Psyllid ID: psy9009

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------26
Protein Sequence
MGGWHNTDFKSSLTNRSVALTWVMFQSNRAGKMRTNGIFLFLLRLLDPEINRFKNTDLDFSQLFTEESTFYINNIFPIATAPFPLVCIKGNEFGHPEWLDFPRAGNNSSYWHARRQWNLTDDELLKYKFLNSNETPATLDNTVVCLSPDGREETQDFPFGCWVNMRTPESNPLKYLLSKNECEILSMEGFKLVPHIECPTLPATLDNTVVCLSPDGREETQDFPFGCWVNTRTPESNPLKYLLSKNECEILSMVRDSN
Secondary Structure (PSIPRED)
cccccccccHHHHHcccccccEEEEEEEcccccccccHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHcccccEEEEEcccccccccccccccccccHHHHHHHccccccccccccccccccccccccHHHccccccccccccccccccccccEEEEEEccEEEEEEEccccccccccEEEccccccccccccccEEEEEcccccccccccccccccccccccccccEEEEEcHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
ccccccccEEEEEccccccccEEEEEcccccHHHcHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHccccEEEEcccccccccHcccccccccccHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccEEEEcccccccHHHHHHcccccHEHEccccEEccccccccccccccccEEEEcccccccccccccccEEccccccccHHHHHHccccHHEHHEEcccc
Coil and Loop (DISEMBL)
mggwhntdfksslTNRSVALTWVMFQSnragkmrtNGIFLFLLRLldpeinrfkntdldfsqlfteestfyinnifpiatapfplvcikgnefghpewldfpragnnssywharrqwnltddellkykflnsnetpatldntvvclspdgreetqdfpfgcwvnmrtpesnplkyllskneceilsmegfklvphiecptlpatldntvvclspdgreetqdfpfgcwvntrtpesnplkyllskneCEILSMVRDSN
Flexible Loop (DISEMBL)
mggwhntdfkssltnrSVALTWVMFQSNRAGKMRTNGIFLFLLRLLDPEINRFKNTDLDFSQLFTEESTFYINNIFPIATAPFPLVCIKGNEFGHPEWLDFPRAGNNSSYWHARRQWNLTDDELLKYKFLnsnetpatldNTVVCLSPDGREETQDFPFGCWVNMRTPESNPLKYLLSKNECEILSMEGFKLVPHIECPTLPATLDNTVVCLSPDGREetqdfpfgcwvntrtpesnplkyllskneceilsmvrdsn
Low Complexity Region (SEG)
MGGWHNTDFKSSLTNRSVALTWVMFQSNRAGKMRTNGIFLFLLRLLDPEINRFKNTDLDFSQLFTEESTFYINNIFPIATAPFPLVCIKGNEFGHPEWLDFPRAGNNSSYWHARRQWNLTDDELLKYKFLNSNETPATLDNTVVCLSPDGREETQDFPFGCWVNMRTPESNPLKYLLSKNECEILSMEGFKLVPHIECPTLPATLDNTVVCLSPDGREETQDFPFGCWVNTRTPESNPLKYLLSKNECEILSMVRDSN
Disordered region (IsUnstruct)
************LTNRSVALTWVMFQSNRAGKMRTNGIFLFLLRLLDPEINRFKNTDLDFSQLFTEESTFYINNIFPIATAPFPLVCIKGNEFGHPEWLDFPRAGNNSSYWHARRQWNLTDDELLKYKFLNSNETPATLDNTVVCLSPDGREETQDFPFGCWVNMRTPESNPLKYLLSKNECEILSMEGFKLVPHIECPTLPATLDNTVVCLSPDGREETQDFPFGCWVNTRTPESNPLKYLLSKNECEIL*******
Disordered Region (DISOPRED)
*GGWHNTDFKSSLTNRSVALTWVMFQSNRAGKMRTNGIFLFLLRLLDPEINRFKNTDLDFSQLFTEESTFYINNIFPIATAPFPLVCIKGNEFGHPEWLDFPRAGNNSSYWHARRQWNLTDDELLKYKFLNSNETPATLDNTVVCLSPDGREETQDFPFGCWVNMRTPESNPLKYLLSKNECEILSMEGFKLVPHIECPTLPATLDNTVVCLSPDGREETQDFPFGCWVNTRTPESNPLKYLLSKNECEILSMVR***
Disordered Region (DISEMBL)
*********KSSLTNRSVALTWVMFQSNRAGKMRTNGIFLFLLRLLDPEINRFKNTDLDFSQLFTEESTFYINNIFPIATAPFPLVCIKGNEFGHPEWLDFPRAGNNSSYWHARRQWNLTDDELLKYKFLNSNETPATLDNTVVCLSPDGREETQDFPFGCWVNMRTPESNPLKYLLSKNECEILSMEGFKLVPHIECPTLPATLDNTVVCLSPDGREETQDFPFGCWVNTRTPESNPLKYLLSKNECEILSMVRDSN
Disordered Region (DISPRO)
***WHNTDFKSSLTNRSVALTWVMFQSNRAGKMRTNGIFLFLLRLLDPEINRFKNTDLDFSQLFTEESTFYINNIFPIATAPFPLVCIKGNEFGHPEWLDFPRAGNNSSYWHARRQWNLTDDELLKYKFLNSNETPATLDNTVVCLSPDGREETQDFPFGCWVNMRTPESNPLKYLLSKNECEILSMEGFKLVPHIECPTLPATLDNTVVCLSPDGREETQDFPFGCWVNTRTPESNPLKYLLSKNECEILSMVR***
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MGGWHNTDFKSSLTNRSVALTWVMFQSNRAGKMRTNGIFLFLLRLLDPEINRFKNTDLDFSQLFTEESTFYINNIFPIATAPFPLVCIKGNEFGHPEWLDFPRAGNNSSYWHARRQWNLTDDELLKYKFLNSNETPATLDNTVVCLSPDGREETQDFPFGCWVNMRTPESNPLKYLLSKNECEILSMEGFKLVPHIECPTLPATLDNTVVCLSPDGREETQDFPFGCWVNTRTPESNPLKYLLSKNECEILSMVRDSN
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	258	2.2.26 [Sep-21-2011]
Q9Y8H3	684	1,4-alpha-glucan-branchin	yes	N/A	0.166	0.062	0.790	3e-15
Q96VA4	689	1,4-alpha-glucan-branchin	yes	N/A	0.166	0.062	0.790	7e-15
Q8NKE1	683	1,4-alpha-glucan-branchin	N/A	N/A	0.166	0.062	0.767	8e-15
Q9D6Y9	702	1,4-alpha-glucan-branchin	yes	N/A	0.162	0.059	0.833	9e-15
P30924	861	1,4-alpha-glucan-branchin	N/A	N/A	0.492	0.147	0.361	2e-14
Q04446	702	1,4-alpha-glucan-branchin	yes	N/A	0.162	0.059	0.809	2e-14
Q6EAS5	699	1,4-alpha-glucan-branchin	yes	N/A	0.162	0.060	0.809	3e-14
Q6T308	699	1,4-alpha-glucan-branchin	N/A	N/A	0.162	0.060	0.809	3e-14
Q6FJV0	706	1,4-alpha-glucan-branchin	yes	N/A	0.197	0.072	0.660	9e-14
P0CN82	682	1,4-alpha-glucan-branchin	yes	N/A	0.162	0.061	0.714	6e-13

>sp|Q9Y8H3|GLGB_EMENI 1,4-alpha-glucan-branching enzyme OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=be1 PE=2 SV=3

 Score = 82.4 bits (202), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 34/43 (79%), Positives = 41/43 (95%)

Query: 89  KGNEFGHPEWLDFPRAGNNSSYWHARRQWNLTDDELLKYKFLN 131
           +GNEFGHPEWLDFPRAGNN+S+W+ARRQ NLT+D LL+Y+FLN
Sbjct: 522 EGNEFGHPEWLDFPRAGNNNSFWYARRQLNLTEDHLLRYRFLN 564

Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) (taxid: 227321)
EC: 2EC: .EC: 4EC: .EC: 1EC: .EC: 1EC: 8

>sp|Q96VA4|GLGB_ASPOR 1,4-alpha-glucan-branching enzyme OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) GN=gbeA PE=2 SV=1

 Score = 81.3 bits (199), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 34/43 (79%), Positives = 40/43 (93%)

Query: 89  KGNEFGHPEWLDFPRAGNNSSYWHARRQWNLTDDELLKYKFLN 131
           +GNEFGHPEWLDFPR GNN+S+W+ARRQ NLT+D LL+YKFLN
Sbjct: 527 EGNEFGHPEWLDFPRDGNNNSFWYARRQLNLTEDHLLRYKFLN 569

Aspergillus oryzae (strain ATCC 42149 / RIB 40) (taxid: 510516)

EC: 2

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: 8

>sp|Q8NKE1|GLGB_GLOIN 1,4-alpha-glucan-branching enzyme OS=Glomus intraradices GN=GLC3 PE=2 SV=1

 Score = 80.9 bits (198), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 33/43 (76%), Positives = 41/43 (95%)

Query: 89  KGNEFGHPEWLDFPRAGNNSSYWHARRQWNLTDDELLKYKFLN 131
           +GNEFGHPEWLDFPRAGNN+S+ +ARRQWN+ DD+LL+YK+LN
Sbjct: 524 EGNEFGHPEWLDFPRAGNNNSFHYARRQWNVVDDDLLRYKYLN 566

Glomus intraradices (taxid: 4876)

EC: 2

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: 8

>sp|Q9D6Y9|GLGB_MOUSE 1,4-alpha-glucan-branching enzyme OS=Mus musculus GN=Gbe1 PE=2 SV=1

 Score = 80.9 bits (198), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 35/42 (83%), Positives = 39/42 (92%)

Query: 90  GNEFGHPEWLDFPRAGNNSSYWHARRQWNLTDDELLKYKFLN 131
           GNEFGHPEWLDFPR GNN SY +ARRQ+NLTDD+LL+YKFLN
Sbjct: 540 GNEFGHPEWLDFPRKGNNESYHYARRQFNLTDDDLLRYKFLN 581

Required for sufficient glycogen accumulation. The alpha 1-6 branches of glycogen play an important role in increasing the solubility of the molecule and, consequently, in reducing the osmotic pressure within cells.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: 8

>sp|P30924|GLGB_SOLTU 1,4-alpha-glucan-branching enzyme OS=Solanum tuberosum GN=SBE1 PE=2 SV=2

 Score = 79.7 bits (195), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 47/130 (36%), Positives = 66/130 (50%), Gaps = 3/130 (2%)

Query: 4   WHNTDFKSSLTNRSVALTWVMFQSNRAGKMRTNGIFLFLLRLLDPEINRFKNTDLDFSQL 63
           W   +  SSLTNR      + +  +    +  +    FLL  +D E+    +   D S +
Sbjct: 527 WSMKEVTSSLTNRRYTEKCIAYAESHDQSIVGDKTIAFLL--MDKEMYSGMSCLTDASPV 584

Query: 64  FTEESTFY-INNIFPIATAPFPLVCIKGNEFGHPEWLDFPRAGNNSSYWHARRQWNLTDD 122
                  + + + F +A      +   GNEFGHPEW+DFPR GNN SY   RRQWNL D 
Sbjct: 585 VDRGIALHKMIHFFTMALGGEGYLNFMGNEFGHPEWIDFPREGNNWSYDKCRRQWNLADS 644

Query: 123 ELLKYKFLNS 132
           E L+YKF+N+
Sbjct: 645 EHLRYKFMNA 654

Catalyzes the formation of the alpha-1,6-glucosidic linkages in starch by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position.

Solanum tuberosum (taxid: 4113)

EC: 2

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: 8

>sp|Q04446|GLGB_HUMAN 1,4-alpha-glucan-branching enzyme OS=Homo sapiens GN=GBE1 PE=1 SV=3

 Score = 79.3 bits (194), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 34/42 (80%), Positives = 39/42 (92%)

Query: 90  GNEFGHPEWLDFPRAGNNSSYWHARRQWNLTDDELLKYKFLN 131
           GNEFGHPEWLDFPR GNN SY +ARRQ++LTDD+LL+YKFLN
Sbjct: 540 GNEFGHPEWLDFPRKGNNESYHYARRQFHLTDDDLLRYKFLN 581

Required for sufficient glycogen accumulation. The alpha 1-6 branches of glycogen play an important role in increasing the solubility of the molecule and, consequently, in reducing the osmotic pressure within cells.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: 8

>sp|Q6EAS5|GLGB_HORSE 1,4-alpha-glucan-branching enzyme OS=Equus caballus GN=GBE1 PE=2 SV=1

 Score = 79.0 bits (193), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 34/42 (80%), Positives = 39/42 (92%)

Query: 90  GNEFGHPEWLDFPRAGNNSSYWHARRQWNLTDDELLKYKFLN 131
           GNEFGHPEWLDFPR GNN SY +ARRQ++LTDD+LL+YKFLN
Sbjct: 537 GNEFGHPEWLDFPRKGNNESYHYARRQFHLTDDDLLRYKFLN 578

Required for sufficient glycogen accumulation. The alpha 1-6 branches of glycogen play an important role in increasing the solubility of the molecule and, consequently, in reducing the osmotic pressure within cells.

Equus caballus (taxid: 9796)

EC: 2

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: 8

>sp|Q6T308|GLGB_FELCA 1,4-alpha-glucan-branching enzyme OS=Felis catus GN=GBE1 PE=2 SV=1

 Score = 79.0 bits (193), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 34/42 (80%), Positives = 39/42 (92%)

Query: 90  GNEFGHPEWLDFPRAGNNSSYWHARRQWNLTDDELLKYKFLN 131
           GNEFGHPEWLDFPR GNN SY +ARRQ++LTDD+LL+YKFLN
Sbjct: 537 GNEFGHPEWLDFPRKGNNESYHYARRQFHLTDDDLLRYKFLN 578

Required for sufficient glycogen accumulation. The alpha 1-6 branches of glycogen play an important role in increasing the solubility of the molecule and, consequently, in reducing the osmotic pressure within cells.

Felis catus (taxid: 9685)

EC: 2

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: 8

>sp|Q6FJV0|GLGB_CANGA 1,4-alpha-glucan-branching enzyme OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=GLC3 PE=3 SV=1

 Score = 77.4 bits (189), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 35/53 (66%), Positives = 42/53 (79%), Gaps = 2/53 (3%)

Query: 89  KGNEFGHPEWLDFPRAGNNSSYWHARRQWNLTDDELLKYKFLNSNETPATLDN 141
           +GNEFGHPEWLDFPR GNN SY +ARRQ+NL DD+LL+Y+ L  NE  A + N
Sbjct: 546 EGNEFGHPEWLDFPRVGNNDSYHYARRQFNLVDDDLLRYRHL--NEFDAAMQN 596

Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) (taxid: 284593)

EC: 2

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: 8

>sp|P0CN82|GLGB_CRYNJ 1,4-alpha-glucan-branching enzyme OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=GLC3 PE=3 SV=1

 Score = 74.7 bits (182), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 30/42 (71%), Positives = 38/42 (90%)

Query: 89  KGNEFGHPEWLDFPRAGNNSSYWHARRQWNLTDDELLKYKFL 130
           +GNEFGHPEW+DFPR GN +S+ HARRQ+NL DD+LL+YK+L
Sbjct: 524 EGNEFGHPEWMDFPREGNGNSFAHARRQFNLVDDKLLRYKYL 565

Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) (taxid: 214684)

EC: 2

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: 8

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	258
320586098	1204	alpha-glucan branching enzyme [Grosmanni	0.170	0.036	0.75	2e-14
225554644	701	1,4-alpha-glucan branching enzyme [Ajell	0.178	0.065	0.782	2e-14
340720425	669	PREDICTED: 1,4-alpha-glucan-branching en	0.232	0.089	0.672	2e-14
242004347	691	1,4-alpha-glucan branching enzyme, putat	0.166	0.062	0.837	2e-14
91076104	692	PREDICTED: similar to GA17312-PA [Tribol	0.162	0.060	0.880	2e-14
167517259	676	hypothetical protein [Monosiga brevicoll	0.162	0.062	0.857	3e-14
358380986	691	glycoside hydrolase family 13 protein [T	0.170	0.063	0.795	3e-14
195154951	745	GL16798 [Drosophila persimilis] gi|19411	0.488	0.169	0.379	3e-14
358340438	653	1 4-alpha-glucan branching enzyme, parti	0.162	0.064	0.880	3e-14
195430802	692	GK21909 [Drosophila willistoni] gi|19415	0.488	0.182	0.387	3e-14

>gi|320586098|gb|EFW98777.1| alpha-glucan branching enzyme [Grosmannia clavigera kw1407]

 Score = 85.9 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 33/44 (75%), Positives = 40/44 (90%)

Query: 89  KGNEFGHPEWLDFPRAGNNSSYWHARRQWNLTDDELLKYKFLNS 132
           +GNEFGHPEWLDFPR GNN+S+W+ARRQ NLT+D LL+Y FLN+
Sbjct: 536 EGNEFGHPEWLDFPREGNNNSFWYARRQLNLTEDPLLRYHFLNN 579

Source: Grosmannia clavigera kw1407

Species: Grosmannia clavigera

Genus: Grosmannia

Family: Ophiostomataceae

Order: Ophiostomatales

Class: Sordariomycetes

Phylum: Ascomycota

Superkingdom: Eukaryota

>gi|225554644|gb|EEH02940.1| 1,4-alpha-glucan branching enzyme [Ajellomyces capsulatus G186AR]

 Score = 85.5 bits (210), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 36/46 (78%), Positives = 43/46 (93%)

Query: 86  VCIKGNEFGHPEWLDFPRAGNNSSYWHARRQWNLTDDELLKYKFLN 131
           +  +GNEFGHPEWLDFPRAGNN+SYW+ARRQ+NLT+D LL+YKFLN
Sbjct: 533 LSFEGNEFGHPEWLDFPRAGNNNSYWYARRQFNLTEDPLLRYKFLN 578

Source: Ajellomyces capsulatus G186AR

Species: Ajellomyces capsulatus

Genus: Ajellomyces

Family: Ajellomycetaceae

Order: Onygenales

Class: Eurotiomycetes

Phylum: Ascomycota

Superkingdom: Eukaryota

>gi|340720425|ref|XP_003398639.1| PREDICTED: 1,4-alpha-glucan-branching enzyme-like [Bombus terrestris]

 Score = 85.5 bits (210), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 41/61 (67%), Positives = 46/61 (75%), Gaps = 1/61 (1%)

Query: 90  GNEFGHPEWLDFPRAGNNSSYWHARRQWNLTDDELLKYKFLNS-NETPATLDNTVVCLSP 148
           GNEFGHPEWLDFPRAGN  SY +ARRQWNL DDELLKYKF+N+ + T  TL+     L  
Sbjct: 510 GNEFGHPEWLDFPRAGNADSYHYARRQWNLVDDELLKYKFMNNWDRTINTLEEKYGWLHA 569

Query: 149 D 149
           D
Sbjct: 570 D 570

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242004347|ref|XP_002423057.1| 1,4-alpha-glucan branching enzyme, putative [Pediculus humanus corporis] gi|212505988|gb|EEB10319.1| 1,4-alpha-glucan branching enzyme, putative [Pediculus humanus corporis]

 Score = 85.5 bits (210), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 36/43 (83%), Positives = 41/43 (95%)

Query: 90  GNEFGHPEWLDFPRAGNNSSYWHARRQWNLTDDELLKYKFLNS 132
           GNEFGHPEWLDFPR GNN+SY++ARRQWNL DD+LLKYKFLN+
Sbjct: 525 GNEFGHPEWLDFPREGNNNSYFYARRQWNLVDDDLLKYKFLNN 567

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91076104|ref|XP_968648.1| PREDICTED: similar to GA17312-PA [Tribolium castaneum] gi|270014582|gb|EFA11030.1| hypothetical protein TcasGA2_TC004619 [Tribolium castaneum]

 Score = 85.1 bits (209), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 37/42 (88%), Positives = 39/42 (92%)

Query: 90  GNEFGHPEWLDFPRAGNNSSYWHARRQWNLTDDELLKYKFLN 131
           GNEFGHPEWLDFPRAGNN+SY +ARRQW L DDELLKYKFLN
Sbjct: 534 GNEFGHPEWLDFPRAGNNNSYHYARRQWQLVDDELLKYKFLN 575

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|167517259|ref|XP_001742970.1| hypothetical protein [Monosiga brevicollis MX1] gi|163778069|gb|EDQ91684.1| predicted protein [Monosiga brevicollis MX1]

 Score = 85.1 bits (209), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 36/42 (85%), Positives = 37/42 (88%)

Query: 90  GNEFGHPEWLDFPRAGNNSSYWHARRQWNLTDDELLKYKFLN 131
           GNEFGHPEWLDFPR GN  SY HARRQWNL DDELL+YKFLN
Sbjct: 516 GNEFGHPEWLDFPREGNGESYQHARRQWNLVDDELLRYKFLN 557

Source: Monosiga brevicollis MX1

Species: Monosiga brevicollis

Genus: Monosiga

Family: Codonosigidae

Order: Choanoflagellida

Superkingdom: Eukaryota

>gi|358380986|gb|EHK18662.1| glycoside hydrolase family 13 protein [Trichoderma virens Gv29-8]

 Score = 85.1 bits (209), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 35/44 (79%), Positives = 44/44 (100%)

Query: 89  KGNEFGHPEWLDFPRAGNNSSYWHARRQWNLTDDELLKYKFLNS 132
           +GNEFGHPEWLDFPRAGNN+S+W+ARRQ+NLT+D+LL+YKFLN+
Sbjct: 527 EGNEFGHPEWLDFPRAGNNNSFWYARRQFNLTEDDLLRYKFLNT 570

Source: Trichoderma virens Gv29-8

Species: Trichoderma virens

Genus: Trichoderma

Family: Hypocreaceae

Order: Hypocreales

Class: Sordariomycetes

Phylum: Ascomycota

Superkingdom: Eukaryota

>gi|195154951|ref|XP_002018376.1| GL16798 [Drosophila persimilis] gi|194114172|gb|EDW36215.1| GL16798 [Drosophila persimilis]

 Score = 85.1 bits (209), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 49/129 (37%), Positives = 65/129 (50%), Gaps = 3/129 (2%)

Query: 4   WHNTDFKSSLTNRSVALTWVMFQSNRAGKMRTNGIFLFLLRLLDPEINRFKNTDLDFSQL 63
           W   D   +LTNR      V +  +    +  +    F L  +D E+    +T  D S +
Sbjct: 500 WSMGDVVHTLTNRRWMENTVAYAESHDQALVGDKTIAFWL--MDKEMYTHMSTQSDSSLI 557

Query: 64  FTEESTFY-INNIFPIATAPFPLVCIKGNEFGHPEWLDFPRAGNNSSYWHARRQWNLTDD 122
                  + +  +   A      +   GNEFGHPEWLDFPR GNN SY +ARRQWNL DD
Sbjct: 558 IDRGLALHKMIRLITHALGGEAYLNFMGNEFGHPEWLDFPRVGNNDSYHYARRQWNLVDD 617

Query: 123 ELLKYKFLN 131
            +LKYK+LN
Sbjct: 618 NMLKYKYLN 626

Source: Drosophila persimilis

Species: Drosophila persimilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|358340438|dbj|GAA48329.1| 1 4-alpha-glucan branching enzyme, partial [Clonorchis sinensis]

 Score = 84.7 bits (208), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 37/42 (88%), Positives = 39/42 (92%)

Query: 90  GNEFGHPEWLDFPRAGNNSSYWHARRQWNLTDDELLKYKFLN 131
           GNEFGHPEWLDFPRAGNNSSY +ARRQWNL DD +LKYKFLN
Sbjct: 501 GNEFGHPEWLDFPRAGNNSSYHYARRQWNLVDDPMLKYKFLN 542

Source: Clonorchis sinensis

Species: Clonorchis sinensis

Genus: Clonorchis

Family: Opisthorchiidae

Order: Opisthorchiida

Class: Trematoda

Phylum: Platyhelminthes

Superkingdom: Eukaryota

>gi|195430802|ref|XP_002063437.1| GK21909 [Drosophila willistoni] gi|194159522|gb|EDW74423.1| GK21909 [Drosophila willistoni]

 Score = 84.7 bits (208), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 50/129 (38%), Positives = 67/129 (51%), Gaps = 3/129 (2%)

Query: 4   WHNTDFKSSLTNRSVALTWVMFQSNRAGKMRTNGIFLFLLRLLDPEINRFKNTDLDFSQL 63
           W+  +   +LTNR      V +  +    +  +    F L  +D E+    +T  D + +
Sbjct: 447 WNMGNVVHTLTNRRWMENTVAYAESHDQALVGDKTIAFWL--MDKEMYTHMSTLSDSTLI 504

Query: 64  FTEESTFY-INNIFPIATAPFPLVCIKGNEFGHPEWLDFPRAGNNSSYWHARRQWNLTDD 122
                  + I  +   A      +   GNEFGHPEWLDFPR GNN SY +ARRQWNL DD
Sbjct: 505 IDRGIALHKIIRLITHALGGEAYLNFMGNEFGHPEWLDFPRVGNNDSYHYARRQWNLVDD 564

Query: 123 ELLKYKFLN 131
           ELLKYK+LN
Sbjct: 565 ELLKYKYLN 573

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	258
FB|FBgn0053138	685	AGBE "1,4-Alpha-Glucan Branchi	0.162	0.061	0.833	6.3e-16
ASPGD|ASPL0000046871	684	AN2314 [Emericella nidulans (t	0.166	0.062	0.790	1e-15
UNIPROTKB|F1LYQ5	537	F1LYQ5 "Uncharacterized protei	0.360	0.173	0.479	1.1e-15
RGD|1309968	536	Gbe1 "glucan (1,4-alpha-), bra	0.166	0.080	0.813	1.4e-15
MGI|MGI:1921435	702	Gbe1 "glucan (1,4-alpha-), bra	0.166	0.061	0.813	2.3e-15
UNIPROTKB|F1MZP0	655	GBE1 "Uncharacterized protein"	0.166	0.065	0.790	7e-15
UNIPROTKB|E9PGM4	661	GBE1 "1,4-alpha-glucan-branchi	0.166	0.065	0.790	7.1e-15
UNIPROTKB|F1PX32	699	GBE1 "Uncharacterized protein"	0.166	0.061	0.790	7.8e-15
UNIPROTKB|Q04446	702	GBE1 "1,4-alpha-glucan-branchi	0.166	0.061	0.790	7.8e-15
UNIPROTKB|E1C303	588	GBE1 "Uncharacterized protein"	0.162	0.071	0.809	9.4e-15

FB|FBgn0053138 AGBE "1,4-Alpha-Glucan Branching Enzyme" [Drosophila melanogaster (taxid:7227)]

 Score = 209 (78.6 bits), Expect = 6.3e-16, P = 6.3e-16
 Identities = 35/42 (83%), Positives = 38/42 (90%)

Query:    90 GNEFGHPEWLDFPRAGNNSSYWHARRQWNLTDDELLKYKFLN 131
             GNEFGHPEWLDFPR GNN SY +ARRQWNL DD+LLKYK+LN
Sbjct:   525 GNEFGHPEWLDFPRVGNNDSYHYARRQWNLVDDDLLKYKYLN 566

GO:0003844 "1,4-alpha-glucan branching enzyme activity" evidence=ISS

GO:0005978 "glycogen biosynthetic process" evidence=IEA

GO:0004553 "hydrolase activity, hydrolyzing O-glycosyl compounds" evidence=IEA

GO:0043169 "cation binding" evidence=IEA

GO:0008340 "determination of adult lifespan" evidence=IMP

ASPGD|ASPL0000046871 AN2314 [Emericella nidulans (taxid:162425)]

 Score = 207 (77.9 bits), Expect = 1.0e-15, P = 1.0e-15
 Identities = 34/43 (79%), Positives = 41/43 (95%)

Query:    89 KGNEFGHPEWLDFPRAGNNSSYWHARRQWNLTDDELLKYKFLN 131
             +GNEFGHPEWLDFPRAGNN+S+W+ARRQ NLT+D LL+Y+FLN
Sbjct:   522 EGNEFGHPEWLDFPRAGNNNSFWYARRQLNLTEDHLLRYRFLN 564

GO:0005982 "starch metabolic process" evidence=RCA

GO:0003844 "1,4-alpha-glucan branching enzyme activity" evidence=IEA;RCA

GO:0004553 "hydrolase activity, hydrolyzing O-glycosyl compounds" evidence=IEA

GO:0043169 "cation binding" evidence=IEA

GO:0005978 "glycogen biosynthetic process" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|F1LYQ5 F1LYQ5 "Uncharacterized protein" [Rattus norvegicus (taxid:10116)]

 Score = 205 (77.2 bits), Expect = 1.1e-15, P = 1.1e-15
 Identities = 46/96 (47%), Positives = 61/96 (63%)

Query:    39 FLFLLRLLDPEINRFKNTDLDFSQ-LFTEESTFYI-NNIFPIATAPFPLVCIKGNEFGHP 96
             F+  L L+DP++ +  N    FS  +F+     ++ + I    T    L     NEFGHP
Sbjct:   322 FVICL-LMDPKVGQSLNGLYPFSMNIFSTLFVHHLPSTILHGFTGQQYLNLFFWNEFGHP 380

Query:    97 EWLDFPRAGNNSSYWHARRQWNLTDDELLKYKFLNS 132
             EWLDFPR GNN SY +ARRQ+NLTDD+LL+YKFLN+
Sbjct:   381 EWLDFPRKGNNESYHYARRQFNLTDDDLLRYKFLNN 416

GO:0003824 "catalytic activity" evidence=IEA

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0043169 "cation binding" evidence=IEA

RGD|1309968 Gbe1 "glucan (1,4-alpha-), branching enzyme 1" [Rattus norvegicus (taxid:10116)]

 Score = 204 (76.9 bits), Expect = 1.4e-15, P = 1.4e-15
 Identities = 35/43 (81%), Positives = 40/43 (93%)

Query:    90 GNEFGHPEWLDFPRAGNNSSYWHARRQWNLTDDELLKYKFLNS 132
             GNEFGHPEWLDFPR GNN SY +ARRQ+NLTDD+LL+YKFLN+
Sbjct:   374 GNEFGHPEWLDFPRKGNNESYHYARRQFNLTDDDLLRYKFLNN 416

GO:0003844 "1,4-alpha-glucan branching enzyme activity" evidence=IDA

GO:0005978 "glycogen biosynthetic process" evidence=IDA

GO:0030246 "carbohydrate binding" evidence=IDA

MGI|MGI:1921435 Gbe1 "glucan (1,4-alpha-), branching enzyme 1" [Mus musculus (taxid:10090)]

 Score = 204 (76.9 bits), Expect = 2.3e-15, P = 2.3e-15
 Identities = 35/43 (81%), Positives = 40/43 (93%)

Query:    90 GNEFGHPEWLDFPRAGNNSSYWHARRQWNLTDDELLKYKFLNS 132
             GNEFGHPEWLDFPR GNN SY +ARRQ+NLTDD+LL+YKFLN+
Sbjct:   540 GNEFGHPEWLDFPRKGNNESYHYARRQFNLTDDDLLRYKFLNN 582

GO:0003824 "catalytic activity" evidence=IEA

GO:0003844 "1,4-alpha-glucan branching enzyme activity" evidence=ISO

GO:0004553 "hydrolase activity, hydrolyzing O-glycosyl compounds" evidence=IEA

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0005978 "glycogen biosynthetic process" evidence=ISO

GO:0016740 "transferase activity" evidence=IEA

GO:0016757 "transferase activity, transferring glycosyl groups" evidence=IEA

GO:0030246 "carbohydrate binding" evidence=ISO

GO:0043169 "cation binding" evidence=IEA

UNIPROTKB|F1MZP0 GBE1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 199 (75.1 bits), Expect = 7.0e-15, P = 7.0e-15
 Identities = 34/43 (79%), Positives = 40/43 (93%)

Query:    90 GNEFGHPEWLDFPRAGNNSSYWHARRQWNLTDDELLKYKFLNS 132
             GNEFGHPEWLDFPR GNN SY +ARRQ++LTDD+LL+YKFLN+
Sbjct:   493 GNEFGHPEWLDFPRKGNNESYHYARRQFHLTDDDLLRYKFLNN 535

GO:0043169 "cation binding" evidence=IEA

GO:0005978 "glycogen biosynthetic process" evidence=IEA

GO:0004553 "hydrolase activity, hydrolyzing O-glycosyl compounds" evidence=IEA

GO:0003844 "1,4-alpha-glucan branching enzyme activity" evidence=IEA

UNIPROTKB|E9PGM4 GBE1 "1,4-alpha-glucan-branching enzyme" [Homo sapiens (taxid:9606)]

 Score = 199 (75.1 bits), Expect = 7.1e-15, P = 7.1e-15
 Identities = 34/43 (79%), Positives = 40/43 (93%)

Query:    90 GNEFGHPEWLDFPRAGNNSSYWHARRQWNLTDDELLKYKFLNS 132
             GNEFGHPEWLDFPR GNN SY +ARRQ++LTDD+LL+YKFLN+
Sbjct:   499 GNEFGHPEWLDFPRKGNNESYHYARRQFHLTDDDLLRYKFLNN 541

GO:0003844 "1,4-alpha-glucan branching enzyme activity" evidence=IEA

GO:0004553 "hydrolase activity, hydrolyzing O-glycosyl compounds" evidence=IEA

GO:0005978 "glycogen biosynthetic process" evidence=IEA

GO:0043169 "cation binding" evidence=IEA

UNIPROTKB|F1PX32 GBE1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 199 (75.1 bits), Expect = 7.8e-15, P = 7.8e-15
 Identities = 34/43 (79%), Positives = 40/43 (93%)

Query:    90 GNEFGHPEWLDFPRAGNNSSYWHARRQWNLTDDELLKYKFLNS 132
             GNEFGHPEWLDFPR GNN SY +ARRQ++LTDD+LL+YKFLN+
Sbjct:   537 GNEFGHPEWLDFPRKGNNESYHYARRQFHLTDDDLLRYKFLNN 579

GO:0043169 "cation binding" evidence=IEA

GO:0005978 "glycogen biosynthetic process" evidence=IEA

GO:0004553 "hydrolase activity, hydrolyzing O-glycosyl compounds" evidence=IEA

GO:0003844 "1,4-alpha-glucan branching enzyme activity" evidence=IEA

UNIPROTKB|Q04446 GBE1 "1,4-alpha-glucan-branching enzyme" [Homo sapiens (taxid:9606)]

 Score = 199 (75.1 bits), Expect = 7.8e-15, P = 7.8e-15
 Identities = 34/43 (79%), Positives = 40/43 (93%)

Query:    90 GNEFGHPEWLDFPRAGNNSSYWHARRQWNLTDDELLKYKFLNS 132
             GNEFGHPEWLDFPR GNN SY +ARRQ++LTDD+LL+YKFLN+
Sbjct:   540 GNEFGHPEWLDFPRKGNNESYHYARRQFHLTDDDLLRYKFLNN 582

GO:0004553 "hydrolase activity, hydrolyzing O-glycosyl compounds" evidence=IEA

GO:0043169 "cation binding" evidence=IEA

GO:0003844 "1,4-alpha-glucan branching enzyme activity" evidence=IEA

GO:0005978 "glycogen biosynthetic process" evidence=IEA;TAS

GO:0005977 "glycogen metabolic process" evidence=TAS

GO:0006091 "generation of precursor metabolites and energy" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0005975 "carbohydrate metabolic process" evidence=TAS

GO:0006006 "glucose metabolic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

UNIPROTKB|E1C303 GBE1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 197 (74.4 bits), Expect = 9.4e-15, P = 9.4e-15
 Identities = 34/42 (80%), Positives = 38/42 (90%)

Query:    90 GNEFGHPEWLDFPRAGNNSSYWHARRQWNLTDDELLKYKFLN 131
             GNEFGHPEWLDFPR GNN S+ +ARRQ+NLTDD LL+YKFLN
Sbjct:   526 GNEFGHPEWLDFPRKGNNESFHYARRQFNLTDDHLLRYKFLN 567

GO:0003844 "1,4-alpha-glucan branching enzyme activity" evidence=IEA

GO:0004553 "hydrolase activity, hydrolyzing O-glycosyl compounds" evidence=IEA

GO:0005978 "glycogen biosynthetic process" evidence=IEA

GO:0043169 "cation binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	258
cd11321	406	cd11321, AmyAc_bac_euk_BE, Alpha amylase catalytic	5e-26
PLN02447	758	PLN02447, PLN02447, 1,4-alpha-glucan-branching enz	5e-20
PLN02960	897	PLN02960, PLN02960, alpha-amylase	1e-10
PLN03244	872	PLN03244, PLN03244, alpha-amylase; Provisional	6e-05

>gnl|CDD|200460 cd11321, AmyAc_bac_euk_BE, Alpha amylase catalytic domain found in bacterial and eukaryotic branching enzymes

 Score =  104 bits (262), Expect = 5e-26
 Identities = 35/42 (83%), Positives = 38/42 (90%)

Query: 90  GNEFGHPEWLDFPRAGNNSSYWHARRQWNLTDDELLKYKFLN 131
           GNEFGHPEWLDFPR GNN SY +ARRQWNL DD+LL+YKFLN
Sbjct: 361 GNEFGHPEWLDFPREGNNWSYHYARRQWNLVDDDLLRYKFLN 402

Branching enzymes (BEs) catalyze the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain, and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends, glycogen is more reactive to synthesis and digestion as well as being more soluble. This group includes bacterial and eukaryotic proteins. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 406

>gnl|CDD|215246 PLN02447, PLN02447, 1,4-alpha-glucan-branching enzyme

 Score = 88.6 bits (220), Expect = 5e-20
 Identities = 28/42 (66%), Positives = 33/42 (78%)

Query: 90  GNEFGHPEWLDFPRAGNNSSYWHARRQWNLTDDELLKYKFLN 131
           GNEFGHPEW+DFPR GN  SY   RR+W+L D + L+YKFLN
Sbjct: 573 GNEFGHPEWIDFPREGNGWSYDKCRRRWDLADADHLRYKFLN 614

Length = 758

>gnl|CDD|215519 PLN02960, PLN02960, alpha-amylase

 Score = 61.0 bits (148), Expect = 1e-10
 Identities = 20/33 (60%), Positives = 26/33 (78%)

Query: 90  GNEFGHPEWLDFPRAGNNSSYWHARRQWNLTDD 122
           GNEFGHPE ++FPRA NN S+  A R+W+L +D
Sbjct: 735 GNEFGHPERVEFPRASNNFSFSLANRRWDLLED 767

Length = 897

>gnl|CDD|178782 PLN03244, PLN03244, alpha-amylase; Provisional

 Score = 43.5 bits (102), Expect = 6e-05
 Identities = 19/40 (47%), Positives = 27/40 (67%)

Query: 90  GNEFGHPEWLDFPRAGNNSSYWHARRQWNLTDDELLKYKF 129
           GNEFGHPE ++FP   NN S+  A R W+L ++E+  + F
Sbjct: 710 GNEFGHPERIEFPMPSNNFSFSLANRCWDLLENEVHHHLF 749

Length = 872

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	258
PLN02447	758	1,4-alpha-glucan-branching enzyme	100.0
PLN03244	872	alpha-amylase; Provisional	100.0
KOG0470|consensus	757		100.0
PLN02960	897	alpha-amylase	99.97
PRK14706	639	glycogen branching enzyme; Provisional	99.37
TIGR01515	613	branching_enzym alpha-1,4-glucan:alpha-1,4-glucan	98.95
PRK14705	1224	glycogen branching enzyme; Provisional	98.92
PRK12313	633	glycogen branching enzyme; Provisional	98.82
PRK05402	726	glycogen branching enzyme; Provisional	98.59
PRK12568	730	glycogen branching enzyme; Provisional	98.54
COG0296	628	GlgB 1,4-alpha-glucan branching enzyme [Carbohydra	97.75

>PLN02447 1,4-alpha-glucan-branching enzyme

Probab=100.00  E-value=2.5e-60  Score=471.40  Aligned_cols=173  Identities=28%  Similarity=0.455  Sum_probs=166.2

Q ss_pred             CCcccccceecccccccccceeeeeecccccccccchhhHHHHhcChhhhcccccCCCCCcccchhHH-HHHHhhhhhhc
Q psy9009           2 GGWHNTDFKSSLTNRSVALTWVMFQSNRAGKMRTNGIFLFLLRLLDPEINRFKNTDLDFSQLFTEEST-FYINNIFPIAT   80 (258)
Q Consensus         2 ~~W~m~dI~~tLtNRR~~Ek~iayaEsHdQalVg~Gd~T~af~LMd~eMY~~Msv~~~~s~~id~~~~-~KmirLiT~a~   80 (258)
                      .+|+|++|+++|+||||.||+|+|+|||||++|  |++||||||||+|||++|+.+++.+.+++|+++ ||||||+|+++
T Consensus       486 ~~~~~~~l~~sl~~r~~~E~~I~y~eSHDevv~--Gkksl~~~l~d~~my~~m~~~~~~~~~~~R~~~lhkmirl~~~~~  563 (758)
T PLN02447        486 EDWSMGDIVHTLTNRRYTEKCVAYAESHDQALV--GDKTIAFWLMDKEMYDGMSTLTPATPVVDRGIALHKMIRLITMAL  563 (758)
T ss_pred             cccCHHHHHHHHhcccccCceEeccCCcCeeec--CcchhHhhhcchhhhhcCCCChhhhhhHHHHHHHHHHHHHHHHhC
Confidence            579999999999999999999999999999998  777999999999999999999999999997755 99999999999


Q ss_pred             CCCceeeeccCcCCCCCcccCCCCCCCChhhhhhccccccCCCCCCcccccCCh-hHHhhHhhcccCCCCCCC------C
Q psy9009          81 APFPLVCIKGNEFGHPEWLDFPRAGNNSSYWHARRQWNLTDDELLKYKFLNSNE-TPATLDNTVVCLSPDGRE------E  153 (258)
Q Consensus        81 gGeGYLNFMGNEFGHPEWiDFPReGNn~Sy~yARRQW~L~Dd~~LrYk~L~~FD-aM~~le~~~~~L~~~~~y------e  153 (258)
                      +|+||||||||||||||||||||+||+|||+||||||+|+|++.|+|++|++|| +||+|++++++|.++..+      +
T Consensus       564 pG~g~L~FMGnEFg~~ew~Dfpr~~n~ws~~~~~~~W~L~d~~~l~~~~l~~f~~~L~~l~~~~~~L~~~~~~i~~~d~~  643 (758)
T PLN02447        564 GGEGYLNFMGNEFGHPEWIDFPREGNGWSYDKCRRRWDLADADHLRYKFLNAFDRAMMHLDEKYGFLTSEHQYVSRKDEG  643 (758)
T ss_pred             CCCcceeecccccCCchhccCcccccccCcccccCCccccCCCchhhhHHHHHHHHHHHHHhcCccccCCCceeeeecCC
Confidence            999999999999999999999999999999999999999999999999999999 999999999999988777      6


Q ss_pred             Ccc--------------ccCCccccccccccCCceee
Q psy9009         154 TQD--------------FPFGCWVNMRTPESNPLKYL  176 (258)
Q Consensus       154 dKV--------------hp~kSy~dYrvgv~~pGkY~  176 (258)
                      +||              ||++||+||||||..||+|+
T Consensus       644 ~~Viaf~R~~ll~V~NF~p~~s~~~Y~igvp~~G~y~  680 (758)
T PLN02447        644 DKVIVFERGDLVFVFNFHPTNSYSDYRVGCDKPGKYK  680 (758)
T ss_pred             CCEEEEEeCCeEEEEeCCCCCCCCCcEECCCCCCeEE
Confidence            676              99999999999999999998

>PLN03244 alpha-amylase; Provisional

Probab=100.00  E-value=1e-52  Score=420.54  Aligned_cols=167  Identities=22%  Similarity=0.284  Sum_probs=156.0

Q ss_pred             CCcccccceecc-cccccccceeeeeecccccccccchhhHHHHhcChhhhcccccCCCCCcccchh-HHHHHHhhhhhh
Q psy9009           2 GGWHNTDFKSSL-TNRSVALTWVMFQSNRAGKMRTNGIFLFLLRLLDPEINRFKNTDLDFSQLFTEE-STFYINNIFPIA   79 (258)
Q Consensus         2 ~~W~m~dI~~tL-tNRR~~Ek~iayaEsHdQalVg~Gd~T~af~LMd~eMY~~Msv~~~~s~~id~~-~~~KmirLiT~a   79 (258)
                      ..|+|+.|+++| +|||+.|++|+|+|||||++|  |++||+|||||++||.+|+    .+.+++|+ ++||||||+|++
T Consensus       626 erw~~~~ItfsL~~nrr~~ek~~aYsESHDqaLv--GdKTlaf~l~d~~~y~~~~----~~~vv~Rg~aLhKMiRllt~~  699 (872)
T PLN03244        626 HEWSMSKIVSTLIANKEYADKMLSYAENHNQSIS--GGRSFAEILFGAIDEDPLG----GKELLDRGCSLHKMIRLITFT  699 (872)
T ss_pred             cccCHHHHhhhhhcccCCcceEEEEecccceecc--ccchHHhhhcccccccccc----cchhhhhhhHHHHHHHHHHHH
Confidence            359999999999 999999999999999999998  8889999999999999993    45566654 569999999999


Q ss_pred             cCCCceeeeccCcCCCCCcccCCCCCCCChhhhhhccccccCCCCCCcccccCCh-hHHhhHhhcccCCCCCCC------
Q psy9009          80 TAPFPLVCIKGNEFGHPEWLDFPRAGNNSSYWHARRQWNLTDDELLKYKFLNSNE-TPATLDNTVVCLSPDGRE------  152 (258)
Q Consensus        80 ~gGeGYLNFMGNEFGHPEWiDFPReGNn~Sy~yARRQW~L~Dd~~LrYk~L~~FD-aM~~le~~~~~L~~~~~y------  152 (258)
                      ++|++||||||||||||||+||||+||++||+||||||+|+|++.  |++|++|| +||+|.+++++|.++.++      
T Consensus       700 ~~G~kkLnFMGNEFGhpe~~dfPr~gN~~s~~~arrdW~Lld~~~--hk~L~~FdrdLn~Ly~~~~aL~~gf~wI~~~d~  777 (872)
T PLN03244        700 IGGHAYLNFMGNEFGHPERIEFPMPSNNFSFSLANRCWDLLENEV--HHHLFSFDKDLMDLDENEGILSRGLPNIHHVKD  777 (872)
T ss_pred             ccCccceeecccccCCchheeccccCCCccccccccCccccCChh--HHHHHHHHHHHHHHHhcCcccccCCcEEeeecC
Confidence            999999999999999999999999999999999999999999885  99999999 999999999999988876      


Q ss_pred             CCcc--------------ccCCccccccccccCCceee
Q psy9009         153 ETQD--------------FPFGCWVNMRTPESNPLKYL  176 (258)
Q Consensus       153 edKV--------------hp~kSy~dYrvgv~~pGkY~  176 (258)
                      ++||              ||++||+||+|||..||+|+
T Consensus       778 e~kVIAF~R~~LLfVfNF~P~~sy~dYrIGVp~~G~Y~  815 (872)
T PLN03244        778 AAMVISFMRGPFLFIFNFHPSNSYEGYDVGVEEAGEYQ  815 (872)
T ss_pred             CCCEEEEEecCEEEEEeCCCCCCccCCEECCCCCCeEE
Confidence            6676              99999999999999999998

>KOG0470|consensus

Probab=100.00  E-value=6.1e-52  Score=410.46  Aligned_cols=173  Identities=25%  Similarity=0.376  Sum_probs=166.9

Q ss_pred             CCcccccceecccccccccceeeeeecccccccccch-hhHHH-HhcChhhhcccccCCCCCcccchhHH-HHHHhhhhh
Q psy9009           2 GGWHNTDFKSSLTNRSVALTWVMFQSNRAGKMRTNGI-FLFLL-RLLDPEINRFKNTDLDFSQLFTEEST-FYINNIFPI   78 (258)
Q Consensus         2 ~~W~m~dI~~tLtNRR~~Ek~iayaEsHdQalVg~Gd-~T~af-~LMd~eMY~~Msv~~~~s~~id~~~~-~KmirLiT~   78 (258)
                      .+|.||+|.++||||||+||+|+|||+|||++|  || +||+| ||||+.||..|++..|.+++|+|+++ ||||||||+
T Consensus       504 ~~~~~gs~~~~ltN~R~~e~~v~y~~~HDq~~v--~d~~T~af~~l~d~~~~~~~~~g~p~~~~idR~r~~h~~~~lit~  581 (757)
T KOG0470|consen  504 AEWIMGSIDYTLTNRRYPEKSVNYAESHDQALV--GDLVTIAFKWLMDETSWNCGSEGTPGTSVIDRGRALHKMIRLITL  581 (757)
T ss_pred             hheeccCcceeeeccccccceeeeeeccCCccc--cceeeecchhhcchhhhcccccCCCcchHHHHHHHHHHHHHHHHH
Confidence            479999999999999999999999999999998  77 89999 99999999999999999999998877 999999999


Q ss_pred             hcCCCceeeeccCcCCCCCcccCCCCCCCChhhhhhc-cccccCCCCCCc-ccccCCh-hHHhhHhhcccCCCCCCC---
Q psy9009          79 ATAPFPLVCIKGNEFGHPEWLDFPRAGNNSSYWHARR-QWNLTDDELLKY-KFLNSNE-TPATLDNTVVCLSPDGRE---  152 (258)
Q Consensus        79 a~gGeGYLNFMGNEFGHPEWiDFPReGNn~Sy~yARR-QW~L~Dd~~LrY-k~L~~FD-aM~~le~~~~~L~~~~~y---  152 (258)
                      ++||++||||||||||||||+||||.|||.||+|||| ||+|+|.+.+|| +.|++|| +|+.|++.++|+++..++   
T Consensus       582 ~lg~g~pl~fmGdEfGh~e~~d~~~~~nn~s~~~~r~~~f~~~~~~~~r~~~~l~~F~~~~~~L~~~~~~~~~~~~~~~~  661 (757)
T KOG0470|consen  582 GLGGGAPLNFMGDEFGHPEWLDFPRYGNNFSYNYARRKRFDLADSDLLRYRRQLNSFDREMNLLEERNGFTTSELQYISL  661 (757)
T ss_pred             hccCccceeccccccCCccccCCCcccCCccccccCccccccccchhhhhhhhhhhhhhHHHHHHHhccccccccccccc
Confidence            9999999999999999999999999999999999999 999999999999 9999999 999999999999999988   


Q ss_pred             ---CCcc--------------ccCCccccccccccCCceee
Q psy9009         153 ---ETQD--------------FPFGCWVNMRTPESNPLKYL  176 (258)
Q Consensus       153 ---edKV--------------hp~kSy~dYrvgv~~pGkY~  176 (258)
                         .|++              ||++||.||+||++.||+|+
T Consensus       662 k~e~~~~i~fer~~~~~vfn~h~~~s~~d~~vg~n~~~~~~  702 (757)
T KOG0470|consen  662 KHEADEVIVFERGPLLFVFNFHDSNSYIDYRVGFNAPGKYT  702 (757)
T ss_pred             cchhhheeeeccCCeEEEEEecCCCCCceeEEEecCCCceE
Confidence               3443              99999999999999999999

>PLN02960 alpha-amylase

Probab=99.97  E-value=7.7e-33  Score=279.51  Aligned_cols=167  Identities=24%  Similarity=0.325  Sum_probs=150.9

Q ss_pred             CCcccccceeccc-ccccccceeeeeecccccccccchhhHHHHhcChhhhcccccCCCCCcccchh-HHHHHHhhhhhh
Q psy9009           2 GGWHNTDFKSSLT-NRSVALTWVMFQSNRAGKMRTNGIFLFLLRLLDPEINRFKNTDLDFSQLFTEE-STFYINNIFPIA   79 (258)
Q Consensus         2 ~~W~m~dI~~tLt-NRR~~Ek~iayaEsHdQalVg~Gd~T~af~LMd~eMY~~Msv~~~~s~~id~~-~~~KmirLiT~a   79 (258)
                      ++|+|..|.++++ ||+.+|+.|+|+|||||.++  |.++++.+|++.+++.+|++    ++.+.|+ ++|+|+||+|++
T Consensus       651 r~~~~~~l~~s~~~~~~~~~~~v~Y~EnHDQVv~--Gkrsl~~rL~g~~~~k~~~~----~~~~lRa~al~~~~rllt~~  724 (897)
T PLN02960        651 QEWSMSKIVSTLVKNKENADKMLSYAENHNQSIS--GGKSFAEILLGKNKESSPAV----KELLLRGVSLHKMIRLITFT  724 (897)
T ss_pred             CCCChhccEeeeccCcCCcceEEEEecCcCcccc--CcccHHHHCCCchhhhhccc----ChhhhhhhhHHHHHHHHHHH
Confidence            5799999999999 99999999999999999998  66699999999999999988    3345555 569999999999


Q ss_pred             cCCCceeeeccCcCCCCCcccCCCCCCCChhhhhhccccccCCCCCCcccccCCh-hHHhhHhhcccCCCCCCC------
Q psy9009          80 TAPFPLVCIKGNEFGHPEWLDFPRAGNNSSYWHARRQWNLTDDELLKYKFLNSNE-TPATLDNTVVCLSPDGRE------  152 (258)
Q Consensus        80 ~gGeGYLNFMGNEFGHPEWiDFPReGNn~Sy~yARRQW~L~Dd~~LrYk~L~~FD-aM~~le~~~~~L~~~~~y------  152 (258)
                      ++|+.+|+|||||||||||.|||+++|++||++|++||+|+|++  .++.|.+|+ +||+|.++...|.+....      
T Consensus       725 ~~Pg~pLlFMG~EFGh~e~~~~PdP~n~~tf~~s~LdW~Ll~~~--~h~~l~~f~rdL~~Lr~~~paL~~g~~~i~~~d~  802 (897)
T PLN02960        725 LGGSAYLNFMGNEFGHPERVEFPRASNNFSFSLANRRWDLLEDG--VHAHLFSFDKALMALDEKYLILSRGLPNIHHVND  802 (897)
T ss_pred             hCCCCCEeeCccccCChhhhhCcCCCCccccccccCCcccccCh--hHHHHHHHHHHHHHHHhcChhhcCCcceeeeecC
Confidence            99999999999999999999999999999999999999999987  499999999 999999999999766544      


Q ss_pred             CCcc--------------ccCCccccccccccCCceee
Q psy9009         153 ETQD--------------FPFGCWVNMRTPESNPLKYL  176 (258)
Q Consensus       153 edKV--------------hp~kSy~dYrvgv~~pGkY~  176 (258)
                      +++|              +|..++.+|+|||..+|+|+
T Consensus       803 ~~~Viaf~R~~llvV~NFsp~~~~~~Y~vgvP~~G~y~  840 (897)
T PLN02960        803 TSMVISFTRGPLLFAFNFHPTNSYEEYEVGVEEAGEYE  840 (897)
T ss_pred             CCCEEEEEeCCeEEEEeCCCCCcCcCceECCCCCCcEE
Confidence            3344              88889999999999999998

>PRK14706 glycogen branching enzyme; Provisional

Probab=99.37  E-value=2.5e-13  Score=133.63  Aligned_cols=130  Identities=14%  Similarity=0.076  Sum_probs=89.0

Q ss_pred             cccccceeeeeecccccccccchhhHHHHhcChhhhcccccCCCCCcccchhHHHHHHhhhhhhcCCCceeeeccCcCCC
Q psy9009          16 RSVALTWVMFQSNRAGKMRTNGIFLFLLRLLDPEINRFKNTDLDFSQLFTEESTFYINNIFPIATAPFPLVCIKGNEFGH   95 (258)
Q Consensus        16 RR~~Ek~iayaEsHdQalVg~Gd~T~af~LMd~eMY~~Msv~~~~s~~id~~~~~KmirLiT~a~gGeGYLNFMGNEFGH   95 (258)
                      .++.|+.| |.+|||++..|+  ++++.. |            +-+. -...+..|+.-.+++ +..+..|+||||||| 
T Consensus       411 y~~~e~~i-l~~SHDev~~~k--~sl~~k-~------------~g~~-~~~~a~~r~~~~~~~-t~PG~pLiFmG~EfG-  471 (639)
T PRK14706        411 YRTSENYV-LAISHDEVVHLK--KSMVMK-M------------PGDW-YTQRAQYRAFLAMMW-TTPGKKLLFMGQEFA-  471 (639)
T ss_pred             hhccccEe-cCCCCccccCCc--cchHhH-c------------CCCH-HHHHHHHHHHHHHHH-hCCCCcEEEeccccC-
Confidence            57889987 999999999844  466542 2            1100 001122222222333 456679999999999 


Q ss_pred             CCcccCCCCCCCChhhhhhccccccCCCCCCcccccCCh-hHHhhHhhcccCCCCC-------------------CC---
Q psy9009          96 PEWLDFPRAGNNSSYWHARRQWNLTDDELLKYKFLNSNE-TPATLDNTVVCLSPDG-------------------RE---  152 (258)
Q Consensus        96 PEWiDFPReGNn~Sy~yARRQW~L~Dd~~LrYk~L~~FD-aM~~le~~~~~L~~~~-------------------~y---  152 (258)
                              +++.|++ +++++|+++|.+..  +.|.+|. +||+|-+++..|....                   +|   
T Consensus       472 --------~~~ew~~-~~~l~W~l~~~~~~--~~l~~~~k~L~~L~k~~paL~~gd~~~~~f~wi~~~d~~~~VlaF~R~  540 (639)
T PRK14706        472 --------QGTEWNH-DASLPWYLTDVPDH--RGVMNLVRRLNQLYRERPDWHRGDKREEGLYWVSADDTDNSVYAYVRR  540 (639)
T ss_pred             --------CCCCCCc-ccCCCCcccCCHHH--HHHHHHHHHHHHHHHhCHHHhhCCCCCCCeEEEEeecCCCCEEEEEEe
Confidence                    4566774 68899999987654  4689999 9999999988884211                   11   


Q ss_pred             --C--Ccc------ccCCccccccccccCCceee
Q psy9009         153 --E--TQD------FPFGCWVNMRTPESNPLKYL  176 (258)
Q Consensus       153 --e--dKV------hp~kSy~dYrvgv~~pGkY~  176 (258)
                        +  ++|      +| .+|.+|+||+..+|+|+
T Consensus       541 ~~~~~~~vlvV~Nfs~-~~~~~y~ig~p~~g~~~  573 (639)
T PRK14706        541 DSESGAWSLAVANLTP-VYREQYRIGVPQGGEYR  573 (639)
T ss_pred             cCCCCeeEEEEEeCCC-CCcCCeEECCCCCCeEE
Confidence              1  113      66 77999999999999998

>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase

Probab=98.95  E-value=1e-09  Score=106.89  Aligned_cols=129  Identities=13%  Similarity=0.111  Sum_probs=86.3

Q ss_pred             ccccceeeeeecccccccccchhhHHHHhcChhhhcccccCCCCCcccchhHHHHHHhhhhhhcCCCceeeeccCcCCC-
Q psy9009          17 SVALTWVMFQSNRAGKMRTNGIFLFLLRLLDPEINRFKNTDLDFSQLFTEESTFYINNIFPIATAPFPLVCIKGNEFGH-   95 (258)
Q Consensus        17 R~~Ek~iayaEsHdQalVg~Gd~T~af~LMd~eMY~~Msv~~~~s~~id~~~~~KmirLiT~a~gGeGYLNFMGNEFGH-   95 (258)
                      ++.|.++ +.+|||++..  |+.+++.++.|..          ..    .....|+.-.+.+ +..+..|.|||+|||+ 
T Consensus       404 ~~~e~~~-~~~sHD~~~~--g~~~i~~~~~g~~----------~~----~~~~~r~~~~~~~-t~pG~plif~G~E~g~~  465 (613)
T TIGR01515       404 AFSENFV-LPLSHDEVVH--GKKSLLNKMPGDY----------WQ----KFANYRALLGYMW-AHPGKKLLFMGSEFAQG  465 (613)
T ss_pred             Hhhhccc-cCCCCCCccc--CcccHHHhCCCch----------HH----HHHHHHHHHHHHH-hCCCCCEEEcchhcCcC
Confidence            4556665 7889999987  5556665443320          00    1122333333333 3467899999999999 


Q ss_pred             CCcccCCCCCCCChhhhhhccccccCCCCCCcccccCCh-hHHhhHhhcccCCCC----------------C---CC---
Q psy9009          96 PEWLDFPRAGNNSSYWHARRQWNLTDDELLKYKFLNSNE-TPATLDNTVVCLSPD----------------G---RE---  152 (258)
Q Consensus        96 PEWiDFPReGNn~Sy~yARRQW~L~Dd~~LrYk~L~~FD-aM~~le~~~~~L~~~----------------~---~y---  152 (258)
                      +||.|           +++.+|++++++  .++.|.+|. +|++|-+++..|...                .   +|   
T Consensus       466 ~~~~~-----------~~~l~W~~~~~~--~~~~l~~~~k~L~~Lr~~~paL~~~~~~~~~~~~~~~~~~~~~vlaf~R~  532 (613)
T TIGR01515       466 SEWND-----------TEQLDWHLLSFP--MHQGVSVFVRDLNRTYQKSKALYEHDFDPQGFEWIDVDDDEQSVFSFIRR  532 (613)
T ss_pred             CCCCC-----------CccCCCccccCc--ccHHHHHHHHHHHHHHhhCHHhhccCCCCCceEEEEcccCCCCEEEEEEe
Confidence            77743           468899998876  678899999 999999888766321                1   11   


Q ss_pred             -C---Ccc-----ccCCccccccccccCCceee
Q psy9009         153 -E---TQD-----FPFGCWVNMRTPESNPLKYL  176 (258)
Q Consensus       153 -e---dKV-----hp~kSy~dYrvgv~~pGkY~  176 (258)
                       +   +++     .....+.+|+||+..||+|+
T Consensus       533 ~~~~~~~~~vv~N~~~~~~~~Y~i~~p~~g~~~  565 (613)
T TIGR01515       533 AKKHGEALVIICNFTPVVRHQYRVGVPQPGQYR  565 (613)
T ss_pred             cCCCCCeEEEEEeCCCCCccceEeCCCCCCeEE
Confidence             1   123     22356789999998899998

A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.

>PRK14705 glycogen branching enzyme; Provisional

Probab=98.92  E-value=9.8e-10  Score=115.78  Aligned_cols=143  Identities=14%  Similarity=0.098  Sum_probs=96.6

Q ss_pred             CcccccceecccccccccceeeeeecccccccccchhhHHHHhcChhhhcccccCCCCCcccchhHHHHHHhhhhhhcCC
Q psy9009           3 GWHNTDFKSSLTNRSVALTWVMFQSNRAGKMRTNGIFLFLLRLLDPEINRFKNTDLDFSQLFTEESTFYINNIFPIATAP   82 (258)
Q Consensus         3 ~W~m~dI~~tLtNRR~~Ek~iayaEsHdQalVg~Gd~T~af~LMd~eMY~~Msv~~~~s~~id~~~~~KmirLiT~a~gG   82 (258)
                      .|+++.|.++|... |.|+.| +..|||+...|+|  ++ +..|+-+.++.++.             .++.--+++ +..
T Consensus      1000 ~~~~~~ltf~~~ya-~~e~fv-l~~SHDevvhgk~--sl-~~km~Gd~~~k~a~-------------lR~~~a~~~-~~P 1060 (1224)
T PRK14705       1000 KWHHGTITFSLVYA-FTENFL-LPISHDEVVHGKG--SM-LRKMPGDRWQQLAN-------------LRAFLAYQW-AHP 1060 (1224)
T ss_pred             hcccchHHHHHHHH-hhcCEe-cccccccccccch--hH-HHhCCCcHHHHHHH-------------HHHHHHHHH-hcC
Confidence            35666666666653 888855 7999999987655  44 35565555544422             221111223 336


Q ss_pred             CceeeeccCcCCCCCcccCCCCCCCChhhhhhccccccCCCCCCcccccCCh-hHHhhHhhcccCCCCC----CC-----
Q psy9009          83 FPLVCIKGNEFGHPEWLDFPRAGNNSSYWHARRQWNLTDDELLKYKFLNSNE-TPATLDNTVVCLSPDG----RE-----  152 (258)
Q Consensus        83 eGYLNFMGNEFGHPEWiDFPReGNn~Sy~yARRQW~L~Dd~~LrYk~L~~FD-aM~~le~~~~~L~~~~----~y-----  152 (258)
                      +-.|+|||+|||++..         |+++ ...+|+|+|.+  ..+.+..|. +||+|-++..-|....    .+     
T Consensus      1061 Gk~LlFMG~Efgq~~e---------w~~~-~~LdW~ll~~~--~h~~~~~~~rdLn~ly~~~paL~~~d~~~~gf~wi~~ 1128 (1224)
T PRK14705       1061 GKQLIFMGTEFGQEAE---------WSEQ-HGLDWFLADIP--AHRGIQLLTKDLNELYTSTPALYQRDNEPGGFQWING 1128 (1224)
T ss_pred             CcCEEECccccCCCCC---------cccc-ccCCCcccCCh--hhHHHHHHHHHHHHHHhcChhhhccCCCCCceEEeec
Confidence            6899999999999842         4444 46999999977  457788999 9999999887774221    00     


Q ss_pred             ---C-------------Ccc-----ccCCccccccccccCCceee
Q psy9009         153 ---E-------------TQD-----FPFGCWVNMRTPESNPLKYL  176 (258)
Q Consensus       153 ---e-------------dKV-----hp~kSy~dYrvgv~~pGkY~  176 (258)
                         +             ++|     .....+.+|+|||..+|+|+
T Consensus      1129 ~d~~~~vlaf~R~~~~~~~vlvv~Nftp~~~~~y~igvp~~G~y~ 1173 (1224)
T PRK14705       1129 GDADRNVLSFIRWDGDGNPLVCAINFSGGPHKGYTLGVPAAGAWT 1173 (1224)
T ss_pred             CCCCCcEEEEEEeCCCCCEEEEEEcCCCCCccCceECCCCCCeEE
Confidence               1             122     32367889999999999998

>PRK12313 glycogen branching enzyme; Provisional

Probab=98.82  E-value=5.1e-09  Score=101.87  Aligned_cols=129  Identities=14%  Similarity=0.128  Sum_probs=84.7

Q ss_pred             ccccceeeeeecccccccccchhhHHHHhcChhhhcccccCCCCCcccchhHHHHHHhhhhhhcCCCceeeeccCcCCC-
Q psy9009          17 SVALTWVMFQSNRAGKMRTNGIFLFLLRLLDPEINRFKNTDLDFSQLFTEESTFYINNIFPIATAPFPLVCIKGNEFGH-   95 (258)
Q Consensus        17 R~~Ek~iayaEsHdQalVg~Gd~T~af~LMd~eMY~~Msv~~~~s~~id~~~~~KmirLiT~a~gGeGYLNFMGNEFGH-   95 (258)
                      ++.|.++ +.+|||++..  |..+++.+|.+ +++.             ..+..|+.-.++++. .+..|.|||+|||+ 
T Consensus       417 ~~~e~~~-l~~sHD~~~~--g~~~~~~~~~g-~~~~-------------~~~~~r~~~~~~~t~-pG~Plif~G~E~g~~  478 (633)
T PRK12313        417 AFSENFV-LPFSHDEVVH--GKKSLMHKMPG-DRWQ-------------QFANLRLLYTYMITH-PGKKLLFMGSEFGQF  478 (633)
T ss_pred             hhhcccc-cCCCCccccc--CCccHHHhcCC-CHHH-------------HHHHHHHHHHHHHhC-CCCcEeecccccccC
Confidence            3555553 6679999987  55566655533 2222             122345444455554 55899999999996 


Q ss_pred             CCcccCCCCCCCChhhhhhccccccCCCCCCcccccCCh-hHHhhHhhcccCCCC----CC---------------C--C
Q psy9009          96 PEWLDFPRAGNNSSYWHARRQWNLTDDELLKYKFLNSNE-TPATLDNTVVCLSPD----GR---------------E--E  153 (258)
Q Consensus        96 PEWiDFPReGNn~Sy~yARRQW~L~Dd~~LrYk~L~~FD-aM~~le~~~~~L~~~----~~---------------y--e  153 (258)
                      +||-+           .++.+|++++++.  ++.|.+|. .|++|-+++..|...    ..               |  .
T Consensus       479 ~~~~~-----------~~~l~W~~~~~~~--~~~l~~~~r~Li~LRr~~paL~~~d~~~~~~~~l~~~~~~~~vlaf~R~  545 (633)
T PRK12313        479 LEWKH-----------DESLEWHLLEDPM--NAGMQRFTSDLNQLYKDEPALWELDFSPDGFEWIDADDADQSVLSFIRK  545 (633)
T ss_pred             ccCCc-----------cCCCCccccCChh--HHHHHHHHHHHHHHHHhChHhhcccCCCCCcEEEECcCCCCCEEEEEEe
Confidence            44421           2678999987663  77899999 999999988887521    11               1  1


Q ss_pred             C-----cc-----ccCCccccccccccCCceee
Q psy9009         154 T-----QD-----FPFGCWVNMRTPESNPLKYL  176 (258)
Q Consensus       154 d-----KV-----hp~kSy~dYrvgv~~pGkY~  176 (258)
                      +     .+     ...+.+++|+|++..+|+|+
T Consensus       546 ~~~~~~~llvv~N~s~~~~~~y~i~~p~~g~~~  578 (633)
T PRK12313        546 GKNKGDFLVVVFNFTPVEREDYRIGVPVAGIYE  578 (633)
T ss_pred             CCCCCceEEEEEeCCCCcccceeECCCCCCeEE
Confidence            1     11     22345789999998889998

>PRK05402 glycogen branching enzyme; Provisional

Probab=98.59  E-value=6.4e-08  Score=96.12  Aligned_cols=129  Identities=13%  Similarity=0.031  Sum_probs=82.7

Q ss_pred             cccceeeeeecccccccccchhhHHHHhcChhhhcccccCCCCCcccchhHHHHHHhhhhhhcCCCceeeeccCcCCCCC
Q psy9009          18 VALTWVMFQSNRAGKMRTNGIFLFLLRLLDPEINRFKNTDLDFSQLFTEESTFYINNIFPIATAPFPLVCIKGNEFGHPE   97 (258)
Q Consensus        18 ~~Ek~iayaEsHdQalVg~Gd~T~af~LMd~eMY~~Msv~~~~s~~id~~~~~KmirLiT~a~gGeGYLNFMGNEFGHPE   97 (258)
                      |.|..+ +.+|||++..  |+.+++.++-+ +++.             ..+..|+.-.++++. .+..|.|||+|||++.
T Consensus       514 ~~e~~~-l~~sHD~~~~--g~~~l~~~~~g-~~~~-------------~~~~lrl~~~~~~t~-pG~Plif~G~E~g~~~  575 (726)
T PRK05402        514 YSENFV-LPLSHDEVVH--GKGSLLGKMPG-DDWQ-------------KFANLRAYYGYMWAH-PGKKLLFMGGEFGQGR  575 (726)
T ss_pred             hhcccc-CCCCCceeee--CcccHHhhCCC-CHHH-------------HHHHHHHHHHHHHHC-CCcCEeeCchhcCCCC
Confidence            344433 5568999987  44466543322 1221             122234443344444 6679999999999996


Q ss_pred             cccCCCCCCCChhhhhhccccccCCCCCCcccccCCh-hHHhhHhhcccCCCCC-----------------CC------C
Q psy9009          98 WLDFPRAGNNSSYWHARRQWNLTDDELLKYKFLNSNE-TPATLDNTVVCLSPDG-----------------RE------E  153 (258)
Q Consensus        98 WiDFPReGNn~Sy~yARRQW~L~Dd~~LrYk~L~~FD-aM~~le~~~~~L~~~~-----------------~y------e  153 (258)
                      +-|          .+.+.+|++++++  .++.|.+|. .|++|-+++..|....                 .+      +
T Consensus       576 ~~~----------~~~~l~W~~~~~~--~~~~l~~~~k~Li~Lr~~~~aL~~g~~~~~~~~~~~~~~~~~~vlaf~R~~~  643 (726)
T PRK05402        576 EWN----------HDASLDWHLLDFP--WHRGVQRLVRDLNHLYRAEPALHELDFDPEGFEWIDADDAENSVLSFLRRGK  643 (726)
T ss_pred             CCC----------ccCcCCccccCCc--chHHHHHHHHHHHHHHHhChhhhccccCcCCeeEEecccCCCCEEEEEEecC
Confidence            433          2478899998766  577899999 9999999988885311                 00      1


Q ss_pred             ---Ccc-----ccCCccccccccccCCceee
Q psy9009         154 ---TQD-----FPFGCWVNMRTPESNPLKYL  176 (258)
Q Consensus       154 ---dKV-----hp~kSy~dYrvgv~~pGkY~  176 (258)
                         +++     .....+.+|+|++..+|+|+
T Consensus       644 ~~~~~vlvv~N~~~~~~~~y~i~~p~~g~~~  674 (726)
T PRK05402        644 DDGEPLLVVCNFTPVPRHDYRLGVPQAGRWR  674 (726)
T ss_pred             CCCCeEEEEEeCCCCcccceEECCCCCCeEE
Confidence               223     22245678899888888887

>PRK12568 glycogen branching enzyme; Provisional

Probab=98.54  E-value=7.1e-08  Score=97.60  Aligned_cols=142  Identities=11%  Similarity=0.062  Sum_probs=91.5

Q ss_pred             cccccceecccccccccceeeeeecccccccccchhhHHHHhcChhhhcccccCCCCCcccchhHHHHHHhhhhhhcCCC
Q psy9009           4 WHNTDFKSSLTNRSVALTWVMFQSNRAGKMRTNGIFLFLLRLLDPEINRFKNTDLDFSQLFTEESTFYINNIFPIATAPF   83 (258)
Q Consensus         4 W~m~dI~~tLtNRR~~Ek~iayaEsHdQalVg~Gd~T~af~LMd~eMY~~Msv~~~~s~~id~~~~~KmirLiT~a~gGe   83 (258)
                      |+...|.++|.. .|.|+.| +.+|||+..-|+|  .    |++|     |..    +. -...+..+..--++++.-|-
T Consensus       505 ~~h~~ltf~~~y-~~~e~fv-lp~SHDEvvhgk~--s----l~~k-----mpG----d~-~~k~a~lR~~~~~~~~~PGk  566 (730)
T PRK12568        505 HHHSQLTFGLVY-AFSERFV-LPLSHDEVVHGTG--G----LLGQ-----MPG----DD-WRRFANLRAYLALMWAHPGD  566 (730)
T ss_pred             hhhhhhhhhhhh-hhhccEe-ccCCCcccccCch--h----hhhc-----CCC----CH-HHHHHHHHHHHHHHHhCCCc
Confidence            344456666665 7889887 8999999988776  3    3444     322    11 11233334333355666555


Q ss_pred             ceeeeccCcCCCCCcccCCCCCCCChhhhhhccccccCCCCCCcccccCCh-hHHhhHhhcc-------------cCCCC
Q psy9009          84 PLVCIKGNEFGHPEWLDFPRAGNNSSYWHARRQWNLTDDELLKYKFLNSNE-TPATLDNTVV-------------CLSPD  149 (258)
Q Consensus        84 GYLNFMGNEFGHPEWiDFPReGNn~Sy~yARRQW~L~Dd~~LrYk~L~~FD-aM~~le~~~~-------------~L~~~  149 (258)
                       -|.|||+|||+-.         .|++. ..-.|+|+|.+  ..+-+++|- +||+|=+...             |+...
T Consensus       567 -kLlFmG~Efgq~~---------ew~~~-~~ldW~ll~~~--~h~~~~~~~~dLn~ly~~~paL~~~d~~~~gf~wi~~~  633 (730)
T PRK12568        567 -KLLFMGAEFGQWA---------DWNHD-QSLDWHLLDGA--RHRGMQQLVGDLNAALRRTPALYRGTHRADGFDWSVAD  633 (730)
T ss_pred             -ceeeCchhhCCcc---------cccCC-CCccccccCCh--hHHHHHHHHHHHHHHHHhChhhhcccCCCCCeEEEeCC
Confidence             8999999999854         34443 34689999977  457788888 9998854443             34332


Q ss_pred             CCC---------C-----Ccc-----ccCCccccccccccCCceee
Q psy9009         150 GRE---------E-----TQD-----FPFGCWVNMRTPESNPLKYL  176 (258)
Q Consensus       150 ~~y---------e-----dKV-----hp~kSy~dYrvgv~~pGkY~  176 (258)
                      .+.         .     +.|     .....+.+||||+..+|+|+
T Consensus       634 d~~~sv~af~R~~~~~~~~~v~vV~Nft~~~~~~Y~ig~p~~G~~~  679 (730)
T PRK12568        634 DARNSVLAFIRHDPDGGGVPLLAVSNLTPQPHHDYRVGVPRAGGWR  679 (730)
T ss_pred             CCCCcEEEEEEecCCCCCCeEEEEECCCCCCccCeEECCCCCCeEE
Confidence            211         1     113     44455889999999999999

>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]

Probab=97.75  E-value=1.7e-05  Score=79.75  Aligned_cols=154  Identities=15%  Similarity=0.119  Sum_probs=95.7

Q ss_pred             CcccccceecccccccccceeeeeecccccccccchhhHHHHhcChhhhcccccCCCCCcccchhHHHHHHhhhhhhcCC
Q psy9009           3 GWHNTDFKSSLTNRSVALTWVMFQSNRAGKMRTNGIFLFLLRLLDPEINRFKNTDLDFSQLFTEESTFYINNIFPIATAP   82 (258)
Q Consensus         3 ~W~m~dI~~tLtNRR~~Ek~iayaEsHdQalVg~Gd~T~af~LMd~eMY~~Msv~~~~s~~id~~~~~KmirLiT~a~gG   82 (258)
                      .++.+.++.+|.  +...+-+.|..||||.+.|++  ++.-+|++.++.+.+..         +..+-.|     ++. -
T Consensus       399 ~~~h~~~tf~~~--y~~se~~~l~~sHDevvhGk~--sl~~rm~g~~~~~~a~l---------r~~~a~~-----~~~-P  459 (628)
T COG0296         399 KYHHGELTFGLL--YAFSENVVLPLSHDEVVHGKR--SLGERMPGDAWQKFANL---------RALAAYM-----WLH-P  459 (628)
T ss_pred             ccccCCCccccc--cccceeEeccccccceeeccc--chhccCCcchhhhHHHH---------HHHHHHH-----HhC-C
Confidence            356667777766  677888999999999998666  78778877755543321         1111111     111 2


Q ss_pred             CceeeeccCcCC---------CCCcccCCCCCCCChhhhhhccccccCCCCCCcccccCCh-hHHhhHhhcccCCCCCCC
Q psy9009          83 FPLVCIKGNEFG---------HPEWLDFPRAGNNSSYWHARRQWNLTDDELLKYKFLNSNE-TPATLDNTVVCLSPDGRE  152 (258)
Q Consensus        83 eGYLNFMGNEFG---------HPEWiDFPReGNn~Sy~yARRQW~L~Dd~~LrYk~L~~FD-aM~~le~~~~~L~~~~~y  152 (258)
                      .==|.|||+|||         +.+|.+++..-+....+.++|.-.+++.   .| -+.... .+--..+++.|+.....+
T Consensus       460 gk~LLFMG~Efgq~~e~~~~~~~~w~~L~~~~~~g~~~~~~~~~~~ln~---~y-~~~~~l~~~~~~~~~~~W~~~~~~~  535 (628)
T COG0296         460 GKPLLFMGEEFGQGREWNFFSSLDWLLLDQAVREGRHKEFRRLVRDLNA---LY-RIPDPLHEQDFQPEGFEWIDADDAE  535 (628)
T ss_pred             CceeeecchhhccCCCCcccCCCChhhhhhccccchHHHHHHHHHhhHH---hh-ccCCccchhhhcccCCceeecCchh
Confidence            223667777765         6677777765555556666666555541   11 122233 445566788888876644


Q ss_pred             C------C-------c-c-----ccCCccccccccccCCceeeecc
Q psy9009         153 E------T-------Q-D-----FPFGCWVNMRTPESNPLKYLLSK  179 (258)
Q Consensus       153 e------d-------K-V-----hp~kSy~dYrvgv~~pGkY~l~~  179 (258)
                      .      .       + +     +...+..+|++|+..+|.|++--
T Consensus       536 ~~v~af~R~l~~~~~~~lv~~~n~~~~~~~~y~~~~~~~g~~~~~l  581 (628)
T COG0296         536 NSVLAFYRRLLALRHEHLVVVNNFTPVPRVDYRVGVPVAGRWREVL  581 (628)
T ss_pred             hhHHHHHHHHhhcCCceEEEEeCCCCCcccccccCCcccccEEEec
Confidence            1      1       1 1     56678999999999999998533

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	258
3aml_A	755	Structure Of The Starch Branching Enzyme I (Bei) Fr		3e-12
3amk_A	702	Structure Of The Starch Branching Enzyme I (Bei) Fr		3e-12

>pdb|3AML|A Chain A, Structure Of The Starch Branching Enzyme I (Bei) From Oryza Sativa L Length = 755

Iteration: 1
 Score = 68.6 bits (166), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 28/43 (65%), Positives = 35/43 (81%)
Query: 90  GNEFGHPEWLDFPRAGNNSSYWHARRQWNLTDDELLKYKFLNS 132
           GNEFGHPEW+DFPR GNN SY   RRQW+L D + L+YK++N+
Sbjct: 527 GNEFGHPEWIDFPREGNNWSYDKCRRQWSLVDTDHLRYKYMNA 569

>pdb|3AMK|A Chain A, Structure Of The Starch Branching Enzyme I (Bei) From Oryza Sativa L Length = 702

Iteration: 1
 Score = 68.6 bits (166), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 28/43 (65%), Positives = 35/43 (81%)
Query: 90  GNEFGHPEWLDFPRAGNNSSYWHARRQWNLTDDELLKYKFLNS 132
           GNEFGHPEW+DFPR GNN SY   RRQW+L D + L+YK++N+
Sbjct: 527 GNEFGHPEWIDFPREGNNWSYDKCRRQWSLVDTDHLRYKYMNA 569

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	258
3aml_A	755	OS06G0726400 protein; starch-branching, transferas	4e-18

>3aml_A OS06G0726400 protein; starch-branching, transferase; HET: EPE; 1.70A {Oryza sativa japonica group} PDB: 3amk_A Length = 755

 Score = 82.4 bits (204), Expect = 4e-18
 Identities = 28/42 (66%), Positives = 34/42 (80%)

Query: 90  GNEFGHPEWLDFPRAGNNSSYWHARRQWNLTDDELLKYKFLN 131
           GNEFGHPEW+DFPR GNN SY   RRQW+L D + L+YK++N
Sbjct: 527 GNEFGHPEWIDFPREGNNWSYDKCRRQWSLVDTDHLRYKYMN 568

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	258
3aml_A	755	OS06G0726400 protein; starch-branching, transferas	99.94
3ucq_A	655	Amylosucrase; thermostability, amylose synthesis,	98.67
1m7x_A	617	1,4-alpha-glucan branching enzyme; alpha/beta barr	98.15
3k1d_A	722	1,4-alpha-glucan-branching enzyme; mycobacterium t	97.56
1gjw_A	637	Maltodextrin glycosyltransferase; alpha-amylase, m	97.2
2fhf_A	1083	Pullulanase; multiple domain, beta-alpha-barrel, a	96.73
4aio_A	884	Limit dextrinase; hydrolase, pullulanase, glycosid	94.81
1bf2_A	750	Isoamylase; hydrolase, glycosidase, debranching en	94.66
3aj7_A	589	Oligo-1,6-glucosidase; (beta/alpha)8-barrel, hydro	93.58
3zss_A	695	Putative glucanohydrolase PEP1A; alpha-glucan bios	92.55
1wzl_A	585	Alpha-amylase II; pullulan, GH-13, alpha-amylase f	91.15
2wsk_A	657	Glycogen debranching enzyme; carbohydrate metaboli	87.85
1ji1_A	637	Alpha-amylase I; beta/alpha barrel, hydrolase; 1.6	83.73
3vgf_A	558	Malto-oligosyltrehalose trehalohydrolase; alpha/be	82.53
2wan_A	921	Pullulanase; hydrolase, glycoside hydrolase, polys	81.12

>3aml_A OS06G0726400 protein; starch-branching, transferase; HET: EPE; 1.70A {Oryza sativa japonica group} PDB: 3amk_A

Probab=99.94  E-value=3.2e-28  Score=237.69  Aligned_cols=172  Identities=27%  Similarity=0.425  Sum_probs=154.6

Q ss_pred             CcccccceecccccccccceeeeeecccccccccchhhHHHHhcChhhhcccccCCCCCcccch-hHHHHHHhhhhhhcC
Q psy9009           3 GWHNTDFKSSLTNRSVALTWVMFQSNRAGKMRTNGIFLFLLRLLDPEINRFKNTDLDFSQLFTE-ESTFYINNIFPIATA   81 (258)
Q Consensus         3 ~W~m~dI~~tLtNRR~~Ek~iayaEsHdQalVg~Gd~T~af~LMd~eMY~~Msv~~~~s~~id~-~~~~KmirLiT~a~g   81 (258)
                      .|++.+|..+|+++|+++++|.|.+||||..+  |+++++|+|+|++||..|+.+.+.++++++ .+.+||++++++++.
T Consensus       441 ~~~~~~l~~~l~~~~~~~~~vnf~~nHD~~r~--g~~~~~f~l~d~~~~~~~~~l~~~~~~~~~~~~~~k~a~~~llt~p  518 (755)
T 3aml_A          441 KWSMSEIVQTLTNRRYTEKCIAYAESHDQSIV--GDKTIAFLLMDKEMYTGMSDLQPASPTINRGIALQKMIHFITMALG  518 (755)
T ss_dssp             GCCHHHHHHHHHCSCTTSCEEECSCCCCTTSC--CCBCHHHHHHTTHHHHSCBSSSCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHhccCchhheehhhcCCcccc--ccccccccccchhhhhhhhhccccchhhhhhHHHHHHHHHHHHHCC
Confidence            58888999999999999999999999999988  566788999999999999998888877764 456899999999999


Q ss_pred             CCceeeeccCcCCCCCcccCCCCCCCChhhhhhccccccCCCCCCcccccCCh-hHHhhHhhcccCCCCCCC------CC
Q psy9009          82 PFPLVCIKGNEFGHPEWLDFPRAGNNSSYWHARRQWNLTDDELLKYKFLNSNE-TPATLDNTVVCLSPDGRE------ET  154 (258)
Q Consensus        82 GeGYLNFMGNEFGHPEWiDFPReGNn~Sy~yARRQW~L~Dd~~LrYk~L~~FD-aM~~le~~~~~L~~~~~y------ed  154 (258)
                      |..+|+|||+|||+|+|+||||+||+|||.++|++|+++|+++++++.|.+|. +|++|.+++..|.....+      ++
T Consensus       519 G~P~lly~G~E~G~~~~~~~p~~g~~~~~~~~r~~W~~~~~~~~~~~~l~~~~r~Li~lRk~~paL~~G~~~~~~~~~~~  598 (755)
T 3aml_A          519 GDGYLNFMGNEFGHPEWIDFPREGNNWSYDKCRRQWSLVDTDHLRYKYMNAFDQAMNALEEEFSFLSSSKQIVSDMNEKD  598 (755)
T ss_dssp             CSEEEEETTGGGTCCSBCCCCCGGGTTCCTTSSCCHHHHHCTTBSHHHHHHHHHHHHHHHHHHCGGGCCCEEEEEEETTT
T ss_pred             CCEEEEeCchhcCCcCcccCcccCCCCCcccccCCcccccCccchhHHHHHHHHHHHHHHHhChhhcCCCEEEEeecCCC
Confidence            99999999999999999999999999999999999999999999999999999 999999999888766432      23


Q ss_pred             cc--------------ccCCccccccccccCCceee
Q psy9009         155 QD--------------FPFGCWVNMRTPESNPLKYL  176 (258)
Q Consensus       155 KV--------------hp~kSy~dYrvgv~~pGkY~  176 (258)
                      +|              +|.+++.+|+||+..+|+|+
T Consensus       599 ~vlaf~R~~llVv~N~s~~~~~~~~~i~vp~~g~~~  634 (755)
T 3aml_A          599 KVIVFERGDLVFVFNFHPNKTYKGYKVGCDLPGKYR  634 (755)
T ss_dssp             TEEEEEETTEEEEEECCSSCCEEEEEEEESSCSEEE
T ss_pred             cEEEEEECCEEEEEECCCCCccceeEECCCCCCeEE
Confidence            32              77778999999999999997

>3ucq_A Amylosucrase; thermostability, amylose synthesis, sucrose isomerization, beta/alpha-barrel, carbohydrate binding, transferase; 1.97A {Deinococcus geothermalis} PDB: 3uer_A*

Probab=98.67  E-value=1.7e-09  Score=103.19  Aligned_cols=82  Identities=13%  Similarity=0.145  Sum_probs=66.9

Q ss_pred             HHHHHHhhhhhhcCCCceeeeccCcCCCCCcccCCC----CCCCChhhhhhccccccCCCCCCccc----ccCCh-hHHh
Q psy9009          68 STFYINNIFPIATAPFPLVCIKGNEFGHPEWLDFPR----AGNNSSYWHARRQWNLTDDELLKYKF----LNSNE-TPAT  138 (258)
Q Consensus        68 ~~~KmirLiT~a~gGeGYLNFMGNEFGHPEWiDFPR----eGNn~Sy~yARRQW~L~Dd~~LrYk~----L~~FD-aM~~  138 (258)
                      ..++|.+.|++++.|-..| |||+|||+++|+++++    .|++.+++..+.||+.++.+.....-    +.+|. .|++
T Consensus       482 ~r~~la~aill~~pGiP~i-y~GdE~G~~nd~~~~~d~~~~~~~R~~~R~~~~w~~v~~~~~d~~s~~~~v~~~~~~Li~  560 (655)
T 3ucq_A          482 RRLLLLHTVILGFGGVPLL-YMGDELALLNDYAFEDVPEHAPDNRWVHRPQMDWALAERVRQEPSSPAGRVNTGLRHLLR  560 (655)
T ss_dssp             HHHHHHHHHHHHSSSEEEE-ETTGGGTCCCCGGGGGSTTTTTCGGGGGCCCCCHHHHHHHHHCTTSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCeeEE-EchHhhcCCCchhhhccccccCcccccccCCCChHHHHHHhcCCCChHHHHHHHHHHHHH
Confidence            3478999999999999988 9999999999999987    57778888888899886443333323    36777 9999


Q ss_pred             hHhhcccCCCCC
Q psy9009         139 LDNTVVCLSPDG  150 (258)
Q Consensus       139 le~~~~~L~~~~  150 (258)
                      +.+++.+|+...
T Consensus       561 lRk~~paf~~~~  572 (655)
T 3ucq_A          561 VRRDTPQLHASI  572 (655)
T ss_dssp             HHHTCGGGCTTS
T ss_pred             HHHhCccccCCC
Confidence            999999998764

>1m7x_A 1,4-alpha-glucan branching enzyme; alpha/beta barrel, beta sandwich, transferase; 2.30A {Escherichia coli} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 3o7y_A* 3o7z_A*

Probab=98.15  E-value=4.3e-06  Score=79.16  Aligned_cols=104  Identities=11%  Similarity=0.012  Sum_probs=68.1

Q ss_pred             ccccceeeeeecccccccccchhhHHHHhcChhhhcccccCCCCCcccchhHHHHHHhhhhhhcCCCceeeeccCcCCCC
Q psy9009          17 SVALTWVMFQSNRAGKMRTNGIFLFLLRLLDPEINRFKNTDLDFSQLFTEESTFYINNIFPIATAPFPLVCIKGNEFGHP   96 (258)
Q Consensus        17 R~~Ek~iayaEsHdQalVg~Gd~T~af~LMd~eMY~~Msv~~~~s~~id~~~~~KmirLiT~a~gGeGYLNFMGNEFGHP   96 (258)
                      .+.+..| +.+||||.-.|  ..+++-++-+.+              ..+.+..|+.-.++++..| --+.|||.|||++
T Consensus       403 ~~~~~fv-~~~nHD~~~~g--~~~~~~~~~g~~--------------~~~~~~~r~a~~~~l~~pG-~P~iy~G~E~G~~  464 (617)
T 1m7x_A          403 NYTENFV-LPLSHDEVVHG--KKSILDRMPGDA--------------WQKFANLRAYYGWMWAFPG-KKLLFMGNEFAQG  464 (617)
T ss_dssp             TTTSCEE-EEECGGGSSTT--SCCHHHHSCSSH--------------HHHHHHHHHHHHHHHHSSS-EEEEETTTTTTCS
T ss_pred             ccccceE-EEeCCCCcccC--ccchhhhCCCcH--------------HHHHHHHHHHHHHHHHCCC-CcEEEcchhcCCC
Confidence            3444444 45999998764  445543332221              1123445565556665544 4788999999999


Q ss_pred             CcccCCCCCCCChhhhhhccccccCCCCCCcccccCCh-hHHhhHhhcccCCC
Q psy9009          97 EWLDFPRAGNNSSYWHARRQWNLTDDELLKYKFLNSNE-TPATLDNTVVCLSP  148 (258)
Q Consensus        97 EWiDFPReGNn~Sy~yARRQW~L~Dd~~LrYk~L~~FD-aM~~le~~~~~L~~  148 (258)
                      ..-+          +..+.+|++.++..-..+-|.+|- .|++|-+++..|..
T Consensus       465 ~~~~----------~~~~~~W~~~~~~~~~~~~l~~~~~~L~~lR~~~~al~~  507 (617)
T 1m7x_A          465 REWN----------HDASLDWHLLEGGDNWHHGVQRLVRDLNLTYRHHKAMHE  507 (617)
T ss_dssp             SCCC----------TTSCCCGGGGCSSCCHHHHHHHHHHHHHHHHTTCGGGTS
T ss_pred             CCCC----------cccccChhhccccchhhHHHHHHHHHHHHHHhhCHHhhc
Confidence            6322          236789999887545677888899 99999988777664

>3k1d_A 1,4-alpha-glucan-branching enzyme; mycobacterium tuberculosis H37RV, mesophilic human pathogen, RV1326C gene, glycosyl transferase; 2.33A {Mycobacterium tuberculosis}

Probab=97.56  E-value=0.00017  Score=71.21  Aligned_cols=130  Identities=10%  Similarity=0.005  Sum_probs=79.2

Q ss_pred             cccceeeeeecccccccccchhhHHHHhcChhhhcccccCCCCCcccchhHHHHHHhhhhhhcCCCceeeeccCcCCCCC
Q psy9009          18 VALTWVMFQSNRAGKMRTNGIFLFLLRLLDPEINRFKNTDLDFSQLFTEESTFYINNIFPIATAPFPLVCIKGNEFGHPE   97 (258)
Q Consensus        18 ~~Ek~iayaEsHdQalVg~Gd~T~af~LMd~eMY~~Msv~~~~s~~id~~~~~KmirLiT~a~gGeGYLNFMGNEFGHPE   97 (258)
                      +.|+ ..+..|||+..-|+|  .++.++.+.             . -...+..++.-.++++. .+..+.|||.|||.+.
T Consensus       512 ~~e~-f~l~~sHD~~~~Gk~--~ll~~~~gd-------------~-~~~~a~lr~~~a~~lt~-PG~plif~G~E~G~~~  573 (722)
T 3k1d_A          512 FSEN-YVLPLSHDEVVHGKG--TLWGRMPGN-------------N-HVKAAGLRSLLAYQWAH-PGKQLLFMGQEFGQRA  573 (722)
T ss_dssp             TSSC-EEEEECGGGSSTTSC--CHHHHSCSS-------------H-HHHHHHHHHHHHHHHHS-SSEEEEETTGGGTCCS
T ss_pred             cccc-eecccCcchhccCcc--chhhhCCCc-------------H-HHHHHHHHHHHHHHHhC-CCeeEEeccccccccc
Confidence            3444 335579999987666  444333232             0 00122233333444444 3458999999999984


Q ss_pred             cccCCCCCCCChhhhhhccccccCCCCCCcccccCCh-hHHhhHhhcccCCCCC-------------------CC-----
Q psy9009          98 WLDFPRAGNNSSYWHARRQWNLTDDELLKYKFLNSNE-TPATLDNTVVCLSPDG-------------------RE-----  152 (258)
Q Consensus        98 WiDFPReGNn~Sy~yARRQW~L~Dd~~LrYk~L~~FD-aM~~le~~~~~L~~~~-------------------~y-----  152 (258)
                      .-|          .....+|++.+.+. ..+-|.+|- .|++|-+++.-|....                   +|     
T Consensus       574 e~~----------~~~~l~W~~~~~~~-~~~~l~~~~~~Ln~lR~~~paL~~~d~~~~gf~wi~~~d~~~~viaf~R~~~  642 (722)
T 3k1d_A          574 EWS----------EQRGLDWFQLDENG-FSNGIQRLVRDINDIYRCHPALWSLDTTPEGYSWIDANDSANNVLSFMRYGS  642 (722)
T ss_dssp             CCC----------TTTCCCGGGGGSSS-SHHHHHHHHHHHHHHHHHCGGGTTTTTSGGGEEEEEEEETTTTEEEEEEECT
T ss_pred             ccc----------cccccCcccccCcc-ccHHHHHHHHHHHHHHHhChhhhccccCCCceEEEEccCCCCCEEEEEEEcC
Confidence            322          34678999998763 156677787 8999887777664321                   11     


Q ss_pred             -CCcc-----ccCCccccccccccCCceee
Q psy9009         153 -ETQD-----FPFGCWVNMRTPESNPLKYL  176 (258)
Q Consensus       153 -edKV-----hp~kSy~dYrvgv~~pGkY~  176 (258)
                       ++.+     .......+|+||+..+|+|+
T Consensus       643 ~~~~llvv~N~s~~~~~~y~igvp~~G~~~  672 (722)
T 3k1d_A          643 DGSVLACVFNFAGAEHRDYRLGLPRAGRWR  672 (722)
T ss_dssp             TSCEEEEEEECSSSCEEEEEEEESSCEEEE
T ss_pred             CCCEEEEEEeCCCCCceeEEeccCCCCEEE
Confidence             1122     22233579999999999987

>1gjw_A Maltodextrin glycosyltransferase; alpha-amylase, maltosyltransferase; HET: MAL GLC; 2.1A {Thermotoga maritima} SCOP: b.71.1.1 c.1.8.1 PDB: 1gju_A*

Probab=97.20  E-value=0.00032  Score=66.42  Aligned_cols=112  Identities=7%  Similarity=-0.015  Sum_probs=72.9

Q ss_pred             CcccccceecccccccccceeeeeecccccccccchhhHHHHhcChhhhcccccCCCCCcccchhHHHHHHhhhhhhcCC
Q psy9009           3 GWHNTDFKSSLTNRSVALTWVMFQSNRAGKMRTNGIFLFLLRLLDPEINRFKNTDLDFSQLFTEESTFYINNIFPIATAP   82 (258)
Q Consensus         3 ~W~m~dI~~tLtNRR~~Ek~iayaEsHdQalVg~Gd~T~af~LMd~eMY~~Msv~~~~s~~id~~~~~KmirLiT~a~gG   82 (258)
                      .|++.++.+.|.  +.....|.|.+||||.-+  .+      +++                  +...+|+..++++++..
T Consensus       443 ~~~~~~~~~~l~--~~~~~~v~fl~nHD~~Rl--~~------~~~------------------~~~~~~~a~~l~l~~~~  494 (637)
T 1gjw_A          443 VEEIGKLPDIAE--ELVLPFLASVETPDTPRI--AT------RKY------------------ASKMKKLAPFVTYFLPN  494 (637)
T ss_dssp             TTTGGGHHHHHH--TCSSCEEECSCCTTSCCG--GG------STT------------------HHHHHHHHHHHHHTSTT
T ss_pred             HHHHHHHHHhhh--ccchHHhhcccCCCcccc--cc------ccc------------------CcHHHHHHHHHHHHcCC
Confidence            477788777773  678899999999999643  11      110                  12346777777887764


Q ss_pred             CceeeeccCcCCCCCcccCCCCCCCChhhhhhcccc----------ccCCCCCCc----ccccCCh-hHHhhHhhcccC
Q psy9009          83 FPLVCIKGNEFGHPEWLDFPRAGNNSSYWHARRQWN----------LTDDELLKY----KFLNSNE-TPATLDNTVVCL  146 (258)
Q Consensus        83 eGYLNFMGNEFGHPEWiDFPReGNn~Sy~yARRQW~----------L~Dd~~LrY----k~L~~FD-aM~~le~~~~~L  146 (258)
                      +--+-|||.|||++.++++   |++ .-.++||.|.          +.+...|.+    +-|.+|- .|++|-+++..|
T Consensus       495 GiP~iy~GdE~G~~~p~~~---g~~-~d~~~R~~~~~~Dp~~~~~~~~~~~~l~W~~~~~~l~~~~~~Li~lRk~~paL  569 (637)
T 1gjw_A          495 SIPYVNTGQEIGEKQPMNL---GLD-TDPNLRKVLSPTDEFFGKLAFFDHYVLHWDSPDRGVLNFIKKLIKVRHEFLDF  569 (637)
T ss_dssp             EEEEEETTGGGTCCSCSCC---CSS-CCGGGGGCSCTTSTTTTCCTTTSCCCCCTTSCCHHHHHHHHHHHHHHHHTHHH
T ss_pred             CCcEEEeeeecCccCcccc---CCC-CCccccccccccCccccccccccccccchhhcChHHHHHHHHHHHHHhhChhh
Confidence            5568899999999987763   432 1346777653          222222222    3466666 888888777666

>2fhf_A Pullulanase; multiple domain, beta-alpha-barrel, alpha-amylase-family, complex with maltotetraose, hydrolase; HET: GLC; 1.65A {Klebsiella aerogenes} SCOP: b.1.18.2 b.1.18.2 b.3.1.3 b.71.1.1 c.1.8.1 PDB: 2fh6_A* 2fh8_A* 2fhb_A* 2fhc_A* 2fgz_A*

Probab=96.73  E-value=0.0004  Score=71.45  Aligned_cols=118  Identities=11%  Similarity=0.052  Sum_probs=74.5

Q ss_pred             ccccceeeeeecccccccccchhhHHHHhcChhhhcccccCCCCCcccchhHHHHHHhhhhhhcCCCceeeeccCcCCCC
Q psy9009          17 SVALTWVMFQSNRAGKMRTNGIFLFLLRLLDPEINRFKNTDLDFSQLFTEESTFYINNIFPIATAPFPLVCIKGNEFGHP   96 (258)
Q Consensus        17 R~~Ek~iayaEsHdQalVg~Gd~T~af~LMd~eMY~~Msv~~~~s~~id~~~~~KmirLiT~a~gGeGYLNFMGNEFGHP   96 (258)
                      |.....|.|.++||+.           +|+|.-.|.+..   +... -.+.+..||.-.+.++.-| --+-++|.|||+.
T Consensus       821 ~~p~~~infl~nHD~~-----------rL~D~vs~~~~~---~~~~-~~r~r~~kla~alLlts~G-iP~IY~GdEiG~t  884 (1083)
T 2fhf_A          821 ADPTEVVNYVSKHDNQ-----------TLWDMISYKAAQ---EADL-DTRVRMQAVSLATVMLGQG-IAFDQQGSELLRS  884 (1083)
T ss_dssp             SSGGGEEECSCCSSSS-----------CHHHHHHHHSCT---TCCH-HHHHHHHHHHHHHHHTSSS-EEEEETTGGGTCC
T ss_pred             cCccceeeeeccCCcc-----------hhhhhhhhhcCC---ccch-HHHHHHHHHHHHHHHHCCC-CcEEEeehhcCCc
Confidence            3456789999999984           344443343321   1111 0123334444334444433 3666999999998


Q ss_pred             C--------------cccCCCCCCCChhhhhh-----ccccccCC---CCC-----CcccccCCh-hHHhhHhhcccCCC
Q psy9009          97 E--------------WLDFPRAGNNSSYWHAR-----RQWNLTDD---ELL-----KYKFLNSNE-TPATLDNTVVCLSP  148 (258)
Q Consensus        97 E--------------WiDFPReGNn~Sy~yAR-----RQW~L~Dd---~~L-----rYk~L~~FD-aM~~le~~~~~L~~  148 (258)
                      .              ++|+++..|+||..+.+     ..|.+++.   ..+     ..+-|.+|- .|++|-+.+..|..
T Consensus       885 ~~gn~n~Y~~~d~~n~~dW~~~dN~ws~g~p~~~~~~~~W~~~~~~~~~nv~~q~~d~~sl~~f~r~LI~LRk~~paLr~  964 (1083)
T 2fhf_A          885 KSFTRDSYDSGDWFNRVDYSLQDNNYNVGMPRSSDDGSNYDIIARVKDAVATPGETELKQMTAFYQELTALRKSSPLFTL  964 (1083)
T ss_dssp             CTTCSCCTTSHHHHHCCCTTCSCCSCSSSCCCHHHHGGGHHHHHHHTTSSCCCCHHHHHHHHHHHHHHHHHHTSCGGGGC
T ss_pred             CCcccCccccccccccccccccCccccccccccccccCCchhccccccccccccccCHHHHHHHHHHHHHHHhhCHHhcC
Confidence            4              88888888888776544     67876531   222     246677888 99999999888876


Q ss_pred             CC
Q psy9009         149 DG  150 (258)
Q Consensus       149 ~~  150 (258)
                      ..
T Consensus       965 g~  966 (1083)
T 2fhf_A          965 GD  966 (1083)
T ss_dssp             CC
T ss_pred             Cc
Confidence            54

>4aio_A Limit dextrinase; hydrolase, pullulanase, glycoside hydrolase family 13; 1.90A {Hordeum vulgare} PDB: 2x4c_A* 2y4s_A* 2y5e_A* 2x4b_A

Probab=94.81  E-value=0.022  Score=54.11  Aligned_cols=83  Identities=12%  Similarity=0.041  Sum_probs=49.6

Q ss_pred             hhHHHHHHhhhhhhcCCCceeeeccCcCCCCC--------------cccCCCCCCCChhhhhhc-----cccccC-----
Q psy9009          66 EESTFYINNIFPIATAPFPLVCIKGNEFGHPE--------------WLDFPRAGNNSSYWHARR-----QWNLTD-----  121 (258)
Q Consensus        66 ~~~~~KmirLiT~a~gGeGYLNFMGNEFGHPE--------------WiDFPReGNn~Sy~yARR-----QW~L~D-----  121 (258)
                      +.+..||.-.+.+++-|--+| |||.|+|++.              |+|+.|..++|+......     .|..+.     
T Consensus       662 r~~r~kla~alllt~pG~P~I-Y~GdEiG~t~~~~~n~y~~~~~~~~~D~~R~p~~W~~~~~~g~~~~~~w~~~~~~~~~  740 (884)
T 4aio_A          662 RCRINHLASSMMALSQGIPFF-HAGDEILRSKSIDRDSYNSGDWFNKLDFTYETNNWGVGLPPSEKNEDNWPLMKPRLEN  740 (884)
T ss_dssp             HHHHHHHHHHHHHTSBSEEEE-ETTGGGTCCCTTCSCGGGSHHHHHCCCTTCSCCSCSSCCCCHHHHGGGHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHcCCCcEE-EcccccCccCCCCcccccCcchhcccccccCcCCcCcccCccccCCcccccccccccc
Confidence            344567888888888899988 9999999874              556666666555322111     121111     


Q ss_pred             ----CCCCCcccccCCh-hHHhhHhhcccCCCC
Q psy9009         122 ----DELLKYKFLNSNE-TPATLDNTVVCLSPD  149 (258)
Q Consensus       122 ----d~~LrYk~L~~FD-aM~~le~~~~~L~~~  149 (258)
                          .+.-...-+.+|- .|++|-+.+.-|...
T Consensus       741 ~~v~~q~~d~~sl~~~yr~Li~LRk~~paL~~g  773 (884)
T 4aio_A          741 PSFKPAKGHILAALDSFVDILKIRYSSPLFRLS  773 (884)
T ss_dssp             GGGSCCHHHHHHHHHHHHHHHHHHTTCGGGGCC
T ss_pred             chhhhhhcchHHHHHHHHHHHHHHhcChhhhcC
Confidence                1100112244566 788888777766554

>1bf2_A Isoamylase; hydrolase, glycosidase, debranching enzyme; 2.00A {Pseudomonas amyloderamosa} SCOP: b.1.18.2 b.71.1.1 c.1.8.1

Probab=94.66  E-value=0.016  Score=56.66  Aligned_cols=74  Identities=15%  Similarity=0.150  Sum_probs=53.3

Q ss_pred             hHHHHHHhhhhhhcCCCceeeeccCcCCCCCcccCCCCCCCChhhhh----hccccccCCCCCCcccccCCh-hHHhhHh
Q psy9009          67 ESTFYINNIFPIATAPFPLVCIKGNEFGHPEWLDFPRAGNNSSYWHA----RRQWNLTDDELLKYKFLNSNE-TPATLDN  141 (258)
Q Consensus        67 ~~~~KmirLiT~a~gGeGYLNFMGNEFGHPEWiDFPReGNn~Sy~yA----RRQW~L~Dd~~LrYk~L~~FD-aM~~le~  141 (258)
                      .+..|+...++++.-|-- +-|||.||||..      .||+.+|...    +.+|++.+    ..+-|.+|= .|++|-+
T Consensus       559 ~~~~r~a~a~ll~~~G~P-~i~~GdE~g~t~------~G~~n~y~~~~~i~~~dW~~~~----~~~~l~~~~~~Li~lRk  627 (750)
T 1bf2_A          559 RRAARTGMAFEMLSAGTP-LMQGGDEYLRTL------QCNNNAYNLDSSANWLTYSWTT----DQSNFYTFAQRLIAFRK  627 (750)
T ss_dssp             HHHHHHHHHHHHHSSSEE-EEETTGGGTCCC------TTCSCCTTCCSTTTSCCCCCCH----HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCcc-eeeechhhccCC------CCCCCcccCCCcccccCCCccc----cchHHHHHHHHHHHHHh
Confidence            345677777777766655 459999999975      5888887543    34677753    345677777 9999999


Q ss_pred             hcccCCCCCC
Q psy9009         142 TVVCLSPDGR  151 (258)
Q Consensus       142 ~~~~L~~~~~  151 (258)
                      ++..|.....
T Consensus       628 ~~pal~~~~~  637 (750)
T 1bf2_A          628 AHPALRPSSW  637 (750)
T ss_dssp             HCGGGSCSSC
T ss_pred             hChhhcCCcc
Confidence            9999886643

>3aj7_A Oligo-1,6-glucosidase; (beta/alpha)8-barrel, hydrolase; 1.30A {Saccharomyces cerevisiae} PDB: 3a4a_A* 3a47_A 3axi_A* 3axh_A*

Probab=93.58  E-value=0.047  Score=51.49  Aligned_cols=77  Identities=16%  Similarity=0.150  Sum_probs=50.1

Q ss_pred             Ccccccceecccccc--cc---cceeeeeecccccccccchhhHHHHhcChhhhcccccCCCCCcccchhHHHHHHhhhh
Q psy9009           3 GWHNTDFKSSLTNRS--VA---LTWVMFQSNRAGKMRTNGIFLFLLRLLDPEINRFKNTDLDFSQLFTEESTFYINNIFP   77 (258)
Q Consensus         3 ~W~m~dI~~tLtNRR--~~---Ek~iayaEsHdQalVg~Gd~T~af~LMd~eMY~~Msv~~~~s~~id~~~~~KmirLiT   77 (258)
                      .|++.+++..|....  +.   ...+.|.+|||+.-+       +=++-+.            +. -.+....|+.-.++
T Consensus       320 ~~~~~~l~~~l~~~~~~~~~~~~~~~~fl~NHD~~R~-------~~~~~~~------------~~-~~~~~~~k~~~~~l  379 (589)
T 3aj7_A          320 PFELKDWKIALAELFRYINGTDCWSTIYLENHDQPRS-------ITRFGDD------------SP-KNRVISGKLLSVLL  379 (589)
T ss_dssp             CCCHHHHHHHHHTTTGGGTTSSCCCEECSCCTTSCCH-------HHHHSCC------------ST-TTHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHhcccCCCcccccccCCCCcch-------HHHhCCC------------ch-hhHHHHHHHHHHHH
Confidence            456677777776543  22   235679999999732       1111111            01 01345678888899


Q ss_pred             hhcCCCceeeeccCcCCCCCccc
Q psy9009          78 IATAPFPLVCIKGNEFGHPEWLD  100 (258)
Q Consensus        78 ~a~gGeGYLNFMGNEFGHPEWiD  100 (258)
                      +++-|--++ |+|.|+|.+...+
T Consensus       380 lt~pG~P~i-y~G~E~G~~~~~~  401 (589)
T 3aj7_A          380 SALTGTLYV-YQGQELGQINFKN  401 (589)
T ss_dssp             HTSSSEEEE-ETTGGGTCCCCCS
T ss_pred             HHCCCCcEE-EcChhcccCCCCC
Confidence            999998888 9999999998643

>3zss_A Putative glucanohydrolase PEP1A; alpha-glucan biosynthesis, glycoside hydrolase FA; 1.80A {Streptomyces coelicolor} PDB: 3zst_A* 3zt5_A* 3zt6_A* 3zt7_A*

Probab=92.55  E-value=0.051  Score=53.36  Aligned_cols=77  Identities=12%  Similarity=-0.136  Sum_probs=55.8

Q ss_pred             HHhhhhhhcCCCceeeeccCcCCCCCcccCCCCCCCChhhhhhccccccCCCCCCcccccCCh-hHHhhHhhcccCCCC
Q psy9009          72 INNIFPIATAPFPLVCIKGNEFGHPEWLDFPRAGNNSSYWHARRQWNLTDDELLKYKFLNSNE-TPATLDNTVVCLSPD  149 (258)
Q Consensus        72 mirLiT~a~gGeGYLNFMGNEFGHPEWiDFPReGNn~Sy~yARRQW~L~Dd~~LrYk~L~~FD-aM~~le~~~~~L~~~  149 (258)
                      .++++++.+..+.++-|+|.|+|.....|...++..++..|+||.|+.-+.. -.-+-|.+|= .|++|-+++..|...
T Consensus       515 kla~all~tl~GiP~IYyGdE~G~~g~~dp~~~ey~d~e~~~r~p~~W~~~~-~~~~~l~~~ik~Li~LRk~~paL~~g  592 (695)
T 3zss_A          515 EVRAVLAATLSPTWGIYSGYELCENTPLREGSEEYLDSEKYQLKPRDWTRAA-REGTTIAPLVTRLNTIRRENPALRQL  592 (695)
T ss_dssp             HHHHHHHHHHCSEEEEETTGGGTCCCBSSTTCCSBTTCTTSSCCCCCHHHHH-HHTCSCHHHHHHHHHHHHHCGGGGCS
T ss_pred             HHHHHHHHhcCCCcEEEcCeeccccCCCCCCccccccccccccCCCCccccc-cccchHHHHHHHHHHHHHhCHHhcCC
Confidence            4456666677778899999999999988877777777878887655433210 0113466777 999999999988764

>1wzl_A Alpha-amylase II; pullulan, GH-13, alpha-amylase family, hydrolase; 2.00A {Thermoactinomyces vulgaris} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 1ji2_A 1bvz_A 1vfk_A* 3a6o_A* 1wzm_A 1jf6_A 1wzk_A 2d2o_A* 1jib_A* 1jl8_A* 1vb9_A* 1g1y_A* 1vfo_A* 1vfm_A* 1vfu_A* 1jf5_A

Probab=91.15  E-value=0.1  Score=48.88  Aligned_cols=103  Identities=18%  Similarity=0.229  Sum_probs=63.7

Q ss_pred             ccccceeccccc--ccc----cceeeeeecccccccccchhhHHHHhcChhhhcccccCCCCCcccchhHHHHHHhhhhh
Q psy9009           5 HNTDFKSSLTNR--SVA----LTWVMFQSNRAGKMRTNGIFLFLLRLLDPEINRFKNTDLDFSQLFTEESTFYINNIFPI   78 (258)
Q Consensus         5 ~m~dI~~tLtNR--R~~----Ek~iayaEsHdQalVg~Gd~T~af~LMd~eMY~~Msv~~~~s~~id~~~~~KmirLiT~   78 (258)
                      +..++...|+..  +|.    ...+.|.+|||+.-       ++ ..|+.                 .....|+.-.+++
T Consensus       390 ~~~~~~~~l~~~~~~y~~~~~~~~~~~~~nHD~~r-------~~-~~~~~-----------------~~~~~~~a~~~~~  444 (585)
T 1wzl_A          390 HAERFDAELTRARMLYPEQAAQGLWNLLDSHDTER-------FL-TSCGG-----------------NEAKFRLAVLFQM  444 (585)
T ss_dssp             CHHHHHHHHHHHHTTSCHHHHTTCEEESCCTTSCC-------HH-HHTTT-----------------CHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhcchhhhccceEecCCCCchh-------hH-HhcCC-----------------cHHHHHHHHHHHH
Confidence            344455555542  443    34588999999853       11 11211                 1245677777777


Q ss_pred             hcCCCceeeeccCcCCCCCcccCCCCCCCChhhhhhcc--ccccCCCCCCcccccCCh-hHHhhHhhcccCC
Q psy9009          79 ATAPFPLVCIKGNEFGHPEWLDFPRAGNNSSYWHARRQ--WNLTDDELLKYKFLNSNE-TPATLDNTVVCLS  147 (258)
Q Consensus        79 a~gGeGYLNFMGNEFGHPEWiDFPReGNn~Sy~yARRQ--W~L~Dd~~LrYk~L~~FD-aM~~le~~~~~L~  147 (258)
                      +.-|-- +-|||.|||....-|          ..+|+.  |+..+.    .+-|.+|= .|++|-+++..|.
T Consensus       445 ~~pG~P-~iy~G~E~g~~~~~d----------~~~r~~~~W~~~~~----~~~l~~~~~~Li~lRk~~~al~  501 (585)
T 1wzl_A          445 TYLGTP-LIYYGDEIGMAGATD----------PDCLRPMIWEEKEQ----NRGLFEFYKELIRLRHRLASLT  501 (585)
T ss_dssp             HSSSEE-EEETTGGGTCCCCST----------TGGGCCCCCCGGGS----CHHHHHHHHHHHHHHHHCHHHH
T ss_pred             hCCCCc-EEEeecccCcCCCCC----------cccccCCCCCCCCC----cHHHHHHHHHHHHHHhhCHHHc
Confidence            777665 679999999987544          145654  875432    34566667 8999988776653

>2wsk_A Glycogen debranching enzyme; carbohydrate metabolism, hydrolase, glycosidase, ISO-amylase glycosyl hydrolase, glycogen metabolism; 2.25A {Escherichia coli k-12}

Probab=87.85  E-value=0.14  Score=49.15  Aligned_cols=69  Identities=19%  Similarity=0.322  Sum_probs=44.1

Q ss_pred             HHHHHHhhhhhhcCCCceeeeccCcCCCCCcccCCCCCCCChhhhh----hccccccCCCCCCcccccCCh-hHHhhHhh
Q psy9009          68 STFYINNIFPIATAPFPLVCIKGNEFGHPEWLDFPRAGNNSSYWHA----RRQWNLTDDELLKYKFLNSNE-TPATLDNT  142 (258)
Q Consensus        68 ~~~KmirLiT~a~gGeGYLNFMGNEFGHPEWiDFPReGNn~Sy~yA----RRQW~L~Dd~~LrYk~L~~FD-aM~~le~~  142 (258)
                      ...|+.-.++++.-|--. -|||.|||...      .||+.+|.--    .-+|+..+      +-|.+|= .|++|-++
T Consensus       494 ~~~r~~~a~ll~~~G~P~-iy~GdE~G~~~------~g~~~~y~~d~~~~~~~W~~~~------~~l~~~~~~Li~lRk~  560 (657)
T 2wsk_A          494 DSIHALLTTLLLSQGTPM-LLAGDEHGHSQ------HGNNNAYCQDNQLTWLDWSQAS------SGLTAFTAALIHLRKR  560 (657)
T ss_dssp             HHHHHHHHHHHHSBSEEE-EETTTTTTCCC------TTCSCCTTCCSTTTSCCGGGCC------HHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHcccCCE-EEechhhcccc------CCCCCccccCCccCccCccccc------HHHHHHHHHHHHHHhh
Confidence            345666666777766665 49999999976      4666655211    12677532      3345555 88999888


Q ss_pred             cccCCCC
Q psy9009         143 VVCLSPD  149 (258)
Q Consensus       143 ~~~L~~~  149 (258)
                      +..|...
T Consensus       561 ~pal~~g  567 (657)
T 2wsk_A          561 IPALVEN  567 (657)
T ss_dssp             CHHHHSC
T ss_pred             CcccccC
Confidence            7766654

>1ji1_A Alpha-amylase I; beta/alpha barrel, hydrolase; 1.60A {Thermoactinomyces vulgaris} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 1uh3_A* 2d0f_A* 1izj_A 1uh4_A* 1uh2_A* 2d0g_A* 2d0h_A* 1izk_A

Probab=83.73  E-value=0.76  Score=43.43  Aligned_cols=65  Identities=22%  Similarity=0.285  Sum_probs=42.3

Q ss_pred             HHHHHHhhhhhhcCCCceeeeccCcCCCCCcccCCCCCCCChhhhhhc--cccccCCCCCCcccccCCh-hHHhhHhhcc
Q psy9009          68 STFYINNIFPIATAPFPLVCIKGNEFGHPEWLDFPRAGNNSSYWHARR--QWNLTDDELLKYKFLNSNE-TPATLDNTVV  144 (258)
Q Consensus        68 ~~~KmirLiT~a~gGeGYLNFMGNEFGHPEWiDFPReGNn~Sy~yARR--QW~L~Dd~~LrYk~L~~FD-aM~~le~~~~  144 (258)
                      ...|+.-.++++.-|-- +-|||.|||....-|.          ++|+  +|+..++.    +-|.+|= .|++|-+++.
T Consensus       485 ~~~~~a~a~ll~~pG~P-~iy~GdE~G~~~~~d~----------~~r~~~~W~~~~~~----~~l~~~~~~Li~lRk~~~  549 (637)
T 1ji1_A          485 WKTYLALIFQMTYVGTP-TIYYGDEYGMQGGADP----------DNRRSFDWSQATPS----NSAVALTQKLITIRNQYP  549 (637)
T ss_dssp             HHHHHHHHHHTTSSSEE-EEETTGGGTCCCCSTT----------GGGCCCCTTSSSTT----SHHHHHHHHHHHHHHHCH
T ss_pred             HHHHHHHHHHHhCCCCc-eEEeeeccccCCCCCC----------cccCCCCCCcCCCh----HHHHHHHHHHHHHHhhCh
Confidence            44666666777776555 4599999999876331          3554  57765432    3455555 8888888766


Q ss_pred             cCC
Q psy9009         145 CLS  147 (258)
Q Consensus       145 ~L~  147 (258)
                      .|.
T Consensus       550 al~  552 (637)
T 1ji1_A          550 ALR  552 (637)
T ss_dssp             HHH
T ss_pred             Hhh
Confidence            554

>3vgf_A Malto-oligosyltrehalose trehalohydrolase; alpha/beta barrel, alpha-amylas hydrolase; HET: GLC FLC; 2.30A {Sulfolobus solfataricus} PDB: 3vge_A* 3vgd_A* 3vgb_A* 1eh9_A* 3vgh_A* 3vgg_A* 1eha_A

Probab=82.53  E-value=0.86  Score=42.65  Aligned_cols=99  Identities=11%  Similarity=0.184  Sum_probs=61.4

Q ss_pred             cccceeeeeecccccccccchhhHHHHhcChhhhcccccCCCCCcccchhHHHHHHhhhhhhcCCCceeeeccCcCCCCC
Q psy9009          18 VALTWVMFQSNRAGKMRTNGIFLFLLRLLDPEINRFKNTDLDFSQLFTEESTFYINNIFPIATAPFPLVCIKGNEFGHPE   97 (258)
Q Consensus        18 ~~Ek~iayaEsHdQalVg~Gd~T~af~LMd~eMY~~Msv~~~~s~~id~~~~~KmirLiT~a~gGeGYLNFMGNEFGHPE   97 (258)
                      .+.+.|.|.++|||  +|+.       ..+..+-+.          . .....|+.-.++++.-| -.+=|||-|+|-..
T Consensus       365 ~~~~~v~Fv~NHD~--~gnr-------~~g~r~~~~----------~-~~~~~~la~al~lt~pG-~P~Iy~G~E~g~~~  423 (558)
T 3vgf_A          365 DGCNFVVYIQNHDQ--VGNR-------GKGERIIKL----------V-DRESYKIAAALYLLSPY-IPMIFMGEEYGEEN  423 (558)
T ss_dssp             CGGGEEECSCCHHH--HHTS-------TTCCCGGGT----------S-CHHHHHHHHHHHHTSSS-EEEEETTGGGTCCS
T ss_pred             ChHHheeeeeccch--hccc-------ccccccccc----------C-CHHHHHHHHHHHHhCCC-cceeecChhhcCCC
Confidence            46778999999998  2221       011100000          0 12234555555555544 78889999999775


Q ss_pred             cc------------------------cCCCCCCCChhhhhhccccccCCCCCCcccccCCh-hHHhhHhhcc
Q psy9009          98 WL------------------------DFPRAGNNSSYWHARRQWNLTDDELLKYKFLNSNE-TPATLDNTVV  144 (258)
Q Consensus        98 Wi------------------------DFPReGNn~Sy~yARRQW~L~Dd~~LrYk~L~~FD-aM~~le~~~~  144 (258)
                      .+                        +.|.+.|...|..++++|...+       -+.+|= .|+++-+++.
T Consensus       424 p~~~f~d~~d~~l~~~v~~Gr~~ef~~~~dp~~~~~f~~~~~~w~~~~-------~l~~~~r~L~~lR~~~~  488 (558)
T 3vgf_A          424 PFYFFSDFSDSKLIQGVREGRKKENGQDTDPQDESTFNASKLSWKIDE-------EIFSFYKILIKMRKELS  488 (558)
T ss_dssp             CCCCCCCCCSHHHHHHHHHHHHHHHCCCSCTTSHHHHHHTSCCCCCCH-------HHHHHHHHHHHHHHHTT
T ss_pred             CCcccccCCCHHHHHHHhhhhhccccCCCCCCchhhhhccCCChhHHH-------HHHHHHHHHHHHHhhCc
Confidence            32                        3467777778999999998766       222222 7888887776

>2wan_A Pullulanase; hydrolase, glycoside hydrolase, polysaccharide, amylase, starch, carbohydrate; 1.65A {Bacillus acidopullulyticus}

Probab=81.12  E-value=0.51  Score=47.49  Aligned_cols=104  Identities=11%  Similarity=0.093  Sum_probs=60.7

Q ss_pred             ccceeeeeecccccccccchhhHHHHhcChhhhcccccCCCCCcccchhHHHHHHhhhhhhcCCCceeeeccCcCCCCCc
Q psy9009          19 ALTWVMFQSNRAGKMRTNGIFLFLLRLLDPEINRFKNTDLDFSQLFTEESTFYINNIFPIATAPFPLVCIKGNEFGHPEW   98 (258)
Q Consensus        19 ~Ek~iayaEsHdQalVg~Gd~T~af~LMd~eMY~~Msv~~~~s~~id~~~~~KmirLiT~a~gGeGYLNFMGNEFGHPEW   98 (258)
                      +...|.|.+|||+.-.  .++     |    .| .|..   .+. -.+.+..|+.-.++++.-|--.| |||.|||... 
T Consensus       725 p~~~vnfv~nHD~~rl--~d~-----l----~~-~~~~---~~~-~~~~~~~rla~a~llt~pG~P~i-y~GdE~g~~~-  786 (921)
T 2wan_A          725 PSETINYVTSHDNMTL--WDK-----I----LA-SNPS---DTE-ADRIKMDELAHAVVFTSQGVPFM-QGGEEMLRTK-  786 (921)
T ss_dssp             GGGEEECSCCSSSCCH--HHH-----H----HH-HCTT---SCH-HHHHHHHHHHHHHHHHSBSEEEE-ETTGGGTCCC-
T ss_pred             cceeEEeeeccCCccH--HHH-----h----hh-hCCC---CCH-HHHHHHHHHHHHHHHHCCCCcEE-EcchhhcccC-
Confidence            5677999999997432  221     1    01 0111   010 11234466666667776665555 9999999874 


Q ss_pred             ccCCCCCCCChhh----hhhccccccCCCCCCcccccCCh-hHHhhHhhcccCCCC
Q psy9009          99 LDFPRAGNNSSYW----HARRQWNLTDDELLKYKFLNSNE-TPATLDNTVVCLSPD  149 (258)
Q Consensus        99 iDFPReGNn~Sy~----yARRQW~L~Dd~~LrYk~L~~FD-aM~~le~~~~~L~~~  149 (258)
                           +||+.+|.    ..+-+|++.+.    .+-|.+|= .|++|-+++.-|...
T Consensus       787 -----~g~~n~y~~~d~~~~~~W~~~~~----~~~l~~~~~~Li~lRk~~paL~~g  833 (921)
T 2wan_A          787 -----GGNDNSYNAGDSVNQFDWSRKAQ----FKDVFDYFSSMIHLRNQHPAFRMT  833 (921)
T ss_dssp             -----TTCSCCTTCCHHHHSCCTHHHHH----THHHHHHHHHHHHHHHHCGGGGCC
T ss_pred             -----CCCCcccCCcccccccCCccccc----chHHHHHHHHHHHHHhhChhhhCC
Confidence                 46666653    12236876542    23455566 899998888777653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	258
d1bf2a3	475	Isoamylase, central domain {Pseudomonas amyloderam	96.73
d1m7xa3	396	1,4-alpha-glucan branching enzyme, central domain	95.34
d1wzla3	382	Maltogenic amylase, central domain {Thermoactinomy	94.55
d2fhfa5	563	Pullulanase PulA {Klebsiella pneumoniae [TaxId: 57	91.33
d1eh9a3	400	Glycosyltrehalose trehalohydrolase, central domain	90.55
d1j0ha3	382	Neopullulanase, central domain {Bacillus stearothe	86.16
d1m7xa2	106	1,4-alpha-glucan branching enzyme {Escherichia col	84.63

>d1bf2a3 c.1.8.1 (A:163-637) Isoamylase, central domain {Pseudomonas amyloderamosa [TaxId: 32043]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Isoamylase, central domain
species: Pseudomonas amyloderamosa [TaxId: 32043]

Probab=96.73  E-value=0.00033  Score=58.65  Aligned_cols=121  Identities=13%  Similarity=0.093  Sum_probs=66.2

Q ss_pred             cccccceeeeeecccccccccchhhHHHHhcChhhhcccccC--------------CCCCcccchhHHHHHHhhhhhhcC
Q psy9009          16 RSVALTWVMFQSNRAGKMRTNGIFLFLLRLLDPEINRFKNTD--------------LDFSQLFTEESTFYINNIFPIATA   81 (258)
Q Consensus        16 RR~~Ek~iayaEsHdQalVg~Gd~T~af~LMd~eMY~~Msv~--------------~~~s~~id~~~~~KmirLiT~a~g   81 (258)
                      .|..+..+.|.++||+-..  .|........+.+.+......              .+......+.+..|+.-.++++.-
T Consensus       334 ~~~~~~~~~~~~~hd~~~~--~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~llt~p  411 (475)
T d1bf2a3         334 GRSPWNSINFIDVHDGMTL--KDVYSCNGANNSQAWPYGPSDGGTSTNYSWDQGMSAGTGAAVDQRRAARTGMAFEMLSA  411 (475)
T ss_dssp             TCCGGGEEECSCCSSSCCH--HHHTTCSSCCCCCCTTSCCCCCCCSCCCCCCTTTTTTSCCHHHHHHHHHHHHHHHHHSS
T ss_pred             CcCHHHHHhHHHhcchhhH--HHHhhhhhhhhHhhccccccCCCcccccccccCccCCcchhHHHHHHHHHHHHHHHHhc
Confidence            4666788999999997432  222211111222222222211              111111112222333333334445


Q ss_pred             CCceeeeccCcCCCCCcccCCCCCCCChhhh----hhccccccCCCCCCcccccCCh-hHHhhHhhcccCCCC
Q psy9009          82 PFPLVCIKGNEFGHPEWLDFPRAGNNSSYWH----ARRQWNLTDDELLKYKFLNSNE-TPATLDNTVVCLSPD  149 (258)
Q Consensus        82 GeGYLNFMGNEFGHPEWiDFPReGNn~Sy~y----ARRQW~L~Dd~~LrYk~L~~FD-aM~~le~~~~~L~~~  149 (258)
                      |-..| |+|-|+|||.      .||+++|..    .|..|+..++    .+-|.+|- .|++|-+++.-|.+.
T Consensus       412 GiP~i-yyGdE~g~~~------~g~~~~y~~~~~~~~~~~~~~~~----~~~l~~~~~~Li~lR~~~paLr~~  473 (475)
T d1bf2a3         412 GTPLM-QGGDEYLRTL------QCNNNAYNLDSSANWLTYSWTTD----QSNFYTFAQRLIAFRKAHPALRPS  473 (475)
T ss_dssp             SEEEE-ETTGGGTCCC------TTCSCCTTCCSTTTSCCCCCCHH----HHHHHHHHHHHHHHHHHCGGGSCS
T ss_pred             cchhe-ecCHhhCccC------CCCcccccCCCccCccCCCccch----hHHHHHHHHHHHHHHhcChhhCCC
Confidence            65555 9999999975      467777753    2356665543    34566777 999999999888764

>d1m7xa3 c.1.8.1 (A:227-622) 1,4-alpha-glucan branching enzyme, central domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: 1,4-alpha-glucan branching enzyme, central domain
species: Escherichia coli [TaxId: 562]

Probab=95.34  E-value=0.005  Score=48.17  Aligned_cols=68  Identities=12%  Similarity=-0.008  Sum_probs=51.6

Q ss_pred             HHHHhhhhhhcCCCceeeeccCcCCCCCcccCCCCCCCChhhhhhccccccCCCCCCcccccCCh-hHHhhHhhcccCCC
Q psy9009          70 FYINNIFPIATAPFPLVCIKGNEFGHPEWLDFPRAGNNSSYWHARRQWNLTDDELLKYKFLNSNE-TPATLDNTVVCLSP  148 (258)
Q Consensus        70 ~KmirLiT~a~gGeGYLNFMGNEFGHPEWiDFPReGNn~Sy~yARRQW~L~Dd~~LrYk~L~~FD-aM~~le~~~~~L~~  148 (258)
                      .++.-.+++++.| .-+=|.|.|+|++-+.+          ..+|++|.+.|+..-..+-|.+|- .|++|-+++.-|.+
T Consensus       324 ~~la~a~llt~pG-~P~IYyGdEiG~~~~~~----------~~~~~~w~~~~~~~~~~~~l~~~~~~L~~lR~~~paL~~  392 (396)
T d1m7xa3         324 LRAYYGWMWAFPG-KKLLFMGNEFAQGREWN----------HDASLDWHLLEGGDNWHHGVQRLVRDLNLTYRHHKAMHE  392 (396)
T ss_dssp             HHHHHHHHHHSSS-EEEEETTTTTTCSSCCC----------TTSCCCGGGGCSSCCHHHHHHHHHHHHHHHHTTCGGGTS
T ss_pred             HHHHHHHHHHhCC-ccEeecccccCCCCCCC----------CCCCCChhhccCcchhhHHHHHHHHHHHHHHHcCHHhhc
Confidence            4455555555554 44559999999875433          257899999999888888899998 99999988887765

>d1wzla3 c.1.8.1 (A:121-502) Maltogenic amylase, central domain {Thermoactinomyces vulgaris, TVAII [TaxId: 2026]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Maltogenic amylase, central domain
species: Thermoactinomyces vulgaris, TVAII [TaxId: 2026]

Probab=94.55  E-value=0.0062  Score=49.20  Aligned_cols=64  Identities=20%  Similarity=0.309  Sum_probs=44.3

Q ss_pred             HHHHHHhhhhhhcCCCceeeeccCcCCCCCcccCCCCCCCChhhhhhc--cccccCCCCCCcccccCCh-hHHhhHhhcc
Q psy9009          68 STFYINNIFPIATAPFPLVCIKGNEFGHPEWLDFPRAGNNSSYWHARR--QWNLTDDELLKYKFLNSNE-TPATLDNTVV  144 (258)
Q Consensus        68 ~~~KmirLiT~a~gGeGYLNFMGNEFGHPEWiDFPReGNn~Sy~yARR--QW~L~Dd~~LrYk~L~~FD-aM~~le~~~~  144 (258)
                      +..|+...+++++-|--.| |+|.|+|.+.+.|        .  ++||  +|+..+.    .+-|.+|- .|++|-+++.
T Consensus       314 ~~~~~a~~~llt~pG~P~i-y~G~E~g~~g~~~--------~--~~r~~~~W~~~~~----~~~l~~~~~~L~~lR~~~p  378 (382)
T d1wzla3         314 AKFRLAVLFQMTYLGTPLI-YYGDEIGMAGATD--------P--DCLRPMIWEEKEQ----NRGLFEFYKELIRLRHRLA  378 (382)
T ss_dssp             HHHHHHHHHHHHSSSEEEE-ETTGGGTCCCCST--------T--GGGCCCCCCGGGS----CHHHHHHHHHHHHHHHHCH
T ss_pred             HHHHHHHHHHHHcCCCCEE-EcCcccCCCCCCC--------c--cccCCCCCCcccc----ChHHHHHHHHHHHHHhhCH
Confidence            3467777888888888877 9999999765433        3  4555  6765543    24566677 8888877765


Q ss_pred             cC
Q psy9009         145 CL  146 (258)
Q Consensus       145 ~L  146 (258)
                      -|
T Consensus       379 aL  380 (382)
T d1wzla3         379 SL  380 (382)
T ss_dssp             HH
T ss_pred             hh
Confidence            44

>d2fhfa5 c.1.8.1 (A:403-965) Pullulanase PulA {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Pullulanase PulA
species: Klebsiella pneumoniae [TaxId: 573]

Probab=91.33  E-value=0.055  Score=44.95  Aligned_cols=50  Identities=14%  Similarity=0.132  Sum_probs=33.4

Q ss_pred             hhHHHHHHhhhhhhcCCCceeeeccCcCCCCCcccCCCCCCCChhh----hhhccccccCC
Q psy9009          66 EESTFYINNIFPIATAPFPLVCIKGNEFGHPEWLDFPRAGNNSSYW----HARRQWNLTDD  122 (258)
Q Consensus        66 ~~~~~KmirLiT~a~gGeGYLNFMGNEFGHPEWiDFPReGNn~Sy~----yARRQW~L~Dd  122 (258)
                      +.+..||.-.+++++-|--+| |+|-|+|++.      .|++.+|.    ..+++|+..++
T Consensus       453 ~~~~~kla~~~llt~pG~P~I-YyGeEiG~t~------~~~~~~y~~~~~~~~~~w~~~~~  506 (563)
T d2fhfa5         453 RVRMQAVSLATVMLGQGIAFD-QQGSELLRSK------SFTRDSYDSGDWFNRVDYSLQDN  506 (563)
T ss_dssp             HHHHHHHHHHHHHTSSSEEEE-ETTGGGTCCC------TTCSCCTTSHHHHHCCCTTCSCC
T ss_pred             HHHHHHHHHHHHHHhcCccEE-EcCcccCCcC------CCCcccccCcccccccccccCcc
Confidence            344567887888888888888 9999999865      33344432    23456665544

>d1eh9a3 c.1.8.1 (A:91-490) Glycosyltrehalose trehalohydrolase, central domain {Archaeon Sulfolobus solfataricus, km1 [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Glycosyltrehalose trehalohydrolase, central domain
species: Archaeon Sulfolobus solfataricus, km1 [TaxId: 2287]

Probab=90.55  E-value=0.099  Score=42.02  Aligned_cols=51  Identities=18%  Similarity=0.306  Sum_probs=36.6

Q ss_pred             HHHHHHhhhhhhcCCCceeeeccCcCC----CCCcccCCCCCCCChhhhhhccccc
Q psy9009          68 STFYINNIFPIATAPFPLVCIKGNEFG----HPEWLDFPRAGNNSSYWHARRQWNL  119 (258)
Q Consensus        68 ~~~KmirLiT~a~gGeGYLNFMGNEFG----HPEWiDFPReGNn~Sy~yARRQW~L  119 (258)
                      ..+|+...+.+++.|--.+ |+|-|+|    .+.+-|++.......++-.|+++..
T Consensus       305 ~~~~~a~a~~l~~pGiP~i-y~G~E~G~~~~~~~~~~~~d~~~~~~~~~~~~~~~~  359 (400)
T d1eh9a3         305 ESYKIAAALYLLSPYIPMI-FMGEEYGEENPFYFFSDFSDSKLIQGVREGRKKENG  359 (400)
T ss_dssp             HHHHHHHHHHHSSSSCCEE-ESSGGGTCCCCCCCCCCCCSTTHHHHHHHHHHHHTC
T ss_pred             hHHHHHHHHHHhCCCCCEE-ECChhhCCCCCCCchhhcccHHHhhhhHhhhcCccC
Confidence            3467777778888777777 9999999    5666677777666666666665543

>d1j0ha3 c.1.8.1 (A:124-505) Neopullulanase, central domain {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Neopullulanase, central domain
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=86.16  E-value=0.14  Score=41.17  Aligned_cols=63  Identities=17%  Similarity=0.258  Sum_probs=41.4

Q ss_pred             HHHHHHhhhhhhcCCCceeeeccCcCCCCCcccCCCCCCCChhhhhhc--cccccCCCCCCcccccCCh-hHHhhHhhcc
Q psy9009          68 STFYINNIFPIATAPFPLVCIKGNEFGHPEWLDFPRAGNNSSYWHARR--QWNLTDDELLKYKFLNSNE-TPATLDNTVV  144 (258)
Q Consensus        68 ~~~KmirLiT~a~gGeGYLNFMGNEFGHPEWiDFPReGNn~Sy~yARR--QW~L~Dd~~LrYk~L~~FD-aM~~le~~~~  144 (258)
                      +..|+...+++++-|--.| |+|-|+|...        ++  ..++|+  +|+..+..    +-|.+|= .|++|-+++.
T Consensus       314 ~~~~~a~~lllt~pG~P~i-y~G~E~G~~~--------~~--~~~~r~~~~W~~~~~~----~~l~~~~k~L~~lR~~~p  378 (382)
T d1j0ha3         314 RKVKLLFLFQLTFTGSPCI-YYGDEIGMTG--------GN--DPECRKCMVWDPMQQN----KELHQHVKQLIALRKQYR  378 (382)
T ss_dssp             HHHHHHHHHHHHSSSCCEE-ETTGGGTCCC--------CS--TTGGGCCCCCCTTTSC----HHHHHHHHHHHHHHHHCH
T ss_pred             HHHHHHHHHHHHcCCCCEE-EcChhhCcCC--------CC--CcccccCCCCCccccC----hHHHHHHHHHHHHHhcCH
Confidence            3456666777777777666 9999999753        22  345666  67766544    3455566 7888877664


Q ss_pred             c
Q psy9009         145 C  145 (258)
Q Consensus       145 ~  145 (258)
                      -
T Consensus       379 a  379 (382)
T d1j0ha3         379 S  379 (382)
T ss_dssp             H
T ss_pred             H
Confidence            3

>d1m7xa2 b.71.1.1 (A:623-728) 1,4-alpha-glucan branching enzyme {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Glycosyl hydrolase domain
superfamily: Glycosyl hydrolase domain
family: alpha-Amylases, C-terminal beta-sheet domain
domain: 1,4-alpha-glucan branching enzyme
species: Escherichia coli [TaxId: 562]

Probab=84.63  E-value=0.22  Score=36.31  Aligned_cols=24  Identities=29%  Similarity=0.243  Sum_probs=20.6

Q ss_pred             ccCCccccccccccCCceeeecccceeEEee
Q psy9009         157 FPFGCWVNMRTPESNPLKYLLSKNECEILSM  187 (258)
Q Consensus       157 hp~kSy~dYrvgv~~pGkY~l~~~~c~ils~  187 (258)
                      +| .+|.+|+|||..+|+|+      |||.-
T Consensus        36 sp-~~~~~Y~igvp~~G~~~------~ilNT   59 (106)
T d1m7xa2          36 TP-VPRHDYRFGINQPGKWR------EILNT   59 (106)
T ss_dssp             SS-CCEEEECCBCSSCSEEE------EEEET
T ss_pred             CC-CccCcEEcCCCCCCeEE------EEEcC
Confidence            66 58999999999999999      56654