned_cols=61 Identities=23% Similarity=0.368 Sum_probs=45.4
Q ss_pred EEEEEccCCcEEEEEccCCCCccccccceecCCCeEEEEcCCCCCCCcccCcccEEEEEEEEeCCeeeeecCCcceE
Q psy9003 783 HKAGLLCFMHVVCAAGDFNNWNREEFAYKKLDFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHGHLLDRLSPWATY 859 (1276)
Q Consensus 783 ~FalwAP~A~~VsLvGDFN~wd~~~~pM~r~~~GVWsl~Ip~~~~G~~~i~hGs~YkYrV~~~dG~~~~~~DPYAka 859 (1276)
.|+ |.+.|++|+|.|+||+|++ .+|.+ ..|.|+++++ +..|. +.|+|.| ||++ ..||-...
T Consensus 5 ~f~-w~~~a~~V~v~Gsfn~W~~--~~~~~-~~g~~~~tl~-L~~G~------y~YKFiV---DG~w--~~d~~~~~ 65 (87)
T d1z0na1 5 VFR-WTGGGKEVYLSGSFNNWSK--LPMTR-SQNNFVAILD-LPEGE------HQYKFFV---DGQW--THDPSEPI 65 (87)
T ss_dssp EEE-ECSCCSCEEEEEGGGTTCC--EECEE-ETTEEEEEEE-ECSEE------EEEEEEE---TTEE--ECCTTSCE
T ss_pred EEE-EcCCCEEEEEEEEeCCCCc--ccccc-CCCcEEEEEE-CCCce------EEEEEEE---CCEE--EeCCCCCe
Confidence 444 8999999999999999964 56765 5799999996 44553 6677776 7876 56665533
|
| >d1uoka2 c.1.8.1 (A:1-479) Oligo-1,6, glucosidase {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Oligo-1,6, glucosidase species: Bacillus cereus [TaxId: 1396]
Probab=97.05 E-value=0.00013 Score=81.79 Aligned_cols=45 Identities=22% Similarity=0.316 Sum_probs=41.1
Q ss_pred ccccccCC--------ChHHHHHHHHHHHHhcCc-----------------------------CCCHHHHHHHHHHHHHc
Q psy9003 135 ECHKAGLF--------GTPEQLKYLVDECHKAGL-----------------------------FGTPEQLKYLVDECHKA 177 (1276)
Q Consensus 135 e~h~gs~~--------~y~e~a~~li~y~~~~~y-----------------------------ygtp~~l~~~vd~~h~~ 177 (1276)
|||.++|+ +++.|.+.| ||+|++|. |||++||+.||++||+.
T Consensus 13 ei~~~~F~d~~~~~~Gd~~gi~~kL-dYLk~LGv~~I~l~Pi~~~~~~~~GY~~~d~~~vd~~~Gt~~df~~Lv~~aH~~ 91 (479)
T d1uoka2 13 QIYPRSFMDSNGDGIGDLRGIISKL-DYLKELGIDVIWLSPVYESPNDDNGYDISDYCKIMNEFGTMEDWDELLHEMHER 91 (479)
T ss_dssp EECGGGTCCSSSSSSCCHHHHHTTH-HHHHHHTCCEEEECCCEECCCTTTTSSCSEEEEECGGGCCHHHHHHHHHHHHHT
T ss_pred EEEcchhcCCCCCCCcCHHHHHHhh-HHHHHcCCCEEEECCCcCCCCCCCCcCccccCCcCcccCCHHHHHHHHHHHHHC
Confidence 78888877 489999886 99999998 99999999999999999
Q ss_pred CCC
Q psy9003 178 GLF 180 (1276)
Q Consensus 178 ~i~ 180 (1276)
||+
T Consensus 92 Gi~ 94 (479)
T d1uoka2 92 NMK 94 (479)
T ss_dssp TCE
T ss_pred CCE
Confidence 998
|
| >d1ea9c3 c.1.8.1 (C:122-503) Maltogenic amylase, central domain {Bacillus sp., cyclomaltodextrinase [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Maltogenic amylase, central domain species: Bacillus sp., cyclomaltodextrinase [TaxId: 1409]
Probab=96.94 E-value=0.00019 Score=77.99 Aligned_cols=37 Identities=38% Similarity=0.627 Sum_probs=35.5
Q ss_pred ChHHHHHHHHHHHHhcCc----------------------------CCCHHHHHHHHHHHHHcCCC
Q psy9003 143 GTPEQLKYLVDECHKAGL----------------------------FGTPEQLKYLVDECHKAGLF 180 (1276)
Q Consensus 143 ~y~e~a~~li~y~~~~~y----------------------------ygtp~~l~~~vd~~h~~~i~ 180 (1276)
+++.|.++| ||+|++|+ |||++||+.||++||++||+
T Consensus 49 d~~gi~~kL-dylk~LGv~~i~l~Pi~~~~~~~gY~~~~~~~id~~~Gt~~df~~lv~~~h~~gi~ 113 (382)
T d1ea9c3 49 DLQGVIDHL-DHLSKLGVNAVYFTPLFKATTNHKYDTEDYFQIDPQFGDKDTLKKLVDLCHERGIR 113 (382)
T ss_dssp CHHHHHHTH-HHHHHHTCSEEEECCCSSCSSSSTTSCSCTTCCCTTTCCHHHHHHHHHHHTTTTCE
T ss_pred CHHHHHHhh-HHHHhCCCCEEEeCCCccCCCCCCCCcccccccccccCCHHHHHHHHHHHHhhcce
Confidence 689999997 99999999 99999999999999999998
|
| >d2bhua3 c.1.8.1 (A:111-530) Glycosyltrehalose trehalohydrolase, central domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Glycosyltrehalose trehalohydrolase, central domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=96.91 E-value=0.00016 Score=80.08 Aligned_cols=45 Identities=29% Similarity=0.418 Sum_probs=41.8
Q ss_pred ccccccCC---ChHHHHHHHHHHHHhcCc------------------------------CCCHHHHHHHHHHHHHcCCC
Q psy9003 135 ECHKAGLF---GTPEQLKYLVDECHKAGL------------------------------FGTPEQLKYLVDECHKAGLF 180 (1276)
Q Consensus 135 e~h~gs~~---~y~e~a~~li~y~~~~~y------------------------------ygtp~~l~~~vd~~h~~~i~ 180 (1276)
|||.+||. +++.|+++ +||+|++|+ |||++||+.||++||+.||+
T Consensus 21 e~~~~~f~~~Gd~~g~~~~-ldyl~~LGv~~i~L~Pv~~~~~~~~~GY~~~d~~~vdp~~G~~~d~~~lv~~aH~~gi~ 98 (420)
T d2bhua3 21 EVHVGTFTPEGTYRAAAEK-LPYLKELGVTAIQVMPLAAFDGQRGWGYDGAAFYAPYAPYGRPEDLMALVDAAHRLGLG 98 (420)
T ss_dssp EECHHHHSSSCSHHHHHHT-HHHHHHHTCCEEEECCCEECSSSCCCSTTCCEEEEECGGGCCHHHHHHHHHHHHHTTCE
T ss_pred EEehhhcCCCCCHHHHHHh-HHHHHHcCCCEEEeCCCCcCCCCCCCCCCcccCCCcCcccCCHHHHHHHHHHHHhcccc
Confidence 88888887 59999998 599999998 99999999999999999998
|
| >d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: Swi6 ankyrin-repeat fragment species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.83 E-value=0.00049 Score=73.12 Aligned_cols=48 Identities=19% Similarity=0.098 Sum_probs=35.7
Q ss_pred CCCChhhhhcccccchhccccCCHhHHHhhcccccccccCCChhhHHHHHHHH
Q psy9003 407 LFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDEC 459 (1276)
Q Consensus 407 ~~~~~~~~~~~vt~lh~a~~~~~~~~~~yli~~~~~~~~~~~~e~l~~l~~~~ 459 (1276)
+..|.++. |+||.|+..|+.++|++||..+ ++.-..+.++.+-|...+
T Consensus 101 ~~~D~~G~----T~LH~Aa~~g~~~~v~~Ll~~g-ad~~~~d~~G~TpL~~A~ 148 (301)
T d1sw6a_ 101 IPVDEHGN----TPLHWLTSIANLELVKHLVKHG-SNRLYGDNMGESCLVKAV 148 (301)
T ss_dssp SCCSTTCC----CHHHHHHHTTCHHHHHHHHHTT-CCTTBCCTTCCCHHHHHH
T ss_pred cCcCCCCC----CHHHHHHHcCCHHHHHHHHHCC-CCCCcCCcccccHHHHhh
Confidence 44577788 9999999999999999999765 555555655555554443
|
| >d1wzaa2 c.1.8.1 (A:28-436) Bacterial alpha-amylase {Halothermothrix orenii [TaxId: 31909]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Bacterial alpha-amylase species: Halothermothrix orenii [TaxId: 31909]
Probab=96.77 E-value=0.00015 Score=78.88 Aligned_cols=45 Identities=24% Similarity=0.423 Sum_probs=39.6
Q ss_pred ccccccCC--------ChHHHHHHHHHHH--------HhcCc----------------------------CCCHHHHHHH
Q psy9003 135 ECHKAGLF--------GTPEQLKYLVDEC--------HKAGL----------------------------FGTPEQLKYL 170 (1276)
Q Consensus 135 e~h~gs~~--------~y~e~a~~li~y~--------~~~~y----------------------------ygtp~~l~~~ 170 (1276)
|||.+||. +++.|.++| ||+ |++|. |||++||+.|
T Consensus 9 ~~~~~~f~d~~~~~~Gd~~g~~~kL-dyl~~~~~~~i~~LGv~~i~l~Pi~~~~~~~GY~~~d~~~vd~~~G~~~dlk~l 87 (409)
T d1wzaa2 9 EIFVRSFYDSDGDGIGDLKGIIEKL-DYLNDGDPETIADLGVNGIWLMPIFKSPSYHGYDVTDYYKINPDYGTLEDFHKL 87 (409)
T ss_dssp EECGGGSCCSSSSSCCCHHHHHHTH-HHHCCSCTTCCSSCCCSEEEECCCEECSSSSCCSCSEEEEECGGGCCHHHHHHH
T ss_pred EEecchhcCCCCCCCcCHHHHHHhc-cccccccccHHhhcCccEEEECCCCCCCCCCCcCcccCCCcCcccCCHHHHHHH
Confidence 88888875 689998875 665 88987 9999999999
Q ss_pred HHHHHHcCCC
Q psy9003 171 VDECHKAGLF 180 (1276)
Q Consensus 171 vd~~h~~~i~ 180 (1276)
|++||++||+
T Consensus 88 v~~~H~~Gi~ 97 (409)
T d1wzaa2 88 VEAAHQRGIK 97 (409)
T ss_dssp HHHHHHTTCE
T ss_pred HHHHHhcCCE
Confidence 9999999998
|
| >d1ht6a2 c.1.8.1 (A:1-347) Plant alpha-amylase {Barley (Hordeum vulgare), AMY1 isozyme [TaxId: 4513]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Plant alpha-amylase species: Barley (Hordeum vulgare), AMY1 isozyme [TaxId: 4513]
Probab=96.71 E-value=0.00036 Score=74.04 Aligned_cols=36 Identities=25% Similarity=0.436 Sum_probs=32.9
Q ss_pred hHHHHHHHHHHHHhcCc-----------------------------CCCHHHHHHHHHHHHHcCCC
Q psy9003 144 TPEQLKYLVDECHKAGL-----------------------------FGTPEQLKYLVDECHKAGLF 180 (1276)
Q Consensus 144 y~e~a~~li~y~~~~~y-----------------------------ygtp~~l~~~vd~~h~~~i~ 180 (1276)
|+.|+++| ||+|++|+ |||++||+.||++||+.||+
T Consensus 20 ~~~i~~kL-dyl~~lGv~~i~L~Pi~~~~~~~gY~~~d~~~id~~~~G~~~~f~~lv~~~H~~gi~ 84 (347)
T d1ht6a2 20 YNMMMGKV-DDIAAAGVTHVWLPPPSHSVSNEGYMPGRLYDIDASKYGNAAELKSLIGALHGKGVQ 84 (347)
T ss_dssp HHHHHTTH-HHHHHTTCCEEEECCCSCBSSTTSSSBCCTTCGGGCTTCCHHHHHHHHHHHHHTTCE
T ss_pred HHHHHHhH-HHHHHcCCCEEEECCCCcCCCCCCCCccCcCcCCcccCCCHHHHHHHHHHHhhcceE
Confidence 89999996 99999999 88999999999999999888
|
| >d1hvxa2 c.1.8.1 (A:1-393) Bacterial alpha-amylase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Bacterial alpha-amylase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.68 E-value=0.00049 Score=75.61 Aligned_cols=37 Identities=19% Similarity=0.253 Sum_probs=34.9
Q ss_pred ChHHHHHHHHHHHHhcCc---------------------------------------CCCHHHHHHHHHHHHHcCCC
Q psy9003 143 GTPEQLKYLVDECHKAGL---------------------------------------FGTPEQLKYLVDECHKAGLF 180 (1276)
Q Consensus 143 ~y~e~a~~li~y~~~~~y---------------------------------------ygtp~~l~~~vd~~h~~~i~ 180 (1276)
.|.+|.++| ||+|++|+ |||++||+.||++||++||+
T Consensus 22 ~~~~i~~kL-dyLk~LGv~aI~L~Pi~~~~~~~~~GY~~~d~y~~~~~~~~~~vd~~~Gt~~df~~LV~~aH~~GIk 97 (393)
T d1hvxa2 22 LWTKVANEA-NNLSSLGITALWLPPAYKGTSRSDVGYGVYDLYDLGEFNQKGAVRTKYGTKAQYLQAIQAAHAAGMQ 97 (393)
T ss_dssp HHHHHHHHH-HHHHHTTCCEEEECCCSEESSTTCCSSSEEETTCSSCSCBTTBSSCSSCCHHHHHHHHHHHHHTTCE
T ss_pred hHHHHHHHH-HHHHHcCCCEEEECCCCcCCCCCCCCCCccCccccccccccCCcCCCCCCHHHHHHHHHHHHHCCCE
Confidence 389999998 99999999 79999999999999999999
|
| >d1wzla3 c.1.8.1 (A:121-502) Maltogenic amylase, central domain {Thermoactinomyces vulgaris, TVAII [TaxId: 2026]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Maltogenic amylase, central domain species: Thermoactinomyces vulgaris, TVAII [TaxId: 2026]
Probab=96.68 E-value=0.00039 Score=75.56 Aligned_cols=37 Identities=27% Similarity=0.446 Sum_probs=35.4
Q ss_pred ChHHHHHHHHHHHHhcCc----------------------------CCCHHHHHHHHHHHHHcCCC
Q psy9003 143 GTPEQLKYLVDECHKAGL----------------------------FGTPEQLKYLVDECHKAGLF 180 (1276)
Q Consensus 143 ~y~e~a~~li~y~~~~~y----------------------------ygtp~~l~~~vd~~h~~~i~ 180 (1276)
+++.|+++| ||+|+||+ |||++||+.||++||++||+
T Consensus 51 ~~~gi~~kL-dyl~~lGi~~I~l~Pv~~~~~~~gY~~~~~~~vd~~~Gt~~d~~~lv~~~H~~Gi~ 115 (382)
T d1wzla3 51 DLKGVIDRL-PYLEELGVTALYFTPIFASPSHHKYDTADYLAIDPQFGDLPTFRRLVDEAHRRGIK 115 (382)
T ss_dssp CHHHHHHTH-HHHHHHTCCEEEECCCEECSSSSCCSCSEEEEECTTTCCHHHHHHHHHHHHTTTCE
T ss_pred CHHHHHHhh-HHHHHCCCCEEEECCcCCCCcccCCccccccccccCCCCHHHHHHHHHHHHhcccc
Confidence 589999986 99999999 89999999999999999999
|
| >d2d3na2 c.1.8.1 (A:5-398) Bacterial alpha-amylase {Bacillus sp. 707 [TaxId: 1416]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Bacterial alpha-amylase species: Bacillus sp. 707 [TaxId: 1416]
Probab=96.53 E-value=0.00061 Score=74.73 Aligned_cols=37 Identities=19% Similarity=0.218 Sum_probs=34.6
Q ss_pred ChHHHHHHHHHHHHhcCc---------------------------------------CCCHHHHHHHHHHHHHcCCC
Q psy9003 143 GTPEQLKYLVDECHKAGL---------------------------------------FGTPEQLKYLVDECHKAGLF 180 (1276)
Q Consensus 143 ~y~e~a~~li~y~~~~~y---------------------------------------ygtp~~l~~~vd~~h~~~i~ 180 (1276)
.|++|.++| ||+|++|+ |||++||+.||++||++||+
T Consensus 19 ~~~~i~~kL-dyL~~LGv~aIwL~Pi~~~~~~~~~gY~~~~~yd~~~~~~~~~vd~~~Gt~~df~~Lv~~aH~~GIk 94 (394)
T d2d3na2 19 HWNRLNSDA-SNLKSKGITAVWIPPAWKGASQNDVGYGAYDLYDLGEFNQKGTVRTKYGTRSQLQAAVTSLKNNGIQ 94 (394)
T ss_dssp HHHHHHHHH-HHHHHHTCCEEEECCCSEESSTTCCSCSEEETTCSSCSCBTTBSSBTTBCHHHHHHHHHHHHHTTCE
T ss_pred cHHHHHHHH-HHHHHcCCCEEEECcCccCCCCCCCCCCcccCcccccccccCCcCCCCCCHHHHHHHHHHHHHCCCE
Confidence 578999998 99999999 59999999999999999998
|
| >d1bf2a3 c.1.8.1 (A:163-637) Isoamylase, central domain {Pseudomonas amyloderamosa [TaxId: 32043]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Isoamylase, central domain species: Pseudomonas amyloderamosa [TaxId: 32043]
Probab=96.53 E-value=0.00046 Score=77.29 Aligned_cols=45 Identities=20% Similarity=0.247 Sum_probs=38.6
Q ss_pred ccccccC------------CChHHHHHHHHHHHHhcCc------------------------------------------
Q psy9003 135 ECHKAGL------------FGTPEQLKYLVDECHKAGL------------------------------------------ 160 (1276)
Q Consensus 135 e~h~gs~------------~~y~e~a~~li~y~~~~~y------------------------------------------ 160 (1276)
|||++|| =+++-|+++| ||+|++|.
T Consensus 21 ei~v~~f~~~~~~~~~~~~Gd~~Gi~~kL-dyl~~LGvnaiwl~Pi~~~~~~~~~~~~~~~~~~~y~GY~~~d~~~vdp~ 99 (475)
T d1bf2a3 21 EVHVRGFTEQDTSIPAQYRGTYYGAGLKA-SYLASLGVTAVEFLPVQETQNDANDVVPNSDANQNYWGYMTENYFSPDRR 99 (475)
T ss_dssp EECHHHHHTTCTTSCGGGTTSHHHHHHTH-HHHHHHTCCEEEESCCBCBSCTTTTSSTTCCTTCCCSCCCBSCSSCBCGG
T ss_pred EEEhhHhccCCCCCCccccCCHHHHHhhh-HHHHHcCCCEEEeCCCCcCCCcccccccccccCcCCCCCCcccCCCcCcc
Confidence 8888875 1677888875 89999976
Q ss_pred C-------CCHHHHHHHHHHHHHcCCC
Q psy9003 161 F-------GTPEQLKYLVDECHKAGLF 180 (1276)
Q Consensus 161 y-------gtp~~l~~~vd~~h~~~i~ 180 (1276)
| ||++||+.||++||+.||+
T Consensus 100 y~~~~~~~Gt~~d~~~LV~~aH~~GIr 126 (475)
T d1bf2a3 100 YAYNKAAGGPTAEFQAMVQAFHNAGIK 126 (475)
T ss_dssp GCSCCSTTHHHHHHHHHHHHHHHTTCE
T ss_pred cccCCCCCCCHHHHHHHHHHHHhcCcE
Confidence 6 9999999999999999998
|
| >d2qlvb1 b.1.18.21 (B:161-247) SIP2 {Saccharomyces cerevisiae [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: E set domains family: AMPK-beta glycogen binding domain-like domain: SIP2 species: Saccharomyces cerevisiae [TaxId: 4932]
Probab=96.52 E-value=0.00099 Score=59.60 Aligned_cols=52 Identities=23% Similarity=0.394 Sum_probs=38.0
Q ss_pred EEEEEEccCCceEEEEeeccCCCcc-----e-------EEEEEccCccccc-eEEEEEecCCC----CCCccccccc
Q psy9003 75 VRCFEWAPSAQQLYLTGNVSLTPWS-----I-------MEEASLSSIKLIQ-SIQYILTGVFG----TPEQLKYLVD 134 (1276)
Q Consensus 75 ~~f~~wAP~A~~v~l~gdfn~~~w~-----m-------~~~~~~~~~~~g~-~yky~i~~~~g----rp~~as~~~d 134 (1276)
|+|+ |.++|++|+|+|+| |+|+ | +|++.+ .+++|. -|||+| || -|. +..+.|
T Consensus 6 v~f~-w~~~g~~V~v~GsF--n~W~~~~~~~~~~~~~g~~~~~l-~l~~G~y~YKFiV---DG~w~~d~~-~p~~~d 74 (87)
T d2qlvb1 6 VEIR-WQQGGSKVYVTGSF--TKWRKMIGLIPDSDNNGSFHVKL-RLLPGTHRFRFIV---DNELRVSDF-LPTATD 74 (87)
T ss_dssp EEEE-ECSCCSCEEEEEGG--GTTSSCEECEECSSSTTCEEEEE-EECSEEEEEEEEE---TTEEECCTT-SCEEBC
T ss_pred EEEE-ECCCCeEEEEEEEe--cCcCcccccccccCCCccEEEEE-eCCCCCEEEEEEE---CCcEEcCCC-CCeeEC
Confidence 6786 99999999999999 6776 2 899988 567775 366655 56 443 335555
|
| >d1e43a2 c.1.8.1 (A:1-393) Bacterial alpha-amylase {Chimera (Bacillus amyloliquefaciens) and (Bacillus licheniformis) [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Bacterial alpha-amylase species: Chimera (Bacillus amyloliquefaciens) and (Bacillus licheniformis) [TaxId: 1390]
Probab=96.49 E-value=0.00068 Score=74.66 Aligned_cols=37 Identities=14% Similarity=0.221 Sum_probs=34.4
Q ss_pred ChHHHHHHHHHHHHhcCc---------------------------------------CCCHHHHHHHHHHHHHcCCC
Q psy9003 143 GTPEQLKYLVDECHKAGL---------------------------------------FGTPEQLKYLVDECHKAGLF 180 (1276)
Q Consensus 143 ~y~e~a~~li~y~~~~~y---------------------------------------ygtp~~l~~~vd~~h~~~i~ 180 (1276)
.|+.|+++ +||+|++|+ |||.+||+.||++||+.||+
T Consensus 19 ~~~gi~~k-Ldylk~LGvtaI~L~Pi~~~~~~~~~gy~~~~~Y~~~~~~~~~~vd~~~Gt~~df~~Lv~~~H~~Gi~ 94 (393)
T d1e43a2 19 HWKRLQND-AEHLSDIGITAVWIPPAYKGLSQSDNGYGPYDLYDLGEFQQKGTVRTKYGTKSELQDAIGSLHSRNVQ 94 (393)
T ss_dssp HHHHHHHH-HHHHHHHTCCEEEECCCSEESSTTCCSSSEEETTCSSCSCBTTBSSCSSCCHHHHHHHHHHHHHTTCE
T ss_pred CHHHHHHH-HHHHHHcCCCEEEeCcCccCCCCCCCCCCcccCcccccccccCccCCCCCCHHHHHHHHHHHHHcCCE
Confidence 58999999 699999999 69999999999999999998
|
| >d1z0na1 b.1.18.21 (A:77-163) 5'-AMP-activated protein kinase subunit beta-1 {Rattus norvegicus [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: E set domains family: AMPK-beta glycogen binding domain-like domain: 5'-AMP-activated protein kinase subunit beta-1 species: Rattus norvegicus [TaxId: 10116]
Probab=96.47 E-value=0.0014 Score=58.88 Aligned_cols=46 Identities=22% Similarity=0.335 Sum_probs=33.4
Q ss_pred EEEEEEccCCceEEEEeecc-CCCcce-----EEEEEccCccccceEEEEEecCCC
Q psy9003 75 VRCFEWAPSAQQLYLTGNVS-LTPWSI-----MEEASLSSIKLIQSIQYILTGVFG 124 (1276)
Q Consensus 75 ~~f~~wAP~A~~v~l~gdfn-~~~w~m-----~~~~~~~~~~~g~~yky~i~~~~g 124 (1276)
|+| +|.++|+.|+|+|+|| |++..| .|++.+ .+.+|. |+||.. .+|
T Consensus 4 ~~f-~w~~~a~~V~v~Gsfn~W~~~~~~~~~g~~~~tl-~L~~G~-y~YKFi-VDG 55 (87)
T d1z0na1 4 TVF-RWTGGGKEVYLSGSFNNWSKLPMTRSQNNFVAIL-DLPEGE-HQYKFF-VDG 55 (87)
T ss_dssp EEE-EECSCCSCEEEEEGGGTTCCEECEEETTEEEEEE-EECSEE-EEEEEE-ETT
T ss_pred EEE-EEcCCCEEEEEEEEeCCCCccccccCCCcEEEEE-ECCCce-EEEEEE-ECC
Confidence 455 4999999999999995 444335 999988 578886 666432 267
|
| >d1mxga2 c.1.8.1 (A:1-361) Bacterial alpha-amylase {Archaeon Pyrococcus woesei [TaxId: 2262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Bacterial alpha-amylase species: Archaeon Pyrococcus woesei [TaxId: 2262]
Probab=96.37 E-value=0.00098 Score=72.71 Aligned_cols=36 Identities=28% Similarity=0.407 Sum_probs=33.0
Q ss_pred hHHHHHHHHHHHHhcCc----------------------------------------CCCHHHHHHHHHHHHHcCCC
Q psy9003 144 TPEQLKYLVDECHKAGL----------------------------------------FGTPEQLKYLVDECHKAGLF 180 (1276)
Q Consensus 144 y~e~a~~li~y~~~~~y----------------------------------------ygtp~~l~~~vd~~h~~~i~ 180 (1276)
|+.|+++| ||+|++|+ |||++||+.||++||+.||+
T Consensus 27 ~~gi~~kL-dylk~LGv~~Iwl~Pv~~~~~~~~~~gY~~~dy~~~~~~~~~~~vd~~~Gt~~d~~~LV~~aH~~Gik 102 (361)
T d1mxga2 27 WDHIRSKI-PEWYEAGISAIWLPPPSKGMSGGYSMGYDPYDYFDLGEYYQKGTVETRFGSKEELVRLIQTAHAYGIK 102 (361)
T ss_dssp HHHHHHHH-HHHHHHTCCEEECCCCSEETTGGGCCSSSEEETTCSSCSCBTTBSSCSSCCHHHHHHHHHHHHHTTCE
T ss_pred HHHHHHHH-HHHHhcCCCEEEeCcCeeCCCCCCCCCCCcccccccCccccccCCCCCCCCHHHHHHHHHHHHHCCCE
Confidence 79999998 89999999 78899999999999999998
|
| >d1qhoa4 c.1.8.1 (A:1-407) Cyclodextrin glycosyltransferase {Bacillus stearothermophilus, maltogenic alpha-amylase [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Cyclodextrin glycosyltransferase species: Bacillus stearothermophilus, maltogenic alpha-amylase [TaxId: 1422]
Probab=96.34 E-value=0.00093 Score=73.66 Aligned_cols=37 Identities=22% Similarity=0.337 Sum_probs=34.8
Q ss_pred ChHHHHHHHHHHHHhcCc-------------------------------------CCCHHHHHHHHHHHHHcCCC
Q psy9003 143 GTPEQLKYLVDECHKAGL-------------------------------------FGTPEQLKYLVDECHKAGLF 180 (1276)
Q Consensus 143 ~y~e~a~~li~y~~~~~y-------------------------------------ygtp~~l~~~vd~~h~~~i~ 180 (1276)
+++.|.++| ||+|++|+ |||++||+.||++||++||+
T Consensus 50 d~~gi~~kL-dyl~~LGv~~I~L~Pi~~~~~~~~~~~~~~~~gY~~~d~~~id~~~Gt~~d~k~Lv~~~H~~Gi~ 123 (407)
T d1qhoa4 50 DLEGVRQKL-PYLKQLGVTTIWLSPVLDNLDTLAGTDNTGYHGYWTRDFKQIEEHFGNWTTFDTLVNDAHQNGIK 123 (407)
T ss_dssp CHHHHHHTH-HHHHHHTCCEEEECCCEEECSSCSSTTCCCTTSCSEEEEEEECTTTCCHHHHHHHHHHHHHTTCE
T ss_pred CHHHHHHHH-HHHHHcCCCEEEeCccccCCcccCCCCCCCCCceeeeecCCCCCCCCCHHHHHHHHHHhhhcccc
Confidence 689999987 99999996 99999999999999999999
|
| >d1m7xa2 b.71.1.1 (A:623-728) 1,4-alpha-glucan branching enzyme {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Glycosyl hydrolase domain superfamily: Glycosyl hydrolase domain family: alpha-Amylases, C-terminal beta-sheet domain domain: 1,4-alpha-glucan branching enzyme species: Escherichia coli [TaxId: 562]
Probab=96.32 E-value=0.00095 Score=62.16 Aligned_cols=40 Identities=28% Similarity=0.377 Sum_probs=33.9
Q ss_pred CCeeEeecCCCeEEEEEc-----CcEEEEEeCCCCCCccccccccC
Q psy9003 1235 PGYVSTKHEGDKVIIFER-----AGLLFAFNFNGTQSFTDYRGKSN 1275 (1276)
Q Consensus 1235 ~~~~l~nHD~~RVlsf~R-----~~ll~v~N~~~~~s~~~y~~~~~ 1275 (1276)
..|+-.++....|++|.| ++++||+||+|. ++++|+||||
T Consensus 4 F~Wi~~~d~~~sV~af~R~~~~~~~~vvV~Nfsp~-~~~~Y~igvp 48 (106)
T d1m7xa2 4 FEWLVVDDKERSVLIFVRRDKEGNEIIVASNFTPV-PRHDYRFGIN 48 (106)
T ss_dssp EEEEEEEETTTTEEEEEEECTTCCEEEEEEECSSC-CEEEECCBCS
T ss_pred CEEeeCCCCCCCEEEEEEeCCCCCEEEEEEeCCCC-ccCcEEcCCC
Confidence 346666777777999999 359999999995 9999999997
|
| >d2guya2 c.1.8.1 (A:1-381) Fungal alpha-amylases {Aspergillus oryzae, Taka-amylase [TaxId: 5062]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Fungal alpha-amylases species: Aspergillus oryzae, Taka-amylase [TaxId: 5062]
Probab=96.32 E-value=0.00099 Score=73.20 Aligned_cols=37 Identities=27% Similarity=0.477 Sum_probs=35.3
Q ss_pred ChHHHHHHHHHHHHhcCc------------------------------------CCCHHHHHHHHHHHHHcCCC
Q psy9003 143 GTPEQLKYLVDECHKAGL------------------------------------FGTPEQLKYLVDECHKAGLF 180 (1276)
Q Consensus 143 ~y~e~a~~li~y~~~~~y------------------------------------ygtp~~l~~~vd~~h~~~i~ 180 (1276)
+++.|++.| ||+|++|+ |||++||+.||++||++||+
T Consensus 41 d~~gi~~~L-dyl~~LGv~~I~L~Pi~~~~~~~~~~~~~~~gY~~~d~~~vd~~~Gt~~dfk~lv~~~H~~Gi~ 113 (381)
T d2guya2 41 TWQGIIDKL-DYIQGMGFTAIWITPVTAQLPQTTAYGDAYHGYWQQDIYSLNENYGTADDLKALSSALHERGMY 113 (381)
T ss_dssp CHHHHHHTH-HHHHTTTCCEEEECCCEEECCCCBTTBCCTTSCSEEEEEEECTTSCCHHHHHHHHHHHHHTTCE
T ss_pred CHHHHHHhH-HHHHHCCCCEEEeCCCCCCCcccCCCCCCCCCcccccccccccCCCCHHHHHHHHHHHHhhccc
Confidence 789999987 99999997 99999999999999999999
|
| >d1j0ha3 c.1.8.1 (A:124-505) Neopullulanase, central domain {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Neopullulanase, central domain species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.25 E-value=0.0011 Score=71.99 Aligned_cols=37 Identities=35% Similarity=0.602 Sum_probs=35.0
Q ss_pred ChHHHHHHHHHHHHhcCc----------------------------CCCHHHHHHHHHHHHHcCCC
Q psy9003 143 GTPEQLKYLVDECHKAGL----------------------------FGTPEQLKYLVDECHKAGLF 180 (1276)
Q Consensus 143 ~y~e~a~~li~y~~~~~y----------------------------ygtp~~l~~~vd~~h~~~i~ 180 (1276)
+++.|+++| ||+|++|+ |||++||+.||++||+.||+
T Consensus 51 ~~~gi~~kl-dyl~~LGv~~i~L~Pi~~~~~~~gy~~~d~~~vd~~~Gt~~~~~~lv~~aH~~Gi~ 115 (382)
T d1j0ha3 51 DLQGIIDHL-DYLVDLGITGIYLTPIFRSPSNHKYDTADYFEVDPHFGDKETLKTLIDRCHEKGIR 115 (382)
T ss_dssp CHHHHHHTH-HHHHHHTCCEEEECCCEECSSSSCCSCSEEEEECTTTCCHHHHHHHHHHHHHTTCE
T ss_pred CHHHHHHhH-HHHHHcCCCEEEeCCCCcCCcccCCCcccccccCCCCCCHHHHHHHHHHhhhccce
Confidence 689999885 99999998 99999999999999999998
|
| >d1h3ga3 c.1.8.1 (A:96-517) Cyclomaltodextrinase, central domain {Flavobacterium sp. 92 [TaxId: 197856]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Cyclomaltodextrinase, central domain species: Flavobacterium sp. 92 [TaxId: 197856]
Probab=96.24 E-value=0.0011 Score=72.83 Aligned_cols=37 Identities=24% Similarity=0.354 Sum_probs=35.4
Q ss_pred ChHHHHHHHHHHHHhcCc--------------------------------CCCHHHHHHHHHHHHHcCCC
Q psy9003 143 GTPEQLKYLVDECHKAGL--------------------------------FGTPEQLKYLVDECHKAGLF 180 (1276)
Q Consensus 143 ~y~e~a~~li~y~~~~~y--------------------------------ygtp~~l~~~vd~~h~~~i~ 180 (1276)
+++-|+++| ||+|++|+ |||++||++||++||+.||+
T Consensus 51 d~~Gl~~kL-dyl~~LGv~~I~l~Pi~~~~~~~~~~~GY~~~d~~~vd~~~Gt~~df~~lv~~~H~~Gi~ 119 (422)
T d1h3ga3 51 DIRGTIDHL-DYIAGLGFTQLWPTPLVENDAAAYSYHGYAATDHYRIDPRYGSNEDFVRLSTEARKRGMG 119 (422)
T ss_dssp CHHHHHHTH-HHHHHHTCCEEEECCCEECCCSSCGGGCCSCSEEEEECTTTCCHHHHHHHHHHHHHTTCE
T ss_pred CHHHHHHhH-HHHHHCCCCEEEeCCcccCCCCCCCCCCCCccccCCcccccCCHHHHHHHHHHHHHhCcc
Confidence 789999997 99999988 89999999999999999999
|
| >d3bmva4 c.1.8.1 (A:1-406) Cyclodextrin glycosyltransferase {Thermoanaerobacterium [TaxId: 28895]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Cyclodextrin glycosyltransferase species: Thermoanaerobacterium [TaxId: 28895]
Probab=96.01 E-value=0.0011 Score=73.06 Aligned_cols=38 Identities=13% Similarity=0.235 Sum_probs=35.2
Q ss_pred ChHHHHHHHH-HHHHhcCc-----------------------------------------CCCHHHHHHHHHHHHHcCCC
Q psy9003 143 GTPEQLKYLV-DECHKAGL-----------------------------------------FGTPEQLKYLVDECHKAGLF 180 (1276)
Q Consensus 143 ~y~e~a~~li-~y~~~~~y-----------------------------------------ygtp~~l~~~vd~~h~~~i~ 180 (1276)
+++-|.+.|= +|+|++|+ |||++||+.||++||++||+
T Consensus 53 dl~Gi~~kLd~~YLk~LGv~~I~L~Pi~~~~~~~~~~~~~~~~~~~~gY~~~d~~~vdp~~Gt~~dfk~LV~~aH~~Gi~ 132 (406)
T d3bmva4 53 DWQGIINKINDGYLTGMGVTAIWIPQPVENIYAVLPDSTFGGSTSYHGYWARDFKRTNPYFGSFTDFQNLINTAHAHNIK 132 (406)
T ss_dssp CHHHHHHHHHTSTTGGGTCCEEEECCCEEECCCCEEETTTEEECSTTSCSEEEEEEECTTTCCHHHHHHHHHHHHHTTCE
T ss_pred CHHHHHHhcCHHHHHHcCCCEEEECCcccccccccCCCCCCCChhhcCcccccccccCcccccHHHHHHHHHHHHhcccc
Confidence 6799999994 79999986 99999999999999999999
|
| >d1gjwa2 c.1.8.1 (A:1-572) Maltosyltransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Maltosyltransferase species: Thermotoga maritima [TaxId: 2336]
Probab=95.84 E-value=0.0014 Score=74.88 Aligned_cols=37 Identities=22% Similarity=0.343 Sum_probs=32.7
Q ss_pred ChHHHHHHHHHHHHhcCc-------------------------------------------CCCHHHHHHHHHHHHHcCC
Q psy9003 143 GTPEQLKYLVDECHKAGL-------------------------------------------FGTPEQLKYLVDECHKAGL 179 (1276)
Q Consensus 143 ~y~e~a~~li~y~~~~~y-------------------------------------------ygtp~~l~~~vd~~h~~~i 179 (1276)
+++-|++. |||+|++|. |||.+||+.||++||++||
T Consensus 118 d~~Gi~~k-LdYLk~LGvtaI~L~Pi~~~~~~~~~~~~~~GY~~~dy~~~dp~~~~~~~~~~Gt~~dfk~lV~~~H~~GI 196 (572)
T d1gjwa2 118 TFFKMMLL-LPFVKSLGADAIYLLPVSRMSDLFKKGDAPSPYSVKNPMELDERYHDPLLEPFKVDEEFKAFVEACHILGI 196 (572)
T ss_dssp CHHHHHHT-HHHHHHHTCCEEEECCCEEECCSSCSSSSCCTTSEEEEEEECGGGSCGGGTTSCHHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHh-hHHHHHcCCCEEEeCCcccCccccCCCCCCCCCCccCCCCCCcccccccccCCCCHHHHHHHHHHHHhcCc
Confidence 67888876 599999998 4999999999999999999
Q ss_pred C
Q psy9003 180 F 180 (1276)
Q Consensus 180 ~ 180 (1276)
+
T Consensus 197 ~ 197 (572)
T d1gjwa2 197 R 197 (572)
T ss_dssp E
T ss_pred E
Confidence 8
|
| >d2aaaa2 c.1.8.1 (A:1-381) Fungal alpha-amylases {Aspergillus niger, acid amylase [TaxId: 5061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Fungal alpha-amylases species: Aspergillus niger, acid amylase [TaxId: 5061]
Probab=95.57 E-value=0.0031 Score=69.25 Aligned_cols=43 Identities=33% Similarity=0.486 Sum_probs=37.7
Q ss_pred ccccccCCChHHHHHHHHHHHHhcCc------------------------------------CCCHHHHHHHHHHHHHcC
Q psy9003 135 ECHKAGLFGTPEQLKYLVDECHKAGL------------------------------------FGTPEQLKYLVDECHKAG 178 (1276)
Q Consensus 135 e~h~gs~~~y~e~a~~li~y~~~~~y------------------------------------ygtp~~l~~~vd~~h~~~ 178 (1276)
|...|+ +++-|.++| ||+|++|+ |||++||+.||++||+.|
T Consensus 35 ~~~~gG--~~~g~~~kL-dyL~~LGv~~I~L~Pi~~~~~~~~~~~~~~~gY~~~d~~~id~~~Gt~~~~k~lv~~aH~~G 111 (381)
T d2aaaa2 35 EIYCGG--SWQGIIDHL-DYIEGMGFTAIWISPITEQLPQDTADGEAYHGYWQQKIYDVNSNFGTADNLKSLSDALHARG 111 (381)
T ss_dssp CSCCCC--CHHHHHHTH-HHHHTTTCCEEEECCCEEECCCCBTTBCSTTSCSEEEEEEECTTTCCHHHHHHHHHHHHTTT
T ss_pred CCcCCc--CHHHHHHHH-HHHHHcCCCEEEeCCCccCCccCCCCCCCCcccccccccccccccCCHHHHHHHHHHHhhhh
Confidence 444444 689999987 99999999 999999999999999999
Q ss_pred CC
Q psy9003 179 LF 180 (1276)
Q Consensus 179 i~ 180 (1276)
|+
T Consensus 112 i~ 113 (381)
T d2aaaa2 112 MY 113 (381)
T ss_dssp CE
T ss_pred hc
Confidence 99
|
| >d1zy9a2 c.1.8.13 (A:178-525) Alpha-galactosidase GalA catalytic domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: YicI catalytic domain-like domain: Alpha-galactosidase GalA catalytic domain species: Thermotoga maritima [TaxId: 2336]
Probab=95.38 E-value=0.012 Score=64.15 Aligned_cols=89 Identities=12% Similarity=0.117 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHcCCEEEEEEeccccCCcccCCCcCCCCCCCcccccCCCCC---CCCCC--CcCCCCCcHHHHHHHHHHH
Q psy9003 1038 QLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGT---HPLWD--SRLFNYSEIEVLRFLLSNL 1112 (1276)
Q Consensus 1038 EfK~LV~alHk~GI~VILDvV~NHt~~~~~~~~~~f~g~~~~Yy~~~~~g~---~~~W~--g~~LN~~np~Vr~~Iidsl 1112 (1276)
.+|.|++.+|++||++.+-+.+......... +. ..+.|....+.+. ...|. ...+|+.+|++++++.+.+
T Consensus 62 glk~l~~~~h~~G~k~gl~~~p~~~~~~s~~----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~lD~~~p~~~~~~~~~~ 136 (348)
T d1zy9a2 62 SVEEMAKVIAENGFIPGIWTAPFSVSETSDV----FN-EHPDWVVKENGEPKMAYRNWNKKIYALDLSKDEVLNWLFDLF 136 (348)
T ss_dssp CHHHHHHHHHHTTCEEEEEECTTEEETTCHH----HH-HCGGGBCEETTEECEEEEETTEEEEEBCTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCEEEEEeeeccccCCcHH----HH-hCccceeccCCCCccccccCCCCeeccCCCcHHHHHHHHHHH
Confidence 5899999999999999999876654433211 00 0122222211110 11222 2457999999999999999
Q ss_pred HHHHHhCCCcEEccCCcccc
Q psy9003 1113 RWYLDEYQFDGFRFDGVTSM 1132 (1276)
Q Consensus 1113 ~~Wv~eygVDGFRfD~a~~L 1132 (1276)
+.+. ++|||+|.+|.....
T Consensus 137 ~~~~-~~Gvd~~K~D~~~~~ 155 (348)
T d1zy9a2 137 SSLR-KMGYRYFKIDFLFAG 155 (348)
T ss_dssp HHHH-HTTCCEEEECCGGGG
T ss_pred HHHH-hcCCCEEEeCCCCCc
Confidence 9866 589999999986544
|
| >d2f2ha4 c.1.8.13 (A:248-585) Putative glucosidase YicI, domain 2 {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: YicI catalytic domain-like domain: Putative glucosidase YicI, domain 2 species: Escherichia coli [TaxId: 562]
Probab=94.70 E-value=0.012 Score=63.85 Aligned_cols=88 Identities=11% Similarity=0.237 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHcCCEEEEEEeccccCCcccCCCcCCC-CCCCcccccCCCCCC---CCCC--CcCCCCCcHHHHHHHHHH
Q psy9003 1038 QLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFD-GTQACFFHDGPRGTH---PLWD--SRLFNYSEIEVLRFLLSN 1111 (1276)
Q Consensus 1038 EfK~LV~alHk~GI~VILDvV~NHt~~~~~~~~~~f~-g~~~~Yy~~~~~g~~---~~W~--g~~LN~~np~Vr~~Iids 1111 (1276)
+.++||+++|+.|++|++-+.+ +...+.+. |+ +....|+..+++|.. ..|. ..-+|+.||++++++.+.
T Consensus 80 dp~~~i~~l~~~G~~~~l~~~P-~i~~~~~~----~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~D~tnp~a~~w~~~~ 154 (338)
T d2f2ha4 80 DPEGMIRRLKAKGLKICVWINP-YIGQKSPV----FKELQEKGYLLKRPDGSLWQWDKWQPGLAIYDFTNPDACKWYADK 154 (338)
T ss_dssp CHHHHHHHHHHTTCEEEEEECS-EECTTSTT----HHHHHHHTCBCBCTTSSBCCBSSSSTTBEEBCTTSHHHHHHHHHH
T ss_pred CHHHHHHHHHHCCCeEEEeecC-ccCCCChh----HHHHHhCCEEEECCCCCceeeecCCCCccccccCCHHHHHHHHHH
Confidence 4689999999999999999755 34433211 11 111234444443321 2233 246799999999999999
Q ss_pred HHHHHHhCCCcEEccCCccc
Q psy9003 1112 LRWYLDEYQFDGFRFDGVTS 1131 (1276)
Q Consensus 1112 l~~Wv~eygVDGFRfD~a~~ 1131 (1276)
+...++ .|||||-+|.-..
T Consensus 155 ~~~~~~-~Gidg~w~D~~e~ 173 (338)
T d2f2ha4 155 LKGLVA-MGVDCFKTDFGER 173 (338)
T ss_dssp HHHHHH-TTCCEEEECCCCC
T ss_pred hhcccc-cCCceEEecCCCC
Confidence 998765 7999999997543
|
| >d1ji1a3 c.1.8.1 (A:123-554) Maltogenic amylase, central domain {Thermoactinomyces vulgaris, TVAI [TaxId: 2026]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Maltogenic amylase, central domain species: Thermoactinomyces vulgaris, TVAI [TaxId: 2026]
Probab=94.66 E-value=0.0087 Score=65.70 Aligned_cols=37 Identities=22% Similarity=0.241 Sum_probs=33.1
Q ss_pred ChHHHHHHHHHHHHh-cCc----------------------------CCCHHHHHHHHHHHHHcCCC
Q psy9003 143 GTPEQLKYLVDECHK-AGL----------------------------FGTPEQLKYLVDECHKAGLF 180 (1276)
Q Consensus 143 ~y~e~a~~li~y~~~-~~y----------------------------ygtp~~l~~~vd~~h~~~i~ 180 (1276)
+++.|++.| ||+|| +|. |||++||+.||++||+.|++
T Consensus 67 dl~Gi~~kL-dYl~~~LGv~~I~L~Pi~~~~~~~GY~~~d~~~id~~~Gt~~d~~~lv~~~H~~g~~ 132 (432)
T d1ji1a3 67 DLAGIDQKL-GYIKKTLGANILYLNPIFKAPTNHKYDTQDYMAVDPAFGDNSTLQTLINDIHSTANG 132 (432)
T ss_dssp CHHHHHHTH-HHHHTTTCCCEEEESCCEECSSSSCCSCSEEEEECTTTCCHHHHHHHHHHHHCSSSS
T ss_pred CHHHHHHHh-hHHHhhcCCCEEEeCCCCcCCCCCCcccccccccCcccCCHHHHHHHHHHHHHhhhh
Confidence 689999988 99998 898 89999999999999998843
|
| >d1g5aa2 c.1.8.1 (A:1-554) Amylosucrase {Neisseria polysaccharea [TaxId: 489]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Amylosucrase species: Neisseria polysaccharea [TaxId: 489]
Probab=94.22 E-value=0.01 Score=68.96 Aligned_cols=37 Identities=22% Similarity=0.311 Sum_probs=33.0
Q ss_pred ChHHHHHHHHHHHHhcCc-------------------------------CCCHHHHHHHHHHHHHcCCC
Q psy9003 143 GTPEQLKYLVDECHKAGL-------------------------------FGTPEQLKYLVDECHKAGLF 180 (1276)
Q Consensus 143 ~y~e~a~~li~y~~~~~y-------------------------------ygtp~~l~~~vd~~h~~~i~ 180 (1276)
+.+-|.++| ||+|++|. |||++||+.||++||+.||+
T Consensus 111 Dl~Gi~~kL-dYLk~LGVt~I~L~Pi~~~p~~~sd~GY~v~dy~~Vdp~lGt~edl~~Lv~~aH~rGI~ 178 (554)
T d1g5aa2 111 DLKGLKDKI-PYFQELGLTYLHLMPLFKCPEGKSDGGYAVSSYRDVNPALGTIGDLREVIAALHEAGIS 178 (554)
T ss_dssp SHHHHHTTH-HHHHHHTCSEEEECCCBCCCSSCSTTTTSCSCSSSBCTTTCCHHHHHHHHHHHHHTTCE
T ss_pred CHHHHHHhh-HHHHHcCCCEEEECCCCCCCCCCCCCCcCcccCCCCCcccCCHHHHHHHHHHHHHCCCE
Confidence 567777776 89999887 99999999999999999998
|
| >d1ceoa_ c.1.8.3 (A:) Endoglucanase CelC {Clostridium thermocellum [TaxId: 1515]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: beta-glycanases domain: Endoglucanase CelC species: Clostridium thermocellum [TaxId: 1515]
Probab=93.96 E-value=0.25 Score=52.68 Aligned_cols=103 Identities=12% Similarity=0.118 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHHcCCEEEEEEeccccCCcccCCCcCCCCCCCcccccCCCCCCCCCCCcCCCCCcHHHHHHHHHHHHHH
Q psy9003 1036 PEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSNLRWY 1115 (1276)
Q Consensus 1036 ~eEfK~LV~alHk~GI~VILDvV~NHt~~~~~~~~~~f~g~~~~Yy~~~~~g~~~~W~g~~LN~~np~Vr~~Iidsl~~W 1115 (1276)
.+.|+++|+.|.++||+||||+ |..+.... . . + ....-+.++..++...+..+..
T Consensus 68 ~~~ld~~v~~a~~~gi~vild~---H~~p~~~~-----~----~-~------------~~~~~~~~~~~~~~~~~~~~~l 122 (340)
T d1ceoa_ 68 LSYIDRCLEWCKKYNLGLVLDM---HHAPGYRF-----Q----D-F------------KTSTLFEDPNQQKRFVDIWRFL 122 (340)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEE---EECCC------------------------------CCTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCEEEEEe---cCCCcccc-----c----c-c------------ccccccccHHHHHHHHHHHHHH
Confidence 5679999999999999999998 43332100 0 0 0 0112245677788888888888
Q ss_pred HHhCCCc-E-EccCCccccccccCCCCCCCCCCCccccCCCCCchHHHHHHHHHHHHHhhCCCeEEEEE
Q psy9003 1116 LDEYQFD-G-FRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAE 1182 (1276)
Q Consensus 1116 v~eygVD-G-FRfD~a~~L~~~d~g~g~~~~~~~~~~~~~~~d~~a~~Fl~el~~~Vr~~~PdvilIAE 1182 (1276)
+++|+=. . +-++++... .+ .....-..+.+++.++||+..|+..++-+
T Consensus 123 a~ry~~~p~v~~~el~NEP------------------~~-~~~~~~~~~~~~~~~aIR~~dp~~~I~v~ 172 (340)
T d1ceoa_ 123 AKRYINEREHIAFELLNQV------------------VE-PDSTRWNKLMLECIKAIREIDSTMWLYIG 172 (340)
T ss_dssp HHHTTTCCSSEEEECCSCC------------------CC-SSSHHHHHHHHHHHHHHHHHCSSCCEEEE
T ss_pred HHhcCCCCcEEEEeeeeec------------------CC-CCHHHHHHHHHHHHHHHHhcCCCcEEEeC
Confidence 8876410 0 001111110 00 01112235788889999999999765544
|
| >d1ecea_ c.1.8.3 (A:) Endocellulase E1 {Acidothermus cellulolyticus [TaxId: 28049]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: beta-glycanases domain: Endocellulase E1 species: Acidothermus cellulolyticus [TaxId: 28049]
Probab=93.61 E-value=0.46 Score=49.99 Aligned_cols=24 Identities=21% Similarity=0.333 Sum_probs=22.1
Q ss_pred CCHHHHHHHHHHHHHcCCEEEEEE
Q psy9003 1034 GTPEQLKYLVDECHKAGLYVLLDV 1057 (1276)
Q Consensus 1034 Gt~eEfK~LV~alHk~GI~VILDv 1057 (1276)
...+.|+++|+.|+++||+||+|+
T Consensus 92 ~~~~~ld~~v~~a~~~Gl~Vildl 115 (358)
T d1ecea_ 92 TSLQVMDKIVAYAGQIGLRIILDR 115 (358)
T ss_dssp CHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred hHHHHHHHHHHHHHHCCCceeeec
Confidence 347889999999999999999998
|
| >d2pb1a1 c.1.8.3 (A:7-400) Exo-beta-(1,3)-glucanase {Yeast (Candida albicans) [TaxId: 5476]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: beta-glycanases domain: Exo-beta-(1,3)-glucanase species: Yeast (Candida albicans) [TaxId: 5476]
Probab=93.33 E-value=0.25 Score=54.31 Aligned_cols=108 Identities=18% Similarity=0.264 Sum_probs=60.2
Q ss_pred CCHHHHHHHHHHHHHcCCEEEEEEeccccCCcccCCCcCCCCCCCcccccCCCCCCCCCCCcCCCCCcHHHHHHHHHHHH
Q psy9003 1034 GTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSNLR 1113 (1276)
Q Consensus 1034 Gt~eEfK~LV~alHk~GI~VILDvV~NHt~~~~~~~~~~f~g~~~~Yy~~~~~g~~~~W~g~~LN~~np~Vr~~Iidsl~ 1113 (1276)
+..+.|+++|+.|.++||+||||+ |..+....+ ++ +.+..+ ...+.++..++..++.++
T Consensus 105 ~~~~~ld~~i~~a~~~gl~VilDl---H~~pg~~~~---~~-------~~g~~~--------~~~~~~~~~~~~~~~~~~ 163 (394)
T d2pb1a1 105 GQVQYLEKALGWARKNNIRVWIDL---HGAPGSQNG---FD-------NSGLRD--------SYNFQNGDNTQVTLNVLN 163 (394)
T ss_dssp CHHHHHHHHHHHHHHTTCEEEEEE---EECTTCSSC---CG-------GGSSTT--------CCCTTSTTHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHCCcEEEEEe---eccCCcccC---cC-------CcCccC--------ccccccHHHHHHHHHHHH
Confidence 346889999999999999999998 544432111 00 001011 112233445566666777
Q ss_pred HHHHhCC-------CcEEccCCccccccccCCCCCCCCCCCccccCCCCC-chHHHHHHHHHHHHHhhCCCeEEEEE
Q psy9003 1114 WYLDEYQ-------FDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVD-TDALIYLMVANKFLHDKYPEIITIAE 1182 (1276)
Q Consensus 1114 ~Wv~eyg-------VDGFRfD~a~~L~~~d~g~g~~~~~~~~~~~~~~~d-~~a~~Fl~el~~~Vr~~~PdvilIAE 1182 (1276)
..+++|+ |-|| |+... +. +...+ ..-..|.+++.++||+..|+..+|-.
T Consensus 164 ~ia~~~~~~~~~~~v~g~--el~NE---------P~---------~~~~~~~~~~~~~~~~~~~IR~~~~~~~I~i~ 220 (394)
T d2pb1a1 164 TIFKKYGGNEYSDVVIGI--ELLNE---------PL---------GPVLNMDKLKQFFLDGYNSLRQTGSVTPVIIH 220 (394)
T ss_dssp HHHHHHSSGGGTTTEEEE--ESCSC---------CC---------GGGSCHHHHHHHHHHHHHHHHHTTCCCCEEEE
T ss_pred HHHHHHccCCCCCceEEE--eeccc---------CC---------cccccHHHHHHHHHHHHHHHHHhCCCCeEEEc
Confidence 7677654 2222 21110 00 00111 12346788899999999999855443
|
| >d1edta_ c.1.8.5 (A:) Endo-beta-N-acetylglucosaminidase {Streptomyces plicatus, endoglycosidase H [TaxId: 1922]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Type II chitinase domain: Endo-beta-N-acetylglucosaminidase species: Streptomyces plicatus, endoglycosidase H [TaxId: 1922]
Probab=93.12 E-value=0.15 Score=53.66 Aligned_cols=63 Identities=21% Similarity=0.358 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHcCCEEEEEEeccccCCcccCCCcCCCCCCCcccccCCCCCCCCCCCcCCCCCcHHHHHHHHHHHHHH
Q psy9003 1036 PEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSNLRWY 1115 (1276)
Q Consensus 1036 ~eEfK~LV~alHk~GI~VILDvV~NHt~~~~~~~~~~f~g~~~~Yy~~~~~g~~~~W~g~~LN~~np~Vr~~Iidsl~~W 1115 (1276)
..++.+.|+.||++||+|+|=+==+|.+.. | -+...++-|+.+++++..+
T Consensus 64 ~~~~~~~i~~l~~~g~KvllsiGG~~~~~~--------------------------f----~~~~s~~~~~~Fa~~~~~~ 113 (265)
T d1edta_ 64 LDNAVTQIRPLQQQGIKVLLSVLGNHQGAG--------------------------F----ANFPSQQAASAFAKQLSDA 113 (265)
T ss_dssp HHTHHHHTHHHHHTTCEEEEEEEECTTSCC--------------------------T----TCCSSHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHhCCCEEEEEEccCcCCCC--------------------------c----eecCCHHHHHHHHHHHHHH
Confidence 346778899999999999998743332221 0 0133577788888999999
Q ss_pred HHhCCCcEEccCC
Q psy9003 1116 LDEYQFDGFRFDG 1128 (1276)
Q Consensus 1116 v~eygVDGFRfD~ 1128 (1276)
++.|++||+-||-
T Consensus 114 ~~~~~~DGiDiD~ 126 (265)
T d1edta_ 114 VAKYGLDGVDFDD 126 (265)
T ss_dssp HHHHTCCEEEEEC
T ss_pred HHhcCCCceEecc
Confidence 9999999999995
|
| >d1iv8a2 c.1.8.1 (A:1-653) Maltooligosyl trehalose synthase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Maltooligosyl trehalose synthase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=92.47 E-value=0.028 Score=66.69 Aligned_cols=38 Identities=18% Similarity=0.337 Sum_probs=34.3
Q ss_pred CChHHHHHHHHHHHHhcCc------------------------------CCCHHHHHHHHHHHHHcCCC
Q psy9003 142 FGTPEQLKYLVDECHKAGL------------------------------FGTPEQLKYLVDECHKAGLF 180 (1276)
Q Consensus 142 ~~y~e~a~~li~y~~~~~y------------------------------ygtp~~l~~~vd~~h~~~i~ 180 (1276)
+++..+++ .+||+|++|. |||.+||+.||++||++||+
T Consensus 14 ftF~~~~~-~LpYL~~LGVs~IyLsPi~~a~~gS~HGYDv~D~~~Vdp~lGt~edf~~LV~aaH~~Gm~ 81 (653)
T d1iv8a2 14 FNFGDVID-NLWYFKDLGVSHLYLSPVLMASPGSNHGYDVIDHSRINDELGGEKEYRRLIETAHTIGLG 81 (653)
T ss_dssp BCHHHHHH-THHHHHHHTCCEEEECCCEEECTTCSSCCSEEEEEEECTTTTHHHHHHHHHHHHHHTTCE
T ss_pred CCHHHHHH-hhHHHHHCCCCEEEECccCCCCCCCCCCccccCccccchhcCCHHHHHHHHHHHHHCCCE
Confidence 38888875 5899999998 99999999999999999998
|
| >d1ur4a_ c.1.8.3 (A:) Beta-1,4-galactanase {Bacillus licheniformis [TaxId: 1402]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: beta-glycanases domain: Beta-1,4-galactanase species: Bacillus licheniformis [TaxId: 1402]
Probab=92.19 E-value=0.32 Score=53.30 Aligned_cols=24 Identities=17% Similarity=0.174 Sum_probs=22.1
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEEe
Q psy9003 1035 TPEQLKYLVDECHKAGLYVLLDVV 1058 (1276)
Q Consensus 1035 t~eEfK~LV~alHk~GI~VILDvV 1058 (1276)
..+.++++++.|+++||+||+|+-
T Consensus 77 ~l~~~~~~~~~a~~~Gl~v~ldlH 100 (387)
T d1ur4a_ 77 DLEKAIQIGKRATANGMKLLADFH 100 (387)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEEEC
T ss_pred cHHHHHHHHHHHHHCCCEEEEEeC
Confidence 478999999999999999999983
|
| >d1rh9a1 c.1.8.3 (A:30-399) Beta-mannanase {Tomato (Lycopersicon esculentum) [TaxId: 4081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: beta-glycanases domain: Beta-mannanase species: Tomato (Lycopersicon esculentum) [TaxId: 4081]
Probab=92.12 E-value=0.26 Score=51.48 Aligned_cols=128 Identities=11% Similarity=0.109 Sum_probs=67.5
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEEeccccCCcccCCCcCCCCCCCcccccCCCCCCCCCCCcCCCCCcHHHHHHHHHHHHH
Q psy9003 1035 TPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSNLRW 1114 (1276)
Q Consensus 1035 t~eEfK~LV~alHk~GI~VILDvV~NHt~~~~~~~~~~f~g~~~~Yy~~~~~g~~~~W~g~~LN~~np~Vr~~Iidsl~~ 1114 (1276)
..+.|+++|+.|.++||+||+|+...-.... +.. ....|...... ........+.+|.+++.+.+.++.
T Consensus 80 ~l~~ld~~l~~a~~~Gi~vi~~l~~~~~~~~---~~~----~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 148 (370)
T d1rh9a1 80 MFQGLDFVISEAKKYGIHLIMSLVNNWDAFG---GKK----QYVEWAVQRGQ----KLTSDDDFFTNPMVKGFYKNNVKV 148 (370)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEECCBSSSSSS---BHH----HHHHHHHHTTC----CCCCGGGGGTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCEEEEeccccccccc---CCc----ccccccccCCC----cCCccccccCCHHHHHHHHHHHHH
Confidence 3688999999999999999999853211111 000 00011111100 111234557789999999999999
Q ss_pred HHHhCCC-cE--EccCCccccccccCCCCCCCCCCCccccCCCCCc-hHHHHHHHHHHHHHhhCCCeEEEEEc
Q psy9003 1115 YLDEYQF-DG--FRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDT-DALIYLMVANKFLHDKYPEIITIAED 1183 (1276)
Q Consensus 1115 Wv~eygV-DG--FRfD~a~~L~~~d~g~g~~~~~~~~~~~~~~~d~-~a~~Fl~el~~~Vr~~~PdvilIAE~ 1183 (1276)
.++++.- .+ ||=+ ...+.+ +....+. .+...+. .-..+++.+.+.||+..|+..++.+.
T Consensus 149 ~v~r~~~~~~~~~~~~-~~v~~~-------~l~NEp~--~~~~~~~~~~~~~~~~~~~~ir~~dp~~~v~~~~ 211 (370)
T d1rh9a1 149 VLTRVNTITKVAYKDD-PTILSW-------ELINEPR--CPSDLSGKTFQNWVLEMAGYLKSIDSNHLLEIGL 211 (370)
T ss_dssp HHHCBCTTTCSBGGGC-TTEEEE-------ESCBSCC--CTTCTTSHHHHHHHHHHHHHHHHHCCSSEEECCC
T ss_pred HHHhhhhhhHhhhcCC-ceeeee-------ccccccc--cCCccchHHHHHHHHHHHHHHHhhCCCCeEEEec
Confidence 8885321 00 0100 000000 0000000 0111112 23457888889999999998776553
|
| >d1h4pa_ c.1.8.3 (A:) Exo-beta-(1,3)-glucanase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: beta-glycanases domain: Exo-beta-(1,3)-glucanase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.71 E-value=0.47 Score=52.54 Aligned_cols=64 Identities=23% Similarity=0.415 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHcCCEEEEEEeccccCCcccCCCcCCCCCCCcccccCCCCCCCCCCCcCCCCCcHHHHHHHHHHHHHH
Q psy9003 1036 PEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSNLRWY 1115 (1276)
Q Consensus 1036 ~eEfK~LV~alHk~GI~VILDvV~NHt~~~~~~~~~~f~g~~~~Yy~~~~~g~~~~W~g~~LN~~np~Vr~~Iidsl~~W 1115 (1276)
.+-|+++|+.|.++||+||||+ |..+....+ ++ +.+..+ ...+.++.-++..++.+++.
T Consensus 113 ~~~ld~~v~~a~~~gl~VilDl---H~~pG~~~~---~~-------~~~~~~--------~~~~~~~~~~~~~~~~~~~i 171 (408)
T d1h4pa_ 113 ESYLDQAIGWARNNSLKVWVDL---HGAAGSQNG---FD-------NSGLRD--------SYKFLEDSNLAVTINVLNYI 171 (408)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEE---EECTTCSSC---CG-------GGSSTT--------CCCTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCEEEEEe---CCCCCCCcC---CC-------CCCccc--------ccccCCchHHHHHHHHHHHH
Confidence 5679999999999999999998 655542211 10 001000 11233456677778888888
Q ss_pred HHhCC
Q psy9003 1116 LDEYQ 1120 (1276)
Q Consensus 1116 v~eyg 1120 (1276)
+++|+
T Consensus 172 a~r~~ 176 (408)
T d1h4pa_ 172 LKKYS 176 (408)
T ss_dssp HHHTT
T ss_pred HHHhc
Confidence 88875
|
| >d1vjza_ c.1.8.3 (A:) Endoglucanase homologue TM1752 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: beta-glycanases domain: Endoglucanase homologue TM1752 species: Thermotoga maritima [TaxId: 2336]
Probab=89.76 E-value=1.9 Score=44.43 Aligned_cols=23 Identities=13% Similarity=0.147 Sum_probs=21.2
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEE
Q psy9003 1035 TPEQLKYLVDECHKAGLYVLLDV 1057 (1276)
Q Consensus 1035 t~eEfK~LV~alHk~GI~VILDv 1057 (1276)
..+-++++|++|.++||+||||+
T Consensus 59 ~l~~ld~~v~~~~~~gi~vildl 81 (325)
T d1vjza_ 59 FFEKIDRVIFWGEKYGIHICISL 81 (325)
T ss_dssp GHHHHHHHHHHHHHHTCEEEEEE
T ss_pred HHHHHHHHHHHHHHcCCcEEEee
Confidence 36789999999999999999998
|
| >d1foba_ c.1.8.3 (A:) Beta-1,4-galactanase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: beta-glycanases domain: Beta-1,4-galactanase species: Fungus (Aspergillus aculeatus) [TaxId: 5053]
Probab=89.38 E-value=0.28 Score=53.14 Aligned_cols=69 Identities=13% Similarity=0.164 Sum_probs=46.9
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEEeccccCCcccCCCcCCCCCCCcccccCCCCCCCCCCCcCCCCCcHHHHHHHHHHHHH
Q psy9003 1035 TPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSNLRW 1114 (1276)
Q Consensus 1035 t~eEfK~LV~alHk~GI~VILDvV~NHt~~~~~~~~~~f~g~~~~Yy~~~~~g~~~~W~g~~LN~~np~Vr~~Iidsl~~ 1114 (1276)
..+..+++++.++++||+|++|+.+..+..+. ........|.+.++..-...+.++..+++..
T Consensus 58 ~~~~~~~~~~~a~~~Gm~vll~~hysd~Wadp-----------------~~q~~P~aw~~~~~~~~~~~~~~~t~~v~~~ 120 (334)
T d1foba_ 58 DLDYNLELAKRVKAAGMSLYLDLHLSDTWADP-----------------SDQTTPSGWSTTDLGTLKWQLYNYTLEVCNT 120 (334)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEEECCSSSCCBT-----------------TBCBCCTTSCSSCHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHCCCEEEEEecCCCcccCC-----------------CcCCCcccccccccccHHHHHHHHHHHHHHH
Confidence 46889999999999999999999776443321 1112234565544444456777888888888
Q ss_pred HHHhCCC
Q psy9003 1115 YLDEYQF 1121 (1276)
Q Consensus 1115 Wv~eygV 1121 (1276)
..+ +++
T Consensus 121 ~k~-~~~ 126 (334)
T d1foba_ 121 FAE-NDI 126 (334)
T ss_dssp HHH-TTC
T ss_pred HHh-cCC
Confidence 666 454
|
| >d2aama1 c.1.8.15 (A:28-312) Hypothetical protein TM1410 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: TM1410-like domain: Hypothetical protein TM1410 species: Thermotoga maritima [TaxId: 2336]
Probab=88.76 E-value=0.13 Score=54.89 Aligned_cols=84 Identities=17% Similarity=0.363 Sum_probs=57.9
Q ss_pred CCCCC-CcCCCCCcHHHHHHHHHHHHHHHHhCCCcEEccCCccccccccCCCCCCCCCCCccccCCCCCchHHHHHHHHH
Q psy9003 1089 HPLWD-SRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVAN 1167 (1276)
Q Consensus 1089 ~~~W~-g~~LN~~np~Vr~~Iidsl~~Wv~eygVDGFRfD~a~~L~~~d~g~g~~~~~~~~~~~~~~~d~~a~~Fl~el~ 1167 (1276)
.++|. ..-+|..+|+.|++|..-+..-++ .|+|||=+|.+....+.......++. ..-.+-+.|+++|.
T Consensus 91 ~~~W~~~~~vd~~~~~w~~il~~ri~~~~~-~GfDGvflD~lD~y~~~~~~~~~~~~---------~~~~~m~~~v~~I~ 160 (285)
T d2aama1 91 DPAWPGNYFVKYWYNEWKEIVFSYLDRVID-QGFKGIYLDRIDSFEYWAQEGVISRR---------SAARKMINFVLEIA 160 (285)
T ss_dssp ETTEEEEEEECTTSHHHHHHHHHHHHHHHH-TTCSEEEEECTTHHHHHHHHTSSCHH---------HHHHHHHHHHHHHH
T ss_pred CCCCCCCeeEecCcHHHHHHHHHHHHHHHH-cCCCeEEecccchhhhhcccCCCcch---------hHHHHHHHHHHHHH
Confidence 56785 456899999999999999888666 69999999987654211000000000 00123367899999
Q ss_pred HHHHhhCCCeEEEEE
Q psy9003 1168 KFLHDKYPEIITIAE 1182 (1276)
Q Consensus 1168 ~~Vr~~~PdvilIAE 1182 (1276)
+.+|+.+|+..+|.-
T Consensus 161 ~~~r~~~P~~~ii~n 175 (285)
T d2aama1 161 EYVRERKPDMLIIPQ 175 (285)
T ss_dssp HHHHHHCTTCEEEEB
T ss_pred HHHHHhCCCCEEEEc
Confidence 999999999988865
|
| >d1hjsa_ c.1.8.3 (A:) Beta-1,4-galactanase {Thielavia heterothallica, aka Myceliophthora thermophila [TaxId: 78579]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: beta-glycanases domain: Beta-1,4-galactanase species: Thielavia heterothallica, aka Myceliophthora thermophila [TaxId: 78579]
Probab=88.56 E-value=0.36 Score=50.44 Aligned_cols=25 Identities=20% Similarity=0.165 Sum_probs=22.3
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEEec
Q psy9003 1035 TPEQLKYLVDECHKAGLYVLLDVVH 1059 (1276)
Q Consensus 1035 t~eEfK~LV~alHk~GI~VILDvV~ 1059 (1276)
..+.++++|+.|+++||+||+|+.+
T Consensus 58 ~~~~~~~~v~~a~~~gl~vil~~h~ 82 (332)
T d1hjsa_ 58 NLDYNIAIAKRAKAAGLGVYIDFHY 82 (332)
T ss_dssp SHHHHHHHHHHHHHTTCEEEEEECC
T ss_pred CHHHHHHHHHHHHHCCCEEEEEecC
Confidence 4678999999999999999999854
|
| >d2fhfa5 c.1.8.1 (A:403-965) Pullulanase PulA {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Pullulanase PulA species: Klebsiella pneumoniae [TaxId: 573]
Probab=88.14 E-value=0.05 Score=60.92 Aligned_cols=47 Identities=11% Similarity=-0.114 Sum_probs=34.3
Q ss_pred ccccccCC------------ChHHHHHHH------HHHHHhcCc-------------------------------CCCHH
Q psy9003 135 ECHKAGLF------------GTPEQLKYL------VDECHKAGL-------------------------------FGTPE 165 (1276)
Q Consensus 135 e~h~gs~~------------~y~e~a~~l------i~y~~~~~y-------------------------------ygtp~ 165 (1276)
|||.+||. +|..+++.+ ++|||+.|. +|+-.
T Consensus 26 ei~vr~F~d~~~d~~~~~~G~f~~~~~~~~~~i~~LdyL~~LGVtaiwL~Pi~~~~~~d~~~~~~~~~~~~~~~~~~~~~ 105 (563)
T d2fhfa5 26 ESHIRDLSAWDQTVPAELRGKYLALTAQESNMVQHLKQLSASGVTHIELLPVFDLATVNEFSDKVADIQQPFSRLCEVNS 105 (563)
T ss_dssp EECHHHHHTTCTTSCGGGTTSGGGGGCTTSHHHHHHHHHHHHTCCEEEESCCEEESSSCCCGGGCCCTTSBHHHHHHHCH
T ss_pred EecchhhhccCCCCccccCcChhhccccCcchhhhHHHHHHcCCCEEEeCCcccCCcccccccccccccccccccccccc
Confidence 88887763 676654432 599999887 45667
Q ss_pred HHHHHHHHHHHcCCCC
Q psy9003 166 QLKYLVDECHKAGLFG 181 (1276)
Q Consensus 166 ~l~~~vd~~h~~~i~~ 181 (1276)
++..++..+|..||+.
T Consensus 106 ~~~~~~~~~~~~~~~~ 121 (563)
T d2fhfa5 106 AVKSSEFAGYCDSGST 121 (563)
T ss_dssp HHHTSTTGGGTTSSCB
T ss_pred ccchhhhhhhccccch
Confidence 7888888888888873
|
| >d1qhoa2 b.3.1.1 (A:577-686) Cyclodextrin glycosyltransferase, C-terminal domain {Bacillus stearothermophilus, maltogenic alpha-amylase [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Prealbumin-like superfamily: Starch-binding domain-like family: Starch-binding domain domain: Cyclodextrin glycosyltransferase, C-terminal domain species: Bacillus stearothermophilus, maltogenic alpha-amylase [TaxId: 1422]
Probab=87.70 E-value=0.36 Score=44.24 Aligned_cols=50 Identities=24% Similarity=0.365 Sum_probs=38.9
Q ss_pred cEEEEEEccCC----ceEEEEeecc-CCCcc------e-------------EEEEEccCccccce--EEEEEecCCC
Q psy9003 74 SVRCFEWAPSA----QQLYLTGNVS-LTPWS------I-------------MEEASLSSIKLIQS--IQYILTGVFG 124 (1276)
Q Consensus 74 g~~f~~wAP~A----~~v~l~gdfn-~~~w~------m-------------~~~~~~~~~~~g~~--yky~i~~~~g 124 (1276)
.|+|++=+|.- +.|+|+|+.. ..+|+ | +|++.| .+..|.. |||.|...+|
T Consensus 7 ~V~f~v~~~~~T~~Gq~v~ivG~~~~LG~W~~~~a~~l~~~~~~~~~~~~~~W~~~v-~lp~~~~~eYKyvi~~~~g 82 (110)
T d1qhoa2 7 SVVFTVKSAPPTNLGDKIYLTGNIPELGNWSTDTSGAVNNAQGPLLAPNYPDWFYVF-SVPAGKTIQFKFFIKRADG 82 (110)
T ss_dssp EEEEEEESCCCCCTTCEEEEEESSGGGTTTCCCCSSCSSCCBCCCBCTTTTSEEEEE-EEETTCEEEEEEEEECTTS
T ss_pred EEEEEEeCcccCCCCCEEEEEeCcHHHCCCChhhccccccccCccccccCCeEEEEE-EECCCCEEEEEEEEEcCCC
Confidence 68999988753 7899999987 66776 3 599887 4567776 8888887777
|
| >d1x1na1 c.1.8.1 (A:2-524) Amylomaltase MalQ {Potato (Solanum tuberosum) [TaxId: 4113]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Amylomaltase MalQ species: Potato (Solanum tuberosum) [TaxId: 4113]
Probab=87.60 E-value=0.28 Score=56.45 Aligned_cols=140 Identities=20% Similarity=0.273 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHHcCCEEEEEEec--cccCCcccCCCcCC-----------CCCCCcccccCCCCCCCCCCCcCCCCCcHH
Q psy9003 1037 EQLKYLVDECHKAGLYVLLDVVH--SHASKNVLDGLNEF-----------DGTQACFFHDGPRGTHPLWDSRLFNYSEIE 1103 (1276)
Q Consensus 1037 eEfK~LV~alHk~GI~VILDvV~--NHt~~~~~~~~~~f-----------~g~~~~Yy~~~~~g~~~~W~g~~LN~~np~ 1103 (1276)
++++++-+.|+++||+++.|+-+ +|-+.+.......| -|..|++|.. .| .+|+.+.+|++.-.
T Consensus 221 ~Q~~~~~~~A~~~Gi~L~gDlpi~V~~dsaDvW~~~~lF~l~~~~~~~~~~GaPPD~Fs~--~G--Q~WG~P~y~w~~l~ 296 (523)
T d1x1na1 221 RQWKKVRDYARSKGISIMGDMPIYVGYHSADVWANKKQFLLNRKGFPLIVSGVPPDAFSE--TG--QLWGSPLYDWKAME 296 (523)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEESSCCSSSHHHHTCGGGBCBCTTSCBSEEEEBCCSSSSS--CC--BCCCCBCBCHHHHH
T ss_pred HHHHHHHHHHHhhCCceEEeeeeeecCCchhhhcCchhhhccccCCCccccCCCCCCCCc--cc--cccCCCCCCHHHHh
Confidence 45788888999999999999987 44333321111111 2444666643 33 57887777754211
Q ss_pred H--HHHHHHHHHHHHHhCCCcEEccCCccccccccCCCCCCCC-CCCccccCCCCCchHHHHHHHHHHHHHhhCCCeEEE
Q psy9003 1104 V--LRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFS-GHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITI 1180 (1276)
Q Consensus 1104 V--r~~Iidsl~~Wv~eygVDGFRfD~a~~L~~~d~g~g~~~~-~~~~~~~~~~~d~~a~~Fl~el~~~Vr~~~PdvilI 1180 (1276)
- -+..++-++.=++ .+|++|+|-+..+.+. +..+ +......|.-.....-.++. ++.+..+++.+|
T Consensus 297 ~~gy~ww~~rlr~~~~--~~d~lRIDH~~Gf~r~-----W~iP~~~~~a~~G~~~~~p~~~l~~----~l~~~~~~~~vi 365 (523)
T d1x1na1 297 KDGFSWWVRRIQRATD--LFDEFRIDHFRGFAGF-----WAVPSEEKIAILGRWKVGPGKPLFD----AILQAVGKINII 365 (523)
T ss_dssp HTTSHHHHHHHHHHHH--HCSEEEEETGGGGTEE-----EEEETTCSSSSSCEEEECCCHHHHH----HHHHHHCCCEEE
T ss_pred ccchHHHHHHHHHHHH--hCCeeeehhHHHHHHH-----hccccCCCccccCccccccHHHHHH----HHHHHcCCCceE
Confidence 1 1345566666566 5789999976554321 0000 00000011101111123443 344455789999
Q ss_pred EEccCCCCCCc
Q psy9003 1181 AEDVSGMPASC 1191 (1276)
Q Consensus 1181 AE~~s~~p~~~ 1191 (1276)
||+.+.-|.-.
T Consensus 366 gEDLG~vp~~v 376 (523)
T d1x1na1 366 AEDLGVITEDV 376 (523)
T ss_dssp ECCCSSCCHHH
T ss_pred ehhhccCCHHH
Confidence 99987766543
|
| >d2ebna_ c.1.8.5 (A:) Endo-beta-N-acetylglucosaminidase {Flavobacterium meningosepticum, endoglycosidase F1 [TaxId: 238]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Type II chitinase domain: Endo-beta-N-acetylglucosaminidase species: Flavobacterium meningosepticum, endoglycosidase F1 [TaxId: 238]
Probab=87.44 E-value=1.8 Score=45.31 Aligned_cols=62 Identities=18% Similarity=0.277 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHcCCEEEEEEeccccCCcccCCCcCCCCCCCcccccCCCCCCCCCCCcCCCCCcHHHHHHHHHHHHHH
Q psy9003 1036 PEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSNLRWY 1115 (1276)
Q Consensus 1036 ~eEfK~LV~alHk~GI~VILDvV~NHt~~~~~~~~~~f~g~~~~Yy~~~~~g~~~~W~g~~LN~~np~Vr~~Iidsl~~W 1115 (1276)
.+++...|+.||++||+|+|=+==+|.+.. |. .+ +++-|+.+.+++.-.
T Consensus 66 ~~~~~~~i~~~q~~g~KvllsigG~~~~~~--------------------------~~--~~---~~~~~~~F~~~~~~~ 114 (285)
T d2ebna_ 66 LTNRAKYLKPLQDKGIKVILSILGNHDRSG--------------------------IA--NL---STARAKAFAQELKNT 114 (285)
T ss_dssp HHTHHHHTHHHHHTTCEEEEEEECCSSSCC--------------------------TT--CB---CHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHhCCCEEEEEeccCCCCcc--------------------------cc--cC---CHHHHHHHHHHHHHH
Confidence 456788999999999999998844332211 00 11 466788888888889
Q ss_pred HHhCCCcEEccCC
Q psy9003 1116 LDEYQFDGFRFDG 1128 (1276)
Q Consensus 1116 v~eygVDGFRfD~ 1128 (1276)
+++|+.||+-+|-
T Consensus 115 ~~~y~lDGiDiD~ 127 (285)
T d2ebna_ 115 CDLYNLDGVFFDD 127 (285)
T ss_dssp HHHHTCCEEEEEC
T ss_pred HHHcCCcEEeccc
Confidence 9999999999994
|
| >d1qnra_ c.1.8.3 (A:) Beta-mannanase {Trichoderma reesei [TaxId: 51453]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: beta-glycanases domain: Beta-mannanase species: Trichoderma reesei [TaxId: 51453]
Probab=84.40 E-value=1.2 Score=46.22 Aligned_cols=115 Identities=9% Similarity=0.125 Sum_probs=62.6
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEEeccccCCcccCCCcCCCCCCCcccccCCCCCCCCCCCcCCCCCcHHHHHHHHHHHHH
Q psy9003 1035 TPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSNLRW 1114 (1276)
Q Consensus 1035 t~eEfK~LV~alHk~GI~VILDvV~NHt~~~~~~~~~~f~g~~~~Yy~~~~~g~~~~W~g~~LN~~np~Vr~~Iidsl~~ 1114 (1276)
..+.+..++++|+++||+||+|+.-. .+.. . +. +.|... .+.....-+.+|.+++...+.++.
T Consensus 88 ~~~~ld~~~~~a~~~Gi~vi~~l~~~-~~~~--~------~~-~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~ 150 (344)
T d1qnra_ 88 GLQTLDYVVQSAEQHNLKLIIPFVNN-WSDY--G------GI-NAYVNA-------FGGNATTWYTNTAAQTQYRKYVQA 150 (344)
T ss_dssp TTHHHHHHHHHHHHHTCEEEEESCBS-SSTT--S------HH-HHHHHH-------HCSCTTGGGGCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCeeEeeccCC-cccc--c------cc-cccccc-------cccccccccCCHHHHHHHHHHHHH
Confidence 35789999999999999999998632 1110 0 00 000000 000012235678888888888888
Q ss_pred HHHhCCCcEEccCCccccccccCCCCCCCCCCCccccCCCCCchHHHHHHHHHHHHHhhCCCeEEEE
Q psy9003 1115 YLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIA 1181 (1276)
Q Consensus 1115 Wv~eygVDGFRfD~a~~L~~~d~g~g~~~~~~~~~~~~~~~d~~a~~Fl~el~~~Vr~~~PdvilIA 1181 (1276)
.+++|.=+ ...+.+. -...+.+ ..........+++++.+.+|+..|+..++.
T Consensus 151 ~~~r~~~~------p~v~~~~-l~NEp~~--------~~~~~~~~~~~~~~~~~~ir~~d~~~~v~~ 202 (344)
T d1qnra_ 151 VVSRYANS------TAIFAWE-LGNEPRC--------NGCSTDVIVQWATSVSQYVKSLDSNHLVTL 202 (344)
T ss_dssp HHHHHTTC------TTEEEEE-SCBSCCC--------TTCCTHHHHHHHHHHHHHHHHHCSSSEEEC
T ss_pred HHHHhCCC------Cceeeec-cCCccCC--------CCCchhhhhHHHHHHHHHHHhhCCCCEEEE
Confidence 88864211 1111100 0000000 011122345678888999999999875543
|
| >d1tz7a1 c.1.8.1 (A:1-485) Amylomaltase MalQ {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Amylomaltase MalQ species: Aquifex aeolicus [TaxId: 63363]
Probab=81.84 E-value=0.75 Score=52.36 Aligned_cols=140 Identities=22% Similarity=0.305 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHHcCCEEEEEEeccccCCcc-cC-C--CcCCC---------CCCCcccccCCCCCCCCCCCcCCCCCcHH
Q psy9003 1037 EQLKYLVDECHKAGLYVLLDVVHSHASKNV-LD-G--LNEFD---------GTQACFFHDGPRGTHPLWDSRLFNYSEIE 1103 (1276)
Q Consensus 1037 eEfK~LV~alHk~GI~VILDvV~NHt~~~~-~~-~--~~~f~---------g~~~~Yy~~~~~g~~~~W~g~~LN~~np~ 1103 (1276)
++++++-+.|+++||++|.|+.+.=...+. .| . +...+ |..|++|.. .| .+|+.+.+|+..-.
T Consensus 187 ~Q~~~~~~~a~~~gI~L~gDLpigv~~dsaDvW~~~~lF~l~~~~~~~~~~GaPPD~Fs~--~G--Q~WG~P~y~w~~l~ 262 (485)
T d1tz7a1 187 KQWEKLRRYARERGISIVGDLPMYPSYSSADVWTNPELFKLDGDLKPLFVAGVPPDFFSK--TG--QLWGNPVYNWEEHE 262 (485)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECSSCCSSSHHHHHCGGGBCBCTTSCBSEEEEECCCSSSS--SC--EEEEEECBCHHHHH
T ss_pred HHHHHHHHHHHhcCCeeeeeccccCCCChhhhhcCHHHhhcCCccCcceeecCCCCCCCc--cc--ccCCCCCcCHHHHh
Confidence 567888889999999999999876332221 11 1 11112 444566643 23 46776666653211
Q ss_pred H--HHHHHHHHHHHHHhCCCcEEccCCccccccc---cCCCCCCCCCCCccccCCCCCchHHHHHHHHHHHHHhhCCCeE
Q psy9003 1104 V--LRFLLSNLRWYLDEYQFDGFRFDGVTSMLYH---NHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEII 1178 (1276)
Q Consensus 1104 V--r~~Iidsl~~Wv~eygVDGFRfD~a~~L~~~---d~g~g~~~~~~~~~~~~~~~d~~a~~Fl~el~~~Vr~~~Pdvi 1178 (1276)
- -+.+++-+++=++ ..|++|+|-+..+.+. +.+....-. |.-+....-.+++ .+.+..++..
T Consensus 263 ~~gy~ww~~rl~~~~~--~~d~lRIDH~~Gf~r~W~iP~g~~~a~~-------G~~v~~p~~~l~~----~l~~~~~~~~ 329 (485)
T d1tz7a1 263 KEGFRWWIRRVLHNLK--LFDFLRLDHFRGFEAYWEVPYGEETAVN-------GRWVKAPGKTLFK----KLLSYFPKNP 329 (485)
T ss_dssp HTTTHHHHHHHHHHHT--TCSEEEETTGGGGTEEEEEETTCSSSTT-------CEEEECCHHHHHH----HHHHHSTTCC
T ss_pred hcCcHHHHHHHHHHHH--hcchHHHHHHHHHHHhhcccCCCCCccc-------ccccccCHHHHHH----HHHHHcCCCc
Confidence 1 1345566666455 6889999976554321 001000001 1111122333444 3456778899
Q ss_pred EEEEccCCCCCCccc
Q psy9003 1179 TIAEDVSGMPASCRP 1193 (1276)
Q Consensus 1179 lIAE~~s~~p~~~~p 1193 (1276)
+|||+.+.-|.-.+.
T Consensus 330 iigEDLG~vp~~vr~ 344 (485)
T d1tz7a1 330 FIAEDLGFITDEVRY 344 (485)
T ss_dssp EEECCCSSCCHHHHH
T ss_pred eeccchhhcCHHHHH
Confidence 999998776654433
|
| >d1eoka_ c.1.8.5 (A:) Endo-beta-N-acetylglucosaminidase {Flavobacterium meningosepticum, endoglycosidase F3 [TaxId: 238]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Type II chitinase domain: Endo-beta-N-acetylglucosaminidase species: Flavobacterium meningosepticum, endoglycosidase F3 [TaxId: 238]
Probab=81.75 E-value=0.71 Score=47.46 Aligned_cols=69 Identities=16% Similarity=0.220 Sum_probs=49.2
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEEEeccccCCcccCCCcCCCCCCCcccccCCCCCCCCCCCcCCCCCcHHHHHHHHH
Q psy9003 1031 GLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLS 1110 (1276)
Q Consensus 1031 ~~~Gt~eEfK~LV~alHk~GI~VILDvV~NHt~~~~~~~~~~f~g~~~~Yy~~~~~g~~~~W~g~~LN~~np~Vr~~Iid 1110 (1276)
..+-..++|+.-|.+||++|++|+|-+=-.+.... +... .....+++...
T Consensus 53 ~~~~~~~~~~~~i~~~q~~g~kVllSiGG~~~~~~---------------~~~~---------------~~~~~~~~~~~ 102 (282)
T d1eoka_ 53 GSFKSYKDLDTQIRSLQSRGIKVLQNIDDDVSWQS---------------SKPG---------------GFASAAAYGDA 102 (282)
T ss_dssp TTCSSHHHHHHHHHHHHTTTCEEEEEEECCGGGGS---------------SSGG---------------GSSSHHHHHHH
T ss_pred ecccchhHHHHHHHHHhhcCceEEEEEecCCCCCc---------------cCCc---------------cHHHHHHHHHH
Confidence 44567899999999999999999998732211000 0000 01136778888
Q ss_pred HHHHHHHhCCCcEEccCCc
Q psy9003 1111 NLRWYLDEYQFDGFRFDGV 1129 (1276)
Q Consensus 1111 sl~~Wv~eygVDGFRfD~a 1129 (1276)
++...+++|++|||=||.-
T Consensus 103 ~~~~~i~~yglDGiDiD~E 121 (282)
T d1eoka_ 103 IKSIVIDKWKLDGISLDIE 121 (282)
T ss_dssp HHHHHTTTTCCCEEEEECC
T ss_pred HHHHHHHHhCCCceeeccc
Confidence 8888999999999999964
|
| >d1x7fa2 c.1.8.12 (A:1-244) Outer surface protein, N-terminal domain {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Outer surface protein, N-terminal domain domain: Outer surface protein, N-terminal domain species: Bacillus cereus [TaxId: 1396]
Probab=81.68 E-value=0.71 Score=48.15 Aligned_cols=25 Identities=20% Similarity=0.416 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHcCCEEEEEEecc
Q psy9003 1036 PEQLKYLVDECHKAGLYVLLDVVHS 1060 (1276)
Q Consensus 1036 ~eEfK~LV~alHk~GI~VILDvV~N 1060 (1276)
.+.|+++++.||+.||+||.||.++
T Consensus 49 ~~~~~~l~~~a~~~g~~vi~DIsp~ 73 (244)
T d1x7fa2 49 VAEFKEIINHAKDNNMEVILDVAPA 73 (244)
T ss_dssp -HHHHHHHHHHHHTTCEEEEEECTT
T ss_pred HHHHHHHHHHHHHCCCEEEEEcCHH
Confidence 5789999999999999999999877
|
| >d2c0ha1 c.1.8.3 (A:18-367) endo-1,4-beta-mannosidase {Blue mussel (Mytilus edulis) [TaxId: 6550]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: beta-glycanases domain: endo-1,4-beta-mannosidase species: Blue mussel (Mytilus edulis) [TaxId: 6550]
Probab=81.24 E-value=1.1 Score=45.43 Aligned_cols=25 Identities=0% Similarity=0.228 Sum_probs=22.2
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEEec
Q psy9003 1035 TPEQLKYLVDECHKAGLYVLLDVVH 1059 (1276)
Q Consensus 1035 t~eEfK~LV~alHk~GI~VILDvV~ 1059 (1276)
..+.++++|+.|.++||.||+|+..
T Consensus 86 ~~~~~d~~~~~a~~~gi~vi~d~~~ 110 (350)
T d2c0ha1 86 LISDMRAYLHAAQRHNILIFFTLWN 110 (350)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEEEE
T ss_pred hhHHHHHHHHHHHHCCCEEEEEecc
Confidence 3688999999999999999999843
|