Psyllid ID: psy9039
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 251 | 2.2.26 [Sep-21-2011] | |||||||
| Q1NZ26 | 277 | Uncharacterized protein F | yes | N/A | 0.880 | 0.797 | 0.451 | 9e-50 | |
| P72966 | 287 | Photosystem I biogenesis | N/A | N/A | 0.928 | 0.811 | 0.297 | 5e-20 | |
| O29828 | 246 | Uncharacterized protein A | yes | N/A | 0.824 | 0.841 | 0.305 | 1e-19 | |
| Q5JHL2 | 261 | Uncharacterized protein T | yes | N/A | 0.749 | 0.720 | 0.314 | 1e-17 | |
| Q58515 | 261 | Uncharacterized protein M | yes | N/A | 0.745 | 0.716 | 0.303 | 1e-17 | |
| Q9UZT4 | 259 | Uncharacterized protein P | yes | N/A | 0.752 | 0.729 | 0.277 | 2e-17 | |
| O58974 | 259 | Uncharacterized protein P | yes | N/A | 0.749 | 0.725 | 0.274 | 7e-17 | |
| Q8U2H5 | 262 | Uncharacterized protein P | yes | N/A | 0.745 | 0.713 | 0.292 | 2e-16 |
| >sp|Q1NZ26|YSMU_CAEEL Uncharacterized protein F13E9.13, mitochondrial OS=Caenorhabditis elegans GN=F13E9.13 PE=3 SV=1 | Back alignment and function desciption |
|---|
Score = 196 bits (499), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 102/226 (45%), Positives = 143/226 (63%), Gaps = 5/226 (2%)
Query: 25 PEITANMTRLCAEIRKVLPPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAE 84
P T M+ + ++RK GV GVIVENMHDVPYV + + PEI ++M +
Sbjct: 31 PSNTLPMSAILKKVRKEADVYFKNGVD-GVIVENMHDVPYV-KPPASPEIVSSMALASDQ 88
Query: 85 I---RKVLPPSVPVGVQILSGCNKAALATAQAAGLDFIRAESFVFGHMADEGLMNAQAGP 141
+ R P+ G+QIL+ N+ ALA A G+DFIRAE FV+ H+ADEG ++ AG
Sbjct: 89 LVKSRDAHHPAALTGIQILAAANREALAVAYTTGMDFIRAEGFVYSHVADEGWIDGCAGG 148
Query: 142 LLRYRKQIGADNVLVFTDIKKKHSSHAITADVDITETAKAASFFLSDGLIITGNATGDPA 201
LLRYR + A+N+ +FTDIKKKHS+H++T+DV I E AK A F +DG+I+TG+ATG A
Sbjct: 149 LLRYRSSLKAENIAIFTDIKKKHSAHSVTSDVSIHEMAKDAKFNCADGVIVTGSATGSAA 208
Query: 202 DVSQLMSVKNAVDLPILIGSGVTSDNVEHYMTADALIIGSHFKQGG 247
+ +++ V + P+LIGSG+ N ++ A I+GS FK GG
Sbjct: 209 SLEEMIQVMKVQEFPVLIGSGINGKNAREFVKAHGFIVGSDFKIGG 254
|
Caenorhabditis elegans (taxid: 6239) |
| >sp|P72966|BTPA_SYNY3 Photosystem I biogenesis protein BtpA OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=btpA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 98.2 bits (243), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 74/249 (29%), Positives = 122/249 (48%), Gaps = 16/249 (6%)
Query: 3 QKHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQHGVIVENMHDV 62
Q H ++ +H +P A G +TA + R E ++ G G+IVEN D
Sbjct: 8 QTHNPVIGVVHLLPLPTSARWGGNLTAVIERAEQE-----ATALAAGGVDGIIVENFFDA 62
Query: 63 PYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQAAGLDFIRAE 122
P+ + P + + MT + ++ ++ PVG+ +L +ALA A G FIR
Sbjct: 63 PFP-KQRVDPAVVSAMTLIVDRLQNLV--VAPVGINVLRNDAHSALAIASCVGAKFIRVN 119
Query: 123 SFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSSHAITADVD--ITETAK 180
D+GL+ A LLRYR+++ +D V + D+ KH+ T ++ +T+T +
Sbjct: 120 VLTGVMATDQGLIEGNAHELLRYRRELSSD-VAILADVLVKHARPLGTPNLTTAVTDTIE 178
Query: 181 AASFFLSDGLIITGNATGDPADVSQLMSVKNAVD-LPILIGSGVTSDNVEHYM-TADALI 238
L+DG+I++G ATG P ++ L NA P+ IGSG DN+ + A+ +I
Sbjct: 179 RG---LADGIILSGWATGSPPNLEDLELATNAAKGTPVFIGSGADEDNIGQLIQAANGVI 235
Query: 239 IGSHFKQGG 247
+ S K+ G
Sbjct: 236 VASSLKRHG 244
|
Regulates a post-transcriptional process during the life cycle of the PSI protein complex such as (1) translation of the psaAB mRNA, (2) assembly of the PsaA/PsaB polypeptides and their associated cofactors into a functional complex, or (3) degradation of the protein complex. Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708) |
| >sp|O29828|Y419_ARCFU Uncharacterized protein AF_0419 OS=Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) GN=AF_0419 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 96.7 bits (239), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 67/219 (30%), Positives = 115/219 (52%), Gaps = 12/219 (5%)
Query: 32 TRLCAEIRKVLPPSVPV--GVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVL 89
T L A I K + + + G +I+EN D P++ E G E A MT + E+++
Sbjct: 21 TDLSAVIDKAVKDARAIEEGGADALILENYGDKPFL--KEVGKETVAAMTVIACEVKR-- 76
Query: 90 PPSVPVGVQILSGCNKAALATAQAAGLDFIRAESFVFGHMADEGLMNAQAGPLLRYRKQI 149
S+ +G+ +L AALA A+A DF+R F ++ EG++ +AG ++RY+K +
Sbjct: 77 DVSIGLGINVLRNDAVAALAIAKAVNADFVRVNQLFFTSVSPEGILEGKAGEVMRYKKLV 136
Query: 150 GADNVLVFTDIKKKHSSHAITADVDITETAKAASFFLSDGLIITGNATGDPADVSQLMSV 209
++F DI KH+ H + + + A L+D +I+TG TG + +L
Sbjct: 137 DC-RAMIFADIAVKHAVHFAS----LEDYCLNAERSLADAVILTGKTTGGEVSLEELKYA 191
Query: 210 KNAVDLPILIGSGVTSDNVEHYMT-ADALIIGSHFKQGG 247
K + +P+L GSGV ++N + D +I+G++ K+GG
Sbjct: 192 KKTLKMPVLAGSGVNAENAARILKWCDGVIVGTYIKRGG 230
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Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) (taxid: 224325) |
| >sp|Q5JHL2|Y2179_PYRKO Uncharacterized protein TK2179 OS=Pyrococcus kodakaraensis (strain ATCC BAA-918 / JCM 12380 / KOD1) GN=TK2179 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 90.5 bits (223), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 62/197 (31%), Positives = 102/197 (51%), Gaps = 9/197 (4%)
Query: 54 VIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQA 113
V+VEN DVP+ A+ A++ + IR + S+P+GV +L AA + A A
Sbjct: 49 VMVENFGDVPFPKYADK--TTVASLAVVAKAIRDEV--SLPLGVNVLRNDGIAAYSIAYA 104
Query: 114 AGLDFIRAESFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSSHAITADV 173
DFIR D+G++ A L RK++ ++ + VF D+ KH+ H +
Sbjct: 105 VKADFIRVNVLSGVAYTDQGIIEGIAHELAMLRKRLPSE-IKVFADVHVKHAVHFGDFED 163
Query: 174 DITETAKAASFFLSDGLIITGNATGDPADVSQLMSVKNAVDLPILIGSGVTSDNV-EHYM 232
+T + L+D ++++G ATG P DV +L K +P+++GSG + DN+ E +
Sbjct: 164 AFLDTVERG---LADAVVVSGKATGRPVDVDKLALAKEISPVPVIVGSGTSYDNLPELWK 220
Query: 233 TADALIIGSHFKQGGRT 249
AD I+G+ K+ GR
Sbjct: 221 YADGFIVGTWIKRDGRV 237
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Pyrococcus kodakaraensis (strain ATCC BAA-918 / JCM 12380 / KOD1) (taxid: 69014) |
| >sp|Q58515|Y1115_METJA Uncharacterized protein MJ1115 OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=MJ1115 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 90.1 bits (222), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 60/198 (30%), Positives = 104/198 (52%), Gaps = 11/198 (5%)
Query: 53 GVIVENMHDVPYVLEAESGPEIT-ANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATA 111
V++EN D P+ EA+ +IT A+M + I++ + S+P+G+ IL A + A
Sbjct: 50 AVMIENFGDAPFKKEAD---KITIASMAVIAKAIKEEV--SLPLGINILRNDAIGAYSIA 104
Query: 112 QAAGLDFIRAESFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSSHAITA 171
DFIR D+G++ +A L + +K + + + VF D+ KH+ H I
Sbjct: 105 YVVKADFIRVNVLSGVAFTDQGIIEGKAYELAKLKKLLPS-KIKVFADVHVKHAYHFIDF 163
Query: 172 DVDITETAKAASFFLSDGLIITGNATGDPADVSQLMSVKNAVDLPILIGSGVTSDNVE-H 230
+ + +T + L+D +II+G TG D+ +L K VD+P+++GSG +N+
Sbjct: 164 ESSLLDTVERG---LADAVIISGKRTGKEVDIEKLKLAKELVDVPVIVGSGTNYNNLRIL 220
Query: 231 YMTADALIIGSHFKQGGR 248
+ AD IIG+ K+ G+
Sbjct: 221 WSYADGFIIGTWIKKDGK 238
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Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) (taxid: 243232) |
| >sp|Q9UZT4|Y1062_PYRAB Uncharacterized protein PYRAB10620 OS=Pyrococcus abyssi (strain GE5 / Orsay) GN=PYRAB10620 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 89.4 bits (220), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 55/198 (27%), Positives = 99/198 (50%), Gaps = 9/198 (4%)
Query: 54 VIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQA 113
+I+EN D PY E A+ + E+ + + S+P+G+ +L A+ + A +
Sbjct: 49 IILENYGDFPY--SKTISKETLASFAVIAKEVGREI--SIPIGINVLRNDCVASYSIAYS 104
Query: 114 AGLDFIRAESFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSSHAITADV 173
DFIR D+G++ A L R ++ + V D+ KH++H + +V
Sbjct: 105 VRADFIRVNVLTGVAFTDQGIIEGCARELAELRARL-PSRIKVLADVHVKHATHFSSFEV 163
Query: 174 DITETAKAASFFLSDGLIITGNATGDPADVSQLMSVKNAVDLPILIGSGVTSDNVE-HYM 232
+ +T + +D +IITG+ TG D+ +LM K +P+++GSG+ N+ +
Sbjct: 164 ALLDTVERGG---ADAVIITGSRTGSEVDIQELMLAKKISPVPVIVGSGLNPRNIRLFWR 220
Query: 233 TADALIIGSHFKQGGRTF 250
AD I+G+ K+GG+T
Sbjct: 221 YADGFIVGTWVKEGGKTL 238
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Pyrococcus abyssi (strain GE5 / Orsay) (taxid: 272844) |
| >sp|O58974|Y1209_PYRHO Uncharacterized protein PH1209 OS=Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) GN=PH1209 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 87.8 bits (216), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 54/197 (27%), Positives = 101/197 (51%), Gaps = 9/197 (4%)
Query: 54 VIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQA 113
+I+EN D PY G E + + + E+++ + ++P+G+ +L AA + A +
Sbjct: 49 IILENYGDFPY--SKTVGKETVSAFSVVANEVKREI--ALPLGINVLRNDCIAAYSIAYS 104
Query: 114 AGLDFIRAESFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSSHAITADV 173
DFIR D+G++ A L R ++ + V D+ KH++H +
Sbjct: 105 IKADFIRVNVLTGVAFTDQGIVEGCARELAELRTRL-PSRIDVLADVHVKHATHFSNFEN 163
Query: 174 DITETAKAASFFLSDGLIITGNATGDPADVSQLMSVKNAVDLPILIGSGVTSDNVE-HYM 232
+ +T + +D +I+TG+ TG D+ +L++ K +P+L+GSGV N++ +
Sbjct: 164 ALLDTIERGG---ADAVIVTGSRTGSEVDIQELITAKRISPVPVLVGSGVNPRNIKLFWR 220
Query: 233 TADALIIGSHFKQGGRT 249
+D I+G+ K+GGRT
Sbjct: 221 YSDGFIVGTWVKEGGRT 237
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Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) (taxid: 70601) |
| >sp|Q8U2H5|Y860_PYRFU Uncharacterized protein PF0860 OS=Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN=PF0860 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 86.7 bits (213), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 58/198 (29%), Positives = 98/198 (49%), Gaps = 11/198 (5%)
Query: 53 GVIVENMHDVPYVLEAESGP-EITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATA 111
G+IVEN D P+ +++ P E+ T + ++K + S+P+G+ L A + A
Sbjct: 51 GIIVENFGDSPF---SKTLPREVIPAFTVVAKAVKKEV--SLPLGINALRNDCIVAYSIA 105
Query: 112 QAAGLDFIRAESFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSSHAITA 171
A G FIR D+G++ A L ++ IG D +L D+ KH+ H
Sbjct: 106 HAVGGSFIRVNVLTGVAFTDQGIIEGCARELWNVKRIIGGD-ILTLADVHVKHAVHFTNF 164
Query: 172 DVDITETAKAASFFLSDGLIITGNATGDPADVSQLMSVKNAVDLPILIGSGVTSDNVEH- 230
+ + +T + L+DG+I+TG TG+ + L+ K +P+L+GSGV N
Sbjct: 165 EDAVKDTVERG---LADGIIVTGRRTGESISLEDLILAKRVSSIPVLVGSGVNPRNFRTL 221
Query: 231 YMTADALIIGSHFKQGGR 248
+ AD I+G+ K+ G+
Sbjct: 222 FKYADGFIVGTWVKENGK 239
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Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) (taxid: 186497) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 251 | ||||||
| 340726689 | 274 | PREDICTED: uncharacterized protein F13E9 | 0.764 | 0.700 | 0.619 | 1e-69 | |
| 380018949 | 301 | PREDICTED: uncharacterized protein F13E9 | 0.776 | 0.647 | 0.605 | 3e-69 | |
| 328788720 | 275 | PREDICTED: uncharacterized protein F13E9 | 0.776 | 0.709 | 0.6 | 5e-68 | |
| 350418434 | 271 | PREDICTED: uncharacterized protein F13E9 | 0.764 | 0.708 | 0.609 | 8e-68 | |
| 332374108 | 270 | unknown [Dendroctonus ponderosae] | 0.776 | 0.722 | 0.6 | 2e-67 | |
| 307182162 | 230 | Uncharacterized protein F13E9.13, mitoch | 0.780 | 0.852 | 0.613 | 3e-67 | |
| 130502099 | 268 | uncharacterized protein LOC555865 [Danio | 0.764 | 0.716 | 0.651 | 3e-67 | |
| 383854428 | 327 | PREDICTED: uncharacterized protein F13E9 | 0.772 | 0.593 | 0.605 | 4e-67 | |
| 432853093 | 268 | PREDICTED: uncharacterized protein F13E9 | 0.764 | 0.716 | 0.646 | 2e-66 | |
| 348500192 | 268 | PREDICTED: uncharacterized protein F13E9 | 0.764 | 0.716 | 0.646 | 2e-66 |
| >gi|340726689|ref|XP_003401686.1| PREDICTED: uncharacterized protein F13E9.13, mitochondrial-like [Bombus terrestris] | Back alignment and taxonomy information |
|---|
Score = 268 bits (685), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 119/192 (61%), Positives = 156/192 (81%)
Query: 53 GVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQ 112
G++VENMHD+PYV + PE TA MTR+C E+RKVLP ++P G+QIL+GCNK A+A A+
Sbjct: 55 GILVENMHDIPYVRPKDLTPETTAIMTRICTEVRKVLPENIPCGIQILAGCNKEAIAVAK 114
Query: 113 AAGLDFIRAESFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSSHAITAD 172
AA L FIRAE FVF H+ADEG +A AG LLRYRKQI AD++L+ DIKKKHSSHAIT+D
Sbjct: 115 AANLQFIRAEGFVFSHIADEGFTDACAGSLLRYRKQIDADDILILADIKKKHSSHAITSD 174
Query: 173 VDITETAKAASFFLSDGLIITGNATGDPADVSQLMSVKNAVDLPILIGSGVTSDNVEHYM 232
V ++ETAKAA FFL+DG+I+TG TGDP +VS+ +K ++P+LIGSGVT +N++ Y+
Sbjct: 175 VSLSETAKAAKFFLADGIILTGITTGDPVNVSEFTEIKQNSEIPVLIGSGVTKNNIKDYL 234
Query: 233 TADALIIGSHFK 244
++DA+I+GSHFK
Sbjct: 235 SSDAVIVGSHFK 246
|
Source: Bombus terrestris Species: Bombus terrestris Genus: Bombus Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|380018949|ref|XP_003693381.1| PREDICTED: uncharacterized protein F13E9.13, mitochondrial-like [Apis florea] | Back alignment and taxonomy information |
|---|
Score = 267 bits (683), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 118/195 (60%), Positives = 156/195 (80%)
Query: 53 GVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQ 112
G++VENMHD PYV PE TA MTR+C EI+++LP ++P G+QIL+GCNK A+A A+
Sbjct: 55 GILVENMHDNPYVRSEHLTPETTAMMTRICTEIKQILPENIPCGIQILAGCNKEAIAVAK 114
Query: 113 AAGLDFIRAESFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSSHAITAD 172
A FIRAE FVF H+ADEG +A AG LLRYRKQI AD++L+F DIKKKHSSH IT+D
Sbjct: 115 ATNFQFIRAEGFVFSHIADEGFTDACAGSLLRYRKQIDADDILIFADIKKKHSSHTITSD 174
Query: 173 VDITETAKAASFFLSDGLIITGNATGDPADVSQLMSVKNAVDLPILIGSGVTSDNVEHYM 232
V + ETAKAA FFL+DG+I+TGNATG PA+V++L +K VD+P+LIGSG+T N+++Y+
Sbjct: 175 VSLLETAKAAKFFLADGIILTGNATGYPANVTELTEIKQNVDIPVLIGSGITKQNIKNYL 234
Query: 233 TADALIIGSHFKQGG 247
+++A+I+GSHFK G
Sbjct: 235 SSNAVIVGSHFKING 249
|
Source: Apis florea Species: Apis florea Genus: Apis Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|328788720|ref|XP_396502.3| PREDICTED: uncharacterized protein F13E9.13, mitochondrial-like [Apis mellifera] | Back alignment and taxonomy information |
|---|
Score = 263 bits (672), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 117/195 (60%), Positives = 157/195 (80%)
Query: 53 GVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQ 112
G++VENMHD PY+ PE TA MTR+C EI++VLP ++P G+QIL+GCNK A+A A+
Sbjct: 55 GILVENMHDNPYMRPEHLTPETTAMMTRICTEIKQVLPKNIPCGIQILAGCNKEAIAVAK 114
Query: 113 AAGLDFIRAESFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSSHAITAD 172
A FIRAE FVF H+ADEG +A AG LLRYRKQI AD++L+F DIKKKHSSH IT+D
Sbjct: 115 ATNFQFIRAEGFVFSHIADEGFTDACAGSLLRYRKQIDADDILIFADIKKKHSSHTITSD 174
Query: 173 VDITETAKAASFFLSDGLIITGNATGDPADVSQLMSVKNAVDLPILIGSGVTSDNVEHYM 232
V + ETAKAA FFL+DG+I+TG+ATG PA+ ++L+ +K VD+PILIGSG+T+ N+++Y+
Sbjct: 175 VSVLETAKAAKFFLADGVILTGDATGYPANETELIEIKQNVDIPILIGSGITTKNIKNYL 234
Query: 233 TADALIIGSHFKQGG 247
+++A+I+GSHFK G
Sbjct: 235 SSNAVIVGSHFKING 249
|
Source: Apis mellifera Species: Apis mellifera Genus: Apis Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|350418434|ref|XP_003491855.1| PREDICTED: uncharacterized protein F13E9.13, mitochondrial-like [Bombus impatiens] | Back alignment and taxonomy information |
|---|
Score = 262 bits (670), Expect = 8e-68, Method: Compositional matrix adjust.
Identities = 117/192 (60%), Positives = 153/192 (79%)
Query: 53 GVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQ 112
G++VENMHD+PYV + PE TA MTR+C E+RKVLP +P G+QIL+GCNK A+A A+
Sbjct: 55 GILVENMHDIPYVKPKDLTPETTAIMTRICTEVRKVLPQYIPCGIQILAGCNKEAIAVAK 114
Query: 113 AAGLDFIRAESFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSSHAITAD 172
AA L FIRAE FVF H+ADEG +A AG LLRYRKQI AD++L+ DIKKKHSSHAIT+D
Sbjct: 115 AANLQFIRAEGFVFSHIADEGFTDACAGSLLRYRKQIDADDILILADIKKKHSSHAITSD 174
Query: 173 VDITETAKAASFFLSDGLIITGNATGDPADVSQLMSVKNAVDLPILIGSGVTSDNVEHYM 232
V ++ET KAA FFL+DG+I+TG TGDP +VS+ +K +P+LIGSGV +N+++Y+
Sbjct: 175 VSLSETVKAAKFFLADGIILTGITTGDPVNVSEFTEIKQNSKIPVLIGSGVKKNNIKNYL 234
Query: 233 TADALIIGSHFK 244
++DA+I+GSHFK
Sbjct: 235 SSDAVIVGSHFK 246
|
Source: Bombus impatiens Species: Bombus impatiens Genus: Bombus Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|332374108|gb|AEE62195.1| unknown [Dendroctonus ponderosae] | Back alignment and taxonomy information |
|---|
Score = 261 bits (666), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 117/195 (60%), Positives = 154/195 (78%)
Query: 53 GVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQ 112
V+VENMHDVPY+ + GPE+TA M+R+C E+RK++P +VP G+Q+LS N+ ALA A+
Sbjct: 54 AVLVENMHDVPYIQSRDFGPEVTATMSRICTEVRKIVPKTVPCGLQVLSCGNREALAIAK 113
Query: 113 AAGLDFIRAESFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSSHAITAD 172
A +FIRAE FVF H+ DEG +A AG LLRYR+ I A++VL+F DIKKKHSSHAIT+D
Sbjct: 114 ACNFNFIRAEGFVFSHIGDEGFTDANAGTLLRYRRAINAEDVLIFADIKKKHSSHAITSD 173
Query: 173 VDITETAKAASFFLSDGLIITGNATGDPADVSQLMSVKNAVDLPILIGSGVTSDNVEHYM 232
+ + ETAKAA +FL+DG+++TG ATG PA +++L +K+A LPIL+GSGVT+DNV Y+
Sbjct: 174 ITLEETAKAAEYFLADGVVLTGTATGVPAKITELQELKHATKLPILVGSGVTADNVTSYL 233
Query: 233 TADALIIGSHFKQGG 247
ADALIIGSHFK G
Sbjct: 234 QADALIIGSHFKTNG 248
|
Source: Dendroctonus ponderosae Species: Dendroctonus ponderosae Genus: Dendroctonus Family: Curculionidae Order: Coleoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|307182162|gb|EFN69505.1| Uncharacterized protein F13E9.13, mitochondrial [Camponotus floridanus] | Back alignment and taxonomy information |
|---|
Score = 261 bits (666), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 122/199 (61%), Positives = 156/199 (78%), Gaps = 3/199 (1%)
Query: 53 GVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQ 112
G+++ENMHD+PYV + + PEIT MTR+C+E+RKV+P ++ GVQIL+GCN+ A+A A+
Sbjct: 9 GILIENMHDIPYVRQRDLSPEITTMMTRICSEVRKVVPQNIACGVQILAGCNREAIAVAK 68
Query: 113 AAGLDFIRAESFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSSHAITAD 172
A GL FIRAE FVF H+ADEG ++A AG LLRYRKQI ADN+L+F D+KKKHSSHAIT+D
Sbjct: 69 ATGLQFIRAEGFVFSHIADEGFIDANAGTLLRYRKQIDADNILIFADVKKKHSSHAITSD 128
Query: 173 VDITETAKAASFFLSDGLIITGNATGDPADVSQLMSVKNAV--DLPILIGSGVTSDNVEH 230
V + ET KAA FFL+DG+I+TGNATG+ V L V+ V LP+LIGSGVT DNV++
Sbjct: 129 VSLLETVKAAEFFLADGVILTGNATGEEVSVRDLSEVRKHVVARLPLLIGSGVTLDNVDN 188
Query: 231 YMT-ADALIIGSHFKQGGR 248
Y ADALI+GS+ K GR
Sbjct: 189 YANAADALIVGSYLKTAGR 207
|
Source: Camponotus floridanus Species: Camponotus floridanus Genus: Camponotus Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|130502099|ref|NP_001076270.1| uncharacterized protein LOC555865 [Danio rerio] gi|126631728|gb|AAI33938.1| Zgc:162297 protein [Danio rerio] | Back alignment and taxonomy information |
|---|
Score = 260 bits (665), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 127/195 (65%), Positives = 156/195 (80%), Gaps = 3/195 (1%)
Query: 53 GVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQ 112
G+I+ENMHD+PY L+ GPE+ A MT +C +R L PS P+GVQILS N +ALA A
Sbjct: 54 GLIIENMHDIPYTLDV--GPEVCACMTAVCTAVRG-LYPSWPLGVQILSAANHSALAVAL 110
Query: 113 AAGLDFIRAESFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSSHAITAD 172
A+GLDFIRAE FVF H+ADEGL+NA AG LLRYRK IGA++V +FTDIKKKHS+HA+TAD
Sbjct: 111 ASGLDFIRAEGFVFSHVADEGLLNACAGELLRYRKCIGAEHVQIFTDIKKKHSAHALTAD 170
Query: 173 VDITETAKAASFFLSDGLIITGNATGDPADVSQLMSVKNAVDLPILIGSGVTSDNVEHYM 232
V I ETA+AA FFLSDG+++TG+ATG AD +L V +V +P+LIGSGVT DNVEHY+
Sbjct: 171 VSIAETAQAAEFFLSDGVVVTGSATGAKADPQELREVSQSVRIPVLIGSGVTDDNVEHYL 230
Query: 233 TADALIIGSHFKQGG 247
A A+IIGSHFK+GG
Sbjct: 231 QASAMIIGSHFKKGG 245
|
Source: Danio rerio Species: Danio rerio Genus: Danio Family: Cyprinidae Order: Cypriniformes Class: Actinopterygii Phylum: Chordata Superkingdom: Eukaryota |
| >gi|383854428|ref|XP_003702723.1| PREDICTED: uncharacterized protein F13E9.13, mitochondrial-like [Megachile rotundata] | Back alignment and taxonomy information |
|---|
Score = 260 bits (664), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 118/195 (60%), Positives = 153/195 (78%), Gaps = 1/195 (0%)
Query: 53 GVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQ 112
G++VENMHD+PYV + PE TA MTR+C E+++ LP +P G+QIL+GCNK ALA A+
Sbjct: 55 GILVENMHDIPYVRPKDISPETTAFMTRICTEVKRTLP-EIPCGIQILAGCNKEALAVAK 113
Query: 113 AAGLDFIRAESFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSSHAITAD 172
AA L F+RAE FVF H+ADEG ++ AG LLRYRKQI A+NVL+F D+KKKHSSH IT D
Sbjct: 114 AADLQFVRAEGFVFSHIADEGFTDSCAGSLLRYRKQIDAENVLIFVDVKKKHSSHTITTD 173
Query: 173 VDITETAKAASFFLSDGLIITGNATGDPADVSQLMSVKNAVDLPILIGSGVTSDNVEHYM 232
V ++ET KAA FFL+DG+I+TG ATGDP + ++L VK PIL+GSGVT DN+E+Y+
Sbjct: 174 VSLSETVKAAEFFLADGIILTGTATGDPTNAAELAEVKQIAKGPILVGSGVTIDNIENYL 233
Query: 233 TADALIIGSHFKQGG 247
++DA+I+GSHFK G
Sbjct: 234 SSDAVIVGSHFKVDG 248
|
Source: Megachile rotundata Species: Megachile rotundata Genus: Megachile Family: Megachilidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|432853093|ref|XP_004067536.1| PREDICTED: uncharacterized protein F13E9.13, mitochondrial-like [Oryzias latipes] | Back alignment and taxonomy information |
|---|
Score = 258 bits (659), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 126/195 (64%), Positives = 152/195 (77%), Gaps = 3/195 (1%)
Query: 53 GVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQ 112
G+IVENMHDVPY GPE+ A MT +C +R+ P S+P+GVQILS N+ ALA A
Sbjct: 54 GLIVENMHDVPYTFHV--GPEVCACMTAVCVAVRRACP-SLPLGVQILSSANRQALAVAL 110
Query: 113 AAGLDFIRAESFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSSHAITAD 172
A+GLDF+RAE FVF H+ADEGL+NA AG LLRYR+QIGA++V +FTDIKKKHS+HA+T+D
Sbjct: 111 ASGLDFVRAEGFVFSHVADEGLLNACAGDLLRYRRQIGAEHVQIFTDIKKKHSAHALTSD 170
Query: 173 VDITETAKAASFFLSDGLIITGNATGDPADVSQLMSVKNAVDLPILIGSGVTSDNVEHYM 232
V +TA+AA FFLSDGLI+TG ATGDPAD QL V AV +P+LIGSGVT DNV+ Y+
Sbjct: 171 VTTEDTARAAQFFLSDGLILTGAATGDPADPRQLRDVSRAVKIPVLIGSGVTLDNVDRYL 230
Query: 233 TADALIIGSHFKQGG 247
A IIGSHFK GG
Sbjct: 231 DASGWIIGSHFKVGG 245
|
Source: Oryzias latipes Species: Oryzias latipes Genus: Oryzias Family: Adrianichthyidae Order: Beloniformes Class: Actinopterygii Phylum: Chordata Superkingdom: Eukaryota |
| >gi|348500192|ref|XP_003437657.1| PREDICTED: uncharacterized protein F13E9.13, mitochondrial-like [Oreochromis niloticus] | Back alignment and taxonomy information |
|---|
Score = 258 bits (658), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 126/195 (64%), Positives = 154/195 (78%), Gaps = 3/195 (1%)
Query: 53 GVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQ 112
G+IVENMHDVPY L GPE++A MT +C +R P S+P+G QIL+ N+ ALA A
Sbjct: 54 GLIVENMHDVPYSLSV--GPEVSACMTAVCCSVRAACP-SLPIGAQILTAANQQALAVAL 110
Query: 113 AAGLDFIRAESFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSSHAITAD 172
A+GLDFIRAE FVF H+ADEGL+NA AG LLRYRKQIGA++V +FTDIKKKHSSHA+T+D
Sbjct: 111 ASGLDFIRAEGFVFAHVADEGLLNAGAGDLLRYRKQIGAEHVQIFTDIKKKHSSHALTSD 170
Query: 173 VDITETAKAASFFLSDGLIITGNATGDPADVSQLMSVKNAVDLPILIGSGVTSDNVEHYM 232
V + ETA+AA FFLSDG+IITG ATG AD +L V +V +P+LIGSGVT DNVE Y+
Sbjct: 171 VSVAETARAAEFFLSDGIIITGAATGLQADPEELRDVSRSVGIPVLIGSGVTYDNVERYL 230
Query: 233 TADALIIGSHFKQGG 247
A+A+I+GSHFK GG
Sbjct: 231 DANAMIVGSHFKLGG 245
|
Source: Oreochromis niloticus Species: Oreochromis niloticus Genus: Oreochromis Family: Cichlidae Order: Perciformes Class: Actinopterygii Phylum: Chordata Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 251 | ||||||
| ZFIN|ZDB-GENE-070410-62 | 268 | zgc:162297 "zgc:162297" [Danio | 0.764 | 0.716 | 0.625 | 6.2e-62 | |
| UNIPROTKB|E1BSV4 | 268 | LOC415758 "Uncharacterized pro | 0.776 | 0.727 | 0.562 | 3.7e-55 | |
| FB|FBgn0035760 | 275 | CG8607 [Drosophila melanogaste | 0.772 | 0.705 | 0.569 | 3.4e-54 | |
| UNIPROTKB|P39364 | 268 | sgcQ "KpLE2 phage-like element | 0.756 | 0.708 | 0.282 | 2e-11 |
| ZFIN|ZDB-GENE-070410-62 zgc:162297 "zgc:162297" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 633 (227.9 bits), Expect = 6.2e-62, P = 6.2e-62
Identities = 122/195 (62%), Positives = 150/195 (76%)
Query: 53 GVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKXXXXXXX 112
G+I+ENMHD+PY L+ GPE+ A MT +C +R L PS P+GVQILS N
Sbjct: 54 GLIIENMHDIPYTLDV--GPEVCACMTAVCTAVRG-LYPSWPLGVQILSAANHSALAVAL 110
Query: 113 XXGLDFIRAESFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSSHAITAD 172
GLDFIRAE FVF H+ADEGL+NA AG LLRYRK+IGA++V +FTDIKKKHS+HA+TAD
Sbjct: 111 ASGLDFIRAEGFVFSHVADEGLLNACAGELLRYRKRIGAEHVQIFTDIKKKHSAHALTAD 170
Query: 173 VDITETAKAASFFLSDGLIITGNATGDPADVSQLMSVKNAVDLPILIGSGVTSDNVEHYM 232
V I ETA+AA FFLSDG+++TG+ATG AD +L V +V +P+LIGSGVT DNVEHY+
Sbjct: 171 VSIAETAQAAEFFLSDGVVVTGSATGAKADPQELREVSQSVRIPVLIGSGVTDDNVEHYL 230
Query: 233 TADALIIGSHFKQGG 247
A A+IIGSHFK+GG
Sbjct: 231 QASAMIIGSHFKKGG 245
|
|
| UNIPROTKB|E1BSV4 LOC415758 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 569 (205.4 bits), Expect = 3.7e-55, P = 3.7e-55
Identities = 112/199 (56%), Positives = 147/199 (73%)
Query: 49 GVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKXXX 108
GV G+IVENMHD PY L GPE+TA MT + A +R+ L P + +GVQ+L N+
Sbjct: 51 GVD-GLIVENMHDRPYTLCP--GPEVTAAMTAVGAAVRR-LCPHLALGVQVLCAANQQAT 106
Query: 109 XXXXXXGLDFIRAESFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSSHA 168
GLDFIR E FVF H+ADEG++NA AG LLRYRK +GA+N+ +F DIKKKHS+HA
Sbjct: 107 AVALAAGLDFIRVEGFVFSHVADEGIINACAGDLLRYRKLVGAENIQIFADIKKKHSAHA 166
Query: 169 ITADVDITETAKAASFFLSDGLIITGNATGDPADVSQLMSVKNAVDLPILIGSGVTSDNV 228
+TAD+ + ETA AA FL+DG+++TG ATG PAD +L V+ AV +P+LIGSGVT +NV
Sbjct: 167 LTADISVAETASAAELFLADGVVLTGTATGLPADPGELREVQRAVKIPVLIGSGVTLENV 226
Query: 229 EHYMTADALIIGSHFKQGG 247
++Y+ A+ALIIGS+FK+ G
Sbjct: 227 KNYLDANALIIGSYFKREG 245
|
|
| FB|FBgn0035760 CG8607 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 560 (202.2 bits), Expect = 3.4e-54, P = 3.4e-54
Identities = 111/195 (56%), Positives = 139/195 (71%)
Query: 54 VIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKXXXXXXXX 113
V++ENMHD+PYV E G EI A MTRL +R+V+P +P GVQ+L+ NK
Sbjct: 56 VLIENMHDIPYVPERLLGAEIVACMTRLGRAVREVIPQEIPCGVQVLACGNKQALAIARA 115
Query: 114 XGLDFIRAESFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSSHAITADV 173
L FIRAE FVFGH+ADEG +A AG LLRYRK I A++VL+FTD+KKKHSSHAITADV
Sbjct: 116 SQLQFIRAEGFVFGHVADEGFTDACAGDLLRYRKLIDAEDVLIFTDLKKKHSSHAITADV 175
Query: 174 DITETAKAASFFLSDGLIITGNATGDPADVSQLMSVKNAVDLPILIGSGVTSDNVE-HYM 232
+ ETA AA FF++DG+IITG ATG A L + V +P++IGSGVT DN++ +Y
Sbjct: 176 SLLETAHAAEFFMTDGIIITGTATGHAASPEDLQQLSGRVKVPLIIGSGVTRDNIDSYYK 235
Query: 233 TADALIIGSHFKQGG 247
A A+IIGSHFK+ G
Sbjct: 236 DAHAVIIGSHFKRNG 250
|
|
| UNIPROTKB|P39364 sgcQ "KpLE2 phage-like element; predicted nucleoside triphosphatase" [Escherichia coli K-12 (taxid:83333)] | Back alignment and assigned GO terms |
|---|
Score = 168 (64.2 bits), Expect = 2.0e-11, P = 2.0e-11
Identities = 57/202 (28%), Positives = 92/202 (45%)
Query: 49 GVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKXXX 108
GV V+ N +PY+ + PE TA M R+ ++ + +P GV +L
Sbjct: 53 GVD-AVMFSNEFSLPYLTKVR--PETTAAMARIIGQLMSDI--RIPFGVNVLWD-PVASF 106
Query: 109 XXXXXXGLDFIRAESFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSSHA 168
G FIR E F + +D G+ + G +R++ +IGA V +I + + +
Sbjct: 107 DLAMATGAKFIR-EIFTGAYASDFGVWDTNVGETIRHQHRIGAGEVKTLFNIVPEAAVYL 165
Query: 169 ITADVDITETAKAASFFLS-DGLIITGNATGDPADVSQLMSVKNAV-DLPILIGSGVTSD 226
+ DI AK+ F D L ++G G D + L VK V D +L +GV +
Sbjct: 166 --GNRDICSIAKSTVFNNHPDALCVSGLTAGTRTDSALLKRVKETVPDTVVLANTGVCLE 223
Query: 227 NVEHYMT-ADALIIGSHFKQGG 247
NVE ++ AD + + FK+ G
Sbjct: 224 NVEEQLSIADGCVTATTFKKDG 245
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.318 0.136 0.391 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 251 242 0.00096 113 3 11 22 0.43 33
32 0.45 36
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 4
No. of states in DFA: 558 (59 KB)
Total size of DFA: 151 KB (2091 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 19.11u 0.08s 19.19t Elapsed: 00:00:03
Total cpu time: 19.11u 0.08s 19.19t Elapsed: 00:00:03
Start: Thu Aug 15 11:40:48 2013 End: Thu Aug 15 11:40:51 2013
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q58515 | Y1115_METJA | No assigned EC number | 0.3030 | 0.7450 | 0.7164 | yes | N/A |
| Q1NZ26 | YSMU_CAEEL | No assigned EC number | 0.4513 | 0.8804 | 0.7978 | yes | N/A |
| Q5JHL2 | Y2179_PYRKO | No assigned EC number | 0.3147 | 0.7490 | 0.7203 | yes | N/A |
| O29828 | Y419_ARCFU | No assigned EC number | 0.3059 | 0.8247 | 0.8414 | yes | N/A |
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 251 | |||
| COG0434 | 263 | COG0434, SgcQ, Predicted TIM-barrel enzyme [Genera | 4e-47 | |
| pfam03437 | 254 | pfam03437, BtpA, BtpA family | 3e-39 | |
| TIGR00259 | 257 | TIGR00259, thylakoid_BtpA, membrane complex biogen | 2e-36 |
| >gnl|CDD|223511 COG0434, SgcQ, Predicted TIM-barrel enzyme [General function prediction only] | Back alignment and domain information |
|---|
Score = 157 bits (398), Expect = 4e-47
Identities = 76/200 (38%), Positives = 110/200 (55%), Gaps = 9/200 (4%)
Query: 52 HGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATA 111
VIVEN D P++ + GPE A M + E+ + + S+PVGV +L AALA A
Sbjct: 49 DAVIVENYGDAPFLKDV--GPETVAAMAVIVREVVREV--SIPVGVNVLRNDAVAALAIA 104
Query: 112 QAAGLDFIRAESFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSSHAITA 171
A G DFIR + D+G++ A L RYR ++G+ V V D+ KH+ H
Sbjct: 105 YAVGADFIRVNVLTGAYATDQGIIEGNAAELARYRARLGSR-VKVLADVHVKHAVHLGNR 163
Query: 172 DVDITETAK-AASFFLSDGLIITGNATGDPADVSQLMSVKNAVDLPILIGSGVTSDNVEH 230
+ E K L+D +I+TG+ TG P D+ +L K AVD P+L+GSGV +N+E
Sbjct: 164 --SLEEAVKDTVERGLADAVIVTGSRTGSPPDLEELKLAKEAVDTPVLVGSGVNPENIEE 221
Query: 231 YMT-ADALIIGSHFKQGGRT 249
+ AD +I+G+ K+GG T
Sbjct: 222 LLKIADGVIVGTSLKKGGVT 241
|
Length = 263 |
| >gnl|CDD|112262 pfam03437, BtpA, BtpA family | Back alignment and domain information |
|---|
Score = 136 bits (344), Expect = 3e-39
Identities = 69/199 (34%), Positives = 106/199 (53%), Gaps = 9/199 (4%)
Query: 53 GVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQ 112
VI+EN D PY+ GPE A MT + E++ + S+P+G+ +L AALA A
Sbjct: 45 AVILENYGDAPYLKTV--GPETVAAMTVIAGEVKSDV--SIPLGINVLRNDAVAALAIAY 100
Query: 113 AAGLDFIRAESFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSSHAITAD 172
A G DFIR +D+G++ AG L RYRK + + + + D+ KH+ H +
Sbjct: 101 AVGADFIRVNVLTGVAASDQGILEGNAGELARYRKLLPSR-IKILADVHVKHAVH--LGN 157
Query: 173 VDITETAKAASF-FLSDGLIITGNATGDPADVSQLMSVKNAVDLPILIGSGVTSDNVEHY 231
DI L+D +I++G TG D+ +L K V +P+L+GSGV +N+E
Sbjct: 158 RDIESAVLDTIERGLADAVILSGKTTGGEVDLEELKLAKETVPVPVLVGSGVNLENLEEL 217
Query: 232 MT-ADALIIGSHFKQGGRT 249
+ AD I+G+ K+GG+
Sbjct: 218 WSIADGFIVGTSIKKGGKF 236
|
The BtpA protein is tightly associated with the thylakoid membranes, where it stabilises the reaction centre proteins of photosystem I. Length = 254 |
| >gnl|CDD|129361 TIGR00259, thylakoid_BtpA, membrane complex biogenesis protein, BtpA family | Back alignment and domain information |
|---|
Score = 129 bits (325), Expect = 2e-36
Identities = 66/198 (33%), Positives = 104/198 (52%), Gaps = 10/198 (5%)
Query: 53 GVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQ 112
V+ EN D P++ E PE A M + +++ + S+P+G+ +L AALA A
Sbjct: 44 AVMFENFFDAPFLKEV--DPETVAAMAVIAGQLKSDV--SIPLGINVLRNDAVAALAIAM 99
Query: 113 AAGLDFIRAESFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSSHAITAD 172
A G FIR + +D+G++ AG L+RY+K +G++ V + DI KH+ H
Sbjct: 100 AVGAKFIRVNVLTGVYASDQGIIEGNAGELIRYKKLLGSE-VKILADIVVKHAVHLGNR- 157
Query: 173 VDITETAKAASFF-LSDGLIITGNATGDPADVSQLMSVKNAV-DLPILIGSGVTSDNVEH 230
D+ A L+D +I++G TG D+ L K V D P+L GSGV +NVE
Sbjct: 158 -DLESIALDTVERGLADAVILSGKTTGTEVDLELLKLAKETVKDTPVLAGSGVNLENVEE 216
Query: 231 YMT-ADALIIGSHFKQGG 247
++ AD +I+ + K+ G
Sbjct: 217 LLSIADGVIVATTIKKDG 234
|
Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis [Protein fate, Protein folding and stabilization]. Length = 257 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 251 | |||
| COG0434 | 263 | SgcQ Predicted TIM-barrel enzyme [General function | 100.0 | |
| PF03437 | 254 | BtpA: BtpA family; InterPro: IPR005137 Photosystem | 100.0 | |
| TIGR00259 | 257 | thylakoid_BtpA membrane complex biogenesis protein | 100.0 | |
| COG0159 | 265 | TrpA Tryptophan synthase alpha chain [Amino acid t | 100.0 | |
| PLN02591 | 250 | tryptophan synthase | 100.0 | |
| PF00290 | 259 | Trp_syntA: Tryptophan synthase alpha chain; InterP | 100.0 | |
| CHL00200 | 263 | trpA tryptophan synthase alpha subunit; Provisiona | 100.0 | |
| PRK13111 | 258 | trpA tryptophan synthase subunit alpha; Provisiona | 100.0 | |
| KOG4175|consensus | 268 | 100.0 | ||
| TIGR00262 | 256 | trpA tryptophan synthase, alpha subunit. Tryptopha | 100.0 | |
| cd04724 | 242 | Tryptophan_synthase_alpha Ttryptophan synthase (TR | 99.96 | |
| PRK13125 | 244 | trpA tryptophan synthase subunit alpha; Provisiona | 99.9 | |
| TIGR03151 | 307 | enACPred_II putative enoyl-(acyl-carrier-protein) | 99.22 | |
| PRK04169 | 232 | geranylgeranylglyceryl phosphate synthase-like pro | 99.2 | |
| cd00429 | 211 | RPE Ribulose-5-phosphate 3-epimerase (RPE). This e | 99.18 | |
| cd00331 | 217 | IGPS Indole-3-glycerol phosphate synthase (IGPS); | 99.18 | |
| PF03060 | 330 | NMO: Nitronate monooxygenase; InterPro: IPR004136 | 99.17 | |
| TIGR01163 | 210 | rpe ribulose-phosphate 3-epimerase. This family co | 99.12 | |
| PRK01130 | 221 | N-acetylmannosamine-6-phosphate 2-epimerase; Provi | 99.11 | |
| cd04726 | 202 | KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxyl | 99.07 | |
| PRK05581 | 220 | ribulose-phosphate 3-epimerase; Validated | 99.07 | |
| cd04743 | 320 | NPD_PKS 2-Nitropropane dioxygenase (NPD)-like doma | 99.01 | |
| TIGR00007 | 230 | phosphoribosylformimino-5-aminoimidazole carboxami | 98.97 | |
| cd04730 | 236 | NPD_like 2-Nitropropane dioxygenase (NPD), one of | 98.96 | |
| TIGR02814 | 444 | pfaD_fam PfaD family protein. The protein PfaD is | 98.94 | |
| cd04742 | 418 | NPD_FabD 2-Nitropropane dioxygenase (NPD)-like dom | 98.94 | |
| cd04731 | 243 | HisF The cyclase subunit of imidazoleglycerol phos | 98.9 | |
| cd04729 | 219 | NanE N-acetylmannosamine-6-phosphate epimerase (Na | 98.89 | |
| COG0352 | 211 | ThiE Thiamine monophosphate synthase [Coenzyme met | 98.87 | |
| TIGR01769 | 205 | GGGP geranylgeranylglyceryl phosphate synthase. Th | 98.85 | |
| cd04732 | 234 | HisA HisA. Phosphoribosylformimino-5-aminoimidazol | 98.85 | |
| cd00564 | 196 | TMP_TenI Thiamine monophosphate synthase (TMP synt | 98.85 | |
| PRK09140 | 206 | 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; R | 98.83 | |
| TIGR01768 | 223 | GGGP-family geranylgeranylglyceryl phosphate synth | 98.83 | |
| PRK13585 | 241 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 98.82 | |
| PRK07455 | 187 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 98.82 | |
| TIGR01037 | 300 | pyrD_sub1_fam dihydroorotate dehydrogenase (subfam | 98.8 | |
| TIGR03128 | 206 | RuMP_HxlA 3-hexulose-6-phosphate synthase. at the | 98.79 | |
| PRK06552 | 213 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 98.79 | |
| COG2070 | 336 | Dioxygenases related to 2-nitropropane dioxygenase | 98.78 | |
| cd00452 | 190 | KDPG_aldolase KDPG and KHG aldolase. This family b | 98.76 | |
| cd04722 | 200 | TIM_phosphate_binding TIM barrel proteins share a | 98.76 | |
| TIGR03572 | 232 | WbuZ glycosyl amidation-associated protein WbuZ. T | 98.76 | |
| cd02812 | 219 | PcrB_like PcrB_like proteins. One member of this f | 98.76 | |
| PRK00278 | 260 | trpC indole-3-glycerol-phosphate synthase; Reviewe | 98.75 | |
| cd00405 | 203 | PRAI Phosphoribosylanthranilate isomerase (PRAI) c | 98.75 | |
| PRK00748 | 233 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 98.74 | |
| PRK02083 | 253 | imidazole glycerol phosphate synthase subunit HisF | 98.73 | |
| PRK00043 | 212 | thiE thiamine-phosphate pyrophosphorylase; Reviewe | 98.72 | |
| TIGR00735 | 254 | hisF imidazoleglycerol phosphate synthase, cyclase | 98.7 | |
| cd02810 | 289 | DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) | 98.65 | |
| cd04740 | 296 | DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) c | 98.64 | |
| PLN02334 | 229 | ribulose-phosphate 3-epimerase | 98.6 | |
| PRK06512 | 221 | thiamine-phosphate pyrophosphorylase; Provisional | 98.59 | |
| cd04727 | 283 | pdxS PdxS is a subunit of the pyridoxal 5'-phospha | 98.58 | |
| PRK08883 | 220 | ribulose-phosphate 3-epimerase; Provisional | 98.57 | |
| TIGR00343 | 287 | pyridoxal 5'-phosphate synthase, synthase subunit | 98.55 | |
| TIGR00693 | 196 | thiE thiamine-phosphate pyrophosphorylase. This mo | 98.53 | |
| COG1646 | 240 | Predicted phosphate-binding enzymes, TIM-barrel fo | 98.53 | |
| PRK01033 | 258 | imidazole glycerol phosphate synthase subunit HisF | 98.53 | |
| PRK05718 | 212 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 98.51 | |
| PRK13587 | 234 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 98.5 | |
| cd04739 | 325 | DHOD_like Dihydroorotate dehydrogenase (DHOD) like | 98.5 | |
| PRK07028 | 430 | bifunctional hexulose-6-phosphate synthase/ribonuc | 98.5 | |
| PRK04180 | 293 | pyridoxal biosynthesis lyase PdxS; Provisional | 98.47 | |
| COG0269 | 217 | SgbH 3-hexulose-6-phosphate synthase and related p | 98.46 | |
| TIGR00736 | 231 | nifR3_rel_arch TIM-barrel protein, putative. Membe | 98.46 | |
| PF02581 | 180 | TMP-TENI: Thiamine monophosphate synthase/TENI; In | 98.44 | |
| TIGR01182 | 204 | eda Entner-Doudoroff aldolase. 2-deydro-3-deoxypho | 98.42 | |
| cd04723 | 233 | HisA_HisF Phosphoribosylformimino-5-aminoimidazole | 98.42 | |
| cd02809 | 299 | alpha_hydroxyacid_oxid_FMN Family of homologous FM | 98.41 | |
| PRK07259 | 301 | dihydroorotate dehydrogenase 1B; Reviewed | 98.39 | |
| PRK07565 | 334 | dihydroorotate dehydrogenase 2; Reviewed | 98.37 | |
| PRK02615 | 347 | thiamine-phosphate pyrophosphorylase; Provisional | 98.34 | |
| PRK07695 | 201 | transcriptional regulator TenI; Provisional | 98.32 | |
| PRK04302 | 223 | triosephosphate isomerase; Provisional | 98.32 | |
| PRK06015 | 201 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 98.31 | |
| cd04728 | 248 | ThiG Thiazole synthase (ThiG) is the tetrameric en | 98.31 | |
| cd02801 | 231 | DUS_like_FMN Dihydrouridine synthase-like (DUS-lik | 98.31 | |
| cd04738 | 327 | DHOD_2_like Dihydroorotate dehydrogenase (DHOD) cl | 98.3 | |
| PLN02826 | 409 | dihydroorotate dehydrogenase | 98.29 | |
| PRK14024 | 241 | phosphoribosyl isomerase A; Provisional | 98.28 | |
| PF01884 | 230 | PcrB: PcrB family; InterPro: IPR008205 This entry | 98.28 | |
| PF00977 | 229 | His_biosynth: Histidine biosynthesis protein; Inte | 98.28 | |
| PRK08999 | 312 | hypothetical protein; Provisional | 98.26 | |
| PF01081 | 196 | Aldolase: KDPG and KHG aldolase; InterPro: IPR0008 | 98.22 | |
| PRK05286 | 344 | dihydroorotate dehydrogenase 2; Reviewed | 98.22 | |
| PRK00208 | 250 | thiG thiazole synthase; Reviewed | 98.21 | |
| cd02940 | 299 | DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FM | 98.16 | |
| PRK07114 | 222 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 98.14 | |
| PRK10415 | 321 | tRNA-dihydrouridine synthase B; Provisional | 98.13 | |
| cd02803 | 327 | OYE_like_FMN_family Old yellow enzyme (OYE)-like F | 98.13 | |
| COG0800 | 211 | Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Ca | 98.12 | |
| PRK13307 | 391 | bifunctional formaldehyde-activating enzyme/3-hexu | 98.08 | |
| PRK12290 | 437 | thiE thiamine-phosphate pyrophosphorylase; Reviewe | 98.06 | |
| PRK10550 | 312 | tRNA-dihydrouridine synthase C; Provisional | 98.05 | |
| PRK11815 | 333 | tRNA-dihydrouridine synthase A; Provisional | 98.05 | |
| cd02911 | 233 | arch_FMN Archeal FMN-binding domain. This family o | 98.02 | |
| PTZ00170 | 228 | D-ribulose-5-phosphate 3-epimerase; Provisional | 98.02 | |
| TIGR00737 | 319 | nifR3_yhdG putative TIM-barrel protein, nifR3 fami | 98.01 | |
| PRK03512 | 211 | thiamine-phosphate pyrophosphorylase; Provisional | 97.99 | |
| COG3010 | 229 | NanE Putative N-acetylmannosamine-6-phosphate epim | 97.99 | |
| cd04741 | 294 | DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) c | 97.98 | |
| PRK08745 | 223 | ribulose-phosphate 3-epimerase; Provisional | 97.96 | |
| cd02933 | 338 | OYE_like_FMN Old yellow enzyme (OYE)-like FMN bind | 97.94 | |
| cd02932 | 336 | OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN | 97.94 | |
| COG0036 | 220 | Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate | 97.94 | |
| PLN02898 | 502 | HMP-P kinase/thiamin-monophosphate pyrophosphoryla | 97.93 | |
| PRK13586 | 232 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 97.91 | |
| CHL00162 | 267 | thiG thiamin biosynthesis protein G; Validated | 97.9 | |
| TIGR01036 | 335 | pyrD_sub2 dihydroorotate dehydrogenase, subfamily | 97.9 | |
| PF04131 | 192 | NanE: Putative N-acetylmannosamine-6-phosphate epi | 97.9 | |
| PRK13957 | 247 | indole-3-glycerol-phosphate synthase; Provisional | 97.89 | |
| TIGR00734 | 221 | hisAF_rel hisA/hisF family protein. This alignment | 97.88 | |
| PRK08005 | 210 | epimerase; Validated | 97.88 | |
| TIGR00735 | 254 | hisF imidazoleglycerol phosphate synthase, cyclase | 97.87 | |
| PRK05437 | 352 | isopentenyl pyrophosphate isomerase; Provisional | 97.85 | |
| PF00218 | 254 | IGPS: Indole-3-glycerol phosphate synthase; InterP | 97.84 | |
| cd04733 | 338 | OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN | 97.83 | |
| cd00945 | 201 | Aldolase_Class_I Class I aldolases. The class I al | 97.82 | |
| PRK08318 | 420 | dihydropyrimidine dehydrogenase subunit B; Validat | 97.79 | |
| cd04731 | 243 | HisF The cyclase subunit of imidazoleglycerol phos | 97.76 | |
| cd02931 | 382 | ER_like_FMN Enoate reductase (ER)-like FMN-binding | 97.76 | |
| PRK02083 | 253 | imidazole glycerol phosphate synthase subunit HisF | 97.74 | |
| PRK00748 | 233 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 97.73 | |
| cd04734 | 343 | OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN | 97.72 | |
| COG0106 | 241 | HisA Phosphoribosylformimino-5-aminoimidazole carb | 97.71 | |
| PRK09517 | 755 | multifunctional thiamine-phosphate pyrophosphoryla | 97.71 | |
| PLN02446 | 262 | (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methy | 97.69 | |
| PRK08649 | 368 | inosine 5-monophosphate dehydrogenase; Validated | 97.69 | |
| TIGR00742 | 318 | yjbN tRNA dihydrouridine synthase A. Members of th | 97.68 | |
| PRK13523 | 337 | NADPH dehydrogenase NamA; Provisional | 97.68 | |
| COG0134 | 254 | TrpC Indole-3-glycerol phosphate synthase [Amino a | 97.67 | |
| cd02930 | 353 | DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-bindin | 97.66 | |
| cd04732 | 234 | HisA HisA. Phosphoribosylformimino-5-aminoimidazol | 97.65 | |
| cd02811 | 326 | IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl di | 97.61 | |
| cd04737 | 351 | LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding d | 97.61 | |
| PRK14114 | 241 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 97.6 | |
| TIGR01919 | 243 | hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosy | 97.57 | |
| PRK01222 | 210 | N-(5'-phosphoribosyl)anthranilate isomerase; Provi | 97.56 | |
| PRK04128 | 228 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 97.56 | |
| cd00381 | 325 | IMPDH IMPDH: The catalytic domain of the inosine m | 97.54 | |
| PLN02274 | 505 | inosine-5'-monophosphate dehydrogenase | 97.53 | |
| PRK08255 | 765 | salicylyl-CoA 5-hydroxylase; Reviewed | 97.5 | |
| TIGR03572 | 232 | WbuZ glycosyl amidation-associated protein WbuZ. T | 97.49 | |
| COG0167 | 310 | PyrD Dihydroorotate dehydrogenase [Nucleotide tran | 97.47 | |
| TIGR00007 | 230 | phosphoribosylformimino-5-aminoimidazole carboxami | 97.47 | |
| cd04735 | 353 | OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN | 97.45 | |
| cd02922 | 344 | FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding dom | 97.44 | |
| COG0107 | 256 | HisF Imidazoleglycerol-phosphate synthase [Amino a | 97.4 | |
| PF01207 | 309 | Dus: Dihydrouridine synthase (Dus); InterPro: IPR0 | 97.38 | |
| PF00834 | 201 | Ribul_P_3_epim: Ribulose-phosphate 3 epimerase fam | 97.37 | |
| PLN02617 | 538 | imidazole glycerol phosphate synthase hisHF | 97.37 | |
| PLN02460 | 338 | indole-3-glycerol-phosphate synthase | 97.34 | |
| TIGR02151 | 333 | IPP_isom_2 isopentenyl-diphosphate delta-isomerase | 97.34 | |
| TIGR02129 | 253 | hisA_euk phosphoribosylformimino-5-aminoimidazole | 97.34 | |
| PRK13585 | 241 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 97.34 | |
| PRK04128 | 228 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 97.33 | |
| PRK01033 | 258 | imidazole glycerol phosphate synthase subunit HisF | 97.32 | |
| PRK13958 | 207 | N-(5'-phosphoribosyl)anthranilate isomerase; Provi | 97.31 | |
| PRK13802 | 695 | bifunctional indole-3-glycerol phosphate synthase/ | 97.31 | |
| PRK09427 | 454 | bifunctional indole-3-glycerol phosphate synthase/ | 97.31 | |
| PRK13587 | 234 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 97.3 | |
| PRK10605 | 362 | N-ethylmaleimide reductase; Provisional | 97.29 | |
| COG0042 | 323 | tRNA-dihydrouridine synthase [Translation, ribosom | 97.28 | |
| COG0135 | 208 | TrpF Phosphoribosylanthranilate isomerase [Amino a | 97.25 | |
| PRK09722 | 229 | allulose-6-phosphate 3-epimerase; Provisional | 97.25 | |
| PF05690 | 247 | ThiG: Thiazole biosynthesis protein ThiG; InterPro | 97.25 | |
| PRK14024 | 241 | phosphoribosyl isomerase A; Provisional | 97.24 | |
| PF04481 | 242 | DUF561: Protein of unknown function (DUF561); Inte | 97.15 | |
| PRK11840 | 326 | bifunctional sulfur carrier protein/thiazole synth | 97.14 | |
| cd04736 | 361 | MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-bin | 97.13 | |
| cd00331 | 217 | IGPS Indole-3-glycerol phosphate synthase (IGPS); | 97.13 | |
| PRK05458 | 326 | guanosine 5'-monophosphate oxidoreductase; Provisi | 97.13 | |
| PRK06843 | 404 | inosine 5-monophosphate dehydrogenase; Validated | 97.13 | |
| PLN02495 | 385 | oxidoreductase, acting on the CH-CH group of donor | 97.1 | |
| cd03332 | 383 | LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-bindin | 97.09 | |
| cd04723 | 233 | HisA_HisF Phosphoribosylformimino-5-aminoimidazole | 97.07 | |
| PRK14057 | 254 | epimerase; Provisional | 97.04 | |
| cd02929 | 370 | TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) | 97.03 | |
| PF03437 | 254 | BtpA: BtpA family; InterPro: IPR005137 Photosystem | 97.02 | |
| PLN02535 | 364 | glycolate oxidase | 96.99 | |
| cd00958 | 235 | DhnA Class I fructose-1,6-bisphosphate (FBP) aldol | 96.98 | |
| PRK08091 | 228 | ribulose-phosphate 3-epimerase; Validated | 96.97 | |
| PRK02506 | 310 | dihydroorotate dehydrogenase 1A; Reviewed | 96.92 | |
| cd04747 | 361 | OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN | 96.86 | |
| TIGR02129 | 253 | hisA_euk phosphoribosylformimino-5-aminoimidazole | 96.85 | |
| COG0214 | 296 | SNZ1 Pyridoxine biosynthesis enzyme [Coenzyme meta | 96.83 | |
| PRK14114 | 241 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 96.81 | |
| PF03932 | 201 | CutC: CutC family; InterPro: IPR005627 Copper tran | 96.8 | |
| TIGR01949 | 258 | AroFGH_arch predicted phospho-2-dehydro-3-deoxyhep | 96.8 | |
| COG1902 | 363 | NemA NADH:flavin oxidoreductases, Old Yellow Enzym | 96.79 | |
| TIGR01304 | 369 | IMP_DH_rel_2 IMP dehydrogenase family protein. Thi | 96.76 | |
| PRK11197 | 381 | lldD L-lactate dehydrogenase; Provisional | 96.7 | |
| PRK08072 | 277 | nicotinate-nucleotide pyrophosphorylase; Provision | 96.69 | |
| PLN02363 | 256 | phosphoribosylanthranilate isomerase | 96.69 | |
| PRK07807 | 479 | inosine 5-monophosphate dehydrogenase; Validated | 96.69 | |
| PF00977 | 229 | His_biosynth: Histidine biosynthesis protein; Inte | 96.67 | |
| PLN02446 | 262 | (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methy | 96.61 | |
| PRK11572 | 248 | copper homeostasis protein CutC; Provisional | 96.61 | |
| PRK06806 | 281 | fructose-bisphosphate aldolase; Provisional | 96.56 | |
| PLN02979 | 366 | glycolate oxidase | 96.52 | |
| COG2022 | 262 | ThiG Uncharacterized enzyme of thiazole biosynthes | 96.51 | |
| COG0106 | 241 | HisA Phosphoribosylformimino-5-aminoimidazole carb | 96.5 | |
| TIGR01302 | 450 | IMP_dehydrog inosine-5'-monophosphate dehydrogenas | 96.47 | |
| cd01572 | 268 | QPRTase Quinolinate phosphoribosyl transferase (QA | 96.45 | |
| TIGR02708 | 367 | L_lactate_ox L-lactate oxidase. Members of this pr | 96.45 | |
| KOG3111|consensus | 224 | 96.45 | ||
| PF00724 | 341 | Oxidored_FMN: NADH:flavin oxidoreductase / NADH ox | 96.39 | |
| TIGR01919 | 243 | hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosy | 96.37 | |
| PRK05567 | 486 | inosine 5'-monophosphate dehydrogenase; Reviewed | 96.34 | |
| PRK07315 | 293 | fructose-bisphosphate aldolase; Provisional | 96.34 | |
| TIGR00078 | 265 | nadC nicotinate-nucleotide pyrophosphorylase. Syno | 96.34 | |
| cd02808 | 392 | GltS_FMN Glutamate synthase (GltS) FMN-binding dom | 96.32 | |
| COG0107 | 256 | HisF Imidazoleglycerol-phosphate synthase [Amino a | 96.3 | |
| PTZ00314 | 495 | inosine-5'-monophosphate dehydrogenase; Provisiona | 96.3 | |
| PRK09427 | 454 | bifunctional indole-3-glycerol phosphate synthase/ | 96.28 | |
| PRK13813 | 215 | orotidine 5'-phosphate decarboxylase; Provisional | 96.27 | |
| cd01568 | 269 | QPRTase_NadC Quinolinate phosphoribosyl transferas | 96.23 | |
| PLN02617 | 538 | imidazole glycerol phosphate synthase hisHF | 96.21 | |
| PF00697 | 197 | PRAI: N-(5'phosphoribosyl)anthranilate (PRA) isome | 96.2 | |
| PLN02493 | 367 | probable peroxisomal (S)-2-hydroxy-acid oxidase | 96.2 | |
| PRK13586 | 232 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 96.2 | |
| COG4981 | 717 | Enoyl reductase domain of yeast-type FAS1 [Lipid m | 96.18 | |
| PRK07226 | 267 | fructose-bisphosphate aldolase; Provisional | 96.13 | |
| PRK06801 | 286 | hypothetical protein; Provisional | 96.05 | |
| TIGR01859 | 282 | fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, | 96.05 | |
| TIGR01306 | 321 | GMP_reduct_2 guanosine monophosphate reductase, ba | 96.05 | |
| PRK05742 | 277 | nicotinate-nucleotide pyrophosphorylase; Provision | 96.0 | |
| PLN02411 | 391 | 12-oxophytodienoate reductase | 95.86 | |
| PRK13306 | 216 | ulaD 3-keto-L-gulonate-6-phosphate decarboxylase; | 95.76 | |
| TIGR00640 | 132 | acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal | 95.76 | |
| TIGR00259 | 257 | thylakoid_BtpA membrane complex biogenesis protein | 95.73 | |
| KOG1606|consensus | 296 | 95.71 | ||
| COG1411 | 229 | Uncharacterized protein related to proFAR isomeras | 95.7 | |
| PRK07107 | 502 | inosine 5-monophosphate dehydrogenase; Validated | 95.57 | |
| PRK13803 | 610 | bifunctional phosphoribosylanthranilate isomerase/ | 95.54 | |
| KOG2335|consensus | 358 | 95.5 | ||
| PRK07428 | 288 | nicotinate-nucleotide pyrophosphorylase; Provision | 95.47 | |
| TIGR01304 | 369 | IMP_DH_rel_2 IMP dehydrogenase family protein. Thi | 95.42 | |
| COG3142 | 241 | CutC Uncharacterized protein involved in copper re | 95.25 | |
| TIGR00734 | 221 | hisAF_rel hisA/hisF family protein. This alignment | 95.19 | |
| PF01180 | 295 | DHO_dh: Dihydroorotate dehydrogenase; InterPro: IP | 95.14 | |
| PRK11613 | 282 | folP dihydropteroate synthase; Provisional | 95.07 | |
| PRK08649 | 368 | inosine 5-monophosphate dehydrogenase; Validated | 95.06 | |
| cd01573 | 272 | modD_like ModD; Quinolinate phosphoribosyl transfe | 95.01 | |
| TIGR01303 | 475 | IMP_DH_rel_1 IMP dehydrogenase family protein. Thi | 94.91 | |
| COG0113 | 330 | HemB Delta-aminolevulinic acid dehydratase [Coenzy | 94.89 | |
| cd00311 | 242 | TIM Triosephosphate isomerase (TIM) is a glycolyti | 94.83 | |
| cd06557 | 254 | KPHMT-like Ketopantoate hydroxymethyltransferase ( | 94.79 | |
| PF00478 | 352 | IMPDH: IMP dehydrogenase / GMP reductase domain; I | 94.75 | |
| PRK14565 | 237 | triosephosphate isomerase; Provisional | 94.74 | |
| TIGR01303 | 475 | IMP_DH_rel_1 IMP dehydrogenase family protein. Thi | 94.72 | |
| cd00739 | 257 | DHPS DHPS subgroup of Pterin binding enzymes. DHPS | 94.72 | |
| PRK05848 | 273 | nicotinate-nucleotide pyrophosphorylase; Provision | 94.7 | |
| PF01070 | 356 | FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR | 94.58 | |
| PRK05096 | 346 | guanosine 5'-monophosphate oxidoreductase; Provisi | 94.54 | |
| PLN02979 | 366 | glycolate oxidase | 94.53 | |
| cd02071 | 122 | MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 bin | 94.52 | |
| TIGR01302 | 450 | IMP_dehydrog inosine-5'-monophosphate dehydrogenas | 94.47 | |
| PRK05567 | 486 | inosine 5'-monophosphate dehydrogenase; Reviewed | 94.47 | |
| PRK00278 | 260 | trpC indole-3-glycerol-phosphate synthase; Reviewe | 94.46 | |
| PRK13957 | 247 | indole-3-glycerol-phosphate synthase; Provisional | 94.43 | |
| PRK00507 | 221 | deoxyribose-phosphate aldolase; Provisional | 94.24 | |
| PLN02493 | 367 | probable peroxisomal (S)-2-hydroxy-acid oxidase | 94.2 | |
| COG0149 | 251 | TpiA Triosephosphate isomerase [Carbohydrate trans | 94.14 | |
| TIGR01305 | 343 | GMP_reduct_1 guanosine monophosphate reductase, eu | 94.11 | |
| TIGR02708 | 367 | L_lactate_ox L-lactate oxidase. Members of this pr | 94.1 | |
| TIGR01769 | 205 | GGGP geranylgeranylglyceryl phosphate synthase. Th | 94.07 | |
| cd03332 | 383 | LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-bindin | 94.06 | |
| KOG0538|consensus | 363 | 93.9 | ||
| cd02072 | 128 | Glm_B12_BD B12 binding domain of glutamate mutase | 93.9 | |
| TIGR00419 | 205 | tim triosephosphate isomerase. Triosephosphate iso | 93.86 | |
| PTZ00333 | 255 | triosephosphate isomerase; Provisional | 93.73 | |
| TIGR03217 | 333 | 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. | 93.72 | |
| TIGR00222 | 263 | panB 3-methyl-2-oxobutanoate hydroxymethyltransfer | 93.59 | |
| PRK00042 | 250 | tpiA triosephosphate isomerase; Provisional | 93.58 | |
| PTZ00314 | 495 | inosine-5'-monophosphate dehydrogenase; Provisiona | 93.58 | |
| PRK14567 | 253 | triosephosphate isomerase; Provisional | 93.56 | |
| cd02070 | 201 | corrinoid_protein_B12-BD B12 binding domain of cor | 93.55 | |
| PLN02561 | 253 | triosephosphate isomerase | 93.46 | |
| TIGR01496 | 257 | DHPS dihydropteroate synthase. This model represen | 93.44 | |
| cd02067 | 119 | B12-binding B12 binding domain (B12-BD). This doma | 93.4 | |
| TIGR01305 | 343 | GMP_reduct_1 guanosine monophosphate reductase, eu | 93.37 | |
| COG0434 | 263 | SgcQ Predicted TIM-barrel enzyme [General function | 93.29 | |
| cd00377 | 243 | ICL_PEPM Members of the ICL/PEPM enzyme family cat | 93.18 | |
| PLN02535 | 364 | glycolate oxidase | 93.18 | |
| PF04309 | 175 | G3P_antiterm: Glycerol-3-phosphate responsive anti | 92.9 | |
| cd06556 | 240 | ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme sup | 92.87 | |
| PRK13384 | 322 | delta-aminolevulinic acid dehydratase; Provisional | 92.86 | |
| KOG4202|consensus | 227 | 92.85 | ||
| PRK09283 | 323 | delta-aminolevulinic acid dehydratase; Validated | 92.82 | |
| cd00384 | 314 | ALAD_PBGS Porphobilinogen synthase (PBGS), which i | 92.78 | |
| PRK08195 | 337 | 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic ac | 92.77 | |
| TIGR01306 | 321 | GMP_reduct_2 guanosine monophosphate reductase, ba | 92.68 | |
| cd00381 | 325 | IMPDH IMPDH: The catalytic domain of the inosine m | 92.21 | |
| PLN02429 | 315 | triosephosphate isomerase | 92.2 | |
| PRK06843 | 404 | inosine 5-monophosphate dehydrogenase; Validated | 92.1 | |
| COG1830 | 265 | FbaB DhnA-type fructose-1,6-bisphosphate aldolase | 91.89 | |
| PF09370 | 268 | TIM-br_sig_trns: TIM-barrel signal transduction pr | 91.79 | |
| TIGR01501 | 134 | MthylAspMutase methylaspartate mutase, S subunit. | 91.77 | |
| PRK06096 | 284 | molybdenum transport protein ModD; Provisional | 91.77 | |
| cd07944 | 266 | DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase- | 91.7 | |
| PRK00311 | 264 | panB 3-methyl-2-oxobutanoate hydroxymethyltransfer | 91.57 | |
| PRK11320 | 292 | prpB 2-methylisocitrate lyase; Provisional | 91.44 | |
| TIGR02319 | 294 | CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phos | 91.42 | |
| cd04824 | 320 | eu_ALAD_PBGS_cysteine_rich Porphobilinogen synthas | 91.32 | |
| COG0646 | 311 | MetH Methionine synthase I (cobalamin-dependent), | 91.26 | |
| PF02310 | 121 | B12-binding: B12 binding domain; InterPro: IPR0061 | 91.18 | |
| PF00121 | 244 | TIM: Triosephosphate isomerase; InterPro: IPR00065 | 91.17 | |
| PRK15492 | 260 | triosephosphate isomerase; Provisional | 91.12 | |
| cd00959 | 203 | DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of | 91.04 | |
| PRK07535 | 261 | methyltetrahydrofolate:corrinoid/iron-sulfur prote | 90.98 | |
| cd02922 | 344 | FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding dom | 90.96 | |
| PRK07107 | 502 | inosine 5-monophosphate dehydrogenase; Validated | 90.95 | |
| TIGR02317 | 285 | prpB methylisocitrate lyase. Members of this famil | 90.49 | |
| TIGR02370 | 197 | pyl_corrinoid methyltransferase cognate corrinoid | 90.45 | |
| cd08205 | 367 | RuBisCO_IV_RLP Ribulose bisphosphate carboxylase l | 90.45 | |
| PF00809 | 210 | Pterin_bind: Pterin binding enzyme This Prosite en | 90.36 | |
| PF00478 | 352 | IMPDH: IMP dehydrogenase / GMP reductase domain; I | 90.24 | |
| cd02068 | 127 | radical_SAM_B12_BD B12 binding domain_like associa | 90.15 | |
| PRK08385 | 278 | nicotinate-nucleotide pyrophosphorylase; Provision | 90.09 | |
| PRK05096 | 346 | guanosine 5'-monophosphate oxidoreductase; Provisi | 89.84 | |
| COG2185 | 143 | Sbm Methylmalonyl-CoA mutase, C-terminal domain/su | 89.82 | |
| cd02069 | 213 | methionine_synthase_B12_BD B12 binding domain of m | 89.5 | |
| PRK14905 | 355 | triosephosphate isomerase/PTS system glucose/sucro | 89.46 | |
| PLN02424 | 332 | ketopantoate hydroxymethyltransferase | 89.36 | |
| PRK02261 | 137 | methylaspartate mutase subunit S; Provisional | 89.17 | |
| TIGR01740 | 213 | pyrF orotidine 5'-phosphate decarboxylase, subfami | 89.08 | |
| PF01729 | 169 | QRPTase_C: Quinolinate phosphoribosyl transferase, | 89.07 | |
| KOG3055|consensus | 263 | 89.0 | ||
| PLN02274 | 505 | inosine-5'-monophosphate dehydrogenase | 89.0 | |
| COG0329 | 299 | DapA Dihydrodipicolinate synthase/N-acetylneuramin | 88.95 | |
| TIGR01334 | 277 | modD putative molybdenum utilization protein ModD. | 88.87 | |
| TIGR02313 | 294 | HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic ac | 88.63 | |
| cd04823 | 320 | ALAD_PBGS_aspartate_rich Porphobilinogen synthase | 88.08 | |
| cd02811 | 326 | IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl di | 87.74 | |
| cd08210 | 364 | RLP_RrRLP Ribulose bisphosphate carboxylase like p | 87.6 | |
| cd03174 | 265 | DRE_TIM_metallolyase DRE-TIM metallolyase superfam | 87.41 | |
| TIGR02660 | 365 | nifV_homocitr homocitrate synthase NifV. This fami | 87.39 | |
| cd00408 | 281 | DHDPS-like Dihydrodipicolinate synthase family. A | 87.23 | |
| PRK12738 | 286 | kbaY tagatose-bisphosphate aldolase; Reviewed | 87.13 | |
| PRK09195 | 284 | gatY tagatose-bisphosphate aldolase; Reviewed | 86.58 | |
| PRK14566 | 260 | triosephosphate isomerase; Provisional | 86.33 | |
| PRK07896 | 289 | nicotinate-nucleotide pyrophosphorylase; Provision | 86.21 | |
| PRK00366 | 360 | ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate s | 86.02 | |
| TIGR00284 | 499 | dihydropteroate synthase-related protein. This pro | 85.91 | |
| PRK06106 | 281 | nicotinate-nucleotide pyrophosphorylase; Provision | 85.89 | |
| TIGR03249 | 296 | KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-deh | 85.62 | |
| PRK07188 | 352 | nicotinate phosphoribosyltransferase; Provisional | 85.5 | |
| cd00423 | 258 | Pterin_binding Pterin binding enzymes. This family | 85.47 | |
| cd00945 | 201 | Aldolase_Class_I Class I aldolases. The class I al | 85.23 | |
| PRK06559 | 290 | nicotinate-nucleotide pyrophosphorylase; Provision | 84.97 | |
| PRK08185 | 283 | hypothetical protein; Provisional | 84.97 | |
| PLN02716 | 308 | nicotinate-nucleotide diphosphorylase (carboxylati | 84.93 | |
| KOG0538|consensus | 363 | 84.71 | ||
| PRK09426 | 714 | methylmalonyl-CoA mutase; Reviewed | 84.59 | |
| PF00490 | 324 | ALAD: Delta-aminolevulinic acid dehydratase; Inter | 84.59 | |
| cd02809 | 299 | alpha_hydroxyacid_oxid_FMN Family of homologous FM | 84.57 | |
| PRK00230 | 230 | orotidine 5'-phosphate decarboxylase; Reviewed | 84.55 | |
| KOG1436|consensus | 398 | 84.44 | ||
| COG0167 | 310 | PyrD Dihydroorotate dehydrogenase [Nucleotide tran | 84.13 | |
| cd04736 | 361 | MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-bin | 84.1 | |
| cd07937 | 275 | DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcar | 83.87 | |
| COG0821 | 361 | gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphat | 83.79 | |
| PF04481 | 242 | DUF561: Protein of unknown function (DUF561); Inte | 83.76 | |
| cd07939 | 259 | DRE_TIM_NifV Streptomyces rubellomurinus FrbC and | 83.72 | |
| PF01645 | 368 | Glu_synthase: Conserved region in glutamate syntha | 83.62 | |
| PRK09016 | 296 | quinolinate phosphoribosyltransferase; Validated | 83.56 | |
| cd07943 | 263 | DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-te | 83.52 | |
| cd00951 | 289 | KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also | 83.51 | |
| COG0329 | 299 | DapA Dihydrodipicolinate synthase/N-acetylneuramin | 83.32 | |
| COG1646 | 240 | Predicted phosphate-binding enzymes, TIM-barrel fo | 83.28 | |
| cd04740 | 296 | DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) c | 83.27 | |
| PRK06543 | 281 | nicotinate-nucleotide pyrophosphorylase; Provision | 83.23 | |
| PRK06978 | 294 | nicotinate-nucleotide pyrophosphorylase; Provision | 83.17 | |
| COG4126 | 230 | Hydantoin racemase [Amino acid transport and metab | 82.93 | |
| PF04131 | 192 | NanE: Putative N-acetylmannosamine-6-phosphate epi | 82.79 | |
| TIGR00612 | 346 | ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-dipho | 82.76 | |
| PRK12737 | 284 | gatY tagatose-bisphosphate aldolase; Reviewed | 82.45 | |
| PRK04169 | 232 | geranylgeranylglyceryl phosphate synthase-like pro | 82.31 | |
| PRK05437 | 352 | isopentenyl pyrophosphate isomerase; Provisional | 81.92 | |
| cd00958 | 235 | DhnA Class I fructose-1,6-bisphosphate (FBP) aldol | 81.85 | |
| TIGR02026 | 497 | BchE magnesium-protoporphyrin IX monomethyl ester | 81.8 | |
| PRK05458 | 326 | guanosine 5'-monophosphate oxidoreductase; Provisi | 81.65 | |
| cd07948 | 262 | DRE_TIM_HCS Saccharomyces cerevisiae homocitrate s | 81.62 | |
| cd02065 | 125 | B12-binding_like B12 binding domain (B12-BD). Most | 81.4 | |
| TIGR02321 | 290 | Pphn_pyruv_hyd phosphonopyruvate hydrolase. This f | 81.07 | |
| COG1954 | 181 | GlpP Glycerol-3-phosphate responsive antiterminato | 80.96 | |
| TIGR01858 | 282 | tag_bisphos_ald class II aldolase, tagatose bispho | 80.92 | |
| PRK05692 | 287 | hydroxymethylglutaryl-CoA lyase; Provisional | 80.73 | |
| PRK12858 | 340 | tagatose 1,6-diphosphate aldolase; Reviewed | 80.58 | |
| cd02810 | 289 | DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) | 80.49 | |
| PRK03620 | 303 | 5-dehydro-4-deoxyglucarate dehydratase; Provisiona | 80.32 | |
| PF00682 | 237 | HMGL-like: HMGL-like of this family is not conserv | 80.23 | |
| PRK07998 | 283 | gatY putative fructose-1,6-bisphosphate aldolase; | 80.2 |
| >COG0434 SgcQ Predicted TIM-barrel enzyme [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-61 Score=412.60 Aligned_cols=232 Identities=34% Similarity=0.582 Sum_probs=222.4
Q ss_pred EEEeeeecccccccCCCCCCCcchHHHHHHHHHhhCCCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHH
Q psy9039 7 VIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIR 86 (251)
Q Consensus 7 ~~~~~~~~~p~~~~~pG~P~~~~~~~~i~~~a~~~a~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr 86 (251)
-+|+-+||.|+ ||+|.+.+++++|+++|++||.+|+++|+ |+|++|||+|.||++. .||++.++|++++++++
T Consensus 9 ~vIGvvHL~PL----PGsp~~~~~~~~vid~A~~dA~~leegG~-DavivEN~gD~Pf~k~--v~~~tvaaMa~iv~~v~ 81 (263)
T COG0434 9 PVIGVVHLLPL----PGSPYDAGSLEAVIDRAVRDAAALEEGGV-DAVIVENYGDAPFLKD--VGPETVAAMAVIVREVV 81 (263)
T ss_pred ceEEEEecCCC----CCCccccCCHHHHHHHHHHHHHHHHhCCC-cEEEEeccCCCCCCCC--CChHHHHHHHHHHHHHH
Confidence 57899999998 99996668999999999999999999999 9999999999999994 79999999999999999
Q ss_pred HhCCCCccEEEEEeeCChHHHHHHHHHcCccceecccccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHhhccC
Q psy9039 87 KVLPPSVPVGVQILSGCNKAALATAQAAGLDFIRAESFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSS 166 (251)
Q Consensus 87 ~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g~~Fir~~~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~k~~~ 166 (251)
+..+ +|+|+|+++|+++.++++|++.|++|+|+|+|++++++++|+|+++++|++|||++++ .+|++|+|+++||+.
T Consensus 82 r~v~--iPvGvNVLrNd~vaA~~IA~a~gA~FIRVN~~tg~~~tdqGiieg~A~e~~r~r~~L~-~~v~vlADv~VKHa~ 158 (263)
T COG0434 82 REVS--IPVGVNVLRNDAVAALAIAYAVGADFIRVNVLTGAYATDQGIIEGNAAELARYRARLG-SRVKVLADVHVKHAV 158 (263)
T ss_pred Hhcc--ccceeeeeccccHHHHHHHHhcCCCEEEEEeeeceEecccceecchHHHHHHHHHhcc-CCcEEEeecchhccc
Confidence 9999 8999999999999999999999999999999999999999999999999999999999 699999999999999
Q ss_pred CCCCCcccHHHHHHHhh-hccccEEEecCCCCCCCCCHHHHHHHHhcCCCCEEEecCCChHhHHHhhc-CCEEEEeceEe
Q psy9039 167 HAITADVDITETAKAAS-FFLSDGLIITGNATGDPADVSQLMSVKNAVDLPILIGSGVTSDNVEHYMT-ADALIIGSHFK 244 (251)
Q Consensus 167 ~~~~~~~~i~~~a~~a~-~~~~D~v~VTG~~~g~~~~~~~l~~vr~~~~~PV~vG~GI~~~~v~~~~~-ADGvIVGS~~~ 244 (251)
|+ .+.++++.++.+. +.++|++|+||.+||.+++.+.|+.+|+.+++||++|+|++++|+.++|+ |||+||||+||
T Consensus 159 ~l--~~~~~~~~v~dtver~~aDaVI~tG~~TG~~~d~~el~~a~~~~~~pvlvGSGv~~eN~~~~l~~adG~IvgT~lK 236 (263)
T COG0434 159 HL--GNRSLEEAVKDTVERGLADAVIVTGSRTGSPPDLEELKLAKEAVDTPVLVGSGVNPENIEELLKIADGVIVGTSLK 236 (263)
T ss_pred cc--CCcCHHHHHHHHHHccCCCEEEEecccCCCCCCHHHHHHHHhccCCCEEEecCCCHHHHHHHHHHcCceEEEEEEc
Confidence 96 4558999999875 67899999999999999999999999999999999999999999999999 99999999999
Q ss_pred ecCeec
Q psy9039 245 QGGRTF 250 (251)
Q Consensus 245 ~~g~~~ 250 (251)
+||+||
T Consensus 237 ~~G~~~ 242 (263)
T COG0434 237 KGGVTW 242 (263)
T ss_pred cCCEec
Confidence 999987
|
|
| >PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-60 Score=420.84 Aligned_cols=232 Identities=44% Similarity=0.670 Sum_probs=222.6
Q ss_pred EEEeeeecccccccCCCCCCCcchHHHHHHHHHhhCCCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHH
Q psy9039 7 VIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIR 86 (251)
Q Consensus 7 ~~~~~~~~~p~~~~~pG~P~~~~~~~~i~~~a~~~a~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr 86 (251)
.||+-+|+.|+ ||+|.|+++++.|+++|++|+++|+++|+ |+|+||||+|.||..+ .+|++.++|+++++++|
T Consensus 4 piIGmvHL~pL----PGsp~~~~~~~~iie~A~~ea~~l~~~Gv-DgiiveN~~D~Py~~~--~~~etvaaM~~i~~~v~ 76 (254)
T PF03437_consen 4 PIIGMVHLPPL----PGSPRYDGSMEEIIERAVREAEALEEGGV-DGIIVENMGDVPYPKR--VGPETVAAMARIAREVR 76 (254)
T ss_pred CEEEEEcCCCC----CcCCCCCCCHHHHHHHHHHHHHHHHHCCC-CEEEEecCCCCCccCC--CCHHHHHHHHHHHHHHH
Confidence 47889999887 99999999999999999999999999999 9999999999999987 79999999999999999
Q ss_pred HhCCCCccEEEEEeeCChHHHHHHHHHcCccceecccccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHhhccC
Q psy9039 87 KVLPPSVPVGVQILSGCNKAALATAQAAGLDFIRAESFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSS 166 (251)
Q Consensus 87 ~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g~~Fir~~~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~k~~~ 166 (251)
+.++ +|+|+|+++|++.+++++|.++|++|+|++.|+|++++++|++++++.+++|||++++++ +++|+||++||+.
T Consensus 77 ~~~~--~p~GVnvL~nd~~aalaiA~A~ga~FIRv~~~~g~~~~d~G~~~~~a~e~~r~R~~l~a~-v~ilaDV~~kh~~ 153 (254)
T PF03437_consen 77 REVS--VPVGVNVLRNDPKAALAIAAATGADFIRVNVFVGAYVTDEGIIEGCAGELLRYRKRLGAD-VKILADVHVKHSS 153 (254)
T ss_pred HhCC--CCEEeeeecCCCHHHHHHHHHhCCCEEEecCEEceecccCccccccHHHHHHHHHHcCCC-eEEEeeechhhcc
Confidence 9998 899999999999999999999999999999999999999999999999999999999997 9999999999999
Q ss_pred CCCCCcccHHHHHHHhh-hccccEEEecCCCCCCCCCHHHHHHHHhcCCCCEEEecCCChHhHHHhhc-CCEEEEeceEe
Q psy9039 167 HAITADVDITETAKAAS-FFLSDGLIITGNATGDPADVSQLMSVKNAVDLPILIGSGVTSDNVEHYMT-ADALIIGSHFK 244 (251)
Q Consensus 167 ~~~~~~~~i~~~a~~a~-~~~~D~v~VTG~~~g~~~~~~~l~~vr~~~~~PV~vG~GI~~~~v~~~~~-ADGvIVGS~~~ 244 (251)
|+ .++++++.++.+. +.++|+++|||.+||.++++++++++|+.+++||++|+|+|++|+.++++ |||+||||+||
T Consensus 154 ~l--~~~~~~~~~~~a~~~~~aDaviVtG~~TG~~~~~~~l~~vr~~~~~PVlvGSGvt~~Ni~~~l~~ADG~IVGS~~K 231 (254)
T PF03437_consen 154 PL--ATRDLEEAAKDAVERGGADAVIVTGKATGEPPDPEKLKRVREAVPVPVLVGSGVTPENIAEYLSYADGAIVGSYFK 231 (254)
T ss_pred cC--CCCCHHHHHHHHHHhcCCCEEEECCcccCCCCCHHHHHHHHhcCCCCEEEecCCCHHHHHHHHHhCCEEEEeeeee
Confidence 96 5678889988884 68999999999999999999999999999999999999999999999999 99999999999
Q ss_pred ecCeec
Q psy9039 245 QGGRTF 250 (251)
Q Consensus 245 ~~g~~~ 250 (251)
+||+|+
T Consensus 232 ~~G~~~ 237 (254)
T PF03437_consen 232 KDGKWE 237 (254)
T ss_pred eCCEeC
Confidence 999986
|
It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions. |
| >TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-58 Score=405.29 Aligned_cols=232 Identities=31% Similarity=0.517 Sum_probs=221.3
Q ss_pred EEEeeeecccccccCCCCCCCcchHHHHHHHHHhhCCCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHH
Q psy9039 7 VIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIR 86 (251)
Q Consensus 7 ~~~~~~~~~p~~~~~pG~P~~~~~~~~i~~~a~~~a~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr 86 (251)
.+|+-+|+.|. ||+|.|.+++++|+++|++|+++|+++|+ |+|+||||+|+||.. ..+|+|.++|+++++++|
T Consensus 3 pvIGmvHl~pL----PGsP~~~~~~~~i~e~A~~ea~~l~~~Gv-D~viveN~~d~P~~~--~~~p~tva~m~~i~~~v~ 75 (257)
T TIGR00259 3 PVIGMVHLLPL----PGSPSFDDNLNAVIDKAWKDAMALEEGGV-DAVMFENFFDAPFLK--EVDPETVAAMAVIAGQLK 75 (257)
T ss_pred CEEEEEcCCCC----CCCCCCCCCHHHHHHHHHHHHHHHHhCCC-CEEEEecCCCCCCcC--CCCHHHHHHHHHHHHHHH
Confidence 47889999887 99999998999999999999999999999 999999999999987 489999999999999999
Q ss_pred HhCCCCccEEEEEeeCChHHHHHHHHHcCccceecccccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHhhccC
Q psy9039 87 KVLPPSVPVGVQILSGCNKAALATAQAAGLDFIRAESFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSS 166 (251)
Q Consensus 87 ~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g~~Fir~~~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~k~~~ 166 (251)
+.++ +|+|+|+++|++.+++++|.++|++|+|++.|+|++++++|++++++.|++|||++++ .++++|+||++||+.
T Consensus 76 ~~~~--~p~GvnvL~nd~~aal~iA~a~ga~FIRv~~~~g~~~~d~G~~~~~a~e~~r~r~~l~-~~v~i~adV~~kh~~ 152 (257)
T TIGR00259 76 SDVS--IPLGINVLRNDAVAALAIAMAVGAKFIRVNVLTGVYASDQGIIEGNAGELIRYKKLLG-SEVKILADIVVKHAV 152 (257)
T ss_pred HhcC--CCeeeeeecCCCHHHHHHHHHhCCCEEEEccEeeeEecccccccccHHHHHHHHHHcC-CCcEEEeceeecccC
Confidence 9999 8999999999999999999999999999999999999999999999999999999999 699999999999998
Q ss_pred CCCCCcccHHHHHHHhhhc-cccEEEecCCCCCCCCCHHHHHHHHhcC-CCCEEEecCCChHhHHHhhc-CCEEEEeceE
Q psy9039 167 HAITADVDITETAKAASFF-LSDGLIITGNATGDPADVSQLMSVKNAV-DLPILIGSGVTSDNVEHYMT-ADALIIGSHF 243 (251)
Q Consensus 167 ~~~~~~~~i~~~a~~a~~~-~~D~v~VTG~~~g~~~~~~~l~~vr~~~-~~PV~vG~GI~~~~v~~~~~-ADGvIVGS~~ 243 (251)
| +.++++++.++++.|. ++|++||||..||.+.+++.++++|+.. ++|+++|||+|++|++++++ |||+||||+|
T Consensus 153 ~--l~~~~~~e~a~~~~~~~~aDavivtG~~TG~~~d~~~l~~vr~~~~~~PvllggGvt~eNv~e~l~~adGviVgS~~ 230 (257)
T TIGR00259 153 H--LGNRDLESIALDTVERGLADAVILSGKTTGTEVDLELLKLAKETVKDTPVLAGSGVNLENVEELLSIADGVIVATTI 230 (257)
T ss_pred c--CCCCCHHHHHHHHHHhcCCCEEEECcCCCCCCCCHHHHHHHHhccCCCeEEEECCCCHHHHHHHHhhCCEEEECCCc
Confidence 7 5789999999999875 5999999999999999999999999865 79999999999999999999 9999999999
Q ss_pred eecCeec
Q psy9039 244 KQGGRTF 250 (251)
Q Consensus 244 ~~~g~~~ 250 (251)
|++|+|+
T Consensus 231 K~~G~~~ 237 (257)
T TIGR00259 231 KKDGVFN 237 (257)
T ss_pred ccCCccC
Confidence 9999875
|
Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis. |
| >COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-40 Score=292.79 Aligned_cols=199 Identities=25% Similarity=0.401 Sum_probs=175.7
Q ss_pred eecccccccCCCCCCCcchHHHHHHHHHhhCCCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHH-----------
Q psy9039 12 MHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTR----------- 80 (251)
Q Consensus 12 ~~~~p~~~~~pG~P~~~~~~~~i~~~a~~~a~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~----------- 80 (251)
+-++||+|+ |||+++.|.+.+ ++|+++|+ |+|| +|+|||||++|||+||+|..|
T Consensus 17 ~a~i~yit~--GdP~~e~s~e~i--------~~L~~~Ga-D~iE----LGvPfSDPvADGP~Iq~A~~rAL~~g~t~~~~ 81 (265)
T COG0159 17 GALIPYVTA--GDPDLETSLEII--------KTLVEAGA-DILE----LGVPFSDPVADGPTIQAAHLRALAAGVTLEDT 81 (265)
T ss_pred CCeEEEEeC--CCCCHHHHHHHH--------HHHHhCCC-CEEE----ecCCCCCcCccCHHHHHHHHHHHHCCCCHHHH
Confidence 358999999 999999999999 99999999 9996 699999999999999999998
Q ss_pred --HHHHHHHhCCCCccEEEEEeeCChHHHHHHHHHcCccceecccccccccCCCceeecC-----cchhHHHHHhcCCCc
Q psy9039 81 --LCAEIRKVLPPSVPVGVQILSGCNKAALATAQAAGLDFIRAESFVFGHMADEGLMNAQ-----AGPLLRYRKQIGADN 153 (251)
Q Consensus 81 --~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g~~Fir~~~~~~~~~~~~Gli~~d-----a~e~~~~r~~l~~~~ 153 (251)
+++++|+.... +|+++|.|+|+ +.++++ .+|++.+ ...|.+|+++|| +.++..+.++++.+.
T Consensus 82 lel~~~~r~~~~~-~Pivlm~Y~Np-i~~~Gi-----e~F~~~~----~~~GvdGlivpDLP~ee~~~~~~~~~~~gi~~ 150 (265)
T COG0159 82 LELVEEIRAKGVK-VPIVLMTYYNP-IFNYGI-----EKFLRRA----KEAGVDGLLVPDLPPEESDELLKAAEKHGIDP 150 (265)
T ss_pred HHHHHHHHhcCCC-CCEEEEEeccH-HHHhhH-----HHHHHHH----HHcCCCEEEeCCCChHHHHHHHHHHHHcCCcE
Confidence 45778866332 69999999998 999999 4899985 667799999999 667778888888888
Q ss_pred chhhhhhHhhccCCCCCCcccHHHHHHHhh-h-ccccEEEecCCCCCCCCCH-HHHHHHHhcCCCCEEEecCC-ChHhHH
Q psy9039 154 VLVFTDIKKKHSSHAITADVDITETAKAAS-F-FLSDGLIITGNATGDPADV-SQLMSVKNAVDLPILIGSGV-TSDNVE 229 (251)
Q Consensus 154 i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~-~-~~~D~v~VTG~~~g~~~~~-~~l~~vr~~~~~PV~vG~GI-~~~~v~ 229 (251)
|.+++ | +|+++|++++++.++ | |+++..+|||.+....... ++++++|+++++||++|||| ++++++
T Consensus 151 I~lva--------P-tt~~~rl~~i~~~a~GFiY~vs~~GvTG~~~~~~~~~~~~v~~vr~~~~~Pv~vGFGIs~~e~~~ 221 (265)
T COG0159 151 IFLVA--------P-TTPDERLKKIAEAASGFIYYVSRMGVTGARNPVSADVKELVKRVRKYTDVPVLVGFGISSPEQAA 221 (265)
T ss_pred EEEeC--------C-CCCHHHHHHHHHhCCCcEEEEecccccCCCcccchhHHHHHHHHHHhcCCCeEEecCcCCHHHHH
Confidence 88862 4 478899999999996 8 8999999999998755544 78999999999999999999 699999
Q ss_pred Hhhc-CCEEEEeceEee
Q psy9039 230 HYMT-ADALIIGSHFKQ 245 (251)
Q Consensus 230 ~~~~-ADGvIVGS~~~~ 245 (251)
++.+ ||||||||+|++
T Consensus 222 ~v~~~ADGVIVGSAiV~ 238 (265)
T COG0159 222 QVAEAADGVIVGSAIVK 238 (265)
T ss_pred HHHHhCCeEEEcHHHHH
Confidence 9999 999999999976
|
|
| >PLN02591 tryptophan synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-39 Score=283.92 Aligned_cols=197 Identities=23% Similarity=0.326 Sum_probs=172.2
Q ss_pred ecccccccCCCCCCCcchHHHHHHHHHhhCCCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHH------------
Q psy9039 13 HDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTR------------ 80 (251)
Q Consensus 13 ~~~p~~~~~pG~P~~~~~~~~i~~~a~~~a~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~------------ 80 (251)
-++||+++ |+|+++.+.+.+ ++|+++|+ |.|| +|+|||||++|||+||+|..|
T Consensus 3 ~li~yi~a--G~P~~e~~~~~~--------~~l~~~Ga-d~iE----lGiPfSDP~aDGpvIq~a~~rAL~~G~~~~~~~ 67 (250)
T PLN02591 3 AFIPYITA--GDPDLDTTAEAL--------RLLDACGA-DVIE----LGVPYSDPLADGPVIQAAATRALEKGTTLDSVI 67 (250)
T ss_pred ceEEEEeC--CCCCHHHHHHHH--------HHHHHCCC-CEEE----ECCCCCCCcccCHHHHHHHHHHHHcCCCHHHHH
Confidence 37999999 999999999999 89999999 9997 599999999999999999998
Q ss_pred -HHHHHHHhCCCCccEEEEEeeCChHHHHHHHHHcCccceecccccccccCCCceeecC-----cchhHHHHHhcCCCcc
Q psy9039 81 -LCAEIRKVLPPSVPVGVQILSGCNKAALATAQAAGLDFIRAESFVFGHMADEGLMNAQ-----AGPLLRYRKQIGADNV 154 (251)
Q Consensus 81 -~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g~~Fir~~~~~~~~~~~~Gli~~d-----a~e~~~~r~~l~~~~i 154 (251)
+++++|+..+ +|+.+|.|+|+ +.++++ .+|++.+ ..+|.+|+|.|| ..++....++++.+.|
T Consensus 68 ~~~~~~r~~~~--~p~ilm~Y~N~-i~~~G~-----~~F~~~~----~~aGv~GviipDLP~ee~~~~~~~~~~~gl~~I 135 (250)
T PLN02591 68 SMLKEVAPQLS--CPIVLFTYYNP-ILKRGI-----DKFMATI----KEAGVHGLVVPDLPLEETEALRAEAAKNGIELV 135 (250)
T ss_pred HHHHHHhcCCC--CCEEEEecccH-HHHhHH-----HHHHHHH----HHcCCCEEEeCCCCHHHHHHHHHHHHHcCCeEE
Confidence 4577886666 79999999998 899999 5999975 667799999999 5566777788888777
Q ss_pred hhhhhhHhhccCCCCCCcccHHHHHHHhh-h-ccccEEEecCCCCCCCCCH-HHHHHHHhcCCCCEEEecCC-ChHhHHH
Q psy9039 155 LVFTDIKKKHSSHAITADVDITETAKAAS-F-FLSDGLIITGNATGDPADV-SQLMSVKNAVDLPILIGSGV-TSDNVEH 230 (251)
Q Consensus 155 ~i~a~v~~k~~~~~~~~~~~i~~~a~~a~-~-~~~D~v~VTG~~~g~~~~~-~~l~~vr~~~~~PV~vG~GI-~~~~v~~ 230 (251)
.+++ | +++++|+.++++.+. | |+++..+|||.+++.+... +.++++|+++++||++|||| |++|+++
T Consensus 136 ~lv~--------P-tt~~~ri~~ia~~~~gFIY~Vs~~GvTG~~~~~~~~~~~~i~~vk~~~~~Pv~vGFGI~~~e~v~~ 206 (250)
T PLN02591 136 LLTT--------P-TTPTERMKAIAEASEGFVYLVSSTGVTGARASVSGRVESLLQELKEVTDKPVAVGFGISKPEHAKQ 206 (250)
T ss_pred EEeC--------C-CCCHHHHHHHHHhCCCcEEEeeCCCCcCCCcCCchhHHHHHHHHHhcCCCceEEeCCCCCHHHHHH
Confidence 7752 4 366789999999987 7 8899999999998877776 55999999999999999999 5999999
Q ss_pred hhc--CCEEEEeceEee
Q psy9039 231 YMT--ADALIIGSHFKQ 245 (251)
Q Consensus 231 ~~~--ADGvIVGS~~~~ 245 (251)
+++ |||+||||+|++
T Consensus 207 ~~~~GADGvIVGSalVk 223 (250)
T PLN02591 207 IAGWGADGVIVGSAMVK 223 (250)
T ss_pred HHhcCCCEEEECHHHHH
Confidence 986 999999999954
|
|
| >PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4 | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-39 Score=284.81 Aligned_cols=198 Identities=24% Similarity=0.399 Sum_probs=163.4
Q ss_pred eecccccccCCCCCCCcchHHHHHHHHHhhCCCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHH-----------
Q psy9039 12 MHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTR----------- 80 (251)
Q Consensus 12 ~~~~p~~~~~pG~P~~~~~~~~i~~~a~~~a~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~----------- 80 (251)
.-++||+++ |+|+.+.+.+.+ +.|.++|+ |.||| |+|||||.+|||+||.|+.+
T Consensus 10 ~~li~yita--G~P~~~~~~~~~--------~~l~~~Ga-D~iEi----GiPfSDP~ADGpvIq~A~~rAL~~G~~~~~~ 74 (259)
T PF00290_consen 10 KALIPYITA--GYPDLETTLEIL--------KALEEAGA-DIIEI----GIPFSDPVADGPVIQKASQRALKNGFTLEKI 74 (259)
T ss_dssp TEEEEEEET--TSSSHHHHHHHH--------HHHHHTTB-SSEEE----E--SSSCTTSSHHHHHHHHHHHHTT--HHHH
T ss_pred CeEEEEEeC--CCCCHHHHHHHH--------HHHHHcCC-CEEEE----CCCCCCCCCCCHHHHHHHHHHHHCCCCHHHH
Confidence 458999999 999999999999 89999999 99975 99999999999999999997
Q ss_pred --HHHHHH-HhCCCCccEEEEEeeCChHHHHHHHHHcCccceecccccccccCCCceeecC-----cchhHHHHHhcCCC
Q psy9039 81 --LCAEIR-KVLPPSVPVGVQILSGCNKAALATAQAAGLDFIRAESFVFGHMADEGLMNAQ-----AGPLLRYRKQIGAD 152 (251)
Q Consensus 81 --~i~~vr-~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g~~Fir~~~~~~~~~~~~Gli~~d-----a~e~~~~r~~l~~~ 152 (251)
+++++| +... +|+.+|.|+|+ +.++++ .+|++.+ ..+|.+|+|+|| ..++....++.|.+
T Consensus 75 ~~~~~~ir~~~~~--~pivlm~Y~N~-i~~~G~-----e~F~~~~----~~aGvdGlIipDLP~ee~~~~~~~~~~~gl~ 142 (259)
T PF00290_consen 75 FELVKEIRKKEPD--IPIVLMTYYNP-IFQYGI-----ERFFKEA----KEAGVDGLIIPDLPPEESEELREAAKKHGLD 142 (259)
T ss_dssp HHHHHHHHHHCTS--SEEEEEE-HHH-HHHH-H-----HHHHHHH----HHHTEEEEEETTSBGGGHHHHHHHHHHTT-E
T ss_pred HHHHHHHhccCCC--CCEEEEeeccH-Hhccch-----HHHHHHH----HHcCCCEEEEcCCChHHHHHHHHHHHHcCCe
Confidence 468899 4445 69999999998 899998 4899875 566799999999 44555556677777
Q ss_pred cchhhhhhHhhccCCCCCCcccHHHHHHHhh-h-ccccEEEecCCCCCCCCCH-HHHHHHHhcCCCCEEEecCC-ChHhH
Q psy9039 153 NVLVFTDIKKKHSSHAITADVDITETAKAAS-F-FLSDGLIITGNATGDPADV-SQLMSVKNAVDLPILIGSGV-TSDNV 228 (251)
Q Consensus 153 ~i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~-~-~~~D~v~VTG~~~g~~~~~-~~l~~vr~~~~~PV~vG~GI-~~~~v 228 (251)
.|.+++ | +|+++|++++++.+. | |+++..++||.++..+..+ +.++++|+.+++||++|||| |++++
T Consensus 143 ~I~lv~--------p-~t~~~Ri~~i~~~a~gFiY~vs~~GvTG~~~~~~~~l~~~i~~ik~~~~~Pv~vGFGI~~~e~~ 213 (259)
T PF00290_consen 143 LIPLVA--------P-TTPEERIKKIAKQASGFIYLVSRMGVTGSRTELPDELKEFIKRIKKHTDLPVAVGFGISTPEQA 213 (259)
T ss_dssp EEEEEE--------T-TS-HHHHHHHHHH-SSEEEEESSSSSSSTTSSCHHHHHHHHHHHHHTTSS-EEEESSS-SHHHH
T ss_pred EEEEEC--------C-CCCHHHHHHHHHhCCcEEEeeccCCCCCCcccchHHHHHHHHHHHhhcCcceEEecCCCCHHHH
Confidence 777752 3 378899999999887 8 8899999999998665554 77999999999999999999 69999
Q ss_pred HHhhc-CCEEEEeceEee
Q psy9039 229 EHYMT-ADALIIGSHFKQ 245 (251)
Q Consensus 229 ~~~~~-ADGvIVGS~~~~ 245 (251)
+++.. |||+||||+|++
T Consensus 214 ~~~~~~aDGvIVGSa~v~ 231 (259)
T PF00290_consen 214 KKLAAGADGVIVGSAFVK 231 (259)
T ss_dssp HHHHTTSSEEEESHHHHH
T ss_pred HHHHccCCEEEECHHHHH
Confidence 99998 999999999975
|
2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: |
| >CHL00200 trpA tryptophan synthase alpha subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-38 Score=280.48 Aligned_cols=196 Identities=19% Similarity=0.296 Sum_probs=171.4
Q ss_pred ecccccccCCCCCCCcchHHHHHHHHHhhCCCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHH-----------
Q psy9039 13 HDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRL----------- 81 (251)
Q Consensus 13 ~~~p~~~~~pG~P~~~~~~~~i~~~a~~~a~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~----------- 81 (251)
-++||+++ |+|+++.+.+.+ ++|+++|+ |.|| +|+|||||++|||+||+|..|.
T Consensus 16 ali~yi~a--G~P~~~~~~~~~--------~~l~~~Ga-d~iE----lGiPfSDP~aDGpvIq~a~~rAL~~g~~~~~~~ 80 (263)
T CHL00200 16 ALIPFITA--GDPDIVITKKAL--------KILDKKGA-DIIE----LGIPYSDPLADGPIIQEASNRALKQGINLNKIL 80 (263)
T ss_pred cEEEEEeC--CCCCHHHHHHHH--------HHHHHCCC-CEEE----ECCCCCCCCccCHHHHHHHHHHHHcCCCHHHHH
Confidence 58999999 999999999999 89999999 9997 5999999999999999999984
Q ss_pred --HHHHHHhCCCCccEEEEEeeCChHHHHHHHHHcCccceecccccccccCCCceeecC-----cchhHHHHHhcCCCcc
Q psy9039 82 --CAEIRKVLPPSVPVGVQILSGCNKAALATAQAAGLDFIRAESFVFGHMADEGLMNAQ-----AGPLLRYRKQIGADNV 154 (251)
Q Consensus 82 --i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g~~Fir~~~~~~~~~~~~Gli~~d-----a~e~~~~r~~l~~~~i 154 (251)
++++|+..+ +|+.+|.|+|+ ++++++ .+|++.+ ..+|.+|++.|| ..++.+..++.|.+.|
T Consensus 81 ~~~~~~r~~~~--~p~vlm~Y~N~-i~~~G~-----e~F~~~~----~~aGvdgviipDLP~ee~~~~~~~~~~~gi~~I 148 (263)
T CHL00200 81 SILSEVNGEIK--APIVIFTYYNP-VLHYGI-----NKFIKKI----SQAGVKGLIIPDLPYEESDYLISVCNLYNIELI 148 (263)
T ss_pred HHHHHHhcCCC--CCEEEEecccH-HHHhCH-----HHHHHHH----HHcCCeEEEecCCCHHHHHHHHHHHHHcCCCEE
Confidence 577886655 79999999998 899999 5999975 667799999999 5666677788888777
Q ss_pred hhhhhhHhhccCCCCCCcccHHHHHHHhh-h-ccccEEEecCCCCCCCCCH-HHHHHHHhcCCCCEEEecCC-ChHhHHH
Q psy9039 155 LVFTDIKKKHSSHAITADVDITETAKAAS-F-FLSDGLIITGNATGDPADV-SQLMSVKNAVDLPILIGSGV-TSDNVEH 230 (251)
Q Consensus 155 ~i~a~v~~k~~~~~~~~~~~i~~~a~~a~-~-~~~D~v~VTG~~~g~~~~~-~~l~~vr~~~~~PV~vG~GI-~~~~v~~ 230 (251)
.+++ | +|+++|++.+++.+. | |+++..++||.++...... +.++++|+++++|+++|||| +++++++
T Consensus 149 ~lv~--------P-tT~~eri~~i~~~a~gFIY~vS~~GvTG~~~~~~~~~~~~i~~ir~~t~~Pi~vGFGI~~~e~~~~ 219 (263)
T CHL00200 149 LLIA--------P-TSSKSRIQKIARAAPGCIYLVSTTGVTGLKTELDKKLKKLIETIKKMTNKPIILGFGISTSEQIKQ 219 (263)
T ss_pred EEEC--------C-CCCHHHHHHHHHhCCCcEEEEcCCCCCCCCccccHHHHHHHHHHHHhcCCCEEEECCcCCHHHHHH
Confidence 7762 4 367789999999998 8 8899999999986666555 67889999999999999999 5999999
Q ss_pred hhc--CCEEEEeceEe
Q psy9039 231 YMT--ADALIIGSHFK 244 (251)
Q Consensus 231 ~~~--ADGvIVGS~~~ 244 (251)
+.. |||+||||+|+
T Consensus 220 ~~~~GADGvVVGSalv 235 (263)
T CHL00200 220 IKGWNINGIVIGSACV 235 (263)
T ss_pred HHhcCCCEEEECHHHH
Confidence 885 99999999995
|
|
| >PRK13111 trpA tryptophan synthase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-37 Score=270.84 Aligned_cols=197 Identities=23% Similarity=0.378 Sum_probs=170.2
Q ss_pred ecccccccCCCCCCCcchHHHHHHHHHhhCCCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHH-----------
Q psy9039 13 HDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRL----------- 81 (251)
Q Consensus 13 ~~~p~~~~~pG~P~~~~~~~~i~~~a~~~a~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~----------- 81 (251)
-++||+++ |+|+++.+.+.+ ++|+++|+ |.|| +|+|||||++|||+||+|..+.
T Consensus 13 ~li~yi~a--G~P~~~~~~~~~--------~~l~~~Ga-d~iE----lGiPfSDP~aDGpvIq~a~~~AL~~G~~~~~~~ 77 (258)
T PRK13111 13 ALIPYITA--GDPDLETSLEII--------KALVEAGA-DIIE----LGIPFSDPVADGPVIQAASLRALAAGVTLADVF 77 (258)
T ss_pred cEEEEEeC--CCCCHHHHHHHH--------HHHHHCCC-CEEE----ECCCCCCCcccCHHHHHHHHHHHHcCCCHHHHH
Confidence 58999999 999999999999 88999999 9997 5999999999999999998874
Q ss_pred --HHHHHHh-CCCCccEEEEEeeCChHHHHHHHHHcCccceecccccccccCCCceeecC-----cchhHHHHHhcCCCc
Q psy9039 82 --CAEIRKV-LPPSVPVGVQILSGCNKAALATAQAAGLDFIRAESFVFGHMADEGLMNAQ-----AGPLLRYRKQIGADN 153 (251)
Q Consensus 82 --i~~vr~~-~~~~~P~Gvn~~~N~~~~~~~ia~a~g~~Fir~~~~~~~~~~~~Gli~~d-----a~e~~~~r~~l~~~~ 153 (251)
++++|+. .+ +|+.+|.|+|+ +.++++ .+|++.+ ..+|.+|++.|| ..++....+++|.+.
T Consensus 78 ~~~~~~r~~~~~--~p~vlm~Y~N~-i~~~G~-----e~f~~~~----~~aGvdGviipDLp~ee~~~~~~~~~~~gl~~ 145 (258)
T PRK13111 78 ELVREIREKDPT--IPIVLMTYYNP-IFQYGV-----ERFAADA----AEAGVDGLIIPDLPPEEAEELRAAAKKHGLDL 145 (258)
T ss_pred HHHHHHHhcCCC--CCEEEEecccH-HhhcCH-----HHHHHHH----HHcCCcEEEECCCCHHHHHHHHHHHHHcCCcE
Confidence 5778844 44 69999999998 899999 5899975 667799999999 556666677788777
Q ss_pred chhhhhhHhhccCCCCCCcccHHHHHHHhh-h-ccccEEEecCCCCCCCCCH-HHHHHHHhcCCCCEEEecCC-ChHhHH
Q psy9039 154 VLVFTDIKKKHSSHAITADVDITETAKAAS-F-FLSDGLIITGNATGDPADV-SQLMSVKNAVDLPILIGSGV-TSDNVE 229 (251)
Q Consensus 154 i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~-~-~~~D~v~VTG~~~g~~~~~-~~l~~vr~~~~~PV~vG~GI-~~~~v~ 229 (251)
|.+++ | +++++|++.+++.+. | |+++..++||.+++.+... +.++++|+.+++||++|||| +++++.
T Consensus 146 I~lva--------p-~t~~eri~~i~~~s~gfIY~vs~~GvTG~~~~~~~~~~~~i~~vk~~~~~pv~vGfGI~~~e~v~ 216 (258)
T PRK13111 146 IFLVA--------P-TTTDERLKKIASHASGFVYYVSRAGVTGARSADAADLAELVARLKAHTDLPVAVGFGISTPEQAA 216 (258)
T ss_pred EEEeC--------C-CCCHHHHHHHHHhCCCcEEEEeCCCCCCcccCCCccHHHHHHHHHhcCCCcEEEEcccCCHHHHH
Confidence 77652 3 366789999998887 7 7889999999988887776 68999999999999999999 799999
Q ss_pred Hhhc-CCEEEEeceEee
Q psy9039 230 HYMT-ADALIIGSHFKQ 245 (251)
Q Consensus 230 ~~~~-ADGvIVGS~~~~ 245 (251)
+++. |||+||||+|++
T Consensus 217 ~~~~~ADGviVGSaiv~ 233 (258)
T PRK13111 217 AIAAVADGVIVGSALVK 233 (258)
T ss_pred HHHHhCCEEEEcHHHHH
Confidence 9999 999999999965
|
|
| >KOG4175|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-35 Score=248.40 Aligned_cols=197 Identities=21% Similarity=0.306 Sum_probs=166.9
Q ss_pred ecccccccCCCCCCCcchHHHHHHHHHhhCCCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHH-----------
Q psy9039 13 HDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRL----------- 81 (251)
Q Consensus 13 ~~~p~~~~~pG~P~~~~~~~~i~~~a~~~a~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~----------- 81 (251)
-++||+|+ |+|+.+.+.+.+ +-|+++|. |.|+ +|+|||||++|||.||++..+.
T Consensus 19 aLvtfiTa--G~P~v~~T~kil--------kglq~gG~-dIIE----LGvPfSDp~ADGPtIq~~n~~aL~ng~tl~~i~ 83 (268)
T KOG4175|consen 19 ALVTFITA--GDPDVSTTAKIL--------KGLQSGGS-DIIE----LGVPFSDPLADGPTIQAANRRALLNGTTLNSII 83 (268)
T ss_pred eEEEEEec--CCCcHHHHHHHH--------HHHhcCCc-CeEE----ecCccCccccCCchhhhhHHHHHHcCCcHHHHH
Confidence 58999999 999999999999 99999999 9996 6999999999999999999973
Q ss_pred --HHHHHHh-CCCCccEEEEEeeCChHHHHHHHHHcCccceecccccccccCCCceeecC-----cchhHHHHHhcCCCc
Q psy9039 82 --CAEIRKV-LPPSVPVGVQILSGCNKAALATAQAAGLDFIRAESFVFGHMADEGLMNAQ-----AGPLLRYRKQIGADN 153 (251)
Q Consensus 82 --i~~vr~~-~~~~~P~Gvn~~~N~~~~~~~ia~a~g~~Fir~~~~~~~~~~~~Gli~~d-----a~e~~~~r~~l~~~~ 153 (251)
+++.|.+ .. +|+.+|.|||+ +..++. ++|+++. ..+|..|+|++| +..+..++++.+.+.
T Consensus 84 emvk~ar~~gvt--~PIiLmgYYNP-Il~yG~-----e~~iq~a----k~aGanGfiivDlPpEEa~~~Rne~~k~gisl 151 (268)
T KOG4175|consen 84 EMVKEARPQGVT--CPIILMGYYNP-ILRYGV-----ENYIQVA----KNAGANGFIIVDLPPEEAETLRNEARKHGISL 151 (268)
T ss_pred HHHHHhcccCcc--cceeeeecccH-HHhhhH-----HHHHHHH----HhcCCCceEeccCChHHHHHHHHHHHhcCceE
Confidence 3455544 44 79999999998 999999 5999974 667799999999 344445556666666
Q ss_pred chhhhhhHhhccCCCCCCcccHHHHHHHhh-h-ccccEEEecCCCCCCCCCH-HHHHHHHhcC-CCCEEEecCC-ChHhH
Q psy9039 154 VLVFTDIKKKHSSHAITADVDITETAKAAS-F-FLSDGLIITGNATGDPADV-SQLMSVKNAV-DLPILIGSGV-TSDNV 228 (251)
Q Consensus 154 i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~-~-~~~D~v~VTG~~~g~~~~~-~~l~~vr~~~-~~PV~vG~GI-~~~~v 228 (251)
+.+++ | .|+++|++.++..|. | |.++.+++||.+......+ ++++|+|+.+ +.|+.+|||| ++|++
T Consensus 152 vpLva--------P-sTtdeRmell~~~adsFiYvVSrmG~TG~~~svn~~l~~L~qrvrk~t~dtPlAVGFGvst~EHf 222 (268)
T KOG4175|consen 152 VPLVA--------P-STTDERMELLVEAADSFIYVVSRMGVTGTRESVNEKLQSLLQRVRKATGDTPLAVGFGVSTPEHF 222 (268)
T ss_pred EEeeC--------C-CChHHHHHHHHHhhcceEEEEEeccccccHHHHHHHHHHHHHHHHHhcCCCceeEeeccCCHHHH
Confidence 66542 4 378899999999987 7 8899999999987766655 7899999998 9999999999 69999
Q ss_pred HHhhc-CCEEEEeceEee
Q psy9039 229 EHYMT-ADALIIGSHFKQ 245 (251)
Q Consensus 229 ~~~~~-ADGvIVGS~~~~ 245 (251)
.++-. |||++|||.+++
T Consensus 223 ~qVgsvaDGVvvGSkiv~ 240 (268)
T KOG4175|consen 223 KQVGSVADGVVVGSKIVK 240 (268)
T ss_pred HhhhhhccceEecHHHHH
Confidence 99998 999999999864
|
|
| >TIGR00262 trpA tryptophan synthase, alpha subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-34 Score=254.44 Aligned_cols=197 Identities=19% Similarity=0.355 Sum_probs=166.8
Q ss_pred ecccccccCCCCCCCcchHHHHHHHHHhhCCCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHH-----------
Q psy9039 13 HDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRL----------- 81 (251)
Q Consensus 13 ~~~p~~~~~pG~P~~~~~~~~i~~~a~~~a~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~----------- 81 (251)
-++||+++ |+|+.+.+.+.+ ++|+++|+ |.|| +|+|||||++|||+||+|..|.
T Consensus 11 ~li~y~~a--G~P~~~~~~~~~--------~~l~~~Ga-d~iE----lGiPfsDP~aDGpvIq~a~~~al~~G~~~~~~~ 75 (256)
T TIGR00262 11 AFIPFVTA--GDPTLETSLEII--------KTLIEAGA-DALE----LGVPFSDPLADGPTIQAADLRALRAGMTPEKCF 75 (256)
T ss_pred eEEEEEeC--CCCCHHHHHHHH--------HHHHHcCC-CEEE----ECCCCCCCCCcCHHHHHHHHHHHHcCCCHHHHH
Confidence 58999999 999999999999 89999999 9997 5999999999999999999985
Q ss_pred --HHHHHHh-CCCCccEEEEEeeCChHHHHHHHHHcCccceecccccccccCCCceeecC-----cchhHHHHHhcCCCc
Q psy9039 82 --CAEIRKV-LPPSVPVGVQILSGCNKAALATAQAAGLDFIRAESFVFGHMADEGLMNAQ-----AGPLLRYRKQIGADN 153 (251)
Q Consensus 82 --i~~vr~~-~~~~~P~Gvn~~~N~~~~~~~ia~a~g~~Fir~~~~~~~~~~~~Gli~~d-----a~e~~~~r~~l~~~~ 153 (251)
++++|+. .+ +|+.+|.|+|+ +.++++ .+|++.+ ..+|.+|++.+| ..++....++.+.+.
T Consensus 76 ~~v~~ir~~~~~--~plv~m~Y~Np-i~~~G~-----e~f~~~~----~~aGvdgviipDlp~ee~~~~~~~~~~~gl~~ 143 (256)
T TIGR00262 76 ELLKKVRQKHPN--IPIGLLTYYNL-IFRKGV-----EEFYAKC----KEVGVDGVLVADLPLEESGDLVEAAKKHGVKP 143 (256)
T ss_pred HHHHHHHhcCCC--CCEEEEEeccH-HhhhhH-----HHHHHHH----HHcCCCEEEECCCChHHHHHHHHHHHHCCCcE
Confidence 6788876 56 79889999997 899999 4888874 567799999999 445556667777666
Q ss_pred chhhhhhHhhccCCCCCCcccHHHHHHHhh-h-ccccEEEecCCCCCCCCC-HHHHHHHHhcCCCCEEEecCC-ChHhHH
Q psy9039 154 VLVFTDIKKKHSSHAITADVDITETAKAAS-F-FLSDGLIITGNATGDPAD-VSQLMSVKNAVDLPILIGSGV-TSDNVE 229 (251)
Q Consensus 154 i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~-~-~~~D~v~VTG~~~g~~~~-~~~l~~vr~~~~~PV~vG~GI-~~~~v~ 229 (251)
+.+++ | +|+.+++..+++.+. | |.++..++||.++...++ .++++++|+.+++||++|||| |+++++
T Consensus 144 i~lv~--------P-~T~~eri~~i~~~~~gfiy~vs~~G~TG~~~~~~~~~~~~i~~lr~~~~~pi~vgfGI~~~e~~~ 214 (256)
T TIGR00262 144 IFLVA--------P-NADDERLKQIAEKSQGFVYLVSRAGVTGARNRAASALNELVKRLKAYSAKPVLVGFGISKPEQVK 214 (256)
T ss_pred EEEEC--------C-CCCHHHHHHHHHhCCCCEEEEECCCCCCCcccCChhHHHHHHHHHhhcCCCEEEeCCCCCHHHHH
Confidence 65652 3 256678889998887 7 777877999998666555 488999999999999999999 599999
Q ss_pred Hhhc--CCEEEEeceEee
Q psy9039 230 HYMT--ADALIIGSHFKQ 245 (251)
Q Consensus 230 ~~~~--ADGvIVGS~~~~ 245 (251)
++.. |||+||||+|++
T Consensus 215 ~~~~~GADgvVvGSaiv~ 232 (256)
T TIGR00262 215 QAIDAGADGVIVGSAIVK 232 (256)
T ss_pred HHHHcCCCEEEECHHHHH
Confidence 9886 999999999975
|
Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences. |
| >cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA) | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.5e-30 Score=226.98 Aligned_cols=196 Identities=24% Similarity=0.392 Sum_probs=159.9
Q ss_pred cccccccCCCCCCCcchHHHHHHHHHhhCCCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHH-------------H
Q psy9039 14 DVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMT-------------R 80 (251)
Q Consensus 14 ~~p~~~~~pG~P~~~~~~~~i~~~a~~~a~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~-------------~ 80 (251)
++||+++ |+|+++.+.+.+ +.|+++|+ |.|+ +|+|||||.+|||.+|.+.. .
T Consensus 2 li~y~~~--G~P~~~~~~~~~--------~~l~~~Ga-d~ie----l~iPfsdPv~DG~~I~~a~~~al~~g~~~~~~~~ 66 (242)
T cd04724 2 LIPYITA--GDPDLETTLEIL--------KALVEAGA-DIIE----LGIPFSDPVADGPVIQAASERALANGVTLKDVLE 66 (242)
T ss_pred cEEEEeC--CCCCHHHHHHHH--------HHHHHCCC-CEEE----ECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHH
Confidence 6899999 999999888888 88999999 9997 59999999999999998773 4
Q ss_pred HHHHHHHhCCCCccEEEEEeeCChHHHHHHHHHcCccceecccccccccCCCceeecC-----cchhHHHHHhcCCCcch
Q psy9039 81 LCAEIRKVLPPSVPVGVQILSGCNKAALATAQAAGLDFIRAESFVFGHMADEGLMNAQ-----AGPLLRYRKQIGADNVL 155 (251)
Q Consensus 81 ~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g~~Fir~~~~~~~~~~~~Gli~~d-----a~e~~~~r~~l~~~~i~ 155 (251)
+++++|+..+ +|+.+|+|+|+ ..++|+ .+|++.+ ..+|.+|++.|| ..++.+..++++.+.+.
T Consensus 67 ~~~~vr~~~~--~pv~lm~y~n~-~~~~G~-----~~fi~~~----~~aG~~giiipDl~~ee~~~~~~~~~~~g~~~i~ 134 (242)
T cd04724 67 LVKEIRKKNT--IPIVLMGYYNP-ILQYGL-----ERFLRDA----KEAGVDGLIIPDLPPEEAEEFREAAKEYGLDLIF 134 (242)
T ss_pred HHHHHhhcCC--CCEEEEEecCH-HHHhCH-----HHHHHHH----HHCCCcEEEECCCCHHHHHHHHHHHHHcCCcEEE
Confidence 7788988776 79999999998 888888 4888875 556789999988 22444555666655555
Q ss_pred hhhhhHhhccCCCCCCcccHHHHHHHhh-h-ccccEEEecCCCCCCCCCH-HHHHHHHhcCCCCEEEecCCC-hHhHHHh
Q psy9039 156 VFTDIKKKHSSHAITADVDITETAKAAS-F-FLSDGLIITGNATGDPADV-SQLMSVKNAVDLPILIGSGVT-SDNVEHY 231 (251)
Q Consensus 156 i~a~v~~k~~~~~~~~~~~i~~~a~~a~-~-~~~D~v~VTG~~~g~~~~~-~~l~~vr~~~~~PV~vG~GI~-~~~v~~~ 231 (251)
+++ | .|+.++++.+++.+. | |.++..++||.+++...+. +.++++|+.+++||++||||+ ++|++++
T Consensus 135 ~i~--------P-~T~~~~i~~i~~~~~~~vy~~s~~g~tG~~~~~~~~~~~~i~~lr~~~~~pI~vggGI~~~e~~~~~ 205 (242)
T cd04724 135 LVA--------P-TTPDERIKKIAELASGFIYYVSRTGVTGARTELPDDLKELIKRIRKYTDLPIAVGFGISTPEQAAEV 205 (242)
T ss_pred EeC--------C-CCCHHHHHHHHhhCCCCEEEEeCCCCCCCccCCChhHHHHHHHHHhcCCCcEEEEccCCCHHHHHHH
Confidence 442 3 356678888877454 6 6778788999887665554 889999999999999999995 8899999
Q ss_pred hc-CCEEEEeceEee
Q psy9039 232 MT-ADALIIGSHFKQ 245 (251)
Q Consensus 232 ~~-ADGvIVGS~~~~ 245 (251)
.. |||+||||+|.+
T Consensus 206 ~~~ADgvVvGSaiv~ 220 (242)
T cd04724 206 AKYADGVIVGSALVK 220 (242)
T ss_pred HccCCEEEECHHHHH
Confidence 98 999999999864
|
TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan. |
| >PRK13125 trpA tryptophan synthase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.5e-24 Score=189.86 Aligned_cols=192 Identities=19% Similarity=0.267 Sum_probs=145.0
Q ss_pred cccccccCCCCCCCcchHHHHHHHHHhhCCCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHH--------HHHHH
Q psy9039 14 DVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTR--------LCAEI 85 (251)
Q Consensus 14 ~~p~~~~~pG~P~~~~~~~~i~~~a~~~a~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~--------~i~~v 85 (251)
++||+++ |+|+.+.+.+.+ +.|+++ + |+|| +|+|||||.+|||++|++..+ +++++
T Consensus 6 ~i~y~~~--G~p~~~~~~~~~--------~~l~~~-a-d~iE----lgip~sdp~adG~~i~~~~~~a~~~g~~~~v~~v 69 (244)
T PRK13125 6 LVVYLTA--GYPNVESFKEFI--------IGLVEL-V-DILE----LGIPPKYPKYDGPVIRKSHRKVKGLDIWPLLEEV 69 (244)
T ss_pred eEEEEeC--CCCCHHHHHHHH--------HHHHhh-C-CEEE----ECCCCCCCCCCCHHHHHHHHHHHHcCcHHHHHHH
Confidence 7999999 999999988877 777777 9 9997 599999999999999999998 67888
Q ss_pred HHhCCCCccEEEEEeeCChHHHHHHHHHcCccceecccccccccCCCceeecC--------cchhHHHHHhcCCCcchhh
Q psy9039 86 RKVLPPSVPVGVQILSGCNKAALATAQAAGLDFIRAESFVFGHMADEGLMNAQ--------AGPLLRYRKQIGADNVLVF 157 (251)
Q Consensus 86 r~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g~~Fir~~~~~~~~~~~~Gli~~d--------a~e~~~~r~~l~~~~i~i~ 157 (251)
|+.++ +|+.+|+|+|+ . ..+. .+|++.. ...|.+|++.+| ..++.++.+++|.+.+..+
T Consensus 70 r~~~~--~Pl~lM~y~n~-~-~~~~-----~~~i~~~----~~~Gadgvii~dlp~e~~~~~~~~~~~~~~~Gl~~~~~v 136 (244)
T PRK13125 70 RKDVS--VPIILMTYLED-Y-VDSL-----DNFLNMA----RDVGADGVLFPDLLIDYPDDLEKYVEIIKNKGLKPVFFT 136 (244)
T ss_pred hccCC--CCEEEEEecch-h-hhCH-----HHHHHHH----HHcCCCEEEECCCCCCcHHHHHHHHHHHHHcCCCEEEEE
Confidence 87777 79999999997 2 4444 2565543 345688888875 2345556677776544443
Q ss_pred hhhHhhccCCCCCCcccHHHHHHHhh-hccccEEEecCCCCCCCCCH-HHHHHHHhcC-CCCEEEecCC-ChHhHHHhhc
Q psy9039 158 TDIKKKHSSHAITADVDITETAKAAS-FFLSDGLIITGNATGDPADV-SQLMSVKNAV-DLPILIGSGV-TSDNVEHYMT 233 (251)
Q Consensus 158 a~v~~k~~~~~~~~~~~i~~~a~~a~-~~~~D~v~VTG~~~g~~~~~-~~l~~vr~~~-~~PV~vG~GI-~~~~v~~~~~ 233 (251)
+ | .|+.++++.+++.+. +-+.+....||.+ ..++. +.++++|+.. +.|+++|||| |++++++++.
T Consensus 137 ---~-----p-~T~~e~l~~~~~~~~~~l~msv~~~~g~~--~~~~~~~~i~~lr~~~~~~~i~v~gGI~~~e~i~~~~~ 205 (244)
T PRK13125 137 ---S-----P-KFPDLLIHRLSKLSPLFIYYGLRPATGVP--LPVSVERNIKRVRNLVGNKYLVVGFGLDSPEDARDALS 205 (244)
T ss_pred ---C-----C-CCCHHHHHHHHHhCCCEEEEEeCCCCCCC--chHHHHHHHHHHHHhcCCCCEEEeCCcCCHHHHHHHHH
Confidence 2 2 245567777776665 3233444566652 34444 6788999988 5899999999 8999999764
Q ss_pred --CCEEEEeceEee
Q psy9039 234 --ADALIIGSHFKQ 245 (251)
Q Consensus 234 --ADGvIVGS~~~~ 245 (251)
|||++|||+|++
T Consensus 206 ~gaD~vvvGSai~~ 219 (244)
T PRK13125 206 AGADGVVVGTAFIE 219 (244)
T ss_pred cCCCEEEECHHHHH
Confidence 999999999975
|
|
| >TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II | Back alignment and domain information |
|---|
Probab=99.22 E-value=7.5e-11 Score=107.56 Aligned_cols=140 Identities=18% Similarity=0.292 Sum_probs=99.0
Q ss_pred HHHHHHHHHHHHHhCCCCccEEEEEeeCCh--HHHHHHHHHcCccceecccccccccCCCceeecCcchhHHHHHhcCCC
Q psy9039 75 TANMTRLCAEIRKVLPPSVPVGVQILSGCN--KAALATAQAAGLDFIRAESFVFGHMADEGLMNAQAGPLLRYRKQIGAD 152 (251)
Q Consensus 75 ~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~--~~~~~ia~a~g~~Fir~~~~~~~~~~~~Gli~~da~e~~~~r~~l~~~ 152 (251)
.+.+.+.++++|+.++ .|||+|+....+ ...+.++...+.+++... .| ...++.+.-++.+
T Consensus 47 ~~~l~~~i~~~~~~t~--~pfgvn~~~~~~~~~~~~~~~~~~~v~~v~~~---------~g----~p~~~i~~lk~~g-- 109 (307)
T TIGR03151 47 PDVVRKEIRKVKELTD--KPFGVNIMLLSPFVDELVDLVIEEKVPVVTTG---------AG----NPGKYIPRLKENG-- 109 (307)
T ss_pred HHHHHHHHHHHHHhcC--CCcEEeeecCCCCHHHHHHHHHhCCCCEEEEc---------CC----CcHHHHHHHHHcC--
Confidence 4567888999998887 799999987432 233566666777776531 11 1123444444443
Q ss_pred cchhhhhhHhhccCCCCCCcccHHHHHHHhhhccccEEEecCCCCCCC----CCHHHHHHHHhcCCCCEEEecCC-ChHh
Q psy9039 153 NVLVFTDIKKKHSSHAITADVDITETAKAASFFLSDGLIITGNATGDP----ADVSQLMSVKNAVDLPILIGSGV-TSDN 227 (251)
Q Consensus 153 ~i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~~~~~D~v~VTG~~~g~~----~~~~~l~~vr~~~~~PV~vG~GI-~~~~ 227 (251)
++++.++ +..+.++.+...|+|.++++|...|.. ++..+++++++.+++||++.||| ++++
T Consensus 110 -~~v~~~v-------------~s~~~a~~a~~~GaD~Ivv~g~eagGh~g~~~~~~ll~~v~~~~~iPviaaGGI~~~~~ 175 (307)
T TIGR03151 110 -VKVIPVV-------------ASVALAKRMEKAGADAVIAEGMESGGHIGELTTMALVPQVVDAVSIPVIAAGGIADGRG 175 (307)
T ss_pred -CEEEEEc-------------CCHHHHHHHHHcCCCEEEEECcccCCCCCCCcHHHHHHHHHHHhCCCEEEECCCCCHHH
Confidence 4554321 223456777777999999999755543 35788999999999999999999 7898
Q ss_pred HHHhhc--CCEEEEeceEee
Q psy9039 228 VEHYMT--ADALIIGSHFKQ 245 (251)
Q Consensus 228 v~~~~~--ADGvIVGS~~~~ 245 (251)
+++++. ||||.+||.|.-
T Consensus 176 ~~~al~~GA~gV~iGt~f~~ 195 (307)
T TIGR03151 176 MAAAFALGAEAVQMGTRFLC 195 (307)
T ss_pred HHHHHHcCCCEeecchHHhc
Confidence 988886 999999999864
|
This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase. |
| >PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.3e-10 Score=101.88 Aligned_cols=65 Identities=23% Similarity=0.544 Sum_probs=56.7
Q ss_pred hcc-ccEEEecCCCCCCCCCHHHHHHHHhcCCC-CEEEecCC-ChHhHHHhh-c-CCEEEEeceEeecCe
Q psy9039 184 FFL-SDGLIITGNATGDPADVSQLMSVKNAVDL-PILIGSGV-TSDNVEHYM-T-ADALIIGSHFKQGGR 248 (251)
Q Consensus 184 ~~~-~D~v~VTG~~~g~~~~~~~l~~vr~~~~~-PV~vG~GI-~~~~v~~~~-~-ADGvIVGS~~~~~g~ 248 (251)
++| .+...-.|+.++.+.+.+.++++|+.++. |+++|||| +++++++++ . ||++||||+|++|+.
T Consensus 152 ~~g~~~vYle~gs~~g~~~~~e~I~~v~~~~~~~pvivGGGIrs~e~a~~~l~~GAD~VVVGSai~~d~~ 221 (232)
T PRK04169 152 YLGMPIVYLEYGGGAGDPVPPEMVKAVKKALDITPLIYGGGIRSPEQARELMAAGADTIVVGNIIEEDPK 221 (232)
T ss_pred HcCCCeEEEECCCCCCCCCCHHHHHHHHHhcCCCcEEEECCCCCHHHHHHHHHhCCCEEEEChHHhhCHH
Confidence 455 77778888888888889999999999987 99999999 689999966 4 999999999998864
|
|
| >cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE) | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.2e-10 Score=97.67 Aligned_cols=172 Identities=15% Similarity=0.200 Sum_probs=92.2
Q ss_pred CCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHHHHHHHHcCccceecc
Q psy9039 43 PPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQAAGLDFIRAE 122 (251)
Q Consensus 43 ~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g~~Fir~~ 122 (251)
+.+.++|+ |.|.+- .-|.+|......+ ..+++++|+.++ .|+.+.++.|++...+..+...|++.+.+.
T Consensus 19 ~~~~~~G~-~~i~l~-~~d~~~~~~~~~~-------~~~~~~i~~~~~--~~~~v~l~~~d~~~~~~~~~~~g~dgv~vh 87 (211)
T cd00429 19 KRLEEAGA-DWIHID-VMDGHFVPNLTFG-------PPVVKALRKHTD--LPLDVHLMVENPERYIEAFAKAGADIITFH 87 (211)
T ss_pred HHHHHcCC-CEEEEe-cccCCCCCccccC-------HHHHHHHHhhCC--CcEEEEeeeCCHHHHHHHHHHcCCCEEEEC
Confidence 66778999 999863 2233554332222 246677877664 588877777764333444444555554321
Q ss_pred cccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHhhccCCCCCCcccHHHHHHHhhhccccEEEecCCCCCCCC-
Q psy9039 123 SFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSSHAITADVDITETAKAASFFLSDGLIITGNATGDPA- 201 (251)
Q Consensus 123 ~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~~~~~D~v~VTG~~~g~~~- 201 (251)
+.......+..+..++.+. .+.-.+. + .++.+++.++...+.+.+.+. +....++...
T Consensus 88 ----------~~~~~~~~~~~~~~~~~~~---~~g~~~~-----~-~~~~~~~~~~~~~~d~i~~~~--~~~g~tg~~~~ 146 (211)
T cd00429 88 ----------AEATDHLHRTIQLIKELGM---KAGVALN-----P-GTPVEVLEPYLDEVDLVLVMS--VNPGFGGQKFI 146 (211)
T ss_pred ----------ccchhhHHHHHHHHHHCCC---eEEEEec-----C-CCCHHHHHHHHhhCCEEEEEE--ECCCCCCcccC
Confidence 1011112233444444443 2211111 1 122233333322222222222 2211122221
Q ss_pred --CHHHHHHHHhcC-----CCCEEEecCCChHhHHHhhc--CCEEEEeceEeec
Q psy9039 202 --DVSQLMSVKNAV-----DLPILIGSGVTSDNVEHYMT--ADALIIGSHFKQG 246 (251)
Q Consensus 202 --~~~~l~~vr~~~-----~~PV~vG~GI~~~~v~~~~~--ADGvIVGS~~~~~ 246 (251)
..+.++++|+.. ++|++++|||+++|++++.+ +||++|||+|.+.
T Consensus 147 ~~~~~~i~~~~~~~~~~~~~~pi~v~GGI~~env~~~~~~gad~iivgsai~~~ 200 (211)
T cd00429 147 PEVLEKIRKLRELIPENNLNLLIEVDGGINLETIPLLAEAGADVLVAGSALFGS 200 (211)
T ss_pred HHHHHHHHHHHHHHHhcCCCeEEEEECCCCHHHHHHHHHcCCCEEEECHHHhCC
Confidence 235677777665 48999999999999999995 9999999998764
|
This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis. |
| >cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water | Back alignment and domain information |
|---|
Probab=99.18 E-value=4.6e-10 Score=97.03 Aligned_cols=166 Identities=18% Similarity=0.184 Sum_probs=108.5
Q ss_pred CCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHHHHHHHHcCccceecc
Q psy9039 43 PPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQAAGLDFIRAE 122 (251)
Q Consensus 43 ~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g~~Fir~~ 122 (251)
+.++++|+ ++|-+...- .... ..+ +.++.+|+.++ +|+.+.-+..+ ...+..+...|++++...
T Consensus 38 ~~~~~~GA-~~l~v~~~~---~~~~--g~~-------~~~~~i~~~v~--iPi~~~~~i~~-~~~v~~~~~~Gad~v~l~ 101 (217)
T cd00331 38 KAYEKAGA-AAISVLTEP---KYFQ--GSL-------EDLRAVREAVS--LPVLRKDFIID-PYQIYEARAAGADAVLLI 101 (217)
T ss_pred HHHHHcCC-CEEEEEeCc---cccC--CCH-------HHHHHHHHhcC--CCEEECCeecC-HHHHHHHHHcCCCEEEEe
Confidence 66789999 999874332 2221 122 45666777666 79998877665 456777888888887742
Q ss_pred cccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHhhccCCCCCCcccHHHHHHHhhhccccEEEecCCC-CCCCC
Q psy9039 123 SFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSSHAITADVDITETAKAASFFLSDGLIITGNA-TGDPA 201 (251)
Q Consensus 123 ~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~~~~~D~v~VTG~~-~g~~~ 201 (251)
. ..+-.....++.++...++.+-+..+ + +.++ ++.+...++|.+++|+.. +...+
T Consensus 102 ----~----~~~~~~~~~~~~~~~~~~g~~~~v~v---------~------~~~e-~~~~~~~g~~~i~~t~~~~~~~~~ 157 (217)
T cd00331 102 ----V----AALDDEQLKELYELARELGMEVLVEV---------H------DEEE-LERALALGAKIIGINNRDLKTFEV 157 (217)
T ss_pred ----e----ccCCHHHHHHHHHHHHHcCCeEEEEE---------C------CHHH-HHHHHHcCCCEEEEeCCCccccCc
Confidence 1 00001223445555555554221111 1 2222 344444689999999754 22345
Q ss_pred CHHHHHHHHhc--CCCCEEEecCC-ChHhHHHhhc--CCEEEEeceEeecCe
Q psy9039 202 DVSQLMSVKNA--VDLPILIGSGV-TSDNVEHYMT--ADALIIGSHFKQGGR 248 (251)
Q Consensus 202 ~~~~l~~vr~~--~~~PV~vG~GI-~~~~v~~~~~--ADGvIVGS~~~~~g~ 248 (251)
+.+.+.++++. .++|++++||| +++++.+++. |||++|||+|.+..+
T Consensus 158 ~~~~~~~l~~~~~~~~pvia~gGI~s~edi~~~~~~Ga~gvivGsai~~~~~ 209 (217)
T cd00331 158 DLNTTERLAPLIPKDVILVSESGISTPEDVKRLAEAGADAVLIGESLMRAPD 209 (217)
T ss_pred CHHHHHHHHHhCCCCCEEEEEcCCCCHHHHHHHHHcCCCEEEECHHHcCCCC
Confidence 67888888887 47899999999 6899999997 999999999987654
|
IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis. |
| >PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1 | Back alignment and domain information |
|---|
Probab=99.17 E-value=3e-11 Score=111.10 Aligned_cols=151 Identities=19% Similarity=0.304 Sum_probs=86.6
Q ss_pred HHHHHHHHHHHHhCCCCccEEEEEeeCChHHH--------------HHHHHHcCccceecccccccccCCCceeec--Cc
Q psy9039 76 ANMTRLCAEIRKVLPPSVPVGVQILSGCNKAA--------------LATAQAAGLDFIRAESFVFGHMADEGLMNA--QA 139 (251)
Q Consensus 76 aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~--------------~~ia~a~g~~Fir~~~~~~~~~~~~Gli~~--da 139 (251)
+.+.+.++++|+.++ .|+|+|++....... ..++...+..|...-..+ .....+-++.. ..
T Consensus 48 ~~l~~~i~~~~~~t~--~pfgvnl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~G~p 124 (330)
T PF03060_consen 48 EQLREEIRKIRALTD--KPFGVNLFLPPPDPADEEDAWPKELGNAVLELCIEEGVPFEEQLDVA-LEAKPDVVSFGFGLP 124 (330)
T ss_dssp HHHHHHHHHHHHH-S--S-EEEEEETTSTTHHHH-HHHHHHTHHHHHHHHHHTT-SHHHHHHHH-HHS--SEEEEESSSC
T ss_pred HHHHHHHHHHHhhcc--ccccccccccCcccchhhhhhhhhhHHHHHHHHHHhCcccccccccc-cccceEEEEeecccc
Confidence 668889999999998 699999998753111 122222332311100000 00112222221 12
Q ss_pred -chhHHHHHhcCCCcchhhhhhHhhccCCCCCCcccHHHHHHHhhhccccEEEecCCCCCCC-----C-CHHHHHHHHhc
Q psy9039 140 -GPLLRYRKQIGADNVLVFTDIKKKHSSHAITADVDITETAKAASFFLSDGLIITGNATGDP-----A-DVSQLMSVKNA 212 (251)
Q Consensus 140 -~e~~~~r~~l~~~~i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~~~~~D~v~VTG~~~g~~-----~-~~~~l~~vr~~ 212 (251)
.++.+..+..| ++++. ..+..+.|+.+...|+|+++++|...|.. . ...++.++++.
T Consensus 125 ~~~~i~~l~~~g---i~v~~-------------~v~s~~~A~~a~~~G~D~iv~qG~eAGGH~g~~~~~~~~L~~~v~~~ 188 (330)
T PF03060_consen 125 PPEVIERLHAAG---IKVIP-------------QVTSVREARKAAKAGADAIVAQGPEAGGHRGFEVGSTFSLLPQVRDA 188 (330)
T ss_dssp -HHHHHHHHHTT----EEEE-------------EESSHHHHHHHHHTT-SEEEEE-TTSSEE---SSG-HHHHHHHHHHH
T ss_pred hHHHHHHHHHcC---Ccccc-------------ccCCHHHHHHhhhcCCCEEEEeccccCCCCCccccceeeHHHHHhhh
Confidence 33444444443 45542 12334456666667999999999866542 1 24778899999
Q ss_pred CCCCEEEecCC-ChHhHHHhhc--CCEEEEeceEee
Q psy9039 213 VDLPILIGSGV-TSDNVEHYMT--ADALIIGSHFKQ 245 (251)
Q Consensus 213 ~~~PV~vG~GI-~~~~v~~~~~--ADGvIVGS~~~~ 245 (251)
+++||+++||| +.+.++.++. ||||.+||+|.-
T Consensus 189 ~~iPViaAGGI~dg~~iaaal~lGA~gV~~GTrFl~ 224 (330)
T PF03060_consen 189 VDIPVIAAGGIADGRGIAAALALGADGVQMGTRFLA 224 (330)
T ss_dssp -SS-EEEESS--SHHHHHHHHHCT-SEEEESHHHHT
T ss_pred cCCcEEEecCcCCHHHHHHHHHcCCCEeecCCeEEe
Confidence 99999999999 7899998886 999999999863
|
13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A. |
| >TIGR01163 rpe ribulose-phosphate 3-epimerase | Back alignment and domain information |
|---|
Probab=99.12 E-value=6.7e-10 Score=94.87 Aligned_cols=169 Identities=21% Similarity=0.284 Sum_probs=88.6
Q ss_pred CCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHHHHHHHHcCccceecc
Q psy9039 43 PPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQAAGLDFIRAE 122 (251)
Q Consensus 43 ~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g~~Fir~~ 122 (251)
+++.++|+ |.|++- ..|-||......+ -.+++++|+.++ .|+-+-++.++....+..+...|++.+...
T Consensus 18 ~~~~~~g~-d~i~~~-~~Dg~~~~~~~~~-------~~~v~~i~~~~~--~~v~v~lm~~~~~~~~~~~~~~gadgv~vh 86 (210)
T TIGR01163 18 KAVEEAGA-DWIHVD-VMDGHFVPNLTFG-------PPVLEALRKYTD--LPIDVHLMVENPDRYIEDFAEAGADIITVH 86 (210)
T ss_pred HHHHHcCC-CEEEEc-CCCCCCCCCcccC-------HHHHHHHHhcCC--CcEEEEeeeCCHHHHHHHHHHcCCCEEEEc
Confidence 88899999 999863 2233443332222 245667776655 575443444443333444444444443321
Q ss_pred cccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHhhccCCCCCCcccHHHHHHHhhhccccEEEecC---CCCCC
Q psy9039 123 SFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSSHAITADVDITETAKAASFFLSDGLIITG---NATGD 199 (251)
Q Consensus 123 ~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~~~~~D~v~VTG---~~~g~ 199 (251)
+....+..+..+..++++...+-.+ . ..++.+++.++. .++|.+.+-+ ..+|.
T Consensus 87 ----------~~~~~~~~~~~~~~~~~g~~~~~~~---~------~~t~~e~~~~~~-----~~~d~i~~~~~~~g~tg~ 142 (210)
T TIGR01163 87 ----------PEASEHIHRLLQLIKDLGAKAGIVL---N------PATPLEFLEYVL-----PDVDLVLLMSVNPGFGGQ 142 (210)
T ss_pred ----------cCCchhHHHHHHHHHHcCCcEEEEE---C------CCCCHHHHHHHH-----hhCCEEEEEEEcCCCCcc
Confidence 0001112233344445554211111 0 112223333332 2355543311 11222
Q ss_pred ---CCCHHHHHHHHhcCC-----CCEEEecCCChHhHHHhhc--CCEEEEeceEeec
Q psy9039 200 ---PADVSQLMSVKNAVD-----LPILIGSGVTSDNVEHYMT--ADALIIGSHFKQG 246 (251)
Q Consensus 200 ---~~~~~~l~~vr~~~~-----~PV~vG~GI~~~~v~~~~~--ADGvIVGS~~~~~ 246 (251)
....+.++++|+..+ +|++++||||++|++++++ ||+++|||+|...
T Consensus 143 ~~~~~~~~~i~~i~~~~~~~~~~~~i~v~GGI~~env~~l~~~gad~iivgsai~~~ 199 (210)
T TIGR01163 143 KFIPDTLEKIREVRKMIDENGLSILIEVDGGVNDDNARELAEAGADILVAGSAIFGA 199 (210)
T ss_pred cccHHHHHHHHHHHHHHHhcCCCceEEEECCcCHHHHHHHHHcCCCEEEEChHHhCC
Confidence 122356667776543 7999999999999999885 9999999999754
|
This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants. |
| >PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.4e-09 Score=94.23 Aligned_cols=173 Identities=20% Similarity=0.255 Sum_probs=108.0
Q ss_pred CCCCCCCcc-hHHHHHHHHHhhCCCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEE
Q psy9039 21 AESGPEITA-NMTRLCAEIRKVLPPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQI 99 (251)
Q Consensus 21 ~pG~P~~~~-~~~~i~~~a~~~a~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~ 99 (251)
.||+|-++. +...+. +++.++|+ .++.+- + ...++++|+.++ +|+..++
T Consensus 14 ~~~~~~~~~~~~~~~a-------~a~~~~G~-~~~~~~-------------~-------~~~i~~i~~~~~--~Pil~~~ 63 (221)
T PRK01130 14 LPGEPLHSPEIMAAMA-------LAAVQGGA-VGIRAN-------------G-------VEDIKAIRAVVD--VPIIGII 63 (221)
T ss_pred CCCCCCCCHHHHHHHH-------HHHHHCCC-eEEEcC-------------C-------HHHHHHHHHhCC--CCEEEEE
Confidence 479998874 444442 67788999 888641 1 246678888877 7998776
Q ss_pred e---eCCh------HHHHHHHHHcCccceecccccccccCCCceeec---CcchhHHHHHhcCCCcchhhhhhHhhccCC
Q psy9039 100 L---SGCN------KAALATAQAAGLDFIRAESFVFGHMADEGLMNA---QAGPLLRYRKQIGADNVLVFTDIKKKHSSH 167 (251)
Q Consensus 100 ~---~N~~------~~~~~ia~a~g~~Fir~~~~~~~~~~~~Gli~~---da~e~~~~r~~l~~~~i~i~a~v~~k~~~~ 167 (251)
+ +|.+ ......+...|++|+-.. .... -.| ...++.+..++. ..+.++.++
T Consensus 64 ~~d~~~~~~~~~~~~~~v~~a~~aGad~I~~d----~~~~----~~p~~~~~~~~i~~~~~~--~~i~vi~~v------- 126 (221)
T PRK01130 64 KRDYPDSEVYITPTLKEVDALAAAGADIIALD----ATLR----PRPDGETLAELVKRIKEY--PGQLLMADC------- 126 (221)
T ss_pred ecCCCCCCceECCCHHHHHHHHHcCCCEEEEe----CCCC----CCCCCCCHHHHHHHHHhC--CCCeEEEeC-------
Confidence 6 3311 224566666777776531 0000 001 122344444442 344554211
Q ss_pred CCCCcccHHHHHHHhhhccccEEEecC-----CCC-CCCCCHHHHHHHHhcCCCCEEEecCC-ChHhHHHhhc--CCEEE
Q psy9039 168 AITADVDITETAKAASFFLSDGLIITG-----NAT-GDPADVSQLMSVKNAVDLPILIGSGV-TSDNVEHYMT--ADALI 238 (251)
Q Consensus 168 ~~~~~~~i~~~a~~a~~~~~D~v~VTG-----~~~-g~~~~~~~l~~vr~~~~~PV~vG~GI-~~~~v~~~~~--ADGvI 238 (251)
.+.++ ++.+...|+|.++++. ... ......+.++++++.+++||+++||| +++++.+++. |||++
T Consensus 127 -----~t~ee-~~~a~~~G~d~i~~~~~g~t~~~~~~~~~~~~~i~~i~~~~~iPvia~GGI~t~~~~~~~l~~GadgV~ 200 (221)
T PRK01130 127 -----STLEE-GLAAQKLGFDFIGTTLSGYTEETKKPEEPDFALLKELLKAVGCPVIAEGRINTPEQAKKALELGAHAVV 200 (221)
T ss_pred -----CCHHH-HHHHHHcCCCEEEcCCceeecCCCCCCCcCHHHHHHHHHhCCCCEEEECCCCCHHHHHHHHHCCCCEEE
Confidence 12233 3555556899887642 111 12234688999999999999999999 7999999986 99999
Q ss_pred EeceEeec
Q psy9039 239 IGSHFKQG 246 (251)
Q Consensus 239 VGS~~~~~ 246 (251)
+||+|.+.
T Consensus 201 iGsai~~~ 208 (221)
T PRK01130 201 VGGAITRP 208 (221)
T ss_pred EchHhcCC
Confidence 99999763
|
|
| >cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS) | Back alignment and domain information |
|---|
Probab=99.07 E-value=2.7e-09 Score=90.72 Aligned_cols=168 Identities=18% Similarity=0.205 Sum_probs=106.3
Q ss_pred CCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChH-HHHHHHHHcCccceec
Q psy9039 43 PPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNK-AALATAQAAGLDFIRA 121 (251)
Q Consensus 43 ~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~-~~~~ia~a~g~~Fir~ 121 (251)
++|.++ + +.+++ |.||..+ .| ...++++|+..++ .|+.+.+..+++. .....+...|++|+-.
T Consensus 20 ~~l~~~-i-~~iei----g~~~~~~--~g-------~~~i~~i~~~~~~-~~i~~~~~v~~~~~~~~~~~~~aGad~i~~ 83 (202)
T cd04726 20 KKVPDG-V-DIIEA----GTPLIKS--EG-------MEAVRALREAFPD-KIIVADLKTADAGALEAEMAFKAGADIVTV 83 (202)
T ss_pred HHhhhc-C-CEEEc----CCHHHHH--hC-------HHHHHHHHHHCCC-CEEEEEEEeccccHHHHHHHHhcCCCEEEE
Confidence 778888 9 99964 8888543 33 3466777776443 6999987777632 2234456677888775
Q ss_pred ccccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHhhccCCCCCCcccHHHHHHHhhhccccEEEec-CC---CC
Q psy9039 122 ESFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSSHAITADVDITETAKAASFFLSDGLIIT-GN---AT 197 (251)
Q Consensus 122 ~~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~~~~~D~v~VT-G~---~~ 197 (251)
..... .....++.++.++.+. ++..++ + ++ .+..+..+ +...++|.+.+. +. ..
T Consensus 84 h~~~~---------~~~~~~~i~~~~~~g~---~~~v~~------~--~~-~t~~e~~~-~~~~~~d~v~~~~~~~~~~~ 141 (202)
T cd04726 84 LGAAP---------LSTIKKAVKAAKKYGK---EVQVDL------I--GV-EDPEKRAK-LLKLGVDIVILHRGIDAQAA 141 (202)
T ss_pred EeeCC---------HHHHHHHHHHHHHcCC---eEEEEE------e--CC-CCHHHHHH-HHHCCCCEEEEcCccccccc
Confidence 31110 0013456666676664 222100 0 11 12233322 334588988762 32 22
Q ss_pred CCCCCHHHHHHHHhcCCCCEEEecCCChHhHHHhhc--CCEEEEeceEeecCe
Q psy9039 198 GDPADVSQLMSVKNAVDLPILIGSGVTSDNVEHYMT--ADALIIGSHFKQGGR 248 (251)
Q Consensus 198 g~~~~~~~l~~vr~~~~~PV~vG~GI~~~~v~~~~~--ADGvIVGS~~~~~g~ 248 (251)
+.....+.++++++..++|+++.|||+++|+.++++ ||++++||+|.+..+
T Consensus 142 ~~~~~~~~i~~~~~~~~~~i~~~GGI~~~~i~~~~~~Gad~vvvGsai~~~~d 194 (202)
T cd04726 142 GGWWPEDDLKKVKKLLGVKVAVAGGITPDTLPEFKKAGADIVIVGRAITGAAD 194 (202)
T ss_pred CCCCCHHHHHHHHhhcCCCEEEECCcCHHHHHHHHhcCCCEEEEeehhcCCCC
Confidence 223456888888887789999999999999999996 999999999986543
|
KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates. |
| >PRK05581 ribulose-phosphate 3-epimerase; Validated | Back alignment and domain information |
|---|
Probab=99.07 E-value=4.8e-10 Score=96.63 Aligned_cols=175 Identities=18% Similarity=0.211 Sum_probs=93.0
Q ss_pred CCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHHHHHHHHcCccceecc
Q psy9039 43 PPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQAAGLDFIRAE 122 (251)
Q Consensus 43 ~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g~~Fir~~ 122 (251)
+.+.++|+ |.|.+- .-|-+|...... ....++++++.++ .|+.+.++.|++...+..+...|++.+.+.
T Consensus 23 ~~~~~~G~-~~i~l~-~~d~~~~~~~~~-------~~~~~~~i~~~~~--~~~~v~l~v~d~~~~i~~~~~~g~d~v~vh 91 (220)
T PRK05581 23 KAVEAAGA-DWIHVD-VMDGHFVPNLTI-------GPPVVEAIRKVTK--LPLDVHLMVENPDRYVPDFAKAGADIITFH 91 (220)
T ss_pred HHHHHcCC-CEEEEe-CccCCcCCCcCc-------CHHHHHHHHhcCC--CcEEEEeeeCCHHHHHHHHHHcCCCEEEEe
Confidence 78889999 999862 112234221111 2356678887666 477777777875444555555555554432
Q ss_pred cccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHhhccCCCCCCcccHHHHHHHhhhccccEE--EecCCCCCCC
Q psy9039 123 SFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSSHAITADVDITETAKAASFFLSDGL--IITGNATGDP 200 (251)
Q Consensus 123 ~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~~~~~D~v--~VTG~~~g~~ 200 (251)
+.......+..+..+..+. .+.-.+. + .+..++++++...+.+.+.+.+ +.||. +-..
T Consensus 92 ----------~~~~~~~~~~~~~~~~~~~---~~g~~~~-----~-~t~~e~~~~~~~~~d~i~~~~~~~g~tg~-~~~~ 151 (220)
T PRK05581 92 ----------VEASEHIHRLLQLIKSAGI---KAGLVLN-----P-ATPLEPLEDVLDLLDLVLLMSVNPGFGGQ-KFIP 151 (220)
T ss_pred ----------eccchhHHHHHHHHHHcCC---EEEEEEC-----C-CCCHHHHHHHHhhCCEEEEEEECCCCCcc-cccH
Confidence 1111112223333344443 2210010 1 1233344443333333233332 22332 1111
Q ss_pred CCHHHHHHHHhcCC-----CCEEEecCCChHhHHHhhc--CCEEEEeceEeecCe
Q psy9039 201 ADVSQLMSVKNAVD-----LPILIGSGVTSDNVEHYMT--ADALIIGSHFKQGGR 248 (251)
Q Consensus 201 ~~~~~l~~vr~~~~-----~PV~vG~GI~~~~v~~~~~--ADGvIVGS~~~~~g~ 248 (251)
...+.++++|+..+ .+|+++||||++|++++.+ +|+++|||+|.++-+
T Consensus 152 ~~~~~i~~~~~~~~~~~~~~~i~v~GGI~~~nv~~l~~~GaD~vvvgSai~~~~d 206 (220)
T PRK05581 152 EVLEKIRELRKLIDERGLDILIEVDGGINADNIKECAEAGADVFVAGSAVFGAPD 206 (220)
T ss_pred HHHHHHHHHHHHHHhcCCCceEEEECCCCHHHHHHHHHcCCCEEEEChhhhCCCC
Confidence 12356666666543 3477999999999999984 999999999987543
|
|
| >cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS) | Back alignment and domain information |
|---|
Probab=99.01 E-value=2e-09 Score=98.35 Aligned_cols=139 Identities=18% Similarity=0.167 Sum_probs=90.9
Q ss_pred HHHHHHHHHHHHHh-CCCCccEEEEEee---CC-hHHHHHHHHHcCccceecccccccccCCCceeecCcchhHHHHHhc
Q psy9039 75 TANMTRLCAEIRKV-LPPSVPVGVQILS---GC-NKAALATAQAAGLDFIRAESFVFGHMADEGLMNAQAGPLLRYRKQI 149 (251)
Q Consensus 75 ~aa~~~~i~~vr~~-~~~~~P~Gvn~~~---N~-~~~~~~ia~a~g~~Fir~~~~~~~~~~~~Gli~~da~e~~~~r~~l 149 (251)
...+.+.++++|+. ++ .|||||++. |+ ....+.++...+.+++-.. + | .| .++ +..+.
T Consensus 39 ~e~l~~~i~~~~~l~td--kPfGVnl~~~~~~~~~~~~l~vi~e~~v~~V~~~---~------G--~P--~~~-~~lk~- 101 (320)
T cd04743 39 GEQVKALLEETAELLGD--KPWGVGILGFVDTELRAAQLAVVRAIKPTFALIA---G------G--RP--DQA-RALEA- 101 (320)
T ss_pred HHHHHHHHHHHHHhccC--CCeEEEEeccCCCcchHHHHHHHHhcCCcEEEEc---C------C--Ch--HHH-HHHHH-
Confidence 35578888999986 56 699999954 21 1356777777777776532 1 1 11 222 22223
Q ss_pred CCCcchhhhhhHhhccCCCCCCcccHHHHHHHhhhccccEEEecCCCCCCCC----CHHHHHHHHhc----------CCC
Q psy9039 150 GADNVLVFTDIKKKHSSHAITADVDITETAKAASFFLSDGLIITGNATGDPA----DVSQLMSVKNA----------VDL 215 (251)
Q Consensus 150 ~~~~i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~~~~~D~v~VTG~~~g~~~----~~~~l~~vr~~----------~~~ 215 (251)
..++++. ..+....++.+...|+|+++++|...|... +..++.++.+. .++
T Consensus 102 --~Gi~v~~-------------~v~s~~~A~~a~~~GaD~vVaqG~EAGGH~G~~~t~~L~~~v~~~l~~~~~~~~~~~i 166 (320)
T cd04743 102 --IGISTYL-------------HVPSPGLLKQFLENGARKFIFEGRECGGHVGPRSSFVLWESAIDALLAANGPDKAGKI 166 (320)
T ss_pred --CCCEEEE-------------EeCCHHHHHHHHHcCCCEEEEecCcCcCCCCCCCchhhHHHHHHHHHHhhcccccCCc
Confidence 3556652 122234467777789999999998776542 33444444332 279
Q ss_pred CEEEecCC-ChHhHHHhhc--C--------CEEEEeceEee
Q psy9039 216 PILIGSGV-TSDNVEHYMT--A--------DALIIGSHFKQ 245 (251)
Q Consensus 216 PV~vG~GI-~~~~v~~~~~--A--------DGvIVGS~~~~ 245 (251)
||++.||| +...++.++. | +||.+||+|.-
T Consensus 167 PViAAGGI~dgr~~aaalaLGA~~~~~Ga~~GV~mGTrFl~ 207 (320)
T cd04743 167 HLLFAGGIHDERSAAMVSALAAPLAERGAKVGVLMGTAYLF 207 (320)
T ss_pred cEEEEcCCCCHHHHHHHHHcCCcccccccccEEEEccHHhc
Confidence 99999999 7888777775 7 89999999964
|
NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. |
| >TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase | Back alignment and domain information |
|---|
Probab=98.97 E-value=9.1e-09 Score=89.54 Aligned_cols=182 Identities=17% Similarity=0.168 Sum_probs=115.7
Q ss_pred CCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHHHHHHHHcCccceecc
Q psy9039 43 PPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQAAGLDFIRAE 122 (251)
Q Consensus 43 ~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g~~Fir~~ 122 (251)
+.+.+.|+ |.+.|-+..+.--.. + .....++++++.++ .|+.+..-... .+.+..+...|++.+-..
T Consensus 35 ~~~~~~g~-~~l~v~dl~~~~~g~-----~----~~~~~i~~i~~~~~--~pi~~ggGI~~-~ed~~~~~~~Ga~~vvlg 101 (230)
T TIGR00007 35 KKWEEEGA-ERIHVVDLDGAKEGG-----P----VNLPVIKKIVRETG--VPVQVGGGIRS-LEDVEKLLDLGVDRVIIG 101 (230)
T ss_pred HHHHHcCC-CEEEEEeCCccccCC-----C----CcHHHHHHHHHhcC--CCEEEeCCcCC-HHHHHHHHHcCCCEEEEC
Confidence 56788999 999874443321011 1 13456778888777 79988876665 566666666777765432
Q ss_pred cccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHhh----ccCCCCCCcccHHHHHHHhhhccccEEEecCC---
Q psy9039 123 SFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKK----HSSHAITADVDITETAKAASFFLSDGLIITGN--- 195 (251)
Q Consensus 123 ~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~k----~~~~~~~~~~~i~~~a~~a~~~~~D~v~VTG~--- 195 (251)
.. ...+...+.+..++++.+.+.+--|+... ++..- ..+.+..+.++.....|+|.+++|..
T Consensus 102 ----s~------~l~d~~~~~~~~~~~g~~~i~~sid~~~~~v~~~g~~~-~~~~~~~~~~~~~~~~g~~~ii~~~~~~~ 170 (230)
T TIGR00007 102 ----TA------AVENPDLVKELLKEYGPERIVVSLDARGGEVAVKGWLE-KSEVSLEELAKRLEELGLEGIIYTDISRD 170 (230)
T ss_pred ----hH------HhhCHHHHHHHHHHhCCCcEEEEEEEECCEEEEcCCcc-cCCCCHHHHHHHHHhCCCCEEEEEeecCC
Confidence 11 11234556677777765433221111100 12110 11234455556666679999987753
Q ss_pred CCCCCCCHHHHHHHHhcCCCCEEEecCC-ChHhHHHhhc--CCEEEEeceEeecCe
Q psy9039 196 ATGDPADVSQLMSVKNAVDLPILIGSGV-TSDNVEHYMT--ADALIIGSHFKQGGR 248 (251)
Q Consensus 196 ~~g~~~~~~~l~~vr~~~~~PV~vG~GI-~~~~v~~~~~--ADGvIVGS~~~~~g~ 248 (251)
.+....+.+.++++++.+++|++++||| +.+++.+++. |||+++||+|.++..
T Consensus 171 g~~~g~~~~~i~~i~~~~~ipvia~GGi~~~~di~~~~~~Gadgv~ig~a~~~~~~ 226 (230)
T TIGR00007 171 GTLSGPNFELTKELVKAVNVPVIASGGVSSIDDLIALKKLGVYGVIVGKALYEGKI 226 (230)
T ss_pred CCcCCCCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHCCCCEEEEeHHHHcCCC
Confidence 2223456889999999999999999999 7899999886 999999999987643
|
Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317). |
| >cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.4e-08 Score=88.36 Aligned_cols=143 Identities=22% Similarity=0.381 Sum_probs=90.9
Q ss_pred HHHHHHHHHHHHHHhCCCCccEEEEEeeCC---h-HHHHHHHHHcCccceecccccccccCCCceeecCcchhHHHHHhc
Q psy9039 74 ITANMTRLCAEIRKVLPPSVPVGVQILSGC---N-KAALATAQAAGLDFIRAESFVFGHMADEGLMNAQAGPLLRYRKQI 149 (251)
Q Consensus 74 i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~---~-~~~~~ia~a~g~~Fir~~~~~~~~~~~~Gli~~da~e~~~~r~~l 149 (251)
..+...++++++++..+ .|+++|++.|+ . ...+..+...|++++..+. + ...++.+..++.
T Consensus 37 ~~~~~~~~~~~i~~~~~--~~~~v~~i~~~~~~~~~~~~~~~~~~g~d~v~l~~---------~----~~~~~~~~~~~~ 101 (236)
T cd04730 37 TPEALRAEIRKIRALTD--KPFGVNLLVPSSNPDFEALLEVALEEGVPVVSFSF---------G----PPAEVVERLKAA 101 (236)
T ss_pred CHHHHHHHHHHHHHhcC--CCeEEeEecCCCCcCHHHHHHHHHhCCCCEEEEcC---------C----CCHHHHHHHHHc
Confidence 45556678888887765 59999999985 1 2235555566667766421 1 123344444443
Q ss_pred CCCcchhhhhhHhhccCCCCCCcccHHHHHHHhhhccccEEEecCCCCCCC------CCHHHHHHHHhcCCCCEEEecCC
Q psy9039 150 GADNVLVFTDIKKKHSSHAITADVDITETAKAASFFLSDGLIITGNATGDP------ADVSQLMSVKNAVDLPILIGSGV 223 (251)
Q Consensus 150 ~~~~i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~~~~~D~v~VTG~~~g~~------~~~~~l~~vr~~~~~PV~vG~GI 223 (251)
+ +.++.. .+ +. +.++.+...++|++.+.|..++.. ...+.++++|+.+++||+++|||
T Consensus 102 ~---i~~i~~------v~------~~-~~~~~~~~~gad~i~~~~~~~~G~~~~~~~~~~~~i~~i~~~~~~Pvi~~GGI 165 (236)
T cd04730 102 G---IKVIPT------VT------SV-EEARKAEAAGADALVAQGAEAGGHRGTFDIGTFALVPEVRDAVDIPVIAAGGI 165 (236)
T ss_pred C---CEEEEe------CC------CH-HHHHHHHHcCCCEEEEeCcCCCCCCCccccCHHHHHHHHHHHhCCCEEEECCC
Confidence 3 233211 11 11 223334335788887755432221 23578999999889999999999
Q ss_pred C-hHhHHHhhc--CCEEEEeceEeecC
Q psy9039 224 T-SDNVEHYMT--ADALIIGSHFKQGG 247 (251)
Q Consensus 224 ~-~~~v~~~~~--ADGvIVGS~~~~~g 247 (251)
+ ++|+.+++. |||++|||+|.+.-
T Consensus 166 ~~~~~v~~~l~~GadgV~vgS~l~~~~ 192 (236)
T cd04730 166 ADGRGIAAALALGADGVQMGTRFLATE 192 (236)
T ss_pred CCHHHHHHHHHcCCcEEEEchhhhcCc
Confidence 5 699999886 99999999998653
|
NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. |
| >TIGR02814 pfaD_fam PfaD family protein | Back alignment and domain information |
|---|
Probab=98.94 E-value=2e-08 Score=95.43 Aligned_cols=158 Identities=18% Similarity=0.266 Sum_probs=88.8
Q ss_pred HHHHHHHHHHHHHHHhCCCCcc-EEEEEeeCChH-----HHHHHHHHcCccceecccccccccCCCceeecCcchhHHHH
Q psy9039 73 EITANMTRLCAEIRKVLPPSVP-VGVQILSGCNK-----AALATAQAAGLDFIRAESFVFGHMADEGLMNAQAGPLLRYR 146 (251)
Q Consensus 73 ~i~aa~~~~i~~vr~~~~~~~P-~Gvn~~~N~~~-----~~~~ia~a~g~~Fir~~~~~~~~~~~~Gli~~da~e~~~~r 146 (251)
.+.+.+...|+++|+.++.. | ||+|++.++.. ..+.+....+.+++....+.+. .|. +.+||
T Consensus 53 l~~e~l~~~I~~ir~~~~~~-p~fGVNL~~~~~~~~~e~~~v~l~l~~~V~~veasa~~~~--------~p~---~v~~r 120 (444)
T TIGR02814 53 LPLEEVEQAIHRIQQALPGG-PAYGVNLIHSPSDPALEWGLVDLLLRHGVRIVEASAFMQL--------TPA---LVRYR 120 (444)
T ss_pred CCHHHHHHHHHHHHHhcCCC-CceEEEecccCCCcccHHHHHHHHHHcCCCEEEeccccCC--------Ccc---hhhhh
Confidence 34566888999999987742 7 99999986521 2345555667777664322110 111 12222
Q ss_pred Hh---cCC-----Ccchhhhhh-Hhh----ccCCCCCCcc----------cHHHHHHHhhhcc-ccEEEecCCCCCCC--
Q psy9039 147 KQ---IGA-----DNVLVFTDI-KKK----HSSHAITADV----------DITETAKAASFFL-SDGLIITGNATGDP-- 200 (251)
Q Consensus 147 ~~---l~~-----~~i~i~a~v-~~k----~~~~~~~~~~----------~i~~~a~~a~~~~-~D~v~VTG~~~g~~-- 200 (251)
.. .+. ...++++.| .++ +-.|. +.. -..+.|+.++..+ +|.+++. ...|..
T Consensus 121 ~~G~~~~~~g~~~~~~~ViakVsr~~vAs~f~~p~--p~~~v~~L~~~G~it~eEA~~a~~~g~aD~Ivve-~EAGGHtg 197 (444)
T TIGR02814 121 AKGLHRDADGRVVIRNRLIAKVSRPEVAEAFMSPA--PAHILQKLLAEGRITREEAELARRVPVADDICVE-ADSGGHTD 197 (444)
T ss_pred hccccccccccccccceEEEecCCHHHHHHhcCCC--cHHHHHHHHHcCCCCHHHHHHHHhCCCCcEEEEe-ccCCCCCC
Confidence 21 000 011233221 111 00010 000 0133445555555 6999886 444433
Q ss_pred --CCHHHHHHH---HhcC--------CCCEEEecCC-ChHhHHHhhc--CCEEEEeceEee
Q psy9039 201 --ADVSQLMSV---KNAV--------DLPILIGSGV-TSDNVEHYMT--ADALIIGSHFKQ 245 (251)
Q Consensus 201 --~~~~~l~~v---r~~~--------~~PV~vG~GI-~~~~v~~~~~--ADGvIVGS~~~~ 245 (251)
+...++..+ |+.+ ++||+++||| |++.++.++. ||||.+||.|.-
T Consensus 198 ~~~~~~Llp~i~~lrd~v~~~~~y~~~VpViAAGGI~t~~~vaAAlaLGAdgV~~GT~fla 258 (444)
T TIGR02814 198 NRPLVVLLPAIIRLRDTLMRRYGYRKPIRVGAAGGIGTPEAAAAAFMLGADFIVTGSVNQC 258 (444)
T ss_pred CCcHHHHHHHHHHHHHHHhhcccCCCCceEEEeCCCCCHHHHHHHHHcCCcEEEeccHHHh
Confidence 234555544 4444 6899999999 8999999886 999999999853
|
The protein PfaD is part of four gene locus, similar to polyketide biosynthesis systems, responsible for omega-3 polyunsaturated fatty acid biosynthesis in several high pressure and/or cold-adapted bacteria. Several other members of the seed alignment for this model are found in loci presumed to act in polyketide biosyntheses per se. |
| >cd04742 NPD_FabD 2-Nitropropane dioxygenase (NPD)-like domain, associated with the (acyl-carrier-protein) S-malonyltransferase FabD | Back alignment and domain information |
|---|
Probab=98.94 E-value=2.3e-08 Score=94.46 Aligned_cols=153 Identities=16% Similarity=0.286 Sum_probs=88.2
Q ss_pred HHHHHHHHHHHHHHHhCC-CCccEEEEEeeCCh-----HHHHHHHHHcCccceecccccccccCCCceeecCcchhHHHH
Q psy9039 73 EITANMTRLCAEIRKVLP-PSVPVGVQILSGCN-----KAALATAQAAGLDFIRAESFVFGHMADEGLMNAQAGPLLRYR 146 (251)
Q Consensus 73 ~i~aa~~~~i~~vr~~~~-~~~P~Gvn~~~N~~-----~~~~~ia~a~g~~Fir~~~~~~~~~~~~Gli~~da~e~~~~r 146 (251)
...+.+...|+++|+... + .|||+|++.++. ...+.+....|.+++....|.+ +.|. +.++|
T Consensus 48 l~~e~l~~~I~~ir~~lt~~-~PfGVNL~~~~~~~~~e~~~v~l~le~gV~~ve~sa~~~--------~~p~---~~~~r 115 (418)
T cd04742 48 LPLDEVEQAIERIQAALGNG-EPYGVNLIHSPDEPELEEGLVDLFLRHGVRVVEASAFMQ--------LTPA---LVRYR 115 (418)
T ss_pred CCHHHHHHHHHHHHHhccCC-CCeEEeeecCCCCchhHHHHHHHHHHcCCCEEEeccccC--------CCcc---hhhHH
Confidence 345568889999998633 3 599999998642 2335666666667665432211 1111 22333
Q ss_pred Hh---cCCC-----cchhhhhhH-h-------------------hccCCCCCCcccHHHHHHHhhhcc-ccEEEecCCCC
Q psy9039 147 KQ---IGAD-----NVLVFTDIK-K-------------------KHSSHAITADVDITETAKAASFFL-SDGLIITGNAT 197 (251)
Q Consensus 147 ~~---l~~~-----~i~i~a~v~-~-------------------k~~~~~~~~~~~i~~~a~~a~~~~-~D~v~VTG~~~ 197 (251)
.. .+.. ..++++.|. + +.|+ .+ .+.|+.+...+ +|.++++ ..+
T Consensus 116 ~~G~~~~~~g~~~~~~~ViakVsr~evAs~~f~ppp~~~v~~L~~~G~------it-~~eA~~A~~~g~aD~Ivvq-~EA 187 (418)
T cd04742 116 AKGLRRDADGRVQIANRIIAKVSRPEVAEAFMSPAPERILKKLLAEGK------IT-EEQAELARRVPVADDITVE-ADS 187 (418)
T ss_pred hcCCcccccccccccceEEEecCChhhhhhhcCCCCHHHHHHHHHcCC------CC-HHHHHHHHhCCCCCEEEEc-ccC
Confidence 21 0000 122333221 1 1111 12 23345555556 6999997 444
Q ss_pred CCC----CCHHH---HHHHHhcC--------CCCEEEecCC-ChHhHHHhhc--CCEEEEeceEee
Q psy9039 198 GDP----ADVSQ---LMSVKNAV--------DLPILIGSGV-TSDNVEHYMT--ADALIIGSHFKQ 245 (251)
Q Consensus 198 g~~----~~~~~---l~~vr~~~--------~~PV~vG~GI-~~~~v~~~~~--ADGvIVGS~~~~ 245 (251)
|.. +...+ +.++++.. ++||+++||| |++.++.++. ||||.+||.|.-
T Consensus 188 GGH~g~~~~~~Llp~v~~l~d~v~~~~~~~~~ipViAAGGI~tg~~vaAA~alGAd~V~~GT~fla 253 (418)
T cd04742 188 GGHTDNRPLSVLLPTIIRLRDELAARYGYRRPIRVGAAGGIGTPEAAAAAFALGADFIVTGSINQC 253 (418)
T ss_pred CCCCCCccHHhHHHHHHHHHHHHhhccccCCCceEEEECCCCCHHHHHHHHHcCCcEEeeccHHHh
Confidence 433 22334 44444433 6999999999 8999998886 999999999864
|
NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. |
| >cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF) | Back alignment and domain information |
|---|
Probab=98.90 E-value=2.7e-08 Score=87.43 Aligned_cols=179 Identities=17% Similarity=0.202 Sum_probs=113.2
Q ss_pred CCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHHHHHHHHcCccceecc
Q psy9039 43 PPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQAAGLDFIRAE 122 (251)
Q Consensus 43 ~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g~~Fir~~ 122 (251)
+.|.+.|+ |.+.+-|...-.... ++ ...+++++++.++ +|+.++.=... .....-....|++.+-.+
T Consensus 34 ~~~~~~G~-~~i~i~d~~~~~~~~----~~-----~~~~i~~i~~~~~--~pv~~~GGI~s-~~d~~~~l~~G~~~v~ig 100 (243)
T cd04731 34 KRYNEQGA-DELVFLDITASSEGR----ET-----MLDVVERVAEEVF--IPLTVGGGIRS-LEDARRLLRAGADKVSIN 100 (243)
T ss_pred HHHHHCCC-CEEEEEcCCcccccC----cc-----cHHHHHHHHHhCC--CCEEEeCCCCC-HHHHHHHHHcCCceEEEC
Confidence 66778899 999887666422222 11 4467788888877 79887765554 333333333455554432
Q ss_pred cccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHhhcc-----------CCCCCCcccHHHHHHHhhhccccEEE
Q psy9039 123 SFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHS-----------SHAITADVDITETAKAASFFLSDGLI 191 (251)
Q Consensus 123 ~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~k~~-----------~~~~~~~~~i~~~a~~a~~~~~D~v~ 191 (251)
.+ ...+...+.+..++++.+.+.+- +..|++ ... ..+.+..+.++.+...|+|.++
T Consensus 101 ---------~~-~~~~p~~~~~i~~~~~~~~i~~~--ld~k~~~~~~~~v~~~~~~~-~~~~~~~~~~~~l~~~G~d~i~ 167 (243)
T cd04731 101 ---------SA-AVENPELIREIAKRFGSQCVVVS--IDAKRRGDGGYEVYTHGGRK-PTGLDAVEWAKEVEELGAGEIL 167 (243)
T ss_pred ---------ch-hhhChHHHHHHHHHcCCCCEEEE--EEeeecCCCceEEEEcCCce-ecCCCHHHHHHHHHHCCCCEEE
Confidence 11 11234445566666654333322 222211 111 1234555666666667999999
Q ss_pred ecCCCCC---CCCCHHHHHHHHhcCCCCEEEecCC-ChHhHHHhhc---CCEEEEeceEeecC
Q psy9039 192 ITGNATG---DPADVSQLMSVKNAVDLPILIGSGV-TSDNVEHYMT---ADALIIGSHFKQGG 247 (251)
Q Consensus 192 VTG~~~g---~~~~~~~l~~vr~~~~~PV~vG~GI-~~~~v~~~~~---ADGvIVGS~~~~~g 247 (251)
+|+.... ...+.+.++++++.+++||++.||| +++++.+++. |||++|||+|..+.
T Consensus 168 v~~i~~~g~~~g~~~~~i~~i~~~~~~pvia~GGi~~~~di~~~l~~~g~dgv~vg~al~~~~ 230 (243)
T cd04731 168 LTSMDRDGTKKGYDLELIRAVSSAVNIPVIASGGAGKPEHFVEAFEEGGADAALAASIFHFGE 230 (243)
T ss_pred EeccCCCCCCCCCCHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHHHhCCCCEEEEeHHHHcCC
Confidence 9986432 2345788999999999999999999 6899998774 99999999997654
|
Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria. |
| >cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate | Back alignment and domain information |
|---|
Probab=98.89 E-value=3.3e-08 Score=85.67 Aligned_cols=146 Identities=18% Similarity=0.231 Sum_probs=86.8
Q ss_pred HHHHHHHhCCCCccEEE-EE--e------eCChHHHHHHHHHcCccceecccccccccCCCceeecCcchhHHHHHhcCC
Q psy9039 81 LCAEIRKVLPPSVPVGV-QI--L------SGCNKAALATAQAAGLDFIRAESFVFGHMADEGLMNAQAGPLLRYRKQIGA 151 (251)
Q Consensus 81 ~i~~vr~~~~~~~P~Gv-n~--~------~N~~~~~~~ia~a~g~~Fir~~~~~~~~~~~~Gli~~da~e~~~~r~~l~~ 151 (251)
.++++|+.++ +|+.. +- + ..........+...|++|+-....... ..++ ....++.+..++.+
T Consensus 51 ~~~~i~~~~~--iPil~~~~~~~~~~~~~ig~~~~~~~~a~~aGad~I~~~~~~~~--~p~~---~~~~~~i~~~~~~g- 122 (219)
T cd04729 51 DIRAIRARVD--LPIIGLIKRDYPDSEVYITPTIEEVDALAAAGADIIALDATDRP--RPDG---ETLAELIKRIHEEY- 122 (219)
T ss_pred HHHHHHHhCC--CCEEEEEecCCCCCCceeCCCHHHHHHHHHcCCCEEEEeCCCCC--CCCC---cCHHHHHHHHHHHh-
Confidence 4566777666 79753 11 1 111123567777788888764210000 0000 02344555555554
Q ss_pred CcchhhhhhHhhccCCCCCCcccHHHHHHHhhhccccEEEec--CC---CC-CCCCCHHHHHHHHhcCCCCEEEecCC-C
Q psy9039 152 DNVLVFTDIKKKHSSHAITADVDITETAKAASFFLSDGLIIT--GN---AT-GDPADVSQLMSVKNAVDLPILIGSGV-T 224 (251)
Q Consensus 152 ~~i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~~~~~D~v~VT--G~---~~-g~~~~~~~l~~vr~~~~~PV~vG~GI-~ 224 (251)
++.++.. . .+.+ .+..+...|+|.+.++ |. .. ....+.+.++++|+.+++||+++||| +
T Consensus 123 -~~~iiv~------v------~t~~-ea~~a~~~G~d~i~~~~~g~t~~~~~~~~~~~~~l~~i~~~~~ipvia~GGI~~ 188 (219)
T cd04729 123 -NCLLMAD------I------STLE-EALNAAKLGFDIIGTTLSGYTEETAKTEDPDFELLKELRKALGIPVIAEGRINS 188 (219)
T ss_pred -CCeEEEE------C------CCHH-HHHHHHHcCCCEEEccCccccccccCCCCCCHHHHHHHHHhcCCCEEEeCCCCC
Confidence 2333321 1 1222 2345555689988764 21 11 12345688999999889999999999 7
Q ss_pred hHhHHHhhc--CCEEEEeceEeecCe
Q psy9039 225 SDNVEHYMT--ADALIIGSHFKQGGR 248 (251)
Q Consensus 225 ~~~v~~~~~--ADGvIVGS~~~~~g~ 248 (251)
++++.+++. |||+++||+|.+..+
T Consensus 189 ~~~~~~~l~~GadgV~vGsal~~~~~ 214 (219)
T cd04729 189 PEQAAKALELGADAVVVGSAITRPEH 214 (219)
T ss_pred HHHHHHHHHCCCCEEEEchHHhChHh
Confidence 999999886 999999999988654
|
This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates. |
| >COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.87 E-value=2.7e-08 Score=86.12 Aligned_cols=157 Identities=20% Similarity=0.278 Sum_probs=99.2
Q ss_pred CCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHHHHHHHHcCccceecc
Q psy9039 43 PPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQAAGLDFIRAE 122 (251)
Q Consensus 43 ~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g~~Fir~~ 122 (251)
....++|+ +.+.+ .+........ .+..+.++++.+... +|+ +.|+. ..+|.+.+++.++..
T Consensus 28 e~al~~Gv-~~vQl--------R~K~~~~~~~-~~~a~~~~~lc~~~~--v~l----iINd~---~dlA~~~~AdGVHlG 88 (211)
T COG0352 28 EAALKGGV-TAVQL--------REKDLSDEEY-LALAEKLRALCQKYG--VPL----IINDR---VDLALAVGADGVHLG 88 (211)
T ss_pred HHHHhCCC-eEEEE--------ecCCCChHHH-HHHHHHHHHHHHHhC--CeE----EecCc---HHHHHhCCCCEEEcC
Confidence 56678999 99974 3332122222 344445555555555 454 45563 677788889998853
Q ss_pred cccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHhhccCCCCCCcccHHHHHHHhhhccccEEEe-----cCCCC
Q psy9039 123 SFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSSHAITADVDITETAKAASFFLSDGLII-----TGNAT 197 (251)
Q Consensus 123 ~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~~~~~D~v~V-----TG~~~ 197 (251)
-+. ......|+.++. . .++ |. +.-+++ .+..|...++|++++ |-++.
T Consensus 89 --------q~D------~~~~~ar~~~~~-~-~iI-------G~----S~h~~e-ea~~A~~~g~DYv~~GpifpT~tK~ 140 (211)
T COG0352 89 --------QDD------MPLAEARELLGP-G-LII-------GL----STHDLE-EALEAEELGADYVGLGPIFPTSTKP 140 (211)
T ss_pred --------Ccc------cchHHHHHhcCC-C-CEE-------Ee----ecCCHH-HHHHHHhcCCCEEEECCcCCCCCCC
Confidence 221 122333444443 1 121 11 112333 456666667999977 33444
Q ss_pred CCCC-CHHHHHHHHhcCCCCEEEecCCChHhHHHhhc--CCEEEEeceEeec
Q psy9039 198 GDPA-DVSQLMSVKNAVDLPILIGSGVTSDNVEHYMT--ADALIIGSHFKQG 246 (251)
Q Consensus 198 g~~~-~~~~l~~vr~~~~~PV~vG~GI~~~~v~~~~~--ADGvIVGS~~~~~ 246 (251)
+.++ .++.++.+++...+|+++-|||+++|+.+++. |||+.|-|+|...
T Consensus 141 ~~~~~G~~~l~~~~~~~~iP~vAIGGi~~~nv~~v~~~Ga~gVAvvsai~~a 192 (211)
T COG0352 141 DAPPLGLEGLREIRELVNIPVVAIGGINLENVPEVLEAGADGVAVVSAITSA 192 (211)
T ss_pred CCCccCHHHHHHHHHhCCCCEEEEcCCCHHHHHHHHHhCCCeEEehhHhhcC
Confidence 4433 46888899998899999999999999999997 9999999998764
|
|
| >TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase | Back alignment and domain information |
|---|
Probab=98.85 E-value=3.3e-08 Score=85.24 Aligned_cols=69 Identities=23% Similarity=0.405 Sum_probs=52.3
Q ss_pred cccHHHHH---HHhhhccccEEEec-CCCCCCCCCHHHHHHHHhcCCCCEEEecCC-ChHhHHHhh-c-CCEEEEe
Q psy9039 172 DVDITETA---KAASFFLSDGLIIT-GNATGDPADVSQLMSVKNAVDLPILIGSGV-TSDNVEHYM-T-ADALIIG 240 (251)
Q Consensus 172 ~~~i~~~a---~~a~~~~~D~v~VT-G~~~g~~~~~~~l~~vr~~~~~PV~vG~GI-~~~~v~~~~-~-ADGvIVG 240 (251)
+.+.++.+ ..++++|.+.+-+. ++.+....+.+.++++|+.+++|+++|||| +++++++++ . ||++|||
T Consensus 130 ~~~~e~~~~~a~aa~~~G~~~i~Le~~sGa~~~v~~e~i~~Vk~~~~~Pv~vGGGIrs~e~a~~l~~~GAD~VVVG 205 (205)
T TIGR01769 130 YNKPEIAAAYCLAAKYFGMKWVYLEAGSGASYPVNPETISLVKKASGIPLIVGGGIRSPEIAYEIVLAGADAIVTG 205 (205)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEEcCCCCCCCCCHHHHHHHHHhhCCCEEEeCCCCCHHHHHHHHHcCCCEEEeC
Confidence 34444444 44456788877552 233344567899999999999999999999 799999997 4 9999998
|
This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum. |
| >cd04732 HisA HisA | Back alignment and domain information |
|---|
Probab=98.85 E-value=3.2e-08 Score=86.10 Aligned_cols=181 Identities=17% Similarity=0.187 Sum_probs=113.3
Q ss_pred CCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHHHHHHHHcCccceecc
Q psy9039 43 PPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQAAGLDFIRAE 122 (251)
Q Consensus 43 ~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g~~Fir~~ 122 (251)
+.|.+.|+ |.+.|-+.... |.. . .....+++++++.++ +|+-+..-.+. .+...-....|++++-.+
T Consensus 36 ~~~~~~g~-d~l~v~dl~~~-~~~----~----~~~~~~i~~i~~~~~--~pv~~~GgI~~-~e~~~~~~~~Gad~vvig 102 (234)
T cd04732 36 KKWEEAGA-KWLHVVDLDGA-KGG----E----PVNLELIEEIVKAVG--IPVQVGGGIRS-LEDIERLLDLGVSRVIIG 102 (234)
T ss_pred HHHHHcCC-CEEEEECCCcc-ccC----C----CCCHHHHHHHHHhcC--CCEEEeCCcCC-HHHHHHHHHcCCCEEEEC
Confidence 55677899 99988544322 110 1 113456777888777 79888877776 444444456777776542
Q ss_pred cccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHh----hccCCCCCCcccHHHHHHHhhhccccEEEecCCC-C
Q psy9039 123 SFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKK----KHSSHAITADVDITETAKAASFFLSDGLIITGNA-T 197 (251)
Q Consensus 123 ~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~----k~~~~~~~~~~~i~~~a~~a~~~~~D~v~VTG~~-~ 197 (251)
. . ...+...+.+..++++.+.+.+--|+.. ..+.. .....+..+.++.....|+|.+++++.. .
T Consensus 103 s---------~-~l~dp~~~~~i~~~~g~~~i~~sid~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ga~~iii~~~~~~ 171 (234)
T cd04732 103 T---------A-AVKNPELVKELLKEYGGERIVVGLDAKDGKVATKGWL-ETSEVSLEELAKRFEELGVKAIIYTDISRD 171 (234)
T ss_pred c---------h-HHhChHHHHHHHHHcCCceEEEEEEeeCCEEEECCCe-eecCCCHHHHHHHHHHcCCCEEEEEeecCC
Confidence 1 1 1123445666677776433322111110 00100 0112344555555555789999988742 2
Q ss_pred C--CCCCHHHHHHHHhcCCCCEEEecCC-ChHhHHHhhc--CCEEEEeceEeecC
Q psy9039 198 G--DPADVSQLMSVKNAVDLPILIGSGV-TSDNVEHYMT--ADALIIGSHFKQGG 247 (251)
Q Consensus 198 g--~~~~~~~l~~vr~~~~~PV~vG~GI-~~~~v~~~~~--ADGvIVGS~~~~~g 247 (251)
| ...+.+.++++++.+++||+++||| +.+++.+++. |||+++||+|..+.
T Consensus 172 g~~~g~~~~~i~~i~~~~~ipvi~~GGi~~~~di~~~~~~Ga~gv~vg~~~~~~~ 226 (234)
T cd04732 172 GTLSGPNFELYKELAAATGIPVIASGGVSSLDDIKALKELGVAGVIVGKALYEGK 226 (234)
T ss_pred CccCCCCHHHHHHHHHhcCCCEEEecCCCCHHHHHHHHHCCCCEEEEeHHHHcCC
Confidence 2 2356789999999999999999999 6888999886 99999999997764
|
Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. |
| >cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI | Back alignment and domain information |
|---|
Probab=98.85 E-value=2.9e-08 Score=83.11 Aligned_cols=158 Identities=18% Similarity=0.257 Sum_probs=95.7
Q ss_pred CCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHHHHHHHHcCccceecc
Q psy9039 43 PPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQAAGLDFIRAE 122 (251)
Q Consensus 43 ~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g~~Fir~~ 122 (251)
+.+.++|+ +.|.+ +.+ +. .+ ..+...++++++.+. ++++.++.|.. ..++...|++++...
T Consensus 19 ~~l~~~g~-~~i~l----r~~--~~---~~---~~~~~~~~~i~~~~~---~~~~~l~~~~~---~~~a~~~g~~~vh~~ 79 (196)
T cd00564 19 EAALKGGV-TLVQL----REK--DL---SA---RELLELARALRELCR---KYGVPLIINDR---VDLALAVGADGVHLG 79 (196)
T ss_pred HHHHhcCC-CEEEE----eCC--CC---CH---HHHHHHHHHHHHHHH---HhCCeEEEeCh---HHHHHHcCCCEEecC
Confidence 66778899 99975 222 11 11 113345566665543 56777777762 556677788877642
Q ss_pred cccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHhhccCCCCCCcccHHHHHHHhhhccccEEEec-----CCCC
Q psy9039 123 SFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSSHAITADVDITETAKAASFFLSDGLIIT-----GNAT 197 (251)
Q Consensus 123 ~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~~~~~D~v~VT-----G~~~ 197 (251)
.. + ......++..+. ...+ |... .+.. .++.+...|+|++.+. +.+.
T Consensus 80 --------~~-----~-~~~~~~~~~~~~-~~~~--------g~~~----~t~~-~~~~~~~~g~d~i~~~~~~~~~~~~ 131 (196)
T cd00564 80 --------QD-----D-LPVAEARALLGP-DLII--------GVST----HSLE-EALRAEELGADYVGFGPVFPTPTKP 131 (196)
T ss_pred --------cc-----c-CCHHHHHHHcCC-CCEE--------EeeC----CCHH-HHHHHhhcCCCEEEECCccCCCCCC
Confidence 10 0 011222222221 1111 1111 1222 2344445689999874 3343
Q ss_pred C--CCCCHHHHHHHHhcCCCCEEEecCCChHhHHHhhc--CCEEEEeceEeecC
Q psy9039 198 G--DPADVSQLMSVKNAVDLPILIGSGVTSDNVEHYMT--ADALIIGSHFKQGG 247 (251)
Q Consensus 198 g--~~~~~~~l~~vr~~~~~PV~vG~GI~~~~v~~~~~--ADGvIVGS~~~~~g 247 (251)
+ .+...+.++++++..++||++.|||+++|+.+++. +||+++||+|.+..
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~pv~a~GGi~~~~i~~~~~~Ga~~i~~g~~i~~~~ 185 (196)
T cd00564 132 GAGPPLGLELLREIAELVEIPVVAIGGITPENAAEVLAAGADGVAVISAITGAD 185 (196)
T ss_pred CCCCCCCHHHHHHHHHhCCCCEEEECCCCHHHHHHHHHcCCCEEEEehHhhcCC
Confidence 4 23457889999888899999999999999999996 99999999997654
|
TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions. |
| >PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=98.83 E-value=1e-07 Score=82.35 Aligned_cols=153 Identities=18% Similarity=0.246 Sum_probs=108.3
Q ss_pred CCCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHHHHHHHHcCccceec
Q psy9039 42 LPPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQAAGLDFIRA 121 (251)
Q Consensus 42 a~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g~~Fir~ 121 (251)
++++.++|+ ..++| .++.|. -.+.++++++..++...+|.=+..+ .++...|...|++|+..
T Consensus 28 ~~a~~~gGi-~~iEv------t~~~~~---------~~~~i~~l~~~~~~~~~iGaGTV~~--~~~~~~a~~aGA~fivs 89 (206)
T PRK09140 28 VGALIEAGF-RAIEI------PLNSPD---------PFDSIAALVKALGDRALIGAGTVLS--PEQVDRLADAGGRLIVT 89 (206)
T ss_pred HHHHHHCCC-CEEEE------eCCCcc---------HHHHHHHHHHHcCCCcEEeEEecCC--HHHHHHHHHcCCCEEEC
Confidence 377899999 99987 444441 1236777777765324788888876 46788889999999885
Q ss_pred ccccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHhhccCCCCCCcccHHHHHHHhhhccccEEEecCCCCCCCC
Q psy9039 122 ESFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSSHAITADVDITETAKAASFFLSDGLIITGNATGDPA 201 (251)
Q Consensus 122 ~~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~~~~~D~v~VTG~~~g~~~ 201 (251)
.. ...++.+++...+. .++- |. .+..+ +..|..+|+|++.+ ..+ ..-
T Consensus 90 p~--------------~~~~v~~~~~~~~~---~~~~------G~------~t~~E-~~~A~~~Gad~vk~--Fpa-~~~ 136 (206)
T PRK09140 90 PN--------------TDPEVIRRAVALGM---VVMP------GV------ATPTE-AFAALRAGAQALKL--FPA-SQL 136 (206)
T ss_pred CC--------------CCHHHHHHHHHCCC---cEEc------cc------CCHHH-HHHHHHcCCCEEEE--CCC-CCC
Confidence 21 23456777776654 2210 11 23333 45666679999987 111 123
Q ss_pred CHHHHHHHHhcC--CCCEEEecCCChHhHHHhhc--CCEEEEeceEee
Q psy9039 202 DVSQLMSVKNAV--DLPILIGSGVTSDNVEHYMT--ADALIIGSHFKQ 245 (251)
Q Consensus 202 ~~~~l~~vr~~~--~~PV~vG~GI~~~~v~~~~~--ADGvIVGS~~~~ 245 (251)
.++.++++++.. ++|+++-||||++|+.++++ ||++.+||++.+
T Consensus 137 G~~~l~~l~~~~~~~ipvvaiGGI~~~n~~~~~~aGa~~vav~s~l~~ 184 (206)
T PRK09140 137 GPAGIKALRAVLPPDVPVFAVGGVTPENLAPYLAAGAAGFGLGSALYR 184 (206)
T ss_pred CHHHHHHHHhhcCCCCeEEEECCCCHHHHHHHHHCCCeEEEEehHhcc
Confidence 478899998877 49999999999999999997 999999999875
|
|
| >TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein | Back alignment and domain information |
|---|
Probab=98.83 E-value=4.1e-08 Score=85.60 Aligned_cols=63 Identities=14% Similarity=0.376 Sum_probs=51.6
Q ss_pred hccccEEEec-CCCCCCCCCHHHHHHHHhcC-CCCEEEecCC-ChHhHHHhhc--CCEEEEeceEeec
Q psy9039 184 FFLSDGLIIT-GNATGDPADVSQLMSVKNAV-DLPILIGSGV-TSDNVEHYMT--ADALIIGSHFKQG 246 (251)
Q Consensus 184 ~~~~D~v~VT-G~~~g~~~~~~~l~~vr~~~-~~PV~vG~GI-~~~~v~~~~~--ADGvIVGS~~~~~ 246 (251)
++|--.+-+- |+..+.+.+.+.++++|+.+ ++|+++|||| ++++++++++ ||+++|||.+.+|
T Consensus 147 ~~g~~~vYlE~gs~~g~~v~~e~i~~v~~~~~~~pl~vGGGIrs~e~a~~l~~aGAD~VVVGs~~~~d 214 (223)
T TIGR01768 147 MLGMPIIYLEAGSGAPEPVPPELVAEVKKVLDKARLFVGGGIRSVEKAREMAEAGADTIVTGNVIEED 214 (223)
T ss_pred HcCCcEEEEEecCCCCCCcCHHHHHHHHHHcCCCCEEEecCCCCHHHHHHHHHcCCCEEEECcHHhhC
Confidence 4565544443 44456666788999999998 9999999999 7999999997 9999999999887
|
This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired. |
| >PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=98.82 E-value=4.6e-08 Score=85.71 Aligned_cols=182 Identities=16% Similarity=0.224 Sum_probs=114.1
Q ss_pred CCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHHHHHHHHcCccceecc
Q psy9039 43 PPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQAAGLDFIRAE 122 (251)
Q Consensus 43 ~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g~~Fir~~ 122 (251)
+.+.+.|+ |.+.+-+.... .. + .......++++.+.++ +|+-++.=.|+ .+....+...|++.+..+
T Consensus 39 ~~~~~~G~-~~l~i~dl~~~-~~-----~---~~~~~~~i~~i~~~~~--~~l~v~GGi~~-~~~~~~~~~~Ga~~v~iG 105 (241)
T PRK13585 39 KRWVDAGA-ETLHLVDLDGA-FE-----G---ERKNAEAIEKIIEAVG--VPVQLGGGIRS-AEDAASLLDLGVDRVILG 105 (241)
T ss_pred HHHHHcCC-CEEEEEechhh-hc-----C---CcccHHHHHHHHHHcC--CcEEEcCCcCC-HHHHHHHHHcCCCEEEEC
Confidence 44567899 99986443321 11 1 1124556777777777 78888765565 455566667788877653
Q ss_pred cccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHh----hccCCCCCCcccHHHHHHHhhhccccEEEecCCCCC
Q psy9039 123 SFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKK----KHSSHAITADVDITETAKAASFFLSDGLIITGNATG 198 (251)
Q Consensus 123 ~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~----k~~~~~~~~~~~i~~~a~~a~~~~~D~v~VTG~~~g 198 (251)
... ..+...+.+.++.++.+.+-+=-|+.. ..+... ..+....+.++.....|++.+.+|+....
T Consensus 106 ----s~~------~~~~~~~~~i~~~~g~~~i~~sid~~~~~v~~~g~~~-~~~~~~~~~~~~~~~~G~~~i~~~~~~~~ 174 (241)
T PRK13585 106 ----TAA------VENPEIVRELSEEFGSERVMVSLDAKDGEVVIKGWTE-KTGYTPVEAAKRFEELGAGSILFTNVDVE 174 (241)
T ss_pred ----hHH------hhChHHHHHHHHHhCCCcEEEEEEeeCCEEEECCCcc-cCCCCHHHHHHHHHHcCCCEEEEEeecCC
Confidence 111 123344566667766433321101100 011110 11224556666666679999999885322
Q ss_pred ---CCCCHHHHHHHHhcCCCCEEEecCC-ChHhHHHhhc--CCEEEEeceEeecCe
Q psy9039 199 ---DPADVSQLMSVKNAVDLPILIGSGV-TSDNVEHYMT--ADALIIGSHFKQGGR 248 (251)
Q Consensus 199 ---~~~~~~~l~~vr~~~~~PV~vG~GI-~~~~v~~~~~--ADGvIVGS~~~~~g~ 248 (251)
...+.+.++++++.+++||+++||| +++++.++.. |||++|||+|.++..
T Consensus 175 g~~~g~~~~~i~~i~~~~~iPvia~GGI~~~~di~~~~~~Ga~gv~vgsa~~~~~~ 230 (241)
T PRK13585 175 GLLEGVNTEPVKELVDSVDIPVIASGGVTTLDDLRALKEAGAAGVVVGSALYKGKF 230 (241)
T ss_pred CCcCCCCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCCEEEEEHHHhcCCc
Confidence 2346788999999999999999999 5899999875 999999999987653
|
|
| >PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=98.82 E-value=2e-07 Score=79.28 Aligned_cols=152 Identities=16% Similarity=0.193 Sum_probs=101.6
Q ss_pred CCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHHHHHHHHcCccceecc
Q psy9039 43 PPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQAAGLDFIRAE 122 (251)
Q Consensus 43 ~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g~~Fir~~ 122 (251)
+++.++|+ ..+++ .+..+. -..+++.+++..+. +-.|.....+ ......|.+.|++|+...
T Consensus 31 ~~~~~~Gv-~~vql------r~k~~~---------~~e~~~~~~~~~~~-~~~g~gtvl~--~d~~~~A~~~gAdgv~~p 91 (187)
T PRK07455 31 EAVAAGGM-RLIEI------TWNSDQ---------PAELISQLREKLPE-CIIGTGTILT--LEDLEEAIAAGAQFCFTP 91 (187)
T ss_pred HHHHHCCC-CEEEE------eCCCCC---------HHHHHHHHHHhCCC-cEEeEEEEEc--HHHHHHHHHcCCCEEECC
Confidence 67789999 99986 344331 12344445544442 2455555554 367888899999998642
Q ss_pred cccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHhhccCCCCCCcccHHHHHHHhhhccccEEEecCCCCCCCCC
Q psy9039 123 SFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSSHAITADVDITETAKAASFFLSDGLIITGNATGDPAD 202 (251)
Q Consensus 123 ~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~~~~~D~v~VTG~~~g~~~~ 202 (251)
. ...+..++++..+.+ .++ |. -+..+ +..|...|+|++.+ ..|.....
T Consensus 92 ~--------------~~~~~~~~~~~~~~~--~i~-------G~------~t~~e-~~~A~~~Gadyv~~--Fpt~~~~G 139 (187)
T PRK07455 92 H--------------VDPELIEAAVAQDIP--IIP-------GA------LTPTE-IVTAWQAGASCVKV--FPVQAVGG 139 (187)
T ss_pred C--------------CCHHHHHHHHHcCCC--EEc-------Cc------CCHHH-HHHHHHCCCCEEEE--CcCCcccC
Confidence 0 123466677776542 122 11 23344 34555579999988 33332335
Q ss_pred HHHHHHHHhcC-CCCEEEecCCChHhHHHhhc--CCEEEEeceEee
Q psy9039 203 VSQLMSVKNAV-DLPILIGSGVTSDNVEHYMT--ADALIIGSHFKQ 245 (251)
Q Consensus 203 ~~~l~~vr~~~-~~PV~vG~GI~~~~v~~~~~--ADGvIVGS~~~~ 245 (251)
.+.++++++.. ++|+++-||||++|+.++++ |+|+.|||++..
T Consensus 140 ~~~l~~~~~~~~~ipvvaiGGI~~~n~~~~l~aGa~~vav~s~i~~ 185 (187)
T PRK07455 140 ADYIKSLQGPLGHIPLIPTGGVTLENAQAFIQAGAIAVGLSGQLFP 185 (187)
T ss_pred HHHHHHHHhhCCCCcEEEeCCCCHHHHHHHHHCCCeEEEEehhccc
Confidence 78899999888 69999999999999999997 999999999865
|
|
| >TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein | Back alignment and domain information |
|---|
Probab=98.80 E-value=8.4e-08 Score=86.88 Aligned_cols=76 Identities=29% Similarity=0.395 Sum_probs=58.4
Q ss_pred cHHHHHHHhhhccccEEEecCCCCC------------------CC-C-----CHHHHHHHHhcCCCCEEEecCC-ChHhH
Q psy9039 174 DITETAKAASFFLSDGLIITGNATG------------------DP-A-----DVSQLMSVKNAVDLPILIGSGV-TSDNV 228 (251)
Q Consensus 174 ~i~~~a~~a~~~~~D~v~VTG~~~g------------------~~-~-----~~~~l~~vr~~~~~PV~vG~GI-~~~~v 228 (251)
...++++.++..|+|++.+++.-.+ .. + .++.+.++++.+++||+..||| |++++
T Consensus 170 ~~~~~a~~l~~~G~d~i~v~nt~~~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~ipvi~~GGI~s~~da 249 (300)
T TIGR01037 170 DITEIAKAAEEAGADGLTLINTLRGMKIDIKTGKPILANKTGGLSGPAIKPIALRMVYDVYKMVDIPIIGVGGITSFEDA 249 (300)
T ss_pred hHHHHHHHHHHcCCCEEEEEccCCccccccccCceeeCCCCccccchhhhHHHHHHHHHHHhcCCCCEEEECCCCCHHHH
Confidence 4556666666789999998743111 01 0 1356788999999999999999 79999
Q ss_pred HHhhc--CCEEEEeceEeecCee
Q psy9039 229 EHYMT--ADALIIGSHFKQGGRT 249 (251)
Q Consensus 229 ~~~~~--ADGvIVGS~~~~~g~~ 249 (251)
.+++. ||+|.+|+++..++.+
T Consensus 250 ~~~l~~GAd~V~igr~~l~~p~~ 272 (300)
T TIGR01037 250 LEFLMAGASAVQVGTAVYYRGFA 272 (300)
T ss_pred HHHHHcCCCceeecHHHhcCchH
Confidence 99985 9999999999998843
|
This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase. |
| >TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.5e-07 Score=80.53 Aligned_cols=169 Identities=17% Similarity=0.214 Sum_probs=103.4
Q ss_pred hCCCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEE-eeCChHHHHHHHHHcCccce
Q psy9039 41 VLPPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQI-LSGCNKAALATAQAAGLDFI 119 (251)
Q Consensus 41 ~a~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~-~~N~~~~~~~ia~a~g~~Fi 119 (251)
-++.| ++|+ |.|++ +.|+..+ .|+ ..++++|+..++ ..+++-+ +.|+.......+...|++|+
T Consensus 17 ~~~~l-~~~v-~~iev----~~~l~~~--~g~-------~~i~~l~~~~~~-~~i~~d~k~~d~~~~~~~~~~~~Gad~i 80 (206)
T TIGR03128 17 LAEKV-ADYV-DIIEI----GTPLIKN--EGI-------EAVKEMKEAFPD-RKVLADLKTMDAGEYEAEQAFAAGADIV 80 (206)
T ss_pred HHHHc-ccCe-eEEEe----CCHHHHH--hCH-------HHHHHHHHHCCC-CEEEEEEeeccchHHHHHHHHHcCCCEE
Confidence 33777 8999 99975 6666554 232 456677766432 3555444 23543334566677899998
Q ss_pred ecccccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHhhccCCCCCCcccHHHHHHHhhhccccEEEec-CCC--
Q psy9039 120 RAESFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSSHAITADVDITETAKAASFFLSDGLIIT-GNA-- 196 (251)
Q Consensus 120 r~~~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~~~~~D~v~VT-G~~-- 196 (251)
-...+.. .....++.++.+++|. +++.++ + ++ .+..+.++.+...++|.+.+. |..
T Consensus 81 ~vh~~~~---------~~~~~~~i~~~~~~g~---~~~~~~------~--~~-~t~~~~~~~~~~~g~d~v~~~pg~~~~ 139 (206)
T TIGR03128 81 TVLGVAD---------DATIKGAVKAAKKHGK---EVQVDL------I--NV-KDKVKRAKELKELGADYIGVHTGLDEQ 139 (206)
T ss_pred EEeccCC---------HHHHHHHHHHHHHcCC---EEEEEe------c--CC-CChHHHHHHHHHcCCCEEEEcCCcCcc
Confidence 7542111 0123456777777764 332111 0 11 223344455554599998774 221
Q ss_pred CCCCCCHHHHHHHHhcCC-CCEEEecCCChHhHHHhhc--CCEEEEeceEeec
Q psy9039 197 TGDPADVSQLMSVKNAVD-LPILIGSGVTSDNVEHYMT--ADALIIGSHFKQG 246 (251)
Q Consensus 197 ~g~~~~~~~l~~vr~~~~-~PV~vG~GI~~~~v~~~~~--ADGvIVGS~~~~~ 246 (251)
+-.+...+.++++++..+ .++.+-|||+++|+.++++ ||++++||+|.+.
T Consensus 140 ~~~~~~~~~i~~l~~~~~~~~i~v~GGI~~~n~~~~~~~Ga~~v~vGsai~~~ 192 (206)
T TIGR03128 140 AKGQNPFEDLQTILKLVKEARVAVAGGINLDTIPDVIKLGPDIVIVGGAITKA 192 (206)
T ss_pred cCCCCCHHHHHHHHHhcCCCcEEEECCcCHHHHHHHHHcCCCEEEEeehhcCC
Confidence 111234577888887664 5666689999999999996 9999999999864
|
at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase. |
| >PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.3e-07 Score=82.07 Aligned_cols=156 Identities=19% Similarity=0.218 Sum_probs=109.8
Q ss_pred hhCCCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCC--CccEEEEEeeCChHHHHHHHHHcCcc
Q psy9039 40 KVLPPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPP--SVPVGVQILSGCNKAALATAQAAGLD 117 (251)
Q Consensus 40 ~~a~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~--~~P~Gvn~~~N~~~~~~~ia~a~g~~ 117 (251)
+-+++|.++|+ ..+|| +|+.|. -...++++++.+++ ..-+|.=+..+ ..+..-|...|++
T Consensus 29 ~~~~al~~~Gi-~~iEi------t~~~~~---------a~~~i~~l~~~~~~~p~~~vGaGTV~~--~~~~~~a~~aGA~ 90 (213)
T PRK06552 29 KISLAVIKGGI-KAIEV------TYTNPF---------ASEVIKELVELYKDDPEVLIGAGTVLD--AVTARLAILAGAQ 90 (213)
T ss_pred HHHHHHHHCCC-CEEEE------ECCCcc---------HHHHHHHHHHHcCCCCCeEEeeeeCCC--HHHHHHHHHcCCC
Confidence 33488999999 99987 666652 33466777776631 14789988886 4677888889999
Q ss_pred ceecccccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHhhccCCCCCCcccHHHHHHHhhhccccEEEecCCCC
Q psy9039 118 FIRAESFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSSHAITADVDITETAKAASFFLSDGLIITGNAT 197 (251)
Q Consensus 118 Fir~~~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~~~~~D~v~VTG~~~ 197 (251)
|+=... -..++.+++++.+. .++ | ...+.. .+..|..+|+|.+.+= -
T Consensus 91 FivsP~--------------~~~~v~~~~~~~~i---~~i---------P---G~~T~~-E~~~A~~~Gad~vklF--P- 137 (213)
T PRK06552 91 FIVSPS--------------FNRETAKICNLYQI---PYL---------P---GCMTVT-EIVTALEAGSEIVKLF--P- 137 (213)
T ss_pred EEECCC--------------CCHHHHHHHHHcCC---CEE---------C---CcCCHH-HHHHHHHcCCCEEEEC--C-
Confidence 966320 13457777777654 222 1 122333 3456666899999881 1
Q ss_pred CCCCCHHHHHHHHhcCC-CCEEEecCCChHhHHHhhc--CCEEEEeceEeec
Q psy9039 198 GDPADVSQLMSVKNAVD-LPILIGSGVTSDNVEHYMT--ADALIIGSHFKQG 246 (251)
Q Consensus 198 g~~~~~~~l~~vr~~~~-~PV~vG~GI~~~~v~~~~~--ADGvIVGS~~~~~ 246 (251)
......+.++.++...+ +|++.-|||+.+|+.++++ ++++.+||++...
T Consensus 138 a~~~G~~~ik~l~~~~p~ip~~atGGI~~~N~~~~l~aGa~~vavgs~l~~~ 189 (213)
T PRK06552 138 GSTLGPSFIKAIKGPLPQVNVMVTGGVNLDNVKDWFAAGADAVGIGGELNKL 189 (213)
T ss_pred cccCCHHHHHHHhhhCCCCEEEEECCCCHHHHHHHHHCCCcEEEEchHHhCc
Confidence 11223678998888874 9999999999999999997 9999999998653
|
|
| >COG2070 Dioxygenases related to 2-nitropropane dioxygenase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.78 E-value=2.2e-08 Score=92.47 Aligned_cols=72 Identities=22% Similarity=0.366 Sum_probs=60.3
Q ss_pred cHHHHHHHhhhccccEEEecCCCCCCCC--------CHHHHHHHHhcCC-CCEEEecCC-ChHhHHHhhc--CCEEEEec
Q psy9039 174 DITETAKAASFFLSDGLIITGNATGDPA--------DVSQLMSVKNAVD-LPILIGSGV-TSDNVEHYMT--ADALIIGS 241 (251)
Q Consensus 174 ~i~~~a~~a~~~~~D~v~VTG~~~g~~~--------~~~~l~~vr~~~~-~PV~vG~GI-~~~~v~~~~~--ADGvIVGS 241 (251)
...+.|+.++..|+|++++.|...|... ...++.++++.++ +||++.||| +.+.+..++. ||||.+||
T Consensus 135 ~~~~~A~~~~~~G~d~vI~~g~eAGGH~g~~~~~~~t~~Lv~ev~~~~~~iPViAAGGI~dg~~i~AAlalGA~gVq~GT 214 (336)
T COG2070 135 ITVREALKAERAGADAVIAQGAEAGGHRGGVDLEVSTFALVPEVVDAVDGIPVIAAGGIADGRGIAAALALGADGVQMGT 214 (336)
T ss_pred CCHHHHHHHHhCCCCEEEecCCcCCCcCCCCCCCccHHHHHHHHHHHhcCCCEEEecCccChHHHHHHHHhccHHHHhhh
Confidence 4456677777789999999998665432 2578999999999 899999999 8999988886 99999999
Q ss_pred eEee
Q psy9039 242 HFKQ 245 (251)
Q Consensus 242 ~~~~ 245 (251)
+|.-
T Consensus 215 ~Fl~ 218 (336)
T COG2070 215 RFLA 218 (336)
T ss_pred hhhc
Confidence 9974
|
|
| >cd00452 KDPG_aldolase KDPG and KHG aldolase | Back alignment and domain information |
|---|
Probab=98.76 E-value=2.1e-07 Score=79.09 Aligned_cols=152 Identities=15% Similarity=0.187 Sum_probs=105.9
Q ss_pred CCCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHHHHHHHHcCccceec
Q psy9039 42 LPPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQAAGLDFIRA 121 (251)
Q Consensus 42 a~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g~~Fir~ 121 (251)
++++.++|+ +.|++ .++.+. ....++.+++..++ ..+|.-...+ ...+..+...|++|+..
T Consensus 22 ~~~l~~~G~-~~vev------~~~~~~---------~~~~i~~l~~~~~~-~~iGag~v~~--~~~~~~a~~~Ga~~i~~ 82 (190)
T cd00452 22 AEALIEGGI-RAIEI------TLRTPG---------ALEAIRALRKEFPE-ALIGAGTVLT--PEQADAAIAAGAQFIVS 82 (190)
T ss_pred HHHHHHCCC-CEEEE------eCCChh---------HHHHHHHHHHHCCC-CEEEEEeCCC--HHHHHHHHHcCCCEEEc
Confidence 367889999 99986 344331 23377788887764 4778766653 35678888899999874
Q ss_pred ccccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHhhccCCCCCCcccHHHHHHHhhhccccEEEecCCCCCCCC
Q psy9039 122 ESFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSSHAITADVDITETAKAASFFLSDGLIITGNATGDPA 201 (251)
Q Consensus 122 ~~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~~~~~D~v~VTG~~~g~~~ 201 (251)
. + ...++.+++++++. .++- |. .+. +.+..|...|+|++.+.-.. ..
T Consensus 83 p----------~----~~~~~~~~~~~~~~---~~i~------gv------~t~-~e~~~A~~~Gad~i~~~p~~---~~ 129 (190)
T cd00452 83 P----------G----LDPEVVKAANRAGI---PLLP------GV------ATP-TEIMQALELGADIVKLFPAE---AV 129 (190)
T ss_pred C----------C----CCHHHHHHHHHcCC---cEEC------Cc------CCH-HHHHHHHHCCCCEEEEcCCc---cc
Confidence 2 0 12457777777754 2221 11 133 34566666799999985321 12
Q ss_pred CHHHHHHHHhcC-CCCEEEecCCChHhHHHhhc--CCEEEEeceEee
Q psy9039 202 DVSQLMSVKNAV-DLPILIGSGVTSDNVEHYMT--ADALIIGSHFKQ 245 (251)
Q Consensus 202 ~~~~l~~vr~~~-~~PV~vG~GI~~~~v~~~~~--ADGvIVGS~~~~ 245 (251)
..+.++.+++.. ++|+++-||||++|+.++++ +|++.+||.+.+
T Consensus 130 g~~~~~~l~~~~~~~p~~a~GGI~~~n~~~~~~~G~~~v~v~s~i~~ 176 (190)
T cd00452 130 GPAYIKALKGPFPQVRFMPTGGVSLDNAAEWLAAGVVAVGGGSLLPK 176 (190)
T ss_pred CHHHHHHHHhhCCCCeEEEeCCCCHHHHHHHHHCCCEEEEEchhcch
Confidence 567888888776 59999999999999999997 999999999864
|
This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources. |
| >cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure | Back alignment and domain information |
|---|
Probab=98.76 E-value=1.4e-07 Score=78.13 Aligned_cols=167 Identities=22% Similarity=0.270 Sum_probs=95.8
Q ss_pred CCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHHHH----HHHHcCccc
Q psy9039 43 PPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALA----TAQAAGLDF 118 (251)
Q Consensus 43 ~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~----ia~a~g~~F 118 (251)
+.+.++|+ |.+.+.+....|..... .++ +.+..+++..+ .|++++++.|++..... .+...|++.
T Consensus 19 ~~~~~~G~-~~v~~~~~~~~~~~~~~-~~~-------~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~a~~~~~~g~d~ 87 (200)
T cd04722 19 KAAAEAGA-DAIIVGTRSSDPEEAET-DDK-------EVLKEVAAETD--LPLGVQLAINDAAAAVDIAAAAARAAGADG 87 (200)
T ss_pred HHHHcCCC-CEEEEeeEEECcccCCC-ccc-------cHHHHHHhhcC--CcEEEEEccCCchhhhhHHHHHHHHcCCCE
Confidence 66778999 99998776655554431 121 44556666666 79999999987433332 445556666
Q ss_pred eecccccccccCCCceeecC-cchh-HHHHHhcCCCcchhhhhhHhhccCCCCCCcccHHHHHHHhhhccccEEEecCCC
Q psy9039 119 IRAESFVFGHMADEGLMNAQ-AGPL-LRYRKQIGADNVLVFTDIKKKHSSHAITADVDITETAKAASFFLSDGLIITGNA 196 (251)
Q Consensus 119 ir~~~~~~~~~~~~Gli~~d-a~e~-~~~r~~l~~~~i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~~~~~D~v~VTG~~ 196 (251)
+..+...... +. ..+. ...++.+ .++.+...+... .... .. . ....++|.+.+++..
T Consensus 88 v~l~~~~~~~--------~~~~~~~~~~i~~~~--~~~~v~~~~~~~------~~~~---~~-~-~~~~g~d~i~~~~~~ 146 (200)
T cd04722 88 VEIHGAVGYL--------AREDLELIRELREAV--PDVKVVVKLSPT------GELA---AA-A-AEEAGVDEVGLGNGG 146 (200)
T ss_pred EEEeccCCcH--------HHHHHHHHHHHHHhc--CCceEEEEECCC------Cccc---hh-h-HHHcCCCEEEEcCCc
Confidence 6553111100 00 1112 2233333 133443222211 1111 11 0 233589999886643
Q ss_pred CCCC---CC---HHHHHHHHhcCCCCEEEecCCC-hHhHHHhhc--CCEEEEec
Q psy9039 197 TGDP---AD---VSQLMSVKNAVDLPILIGSGVT-SDNVEHYMT--ADALIIGS 241 (251)
Q Consensus 197 ~g~~---~~---~~~l~~vr~~~~~PV~vG~GI~-~~~v~~~~~--ADGvIVGS 241 (251)
.+.. .. ...++++++..++||+++|||+ ++++.+++. ||+++|||
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~pi~~~GGi~~~~~~~~~~~~Gad~v~vgs 200 (200)
T cd04722 147 GGGGGRDAVPIADLLLILAKRGSKVPVIAGGGINDPEDAAEALALGADGVIVGS 200 (200)
T ss_pred CCCCCccCchhHHHHHHHHHhcCCCCEEEECCCCCHHHHHHHHHhCCCEEEecC
Confidence 2221 11 2446667777899999999995 599999986 99999997
|
Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN. |
| >TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ | Back alignment and domain information |
|---|
Probab=98.76 E-value=1.7e-07 Score=81.73 Aligned_cols=178 Identities=16% Similarity=0.178 Sum_probs=104.3
Q ss_pred CCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHHHHHHHHcCccceecc
Q psy9039 43 PPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQAAGLDFIRAE 122 (251)
Q Consensus 43 ~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g~~Fir~~ 122 (251)
+.+.+.|+ |.+.+-+..+.=... | ....+++++++.++ .|+-+..=... .....-....|++++-.+
T Consensus 37 ~~~~~~g~-~~i~i~dl~~~~~~~----~-----~n~~~~~~i~~~~~--~pv~~~ggi~~-~~d~~~~~~~G~~~vilg 103 (232)
T TIGR03572 37 RIYNAKGA-DELIVLDIDASKRGR----E-----PLFELISNLAEECF--MPLTVGGGIRS-LEDAKKLLSLGADKVSIN 103 (232)
T ss_pred HHHHHcCC-CEEEEEeCCCcccCC----C-----CCHHHHHHHHHhCC--CCEEEECCCCC-HHHHHHHHHcCCCEEEEC
Confidence 66778999 999875554321111 1 13456677777777 68766532222 223222334455555432
Q ss_pred cccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHhh----------ccCCCCCCcccHHHHHHHhhhccccEEEe
Q psy9039 123 SFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKK----------HSSHAITADVDITETAKAASFFLSDGLII 192 (251)
Q Consensus 123 ~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~k----------~~~~~~~~~~~i~~~a~~a~~~~~D~v~V 192 (251)
. . ...+.+.+.+..++++...+.+--|+... .+.. ........+.++.....|+|.+++
T Consensus 104 ~---------~-~l~~~~~~~~~~~~~~~~~i~vsld~~~~~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~G~d~i~i 172 (232)
T TIGR03572 104 T---------A-ALENPDLIEEAARRFGSQCVVVSIDVKKELDGSDYKVYSDNGR-RATGRDPVEWAREAEQLGAGEILL 172 (232)
T ss_pred h---------h-HhcCHHHHHHHHHHcCCceEEEEEEeccCCCCCcEEEEECCCc-ccCCCCHHHHHHHHHHcCCCEEEE
Confidence 1 0 11233445556666654322211122110 0000 011234456666666679999999
Q ss_pred cCCCC---CCCCCHHHHHHHHhcCCCCEEEecCC-ChHhHHH-hhc--CCEEEEeceEe
Q psy9039 193 TGNAT---GDPADVSQLMSVKNAVDLPILIGSGV-TSDNVEH-YMT--ADALIIGSHFK 244 (251)
Q Consensus 193 TG~~~---g~~~~~~~l~~vr~~~~~PV~vG~GI-~~~~v~~-~~~--ADGvIVGS~~~ 244 (251)
|+... ....+.+.++++++.+++||+++||| +.+++.+ +.. |||+++||+|.
T Consensus 173 ~~i~~~g~~~g~~~~~~~~i~~~~~ipvia~GGi~s~~di~~~l~~~gadgV~vg~a~h 231 (232)
T TIGR03572 173 NSIDRDGTMKGYDLELIKTVSDAVSIPVIALGGAGSLDDLVEVALEAGASAVAAASLFH 231 (232)
T ss_pred eCCCccCCcCCCCHHHHHHHHhhCCCCEEEECCCCCHHHHHHHHHHcCCCEEEEehhhh
Confidence 99422 23346789999999999999999999 6899998 544 99999999983
|
This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr |
| >cd02812 PcrB_like PcrB_like proteins | Back alignment and domain information |
|---|
Probab=98.76 E-value=2.3e-07 Score=80.73 Aligned_cols=71 Identities=20% Similarity=0.389 Sum_probs=55.1
Q ss_pred cHHHHHHHhhhccccEEEecCCCCCCCCCHHHHHHHHhcC-CCCEEEecCC-ChHhHHHhhc--CCEEEEeceEeec
Q psy9039 174 DITETAKAASFFLSDGLIITGNATGDPADVSQLMSVKNAV-DLPILIGSGV-TSDNVEHYMT--ADALIIGSHFKQG 246 (251)
Q Consensus 174 ~i~~~a~~a~~~~~D~v~VTG~~~g~~~~~~~l~~vr~~~-~~PV~vG~GI-~~~~v~~~~~--ADGvIVGS~~~~~ 246 (251)
.....|..+++.|.-.+-.-++ |...+.+.++++|+.+ ++|+++|||| |+++++++++ ||+++|||++.++
T Consensus 136 ~~~ayA~aae~~g~~ivyLe~S--G~~~~~e~I~~v~~~~~~~pl~vGGGIrs~e~a~~l~~aGAD~VVVGsai~~~ 210 (219)
T cd02812 136 DAAAYALAAEYLGMPIVYLEYS--GAYGPPEVVRAVKKVLGDTPLIVGGGIRSGEQAKEMAEAGADTIVVGNIVEED 210 (219)
T ss_pred HHHHHHHHHHHcCCeEEEeCCC--CCcCCHHHHHHHHHhcCCCCEEEeCCCCCHHHHHHHHHcCCCEEEECchhhCC
Confidence 3444455566555555555533 3346788999999998 9999999999 7999999997 9999999999886
|
One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown. |
| >PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=98.75 E-value=9.9e-08 Score=85.15 Aligned_cols=165 Identities=18% Similarity=0.187 Sum_probs=112.6
Q ss_pred CCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHHHHHHHHcCccceecc
Q psy9039 43 PPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQAAGLDFIRAE 122 (251)
Q Consensus 43 ~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g~~Fir~~ 122 (251)
+.++++|+ ++|-+..+-. |... ....++++|+.++ +|+...=|..+ .++...+...|++.+-..
T Consensus 77 ~~~~~~GA-~aisvlte~~--~f~g----------~~~~l~~v~~~v~--iPvl~kdfi~~-~~qi~~a~~~GAD~VlLi 140 (260)
T PRK00278 77 KAYEAGGA-ACLSVLTDER--FFQG----------SLEYLRAARAAVS--LPVLRKDFIID-PYQIYEARAAGADAILLI 140 (260)
T ss_pred HHHHhCCC-eEEEEecccc--cCCC----------CHHHHHHHHHhcC--CCEEeeeecCC-HHHHHHHHHcCCCEEEEE
Confidence 66788999 9998743332 2221 2456677888888 79888777777 568888899999998863
Q ss_pred cccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHhhccCCCCCCcccHHHHHHHhhhccccEEEecCCCCC-CCC
Q psy9039 123 SFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSSHAITADVDITETAKAASFFLSDGLIITGNATG-DPA 201 (251)
Q Consensus 123 ~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~~~~~D~v~VTG~~~g-~~~ 201 (251)
. ..+. .....++.++.+.+|. ..+.+++ +.++ ++.+...|+|.+++++.... ..+
T Consensus 141 ~---~~l~-----~~~l~~li~~a~~lGl---~~lvevh------------~~~E-~~~A~~~gadiIgin~rdl~~~~~ 196 (260)
T PRK00278 141 V---AALD-----DEQLKELLDYAHSLGL---DVLVEVH------------DEEE-LERALKLGAPLIGINNRNLKTFEV 196 (260)
T ss_pred e---ccCC-----HHHHHHHHHHHHHcCC---eEEEEeC------------CHHH-HHHHHHcCCCEEEECCCCcccccC
Confidence 1 0011 1246777888888875 2222222 2233 34455569999999864322 244
Q ss_pred CHHHHHHHHhcC--CCCEEEecCC-ChHhHHHhhc--CCEEEEeceEeecC
Q psy9039 202 DVSQLMSVKNAV--DLPILIGSGV-TSDNVEHYMT--ADALIIGSHFKQGG 247 (251)
Q Consensus 202 ~~~~l~~vr~~~--~~PV~vG~GI-~~~~v~~~~~--ADGvIVGS~~~~~g 247 (251)
+.+...++.+.. +.|++..||| |++++.+++. |||++|||+|.+.-
T Consensus 197 d~~~~~~l~~~~p~~~~vIaegGI~t~ed~~~~~~~Gad~vlVGsaI~~~~ 247 (260)
T PRK00278 197 DLETTERLAPLIPSDRLVVSESGIFTPEDLKRLAKAGADAVLVGESLMRAD 247 (260)
T ss_pred CHHHHHHHHHhCCCCCEEEEEeCCCCHHHHHHHHHcCCCEEEECHHHcCCC
Confidence 566777776654 3699999999 7999999996 99999999998754
|
|
| >cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP) | Back alignment and domain information |
|---|
Probab=98.75 E-value=4.8e-08 Score=83.72 Aligned_cols=166 Identities=20% Similarity=0.272 Sum_probs=98.7
Q ss_pred CCCcCCCCccEEEEeecCCCCccccCCCchHHHHHH-HHHHHHHHHhCCCCccEEEEEeeCChH-HHHHHHHHcCcccee
Q psy9039 43 PPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANM-TRLCAEIRKVLPPSVPVGVQILSGCNK-AALATAQAAGLDFIR 120 (251)
Q Consensus 43 ~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~-~~~i~~vr~~~~~~~P~Gvn~~~N~~~-~~~~ia~a~g~~Fir 120 (251)
+...++|+ |.+-+ =|... .|-- . ...++++++..+.. +..+-++.|+.. .-..++...+.++++
T Consensus 13 ~~a~~~Gv-d~ig~------i~~~~---s~R~---v~~~~a~~l~~~~~~~-~~~V~v~vn~~~~~i~~ia~~~~~d~Vq 78 (203)
T cd00405 13 LAAAEAGA-DAIGF------IFAPK---SPRY---VSPEQAREIVAALPPF-VKRVGVFVNEDLEEILEIAEELGLDVVQ 78 (203)
T ss_pred HHHHHcCC-CEEEE------ecCCC---CCCC---CCHHHHHHHHHhCCCC-CcEEEEEeCCCHHHHHHHHHhcCCCEEE
Confidence 66778999 99954 33221 1111 2 33445566555521 245666778743 235677778889998
Q ss_pred cccccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHhhccCCCCCCcccHHHHHHHhhhccccEEEecCC-C---
Q psy9039 121 AESFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSSHAITADVDITETAKAASFFLSDGLIITGN-A--- 196 (251)
Q Consensus 121 ~~~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~~~~~D~v~VTG~-~--- 196 (251)
.+ + .+ +...+...|+.++..-++.+. .. . ....+ ...+...++|++.+-.. .
T Consensus 79 lh---g----~e-----~~~~~~~l~~~~~~~~i~~i~-------~~---~-~~~~~-~~~~~~~~aD~il~dt~~~~~~ 134 (203)
T cd00405 79 LH---G----DE-----SPEYCAQLRARLGLPVIKAIR-------VK---D-EEDLE-KAAAYAGEVDAILLDSKSGGGG 134 (203)
T ss_pred EC---C----CC-----CHHHHHHHHhhcCCcEEEEEe-------cC---C-hhhHH-HhhhccccCCEEEEcCCCCCCC
Confidence 64 1 10 123344555555543333331 11 1 11111 11222357888866332 2
Q ss_pred --CCCCCCHHHHHHHHhcCCCCEEEecCCChHhHHHhhc---CCEEEEeceEeec-Ce
Q psy9039 197 --TGDPADVSQLMSVKNAVDLPILIGSGVTSDNVEHYMT---ADALIIGSHFKQG-GR 248 (251)
Q Consensus 197 --~g~~~~~~~l~~vr~~~~~PV~vG~GI~~~~v~~~~~---ADGvIVGS~~~~~-g~ 248 (251)
+|...+++.+++++ .++|++++||||++|+.++++ ++|+.|+|.|... |.
T Consensus 135 Gg~g~~~~~~~l~~~~--~~~PvilaGGI~~~Nv~~~i~~~~~~gvdv~S~ie~~pg~ 190 (203)
T cd00405 135 GGTGKTFDWSLLRGLA--SRKPVILAGGLTPDNVAEAIRLVRPYGVDVSSGVETSPGI 190 (203)
T ss_pred CCCcceEChHHhhccc--cCCCEEEECCCChHHHHHHHHhcCCCEEEcCCcccCCCCC
Confidence 23344677777766 579999999999999999996 7999999999976 64
|
Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes. |
| >PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.7e-07 Score=81.61 Aligned_cols=180 Identities=16% Similarity=0.154 Sum_probs=110.8
Q ss_pred CCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHHHHHHHHcCccceecc
Q psy9039 43 PPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQAAGLDFIRAE 122 (251)
Q Consensus 43 ~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g~~Fir~~ 122 (251)
+.+.+.|+ |.+.+.+..+. +.. .+ .....++++++.++ .|+-+..-..+ .+...-+...|++.+-..
T Consensus 37 ~~~~~~g~-~~i~v~dld~~-~~g----~~----~~~~~i~~i~~~~~--~pv~~~GGI~~-~ed~~~~~~~Ga~~vilg 103 (233)
T PRK00748 37 KAWEDQGA-KWLHLVDLDGA-KAG----KP----VNLELIEAIVKAVD--IPVQVGGGIRS-LETVEALLDAGVSRVIIG 103 (233)
T ss_pred HHHHHcCC-CEEEEEeCCcc-ccC----Cc----ccHHHHHHHHHHCC--CCEEEcCCcCC-HHHHHHHHHcCCCEEEEC
Confidence 56778999 99998766433 111 00 13567778888777 78777655555 455555556677665542
Q ss_pred cccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHh----hccCCCCCCcccHHHHHHHhhhccccEEEecCCCCC
Q psy9039 123 SFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKK----KHSSHAITADVDITETAKAASFFLSDGLIITGNATG 198 (251)
Q Consensus 123 ~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~----k~~~~~~~~~~~i~~~a~~a~~~~~D~v~VTG~~~g 198 (251)
... ..+...+.+..++++. .+.+--|+.. .++.. ..+..+..+.++.....|++.+++|+....
T Consensus 104 ----~~~------l~~~~~l~ei~~~~~~-~i~vsid~k~~~v~~~g~~-~~~~~~~~e~~~~~~~~g~~~ii~~~~~~~ 171 (233)
T PRK00748 104 ----TAA------VKNPELVKEACKKFPG-KIVVGLDARDGKVATDGWL-ETSGVTAEDLAKRFEDAGVKAIIYTDISRD 171 (233)
T ss_pred ----chH------HhCHHHHHHHHHHhCC-CceeeeeccCCEEEEccCe-ecCCCCHHHHHHHHHhcCCCEEEEeeecCc
Confidence 111 1122234444444432 2211102110 02211 012345566666666679999999865322
Q ss_pred ---CCCCHHHHHHHHhcCCCCEEEecCC-ChHhHHHhhc---CCEEEEeceEeecC
Q psy9039 199 ---DPADVSQLMSVKNAVDLPILIGSGV-TSDNVEHYMT---ADALIIGSHFKQGG 247 (251)
Q Consensus 199 ---~~~~~~~l~~vr~~~~~PV~vG~GI-~~~~v~~~~~---ADGvIVGS~~~~~g 247 (251)
...+.+.++++++.+++|++++||| +.+++.++++ ||||++||+|..+.
T Consensus 172 g~~~G~d~~~i~~l~~~~~ipvia~GGi~~~~di~~~~~~g~~~gv~vg~a~~~~~ 227 (233)
T PRK00748 172 GTLSGPNVEATRELAAAVPIPVIASGGVSSLDDIKALKGLGAVEGVIVGRALYEGK 227 (233)
T ss_pred CCcCCCCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCccEEEEEHHHHcCC
Confidence 2356899999999999999999999 7899999885 99999999997764
|
|
| >PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.9e-07 Score=82.71 Aligned_cols=181 Identities=18% Similarity=0.197 Sum_probs=111.4
Q ss_pred CCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHHHHHHHHcCccceecc
Q psy9039 43 PPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQAAGLDFIRAE 122 (251)
Q Consensus 43 ~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g~~Fir~~ 122 (251)
+.+.+.|+ |.+.|-+....-.. . ......++++++.+. +|+-+..=... .....-....|++.+-.+
T Consensus 37 ~~~~~~G~-~~i~i~dl~~~~~~-----~----~~~~~~i~~i~~~~~--ipv~~~GGi~s-~~~~~~~l~~Ga~~Viig 103 (253)
T PRK02083 37 KRYNEEGA-DELVFLDITASSEG-----R----DTMLDVVERVAEQVF--IPLTVGGGIRS-VEDARRLLRAGADKVSIN 103 (253)
T ss_pred HHHHHcCC-CEEEEEeCCccccc-----C----cchHHHHHHHHHhCC--CCEEeeCCCCC-HHHHHHHHHcCCCEEEEC
Confidence 55668899 99988655431111 1 124567788888877 78777754433 333333344566655432
Q ss_pred cccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHh---------hccCCCCCCcccHHHHHHHhhhccccEEEec
Q psy9039 123 SFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKK---------KHSSHAITADVDITETAKAASFFLSDGLIIT 193 (251)
Q Consensus 123 ~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~---------k~~~~~~~~~~~i~~~a~~a~~~~~D~v~VT 193 (251)
. + ...+...+.+..+.++.+.+.+--|+.. +........+.+..+.++.+...|+|.+++|
T Consensus 104 t---------~-~l~~p~~~~ei~~~~g~~~iv~slD~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~ii~~ 173 (253)
T PRK02083 104 S---------A-AVANPELISEAADRFGSQCIVVAIDAKRDPEPGRWEVYTHGGRKPTGLDAVEWAKEVEELGAGEILLT 173 (253)
T ss_pred h---------h-HhhCcHHHHHHHHHcCCCCEEEEEEeccCCCCCCEEEEEcCCceecCCCHHHHHHHHHHcCCCEEEEc
Confidence 1 1 1123455667777776444433223221 1000001123355566666666799999997
Q ss_pred CCC---CCCCCCHHHHHHHHhcCCCCEEEecCC-ChHhHHHhhc---CCEEEEeceEeec
Q psy9039 194 GNA---TGDPADVSQLMSVKNAVDLPILIGSGV-TSDNVEHYMT---ADALIIGSHFKQG 246 (251)
Q Consensus 194 G~~---~g~~~~~~~l~~vr~~~~~PV~vG~GI-~~~~v~~~~~---ADGvIVGS~~~~~ 246 (251)
+-. +....+++.++++++.+++||+++||| +.+++.++++ |||+++||+|-.+
T Consensus 174 ~i~~~g~~~g~d~~~i~~~~~~~~ipvia~GGv~s~~d~~~~~~~~G~~gvivg~al~~~ 233 (253)
T PRK02083 174 SMDRDGTKNGYDLELTRAVSDAVNVPVIASGGAGNLEHFVEAFTEGGADAALAASIFHFG 233 (253)
T ss_pred CCcCCCCCCCcCHHHHHHHHhhCCCCEEEECCCCCHHHHHHHHHhCCccEEeEhHHHHcC
Confidence 743 223346889999999999999999999 6899988773 9999999998654
|
|
| >PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed | Back alignment and domain information |
|---|
Probab=98.72 E-value=4.1e-07 Score=77.74 Aligned_cols=68 Identities=24% Similarity=0.268 Sum_probs=53.1
Q ss_pred HHHhhhccccEEEecC-----CCCCCCC--CHHHHHHHHhcCC-CCEEEecCCChHhHHHhhc--CCEEEEeceEeec
Q psy9039 179 AKAASFFLSDGLIITG-----NATGDPA--DVSQLMSVKNAVD-LPILIGSGVTSDNVEHYMT--ADALIIGSHFKQG 246 (251)
Q Consensus 179 a~~a~~~~~D~v~VTG-----~~~g~~~--~~~~l~~vr~~~~-~PV~vG~GI~~~~v~~~~~--ADGvIVGS~~~~~ 246 (251)
+..+...|+|+++++. .+.+..+ .++.++++++..+ +||++.|||+++|+.+++. |||+++||+|.+.
T Consensus 117 ~~~a~~~gaD~v~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~a~GGI~~~~i~~~~~~Ga~gv~~gs~i~~~ 194 (212)
T PRK00043 117 AAAALAAGADYVGVGPIFPTPTKKDAKAPQGLEGLREIRAAVGDIPIVAIGGITPENAPEVLEAGADGVAVVSAITGA 194 (212)
T ss_pred HHHHhHcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhcCCCCEEEECCcCHHHHHHHHHcCCCEEEEeHHhhcC
Confidence 3455556899998743 3333222 2688999988876 9999999999999999986 9999999998764
|
|
| >TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit | Back alignment and domain information |
|---|
Probab=98.70 E-value=3.2e-07 Score=81.39 Aligned_cols=180 Identities=16% Similarity=0.183 Sum_probs=113.8
Q ss_pred CCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHHHHHHHHcCccceecc
Q psy9039 43 PPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQAAGLDFIRAE 122 (251)
Q Consensus 43 ~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g~~Fir~~ 122 (251)
+.+.+.|+ |.+.+-|.....-. ++ ....+++++++.++ +|+-+..=... ...+.-....|++.+-++
T Consensus 37 ~~~~~~G~-~~l~v~Dl~~~~~~-----~~----~n~~~i~~i~~~~~--~pv~~~GGi~s-~~d~~~~~~~Ga~~vivg 103 (254)
T TIGR00735 37 QRYDEEGA-DELVFLDITASSEG-----RT----TMIDVVERTAETVF--IPLTVGGGIKS-IEDVDKLLRAGADKVSIN 103 (254)
T ss_pred HHHHHcCC-CEEEEEcCCccccc-----Ch----hhHHHHHHHHHhcC--CCEEEECCCCC-HHHHHHHHHcCCCEEEEC
Confidence 56678999 99998776644211 11 24567788888877 78777654433 333333344566665432
Q ss_pred cccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHhh------------ccCCCCCCcccHHHHHHHhhhccccEE
Q psy9039 123 SFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKK------------HSSHAITADVDITETAKAASFFLSDGL 190 (251)
Q Consensus 123 ~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~k------------~~~~~~~~~~~i~~~a~~a~~~~~D~v 190 (251)
.. ...+...+.+..++++.+.+.+--|+... ++.. ........+.++.....|+|.+
T Consensus 104 ----t~------~~~~p~~~~~~~~~~~~~~iv~slD~~~g~~~~~~~~~v~i~gw~-~~~~~~~~~~~~~l~~~G~~~i 172 (254)
T TIGR00735 104 ----TA------AVKNPELIYELADRFGSQCIVVAIDAKRVYVNSYCWYEVYIYGGR-ESTGLDAVEWAKEVEKLGAGEI 172 (254)
T ss_pred ----hh------HhhChHHHHHHHHHcCCCCEEEEEEeccCCCCCCccEEEEEeCCc-ccCCCCHHHHHHHHHHcCCCEE
Confidence 11 11234455566677764444332222111 0100 1123455566666666799999
Q ss_pred EecCCCCC---CCCCHHHHHHHHhcCCCCEEEecCC-ChHhHHHhhc---CCEEEEeceEeec
Q psy9039 191 IITGNATG---DPADVSQLMSVKNAVDLPILIGSGV-TSDNVEHYMT---ADALIIGSHFKQG 246 (251)
Q Consensus 191 ~VTG~~~g---~~~~~~~l~~vr~~~~~PV~vG~GI-~~~~v~~~~~---ADGvIVGS~~~~~ 246 (251)
++|+.... ...+.+.++++++.+++||++.||| +++++.+++. +||+++||+|-.+
T Consensus 173 ivt~i~~~g~~~g~~~~~~~~i~~~~~ipvia~GGi~s~~di~~~~~~g~~dgv~~g~a~~~~ 235 (254)
T TIGR00735 173 LLTSMDKDGTKSGYDLELTKAVSEAVKIPVIASGGAGKPEHFYEAFTKGKADAALAASVFHYR 235 (254)
T ss_pred EEeCcCcccCCCCCCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCcceeeEhHHHhCC
Confidence 99886442 2346788999999999999999999 6899998885 9999999998554
|
|
| >cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain | Back alignment and domain information |
|---|
Probab=98.65 E-value=4.3e-07 Score=81.65 Aligned_cols=146 Identities=18% Similarity=0.213 Sum_probs=87.2
Q ss_pred ccEEEEEeeCChH---HHHHHHHHcCccceecccccccccCCCceeecCcch---hH-HHHHhcCCCcchhhhhhHhhcc
Q psy9039 93 VPVGVQILSGCNK---AALATAQAAGLDFIRAESFVFGHMADEGLMNAQAGP---LL-RYRKQIGADNVLVFTDIKKKHS 165 (251)
Q Consensus 93 ~P~Gvn~~~N~~~---~~~~ia~a~g~~Fir~~~~~~~~~~~~Gli~~da~e---~~-~~r~~l~~~~i~i~a~v~~k~~ 165 (251)
.|+++++..++.. .....+...|++++..+..|-......++. -+... ++ ..|+.. ++.++. |-+
T Consensus 99 ~pvi~si~g~~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~~~~~~-~~~~~~~eiv~~vr~~~---~~pv~v----Kl~ 170 (289)
T cd02810 99 QPLIASVGGSSKEDYVELARKIERAGAKALELNLSCPNVGGGRQLG-QDPEAVANLLKAVKAAV---DIPLLV----KLS 170 (289)
T ss_pred CeEEEEeccCCHHHHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccc-cCHHHHHHHHHHHHHcc---CCCEEE----EeC
Confidence 6999999887531 223333345778888764333211111111 12122 22 222222 122221 221
Q ss_pred CCCCCCcccHHHHHHHhhhccccEEEecCCCCCC------------------C------CCHHHHHHHHhcC--CCCEEE
Q psy9039 166 SHAITADVDITETAKAASFFLSDGLIITGNATGD------------------P------ADVSQLMSVKNAV--DLPILI 219 (251)
Q Consensus 166 ~~~~~~~~~i~~~a~~a~~~~~D~v~VTG~~~g~------------------~------~~~~~l~~vr~~~--~~PV~v 219 (251)
.. .+.+.+.++++.+...|+|++.+++...+. . ..++.++++|+.+ ++||+.
T Consensus 171 ~~--~~~~~~~~~a~~l~~~Gad~i~~~~~~~~~~~~~~~~~~~~~~~~~g~sg~~~~~~~~~~v~~i~~~~~~~ipiia 248 (289)
T cd02810 171 PY--FDLEDIVELAKAAERAGADGLTAINTISGRVVDLKTVGPGPKRGTGGLSGAPIRPLALRWVARLAARLQLDIPIIG 248 (289)
T ss_pred CC--CCHHHHHHHHHHHHHcCCCEEEEEcccCccceecccCccccCCCCCccCcHHHHHHHHHHHHHHHHhcCCCCCEEE
Confidence 11 222345666676666799999998642110 0 0245688899888 899999
Q ss_pred ecCC-ChHhHHHhhc--CCEEEEeceEeecCe
Q psy9039 220 GSGV-TSDNVEHYMT--ADALIIGSHFKQGGR 248 (251)
Q Consensus 220 G~GI-~~~~v~~~~~--ADGvIVGS~~~~~g~ 248 (251)
.||| |++++.+++. ||+|.+||++..+|-
T Consensus 249 ~GGI~~~~da~~~l~~GAd~V~vg~a~~~~GP 280 (289)
T cd02810 249 VGGIDSGEDVLEMLMAGASAVQVATALMWDGP 280 (289)
T ss_pred ECCCCCHHHHHHHHHcCccHheEcHHHHhcCc
Confidence 9999 6899999996 999999999998864
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of |
| >cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain | Back alignment and domain information |
|---|
Probab=98.64 E-value=9.3e-07 Score=79.85 Aligned_cols=153 Identities=20% Similarity=0.235 Sum_probs=88.0
Q ss_pred HHHHHHhCCCCccEEEEEeeCChH---HHHHHHHHcCccceecccccccccCCCceeecCcc---hhHHHHHhcCCCcch
Q psy9039 82 CAEIRKVLPPSVPVGVQILSGCNK---AALATAQAAGLDFIRAESFVFGHMADEGLMNAQAG---PLLRYRKQIGADNVL 155 (251)
Q Consensus 82 i~~vr~~~~~~~P~Gvn~~~N~~~---~~~~ia~a~g~~Fir~~~~~~~~~~~~Gli~~da~---e~~~~r~~l~~~~i~ 155 (251)
+++.++..+ .|+++++.-+... .....+...|++++..+..|-..-.-..-+..+.+ ++++.-++.- ++.
T Consensus 81 ~~~~~~~~~--~p~ivsi~g~~~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~~~~~~~~eiv~~vr~~~--~~P 156 (296)
T cd04740 81 LLPWLREFG--TPVIASIAGSTVEEFVEVAEKLADAGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAVKKAT--DVP 156 (296)
T ss_pred HHHHhhcCC--CcEEEEEecCCHHHHHHHHHHHHHcCCCEEEEECCCCCCCCCcccccCCHHHHHHHHHHHHhcc--CCC
Confidence 333333344 6999999877631 12223334577888887443321110011111212 2222222210 223
Q ss_pred hhhhhHhhccCCCCCCcccHHHHHHHhhhccccEEEecCCCC-----------------CC---C----CCHHHHHHHHh
Q psy9039 156 VFTDIKKKHSSHAITADVDITETAKAASFFLSDGLIITGNAT-----------------GD---P----ADVSQLMSVKN 211 (251)
Q Consensus 156 i~a~v~~k~~~~~~~~~~~i~~~a~~a~~~~~D~v~VTG~~~-----------------g~---~----~~~~~l~~vr~ 211 (251)
++. |-+ + ....+.++++.+...|+|++.+++.-. +. + ..++.++++|+
T Consensus 157 v~v----Kl~-~---~~~~~~~~a~~~~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~~~~~~~i~~i~~ 228 (296)
T cd04740 157 VIV----KLT-P---NVTDIVEIARAAEEAGADGLTLINTLKGMAIDIETRKPILGNVTGGLSGPAIKPIALRMVYQVYK 228 (296)
T ss_pred EEE----EeC-C---CchhHHHHHHHHHHcCCCEEEEECCCcccccccccCceeecCCcceecCcccchHHHHHHHHHHH
Confidence 322 211 1 112356677777778999987753211 10 0 02367889999
Q ss_pred cCCCCEEEecCC-ChHhHHHhhc--CCEEEEeceEeec
Q psy9039 212 AVDLPILIGSGV-TSDNVEHYMT--ADALIIGSHFKQG 246 (251)
Q Consensus 212 ~~~~PV~vG~GI-~~~~v~~~~~--ADGvIVGS~~~~~ 246 (251)
.+++||+..||| +++++.+++. ||+|.+||++..|
T Consensus 229 ~~~ipii~~GGI~~~~da~~~l~~GAd~V~igra~l~~ 266 (296)
T cd04740 229 AVEIPIIGVGGIASGEDALEFLMAGASAVQVGTANFVD 266 (296)
T ss_pred hcCCCEEEECCCCCHHHHHHHHHcCCCEEEEchhhhcC
Confidence 899999999999 7999999996 9999999999885
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. |
| >PLN02334 ribulose-phosphate 3-epimerase | Back alignment and domain information |
|---|
Probab=98.60 E-value=2.6e-07 Score=80.73 Aligned_cols=174 Identities=15% Similarity=0.198 Sum_probs=102.5
Q ss_pred hCCCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHHHHHHHHcCcccee
Q psy9039 41 VLPPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQAAGLDFIR 120 (251)
Q Consensus 41 ~a~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g~~Fir 120 (251)
+++.+.++|+ +.+.+ ..-|.-|.....-|| ..++++|+.+. .|+.+-++.|++......+...|++.+-
T Consensus 25 ~l~~~~~~g~-~~ihl-d~~d~~f~~~~~~g~-------~~~~~l~~~~~--~~~~vhlmv~~p~d~~~~~~~~gad~v~ 93 (229)
T PLN02334 25 EAKRVLDAGA-DWLHV-DVMDGHFVPNLTIGP-------PVVKALRKHTD--APLDCHLMVTNPEDYVPDFAKAGASIFT 93 (229)
T ss_pred HHHHHHHcCC-CEEEE-ecccCCcCCccccCH-------HHHHHHHhcCC--CcEEEEeccCCHHHHHHHHHHcCCCEEE
Confidence 3467788999 99987 333333444332233 45667777766 6889999998765667777788888773
Q ss_pred cccccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHhhccCCCCCCcccHHHHHHHhhhc-cccEEEecCC---C
Q psy9039 121 AESFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSSHAITADVDITETAKAASFF-LSDGLIITGN---A 196 (251)
Q Consensus 121 ~~~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~~~-~~D~v~VTG~---~ 196 (251)
.. .+. . . .....+..+..+..+. .+-+. .+. .+..+..+..... ++|.+++-.. .
T Consensus 94 vH--~~q-~-~----~d~~~~~~~~i~~~g~-~iGls--------~~~----~t~~~~~~~~~~~~~~Dyi~~~~v~pg~ 152 (229)
T PLN02334 94 FH--IEQ-A-S----TIHLHRLIQQIKSAGM-KAGVV--------LNP----GTPVEAVEPVVEKGLVDMVLVMSVEPGF 152 (229)
T ss_pred Ee--ecc-c-c----chhHHHHHHHHHHCCC-eEEEE--------ECC----CCCHHHHHHHHhccCCCEEEEEEEecCC
Confidence 22 110 0 0 0112233444444443 11111 110 0112222222222 2888755221 1
Q ss_pred CCC--CC-CHHHHHHHHhcC-CCCEEEecCCChHhHHHhhc--CCEEEEeceEeec
Q psy9039 197 TGD--PA-DVSQLMSVKNAV-DLPILIGSGVTSDNVEHYMT--ADALIIGSHFKQG 246 (251)
Q Consensus 197 ~g~--~~-~~~~l~~vr~~~-~~PV~vG~GI~~~~v~~~~~--ADGvIVGS~~~~~ 246 (251)
++. .+ ..+.++++|+.. +.|+.+-||||++|+.++.+ ||+++|||++.+.
T Consensus 153 ~~~~~~~~~~~~i~~~~~~~~~~~I~a~GGI~~e~i~~l~~aGad~vvvgsai~~~ 208 (229)
T PLN02334 153 GGQSFIPSMMDKVRALRKKYPELDIEVDGGVGPSTIDKAAEAGANVIVAGSAVFGA 208 (229)
T ss_pred CccccCHHHHHHHHHHHHhCCCCcEEEeCCCCHHHHHHHHHcCCCEEEEChHHhCC
Confidence 222 11 246788888774 68999999999999999996 9999999998753
|
|
| >PRK06512 thiamine-phosphate pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=98.59 E-value=5.8e-07 Score=78.43 Aligned_cols=157 Identities=13% Similarity=0.106 Sum_probs=95.2
Q ss_pred CCCcCCC-CccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHHHHHHHHcCccceec
Q psy9039 43 PPSVPVG-VQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQAAGLDFIRA 121 (251)
Q Consensus 43 ~~l~~~G-v~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g~~Fir~ 121 (251)
+.+.++| + +.|++ ..+.. ... ....++++++.... ..|+.++.|+. ..+|.+.|++.++.
T Consensus 33 ~~al~~G~v-~~vQl--------R~K~l-~~~---~~~~~a~~l~~l~~---~~gv~liINd~---~dlA~~~~adGVHL 93 (221)
T PRK06512 33 RAALQGGDV-ASVIL--------PQYGL-DEA---TFQKQAEKLVPVIQ---EAGAAALIAGD---SRIAGRVKADGLHI 93 (221)
T ss_pred HHHHcCCCc-cEEEE--------eCCCC-CHH---HHHHHHHHHHHHHH---HhCCEEEEeCH---HHHHHHhCCCEEEE
Confidence 5567889 9 99974 22211 222 23344444444332 33455556663 67777777777664
Q ss_pred ccccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHhhccCCCCCCcccHHHHHHHhhhccccEEEecC----CCC
Q psy9039 122 ESFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSSHAITADVDITETAKAASFFLSDGLIITG----NAT 197 (251)
Q Consensus 122 ~~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~~~~~D~v~VTG----~~~ 197 (251)
. .+ ...+...|+.++.. +++. .. ..-+. +.+..|...|+|++++.- +++
T Consensus 94 g--------~~------d~~~~~~r~~~~~~--~iiG-------~s---~~~s~-~~a~~A~~~gaDYv~~Gpv~t~tK~ 146 (221)
T PRK06512 94 E--------GN------LAALAEAIEKHAPK--MIVG-------FG---NLRDR-HGAMEIGELRPDYLFFGKLGADNKP 146 (221)
T ss_pred C--------cc------ccCHHHHHHhcCCC--CEEE-------ec---CCCCH-HHHHHhhhcCCCEEEECCCCCCCCC
Confidence 2 11 12355667777632 2331 10 00122 223445456899987733 333
Q ss_pred CCCC-CHHHHHHHHhcCCCCEEEecCCChHhHHHhhc--CCEEEEeceEee
Q psy9039 198 GDPA-DVSQLMSVKNAVDLPILIGSGVTSDNVEHYMT--ADALIIGSHFKQ 245 (251)
Q Consensus 198 g~~~-~~~~l~~vr~~~~~PV~vG~GI~~~~v~~~~~--ADGvIVGS~~~~ 245 (251)
+.++ .++.++++++.+++||++-|||+++|+.++.. |||+.|-|+|.+
T Consensus 147 ~~~p~gl~~l~~~~~~~~iPvvAIGGI~~~n~~~~~~~GA~giAvisai~~ 197 (221)
T PRK06512 147 EAHPRNLSLAEWWAEMIEIPCIVQAGSDLASAVEVAETGAEFVALERAVFD 197 (221)
T ss_pred CCCCCChHHHHHHHHhCCCCEEEEeCCCHHHHHHHHHhCCCEEEEhHHhhC
Confidence 3222 46788888888899999999999999999996 999999999875
|
|
| >cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa | Back alignment and domain information |
|---|
Probab=98.58 E-value=2.7e-07 Score=82.54 Aligned_cols=170 Identities=18% Similarity=0.190 Sum_probs=104.7
Q ss_pred CCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHHHHHHHHcCccceecc
Q psy9039 43 PPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQAAGLDFIRAE 122 (251)
Q Consensus 43 ~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g~~Fir~~ 122 (251)
+..+++|+ =++++ .--+|.. +-..|-+-.+.-.+-|+++|+.++ +|+-=-.=. ..........+.|++.+. +
T Consensus 22 ~~ae~aga-~~v~~--~~~~~~~-~~~~~~v~R~~~~~~I~~Ik~~V~--iPVIGi~K~-~~~~Ea~~L~eaGvDiID-a 93 (283)
T cd04727 22 RIAEEAGA-VAVMA--LERVPAD-IRAAGGVARMADPKMIKEIMDAVS--IPVMAKVRI-GHFVEAQILEALGVDMID-E 93 (283)
T ss_pred HHHHHcCc-eEEee--eccCchh-hhhcCCeeecCCHHHHHHHHHhCC--CCeEEeeeh-hHHHHHHHHHHcCCCEEe-c
Confidence 66788999 88875 2233443 333455555555678999999988 784322211 112223333456677763 1
Q ss_pred cccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHhhccCCCCCCcccHHHHHHHhhhccccEEEecCC-CC----
Q psy9039 123 SFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSSHAITADVDITETAKAASFFLSDGLIITGN-AT---- 197 (251)
Q Consensus 123 ~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~~~~~D~v~VTG~-~~---- 197 (251)
. ....|....+...++++ ++.+++|+ .++ +.+..+...|+|.+..|+. -|
T Consensus 94 T---------~r~rP~~~~~~~iK~~~---~~l~MAD~------------stl-eEal~a~~~Gad~I~TTl~gyT~~~~ 148 (283)
T cd04727 94 S---------EVLTPADEEHHIDKHKF---KVPFVCGA------------RNL-GEALRRISEGAAMIRTKGEAGTGNVV 148 (283)
T ss_pred c---------CCCCcHHHHHHHHHHHc---CCcEEccC------------CCH-HHHHHHHHCCCCEEEecCCCCCCcHH
Confidence 1 01112111222333333 23333322 233 3456666679999999982 11
Q ss_pred -----------------------------CCCCCHHHHHHHHhcCCCCEE--EecCC-ChHhHHHhhc--CCEEEEeceE
Q psy9039 198 -----------------------------GDPADVSQLMSVKNAVDLPIL--IGSGV-TSDNVEHYMT--ADALIIGSHF 243 (251)
Q Consensus 198 -----------------------------g~~~~~~~l~~vr~~~~~PV~--vG~GI-~~~~v~~~~~--ADGvIVGS~~ 243 (251)
...++++.|+++++..++||+ +-||| |++|+.+++. |||+.|||+|
T Consensus 149 ~~~~~~~~i~~~i~~~~gyt~~t~~~~~~~~~~d~elLk~l~~~~~iPVV~iAeGGI~Tpena~~v~e~GAdgVaVGSAI 228 (283)
T cd04727 149 EAVRHMRAVNGEIRKLQSMSEEELYAVAKEIQAPYELVKETAKLGRLPVVNFAAGGVATPADAALMMQLGADGVFVGSGI 228 (283)
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHhhhcccCCCHHHHHHHHHhcCCCeEEEEeCCCCCHHHHHHHHHcCCCEEEEcHHh
Confidence 123567899999999899997 99999 9999999997 9999999999
Q ss_pred ee
Q psy9039 244 KQ 245 (251)
Q Consensus 244 ~~ 245 (251)
.+
T Consensus 229 ~~ 230 (283)
T cd04727 229 FK 230 (283)
T ss_pred hc
Confidence 75
|
Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings. |
| >PRK08883 ribulose-phosphate 3-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.1e-06 Score=76.62 Aligned_cols=173 Identities=20% Similarity=0.286 Sum_probs=105.7
Q ss_pred HhhCCCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHh-CCCCccEEEEEeeCChHHHHHHHHHcCcc
Q psy9039 39 RKVLPPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKV-LPPSVPVGVQILSGCNKAALATAQAAGLD 117 (251)
Q Consensus 39 ~~~a~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~-~~~~~P~Gvn~~~N~~~~~~~ia~a~g~~ 117 (251)
.++++.|.++|+ |.+-+==+-| =|...+.-||.+ ++++|+. ++ .|+=+-++...|..-+..-...|++
T Consensus 15 ~~~i~~l~~~g~-~~lH~DvmDG-~Fvpn~tfg~~~-------i~~i~~~~~~--~~~dvHLMv~~p~~~i~~~~~~gad 83 (220)
T PRK08883 15 GEDVEKVLAAGA-DVVHFDVMDN-HYVPNLTFGAPI-------CKALRDYGIT--APIDVHLMVKPVDRIIPDFAKAGAS 83 (220)
T ss_pred HHHHHHHHHcCC-CEEEEecccC-cccCccccCHHH-------HHHHHHhCCC--CCEEEEeccCCHHHHHHHHHHhCCC
Confidence 445577888999 9987532222 255555556655 4566665 45 6888888877654444444456777
Q ss_pred ceecccccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHhhccCCCCCCcccHHHHHHHhhhccccEEEecCCCC
Q psy9039 118 FIRAESFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSSHAITADVDITETAKAASFFLSDGLIITGNAT 197 (251)
Q Consensus 118 Fir~~~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~~~~~D~v~VTG~~~ 197 (251)
.+-..... ..+..+.+++-++.|.. .-+. ++ | .|+-+.+..+. ..+|.+.+-+...
T Consensus 84 ~i~~H~Ea----------~~~~~~~l~~ik~~g~k-~Gla--ln-----P-~Tp~~~i~~~l-----~~~D~vlvMtV~P 139 (220)
T PRK08883 84 MITFHVEA----------SEHVDRTLQLIKEHGCQ-AGVV--LN-----P-ATPLHHLEYIM-----DKVDLILLMSVNP 139 (220)
T ss_pred EEEEcccC----------cccHHHHHHHHHHcCCc-EEEE--eC-----C-CCCHHHHHHHH-----HhCCeEEEEEecC
Confidence 76654211 12345666777777752 1111 11 1 12222222221 2467776644333
Q ss_pred CC------CCCHHHHHHHHhcC-----CCCEEEecCCChHhHHHhhc--CCEEEEeceEeec
Q psy9039 198 GD------PADVSQLMSVKNAV-----DLPILIGSGVTSDNVEHYMT--ADALIIGSHFKQG 246 (251)
Q Consensus 198 g~------~~~~~~l~~vr~~~-----~~PV~vG~GI~~~~v~~~~~--ADGvIVGS~~~~~ 246 (251)
|. +...++++++|+.. ++|+.+.|||+++|+.++.+ ||++++||++.+.
T Consensus 140 GfgGq~fi~~~lekI~~l~~~~~~~~~~~~I~vdGGI~~eni~~l~~aGAd~vVvGSaIf~~ 201 (220)
T PRK08883 140 GFGGQSFIPHTLDKLRAVRKMIDESGRDIRLEIDGGVKVDNIREIAEAGADMFVAGSAIFGQ 201 (220)
T ss_pred CCCCceecHhHHHHHHHHHHHHHhcCCCeeEEEECCCCHHHHHHHHHcCCCEEEEeHHHhCC
Confidence 32 23457788887765 38999999999999999996 9999999998653
|
|
| >TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1 | Back alignment and domain information |
|---|
Probab=98.55 E-value=4e-07 Score=81.47 Aligned_cols=172 Identities=22% Similarity=0.264 Sum_probs=108.5
Q ss_pred CCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHHHHHHHHcCccceecc
Q psy9039 43 PPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQAAGLDFIRAE 122 (251)
Q Consensus 43 ~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g~~Fir~~ 122 (251)
+..+++|+ -+|+. .--+|..- -+.|-+...+--+.|+++++.++ +|+---+=. .......+..+.|++++. +
T Consensus 24 ~iae~aga-~avm~--le~~p~d~-r~~ggv~R~~~p~~I~~I~~~V~--iPVig~~ki-gh~~Ea~~L~~~GvDiID-e 95 (287)
T TIGR00343 24 KIAEEAGA-VAVMA--LERVPADI-RASGGVARMSDPKMIKEIMDAVS--IPVMAKVRI-GHFVEAQILEALGVDYID-E 95 (287)
T ss_pred HHHHHcCc-eEEEe--eccCchhh-HhcCCeeecCCHHHHHHHHHhCC--CCEEEEeec-cHHHHHHHHHHcCCCEEE-c
Confidence 66788899 88874 22345432 24555555556678999999988 784333222 223333444567888884 2
Q ss_pred cccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHhhccCCCCCCcccHHHHHHHhhhccccEEEecCC-CCC---
Q psy9039 123 SFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSSHAITADVDITETAKAASFFLSDGLIITGN-ATG--- 198 (251)
Q Consensus 123 ~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~~~~~D~v~VTG~-~~g--- 198 (251)
. -...|..+.+...++++ ++.++||+ .++.+ +..+..-|+|.+..||. -||
T Consensus 96 T---------e~lrPade~~~~~K~~f---~vpfmad~------------~~l~E-Alrai~~GadmI~Tt~e~gTg~v~ 150 (287)
T TIGR00343 96 S---------EVLTPADWTFHIDKKKF---KVPFVCGA------------RDLGE-ALRRINEGAAMIRTKGEAGTGNIV 150 (287)
T ss_pred c---------CCCCcHHHHHHHHHHHc---CCCEEccC------------CCHHH-HHHHHHCCCCEEeccccCCCccHH
Confidence 1 11223222223333333 23444322 34444 34444569999999973 122
Q ss_pred -------------------------------CCCCHHHHHHHHhcCCCCEE--EecCC-ChHhHHHhhc--CCEEEEece
Q psy9039 199 -------------------------------DPADVSQLMSVKNAVDLPIL--IGSGV-TSDNVEHYMT--ADALIIGSH 242 (251)
Q Consensus 199 -------------------------------~~~~~~~l~~vr~~~~~PV~--vG~GI-~~~~v~~~~~--ADGvIVGS~ 242 (251)
..++.++|+++++..++||+ +-||| ||++++.+++ |||+.|||+
T Consensus 151 ~av~hlr~~~~~~~~~~~~~~~~~~~~~a~~~~~~~elLkei~~~~~iPVV~fAiGGI~TPedAa~~melGAdGVaVGSa 230 (287)
T TIGR00343 151 EAVRHMRKINEEIRQIQNMLEEEDLAAVAKELRVPVELLLEVLKLGKLPVVNFAAGGVATPADAALMMQLGADGVFVGSG 230 (287)
T ss_pred HHHHHHHHHHHHHHHHhcccchhHHhhhhcccCCCHHHHHHHHHhCCCCEEEeccCCCCCHHHHHHHHHcCCCEEEEhHH
Confidence 13467889999998899998 99999 9999999997 999999999
Q ss_pred EeecC
Q psy9039 243 FKQGG 247 (251)
Q Consensus 243 ~~~~g 247 (251)
|.+..
T Consensus 231 I~ks~ 235 (287)
T TIGR00343 231 IFKSS 235 (287)
T ss_pred hhcCC
Confidence 97643
|
This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals. |
| >TIGR00693 thiE thiamine-phosphate pyrophosphorylase | Back alignment and domain information |
|---|
Probab=98.53 E-value=1.1e-06 Score=74.42 Aligned_cols=72 Identities=25% Similarity=0.302 Sum_probs=53.1
Q ss_pred cHHHHHHHhhhccccEEEe-----cCCCCCC--CCCHHHHHHHHhcC-CCCEEEecCCChHhHHHhhc--CCEEEEeceE
Q psy9039 174 DITETAKAASFFLSDGLII-----TGNATGD--PADVSQLMSVKNAV-DLPILIGSGVTSDNVEHYMT--ADALIIGSHF 243 (251)
Q Consensus 174 ~i~~~a~~a~~~~~D~v~V-----TG~~~g~--~~~~~~l~~vr~~~-~~PV~vG~GI~~~~v~~~~~--ADGvIVGS~~ 243 (251)
+.++. ..+...|+|++++ |+.+.+. ...++.++++++.. ++||++.|||+++|+.+++. +||+.+||++
T Consensus 105 ~~~e~-~~a~~~g~dyi~~~~v~~t~~k~~~~~~~g~~~l~~~~~~~~~~pv~a~GGI~~~~~~~~~~~G~~gva~~~~i 183 (196)
T TIGR00693 105 NLEEL-AEAEAEGADYIGFGPIFPTPTKKDPAPPAGVELLREIAATSIDIPIVAIGGITLENAAEVLAAGADGVAVVSAI 183 (196)
T ss_pred CHHHH-HHHhHcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhcCCCCEEEECCcCHHHHHHHHHcCCCEEEEhHHh
Confidence 33443 3344468888764 4554442 22578888887765 69999999999999999986 9999999998
Q ss_pred eec
Q psy9039 244 KQG 246 (251)
Q Consensus 244 ~~~ 246 (251)
.+.
T Consensus 184 ~~~ 186 (196)
T TIGR00693 184 MQA 186 (196)
T ss_pred hCC
Confidence 764
|
This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI. |
| >COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.53 E-value=1.3e-06 Score=76.10 Aligned_cols=189 Identities=14% Similarity=0.179 Sum_probs=102.7
Q ss_pred CCCC-cchHHHHHHHHHhhCCCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeC
Q psy9039 24 GPEI-TANMTRLCAEIRKVLPPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSG 102 (251)
Q Consensus 24 ~P~~-~~~~~~i~~~a~~~a~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N 102 (251)
||+- +...+.. +.++++|- |+|+| +|. + -++-..+.+.++++|..++ +|+.+.-.-
T Consensus 23 DP~k~~~~~ei~--------~~~~~~GT-DaImI---GGS---~-----gvt~~~~~~~v~~ik~~~~--lPvilfP~~- 79 (240)
T COG1646 23 DPDKTEEADEIA--------EAAAEAGT-DAIMI---GGS---D-----GVTEENVDNVVEAIKERTD--LPVILFPGS- 79 (240)
T ss_pred CcccccccHHHH--------HHHHHcCC-CEEEE---CCc---c-----cccHHHHHHHHHHHHhhcC--CCEEEecCC-
Confidence 6766 3344444 77889999 99997 332 2 2345568888999998777 787766321
Q ss_pred ChHHHHHHHHHcCccceecccccccccCCCceeecCcchhHHHHHhcCCCcchh---h-------hhhHhhccCCCCCCc
Q psy9039 103 CNKAALATAQAAGLDFIRAESFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLV---F-------TDIKKKHSSHAITAD 172 (251)
Q Consensus 103 ~~~~~~~ia~a~g~~Fir~~~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i---~-------a~v~~k~~~~~~~~~ 172 (251)
. -.+.. +++++-..+. ....+.-+++.-..+..+.-.+++.+.+.. + +.+....-+|. ..
T Consensus 80 ~----~~is~--~aDavff~sv--LNS~n~~~i~gaq~~~a~~~~~~~~e~i~~gYiV~~p~~~va~v~~A~~ip~--~~ 149 (240)
T COG1646 80 P----SGISP--YADAVFFPSV--LNSDNPYWIVGAQVEGAKLVGKLGLEVIPEGYIVVNPDGTVAWVGKAKPIPL--DK 149 (240)
T ss_pred h----hccCc--cCCeEEEEEE--ecCCCcccccchhhhhhHHHHhhhheecceEEEEECCCCceeeecccccCCC--Cc
Confidence 1 11111 1232222110 011122233332222223333333222211 1 00110000221 22
Q ss_pred ccHHHHHHHhh-hccccEEEe-cCCCCCCCCCHHHHHHHHhcCCCCEEEecCC-ChHhHHHhhc--CCEEEEeceEeecC
Q psy9039 173 VDITETAKAAS-FFLSDGLII-TGNATGDPADVSQLMSVKNAVDLPILIGSGV-TSDNVEHYMT--ADALIIGSHFKQGG 247 (251)
Q Consensus 173 ~~i~~~a~~a~-~~~~D~v~V-TG~~~g~~~~~~~l~~vr~~~~~PV~vG~GI-~~~~v~~~~~--ADGvIVGS~~~~~g 247 (251)
+.+...+..|+ ++|--.+-+ -|+..+.+...+.++++++.+ |+++|||| ++|+++++.. ||.+++|+.+.++.
T Consensus 150 ~~iaa~y~la~~~~g~~~~YlEagsga~~Pv~~e~v~~v~~~~--~LivGGGIrs~E~A~~~a~agAD~IVtG~iiee~~ 227 (240)
T COG1646 150 EDIAAYYALAEKYLGMPVVYLEAGSGAGDPVPVEMVSRVLSDT--PLIVGGGIRSPEQAREMAEAGADTIVTGTIIEEDP 227 (240)
T ss_pred HHHHHHHHHHHHHhCCeEEEEEecCCCCCCcCHHHHHHhhccc--eEEEcCCcCCHHHHHHHHHcCCCEEEECceeecCH
Confidence 33344444444 455444333 244456666778888877765 99999999 7999999996 99999999998875
|
|
| >PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional | Back alignment and domain information |
|---|
Probab=98.53 E-value=2.5e-06 Score=76.00 Aligned_cols=180 Identities=18% Similarity=0.156 Sum_probs=106.9
Q ss_pred CCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHHHHHHHHcCccceecc
Q psy9039 43 PPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQAAGLDFIRAE 122 (251)
Q Consensus 43 ~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g~~Fir~~ 122 (251)
+.+.+.|+ |.+.+-+..+.=-. .+ ....+++++.+.+. +|+-+-.=... .+...-....|++.+-.+
T Consensus 37 ~~~~~~g~-~~l~i~Dl~~~~~~----~~-----~n~~~i~~i~~~~~--~pv~~gGGi~s-~~d~~~l~~~G~~~vvig 103 (258)
T PRK01033 37 RIFNEKEV-DELIVLDIDASKRG----SE-----PNYELIENLASECF--MPLCYGGGIKT-LEQAKKIFSLGVEKVSIN 103 (258)
T ss_pred HHHHHcCC-CEEEEEECCCCcCC----Cc-----ccHHHHHHHHHhCC--CCEEECCCCCC-HHHHHHHHHCCCCEEEEC
Confidence 66788999 99987655432000 11 14567778877766 68644321112 222222223344443332
Q ss_pred cccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHhhccC--------C-C-CCCcccHHHHHHHhhhccccEEEe
Q psy9039 123 SFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSS--------H-A-ITADVDITETAKAASFFLSDGLII 192 (251)
Q Consensus 123 ~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~k~~~--------~-~-~~~~~~i~~~a~~a~~~~~D~v~V 192 (251)
. ....+...+.+..++++...+.+ .+..+.+. . + ...+....+.++.....|++.+++
T Consensus 104 ----s------~~~~~~~~~~~~~~~~~~~~i~v--siD~k~g~~~~~~v~~~gw~~~~~~~~~e~~~~~~~~g~~~ii~ 171 (258)
T PRK01033 104 ----T------AALEDPDLITEAAERFGSQSVVV--SIDVKKNLGGKFDVYTHNGTKKLKKDPLELAKEYEALGAGEILL 171 (258)
T ss_pred ----h------HHhcCHHHHHHHHHHhCCCcEEE--EEEEecCCCCcEEEEEcCCeecCCCCHHHHHHHHHHcCCCEEEE
Confidence 1 01123344555566665333211 12222110 0 0 012344566667666789999999
Q ss_pred cCCCC---CCCCCHHHHHHHHhcCCCCEEEecCC-ChHhHHHhh-c--CCEEEEeceEeecC
Q psy9039 193 TGNAT---GDPADVSQLMSVKNAVDLPILIGSGV-TSDNVEHYM-T--ADALIIGSHFKQGG 247 (251)
Q Consensus 193 TG~~~---g~~~~~~~l~~vr~~~~~PV~vG~GI-~~~~v~~~~-~--ADGvIVGS~~~~~g 247 (251)
|+... ...++.+.++++++.+++||+++||| +.+++.+++ . +||+++||+|.-.|
T Consensus 172 ~~i~~~G~~~G~d~~~i~~~~~~~~ipvIasGGv~s~eD~~~l~~~~GvdgVivg~a~~~~~ 233 (258)
T PRK01033 172 NSIDRDGTMKGYDLELLKSFRNALKIPLIALGGAGSLDDIVEAILNLGADAAAAGSLFVFKG 233 (258)
T ss_pred EccCCCCCcCCCCHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHHHHCCCCEEEEcceeeeCc
Confidence 97532 22357899999999999999999999 689999987 4 99999999998764
|
|
| >PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=98.51 E-value=3.4e-06 Score=73.21 Aligned_cols=156 Identities=19% Similarity=0.152 Sum_probs=107.0
Q ss_pred HhhCCCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHHHHHHHHcCccc
Q psy9039 39 RKVLPPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQAAGLDF 118 (251)
Q Consensus 39 ~~~a~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g~~F 118 (251)
++-+++|.++|+ +.||| +|+.|- -.+.++++|+.+++ .-+|.-+..++ ++...|...|++|
T Consensus 30 ~~i~~al~~~Gi-~~iEi------tl~~~~---------~~~~I~~l~~~~p~-~~IGAGTVl~~--~~a~~a~~aGA~F 90 (212)
T PRK05718 30 VPLAKALVAGGL-PVLEV------TLRTPA---------ALEAIRLIAKEVPE-ALIGAGTVLNP--EQLAQAIEAGAQF 90 (212)
T ss_pred HHHHHHHHHcCC-CEEEE------ecCCcc---------HHHHHHHHHHHCCC-CEEEEeeccCH--HHHHHHHHcCCCE
Confidence 333488999999 99987 455541 34567788887775 47899888874 6777888899999
Q ss_pred eecccccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHhhccCCCCCCcccHHHHHHHhhhccccEEEecCCCCC
Q psy9039 119 IRAESFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSSHAITADVDITETAKAASFFLSDGLIITGNATG 198 (251)
Q Consensus 119 ir~~~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~~~~~D~v~VTG~~~g 198 (251)
+=.. + -..++.+++.+.+. .++ | .-.+..+ +..+..+|+|.+.+== .+
T Consensus 91 ivsP----------~----~~~~vi~~a~~~~i---~~i---------P---G~~TptE-i~~a~~~Ga~~vKlFP--a~ 138 (212)
T PRK05718 91 IVSP----------G----LTPPLLKAAQEGPI---PLI---------P---GVSTPSE-LMLGMELGLRTFKFFP--AE 138 (212)
T ss_pred EECC----------C----CCHHHHHHHHHcCC---CEe---------C---CCCCHHH-HHHHHHCCCCEEEEcc--ch
Confidence 7642 0 13367777777654 221 1 1123334 5666678999998821 11
Q ss_pred CCCCHHHHHHHHhcC-CCCEEEecCCChHhHHHhhc--CCEEEEeceEee
Q psy9039 199 DPADVSQLMSVKNAV-DLPILIGSGVTSDNVEHYMT--ADALIIGSHFKQ 245 (251)
Q Consensus 199 ~~~~~~~l~~vr~~~-~~PV~vG~GI~~~~v~~~~~--ADGvIVGS~~~~ 245 (251)
.......++.+|.-. ++|++.-|||+.+|+.++++ +..++.||.|..
T Consensus 139 ~~gg~~~lk~l~~p~p~~~~~ptGGV~~~ni~~~l~ag~v~~vggs~L~~ 188 (212)
T PRK05718 139 ASGGVKMLKALAGPFPDVRFCPTGGISPANYRDYLALPNVLCIGGSWMVP 188 (212)
T ss_pred hccCHHHHHHHhccCCCCeEEEeCCCCHHHHHHHHhCCCEEEEEChHhCC
Confidence 111467888888765 79999999999999999998 455566777753
|
|
| >PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=98.50 E-value=1.2e-06 Score=77.11 Aligned_cols=177 Identities=13% Similarity=0.149 Sum_probs=108.8
Q ss_pred CCCcC-CCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHHHHHHHHcCccceec
Q psy9039 43 PPSVP-VGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQAAGLDFIRA 121 (251)
Q Consensus 43 ~~l~~-~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g~~Fir~ 121 (251)
+.+.+ .|+ |-+.|-...+.--. . .....+++++.+.+. .|+-+-.=... .+...-..+.|++.+-.
T Consensus 38 ~~~~~~~Ga-~~l~ivDLd~a~~~-----~----~~n~~~I~~i~~~~~--~pi~vGGGIrs-~e~v~~~l~~Ga~kvvi 104 (234)
T PRK13587 38 AYYSQFECV-NRIHIVDLIGAKAQ-----H----AREFDYIKSLRRLTT--KDIEVGGGIRT-KSQIMDYFAAGINYCIV 104 (234)
T ss_pred HHHHhccCC-CEEEEEECcccccC-----C----cchHHHHHHHHhhcC--CeEEEcCCcCC-HHHHHHHHHCCCCEEEE
Confidence 44556 699 99987554433111 1 124567778877666 57655433333 34444445566665543
Q ss_pred ccccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHhhccC---C-C-CCCcccHHHHHHHhhhccccEEEecCCC
Q psy9039 122 ESFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSS---H-A-ITADVDITETAKAASFFLSDGLIITGNA 196 (251)
Q Consensus 122 ~~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~k~~~---~-~-~~~~~~i~~~a~~a~~~~~D~v~VTG~~ 196 (251)
+ .. ...+.+.+.+..++++ +. ++-.+..+.+. + + ..++.++.+.++.....++..+++|-..
T Consensus 105 g----t~------a~~~~~~l~~~~~~fg-~~--ivvslD~~~g~v~~~gw~~~~~~~~~~~~~~~~~~g~~~ii~tdi~ 171 (234)
T PRK13587 105 G----TK------GIQDTDWLKEMAHTFP-GR--IYLSVDAYGEDIKVNGWEEDTELNLFSFVRQLSDIPLGGIIYTDIA 171 (234)
T ss_pred C----ch------HhcCHHHHHHHHHHcC-CC--EEEEEEeeCCEEEecCCcccCCCCHHHHHHHHHHcCCCEEEEeccc
Confidence 2 11 1123445566677776 33 22223333321 0 0 1123445666666555788888888753
Q ss_pred C-C--CCCCHHHHHHHHhcCCCCEEEecCC-ChHhHHHhhc--CCEEEEeceEee
Q psy9039 197 T-G--DPADVSQLMSVKNAVDLPILIGSGV-TSDNVEHYMT--ADALIIGSHFKQ 245 (251)
Q Consensus 197 ~-g--~~~~~~~l~~vr~~~~~PV~vG~GI-~~~~v~~~~~--ADGvIVGS~~~~ 245 (251)
. | ..++.++++++++.+++||+++||| +++++.++++ +|+++|||+|.+
T Consensus 172 ~dGt~~G~~~~li~~l~~~~~ipvi~~GGi~s~edi~~l~~~G~~~vivG~a~~~ 226 (234)
T PRK13587 172 KDGKMSGPNFELTGQLVKATTIPVIASGGIRHQQDIQRLASLNVHAAIIGKAAHQ 226 (234)
T ss_pred CcCCCCccCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCCEEEEhHHHHh
Confidence 3 2 3457889999999899999999999 7899999986 999999999987
|
|
| >cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins | Back alignment and domain information |
|---|
Probab=98.50 E-value=2.7e-06 Score=78.27 Aligned_cols=74 Identities=19% Similarity=0.281 Sum_probs=58.6
Q ss_pred cHHHHHHHhhhccccEEEecCCCCCCCC---------------------CHHHHHHHHhcCCCCEEEecCC-ChHhHHHh
Q psy9039 174 DITETAKAASFFLSDGLIITGNATGDPA---------------------DVSQLMSVKNAVDLPILIGSGV-TSDNVEHY 231 (251)
Q Consensus 174 ~i~~~a~~a~~~~~D~v~VTG~~~g~~~---------------------~~~~l~~vr~~~~~PV~vG~GI-~~~~v~~~ 231 (251)
.+.++++.++..|+|++++++...+... .++.+.++++.+++||+..||| |.+++.++
T Consensus 176 ~~~~~a~~l~~~Gadgi~~~nt~~~~~id~~~~~~~~~~glSG~~~~~~al~~v~~v~~~~~ipIig~GGI~s~~Da~e~ 255 (325)
T cd04739 176 ALAHMAKQLDAAGADGLVLFNRFYQPDIDLETLEVVPNLLLSSPAEIRLPLRWIAILSGRVKASLAASGGVHDAEDVVKY 255 (325)
T ss_pred CHHHHHHHHHHcCCCeEEEEcCcCCCCccccccceecCCCcCCccchhHHHHHHHHHHcccCCCEEEECCCCCHHHHHHH
Confidence 4667777777789999999886422111 1355778888889999999999 79999988
Q ss_pred hc--CCEEEEeceEeecC
Q psy9039 232 MT--ADALIIGSHFKQGG 247 (251)
Q Consensus 232 ~~--ADGvIVGS~~~~~g 247 (251)
+. ||+|.|||++..+|
T Consensus 256 l~aGA~~Vqv~ta~~~~g 273 (325)
T cd04739 256 LLAGADVVMTTSALLRHG 273 (325)
T ss_pred HHcCCCeeEEehhhhhcC
Confidence 85 99999999998876
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive. |
| >PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated | Back alignment and domain information |
|---|
Probab=98.50 E-value=3e-06 Score=80.67 Aligned_cols=168 Identities=16% Similarity=0.213 Sum_probs=99.0
Q ss_pred CCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeC-C-hHHHHHHHHHcCcccee
Q psy9039 43 PPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSG-C-NKAALATAQAAGLDFIR 120 (251)
Q Consensus 43 ~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N-~-~~~~~~ia~a~g~~Fir 120 (251)
+.+.++|+ |.|++ |.|.. .....+.++++++..+ .++.+|-+.- + +......|...|++++.
T Consensus 23 ~~~~~~Gv-~~ie~----g~p~~---------~~~~~~~i~~l~~~~~--~~~ii~D~kl~d~g~~~v~~a~~aGAdgV~ 86 (430)
T PRK07028 23 KEAVAGGA-DWIEA----GTPLI---------KSEGMNAIRTLRKNFP--DHTIVADMKTMDTGAIEVEMAAKAGADIVC 86 (430)
T ss_pred HHHHhcCC-cEEEe----CCHHH---------HHhhHHHHHHHHHHCC--CCEEEEEeeeccchHHHHHHHHHcCCCEEE
Confidence 66678999 99975 43332 2223567777877765 4554443110 0 12245666777888877
Q ss_pred cccccccccCCCceeecCcchhHHHHHhcCCCcch-hhhhhHhhccCCCCCCcccHHHHHHHhhhccccEEEecCCCC--
Q psy9039 121 AESFVFGHMADEGLMNAQAGPLLRYRKQIGADNVL-VFTDIKKKHSSHAITADVDITETAKAASFFLSDGLIITGNAT-- 197 (251)
Q Consensus 121 ~~~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~-i~a~v~~k~~~~~~~~~~~i~~~a~~a~~~~~D~v~VTG~~~-- 197 (251)
..... + .....+..++.+++|..-+. ++ +. .+..+.++.+...|+|.+.+.=..+
T Consensus 87 v~g~~-----~----~~~~~~~i~~a~~~G~~~~~g~~------------s~-~t~~e~~~~a~~~GaD~I~~~pg~~~~ 144 (430)
T PRK07028 87 ILGLA-----D----DSTIEDAVRAARKYGVRLMADLI------------NV-PDPVKRAVELEELGVDYINVHVGIDQQ 144 (430)
T ss_pred EecCC-----C----hHHHHHHHHHHHHcCCEEEEEec------------CC-CCHHHHHHHHHhcCCCEEEEEeccchh
Confidence 42000 0 00123455566666652111 11 11 1222233444446888885431111
Q ss_pred -CCCCCHHHHHHHHhcCCCCEEEecCCChHhHHHhhc--CCEEEEeceEeecCe
Q psy9039 198 -GDPADVSQLMSVKNAVDLPILIGSGVTSDNVEHYMT--ADALIIGSHFKQGGR 248 (251)
Q Consensus 198 -g~~~~~~~l~~vr~~~~~PV~vG~GI~~~~v~~~~~--ADGvIVGS~~~~~g~ 248 (251)
......+.++++++..++||++.|||+.+|+.+++. ||++++||+|.+..+
T Consensus 145 ~~~~~~~~~l~~l~~~~~iPI~a~GGI~~~n~~~~l~aGAdgv~vGsaI~~~~d 198 (430)
T PRK07028 145 MLGKDPLELLKEVSEEVSIPIAVAGGLDAETAAKAVAAGADIVIVGGNIIKSAD 198 (430)
T ss_pred hcCCChHHHHHHHHhhCCCcEEEECCCCHHHHHHHHHcCCCEEEEChHHcCCCC
Confidence 112235789999988889999999999999999986 999999999987543
|
|
| >PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional | Back alignment and domain information |
|---|
Probab=98.47 E-value=3.1e-07 Score=82.39 Aligned_cols=172 Identities=20% Similarity=0.239 Sum_probs=104.7
Q ss_pred CCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHHHHHHHHcCccceecc
Q psy9039 43 PPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQAAGLDFIRAE 122 (251)
Q Consensus 43 ~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g~~Fir~~ 122 (251)
+..++.|. |.|++ .-+.|-.. ...|-+-..+--..++++|+.++ +|+-.-.=. .......+..+.|++++. +
T Consensus 31 ~iae~~g~-~~v~~--~~~~psd~-~~~gg~~Rm~~p~~I~aIk~~V~--iPVigk~Ri-gh~~Ea~~L~~~GvDiID-~ 102 (293)
T PRK04180 31 KIAEEAGA-VAVMA--LERVPADI-RAAGGVARMADPKMIEEIMDAVS--IPVMAKARI-GHFVEAQILEALGVDYID-E 102 (293)
T ss_pred HHHHHhCh-HHHHH--ccCCCchH-hhcCCeeecCCHHHHHHHHHhCC--CCeEEeehh-hHHHHHHHHHHcCCCEEe-c
Confidence 55577888 88754 23566543 33443333333356778998888 785443321 112233344567888884 2
Q ss_pred cccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHhhccCCCCCCcccHHHHHHHhhhccccEEEecCCC-CC---
Q psy9039 123 SFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSSHAITADVDITETAKAASFFLSDGLIITGNA-TG--- 198 (251)
Q Consensus 123 ~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~~~~~D~v~VTG~~-~g--- 198 (251)
. -...|..+.....++++ ++.+++| -.++.+ |..+...|+|.+..||.. ||
T Consensus 103 T---------e~lrpad~~~~~~K~~f---~~~fmad------------~~~l~E-Alrai~~GadmI~Ttge~gtg~v~ 157 (293)
T PRK04180 103 S---------EVLTPADEEYHIDKWDF---TVPFVCG------------ARNLGE-ALRRIAEGAAMIRTKGEAGTGNVV 157 (293)
T ss_pred c---------CCCCchHHHHHHHHHHc---CCCEEcc------------CCCHHH-HHHHHHCCCCeeeccCCCCCccHH
Confidence 1 11222222233334443 3344432 234444 444445699999999641 11
Q ss_pred ------------------------------CCCCHHHHHHHHhcCCCCEE--EecCC-ChHhHHHhhc--CCEEEEeceE
Q psy9039 199 ------------------------------DPADVSQLMSVKNAVDLPIL--IGSGV-TSDNVEHYMT--ADALIIGSHF 243 (251)
Q Consensus 199 ------------------------------~~~~~~~l~~vr~~~~~PV~--vG~GI-~~~~v~~~~~--ADGvIVGS~~ 243 (251)
..++.++|+++++..++||+ +-||| ||++++.+++ |||+.|||+|
T Consensus 158 ~av~h~r~~~~~i~~L~gyt~~~~~~~a~~~~~~~elL~ei~~~~~iPVV~~AeGGI~TPedaa~vme~GAdgVaVGSaI 237 (293)
T PRK04180 158 EAVRHMRQINGEIRRLTSMSEDELYTAAKELQAPYELVKEVAELGRLPVVNFAAGGIATPADAALMMQLGADGVFVGSGI 237 (293)
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHhhccccCCCHHHHHHHHHhCCCCEEEEEeCCCCCHHHHHHHHHhCCCEEEEcHHh
Confidence 12456889999998899998 99999 9999999997 9999999999
Q ss_pred eecC
Q psy9039 244 KQGG 247 (251)
Q Consensus 244 ~~~g 247 (251)
.+..
T Consensus 238 ~ks~ 241 (293)
T PRK04180 238 FKSG 241 (293)
T ss_pred hcCC
Confidence 7543
|
|
| >COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.46 E-value=7.4e-06 Score=70.72 Aligned_cols=172 Identities=20% Similarity=0.253 Sum_probs=110.1
Q ss_pred HHhhCCCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCCh-HHHHHHHHHcCc
Q psy9039 38 IRKVLPPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCN-KAALATAQAAGL 116 (251)
Q Consensus 38 a~~~a~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~-~~~~~ia~a~g~ 116 (251)
|++.++...+. + |.|++ |.|.-.. --.+.++++|+.+|+. ++...+=.-+. -.-..+|...|+
T Consensus 18 Ai~~a~~v~~~-~-diiEv----GTpLik~---------eG~~aV~~lr~~~pd~-~IvAD~Kt~D~G~~e~~ma~~aGA 81 (217)
T COG0269 18 AIEIAEEVADY-V-DIIEV----GTPLIKA---------EGMRAVRALRELFPDK-IIVADLKTADAGAIEARMAFEAGA 81 (217)
T ss_pred HHHHHHHhhhc-c-eEEEe----CcHHHHH---------hhHHHHHHHHHHCCCC-eEEeeeeecchhHHHHHHHHHcCC
Confidence 34444656666 9 99975 7766543 2237889999998875 77666554442 222445566788
Q ss_pred cceecccccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHhhccCCCCCCcccHHHHHHHhhhccccEEEe-cCC
Q psy9039 117 DFIRAESFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSSHAITADVDITETAKAASFFLSDGLII-TGN 195 (251)
Q Consensus 117 ~Fir~~~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~~~~~D~v~V-TG~ 195 (251)
+++-+- | +++. +.-....+..++++. .+.-| + ....+..+.++.....|+|.+++ +|.
T Consensus 82 d~~tV~---g--~A~~----~TI~~~i~~A~~~~~---~v~iD--------l-~~~~~~~~~~~~l~~~gvd~~~~H~g~ 140 (217)
T COG0269 82 DWVTVL---G--AADD----ATIKKAIKVAKEYGK---EVQID--------L-IGVWDPEQRAKWLKELGVDQVILHRGR 140 (217)
T ss_pred CEEEEE---e--cCCH----HHHHHHHHHHHHcCC---eEEEE--------e-ecCCCHHHHHHHHHHhCCCEEEEEecc
Confidence 887752 1 1111 113445566666664 22111 1 12234444455555578999877 442
Q ss_pred ---CCCCCCCHHHHHHHHhcCC--CCEEEecCCChHhHHHhhc--CCEEEEeceEeec
Q psy9039 196 ---ATGDPADVSQLMSVKNAVD--LPILIGSGVTSDNVEHYMT--ADALIIGSHFKQG 246 (251)
Q Consensus 196 ---~~g~~~~~~~l~~vr~~~~--~PV~vG~GI~~~~v~~~~~--ADGvIVGS~~~~~ 246 (251)
.+|.....+.+.++|+..+ .+|.+.|||+++++..+.. +|-+|||+++.+.
T Consensus 141 D~q~~G~~~~~~~l~~ik~~~~~g~~vAVaGGI~~~~i~~~~~~~~~ivIvGraIt~a 198 (217)
T COG0269 141 DAQAAGKSWGEDDLEKIKKLSDLGAKVAVAGGITPEDIPLFKGIGADIVIVGRAITGA 198 (217)
T ss_pred cHhhcCCCccHHHHHHHHHhhccCceEEEecCCCHHHHHHHhcCCCCEEEECchhcCC
Confidence 2344445678888888876 7999999999999999997 9999999998653
|
|
| >TIGR00736 nifR3_rel_arch TIM-barrel protein, putative | Back alignment and domain information |
|---|
Probab=98.46 E-value=3.5e-06 Score=73.97 Aligned_cols=164 Identities=15% Similarity=0.123 Sum_probs=99.4
Q ss_pred HHHHHHHHHHHhCCCCccEEEEEeeCChHHHHHHHHH--cCccceecccccccc-cC--CCc-eeecCcchhHHHHHhcC
Q psy9039 77 NMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQA--AGLDFIRAESFVFGH-MA--DEG-LMNAQAGPLLRYRKQIG 150 (251)
Q Consensus 77 a~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a--~g~~Fir~~~~~~~~-~~--~~G-li~~da~e~~~~r~~l~ 150 (251)
.....+.+++ .. .|+.+|+-.+++.....++.. .+++++..|.-|-.. +. ..| -+.-|...+.+.-+.+.
T Consensus 56 ~i~~e~~~~~--~~--~~vivnv~~~~~ee~~~~a~~v~~~~d~IdiN~gCP~~~v~~~g~G~~Ll~dp~~l~~iv~av~ 131 (231)
T TIGR00736 56 YIIEQIKKAE--SR--ALVSVNVRFVDLEEAYDVLLTIAEHADIIEINAHCRQPEITEIGIGQELLKNKELLKEFLTKMK 131 (231)
T ss_pred HHHHHHHHHh--hc--CCEEEEEecCCHHHHHHHHHHHhcCCCEEEEECCCCcHHHcCCCCchhhcCCHHHHHHHHHHHH
Confidence 3444555554 23 599999999875333333322 456777776544221 10 112 11223222322222222
Q ss_pred CCcchhhhhhHhhccCCCCCCcccHHHHHHHhhhccccEEEecCCCCCCC-CCHHHHHHHHhcC-CCCEEEecCC-ChHh
Q psy9039 151 ADNVLVFTDIKKKHSSHAITADVDITETAKAASFFLSDGLIITGNATGDP-ADVSQLMSVKNAV-DLPILIGSGV-TSDN 227 (251)
Q Consensus 151 ~~~i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~~~~~D~v~VTG~~~g~~-~~~~~l~~vr~~~-~~PV~vG~GI-~~~~ 227 (251)
...+.+. .|-... ..+....++++.++..|+|++.|-+...|.+ .+++.|+++++.+ ++||+..||| |.++
T Consensus 132 ~~~~PVs----vKiR~~--~~~~~~~~~a~~l~~aGad~i~Vd~~~~g~~~a~~~~I~~i~~~~~~ipIIgNGgI~s~ed 205 (231)
T TIGR00736 132 ELNKPIF----VKIRGN--CIPLDELIDALNLVDDGFDGIHVDAMYPGKPYADMDLLKILSEEFNDKIIIGNNSIDDIES 205 (231)
T ss_pred cCCCcEE----EEeCCC--CCcchHHHHHHHHHHcCCCEEEEeeCCCCCchhhHHHHHHHHHhcCCCcEEEECCcCCHHH
Confidence 1123332 232111 2334556777877778999999965544432 4678999999998 4999999999 7899
Q ss_pred HHHhhc--CCEEEEeceEeecCeec
Q psy9039 228 VEHYMT--ADALIIGSHFKQGGRTF 250 (251)
Q Consensus 228 v~~~~~--ADGvIVGS~~~~~g~~~ 250 (251)
+.+++. ||||.||++..++-..|
T Consensus 206 a~e~l~~GAd~VmvgR~~l~~~~~~ 230 (231)
T TIGR00736 206 AKEMLKAGADFVSVARAILKGNVEF 230 (231)
T ss_pred HHHHHHhCCCeEEEcHhhccCCcCc
Confidence 999996 99999999998765443
|
Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins. |
| >PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2 | Back alignment and domain information |
|---|
Probab=98.44 E-value=3.9e-06 Score=70.65 Aligned_cols=154 Identities=22% Similarity=0.286 Sum_probs=89.5
Q ss_pred CCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHHHHHHHHcCccceecc
Q psy9039 43 PPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQAAGLDFIRAE 122 (251)
Q Consensus 43 ~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g~~Fir~~ 122 (251)
..+.++|+ +.|.+ .++..+.....+...++.+-. +... .|+.+| + ...+|.+.+++.++..
T Consensus 19 ~~~~~~gv-~~v~l--------R~k~~~~~~~~~~a~~l~~~~-~~~~--~~liin----~---~~~la~~~~~dGvHl~ 79 (180)
T PF02581_consen 19 EAALAAGV-DLVQL--------REKDLSDEELLELARRLAELC-QKYG--VPLIIN----D---RVDLALELGADGVHLG 79 (180)
T ss_dssp HHHHHTT--SEEEE--------E-SSS-HHHHHHHHHHHHHHH-HHTT--GCEEEE----S----HHHHHHCT-SEEEEB
T ss_pred HHHHHCCC-cEEEE--------cCCCCCccHHHHHHHHHHHHh-hcce--EEEEec----C---CHHHHHhcCCCEEEec
Confidence 44567799 99974 333223344444343433333 3345 577666 3 2456666777776642
Q ss_pred cccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHhhccCCCCCCcccHHHHHHHhhhccccEEEecC-----CCC
Q psy9039 123 SFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSSHAITADVDITETAKAASFFLSDGLIITG-----NAT 197 (251)
Q Consensus 123 ~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~~~~~D~v~VTG-----~~~ 197 (251)
. ........|+.++.+. ++. .|.| +.++ ++.+...++|+++++= ++.
T Consensus 80 --------~------~~~~~~~~r~~~~~~~--~ig-----~S~h------~~~e-~~~a~~~g~dYv~~gpvf~T~sk~ 131 (180)
T PF02581_consen 80 --------Q------SDLPPAEARKLLGPDK--IIG-----ASCH------SLEE-AREAEELGADYVFLGPVFPTSSKP 131 (180)
T ss_dssp --------T------TSSSHHHHHHHHTTTS--EEE-----EEES------SHHH-HHHHHHCTTSEEEEETSS--SSSS
T ss_pred --------c------cccchHHhhhhcccce--EEE-----eecC------cHHH-HHHhhhcCCCEEEECCccCCCCCc
Confidence 1 1223555666665421 221 1223 3344 5666666889987743 454
Q ss_pred CCCC-CHHHHHHHHhcCCCCEEEecCCChHhHHHhhc--CCEEEEeceE
Q psy9039 198 GDPA-DVSQLMSVKNAVDLPILIGSGVTSDNVEHYMT--ADALIIGSHF 243 (251)
Q Consensus 198 g~~~-~~~~l~~vr~~~~~PV~vG~GI~~~~v~~~~~--ADGvIVGS~~ 243 (251)
+.++ .++.+.++++..++||++-|||+++|+.++.+ |||+.|.|++
T Consensus 132 ~~~~~g~~~l~~~~~~~~~pv~AlGGI~~~~i~~l~~~Ga~gvAvi~aI 180 (180)
T PF02581_consen 132 GAPPLGLDGLREIARASPIPVYALGGITPENIPELREAGADGVAVISAI 180 (180)
T ss_dssp S-TTCHHHHHHHHHHHTSSCEEEESS--TTTHHHHHHTT-SEEEESHHH
T ss_pred cccccCHHHHHHHHHhCCCCEEEEcCCCHHHHHHHHHcCCCEEEEEeeC
Confidence 4433 36889999999999999999999999999986 9999998864
|
5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D .... |
| >TIGR01182 eda Entner-Doudoroff aldolase | Back alignment and domain information |
|---|
Probab=98.42 E-value=6.1e-06 Score=71.17 Aligned_cols=155 Identities=17% Similarity=0.157 Sum_probs=106.9
Q ss_pred hhCCCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHHHHHHHHcCccce
Q psy9039 40 KVLPPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQAAGLDFI 119 (251)
Q Consensus 40 ~~a~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g~~Fi 119 (251)
+-+++|.++|+ +.+|| +|+.|. -...++++++.+++ +.+|.=+..+ .++...|...|++|+
T Consensus 24 ~~~~al~~~Gi-~~iEi------t~~t~~---------a~~~i~~l~~~~~~-~~vGAGTVl~--~~~a~~a~~aGA~Fi 84 (204)
T TIGR01182 24 PLAKALIEGGL-RVLEV------TLRTPV---------ALDAIRLLRKEVPD-ALIGAGTVLN--PEQLRQAVDAGAQFI 84 (204)
T ss_pred HHHHHHHHcCC-CEEEE------eCCCcc---------HHHHHHHHHHHCCC-CEEEEEeCCC--HHHHHHHHHcCCCEE
Confidence 33488999999 99987 666552 34456777777765 5899998886 466777788999997
Q ss_pred ecccccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHhhccCCCCCCcccHHHHHHHhhhccccEEEecCCCCCC
Q psy9039 120 RAESFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSSHAITADVDITETAKAASFFLSDGLIITGNATGD 199 (251)
Q Consensus 120 r~~~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~~~~~D~v~VTG~~~g~ 199 (251)
=.. + + ..++.+++++.+. ..+ | .-.+ ...+..|..+|+|.+=+==.. .
T Consensus 85 vsP----------~-~---~~~v~~~~~~~~i---~~i---------P---G~~T-ptEi~~A~~~Ga~~vKlFPA~--~ 132 (204)
T TIGR01182 85 VSP----------G-L---TPELAKHAQDHGI---PII---------P---GVAT-PSEIMLALELGITALKLFPAE--V 132 (204)
T ss_pred ECC----------C-C---CHHHHHHHHHcCC---cEE---------C---CCCC-HHHHHHHHHCCCCEEEECCch--h
Confidence 531 1 1 2357777777654 221 1 1123 333466666788887442111 0
Q ss_pred CCCHHHHHHHHhcC-CCCEEEecCCChHhHHHhhc--CCEEEEeceEee
Q psy9039 200 PADVSQLMSVKNAV-DLPILIGSGVTSDNVEHYMT--ADALIIGSHFKQ 245 (251)
Q Consensus 200 ~~~~~~l~~vr~~~-~~PV~vG~GI~~~~v~~~~~--ADGvIVGS~~~~ 245 (251)
-.....++.+|.-. ++|++.-|||+++|+.++++ +.++.+||+|..
T Consensus 133 ~GG~~yikal~~plp~i~~~ptGGV~~~N~~~~l~aGa~~vg~Gs~L~~ 181 (204)
T TIGR01182 133 SGGVKMLKALAGPFPQVRFCPTGGINLANVRDYLAAPNVACGGGSWLVP 181 (204)
T ss_pred cCCHHHHHHHhccCCCCcEEecCCCCHHHHHHHHhCCCEEEEEChhhcC
Confidence 11256788888765 79999999999999999997 999999999965
|
2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida |
| >cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF) | Back alignment and domain information |
|---|
Probab=98.42 E-value=6.2e-06 Score=72.36 Aligned_cols=177 Identities=13% Similarity=0.176 Sum_probs=107.5
Q ss_pred CCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHHHHHHHHcCccceecc
Q psy9039 43 PPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQAAGLDFIRAE 122 (251)
Q Consensus 43 ~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g~~Fir~~ 122 (251)
+.+.+.|+ |-+.|-+..+. ...+ ....+++++.+.+. .|+-+-.=... .+...-....|++-+-.+
T Consensus 42 ~~~~~~g~-~~l~i~DLd~~-~~~~---------~n~~~i~~i~~~~~--~~v~vgGGir~-~edv~~~l~~Ga~~viig 107 (233)
T cd04723 42 RAYKELGF-RGLYIADLDAI-MGRG---------DNDEAIRELAAAWP--LGLWVDGGIRS-LENAQEWLKRGASRVIVG 107 (233)
T ss_pred HHHHHCCC-CEEEEEeCccc-cCCC---------ccHHHHHHHHHhCC--CCEEEecCcCC-HHHHHHHHHcCCCeEEEc
Confidence 66788899 99998766544 1211 13556777777666 56555443333 344444444555443332
Q ss_pred cccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHhhccCC-CCCCcccHHHHHHHhhhccccEEEecCC---CCC
Q psy9039 123 SFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSSH-AITADVDITETAKAASFFLSDGLIITGN---ATG 198 (251)
Q Consensus 123 ~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~k~~~~-~~~~~~~i~~~a~~a~~~~~D~v~VTG~---~~g 198 (251)
+. ...+ +-+.+..++++.. +++..+..+.+.- ......+..+.++....+ ++.+++|-- .++
T Consensus 108 ----t~------~~~~-~~~~~~~~~~~~~--~iivslD~~~~~~~~~~~~~~~~~~~~~~~~~-~~~li~~di~~~G~~ 173 (233)
T cd04723 108 ----TE------TLPS-DDDEDRLAALGEQ--RLVLSLDFRGGQLLKPTDFIGPEELLRRLAKW-PEELIVLDIDRVGSG 173 (233)
T ss_pred ----ce------eccc-hHHHHHHHhcCCC--CeEEEEeccCCeeccccCcCCHHHHHHHHHHh-CCeEEEEEcCccccC
Confidence 11 1112 3345666667642 2322233232200 001234566666655555 888877654 233
Q ss_pred CCCCHHHHHHHHhcCCCCEEEecCC-ChHhHHHhhc--CCEEEEeceEeecC
Q psy9039 199 DPADVSQLMSVKNAVDLPILIGSGV-TSDNVEHYMT--ADALIIGSHFKQGG 247 (251)
Q Consensus 199 ~~~~~~~l~~vr~~~~~PV~vG~GI-~~~~v~~~~~--ADGvIVGS~~~~~g 247 (251)
..++.+.++++.+.+++||++|||| +.+++.+++. +|+|+|||+|-.+.
T Consensus 174 ~g~~~~~~~~i~~~~~ipvi~~GGi~s~edi~~l~~~G~~~vivGsal~~g~ 225 (233)
T cd04723 174 QGPDLELLERLAARADIPVIAAGGVRSVEDLELLKKLGASGALVASALHDGG 225 (233)
T ss_pred CCcCHHHHHHHHHhcCCCEEEeCCCCCHHHHHHHHHcCCCEEEEehHHHcCC
Confidence 4456788999999899999999999 7899999997 99999999986653
|
The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl |
| >cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes | Back alignment and domain information |
|---|
Probab=98.41 E-value=2.6e-06 Score=77.42 Aligned_cols=141 Identities=23% Similarity=0.269 Sum_probs=85.6
Q ss_pred HHHHHhCCCCccEEEEEeeC-ChH---HHHHHHHHcCccceecccccccccCCCceeecCcchhHHHHHhcCCCcchhhh
Q psy9039 83 AEIRKVLPPSVPVGVQILSG-CNK---AALATAQAAGLDFIRAESFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFT 158 (251)
Q Consensus 83 ~~vr~~~~~~~P~Gvn~~~N-~~~---~~~~ia~a~g~~Fir~~~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a 158 (251)
+++|+..+ .|+++|+|.+ ++. .....+...|++++..+.-+- ..|.. .....+.+.++..+. .++
T Consensus 108 ~~i~~~~~--~~~~~ql~~~~~~~~~~~~i~~~~~~g~~~i~l~~~~p----~~~~~-~~~~~i~~l~~~~~~---pvi- 176 (299)
T cd02809 108 EEVAAAAP--GPRWFQLYVPRDREITEDLLRRAEAAGYKALVLTVDTP----VLGRR-LTWDDLAWLRSQWKG---PLI- 176 (299)
T ss_pred HHHHHhcC--CCeEEEEeecCCHHHHHHHHHHHHHcCCCEEEEecCCC----CCCCC-CCHHHHHHHHHhcCC---CEE-
Confidence 45666556 5999999986 321 123444456677666541111 11100 111223344444332 221
Q ss_pred hhHhhccCCCCCCcccHHHHHHHhhhccccEEEecCCC--C--CCCCCHHHHHHHHhcC--CCCEEEecCC-ChHhHHHh
Q psy9039 159 DIKKKHSSHAITADVDITETAKAASFFLSDGLIITGNA--T--GDPADVSQLMSVKNAV--DLPILIGSGV-TSDNVEHY 231 (251)
Q Consensus 159 ~v~~k~~~~~~~~~~~i~~~a~~a~~~~~D~v~VTG~~--~--g~~~~~~~l~~vr~~~--~~PV~vG~GI-~~~~v~~~ 231 (251)
.......+.++.+...|+|+++|+|.. . +..++++.+.++++.. ++||++.||| ++.++.++
T Consensus 177 -----------vK~v~s~~~a~~a~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~ka 245 (299)
T cd02809 177 -----------LKGILTPEDALRAVDAGADGIVVSNHGGRQLDGAPATIDALPEIVAAVGGRIEVLLDGGIRRGTDVLKA 245 (299)
T ss_pred -----------EeecCCHHHHHHHHHCCCCEEEEcCCCCCCCCCCcCHHHHHHHHHHHhcCCCeEEEeCCCCCHHHHHHH
Confidence 011122345677777899999997742 1 1234568888888876 5999999999 79999888
Q ss_pred hc--CCEEEEeceEee
Q psy9039 232 MT--ADALIIGSHFKQ 245 (251)
Q Consensus 232 ~~--ADGvIVGS~~~~ 245 (251)
+. ||+|.+|+.|+.
T Consensus 246 l~lGAd~V~ig~~~l~ 261 (299)
T cd02809 246 LALGADAVLIGRPFLY 261 (299)
T ss_pred HHcCCCEEEEcHHHHH
Confidence 86 999999998874
|
This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. |
| >PRK07259 dihydroorotate dehydrogenase 1B; Reviewed | Back alignment and domain information |
|---|
Probab=98.39 E-value=1e-05 Score=73.36 Aligned_cols=74 Identities=30% Similarity=0.406 Sum_probs=56.8
Q ss_pred cHHHHHHHhhhccccEEEecCCCCC------------------C------CCCHHHHHHHHhcCCCCEEEecCC-ChHhH
Q psy9039 174 DITETAKAASFFLSDGLIITGNATG------------------D------PADVSQLMSVKNAVDLPILIGSGV-TSDNV 228 (251)
Q Consensus 174 ~i~~~a~~a~~~~~D~v~VTG~~~g------------------~------~~~~~~l~~vr~~~~~PV~vG~GI-~~~~v 228 (251)
.+.++++.++..|+|++.+++...+ . +..++.+.++|+.+++||+..||| |++++
T Consensus 170 ~~~~~a~~l~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~p~~l~~v~~i~~~~~ipvi~~GGI~~~~da 249 (301)
T PRK07259 170 DIVEIAKAAEEAGADGLSLINTLKGMAIDIKTRKPILANVTGGLSGPAIKPIALRMVYQVYQAVDIPIIGMGGISSAEDA 249 (301)
T ss_pred hHHHHHHHHHHcCCCEEEEEccccccccccccCceeecCCcCccCCcCcccccHHHHHHHHHhCCCCEEEECCCCCHHHH
Confidence 4556677666779999887542111 0 113577889999999999999999 79999
Q ss_pred HHhhc--CCEEEEeceEeecC
Q psy9039 229 EHYMT--ADALIIGSHFKQGG 247 (251)
Q Consensus 229 ~~~~~--ADGvIVGS~~~~~g 247 (251)
.+++. ||+|.+||++..|-
T Consensus 250 ~~~l~aGAd~V~igr~ll~~P 270 (301)
T PRK07259 250 IEFIMAGASAVQVGTANFYDP 270 (301)
T ss_pred HHHHHcCCCceeEcHHHhcCc
Confidence 99985 99999999998853
|
|
| >PRK07565 dihydroorotate dehydrogenase 2; Reviewed | Back alignment and domain information |
|---|
Probab=98.37 E-value=7.5e-06 Score=75.48 Aligned_cols=154 Identities=17% Similarity=0.204 Sum_probs=90.3
Q ss_pred HHHHHHHHhCCCCccEEEEEeeCChHHHHHH---HHHcCccceeccccc-ccccCCCceeecC-cchhH-HHHHhcCCCc
Q psy9039 80 RLCAEIRKVLPPSVPVGVQILSGCNKAALAT---AQAAGLDFIRAESFV-FGHMADEGLMNAQ-AGPLL-RYRKQIGADN 153 (251)
Q Consensus 80 ~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~i---a~a~g~~Fir~~~~~-~~~~~~~Gli~~d-a~e~~-~~r~~l~~~~ 153 (251)
+.++++++..+ +|+.+++..........+ +...|++++..|..| ....+..|.-.++ ..+++ ..++.. +
T Consensus 91 ~~i~~~~~~~~--~pvi~sI~g~~~~e~~~~a~~~~~agad~ielN~scpp~~~~~~g~~~~~~~~eil~~v~~~~---~ 165 (334)
T PRK07565 91 ELIRRAKEAVD--IPVIASLNGSSAGGWVDYARQIEQAGADALELNIYYLPTDPDISGAEVEQRYLDILRAVKSAV---S 165 (334)
T ss_pred HHHHHHHHhcC--CcEEEEeccCCHHHHHHHHHHHHHcCCCEEEEeCCCCCCCCCCccccHHHHHHHHHHHHHhcc---C
Confidence 35556666666 799999977653222222 223567888876433 1111111110000 11111 122221 2
Q ss_pred chhhhhhHhhccCCCCCCc-ccHHHHHHHhhhccccEEEecCCCCCCCCC---------------------HHHHHHHHh
Q psy9039 154 VLVFTDIKKKHSSHAITAD-VDITETAKAASFFLSDGLIITGNATGDPAD---------------------VSQLMSVKN 211 (251)
Q Consensus 154 i~i~a~v~~k~~~~~~~~~-~~i~~~a~~a~~~~~D~v~VTG~~~g~~~~---------------------~~~l~~vr~ 211 (251)
+.++. |- ++. ..+.++++.++..|+|++.+++...+...+ ++.+.++++
T Consensus 166 iPV~v----Kl-----~p~~~~~~~~a~~l~~~G~dgI~~~n~~~~~~~d~~~~~~~~~~glsg~~~~~~al~~v~~~~~ 236 (334)
T PRK07565 166 IPVAV----KL-----SPYFSNLANMAKRLDAAGADGLVLFNRFYQPDIDLETLEVVPGLVLSTPAELRLPLRWIAILSG 236 (334)
T ss_pred CcEEE----Ee-----CCCchhHHHHHHHHHHcCCCeEEEECCcCCCCcChhhcccccCCCCCCchhhhHHHHHHHHHHh
Confidence 23322 21 111 135677777777899999998764222111 245677888
Q ss_pred cCCCCEEEecCC-ChHhHHHhhc--CCEEEEeceEeecC
Q psy9039 212 AVDLPILIGSGV-TSDNVEHYMT--ADALIIGSHFKQGG 247 (251)
Q Consensus 212 ~~~~PV~vG~GI-~~~~v~~~~~--ADGvIVGS~~~~~g 247 (251)
.+++||+..||| |.+++.+++. ||+|.|||++..+|
T Consensus 237 ~~~ipIig~GGI~s~~Da~e~l~aGA~~V~v~t~~~~~g 275 (334)
T PRK07565 237 RVGADLAATTGVHDAEDVIKMLLAGADVVMIASALLRHG 275 (334)
T ss_pred hcCCCEEEECCCCCHHHHHHHHHcCCCceeeehHHhhhC
Confidence 889999999999 7999999886 99999999999876
|
|
| >PRK02615 thiamine-phosphate pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=98.34 E-value=3.9e-06 Score=77.86 Aligned_cols=156 Identities=16% Similarity=0.149 Sum_probs=95.1
Q ss_pred CCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHHHHHHHHcCccceecc
Q psy9039 43 PPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQAAGLDFIRAE 122 (251)
Q Consensus 43 ~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g~~Fir~~ 122 (251)
..+.++|+ +.|.+ ..+. ........+.+.++++-+... +.++.|+. ..+|.+.+++.++..
T Consensus 164 ~~al~~Gv-~~VQL--------R~K~-~~~~~~~~~a~~L~~l~~~~~------~~lIIND~---vdlAl~~~aDGVHLg 224 (347)
T PRK02615 164 EAALKGGV-TLVQY--------RDKT-ADDRQRLEEAKKLKELCHRYG------ALFIVNDR---VDIALAVDADGVHLG 224 (347)
T ss_pred HHHHHcCC-CEEEE--------CCCC-CCHHHHHHHHHHHHHHHHHhC------CeEEEeCh---HHHHHHcCCCEEEeC
Confidence 44567899 99974 2221 122222333344444444334 44555563 567777777776642
Q ss_pred cccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHhhccCCCCCCcccHHHHHHHhhhccccEEEe-----cCCCC
Q psy9039 123 SFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSSHAITADVDITETAKAASFFLSDGLII-----TGNAT 197 (251)
Q Consensus 123 ~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~~~~~D~v~V-----TG~~~ 197 (251)
...+ .....|+.++.. +++. .|.| +.++ +..|...|+|++++ |.++.
T Consensus 225 --------q~dl------~~~~aR~llg~~--~iIG-----~S~H------s~~e-~~~A~~~GaDYI~lGPvf~T~tKp 276 (347)
T PRK02615 225 --------QEDL------PLAVARQLLGPE--KIIG-----RSTT------NPEE-MAKAIAEGADYIGVGPVFPTPTKP 276 (347)
T ss_pred --------hhhc------CHHHHHHhcCCC--CEEE-----EecC------CHHH-HHHHHHcCCCEEEECCCcCCCCCC
Confidence 2211 123445555542 2221 1222 3333 35555568999876 44454
Q ss_pred CCC-CCHHHHHHHHhcCCCCEEEecCCChHhHHHhhc--CCEEEEeceEee
Q psy9039 198 GDP-ADVSQLMSVKNAVDLPILIGSGVTSDNVEHYMT--ADALIIGSHFKQ 245 (251)
Q Consensus 198 g~~-~~~~~l~~vr~~~~~PV~vG~GI~~~~v~~~~~--ADGvIVGS~~~~ 245 (251)
+.. ..++.++.+++..++||++-|||+++|+.+++. ||||.|+|+|..
T Consensus 277 ~~~~~Gle~l~~~~~~~~iPv~AiGGI~~~ni~~l~~~Ga~gVAvisaI~~ 327 (347)
T PRK02615 277 GKAPAGLEYLKYAAKEAPIPWFAIGGIDKSNIPEVLQAGAKRVAVVRAIMG 327 (347)
T ss_pred CCCCCCHHHHHHHHHhCCCCEEEECCCCHHHHHHHHHcCCcEEEEeHHHhC
Confidence 433 357889998888899999999999999999986 999999999875
|
|
| >PRK07695 transcriptional regulator TenI; Provisional | Back alignment and domain information |
|---|
Probab=98.32 E-value=1.1e-05 Score=69.04 Aligned_cols=152 Identities=14% Similarity=0.161 Sum_probs=91.4
Q ss_pred CcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHHHHHHHHcCccceecccc
Q psy9039 45 SVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQAAGLDFIRAESF 124 (251)
Q Consensus 45 l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g~~Fir~~~~ 124 (251)
+.++|+ +.|.+ .++..+. +...+.++++++... + +.-++.|+. ..+|...+++.++..
T Consensus 23 ~~~~g~-~~iql--------R~k~~~~----~~~~~~~~~l~~~~~---~-~~~liin~~---~~la~~~~~~gvHl~-- 80 (201)
T PRK07695 23 QIHSEV-DYIHI--------REREKSA----KELYEGVESLLKKGV---P-ASKLIINDR---VDIALLLNIHRVQLG-- 80 (201)
T ss_pred HHhCCC-CEEEE--------cCCCCCH----HHHHHHHHHHHHhCC---C-CCeEEEECH---HHHHHHcCCCEEEeC--
Confidence 568899 99974 2322112 234456666665422 3 345666763 556666666665532
Q ss_pred cccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHhhccCCCCCCcccHHHHHHHhhhccccEEEec-----CCCCCC
Q psy9039 125 VFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSSHAITADVDITETAKAASFFLSDGLIIT-----GNATGD 199 (251)
Q Consensus 125 ~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~~~~~D~v~VT-----G~~~g~ 199 (251)
.. .......|+.++ +..+-. +.+ ++++ ++.+...|+|+++.. .++.+.
T Consensus 81 ------~~------~~~~~~~r~~~~--~~~ig~------s~~------s~e~-a~~a~~~Gadyi~~g~v~~t~~k~~~ 133 (201)
T PRK07695 81 ------YR------SFSVRSVREKFP--YLHVGY------SVH------SLEE-AIQAEKNGADYVVYGHVFPTDCKKGV 133 (201)
T ss_pred ------cc------cCCHHHHHHhCC--CCEEEE------eCC------CHHH-HHHHHHcCCCEEEECCCCCCCCCCCC
Confidence 11 112344555543 222210 111 2333 455555689998542 222222
Q ss_pred C-CCHHHHHHHHhcCCCCEEEecCCChHhHHHhhc--CCEEEEeceEee
Q psy9039 200 P-ADVSQLMSVKNAVDLPILIGSGVTSDNVEHYMT--ADALIIGSHFKQ 245 (251)
Q Consensus 200 ~-~~~~~l~~vr~~~~~PV~vG~GI~~~~v~~~~~--ADGvIVGS~~~~ 245 (251)
+ ...+.++++++.+++||++-|||+++|+.+++. +||+.|||+|..
T Consensus 134 ~~~g~~~l~~~~~~~~ipvia~GGI~~~~~~~~~~~Ga~gvav~s~i~~ 182 (201)
T PRK07695 134 PARGLEELSDIARALSIPVIAIGGITPENTRDVLAAGVSGIAVMSGIFS 182 (201)
T ss_pred CCCCHHHHHHHHHhCCCCEEEEcCCCHHHHHHHHHcCCCEEEEEHHHhc
Confidence 2 246788888888899999999999999999996 999999999875
|
|
| >PRK04302 triosephosphate isomerase; Provisional | Back alignment and domain information |
|---|
Probab=98.32 E-value=3.7e-06 Score=73.22 Aligned_cols=45 Identities=24% Similarity=0.469 Sum_probs=36.7
Q ss_pred HHHHHHHhcC-CCCEEEecCC-ChHhHHHhhc--CCEEEEeceEeecCe
Q psy9039 204 SQLMSVKNAV-DLPILIGSGV-TSDNVEHYMT--ADALIIGSHFKQGGR 248 (251)
Q Consensus 204 ~~l~~vr~~~-~~PV~vG~GI-~~~~v~~~~~--ADGvIVGS~~~~~g~ 248 (251)
+.++.+|+.. ++||++|||| +++++..++. +||++|||++.+-.+
T Consensus 162 ~~~~~ir~~~~~~pvi~GggI~~~e~~~~~~~~gadGvlVGsa~l~~~~ 210 (223)
T PRK04302 162 DAVEAVKKVNPDVKVLCGAGISTGEDVKAALELGADGVLLASGVVKAKD 210 (223)
T ss_pred HHHHHHHhccCCCEEEEECCCCCHHHHHHHHcCCCCEEEEehHHhCCcC
Confidence 3456678755 7999999999 6788888884 999999999987544
|
|
| >PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=98.31 E-value=1.4e-05 Score=68.82 Aligned_cols=155 Identities=12% Similarity=0.084 Sum_probs=106.0
Q ss_pred hhCCCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHHHHHHHHcCccce
Q psy9039 40 KVLPPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQAAGLDFI 119 (251)
Q Consensus 40 ~~a~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g~~Fi 119 (251)
+-+++|.++|+ ..+|| +|+.|. -...++++++..++ .-+|.=+..+ .++...|...|++|+
T Consensus 20 ~ia~al~~gGi-~~iEi------t~~tp~---------a~~~I~~l~~~~~~-~~vGAGTVl~--~e~a~~ai~aGA~Fi 80 (201)
T PRK06015 20 PLARALAAGGL-PAIEI------TLRTPA---------ALDAIRAVAAEVEE-AIVGAGTILN--AKQFEDAAKAGSRFI 80 (201)
T ss_pred HHHHHHHHCCC-CEEEE------eCCCcc---------HHHHHHHHHHHCCC-CEEeeEeCcC--HHHHHHHHHcCCCEE
Confidence 33488999999 99987 677662 33566777777665 4799998886 467788888999997
Q ss_pred ecccccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHhhccCCCCCCcccHHHHHHHhhhccccEEEecCCCCCC
Q psy9039 120 RAESFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSSHAITADVDITETAKAASFFLSDGLIITGNATGD 199 (251)
Q Consensus 120 r~~~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~~~~~D~v~VTG~~~g~ 199 (251)
=... -..++.+++++.+. ..+ | .-.+. ..+..|..+|+|.+=+==.. .
T Consensus 81 vSP~--------------~~~~vi~~a~~~~i---~~i---------P---G~~Tp-tEi~~A~~~Ga~~vK~FPa~--~ 128 (201)
T PRK06015 81 VSPG--------------TTQELLAAANDSDV---PLL---------P---GAATP-SEVMALREEGYTVLKFFPAE--Q 128 (201)
T ss_pred ECCC--------------CCHHHHHHHHHcCC---CEe---------C---CCCCH-HHHHHHHHCCCCEEEECCch--h
Confidence 6320 13457777777664 221 1 11232 33456666788887442110 0
Q ss_pred CCCHHHHHHHHhcC-CCCEEEecCCChHhHHHhhc--CCEEEEeceEee
Q psy9039 200 PADVSQLMSVKNAV-DLPILIGSGVTSDNVEHYMT--ADALIIGSHFKQ 245 (251)
Q Consensus 200 ~~~~~~l~~vr~~~-~~PV~vG~GI~~~~v~~~~~--ADGvIVGS~~~~ 245 (251)
-.....++.+|.-. ++|++.-|||+.+|+.++++ +..+..||++..
T Consensus 129 ~GG~~yikal~~plp~~~l~ptGGV~~~n~~~~l~ag~~~~~ggs~l~~ 177 (201)
T PRK06015 129 AGGAAFLKALSSPLAGTFFCPTGGISLKNARDYLSLPNVVCVGGSWVAP 177 (201)
T ss_pred hCCHHHHHHHHhhCCCCcEEecCCCCHHHHHHHHhCCCeEEEEchhhCC
Confidence 11256788888765 79999999999999999997 677777888854
|
|
| >cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism | Back alignment and domain information |
|---|
Probab=98.31 E-value=2.4e-06 Score=75.18 Aligned_cols=115 Identities=19% Similarity=0.289 Sum_probs=81.9
Q ss_pred cCccceecccccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHhhccCCCCCCcccHHHHHHHhhhccccEEEec
Q psy9039 114 AGLDFIRAESFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSSHAITADVDITETAKAASFFLSDGLIIT 193 (251)
Q Consensus 114 ~g~~Fir~~~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~~~~~D~v~VT 193 (251)
.+-+|+... -.+++-.+.||..+.++..+.+-.++..++ |.++++ ...++.....|+|++-.=
T Consensus 89 ~~~~~iKlE-----Vi~d~~~Llpd~~~tv~aa~~L~~~Gf~vl---------pyc~dd---~~~ar~l~~~G~~~vmPl 151 (248)
T cd04728 89 LGTDWIKLE-----VIGDDKTLLPDPIETLKAAEILVKEGFTVL---------PYCTDD---PVLAKRLEDAGCAAVMPL 151 (248)
T ss_pred hCCCeEEEE-----EecCccccccCHHHHHHHHHHHHHCCCEEE---------EEeCCC---HHHHHHHHHcCCCEeCCC
Confidence 345888864 355777888999999999999833333443 222232 233455555588888442
Q ss_pred C----CCCCCCCCHHHHHHHHhcCCCCEEEecCC-ChHhHHHhhc--CCEEEEeceEeec
Q psy9039 194 G----NATGDPADVSQLMSVKNAVDLPILIGSGV-TSDNVEHYMT--ADALIIGSHFKQG 246 (251)
Q Consensus 194 G----~~~g~~~~~~~l~~vr~~~~~PV~vG~GI-~~~~v~~~~~--ADGvIVGS~~~~~ 246 (251)
| +..|. .+.+.|+.+++..++||++++|| |++++.++++ |||+.|||++.+.
T Consensus 152 g~pIGsg~Gi-~~~~~I~~I~e~~~vpVI~egGI~tpeda~~AmelGAdgVlV~SAIt~a 210 (248)
T cd04728 152 GSPIGSGQGL-LNPYNLRIIIERADVPVIVDAGIGTPSDAAQAMELGADAVLLNTAIAKA 210 (248)
T ss_pred CcCCCCCCCC-CCHHHHHHHHHhCCCcEEEeCCCCCHHHHHHHHHcCCCEEEEChHhcCC
Confidence 2 22232 24788999999889999999999 7999999997 9999999999764
|
ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH). |
| >cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain | Back alignment and domain information |
|---|
Probab=98.31 E-value=5.8e-06 Score=71.58 Aligned_cols=72 Identities=21% Similarity=0.327 Sum_probs=54.8
Q ss_pred HHHHhhhccccEEEecCCCC----CCCCCHHHHHHHHhcCCCCEEEecCC-ChHhHHHhhc---CCEEEEeceEeecCee
Q psy9039 178 TAKAASFFLSDGLIITGNAT----GDPADVSQLMSVKNAVDLPILIGSGV-TSDNVEHYMT---ADALIIGSHFKQGGRT 249 (251)
Q Consensus 178 ~a~~a~~~~~D~v~VTG~~~----g~~~~~~~l~~vr~~~~~PV~vG~GI-~~~~v~~~~~---ADGvIVGS~~~~~g~~ 249 (251)
.++.....|+|.+.+++... ..+.+++.++++|+.+++||++.||| +++++.+++. ||++.+|+++..|-.|
T Consensus 143 ~~~~l~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~i~~~~~ipvi~~Ggi~~~~d~~~~l~~~gad~V~igr~~l~~P~~ 222 (231)
T cd02801 143 LAKALEDAGASALTVHGRTREQRYSGPADWDYIAEIKEAVSIPVIANGDIFSLEDALRCLEQTGVDGVMIGRGALGNPWL 222 (231)
T ss_pred HHHHHHHhCCCEEEECCCCHHHcCCCCCCHHHHHHHHhCCCCeEEEeCCCCCHHHHHHHHHhcCCCEEEEcHHhHhCCHH
Confidence 33333345778887777532 12346788999999999999999999 7999998884 9999999999887543
|
Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present. |
| >cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2 | Back alignment and domain information |
|---|
Probab=98.30 E-value=5.1e-06 Score=76.45 Aligned_cols=75 Identities=17% Similarity=0.243 Sum_probs=58.7
Q ss_pred cHHHHHHHhhhccccEEEecCCCC---------------CCC------CCHHHHHHHHhcC--CCCEEEecCC-ChHhHH
Q psy9039 174 DITETAKAASFFLSDGLIITGNAT---------------GDP------ADVSQLMSVKNAV--DLPILIGSGV-TSDNVE 229 (251)
Q Consensus 174 ~i~~~a~~a~~~~~D~v~VTG~~~---------------g~~------~~~~~l~~vr~~~--~~PV~vG~GI-~~~~v~ 229 (251)
.+.++++.+...|+|++.+++... |.. ..++.+.++|+.+ ++||+.-||| |++++.
T Consensus 217 ~~~~ia~~l~~aGad~I~~~n~~~~~~~~~~~~~~~~~gG~sG~~~~~~~l~~v~~l~~~~~~~ipIi~~GGI~t~~da~ 296 (327)
T cd04738 217 ELEDIADVALEHGVDGIIATNTTISRPGLLRSPLANETGGLSGAPLKERSTEVLRELYKLTGGKIPIIGVGGISSGEDAY 296 (327)
T ss_pred HHHHHHHHHHHcCCcEEEEECCcccccccccccccCCCCccCChhhhHHHHHHHHHHHHHhCCCCcEEEECCCCCHHHHH
Confidence 466677766668999999887421 111 1147788999988 7999999999 799999
Q ss_pred Hhhc--CCEEEEeceEeecCe
Q psy9039 230 HYMT--ADALIIGSHFKQGGR 248 (251)
Q Consensus 230 ~~~~--ADGvIVGS~~~~~g~ 248 (251)
+++. ||+|.|||++..+|-
T Consensus 297 e~l~aGAd~V~vg~~~~~~gP 317 (327)
T cd04738 297 EKIRAGASLVQLYTGLVYEGP 317 (327)
T ss_pred HHHHcCCCHHhccHHHHhhCc
Confidence 9995 999999999987764
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors. |
| >PLN02826 dihydroorotate dehydrogenase | Back alignment and domain information |
|---|
Probab=98.29 E-value=9.6e-06 Score=76.84 Aligned_cols=75 Identities=21% Similarity=0.326 Sum_probs=58.2
Q ss_pred ccHHHHHHHhhhccccEEEecCCCC---------------CC-C--C----CHHHHHHHHhcC--CCCEEEecCC-ChHh
Q psy9039 173 VDITETAKAASFFLSDGLIITGNAT---------------GD-P--A----DVSQLMSVKNAV--DLPILIGSGV-TSDN 227 (251)
Q Consensus 173 ~~i~~~a~~a~~~~~D~v~VTG~~~---------------g~-~--~----~~~~l~~vr~~~--~~PV~vG~GI-~~~~ 227 (251)
+.+.++++.+...|+|++++|.+-. |. . + .++.+.++++.+ ++||+.-||| |.++
T Consensus 276 ~di~~ia~~a~~~G~dGIi~~NTt~~r~~dl~~~~~~~~~GGlSG~pl~~~sl~~v~~l~~~~~~~ipIIgvGGI~sg~D 355 (409)
T PLN02826 276 EDLEDIAAVALALGIDGLIISNTTISRPDSVLGHPHADEAGGLSGKPLFDLSTEVLREMYRLTRGKIPLVGCGGVSSGED 355 (409)
T ss_pred HHHHHHHHHHHHcCCCEEEEEcccCcCccchhcccccccCCCcCCccccHHHHHHHHHHHHHhCCCCcEEEECCCCCHHH
Confidence 3577888888778999999986311 11 1 1 245677888877 7999999999 7899
Q ss_pred HHHhhc--CCEEEEeceEeecC
Q psy9039 228 VEHYMT--ADALIIGSHFKQGG 247 (251)
Q Consensus 228 v~~~~~--ADGvIVGS~~~~~g 247 (251)
+.+++. |+.|.|+|+|+..|
T Consensus 356 a~e~i~AGAs~VQv~Ta~~~~G 377 (409)
T PLN02826 356 AYKKIRAGASLVQLYTAFAYEG 377 (409)
T ss_pred HHHHHHhCCCeeeecHHHHhcC
Confidence 888885 99999999998866
|
|
| >PRK14024 phosphoribosyl isomerase A; Provisional | Back alignment and domain information |
|---|
Probab=98.28 E-value=1e-05 Score=71.33 Aligned_cols=178 Identities=17% Similarity=0.116 Sum_probs=105.9
Q ss_pred CCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHHHHHHHHcCccceecc
Q psy9039 43 PPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQAAGLDFIRAE 122 (251)
Q Consensus 43 ~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g~~Fir~~ 122 (251)
+.+.+.|+ |-|.|-...+.- . .+ ....+++++.+.+. .|+-+-.=... .+...-....|++-+-.+
T Consensus 39 ~~~~~~g~-~~l~ivDLd~~~-g----~~-----~n~~~i~~i~~~~~--~pv~vgGGirs-~edv~~~l~~Ga~kvviG 104 (241)
T PRK14024 39 LAWQRDGA-EWIHLVDLDAAF-G----RG-----SNRELLAEVVGKLD--VKVELSGGIRD-DESLEAALATGCARVNIG 104 (241)
T ss_pred HHHHHCCC-CEEEEEeccccC-C----CC-----ccHHHHHHHHHHcC--CCEEEcCCCCC-HHHHHHHHHCCCCEEEEC
Confidence 55778899 999875544321 1 11 13467788887776 68765543333 444555555666544321
Q ss_pred cccccccCCCceeecCcchhHHHHHhcCCCcchhhhhh---Hhh-ccCCCCCCcccHHHHHHHhhhccccEEEecCCCC-
Q psy9039 123 SFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDI---KKK-HSSHAITADVDITETAKAASFFLSDGLIITGNAT- 197 (251)
Q Consensus 123 ~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v---~~k-~~~~~~~~~~~i~~~a~~a~~~~~D~v~VTG~~~- 197 (251)
+ ....+.+.+.+..++++. .+-+=-|+ ..+ +|.. ....+..+.++.....|++.+++|+...
T Consensus 105 ----s------~~l~~p~l~~~i~~~~~~-~i~vsld~~~~~v~~~Gw~--~~~~~~~~~~~~l~~~G~~~iiv~~~~~~ 171 (241)
T PRK14024 105 ----T------AALENPEWCARVIAEHGD-RVAVGLDVRGHTLAARGWT--RDGGDLWEVLERLDSAGCSRYVVTDVTKD 171 (241)
T ss_pred ----c------hHhCCHHHHHHHHHHhhh-hEEEEEEEeccEeccCCee--ecCccHHHHHHHHHhcCCCEEEEEeecCC
Confidence 1 111233334444444432 21110011 011 1111 1223445556666667999999988532
Q ss_pred --CCCCCHHHHHHHHhcCCCCEEEecCC-ChHhHHHhh----c-CCEEEEeceEeecC
Q psy9039 198 --GDPADVSQLMSVKNAVDLPILIGSGV-TSDNVEHYM----T-ADALIIGSHFKQGG 247 (251)
Q Consensus 198 --g~~~~~~~l~~vr~~~~~PV~vG~GI-~~~~v~~~~----~-ADGvIVGS~~~~~g 247 (251)
...++++.++++++.+++||+++||| |.+++.++. . +|||++|++|..+.
T Consensus 172 g~~~G~d~~~i~~i~~~~~ipviasGGi~s~~D~~~l~~~~~~GvdgV~igra~~~g~ 229 (241)
T PRK14024 172 GTLTGPNLELLREVCARTDAPVVASGGVSSLDDLRALAELVPLGVEGAIVGKALYAGA 229 (241)
T ss_pred CCccCCCHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHhhhccCCccEEEEeHHHHcCC
Confidence 22357899999999999999999999 789988763 3 99999999997664
|
|
| >PF01884 PcrB: PcrB family; InterPro: IPR008205 This entry represents geranylgeranylglyceryl phosphate (GGGP) synthase, which is a prenyltransferase that catalyses the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P) | Back alignment and domain information |
|---|
Probab=98.28 E-value=1.8e-06 Score=75.55 Aligned_cols=65 Identities=17% Similarity=0.457 Sum_probs=43.9
Q ss_pred hccccEEEec-CCCCCCCCCHHHHHHHHhcCCCCEEEecCC-ChHhHHHhhc--CCEEEEeceEeecCe
Q psy9039 184 FFLSDGLIIT-GNATGDPADVSQLMSVKNAVDLPILIGSGV-TSDNVEHYMT--ADALIIGSHFKQGGR 248 (251)
Q Consensus 184 ~~~~D~v~VT-G~~~g~~~~~~~l~~vr~~~~~PV~vG~GI-~~~~v~~~~~--ADGvIVGS~~~~~g~ 248 (251)
++|-..+-+- |+.+-.+...+.++.+|+..+.|+++|||| |+++++++++ ||.++||++|.+|..
T Consensus 151 ~~g~~~iYLEaGSGa~~~v~~~v~~~~~~~~~~~LivGGGIrs~e~A~~~~~aGAD~IVvGn~iee~~~ 219 (230)
T PF01884_consen 151 YLGMPIIYLEAGSGAYGPVPEEVIAAVKKLSDIPLIVGGGIRSPEQAREMAEAGADTIVVGNAIEEDPD 219 (230)
T ss_dssp HTT-SEEEEE--TTSSS-HHHHHHHHHHHSSSSEEEEESS--SHHHHHHHHCTTSSEEEESCHHHHHH-
T ss_pred HhCCCEEEEEeCCCCCCCccHHHHHHHHhcCCccEEEeCCcCCHHHHHHHHHCCCCEEEECCEEEEcch
Confidence 4666666552 243322222344555556679999999999 7999999996 999999999988763
|
This reaction is the first ether-bond-formation step in the biosynthesis of archaeal membrane lipids. This entry also matches putative glycerol-1-phosphate prenyltransferases that may catalyse the transfer of a prenyl moiety to sn-glycerol-1-phosphate (G1P) []. Some of the prokaryotic proteins in this family are related to pcrB. The Staphylococcus aureus chromosomal gene pcrA encodes a protein with significant similarity (40% identity) to two Escherichia coli helicases: the helicase II encoded by the uvrD gene and the Rep helicase. PcrB gene seems to belong to an operon containing at least one other gene, pcrBA, downstream from pcrB []. The PcrB proteins often contain an FMN binding site although the function of these proteins is still unknown.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 1VIZ_A 2F6X_B 2F6U_B 3VKD_A 3VKA_A 3VK5_B 3VKC_B 3VKB_B. |
| >PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes | Back alignment and domain information |
|---|
Probab=98.28 E-value=2.7e-06 Score=74.48 Aligned_cols=180 Identities=18% Similarity=0.260 Sum_probs=111.8
Q ss_pred CCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHHHHHHHHcCccceecc
Q psy9039 43 PPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQAAGLDFIRAE 122 (251)
Q Consensus 43 ~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g~~Fir~~ 122 (251)
+.+.+.|+ |-+.|-+..+.- .| ......+++++.+.++ .|+-+-.=... .+...-....|++-+-.+
T Consensus 36 ~~~~~~g~-~~l~ivDLdaa~------~g---~~~n~~~i~~i~~~~~--~~i~vgGGIrs-~ed~~~ll~~Ga~~Vvig 102 (229)
T PF00977_consen 36 KAFNEQGA-DELHIVDLDAAK------EG---RGSNLELIKEIAKETG--IPIQVGGGIRS-IEDAERLLDAGADRVVIG 102 (229)
T ss_dssp HHHHHTT--SEEEEEEHHHHC------CT---HHHHHHHHHHHHHHSS--SEEEEESSE-S-HHHHHHHHHTT-SEEEES
T ss_pred HHHHHcCC-CEEEEEEccCcc------cC---chhHHHHHHHHHhcCC--ccEEEeCccCc-HHHHHHHHHhCCCEEEeC
Confidence 55678899 999875543220 12 2346678889988877 67766643333 344444445555543322
Q ss_pred cccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHhhcc-------CCCCCCcccHHHHHHHhhhccccEEEecCC
Q psy9039 123 SFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHS-------SHAITADVDITETAKAASFFLSDGLIITGN 195 (251)
Q Consensus 123 ~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~k~~-------~~~~~~~~~i~~~a~~a~~~~~D~v~VTG~ 195 (251)
. ....+.+.+.+..+++|.+.+-+ .+..+++ .. ..++.++.+.++.....|+..+++|--
T Consensus 103 ----t------~~~~~~~~l~~~~~~~g~~~ivv--slD~~~g~~v~~~gw~-~~~~~~~~~~~~~~~~~g~~~ii~tdi 169 (229)
T PF00977_consen 103 ----T------EALEDPELLEELAERYGSQRIVV--SLDARDGYKVATNGWQ-ESSGIDLEEFAKRLEELGAGEIILTDI 169 (229)
T ss_dssp ----H------HHHHCCHHHHHHHHHHGGGGEEE--EEEEEETEEEEETTTT-EEEEEEHHHHHHHHHHTT-SEEEEEET
T ss_pred ----h------HHhhchhHHHHHHHHcCcccEEE--EEEeeeceEEEecCcc-ccCCcCHHHHHHHHHhcCCcEEEEeec
Confidence 1 11234555667777777533322 2322322 11 123467888888877789999999875
Q ss_pred CCC---CCCCHHHHHHHHhcCCCCEEEecCC-ChHhHHHhhc--CCEEEEeceEeecCee
Q psy9039 196 ATG---DPADVSQLMSVKNAVDLPILIGSGV-TSDNVEHYMT--ADALIIGSHFKQGGRT 249 (251)
Q Consensus 196 ~~g---~~~~~~~l~~vr~~~~~PV~vG~GI-~~~~v~~~~~--ADGvIVGS~~~~~g~~ 249 (251)
... ..++.++++++++.++.|++++||| +.+++.++.. +||++|||+| +.|++
T Consensus 170 ~~dGt~~G~d~~~~~~l~~~~~~~viasGGv~~~~Dl~~l~~~G~~gvivg~al-~~g~i 228 (229)
T PF00977_consen 170 DRDGTMQGPDLELLKQLAEAVNIPVIASGGVRSLEDLRELKKAGIDGVIVGSAL-HEGKI 228 (229)
T ss_dssp TTTTTSSS--HHHHHHHHHHHSSEEEEESS--SHHHHHHHHHTTECEEEESHHH-HTTSS
T ss_pred cccCCcCCCCHHHHHHHHHHcCCCEEEecCCCCHHHHHHHHHCCCcEEEEehHh-hCCcc
Confidence 332 3456788999999899999999999 7899999986 9999999999 55543
|
Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F .... |
| >PRK08999 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.26 E-value=2.8e-05 Score=70.60 Aligned_cols=69 Identities=17% Similarity=0.176 Sum_probs=52.9
Q ss_pred cHHHHHHHhhhccccEEEe-----cCCCCCCCC-CHHHHHHHHhcCCCCEEEecCCChHhHHHhhc--CCEEEEeceE
Q psy9039 174 DITETAKAASFFLSDGLII-----TGNATGDPA-DVSQLMSVKNAVDLPILIGSGVTSDNVEHYMT--ADALIIGSHF 243 (251)
Q Consensus 174 ~i~~~a~~a~~~~~D~v~V-----TG~~~g~~~-~~~~l~~vr~~~~~PV~vG~GI~~~~v~~~~~--ADGvIVGS~~ 243 (251)
+.++ +..|...++|++++ |.++.+.++ ..+.++++++..++||++-|||+++|+.++++ |||+.|-|+|
T Consensus 235 ~~~~-~~~a~~~~~dyi~~gpvf~t~tk~~~~~~g~~~~~~~~~~~~~Pv~AiGGI~~~~~~~~~~~g~~gva~i~~~ 311 (312)
T PRK08999 235 DAEE-LARAQRLGVDFAVLSPVQPTASHPGAAPLGWEGFAALIAGVPLPVYALGGLGPGDLEEAREHGAQGIAGIRGL 311 (312)
T ss_pred CHHH-HHHHHhcCCCEEEECCCcCCCCCCCCCCCCHHHHHHHHHhCCCCEEEECCCCHHHHHHHHHhCCCEEEEEEEe
Confidence 3344 34454457888877 444544333 46888999888999999999999999999986 9999999987
|
|
| >PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4 | Back alignment and domain information |
|---|
Probab=98.22 E-value=3e-06 Score=72.65 Aligned_cols=153 Identities=20% Similarity=0.229 Sum_probs=98.7
Q ss_pred CCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHHHHHHHHcCccceecc
Q psy9039 43 PPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQAAGLDFIRAE 122 (251)
Q Consensus 43 ~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g~~Fir~~ 122 (251)
++|.++|+ ..+|| +|+.|. ....+++++++.++ .-+|.=+..+ .++...|...|++|+=..
T Consensus 27 ~al~~gGi-~~iEi------T~~t~~---------a~~~I~~l~~~~p~-~~vGAGTV~~--~e~a~~a~~aGA~FivSP 87 (196)
T PF01081_consen 27 EALIEGGI-RAIEI------TLRTPN---------ALEAIEALRKEFPD-LLVGAGTVLT--AEQAEAAIAAGAQFIVSP 87 (196)
T ss_dssp HHHHHTT---EEEE------ETTSTT---------HHHHHHHHHHHHTT-SEEEEES--S--HHHHHHHHHHT-SEEEES
T ss_pred HHHHHCCC-CEEEE------ecCCcc---------HHHHHHHHHHHCCC-CeeEEEeccC--HHHHHHHHHcCCCEEECC
Confidence 88999999 99987 676652 23456677777675 4799998886 577888889999997632
Q ss_pred cccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHhhccCCCCCCcccHHHHHHHhhhccccEEEecCCCCCCCCC
Q psy9039 123 SFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSSHAITADVDITETAKAASFFLSDGLIITGNATGDPAD 202 (251)
Q Consensus 123 ~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~~~~~D~v~VTG~~~g~~~~ 202 (251)
. -..++.+++++.+..-+. .......+..|..+|+|.+=+==.. .-..
T Consensus 88 ~--------------~~~~v~~~~~~~~i~~iP----------------G~~TptEi~~A~~~G~~~vK~FPA~--~~GG 135 (196)
T PF01081_consen 88 G--------------FDPEVIEYAREYGIPYIP----------------GVMTPTEIMQALEAGADIVKLFPAG--ALGG 135 (196)
T ss_dssp S----------------HHHHHHHHHHTSEEEE----------------EESSHHHHHHHHHTT-SEEEETTTT--TTTH
T ss_pred C--------------CCHHHHHHHHHcCCcccC----------------CcCCHHHHHHHHHCCCCEEEEecch--hcCc
Confidence 1 134577888877652221 1112233455666788887442111 1112
Q ss_pred HHHHHHHHhcC-CCCEEEecCCChHhHHHhhc--CCEEEEeceEeec
Q psy9039 203 VSQLMSVKNAV-DLPILIGSGVTSDNVEHYMT--ADALIIGSHFKQG 246 (251)
Q Consensus 203 ~~~l~~vr~~~-~~PV~vG~GI~~~~v~~~~~--ADGvIVGS~~~~~ 246 (251)
...++.++.-. ++|++.-|||+++|+.++++ +.++.+||++...
T Consensus 136 ~~~ik~l~~p~p~~~~~ptGGV~~~N~~~~l~ag~~~vg~Gs~L~~~ 182 (196)
T PF01081_consen 136 PSYIKALRGPFPDLPFMPTGGVNPDNLAEYLKAGAVAVGGGSWLFPK 182 (196)
T ss_dssp HHHHHHHHTTTTT-EEEEBSS--TTTHHHHHTSTTBSEEEESGGGSH
T ss_pred HHHHHHHhccCCCCeEEEcCCCCHHHHHHHHhCCCEEEEECchhcCH
Confidence 67899888765 79999999999999999997 9999999998653
|
1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A .... |
| >PRK05286 dihydroorotate dehydrogenase 2; Reviewed | Back alignment and domain information |
|---|
Probab=98.22 E-value=3.1e-06 Score=78.45 Aligned_cols=75 Identities=20% Similarity=0.248 Sum_probs=58.6
Q ss_pred cHHHHHHHhhhccccEEEecCCCC---------------CCC--C----CHHHHHHHHhcC--CCCEEEecCC-ChHhHH
Q psy9039 174 DITETAKAASFFLSDGLIITGNAT---------------GDP--A----DVSQLMSVKNAV--DLPILIGSGV-TSDNVE 229 (251)
Q Consensus 174 ~i~~~a~~a~~~~~D~v~VTG~~~---------------g~~--~----~~~~l~~vr~~~--~~PV~vG~GI-~~~~v~ 229 (251)
.+.++++.+...|+|++.+++... +.+ + .++.+.++++.+ ++||+.-||| |++++.
T Consensus 226 ~~~~ia~~l~~~Gadgi~~~nt~~~~~~~~~~~~~~~~gg~SG~~~~~~~l~~v~~l~~~~~~~ipIig~GGI~s~eda~ 305 (344)
T PRK05286 226 ELDDIADLALEHGIDGVIATNTTLSRDGLKGLPNADEAGGLSGRPLFERSTEVIRRLYKELGGRLPIIGVGGIDSAEDAY 305 (344)
T ss_pred HHHHHHHHHHHhCCcEEEEeCCccccccccccccCCCCCCcccHHHHHHHHHHHHHHHHHhCCCCCEEEECCCCCHHHHH
Confidence 466777777778999999988531 111 1 235788898888 7999999999 799999
Q ss_pred Hhhc--CCEEEEeceEeecCe
Q psy9039 230 HYMT--ADALIIGSHFKQGGR 248 (251)
Q Consensus 230 ~~~~--ADGvIVGS~~~~~g~ 248 (251)
+++. ||+|.|||++..+|-
T Consensus 306 e~l~aGAd~V~v~~~~~~~gP 326 (344)
T PRK05286 306 EKIRAGASLVQIYSGLIYEGP 326 (344)
T ss_pred HHHHcCCCHHHHHHHHHHhCc
Confidence 9985 999999999987653
|
|
| >PRK00208 thiG thiazole synthase; Reviewed | Back alignment and domain information |
|---|
Probab=98.21 E-value=5.3e-06 Score=73.07 Aligned_cols=115 Identities=18% Similarity=0.281 Sum_probs=80.5
Q ss_pred cCccceecccccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHhhccCCCCCCcccHHHHHHHhhhccccEEEec
Q psy9039 114 AGLDFIRAESFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSSHAITADVDITETAKAASFFLSDGLIIT 193 (251)
Q Consensus 114 ~g~~Fir~~~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~~~~~D~v~VT 193 (251)
.+-+|+... -.+++-...||..+.++..+.+-.++..++ |.++++ ...++.....|+|++-.=
T Consensus 89 ~~~~~iKlE-----Vi~d~~~llpd~~~tv~aa~~L~~~Gf~vl---------pyc~~d---~~~ak~l~~~G~~~vmPl 151 (250)
T PRK00208 89 LGTNWIKLE-----VIGDDKTLLPDPIETLKAAEILVKEGFVVL---------PYCTDD---PVLAKRLEEAGCAAVMPL 151 (250)
T ss_pred hCCCeEEEE-----EecCCCCCCcCHHHHHHHHHHHHHCCCEEE---------EEeCCC---HHHHHHHHHcCCCEeCCC
Confidence 345888864 355677778888899999998833333333 222332 223455554588888442
Q ss_pred ----CCCCCCCCCHHHHHHHHhcCCCCEEEecCC-ChHhHHHhhc--CCEEEEeceEeec
Q psy9039 194 ----GNATGDPADVSQLMSVKNAVDLPILIGSGV-TSDNVEHYMT--ADALIIGSHFKQG 246 (251)
Q Consensus 194 ----G~~~g~~~~~~~l~~vr~~~~~PV~vG~GI-~~~~v~~~~~--ADGvIVGS~~~~~ 246 (251)
|+..|. .+.+.++.+++..++||++++|| +++++.+.++ |||+.|||++.+.
T Consensus 152 g~pIGsg~gi-~~~~~i~~i~e~~~vpVIveaGI~tpeda~~AmelGAdgVlV~SAItka 210 (250)
T PRK00208 152 GAPIGSGLGL-LNPYNLRIIIEQADVPVIVDAGIGTPSDAAQAMELGADAVLLNTAIAVA 210 (250)
T ss_pred CcCCCCCCCC-CCHHHHHHHHHhcCCeEEEeCCCCCHHHHHHHHHcCCCEEEEChHhhCC
Confidence 222232 24678999998889999999999 7999999997 9999999999763
|
|
| >cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain | Back alignment and domain information |
|---|
Probab=98.16 E-value=3.6e-05 Score=69.91 Aligned_cols=74 Identities=24% Similarity=0.325 Sum_probs=57.4
Q ss_pred cHHHHHHHhhhccccEEEecCCC----------------------CC-C--CC----CHHHHHHHHhcC--CCCEEEecC
Q psy9039 174 DITETAKAASFFLSDGLIITGNA----------------------TG-D--PA----DVSQLMSVKNAV--DLPILIGSG 222 (251)
Q Consensus 174 ~i~~~a~~a~~~~~D~v~VTG~~----------------------~g-~--~~----~~~~l~~vr~~~--~~PV~vG~G 222 (251)
.+.++++.+...|+|+++++.+- .+ . ++ .++.+.++++.+ ++||+.-||
T Consensus 181 ~~~~~a~~~~~~Gadgi~~~Nt~~~~~~id~~~~~~~~~~~~~~~~gg~sG~a~~p~~l~~v~~~~~~~~~~ipIig~GG 260 (299)
T cd02940 181 DIREIARAAKEGGADGVSAINTVNSLMGVDLDGTPPAPGVEGKTTYGGYSGPAVKPIALRAVSQIARAPEPGLPISGIGG 260 (299)
T ss_pred hHHHHHHHHHHcCCCEEEEecccccccccccccCCccccccCCCCcCcccCCCcchHHHHHHHHHHHhcCCCCcEEEECC
Confidence 56677777777899999854311 11 1 11 257899999998 899999999
Q ss_pred C-ChHhHHHhhc--CCEEEEeceEeecC
Q psy9039 223 V-TSDNVEHYMT--ADALIIGSHFKQGG 247 (251)
Q Consensus 223 I-~~~~v~~~~~--ADGvIVGS~~~~~g 247 (251)
| +.+++.+++. ||+|.|||++...|
T Consensus 261 I~~~~da~~~l~aGA~~V~i~ta~~~~g 288 (299)
T cd02940 261 IESWEDAAEFLLLGASVVQVCTAVMNQG 288 (299)
T ss_pred CCCHHHHHHHHHcCCChheEceeecccC
Confidence 9 7899998885 99999999998865
|
DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue. |
| >PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=98.14 E-value=4.8e-05 Score=66.45 Aligned_cols=161 Identities=14% Similarity=0.093 Sum_probs=107.3
Q ss_pred HHHhhCCCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHHHHHHHHcCc
Q psy9039 37 EIRKVLPPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQAAGL 116 (251)
Q Consensus 37 ~a~~~a~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g~ 116 (251)
.+++-+++|.++|+ ..+|| +|+.|. ...+..++.+++++..++ +-+|.=+..| .++...|...|+
T Consensus 28 ~a~~~~~al~~gGi-~~iEi------T~~tp~-----a~~~i~~l~~~~~~~~p~-~~vGaGTVl~--~e~a~~a~~aGA 92 (222)
T PRK07114 28 VAKKVIKACYDGGA-RVFEF------TNRGDF-----AHEVFAELVKYAAKELPG-MILGVGSIVD--AATAALYIQLGA 92 (222)
T ss_pred HHHHHHHHHHHCCC-CEEEE------eCCCCc-----HHHHHHHHHHHHHhhCCC-eEEeeEeCcC--HHHHHHHHHcCC
Confidence 34445588999999 99987 666552 222334444455555554 4799999887 467777888999
Q ss_pred cceecccccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHhhccCCCCCCcccHHHHHHHhhhccccEEEecCCC
Q psy9039 117 DFIRAESFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSSHAITADVDITETAKAASFFLSDGLIITGNA 196 (251)
Q Consensus 117 ~Fir~~~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~~~~~D~v~VTG~~ 196 (251)
+|+=... + ..++.+++++.+. .++ +..-....+..|..+|+|.+=+==..
T Consensus 93 ~FiVsP~-----------~---~~~v~~~~~~~~i---~~i-------------PG~~TpsEi~~A~~~Ga~~vKlFPA~ 142 (222)
T PRK07114 93 NFIVTPL-----------F---NPDIAKVCNRRKV---PYS-------------PGCGSLSEIGYAEELGCEIVKLFPGS 142 (222)
T ss_pred CEEECCC-----------C---CHHHHHHHHHcCC---CEe-------------CCCCCHHHHHHHHHCCCCEEEECccc
Confidence 9976320 1 3447777777654 221 12222333456666788887442111
Q ss_pred CCCCCCHHHHHHHHhcC-CCCEEEecCCCh--HhHHHhhc--CCEEEEeceEee
Q psy9039 197 TGDPADVSQLMSVKNAV-DLPILIGSGVTS--DNVEHYMT--ADALIIGSHFKQ 245 (251)
Q Consensus 197 ~g~~~~~~~l~~vr~~~-~~PV~vG~GI~~--~~v~~~~~--ADGvIVGS~~~~ 245 (251)
.+ ....++.++.-. ++|++.-|||++ +|+.++++ +.++-+||++..
T Consensus 143 ~~---G~~~ikal~~p~p~i~~~ptGGV~~~~~n~~~yl~aGa~avg~Gs~L~~ 193 (222)
T PRK07114 143 VY---GPGFVKAIKGPMPWTKIMPTGGVEPTEENLKKWFGAGVTCVGMGSKLIP 193 (222)
T ss_pred cc---CHHHHHHHhccCCCCeEEeCCCCCcchhcHHHHHhCCCEEEEEChhhcC
Confidence 22 267788888765 799999999987 89999997 999999999853
|
|
| >PRK10415 tRNA-dihydrouridine synthase B; Provisional | Back alignment and domain information |
|---|
Probab=98.13 E-value=2e-05 Score=72.41 Aligned_cols=74 Identities=23% Similarity=0.320 Sum_probs=60.7
Q ss_pred cHHHHHHHhhhccccEEEecCCCCC----CCCCHHHHHHHHhcCCCCEEEecCC-ChHhHHHhhc---CCEEEEeceEee
Q psy9039 174 DITETAKAASFFLSDGLIITGNATG----DPADVSQLMSVKNAVDLPILIGSGV-TSDNVEHYMT---ADALIIGSHFKQ 245 (251)
Q Consensus 174 ~i~~~a~~a~~~~~D~v~VTG~~~g----~~~~~~~l~~vr~~~~~PV~vG~GI-~~~~v~~~~~---ADGvIVGS~~~~ 245 (251)
...++++.++..|+|.+.++|.... ...+++.++++|+.+++||+..||| |++++.++++ ||||.+|.++..
T Consensus 150 ~~~~~a~~le~~G~d~i~vh~rt~~~~~~G~a~~~~i~~ik~~~~iPVI~nGgI~s~~da~~~l~~~gadgVmiGR~~l~ 229 (321)
T PRK10415 150 NCVEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQG 229 (321)
T ss_pred hHHHHHHHHHHhCCCEEEEecCccccccCCCcChHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHhccCCCEEEEChHhhc
Confidence 4556667767789999999885321 2346789999999999999999999 7999999984 999999999887
Q ss_pred cC
Q psy9039 246 GG 247 (251)
Q Consensus 246 ~g 247 (251)
|.
T Consensus 230 nP 231 (321)
T PRK10415 230 RP 231 (321)
T ss_pred CC
Confidence 64
|
|
| >cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain | Back alignment and domain information |
|---|
Probab=98.13 E-value=3e-06 Score=77.41 Aligned_cols=73 Identities=22% Similarity=0.277 Sum_probs=53.9
Q ss_pred HHHHHhhhccccEEEecCCCCCC------------CCCHHHHHHHHhcCCCCEEEecCC-ChHhHHHhhc---CCEEEEe
Q psy9039 177 ETAKAASFFLSDGLIITGNATGD------------PADVSQLMSVKNAVDLPILIGSGV-TSDNVEHYMT---ADALIIG 240 (251)
Q Consensus 177 ~~a~~a~~~~~D~v~VTG~~~g~------------~~~~~~l~~vr~~~~~PV~vG~GI-~~~~v~~~~~---ADGvIVG 240 (251)
++++..+.+|+|.+.+++..... ....+.++++|+.+++||++++|| +++++.+++. ||.|.+|
T Consensus 232 ~la~~l~~~G~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~iPVi~~Ggi~t~~~a~~~l~~g~aD~V~ig 311 (327)
T cd02803 232 EIAKALEEAGVDALHVSGGSYESPPPIIPPPYVPEGYFLELAEKIKKAVKIPVIAVGGIRDPEVAEEILAEGKADLVALG 311 (327)
T ss_pred HHHHHHHHcCCCEEEeCCCCCcccccccCCCCCCcchhHHHHHHHHHHCCCCEEEeCCCCCHHHHHHHHHCCCCCeeeec
Confidence 33444444578888776643211 123467888999999999999999 6999999984 9999999
Q ss_pred ceEeecCee
Q psy9039 241 SHFKQGGRT 249 (251)
Q Consensus 241 S~~~~~g~~ 249 (251)
+.|+.|-.|
T Consensus 312 R~~ladP~l 320 (327)
T cd02803 312 RALLADPDL 320 (327)
T ss_pred HHHHhCccH
Confidence 999877543
|
OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. |
| >COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.12 E-value=4.5e-05 Score=65.81 Aligned_cols=158 Identities=17% Similarity=0.195 Sum_probs=106.6
Q ss_pred HHHHhhCCCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHHHHHHHHcC
Q psy9039 36 AEIRKVLPPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQAAG 115 (251)
Q Consensus 36 ~~a~~~a~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g 115 (251)
|+++.-+++|+++|+ ++||| ||+-|. -.+.|+++++++++ .-+|.=+..|+ .++..+...|
T Consensus 25 e~a~~~a~Ali~gGi-~~IEI------Tl~sp~---------a~e~I~~l~~~~p~-~lIGAGTVL~~--~q~~~a~~aG 85 (211)
T COG0800 25 EEALPLAKALIEGGI-PAIEI------TLRTPA---------ALEAIRALAKEFPE-ALIGAGTVLNP--EQARQAIAAG 85 (211)
T ss_pred HHHHHHHHHHHHcCC-CeEEE------ecCCCC---------HHHHHHHHHHhCcc-cEEccccccCH--HHHHHHHHcC
Confidence 445555689999999 99987 888874 35677888887774 47888888874 6788888999
Q ss_pred ccceecccccccccCCCceeecC-cchhHHHHHhcCCCcchhhhhhHhhccCCCCCCcccHHHHHHHhhhccccEE-Eec
Q psy9039 116 LDFIRAESFVFGHMADEGLMNAQ-AGPLLRYRKQIGADNVLVFTDIKKKHSSHAITADVDITETAKAASFFLSDGL-IIT 193 (251)
Q Consensus 116 ~~Fir~~~~~~~~~~~~Gli~~d-a~e~~~~r~~l~~~~i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~~~~~D~v-~VT 193 (251)
++|+=. |. -.|+.+++...+ +|. .+..-....+..|..+|++.+ ..-
T Consensus 86 a~fiVs---------------P~~~~ev~~~a~~~~---------------ip~-~PG~~TptEi~~Ale~G~~~lK~FP 134 (211)
T COG0800 86 AQFIVS---------------PGLNPEVAKAANRYG---------------IPY-IPGVATPTEIMAALELGASALKFFP 134 (211)
T ss_pred CCEEEC---------------CCCCHHHHHHHHhCC---------------Ccc-cCCCCCHHHHHHHHHcChhheeecC
Confidence 999653 22 234555555554 343 233333344566666677776 334
Q ss_pred CCCCCCCCCHHHHHHHHhcC-CCCEEEecCCChHhHHHhhc--CCEEEEeceEeec
Q psy9039 194 GNATGDPADVSQLMSVKNAV-DLPILIGSGVTSDNVEHYMT--ADALIIGSHFKQG 246 (251)
Q Consensus 194 G~~~g~~~~~~~l~~vr~~~-~~PV~vG~GI~~~~v~~~~~--ADGvIVGS~~~~~ 246 (251)
+...|. ...++.++.-. +++++-=|||+++|+++++. +.++=+||+|...
T Consensus 135 a~~~Gg---~~~~ka~~gP~~~v~~~pTGGVs~~N~~~yla~gv~avG~Gs~l~~~ 187 (211)
T COG0800 135 AEVVGG---PAMLKALAGPFPQVRFCPTGGVSLDNAADYLAAGVVAVGLGSWLVPK 187 (211)
T ss_pred ccccCc---HHHHHHHcCCCCCCeEeecCCCCHHHHHHHHhCCceEEecCccccCh
Confidence 433333 34455444333 79999999999999999997 6666668998753
|
|
| >PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.00014 Score=68.62 Aligned_cols=167 Identities=15% Similarity=0.160 Sum_probs=99.7
Q ss_pred CCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHH-HHHHHHcCccceec
Q psy9039 43 PPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAA-LATAQAAGLDFIRA 121 (251)
Q Consensus 43 ~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~-~~ia~a~g~~Fir~ 121 (251)
+.|.+.++ +.+++ |.|+-.. -| ..+++++|+..++ .|+-+.+...++... ...+...|++++-+
T Consensus 192 ~~l~~~~~-~~iKv----G~~L~~~--~G-------~~iVk~Lr~~~~~-~~I~~DLK~~Di~~~vv~~~a~aGAD~vTV 256 (391)
T PRK13307 192 SQLPKSDH-IIIEA----GTPLIKK--FG-------LEVISKIREVRPD-AFIVADLKTLDTGNLEARMAADATADAVVI 256 (391)
T ss_pred Hhcccccc-eEEEE----CHHHHHH--hC-------HHHHHHHHHhCCC-CeEEEEecccChhhHHHHHHHhcCCCEEEE
Confidence 56666667 76654 5554432 23 4567788877432 588888888874333 33445577787776
Q ss_pred ccccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHhhccCCCCCCcccHHHHHHHhhhccccEEEec-CCCCC-C
Q psy9039 122 ESFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSSHAITADVDITETAKAASFFLSDGLIIT-GNATG-D 199 (251)
Q Consensus 122 ~~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~~~~~D~v~VT-G~~~g-~ 199 (251)
....+ . ....+..+..+++|. ++.-|.. . + .+..+..+.. ..++|.+.+- |...+ .
T Consensus 257 H~ea~----~-----~ti~~ai~~akk~Gi---kvgVD~l-----n---p-~tp~e~i~~l-~~~vD~Vllht~vdp~~~ 314 (391)
T PRK13307 257 SGLAP----I-----STIEKAIHEAQKTGI---YSILDML-----N---V-EDPVKLLESL-KVKPDVVELHRGIDEEGT 314 (391)
T ss_pred eccCC----H-----HHHHHHHHHHHHcCC---EEEEEEc-----C---C-CCHHHHHHHh-hCCCCEEEEccccCCCcc
Confidence 42111 0 013445566666664 2211000 0 1 1222222221 2478887663 44333 2
Q ss_pred CCCHHHHHHHHhc-CCCCEEEecCCChHhHHHhhc--CCEEEEeceEeec
Q psy9039 200 PADVSQLMSVKNA-VDLPILIGSGVTSDNVEHYMT--ADALIIGSHFKQG 246 (251)
Q Consensus 200 ~~~~~~l~~vr~~-~~~PV~vG~GI~~~~v~~~~~--ADGvIVGS~~~~~ 246 (251)
.+..+.++++|+. .+++|.+.|||+++++.++++ ||.+||||++.+.
T Consensus 315 ~~~~~kI~~ikk~~~~~~I~VdGGI~~eti~~l~~aGADivVVGsaIf~a 364 (391)
T PRK13307 315 EHAWGNIKEIKKAGGKILVAVAGGVRVENVEEALKAGADILVVGRAITKS 364 (391)
T ss_pred cchHHHHHHHHHhCCCCcEEEECCcCHHHHHHHHHcCCCEEEEeHHHhCC
Confidence 3345788888885 478999999999999999886 9999999998653
|
|
| >PRK12290 thiE thiamine-phosphate pyrophosphorylase; Reviewed | Back alignment and domain information |
|---|
Probab=98.06 E-value=9.5e-06 Score=76.94 Aligned_cols=157 Identities=13% Similarity=0.124 Sum_probs=92.5
Q ss_pred CCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHHHHHHHHcCccceecc
Q psy9039 43 PPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQAAGLDFIRAE 122 (251)
Q Consensus 43 ~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g~~Fir~~ 122 (251)
+.+.++|+ +.|.+ ..+..+. +.+.+.++++++... .+++.++.|+. ..+|.+.|++-++.
T Consensus 224 e~aL~aGv-~~VQL--------ReK~ls~----~el~~la~~l~~l~~---~~gv~LiIND~---~dlAl~~gAdGVHL- 283 (437)
T PRK12290 224 ERLLPLGI-NTVQL--------RIKDPQQ----ADLEQQIIRAIALGR---EYNAQVFINDY---WQLAIKHQAYGVHL- 283 (437)
T ss_pred HHHHhCCC-CEEEE--------eCCCCCH----HHHHHHHHHHHHHHH---HhCCEEEEECH---HHHHHHcCCCEEEc-
Confidence 56678999 99974 2221122 234444455544433 34566666773 56676777766654
Q ss_pred cccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHhhccCCCCCCcccHHHHHHHhhhccccEEEe-----cCCCC
Q psy9039 123 SFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSSHAITADVDITETAKAASFFLSDGLII-----TGNAT 197 (251)
Q Consensus 123 ~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~~~~~D~v~V-----TG~~~ 197 (251)
|-+.+- ....|+.++.. +++. .|.| +.++. ..|...++|++++ |-++.
T Consensus 284 -------GQeDL~------~~~aR~ilg~~--~iIG-----vStH------s~eEl-~~A~~~gaDYI~lGPIFpT~TK~ 336 (437)
T PRK12290 284 -------GQEDLE------EANLAQLTDAG--IRLG-----LSTH------GYYEL-LRIVQIQPSYIALGHIFPTTTKQ 336 (437)
T ss_pred -------ChHHcc------hhhhhhhcCCC--CEEE-----EecC------CHHHH-HHHhhcCCCEEEECCccCCCCCC
Confidence 333222 22234444431 1121 1222 34443 4444468888876 44443
Q ss_pred C-C-CCCHHHHHHHHhcC---------CCCEEEecCCChHhHHHhhc--CCEEEEeceEeec
Q psy9039 198 G-D-PADVSQLMSVKNAV---------DLPILIGSGVTSDNVEHYMT--ADALIIGSHFKQG 246 (251)
Q Consensus 198 g-~-~~~~~~l~~vr~~~---------~~PV~vG~GI~~~~v~~~~~--ADGvIVGS~~~~~ 246 (251)
. . +..++.++++++.. ++||++-|||+++|+.++++ |+|+.|=|+|.+.
T Consensus 337 ~~~~p~Gl~~L~~~~~l~~~~~~~~~~~iPVVAIGGI~~~Ni~~vl~aGa~GVAVVSAI~~A 398 (437)
T PRK12290 337 MPSKPQGLVRLALYQKLIDTIPYQGQTGFPTVAIGGIDQSNAEQVWQCGVSSLAVVRAITLA 398 (437)
T ss_pred CCCCCCCHHHHHHHHHHhhhccccccCCCCEEEECCcCHHHHHHHHHcCCCEEEEehHhhcC
Confidence 2 2 22467777666544 69999999999999999997 9999999998753
|
|
| >PRK10550 tRNA-dihydrouridine synthase C; Provisional | Back alignment and domain information |
|---|
Probab=98.05 E-value=3.8e-05 Score=70.34 Aligned_cols=148 Identities=16% Similarity=0.144 Sum_probs=90.3
Q ss_pred ccEEEEEeeCChHHHHH----HHHHcCccceeccccccc-cc--CCCc-eeecC---cchhHH-HHHhcCCCcchhhhhh
Q psy9039 93 VPVGVQILSGCNKAALA----TAQAAGLDFIRAESFVFG-HM--ADEG-LMNAQ---AGPLLR-YRKQIGADNVLVFTDI 160 (251)
Q Consensus 93 ~P~Gvn~~~N~~~~~~~----ia~a~g~~Fir~~~~~~~-~~--~~~G-li~~d---a~e~~~-~r~~l~~~~i~i~a~v 160 (251)
.|++++++-|++ ..+. .+...|.+++..|.-|-. .+ ...| -+..+ ..++++ .++..+. ++.+
T Consensus 63 ~p~~vQl~g~~p-~~~~~aA~~~~~~g~d~IdiN~GCP~~~v~~~g~Gs~Ll~~~~~~~eiv~avr~~~~~-~~pV---- 136 (312)
T PRK10550 63 TLVRIQLLGQYP-QWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAMREAVPA-HLPV---- 136 (312)
T ss_pred CcEEEEeccCCH-HHHHHHHHHHHHcCCCEEEEeCCCCchHHhcCCCchHhhcCHHHHHHHHHHHHHhcCC-Ccce----
Confidence 599999999985 3322 334466778877643321 01 1111 12223 222222 2333321 2222
Q ss_pred HhhccCCCCCCcccHHHHHHHhhhccccEEEecCCCCCC----C-CCHHHHHHHHhcCCCCEEEecCC-ChHhHHHhhc-
Q psy9039 161 KKKHSSHAITADVDITETAKAASFFLSDGLIITGNATGD----P-ADVSQLMSVKNAVDLPILIGSGV-TSDNVEHYMT- 233 (251)
Q Consensus 161 ~~k~~~~~~~~~~~i~~~a~~a~~~~~D~v~VTG~~~g~----~-~~~~~l~~vr~~~~~PV~vG~GI-~~~~v~~~~~- 233 (251)
..|...-+ .......++++.++.+|+|.+.|.|..... + .+++.++++|+.+++||+..||| |++++.+++.
T Consensus 137 svKiR~g~-~~~~~~~~~a~~l~~~Gvd~i~Vh~Rt~~~~y~g~~~~~~~i~~ik~~~~iPVi~nGdI~t~~da~~~l~~ 215 (312)
T PRK10550 137 TVKVRLGW-DSGERKFEIADAVQQAGATELVVHGRTKEDGYRAEHINWQAIGEIRQRLTIPVIANGEIWDWQSAQQCMAI 215 (312)
T ss_pred EEEEECCC-CCchHHHHHHHHHHhcCCCEEEECCCCCccCCCCCcccHHHHHHHHhhcCCcEEEeCCcCCHHHHHHHHhc
Confidence 22322211 111224566666666899999998753222 2 26788999999999999999999 7999999883
Q ss_pred --CCEEEEeceEeecC
Q psy9039 234 --ADALIIGSHFKQGG 247 (251)
Q Consensus 234 --ADGvIVGS~~~~~g 247 (251)
||||.+|..+..|-
T Consensus 216 ~g~DgVmiGRg~l~nP 231 (312)
T PRK10550 216 TGCDAVMIGRGALNIP 231 (312)
T ss_pred cCCCEEEEcHHhHhCc
Confidence 99999999887653
|
|
| >PRK11815 tRNA-dihydrouridine synthase A; Provisional | Back alignment and domain information |
|---|
Probab=98.05 E-value=2.1e-05 Score=72.65 Aligned_cols=72 Identities=18% Similarity=0.300 Sum_probs=56.3
Q ss_pred HHHHHHHhhhccccEEEecCCC---CCCC---------CCHHHHHHHHhcC-CCCEEEecCC-ChHhHHHhhc-CCEEEE
Q psy9039 175 ITETAKAASFFLSDGLIITGNA---TGDP---------ADVSQLMSVKNAV-DLPILIGSGV-TSDNVEHYMT-ADALII 239 (251)
Q Consensus 175 i~~~a~~a~~~~~D~v~VTG~~---~g~~---------~~~~~l~~vr~~~-~~PV~vG~GI-~~~~v~~~~~-ADGvIV 239 (251)
+.++++..+..|+|++.|+|.. .|.. ..++.+.++++.+ ++||+..||| |++++.+++. ||||.|
T Consensus 153 ~~~~~~~l~~aG~d~i~vh~Rt~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~~iPVI~nGgI~s~eda~~~l~~aDgVmI 232 (333)
T PRK11815 153 LCDFVDTVAEAGCDTFIVHARKAWLKGLSPKENREIPPLDYDRVYRLKRDFPHLTIEINGGIKTLEEAKEHLQHVDGVMI 232 (333)
T ss_pred HHHHHHHHHHhCCCEEEEcCCchhhcCCCccccccCCCcCHHHHHHHHHhCCCCeEEEECCcCCHHHHHHHHhcCCEEEE
Confidence 3444555555799999998742 1211 2467889999885 8999999999 7999999998 999999
Q ss_pred eceEeec
Q psy9039 240 GSHFKQG 246 (251)
Q Consensus 240 GS~~~~~ 246 (251)
|.++..|
T Consensus 233 GRa~l~n 239 (333)
T PRK11815 233 GRAAYHN 239 (333)
T ss_pred cHHHHhC
Confidence 9988765
|
|
| >cd02911 arch_FMN Archeal FMN-binding domain | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.00012 Score=64.40 Aligned_cols=68 Identities=21% Similarity=0.267 Sum_probs=55.2
Q ss_pred ccHHHHHHHhhhccccEEEecCCCCCCCCCHHHHHHHHhcCCCCEEEecCC-ChHhHHHhhc--CCEEEEece
Q psy9039 173 VDITETAKAASFFLSDGLIITGNATGDPADVSQLMSVKNAVDLPILIGSGV-TSDNVEHYMT--ADALIIGSH 242 (251)
Q Consensus 173 ~~i~~~a~~a~~~~~D~v~VTG~~~g~~~~~~~l~~vr~~~~~PV~vG~GI-~~~~v~~~~~--ADGvIVGS~ 242 (251)
....++++..+..|+|++-+.+...+...+++.+++++ +++||+..||| |.+++.+++. ||+|.||.+
T Consensus 152 ~~~~~la~~l~~aG~d~ihv~~~~~g~~ad~~~I~~i~--~~ipVIgnGgI~s~eda~~~l~~GaD~VmiGR~ 222 (233)
T cd02911 152 VDDEELARLIEKAGADIIHVDAMDPGNHADLKKIRDIS--TELFIIGNNSVTTIESAKEMFSYGADMVSVARA 222 (233)
T ss_pred cCHHHHHHHHHHhCCCEEEECcCCCCCCCcHHHHHHhc--CCCEEEEECCcCCHHHHHHHHHcCCCEEEEcCC
Confidence 34566777777789999877665555455778888887 68999999999 7999999985 999999998
|
This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown. |
| >PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=98.02 E-value=6.4e-05 Score=65.85 Aligned_cols=176 Identities=14% Similarity=0.162 Sum_probs=103.0
Q ss_pred HhhCCCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHHHHHHHHcCccc
Q psy9039 39 RKVLPPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQAAGLDF 118 (251)
Q Consensus 39 ~~~a~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g~~F 118 (251)
.++++.|.+.|+ |.+-+==+ |-=|.....-|| +.++++|+.+++ +|+=+-++.+.+......+...|++.
T Consensus 22 ~~~~~~l~~~~~-~~~H~Dim-Dg~fvpn~~~G~-------~~v~~lr~~~~~-~~lDvHLm~~~p~~~i~~~~~~Gad~ 91 (228)
T PTZ00170 22 ADEAQDVLSGGA-DWLHVDVM-DGHFVPNLSFGP-------PVVKSLRKHLPN-TFLDCHLMVSNPEKWVDDFAKAGASQ 91 (228)
T ss_pred HHHHHHHHHcCC-CEEEEecc-cCccCCCcCcCH-------HHHHHHHhcCCC-CCEEEEECCCCHHHHHHHHHHcCCCE
Confidence 344478889999 99865222 223544444554 456677777633 68888888776555555556677787
Q ss_pred eecccccccccCCCceeecC-cchhHHHHHhcCCCcchhhhhhHhhccCCCCCCcccHHHHHHHhhhccccEEEecCCCC
Q psy9039 119 IRAESFVFGHMADEGLMNAQ-AGPLLRYRKQIGADNVLVFTDIKKKHSSHAITADVDITETAKAASFFLSDGLIITGNAT 197 (251)
Q Consensus 119 ir~~~~~~~~~~~~Gli~~d-a~e~~~~r~~l~~~~i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~~~~~D~v~VTG~~~ 197 (251)
+-.....+ .. ..+.++..++.|. .+- +.+++.+ +.+++........+|.+.+-..+.
T Consensus 92 itvH~ea~----------~~~~~~~l~~ik~~G~-~~g----------val~p~t-~~e~l~~~l~~~~vD~Vl~m~v~p 149 (228)
T PTZ00170 92 FTFHIEAT----------EDDPKAVARKIREAGM-KVG----------VAIKPKT-PVEVLFPLIDTDLVDMVLVMTVEP 149 (228)
T ss_pred EEEeccCC----------chHHHHHHHHHHHCCC-eEE----------EEECCCC-CHHHHHHHHccchhhhHHhhhccc
Confidence 76542111 11 2345555555553 111 1111111 333332221112366653333333
Q ss_pred CC---C---CCHHHHHHHHhcC-CCCEEEecCCChHhHHHhhc--CCEEEEeceEeec
Q psy9039 198 GD---P---ADVSQLMSVKNAV-DLPILIGSGVTSDNVEHYMT--ADALIIGSHFKQG 246 (251)
Q Consensus 198 g~---~---~~~~~l~~vr~~~-~~PV~vG~GI~~~~v~~~~~--ADGvIVGS~~~~~ 246 (251)
|. . ...++++++|+.. +..+.+-|||+++++.++.+ ||.+||||++-+.
T Consensus 150 G~~gq~~~~~~~~ki~~~~~~~~~~~I~VdGGI~~~ti~~~~~aGad~iVvGsaI~~a 207 (228)
T PTZ00170 150 GFGGQSFMHDMMPKVRELRKRYPHLNIQVDGGINLETIDIAADAGANVIVAGSSIFKA 207 (228)
T ss_pred CCCCcEecHHHHHHHHHHHHhcccCeEEECCCCCHHHHHHHHHcCCCEEEEchHHhCC
Confidence 32 1 1246777887765 57899999999999999886 9999999998653
|
|
| >TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family | Back alignment and domain information |
|---|
Probab=98.01 E-value=4.9e-05 Score=69.61 Aligned_cols=74 Identities=19% Similarity=0.301 Sum_probs=59.3
Q ss_pred cHHHHHHHhhhccccEEEecCCCC-C-C--CCCHHHHHHHHhcCCCCEEEecCC-ChHhHHHhh-c--CCEEEEeceEee
Q psy9039 174 DITETAKAASFFLSDGLIITGNAT-G-D--PADVSQLMSVKNAVDLPILIGSGV-TSDNVEHYM-T--ADALIIGSHFKQ 245 (251)
Q Consensus 174 ~i~~~a~~a~~~~~D~v~VTG~~~-g-~--~~~~~~l~~vr~~~~~PV~vG~GI-~~~~v~~~~-~--ADGvIVGS~~~~ 245 (251)
...+.++..+..|+|.+.++|... + . +..++.++++|+.+++||++.||| +++++.+++ . ||+|.+|+++..
T Consensus 148 ~~~~~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~~~~da~~~l~~~gad~VmigR~~l~ 227 (319)
T TIGR00737 148 NAVEAARIAEDAGAQAVTLHGRTRAQGYSGEANWDIIARVKQAVRIPVIGNGDIFSPEDAKAMLETTGCDGVMIGRGALG 227 (319)
T ss_pred hHHHHHHHHHHhCCCEEEEEcccccccCCCchhHHHHHHHHHcCCCcEEEeCCCCCHHHHHHHHHhhCCCEEEEChhhhh
Confidence 455666666667999999987422 1 1 235688999999999999999999 799999998 3 999999999887
Q ss_pred cC
Q psy9039 246 GG 247 (251)
Q Consensus 246 ~g 247 (251)
|-
T Consensus 228 ~P 229 (319)
T TIGR00737 228 NP 229 (319)
T ss_pred CC
Confidence 64
|
Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. |
| >PRK03512 thiamine-phosphate pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.00017 Score=62.43 Aligned_cols=72 Identities=14% Similarity=0.135 Sum_probs=52.4
Q ss_pred cHHHHHHHhhhccccEEEecC-----CCCCCC--CCHHHHHHHHhc-CCCCEEEecCCChHhHHHhhc--CCEEEEeceE
Q psy9039 174 DITETAKAASFFLSDGLIITG-----NATGDP--ADVSQLMSVKNA-VDLPILIGSGVTSDNVEHYMT--ADALIIGSHF 243 (251)
Q Consensus 174 ~i~~~a~~a~~~~~D~v~VTG-----~~~g~~--~~~~~l~~vr~~-~~~PV~vG~GI~~~~v~~~~~--ADGvIVGS~~ 243 (251)
+.++ +..|...|+|+++++- ++.+.. ..++.++++++. .++||++-|||+++|+.+++. ++|+.|-|+|
T Consensus 111 ~~~e-~~~A~~~gaDYi~lgpvf~T~tK~~~~~~~G~~~l~~~~~~~~~~PV~AiGGI~~~ni~~l~~~Ga~GiAvisai 189 (211)
T PRK03512 111 DDME-IDVALAARPSYIALGHVFPTQTKQMPSAPQGLAQLARHVERLADYPTVAIGGISLERAPAVLATGVGSIAVVSAI 189 (211)
T ss_pred CHHH-HHHHhhcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhcCCCCEEEECCCCHHHHHHHHHcCCCEEEEhhHh
Confidence 3344 3444446888887743 343322 245677777666 589999999999999999996 9999999998
Q ss_pred eec
Q psy9039 244 KQG 246 (251)
Q Consensus 244 ~~~ 246 (251)
.+.
T Consensus 190 ~~~ 192 (211)
T PRK03512 190 TQA 192 (211)
T ss_pred hCC
Confidence 753
|
|
| >COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.00014 Score=62.36 Aligned_cols=71 Identities=17% Similarity=0.207 Sum_probs=55.1
Q ss_pred cHHHHHHHhhhccccEEEec-----C-CCCCCCCCHHHHHHHHhcCCCCEEEecCC-ChHhHHHhhc--CCEEEEeceEe
Q psy9039 174 DITETAKAASFFLSDGLIIT-----G-NATGDPADVSQLMSVKNAVDLPILIGSGV-TSDNVEHYMT--ADALIIGSHFK 244 (251)
Q Consensus 174 ~i~~~a~~a~~~~~D~v~VT-----G-~~~g~~~~~~~l~~vr~~~~~PV~vG~GI-~~~~v~~~~~--ADGvIVGS~~~ 244 (251)
+.-+.+..|...|+|-++.| + ......++.++++++.+ .+.||++=|.+ ||+++++.+. |++++|||++-
T Consensus 135 St~ee~l~a~~~G~D~IGTTLsGYT~~~~~~~~pDf~lvk~l~~-~~~~vIAEGr~~tP~~Ak~a~~~Ga~aVvVGsAIT 213 (229)
T COG3010 135 STFEEGLNAHKLGFDIIGTTLSGYTGYTEKPTEPDFQLVKQLSD-AGCRVIAEGRYNTPEQAKKAIEIGADAVVVGSAIT 213 (229)
T ss_pred CCHHHHHHHHHcCCcEEecccccccCCCCCCCCCcHHHHHHHHh-CCCeEEeeCCCCCHHHHHHHHHhCCeEEEECcccC
Confidence 33445667777799998775 2 22223456788888888 78999999999 7999999997 99999999985
Q ss_pred e
Q psy9039 245 Q 245 (251)
Q Consensus 245 ~ 245 (251)
+
T Consensus 214 R 214 (229)
T COG3010 214 R 214 (229)
T ss_pred C
Confidence 4
|
|
| >cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.00013 Score=66.21 Aligned_cols=44 Identities=16% Similarity=0.297 Sum_probs=37.6
Q ss_pred HHHHHHHhcC--CCCEEEecCC-ChHhHHHhhc--CCEEEEeceEeecC
Q psy9039 204 SQLMSVKNAV--DLPILIGSGV-TSDNVEHYMT--ADALIIGSHFKQGG 247 (251)
Q Consensus 204 ~~l~~vr~~~--~~PV~vG~GI-~~~~v~~~~~--ADGvIVGS~~~~~g 247 (251)
+.+.++++.+ ++||+.-||| |.+++.+++. ||+|.|||++...|
T Consensus 231 ~~v~~~~~~~~~~ipIig~GGI~s~~da~e~l~aGA~~Vqv~ta~~~~g 279 (294)
T cd04741 231 GNVRTFRRLLPSEIQIIGVGGVLDGRGAFRMRLAGASAVQVGTALGKEG 279 (294)
T ss_pred HHHHHHHHhcCCCCCEEEeCCCCCHHHHHHHHHcCCCceeEchhhhhcC
Confidence 5567888888 4999999999 7899998885 99999999998643
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. |
| >PRK08745 ribulose-phosphate 3-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.00023 Score=62.26 Aligned_cols=173 Identities=17% Similarity=0.241 Sum_probs=104.8
Q ss_pred HhhCCCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHh-CCCCccEEEEEeeCChHHHHHHHHHcCcc
Q psy9039 39 RKVLPPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKV-LPPSVPVGVQILSGCNKAALATAQAAGLD 117 (251)
Q Consensus 39 ~~~a~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~-~~~~~P~Gvn~~~N~~~~~~~ia~a~g~~ 117 (251)
.++++.|.++|+ |.+-+==+-| =|...+.-||.+ ++++|+. ++ .|+=+-++...|...+..-...|++
T Consensus 19 ~~~i~~l~~~g~-d~lHiDimDG-~FVPN~tfg~~~-------i~~lr~~~~~--~~~dvHLMv~~P~~~i~~~~~~gad 87 (223)
T PRK08745 19 GEEVDNVLKAGA-DWVHFDVMDN-HYVPNLTIGPMV-------CQALRKHGIT--APIDVHLMVEPVDRIVPDFADAGAT 87 (223)
T ss_pred HHHHHHHHHcCC-CEEEEecccC-ccCCCcccCHHH-------HHHHHhhCCC--CCEEEEeccCCHHHHHHHHHHhCCC
Confidence 344477888999 9987532223 365555566654 5567776 46 6888888887654444444446777
Q ss_pred ceecccccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHhhccCCCCCCcccHHHHHHHhhhccccEEEecCCCC
Q psy9039 118 FIRAESFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSSHAITADVDITETAKAASFFLSDGLIITGNAT 197 (251)
Q Consensus 118 Fir~~~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~~~~~D~v~VTG~~~ 197 (251)
.+-.... . .....+.+++-+++|. |.|+.++ +.-+++.+..-. ..+|.+.+-....
T Consensus 88 ~I~~H~E----a------~~~~~~~l~~Ir~~g~-----------k~Glaln-P~T~~~~i~~~l--~~vD~VlvMtV~P 143 (223)
T PRK08745 88 TISFHPE----A------SRHVHRTIQLIKSHGC-----------QAGLVLN-PATPVDILDWVL--PELDLVLVMSVNP 143 (223)
T ss_pred EEEEccc----C------cccHHHHHHHHHHCCC-----------ceeEEeC-CCCCHHHHHHHH--hhcCEEEEEEECC
Confidence 7665421 1 1234556677777775 1222221 112333331111 2578776654444
Q ss_pred CCC------CCHHHHHHHHhcC-----CCCEEEecCCChHhHHHhhc--CCEEEEeceEeec
Q psy9039 198 GDP------ADVSQLMSVKNAV-----DLPILIGSGVTSDNVEHYMT--ADALIIGSHFKQG 246 (251)
Q Consensus 198 g~~------~~~~~l~~vr~~~-----~~PV~vG~GI~~~~v~~~~~--ADGvIVGS~~~~~ 246 (251)
|.. ...++++++|+.. +..+-+-|||+.+++.++.+ ||.+|+||++-..
T Consensus 144 Gf~GQ~fi~~~l~KI~~l~~~~~~~~~~~~IeVDGGI~~eti~~l~~aGaDi~V~GSaiF~~ 205 (223)
T PRK08745 144 GFGGQAFIPSALDKLRAIRKKIDALGKPIRLEIDGGVKADNIGAIAAAGADTFVAGSAIFNA 205 (223)
T ss_pred CCCCccccHHHHHHHHHHHHHHHhcCCCeeEEEECCCCHHHHHHHHHcCCCEEEEChhhhCC
Confidence 432 2346677666642 46799999999999999986 9999999998643
|
|
| >cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.00015 Score=67.12 Aligned_cols=73 Identities=16% Similarity=0.122 Sum_probs=56.0
Q ss_pred HHHHHhhhccccEEEecCCCCCC---CCCHHHHHHHHhcCCCCEEEecCCChHhHHHhhc---CCEEEEeceEeecCee
Q psy9039 177 ETAKAASFFLSDGLIITGNATGD---PADVSQLMSVKNAVDLPILIGSGVTSDNVEHYMT---ADALIIGSHFKQGGRT 249 (251)
Q Consensus 177 ~~a~~a~~~~~D~v~VTG~~~g~---~~~~~~l~~vr~~~~~PV~vG~GI~~~~v~~~~~---ADGvIVGS~~~~~g~~ 249 (251)
++++..+..|+|.+-||+..... ....+..+++|+++++||++.|||+++.+.++++ ||.|-+|..|+.|-.|
T Consensus 245 ~~~~~l~~~g~d~i~vs~g~~~~~~~~~~~~~~~~ik~~~~ipvi~~G~i~~~~a~~~l~~g~~D~V~~gR~~ladP~~ 323 (338)
T cd02933 245 YLAKELNKRGLAYLHLVEPRVAGNPEDQPPDFLDFLRKAFKGPLIAAGGYDAESAEAALADGKADLVAFGRPFIANPDL 323 (338)
T ss_pred HHHHHHHHcCCcEEEEecCCCCCcccccchHHHHHHHHHcCCCEEEECCCCHHHHHHHHHcCCCCEEEeCHhhhhCcCH
Confidence 44444444578999886543321 2245778899999999999999999999999984 9999999999887544
|
OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes. |
| >cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain | Back alignment and domain information |
|---|
Probab=97.94 E-value=9.4e-05 Score=68.20 Aligned_cols=158 Identities=16% Similarity=0.251 Sum_probs=94.8
Q ss_pred hHHHHHHHHHhhCCCCcCCCCccEEEEeecCC-------CCccccCCC--chH---HHHHHHHHHHHHHHhCCCCccEEE
Q psy9039 30 NMTRLCAEIRKVLPPSVPVGVQHGVIVENMHD-------VPYVLEAES--GPE---ITANMTRLCAEIRKVLPPSVPVGV 97 (251)
Q Consensus 30 ~~~~i~~~a~~~a~~l~~~Gv~D~i~ieN~~~-------~Pf~~p~~~--gp~---i~aa~~~~i~~vr~~~~~~~P~Gv 97 (251)
.++.+++.-.+.|+.+.++|+ |+|+|---.| -|++..-.| |-. -..-...+++++|+.+++.+|+++
T Consensus 148 eI~~ii~~~~~aA~~a~~aGf-DgVei~~~~gyLl~qFlsp~~N~R~D~yGgsl~nr~rf~~eiv~aIR~~vG~d~~v~v 226 (336)
T cd02932 148 EIAEVVDAFVAAARRAVEAGF-DVIEIHAAHGYLLHQFLSPLSNKRTDEYGGSLENRMRFLLEVVDAVRAVWPEDKPLFV 226 (336)
T ss_pred HHHHHHHHHHHHHHHHHHcCC-CEEEEccccccHHHHhcCCccCCCCcccCCCHHHHhHHHHHHHHHHHHHcCCCceEEE
Confidence 467788888889998999999 9999821112 255544333 211 122233577888887743256665
Q ss_pred EEeeCChHHHHHHHHHcCccceecccccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHhhccCCCCCCcccHHH
Q psy9039 98 QILSGCNKAALATAQAAGLDFIRAESFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSSHAITADVDITE 177 (251)
Q Consensus 98 n~~~N~~~~~~~ia~a~g~~Fir~~~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~k~~~~~~~~~~~i~~ 177 (251)
-+ |+ .++... |+ +.. ...+
T Consensus 227 ri--~~------------~~~~~~-----------g~---~~~---------------------------------e~~~ 245 (336)
T cd02932 227 RI--SA------------TDWVEG-----------GW---DLE---------------------------------DSVE 245 (336)
T ss_pred EE--cc------------cccCCC-----------CC---CHH---------------------------------HHHH
Confidence 43 22 012110 00 000 1112
Q ss_pred HHHHhhhccccEEEecCC-CCC-----C-C-CCHHHHHHHHhcCCCCEEEecCC-ChHhHHHhhc---CCEEEEeceEee
Q psy9039 178 TAKAASFFLSDGLIITGN-ATG-----D-P-ADVSQLMSVKNAVDLPILIGSGV-TSDNVEHYMT---ADALIIGSHFKQ 245 (251)
Q Consensus 178 ~a~~a~~~~~D~v~VTG~-~~g-----~-~-~~~~~l~~vr~~~~~PV~vG~GI-~~~~v~~~~~---ADGvIVGS~~~~ 245 (251)
+++..+.+++|.+-|++. .+. . + ...+..+++|+.+++||+.++|| +++++.+++. ||.|.+|.+++.
T Consensus 246 ia~~Le~~gvd~iev~~g~~~~~~~~~~~~~~~~~~~~~ir~~~~iPVi~~G~i~t~~~a~~~l~~g~aD~V~~gR~~i~ 325 (336)
T cd02932 246 LAKALKELGVDLIDVSSGGNSPAQKIPVGPGYQVPFAERIRQEAGIPVIAVGLITDPEQAEAILESGRADLVALGRELLR 325 (336)
T ss_pred HHHHHHHcCCCEEEECCCCCCcccccCCCccccHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHHHcCCCCeehhhHHHHh
Confidence 222222345666655421 111 1 1 12467788999999999999999 7999999994 999999999988
Q ss_pred cCee
Q psy9039 246 GGRT 249 (251)
Q Consensus 246 ~g~~ 249 (251)
|-.|
T Consensus 326 dP~~ 329 (336)
T cd02932 326 NPYW 329 (336)
T ss_pred CccH
Confidence 7543
|
YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs. |
| >COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.00028 Score=61.32 Aligned_cols=174 Identities=16% Similarity=0.265 Sum_probs=110.8
Q ss_pred hhCCCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHHHHHHHHcCccce
Q psy9039 40 KVLPPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQAAGLDFI 119 (251)
Q Consensus 40 ~~a~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g~~Fi 119 (251)
++++.+.++|+ |.+-+-=+-| =|...+.-||.+.++ +|+.++ .|+=+-++...+...+..-...|++++
T Consensus 20 ~el~~~~~aga-d~iH~DVMDg-hFVPNiTfGp~~v~~-------l~~~t~--~p~DvHLMV~~p~~~i~~fa~agad~I 88 (220)
T COG0036 20 EELKALEAAGA-DLIHIDVMDG-HFVPNITFGPPVVKA-------LRKITD--LPLDVHLMVENPDRYIEAFAKAGADII 88 (220)
T ss_pred HHHHHHHHcCC-CEEEEeccCC-CcCCCcccCHHHHHH-------HhhcCC--CceEEEEecCCHHHHHHHHHHhCCCEE
Confidence 34478889999 9997643333 477777788877554 555666 688888888775444444445678887
Q ss_pred ecccccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHhhccCCCCCCcccHHHHHHHhhhccccEEEecCCCCCC
Q psy9039 120 RAESFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSSHAITADVDITETAKAASFFLSDGLIITGNATGD 199 (251)
Q Consensus 120 r~~~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~~~~~D~v~VTG~~~g~ 199 (251)
-.... -.+...+.+.+-+++|. |.|+.+ .+.-+++.+-.-. .-+|.+-+-....|.
T Consensus 89 t~H~E----------~~~~~~r~i~~Ik~~G~-----------kaGv~l-nP~Tp~~~i~~~l--~~vD~VllMsVnPGf 144 (220)
T COG0036 89 TFHAE----------ATEHIHRTIQLIKELGV-----------KAGLVL-NPATPLEALEPVL--DDVDLVLLMSVNPGF 144 (220)
T ss_pred EEEec----------cCcCHHHHHHHHHHcCC-----------eEEEEE-CCCCCHHHHHHHH--hhCCEEEEEeECCCC
Confidence 76521 12345667777777776 222222 1112332221001 247777664443333
Q ss_pred ------CCCHHHHHHHHhcCC----CCEEEecCCChHhHHHhhc--CCEEEEeceEeecCe
Q psy9039 200 ------PADVSQLMSVKNAVD----LPILIGSGVTSDNVEHYMT--ADALIIGSHFKQGGR 248 (251)
Q Consensus 200 ------~~~~~~l~~vr~~~~----~PV~vG~GI~~~~v~~~~~--ADGvIVGS~~~~~g~ 248 (251)
+..+++++++|+..+ +-+=+=|||+.+|+.++.. ||-++.||++..+.+
T Consensus 145 gGQ~Fi~~~l~Ki~~lr~~~~~~~~~~IeVDGGI~~~t~~~~~~AGad~~VaGSalF~~~d 205 (220)
T COG0036 145 GGQKFIPEVLEKIRELRAMIDERLDILIEVDGGINLETIKQLAAAGADVFVAGSALFGADD 205 (220)
T ss_pred cccccCHHHHHHHHHHHHHhcccCCeEEEEeCCcCHHHHHHHHHcCCCEEEEEEEEeCCcc
Confidence 223577888887653 3577899999999999995 999999999987654
|
|
| >PLN02898 HMP-P kinase/thiamin-monophosphate pyrophosphorylase | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.0001 Score=71.51 Aligned_cols=156 Identities=17% Similarity=0.162 Sum_probs=94.2
Q ss_pred CCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHHHHHHHHcCccceecc
Q psy9039 43 PPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQAAGLDFIRAE 122 (251)
Q Consensus 43 ~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g~~Fir~~ 122 (251)
+.+.++|+ +.|.+ . ++..+.. .+...++++++... ..++.++.|+. ..+|...|++-++.
T Consensus 314 ~~~l~~Gv-~~vql----R----~k~~~~~----~~~~~a~~l~~~~~---~~~~~liind~---~~lA~~~~adGvHl- 373 (502)
T PLN02898 314 RAAIEGGA-TIVQL----R----EKEAETR----EFIEEAKACLAICR---SYGVPLLINDR---VDVALACDADGVHL- 373 (502)
T ss_pred HHHHHcCC-CEEEE----c----cCCCCHH----HHHHHHHHHHHHHH---HhCCEEEEcCh---HHHHHhcCCCEEEe-
Confidence 44668899 99985 2 2211222 33444455544433 23455666663 56666667666553
Q ss_pred cccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHhhccCCCCCCcccHHHHHHHhhhccccEEEe-----cCCCC
Q psy9039 123 SFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSSHAITADVDITETAKAASFFLSDGLII-----TGNAT 197 (251)
Q Consensus 123 ~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~~~~~D~v~V-----TG~~~ 197 (251)
+...+ .....|+.++.. +++. .|.| +..+ +..|...|+|++.+ |.++.
T Consensus 374 -------~~~d~------~~~~~r~~~~~~--~~iG-----~S~h------~~~e-~~~a~~~gadyi~~gpif~t~tk~ 426 (502)
T PLN02898 374 -------GQSDM------PVRLARSLLGPG--KIIG-----VSCK------TPEQ-AEQAWKDGADYIGCGGVFPTNTKA 426 (502)
T ss_pred -------ChHhc------CHHHHHHhcCCC--CEEE-----EeCC------CHHH-HHHHhhcCCCEEEECCeecCCCCC
Confidence 22211 123445555432 2221 1222 3333 45555568888764 55554
Q ss_pred CCCC-CHHHHHHHHhcCCCCEEEecCCChHhHHHhhc--CC---EEEEeceEee
Q psy9039 198 GDPA-DVSQLMSVKNAVDLPILIGSGVTSDNVEHYMT--AD---ALIIGSHFKQ 245 (251)
Q Consensus 198 g~~~-~~~~l~~vr~~~~~PV~vG~GI~~~~v~~~~~--AD---GvIVGS~~~~ 245 (251)
+.++ .++.++++++..++||++-|||+++|+.+++. +| |+.|+|++.+
T Consensus 427 ~~~~~g~~~~~~~~~~~~~Pv~aiGGI~~~~~~~~~~~G~~~~~gvav~~~i~~ 480 (502)
T PLN02898 427 NNKTIGLDGLREVCEASKLPVVAIGGISASNAASVMESGAPNLKGVAVVSALFD 480 (502)
T ss_pred CCCCCCHHHHHHHHHcCCCCEEEECCCCHHHHHHHHHcCCCcCceEEEEeHHhc
Confidence 4333 57888888888899999999999999999986 77 9999999864
|
|
| >PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.00032 Score=61.67 Aligned_cols=180 Identities=14% Similarity=0.043 Sum_probs=106.0
Q ss_pred CCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHHHHHHHHcCccceecc
Q psy9039 43 PPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQAAGLDFIRAE 122 (251)
Q Consensus 43 ~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g~~Fir~~ 122 (251)
+.+.+.|+ |-+.|-+..+. +..+ . ...+++++.+... .|+-+-.=... .+...-....|++.+-.+
T Consensus 37 ~~~~~~ga-~~lhivDLd~a-~~~~-----~----n~~~i~~i~~~~~--~~v~vGGGIrs-~e~~~~~l~~Ga~kvvig 102 (232)
T PRK13586 37 SKLYNEGY-TRIHVVDLDAA-EGVG-----N----NEMYIKEISKIGF--DWIQVGGGIRD-IEKAKRLLSLDVNALVFS 102 (232)
T ss_pred HHHHHCCC-CEEEEEECCCc-CCCc-----c----hHHHHHHHHhhCC--CCEEEeCCcCC-HHHHHHHHHCCCCEEEEC
Confidence 56778899 99988666554 2221 1 2367777776432 25433322222 333444444566655432
Q ss_pred cccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHhhccC----CCCCCcccHHHHHHHhhhccccEEEecCCCCC
Q psy9039 123 SFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSS----HAITADVDITETAKAASFFLSDGLIITGNATG 198 (251)
Q Consensus 123 ~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~k~~~----~~~~~~~~i~~~a~~a~~~~~D~v~VTG~~~g 198 (251)
.. ...+.+.+.+..+++|...+-+==|+. +.+. -+.....++.+.++..+.+|+..+++|--...
T Consensus 103 ----t~------a~~~p~~~~~~~~~~g~~~ivvslD~~-~~~~v~~~gw~~~~~~~~e~~~~l~~~g~~~ii~tdI~~d 171 (232)
T PRK13586 103 ----TI------VFTNFNLFHDIVREIGSNRVLVSIDYD-NTKRVLIRGWKEKSMEVIDGIKKVNELELLGIIFTYISNE 171 (232)
T ss_pred ----ch------hhCCHHHHHHHHHHhCCCCEEEEEEcC-CCCEEEccCCeeCCCCHHHHHHHHHhcCCCEEEEeccccc
Confidence 11 112344555667777654332211221 1110 01123345667777777778988988875332
Q ss_pred ---CCCCHHHHHHHHhcCCCCEEEecCC-ChHhHHHhhc--CCEEEEeceEeecCee
Q psy9039 199 ---DPADVSQLMSVKNAVDLPILIGSGV-TSDNVEHYMT--ADALIIGSHFKQGGRT 249 (251)
Q Consensus 199 ---~~~~~~~l~~vr~~~~~PV~vG~GI-~~~~v~~~~~--ADGvIVGS~~~~~g~~ 249 (251)
..++.++++++++. ..|++++||+ +.+++.++.+ +||++|||+|- .|++
T Consensus 172 Gt~~G~d~el~~~~~~~-~~~viasGGv~s~~Dl~~l~~~G~~gvivg~Aly-~g~~ 226 (232)
T PRK13586 172 GTTKGIDYNVKDYARLI-RGLKEYAGGVSSDADLEYLKNVGFDYIIVGMAFY-LGKL 226 (232)
T ss_pred ccCcCcCHHHHHHHHhC-CCCEEEECCCCCHHHHHHHHHCCCCEEEEehhhh-cCcc
Confidence 24567889888876 5679999999 6799998886 99999999986 4443
|
|
| >CHL00162 thiG thiamin biosynthesis protein G; Validated | Back alignment and domain information |
|---|
Probab=97.90 E-value=9.4e-05 Score=65.42 Aligned_cols=116 Identities=17% Similarity=0.257 Sum_probs=88.5
Q ss_pred ccceecccccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHhhccCCCCCCcccHHHHHHHhhhccccEEEecCC
Q psy9039 116 LDFIRAESFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSSHAITADVDITETAKAASFFLSDGLIITGN 195 (251)
Q Consensus 116 ~~Fir~~~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~~~~~D~v~VTG~ 195 (251)
-+|+... -.+++-.+.||..|.++..+.|-.+...++ |.+++|. ..++..+..||.++-.=|+
T Consensus 105 ~~wIKLE-----Vi~D~~~LlPD~~etl~Aae~Lv~eGF~Vl---------PY~~~D~---v~a~rLed~Gc~aVMPlgs 167 (267)
T CHL00162 105 NNFVKLE-----VISDPKYLLPDPIGTLKAAEFLVKKGFTVL---------PYINADP---MLAKHLEDIGCATVMPLGS 167 (267)
T ss_pred CCeEEEE-----EeCCCcccCCChHHHHHHHHHHHHCCCEEe---------ecCCCCH---HHHHHHHHcCCeEEeeccC
Confidence 5788863 355777889999999999999887777776 4333332 2456666678988877665
Q ss_pred CCCC---CCCHHHHHHHHhcCCCCEEEecCC-ChHhHHHhhc--CCEEEEeceEeecCe
Q psy9039 196 ATGD---PADVSQLMSVKNAVDLPILIGSGV-TSDNVEHYMT--ADALIIGSHFKQGGR 248 (251)
Q Consensus 196 ~~g~---~~~~~~l~~vr~~~~~PV~vG~GI-~~~~v~~~~~--ADGvIVGS~~~~~g~ 248 (251)
--|. -.+...|+.+++..++||+++.|| +++++.+.++ |||+-+.|++.+-.+
T Consensus 168 PIGSg~Gl~n~~~l~~i~e~~~vpVivdAGIgt~sDa~~AmElGaDgVL~nSaIakA~d 226 (267)
T CHL00162 168 PIGSGQGLQNLLNLQIIIENAKIPVIIDAGIGTPSEASQAMELGASGVLLNTAVAQAKN 226 (267)
T ss_pred cccCCCCCCCHHHHHHHHHcCCCcEEEeCCcCCHHHHHHHHHcCCCEEeecceeecCCC
Confidence 3332 234677888999999999999999 7999999997 999999999987554
|
|
| >TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2 | Back alignment and domain information |
|---|
Probab=97.90 E-value=3.8e-05 Score=71.00 Aligned_cols=74 Identities=23% Similarity=0.297 Sum_probs=56.8
Q ss_pred cHHHHHHHhhhccccEEEecCCCC--------------CC-C------CCHHHHHHHHhcC--CCCEEEecCC-ChHhHH
Q psy9039 174 DITETAKAASFFLSDGLIITGNAT--------------GD-P------ADVSQLMSVKNAV--DLPILIGSGV-TSDNVE 229 (251)
Q Consensus 174 ~i~~~a~~a~~~~~D~v~VTG~~~--------------g~-~------~~~~~l~~vr~~~--~~PV~vG~GI-~~~~v~ 229 (251)
.+.++++.+...|+|+++.+.+-. |. . ..++.+.++++.. ++|++.-||| |++++.
T Consensus 225 ~i~~ia~~~~~~GadGi~l~NT~~~~~~~~~~~~~~~~GGlSG~~i~p~al~~v~~~~~~~~~~ipiig~GGI~~~~da~ 304 (335)
T TIGR01036 225 DLEDIADSLVELGIDGVIATNTTVSRSLVQGPKNSDETGGLSGKPLQDKSTEIIRRLYAELQGRLPIIGVGGISSAQDAL 304 (335)
T ss_pred HHHHHHHHHHHhCCcEEEEECCCCccccccCccccCCCCcccCHHHHHHHHHHHHHHHHHhCCCCCEEEECCCCCHHHHH
Confidence 578888888778999998765321 11 0 0135677787776 6999999999 799999
Q ss_pred Hhhc--CCEEEEeceEeecC
Q psy9039 230 HYMT--ADALIIGSHFKQGG 247 (251)
Q Consensus 230 ~~~~--ADGvIVGS~~~~~g 247 (251)
+++. ||.|.|||++..+|
T Consensus 305 e~l~aGA~~Vqv~ta~~~~G 324 (335)
T TIGR01036 305 EKIRAGASLLQIYSGFIYWG 324 (335)
T ss_pred HHHHcCCcHHHhhHHHHHhC
Confidence 9985 99999999998765
|
The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region. |
| >PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: |
Back alignment and domain information |
|---|
Probab=97.90 E-value=1.3e-05 Score=68.01 Aligned_cols=69 Identities=23% Similarity=0.286 Sum_probs=50.8
Q ss_pred HHHHHHHhhhccccEEEecC-----CCCCCCCCHHHHHHHHhcCCCCEEEecCC-ChHhHHHhhc--CCEEEEeceEe
Q psy9039 175 ITETAKAASFFLSDGLIITG-----NATGDPADVSQLMSVKNAVDLPILIGSGV-TSDNVEHYMT--ADALIIGSHFK 244 (251)
Q Consensus 175 i~~~a~~a~~~~~D~v~VTG-----~~~g~~~~~~~l~~vr~~~~~PV~vG~GI-~~~~v~~~~~--ADGvIVGS~~~ 244 (251)
.-+.+..|...|+|.++.|= ...+..++.++++++++. ++||++=|+| ||+++++.++ |+.|+|||++-
T Consensus 101 t~ee~~~A~~~G~D~I~TTLsGYT~~t~~~~pD~~lv~~l~~~-~~pvIaEGri~tpe~a~~al~~GA~aVVVGsAIT 177 (192)
T PF04131_consen 101 TLEEAINAAELGFDIIGTTLSGYTPYTKGDGPDFELVRELVQA-DVPVIAEGRIHTPEQAAKALELGAHAVVVGSAIT 177 (192)
T ss_dssp SHHHHHHHHHTT-SEEE-TTTTSSTTSTTSSHHHHHHHHHHHT-TSEEEEESS--SHHHHHHHHHTT-SEEEE-HHHH
T ss_pred CHHHHHHHHHcCCCEEEcccccCCCCCCCCCCCHHHHHHHHhC-CCcEeecCCCCCHHHHHHHHhcCCeEEEECcccC
Confidence 34556777778999998853 333344567899999886 8999999999 7999999997 99999999874
|
; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B. |
| >PRK13957 indole-3-glycerol-phosphate synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00012 Score=64.93 Aligned_cols=165 Identities=16% Similarity=0.150 Sum_probs=110.5
Q ss_pred CCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHHHHHHHHcCccceecc
Q psy9039 43 PPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQAAGLDFIRAE 122 (251)
Q Consensus 43 ~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g~~Fir~~ 122 (251)
+.++++|+ ++|-|-++.. |... ...-++++|+.++ .|+--.=+.-+ .+++..|+..|++.+=.-
T Consensus 68 ~~y~~~GA-~aISVlTe~~--~F~G----------s~~~l~~v~~~v~--~PvL~KDFIid-~~QI~ea~~~GADavLLI 131 (247)
T PRK13957 68 KTYETLGA-SAISVLTDQS--YFGG----------SLEDLKSVSSELK--IPVLRKDFILD-EIQIREARAFGASAILLI 131 (247)
T ss_pred HHHHHCCC-cEEEEEcCCC--cCCC----------CHHHHHHHHHhcC--CCEEeccccCC-HHHHHHHHHcCCCEEEeE
Confidence 55889999 9998755442 2221 2355677888877 78777666655 678888888888876432
Q ss_pred cccccccCCCceeec-CcchhHHHHHhcCCCcchhhhhhHhhccCCCCCCcccHHHHHHHhhhccccEEEecCCCCC-CC
Q psy9039 123 SFVFGHMADEGLMNA-QAGPLLRYRKQIGADNVLVFTDIKKKHSSHAITADVDITETAKAASFFLSDGLIITGNATG-DP 200 (251)
Q Consensus 123 ~~~~~~~~~~Gli~~-da~e~~~~r~~l~~~~i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~~~~~D~v~VTG~~~g-~~ 200 (251)
+ .++.+ +..++.++.+.+|.+-+-.+ ...+.++.+...+++.++|--..-. ..
T Consensus 132 ~---------~~L~~~~l~~l~~~a~~lGle~LVEV----------------h~~~El~~a~~~ga~iiGINnRdL~t~~ 186 (247)
T PRK13957 132 V---------RILTPSQIKSFLKHASSLGMDVLVEV----------------HTEDEAKLALDCGAEIIGINTRDLDTFQ 186 (247)
T ss_pred H---------hhCCHHHHHHHHHHHHHcCCceEEEE----------------CCHHHHHHHHhCCCCEEEEeCCCCccce
Confidence 1 11222 36678888888887432221 1233345555568999998765322 23
Q ss_pred CCHHHHHHHHhcC--CCCEEEecCC-ChHhHHHhhc-CCEEEEeceEeecCe
Q psy9039 201 ADVSQLMSVKNAV--DLPILIGSGV-TSDNVEHYMT-ADALIIGSHFKQGGR 248 (251)
Q Consensus 201 ~~~~~l~~vr~~~--~~PV~vG~GI-~~~~v~~~~~-ADGvIVGS~~~~~g~ 248 (251)
.+++...++.... +..++.-||| |++++..+.. +||+.||++|++..+
T Consensus 187 vd~~~~~~L~~~ip~~~~~IsESGI~t~~d~~~l~~~~davLvG~~lm~~~d 238 (247)
T PRK13957 187 IHQNLVEEVAAFLPPNIVKVGESGIESRSDLDKFRKLVDAALIGTYFMEKKD 238 (247)
T ss_pred ECHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHHHHHhCCEEEECHHHhCCCC
Confidence 4555556666554 5677888999 7999998877 999999999998643
|
|
| >TIGR00734 hisAF_rel hisA/hisF family protein | Back alignment and domain information |
|---|
Probab=97.88 E-value=3.7e-05 Score=67.03 Aligned_cols=72 Identities=17% Similarity=0.346 Sum_probs=53.8
Q ss_pred cHHHHHHHhhhccccEEEecCCCC---CCCCCHHHHHHHHhcCCCCEEEecCC-ChHhHHHhhc--CCEEEEeceEeec
Q psy9039 174 DITETAKAASFFLSDGLIITGNAT---GDPADVSQLMSVKNAVDLPILIGSGV-TSDNVEHYMT--ADALIIGSHFKQG 246 (251)
Q Consensus 174 ~i~~~a~~a~~~~~D~v~VTG~~~---g~~~~~~~l~~vr~~~~~PV~vG~GI-~~~~v~~~~~--ADGvIVGS~~~~~ 246 (251)
+..+..+....+++ .+++|--.. ...++.++++++++.+++||+++||| |.+++.++.. |||+++||+|..+
T Consensus 142 ~~~~~~~~~~~~g~-~ii~tdI~~dGt~~G~d~eli~~i~~~~~~pvia~GGi~s~ed~~~l~~~Ga~~vivgsal~~g 219 (221)
T TIGR00734 142 SLEEVRDFLNSFDY-GLIVLDIHSVGTMKGPNLELLTKTLELSEHPVMLGGGISGVEDLELLKEMGVSAVLVATAVHKG 219 (221)
T ss_pred cHHHHHHHHHhcCC-EEEEEECCccccCCCCCHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHHHCCCCEEEEhHHhhCC
Confidence 34444444444566 676665322 23457899999999999999999999 7899998885 9999999998553
|
This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown. |
| >PRK08005 epimerase; Validated | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00029 Score=61.06 Aligned_cols=173 Identities=13% Similarity=0.125 Sum_probs=104.7
Q ss_pred HhhCCCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHHHHHHHHcCccc
Q psy9039 39 RKVLPPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQAAGLDF 118 (251)
Q Consensus 39 ~~~a~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g~~F 118 (251)
.++++.|.++|+ |.+-+==+ |-=|...+.-||.+ ++++|+.++ .|+=+-++...|...+..-...|++.
T Consensus 16 ~~el~~l~~~g~-d~lHiDvM-DG~FVPN~tfG~~~-------i~~l~~~t~--~~~DvHLMv~~P~~~i~~~~~~gad~ 84 (210)
T PRK08005 16 AEALTALHDAPL-GSLHLDIE-DTSFINNITFGMKT-------IQAVAQQTR--HPLSFHLMVSSPQRWLPWLAAIRPGW 84 (210)
T ss_pred HHHHHHHHHCCC-CEEEEecc-CCCcCCccccCHHH-------HHHHHhcCC--CCeEEEeccCCHHHHHHHHHHhCCCE
Confidence 344477888999 99865322 22355555556654 556676666 68888888876544444434456777
Q ss_pred eecccccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHhhccCCCCCCcccHHHHHHHhhhccccEEEecCCCCC
Q psy9039 119 IRAESFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSSHAITADVDITETAKAASFFLSDGLIITGNATG 198 (251)
Q Consensus 119 ir~~~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~~~~~D~v~VTG~~~g 198 (251)
+-.... . ..+..+.+++-++.|. . .|+.+ .+.-+++.+..-. ..+|.+.+-....|
T Consensus 85 It~H~E----a------~~~~~~~l~~Ik~~G~-k----------~GlAl-nP~Tp~~~i~~~l--~~vD~VlvMsV~PG 140 (210)
T PRK08005 85 IFIHAE----S------VQNPSEILADIRAIGA-K----------AGLAL-NPATPLLPYRYLA--LQLDALMIMTSEPD 140 (210)
T ss_pred EEEccc----C------ccCHHHHHHHHHHcCC-c----------EEEEE-CCCCCHHHHHHHH--HhcCEEEEEEecCC
Confidence 665421 1 1234456677777775 1 12221 1112333332111 25787766554444
Q ss_pred CC------CCHHHHHHHHhcC-CCCEEEecCCChHhHHHhhc--CCEEEEeceEeec
Q psy9039 199 DP------ADVSQLMSVKNAV-DLPILIGSGVTSDNVEHYMT--ADALIIGSHFKQG 246 (251)
Q Consensus 199 ~~------~~~~~l~~vr~~~-~~PV~vG~GI~~~~v~~~~~--ADGvIVGS~~~~~ 246 (251)
.. ...++++++|+.. ...+-+=|||+.+|+.++.+ ||.+++||++-.+
T Consensus 141 f~GQ~f~~~~~~KI~~l~~~~~~~~I~VDGGI~~~~i~~l~~aGad~~V~GsaiF~~ 197 (210)
T PRK08005 141 GRGQQFIAAMCEKVSQSREHFPAAECWADGGITLRAARLLAAAGAQHLVIGRALFTT 197 (210)
T ss_pred CccceecHHHHHHHHHHHHhcccCCEEEECCCCHHHHHHHHHCCCCEEEEChHhhCC
Confidence 32 2246777777664 34799999999999999886 9999999998753
|
|
| >TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit | Back alignment and domain information |
|---|
Probab=97.87 E-value=3.6e-05 Score=68.31 Aligned_cols=74 Identities=19% Similarity=0.284 Sum_probs=58.6
Q ss_pred cHHHHHHHhhhccccEEEecCCC---CCCCCCHHHHHHHHhcCCCCEEEecCC-ChHhHHHhhc--CCEEEEeceEeecC
Q psy9039 174 DITETAKAASFFLSDGLIITGNA---TGDPADVSQLMSVKNAVDLPILIGSGV-TSDNVEHYMT--ADALIIGSHFKQGG 247 (251)
Q Consensus 174 ~i~~~a~~a~~~~~D~v~VTG~~---~g~~~~~~~l~~vr~~~~~PV~vG~GI-~~~~v~~~~~--ADGvIVGS~~~~~g 247 (251)
...+.++....+|+|.+.++.-. ++...+.+.++++++.+++||.+|||| +.+++.+++. ||+++|||++.++-
T Consensus 31 dp~~~a~~~~~~G~~~l~v~Dl~~~~~~~~~n~~~i~~i~~~~~~pv~~~GGi~s~~d~~~~~~~Ga~~vivgt~~~~~p 110 (254)
T TIGR00735 31 DPVELAQRYDEEGADELVFLDITASSEGRTTMIDVVERTAETVFIPLTVGGGIKSIEDVDKLLRAGADKVSINTAAVKNP 110 (254)
T ss_pred CHHHHHHHHHHcCCCEEEEEcCCcccccChhhHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcCCCEEEEChhHhhCh
Confidence 34555665555789999887643 233446788999999999999999999 6899999996 99999999987764
|
|
| >PRK05437 isopentenyl pyrophosphate isomerase; Provisional | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00015 Score=67.47 Aligned_cols=151 Identities=17% Similarity=0.166 Sum_probs=86.1
Q ss_pred HHHHHHHHhCCCCccEEEEEeeCCh----HHH-HHHHHHcCccceecccccccccC-CCceeecCc----chhHHHHHhc
Q psy9039 80 RLCAEIRKVLPPSVPVGVQILSGCN----KAA-LATAQAAGLDFIRAESFVFGHMA-DEGLMNAQA----GPLLRYRKQI 149 (251)
Q Consensus 80 ~~i~~vr~~~~~~~P~Gvn~~~N~~----~~~-~~ia~a~g~~Fir~~~~~~~~~~-~~Gli~~da----~e~~~~r~~l 149 (251)
...+.+|+..++ .|+..|+..+.. ... .......+++.+..+..+..... ..|- .+. +.+...++.+
T Consensus 109 ~~~~~vr~~~p~-~p~~aNl~~~~~~~~~~~~~~~~~~~~~adal~l~l~~~qe~~~p~g~--~~f~~~le~i~~i~~~~ 185 (352)
T PRK05437 109 DSFSVVRKVAPD-GLLFANLGAVQLYGYGVEEAQRAVEMIEADALQIHLNPLQELVQPEGD--RDFRGWLDNIAEIVSAL 185 (352)
T ss_pred HHHHHHHHHCCC-ceEEeecCccccCCCCHHHHHHHHHhcCCCcEEEeCccchhhcCCCCc--ccHHHHHHHHHHHHHhh
Confidence 445667887755 599999988642 111 12222345666665422211111 1111 111 2233344433
Q ss_pred CCCcchhhhhhHhhccCCCCCCcccHHHHHHHhhhccccEEEecCCCCC-----------------------CCCCHHHH
Q psy9039 150 GADNVLVFTDIKKKHSSHAITADVDITETAKAASFFLSDGLIITGNATG-----------------------DPADVSQL 206 (251)
Q Consensus 150 ~~~~i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~~~~~D~v~VTG~~~g-----------------------~~~~~~~l 206 (251)
+ +.++. |-. . .. ...+.++.....|+|++.|+|.. | ..+..+.|
T Consensus 186 ~---vPViv----K~~-g---~g-~s~~~a~~l~~~Gvd~I~Vsg~G-Gt~~~~ie~~R~~~~~~~~~~~~~g~pt~~~l 252 (352)
T PRK05437 186 P---VPVIV----KEV-G---FG-ISKETAKRLADAGVKAIDVAGAG-GTSWAAIENYRARDDRLASYFADWGIPTAQSL 252 (352)
T ss_pred C---CCEEE----EeC-C---CC-CcHHHHHHHHHcCCCEEEECCCC-CCCccchhhhhhhccccccccccccCCHHHHH
Confidence 2 22321 110 0 01 12455666666799999998842 2 01223567
Q ss_pred HHHHhc-CCCCEEEecCC-ChHhHHHhhc--CCEEEEeceEeec
Q psy9039 207 MSVKNA-VDLPILIGSGV-TSDNVEHYMT--ADALIIGSHFKQG 246 (251)
Q Consensus 207 ~~vr~~-~~~PV~vG~GI-~~~~v~~~~~--ADGvIVGS~~~~~ 246 (251)
.++++. .++||++-||| ++.++.+++. ||+|.+|+.|.+.
T Consensus 253 ~~i~~~~~~ipvia~GGI~~~~dv~k~l~~GAd~v~ig~~~l~~ 296 (352)
T PRK05437 253 LEARSLLPDLPIIASGGIRNGLDIAKALALGADAVGMAGPFLKA 296 (352)
T ss_pred HHHHHhcCCCeEEEECCCCCHHHHHHHHHcCCCEEEEhHHHHHH
Confidence 777777 58999999999 7899888885 9999999988653
|
|
| >PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4 | Back alignment and domain information |
|---|
Probab=97.84 E-value=4.6e-05 Score=67.87 Aligned_cols=165 Identities=17% Similarity=0.184 Sum_probs=103.4
Q ss_pred CCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHHHHHHHHcCccceecc
Q psy9039 43 PPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQAAGLDFIRAE 122 (251)
Q Consensus 43 ~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g~~Fir~~ 122 (251)
+.+.++|+ ++|-|-.+- .|... ...-++++|+.++ +|+--.=|.-+ .+++..|++.|++-+=.-
T Consensus 75 ~~y~~~GA-~aiSVlTe~--~~F~G----------s~~dL~~v~~~~~--~PvL~KDFIid-~~QI~eA~~~GADaVLLI 138 (254)
T PF00218_consen 75 KAYEEAGA-AAISVLTEP--KFFGG----------SLEDLRAVRKAVD--LPVLRKDFIID-PYQIYEARAAGADAVLLI 138 (254)
T ss_dssp HHHHHTT--SEEEEE--S--CCCHH----------HHHHHHHHHHHSS--S-EEEES---S-HHHHHHHHHTT-SEEEEE
T ss_pred HHHHhcCC-CEEEEECCC--CCCCC----------CHHHHHHHHHHhC--CCcccccCCCC-HHHHHHHHHcCCCEeehh
Confidence 66889999 999885443 34332 4566788888888 78766555445 678888888888876542
Q ss_pred cccccccCCCceeecC-cchhHHHHHhcCCCcchhhhhhHhhccCCCCCCcccHHHHHHHhhhccccEEEecCCCCC-CC
Q psy9039 123 SFVFGHMADEGLMNAQ-AGPLLRYRKQIGADNVLVFTDIKKKHSSHAITADVDITETAKAASFFLSDGLIITGNATG-DP 200 (251)
Q Consensus 123 ~~~~~~~~~~Gli~~d-a~e~~~~r~~l~~~~i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~~~~~D~v~VTG~~~g-~~ 200 (251)
-.++.++ ..++..+.+.+|.+-+-.+ | ..+..+.|...+++.++|-...-. ..
T Consensus 139 ---------~~~L~~~~l~~l~~~a~~lGle~lVEV---------h-------~~~El~~al~~~a~iiGINnRdL~tf~ 193 (254)
T PF00218_consen 139 ---------AAILSDDQLEELLELAHSLGLEALVEV---------H-------NEEELERALEAGADIIGINNRDLKTFE 193 (254)
T ss_dssp ---------GGGSGHHHHHHHHHHHHHTT-EEEEEE---------S-------SHHHHHHHHHTT-SEEEEESBCTTTCC
T ss_pred ---------HHhCCHHHHHHHHHHHHHcCCCeEEEE---------C-------CHHHHHHHHHcCCCEEEEeCccccCcc
Confidence 1122223 3678888999987332221 1 233345555668999999765322 23
Q ss_pred CCHHHHHHHHhcC--CCCEEEecCC-ChHhHHHhhc--CCEEEEeceEeecCe
Q psy9039 201 ADVSQLMSVKNAV--DLPILIGSGV-TSDNVEHYMT--ADALIIGSHFKQGGR 248 (251)
Q Consensus 201 ~~~~~l~~vr~~~--~~PV~vG~GI-~~~~v~~~~~--ADGvIVGS~~~~~g~ 248 (251)
.+.+...++.... +..++.-+|| +++++..+.. +||+.||++|++..+
T Consensus 194 vd~~~~~~l~~~ip~~~~~iseSGI~~~~d~~~l~~~G~davLVGe~lm~~~d 246 (254)
T PF00218_consen 194 VDLNRTEELAPLIPKDVIVISESGIKTPEDARRLARAGADAVLVGEALMRSPD 246 (254)
T ss_dssp BHTHHHHHHHCHSHTTSEEEEESS-SSHHHHHHHCTTT-SEEEESHHHHTSSS
T ss_pred cChHHHHHHHhhCccceeEEeecCCCCHHHHHHHHHCCCCEEEECHHHhCCCC
Confidence 3445555666554 5889999999 7999999986 999999999988653
|
1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A .... |
| >cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2 | Back alignment and domain information |
|---|
Probab=97.83 E-value=2.7e-05 Score=71.87 Aligned_cols=46 Identities=11% Similarity=0.245 Sum_probs=39.8
Q ss_pred HHHHHHHhcCCCCEEEecCC-ChHhHHHhhc---CCEEEEeceEeecCee
Q psy9039 204 SQLMSVKNAVDLPILIGSGV-TSDNVEHYMT---ADALIIGSHFKQGGRT 249 (251)
Q Consensus 204 ~~l~~vr~~~~~PV~vG~GI-~~~~v~~~~~---ADGvIVGS~~~~~g~~ 249 (251)
+..+++|+.+++||+++++| +++++.+++. ||.|-+|-.|+.|-.|
T Consensus 282 ~~~~~ik~~v~iPVi~~G~i~t~~~a~~~l~~g~aD~V~lgR~~iadP~~ 331 (338)
T cd04733 282 EFAEKIRKVTKTPLMVTGGFRTRAAMEQALASGAVDGIGLARPLALEPDL 331 (338)
T ss_pred HHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHcCCCCeeeeChHhhhCccH
Confidence 56678999999999999999 6999999984 9999999988877543
|
Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. |
| >cd00945 Aldolase_Class_I Class I aldolases | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00018 Score=60.04 Aligned_cols=66 Identities=20% Similarity=0.201 Sum_probs=47.4
Q ss_pred HHHHHHHhhhccccEEEecCCCCCCCCCHHHHHHHHhcC--CCCEEEecCCC-hHhHHHhhc--CCEEEEe
Q psy9039 175 ITETAKAASFFLSDGLIITGNATGDPADVSQLMSVKNAV--DLPILIGSGVT-SDNVEHYMT--ADALIIG 240 (251)
Q Consensus 175 i~~~a~~a~~~~~D~v~VTG~~~g~~~~~~~l~~vr~~~--~~PV~vG~GI~-~~~v~~~~~--ADGvIVG 240 (251)
+.+.++.+...++|++-.+........+.+.++++++.. ++|+++.+|++ ++++.+.+. |+|+++|
T Consensus 131 ~~~~~~~~~~~g~~~iK~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~gg~~~~~~~~~~~~~Ga~g~~~g 201 (201)
T cd00945 131 IAKAARIAAEAGADFIKTSTGFGGGGATVEDVKLMKEAVGGRVGVKAAGGIKTLEDALAAIEAGADGIGTS 201 (201)
T ss_pred HHHHHHHHHHhCCCEEEeCCCCCCCCCCHHHHHHHHHhcccCCcEEEECCCCCHHHHHHHHHhccceeecC
Confidence 333333444468999877654333334677888888776 67999999995 888888885 9999876
|
The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin. |
| >PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00034 Score=66.42 Aligned_cols=154 Identities=19% Similarity=0.189 Sum_probs=88.0
Q ss_pred HHHHHhCCCCccEEEEEeeC-ChHHH---HHHHHHcCccceecccccccccCC--Cce-eecC---cchhHHHHHhcCCC
Q psy9039 83 AEIRKVLPPSVPVGVQILSG-CNKAA---LATAQAAGLDFIRAESFVFGHMAD--EGL-MNAQ---AGPLLRYRKQIGAD 152 (251)
Q Consensus 83 ~~vr~~~~~~~P~Gvn~~~N-~~~~~---~~ia~a~g~~Fir~~~~~~~~~~~--~Gl-i~~d---a~e~~~~r~~l~~~ 152 (251)
+++++..++ .|+.+++.-+ ....- .......|++++..|..|-..... .|. +.-+ ..++.+.-++. -
T Consensus 91 ~~~~~~~~~-~p~i~si~g~~~~~~~~~~a~~~~~~g~d~ielN~scP~~~~~~~~g~~~~~~~~~~~~i~~~v~~~--~ 167 (420)
T PRK08318 91 RRVKRDYPD-RALIASIMVECNEEEWKEIAPLVEETGADGIELNFGCPHGMSERGMGSAVGQVPELVEMYTRWVKRG--S 167 (420)
T ss_pred HHHHhhCCC-ceEEEEeccCCCHHHHHHHHHHHHhcCCCEEEEeCCCCCCccccCCcccccCCHHHHHHHHHHHHhc--c
Confidence 345444433 4888887765 32111 122233568899987544321111 111 1122 22233222221 1
Q ss_pred cchhhhhhHhhccCCCCCCcccHHHHHHHhhhccccEEEecCC--------------------CC--C-C--CC----CH
Q psy9039 153 NVLVFTDIKKKHSSHAITADVDITETAKAASFFLSDGLIITGN--------------------AT--G-D--PA----DV 203 (251)
Q Consensus 153 ~i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~~~~~D~v~VTG~--------------------~~--g-~--~~----~~ 203 (251)
.+.++. |-+ | ....+.++++.++..|+|++..+.+ ++ | . ++ .+
T Consensus 168 ~~Pv~v----Kl~-p---~~~~~~~~a~~~~~~Gadgi~~~Nt~~~~~~id~~~~~~~p~~~~~~~~gg~SG~a~~p~~l 239 (420)
T PRK08318 168 RLPVIV----KLT-P---NITDIREPARAAKRGGADAVSLINTINSITGVDLDRMIPMPIVNGKSSHGGYCGPAVKPIAL 239 (420)
T ss_pred CCcEEE----EcC-C---CcccHHHHHHHHHHCCCCEEEEecccCccccccccccCCCceecCCCCcccccchhhhHHHH
Confidence 233332 221 1 1124677888777789999884221 11 1 1 11 25
Q ss_pred HHHHHHHhcC---CCCEEEecCC-ChHhHHHhhc--CCEEEEeceEeecC
Q psy9039 204 SQLMSVKNAV---DLPILIGSGV-TSDNVEHYMT--ADALIIGSHFKQGG 247 (251)
Q Consensus 204 ~~l~~vr~~~---~~PV~vG~GI-~~~~v~~~~~--ADGvIVGS~~~~~g 247 (251)
+.+.++++.+ ++||+.-||| |.+++.+++. ||+|.|||++..+|
T Consensus 240 ~~v~~~~~~~~~~~ipIig~GGI~s~~da~e~i~aGA~~Vqi~ta~~~~g 289 (420)
T PRK08318 240 NMVAEIARDPETRGLPISGIGGIETWRDAAEFILLGAGTVQVCTAAMQYG 289 (420)
T ss_pred HHHHHHHhccccCCCCEEeecCcCCHHHHHHHHHhCCChheeeeeeccCC
Confidence 7788898876 7999999999 7899888885 99999999998865
|
|
| >cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF) | Back alignment and domain information |
|---|
Probab=97.76 E-value=7.3e-05 Score=65.64 Aligned_cols=75 Identities=21% Similarity=0.279 Sum_probs=58.8
Q ss_pred cHHHHHHHhhhccccEEEecCCC---CCCCCCHHHHHHHHhcCCCCEEEecCC-ChHhHHHhhc--CCEEEEeceEeecC
Q psy9039 174 DITETAKAASFFLSDGLIITGNA---TGDPADVSQLMSVKNAVDLPILIGSGV-TSDNVEHYMT--ADALIIGSHFKQGG 247 (251)
Q Consensus 174 ~i~~~a~~a~~~~~D~v~VTG~~---~g~~~~~~~l~~vr~~~~~PV~vG~GI-~~~~v~~~~~--ADGvIVGS~~~~~g 247 (251)
...++++.....|+|.+.++.-. ++.+.+.+.++++++.+++||+++||| +.+++.+++. ||++++||.+.++-
T Consensus 28 d~~~~a~~~~~~G~~~i~i~d~~~~~~~~~~~~~~i~~i~~~~~~pv~~~GGI~s~~d~~~~l~~G~~~v~ig~~~~~~p 107 (243)
T cd04731 28 DPVELAKRYNEQGADELVFLDITASSEGRETMLDVVERVAEEVFIPLTVGGGIRSLEDARRLLRAGADKVSINSAAVENP 107 (243)
T ss_pred CHHHHHHHHHHCCCCEEEEEcCCcccccCcccHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCceEEECchhhhCh
Confidence 34556666666789977776543 233456788999999999999999999 6899999985 99999999988764
Q ss_pred e
Q psy9039 248 R 248 (251)
Q Consensus 248 ~ 248 (251)
.
T Consensus 108 ~ 108 (243)
T cd04731 108 E 108 (243)
T ss_pred H
Confidence 3
|
Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria. |
| >cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00035 Score=65.75 Aligned_cols=171 Identities=13% Similarity=0.181 Sum_probs=100.8
Q ss_pred hHHHHHHHHHhhCCCCcCCCCccEEEEeecC-CC-------CccccCCCch-----HHHHHHHHHHHHHHHhCCCCccEE
Q psy9039 30 NMTRLCAEIRKVLPPSVPVGVQHGVIVENMH-DV-------PYVLEAESGP-----EITANMTRLCAEIRKVLPPSVPVG 96 (251)
Q Consensus 30 ~~~~i~~~a~~~a~~l~~~Gv~D~i~ieN~~-~~-------Pf~~p~~~gp-----~i~aa~~~~i~~vr~~~~~~~P~G 96 (251)
.++.+++.-.+.|+..+++|+ |+|+|---. |. |++....|.+ -...-+.++++++|+.+++..|++
T Consensus 144 eI~~ii~~f~~AA~ra~~AGf-DgVEih~ah~GyLl~qFLSp~~N~RtDeyGGslenR~rf~~eii~~vr~~~g~~f~v~ 222 (382)
T cd02931 144 EVETFVGKFGESAVIAKEAGF-DGVEIHAVHEGYLLDQFTISLFNKRTDKYGGSLENRLRFAIEIVEEIKARCGEDFPVS 222 (382)
T ss_pred HHHHHHHHHHHHHHHHHHcCC-CEEEEeccccChHHHHhcCCccCCCCCcCCCCHHHHhHHHHHHHHHHHHhcCCCceEE
Confidence 467778888888888899999 999984322 43 4443333321 122333468899999875335777
Q ss_pred EEEeeCChHHHHHHHHHcCccceecccccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHhhccCCCCCCcccHH
Q psy9039 97 VQILSGCNKAALATAQAAGLDFIRAESFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSSHAITADVDIT 176 (251)
Q Consensus 97 vn~~~N~~~~~~~ia~a~g~~Fir~~~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~k~~~~~~~~~~~i~ 176 (251)
+=+-.. +++... ..+- .+. ++. . +.|. +. +...
T Consensus 223 vri~~~--------------~~~~~~--------~~~~-~~~-~~~-------~------------~~g~---~~-e~~~ 255 (382)
T cd02931 223 LRYSVK--------------SYIKDL--------RQGA-LPG-EEF-------Q------------EKGR---DL-EEGL 255 (382)
T ss_pred EEEech--------------hhcccc--------cccc-ccc-ccc-------c------------cCCC---CH-HHHH
Confidence 764211 121100 0000 000 000 0 0000 00 1123
Q ss_pred HHHHHhhhccccEEEecCCCCCC-----C-----CC--HHHHHHHHhcCCCCEEEecCC-ChHhHHHhhc---CCEEEEe
Q psy9039 177 ETAKAASFFLSDGLIITGNATGD-----P-----AD--VSQLMSVKNAVDLPILIGSGV-TSDNVEHYMT---ADALIIG 240 (251)
Q Consensus 177 ~~a~~a~~~~~D~v~VTG~~~g~-----~-----~~--~~~l~~vr~~~~~PV~vG~GI-~~~~v~~~~~---ADGvIVG 240 (251)
++++..+..|+|.+-||+..... + .. ....+++|+.+++||++.||| +++++.++++ ||.|-+|
T Consensus 256 ~~~~~l~~~gvD~l~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~pvi~~G~i~~~~~~~~~l~~g~~D~V~~g 335 (382)
T cd02931 256 KAAKILEEAGYDALDVDAGSYDAWYWNHPPMYQKKGMYLPYCKALKEVVDVPVIMAGRMEDPELASEAINEGIADMISLG 335 (382)
T ss_pred HHHHHHHHhCCCEEEeCCCCCcccccccCCccCCcchhHHHHHHHHHHCCCCEEEeCCCCCHHHHHHHHHcCCCCeeeec
Confidence 34444444588999888643211 1 11 356778999999999999999 7899999984 9999999
Q ss_pred ceEeecCe
Q psy9039 241 SHFKQGGR 248 (251)
Q Consensus 241 S~~~~~g~ 248 (251)
-.|..|-.
T Consensus 336 R~~ladP~ 343 (382)
T cd02931 336 RPLLADPD 343 (382)
T ss_pred hHhHhCcc
Confidence 99887744
|
Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae. |
| >PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional | Back alignment and domain information |
|---|
Probab=97.74 E-value=7.7e-05 Score=66.01 Aligned_cols=73 Identities=21% Similarity=0.252 Sum_probs=58.5
Q ss_pred HHHHHHHhhhccccEEEecCCC---CCCCCCHHHHHHHHhcCCCCEEEecCC-ChHhHHHhhc--CCEEEEeceEeecC
Q psy9039 175 ITETAKAASFFLSDGLIITGNA---TGDPADVSQLMSVKNAVDLPILIGSGV-TSDNVEHYMT--ADALIIGSHFKQGG 247 (251)
Q Consensus 175 i~~~a~~a~~~~~D~v~VTG~~---~g~~~~~~~l~~vr~~~~~PV~vG~GI-~~~~v~~~~~--ADGvIVGS~~~~~g 247 (251)
..++++....+|++.+.++.-. ++...+++.++++++.+++||+++||| +.+++.+++. ||++++||.+.++-
T Consensus 32 ~~~~a~~~~~~G~~~i~i~dl~~~~~~~~~~~~~i~~i~~~~~ipv~~~GGi~s~~~~~~~l~~Ga~~Viigt~~l~~p 110 (253)
T PRK02083 32 PVELAKRYNEEGADELVFLDITASSEGRDTMLDVVERVAEQVFIPLTVGGGIRSVEDARRLLRAGADKVSINSAAVANP 110 (253)
T ss_pred HHHHHHHHHHcCCCEEEEEeCCcccccCcchHHHHHHHHHhCCCCEEeeCCCCCHHHHHHHHHcCCCEEEEChhHhhCc
Confidence 3455666556789998887753 234456789999999999999999999 6899999986 99999999887653
|
|
| >PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated | Back alignment and domain information |
|---|
Probab=97.73 E-value=9.4e-05 Score=64.28 Aligned_cols=72 Identities=24% Similarity=0.386 Sum_probs=55.9
Q ss_pred HHHHHHHhhhccccEEEecC---CCCCCCCCHHHHHHHHhcCCCCEEEecCC-ChHhHHHhhc--CCEEEEeceEeec
Q psy9039 175 ITETAKAASFFLSDGLIITG---NATGDPADVSQLMSVKNAVDLPILIGSGV-TSDNVEHYMT--ADALIIGSHFKQG 246 (251)
Q Consensus 175 i~~~a~~a~~~~~D~v~VTG---~~~g~~~~~~~l~~vr~~~~~PV~vG~GI-~~~~v~~~~~--ADGvIVGS~~~~~ 246 (251)
..++++.-..+|+|.+.++. ...+...+.+.++++++.+++||++|+|| +.+++++++. ||++++||++..+
T Consensus 32 ~~~~a~~~~~~g~~~i~v~dld~~~~g~~~~~~~i~~i~~~~~~pv~~~GGI~~~ed~~~~~~~Ga~~vilg~~~l~~ 109 (233)
T PRK00748 32 PVAQAKAWEDQGAKWLHLVDLDGAKAGKPVNLELIEAIVKAVDIPVQVGGGIRSLETVEALLDAGVSRVIIGTAAVKN 109 (233)
T ss_pred HHHHHHHHHHcCCCEEEEEeCCccccCCcccHHHHHHHHHHCCCCEEEcCCcCCHHHHHHHHHcCCCEEEECchHHhC
Confidence 34444443336888887765 33344567889999999999999999999 6899999996 9999999998765
|
|
| >cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3 | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00048 Score=63.85 Aligned_cols=46 Identities=20% Similarity=0.302 Sum_probs=40.0
Q ss_pred HHHHHHHHhcCCCCEEEecCC-ChHhHHHhhc---CCEEEEeceEeecCe
Q psy9039 203 VSQLMSVKNAVDLPILIGSGV-TSDNVEHYMT---ADALIIGSHFKQGGR 248 (251)
Q Consensus 203 ~~~l~~vr~~~~~PV~vG~GI-~~~~v~~~~~---ADGvIVGS~~~~~g~ 248 (251)
.+.++++|+.+++||++.||| +++.+.++++ ||+|-+|-.++.|-.
T Consensus 274 ~~~~~~ik~~~~ipvi~~G~i~~~~~~~~~l~~~~~D~V~~gR~~ladP~ 323 (343)
T cd04734 274 LPLAARIKQAVDLPVFHAGRIRDPAEAEQALAAGHADMVGMTRAHIADPH 323 (343)
T ss_pred HHHHHHHHHHcCCCEEeeCCCCCHHHHHHHHHcCCCCeeeecHHhHhCcc
Confidence 467788999999999999999 7899999985 999999998877644
|
Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase. |
| >COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00076 Score=59.41 Aligned_cols=180 Identities=17% Similarity=0.219 Sum_probs=112.1
Q ss_pred CCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHHHHHHHHcCccceecc
Q psy9039 43 PPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQAAGLDFIRAE 122 (251)
Q Consensus 43 ~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g~~Fir~~ 122 (251)
+.+++-|+ .-+-+-...|- |. -+|. ...+++++.+.++ .|+=+-.=.++ .....-....|.+.+-..
T Consensus 38 ~~~~~~Ga-~~lHlVDLdgA-~~----g~~~----n~~~i~~i~~~~~--~~vQvGGGIRs-~~~v~~ll~~G~~rViiG 104 (241)
T COG0106 38 KKWSDQGA-EWLHLVDLDGA-KA----GGPR----NLEAIKEILEATD--VPVQVGGGIRS-LEDVEALLDAGVARVIIG 104 (241)
T ss_pred HHHHHcCC-cEEEEeecccc-cc----CCcc----cHHHHHHHHHhCC--CCEEeeCCcCC-HHHHHHHHHCCCCEEEEe
Confidence 55666777 76655322222 10 1121 3356677777777 67666544444 344444455666655542
Q ss_pred cccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHhh----ccCCCCCCcccHHHHHHHhhhccccEEEecCCCCC
Q psy9039 123 SFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKK----HSSHAITADVDITETAKAASFFLSDGLIITGNATG 198 (251)
Q Consensus 123 ~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~k----~~~~~~~~~~~i~~~a~~a~~~~~D~v~VTG~~~g 198 (251)
+ ...-+...+.+.++++| +.|-+==|.... +|.. ..++..+.+.++.-+.+|+..++.|-....
T Consensus 105 ----t------~av~~p~~v~~~~~~~g-~rivv~lD~r~g~vav~GW~-e~s~~~~~~l~~~~~~~g~~~ii~TdI~~D 172 (241)
T COG0106 105 ----T------AAVKNPDLVKELCEEYG-DRIVVALDARDGKVAVSGWQ-EDSGVELEELAKRLEEVGLAHILYTDISRD 172 (241)
T ss_pred ----c------ceecCHHHHHHHHHHcC-CcEEEEEEccCCcccccccc-ccccCCHHHHHHHHHhcCCCeEEEEecccc
Confidence 1 11445677888899998 555442222221 1221 234456677766666678999999885433
Q ss_pred C---CCCHHHHHHHHhcCCCCEEEecCC-ChHhHHHhhc---CCEEEEeceEeecC
Q psy9039 199 D---PADVSQLMSVKNAVDLPILIGSGV-TSDNVEHYMT---ADALIIGSHFKQGG 247 (251)
Q Consensus 199 ~---~~~~~~l~~vr~~~~~PV~vG~GI-~~~~v~~~~~---ADGvIVGS~~~~~g 247 (251)
. .++.+++.++.+.+++||++.||| +-++++.+.. .+|+|||++|-.+.
T Consensus 173 Gtl~G~n~~l~~~l~~~~~ipviaSGGv~s~~Di~~l~~~~G~~GvIvG~ALy~g~ 228 (241)
T COG0106 173 GTLSGPNVDLVKELAEAVDIPVIASGGVSSLDDIKALKELSGVEGVIVGRALYEGK 228 (241)
T ss_pred cccCCCCHHHHHHHHHHhCcCEEEecCcCCHHHHHHHHhcCCCcEEEEehHHhcCC
Confidence 2 356788999999999999999999 5688887764 79999999996543
|
|
| >PRK09517 multifunctional thiamine-phosphate pyrophosphorylase/synthase/phosphomethylpyrimidine kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.0003 Score=71.63 Aligned_cols=60 Identities=20% Similarity=0.250 Sum_probs=49.3
Q ss_pred cccEEEe-----cCCCCCCCC--CHHHHHHHHhcCC---CCEEEecCCChHhHHHhhc--CCEEEEeceEee
Q psy9039 186 LSDGLII-----TGNATGDPA--DVSQLMSVKNAVD---LPILIGSGVTSDNVEHYMT--ADALIIGSHFKQ 245 (251)
Q Consensus 186 ~~D~v~V-----TG~~~g~~~--~~~~l~~vr~~~~---~PV~vG~GI~~~~v~~~~~--ADGvIVGS~~~~ 245 (251)
|+|++++ |.++.+..+ .++.++++++.++ +||++-|||+++|+.++.+ |||+.|.|+|.+
T Consensus 128 gaDYi~~Gpvf~T~tK~~~~~~lG~~~l~~~~~~~~~~~iPv~AiGGI~~~~~~~~~~~Ga~giAvisai~~ 199 (755)
T PRK09517 128 LPDVIGIGPVASTATKPDAPPALGVDGIAEIAAVAQDHGIASVAIGGVGLRNAAELAATGIDGLCVVSAIMA 199 (755)
T ss_pred CCCEEEECCccccCCCCCCCCCCCHHHHHHHHHhcCcCCCCEEEECCCCHHHHHHHHHcCCCEEEEehHhhC
Confidence 4898876 445555433 5688998888887 9999999999999999996 999999999864
|
|
| >PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00052 Score=61.34 Aligned_cols=182 Identities=16% Similarity=0.165 Sum_probs=109.0
Q ss_pred CCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHHHHHHHHcCccceecc
Q psy9039 43 PPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQAAGLDFIRAE 122 (251)
Q Consensus 43 ~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g~~Fir~~ 122 (251)
+.+.+.|+ ..|.|-...+ ..+ . ...+++++++ ++ .|+-+=.=.. .+...-....|++-+-.+
T Consensus 50 ~~~~~~Ga-~~lHvVDLdg---g~~-----~----n~~~i~~i~~-~~--~~vqvGGGIR--~e~i~~~l~~Ga~rViig 111 (262)
T PLN02446 50 EMYKRDGL-TGGHVIMLGA---DDA-----S----LAAALEALRA-YP--GGLQVGGGVN--SENAMSYLDAGASHVIVT 111 (262)
T ss_pred HHHHHCCC-CEEEEEECCC---CCc-----c----cHHHHHHHHh-CC--CCEEEeCCcc--HHHHHHHHHcCCCEEEEc
Confidence 66788999 9998765543 111 1 2556777776 66 5665543222 233444445666665543
Q ss_pred cccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHhh--------ccCCCCCCcccHHHHHHHhhhccccEEEecC
Q psy9039 123 SFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKK--------HSSHAITADVDITETAKAASFFLSDGLIITG 194 (251)
Q Consensus 123 ~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~k--------~~~~~~~~~~~i~~~a~~a~~~~~D~v~VTG 194 (251)
. .+-.++-+ +..-+.+..+++|...|-+--|+..+ +|-. ..++.++.+.+......+++.+++|-
T Consensus 112 T----~Av~~~~~--~p~~v~~~~~~~G~~~IvvsiD~k~~~g~~~Va~~GW~-~~t~~~~~e~~~~~~~~g~~eii~Td 184 (262)
T PLN02446 112 S----YVFRDGQI--DLERLKDLVRLVGKQRLVLDLSCRKKDGRYYVVTDRWQ-KFSDLAVDEETLEFLAAYCDEFLVHG 184 (262)
T ss_pred h----HHHhCCCC--CHHHHHHHHHHhCCCCEEEEEEEEecCCCEEEEECCCc-ccCCCCHHHHHHHHHHhCCCEEEEEE
Confidence 1 11111212 14455667777775444332233211 1211 12344555554444445799999988
Q ss_pred CCC-C--CCCCHHHHHHHHhcCCCCEEEecCC-ChHhHHHhhc----CCEEEEeceE-eecCee
Q psy9039 195 NAT-G--DPADVSQLMSVKNAVDLPILIGSGV-TSDNVEHYMT----ADALIIGSHF-KQGGRT 249 (251)
Q Consensus 195 ~~~-g--~~~~~~~l~~vr~~~~~PV~vG~GI-~~~~v~~~~~----ADGvIVGS~~-~~~g~~ 249 (251)
... | ..++.++++++++.+++||++.||| +.+++.++.. ..|+|||++| .-+|++
T Consensus 185 I~rDGtl~G~d~el~~~l~~~~~ipVIASGGv~sleDi~~L~~~g~g~~gvIvGkAl~~y~g~~ 248 (262)
T PLN02446 185 VDVEGKRLGIDEELVALLGEHSPIPVTYAGGVRSLDDLERVKVAGGGRVDVTVGSALDIFGGNL 248 (262)
T ss_pred EcCCCcccCCCHHHHHHHHhhCCCCEEEECCCCCHHHHHHHHHcCCCCEEEEEEeeHHHhCCCc
Confidence 533 3 2457899999999999999999999 6899988875 3899999998 244443
|
|
| >PRK08649 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00042 Score=64.91 Aligned_cols=121 Identities=21% Similarity=0.313 Sum_probs=68.5
Q ss_pred HHHHHHHHHcCccceeccccc--ccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHhhccCCCCCCcccHHHHHHHh
Q psy9039 105 KAALATAQAAGLDFIRAESFV--FGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSSHAITADVDITETAKAA 182 (251)
Q Consensus 105 ~~~~~ia~a~g~~Fir~~~~~--~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~k~~~~~~~~~~~i~~~a~~a 182 (251)
......+...|++++-....+ ..+.+..+ +...+.+..++. ++++++ .+....+.++.+
T Consensus 144 ~e~a~~l~eaGvd~I~vhgrt~~~~h~~~~~----~~~~i~~~ik~~---~ipVIa------------G~V~t~e~A~~l 204 (368)
T PRK08649 144 QELAPTVVEAGVDLFVIQGTVVSAEHVSKEG----EPLNLKEFIYEL---DVPVIV------------GGCVTYTTALHL 204 (368)
T ss_pred HHHHHHHHHCCCCEEEEeccchhhhccCCcC----CHHHHHHHHHHC---CCCEEE------------eCCCCHHHHHHH
Confidence 344556667888888763110 00111111 233345555554 345542 112223445555
Q ss_pred hhccccEEEecCCCCCC-----------CCCHHHHHHHHhc----------CCCCEEEecCC-ChHhHHHhhc--CCEEE
Q psy9039 183 SFFLSDGLIITGNATGD-----------PADVSQLMSVKNA----------VDLPILIGSGV-TSDNVEHYMT--ADALI 238 (251)
Q Consensus 183 ~~~~~D~v~VTG~~~g~-----------~~~~~~l~~vr~~----------~~~PV~vG~GI-~~~~v~~~~~--ADGvI 238 (251)
...|||++.+ |...|. -+.+..+.++.+. .++||++.||| ++.++.+.+. ||+|.
T Consensus 205 ~~aGAD~V~V-G~G~Gs~~~t~~~~g~g~p~~~ai~~~~~a~~~~l~~~~~~~vpVIAdGGI~~~~diakAlalGAd~Vm 283 (368)
T PRK08649 205 MRTGAAGVLV-GIGPGAACTSRGVLGIGVPMATAIADVAAARRDYLDETGGRYVHVIADGGIGTSGDIAKAIACGADAVM 283 (368)
T ss_pred HHcCCCEEEE-CCCCCcCCCCcccCCCCcCHHHHHHHHHHHHHHhhhhhcCCCCeEEEeCCCCCHHHHHHHHHcCCCeec
Confidence 5579999977 422220 1223334443321 15899999999 7899888886 99999
Q ss_pred EeceEee
Q psy9039 239 IGSHFKQ 245 (251)
Q Consensus 239 VGS~~~~ 245 (251)
+||.|..
T Consensus 284 ~Gs~fa~ 290 (368)
T PRK08649 284 LGSPLAR 290 (368)
T ss_pred ccchhcc
Confidence 9999975
|
|
| >TIGR00742 yjbN tRNA dihydrouridine synthase A | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00048 Score=63.29 Aligned_cols=71 Identities=15% Similarity=0.291 Sum_probs=55.4
Q ss_pred HHHHHHhhhccccEEEecCCCC---CCC---------CCHHHHHHHHhcC-CCCEEEecCC-ChHhHHHhhc-CCEEEEe
Q psy9039 176 TETAKAASFFLSDGLIITGNAT---GDP---------ADVSQLMSVKNAV-DLPILIGSGV-TSDNVEHYMT-ADALIIG 240 (251)
Q Consensus 176 ~~~a~~a~~~~~D~v~VTG~~~---g~~---------~~~~~l~~vr~~~-~~PV~vG~GI-~~~~v~~~~~-ADGvIVG 240 (251)
.+.++.++..|+|++.|.|... |.. .+++.+.++|+.+ ++||+..||| |.+++.+.+. ||||.+|
T Consensus 144 ~~~~~~l~~~G~~~itvHgRt~~~qg~sg~~~~~~~~~~~~~i~~vk~~~~~ipVi~NGdI~s~~da~~~l~g~dgVMig 223 (318)
T TIGR00742 144 CDFVEIVSGKGCQNFIVHARKAWLSGLSPKENREIPPLRYERVYQLKKDFPHLTIEINGGIKNSEQIKQHLSHVDGVMVG 223 (318)
T ss_pred HHHHHHHHHcCCCEEEEeCCchhhcCCCccccccCCchhHHHHHHHHHhCCCCcEEEECCcCCHHHHHHHHhCCCEEEEC
Confidence 3445555557999999988642 221 1457788999887 8999999999 7999999998 9999999
Q ss_pred ceEeec
Q psy9039 241 SHFKQG 246 (251)
Q Consensus 241 S~~~~~ 246 (251)
..+..+
T Consensus 224 Rgal~n 229 (318)
T TIGR00742 224 REAYEN 229 (318)
T ss_pred HHHHhC
Confidence 987665
|
Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. |
| >PRK13523 NADPH dehydrogenase NamA; Provisional | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00034 Score=64.76 Aligned_cols=154 Identities=15% Similarity=0.154 Sum_probs=95.4
Q ss_pred hHHHHHHHHHhhCCCCcCCCCccEEEEeecCC---------CCccccCCC---ch-H-HHHHHHHHHHHHHHhCCCCccE
Q psy9039 30 NMTRLCAEIRKVLPPSVPVGVQHGVIVENMHD---------VPYVLEAES---GP-E-ITANMTRLCAEIRKVLPPSVPV 95 (251)
Q Consensus 30 ~~~~i~~~a~~~a~~l~~~Gv~D~i~ieN~~~---------~Pf~~p~~~---gp-~-i~aa~~~~i~~vr~~~~~~~P~ 95 (251)
.++.+++.-.+.|+.+.++|+ |+|+| ..+ -|++....| |. + ...=..++++++|+..+ .|+
T Consensus 136 eI~~ii~~f~~aA~~a~~aGf-DgVei--h~ahGyLl~qFlSp~~N~RtD~yGGslenR~Rf~~eii~~ir~~~~--~~v 210 (337)
T PRK13523 136 QIKETVLAFKQAAVRAKEAGF-DVIEI--HGAHGYLINEFLSPLSNKRTDEYGGSPENRYRFLREIIDAVKEVWD--GPL 210 (337)
T ss_pred HHHHHHHHHHHHHHHHHHcCC-CEEEE--ccccchHHHHhcCCccCCcCCCCCCCHHHHHHHHHHHHHHHHHhcC--CCe
Confidence 467888888888898999999 99998 222 365533222 21 1 11222346777777764 466
Q ss_pred EEEEeeCChHHHHHHHHHcCccceecccccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHhhccCCCCCCcccH
Q psy9039 96 GVQILSGCNKAALATAQAAGLDFIRAESFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSSHAITADVDI 175 (251)
Q Consensus 96 Gvn~~~N~~~~~~~ia~a~g~~Fir~~~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~k~~~~~~~~~~~i 175 (251)
++=+ |. .++.. .|+ + .+..
T Consensus 211 ~vRi--s~------------~d~~~-----------~G~---~---------------------------------~~e~ 229 (337)
T PRK13523 211 FVRI--SA------------SDYHP-----------GGL---T---------------------------------VQDY 229 (337)
T ss_pred EEEe--cc------------cccCC-----------CCC---C---------------------------------HHHH
Confidence 6543 21 01211 010 0 0111
Q ss_pred HHHHHHhhhccccEEEecCCCCC----C-CC--CHHHHHHHHhcCCCCEEEecCC-ChHhHHHhhc---CCEEEEeceEe
Q psy9039 176 TETAKAASFFLSDGLIITGNATG----D-PA--DVSQLMSVKNAVDLPILIGSGV-TSDNVEHYMT---ADALIIGSHFK 244 (251)
Q Consensus 176 ~~~a~~a~~~~~D~v~VTG~~~g----~-~~--~~~~l~~vr~~~~~PV~vG~GI-~~~~v~~~~~---ADGvIVGS~~~ 244 (251)
.++++..+..|+|.+-||+.... . .+ ..+..+++|+.+++||++.|+| +++.+.+++. ||.|-+|-.++
T Consensus 230 ~~i~~~l~~~gvD~i~vs~g~~~~~~~~~~~~~~~~~~~~ik~~~~ipVi~~G~i~~~~~a~~~l~~g~~D~V~~gR~~i 309 (337)
T PRK13523 230 VQYAKWMKEQGVDLIDVSSGAVVPARIDVYPGYQVPFAEHIREHANIATGAVGLITSGAQAEEILQNNRADLIFIGRELL 309 (337)
T ss_pred HHHHHHHHHcCCCEEEeCCCCCCCCCCCCCccccHHHHHHHHhhcCCcEEEeCCCCCHHHHHHHHHcCCCChHHhhHHHH
Confidence 22333333357888888775311 0 11 3567788999999999999999 7899999994 99999999888
Q ss_pred ecCee
Q psy9039 245 QGGRT 249 (251)
Q Consensus 245 ~~g~~ 249 (251)
-|-.|
T Consensus 310 adP~~ 314 (337)
T PRK13523 310 RNPYF 314 (337)
T ss_pred hCccH
Confidence 77543
|
|
| >COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00039 Score=61.73 Aligned_cols=165 Identities=18% Similarity=0.194 Sum_probs=107.4
Q ss_pred CCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHHHHHHHHcCccceecc
Q psy9039 43 PPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQAAGLDFIRAE 122 (251)
Q Consensus 43 ~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g~~Fir~~ 122 (251)
+.++++|+ ++|=|-. +-+|-+. .-+-++.+|+.++ .|+-.==|.-+ .++.-.|.+.|++.+-.-
T Consensus 73 ~~Ye~~GA-a~iSVLT--d~~~F~G----------s~e~L~~v~~~v~--~PvL~KDFiiD-~yQI~~Ar~~GADavLLI 136 (254)
T COG0134 73 KAYEEGGA-AAISVLT--DPKYFQG----------SFEDLRAVRAAVD--LPVLRKDFIID-PYQIYEARAAGADAVLLI 136 (254)
T ss_pred HHHHHhCC-eEEEEec--CccccCC----------CHHHHHHHHHhcC--CCeeeccCCCC-HHHHHHHHHcCcccHHHH
Confidence 67888999 9987633 3345443 3456688888888 79655444445 577888888888765541
Q ss_pred cccccccCCCceeec-CcchhHHHHHhcCCCcchhhhhhHhhccCCCCCCcccHHHHHHHhhhccccEEEecCCCC-CCC
Q psy9039 123 SFVFGHMADEGLMNA-QAGPLLRYRKQIGADNVLVFTDIKKKHSSHAITADVDITETAKAASFFLSDGLIITGNAT-GDP 200 (251)
Q Consensus 123 ~~~~~~~~~~Gli~~-da~e~~~~r~~l~~~~i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~~~~~D~v~VTG~~~-g~~ 200 (251)
. ..+.. ...++..+.+.+|.+-. + .....+.++.|...+++.++|-...- ...
T Consensus 137 ~---------~~L~~~~l~el~~~A~~LGm~~L-V---------------EVh~~eEl~rAl~~ga~iIGINnRdL~tf~ 191 (254)
T COG0134 137 V---------AALDDEQLEELVDRAHELGMEVL-V---------------EVHNEEELERALKLGAKIIGINNRDLTTLE 191 (254)
T ss_pred H---------HhcCHHHHHHHHHHHHHcCCeeE-E---------------EECCHHHHHHHHhCCCCEEEEeCCCcchhe
Confidence 1 11111 25777788888876221 1 11223344555557899988855422 123
Q ss_pred CCHHHHHHHHhcC--CCCEEEecCC-ChHhHHHhhc--CCEEEEeceEeecCe
Q psy9039 201 ADVSQLMSVKNAV--DLPILIGSGV-TSDNVEHYMT--ADALIIGSHFKQGGR 248 (251)
Q Consensus 201 ~~~~~l~~vr~~~--~~PV~vG~GI-~~~~v~~~~~--ADGvIVGS~~~~~g~ 248 (251)
.+++...++.... +.-++.-+|| |++++..+.. +||+.|||+|++..+
T Consensus 192 vdl~~t~~la~~~p~~~~~IsESGI~~~~dv~~l~~~ga~a~LVG~slM~~~~ 244 (254)
T COG0134 192 VDLETTEKLAPLIPKDVILISESGISTPEDVRRLAKAGADAFLVGEALMRADD 244 (254)
T ss_pred ecHHHHHHHHhhCCCCcEEEecCCCCCHHHHHHHHHcCCCEEEecHHHhcCCC
Confidence 4455545554443 4789999999 6999999996 999999999998754
|
|
| >cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00032 Score=65.20 Aligned_cols=70 Identities=21% Similarity=0.182 Sum_probs=49.9
Q ss_pred HHHhhhccccEEEecCC-C---CCC----CC---CHHHHHHHHhcCCCCEEEecCC-ChHhHHHhhc---CCEEEEeceE
Q psy9039 179 AKAASFFLSDGLIITGN-A---TGD----PA---DVSQLMSVKNAVDLPILIGSGV-TSDNVEHYMT---ADALIIGSHF 243 (251)
Q Consensus 179 a~~a~~~~~D~v~VTG~-~---~g~----~~---~~~~l~~vr~~~~~PV~vG~GI-~~~~v~~~~~---ADGvIVGS~~ 243 (251)
++..+.+++|.+-||+. . +.. .+ .....+++|+.+++||++++++ +++.+.++++ +|.|.+|-.+
T Consensus 230 ~~~Le~~G~d~i~vs~g~~e~~~~~~~~~~~~~~~~~~~~~ik~~v~iPVi~~G~i~~~~~a~~~i~~g~~D~V~~gR~~ 309 (353)
T cd02930 230 AKALEAAGADILNTGIGWHEARVPTIATSVPRGAFAWATAKLKRAVDIPVIASNRINTPEVAERLLADGDADMVSMARPF 309 (353)
T ss_pred HHHHHHcCCCEEEeCCCcCCCCCccccccCCchhhHHHHHHHHHhCCCCEEEcCCCCCHHHHHHHHHCCCCChhHhhHHH
Confidence 33334457888877642 1 100 01 1345678999999999999999 7899999995 9999999888
Q ss_pred eecCe
Q psy9039 244 KQGGR 248 (251)
Q Consensus 244 ~~~g~ 248 (251)
+.|-.
T Consensus 310 l~dP~ 314 (353)
T cd02930 310 LADPD 314 (353)
T ss_pred HHCcc
Confidence 77644
|
DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi |
| >cd04732 HisA HisA | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00015 Score=62.96 Aligned_cols=71 Identities=21% Similarity=0.390 Sum_probs=55.6
Q ss_pred HHHHHHhhhccccEEEecCC---CCCCCCCHHHHHHHHhcCCCCEEEecCC-ChHhHHHhhc--CCEEEEeceEeec
Q psy9039 176 TETAKAASFFLSDGLIITGN---ATGDPADVSQLMSVKNAVDLPILIGSGV-TSDNVEHYMT--ADALIIGSHFKQG 246 (251)
Q Consensus 176 ~~~a~~a~~~~~D~v~VTG~---~~g~~~~~~~l~~vr~~~~~PV~vG~GI-~~~~v~~~~~--ADGvIVGS~~~~~ 246 (251)
.++++.-..+|+|.+.|..- ..+...+.+.++++++.+++|+.+|+|| +++++.+++. ||.+++||....+
T Consensus 32 ~~~a~~~~~~g~d~l~v~dl~~~~~~~~~~~~~i~~i~~~~~~pv~~~GgI~~~e~~~~~~~~Gad~vvigs~~l~d 108 (234)
T cd04732 32 VEVAKKWEEAGAKWLHVVDLDGAKGGEPVNLELIEEIVKAVGIPVQVGGGIRSLEDIERLLDLGVSRVIIGTAAVKN 108 (234)
T ss_pred HHHHHHHHHcCCCEEEEECCCccccCCCCCHHHHHHHHHhcCCCEEEeCCcCCHHHHHHHHHcCCCEEEECchHHhC
Confidence 34455444468888888643 2334456789999999999999999999 6899999986 9999999988765
|
Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. |
| >cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00037 Score=64.20 Aligned_cols=70 Identities=23% Similarity=0.373 Sum_probs=52.5
Q ss_pred HHHHHHhhhccccEEEecCCCC----------C-C-------------CCCHHHHHHHHhcC-CCCEEEecCC-ChHhHH
Q psy9039 176 TETAKAASFFLSDGLIITGNAT----------G-D-------------PADVSQLMSVKNAV-DLPILIGSGV-TSDNVE 229 (251)
Q Consensus 176 ~~~a~~a~~~~~D~v~VTG~~~----------g-~-------------~~~~~~l~~vr~~~-~~PV~vG~GI-~~~~v~ 229 (251)
.+.++.....|+|++.|+|..- + . .+..+.+.++++.. ++||++.||| +..++.
T Consensus 192 ~~~a~~l~~~Gvd~I~vsG~GGt~~~~ie~~r~~~~~~~~~~~~~~~g~~t~~~l~~~~~~~~~ipIiasGGIr~~~dv~ 271 (326)
T cd02811 192 RETAKRLADAGVKAIDVAGAGGTSWARVENYRAKDSDQRLAEYFADWGIPTAASLLEVRSALPDLPLIASGGIRNGLDIA 271 (326)
T ss_pred HHHHHHHHHcCCCEEEECCCCCCcccccccccccccccccccccccccccHHHHHHHHHHHcCCCcEEEECCCCCHHHHH
Confidence 4556666668999999998410 0 0 01235677777777 8999999999 789988
Q ss_pred Hhhc--CCEEEEeceEee
Q psy9039 230 HYMT--ADALIIGSHFKQ 245 (251)
Q Consensus 230 ~~~~--ADGvIVGS~~~~ 245 (251)
+++. ||+|.+|+.|.+
T Consensus 272 kal~lGAd~V~i~~~~L~ 289 (326)
T cd02811 272 KALALGADLVGMAGPFLK 289 (326)
T ss_pred HHHHhCCCEEEEcHHHHH
Confidence 8885 999999998754
|
Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway. |
| >cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.0008 Score=62.68 Aligned_cols=70 Identities=30% Similarity=0.456 Sum_probs=53.7
Q ss_pred HHHHHHhhhccccEEEecCC--CC--CCCCCHHHHHHHHhcC--CCCEEEecCC-ChHhHHHhhc--CCEEEEeceEee
Q psy9039 176 TETAKAASFFLSDGLIITGN--AT--GDPADVSQLMSVKNAV--DLPILIGSGV-TSDNVEHYMT--ADALIIGSHFKQ 245 (251)
Q Consensus 176 ~~~a~~a~~~~~D~v~VTG~--~~--g~~~~~~~l~~vr~~~--~~PV~vG~GI-~~~~v~~~~~--ADGvIVGS~~~~ 245 (251)
.+.++.+...|+|+++|+|. +. +.+..++.+.++++.. ++||++-||| +..++.+++. ||+|.+|+.|..
T Consensus 232 ~~dA~~a~~~G~d~I~vsnhGGr~ld~~~~~~~~l~~i~~a~~~~i~vi~dGGIr~g~Di~kaLalGA~~V~iGr~~l~ 310 (351)
T cd04737 232 PEDADVAINAGADGIWVSNHGGRQLDGGPASFDSLPEIAEAVNHRVPIIFDSGVRRGEHVFKALASGADAVAVGRPVLY 310 (351)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCccCCCCchHHHHHHHHHHHhCCCCeEEEECCCCCHHHHHHHHHcCCCEEEECHHHHH
Confidence 34556666689999999764 22 1223457788888776 6999999999 7899888886 999999998864
|
LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). |
| >PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00017 Score=63.75 Aligned_cols=178 Identities=10% Similarity=0.091 Sum_probs=100.6
Q ss_pred CCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHHHHHHHHcCccceecc
Q psy9039 43 PPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQAAGLDFIRAE 122 (251)
Q Consensus 43 ~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g~~Fir~~ 122 (251)
+.+.+.|+ |-+.|-...+. +. ..+ ....+++++.+.+ .|+-+-.=... .+...-....|++.+-.+
T Consensus 37 ~~~~~~ga-~~lhivDLd~a-~~----g~~----~n~~~i~~i~~~~---~~v~vGGGIrs-~e~~~~~l~~Ga~rvvig 102 (241)
T PRK14114 37 EKLIEEGF-TLIHVVDLSKA-IE----NSV----ENLPVLEKLSEFA---EHIQIGGGIRS-LDYAEKLRKLGYRRQIVS 102 (241)
T ss_pred HHHHHCCC-CEEEEEECCCc-cc----CCc----chHHHHHHHHhhc---CcEEEecCCCC-HHHHHHHHHCCCCEEEEC
Confidence 56778999 99987544322 10 111 1455666776543 14333211112 333444444566554332
Q ss_pred cccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHhhccCC----C-CCCcccHHHHHHHhhhccccEEEecCCCC
Q psy9039 123 SFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSSH----A-ITADVDITETAKAASFFLSDGLIITGNAT 197 (251)
Q Consensus 123 ~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~k~~~~----~-~~~~~~i~~~a~~a~~~~~D~v~VTG~~~ 197 (251)
+.+ ..+...+.+. .+++. .+ +-.+..|.+.. + ..++.+..+.++..+.+|+..+++|--..
T Consensus 103 ----T~a------~~~p~~l~~~-~~~~~-~i--vvslD~k~g~v~~~gw~~~~~~~~~e~~~~~~~~g~~~ii~tdI~r 168 (241)
T PRK14114 103 ----SKV------LEDPSFLKFL-KEIDV-EP--VFSLDTRGGKVAFKGWLAEEEIDPVSLLKRLKEYGLEEIVHTEIEK 168 (241)
T ss_pred ----chh------hCCHHHHHHH-HHhCC-CE--EEEEEccCCEEeeCCCeecCCCCHHHHHHHHHhcCCCEEEEEeech
Confidence 111 1122233333 34543 33 22233332210 0 12345566777777778999999985322
Q ss_pred -C--CCCCHHHHHHHHhcCCCCEEEecCC-ChHhHHHhhc--------CCEEEEeceEeecCee
Q psy9039 198 -G--DPADVSQLMSVKNAVDLPILIGSGV-TSDNVEHYMT--------ADALIIGSHFKQGGRT 249 (251)
Q Consensus 198 -g--~~~~~~~l~~vr~~~~~PV~vG~GI-~~~~v~~~~~--------ADGvIVGS~~~~~g~~ 249 (251)
| ..++.++++++++.+++||+++||+ +.+++.++.. ++|+||||+|- +|++
T Consensus 169 dGt~~G~d~el~~~l~~~~~~pviasGGv~s~~Dl~~l~~~~~~~~g~v~gvivg~Al~-~g~i 231 (241)
T PRK14114 169 DGTLQEHDFSLTRKIAIEAEVKVFAAGGISSENSLKTAQRVHRETNGLLKGVIVGRAFL-EGIL 231 (241)
T ss_pred hhcCCCcCHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHhcccccCCcEEEEEEehHHH-CCCC
Confidence 2 2357899999999899999999999 6788876643 78999999984 4443
|
|
| >TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00021 Score=63.24 Aligned_cols=176 Identities=12% Similarity=-0.013 Sum_probs=103.2
Q ss_pred CCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHHHHHHHHcCccceeccc
Q psy9039 44 PSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQAAGLDFIRAES 123 (251)
Q Consensus 44 ~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g~~Fir~~~ 123 (251)
.+.+.|+ ..+.|--..+.. ..+. ...+++++.+.++ .|+-+-.=... .+...-....|++.+-.+
T Consensus 39 ~~~~~g~-~~lhivDLd~a~-g~~~---------n~~~i~~i~~~~~--~~v~vgGGIrs-~e~~~~~l~~Ga~~vvig- 103 (243)
T TIGR01919 39 WWEQGGA-EWIHLVDLDAAF-GGGN---------NEMMLEEVVKLLV--VVEELSGGRRD-DSSLRAALTGGRARVNGG- 103 (243)
T ss_pred HHHhCCC-eEEEEEECCCCC-CCcc---------hHHHHHHHHHHCC--CCEEEcCCCCC-HHHHHHHHHcCCCEEEEC-
Confidence 3467788 777765444332 2221 4557788887776 57644322222 344443445566655432
Q ss_pred ccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHhhccC--C-----CCCCcccHHHHHHHhhhccccEEEecCCC
Q psy9039 124 FVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSS--H-----AITADVDITETAKAASFFLSDGLIITGNA 196 (251)
Q Consensus 124 ~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~k~~~--~-----~~~~~~~i~~~a~~a~~~~~D~v~VTG~~ 196 (251)
..+ ..+...+.+..++++. .+-+--|+.. .+. . +..+..++.+.++....+|+..+++|--.
T Consensus 104 ---T~a------~~~p~~~~~~~~~~g~-~ivvslD~k~-~g~~~~v~~~Gw~~~~~~~~~~~~~~~~~g~~~ii~tdI~ 172 (243)
T TIGR01919 104 ---TAA------LENPWWAAAVIRYGGD-IVAVGLDVLE-DGEWHTLGNRGWSDGGGDLEVLERLLDSGGCSRVVVTDSK 172 (243)
T ss_pred ---chh------hCCHHHHHHHHHHccc-cEEEEEEEec-CCceEEEECCCeecCCCcHHHHHHHHHhCCCCEEEEEecC
Confidence 111 1133334455555543 2222112220 110 0 11234566677777777899999998753
Q ss_pred CC---CCCCHHHHHHHHhcCCCCEEEecCC-ChHhHHHh--h-c--CCEEEEeceEee
Q psy9039 197 TG---DPADVSQLMSVKNAVDLPILIGSGV-TSDNVEHY--M-T--ADALIIGSHFKQ 245 (251)
Q Consensus 197 ~g---~~~~~~~l~~vr~~~~~PV~vG~GI-~~~~v~~~--~-~--ADGvIVGS~~~~ 245 (251)
.. ..++.++++++++.+++||+++||+ +.+++.++ + . +||+|+|++|-.
T Consensus 173 ~dGt~~G~d~~l~~~l~~~~~~pviasGGv~s~eDl~~l~~l~~~Gv~gvivg~Al~~ 230 (243)
T TIGR01919 173 KDGLSGGPNELLLEVVAARTDAIVAASGGSSLLDDLRAIKYLDEGGVSVAIGGKLLYA 230 (243)
T ss_pred CcccCCCcCHHHHHHHHhhCCCCEEEECCcCCHHHHHHHHhhccCCeeEEEEhHHHHc
Confidence 32 2457899999999999999999999 67898876 2 2 899999999844
|
This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent. |
| >PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00072 Score=58.54 Aligned_cols=165 Identities=17% Similarity=0.240 Sum_probs=87.8
Q ss_pred CCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCCh-HHHHHHHHHcCccceec
Q psy9039 43 PPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCN-KAALATAQAAGLDFIRA 121 (251)
Q Consensus 43 ~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~-~~~~~ia~a~g~~Fir~ 121 (251)
+.+.+.|+ |.+= +=|... ..-.++.+....+.+.++... .++||. .|.. ..-..++...+-++++.
T Consensus 17 ~~~~~~Ga-d~iG------fI~~~~-S~R~V~~~~a~~i~~~~~~~i---~~VgVf--~~~~~~~i~~~~~~~~~d~vQL 83 (210)
T PRK01222 17 EAAAELGA-DAIG------FVFYPK-SPRYVSPEQAAELAAALPPFV---KVVGVF--VNASDEEIDEIVETVPLDLLQL 83 (210)
T ss_pred HHHHHcCC-CEEE------EccCCC-CCCcCCHHHHHHHHHhCCCCC---CEEEEE--eCCCHHHHHHHHHhcCCCEEEE
Confidence 66788999 9984 333211 011222222333333333211 366655 4543 34456666777889986
Q ss_pred ccccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHhhccCCCCCCcccHHHHHHHhhh-ccccEEEe-cC----C
Q psy9039 122 ESFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSSHAITADVDITETAKAASF-FLSDGLII-TG----N 195 (251)
Q Consensus 122 ~~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~~-~~~D~v~V-TG----~ 195 (251)
+ |-. +...+...|+..+..-++.+ ... ....+.. ...+ ..+|.+.+ |+ .
T Consensus 84 H----------g~e--~~~~~~~l~~~~~~~iik~i---~v~-------~~~~l~~---~~~~~~~~d~~L~Ds~~~~~G 138 (210)
T PRK01222 84 H----------GDE--TPEFCRQLKRRYGLPVIKAL---RVR-------SAGDLEA---AAAYYGDADGLLLDAYVGLPG 138 (210)
T ss_pred C----------CCC--CHHHHHHHHhhcCCcEEEEE---ecC-------CHHHHHH---HHhhhccCCEEEEcCCCCCCC
Confidence 4 211 22334445555443223332 111 1111211 1112 24676655 22 1
Q ss_pred CCCCCCCHHHHHHHHhcCCCCEEEecCCChHhHHHhhc---CCEEEEeceEee-cCe
Q psy9039 196 ATGDPADVSQLMSVKNAVDLPILIGSGVTSDNVEHYMT---ADALIIGSHFKQ-GGR 248 (251)
Q Consensus 196 ~~g~~~~~~~l~~vr~~~~~PV~vG~GI~~~~v~~~~~---ADGvIVGS~~~~-~g~ 248 (251)
.+|..-+++.+. ++ .+.|++++|||+|+|+.+++. ..|+=|-|.+.. .|+
T Consensus 139 GtG~~~dw~~l~--~~-~~~p~~LAGGi~peNv~~ai~~~~p~gvDvsSgvE~~~G~ 192 (210)
T PRK01222 139 GTGKTFDWSLLP--AG-LAKPWILAGGLNPDNVAEAIRQVRPYGVDVSSGVESAPGI 192 (210)
T ss_pred CCCCccchHHhh--hc-cCCCEEEECCCCHHHHHHHHHhcCCCEEEecCceECCCCC
Confidence 234444566552 12 267999999999999999884 889999999986 564
|
|
| >PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00026 Score=62.01 Aligned_cols=52 Identities=19% Similarity=0.444 Sum_probs=45.6
Q ss_pred cCCCCCCCCCHHHHHHHHhcCCCCEEEecCC-ChHhHHHhhc--CCEEEEeceEe
Q psy9039 193 TGNATGDPADVSQLMSVKNAVDLPILIGSGV-TSDNVEHYMT--ADALIIGSHFK 244 (251)
Q Consensus 193 TG~~~g~~~~~~~l~~vr~~~~~PV~vG~GI-~~~~v~~~~~--ADGvIVGS~~~ 244 (251)
.|+..|.+.+.+.++++.+.+++||.+|||| |.+++.+++. +|++|+||+..
T Consensus 52 dga~~g~~~n~~~i~~i~~~~~~pv~~gGGIrs~edv~~l~~~G~~~vivGtaa~ 106 (228)
T PRK04128 52 DGAFEGKPKNLDVVKNIIRETGLKVQVGGGLRTYESIKDAYEIGVENVIIGTKAF 106 (228)
T ss_pred cchhcCCcchHHHHHHHHhhCCCCEEEcCCCCCHHHHHHHHHCCCCEEEECchhc
Confidence 5666666678899999998899999999999 6899999996 99999999876
|
|
| >cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00048 Score=63.47 Aligned_cols=70 Identities=24% Similarity=0.389 Sum_probs=49.9
Q ss_pred HHHHHHhhhccccEEEecCCC-----C----C-CCCCHHHHHHHHhcC---CCCEEEecCC-ChHhHHHhhc--CCEEEE
Q psy9039 176 TETAKAASFFLSDGLIITGNA-----T----G-DPADVSQLMSVKNAV---DLPILIGSGV-TSDNVEHYMT--ADALII 239 (251)
Q Consensus 176 ~~~a~~a~~~~~D~v~VTG~~-----~----g-~~~~~~~l~~vr~~~---~~PV~vG~GI-~~~~v~~~~~--ADGvIV 239 (251)
.+.++.+...|+|++.|.+.. + + ..+.+..+..+++.. ++||++.||| ++.++.+++. ||+|.+
T Consensus 146 ~~~A~~l~~aGaD~I~vg~g~G~~~~t~~~~g~g~p~~~~i~~v~~~~~~~~vpVIA~GGI~~~~di~kAla~GA~~Vmi 225 (325)
T cd00381 146 AEAARDLIDAGADGVKVGIGPGSICTTRIVTGVGVPQATAVADVAAAARDYGVPVIADGGIRTSGDIVKALAAGADAVML 225 (325)
T ss_pred HHHHHHHHhcCCCEEEECCCCCcCcccceeCCCCCCHHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHcCCCEEEe
Confidence 445666666799999884211 1 1 123455566555543 6999999999 6899998886 999999
Q ss_pred eceEee
Q psy9039 240 GSHFKQ 245 (251)
Q Consensus 240 GS~~~~ 245 (251)
||.|..
T Consensus 226 Gt~fa~ 231 (325)
T cd00381 226 GSLLAG 231 (325)
T ss_pred cchhcc
Confidence 998854
|
IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents. |
| >PLN02274 inosine-5'-monophosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00022 Score=69.39 Aligned_cols=73 Identities=22% Similarity=0.335 Sum_probs=53.6
Q ss_pred ccHHHHHHHhhhccccEEEec---C----CC--C--CCC--CCHHHHHHHHhcCCCCEEEecCC-ChHhHHHhhc--CCE
Q psy9039 173 VDITETAKAASFFLSDGLIIT---G----NA--T--GDP--ADVSQLMSVKNAVDLPILIGSGV-TSDNVEHYMT--ADA 236 (251)
Q Consensus 173 ~~i~~~a~~a~~~~~D~v~VT---G----~~--~--g~~--~~~~~l~~vr~~~~~PV~vG~GI-~~~~v~~~~~--ADG 236 (251)
....+.++.+...|+|++.|+ | .+ + |.+ +....+.++.+..++||++-||| ++.++.+++. ||+
T Consensus 297 v~t~e~a~~a~~aGaD~i~vg~g~G~~~~t~~~~~~g~~~~~~i~~~~~~~~~~~vpVIadGGI~~~~di~kAla~GA~~ 376 (505)
T PLN02274 297 VVTMYQAQNLIQAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVASIAAQHGVPVIADGGISNSGHIVKALTLGAST 376 (505)
T ss_pred CCCHHHHHHHHHcCcCEEEECCCCCccccCccccccCCCcccHHHHHHHHHHhcCCeEEEeCCCCCHHHHHHHHHcCCCE
Confidence 344556677777899999884 2 11 1 111 23456777777778999999999 7999998886 999
Q ss_pred EEEeceEee
Q psy9039 237 LIIGSHFKQ 245 (251)
Q Consensus 237 vIVGS~~~~ 245 (251)
|.+||+|..
T Consensus 377 V~vGs~~~~ 385 (505)
T PLN02274 377 VMMGSFLAG 385 (505)
T ss_pred EEEchhhcc
Confidence 999999853
|
|
| >PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.0011 Score=67.52 Aligned_cols=158 Identities=15% Similarity=0.183 Sum_probs=96.3
Q ss_pred hHHHHHHHHHhhCCCCcCCCCccEEEEeecCC-------CCccccCCCch--H---HHHHHHHHHHHHHHhCCCCccEEE
Q psy9039 30 NMTRLCAEIRKVLPPSVPVGVQHGVIVENMHD-------VPYVLEAESGP--E---ITANMTRLCAEIRKVLPPSVPVGV 97 (251)
Q Consensus 30 ~~~~i~~~a~~~a~~l~~~Gv~D~i~ieN~~~-------~Pf~~p~~~gp--~---i~aa~~~~i~~vr~~~~~~~P~Gv 97 (251)
.++.+++.-.+.|+...++|+ |+|+|---.| -|.+....|.+ . -..-..++++.+|+..++..|+++
T Consensus 545 eI~~~i~~f~~aA~~a~~aGf-Dgveih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~~~~~~~v~~ 623 (765)
T PRK08255 545 DMDRVRDDFVAAARRAAEAGF-DWLELHCAHGYLLSSFISPLTNQRTDEYGGSLENRLRYPLEVFRAVRAVWPAEKPMSV 623 (765)
T ss_pred HHHHHHHHHHHHHHHHHHcCC-CEEEEecccchHHHHhcCCCCCCCCCCCCCCHHHHhHHHHHHHHHHHHhcCCCCeeEE
Confidence 467788888888888899999 9999831111 46553322221 1 122233577778877653345554
Q ss_pred EEeeCChHHHHHHHHHcCccceecccccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHhhccCCCCCCcccHHH
Q psy9039 98 QILSGCNKAALATAQAAGLDFIRAESFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSSHAITADVDITE 177 (251)
Q Consensus 98 n~~~N~~~~~~~ia~a~g~~Fir~~~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~k~~~~~~~~~~~i~~ 177 (251)
=+ +. .+|..- | + + . +...+
T Consensus 624 ri--~~------------~~~~~~-----------g-~--~--------------------------------~-~~~~~ 642 (765)
T PRK08255 624 RI--SA------------HDWVEG-----------G-N--T--------------------------------P-DDAVE 642 (765)
T ss_pred EE--cc------------ccccCC-----------C-C--C--------------------------------H-HHHHH
Confidence 43 21 122110 0 0 0 0 11123
Q ss_pred HHHHhhhccccEEEecCCCCCCC--------CCHHHHHHHHhcCCCCEEEecCC-ChHhHHHhhc---CCEEEEeceEee
Q psy9039 178 TAKAASFFLSDGLIITGNATGDP--------ADVSQLMSVKNAVDLPILIGSGV-TSDNVEHYMT---ADALIIGSHFKQ 245 (251)
Q Consensus 178 ~a~~a~~~~~D~v~VTG~~~g~~--------~~~~~l~~vr~~~~~PV~vG~GI-~~~~v~~~~~---ADGvIVGS~~~~ 245 (251)
+++..+..|+|.+-||+..+... ......+++|+.+++||++.|+| +++++.++++ ||.|.+|-.|+.
T Consensus 643 ~~~~l~~~g~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~ik~~~~~pv~~~G~i~~~~~a~~~l~~g~~D~v~~gR~~l~ 722 (765)
T PRK08255 643 IARAFKAAGADLIDVSSGQVSKDEKPVYGRMYQTPFADRIRNEAGIATIAVGAISEADHVNSIIAAGRADLCALARPHLA 722 (765)
T ss_pred HHHHHHhcCCcEEEeCCCCCCcCCCCCcCccccHHHHHHHHHHcCCEEEEeCCCCCHHHHHHHHHcCCcceeeEcHHHHh
Confidence 33443445788888875332211 12345678899999999999999 6899999994 999999999988
Q ss_pred cCee
Q psy9039 246 GGRT 249 (251)
Q Consensus 246 ~g~~ 249 (251)
|-.|
T Consensus 723 dP~~ 726 (765)
T PRK08255 723 DPAW 726 (765)
T ss_pred CccH
Confidence 7544
|
|
| >TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.0004 Score=60.51 Aligned_cols=72 Identities=15% Similarity=0.278 Sum_probs=55.1
Q ss_pred HHHHHHHhhhccccEEEecC---CCCCCCCCHHHHHHHHhcCCCCEEEecCC-ChHhHHHhhc--CCEEEEeceEeec
Q psy9039 175 ITETAKAASFFLSDGLIITG---NATGDPADVSQLMSVKNAVDLPILIGSGV-TSDNVEHYMT--ADALIIGSHFKQG 246 (251)
Q Consensus 175 i~~~a~~a~~~~~D~v~VTG---~~~g~~~~~~~l~~vr~~~~~PV~vG~GI-~~~~v~~~~~--ADGvIVGS~~~~~ 246 (251)
..+.++.-..+|++.+.+|- ..++...+.+.++++++.+++||++|||| +.+++.+++. +|++++||++.++
T Consensus 32 p~~~a~~~~~~g~~~i~i~dl~~~~~~~~~n~~~~~~i~~~~~~pv~~~ggi~~~~d~~~~~~~G~~~vilg~~~l~~ 109 (232)
T TIGR03572 32 PVNAARIYNAKGADELIVLDIDASKRGREPLFELISNLAEECFMPLTVGGGIRSLEDAKKLLSLGADKVSINTAALEN 109 (232)
T ss_pred HHHHHHHHHHcCCCEEEEEeCCCcccCCCCCHHHHHHHHHhCCCCEEEECCCCCHHHHHHHHHcCCCEEEEChhHhcC
Confidence 34444444446888777755 33344567788999999999999999999 6899998875 9999999998765
|
This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr |
| >COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.00056 Score=62.55 Aligned_cols=77 Identities=27% Similarity=0.406 Sum_probs=59.1
Q ss_pred cccHHHHHHHhhhccccEEEecCCCC-CC------------------------CCCHHHHHHHHhcCC--CCEEEecCC-
Q psy9039 172 DVDITETAKAASFFLSDGLIITGNAT-GD------------------------PADVSQLMSVKNAVD--LPILIGSGV- 223 (251)
Q Consensus 172 ~~~i~~~a~~a~~~~~D~v~VTG~~~-g~------------------------~~~~~~l~~vr~~~~--~PV~vG~GI- 223 (251)
...+.++|+.+..+|+|+++.|.+.. +. +..++.++++++.++ +||+-=|||
T Consensus 172 ~~di~~iA~~~~~~g~Dgl~~~NT~~~~~~id~~~~~~~~~~~~GGLSG~~ikp~al~~v~~l~~~~~~~ipIIGvGGI~ 251 (310)
T COG0167 172 ITDIDEIAKAAEEAGADGLIAINTTKSGMKIDLETKKPVLANETGGLSGPPLKPIALRVVAELYKRLGGDIPIIGVGGIE 251 (310)
T ss_pred HHHHHHHHHHHHHcCCcEEEEEeeccccccccccccccccCcCCCCcCcccchHHHHHHHHHHHHhcCCCCcEEEecCcC
Confidence 35677888888889999998866322 11 012466888888865 999999999
Q ss_pred ChHhHHHhh-c-CCEEEEeceEeecCe
Q psy9039 224 TSDNVEHYM-T-ADALIIGSHFKQGGR 248 (251)
Q Consensus 224 ~~~~v~~~~-~-ADGvIVGS~~~~~g~ 248 (251)
|.+++.+.+ . |+.++|||++..+|-
T Consensus 252 s~~DA~E~i~aGA~~vQv~Tal~~~Gp 278 (310)
T COG0167 252 TGEDALEFILAGASAVQVGTALIYKGP 278 (310)
T ss_pred cHHHHHHHHHcCCchheeeeeeeeeCc
Confidence 788877777 4 999999999999874
|
|
| >TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0004 Score=60.34 Aligned_cols=71 Identities=21% Similarity=0.431 Sum_probs=53.9
Q ss_pred HHHHHHhhhccccEEEe---cCCCCCCCCCHHHHHHHHhcCCCCEEEecCC-ChHhHHHhhc--CCEEEEeceEeec
Q psy9039 176 TETAKAASFFLSDGLII---TGNATGDPADVSQLMSVKNAVDLPILIGSGV-TSDNVEHYMT--ADALIIGSHFKQG 246 (251)
Q Consensus 176 ~~~a~~a~~~~~D~v~V---TG~~~g~~~~~~~l~~vr~~~~~PV~vG~GI-~~~~v~~~~~--ADGvIVGS~~~~~ 246 (251)
.++++.-..+|++.+.+ .+...+...+.+.++++++.+++|+.+|+|| +.+++.+++. ||.+++||...++
T Consensus 31 ~~~a~~~~~~g~~~l~v~dl~~~~~g~~~~~~~i~~i~~~~~~pi~~ggGI~~~ed~~~~~~~Ga~~vvlgs~~l~d 107 (230)
T TIGR00007 31 VEAAKKWEEEGAERIHVVDLDGAKEGGPVNLPVIKKIVRETGVPVQVGGGIRSLEDVEKLLDLGVDRVIIGTAAVEN 107 (230)
T ss_pred HHHHHHHHHcCCCEEEEEeCCccccCCCCcHHHHHHHHHhcCCCEEEeCCcCCHHHHHHHHHcCCCEEEEChHHhhC
Confidence 34444433457777755 3444455557789999999999999999999 6899999996 9999999987665
|
Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317). |
| >cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4 | Back alignment and domain information |
|---|
Probab=97.45 E-value=5.5e-05 Score=70.36 Aligned_cols=72 Identities=18% Similarity=0.125 Sum_probs=52.4
Q ss_pred HHHHHhhhccccEEEecCCCC-CC----CC-CHHHHHHHHhcC--CCCEEEecCC-ChHhHHHhhc--CCEEEEeceEee
Q psy9039 177 ETAKAASFFLSDGLIITGNAT-GD----PA-DVSQLMSVKNAV--DLPILIGSGV-TSDNVEHYMT--ADALIIGSHFKQ 245 (251)
Q Consensus 177 ~~a~~a~~~~~D~v~VTG~~~-g~----~~-~~~~l~~vr~~~--~~PV~vG~GI-~~~~v~~~~~--ADGvIVGS~~~~ 245 (251)
++++..+..|+|.+.||+... .. .. ....++.+|+.+ ++||++.||| +++++.++++ ||+|-+|..|+.
T Consensus 239 ~i~~~L~~~GvD~I~Vs~g~~~~~~~~~~~~~~~~~~~ik~~~~~~iPVi~~Ggi~t~e~ae~~l~~gaD~V~~gR~lia 318 (353)
T cd04735 239 ALVDKLADKGLDYLHISLWDFDRKSRRGRDDNQTIMELVKERIAGRLPLIAVGSINTPDDALEALETGADLVAIGRGLLV 318 (353)
T ss_pred HHHHHHHHcCCCEEEeccCccccccccCCcchHHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHcCCChHHHhHHHHh
Confidence 444444556899999987421 11 11 235566777766 7999999999 7999999996 999999999877
Q ss_pred cCe
Q psy9039 246 GGR 248 (251)
Q Consensus 246 ~g~ 248 (251)
|-.
T Consensus 319 dPd 321 (353)
T cd04735 319 DPD 321 (353)
T ss_pred Ccc
Confidence 644
|
Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. |
| >cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0015 Score=60.75 Aligned_cols=70 Identities=24% Similarity=0.459 Sum_probs=51.6
Q ss_pred HHHHHHHhhhccccEEEecCCCCCC-----CCCHHHHHHHHhc---C--CCCEEEecCC-ChHhHHHhhc--CCEEEEec
Q psy9039 175 ITETAKAASFFLSDGLIITGNATGD-----PADVSQLMSVKNA---V--DLPILIGSGV-TSDNVEHYMT--ADALIIGS 241 (251)
Q Consensus 175 i~~~a~~a~~~~~D~v~VTG~~~g~-----~~~~~~l~~vr~~---~--~~PV~vG~GI-~~~~v~~~~~--ADGvIVGS 241 (251)
..+.++.+...|+|+++|+|.. |. .+..+.|.++++. . ++||++.||| +..++.+++. ||+|.+|+
T Consensus 223 ~~~dA~~a~~~G~d~I~vsnhg-G~~~d~~~~~~~~L~~i~~~~~~~~~~~~vi~~GGIr~G~Dv~kalaLGA~aV~iG~ 301 (344)
T cd02922 223 TVEDAVLAAEYGVDGIVLSNHG-GRQLDTAPAPIEVLLEIRKHCPEVFDKIEVYVDGGVRRGTDVLKALCLGAKAVGLGR 301 (344)
T ss_pred CHHHHHHHHHcCCCEEEEECCC-cccCCCCCCHHHHHHHHHHHHHHhCCCceEEEeCCCCCHHHHHHHHHcCCCEEEECH
Confidence 3555666667899999999853 22 2234455555552 2 5999999999 7899888886 99999999
Q ss_pred eEee
Q psy9039 242 HFKQ 245 (251)
Q Consensus 242 ~~~~ 245 (251)
.|..
T Consensus 302 ~~l~ 305 (344)
T cd02922 302 PFLY 305 (344)
T ss_pred HHHH
Confidence 8865
|
FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit. |
| >COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0016 Score=56.89 Aligned_cols=201 Identities=18% Similarity=0.244 Sum_probs=128.3
Q ss_pred ceEEEeeeecccccccCCCCCCCcchHHHHHHHHHhhCCCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHH
Q psy9039 5 HGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAE 84 (251)
Q Consensus 5 ~~~~~~~~~~~p~~~~~pG~P~~~~~~~~i~~~a~~~a~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~ 84 (251)
|+..|-.+.+.-.-.. ||| .+.. +.+.+.|+ |=+.+ +|+-=|. .| ..-|..++++
T Consensus 14 ~GrVVKGv~F~~lrd~--GDp-----VelA--------~~Y~e~GA-DElvF---lDItAs~---~g---r~~~~~vv~r 68 (256)
T COG0107 14 DGRVVKGVNFKNLRDA--GDP-----VELA--------KRYNEEGA-DELVF---LDITASS---EG---RETMLDVVER 68 (256)
T ss_pred CCEEEecccccchhhc--CCh-----HHHH--------HHHHHcCC-CeEEE---Eeccccc---cc---chhHHHHHHH
Confidence 6677777766555445 766 2333 55788999 98874 6664443 34 3348888899
Q ss_pred HHHhCCCCccEEEEEeeCChHHHHHHHHHcCccceecccccccccCCCceeecCcchhHHHHHhcCCCcchhhh-hhHh-
Q psy9039 85 IRKVLPPSVPVGVQILSGCNKAALATAQAAGLDFIRAESFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFT-DIKK- 162 (251)
Q Consensus 85 vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g~~Fir~~~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a-~v~~- 162 (251)
+.+... +|+-+-.=..+ ++.+.--...|++=+.+|. . . ..++.-+.+..++.|.- .-+++ |...
T Consensus 69 ~A~~vf--iPltVGGGI~s-~eD~~~ll~aGADKVSINs---a-----A--v~~p~lI~~~a~~FGsQ-ciVvaIDakr~ 134 (256)
T COG0107 69 VAEQVF--IPLTVGGGIRS-VEDARKLLRAGADKVSINS---A-----A--VKDPELITEAADRFGSQ-CIVVAIDAKRV 134 (256)
T ss_pred HHhhce--eeeEecCCcCC-HHHHHHHHHcCCCeeeeCh---h-----H--hcChHHHHHHHHHhCCc-eEEEEEEeeec
Confidence 988888 89888765555 5555555667777777652 1 1 11333455666666651 11111 1111
Q ss_pred -----------hc-cCCCCCCcccHHHHHHHhhhccccEEEecCCCCCC-C--CCHHHHHHHHhcCCCCEEEecCC-ChH
Q psy9039 163 -----------KH-SSHAITADVDITETAKAASFFLSDGLIITGNATGD-P--ADVSQLMSVKNAVDLPILIGSGV-TSD 226 (251)
Q Consensus 163 -----------k~-~~~~~~~~~~i~~~a~~a~~~~~D~v~VTG~~~g~-~--~~~~~l~~vr~~~~~PV~vG~GI-~~~ 226 (251)
.| |.. ......-+-++..+..|+-=+.+|...... . -++++++.+++.+++|||+.||. +++
T Consensus 135 ~~g~~~~~~v~~~gGr~--~t~~d~~~Wa~~~e~~GAGEIlLtsmD~DGtk~GyDl~l~~~v~~~v~iPvIASGGaG~~e 212 (256)
T COG0107 135 PDGENGWYEVFTHGGRE--DTGLDAVEWAKEVEELGAGEILLTSMDRDGTKAGYDLELTRAVREAVNIPVIASGGAGKPE 212 (256)
T ss_pred cCCCCCcEEEEecCCCc--CCCcCHHHHHHHHHHcCCceEEEeeecccccccCcCHHHHHHHHHhCCCCEEecCCCCcHH
Confidence 11 111 122344555666666788888887653322 2 26899999999999999999999 899
Q ss_pred hHHHhhc---CCEEEEeceEeec
Q psy9039 227 NVEHYMT---ADALIIGSHFKQG 246 (251)
Q Consensus 227 ~v~~~~~---ADGvIVGS~~~~~ 246 (251)
++.+.+. ||++...|-|..+
T Consensus 213 hf~eaf~~~~adAaLAAsiFH~~ 235 (256)
T COG0107 213 HFVEAFTEGKADAALAASIFHFG 235 (256)
T ss_pred HHHHHHHhcCccHHHhhhhhhcC
Confidence 9999884 9999998888654
|
|
| >PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.00045 Score=63.17 Aligned_cols=74 Identities=19% Similarity=0.355 Sum_probs=53.3
Q ss_pred ccHHHHHHHhhhccccEEEecCCCCC----CCCCHHHHHHHHhcCCCCEEEecCC-ChHhHHHhhc---CCEEEEeceEe
Q psy9039 173 VDITETAKAASFFLSDGLIITGNATG----DPADVSQLMSVKNAVDLPILIGSGV-TSDNVEHYMT---ADALIIGSHFK 244 (251)
Q Consensus 173 ~~i~~~a~~a~~~~~D~v~VTG~~~g----~~~~~~~l~~vr~~~~~PV~vG~GI-~~~~v~~~~~---ADGvIVGS~~~ 244 (251)
+...+.++....+|+|.+.|=|.... .+.+++.++++++.+++||++.||| |.+++.+.++ +|||.+|....
T Consensus 138 ~~~~~~~~~l~~~G~~~i~vH~Rt~~q~~~~~a~w~~i~~i~~~~~ipvi~NGdI~s~~d~~~~~~~tg~dgvMigRgal 217 (309)
T PF01207_consen 138 EETIEFARILEDAGVSAITVHGRTRKQRYKGPADWEAIAEIKEALPIPVIANGDIFSPEDAERMLEQTGADGVMIGRGAL 217 (309)
T ss_dssp HHHHHHHHHHHHTT--EEEEECS-TTCCCTS---HHHHHHCHHC-TSEEEEESS--SHHHHHHHCCCH-SSEEEESHHHC
T ss_pred hHHHHHHHHhhhcccceEEEecCchhhcCCcccchHHHHHHhhcccceeEEcCccCCHHHHHHHHHhcCCcEEEEchhhh
Confidence 44566667666789999999774221 2457899999999999999999999 7999999985 99999998766
Q ss_pred ec
Q psy9039 245 QG 246 (251)
Q Consensus 245 ~~ 246 (251)
.+
T Consensus 218 ~n 219 (309)
T PF01207_consen 218 GN 219 (309)
T ss_dssp C-
T ss_pred hc
Confidence 54
|
Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y. |
| >PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5 | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.00032 Score=60.41 Aligned_cols=167 Identities=18% Similarity=0.327 Sum_probs=98.6
Q ss_pred CCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHHHHHHHHcCccceecc
Q psy9039 43 PPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQAAGLDFIRAE 122 (251)
Q Consensus 43 ~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g~~Fir~~ 122 (251)
+.|.+.|+ |.+-+-=+- --|.....-||.+ ++++|+.++ .|+=+-++...|...+..-...|++.+-..
T Consensus 19 ~~l~~~g~-d~lHiDiMD-g~fvpn~~~g~~~-------i~~i~~~~~--~~~DvHLMv~~P~~~i~~~~~~g~~~i~~H 87 (201)
T PF00834_consen 19 KRLEEAGA-DWLHIDIMD-GHFVPNLTFGPDI-------IKAIRKITD--LPLDVHLMVENPERYIEEFAEAGADYITFH 87 (201)
T ss_dssp HHHHHTT--SEEEEEEEB-SSSSSSB-B-HHH-------HHHHHTTSS--SEEEEEEESSSGGGHHHHHHHHT-SEEEEE
T ss_pred HHHHHcCC-CEEEEeecc-cccCCcccCCHHH-------HHHHhhcCC--CcEEEEeeeccHHHHHHHHHhcCCCEEEEc
Confidence 67788999 998764333 3365555556554 566777776 799999888876544444444566665543
Q ss_pred cccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHhhccCCCCCCcccHHHHHHHhhh-ccccEEEecCCCCCCCC
Q psy9039 123 SFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSSHAITADVDITETAKAASF-FLSDGLIITGNATGDPA 201 (251)
Q Consensus 123 ~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~~-~~~D~v~VTG~~~g~~~ 201 (251)
.. -..+..+.+++-++.|. .+-+. +++. | +++.+ ... ..+|.+-+-....|...
T Consensus 88 ~E----------~~~~~~~~i~~ik~~g~-k~Gia--lnP~------T---~~~~~---~~~l~~vD~VlvMsV~PG~~G 142 (201)
T PF00834_consen 88 AE----------ATEDPKETIKYIKEAGI-KAGIA--LNPE------T---PVEEL---EPYLDQVDMVLVMSVEPGFGG 142 (201)
T ss_dssp GG----------GTTTHHHHHHHHHHTTS-EEEEE--E-TT------S----GGGG---TTTGCCSSEEEEESS-TTTSS
T ss_pred cc----------chhCHHHHHHHHHHhCC-CEEEE--EECC------C---CchHH---HHHhhhcCEEEEEEecCCCCc
Confidence 11 11245567777777765 21111 1211 1 22221 112 36899877665555432
Q ss_pred ------CHHHHHHHHhcC-----CCCEEEecCCChHhHHHhhc--CCEEEEeceEee
Q psy9039 202 ------DVSQLMSVKNAV-----DLPILIGSGVTSDNVEHYMT--ADALIIGSHFKQ 245 (251)
Q Consensus 202 ------~~~~l~~vr~~~-----~~PV~vG~GI~~~~v~~~~~--ADGvIVGS~~~~ 245 (251)
..++++++|+.. ++.+.+=||||.+|+.++.+ ||.+++||++-+
T Consensus 143 q~f~~~~~~KI~~l~~~~~~~~~~~~I~vDGGI~~~~~~~~~~aGad~~V~Gs~iF~ 199 (201)
T PF00834_consen 143 QKFIPEVLEKIRELRKLIPENGLDFEIEVDGGINEENIKQLVEAGADIFVAGSAIFK 199 (201)
T ss_dssp B--HGGHHHHHHHHHHHHHHHTCGSEEEEESSESTTTHHHHHHHT--EEEESHHHHT
T ss_pred ccccHHHHHHHHHHHHHHHhcCCceEEEEECCCCHHHHHHHHHcCCCEEEECHHHhC
Confidence 246666666543 48999999999999999995 999999998754
|
1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D .... |
| >PLN02617 imidazole glycerol phosphate synthase hisHF | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.0026 Score=62.40 Aligned_cols=191 Identities=17% Similarity=0.144 Sum_probs=115.8
Q ss_pred CCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCCh----------HHHHHHHH
Q psy9039 43 PPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCN----------KAALATAQ 112 (251)
Q Consensus 43 ~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~----------~~~~~ia~ 112 (251)
+.+.+.|+ |-|.+-|.-+. . .++.-...|..+++++.+... +|+-+=.=..+- .+...-..
T Consensus 274 ~~y~~~Ga-del~~~Di~~~---~---~~~~~~~~~~~~i~~i~~~~~--ip~~vGGGIr~~~d~~~~~~~~~e~~~~~l 344 (538)
T PLN02617 274 GQYYKDGA-DEVAFLNITGF---R---DFPLGDLPMLEVLRRASENVF--VPLTVGGGIRDFTDANGRYYSSLEVASEYF 344 (538)
T ss_pred HHHHHcCC-CEEEEEECCCC---c---CCcccchhHHHHHHHHHhhCC--CCEEEcCCccccccccccccchHHHHHHHH
Confidence 55788999 99987555432 1 233344457788888888877 787665333220 13344445
Q ss_pred HcCccceeccccccccc---CCCceeecCcchhHHHHHhcCCCcchhhhhhHhhc-------------------------
Q psy9039 113 AAGLDFIRAESFVFGHM---ADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKH------------------------- 164 (251)
Q Consensus 113 a~g~~Fir~~~~~~~~~---~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~k~------------------------- 164 (251)
..|++-+-++...-... -..| -..+..-+.+..+++|...|-+ .+..|.
T Consensus 345 ~~GadkV~i~s~Av~~~~~~~~~~-~~~~p~~i~~~~~~fg~q~ivv--siD~k~~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (538)
T PLN02617 345 RSGADKISIGSDAVYAAEEYIASG-VKTGKTSIEQISRVYGNQAVVV--SIDPRRVYVKDPSDVPFKTVKVTNPGPNGEE 421 (538)
T ss_pred HcCCCEEEEChHHHhChhhhhccc-cccCHHHHHHHHHHcCCceEEE--EEecCcCcccCccccccccccccccCcCccc
Confidence 56777666542110000 0001 0112334455666666421211 122111
Q ss_pred ---------cCCCCCCcccHHHHHHHhhhccccEEEecCCCCC---CCCCHHHHHHHHhcCCCCEEEecCC-ChHhHHHh
Q psy9039 165 ---------SSHAITADVDITETAKAASFFLSDGLIITGNATG---DPADVSQLMSVKNAVDLPILIGSGV-TSDNVEHY 231 (251)
Q Consensus 165 ---------~~~~~~~~~~i~~~a~~a~~~~~D~v~VTG~~~g---~~~~~~~l~~vr~~~~~PV~vG~GI-~~~~v~~~ 231 (251)
|-. ..++....+.++..+..|+.-+++|-.... ...++++++++++.+++||++.||+ +++++.++
T Consensus 422 ~~~~~v~~~gg~-~~~~~~~~~~~~~~~~~Gageil~t~id~DGt~~G~d~~l~~~v~~~~~ipviasGG~g~~~d~~~~ 500 (538)
T PLN02617 422 YAWYQCTVKGGR-EGRPIGAYELAKAVEELGAGEILLNCIDCDGQGKGFDIELVKLVSDAVTIPVIASSGAGTPEHFSDV 500 (538)
T ss_pred ceEEEEEEecCc-ccCCCCHHHHHHHHHhcCCCEEEEeeccccccccCcCHHHHHHHHhhCCCCEEEECCCCCHHHHHHH
Confidence 000 012455667777777789999999876432 2347899999999999999999999 79999999
Q ss_pred hc---CCEEEEeceEeec
Q psy9039 232 MT---ADALIIGSHFKQG 246 (251)
Q Consensus 232 ~~---ADGvIVGS~~~~~ 246 (251)
+. ||++..+|-|...
T Consensus 501 ~~~~~~~a~~aa~~fh~~ 518 (538)
T PLN02617 501 FSKTNASAALAAGIFHRK 518 (538)
T ss_pred HhcCCccEEEEEeeeccC
Confidence 94 8999999998654
|
|
| >PLN02460 indole-3-glycerol-phosphate synthase | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0021 Score=59.43 Aligned_cols=165 Identities=15% Similarity=0.116 Sum_probs=107.1
Q ss_pred CCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHh-CCCCccEEEEEeeCChHHHHHHHHHcCccceec
Q psy9039 43 PPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKV-LPPSVPVGVQILSGCNKAALATAQAAGLDFIRA 121 (251)
Q Consensus 43 ~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~-~~~~~P~Gvn~~~N~~~~~~~ia~a~g~~Fir~ 121 (251)
+.++++|+ ++|=|-.+- .|-.. ...-++++|+. ++ +|+---=|.-+ .+++..|.+.|++-+=.
T Consensus 146 ~~Ye~~GA-~aISVLTd~--~~F~G----------s~e~L~~vr~~~v~--lPvLrKDFIID-~yQI~eAr~~GADAVLL 209 (338)
T PLN02460 146 QAYEKGGA-ACLSVLTDE--KYFQG----------SFENLEAIRNAGVK--CPLLCKEFIVD-AWQIYYARSKGADAILL 209 (338)
T ss_pred HHHHhCCC-cEEEEecCc--CcCCC----------CHHHHHHHHHcCCC--CCEeeccccCC-HHHHHHHHHcCCCcHHH
Confidence 66888899 888774433 33332 23456788887 77 78766555545 67888888889887654
Q ss_pred ccccccccCCCceeec-CcchhHHHHHhcCCCcchhhhhhHhhccCCCCCCcccHHHHHHHhhhc-cccEEEecCCCCC-
Q psy9039 122 ESFVFGHMADEGLMNA-QAGPLLRYRKQIGADNVLVFTDIKKKHSSHAITADVDITETAKAASFF-LSDGLIITGNATG- 198 (251)
Q Consensus 122 ~~~~~~~~~~~Gli~~-da~e~~~~r~~l~~~~i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~~~-~~D~v~VTG~~~g- 198 (251)
- -+++.+ +..++.++.+.+|.+-+-.+ | .++..+.+... |++.++|-...-.
T Consensus 210 I---------aaiL~~~~L~~l~~~A~~LGme~LVEV---------H-------~~~ElerAl~~~ga~iIGINNRdL~T 264 (338)
T PLN02460 210 I---------AAVLPDLDIKYMLKICKSLGMAALIEV---------H-------DEREMDRVLGIEGVELIGINNRSLET 264 (338)
T ss_pred H---------HHhCCHHHHHHHHHHHHHcCCeEEEEe---------C-------CHHHHHHHHhcCCCCEEEEeCCCCCc
Confidence 1 122222 47788888999987322111 2 23344555544 8999999875332
Q ss_pred CCCCHHHHHHHHh-----c---CCCCEEEecCC-ChHhHHHhhc--CCEEEEeceEeecCe
Q psy9039 199 DPADVSQLMSVKN-----A---VDLPILIGSGV-TSDNVEHYMT--ADALIIGSHFKQGGR 248 (251)
Q Consensus 199 ~~~~~~~l~~vr~-----~---~~~PV~vG~GI-~~~~v~~~~~--ADGvIVGS~~~~~g~ 248 (251)
...+++.-.++.. . .++-++.-+|| |++++..+.. +||+-||++|++..+
T Consensus 265 f~vDl~~t~~L~~~~~~~~i~~~~~~~VsESGI~t~~Dv~~l~~~GadAvLVGEsLMr~~d 325 (338)
T PLN02460 265 FEVDISNTKKLLEGERGEQIREKGIIVVGESGLFTPDDVAYVQNAGVKAVLVGESLVKQDD 325 (338)
T ss_pred ceECHHHHHHHhhhccccccCCCCeEEEECCCCCCHHHHHHHHHCCCCEEEECHHHhCCCC
Confidence 2345555444444 1 13446677999 7999999986 999999999998654
|
|
| >TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2 | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.00032 Score=64.77 Aligned_cols=69 Identities=26% Similarity=0.372 Sum_probs=52.2
Q ss_pred HHHHHHhhhccccEEEecCCCCCCC-----------------------CCHHHHHHHHh-cCCCCEEEecCC-ChHhHHH
Q psy9039 176 TETAKAASFFLSDGLIITGNATGDP-----------------------ADVSQLMSVKN-AVDLPILIGSGV-TSDNVEH 230 (251)
Q Consensus 176 ~~~a~~a~~~~~D~v~VTG~~~g~~-----------------------~~~~~l~~vr~-~~~~PV~vG~GI-~~~~v~~ 230 (251)
.+.++.....|+|++.|+|.. |.. +..+.+.++++ ..++||++.||| +++++.+
T Consensus 193 ~~~a~~L~~aGvd~I~Vsg~g-Gt~~~~ie~~r~~~~~~~~~~~~~g~~t~~~l~~~~~~~~~ipVIasGGI~~~~di~k 271 (333)
T TIGR02151 193 KEVAKLLADAGVSAIDVAGAG-GTSWAQVENYRAKGSNLASFFNDWGIPTAASLLEVRSDAPDAPIIASGGLRTGLDVAK 271 (333)
T ss_pred HHHHHHHHHcCCCEEEECCCC-CCcccchhhhcccccccchhhhcccHhHHHHHHHHHhcCCCCeEEEECCCCCHHHHHH
Confidence 455666666799999999842 210 11245666776 568999999999 7999998
Q ss_pred hhc--CCEEEEeceEee
Q psy9039 231 YMT--ADALIIGSHFKQ 245 (251)
Q Consensus 231 ~~~--ADGvIVGS~~~~ 245 (251)
++. ||+|-+|+.|.+
T Consensus 272 aLalGAd~V~igr~~L~ 288 (333)
T TIGR02151 272 AIALGADAVGMARPFLK 288 (333)
T ss_pred HHHhCCCeehhhHHHHH
Confidence 886 999999999875
|
Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids. |
| >TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0028 Score=56.41 Aligned_cols=175 Identities=17% Similarity=0.192 Sum_probs=105.7
Q ss_pred CCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHHHHHHHHcCccceecc
Q psy9039 43 PPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQAAGLDFIRAE 122 (251)
Q Consensus 43 ~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g~~Fir~~ 122 (251)
+.+.+.|+ +.|.|-.. |.| ...+++++.+.++ .|+-+-.=.+ .+...-....|++.+-.+
T Consensus 45 ~~~~~~Ga-~~lHvVDL-g~~--------------n~~~i~~i~~~~~--~~v~vGGGIr--~e~v~~~l~aGa~rVvIG 104 (253)
T TIGR02129 45 KLYKDDGV-KGCHVIML-GPN--------------NDDAAKEALHAYP--GGLQVGGGIN--DTNAQEWLDEGASHVIVT 104 (253)
T ss_pred HHHHHcCC-CEEEEEEC-CCC--------------cHHHHHHHHHhCC--CCEEEeCCcC--HHHHHHHHHcCCCEEEEC
Confidence 66888999 99987544 222 2356667766666 5765554333 244444455666665542
Q ss_pred cccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhH---h------hccCCCCCCcccHH-HHHHHhhhccccEEEe
Q psy9039 123 SFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIK---K------KHSSHAITADVDIT-ETAKAASFFLSDGLII 192 (251)
Q Consensus 123 ~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~---~------k~~~~~~~~~~~i~-~~a~~a~~~~~D~v~V 192 (251)
. .+-.+..+ +.+.+.+..+++|.+.|-+--|+. . .+|-. ..++.++. +.++..+.+ +..+++
T Consensus 105 S----~av~~~~i--~~~~~~~i~~~fG~~~IvvsiD~k~~~~g~~~V~~~GW~-~~t~~~~~~e~~~~~~~~-~~~il~ 176 (253)
T TIGR02129 105 S----WLFTKGKF--DLKRLKEIVSLVGKDRLIVDLSCRKTQDGRWIVAMNKWQ-TITDLELNAETLEELSKY-CDEFLI 176 (253)
T ss_pred c----HHHhCCCC--CHHHHHHHHHHhCCCCEEEEEEEEEcCCCcEEEEECCCc-ccCCCChHHHHHHHHHhh-CCEEEE
Confidence 1 11011011 134566777888765444332332 0 11211 12344554 555555545 888888
Q ss_pred cCCCC-C--CCCCHHHHHHHHhcCCCCEEEecCC-ChHhHHHh--hc--CCEEEEeceEee
Q psy9039 193 TGNAT-G--DPADVSQLMSVKNAVDLPILIGSGV-TSDNVEHY--MT--ADALIIGSHFKQ 245 (251)
Q Consensus 193 TG~~~-g--~~~~~~~l~~vr~~~~~PV~vG~GI-~~~~v~~~--~~--ADGvIVGS~~~~ 245 (251)
|-... | ..++.++++++++.+++||++.||+ +.+++.++ +. ..++|+|.+|-.
T Consensus 177 TdI~rDGtl~G~dlel~~~l~~~~~ipVIASGGv~s~eDi~~l~~~~~g~~~aIvG~Alf~ 237 (253)
T TIGR02129 177 HAADVEGLCKGIDEELVSKLGEWSPIPITYAGGAKSIDDLDLVDELSKGKVDLTIGSALDI 237 (253)
T ss_pred eeecccCccccCCHHHHHHHHhhCCCCEEEECCCCCHHHHHHHHHhcCCCCcEEeeehHHH
Confidence 87533 3 2457899999999999999999999 68999877 42 577999988743
|
This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut. |
| >PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.00057 Score=59.76 Aligned_cols=71 Identities=20% Similarity=0.385 Sum_probs=53.5
Q ss_pred HHHHHHhhhccccEEEec---CCCCCCCCCHHHHHHHHhcCCCCEEEecCC-ChHhHHHhhc--CCEEEEeceEeec
Q psy9039 176 TETAKAASFFLSDGLIIT---GNATGDPADVSQLMSVKNAVDLPILIGSGV-TSDNVEHYMT--ADALIIGSHFKQG 246 (251)
Q Consensus 176 ~~~a~~a~~~~~D~v~VT---G~~~g~~~~~~~l~~vr~~~~~PV~vG~GI-~~~~v~~~~~--ADGvIVGS~~~~~ 246 (251)
.+.++....+|+|.+.+- +...+.....+.++++.+.+++|+++|||| +.+++..++. ||++++||...++
T Consensus 35 ~e~a~~~~~~G~~~l~i~dl~~~~~~~~~~~~~i~~i~~~~~~~l~v~GGi~~~~~~~~~~~~Ga~~v~iGs~~~~~ 111 (241)
T PRK13585 35 VEVAKRWVDAGAETLHLVDLDGAFEGERKNAEAIEKIIEAVGVPVQLGGGIRSAEDAASLLDLGVDRVILGTAAVEN 111 (241)
T ss_pred HHHHHHHHHcCCCEEEEEechhhhcCCcccHHHHHHHHHHcCCcEEEcCCcCCHHHHHHHHHcCCCEEEEChHHhhC
Confidence 445555544677777553 333344556788888888889999999999 6899999986 9999999987654
|
|
| >PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.0025 Score=55.84 Aligned_cols=148 Identities=13% Similarity=0.159 Sum_probs=81.5
Q ss_pred HHHHHHHHHHhCCCCccEEEEEeeCChHHHHHHHHHcCccceecccccccccCCCceeecCcchhHHHHHhcCCCcchhh
Q psy9039 78 MTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQAAGLDFIRAESFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVF 157 (251)
Q Consensus 78 ~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g~~Fir~~~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~ 157 (251)
...+++++++.+. .|+-+-.=... .+.+.-....|++.+-. |.. - + +.+.+.+..++++. ++
T Consensus 61 n~~~i~~i~~~~~--~pv~~gGGIrs-~edv~~l~~~G~~~viv----Gta----a-~--~~~~l~~~~~~~g~----iv 122 (228)
T PRK04128 61 NLDVVKNIIRETG--LKVQVGGGLRT-YESIKDAYEIGVENVII----GTK----A-F--DLEFLEKVTSEFEG----IT 122 (228)
T ss_pred hHHHHHHHHhhCC--CCEEEcCCCCC-HHHHHHHHHCCCCEEEE----Cch----h-c--CHHHHHHHHHHcCC----EE
Confidence 3456777777766 67666533333 33333333445544332 111 1 1 23344455566652 22
Q ss_pred hhhHhhccCCC-----CCCcccHHHHHHHhhhccccEEEecCCCC-CCCCCHHHHHHHHhcCCCCEEEecCC-ChHhHHH
Q psy9039 158 TDIKKKHSSHA-----ITADVDITETAKAASFFLSDGLIITGNAT-GDPADVSQLMSVKNAVDLPILIGSGV-TSDNVEH 230 (251)
Q Consensus 158 a~v~~k~~~~~-----~~~~~~i~~~a~~a~~~~~D~v~VTG~~~-g~~~~~~~l~~vr~~~~~PV~vG~GI-~~~~v~~ 230 (251)
-.+..|.+... ...+.+..+.++....+ +..+++|--.. |.....+.+.+. ..++||+++||| +.+++.+
T Consensus 123 vslD~~~g~v~~~gw~~~~~~~~~~~~~~~~~~-~~~ii~t~i~~dGt~~G~d~l~~~--~~~~pviasGGv~~~~Dl~~ 199 (228)
T PRK04128 123 VSLDVKGGRIAVKGWLEESSIKVEDAYEMLKNY-VNRFIYTSIERDGTLTGIEEIERF--WGDEEFIYAGGVSSAEDVKK 199 (228)
T ss_pred EEEEccCCeEecCCCeEcCCCCHHHHHHHHHHH-hCEEEEEeccchhcccCHHHHHHh--cCCCCEEEECCCCCHHHHHH
Confidence 22333333111 11334555666666545 67888887533 332333333222 258999999999 6899998
Q ss_pred hhc--CCEEEEeceEeec
Q psy9039 231 YMT--ADALIIGSHFKQG 246 (251)
Q Consensus 231 ~~~--ADGvIVGS~~~~~ 246 (251)
+.. +||+++||+|..+
T Consensus 200 l~~~g~~gvivg~al~~g 217 (228)
T PRK04128 200 LAEIGFSGVIIGKALYEG 217 (228)
T ss_pred HHHCCCCEEEEEhhhhcC
Confidence 886 9999999998544
|
|
| >PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.00074 Score=60.14 Aligned_cols=71 Identities=13% Similarity=0.243 Sum_probs=54.8
Q ss_pred HHHHHHhhhccccEEEecC---CCCCCCCCHHHHHHHHhcCCCCEEEecCC-ChHhHHHhhc--CCEEEEeceEeec
Q psy9039 176 TETAKAASFFLSDGLIITG---NATGDPADVSQLMSVKNAVDLPILIGSGV-TSDNVEHYMT--ADALIIGSHFKQG 246 (251)
Q Consensus 176 ~~~a~~a~~~~~D~v~VTG---~~~g~~~~~~~l~~vr~~~~~PV~vG~GI-~~~~v~~~~~--ADGvIVGS~~~~~ 246 (251)
.++++.-...|++.+.+|= ..++..++.+.++++.+.+++||.+|||| +.+++.+++. ++++++||++.++
T Consensus 33 ~~~a~~~~~~g~~~l~i~Dl~~~~~~~~~n~~~i~~i~~~~~~pv~~gGGi~s~~d~~~l~~~G~~~vvigs~~~~~ 109 (258)
T PRK01033 33 INAVRIFNEKEVDELIVLDIDASKRGSEPNYELIENLASECFMPLCYGGGIKTLEQAKKIFSLGVEKVSINTAALED 109 (258)
T ss_pred HHHHHHHHHcCCCEEEEEECCCCcCCCcccHHHHHHHHHhCCCCEEECCCCCCHHHHHHHHHCCCCEEEEChHHhcC
Confidence 3444443345788887754 33445567899999999899999999999 7899999886 9999999987665
|
|
| >PRK13958 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.00047 Score=59.61 Aligned_cols=48 Identities=29% Similarity=0.476 Sum_probs=36.6
Q ss_pred CCCCCCHHHHHHHHhcCCCCEEEecCCChHhHHHhh--c--CCEEEEeceEeecC
Q psy9039 197 TGDPADVSQLMSVKNAVDLPILIGSGVTSDNVEHYM--T--ADALIIGSHFKQGG 247 (251)
Q Consensus 197 ~g~~~~~~~l~~vr~~~~~PV~vG~GI~~~~v~~~~--~--ADGvIVGS~~~~~g 247 (251)
+|..-+++.++++ .+.|++++||++|+|+++++ . ..|+=|-|.+...|
T Consensus 138 tG~~~dw~~~~~~---~~~p~iLAGGL~peNV~~a~~~~~~p~gVDvsSGVE~~G 189 (207)
T PRK13958 138 TGQTYDWTILKHI---KDIPYLIAGGINSENIQTVEQLKLSHQGYDIASGIETNG 189 (207)
T ss_pred CCcEeChHHhhhc---cCCCEEEECCCCHHHHHHHHhcCCCCCEEEcccccCCCC
Confidence 3444567777655 35799999999999999865 3 78998888887655
|
|
| >PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0019 Score=65.15 Aligned_cols=165 Identities=19% Similarity=0.177 Sum_probs=109.8
Q ss_pred CCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHHHHHHHHcCccceecc
Q psy9039 43 PPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQAAGLDFIRAE 122 (251)
Q Consensus 43 ~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g~~Fir~~ 122 (251)
+.++++|+ ++|-|-.+- .|-. | ...-++++|+.++ +|+---=|.-+ .+++..|+..|++.+=.-
T Consensus 77 ~~y~~~GA-~aiSVlTe~--~~F~----G------s~~~l~~vr~~v~--~PvLrKDFIid-~~QI~ea~~~GADavLLI 140 (695)
T PRK13802 77 REYEQGGA-SAISVLTEG--RRFL----G------SLDDFDKVRAAVH--IPVLRKDFIVT-DYQIWEARAHGADLVLLI 140 (695)
T ss_pred HHHHHcCC-cEEEEecCc--CcCC----C------CHHHHHHHHHhCC--CCEEeccccCC-HHHHHHHHHcCCCEeehh
Confidence 56888999 999875443 2222 2 3355677888888 78655444444 678888888999887652
Q ss_pred cccccccCCCceeec-CcchhHHHHHhcCCCcchhhhhhHhhccCCCCCCcccHHHHHHHhhhccccEEEecCCCCC-CC
Q psy9039 123 SFVFGHMADEGLMNA-QAGPLLRYRKQIGADNVLVFTDIKKKHSSHAITADVDITETAKAASFFLSDGLIITGNATG-DP 200 (251)
Q Consensus 123 ~~~~~~~~~~Gli~~-da~e~~~~r~~l~~~~i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~~~~~D~v~VTG~~~g-~~ 200 (251)
-.++.. +..++.++.+.+|.+-+-.+ ...+.++.|...+++.++|--..-. ..
T Consensus 141 ---------~~~L~~~~l~~l~~~a~~lGme~LvEv----------------h~~~el~~a~~~ga~iiGINnRdL~tf~ 195 (695)
T PRK13802 141 ---------VAALDDAQLKHLLDLAHELGMTVLVET----------------HTREEIERAIAAGAKVIGINARNLKDLK 195 (695)
T ss_pred ---------HhhcCHHHHHHHHHHHHHcCCeEEEEe----------------CCHHHHHHHHhCCCCEEEEeCCCCccce
Confidence 122222 46778888888887332221 2233445555568999988765322 23
Q ss_pred CCHHHHHHHHhcC--CCCEEEecCC-ChHhHHHhhc--CCEEEEeceEeecCe
Q psy9039 201 ADVSQLMSVKNAV--DLPILIGSGV-TSDNVEHYMT--ADALIIGSHFKQGGR 248 (251)
Q Consensus 201 ~~~~~l~~vr~~~--~~PV~vG~GI-~~~~v~~~~~--ADGvIVGS~~~~~g~ 248 (251)
.+++...++.... +..++.-+|| +++++..+.+ +||+.||++|++..+
T Consensus 196 vd~~~t~~L~~~ip~~~~~VsESGI~~~~d~~~l~~~G~davLIGeslm~~~d 248 (695)
T PRK13802 196 VDVNKYNELAADLPDDVIKVAESGVFGAVEVEDYARAGADAVLVGEGVATADD 248 (695)
T ss_pred eCHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHHHHHCCCCEEEECHHhhCCCC
Confidence 3555555666554 5677888999 7999999986 999999999998643
|
|
| >PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0017 Score=62.48 Aligned_cols=164 Identities=14% Similarity=0.098 Sum_probs=108.1
Q ss_pred CCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHHHHHHHHcCccceecc
Q psy9039 43 PPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQAAGLDFIRAE 122 (251)
Q Consensus 43 ~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g~~Fir~~ 122 (251)
+.+ ++|+ ++|-+-.+- .|-.. ...-++++|+.++ .|+---=|.-+ .++...|+..|++.+-.-
T Consensus 77 ~~y-~~gA-~aiSVlTe~--~~F~G----------s~~~l~~vr~~v~--~PvLrKDFiid-~~QI~ea~~~GADavLLI 139 (454)
T PRK09427 77 RVY-KHYA-SAISVLTDE--KYFQG----------SFDFLPIVRAIVT--QPILCKDFIID-PYQIYLARYYGADAILLM 139 (454)
T ss_pred HHH-HcCC-eEEEEecCc--CcCCC----------CHHHHHHHHHhCC--CCEEeccccCC-HHHHHHHHHcCCCchhHH
Confidence 445 7778 888875543 33322 3344567888877 78765544445 678888888998876642
Q ss_pred cccccccCCCceeec-CcchhHHHHHhcCCCcchhhhhhHhhccCCCCCCcccHHHHHHHhhhccccEEEecCCCCC-CC
Q psy9039 123 SFVFGHMADEGLMNA-QAGPLLRYRKQIGADNVLVFTDIKKKHSSHAITADVDITETAKAASFFLSDGLIITGNATG-DP 200 (251)
Q Consensus 123 ~~~~~~~~~~Gli~~-da~e~~~~r~~l~~~~i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~~~~~D~v~VTG~~~g-~~ 200 (251)
-+++.+ +..++.++.+.+|.+.+-.+ | .++.++.|...+++.++|-...-. ..
T Consensus 140 ---------~~~L~~~~l~~l~~~a~~lGl~~lvEv---------h-------~~~El~~al~~~a~iiGiNnRdL~t~~ 194 (454)
T PRK09427 140 ---------LSVLDDEQYRQLAAVAHSLNMGVLTEV---------S-------NEEELERAIALGAKVIGINNRNLRDLS 194 (454)
T ss_pred ---------HHhCCHHHHHHHHHHHHHcCCcEEEEE---------C-------CHHHHHHHHhCCCCEEEEeCCCCccce
Confidence 122332 46778888999987433221 2 233445555568999998765322 23
Q ss_pred CCHHHHHHHHhcC--CCCEEEecCC-ChHhHHHhhc-CCEEEEeceEeecCe
Q psy9039 201 ADVSQLMSVKNAV--DLPILIGSGV-TSDNVEHYMT-ADALIIGSHFKQGGR 248 (251)
Q Consensus 201 ~~~~~l~~vr~~~--~~PV~vG~GI-~~~~v~~~~~-ADGvIVGS~~~~~g~ 248 (251)
.+++.-.++.... +..++.-||| |++++..+.. +||+-||++|++..+
T Consensus 195 vd~~~~~~l~~~ip~~~~~vseSGI~t~~d~~~~~~~~davLiG~~lm~~~d 246 (454)
T PRK09427 195 IDLNRTRELAPLIPADVIVISESGIYTHAQVRELSPFANGFLIGSSLMAEDD 246 (454)
T ss_pred ECHHHHHHHHhhCCCCcEEEEeCCCCCHHHHHHHHhcCCEEEECHHHcCCCC
Confidence 3555555555554 5777888999 7999998877 999999999998643
|
|
| >PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.00078 Score=59.26 Aligned_cols=69 Identities=17% Similarity=0.249 Sum_probs=54.9
Q ss_pred HHHHhhh-ccccEEEe---cCCCCCCCCCHHHHHHHHhcCCCCEEEecCC-ChHhHHHhhc--CCEEEEeceEeec
Q psy9039 178 TAKAASF-FLSDGLII---TGNATGDPADVSQLMSVKNAVDLPILIGSGV-TSDNVEHYMT--ADALIIGSHFKQG 246 (251)
Q Consensus 178 ~a~~a~~-~~~D~v~V---TG~~~g~~~~~~~l~~vr~~~~~PV~vG~GI-~~~~v~~~~~--ADGvIVGS~~~~~ 246 (251)
.|+.-.. .|+|-+-+ +|...+...+.+.++++.+.+++||.+|||| |.+++++++. ||-+|+||...++
T Consensus 36 ~a~~~~~~~Ga~~l~ivDLd~a~~~~~~n~~~I~~i~~~~~~pi~vGGGIrs~e~v~~~l~~Ga~kvvigt~a~~~ 111 (234)
T PRK13587 36 SIAYYSQFECVNRIHIVDLIGAKAQHAREFDYIKSLRRLTTKDIEVGGGIRTKSQIMDYFAAGINYCIVGTKGIQD 111 (234)
T ss_pred HHHHHHhccCCCEEEEEECcccccCCcchHHHHHHHHhhcCCeEEEcCCcCCHHHHHHHHHCCCCEEEECchHhcC
Confidence 4443332 46676655 6666677777899999999889999999999 6899999997 9999999987665
|
|
| >PRK10605 N-ethylmaleimide reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.00026 Score=66.15 Aligned_cols=70 Identities=13% Similarity=0.058 Sum_probs=50.6
Q ss_pred HHHhhhccccEEEecCCCC-CCCC-CHHHHHHHHhcCCCCEEEecCCChHhHHHhhc---CCEEEEeceEeecCe
Q psy9039 179 AKAASFFLSDGLIITGNAT-GDPA-DVSQLMSVKNAVDLPILIGSGVTSDNVEHYMT---ADALIIGSHFKQGGR 248 (251)
Q Consensus 179 a~~a~~~~~D~v~VTG~~~-g~~~-~~~~l~~vr~~~~~PV~vG~GI~~~~v~~~~~---ADGvIVGS~~~~~g~ 248 (251)
++..+..|+|.+=||+... +..+ .....+++|+.+++||+++++++++.+.++++ ||.|-+|-.|+-|-+
T Consensus 255 ~~~L~~~giD~i~vs~~~~~~~~~~~~~~~~~ik~~~~~pv~~~G~~~~~~ae~~i~~G~~D~V~~gR~~iadPd 329 (362)
T PRK10605 255 IEQLGKRGIAYLHMSEPDWAGGEPYSDAFREKVRARFHGVIIGAGAYTAEKAETLIGKGLIDAVAFGRDYIANPD 329 (362)
T ss_pred HHHHHHcCCCEEEeccccccCCccccHHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHcCCCCEEEECHHhhhCcc
Confidence 3333334678887775321 1111 23445789999999999999999999999984 999999999887754
|
|
| >COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0024 Score=58.81 Aligned_cols=71 Identities=23% Similarity=0.382 Sum_probs=57.8
Q ss_pred HHHHHHHhhhccccEEEecCCCCCC----CCCHHHHHHHHhcCC-CCEEEecCC-ChHhHHHhhc---CCEEEEeceEee
Q psy9039 175 ITETAKAASFFLSDGLIITGNATGD----PADVSQLMSVKNAVD-LPILIGSGV-TSDNVEHYMT---ADALIIGSHFKQ 245 (251)
Q Consensus 175 i~~~a~~a~~~~~D~v~VTG~~~g~----~~~~~~l~~vr~~~~-~PV~vG~GI-~~~~v~~~~~---ADGvIVGS~~~~ 245 (251)
..++++.++..|++++.|=|..... +.+++.|.++|+.++ +||+..|+| +++++.+.++ +|||.+|-....
T Consensus 154 ~~~ia~~~~~~g~~~ltVHgRtr~~~y~~~ad~~~I~~vk~~~~~ipvi~NGdI~s~~~a~~~l~~tg~DgVMigRga~~ 233 (323)
T COG0042 154 ALEIARILEDAGADALTVHGRTRAQGYLGPADWDYIKELKEAVPSIPVIANGDIKSLEDAKEMLEYTGADGVMIGRGALG 233 (323)
T ss_pred HHHHHHHHHhcCCCEEEEecccHHhcCCCccCHHHHHHHHHhCCCCeEEeCCCcCCHHHHHHHHHhhCCCEEEEcHHHcc
Confidence 4567777777899999998753322 357899999999997 999999999 7999999995 999999976544
|
|
| >COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0011 Score=57.28 Aligned_cols=164 Identities=15% Similarity=0.216 Sum_probs=92.5
Q ss_pred CCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHH-HHHHHHHcCccceec
Q psy9039 43 PPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKA-ALATAQAAGLDFIRA 121 (251)
Q Consensus 43 ~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~-~~~ia~a~g~~Fir~ 121 (251)
++..+.|+ |.+ |+=|..+. .-.++.. .++++.+..+.. + -|.++.|.... -..++...+.++++.
T Consensus 16 ~~a~~~ga-d~i------G~If~~~S-pR~Vs~~----~a~~i~~~v~~~-~-~VgVf~n~~~~~i~~i~~~~~ld~VQl 81 (208)
T COG0135 16 KAAAKAGA-DYI------GFIFVPKS-PRYVSPE----QAREIASAVPKV-K-VVGVFVNESIEEILEIAEELGLDAVQL 81 (208)
T ss_pred HHHHHcCC-CEE------EEEEcCCC-CCcCCHH----HHHHHHHhCCCC-C-EEEEECCCCHHHHHHHHHhcCCCEEEE
Confidence 67788999 988 44454430 1122222 334444444311 1 45566676443 466777777889886
Q ss_pred ccccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHhhccCCCCCCcccHHHHHHHhhhccccEEEecC------C
Q psy9039 122 ESFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSSHAITADVDITETAKAASFFLSDGLIITG------N 195 (251)
Q Consensus 122 ~~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~~~~~D~v~VTG------~ 195 (251)
+ | - -+.+.+.+.+.+++..-++.+ .+.. ...+ .......+-+|.+.+=. .
T Consensus 82 H---G-------~--e~~~~~~~l~~~~~~~v~kai---~v~~-------~~~~--~~~~~~~~~~d~~LlDa~~~~~~G 137 (208)
T COG0135 82 H---G-------D--EDPEYIDQLKEELGVPVIKAI---SVSE-------EGDL--ELAAREEGPVDAILLDAKVPGLPG 137 (208)
T ss_pred C---C-------C--CCHHHHHHHHhhcCCceEEEE---EeCC-------ccch--hhhhhccCCccEEEEcCCCCCCCC
Confidence 4 1 1 133444455555433333332 2111 0011 11111224577766533 1
Q ss_pred CCCCCCCHHHHHHHHhcCCCCEEEecCCChHhHHHhhc--C-CEEEEeceEeec
Q psy9039 196 ATGDPADVSQLMSVKNAVDLPILIGSGVTSDNVEHYMT--A-DALIIGSHFKQG 246 (251)
Q Consensus 196 ~~g~~~~~~~l~~vr~~~~~PV~vG~GI~~~~v~~~~~--A-DGvIVGS~~~~~ 246 (251)
.+|..-+++.+... ....|++++||+||+|+.++++ . .|+=|.|.+..+
T Consensus 138 GtG~~fDW~~l~~~--~~~~~~~LAGGL~p~NV~~ai~~~~p~gvDvSSGVE~~ 189 (208)
T COG0135 138 GTGQTFDWNLLPKL--RLSKPVMLAGGLNPDNVAEAIALGPPYGVDVSSGVESS 189 (208)
T ss_pred CCCcEECHHHhccc--cccCCEEEECCCCHHHHHHHHHhcCCceEEeccccccC
Confidence 23444467777665 4578999999999999999996 5 999999988766
|
|
| >PRK09722 allulose-6-phosphate 3-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0088 Score=52.58 Aligned_cols=165 Identities=17% Similarity=0.213 Sum_probs=94.8
Q ss_pred CCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHHHHHHHHcCccceecc
Q psy9039 43 PPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQAAGLDFIRAE 122 (251)
Q Consensus 43 ~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g~~Fir~~ 122 (251)
+.|.+ |+ |.+-+==+ |-=|.....-||.+ ++++|+.++ .|+=+-++...|...+..-...|++.+-..
T Consensus 22 ~~l~~-g~-d~lH~DiM-DG~FVPN~tfg~~~-------i~~ir~~t~--~~~DvHLMv~~P~~~i~~~~~aGad~it~H 89 (229)
T PRK09722 22 EFLNS-KA-DYFHIDIM-DGHFVPNLTLSPFF-------VSQVKKLAS--KPLDVHLMVTDPQDYIDQLADAGADFITLH 89 (229)
T ss_pred HHHHh-CC-CEEEEecc-cCccCCCcccCHHH-------HHHHHhcCC--CCeEEEEEecCHHHHHHHHHHcCCCEEEEC
Confidence 55656 78 88865222 22355555556655 455666666 688888888775444444344577776654
Q ss_pred cccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHhhccCCCCCCcccHHHHHHHhhhccccEEEecCCCCCCC--
Q psy9039 123 SFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSSHAITADVDITETAKAASFFLSDGLIITGNATGDP-- 200 (251)
Q Consensus 123 ~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~~~~~D~v~VTG~~~g~~-- 200 (251)
.. ... .+....+++-+++|. |.|+.+ .+.-+++.+..-. ..+|.+-+-....|..
T Consensus 90 ~E----a~~-----~~~~~~i~~Ik~~G~-----------kaGlal-nP~T~~~~l~~~l--~~vD~VLvMsV~PGf~GQ 146 (229)
T PRK09722 90 PE----TIN-----GQAFRLIDEIRRAGM-----------KVGLVL-NPETPVESIKYYI--HLLDKITVMTVDPGFAGQ 146 (229)
T ss_pred cc----CCc-----chHHHHHHHHHHcCC-----------CEEEEe-CCCCCHHHHHHHH--HhcCEEEEEEEcCCCcch
Confidence 21 100 123345666667765 112222 1122333331111 2477776654444432
Q ss_pred ----CCHHHHHHHHhcC-----CCCEEEecCCChHhHHHhhc--CCEEEEece
Q psy9039 201 ----ADVSQLMSVKNAV-----DLPILIGSGVTSDNVEHYMT--ADALIIGSH 242 (251)
Q Consensus 201 ----~~~~~l~~vr~~~-----~~PV~vG~GI~~~~v~~~~~--ADGvIVGS~ 242 (251)
...++++++|+.. ++-+-+=|||+.+|+.++.+ ||.+++||+
T Consensus 147 ~fi~~~l~KI~~lr~~~~~~~~~~~IeVDGGI~~~~i~~~~~aGad~~V~Gss 199 (229)
T PRK09722 147 PFIPEMLDKIAELKALRERNGLEYLIEVDGSCNQKTYEKLMEAGADVFIVGTS 199 (229)
T ss_pred hccHHHHHHHHHHHHHHHhcCCCeEEEEECCCCHHHHHHHHHcCCCEEEEChH
Confidence 2246677666542 46699999999999999986 999999954
|
|
| >PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.00047 Score=60.41 Aligned_cols=121 Identities=18% Similarity=0.275 Sum_probs=78.3
Q ss_pred HHHHHH-cCccceecccccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHhhccCCCCCCcccHHHHHHHhhhcc
Q psy9039 108 LATAQA-AGLDFIRAESFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSSHAITADVDITETAKAASFFL 186 (251)
Q Consensus 108 ~~ia~a-~g~~Fir~~~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~~~~ 186 (251)
.-+|.. .+-+|+... -.+++--+.||..|.++..+.|-.+...++ |.+++|. -.++..+..|
T Consensus 82 A~laRe~~~t~wIKLE-----Vi~D~~~L~PD~~etl~Aae~Lv~eGF~Vl---------PY~~~D~---v~akrL~d~G 144 (247)
T PF05690_consen 82 ARLAREAFGTNWIKLE-----VIGDDKTLLPDPIETLKAAEILVKEGFVVL---------PYCTDDP---VLAKRLEDAG 144 (247)
T ss_dssp HHHHHHTTS-SEEEE-------BS-TTT--B-HHHHHHHHHHHHHTT-EEE---------EEE-S-H---HHHHHHHHTT
T ss_pred HHHHHHHcCCCeEEEE-----EeCCCCCcCCChhHHHHHHHHHHHCCCEEe---------ecCCCCH---HHHHHHHHCC
Confidence 334444 345888864 245666678999999999998877777776 3333332 2455566678
Q ss_pred ccEEEecCCCCCC---CCCHHHHHHHHhcCCCCEEEecCC-ChHhHHHhhc--CCEEEEeceEee
Q psy9039 187 SDGLIITGNATGD---PADVSQLMSVKNAVDLPILIGSGV-TSDNVEHYMT--ADALIIGSHFKQ 245 (251)
Q Consensus 187 ~D~v~VTG~~~g~---~~~~~~l~~vr~~~~~PV~vG~GI-~~~~v~~~~~--ADGvIVGS~~~~ 245 (251)
|.++-.=|+--|. -.+...|+.+++..++||++-.|| +|.++.+.++ ||||.|-|++-+
T Consensus 145 caavMPlgsPIGSg~Gi~n~~~l~~i~~~~~vPvIvDAGiG~pSdaa~AMElG~daVLvNTAiA~ 209 (247)
T PF05690_consen 145 CAAVMPLGSPIGSGRGIQNPYNLRIIIERADVPVIVDAGIGTPSDAAQAMELGADAVLVNTAIAK 209 (247)
T ss_dssp -SEBEEBSSSTTT---SSTHHHHHHHHHHGSSSBEEES---SHHHHHHHHHTT-SEEEESHHHHT
T ss_pred CCEEEecccccccCcCCCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHcCCceeehhhHHhc
Confidence 9988777753332 234677888998889999999999 8999999997 999999998754
|
ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C. |
| >PRK14024 phosphoribosyl isomerase A; Provisional | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0011 Score=58.50 Aligned_cols=61 Identities=13% Similarity=0.225 Sum_probs=48.9
Q ss_pred ccccEEEe---cCCCCCCCCCHHHHHHHHhcCCCCEEEecCC-ChHhHHHhhc--CCEEEEeceEeec
Q psy9039 185 FLSDGLII---TGNATGDPADVSQLMSVKNAVDLPILIGSGV-TSDNVEHYMT--ADALIIGSHFKQG 246 (251)
Q Consensus 185 ~~~D~v~V---TG~~~g~~~~~~~l~~vr~~~~~PV~vG~GI-~~~~v~~~~~--ADGvIVGS~~~~~ 246 (251)
+|+|-+.+ .+.. +...+.+.++++.+.+++||.+|||| |.+++..++. ||-+++||++.+|
T Consensus 44 ~g~~~l~ivDLd~~~-g~~~n~~~i~~i~~~~~~pv~vgGGirs~edv~~~l~~Ga~kvviGs~~l~~ 110 (241)
T PRK14024 44 DGAEWIHLVDLDAAF-GRGSNRELLAEVVGKLDVKVELSGGIRDDESLEAALATGCARVNIGTAALEN 110 (241)
T ss_pred CCCCEEEEEeccccC-CCCccHHHHHHHHHHcCCCEEEcCCCCCHHHHHHHHHCCCCEEEECchHhCC
Confidence 45555433 3333 55566789999999999999999999 7899999996 9999999998775
|
|
| >PF04481 DUF561: Protein of unknown function (DUF561); InterPro: IPR007570 Protein in this entry are of unknown function and are found in cyanobacteria and the chloroplasts of algae | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.0014 Score=56.74 Aligned_cols=151 Identities=17% Similarity=0.285 Sum_probs=91.2
Q ss_pred HHHHHHHHHHhCCCCccEEEEEeeCChHHHHHHHHHcCccceecccccccccCCCceeecCcchhHHHHHhcCC--Ccch
Q psy9039 78 MTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQAAGLDFIRAESFVFGHMADEGLMNAQAGPLLRYRKQIGA--DNVL 155 (251)
Q Consensus 78 ~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g~~Fir~~~~~~~~~~~~Gli~~da~e~~~~r~~l~~--~~i~ 155 (251)
...+++.+|+.+. +|+.|.-.- ...+--|...|++.++...|-. .-.+|..- .++|++...++... +++.
T Consensus 49 dp~LV~~~~~~s~--lPICVSaVe---p~~f~~aV~AGAdliEIGNfDs--FY~qGr~f-~a~eVL~Lt~~tR~LLP~~~ 120 (242)
T PF04481_consen 49 DPELVKLAKSLSN--LPICVSAVE---PELFVAAVKAGADLIEIGNFDS--FYAQGRRF-SAEEVLALTRETRSLLPDIT 120 (242)
T ss_pred CHHHHHHHHHhCC--CCeEeecCC---HHHHHHHHHhCCCEEEecchHH--HHhcCCee-cHHHHHHHHHHHHHhCCCCc
Confidence 3456677777777 799998653 3567777889999999743222 11334221 24455543333221 2332
Q ss_pred hhhhhHhhccCCCCCCcccHHHHHHHhh---hccccEEEecCCCCCCCC-------------CHHHHHHHHhcCCCCEEE
Q psy9039 156 VFTDIKKKHSSHAITADVDITETAKAAS---FFLSDGLIITGNATGDPA-------------DVSQLMSVKNAVDLPILI 219 (251)
Q Consensus 156 i~a~v~~k~~~~~~~~~~~i~~~a~~a~---~~~~D~v~VTG~~~g~~~-------------~~~~l~~vr~~~~~PV~v 219 (251)
+ .|..-|= .++.+..+.|. ..|+|.+=.-|..+..+. ++.---.+.+.+++||+.
T Consensus 121 L--sVTVPHi-------L~ld~Qv~LA~~L~~~GaDiIQTEGgtss~p~~~g~lglIekaapTLAaay~ISr~v~iPVlc 191 (242)
T PF04481_consen 121 L--SVTVPHI-------LPLDQQVQLAEDLVKAGADIIQTEGGTSSKPTSPGILGLIEKAAPTLAAAYAISRAVSIPVLC 191 (242)
T ss_pred e--EEecCcc-------ccHHHHHHHHHHHHHhCCcEEEcCCCCCCCCCCcchHHHHHHHhHHHHHHHHHHhccCCceEe
Confidence 2 1222221 34555555554 469999977776544331 112222455667999999
Q ss_pred ecCCChHhHHHhhc--CCEEEEeceEee
Q psy9039 220 GSGVTSDNVEHYMT--ADALIIGSHFKQ 245 (251)
Q Consensus 220 G~GI~~~~v~~~~~--ADGvIVGS~~~~ 245 (251)
.+|++.-++--.+. |.|+=|||++-+
T Consensus 192 ASGlS~vT~PmAiaaGAsGVGVGSavn~ 219 (242)
T PF04481_consen 192 ASGLSAVTAPMAIAAGASGVGVGSAVNR 219 (242)
T ss_pred ccCcchhhHHHHHHcCCcccchhHHhhh
Confidence 99999877776664 999999999865
|
As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis. |
| >PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.003 Score=58.01 Aligned_cols=116 Identities=16% Similarity=0.240 Sum_probs=77.3
Q ss_pred cCccceecccccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHhhccCCCCCCcccHHHHHHHhhhccccEEEe-
Q psy9039 114 AGLDFIRAESFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSSHAITADVDITETAKAASFFLSDGLII- 192 (251)
Q Consensus 114 ~g~~Fir~~~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~~~~~D~v~V- 192 (251)
.+-+|+... -.+++=...||..+.++..+.+-.++..++ +.++++. ..++.....|+-++-.
T Consensus 163 ~~~~~iKlE-----vi~e~~~llpd~~~~v~aa~~L~~~Gf~v~---------~yc~~d~---~~a~~l~~~g~~avmPl 225 (326)
T PRK11840 163 GGWDLVKLE-----VLGDAKTLYPDMVETLKATEILVKEGFQVM---------VYCSDDP---IAAKRLEDAGAVAVMPL 225 (326)
T ss_pred cCCCeEEEE-----EcCCCCCcccCHHHHHHHHHHHHHCCCEEE---------EEeCCCH---HHHHHHHhcCCEEEeec
Confidence 345888864 245566778888899999999833333332 1122222 2344444335543322
Q ss_pred ---cCCCCCCCCCHHHHHHHHhcCCCCEEEecCC-ChHhHHHhhc--CCEEEEeceEeecC
Q psy9039 193 ---TGNATGDPADVSQLMSVKNAVDLPILIGSGV-TSDNVEHYMT--ADALIIGSHFKQGG 247 (251)
Q Consensus 193 ---TG~~~g~~~~~~~l~~vr~~~~~PV~vG~GI-~~~~v~~~~~--ADGvIVGS~~~~~g 247 (251)
=|+..|.. +.+.|+.+++..++||+++.|| +++++++.++ |||+-+-|++.+-.
T Consensus 226 ~~pIGsg~gv~-~p~~i~~~~e~~~vpVivdAGIg~~sda~~AmelGadgVL~nSaIa~a~ 285 (326)
T PRK11840 226 GAPIGSGLGIQ-NPYTIRLIVEGATVPVLVDAGVGTASDAAVAMELGCDGVLMNTAIAEAK 285 (326)
T ss_pred cccccCCCCCC-CHHHHHHHHHcCCCcEEEeCCCCCHHHHHHHHHcCCCEEEEcceeccCC
Confidence 12222322 6788888888889999999999 7999999997 99999999998643
|
|
| >cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.0011 Score=61.93 Aligned_cols=69 Identities=25% Similarity=0.395 Sum_probs=54.4
Q ss_pred HHHHHHhhhccccEEEecCCCCCC----CCCHHHHHHHHhcCCCCEEEecCC-ChHhHHHhhc--CCEEEEeceEe
Q psy9039 176 TETAKAASFFLSDGLIITGNATGD----PADVSQLMSVKNAVDLPILIGSGV-TSDNVEHYMT--ADALIIGSHFK 244 (251)
Q Consensus 176 ~~~a~~a~~~~~D~v~VTG~~~g~----~~~~~~l~~vr~~~~~PV~vG~GI-~~~~v~~~~~--ADGvIVGS~~~ 244 (251)
.+-++.+...|+|+++||+..-.. .+..+.+.++++.+++||++-||| +..++.+.+. ||+|.+|+.|.
T Consensus 247 ~eda~~a~~~G~d~I~VSnhGGrqld~~~~~~~~L~ei~~~~~~~vi~dGGIr~g~Dv~KALaLGA~aV~iGr~~l 322 (361)
T cd04736 247 AEDAKRCIELGADGVILSNHGGRQLDDAIAPIEALAEIVAATYKPVLIDSGIRRGSDIVKALALGANAVLLGRATL 322 (361)
T ss_pred HHHHHHHHHCCcCEEEECCCCcCCCcCCccHHHHHHHHHHHhCCeEEEeCCCCCHHHHHHHHHcCCCEEEECHHHH
Confidence 445566666899999999853111 234677888888889999999999 6888888886 99999999887
|
MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). |
| >cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.0016 Score=56.12 Aligned_cols=93 Identities=22% Similarity=0.204 Sum_probs=63.8
Q ss_pred cchhhhhhHhhccC-CCCCCcccHHHHHHHhhhccccEEEecCCCCCCCCCHHHHHHHHhcCCCCEEEecCC-ChHhHHH
Q psy9039 153 NVLVFTDIKKKHSS-HAITADVDITETAKAASFFLSDGLIITGNATGDPADVSQLMSVKNAVDLPILIGSGV-TSDNVEH 230 (251)
Q Consensus 153 ~i~i~a~v~~k~~~-~~~~~~~~i~~~a~~a~~~~~D~v~VTG~~~g~~~~~~~l~~vr~~~~~PV~vG~GI-~~~~v~~ 230 (251)
.+.+++++.+.+-. ..........+.|+.....|++++-+.--..-.....+.++.+|+.+++||+++++| +++++.+
T Consensus 10 ~~~vIae~k~~sp~~~~~~~~~~~~~~A~~~~~~GA~~l~v~~~~~~~~g~~~~~~~i~~~v~iPi~~~~~i~~~~~v~~ 89 (217)
T cd00331 10 GLGVIAEVKRASPSKGLIREDFDPVEIAKAYEKAGAAAISVLTEPKYFQGSLEDLRAVREAVSLPVLRKDFIIDPYQIYE 89 (217)
T ss_pred CceEEEEecCCCCCCCcCCCCCCHHHHHHHHHHcCCCEEEEEeCccccCCCHHHHHHHHHhcCCCEEECCeecCHHHHHH
Confidence 35666655544210 001123456677777777899999775443333445788889999899999999988 5678888
Q ss_pred hhc--CCEEEEeceEee
Q psy9039 231 YMT--ADALIIGSHFKQ 245 (251)
Q Consensus 231 ~~~--ADGvIVGS~~~~ 245 (251)
+.. |||+++|+....
T Consensus 90 ~~~~Gad~v~l~~~~~~ 106 (217)
T cd00331 90 ARAAGADAVLLIVAALD 106 (217)
T ss_pred HHHcCCCEEEEeeccCC
Confidence 886 999999987543
|
IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis. |
| >PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.0013 Score=60.56 Aligned_cols=69 Identities=22% Similarity=0.277 Sum_probs=51.9
Q ss_pred HHHHHHhhhccccEEEecC---------CCCCC-CCC--HHHHHHHHhcCCCCEEEecCC-ChHhHHHhhc--CCEEEEe
Q psy9039 176 TETAKAASFFLSDGLIITG---------NATGD-PAD--VSQLMSVKNAVDLPILIGSGV-TSDNVEHYMT--ADALIIG 240 (251)
Q Consensus 176 ~~~a~~a~~~~~D~v~VTG---------~~~g~-~~~--~~~l~~vr~~~~~PV~vG~GI-~~~~v~~~~~--ADGvIVG 240 (251)
.+.++.+...|+|++.|.+ .+++. .++ +..++++++..++||++-||| ++.++.+.+. ||+|.+|
T Consensus 151 ~e~a~~l~~aGad~i~vg~~~G~~~~t~~~~g~~~~~w~l~ai~~~~~~~~ipVIAdGGI~~~~Di~KaLa~GA~aV~vG 230 (326)
T PRK05458 151 PEAVRELENAGADATKVGIGPGKVCITKIKTGFGTGGWQLAALRWCAKAARKPIIADGGIRTHGDIAKSIRFGATMVMIG 230 (326)
T ss_pred HHHHHHHHHcCcCEEEECCCCCcccccccccCCCCCccHHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHhCCCEEEec
Confidence 4456666667999976542 12222 232 345888888889999999999 7999998886 9999999
Q ss_pred ceEe
Q psy9039 241 SHFK 244 (251)
Q Consensus 241 S~~~ 244 (251)
+.|.
T Consensus 231 ~~~~ 234 (326)
T PRK05458 231 SLFA 234 (326)
T ss_pred hhhc
Confidence 9997
|
|
| >PRK06843 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.0013 Score=62.21 Aligned_cols=71 Identities=23% Similarity=0.313 Sum_probs=50.3
Q ss_pred cHHHHHHHhhhccccEEEecCCCC----------CC-CCCHHHH---HHHHhcCCCCEEEecCC-ChHhHHHhhc--CCE
Q psy9039 174 DITETAKAASFFLSDGLIITGNAT----------GD-PADVSQL---MSVKNAVDLPILIGSGV-TSDNVEHYMT--ADA 236 (251)
Q Consensus 174 ~i~~~a~~a~~~~~D~v~VTG~~~----------g~-~~~~~~l---~~vr~~~~~PV~vG~GI-~~~~v~~~~~--ADG 236 (251)
...+.++.+...|+|++.| |... |. .+.+..+ .++.+..++||++-||| ++.++.+.+. ||+
T Consensus 203 ~T~e~a~~l~~aGaD~I~v-G~g~Gs~c~tr~~~g~g~p~ltai~~v~~~~~~~~vpVIAdGGI~~~~Di~KALalGA~a 281 (404)
T PRK06843 203 VTKEAALDLISVGADCLKV-GIGPGSICTTRIVAGVGVPQITAICDVYEVCKNTNICIIADGGIRFSGDVVKAIAAGADS 281 (404)
T ss_pred CCHHHHHHHHHcCCCEEEE-CCCCCcCCcceeecCCCCChHHHHHHHHHHHhhcCCeEEEeCCCCCHHHHHHHHHcCCCE
Confidence 3345566666679999876 4221 21 2344444 44444457999999999 7999998886 999
Q ss_pred EEEeceEee
Q psy9039 237 LIIGSHFKQ 245 (251)
Q Consensus 237 vIVGS~~~~ 245 (251)
|.+||.|..
T Consensus 282 VmvGs~~ag 290 (404)
T PRK06843 282 VMIGNLFAG 290 (404)
T ss_pred EEEcceeee
Confidence 999999965
|
|
| >PLN02495 oxidoreductase, acting on the CH-CH group of donors | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0073 Score=56.97 Aligned_cols=158 Identities=16% Similarity=0.209 Sum_probs=86.5
Q ss_pred HHHHHHHHhCCCCccEEEEEee-CChHH---HHHHHHHcCccceecccccccccCCC--ceeec-C---cchhHHHHHhc
Q psy9039 80 RLCAEIRKVLPPSVPVGVQILS-GCNKA---ALATAQAAGLDFIRAESFVFGHMADE--GLMNA-Q---AGPLLRYRKQI 149 (251)
Q Consensus 80 ~~i~~vr~~~~~~~P~Gvn~~~-N~~~~---~~~ia~a~g~~Fir~~~~~~~~~~~~--Gli~~-d---a~e~~~~r~~l 149 (251)
+.++++++..++ +|+.+++.- ..... -.......|++++..|..|--..... |.... + ..++.+.-++.
T Consensus 102 ~~i~~~k~~~~~-~pvIaSi~~~~s~~~~~~~a~~~e~~GaD~iELNiSCPn~~~~r~~g~~~gq~~e~~~~i~~~Vk~~ 180 (385)
T PLN02495 102 AEFKQLKEEYPD-RILIASIMEEYNKDAWEEIIERVEETGVDALEINFSCPHGMPERKMGAAVGQDCDLLEEVCGWINAK 180 (385)
T ss_pred HHHHHHHhhCCC-CcEEEEccCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCCCCcCccchhhccCHHHHHHHHHHHHHh
Confidence 345667666643 599999854 23111 12222346788888875443211111 21111 2 22222222222
Q ss_pred CCCcchhhhhhHhhccCCCCCCcccHHHHHHHhhhccccEEEecCCCC----------------------CC-C-CC---
Q psy9039 150 GADNVLVFTDIKKKHSSHAITADVDITETAKAASFFLSDGLIITGNAT----------------------GD-P-AD--- 202 (251)
Q Consensus 150 ~~~~i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~~~~~D~v~VTG~~~----------------------g~-~-~~--- 202 (251)
- .+.++. |-+ |. . ..+..+++.+...|+|+++.+.+-. |. . +.
T Consensus 181 ~--~iPv~v----KLs-Pn-~--t~i~~ia~aa~~~Gadgi~liNT~~~~~~ID~~t~~p~~~~~~~~~~GGlSG~alkp 250 (385)
T PLN02495 181 A--TVPVWA----KMT-PN-I--TDITQPARVALKSGCEGVAAINTIMSVMGINLDTLRPEPCVEGYSTPGGYSSKAVRP 250 (385)
T ss_pred h--cCceEE----EeC-CC-h--hhHHHHHHHHHHhCCCEEEEecccCcccccccccCccccccCCCCCCCCccchhhhH
Confidence 1 233332 221 21 1 2477788888778999987754211 00 0 00
Q ss_pred --HHHHHHHHhcC------CCCEEEecCC-ChHhHHHhhc--CCEEEEeceEeecCe
Q psy9039 203 --VSQLMSVKNAV------DLPILIGSGV-TSDNVEHYMT--ADALIIGSHFKQGGR 248 (251)
Q Consensus 203 --~~~l~~vr~~~------~~PV~vG~GI-~~~~v~~~~~--ADGvIVGS~~~~~g~ 248 (251)
+..+.++++.+ ++||+.-||| |.+++.+++. |+.|.|+|++..+|-
T Consensus 251 iAl~~v~~i~~~~~~~~~~~ipIiGvGGI~s~~Da~e~i~aGAs~VQv~Ta~~~~Gp 307 (385)
T PLN02495 251 IALAKVMAIAKMMKSEFPEDRSLSGIGGVETGGDAAEFILLGADTVQVCTGVMMHGY 307 (385)
T ss_pred HHHHHHHHHHHHHhhhccCCCcEEEECCCCCHHHHHHHHHhCCCceeEeeeeeecCc
Confidence 12233344443 4899999999 7899888885 999999999998863
|
|
| >cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.00096 Score=62.79 Aligned_cols=69 Identities=28% Similarity=0.452 Sum_probs=53.4
Q ss_pred HHHHHHhhhccccEEEecCCCC----CCCCCHHHHHHHHhcC--CCCEEEecCC-ChHhHHHhhc--CCEEEEeceEe
Q psy9039 176 TETAKAASFFLSDGLIITGNAT----GDPADVSQLMSVKNAV--DLPILIGSGV-TSDNVEHYMT--ADALIIGSHFK 244 (251)
Q Consensus 176 ~~~a~~a~~~~~D~v~VTG~~~----g~~~~~~~l~~vr~~~--~~PV~vG~GI-~~~~v~~~~~--ADGvIVGS~~~ 244 (251)
.+-++.+...|+|+++|+|..- +..+..+.|.++++.+ ++||++.||| +..++.+.+. ||+|.+|+.|.
T Consensus 264 ~~dA~~a~~~G~d~I~vsnhGGr~~d~~~~t~~~L~ei~~~~~~~~~vi~dGGIr~G~Dv~KALaLGA~~v~iGr~~l 341 (383)
T cd03332 264 PDDARRAVEAGVDGVVVSNHGGRQVDGSIAALDALPEIVEAVGDRLTVLFDSGVRTGADIMKALALGAKAVLIGRPYA 341 (383)
T ss_pred HHHHHHHHHCCCCEEEEcCCCCcCCCCCcCHHHHHHHHHHHhcCCCeEEEeCCcCcHHHHHHHHHcCCCEEEEcHHHH
Confidence 4445666667999999998521 1223457788888776 5999999999 6888888886 99999999887
|
LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer. |
| >cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF) | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0025 Score=55.92 Aligned_cols=61 Identities=18% Similarity=0.324 Sum_probs=49.8
Q ss_pred ccccEEEe---cCCCCCCCCCHHHHHHHHhcCCCCEEEecCC-ChHhHHHhhc--CCEEEEeceEeec
Q psy9039 185 FLSDGLII---TGNATGDPADVSQLMSVKNAVDLPILIGSGV-TSDNVEHYMT--ADALIIGSHFKQG 246 (251)
Q Consensus 185 ~~~D~v~V---TG~~~g~~~~~~~l~~vr~~~~~PV~vG~GI-~~~~v~~~~~--ADGvIVGS~~~~~ 246 (251)
.|+|-+.+ ++.. +...+.+.++++.+.+.+|+.+|||| +.+++.+++. |+-+|+||...++
T Consensus 47 ~g~~~l~i~DLd~~~-~~~~n~~~i~~i~~~~~~~v~vgGGir~~edv~~~l~~Ga~~viigt~~~~~ 113 (233)
T cd04723 47 LGFRGLYIADLDAIM-GRGDNDEAIRELAAAWPLGLWVDGGIRSLENAQEWLKRGASRVIVGTETLPS 113 (233)
T ss_pred CCCCEEEEEeCcccc-CCCccHHHHHHHHHhCCCCEEEecCcCCHHHHHHHHHcCCCeEEEcceeccc
Confidence 36665544 4443 56667889999999889999999999 6899999997 9999999998776
|
The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl |
| >PRK14057 epimerase; Provisional | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.011 Score=52.80 Aligned_cols=179 Identities=11% Similarity=0.084 Sum_probs=101.5
Q ss_pred HhhCCCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHHHHHHHHcCccc
Q psy9039 39 RKVLPPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQAAGLDF 118 (251)
Q Consensus 39 ~~~a~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g~~F 118 (251)
.++++.|.++|+ |.+-+==+-| =|...+.-||.+.+++ |+ + .|+=+-++...|...+..-...|++.
T Consensus 35 ~~el~~l~~~g~-d~lHiDVMDG-~FVPNitfGp~~i~~i-------~~--~--~p~DvHLMV~~P~~~i~~~~~aGad~ 101 (254)
T PRK14057 35 HRYLQQLEALNQ-PLLHLDLMDG-QFCPQFTVGPWAVGQL-------PQ--T--FIKDVHLMVADQWTAAQACVKAGAHC 101 (254)
T ss_pred HHHHHHHHHCCC-CEEEEeccCC-ccCCccccCHHHHHHh-------cc--C--CCeeEEeeeCCHHHHHHHHHHhCCCE
Confidence 455588889999 9987633333 3666666788776655 32 3 47667777766544444444467777
Q ss_pred eecccccccccCCCceeecCcchhHHHHHhcCCCcchhhhh-hHhhccCCCCCCcccHHHHHHHhhhccccEEEecCCCC
Q psy9039 119 IRAESFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTD-IKKKHSSHAITADVDITETAKAASFFLSDGLIITGNAT 197 (251)
Q Consensus 119 ir~~~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~-v~~k~~~~~~~~~~~i~~~a~~a~~~~~D~v~VTG~~~ 197 (251)
+-..... .....+.+++-++.|.. +.+. -..+.|+.++ +.-+++.+..-. ..+|.+-+-....
T Consensus 102 It~H~Ea----------~~~~~~~l~~Ir~~G~k---~~~~~~~~kaGlAln-P~Tp~e~i~~~l--~~vD~VLvMtV~P 165 (254)
T PRK14057 102 ITLQAEG----------DIHLHHTLSWLGQQTVP---VIGGEMPVIRGISLC-PATPLDVIIPIL--SDVEVIQLLAVNP 165 (254)
T ss_pred EEEeecc----------ccCHHHHHHHHHHcCCC---cccccccceeEEEEC-CCCCHHHHHHHH--HhCCEEEEEEECC
Confidence 6654211 12334555666666641 0000 0001122221 112333331111 2478776644433
Q ss_pred CCC------CCHHHHHHHHhcC-----CCCEEEecCCChHhHHHhhc--CCEEEEeceEeec
Q psy9039 198 GDP------ADVSQLMSVKNAV-----DLPILIGSGVTSDNVEHYMT--ADALIIGSHFKQG 246 (251)
Q Consensus 198 g~~------~~~~~l~~vr~~~-----~~PV~vG~GI~~~~v~~~~~--ADGvIVGS~~~~~ 246 (251)
|.. ...++++++|+.. ++-+-+=|||+.+|+.++.+ ||.+++||++-.+
T Consensus 166 GfgGQ~Fi~~~l~KI~~lr~~~~~~~~~~~IeVDGGI~~~ti~~l~~aGad~~V~GSalF~~ 227 (254)
T PRK14057 166 GYGSKMRSSDLHERVAQLLCLLGDKREGKIIVIDGSLTQDQLPSLIAQGIDRVVSGSALFRD 227 (254)
T ss_pred CCCchhccHHHHHHHHHHHHHHHhcCCCceEEEECCCCHHHHHHHHHCCCCEEEEChHhhCC
Confidence 332 2245666666542 46799999999999999886 9999999998654
|
|
| >cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.0093 Score=55.91 Aligned_cols=46 Identities=11% Similarity=0.022 Sum_probs=40.0
Q ss_pred HHHHHHHHhcCCCCEEEecCC-ChHhHHHhhc---CCEEEEeceEeecCe
Q psy9039 203 VSQLMSVKNAVDLPILIGSGV-TSDNVEHYMT---ADALIIGSHFKQGGR 248 (251)
Q Consensus 203 ~~~l~~vr~~~~~PV~vG~GI-~~~~v~~~~~---ADGvIVGS~~~~~g~ 248 (251)
.+..+++|+.+++||++.||| +++++.++++ ||.|-+|-.|+.|-.
T Consensus 278 ~~~~~~ik~~~~~pvi~~G~i~~~~~~~~~l~~g~~D~V~~gR~~ladP~ 327 (370)
T cd02929 278 EPYIKFVKQVTSKPVVGVGRFTSPDKMVEVVKSGILDLIGAARPSIADPF 327 (370)
T ss_pred HHHHHHHHHHCCCCEEEeCCCCCHHHHHHHHHcCCCCeeeechHhhhCch
Confidence 566788999999999999999 6899999995 999999999887744
|
TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine. |
| >PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.0045 Score=55.20 Aligned_cols=47 Identities=47% Similarity=0.779 Sum_probs=35.7
Q ss_pred CcceEEEeeeecccccccCCCCCCCcchHHHHHHHHHhhCCCCcCCCCccEE
Q psy9039 3 QKHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQHGV 54 (251)
Q Consensus 3 ~~~~~~~~~~~~~p~~~~~pG~P~~~~~~~~i~~~a~~~a~~l~~~Gv~D~i 54 (251)
.+|++||||||+.||.+. =+|..-..|..++.+.+++.. + -.|+ +.+
T Consensus 42 GvDgiiveN~~D~Py~~~--~~~etvaaM~~i~~~v~~~~~-~-p~GV-nvL 88 (254)
T PF03437_consen 42 GVDGIIVENMGDVPYPKR--VGPETVAAMARIAREVRREVS-V-PVGV-NVL 88 (254)
T ss_pred CCCEEEEecCCCCCccCC--CCHHHHHHHHHHHHHHHHhCC-C-CEEe-eee
Confidence 589999999999999765 235555689999999999985 2 3455 444
|
It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions. |
| >PLN02535 glycolate oxidase | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.0018 Score=60.64 Aligned_cols=70 Identities=29% Similarity=0.421 Sum_probs=53.4
Q ss_pred HHHHHHhhhccccEEEecCCCCCC----CCCHHHHHHHHhcC--CCCEEEecCC-ChHhHHHhhc--CCEEEEeceEee
Q psy9039 176 TETAKAASFFLSDGLIITGNATGD----PADVSQLMSVKNAV--DLPILIGSGV-TSDNVEHYMT--ADALIIGSHFKQ 245 (251)
Q Consensus 176 ~~~a~~a~~~~~D~v~VTG~~~g~----~~~~~~l~~vr~~~--~~PV~vG~GI-~~~~v~~~~~--ADGvIVGS~~~~ 245 (251)
.+.++.+...|+|+++|+|..-.. .+....|.++++.+ ++||++-||| +..++.+.+. ||+|.||+.|..
T Consensus 234 ~~dA~~a~~~GvD~I~vsn~GGr~~d~~~~t~~~L~ev~~av~~~ipVi~dGGIr~g~Dv~KALalGA~aV~vGr~~l~ 312 (364)
T PLN02535 234 REDAIKAVEVGVAGIIVSNHGARQLDYSPATISVLEEVVQAVGGRVPVLLDGGVRRGTDVFKALALGAQAVLVGRPVIY 312 (364)
T ss_pred HHHHHHHHhcCCCEEEEeCCCcCCCCCChHHHHHHHHHHHHHhcCCCEEeeCCCCCHHHHHHHHHcCCCEEEECHHHHh
Confidence 344566666899999999863111 12356777887765 6999999999 7899888886 999999999865
|
|
| >cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.0021 Score=56.07 Aligned_cols=65 Identities=18% Similarity=0.222 Sum_probs=49.8
Q ss_pred HHHhhhccccEEEecCCCCCCCCCHHHHHHHHhcCCCCEEEecCCC---h----HhHHHhhc--CCEEEEeceEeecCe
Q psy9039 179 AKAASFFLSDGLIITGNATGDPADVSQLMSVKNAVDLPILIGSGVT---S----DNVEHYMT--ADALIIGSHFKQGGR 248 (251)
Q Consensus 179 a~~a~~~~~D~v~VTG~~~g~~~~~~~l~~vr~~~~~PV~vG~GI~---~----~~v~~~~~--ADGvIVGS~~~~~g~ 248 (251)
++.+...|+|.+.+... .+.+.++++++.+++||++.||++ + ++++++++ |+|+.+|++|.+..+
T Consensus 149 ~~~a~~~GaD~Ik~~~~-----~~~~~~~~i~~~~~~pvv~~GG~~~~~~~~~l~~~~~~~~~Ga~gv~vg~~i~~~~d 222 (235)
T cd00958 149 ARIGAELGADIVKTKYT-----GDAESFKEVVEGCPVPVVIAGGPKKDSEEEFLKMVYDAMEAGAAGVAVGRNIFQRPD 222 (235)
T ss_pred HHHHHHHCCCEEEecCC-----CCHHHHHHHHhcCCCCEEEeCCCCCCCHHHHHHHHHHHHHcCCcEEEechhhhcCCC
Confidence 34444579999988532 257889999988899999978873 2 56888886 999999999986543
|
Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies. |
| >PRK08091 ribulose-phosphate 3-epimerase; Validated | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.015 Score=51.16 Aligned_cols=173 Identities=11% Similarity=0.022 Sum_probs=99.7
Q ss_pred HhhCCCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHHHHHHHHcCccc
Q psy9039 39 RKVLPPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQAAGLDF 118 (251)
Q Consensus 39 ~~~a~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g~~F 118 (251)
.++++.|.++|+ |.+-+==+-| =|.....-||.+.++ +|+ + .|+=+-++...|...+..-...|++.
T Consensus 28 ~~el~~l~~~g~-d~lHiDVMDG-~FVPNitfGp~~i~~-------i~~--~--~~~DvHLMv~~P~~~i~~~~~aGad~ 94 (228)
T PRK08091 28 NETLTTLSENQL-RLLHFDIADG-QFSPFFTVGAIAIKQ-------FPT--H--CFKDVHLMVRDQFEVAKACVAAGADI 94 (228)
T ss_pred HHHHHHHHHCCC-CEEEEeccCC-CcCCccccCHHHHHH-------hCC--C--CCEEEEeccCCHHHHHHHHHHhCCCE
Confidence 444578889999 9987532222 366655667766544 432 3 57777777766544444434457777
Q ss_pred eecccccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHhhccCCCCCCcccHHHHHHHhhhccccEEEecCCCCC
Q psy9039 119 IRAESFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSSHAITADVDITETAKAASFFLSDGLIITGNATG 198 (251)
Q Consensus 119 ir~~~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~~~~~D~v~VTG~~~g 198 (251)
+-..... .++..+.++.-++.|. .+ |.|+.+ .+.-+++.+..-. ..+|.+-+-....|
T Consensus 95 It~H~Ea----------~~~~~~~l~~Ik~~g~-~~--------kaGlal-nP~Tp~~~i~~~l--~~vD~VLiMtV~PG 152 (228)
T PRK08091 95 VTLQVEQ----------THDLALTIEWLAKQKT-TV--------LIGLCL-CPETPISLLEPYL--DQIDLIQILTLDPR 152 (228)
T ss_pred EEEcccC----------cccHHHHHHHHHHCCC-Cc--------eEEEEE-CCCCCHHHHHHHH--hhcCEEEEEEECCC
Confidence 6654211 1234456666666663 11 112111 1112333331111 24777755443333
Q ss_pred CC------CCHHHHHHHHhcC-----CCCEEEecCCChHhHHHhhc--CCEEEEeceEeec
Q psy9039 199 DP------ADVSQLMSVKNAV-----DLPILIGSGVTSDNVEHYMT--ADALIIGSHFKQG 246 (251)
Q Consensus 199 ~~------~~~~~l~~vr~~~-----~~PV~vG~GI~~~~v~~~~~--ADGvIVGS~~~~~ 246 (251)
.. ...++++++|+.. +.-+-+=|||+.+|+.++.+ ||.+++||++-..
T Consensus 153 fgGQ~f~~~~l~KI~~lr~~~~~~~~~~~IeVDGGI~~~ti~~l~~aGaD~~V~GSalF~~ 213 (228)
T PRK08091 153 TGTKAPSDLILDRVIQVENRLGNRRVEKLISIDGSMTLELASYLKQHQIDWVVSGSALFSQ 213 (228)
T ss_pred CCCccccHHHHHHHHHHHHHHHhcCCCceEEEECCCCHHHHHHHHHCCCCEEEEChhhhCC
Confidence 21 2246677666542 46699999999999999886 9999999998654
|
|
| >PRK02506 dihydroorotate dehydrogenase 1A; Reviewed | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.014 Score=53.42 Aligned_cols=44 Identities=16% Similarity=0.308 Sum_probs=37.1
Q ss_pred HHHHHHHhcC--CCCEEEecCC-ChHhHHHhhc--CCEEEEeceEeecC
Q psy9039 204 SQLMSVKNAV--DLPILIGSGV-TSDNVEHYMT--ADALIIGSHFKQGG 247 (251)
Q Consensus 204 ~~l~~vr~~~--~~PV~vG~GI-~~~~v~~~~~--ADGvIVGS~~~~~g 247 (251)
+.+.++++.+ ++||+.-||| |.+++.+++. ||.|.|+|++...|
T Consensus 229 ~~v~~~~~~~~~~ipIig~GGI~s~~da~e~i~aGA~~Vqv~ta~~~~g 277 (310)
T PRK02506 229 ANVRAFYQRLNPSIQIIGTGGVKTGRDAFEHILCGASMVQVGTALHKEG 277 (310)
T ss_pred HHHHHHHHhcCCCCCEEEECCCCCHHHHHHHHHcCCCHHhhhHHHHHhC
Confidence 5566777776 6999999999 7899888885 99999999988754
|
|
| >cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5 | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.011 Score=55.30 Aligned_cols=64 Identities=13% Similarity=0.065 Sum_probs=45.8
Q ss_pred ccccEEEecCCC---CCC-CCCHHHHHHHHhcCCCCEEEecCC-------------------ChHhHHHhhc---CCEEE
Q psy9039 185 FLSDGLIITGNA---TGD-PADVSQLMSVKNAVDLPILIGSGV-------------------TSDNVEHYMT---ADALI 238 (251)
Q Consensus 185 ~~~D~v~VTG~~---~g~-~~~~~~l~~vr~~~~~PV~vG~GI-------------------~~~~v~~~~~---ADGvI 238 (251)
.|+|.+-||+.. ... .......+++|+.+++||++-||| +++.+.+++. ||.|-
T Consensus 247 ~gvd~i~vs~g~~~~~~~~~~~~~~~~~~k~~~~~pv~~~G~i~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~g~~D~V~ 326 (361)
T cd04747 247 AGVDIFHCSTRRFWEPEFEGSELNLAGWTKKLTGLPTITVGSVGLDGDFIGAFAGDEGASPASLDRLLERLERGEFDLVA 326 (361)
T ss_pred cCCCEEEecCCCccCCCcCccchhHHHHHHHHcCCCEEEECCcccccccccccccccccccCCHHHHHHHHHCCCCCeeh
Confidence 466776555431 111 113455677899999999999998 6788888884 99999
Q ss_pred EeceEeecCe
Q psy9039 239 IGSHFKQGGR 248 (251)
Q Consensus 239 VGS~~~~~g~ 248 (251)
+|..++.|-.
T Consensus 327 ~gR~~iadP~ 336 (361)
T cd04747 327 VGRALLSDPA 336 (361)
T ss_pred hhHHHHhCcH
Confidence 9998877643
|
Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. |
| >TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.0013 Score=58.56 Aligned_cols=48 Identities=17% Similarity=0.278 Sum_probs=42.5
Q ss_pred CCCCCHHHHHHHHhcCCCCEEEecCCChHhHHHhhc--CCEEEEeceEeec
Q psy9039 198 GDPADVSQLMSVKNAVDLPILIGSGVTSDNVEHYMT--ADALIIGSHFKQG 246 (251)
Q Consensus 198 g~~~~~~~l~~vr~~~~~PV~vG~GI~~~~v~~~~~--ADGvIVGS~~~~~ 246 (251)
|.. +.+.++++.+.+++||.+||||+.+++.+++. ||.|++||++..+
T Consensus 61 g~~-n~~~i~~i~~~~~~~v~vGGGIr~e~v~~~l~aGa~rVvIGS~av~~ 110 (253)
T TIGR02129 61 GPN-NDDAAKEALHAYPGGLQVGGGINDTNAQEWLDEGASHVIVTSWLFTK 110 (253)
T ss_pred CCC-cHHHHHHHHHhCCCCEEEeCCcCHHHHHHHHHcCCCEEEECcHHHhC
Confidence 444 77889999999999999999997799999997 9999999988765
|
This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut. |
| >COG0214 SNZ1 Pyridoxine biosynthesis enzyme [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.0066 Score=53.27 Aligned_cols=48 Identities=25% Similarity=0.376 Sum_probs=39.3
Q ss_pred CCHHHHHHHHhcCCCCE--EEecCC-ChHhHHHhhc--CCEEEEeceEeecCe
Q psy9039 201 ADVSQLMSVKNAVDLPI--LIGSGV-TSDNVEHYMT--ADALIIGSHFKQGGR 248 (251)
Q Consensus 201 ~~~~~l~~vr~~~~~PV--~vG~GI-~~~~v~~~~~--ADGvIVGS~~~~~g~ 248 (251)
...++++++++.-.+|| ++.||| ||.+++-+.. |||++|||.+-+.++
T Consensus 193 ~p~elv~~~~~~grLPVvnFAAGGvATPADAALMM~LGadGVFVGSGIFKS~~ 245 (296)
T COG0214 193 APYELVKEVAKLGRLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSSN 245 (296)
T ss_pred ChHHHHHHHHHhCCCCeEeecccCcCChhHHHHHHHhCCCeEEecccccCCCC
Confidence 34578888888878887 589999 9999888886 999999999877543
|
|
| >PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.0044 Score=54.80 Aligned_cols=62 Identities=15% Similarity=0.112 Sum_probs=50.9
Q ss_pred ccccEEEe---cCCCCCCCCCHHHHHHHHhcCCCCEEEecCC-ChHhHHHhhc--CCEEEEeceEeecC
Q psy9039 185 FLSDGLII---TGNATGDPADVSQLMSVKNAVDLPILIGSGV-TSDNVEHYMT--ADALIIGSHFKQGG 247 (251)
Q Consensus 185 ~~~D~v~V---TG~~~g~~~~~~~l~~vr~~~~~PV~vG~GI-~~~~v~~~~~--ADGvIVGS~~~~~g 247 (251)
+|+|-+.+ .|+..+...+.+.++++.+.+ .|+-+|||| |.+++..++. ||=+|+||...+|.
T Consensus 42 ~ga~~lhivDLd~a~~g~~~n~~~i~~i~~~~-~~v~vGGGIrs~e~~~~~l~~Ga~rvvigT~a~~~p 109 (241)
T PRK14114 42 EGFTLIHVVDLSKAIENSVENLPVLEKLSEFA-EHIQIGGGIRSLDYAEKLRKLGYRRQIVSSKVLEDP 109 (241)
T ss_pred CCCCEEEEEECCCcccCCcchHHHHHHHHhhc-CcEEEecCCCCHHHHHHHHHCCCCEEEECchhhCCH
Confidence 56666654 566666677788899998887 799999999 6899999997 99999999887764
|
|
| >PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.01 Score=51.11 Aligned_cols=54 Identities=19% Similarity=0.292 Sum_probs=39.9
Q ss_pred HHhhhccccEEEecCCCCCCCCCHHHHHHHHhcC--CCCEEEecCCChHhHHHhhc
Q psy9039 180 KAASFFLSDGLIITGNATGDPADVSQLMSVKNAV--DLPILIGSGVTSDNVEHYMT 233 (251)
Q Consensus 180 ~~a~~~~~D~v~VTG~~~g~~~~~~~l~~vr~~~--~~PV~vG~GI~~~~v~~~~~ 233 (251)
+....+|+|.+-.+|.........+.|+++.+.. .+-|++||||+++|+.++.+
T Consensus 134 ~~L~~lG~~rVLTSGg~~~a~~g~~~L~~lv~~a~~~i~Im~GgGv~~~nv~~l~~ 189 (201)
T PF03932_consen 134 EQLIELGFDRVLTSGGAPTALEGIENLKELVEQAKGRIEIMPGGGVRAENVPELVE 189 (201)
T ss_dssp HHHHHHT-SEEEESTTSSSTTTCHHHHHHHHHHHTTSSEEEEESS--TTTHHHHHH
T ss_pred HHHHhcCCCEEECCCCCCCHHHHHHHHHHHHHHcCCCcEEEecCCCCHHHHHHHHH
Confidence 3334469999999999877767778887765543 57899999999999998875
|
A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B. |
| >TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.0031 Score=56.00 Aligned_cols=63 Identities=14% Similarity=0.226 Sum_probs=50.1
Q ss_pred HHhhhccccEEEecCCCCCCCCCHHHHHHHHhcCCCCEEEecCCC-------hHhHHHhhc--CCEEEEeceEeecC
Q psy9039 180 KAASFFLSDGLIITGNATGDPADVSQLMSVKNAVDLPILIGSGVT-------SDNVEHYMT--ADALIIGSHFKQGG 247 (251)
Q Consensus 180 ~~a~~~~~D~v~VTG~~~g~~~~~~~l~~vr~~~~~PV~vG~GI~-------~~~v~~~~~--ADGvIVGS~~~~~g 247 (251)
+.+...|+|++.++. ..+.+.++++.+.+++||++.|||+ .+++.++++ |+|+.+|+.+.+..
T Consensus 163 ~~a~~~GADyikt~~-----~~~~~~l~~~~~~~~iPVva~GGi~~~~~~~~~~~i~~~~~aGa~Gia~g~~i~~~~ 234 (258)
T TIGR01949 163 RLGAELGADIVKTPY-----TGDIDSFRDVVKGCPAPVVVAGGPKTNSDREFLQMIKDAMEAGAAGVAVGRNIFQHD 234 (258)
T ss_pred HHHHHHCCCEEeccC-----CCCHHHHHHHHHhCCCcEEEecCCCCCCHHHHHHHHHHHHHcCCcEEehhhHhhcCC
Confidence 334447999999763 2367889998888899999999997 677888886 99999999987643
|
Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally. |
| >COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.02 Score=53.67 Aligned_cols=72 Identities=21% Similarity=0.272 Sum_probs=51.1
Q ss_pred HHHHhhhcc-ccEEEecCCCCC--CCC-------CHHHHHHHHhcCCCCEEEecCC-ChHhHHHhhc---CCEEEEeceE
Q psy9039 178 TAKAASFFL-SDGLIITGNATG--DPA-------DVSQLMSVKNAVDLPILIGSGV-TSDNVEHYMT---ADALIIGSHF 243 (251)
Q Consensus 178 ~a~~a~~~~-~D~v~VTG~~~g--~~~-------~~~~l~~vr~~~~~PV~vG~GI-~~~~v~~~~~---ADGvIVGS~~ 243 (251)
+++..+..| +|.+-+++.... ... ......++|+.+.+||++-|+| +++++.++++ ||-|.+|..|
T Consensus 242 la~~L~~~G~~d~i~vs~~~~~~~~~~~~~~~~~~~~~a~~i~~~~~~pvi~~G~i~~~~~Ae~~l~~g~aDlVa~gR~~ 321 (363)
T COG1902 242 LAKALEEAGLVDYIHVSEGGYERGGTITVSGPGYQVEFAARIKKAVRIPVIAVGGINDPEQAEEILASGRADLVAMGRPF 321 (363)
T ss_pred HHHHHHhcCCccEEEeecccccCCCCccccccchhHHHHHHHHHhcCCCEEEeCCCCCHHHHHHHHHcCCCCEEEechhh
Confidence 333334456 688877665432 111 1144556888888999999999 6899999994 9999999999
Q ss_pred eecCee
Q psy9039 244 KQGGRT 249 (251)
Q Consensus 244 ~~~g~~ 249 (251)
+.|-+|
T Consensus 322 ladP~~ 327 (363)
T COG1902 322 LADPDL 327 (363)
T ss_pred hcCccH
Confidence 887554
|
|
| >TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.0022 Score=60.17 Aligned_cols=32 Identities=25% Similarity=0.517 Sum_probs=29.0
Q ss_pred CCCEEEecCC-ChHhHHHhhc--CCEEEEeceEee
Q psy9039 214 DLPILIGSGV-TSDNVEHYMT--ADALIIGSHFKQ 245 (251)
Q Consensus 214 ~~PV~vG~GI-~~~~v~~~~~--ADGvIVGS~~~~ 245 (251)
.+||++.||| ++.++.+.+. ||+|.+||.|..
T Consensus 255 ~vpVIAdGGI~tg~di~kAlAlGAdaV~iGt~~a~ 289 (369)
T TIGR01304 255 YVHVIADGGIETSGDLVKAIACGADAVVLGSPLAR 289 (369)
T ss_pred CceEEEeCCCCCHHHHHHHHHcCCCEeeeHHHHHh
Confidence 3899999999 7999988886 999999999976
|
This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302. |
| >PRK11197 lldD L-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.0024 Score=60.06 Aligned_cols=71 Identities=27% Similarity=0.456 Sum_probs=52.5
Q ss_pred HHHHHHHhhhccccEEEecCCCCCC----CCCHHHHHHHHhcC--CCCEEEecCC-ChHhHHHhhc--CCEEEEeceEee
Q psy9039 175 ITETAKAASFFLSDGLIITGNATGD----PADVSQLMSVKNAV--DLPILIGSGV-TSDNVEHYMT--ADALIIGSHFKQ 245 (251)
Q Consensus 175 i~~~a~~a~~~~~D~v~VTG~~~g~----~~~~~~l~~vr~~~--~~PV~vG~GI-~~~~v~~~~~--ADGvIVGS~~~~ 245 (251)
..+-++.+...|+|++.|+|..--. .+..+.|.++++.. ++||++-||| +..++.+.+. ||+|.+|+.|..
T Consensus 255 s~~dA~~a~~~Gvd~I~Vs~hGGr~~d~~~~t~~~L~~i~~a~~~~~~vi~dGGIr~g~Di~KALaLGA~~V~iGr~~l~ 334 (381)
T PRK11197 255 DPEDARDAVRFGADGIVVSNHGGRQLDGVLSSARALPAIADAVKGDITILADSGIRNGLDVVRMIALGADTVLLGRAFVY 334 (381)
T ss_pred CHHHHHHHHhCCCCEEEECCCCCCCCCCcccHHHHHHHHHHHhcCCCeEEeeCCcCcHHHHHHHHHcCcCceeEhHHHHH
Confidence 3444566666799999999853111 22346677777654 6999999999 6888888886 999999998864
|
|
| >PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.0059 Score=55.12 Aligned_cols=63 Identities=14% Similarity=0.143 Sum_probs=48.6
Q ss_pred cHHHHHHHhhhccccEEEecCCCCCCCCCHHHHHHHHhcCC--CCEEEecCCChHhHHHhhc--CCEEEEeceE
Q psy9039 174 DITETAKAASFFLSDGLIITGNATGDPADVSQLMSVKNAVD--LPILIGSGVTSDNVEHYMT--ADALIIGSHF 243 (251)
Q Consensus 174 ~i~~~a~~a~~~~~D~v~VTG~~~g~~~~~~~l~~vr~~~~--~PV~vG~GI~~~~v~~~~~--ADGvIVGS~~ 243 (251)
++++ ++.|...++|++.+- .-..+.++++++..+ +|+.+-||||++|+.++.+ +|++.||+-.
T Consensus 197 tlee-a~~A~~~gaDyI~lD------~~~~e~l~~~~~~~~~~i~i~AiGGIt~~ni~~~a~~Gvd~IAvg~l~ 263 (277)
T PRK08072 197 TEEQ-VREAVAAGADIIMFD------NRTPDEIREFVKLVPSAIVTEASGGITLENLPAYGGTGVDYISLGFLT 263 (277)
T ss_pred CHHH-HHHHHHcCCCEEEEC------CCCHHHHHHHHHhcCCCceEEEECCCCHHHHHHHHHcCCCEEEEChhh
Confidence 4444 556666799999882 245677888777654 7777999999999999997 9999999743
|
|
| >PLN02363 phosphoribosylanthranilate isomerase | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.011 Score=52.89 Aligned_cols=63 Identities=16% Similarity=0.227 Sum_probs=41.5
Q ss_pred cccEEEecC--CCCCCCCCHHHHHHHHhcCCCCEEEecCCChHhHHHhhc---CCEEEEeceEee-cCe
Q psy9039 186 LSDGLIITG--NATGDPADVSQLMSVKNAVDLPILIGSGVTSDNVEHYMT---ADALIIGSHFKQ-GGR 248 (251)
Q Consensus 186 ~~D~v~VTG--~~~g~~~~~~~l~~vr~~~~~PV~vG~GI~~~~v~~~~~---ADGvIVGS~~~~-~g~ 248 (251)
.+|.+.+=. ..+|..-+++.+....-....|++++|||+++|+++++. ..|+=|-|.+.. .|.
T Consensus 169 ~~D~~LlDs~~GGtG~t~DW~~l~~~~~~~~~p~iLAGGL~peNV~~ai~~~~P~GVDVsSGVE~~pG~ 237 (256)
T PLN02363 169 LADWILVDSATGGSGKGFNWQNFKLPSVRSRNGWLLAGGLTPENVHEAVSLLKPTGVDVSSGICGPDGI 237 (256)
T ss_pred cCCEEEEeCCCCCCCCccCHHHhcccccccCCCEEEECCCCHHHHHHHHHhcCCcEEEeCCcccCCCCc
Confidence 356655432 233445566655311101246999999999999999874 889999999874 463
|
|
| >PRK07807 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.0038 Score=60.51 Aligned_cols=73 Identities=21% Similarity=0.242 Sum_probs=52.7
Q ss_pred cccHHHHHHHhhhccccEEEe---------cCCCCCC-CCCHHHHHHHHh---cCCCCEEEecCC-ChHhHHHhhc--CC
Q psy9039 172 DVDITETAKAASFFLSDGLII---------TGNATGD-PADVSQLMSVKN---AVDLPILIGSGV-TSDNVEHYMT--AD 235 (251)
Q Consensus 172 ~~~i~~~a~~a~~~~~D~v~V---------TG~~~g~-~~~~~~l~~vr~---~~~~PV~vG~GI-~~~~v~~~~~--AD 235 (251)
+....+.++.+...|+|++.| |-.-+|. .+.+..+.++.+ ..++||++-||| ++.++.+.+. ||
T Consensus 275 nv~t~~~a~~l~~aGad~v~vgig~gsictt~~~~~~~~p~~~av~~~~~~~~~~~~~via~ggi~~~~~~~~al~~ga~ 354 (479)
T PRK07807 275 NVVTAEGTRDLVEAGADIVKVGVGPGAMCTTRMMTGVGRPQFSAVLECAAAARELGAHVWADGGVRHPRDVALALAAGAS 354 (479)
T ss_pred ccCCHHHHHHHHHcCCCEEEECccCCcccccccccCCchhHHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHcCCC
Confidence 444556667776679999853 3333332 245566666665 357999999999 7999998886 99
Q ss_pred EEEEeceEe
Q psy9039 236 ALIIGSHFK 244 (251)
Q Consensus 236 GvIVGS~~~ 244 (251)
++.+||.|-
T Consensus 355 ~v~~g~~~a 363 (479)
T PRK07807 355 NVMIGSWFA 363 (479)
T ss_pred eeeccHhhc
Confidence 999999984
|
|
| >PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.00077 Score=58.99 Aligned_cols=64 Identities=20% Similarity=0.426 Sum_probs=49.3
Q ss_pred ccccEEEe---cCCCCCCCCCHHHHHHHHhcCCCCEEEecCC-ChHhHHHhhc--CCEEEEeceEeecCe
Q psy9039 185 FLSDGLII---TGNATGDPADVSQLMSVKNAVDLPILIGSGV-TSDNVEHYMT--ADALIIGSHFKQGGR 248 (251)
Q Consensus 185 ~~~D~v~V---TG~~~g~~~~~~~l~~vr~~~~~PV~vG~GI-~~~~v~~~~~--ADGvIVGS~~~~~g~ 248 (251)
+++|-+-+ .|...+...+.+.++++.+.+.+|+-+|||| +.+++.+++. ||-+|+||...+|..
T Consensus 41 ~g~~~l~ivDLdaa~~g~~~n~~~i~~i~~~~~~~i~vgGGIrs~ed~~~ll~~Ga~~Vvigt~~~~~~~ 110 (229)
T PF00977_consen 41 QGADELHIVDLDAAKEGRGSNLELIKEIAKETGIPIQVGGGIRSIEDAERLLDAGADRVVIGTEALEDPE 110 (229)
T ss_dssp TT-SEEEEEEHHHHCCTHHHHHHHHHHHHHHSSSEEEEESSE-SHHHHHHHHHTT-SEEEESHHHHHCCH
T ss_pred cCCCEEEEEEccCcccCchhHHHHHHHHHhcCCccEEEeCccCcHHHHHHHHHhCCCEEEeChHHhhchh
Confidence 45555544 4555555556788999999999999999999 6899999996 999999998877643
|
Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F .... |
| >PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.0062 Score=54.50 Aligned_cols=50 Identities=24% Similarity=0.389 Sum_probs=43.3
Q ss_pred CCCCCHHHHHHHHhcCCCCEEEecCCChHhHHHhhc--CCEEEEeceEeecCe
Q psy9039 198 GDPADVSQLMSVKNAVDLPILIGSGVTSDNVEHYMT--ADALIIGSHFKQGGR 248 (251)
Q Consensus 198 g~~~~~~~l~~vr~~~~~PV~vG~GI~~~~v~~~~~--ADGvIVGS~~~~~g~ 248 (251)
+...+.+.++++++ +++||-+||||+.+++++++. ||=||+||..++||.
T Consensus 68 g~~~n~~~i~~i~~-~~~~vqvGGGIR~e~i~~~l~~Ga~rViigT~Av~~~~ 119 (262)
T PLN02446 68 DDASLAAALEALRA-YPGGLQVGGGVNSENAMSYLDAGASHVIVTSYVFRDGQ 119 (262)
T ss_pred CCcccHHHHHHHHh-CCCCEEEeCCccHHHHHHHHHcCCCEEEEchHHHhCCC
Confidence 55556788999988 889999999997799999996 999999999888744
|
|
| >PRK11572 copper homeostasis protein CutC; Provisional | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.026 Score=50.16 Aligned_cols=54 Identities=19% Similarity=0.302 Sum_probs=40.4
Q ss_pred HHhhhccccEEEecCCCCCCCCCHHHHHHHHhcC-CCCEEEecCCChHhHHHhhc
Q psy9039 180 KAASFFLSDGLIITGNATGDPADVSQLMSVKNAV-DLPILIGSGVTSDNVEHYMT 233 (251)
Q Consensus 180 ~~a~~~~~D~v~VTG~~~g~~~~~~~l~~vr~~~-~~PV~vG~GI~~~~v~~~~~ 233 (251)
+.....|+|.+..+|.........+.|+++.+.. +.-|++||||+++|+.++..
T Consensus 135 ~~l~~lG~~rILTSGg~~~a~~g~~~L~~lv~~a~~~~Im~GgGV~~~Nv~~l~~ 189 (248)
T PRK11572 135 KQLADLGVARILTSGQQQDAEQGLSLIMELIAASDGPIIMAGAGVRLSNLHKFLD 189 (248)
T ss_pred HHHHHcCCCEEECCCCCCCHHHHHHHHHHHHHhcCCCEEEeCCCCCHHHHHHHHH
Confidence 3344569999999998766555567777766644 32399999999999998853
|
|
| >PRK06806 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.0082 Score=54.32 Aligned_cols=155 Identities=21% Similarity=0.285 Sum_probs=87.0
Q ss_pred HHHHHhCCCCccEEEEEeeCChHHHHHHHHHcCccceecccccccccCCCceeecCcchhHHHHHhcCCCcch-hhhhhH
Q psy9039 83 AEIRKVLPPSVPVGVQILSGCNKAALATAQAAGLDFIRAESFVFGHMADEGLMNAQAGPLLRYRKQIGADNVL-VFTDIK 161 (251)
Q Consensus 83 ~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g~~Fir~~~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~-i~a~v~ 161 (251)
+...+..+ +|+.+.+=-.........|...|.+.+... +.....+ -....+.++.++++++|.. +. -+..+-
T Consensus 67 ~~~a~~~~--vpv~lHlDH~~~~e~i~~Al~~G~tsVm~d---~s~~~~~-eni~~t~~v~~~a~~~gv~-veaE~ghlG 139 (281)
T PRK06806 67 VAAAKQAK--VPVAVHFDHGMTFEKIKEALEIGFTSVMFD---GSHLPLE-ENIQKTKEIVELAKQYGAT-VEAEIGRVG 139 (281)
T ss_pred HHHHHHCC--CCEEEECCCCCCHHHHHHHHHcCCCEEEEc---CCCCCHH-HHHHHHHHHHHHHHHcCCe-EEEEeeeEC
Confidence 34445567 899988733222344555566676666642 1111110 0111256666777776651 10 000000
Q ss_pred -hhccCCCC-CCcccHHHHHHHh-hhccccEEEec-CC----CCCCC-CCHHHHHHHHhcCCCCEEEec--CCChHhHHH
Q psy9039 162 -KKHSSHAI-TADVDITETAKAA-SFFLSDGLIIT-GN----ATGDP-ADVSQLMSVKNAVDLPILIGS--GVTSDNVEH 230 (251)
Q Consensus 162 -~k~~~~~~-~~~~~i~~~a~~a-~~~~~D~v~VT-G~----~~g~~-~~~~~l~~vr~~~~~PV~vG~--GI~~~~v~~ 230 (251)
...+.... .+--+.++ ++.+ +.-|+|++.++ |. ..+.+ -+.+.|+++++.+++|+++=| ||+++|+++
T Consensus 140 ~~d~~~~~~g~s~t~~ee-a~~f~~~tg~DyLAvaiG~~hg~~~~~~~l~~~~L~~i~~~~~iPlV~hG~SGI~~e~~~~ 218 (281)
T PRK06806 140 GSEDGSEDIEMLLTSTTE-AKRFAEETDVDALAVAIGNAHGMYNGDPNLRFDRLQEINDVVHIPLVLHGGSGISPEDFKK 218 (281)
T ss_pred CccCCcccccceeCCHHH-HHHHHHhhCCCEEEEccCCCCCCCCCCCccCHHHHHHHHHhcCCCEEEECCCCCCHHHHHH
Confidence 00000000 00112333 3333 34589999882 32 22222 256889999999999999999 999999999
Q ss_pred hhc--CCEEEEeceEee
Q psy9039 231 YMT--ADALIIGSHFKQ 245 (251)
Q Consensus 231 ~~~--ADGvIVGS~~~~ 245 (251)
+.+ ++++-|.|.|..
T Consensus 219 ~i~~G~~kinv~T~i~~ 235 (281)
T PRK06806 219 CIQHGIRKINVATATFN 235 (281)
T ss_pred HHHcCCcEEEEhHHHHH
Confidence 996 999999998864
|
|
| >PLN02979 glycolate oxidase | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.0047 Score=57.71 Aligned_cols=69 Identities=26% Similarity=0.430 Sum_probs=52.3
Q ss_pred HHHHHHhhhccccEEEecCCCCCC----CCCHHHHHHHHhcC--CCCEEEecCC-ChHhHHHhhc--CCEEEEeceEe
Q psy9039 176 TETAKAASFFLSDGLIITGNATGD----PADVSQLMSVKNAV--DLPILIGSGV-TSDNVEHYMT--ADALIIGSHFK 244 (251)
Q Consensus 176 ~~~a~~a~~~~~D~v~VTG~~~g~----~~~~~~l~~vr~~~--~~PV~vG~GI-~~~~v~~~~~--ADGvIVGS~~~ 244 (251)
.+-|+.+...|+|+++|+|..... ++..+.|.++++.+ ++||++-||| +..++.+.+. ||++-+|+.|.
T Consensus 234 ~~dA~~a~~~Gvd~I~VsnhGGrqld~~p~t~~~L~ei~~~~~~~~~Vi~dGGIr~G~Di~KALALGAdaV~iGrp~L 311 (366)
T PLN02979 234 GEDARIAIQAGAAGIIVSNHGARQLDYVPATISALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 311 (366)
T ss_pred HHHHHHHHhcCCCEEEECCCCcCCCCCchhHHHHHHHHHHHhCCCCeEEEeCCcCcHHHHHHHHHcCCCEEEEcHHHH
Confidence 444556666799999999974322 13356777787765 5999999999 6888877775 99999999876
|
|
| >COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.021 Score=50.10 Aligned_cols=136 Identities=21% Similarity=0.326 Sum_probs=92.2
Q ss_pred cEEEEEeeCCh-----HHH---HHHHHH-cCccceecccccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHhhc
Q psy9039 94 PVGVQILSGCN-----KAA---LATAQA-AGLDFIRAESFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKH 164 (251)
Q Consensus 94 P~Gvn~~~N~~-----~~~---~~ia~a-~g~~Fir~~~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~k~ 164 (251)
|.++.++=|.. .++ .-+|.+ .+-+|++.. ..+++--+.||.-|.++..+.+-.++..++
T Consensus 67 ~~~~~~LPNTaGc~taeEAv~tArlARE~~~t~wiKlE-----Vi~d~~tLlPD~~etl~Aae~Lv~eGF~Vl------- 134 (262)
T COG2022 67 PLGVTLLPNTAGCRTAEEAVRTARLAREALGTNWIKLE-----VIGDEKTLLPDPIETLKAAEQLVKEGFVVL------- 134 (262)
T ss_pred hcCcEeCCCccccCCHHHHHHHHHHHHHHccCCeEEEE-----EecCCcccCCChHHHHHHHHHHHhCCCEEe-------
Confidence 55666666652 222 333333 234787763 355677788999999999999877777775
Q ss_pred cCCCCCCcccHHHHHHHhhhccccEEEecCCCCC--C-CCCHHHHHHHHhcCCCCEEEecCC-ChHhHHHhhc--CCEEE
Q psy9039 165 SSHAITADVDITETAKAASFFLSDGLIITGNATG--D-PADVSQLMSVKNAVDLPILIGSGV-TSDNVEHYMT--ADALI 238 (251)
Q Consensus 165 ~~~~~~~~~~i~~~a~~a~~~~~D~v~VTG~~~g--~-~~~~~~l~~vr~~~~~PV~vG~GI-~~~~v~~~~~--ADGvI 238 (251)
|.+++| . -.++.-+..||.++--=|+--| . ..+...|+-+++..++||+|=-|| +|.++.+.++ ||+|.
T Consensus 135 --PY~~dD-~--v~arrLee~GcaavMPl~aPIGSg~G~~n~~~l~iiie~a~VPviVDAGiG~pSdAa~aMElG~DaVL 209 (262)
T COG2022 135 --PYTTDD-P--VLARRLEEAGCAAVMPLGAPIGSGLGLQNPYNLEIIIEEADVPVIVDAGIGTPSDAAQAMELGADAVL 209 (262)
T ss_pred --eccCCC-H--HHHHHHHhcCceEeccccccccCCcCcCCHHHHHHHHHhCCCCEEEeCCCCChhHHHHHHhcccceee
Confidence 332333 2 2345555568887755443222 2 224567888888889999999999 8999999997 99999
Q ss_pred EeceEeec
Q psy9039 239 IGSHFKQG 246 (251)
Q Consensus 239 VGS~~~~~ 246 (251)
+-|++-+-
T Consensus 210 ~NTAiA~A 217 (262)
T COG2022 210 LNTAIARA 217 (262)
T ss_pred hhhHhhcc
Confidence 99887543
|
|
| >COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.0062 Score=53.71 Aligned_cols=58 Identities=22% Similarity=0.515 Sum_probs=50.8
Q ss_pred EEEecCCCCCCCCCHHHHHHHHhcCCCCEEEecCC-ChHhHHHhhc--CCEEEEeceEeec
Q psy9039 189 GLIITGNATGDPADVSQLMSVKNAVDLPILIGSGV-TSDNVEHYMT--ADALIIGSHFKQG 246 (251)
Q Consensus 189 ~v~VTG~~~g~~~~~~~l~~vr~~~~~PV~vG~GI-~~~~v~~~~~--ADGvIVGS~~~~~ 246 (251)
.+=.+|+..+.+.+.+.++++.+.++.||=+|||| +.+.+..++. ++-+|+||.-++|
T Consensus 50 lVDLdgA~~g~~~n~~~i~~i~~~~~~~vQvGGGIRs~~~v~~ll~~G~~rViiGt~av~~ 110 (241)
T COG0106 50 LVDLDGAKAGGPRNLEAIKEILEATDVPVQVGGGIRSLEDVEALLDAGVARVIIGTAAVKN 110 (241)
T ss_pred EeeccccccCCcccHHHHHHHHHhCCCCEEeeCCcCCHHHHHHHHHCCCCEEEEecceecC
Confidence 33458888888888899999999999999999999 6788999996 9999999988776
|
|
| >TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.0066 Score=58.36 Aligned_cols=72 Identities=28% Similarity=0.441 Sum_probs=50.0
Q ss_pred ccHHHHHHHhhhccccEEEec-CCC----C----C-CCCCHHHHHHHHhc---CCCCEEEecCC-ChHhHHHhhc--CCE
Q psy9039 173 VDITETAKAASFFLSDGLIIT-GNA----T----G-DPADVSQLMSVKNA---VDLPILIGSGV-TSDNVEHYMT--ADA 236 (251)
Q Consensus 173 ~~i~~~a~~a~~~~~D~v~VT-G~~----~----g-~~~~~~~l~~vr~~---~~~PV~vG~GI-~~~~v~~~~~--ADG 236 (251)
....+.++.+...|+|++.|+ |.. + + ..+....+.++++. .++||++-||| ++.++.+.+. ||.
T Consensus 273 v~t~~~a~~l~~aGad~i~vg~g~G~~~~t~~~~~~g~p~~~~i~~~~~~~~~~~vpviadGGi~~~~di~kAla~GA~~ 352 (450)
T TIGR01302 273 VATAEQAKALIDAGADGLRVGIGPGSICTTRIVAGVGVPQITAVYDVAEYAAQSGIPVIADGGIRYSGDIVKALAAGADA 352 (450)
T ss_pred CCCHHHHHHHHHhCCCEEEECCCCCcCCccceecCCCccHHHHHHHHHHHHhhcCCeEEEeCCCCCHHHHHHHHHcCCCE
Confidence 334555666666799999774 221 1 1 11334555555443 57999999999 7999988886 999
Q ss_pred EEEeceEe
Q psy9039 237 LIIGSHFK 244 (251)
Q Consensus 237 vIVGS~~~ 244 (251)
|.+||.|-
T Consensus 353 V~~G~~~a 360 (450)
T TIGR01302 353 VMLGSLLA 360 (450)
T ss_pred EEECchhh
Confidence 99999884
|
This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models. |
| >cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.011 Score=53.20 Aligned_cols=64 Identities=16% Similarity=0.219 Sum_probs=49.1
Q ss_pred cHHHHHHHhhhccccEEEecCCCCCCCCCHHHHHHHHhcC--CCCEEEecCCChHhHHHhhc--CCEEEEeceEe
Q psy9039 174 DITETAKAASFFLSDGLIITGNATGDPADVSQLMSVKNAV--DLPILIGSGVTSDNVEHYMT--ADALIIGSHFK 244 (251)
Q Consensus 174 ~i~~~a~~a~~~~~D~v~VTG~~~g~~~~~~~l~~vr~~~--~~PV~vG~GI~~~~v~~~~~--ADGvIVGS~~~ 244 (251)
+++ .+..+...++|++.+-- -..+.++++++.. ++|+.+.||||++|+.++.+ +|++.|||-..
T Consensus 191 s~e-ea~~A~~~gaDyI~ld~------~~~e~l~~~~~~~~~~ipi~AiGGI~~~ni~~~a~~Gvd~Iav~sl~~ 258 (268)
T cd01572 191 TLE-QLKEALEAGADIIMLDN------MSPEELREAVALLKGRVLLEASGGITLENIRAYAETGVDYISVGALTH 258 (268)
T ss_pred CHH-HHHHHHHcCCCEEEECC------cCHHHHHHHHHHcCCCCcEEEECCCCHHHHHHHHHcCCCEEEEEeeec
Confidence 443 35566567999998732 2356777766655 59999999999999999997 99999999654
|
It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other. |
| >TIGR02708 L_lactate_ox L-lactate oxidase | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.011 Score=55.37 Aligned_cols=70 Identities=29% Similarity=0.371 Sum_probs=53.1
Q ss_pred HHHHHHhhhccccEEEecCCCCC----CCCCHHHHHHHHhcC--CCCEEEecCC-ChHhHHHhhc--CCEEEEeceEee
Q psy9039 176 TETAKAASFFLSDGLIITGNATG----DPADVSQLMSVKNAV--DLPILIGSGV-TSDNVEHYMT--ADALIIGSHFKQ 245 (251)
Q Consensus 176 ~~~a~~a~~~~~D~v~VTG~~~g----~~~~~~~l~~vr~~~--~~PV~vG~GI-~~~~v~~~~~--ADGvIVGS~~~~ 245 (251)
.+.++.+...|+|++.||+..-- .++.++.|.++++.+ ++||++-||| +..++.+.+. ||+|.||-.|..
T Consensus 239 ~eda~~a~~~Gvd~I~VS~HGGrq~~~~~a~~~~L~ei~~av~~~i~vi~dGGIr~g~Dv~KaLalGAd~V~igR~~l~ 317 (367)
T TIGR02708 239 PEDADRALKAGASGIWVTNHGGRQLDGGPAAFDSLQEVAEAVDKRVPIVFDSGVRRGQHVFKALASGADLVALGRPVIY 317 (367)
T ss_pred HHHHHHHHHcCcCEEEECCcCccCCCCCCcHHHHHHHHHHHhCCCCcEEeeCCcCCHHHHHHHHHcCCCEEEEcHHHHH
Confidence 45566666689999999985311 123457788888776 5999999999 6888888886 999999977543
|
Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence. |
| >KOG3111|consensus | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.089 Score=45.04 Aligned_cols=170 Identities=13% Similarity=0.174 Sum_probs=96.9
Q ss_pred hhCCCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCcc--EEEEEee-CCh--HHHHHHHHHc
Q psy9039 40 KVLPPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVP--VGVQILS-GCN--KAALATAQAA 114 (251)
Q Consensus 40 ~~a~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P--~Gvn~~~-N~~--~~~~~ia~a~ 114 (251)
+|.+.+.++|+ |.|-+-=+.| -|-..+.-||-++.+ +|+.+. .| |=+-++. |+. +..++.|
T Consensus 21 ~e~~~~l~~Ga-dwlHlDVMDg-~FVpNiT~G~pvV~s-------lR~~~~--~~~ffD~HmMV~~Peq~V~~~a~a--- 86 (224)
T KOG3111|consen 21 AECKKMLDAGA-DWLHLDVMDG-HFVPNITFGPPVVES-------LRKHTG--ADPFFDVHMMVENPEQWVDQMAKA--- 86 (224)
T ss_pred HHHHHHHHcCC-CeEEEeeecc-cccCCcccchHHHHH-------HHhccC--CCcceeEEEeecCHHHHHHHHHhc---
Confidence 44477889999 9998754444 477777788777555 455544 23 3333333 432 3334443
Q ss_pred CccceecccccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHhhccCCCCCCcccHHHHHHHhhhccccEEEecC
Q psy9039 115 GLDFIRAESFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSSHAITADVDITETAKAASFFLSDGLIITG 194 (251)
Q Consensus 115 g~~Fir~~~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~~~~~D~v~VTG 194 (251)
|++.+-.. +. +.. +..++.++-++.|. ++ |..+ .+.-+.+.+...+. -+|.+.|--
T Consensus 87 gas~~tfH--~E--~~q------~~~~lv~~ir~~Gm---k~--------G~al-kPgT~Ve~~~~~~~--~~D~vLvMt 142 (224)
T KOG3111|consen 87 GASLFTFH--YE--ATQ------KPAELVEKIREKGM---KV--------GLAL-KPGTPVEDLEPLAE--HVDMVLVMT 142 (224)
T ss_pred CcceEEEE--Ee--ecc------CHHHHHHHHHHcCC---ee--------eEEe-CCCCcHHHHHHhhc--cccEEEEEE
Confidence 34333222 11 111 23556666666654 22 1111 12223333322222 367766654
Q ss_pred CCCCCCC------CHHHHHHHHhcCCCCEE-EecCCChHhHHHhhc--CCEEEEeceEeecC
Q psy9039 195 NATGDPA------DVSQLMSVKNAVDLPIL-IGSGVTSDNVEHYMT--ADALIIGSHFKQGG 247 (251)
Q Consensus 195 ~~~g~~~------~~~~l~~vr~~~~~PV~-vG~GI~~~~v~~~~~--ADGvIVGS~~~~~g 247 (251)
-+.|... -+.+++.+|+....+.+ +-||++++|+....+ |+.++.||+..+-+
T Consensus 143 VePGFGGQkFme~mm~KV~~lR~kyp~l~ievDGGv~~~ti~~~a~AGAN~iVaGsavf~a~ 204 (224)
T KOG3111|consen 143 VEPGFGGQKFMEDMMPKVEWLREKYPNLDIEVDGGVGPSTIDKAAEAGANMIVAGSAVFGAA 204 (224)
T ss_pred ecCCCchhhhHHHHHHHHHHHHHhCCCceEEecCCcCcchHHHHHHcCCCEEEecceeecCC
Confidence 4444432 24677788866655555 999999999998885 99999999987654
|
|
| >PF00724 Oxidored_FMN: NADH:flavin oxidoreductase / NADH oxidase family; InterPro: IPR001155 The TIM-barrel fold is a closed barrel structure composed of an eight-fold repeat of beta-alpha units, where the eight parallel beta strands on the inside are covered by the eight alpha helices on the outside [] | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.014 Score=53.96 Aligned_cols=46 Identities=20% Similarity=0.375 Sum_probs=37.1
Q ss_pred HHHHHHHHhcCCCCEEEecCCC-hHhHHHhhc---CCEEEEeceEeecCe
Q psy9039 203 VSQLMSVKNAVDLPILIGSGVT-SDNVEHYMT---ADALIIGSHFKQGGR 248 (251)
Q Consensus 203 ~~~l~~vr~~~~~PV~vG~GI~-~~~v~~~~~---ADGvIVGS~~~~~g~ 248 (251)
....+.+|+.+++||++.|||+ ++.+.+++. ||.|-+|-.|+-|-+
T Consensus 280 ~~~a~~ik~~~~~pvi~~G~i~~~~~ae~~l~~g~~DlV~~gR~~ladPd 329 (341)
T PF00724_consen 280 LDLAEAIKKAVKIPVIGVGGIRTPEQAEKALEEGKADLVAMGRPLLADPD 329 (341)
T ss_dssp HHHHHHHHHHHSSEEEEESSTTHHHHHHHHHHTTSTSEEEESHHHHH-TT
T ss_pred hhhhhhhhhhcCceEEEEeeecchhhhHHHHhcCCceEeeccHHHHhCch
Confidence 4567788999999999999995 666888773 999999988876643
|
It is a widely distributed fold which has been found in many enzyme families that catalyse completely unrelated reactions []. The active site is always found at the C-terminal end of this domain. Proteins in this entry are a variety of NADH:flavin oxidoreductase/NADH oxidase enzymes, found mostly in bacteria or fungi, that contain a TIM-barrel fold. They commonly use FMN/FAD as cofactor and include: dimethylamine dehydrogenase trimethylamine dehydrogenase 12-oxophytodienoate reductase NADPH dehydrogenase NADH oxidase ; GO: 0010181 FMN binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GKA_B 3P67_A 3F03_K 2ABA_A 1VYR_A 1GVO_A 3KFT_B 3P8I_A 1GVQ_A 3P74_A .... |
| >TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.0058 Score=54.06 Aligned_cols=54 Identities=11% Similarity=0.055 Sum_probs=45.5
Q ss_pred cCCCCCCCCCHHHHHHHHhcCCCCEEEecCC-ChHhHHHhhc--CCEEEEeceEeecC
Q psy9039 193 TGNATGDPADVSQLMSVKNAVDLPILIGSGV-TSDNVEHYMT--ADALIIGSHFKQGG 247 (251)
Q Consensus 193 TG~~~g~~~~~~~l~~vr~~~~~PV~vG~GI-~~~~v~~~~~--ADGvIVGS~~~~~g 247 (251)
-|.. |...+.+.++++.+.+.+|+-+|||| |.+++..++. ||=+++||...++-
T Consensus 54 d~a~-g~~~n~~~i~~i~~~~~~~v~vgGGIrs~e~~~~~l~~Ga~~vvigT~a~~~p 110 (243)
T TIGR01919 54 DAAF-GGGNNEMMLEEVVKLLVVVEELSGGRRDDSSLRAALTGGRARVNGGTAALENP 110 (243)
T ss_pred CCCC-CCcchHHHHHHHHHHCCCCEEEcCCCCCHHHHHHHHHcCCCEEEECchhhCCH
Confidence 4444 55667788999999899999999999 6899999996 99999999977653
|
This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent. |
| >PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.011 Score=57.47 Aligned_cols=72 Identities=18% Similarity=0.318 Sum_probs=50.8
Q ss_pred cHHHHHHHhhhccccEEEecCCC---------CCC-CCCHHHHHHHHhc---CCCCEEEecCC-ChHhHHHhhc--CCEE
Q psy9039 174 DITETAKAASFFLSDGLIITGNA---------TGD-PADVSQLMSVKNA---VDLPILIGSGV-TSDNVEHYMT--ADAL 237 (251)
Q Consensus 174 ~i~~~a~~a~~~~~D~v~VTG~~---------~g~-~~~~~~l~~vr~~---~~~PV~vG~GI-~~~~v~~~~~--ADGv 237 (251)
...+.++.+...|+|++.|.+.. ++. .++.+.+.++++. .++||++-||| ++.++.+.+. ||.|
T Consensus 278 ~t~e~a~~l~~aGad~i~vg~g~gs~~~~r~~~~~g~p~~~~~~~~~~~~~~~~~~viadGGi~~~~di~kAla~GA~~v 357 (486)
T PRK05567 278 ATAEAARALIEAGADAVKVGIGPGSICTTRIVAGVGVPQITAIADAAEAAKKYGIPVIADGGIRYSGDIAKALAAGASAV 357 (486)
T ss_pred CCHHHHHHHHHcCCCEEEECCCCCccccceeecCCCcCHHHHHHHHHHHhccCCCeEEEcCCCCCHHHHHHHHHhCCCEE
Confidence 33555666666799999763211 111 2445666666654 36999999999 7999888886 9999
Q ss_pred EEeceEee
Q psy9039 238 IIGSHFKQ 245 (251)
Q Consensus 238 IVGS~~~~ 245 (251)
.+||+|-.
T Consensus 358 ~~G~~~a~ 365 (486)
T PRK05567 358 MLGSMLAG 365 (486)
T ss_pred EECccccc
Confidence 99999854
|
|
| >PRK07315 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.077 Score=48.31 Aligned_cols=67 Identities=24% Similarity=0.342 Sum_probs=51.5
Q ss_pred HHHhhhccccEEEec-CCCCCC-----C-CCHHHHHHHHhcC-CCCEEEecC--CChHhHHHhhc--CCEEEEeceEee
Q psy9039 179 AKAASFFLSDGLIIT-GNATGD-----P-ADVSQLMSVKNAV-DLPILIGSG--VTSDNVEHYMT--ADALIIGSHFKQ 245 (251)
Q Consensus 179 a~~a~~~~~D~v~VT-G~~~g~-----~-~~~~~l~~vr~~~-~~PV~vG~G--I~~~~v~~~~~--ADGvIVGS~~~~ 245 (251)
|+.+..-|+|++.++ |.-.|. + -+.+.|+++++.+ ++|+++=|| |+.++++++.+ ++++-|+|.+..
T Consensus 159 a~~f~~tgvD~LAv~iG~vHG~y~t~~k~l~~e~L~~i~~~~~~iPlVlhGGSGi~~e~~~~~i~~Gi~KiNv~T~i~~ 237 (293)
T PRK07315 159 AKAMVETGIDFLAAGIGNIHGPYPENWEGLDLDHLEKLTEAVPGFPIVLHGGSGIPDDQIQEAIKLGVAKVNVNTECQI 237 (293)
T ss_pred HHHHHHcCCCEEeeccccccccCCCCCCcCCHHHHHHHHHhccCCCEEEECCCCCCHHHHHHHHHcCCCEEEEccHHHH
Confidence 444334589999887 433121 2 3568999999998 599999888 99999999996 999999998763
|
|
| >TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.012 Score=52.71 Aligned_cols=64 Identities=17% Similarity=0.285 Sum_probs=46.6
Q ss_pred cHHHHHHHhhhccccEEEecCCCCCCCCCHHHHHHHHhcC--CCCEEEecCCChHhHHHhhc--CCEEEEeceEee
Q psy9039 174 DITETAKAASFFLSDGLIITGNATGDPADVSQLMSVKNAV--DLPILIGSGVTSDNVEHYMT--ADALIIGSHFKQ 245 (251)
Q Consensus 174 ~i~~~a~~a~~~~~D~v~VTG~~~g~~~~~~~l~~vr~~~--~~PV~vG~GI~~~~v~~~~~--ADGvIVGS~~~~ 245 (251)
+++ .++.|...|+|++.+-- ...+.++++.+.. .+|+.+-||||.+|+.++.+ +|++.|| ++.+
T Consensus 187 t~e-ea~~A~~~gaDyI~ld~------~~~e~lk~~v~~~~~~ipi~AsGGI~~~ni~~~a~~Gvd~Isvg-ait~ 254 (265)
T TIGR00078 187 SLE-EAEEAAEAGADIIMLDN------MKPEEIKEAVQLLKGRVLLEASGGITLDNLEEYAETGVDVISSG-ALTH 254 (265)
T ss_pred CHH-HHHHHHHcCCCEEEECC------CCHHHHHHHHHHhcCCCcEEEECCCCHHHHHHHHHcCCCEEEeC-HHHc
Confidence 444 45666678999998832 2345566555443 38999999999999999997 9999994 4444
|
Synonym: quinolinate phosphoribosyltransferase (decarboxylating) |
| >cd02808 GltS_FMN Glutamate synthase (GltS) FMN-binding domain | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.0074 Score=57.02 Aligned_cols=71 Identities=21% Similarity=0.229 Sum_probs=50.7
Q ss_pred cHHHHHHHhhhccccEEEecCCCCCC------------CCCHHHHHHHHhc-------CCCCEEEecCC-ChHhHHHhhc
Q psy9039 174 DITETAKAASFFLSDGLIITGNATGD------------PADVSQLMSVKNA-------VDLPILIGSGV-TSDNVEHYMT 233 (251)
Q Consensus 174 ~i~~~a~~a~~~~~D~v~VTG~~~g~------------~~~~~~l~~vr~~-------~~~PV~vG~GI-~~~~v~~~~~ 233 (251)
...++++.++..++|++.|+|..-|. .+....|.++++. .++||++.||| |+.++.+++.
T Consensus 226 ~~~~~a~~~~~~g~D~I~VsG~~Ggtg~~~~~~~~~~g~pt~~~L~~v~~~~~~~~~~~~i~viasGGI~~g~Dv~kala 305 (392)
T cd02808 226 GEGDIAAGVAAAGADFITIDGAEGGTGAAPLTFIDHVGLPTELGLARAHQALVKNGLRDRVSLIASGGLRTGADVAKALA 305 (392)
T ss_pred CHHHHHHHHHHcCCCEEEEeCCCCCCCCCcccccccCCccHHHHHHHHHHHHHHcCCCCCCeEEEECCCCCHHHHHHHHH
Confidence 34555555555679999999975221 1223445555443 26999999999 7899888886
Q ss_pred --CCEEEEeceEe
Q psy9039 234 --ADALIIGSHFK 244 (251)
Q Consensus 234 --ADGvIVGS~~~ 244 (251)
||+|-+|+.|.
T Consensus 306 LGAd~V~ig~~~l 318 (392)
T cd02808 306 LGADAVGIGTAAL 318 (392)
T ss_pred cCCCeeeechHHH
Confidence 99999999886
|
GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor. |
| >COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.01 Score=52.00 Aligned_cols=62 Identities=23% Similarity=0.378 Sum_probs=53.3
Q ss_pred ccccEEE---ecCCCCCCCCCHHHHHHHHhcCCCCEEEecCC-ChHhHHHhhc--CCEEEEeceEeec
Q psy9039 185 FLSDGLI---ITGNATGDPADVSQLMSVKNAVDLPILIGSGV-TSDNVEHYMT--ADALIIGSHFKQG 246 (251)
Q Consensus 185 ~~~D~v~---VTG~~~g~~~~~~~l~~vr~~~~~PV~vG~GI-~~~~v~~~~~--ADGvIVGS~~~~~ 246 (251)
.|+|=++ +|-++.+..+..+.++++-+.+.+|+.+|||| +.+++++++. ||=+-+.|+=++|
T Consensus 42 ~GADElvFlDItAs~~gr~~~~~vv~r~A~~vfiPltVGGGI~s~eD~~~ll~aGADKVSINsaAv~~ 109 (256)
T COG0107 42 EGADELVFLDITASSEGRETMLDVVERVAEQVFIPLTVGGGIRSVEDARKLLRAGADKVSINSAAVKD 109 (256)
T ss_pred cCCCeEEEEecccccccchhHHHHHHHHHhhceeeeEecCCcCCHHHHHHHHHcCCCeeeeChhHhcC
Confidence 4888775 47777777777899999999999999999999 6899999996 9999999886655
|
|
| >PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.01 Score=57.76 Aligned_cols=72 Identities=22% Similarity=0.314 Sum_probs=48.4
Q ss_pred cHHHHHHHhhhccccEEEec-CCC---C-----CC-CCCHHHHHHHH---hcCCCCEEEecCC-ChHhHHHhhc--CCEE
Q psy9039 174 DITETAKAASFFLSDGLIIT-GNA---T-----GD-PADVSQLMSVK---NAVDLPILIGSGV-TSDNVEHYMT--ADAL 237 (251)
Q Consensus 174 ~i~~~a~~a~~~~~D~v~VT-G~~---~-----g~-~~~~~~l~~vr---~~~~~PV~vG~GI-~~~~v~~~~~--ADGv 237 (251)
...+.++.+...|+|++.|. |.. + +. -+....+.+++ +..++||++-||| ++.++.+++. ||+|
T Consensus 291 ~t~~~a~~~~~aGad~I~vg~g~Gs~~~t~~~~~~g~p~~~ai~~~~~~~~~~~v~vIadGGi~~~~di~kAla~GA~~V 370 (495)
T PTZ00314 291 VTADQAKNLIDAGADGLRIGMGSGSICITQEVCAVGRPQASAVYHVARYARERGVPCIADGGIKNSGDICKALALGADCV 370 (495)
T ss_pred CCHHHHHHHHHcCCCEEEECCcCCcccccchhccCCCChHHHHHHHHHHHhhcCCeEEecCCCCCHHHHHHHHHcCCCEE
Confidence 33455666666799999763 111 1 11 13334444443 3357999999999 7999888886 9999
Q ss_pred EEeceEee
Q psy9039 238 IIGSHFKQ 245 (251)
Q Consensus 238 IVGS~~~~ 245 (251)
.+||.|..
T Consensus 371 m~G~~~a~ 378 (495)
T PTZ00314 371 MLGSLLAG 378 (495)
T ss_pred EECchhcc
Confidence 99999854
|
|
| >PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.019 Score=55.31 Aligned_cols=57 Identities=21% Similarity=0.239 Sum_probs=41.2
Q ss_pred cccEEEec--CCCCCCCCCHHHHHHHHhcCCCCEEEecCCChHhHHHhhc--CCEEEEeceEee
Q psy9039 186 LSDGLIIT--GNATGDPADVSQLMSVKNAVDLPILIGSGVTSDNVEHYMT--ADALIIGSHFKQ 245 (251)
Q Consensus 186 ~~D~v~VT--G~~~g~~~~~~~l~~vr~~~~~PV~vG~GI~~~~v~~~~~--ADGvIVGS~~~~ 245 (251)
.+|++.+= ...+|..-+++.+... ...|++++||++|+|++++.. ..|+=|-|.+..
T Consensus 374 ~~d~~LlDs~~GGtG~~~DW~~l~~~---~~~p~iLAGGL~peNV~~ai~~~P~gVDVsSGVE~ 434 (454)
T PRK09427 374 HVDRYLLDNGQGGTGQTFDWSLLPGQ---SLDNVLLAGGLNPDNCQQAAQLGCAGLDFNSGVES 434 (454)
T ss_pred CCCEEEEcCCCCCCCCccChHHhhhc---ccCCEEEECCCCHHHHHHHHhcCCCEEEeCCcccC
Confidence 46666552 1234555567766532 267999999999999999876 899999998874
|
|
| >PRK13813 orotidine 5'-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.025 Score=48.58 Aligned_cols=165 Identities=18% Similarity=0.212 Sum_probs=84.4
Q ss_pred CCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccE--EEEEeeCChHHHHHHHHHcCccceecccccc
Q psy9039 49 GVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPV--GVQILSGCNKAALATAQAAGLDFIRAESFVF 126 (251)
Q Consensus 49 Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~--Gvn~~~N~~~~~~~ia~a~g~~Fir~~~~~~ 126 (251)
-+ +++.+ |.||-.. -|| ..++++|+.+. +|+ =++.+.|.+......+...|++.+-.+.+.+
T Consensus 28 ~~-~~vk~----g~~l~~~--~G~-------~~v~~ir~~~~--i~~D~k~~di~~~~~~~~~~~~~~gad~vtvh~e~g 91 (215)
T PRK13813 28 YV-DAIKV----GWPLVLA--SGL-------GIIEELKRYAP--VIADLKVADIPNTNRLICEAVFEAGAWGIIVHGFTG 91 (215)
T ss_pred cC-CEEEE----cHHHHHh--hCH-------HHHHHHHhcCC--EEEEeeccccHHHHHHHHHHHHhCCCCEEEEcCcCC
Confidence 46 77754 6776543 354 45666776655 563 3343444433222444557777777653222
Q ss_pred cccCCCceeecCcchhHHHHHhcCCCcchhhhhhHhhccCCCCCCcccHHHHHHHhhhccccEEEecCCCCCCCCCHHHH
Q psy9039 127 GHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSSHAITADVDITETAKAASFFLSDGLIITGNATGDPADVSQL 206 (251)
Q Consensus 127 ~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~~~~~D~v~VTG~~~g~~~~~~~l 206 (251)
. ....+..++.++.|. .+.+.. .+.+-.....-...+..+++-+...|.++..... ...+++
T Consensus 92 ----~-----~~l~~~i~~~~~~g~-~~~v~~--~~~~~~~~~~~~~~~~~v~~m~~e~G~~g~~~~~------~~~~~i 153 (215)
T PRK13813 92 ----R-----DSLKAVVEAAAESGG-KVFVVV--EMSHPGALEFIQPHADKLAKLAQEAGAFGVVAPA------TRPERV 153 (215)
T ss_pred ----H-----HHHHHHHHHHHhcCC-eEEEEE--eCCCCCCCCCHHHHHHHHHHHHHHhCCCeEEECC------CcchhH
Confidence 1 123345566666654 222221 1110000000001223333333335666654322 224667
Q ss_pred HHHHhcCCCC-EEEecCCChH--hHHHhhc--CCEEEEeceEeecC
Q psy9039 207 MSVKNAVDLP-ILIGSGVTSD--NVEHYMT--ADALIIGSHFKQGG 247 (251)
Q Consensus 207 ~~vr~~~~~P-V~vG~GI~~~--~v~~~~~--ADGvIVGS~~~~~g 247 (251)
+++|+..+.+ .++=+||+++ ++.++++ ||++++||++.+..
T Consensus 154 ~~l~~~~~~~~~ivdgGI~~~g~~~~~~~~aGad~iV~Gr~I~~~~ 199 (215)
T PRK13813 154 RYIRSRLGDELKIISPGIGAQGGKAADAIKAGADYVIVGRSIYNAA 199 (215)
T ss_pred HHHHHhcCCCcEEEeCCcCCCCCCHHHHHHcCCCEEEECcccCCCC
Confidence 7777766433 2255699875 4888886 99999999987643
|
|
| >cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.014 Score=52.45 Aligned_cols=63 Identities=19% Similarity=0.253 Sum_probs=44.2
Q ss_pred cHHHHHHHhhhccccEEEecCCCCCCCCCHHHHHH----HHhcCCCCEEEecCCChHhHHHhhc--CCEEEEeceE
Q psy9039 174 DITETAKAASFFLSDGLIITGNATGDPADVSQLMS----VKNAVDLPILIGSGVTSDNVEHYMT--ADALIIGSHF 243 (251)
Q Consensus 174 ~i~~~a~~a~~~~~D~v~VTG~~~g~~~~~~~l~~----vr~~~~~PV~vG~GI~~~~v~~~~~--ADGvIVGS~~ 243 (251)
+.++ +..+...++|++.+-.. ..+.+++ +++..++|+.+.||||++|+.++.. +|++.+||.+
T Consensus 190 t~ee-a~~A~~~gaD~I~ld~~------~~e~l~~~v~~i~~~~~i~i~asGGIt~~ni~~~a~~Gad~Isvgal~ 258 (269)
T cd01568 190 TLEE-AEEALEAGADIIMLDNM------SPEELKEAVKLLKGLPRVLLEASGGITLENIRAYAETGVDVISTGALT 258 (269)
T ss_pred CHHH-HHHHHHcCCCEEEECCC------CHHHHHHHHHHhccCCCeEEEEECCCCHHHHHHHHHcCCCEEEEcHHH
Confidence 4444 45555568999988332 2233443 3332378999999999999999996 9999997654
|
It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other. |
| >PLN02617 imidazole glycerol phosphate synthase hisHF | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.012 Score=57.95 Aligned_cols=62 Identities=24% Similarity=0.307 Sum_probs=49.4
Q ss_pred ccccEEEe---cCCCCCCCCC---HHHHHHHHhcCCCCEEEecCC-Ch-----------HhHHHhhc--CCEEEEeceEe
Q psy9039 185 FLSDGLII---TGNATGDPAD---VSQLMSVKNAVDLPILIGSGV-TS-----------DNVEHYMT--ADALIIGSHFK 244 (251)
Q Consensus 185 ~~~D~v~V---TG~~~g~~~~---~~~l~~vr~~~~~PV~vG~GI-~~-----------~~v~~~~~--ADGvIVGS~~~ 244 (251)
.|+|-+.+ ||++.+.... .+.++++.+.+.+|+.+|||| +. +++++++. ||=|++||+.+
T Consensus 279 ~Gadel~~~Di~~~~~~~~~~~~~~~~i~~i~~~~~ip~~vGGGIr~~~d~~~~~~~~~e~~~~~l~~GadkV~i~s~Av 358 (538)
T PLN02617 279 DGADEVAFLNITGFRDFPLGDLPMLEVLRRASENVFVPLTVGGGIRDFTDANGRYYSSLEVASEYFRSGADKISIGSDAV 358 (538)
T ss_pred cCCCEEEEEECCCCcCCcccchhHHHHHHHHHhhCCCCEEEcCCccccccccccccchHHHHHHHHHcCCCEEEEChHHH
Confidence 48998865 7766544333 678889988899999999999 54 67899996 99999999766
Q ss_pred ec
Q psy9039 245 QG 246 (251)
Q Consensus 245 ~~ 246 (251)
++
T Consensus 359 ~~ 360 (538)
T PLN02617 359 YA 360 (538)
T ss_pred hC
Confidence 64
|
|
| >PF00697 PRAI: N-(5'phosphoribosyl)anthranilate (PRA) isomerase; InterPro: IPR001240 Indole-3-glycerol phosphate synthase (IGPS) (see IPR001468 from INTERPRO) catalyzes the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.0035 Score=53.57 Aligned_cols=61 Identities=20% Similarity=0.365 Sum_probs=41.4
Q ss_pred cEEEecCCC--CCCCCCHHHHHHHHhc-CCCCEEEecCCChHhHHHhhc---CCEEEEeceEeec-Ce
Q psy9039 188 DGLIITGNA--TGDPADVSQLMSVKNA-VDLPILIGSGVTSDNVEHYMT---ADALIIGSHFKQG-GR 248 (251)
Q Consensus 188 D~v~VTG~~--~g~~~~~~~l~~vr~~-~~~PV~vG~GI~~~~v~~~~~---ADGvIVGS~~~~~-g~ 248 (251)
|++.+=+.. +|..-+++.++++.+. .+.|++++|||+|+|+++++. ..|+=|-|.+..+ |+
T Consensus 118 d~~LlD~~~GgtG~~~dw~~~~~~~~~~~~~p~iLAGGl~p~NV~~ai~~~~p~gvDvsSGvE~~pG~ 185 (197)
T PF00697_consen 118 DYFLLDSGSGGTGKTFDWSLLKKIVESYSPKPVILAGGLNPENVREAIRQVRPYGVDVSSGVETSPGV 185 (197)
T ss_dssp SEEEEESSSTSSSS---GGGGCCCHHT-GTSTEEEESS--TTTHHHHHHHC--SEEEESGGGEEETTE
T ss_pred cEEeEccCCCcCCcccCHHHhhhhhhhcccCcEEEEcCCChHHHHHHHHhcCceEEEeCCccccCCCC
Confidence 666554322 3444466777766653 489999999999999999985 9999999998876 64
|
In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyzes N-(5-phosphoribosyl)anthranilate isomerase (PRAI) activity, the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (GATase) N-terminal domain (see IPR000991 from INTERPRO). Phosphoribosylanthranilate isomerase (PRAI) is monomeric and labile in most mesophilic microorganisms, but dimeric and stable in the hyperthermophile Thermotoga maritima (tPRAI) []. The comparison to the known 2.0 A structure of PRAI from Escherichia coli (ePRAI) shows that tPRAI has the complete TIM- or (beta alp ha)8-barrel fold, whereas helix alpha5 in ePRAI is replaced by a loop. The subunits of tPRAI associate via the N-terminal faces of their central beta-barrels. Two long, symmetry-related loops that protrude reciprocally into cavities of the other subunit provide for multiple hydrophobic interactions. Moreover, the side chains of the N-terminal methionines and the C-terminal leucines of both subunits are immobilized in a hydrophobic cluster, and the number of salt bridges is increased in tPRAI. These features appear to be mainly responsible for the high thermostability of tPRAI []. ; GO: 0004640 phosphoribosylanthranilate isomerase activity, 0006568 tryptophan metabolic process; PDB: 1V5X_A 1PII_A 1JCM_P 2KZH_A 1LBM_A 1DL3_A 1NSJ_A. |
| >PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.0092 Score=55.91 Aligned_cols=69 Identities=26% Similarity=0.430 Sum_probs=52.1
Q ss_pred HHHHHHhhhccccEEEecCCCCCC----CCCHHHHHHHHhcC--CCCEEEecCC-ChHhHHHhhc--CCEEEEeceEe
Q psy9039 176 TETAKAASFFLSDGLIITGNATGD----PADVSQLMSVKNAV--DLPILIGSGV-TSDNVEHYMT--ADALIIGSHFK 244 (251)
Q Consensus 176 ~~~a~~a~~~~~D~v~VTG~~~g~----~~~~~~l~~vr~~~--~~PV~vG~GI-~~~~v~~~~~--ADGvIVGS~~~ 244 (251)
.+-++.+...|+|+++|+|..-.. ++..+.|.++++.+ ++||++-||| +..++.+.+. ||++-||..|.
T Consensus 235 ~~dA~~a~~~Gvd~I~VsnhGGrqld~~~~t~~~L~ei~~av~~~~~vi~dGGIr~G~Dv~KALALGA~aV~iGr~~l 312 (367)
T PLN02493 235 GEDARIAIQAGAAGIIVSNHGARQLDYVPATISALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 312 (367)
T ss_pred HHHHHHHHHcCCCEEEECCCCCCCCCCchhHHHHHHHHHHHhCCCCeEEEeCCcCcHHHHHHHHHcCCCEEEEcHHHH
Confidence 344556666799999999974222 23356777777764 5999999999 6888887776 99999998875
|
|
| >PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.021 Score=50.22 Aligned_cols=62 Identities=10% Similarity=0.079 Sum_probs=46.9
Q ss_pred ccccEEEe---cCCCCCCCCCHHHHHHHHhcCCCCEEEecCC-ChHhHHHhhc--CCEEEEeceEeecC
Q psy9039 185 FLSDGLII---TGNATGDPADVSQLMSVKNAVDLPILIGSGV-TSDNVEHYMT--ADALIIGSHFKQGG 247 (251)
Q Consensus 185 ~~~D~v~V---TG~~~g~~~~~~~l~~vr~~~~~PV~vG~GI-~~~~v~~~~~--ADGvIVGS~~~~~g 247 (251)
+|+|-+.+ .+.. +...+.+.++++.+.+..|+-+|||| |.+++++++. ||=+++||...++-
T Consensus 42 ~ga~~lhivDLd~a~-~~~~n~~~i~~i~~~~~~~v~vGGGIrs~e~~~~~l~~Ga~kvvigt~a~~~p 109 (232)
T PRK13586 42 EGYTRIHVVDLDAAE-GVGNNEMYIKEISKIGFDWIQVGGGIRDIEKAKRLLSLDVNALVFSTIVFTNF 109 (232)
T ss_pred CCCCEEEEEECCCcC-CCcchHHHHHHHHhhCCCCEEEeCCcCCHHHHHHHHHCCCCEEEECchhhCCH
Confidence 45555544 4443 55556788988888543599999999 6899999997 99999999887763
|
|
| >COG4981 Enoyl reductase domain of yeast-type FAS1 [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.013 Score=56.89 Aligned_cols=159 Identities=14% Similarity=0.197 Sum_probs=97.5
Q ss_pred chHHHHHHHHHHHHHHHhCCCCccEEEEEeeCCh-HHHHHHHHHcCccceecccccccccCCCceee----cCcchhHHH
Q psy9039 71 GPEITANMTRLCAEIRKVLPPSVPVGVQILSGCN-KAALATAQAAGLDFIRAESFVFGHMADEGLMN----AQAGPLLRY 145 (251)
Q Consensus 71 gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~-~~~~~ia~a~g~~Fir~~~~~~~~~~~~Gli~----~da~e~~~~ 145 (251)
|..+.+-|+..+.++........-+++|.++-++ ...+.+- |.+.++.....| ...+|+.+ |+.++..++
T Consensus 68 Gq~t~e~~~~~i~ql~~~lepG~t~qfN~ifldpylw~~qig---~krLv~kara~G--~~I~gvvIsAGIP~le~A~El 142 (717)
T COG4981 68 GQVTEEIFTNAIEQLVSLLEPGRTAQFNSIFLDPYLWKLQIG---GKRLVQKARASG--APIDGVVISAGIPSLEEAVEL 142 (717)
T ss_pred cccCHHHHHHHHHHHHhccCCCccceeeEEEechHHhhhcCC---hHHHHHHHHhcC--CCcceEEEecCCCcHHHHHHH
Confidence 4555556777788877665543468888766553 2222221 124444432222 33555543 456777778
Q ss_pred HHhcCCCcchhhhhhHhhccCCCCCCcccHHHH---HHHhhh--ccccEEEecCCCCCCCCCH--------HHHHHHHhc
Q psy9039 146 RKQIGADNVLVFTDIKKKHSSHAITADVDITET---AKAASF--FLSDGLIITGNATGDPADV--------SQLMSVKNA 212 (251)
Q Consensus 146 r~~l~~~~i~i~a~v~~k~~~~~~~~~~~i~~~---a~~a~~--~~~D~v~VTG~~~g~~~~~--------~~l~~vr~~ 212 (251)
-+.|+.+.++.++ .|-| +++++ .+-|.. ...=.+=+||.++|...+. ....++|++
T Consensus 143 I~~L~~~G~~yv~---fKPG--------tIeqI~svi~IAka~P~~pIilq~egGraGGHHSweDld~llL~tYs~lR~~ 211 (717)
T COG4981 143 IEELGDDGFPYVA---FKPG--------TIEQIRSVIRIAKANPTFPIILQWEGGRAGGHHSWEDLDDLLLATYSELRSR 211 (717)
T ss_pred HHHHhhcCceeEE---ecCC--------cHHHHHHHHHHHhcCCCCceEEEEecCccCCccchhhcccHHHHHHHHHhcC
Confidence 8888776666653 2321 33333 222322 2445567899888875432 234578888
Q ss_pred CCCCEEEecCC-ChHhHHHhhc-------------CCEEEEeceEee
Q psy9039 213 VDLPILIGSGV-TSDNVEHYMT-------------ADALIIGSHFKQ 245 (251)
Q Consensus 213 ~~~PV~vG~GI-~~~~v~~~~~-------------ADGvIVGS~~~~ 245 (251)
-++-+|+|||| +++..+.++. -||+.|||+.+-
T Consensus 212 ~NIvl~vGgGiGtp~~aa~YLTGeWSt~~g~P~MP~DGiLvGtaaMa 258 (717)
T COG4981 212 DNIVLCVGGGIGTPDDAAPYLTGEWSTAYGFPPMPFDGILVGTAAMA 258 (717)
T ss_pred CCEEEEecCCcCChhhcccccccchhhhcCCCCCCcceeEechhHHh
Confidence 89999999999 8999887762 599999998753
|
|
| >PRK07226 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.0097 Score=53.21 Aligned_cols=63 Identities=21% Similarity=0.285 Sum_probs=46.4
Q ss_pred HHhhhccccEEEecCCCCCCCCCHHHHHHHHhcCCCCEEEecCCChHh-------HHHhhc--CCEEEEeceEeecC
Q psy9039 180 KAASFFLSDGLIITGNATGDPADVSQLMSVKNAVDLPILIGSGVTSDN-------VEHYMT--ADALIIGSHFKQGG 247 (251)
Q Consensus 180 ~~a~~~~~D~v~VTG~~~g~~~~~~~l~~vr~~~~~PV~vG~GI~~~~-------v~~~~~--ADGvIVGS~~~~~g 247 (251)
+.+...|+|.+=++ ...+.+.++++.+.+++||.+.|||+.+| +.++++ |+|+.+|+.+.+..
T Consensus 167 ~~a~e~GAD~vKt~-----~~~~~~~l~~~~~~~~ipV~a~GGi~~~~~~~~l~~v~~~~~aGA~Gis~gr~i~~~~ 238 (267)
T PRK07226 167 RVAAELGADIVKTN-----YTGDPESFREVVEGCPVPVVIAGGPKTDTDREFLEMVRDAMEAGAAGVAVGRNVFQHE 238 (267)
T ss_pred HHHHHHCCCEEeeC-----CCCCHHHHHHHHHhCCCCEEEEeCCCCCCHHHHHHHHHHHHHcCCcEEehhhhhhcCC
Confidence 33334799998433 33457888888887889999999998543 555555 99999999987654
|
|
| >PRK06801 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.18 Score=45.83 Aligned_cols=154 Identities=15% Similarity=0.216 Sum_probs=85.9
Q ss_pred HHHHHHHHHHhCCCCccEEEEEeeCChHHHHHHHHHcCccceecccccccccCCCceeecC------cchhHHHHHhcCC
Q psy9039 78 MTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQAAGLDFIRAESFVFGHMADEGLMNAQ------AGPLLRYRKQIGA 151 (251)
Q Consensus 78 ~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g~~Fir~~~~~~~~~~~~Gli~~d------a~e~~~~r~~l~~ 151 (251)
+..+++++.+..+ +|+++++=-........-|...|.+-+.. +|--.+. ..++.+++++++.
T Consensus 62 ~~~~~~~~a~~~~--vpV~lHlDH~~~~e~i~~Ai~~GftSVm~----------D~S~l~~eeNi~~t~~v~~~a~~~gv 129 (286)
T PRK06801 62 LVEAVKFEAARHD--IPVVLNLDHGLHFEAVVRALRLGFSSVMF----------DGSTLEYEENVRQTREVVKMCHAVGV 129 (286)
T ss_pred HHHHHHHHHHHCC--CCEEEECCCCCCHHHHHHHHHhCCcEEEE----------cCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 5556666776777 89999863222233344444444333332 1111121 5566667777765
Q ss_pred Ccc-hhhhhhHhhccC-CCC---CCcccHHHHHHHhh-hccccEEEec-CCCCC---C-C-CCHHHHHHHHhcCCCCEEE
Q psy9039 152 DNV-LVFTDIKKKHSS-HAI---TADVDITETAKAAS-FFLSDGLIIT-GNATG---D-P-ADVSQLMSVKNAVDLPILI 219 (251)
Q Consensus 152 ~~i-~i~a~v~~k~~~-~~~---~~~~~i~~~a~~a~-~~~~D~v~VT-G~~~g---~-~-~~~~~l~~vr~~~~~PV~v 219 (251)
+ + ..+..+-.+-.- ... .+.-+..+.++... ..|+|++.++ |...| . + -+.+.++++++.+++|+++
T Consensus 130 ~-VE~ElG~vgg~e~~v~~~~~~~~~~T~pe~a~~f~~~tgvD~LAvaiGt~Hg~y~~~~~l~~e~l~~i~~~~~~PLVl 208 (286)
T PRK06801 130 S-VEAELGAVGGDEGGALYGEADSAKFTDPQLARDFVDRTGIDALAVAIGNAHGKYKGEPKLDFARLAAIHQQTGLPLVL 208 (286)
T ss_pred e-EEeecCcccCCCCCcccCCcccccCCCHHHHHHHHHHHCcCEEEeccCCCCCCCCCCCCCCHHHHHHHHHhcCCCEEE
Confidence 1 2 112111100000 000 00012223333333 4689999872 22222 1 2 3578999999999999999
Q ss_pred ecC--CChHhHHHhhc--CCEEEEeceEe
Q psy9039 220 GSG--VTSDNVEHYMT--ADALIIGSHFK 244 (251)
Q Consensus 220 G~G--I~~~~v~~~~~--ADGvIVGS~~~ 244 (251)
=|| |+.++++++.+ ++.+=|+|.|.
T Consensus 209 HGGSgi~~e~~~~~i~~Gi~KINv~T~~~ 237 (286)
T PRK06801 209 HGGSGISDADFRRAIELGIHKINFYTGMS 237 (286)
T ss_pred ECCCCCCHHHHHHHHHcCCcEEEehhHHH
Confidence 888 99999999986 99999999874
|
|
| >TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.022 Score=51.59 Aligned_cols=67 Identities=18% Similarity=0.356 Sum_probs=52.8
Q ss_pred HHHhh-hccccEEEec-CCCCCC----C-CCHHHHHHHHhcCCCCEEEec--CCChHhHHHhhc--CCEEEEeceEee
Q psy9039 179 AKAAS-FFLSDGLIIT-GNATGD----P-ADVSQLMSVKNAVDLPILIGS--GVTSDNVEHYMT--ADALIIGSHFKQ 245 (251)
Q Consensus 179 a~~a~-~~~~D~v~VT-G~~~g~----~-~~~~~l~~vr~~~~~PV~vG~--GI~~~~v~~~~~--ADGvIVGS~~~~ 245 (251)
++.+. ..|+|++.++ |...|. + -+.+.|+++++.+++|+++=| ||+.+|++++.+ ++++=|+|.+..
T Consensus 158 a~~f~~~tgvD~Lavs~Gt~hg~~~~~~~l~~e~L~~i~~~~~iPlv~hGgSGi~~e~i~~~i~~Gi~kiNv~T~l~~ 235 (282)
T TIGR01859 158 AEQFVKETGVDYLAAAIGTSHGKYKGEPGLDFERLKEIKELTNIPLVLHGASGIPEEQIKKAIKLGIAKINIDTDCRI 235 (282)
T ss_pred HHHHHHHHCcCEEeeccCccccccCCCCccCHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHcCCCEEEECcHHHH
Confidence 44444 3699999985 653332 1 246889999999999999988 999999999996 999999998753
|
This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase. |
| >TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.02 Score=52.73 Aligned_cols=69 Identities=23% Similarity=0.350 Sum_probs=51.6
Q ss_pred HHHHHHhhhccccEEEec-C--CC------C--CCC-CCHHHHHHHHhcCCCCEEEecCC-ChHhHHHhhc--CCEEEEe
Q psy9039 176 TETAKAASFFLSDGLIIT-G--NA------T--GDP-ADVSQLMSVKNAVDLPILIGSGV-TSDNVEHYMT--ADALIIG 240 (251)
Q Consensus 176 ~~~a~~a~~~~~D~v~VT-G--~~------~--g~~-~~~~~l~~vr~~~~~PV~vG~GI-~~~~v~~~~~--ADGvIVG 240 (251)
.+.++.+...|+|++.|+ | .. + +.. ..+..+.++++..++||++-||| +..++.+.+. ||+|.+|
T Consensus 148 ~e~a~~l~~aGad~I~V~~G~G~~~~tr~~~g~g~~~~~l~ai~ev~~a~~~pVIadGGIr~~~Di~KALa~GAd~Vmig 227 (321)
T TIGR01306 148 PEAVRELENAGADATKVGIGPGKVCITKIKTGFGTGGWQLAALRWCAKAARKPIIADGGIRTHGDIAKSIRFGASMVMIG 227 (321)
T ss_pred HHHHHHHHHcCcCEEEECCCCCccccceeeeccCCCchHHHHHHHHHHhcCCeEEEECCcCcHHHHHHHHHcCCCEEeec
Confidence 445566666799999887 3 21 1 222 13457888888889999999999 6888888885 9999999
Q ss_pred ceEe
Q psy9039 241 SHFK 244 (251)
Q Consensus 241 S~~~ 244 (251)
+.|-
T Consensus 228 ~~~a 231 (321)
T TIGR01306 228 SLFA 231 (321)
T ss_pred hhhc
Confidence 9883
|
A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages. |
| >PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.024 Score=51.21 Aligned_cols=63 Identities=11% Similarity=0.153 Sum_probs=47.3
Q ss_pred cHHHHHHHhhhccccEEEecCCCCCCCCCHHHHHHHHhcC--CCCEEEecCCChHhHHHhhc--CCEEEEeceE
Q psy9039 174 DITETAKAASFFLSDGLIITGNATGDPADVSQLMSVKNAV--DLPILIGSGVTSDNVEHYMT--ADALIIGSHF 243 (251)
Q Consensus 174 ~i~~~a~~a~~~~~D~v~VTG~~~g~~~~~~~l~~vr~~~--~~PV~vG~GI~~~~v~~~~~--ADGvIVGS~~ 243 (251)
++++ +..|...++|++.. + ....+.++++.+.. ++|+.+-||||.+|++++.. +|++.+|+-.
T Consensus 198 tlee-a~eA~~~gaD~I~L-D-----~~~~e~l~~~v~~~~~~i~leAsGGIt~~ni~~~a~tGvD~Isvg~lt 264 (277)
T PRK05742 198 SLDE-LRQALAAGADIVML-D-----ELSLDDMREAVRLTAGRAKLEASGGINESTLRVIAETGVDYISIGAMT 264 (277)
T ss_pred CHHH-HHHHHHcCCCEEEE-C-----CCCHHHHHHHHHHhCCCCcEEEECCCCHHHHHHHHHcCCCEEEEChhh
Confidence 4444 45566678999866 2 22456666655544 79999999999999999997 9999999854
|
|
| >PLN02411 12-oxophytodienoate reductase | Back alignment and domain information |
|---|
Probab=95.86 E-value=0.0063 Score=57.49 Aligned_cols=45 Identities=16% Similarity=0.174 Sum_probs=38.6
Q ss_pred HHHHHHhcCCCCEEEecCCChHhHHHhhc---CCEEEEeceEeecCee
Q psy9039 205 QLMSVKNAVDLPILIGSGVTSDNVEHYMT---ADALIIGSHFKQGGRT 249 (251)
Q Consensus 205 ~l~~vr~~~~~PV~vG~GI~~~~v~~~~~---ADGvIVGS~~~~~g~~ 249 (251)
..+++|+.+++||++.||++++++.+++. ||.|-+|-.|+-|-+|
T Consensus 304 ~a~~ik~~v~~pvi~~G~i~~~~a~~~l~~g~aDlV~~gR~~iadPdl 351 (391)
T PLN02411 304 LMRTLRRAYQGTFMCSGGFTRELGMQAVQQGDADLVSYGRLFISNPDL 351 (391)
T ss_pred HHHHHHHHcCCCEEEECCCCHHHHHHHHHcCCCCEEEECHHHHhCccH
Confidence 45789999999999999999888888884 9999999998877544
|
|
| >PRK13306 ulaD 3-keto-L-gulonate-6-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.17 Score=43.95 Aligned_cols=165 Identities=13% Similarity=0.106 Sum_probs=83.7
Q ss_pred CCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHHHH-HHHHcCccceec
Q psy9039 43 PPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALA-TAQAAGLDFIRA 121 (251)
Q Consensus 43 ~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~-ia~a~g~~Fir~ 121 (251)
+.|.+ .+ |.+.| |.|+-.. -| .+.++++|+.+++ .|+-+.+-..+...... .+...|++++-+
T Consensus 23 ~~l~~-~v-~~~kv----G~~l~~~--~G-------~~~i~~lk~~~~~-~~v~~DLK~~Di~~~v~~~~~~~Gad~vTv 86 (216)
T PRK13306 23 KKVAE-EV-DIIEV----GTILLLA--EG-------MKAVRVLRALYPD-KIIVADTKIADAGKILAKMAFEAGADWVTV 86 (216)
T ss_pred HHccc-cC-CEEEE----ChHHHHH--hC-------HHHHHHHHHHCCC-CEEEEEEeecCCcHHHHHHHHHCCCCEEEE
Confidence 44443 57 88864 6665542 23 3567788877443 48888777776432222 355678888776
Q ss_pred ccccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHhhccCCCCCCcccHHHHHHHhhhcc-ccEEEecCCC---C
Q psy9039 122 ESFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSSHAITADVDITETAKAASFFL-SDGLIITGNA---T 197 (251)
Q Consensus 122 ~~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~~~~-~D~v~VTG~~---~ 197 (251)
....+ . . -..+..+..++.+. ++. +.++++. +.+++ +.....+ .|.+...+.. .
T Consensus 87 H~~a~----~-~----~i~~~~~~~~~~g~---~~~--------V~llts~-~~~~l-~~~~~~~~~~~vl~~a~~~~~~ 144 (216)
T PRK13306 87 ICAAH----I-P----TIKAALKVAKEFNG---EIQ--------IELYGNW-TWEQA-QQWRDAGISQVIYHRSRDAQLA 144 (216)
T ss_pred eCCCC----H-H----HHHHHHHHHHHcCC---EEE--------EEECCCC-CHHHH-HHHHcCChhhhhhhhhhhhhhc
Confidence 52111 0 0 01223333333332 111 1111221 22222 1111111 2333333322 2
Q ss_pred CCCCCHHHHHHHHhcC--CCCEEEecCCChHhHHHhhc--CCEEEEeceEee
Q psy9039 198 GDPADVSQLMSVKNAV--DLPILIGSGVTSDNVEHYMT--ADALIIGSHFKQ 245 (251)
Q Consensus 198 g~~~~~~~l~~vr~~~--~~PV~vG~GI~~~~v~~~~~--ADGvIVGS~~~~ 245 (251)
|..-....+.++|+.. +.-+.|-+||+++++....+ ||.+||||++-+
T Consensus 145 G~v~s~~~~~~ir~~~~~~~~i~V~gGI~~~~~~~~~~~~ad~~VvGr~I~~ 196 (216)
T PRK13306 145 GVAWGEKDLNKVKKLSDMGFKVSVTGGLVVEDLKLFKGIPVKTFIAGRAIRG 196 (216)
T ss_pred CCCCCHHHHHHHHHHhcCCCeEEEcCCCCHhhHHHHhcCCCCEEEECCcccC
Confidence 2222233344444432 34589999999999888776 999999999864
|
|
| >TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.036 Score=44.53 Aligned_cols=69 Identities=12% Similarity=0.071 Sum_probs=50.0
Q ss_pred CCcccHHHHHHHhhhccccEEEecCCCCCCCCCH-HHHHHHHhcC--CCCEEEecCCChHhHHHhhc--CCEEE
Q psy9039 170 TADVDITETAKAASFFLSDGLIITGNATGDPADV-SQLMSVKNAV--DLPILIGSGVTSDNVEHYMT--ADALI 238 (251)
Q Consensus 170 ~~~~~i~~~a~~a~~~~~D~v~VTG~~~g~~~~~-~~l~~vr~~~--~~PV~vG~GI~~~~v~~~~~--ADGvI 238 (251)
..+.+.++.++.+....+|.+++|+..+...+.. +.++++|+.. +++|++||.+.+++.+++.+ .|++|
T Consensus 37 g~~~s~e~~v~aa~e~~adii~iSsl~~~~~~~~~~~~~~L~~~g~~~i~vivGG~~~~~~~~~l~~~Gvd~~~ 110 (132)
T TIGR00640 37 PLFQTPEEIARQAVEADVHVVGVSSLAGGHLTLVPALRKELDKLGRPDILVVVGGVIPPQDFDELKEMGVAEIF 110 (132)
T ss_pred CCCCCHHHHHHHHHHcCCCEEEEcCchhhhHHHHHHHHHHHHhcCCCCCEEEEeCCCChHhHHHHHHCCCCEEE
Confidence 3446778888888878999999999875544444 5566777753 67888888887777777765 77765
|
Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2. |
| >TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family | Back alignment and domain information |
|---|
Probab=95.73 E-value=0.0071 Score=54.00 Aligned_cols=47 Identities=23% Similarity=0.483 Sum_probs=35.3
Q ss_pred CcceEEEeeeecccccccCCCCCCCcchHHHHHHHHHhhCCCCcCCCCccEE
Q psy9039 3 QKHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQHGV 54 (251)
Q Consensus 3 ~~~~~~~~~~~~~p~~~~~pG~P~~~~~~~~i~~~a~~~a~~l~~~Gv~D~i 54 (251)
.+|+|||||||++||.+. =+|.--..|..++.+.+++...- .|+ +.+
T Consensus 41 GvD~viveN~~d~P~~~~--~~p~tva~m~~i~~~v~~~~~~p--~Gv-nvL 87 (257)
T TIGR00259 41 GVDAVMFENFFDAPFLKE--VDPETVAAMAVIAGQLKSDVSIP--LGI-NVL 87 (257)
T ss_pred CCCEEEEecCCCCCCcCC--CCHHHHHHHHHHHHHHHHhcCCC--eee-eee
Confidence 589999999999999763 23555568999999999988632 455 444
|
Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis. |
| >KOG1606|consensus | Back alignment and domain information |
|---|
Probab=95.71 E-value=0.016 Score=50.23 Aligned_cols=48 Identities=25% Similarity=0.403 Sum_probs=40.1
Q ss_pred CCHHHHHHHHhcCCCCEE--EecCC-ChHhHHHhhc--CCEEEEeceEeecCe
Q psy9039 201 ADVSQLMSVKNAVDLPIL--IGSGV-TSDNVEHYMT--ADALIIGSHFKQGGR 248 (251)
Q Consensus 201 ~~~~~l~~vr~~~~~PV~--vG~GI-~~~~v~~~~~--ADGvIVGS~~~~~g~ 248 (251)
...+++++.++.-.+||+ +.||+ ||.+++-+++ |||+.|||.+-+.|+
T Consensus 194 aP~dLv~~t~q~GrlPVV~FAaGGvaTPADAALmMQLGCdGVFVGSgiFks~d 246 (296)
T KOG1606|consen 194 APYDLVKQTKQLGRLPVVNFAAGGVATPADAALMMQLGCDGVFVGSGIFKSGD 246 (296)
T ss_pred CcHHHHHHHHHcCCCceEEecccCcCChhHHHHHHHcCCCeEEeccccccCCC
Confidence 345778888888788884 78999 8999988887 999999999988775
|
|
| >COG1411 Uncharacterized protein related to proFAR isomerase (HisA) [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.70 E-value=0.015 Score=49.87 Aligned_cols=70 Identities=20% Similarity=0.379 Sum_probs=49.8
Q ss_pred HHHHHHHhh-hccccEEEe----cCCCCCCCCCHHHHHHHHhcCCCCEEEecCCC-hHhHHHhhc--CCEEEEeceEeec
Q psy9039 175 ITETAKAAS-FFLSDGLII----TGNATGDPADVSQLMSVKNAVDLPILIGSGVT-SDNVEHYMT--ADALIIGSHFKQG 246 (251)
Q Consensus 175 i~~~a~~a~-~~~~D~v~V----TG~~~g~~~~~~~l~~vr~~~~~PV~vG~GI~-~~~v~~~~~--ADGvIVGS~~~~~ 246 (251)
..+..+... ++-.+.++. -|++. .++.+.+..+.+.+.-||++||||. .|+..-... ++|++|||++.++
T Consensus 139 ~le~Vk~l~~~~~~~lIvLDi~aVGt~~--G~~~E~l~~~~~~s~~pVllGGGV~g~Edlel~~~~Gv~gvLvaTalh~G 216 (229)
T COG1411 139 FLETVKDLNYRRDPGLIVLDIGAVGTKS--GPDYELLTKVLELSEHPVLLGGGVGGMEDLELLLGMGVSGVLVATALHEG 216 (229)
T ss_pred HHHHHHHHhccCCCCeEEEEcccccccc--CCCHHHHHHHHHhccCceeecCCcCcHHHHHHHhcCCCceeeehhhhhcC
Confidence 334444443 344555543 34433 3468899999999999999999996 677777775 9999999998654
|
|
| >PRK07107 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=95.57 E-value=0.066 Score=52.26 Aligned_cols=31 Identities=23% Similarity=0.431 Sum_probs=26.5
Q ss_pred CCCEEEecCC-ChHhHHHhhc--CCEEEEeceEe
Q psy9039 214 DLPILIGSGV-TSDNVEHYMT--ADALIIGSHFK 244 (251)
Q Consensus 214 ~~PV~vG~GI-~~~~v~~~~~--ADGvIVGS~~~ 244 (251)
++||++-||| +..++.+.+. ||.|.+||.|-
T Consensus 352 ~~~viadgGir~~gdi~KAla~GA~~vm~G~~~a 385 (502)
T PRK07107 352 YIPICSDGGIVYDYHMTLALAMGADFIMLGRYFA 385 (502)
T ss_pred cceEEEcCCCCchhHHHHHHHcCCCeeeeChhhh
Confidence 3899999999 5788777775 99999999874
|
|
| >PRK13803 bifunctional phosphoribosylanthranilate isomerase/tryptophan synthase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=95.54 E-value=0.025 Score=56.44 Aligned_cols=49 Identities=16% Similarity=0.460 Sum_probs=36.2
Q ss_pred CCCCCCHHHHHHHHhcCCCCEEEecCCChHhHHHhhc---CC--EEEEeceEee-cC
Q psy9039 197 TGDPADVSQLMSVKNAVDLPILIGSGVTSDNVEHYMT---AD--ALIIGSHFKQ-GG 247 (251)
Q Consensus 197 ~g~~~~~~~l~~vr~~~~~PV~vG~GI~~~~v~~~~~---AD--GvIVGS~~~~-~g 247 (251)
+|..-+++.++.. ..+.|++++|||+++|+++++. .. |+=|-|.+.. .|
T Consensus 144 tG~~fdw~~~~~~--~~~~p~iLAGGL~peNV~~ai~~~~p~~~gVDvsSGvE~~pG 198 (610)
T PRK13803 144 SGKSFDWEKFYNY--NFKFPFFLSGGLSPTNFDRIINLTHPQILGIDVSSGFEDSPG 198 (610)
T ss_pred CCCccChHHhhhc--ccCCcEEEEeCCCHHHHHHHHhhhCCCceEEEccCcccCCCC
Confidence 3444467776543 2357999999999999999885 56 9989888873 35
|
|
| >KOG2335|consensus | Back alignment and domain information |
|---|
Probab=95.50 E-value=0.12 Score=47.92 Aligned_cols=73 Identities=19% Similarity=0.307 Sum_probs=56.0
Q ss_pred cHHHHHHHhhhccccEEEecCCCCC------CCCCHHHHHHHHhcCC-CCEEEecCC-ChHhHHHhhc---CCEEEEece
Q psy9039 174 DITETAKAASFFLSDGLIITGNATG------DPADVSQLMSVKNAVD-LPILIGSGV-TSDNVEHYMT---ADALIIGSH 242 (251)
Q Consensus 174 ~i~~~a~~a~~~~~D~v~VTG~~~g------~~~~~~~l~~vr~~~~-~PV~vG~GI-~~~~v~~~~~---ADGvIVGS~ 242 (251)
...+.++-.+..|++-+.|=|.... .+.+.+.++.+|+... +||++.|+| +.+.+...++ ||||.+|-.
T Consensus 156 kTvd~ak~~e~aG~~~ltVHGRtr~~kg~~~~pad~~~i~~v~~~~~~ipviaNGnI~~~~d~~~~~~~tG~dGVM~arg 235 (358)
T KOG2335|consen 156 KTVDYAKMLEDAGVSLLTVHGRTREQKGLKTGPADWEAIKAVRENVPDIPVIANGNILSLEDVERCLKYTGADGVMSARG 235 (358)
T ss_pred HHHHHHHHHHhCCCcEEEEecccHHhcCCCCCCcCHHHHHHHHHhCcCCcEEeeCCcCcHHHHHHHHHHhCCceEEecch
Confidence 3444555555679999999885332 2346789999999986 999999999 6888877774 999999987
Q ss_pred Eeec
Q psy9039 243 FKQG 246 (251)
Q Consensus 243 ~~~~ 246 (251)
+..+
T Consensus 236 lL~N 239 (358)
T KOG2335|consen 236 LLYN 239 (358)
T ss_pred hhcC
Confidence 7655
|
|
| >PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=95.47 E-value=0.046 Score=49.67 Aligned_cols=65 Identities=11% Similarity=0.130 Sum_probs=45.2
Q ss_pred HHHHHhhhccccEEEecCCCCCCCCCHHH-HHHHHh-cCCCCEEEecCCChHhHHHhhc--CCEEEEeceEe
Q psy9039 177 ETAKAASFFLSDGLIITGNATGDPADVSQ-LMSVKN-AVDLPILIGSGVTSDNVEHYMT--ADALIIGSHFK 244 (251)
Q Consensus 177 ~~a~~a~~~~~D~v~VTG~~~g~~~~~~~-l~~vr~-~~~~PV~vG~GI~~~~v~~~~~--ADGvIVGS~~~ 244 (251)
+.+..|..+|+|.+.+--.. +.++.. +..+|+ ..++|+.+.||||.+|+.++.. +|++.+||.+.
T Consensus 207 eea~eA~~~GaD~I~LDn~~---~e~l~~av~~~~~~~~~i~leAsGGIt~~ni~~ya~tGvD~Isvgsl~~ 275 (288)
T PRK07428 207 EQVQEALEYGADIIMLDNMP---VDLMQQAVQLIRQQNPRVKIEASGNITLETIRAVAETGVDYISSSAPIT 275 (288)
T ss_pred HHHHHHHHcCCCEEEECCCC---HHHHHHHHHHHHhcCCCeEEEEECCCCHHHHHHHHHcCCCEEEEchhhh
Confidence 34455556799999886211 112222 333333 3478999999999999999996 99999999764
|
|
| >TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=95.42 E-value=0.077 Score=49.87 Aligned_cols=67 Identities=24% Similarity=0.353 Sum_probs=49.8
Q ss_pred cHHHHHHHhhhccccEEEecCCCC-----CCCCCHHHHHHHHhcCCCCEEEecCC-ChHhHHHhhc--CCEEEEec
Q psy9039 174 DITETAKAASFFLSDGLIITGNAT-----GDPADVSQLMSVKNAVDLPILIGSGV-TSDNVEHYMT--ADALIIGS 241 (251)
Q Consensus 174 ~i~~~a~~a~~~~~D~v~VTG~~~-----g~~~~~~~l~~vr~~~~~PV~vG~GI-~~~~v~~~~~--ADGvIVGS 241 (251)
...+.++.+...|+|.+++.|... ....++..+.++++..++||++ +++ |.+.+.++++ ||++++|.
T Consensus 143 ~~~e~a~~l~eAGad~I~ihgrt~~q~~~sg~~~p~~l~~~i~~~~IPVI~-G~V~t~e~A~~~~~aGaDgV~~G~ 217 (369)
T TIGR01304 143 NAREIAPIVVKAGADLLVIQGTLVSAEHVSTSGEPLNLKEFIGELDVPVIA-GGVNDYTTALHLMRTGAAGVIVGP 217 (369)
T ss_pred CHHHHHHHHHHCCCCEEEEeccchhhhccCCCCCHHHHHHHHHHCCCCEEE-eCCCCHHHHHHHHHcCCCEEEECC
Confidence 456677777778999999987521 1123566777777778999998 556 8899988886 99999773
|
This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302. |
| >COG3142 CutC Uncharacterized protein involved in copper resistance [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.25 E-value=0.23 Score=43.59 Aligned_cols=53 Identities=13% Similarity=0.276 Sum_probs=41.1
Q ss_pred HHhhhccccEEEecCCCCCCCCCHHHHHHHHhcC--CCCEEEecCCChHhHHHhh
Q psy9039 180 KAASFFLSDGLIITGNATGDPADVSQLMSVKNAV--DLPILIGSGVTSDNVEHYM 232 (251)
Q Consensus 180 ~~a~~~~~D~v~VTG~~~g~~~~~~~l~~vr~~~--~~PV~vG~GI~~~~v~~~~ 232 (251)
+.....|+..+..+|.+.......+.++++-+.. .+-|++|+||+++|++++.
T Consensus 135 e~li~~Gv~RILTsGg~~sa~eg~~~l~~li~~a~gri~Im~GaGV~~~N~~~l~ 189 (241)
T COG3142 135 EQLIELGVERILTSGGKASALEGLDLLKRLIEQAKGRIIIMAGAGVRAENIAELV 189 (241)
T ss_pred HHHHHCCCcEEecCCCcCchhhhHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHH
Confidence 4444579999999998865555667777766554 5788999999999999885
|
|
| >TIGR00734 hisAF_rel hisA/hisF family protein | Back alignment and domain information |
|---|
Probab=95.19 E-value=0.07 Score=46.48 Aligned_cols=59 Identities=14% Similarity=0.220 Sum_probs=43.7
Q ss_pred ccccEEEe---cCCCCCCCCCHHHHHHHHhcCCCCEEEecCC-ChHhHHHh---hc-CCEEEEeceEeec
Q psy9039 185 FLSDGLII---TGNATGDPADVSQLMSVKNAVDLPILIGSGV-TSDNVEHY---MT-ADALIIGSHFKQG 246 (251)
Q Consensus 185 ~~~D~v~V---TG~~~g~~~~~~~l~~vr~~~~~PV~vG~GI-~~~~v~~~---~~-ADGvIVGS~~~~~ 246 (251)
+|+|-+.+ .|.. +.+.+.+.++++.+. +|+-+|||| |.++++++ +. ||=+++||...++
T Consensus 48 ~g~~~l~ivDLd~~~-~~~~n~~~i~~i~~~--~~v~vgGGirs~e~~~~~~~~l~~a~rvvigT~a~~~ 114 (221)
T TIGR00734 48 IGARFIYIADLDRIV-GLGDNFSLLSKLSKR--VELIADCGVRSPEDLETLPFTLEFASRVVVATETLDI 114 (221)
T ss_pred cCCCEEEEEEccccc-CCcchHHHHHHHHhh--CcEEEcCccCCHHHHHHHHhhhccceEEeecChhhCC
Confidence 35555433 4433 555567888888876 599999999 68888888 55 9999999987665
|
This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown. |
| >PF01180 DHO_dh: Dihydroorotate dehydrogenase; InterPro: IPR012135 Dihydroorotate dehydrogenase (DHOD), also known as dihydroorotate oxidase, catalyses the fourth step in de novo pyrimidine biosynthesis, the stereospecific oxidation of (S)-dihydroorotate to orotate, which is the only redox reaction in this pathway | Back alignment and domain information |
|---|
Probab=95.14 E-value=0.011 Score=53.33 Aligned_cols=45 Identities=18% Similarity=0.384 Sum_probs=37.8
Q ss_pred HHHHHHHHhcCC--CCEEEecCC-ChHhHHHhhc--CCEEEEeceEeecC
Q psy9039 203 VSQLMSVKNAVD--LPILIGSGV-TSDNVEHYMT--ADALIIGSHFKQGG 247 (251)
Q Consensus 203 ~~~l~~vr~~~~--~PV~vG~GI-~~~~v~~~~~--ADGvIVGS~~~~~g 247 (251)
++.+.++++.++ +||+..||| |.+++.+++. ||.|.|+|++...|
T Consensus 231 L~~V~~~~~~~~~~i~Iig~GGI~s~~da~e~l~aGA~~Vqv~Sal~~~G 280 (295)
T PF01180_consen 231 LRWVRELRKALGQDIPIIGVGGIHSGEDAIEFLMAGASAVQVCSALIYRG 280 (295)
T ss_dssp HHHHHHHHHHTTTSSEEEEESS--SHHHHHHHHHHTESEEEESHHHHHHG
T ss_pred HHHHHHHHhccccceEEEEeCCcCCHHHHHHHHHhCCCHheechhhhhcC
Confidence 456778888887 999999999 7999999985 99999999996544
|
DHODs can be divided into two mains classes: class 1 cytosolic enzymes found primarily in Gram-positive bacteria, and class 2 membrane-associated enzymes found primarily in eukaryotic mitochondria and Gram-negative bacteria []. The class 1 DHODs can be further divided into subclasses 1A and 1B, which differ in their structural organisation and use of electron acceptors. The 1A enzyme is a homodimer of two PyrD subunits where each subunit forms a TIM barrel fold with a bound FMN cofactor located near the top of the barrel []. Fumarate is the natural electron acceptor for this enzyme. The 1B enzyme, in contrast is a heterotetramer composed of a central, FMN-containing, PyrD homodimer resembling the 1A homodimer, and two additional PyrK subunits which contain FAD and a 2Fe-2S cluster []. These additional groups allow the enzyme to use NAD(+) as its natural electron acceptor. The class 2 membrane-associated enzymes are monomers which have the FMN-containing TIM barrel domain found in the class 1 PyrD subunit, and an additional N-terminal alpha helical domain [, ]. These enzymes use respiratory quinones as the physiological electron acceptor. This entry represents the FMN-binding subunit common to all classes of dihydroorotate dehydrogenase.; GO: 0004152 dihydroorotate dehydrogenase activity, 0006222 UMP biosynthetic process, 0055114 oxidation-reduction process; PDB: 3GYE_A 3GZ3_A 3MHU_B 3MJY_A 3TQ0_A 2B4G_C 1EP3_A 1EP2_A 1EP1_A 3I6R_A .... |
| >PRK11613 folP dihydropteroate synthase; Provisional | Back alignment and domain information |
|---|
Probab=95.07 E-value=0.21 Score=45.23 Aligned_cols=88 Identities=14% Similarity=0.099 Sum_probs=52.7
Q ss_pred CCCCcchHHHHHHHHHhhCCCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHH---HHHHHHHhCCCCccEEEEEe
Q psy9039 24 GPEITANMTRLCAEIRKVLPPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTR---LCAEIRKVLPPSVPVGVQIL 100 (251)
Q Consensus 24 ~P~~~~~~~~i~~~a~~~a~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~---~i~~vr~~~~~~~P~Gvn~~ 100 (251)
|-.|+++.-.=.+.+++.++.+++.|+ |.|-|-=+-.-|.+.++ + ...-+.| +++++++..+ +|+-+.+|
T Consensus 26 DSFsdgg~~~~~~~a~~~a~~~~~~GA-dIIDIGgeSTrPg~~~v--~--~eeE~~Rv~pvI~~l~~~~~--~~ISIDT~ 98 (282)
T PRK11613 26 DSFSDGGTHNSLIDAVKHANLMINAGA-TIIDVGGESTRPGAAEV--S--VEEELDRVIPVVEAIAQRFE--VWISVDTS 98 (282)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCCC-cEEEECCCCCCCCCCCC--C--HHHHHHHHHHHHHHHHhcCC--CeEEEECC
Confidence 334454322223445566667788999 99987322233555442 2 2223444 6688887666 79999998
Q ss_pred eCChHHHHHHHHHcCccceec
Q psy9039 101 SGCNKAALATAQAAGLDFIRA 121 (251)
Q Consensus 101 ~N~~~~~~~ia~a~g~~Fir~ 121 (251)
... + +..|...|++.+-+
T Consensus 99 ~~~-v--a~~AL~~GadiIND 116 (282)
T PRK11613 99 KPE-V--IRESAKAGAHIIND 116 (282)
T ss_pred CHH-H--HHHHHHcCCCEEEE
Confidence 643 3 44455568888764
|
|
| >PRK08649 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=95.06 E-value=0.11 Score=48.87 Aligned_cols=66 Identities=21% Similarity=0.307 Sum_probs=47.5
Q ss_pred cHHHHHHHhhhccccEEEecCCCC----CCCC-CHHHHHHHHhcCCCCEEEecCC-ChHhHHHhhc--CCEEEEe
Q psy9039 174 DITETAKAASFFLSDGLIITGNAT----GDPA-DVSQLMSVKNAVDLPILIGSGV-TSDNVEHYMT--ADALIIG 240 (251)
Q Consensus 174 ~i~~~a~~a~~~~~D~v~VTG~~~----g~~~-~~~~l~~vr~~~~~PV~vG~GI-~~~~v~~~~~--ADGvIVG 240 (251)
...+.++.+...|+|.+++.|... +... +...+.++++..++||++ ++| |++.+.++++ ||++.||
T Consensus 142 ~~~e~a~~l~eaGvd~I~vhgrt~~~~h~~~~~~~~~i~~~ik~~~ipVIa-G~V~t~e~A~~l~~aGAD~V~VG 215 (368)
T PRK08649 142 RAQELAPTVVEAGVDLFVIQGTVVSAEHVSKEGEPLNLKEFIYELDVPVIV-GGCVTYTTALHLMRTGAAGVLVG 215 (368)
T ss_pred CHHHHHHHHHHCCCCEEEEeccchhhhccCCcCCHHHHHHHHHHCCCCEEE-eCCCCHHHHHHHHHcCCCEEEEC
Confidence 345666666667999999977421 1222 465666666667999988 446 8999998886 9999998
|
|
| >cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport | Back alignment and domain information |
|---|
Probab=95.01 E-value=0.058 Score=48.55 Aligned_cols=65 Identities=20% Similarity=0.277 Sum_probs=44.3
Q ss_pred cHHHHHHHhhhccccEEEecCCCCCCCCCH-HHHHHHHhc-CCCCEEEecCCChHhHHHhhc--CCEEEEece
Q psy9039 174 DITETAKAASFFLSDGLIITGNATGDPADV-SQLMSVKNA-VDLPILIGSGVTSDNVEHYMT--ADALIIGSH 242 (251)
Q Consensus 174 ~i~~~a~~a~~~~~D~v~VTG~~~g~~~~~-~~l~~vr~~-~~~PV~vG~GI~~~~v~~~~~--ADGvIVGS~ 242 (251)
+.++ +..|...|+|++.+--.. +.+. +.++.+++. .++|+++-||||++|+.++.+ +|++++|+-
T Consensus 192 t~ee-a~~A~~~gaD~I~ld~~~---p~~l~~~~~~~~~~~~~i~i~AsGGI~~~ni~~~~~~Gvd~I~vsai 260 (272)
T cd01573 192 SLEE-ALAAAEAGADILQLDKFS---PEELAELVPKLRSLAPPVLLAAAGGINIENAAAYAAAGADILVTSAP 260 (272)
T ss_pred CHHH-HHHHHHcCCCEEEECCCC---HHHHHHHHHHHhccCCCceEEEECCCCHHHHHHHHHcCCcEEEEChh
Confidence 4444 444555799998775321 2233 334445554 379999999999999999997 999955553
|
In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. |
| >TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=94.91 E-value=0.054 Score=52.51 Aligned_cols=68 Identities=16% Similarity=0.198 Sum_probs=44.9
Q ss_pred HHHHHHHhhhccccEEEecCC---------CCCC-CCCHHHHH----HHHhcCCCCEEEecCC-ChHhHHHhhc--CCEE
Q psy9039 175 ITETAKAASFFLSDGLIITGN---------ATGD-PADVSQLM----SVKNAVDLPILIGSGV-TSDNVEHYMT--ADAL 237 (251)
Q Consensus 175 i~~~a~~a~~~~~D~v~VTG~---------~~g~-~~~~~~l~----~vr~~~~~PV~vG~GI-~~~~v~~~~~--ADGv 237 (251)
..+.++.+...|+|++-|.+. -++. .+...-+. ..++. ++||++-||| ++.++.+.+. ||.|
T Consensus 276 t~~~~~~l~~~G~d~i~vg~g~Gs~~ttr~~~~~g~~~~~a~~~~~~~~~~~-~~~viadGgi~~~~di~kala~GA~~v 354 (475)
T TIGR01303 276 SAEGVRDLLEAGANIIKVGVGPGAMCTTRMMTGVGRPQFSAVLECAAEARKL-GGHVWADGGVRHPRDVALALAAGASNV 354 (475)
T ss_pred CHHHHHHHHHhCCCEEEECCcCCccccCccccCCCCchHHHHHHHHHHHHHc-CCcEEEeCCCCCHHHHHHHHHcCCCEE
Confidence 344556665679999864331 2221 12222222 22333 7999999999 7999888886 9999
Q ss_pred EEeceE
Q psy9039 238 IIGSHF 243 (251)
Q Consensus 238 IVGS~~ 243 (251)
.+||.|
T Consensus 355 m~g~~~ 360 (475)
T TIGR01303 355 MVGSWF 360 (475)
T ss_pred eechhh
Confidence 999998
|
This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302. |
| >COG0113 HemB Delta-aminolevulinic acid dehydratase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=94.89 E-value=0.7 Score=42.21 Aligned_cols=159 Identities=20% Similarity=0.232 Sum_probs=83.9
Q ss_pred HHHHHhhCCCCcCCCCccEEEEeecCCCCcc---ccC------CCchHHHHHHHHHHHHHHHhCCCCccEEEEE------
Q psy9039 35 CAEIRKVLPPSVPVGVQHGVIVENMHDVPYV---LEA------ESGPEITANMTRLCAEIRKVLPPSVPVGVQI------ 99 (251)
Q Consensus 35 ~~~a~~~a~~l~~~Gv~D~i~ieN~~~~Pf~---~p~------~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~------ 99 (251)
++.++++++.+.+.|+ -+|++ ||+|=. |.. .+|. ..+.++.+|+.+++. ++++
T Consensus 60 ~d~l~~~~~~~~~lGi-~av~L---Fgvp~~~~Kd~~gs~A~~~~gi-----vqravr~ik~~~p~l---~iitDvcLce 127 (330)
T COG0113 60 LDRLVEEAEELVDLGI-PAVIL---FGVPDDSKKDETGSEAYDPDGI-----VQRAVRAIKEAFPEL---VVITDVCLCE 127 (330)
T ss_pred HHHHHHHHHHHHhcCC-CEEEE---eCCCcccccCcccccccCCCCh-----HHHHHHHHHHhCCCe---EEEeeecccC
Confidence 3444666677888999 99986 888832 110 0222 235677888877632 3322
Q ss_pred ---------------eeCCh----HHHHHHHHH-cCccceecccccccccCCCceeecCcchhHHHHHhcCCCcchhhhh
Q psy9039 100 ---------------LSGCN----KAALATAQA-AGLDFIRAESFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTD 159 (251)
Q Consensus 100 ---------------~~N~~----~~~~~ia~a-~g~~Fir~~~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~ 159 (251)
..|+. ....++.+| .|++++. +++.+.+....+.+.-+..|-.++.+++.
T Consensus 128 yT~HGHcGil~~~~~V~ND~Tle~l~k~Avs~AeAGAdivA----------PSdMMDGrV~aIR~aLd~ag~~~v~IMsY 197 (330)
T COG0113 128 YTDHGHCGILDDGGYVDNDETLEILAKQAVSQAEAGADIVA----------PSDMMDGRVGAIREALDEAGFIDVPIMSY 197 (330)
T ss_pred CcCCCccccccCCCeecchHHHHHHHHHHHHHHHcCCCeec----------ccccccchHHHHHHHHHHcCCCcceeeeh
Confidence 22331 112333333 5566654 44555555444444444445455555442
Q ss_pred hHhhc------------cCCC-------CCCcccHHHHHHHhh---hccccEEEecCCCCCCCCCHHHHHHHHhcCCCCE
Q psy9039 160 IKKKH------------SSHA-------ITADVDITETAKAAS---FFLSDGLIITGNATGDPADVSQLMSVKNAVDLPI 217 (251)
Q Consensus 160 v~~k~------------~~~~-------~~~~~~i~~~a~~a~---~~~~D~v~VTG~~~g~~~~~~~l~~vr~~~~~PV 217 (251)
-++-+ |.|. ..+.....+..+.++ .-|+|.+.|- .+ -+=++.++++|+.+++|+
T Consensus 198 saKyASafYGPFRdAa~Sap~~gdrktYQmDpaN~~EAlrE~~lD~~EGAD~lMVK---Pa-l~YLDIi~~vk~~~~lP~ 273 (330)
T COG0113 198 SAKYASAFYGPFRDAAGSAPKFGDRKTYQMDPANRREALREIELDIEEGADILMVK---PA-LPYLDIIRRVKEEFNLPV 273 (330)
T ss_pred hHHHhhhccccHHHHhhcccccCCcceeccCCcCHHHHHHHHHhhHhcCCcEEEEc---CC-chHHHHHHHHHHhcCCCe
Confidence 11110 1111 112223334444444 2499999883 11 122578999999999998
Q ss_pred EE
Q psy9039 218 LI 219 (251)
Q Consensus 218 ~v 219 (251)
++
T Consensus 274 ~A 275 (330)
T COG0113 274 AA 275 (330)
T ss_pred EE
Confidence 75
|
|
| >cd00311 TIM Triosephosphate isomerase (TIM) is a glycolytic enzyme that catalyzes the interconversion of dihydroxyacetone phosphate and D-glyceraldehyde-3-phosphate | Back alignment and domain information |
|---|
Probab=94.83 E-value=0.023 Score=50.39 Aligned_cols=32 Identities=22% Similarity=0.477 Sum_probs=28.7
Q ss_pred CCCEEEecCCChHhHHHhhc---CCEEEEeceEee
Q psy9039 214 DLPILIGSGVTSDNVEHYMT---ADALIIGSHFKQ 245 (251)
Q Consensus 214 ~~PV~vG~GI~~~~v~~~~~---ADGvIVGS~~~~ 245 (251)
++||+-||+|+++|+++++. .||+-||++-.+
T Consensus 199 ~~~IlYGGSV~~~N~~~l~~~~~vDG~LVG~Asl~ 233 (242)
T cd00311 199 KVRILYGGSVNPENAAELLAQPDIDGVLVGGASLK 233 (242)
T ss_pred ceeEEECCCCCHHHHHHHhcCCCCCEEEeehHhhC
Confidence 48999999999999999985 899999998654
|
The reaction is very efficient and requires neither cofactors nor metal ions. TIM, usually homodimeric, but in some organisms tetrameric, is ubiqitous and conserved in function across eukaryotes, bacteria and archaea. |
| >cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway | Back alignment and domain information |
|---|
Probab=94.79 E-value=0.065 Score=47.82 Aligned_cols=154 Identities=13% Similarity=0.165 Sum_probs=83.2
Q ss_pred CcCCCCccEEEEe-----ecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCcc-EEEEE----eeCChHHHHHHHHHc
Q psy9039 45 SVPVGVQHGVIVE-----NMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVP-VGVQI----LSGCNKAALATAQAA 114 (251)
Q Consensus 45 l~~~Gv~D~i~ie-----N~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P-~Gvn~----~~N~~~~~~~ia~a~ 114 (251)
++++|+ |+|.+- +.+|.| | -++++..-|..-++.+++..+ .| +.+.+ |.|++.....-+
T Consensus 28 ~e~aG~-d~i~vGds~~~~~lG~p--D---t~~vtl~em~~~~~~V~r~~~--~p~viaD~~fg~y~~~~~~av~~a--- 96 (254)
T cd06557 28 ADEAGV-DVILVGDSLGMVVLGYD--S---TLPVTLDEMIYHTRAVRRGAP--RALVVADMPFGSYQTSPEQALRNA--- 96 (254)
T ss_pred HHHcCC-CEEEECHHHHHHHcCCC--C---CCCcCHHHHHHHHHHHHhcCC--CCeEEEeCCCCcccCCHHHHHHHH---
Confidence 467799 999753 123332 3 368888889999999998888 68 44433 444321111111
Q ss_pred CccceecccccccccCCCceeecCcchhHHHHHhcCCCcchhhhhh--HhhccCCC------CCCcccHHHHHHHhh-h-
Q psy9039 115 GLDFIRAESFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDI--KKKHSSHA------ITADVDITETAKAAS-F- 184 (251)
Q Consensus 115 g~~Fir~~~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v--~~k~~~~~------~~~~~~i~~~a~~a~-~- 184 (251)
.++++ ..|.+|+-..|..+..+.-+.+-...+.+++.+ ++++...+ .-++.+.+++.+.+. +
T Consensus 97 -~r~~~-------~aGa~aVkiEd~~~~~~~I~al~~agipV~gHiGL~pq~~~~~gg~~~~grt~~~a~~~i~ra~a~~ 168 (254)
T cd06557 97 -ARLMK-------EAGADAVKLEGGAEVAETIRALVDAGIPVMGHIGLTPQSVNQLGGYKVQGKTEEEAERLLEDALALE 168 (254)
T ss_pred -HHHHH-------HhCCeEEEEcCcHHHHHHHHHHHHcCCCeeccccccceeeeccCCceeccCCHHHHHHHHHHHHHHH
Confidence 12222 134555555554333333333323355554322 33321110 001233455555554 2
Q ss_pred -ccccEEEecCCCCCCCCCHHHHHHHHhcCCCCEE-EecCC
Q psy9039 185 -FLSDGLIITGNATGDPADVSQLMSVKNAVDLPIL-IGSGV 223 (251)
Q Consensus 185 -~~~D~v~VTG~~~g~~~~~~~l~~vr~~~~~PV~-vG~GI 223 (251)
.|||++.+-+.. .++.+++.+.+++|+| +|.|-
T Consensus 169 ~AGA~~i~lE~v~------~~~~~~i~~~v~iP~igiGaG~ 203 (254)
T cd06557 169 EAGAFALVLECVP------AELAKEITEALSIPTIGIGAGP 203 (254)
T ss_pred HCCCCEEEEcCCC------HHHHHHHHHhCCCCEEEeccCC
Confidence 599999997662 2578888889999988 44444
|
Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis. |
| >PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase | Back alignment and domain information |
|---|
Probab=94.75 E-value=0.015 Score=54.13 Aligned_cols=69 Identities=25% Similarity=0.337 Sum_probs=42.3
Q ss_pred HHHHHHhhhccccEEEe---------cCCCCCC-CCCHHH---HHHHHhcCCCCEEEecCC-ChHhHHHhhc--CCEEEE
Q psy9039 176 TETAKAASFFLSDGLII---------TGNATGD-PADVSQ---LMSVKNAVDLPILIGSGV-TSDNVEHYMT--ADALII 239 (251)
Q Consensus 176 ~~~a~~a~~~~~D~v~V---------TG~~~g~-~~~~~~---l~~vr~~~~~PV~vG~GI-~~~~v~~~~~--ADGvIV 239 (251)
.+.++.....|+|++-| |-..+|. -+.+.. ..++++...+|||+-||| ++-++.+.+. ||.|.+
T Consensus 160 ~e~a~~L~~aGad~vkVGiGpGsiCtTr~v~GvG~PQ~tAv~~~a~~a~~~~v~iIADGGi~~sGDi~KAla~GAd~VMl 239 (352)
T PF00478_consen 160 YEGAKDLIDAGADAVKVGIGPGSICTTREVTGVGVPQLTAVYECAEAARDYGVPIIADGGIRTSGDIVKALAAGADAVML 239 (352)
T ss_dssp HHHHHHHHHTT-SEEEESSSSSTTBHHHHHHSBSCTHHHHHHHHHHHHHCTTSEEEEESS-SSHHHHHHHHHTT-SEEEE
T ss_pred HHHHHHHHHcCCCEEEEeccCCcccccccccccCCcHHHHHHHHHHHhhhccCceeecCCcCcccceeeeeeecccceee
Confidence 44455544568999855 1112221 123333 444555558999999999 6888887775 999999
Q ss_pred eceEe
Q psy9039 240 GSHFK 244 (251)
Q Consensus 240 GS~~~ 244 (251)
||.|-
T Consensus 240 G~llA 244 (352)
T PF00478_consen 240 GSLLA 244 (352)
T ss_dssp STTTT
T ss_pred chhhc
Confidence 99763
|
These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. |
| >PRK14565 triosephosphate isomerase; Provisional | Back alignment and domain information |
|---|
Probab=94.74 E-value=0.031 Score=49.34 Aligned_cols=40 Identities=15% Similarity=0.307 Sum_probs=33.5
Q ss_pred HHHHHhcC-CCCEEEecCCChHhHHHhhc---CCEEEEeceEee
Q psy9039 206 LMSVKNAV-DLPILIGSGVTSDNVEHYMT---ADALIIGSHFKQ 245 (251)
Q Consensus 206 l~~vr~~~-~~PV~vG~GI~~~~v~~~~~---ADGvIVGS~~~~ 245 (251)
.+.+|+.. ++||+.||+|+++|+.++++ .||+.||++-.+
T Consensus 180 ~~~Ir~~~~~~~IlYGGSV~~~N~~~l~~~~~iDG~LvG~asl~ 223 (237)
T PRK14565 180 FEIIRSYDSKSHIIYGGSVNQENIRDLKSINQLSGVLVGSASLD 223 (237)
T ss_pred HHHHHHhCCCceEEEcCccCHhhHHHHhcCCCCCEEEEechhhc
Confidence 44566654 68999999999999999985 999999998654
|
|
| >TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=94.72 E-value=0.089 Score=51.04 Aligned_cols=63 Identities=25% Similarity=0.360 Sum_probs=49.4
Q ss_pred HHHHHhhhccccEEEecCCCCCCCCC-HHHHHHHHhcC-CCCEEEecCCChHhHHHhhc--CCEEEEe
Q psy9039 177 ETAKAASFFLSDGLIITGNATGDPAD-VSQLMSVKNAV-DLPILIGSGVTSDNVEHYMT--ADALIIG 240 (251)
Q Consensus 177 ~~a~~a~~~~~D~v~VTG~~~g~~~~-~~~l~~vr~~~-~~PV~vG~GI~~~~v~~~~~--ADGvIVG 240 (251)
+.++.....|+|.+++--++ |.+.. .+.++++|+.. ++||++|++.|.+.+.++.+ ||++-||
T Consensus 228 ~ra~~Lv~aGVd~i~~D~a~-g~~~~~~~~i~~i~~~~~~~~vi~g~~~t~~~~~~l~~~G~d~i~vg 294 (475)
T TIGR01303 228 GKAKALLDAGVDVLVIDTAH-GHQVKMISAIKAVRALDLGVPIVAGNVVSAEGVRDLLEAGANIIKVG 294 (475)
T ss_pred HHHHHHHHhCCCEEEEeCCC-CCcHHHHHHHHHHHHHCCCCeEEEeccCCHHHHHHHHHhCCCEEEEC
Confidence 33333334689999987776 55544 47799999875 89999999999999999996 9999876
|
This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302. |
| >cd00739 DHPS DHPS subgroup of Pterin binding enzymes | Back alignment and domain information |
|---|
Probab=94.72 E-value=0.92 Score=40.44 Aligned_cols=98 Identities=17% Similarity=0.136 Sum_probs=55.0
Q ss_pred HHHHhhCCCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHHHHHHHHcC
Q psy9039 36 AEIRKVLPPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQAAG 115 (251)
Q Consensus 36 ~~a~~~a~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g 115 (251)
+.+++.++.+.+.|+ |.|-|-=+-.-|..+++ +..+-..-+..+++.+++.++ +|+.+..+... .+..|...|
T Consensus 24 ~~~~~~a~~~~~~GA-diIDIG~~st~p~~~~i-~~~~E~~rl~~~v~~i~~~~~--~plSIDT~~~~---v~e~al~~G 96 (257)
T cd00739 24 DKAVAHAEKMIAEGA-DIIDIGGESTRPGADPV-SVEEELERVIPVLEALRGELD--VLISVDTFRAE---VARAALEAG 96 (257)
T ss_pred HHHHHHHHHHHHCCC-CEEEECCCcCCCCCCCC-CHHHHHHHHHHHHHHHHhcCC--CcEEEeCCCHH---HHHHHHHhC
Confidence 344444555678899 99976111113555543 122222233346788887777 79999998643 344444557
Q ss_pred ccceecccccccccCCCceeecCcchhHHHHHhcCC
Q psy9039 116 LDFIRAESFVFGHMADEGLMNAQAGPLLRYRKQIGA 151 (251)
Q Consensus 116 ~~Fir~~~~~~~~~~~~Gli~~da~e~~~~r~~l~~ 151 (251)
++.+-. ..|. .-+ .+..+..+++++
T Consensus 97 ~~iINd---------isg~-~~~-~~~~~l~~~~~~ 121 (257)
T cd00739 97 ADIIND---------VSGG-SDD-PAMLEVAAEYGA 121 (257)
T ss_pred CCEEEe---------CCCC-CCC-hHHHHHHHHcCC
Confidence 676653 1121 112 456677777776
|
DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. |
| >PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=94.70 E-value=0.092 Score=47.35 Aligned_cols=64 Identities=22% Similarity=0.218 Sum_probs=45.9
Q ss_pred HHHHHHHhhhccccEEEecCCCCCCCCCHHHHHHHHhc-----CCCCEEEecCCChHhHHHhhc--CCEEEEeceEe
Q psy9039 175 ITETAKAASFFLSDGLIITGNATGDPADVSQLMSVKNA-----VDLPILIGSGVTSDNVEHYMT--ADALIIGSHFK 244 (251)
Q Consensus 175 i~~~a~~a~~~~~D~v~VTG~~~g~~~~~~~l~~vr~~-----~~~PV~vG~GI~~~~v~~~~~--ADGvIVGS~~~ 244 (251)
..+.+..|...|+|.+-... .+.+.++++.+. .++.+.+.||||++|++++.. +|.+.+||.+.
T Consensus 191 tleea~~A~~~GaDiI~LDn------~~~e~l~~~v~~~~~~~~~~~ieAsGgIt~~ni~~ya~~GvD~IsvG~l~~ 261 (273)
T PRK05848 191 SLEEAKNAMNAGADIVMCDN------MSVEEIKEVVAYRNANYPHVLLEASGNITLENINAYAKSGVDAISSGSLIH 261 (273)
T ss_pred CHHHHHHHHHcCCCEEEECC------CCHHHHHHHHHHhhccCCCeEEEEECCCCHHHHHHHHHcCCCEEEeChhhc
Confidence 34445666667999887543 244555543332 245699999999999999997 99999999764
|
|
| >PF01070 FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR000262 A number of oxidoreductases that act on alpha-hydroxy acids and which are FMN-containing flavoproteins have been shown [, , ] to be structurally related | Back alignment and domain information |
|---|
Probab=94.58 E-value=0.039 Score=51.54 Aligned_cols=68 Identities=31% Similarity=0.448 Sum_probs=47.9
Q ss_pred HHHHHhhhccccEEEecCCC--C--CCCCCHHHHHHHHhcC--CCCEEEecCC-ChHhHHHhhc--CCEEEEeceEe
Q psy9039 177 ETAKAASFFLSDGLIITGNA--T--GDPADVSQLMSVKNAV--DLPILIGSGV-TSDNVEHYMT--ADALIIGSHFK 244 (251)
Q Consensus 177 ~~a~~a~~~~~D~v~VTG~~--~--g~~~~~~~l~~vr~~~--~~PV~vG~GI-~~~~v~~~~~--ADGvIVGS~~~ 244 (251)
+-++.+...|+|++.|+|.. . ...+..+.|.++++.+ ++||++-||| +..++.+.+. ||+|-+|-.|.
T Consensus 237 ~da~~~~~~G~~~i~vs~hGGr~~d~~~~~~~~L~~i~~~~~~~~~i~~dgGir~g~Dv~kalaLGA~~v~igr~~l 313 (356)
T PF01070_consen 237 EDAKRAVDAGVDGIDVSNHGGRQLDWGPPTIDALPEIRAAVGDDIPIIADGGIRRGLDVAKALALGADAVGIGRPFL 313 (356)
T ss_dssp HHHHHHHHTT-SEEEEESGTGTSSTTS-BHHHHHHHHHHHHTTSSEEEEESS--SHHHHHHHHHTT-SEEEESHHHH
T ss_pred HHHHHHHhcCCCEEEecCCCcccCccccccccccHHHHhhhcCCeeEEEeCCCCCHHHHHHHHHcCCCeEEEccHHH
Confidence 33455556799999999752 1 1234467788888865 6999999999 7888888876 99999997654
|
These enzymes are: Lactate dehydrogenase (1.1.2.3 from EC), which consists of a dehydrogenase domain and a haem-binding domain called cytochrome b2 and which catalyses the conversion of lactate into pyruvate. Glycolate oxidase (1.1.3.15 from EC) ((S)-2-hydroxy-acid oxidase), a peroxisomal enzyme that catalyses the conversion of glycolate and oxygen to glyoxylate and hydrogen peroxide. Long chain alpha-hydroxy acid oxidase from rat (1.1.3.15 from EC), a peroxisomal enzyme. Lactate 2-monooxygenase (1.13.12.4 from EC) (lactate oxidase) from Mycobacterium smegmatis, which catalyses the conversion of lactate and oxygen to acetate, carbon dioxide and water. (S)-mandelate dehydrogenase from Pseudomonas putida (gene mdlB), which catalyses the reduction of (S)-mandelate to benzoylformate. The first step in the reaction mechanism of these enzymes is the abstraction of the proton from the alpha-carbon of the substrate producing a carbanion which can subsequently attach to the N5 atom of FMN. A conserved histidine has been shown [] to be involved in the removal of the proton. The region around this active site residue is highly conserved and contains an arginine residue which is involved in substrate binding.; GO: 0016491 oxidoreductase activity; PDB: 1VCG_C 1VCF_A 1P0N_B 1P0K_A 2A85_A 2A7P_A 3GIY_A 2A7N_A 3DH7_A 2RDU_A .... |
| >PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=94.54 E-value=0.045 Score=50.62 Aligned_cols=69 Identities=17% Similarity=0.199 Sum_probs=47.2
Q ss_pred HHHHHHhhhccccEE---------EecCCCCCCCC-CHHHHHHHH---hcCCCCEEEecCC-ChHhHHHhhc--CCEEEE
Q psy9039 176 TETAKAASFFLSDGL---------IITGNATGDPA-DVSQLMSVK---NAVDLPILIGSGV-TSDNVEHYMT--ADALII 239 (251)
Q Consensus 176 ~~~a~~a~~~~~D~v---------~VTG~~~g~~~-~~~~l~~vr---~~~~~PV~vG~GI-~~~~v~~~~~--ADGvIV 239 (251)
.+.++.....|||++ |+|-..+|... .+..+.++. ...++|||+-||| ++-++.+.+. ||.|.+
T Consensus 162 ~e~a~~Li~aGAD~vKVGIGpGSiCtTr~vtGvG~PQltAV~~~a~~a~~~gvpiIADGGi~~sGDI~KAlaaGAd~VMl 241 (346)
T PRK05096 162 GEMVEELILSGADIVKVGIGPGSVCTTRVKTGVGYPQLSAVIECADAAHGLGGQIVSDGGCTVPGDVAKAFGGGADFVML 241 (346)
T ss_pred HHHHHHHHHcCCCEEEEcccCCccccCccccccChhHHHHHHHHHHHHHHcCCCEEecCCcccccHHHHHHHcCCCEEEe
Confidence 444555555688887 56666665433 344444433 3357999999999 5788777775 999999
Q ss_pred eceEe
Q psy9039 240 GSHFK 244 (251)
Q Consensus 240 GS~~~ 244 (251)
||-|-
T Consensus 242 GsllA 246 (346)
T PRK05096 242 GGMLA 246 (346)
T ss_pred Chhhc
Confidence 99873
|
|
| >PLN02979 glycolate oxidase | Back alignment and domain information |
|---|
Probab=94.53 E-value=0.68 Score=43.44 Aligned_cols=169 Identities=11% Similarity=0.193 Sum_probs=88.7
Q ss_pred ecCCCCccccCCCchHHHHHHHH------HHHHHHHhCCCCccEEEEEeeCChHHHHHHHHHcCccceecccccccccCC
Q psy9039 58 NMHDVPYVLEAESGPEITANMTR------LCAEIRKVLPPSVPVGVQILSGCNKAALATAQAAGLDFIRAESFVFGHMAD 131 (251)
Q Consensus 58 N~~~~Pf~~p~~~gp~i~aa~~~------~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g~~Fir~~~~~~~~~~~ 131 (251)
+.+|.+|+-|+-..|.-.+.+.. +++.- +... +|+.+..+.+.+.+.++-+ .-+-.|.+. ....+
T Consensus 62 ~llG~~~~~P~~iAP~g~~~l~hpdgE~a~ARAA-~~ag--i~~~lSt~ss~slEeIa~a-~~~~~wfQL-----Y~~~D 132 (366)
T PLN02979 62 TVLGFKISMPIMVAPTAMQKMAHPDGEYATARAA-SAAG--TIMTLSSWATSSVEEVAST-GPGIRFFQL-----YVYKN 132 (366)
T ss_pred EECCcccCccceecHHHHHhhCCCChHHHHHHHH-HHcC--CCeeeccCcCCCHHHHHhc-cCCCeEEEE-----eecCC
Confidence 35789999998778877665531 22222 2345 6999988877666555432 122345553 11112
Q ss_pred CceeecCcchhHHHHHhcCCCcchhhhh----------hHhhccCCCCCCcccHHHHHHH--hhhccccEEEec---CCC
Q psy9039 132 EGLMNAQAGPLLRYRKQIGADNVLVFTD----------IKKKHSSHAITADVDITETAKA--ASFFLSDGLIIT---GNA 196 (251)
Q Consensus 132 ~Gli~~da~e~~~~r~~l~~~~i~i~a~----------v~~k~~~~~~~~~~~i~~~a~~--a~~~~~D~v~VT---G~~ 196 (251)
.++ ..++++..++.|..-+-+=-| +......|. ..+....... ........-.+. +..
T Consensus 133 r~~----~~~ll~RA~~aG~~AlvlTVD~pv~G~R~rd~rn~~~~p~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (366)
T PLN02979 133 RNV----VEQLVRRAERAGFKAIALTVDTPRLGRRESDIKNRFTLPP---NLTLKNFEGLDLGKMDEANDSGLASYVAGQ 205 (366)
T ss_pred HHH----HHHHHHHHHHcCCCEEEEEecCCCCCCchhhhccCCCCCc---ccchhhhhhccccCCCcccchhHHHHHhhc
Confidence 221 455677777777633322111 111111110 0011111000 000000000000 001
Q ss_pred CCCCCCHHHHHHHHhcCCCCEEEecCCChHhHHHhhc--CCEEEEece
Q psy9039 197 TGDPADVSQLMSVKNAVDLPILIGSGVTSDNVEHYMT--ADALIIGSH 242 (251)
Q Consensus 197 ~g~~~~~~~l~~vr~~~~~PV~vG~GI~~~~v~~~~~--ADGvIVGS~ 242 (251)
.....+++.|+.+|+.+++||++.+=.+++++..+.+ +||++|+..
T Consensus 206 ~~~~ltW~dl~wlr~~~~~PvivKgV~~~~dA~~a~~~Gvd~I~Vsnh 253 (366)
T PLN02979 206 IDRTLSWKDVQWLQTITKLPILVKGVLTGEDARIAIQAGAAGIIVSNH 253 (366)
T ss_pred CCCCCCHHHHHHHHhccCCCEEeecCCCHHHHHHHHhcCCCEEEECCC
Confidence 1123357999999999999999987779999998886 999999754
|
|
| >cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain | Back alignment and domain information |
|---|
Probab=94.52 E-value=0.15 Score=40.01 Aligned_cols=71 Identities=11% Similarity=0.033 Sum_probs=50.7
Q ss_pred CCcccHHHHHHHhhhccccEEEecCCCCCCCCCH-HHHHHHHhc-C-CCCEEEecCCChHhHHHhhc--CCEEEEe
Q psy9039 170 TADVDITETAKAASFFLSDGLIITGNATGDPADV-SQLMSVKNA-V-DLPILIGSGVTSDNVEHYMT--ADALIIG 240 (251)
Q Consensus 170 ~~~~~i~~~a~~a~~~~~D~v~VTG~~~g~~~~~-~~l~~vr~~-~-~~PV~vG~GI~~~~v~~~~~--ADGvIVG 240 (251)
....+.+++.+.+....+|.+++++......+.. +.++++|+. . ++++++||...++...++.+ .|++|=+
T Consensus 34 G~~vp~e~~~~~a~~~~~d~V~iS~~~~~~~~~~~~~~~~L~~~~~~~i~i~~GG~~~~~~~~~~~~~G~d~~~~~ 109 (122)
T cd02071 34 GLRQTPEEIVEAAIQEDVDVIGLSSLSGGHMTLFPEVIELLRELGAGDILVVGGGIIPPEDYELLKEMGVAEIFGP 109 (122)
T ss_pred CCCCCHHHHHHHHHHcCCCEEEEcccchhhHHHHHHHHHHHHhcCCCCCEEEEECCCCHHHHHHHHHCCCCEEECC
Confidence 4456778888888878999999999865444444 556778876 3 57788888776666776664 7777643
|
This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation. |
| >TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=94.47 E-value=0.095 Score=50.41 Aligned_cols=60 Identities=23% Similarity=0.360 Sum_probs=47.8
Q ss_pred HHhhhccccEEEecCCCCCCCCC-HHHHHHHHhc-CCCCEEEecCCChHhHHHhhc--CCEEEEe
Q psy9039 180 KAASFFLSDGLIITGNATGDPAD-VSQLMSVKNA-VDLPILIGSGVTSDNVEHYMT--ADALIIG 240 (251)
Q Consensus 180 ~~a~~~~~D~v~VTG~~~g~~~~-~~~l~~vr~~-~~~PV~vG~GI~~~~v~~~~~--ADGvIVG 240 (251)
+.....|+|.+.|+-++ |.... .+.++++|+. .++||++|...|++++..+.. ||++.||
T Consensus 230 ~~L~~aG~d~I~vd~a~-g~~~~~~~~i~~i~~~~~~~~vi~G~v~t~~~a~~l~~aGad~i~vg 293 (450)
T TIGR01302 230 EALVKAGVDVIVIDSSH-GHSIYVIDSIKEIKKTYPDLDIIAGNVATAEQAKALIDAGADGLRVG 293 (450)
T ss_pred HHHHHhCCCEEEEECCC-CcHhHHHHHHHHHHHhCCCCCEEEEeCCCHHHHHHHHHhCCCEEEEC
Confidence 33334699999998876 33333 4779999988 489999999999999999996 9999887
|
This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models. |
| >PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=94.47 E-value=0.1 Score=50.62 Aligned_cols=61 Identities=23% Similarity=0.336 Sum_probs=47.5
Q ss_pred HHHhhhccccEEEecCCCCCCCCC-HHHHHHHHhcC-CCCEEEecCCChHhHHHhhc--CCEEEEe
Q psy9039 179 AKAASFFLSDGLIITGNATGDPAD-VSQLMSVKNAV-DLPILIGSGVTSDNVEHYMT--ADALIIG 240 (251)
Q Consensus 179 a~~a~~~~~D~v~VTG~~~g~~~~-~~~l~~vr~~~-~~PV~vG~GI~~~~v~~~~~--ADGvIVG 240 (251)
++.....++|.+.+...+ +.... .+.++.+|+.. ++||++|+++|.+++..+.+ ||++.||
T Consensus 233 a~~L~~agvdvivvD~a~-g~~~~vl~~i~~i~~~~p~~~vi~g~v~t~e~a~~l~~aGad~i~vg 297 (486)
T PRK05567 233 AEALVEAGVDVLVVDTAH-GHSEGVLDRVREIKAKYPDVQIIAGNVATAEAARALIEAGADAVKVG 297 (486)
T ss_pred HHHHHHhCCCEEEEECCC-CcchhHHHHHHHHHhhCCCCCEEEeccCCHHHHHHHHHcCCCEEEEC
Confidence 344345789988887664 33333 47788999887 89999999999999999996 9999886
|
|
| >PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=94.46 E-value=0.23 Score=44.32 Aligned_cols=92 Identities=23% Similarity=0.174 Sum_probs=64.4
Q ss_pred cchhhhhhHhhccC-CCCCCcccHHHHHHHhhhccccEEEecCCCCCCCCCHHHHHHHHhcCCCCEEEecCC-ChHhHHH
Q psy9039 153 NVLVFTDIKKKHSS-HAITADVDITETAKAASFFLSDGLIITGNATGDPADVSQLMSVKNAVDLPILIGSGV-TSDNVEH 230 (251)
Q Consensus 153 ~i~i~a~v~~k~~~-~~~~~~~~i~~~a~~a~~~~~D~v~VTG~~~g~~~~~~~l~~vr~~~~~PV~vG~GI-~~~~v~~ 230 (251)
.+.+++++....-. .+......+.++|+.....|++++-|--...-...+.+.++.+|+.+++||+.=-=| .+.++.+
T Consensus 49 ~~~vIaeik~~sps~g~i~~~~~~~~~A~~~~~~GA~aisvlte~~~f~g~~~~l~~v~~~v~iPvl~kdfi~~~~qi~~ 128 (260)
T PRK00278 49 KPAVIAEVKKASPSKGVIREDFDPVEIAKAYEAGGAACLSVLTDERFFQGSLEYLRAARAAVSLPVLRKDFIIDPYQIYE 128 (260)
T ss_pred CCeEEEEeeCCCCCCCccCCCCCHHHHHHHHHhCCCeEEEEecccccCCCCHHHHHHHHHhcCCCEEeeeecCCHHHHHH
Confidence 46677766554211 111234466777777777899999775554445566899999999999999964434 5788888
Q ss_pred hhc--CCEEEEeceEe
Q psy9039 231 YMT--ADALIIGSHFK 244 (251)
Q Consensus 231 ~~~--ADGvIVGS~~~ 244 (251)
... ||++.+.-++.
T Consensus 129 a~~~GAD~VlLi~~~l 144 (260)
T PRK00278 129 ARAAGADAILLIVAAL 144 (260)
T ss_pred HHHcCCCEEEEEeccC
Confidence 875 99999886664
|
|
| >PRK13957 indole-3-glycerol-phosphate synthase; Provisional | Back alignment and domain information |
|---|
Probab=94.43 E-value=0.24 Score=44.03 Aligned_cols=72 Identities=13% Similarity=0.131 Sum_probs=55.1
Q ss_pred ccHHHHHHHhhhccccEEEecCCCCCCCCCHHHHHHHHhcCCCCEEEecCC-ChHhHHHhhc--CCEEEEeceEe
Q psy9039 173 VDITETAKAASFFLSDGLIITGNATGDPADVSQLMSVKNAVDLPILIGSGV-TSDNVEHYMT--ADALIIGSHFK 244 (251)
Q Consensus 173 ~~i~~~a~~a~~~~~D~v~VTG~~~g~~~~~~~l~~vr~~~~~PV~vG~GI-~~~~v~~~~~--ADGvIVGS~~~ 244 (251)
....++|+.-+.+|++++-|-=...-...+.+.++++|+.+++||+.=-+| ++.|+.+... ||++..=.++.
T Consensus 61 ~d~~~~A~~y~~~GA~aISVlTe~~~F~Gs~~~l~~v~~~v~~PvL~KDFIid~~QI~ea~~~GADavLLI~~~L 135 (247)
T PRK13957 61 YHPVQIAKTYETLGASAISVLTDQSYFGGSLEDLKSVSSELKIPVLRKDFILDEIQIREARAFGASAILLIVRIL 135 (247)
T ss_pred CCHHHHHHHHHHCCCcEEEEEcCCCcCCCCHHHHHHHHHhcCCCEEeccccCCHHHHHHHHHcCCCEEEeEHhhC
Confidence 455666666556789998664444445667899999999999999999999 8999988875 99997654443
|
|
| >PRK00507 deoxyribose-phosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=94.24 E-value=0.21 Score=43.63 Aligned_cols=139 Identities=19% Similarity=0.172 Sum_probs=72.0
Q ss_pred ccEEEEEeeCChHHHHHHHHHcCccceecccccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHhhccCCCCCCc
Q psy9039 93 VPVGVQILSGCNKAALATAQAAGLDFIRAESFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSSHAITAD 172 (251)
Q Consensus 93 ~P~Gvn~~~N~~~~~~~ia~a~g~~Fir~~~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~k~~~~~~~~~ 172 (251)
+|+|.|...+- ......|...|++-+..-.-.+. --.|-+..-..|+...++..+.-.+|++- + .+. .++
T Consensus 66 FP~G~~~~~~K-~~e~~~Ai~~GA~EiD~Vin~~~--~~~g~~~~v~~ei~~v~~~~~~~~lKvIl----E--t~~-L~~ 135 (221)
T PRK00507 66 FPLGANTTAVK-AFEAKDAIANGADEIDMVINIGA--LKSGDWDAVEADIRAVVEAAGGAVLKVII----E--TCL-LTD 135 (221)
T ss_pred ccCCCChHHHH-HHHHHHHHHcCCceEeeeccHHH--hcCCCHHHHHHHHHHHHHhcCCceEEEEe----e--cCc-CCH
Confidence 46776655543 34445555566666553100110 01111211134444455543322444431 0 111 223
Q ss_pred ccHHHHHHHhhhccccEEEe-cCCCCCCCCCHHHHHHHHhcC--CCCEEEecCC-ChHhHHHhhcCCEEEEece
Q psy9039 173 VDITETAKAASFFLSDGLII-TGNATGDPADVSQLMSVKNAV--DLPILIGSGV-TSDNVEHYMTADALIIGSH 242 (251)
Q Consensus 173 ~~i~~~a~~a~~~~~D~v~V-TG~~~g~~~~~~~l~~vr~~~--~~PV~vG~GI-~~~~v~~~~~ADGvIVGS~ 242 (251)
+.+.++.+.+...|+|.+-+ ||...+ ..+.+.++.+++.. .++|.+.||| |.+++.+++.|-.--+||+
T Consensus 136 e~i~~a~~~~~~agadfIKTsTG~~~~-gat~~~v~~m~~~~~~~~~IKasGGIrt~~~a~~~i~aGA~riGtS 208 (221)
T PRK00507 136 EEKVKACEIAKEAGADFVKTSTGFSTG-GATVEDVKLMRETVGPRVGVKASGGIRTLEDALAMIEAGATRLGTS 208 (221)
T ss_pred HHHHHHHHHHHHhCCCEEEcCCCCCCC-CCCHHHHHHHHHHhCCCceEEeeCCcCCHHHHHHHHHcCcceEccC
Confidence 33444444455679995543 444322 34567777777765 5999999999 7899999997333344543
|
|
| >PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase | Back alignment and domain information |
|---|
Probab=94.20 E-value=0.94 Score=42.60 Aligned_cols=169 Identities=13% Similarity=0.201 Sum_probs=89.0
Q ss_pred cCCCCccccCCCchHHHHHHHH-----HHHHHHHhCCCCccEEEEEeeCChHHHHHHHHHcCccceecccccccccCCCc
Q psy9039 59 MHDVPYVLEAESGPEITANMTR-----LCAEIRKVLPPSVPVGVQILSGCNKAALATAQAAGLDFIRAESFVFGHMADEG 133 (251)
Q Consensus 59 ~~~~Pf~~p~~~gp~i~aa~~~-----~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g~~Fir~~~~~~~~~~~~G 133 (251)
.+|.+|+-|+-..|.-.+.+.. .+.+--+... +|+.+..+.+.+++..+-+ .-+..|.+. ....+.+
T Consensus 64 ~lG~~~~~Pi~iAP~g~~~l~hp~gE~a~AraA~~~g--i~~~lSt~ss~slEeva~~-~~~~~wfQl-----Y~~~Dr~ 135 (367)
T PLN02493 64 VLGFKISMPIMVAPTAMQKMAHPDGEYATARAASAAG--TIMTLSSWATSSVEEVAST-GPGIRFFQL-----YVYKNRN 135 (367)
T ss_pred ECCccccccceechHHHHhhcCCchHHHHHHHHHHcC--CCeeecCcccCCHHHHHhc-CCCCcEEEE-----eecCCHH
Confidence 4788999988777877666531 2222223345 7999998888766665432 122345553 1111222
Q ss_pred eeecCcchhHHHHHhcCCCcchhhhh----------hHhhccCCCCCCcccHHHHHHH--hh--hccccEEE-ecCCCCC
Q psy9039 134 LMNAQAGPLLRYRKQIGADNVLVFTD----------IKKKHSSHAITADVDITETAKA--AS--FFLSDGLI-ITGNATG 198 (251)
Q Consensus 134 li~~da~e~~~~r~~l~~~~i~i~a~----------v~~k~~~~~~~~~~~i~~~a~~--a~--~~~~D~v~-VTG~~~g 198 (251)
...++++..++.|..-+-+=-| +......|. ..+....... .. +...+.+. ..+....
T Consensus 136 ----~~~~li~RA~~aG~~alvlTvD~p~~G~R~~d~r~~~~~p~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (367)
T PLN02493 136 ----VVEQLVRRAERAGFKAIALTVDTPRLGRRESDIKNRFTLPP---NLTLKNFEGLDLGKMDEANDSGLASYVAGQID 208 (367)
T ss_pred ----HHHHHHHHHHHcCCCEEEEEcCCCCCCcchhhhcccCCCCc---ccchhhhhhccccCCCcccchhHHHHHhhcCC
Confidence 1456777777777632222111 111111110 0011110000 00 00000000 0001111
Q ss_pred CCCCHHHHHHHHhcCCCCEEEecCCChHhHHHhhc--CCEEEEece
Q psy9039 199 DPADVSQLMSVKNAVDLPILIGSGVTSDNVEHYMT--ADALIIGSH 242 (251)
Q Consensus 199 ~~~~~~~l~~vr~~~~~PV~vG~GI~~~~v~~~~~--ADGvIVGS~ 242 (251)
...+++.|+.+|+.+++||++-+=.+++.+..+.+ +||++|+..
T Consensus 209 ~~~tW~di~wlr~~~~~PiivKgV~~~~dA~~a~~~Gvd~I~Vsnh 254 (367)
T PLN02493 209 RTLSWKDVQWLQTITKLPILVKGVLTGEDARIAIQAGAAGIIVSNH 254 (367)
T ss_pred CCCCHHHHHHHHhccCCCEEeecCCCHHHHHHHHHcCCCEEEECCC
Confidence 23467999999999999999987779999998886 999999754
|
|
| >COG0149 TpiA Triosephosphate isomerase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.14 E-value=0.059 Score=47.95 Aligned_cols=32 Identities=22% Similarity=0.378 Sum_probs=29.2
Q ss_pred CCCEEEecCCChHhHHHhhc---CCEEEEeceEee
Q psy9039 214 DLPILIGSGVTSDNVEHYMT---ADALIIGSHFKQ 245 (251)
Q Consensus 214 ~~PV~vG~GI~~~~v~~~~~---ADGvIVGS~~~~ 245 (251)
++||+.||+|+++|+.+++. +||+.|||+-.+
T Consensus 202 ~v~IlYGGSV~~~N~~e~~~~~~idG~LVGgAslk 236 (251)
T COG0149 202 KVRILYGGSVKPGNAAELAAQPDIDGALVGGASLK 236 (251)
T ss_pred CeEEEEeCCcChhHHHHHhcCCCCCeEEEcceeec
Confidence 79999999999999999984 999999998665
|
|
| >TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic | Back alignment and domain information |
|---|
Probab=94.11 E-value=0.11 Score=48.16 Aligned_cols=68 Identities=21% Similarity=0.292 Sum_probs=47.8
Q ss_pred HHHHHHhhhccccEEEec---C------CCCCCC-CCHHHHHHHHhcC---CCCEEEecCC-ChHhHHHhhc--CCEEEE
Q psy9039 176 TETAKAASFFLSDGLIIT---G------NATGDP-ADVSQLMSVKNAV---DLPILIGSGV-TSDNVEHYMT--ADALII 239 (251)
Q Consensus 176 ~~~a~~a~~~~~D~v~VT---G------~~~g~~-~~~~~l~~vr~~~---~~PV~vG~GI-~~~~v~~~~~--ADGvIV 239 (251)
.+.++.+...|+|++.|. | ..+|.. +.++.+.++.+.. ++||++=||| +..++.+.+. ||.|.+
T Consensus 161 ~e~a~~Li~aGAD~ikVgiGpGSicttR~~~Gvg~pqltAv~~~a~aa~~~~v~VIaDGGIr~~gDI~KALA~GAd~VMl 240 (343)
T TIGR01305 161 GEMVEELILSGADIVKVGIGPGSVCTTRTKTGVGYPQLSAVIECADAAHGLKGHIISDGGCTCPGDVAKAFGAGADFVML 240 (343)
T ss_pred HHHHHHHHHcCCCEEEEcccCCCcccCceeCCCCcCHHHHHHHHHHHhccCCCeEEEcCCcCchhHHHHHHHcCCCEEEE
Confidence 444566666799998664 1 223333 4556666666543 6899999999 6788887775 999999
Q ss_pred eceE
Q psy9039 240 GSHF 243 (251)
Q Consensus 240 GS~~ 243 (251)
|+.|
T Consensus 241 G~ll 244 (343)
T TIGR01305 241 GGMF 244 (343)
T ss_pred CHhh
Confidence 9865
|
A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences. |
| >TIGR02708 L_lactate_ox L-lactate oxidase | Back alignment and domain information |
|---|
Probab=94.10 E-value=1.2 Score=41.86 Aligned_cols=163 Identities=10% Similarity=0.125 Sum_probs=85.8
Q ss_pred cCCCCccccCCCchHHHHHHH-----HHHHHHHHhCCCCccEEEEEeeCChHHHHHHHHHcCccceeccccccccc-CCC
Q psy9039 59 MHDVPYVLEAESGPEITANMT-----RLCAEIRKVLPPSVPVGVQILSGCNKAALATAQAAGLDFIRAESFVFGHM-ADE 132 (251)
Q Consensus 59 ~~~~Pf~~p~~~gp~i~aa~~-----~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g~~Fir~~~~~~~~~-~~~ 132 (251)
.+|.+|+-|+-..|.-...+. ..+.+--.... +|+.+..+.+.+++..+-+..-+-.|.+. |+ .+.
T Consensus 74 llG~~~~~Pv~iaP~g~~~l~~p~gE~~~ArAA~~~g--~~~~lSt~ss~slEev~~~~~~~~~wfQl------Y~~~dr 145 (367)
T TIGR02708 74 FLGHKLKSPFIMAPVAAHKLANEQGEVATARGVSEFG--SIYTTSSYSTADLPEISEALNGTPHWFQF------YMSKDD 145 (367)
T ss_pred eCCcccccccccCcHHHhhccCCcHHHHHHHHHHHcC--CCeeecccccCCHHHHHhhcCCCceEEEE------eccCCH
Confidence 478899999877787766553 12222223345 79999998887666554320012345553 22 121
Q ss_pred ceeecCcchhHHHHHhcCCCcchhhhh----------hHhhccCCCCCCcccHHHHHHHhhhccccE-E-EecCCCCCCC
Q psy9039 133 GLMNAQAGPLLRYRKQIGADNVLVFTD----------IKKKHSSHAITADVDITETAKAASFFLSDG-L-IITGNATGDP 200 (251)
Q Consensus 133 Gli~~da~e~~~~r~~l~~~~i~i~a~----------v~~k~~~~~~~~~~~i~~~a~~a~~~~~D~-v-~VTG~~~g~~ 200 (251)
.+ ..++++..++.|..-+-+=-| +......|. ..+... .... .+... . -+.+. ....
T Consensus 146 ~~----~~~li~RA~~aG~~alvlTvD~p~~g~R~~d~r~~~~~p~---~~~~~~--~~~~-~~~~~~~~~~~~~-~~~~ 214 (367)
T TIGR02708 146 GI----NRDIMDRVKADGAKAIVLTADATVGGNREVDVRNGFVFPV---GMPIVQ--EYLP-TGAGKSMDNVYKS-AKQK 214 (367)
T ss_pred HH----HHHHHHHHHHcCCCEEEEecCCCCCCcchhhhhcCCCCCC---ccchhh--hhcc-cCCccchhhhccc-cCCC
Confidence 11 345677777777633322111 111111110 000000 0000 00000 0 00111 1123
Q ss_pred CCHHHHHHHHhcCCCCEEEecCC-ChHhHHHhhc--CCEEEEec
Q psy9039 201 ADVSQLMSVKNAVDLPILIGSGV-TSDNVEHYMT--ADALIIGS 241 (251)
Q Consensus 201 ~~~~~l~~vr~~~~~PV~vG~GI-~~~~v~~~~~--ADGvIVGS 241 (251)
.+++.|+.+|+.+++||++- || +++.+..+.+ +|+++|+.
T Consensus 215 ~~w~~i~~l~~~~~~PvivK-Gv~~~eda~~a~~~Gvd~I~VS~ 257 (367)
T TIGR02708 215 LSPRDIEEIAGYSGLPVYVK-GPQCPEDADRALKAGASGIWVTN 257 (367)
T ss_pred CCHHHHHHHHHhcCCCEEEe-CCCCHHHHHHHHHcCcCEEEECC
Confidence 35788999999999999998 78 7888888886 99999874
|
Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence. |
| >TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase | Back alignment and domain information |
|---|
Probab=94.07 E-value=0.11 Score=44.96 Aligned_cols=65 Identities=25% Similarity=0.368 Sum_probs=46.5
Q ss_pred HHHHHHHhhhccccEEEecCCCCCCCC-CH-HHHHHHHhcCCCCEEEecCCChHhHHHhhc-CCEEEEeceEe
Q psy9039 175 ITETAKAASFFLSDGLIITGNATGDPA-DV-SQLMSVKNAVDLPILIGSGVTSDNVEHYMT-ADALIIGSHFK 244 (251)
Q Consensus 175 i~~~a~~a~~~~~D~v~VTG~~~g~~~-~~-~~l~~vr~~~~~PV~vG~GI~~~~v~~~~~-ADGvIVGS~~~ 244 (251)
++++++....+|+|++.|.|+ +|... .+ +.++++|+.+++||++ | |.+...+.. ||++.+=|-+-
T Consensus 13 ~~~ia~~v~~~gtDaI~VGGS-~gvt~~~~~~~v~~ik~~~~lPvil-f---p~~~~~i~~~aD~~~~~slln 80 (205)
T TIGR01769 13 IEKIAKNAKDAGTDAIMVGGS-LGIVESNLDQTVKKIKKITNLPVIL-F---PGNVNGLSRYADAVFFMSLLN 80 (205)
T ss_pred HHHHHHHHHhcCCCEEEEcCc-CCCCHHHHHHHHHHHHhhcCCCEEE-E---CCCccccCcCCCEEEEEEeec
Confidence 333444555579999999888 45443 23 5688999999999998 5 555555556 99999887653
|
This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum. |
| >cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain | Back alignment and domain information |
|---|
Probab=94.06 E-value=1.5 Score=41.54 Aligned_cols=40 Identities=18% Similarity=0.353 Sum_probs=34.4
Q ss_pred CCHHHHHHHHhcCCCCEEEecCCChHhHHHhhc--CCEEEEe
Q psy9039 201 ADVSQLMSVKNAVDLPILIGSGVTSDNVEHYMT--ADALIIG 240 (251)
Q Consensus 201 ~~~~~l~~vr~~~~~PV~vG~GI~~~~v~~~~~--ADGvIVG 240 (251)
.+++.|+++|+.++.||++.+=++.+.+..+.+ +||++|.
T Consensus 240 ~tW~~i~~lr~~~~~pvivKgV~~~~dA~~a~~~G~d~I~vs 281 (383)
T cd03332 240 LTWEDLAFLREWTDLPIVLKGILHPDDARRAVEAGVDGVVVS 281 (383)
T ss_pred CCHHHHHHHHHhcCCCEEEecCCCHHHHHHHHHCCCCEEEEc
Confidence 357899999999999999984448999888886 9999997
|
LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer. |
| >KOG0538|consensus | Back alignment and domain information |
|---|
Probab=93.90 E-value=0.14 Score=46.86 Aligned_cols=67 Identities=25% Similarity=0.393 Sum_probs=51.7
Q ss_pred HHHHhhhccccEEEecCCC--C--CCCCCHHHHHHHHhcC--CCCEEEecCC-ChHhHHHhhc--CCEEEEeceEe
Q psy9039 178 TAKAASFFLSDGLIITGNA--T--GDPADVSQLMSVKNAV--DLPILIGSGV-TSDNVEHYMT--ADALIIGSHFK 244 (251)
Q Consensus 178 ~a~~a~~~~~D~v~VTG~~--~--g~~~~~~~l~~vr~~~--~~PV~vG~GI-~~~~v~~~~~--ADGvIVGS~~~ 244 (251)
-|+.|..+|+++++||... . +.+.+.+.|.++.+++ .+||++-||+ +..++-+++. |-||.||--++
T Consensus 236 DA~~Ave~G~~GIIVSNHGgRQlD~vpAtI~~L~Evv~aV~~ri~V~lDGGVR~G~DVlKALALGAk~VfiGRP~v 311 (363)
T KOG0538|consen 236 DARKAVEAGVAGIIVSNHGGRQLDYVPATIEALPEVVKAVEGRIPVFLDGGVRRGTDVLKALALGAKGVFIGRPIV 311 (363)
T ss_pred HHHHHHHhCCceEEEeCCCccccCcccchHHHHHHHHHHhcCceEEEEecCcccchHHHHHHhcccceEEecCchh
Confidence 3566667899999998642 2 1244578888888877 6999999999 6777887776 99999997654
|
|
| >cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm) | Back alignment and domain information |
|---|
Probab=93.90 E-value=0.35 Score=38.72 Aligned_cols=54 Identities=15% Similarity=0.086 Sum_probs=41.4
Q ss_pred CCcccHHHHHHHhhhccccEEEecCCCCCCCCCH-HHHHHHHhcC--CCCEEEecCC
Q psy9039 170 TADVDITETAKAASFFLSDGLIITGNATGDPADV-SQLMSVKNAV--DLPILIGSGV 223 (251)
Q Consensus 170 ~~~~~i~~~a~~a~~~~~D~v~VTG~~~g~~~~~-~~l~~vr~~~--~~PV~vG~GI 223 (251)
..+.+.+++++.|....+|.+++|.--+...... +.++.+|+.- ++||++||++
T Consensus 34 G~~v~~e~~v~aa~~~~adiVglS~L~t~~~~~~~~~~~~l~~~gl~~v~vivGG~~ 90 (128)
T cd02072 34 GVLSPQEEFIDAAIETDADAILVSSLYGHGEIDCKGLREKCDEAGLKDILLYVGGNL 90 (128)
T ss_pred CCCCCHHHHHHHHHHcCCCEEEEeccccCCHHHHHHHHHHHHHCCCCCCeEEEECCC
Confidence 4557889999999888999999998665444444 4566777663 7999999996
|
Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains. |
| >TIGR00419 tim triosephosphate isomerase | Back alignment and domain information |
|---|
Probab=93.86 E-value=0.12 Score=44.64 Aligned_cols=32 Identities=16% Similarity=0.388 Sum_probs=28.7
Q ss_pred CCCEEEecCCChHhHHHhhc---CCEEEEeceEee
Q psy9039 214 DLPILIGSGVTSDNVEHYMT---ADALIIGSHFKQ 245 (251)
Q Consensus 214 ~~PV~vG~GI~~~~v~~~~~---ADGvIVGS~~~~ 245 (251)
++||+.||+|+++|+.+++. .||+-||++-.+
T Consensus 169 ~~~IlYGGSV~~~N~~~l~~~~~iDG~LvG~Asl~ 203 (205)
T TIGR00419 169 SVRVLCGAGISTGEDAELAAQLGAEGVLLASGSLK 203 (205)
T ss_pred CceEEEeCCCCHHHHHHHhcCCCCCEEEEeeeeec
Confidence 58999999999999999884 999999998653
|
Triosephosphate isomerase (tim/TPIA) is the glycolytic enzyme that catalyzes the reversible interconversion of glyceraldehyde 3-phosphate and dihydroxyacetone phosphate. The active site of the enzyme is located between residues 240-258 of the model ([AV]-Y-E-P-[LIVM]-W-[SA]-I-G-T-[GK]) with E being the active site residue. There is a slight deviation from this sequence within the archeal members of this family. |
| >PTZ00333 triosephosphate isomerase; Provisional | Back alignment and domain information |
|---|
Probab=93.73 E-value=0.073 Score=47.54 Aligned_cols=32 Identities=19% Similarity=0.404 Sum_probs=28.5
Q ss_pred CCCEEEecCCChHhHHHhhc---CCEEEEeceEee
Q psy9039 214 DLPILIGSGVTSDNVEHYMT---ADALIIGSHFKQ 245 (251)
Q Consensus 214 ~~PV~vG~GI~~~~v~~~~~---ADGvIVGS~~~~ 245 (251)
++||+-||+|+++|+.+++. .||+.||++-.+
T Consensus 207 ~~~ILYGGSV~~~N~~~l~~~~~vDG~LvG~asl~ 241 (255)
T PTZ00333 207 ATRIIYGGSVNEKNCKELIKQPDIDGFLVGGASLK 241 (255)
T ss_pred cceEEEcCCCCHHHHHHHhcCCCCCEEEEehHhhh
Confidence 58999999999999999974 999999987654
|
|
| >TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase | Back alignment and domain information |
|---|
Probab=93.72 E-value=0.55 Score=43.49 Aligned_cols=158 Identities=18% Similarity=0.234 Sum_probs=85.7
Q ss_pred CCCcCCCCccEEEEeecCC---CCccc-cCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeC-ChHHHHHHHHHcCcc
Q psy9039 43 PPSVPVGVQHGVIVENMHD---VPYVL-EAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSG-CNKAALATAQAAGLD 117 (251)
Q Consensus 43 ~~l~~~Gv~D~i~ieN~~~---~Pf~~-p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N-~~~~~~~ia~a~g~~ 117 (251)
+.|.++|+ |.||+-.-.| .-|.- +....+ ...++++++..+. ..+.+++... .....+..|...|.+
T Consensus 31 ~~Ld~aGV-~~IEvg~g~gl~g~s~~~G~~~~~~------~e~i~~~~~~~~~-~~~~~ll~pg~~~~~dl~~a~~~gvd 102 (333)
T TIGR03217 31 AALDEAGV-DAIEVTHGDGLGGSSFNYGFSAHTD------LEYIEAAADVVKR-AKVAVLLLPGIGTVHDLKAAYDAGAR 102 (333)
T ss_pred HHHHHcCC-CEEEEecCCCCCCccccCCCCCCCh------HHHHHHHHHhCCC-CEEEEEeccCccCHHHHHHHHHCCCC
Confidence 66889999 9999841111 11211 000111 1234445444332 3566555321 125567888888999
Q ss_pred ceecccccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHhhccCCCCCCcccHHHHHHHhhhccccEEEecCCCC
Q psy9039 118 FIRAESFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSSHAITADVDITETAKAASFFLSDGLIITGNAT 197 (251)
Q Consensus 118 Fir~~~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~~~~~D~v~VTG~~~ 197 (251)
.+|+.. .+++. ....+..++.++.|.+ +... +... +. .+++.+.+.++.+..+|+|.+.+.=+.-
T Consensus 103 ~iri~~----~~~e~----d~~~~~i~~ak~~G~~-v~~~--l~~s---~~-~~~e~l~~~a~~~~~~Ga~~i~i~DT~G 167 (333)
T TIGR03217 103 TVRVAT----HCTEA----DVSEQHIGMARELGMD-TVGF--LMMS---HM-TPPEKLAEQAKLMESYGADCVYIVDSAG 167 (333)
T ss_pred EEEEEe----ccchH----HHHHHHHHHHHHcCCe-EEEE--EEcc---cC-CCHHHHHHHHHHHHhcCCCEEEEccCCC
Confidence 999742 22221 1256777888888862 2221 1111 11 3445566666666668999998875532
Q ss_pred CCCC-CH-HHHHHHHhcCCCCEEEecCC
Q psy9039 198 GDPA-DV-SQLMSVKNAVDLPILIGSGV 223 (251)
Q Consensus 198 g~~~-~~-~~l~~vr~~~~~PV~vG~GI 223 (251)
...| +. +++..+|+..+..+-+|+=.
T Consensus 168 ~~~P~~v~~~v~~l~~~l~~~i~ig~H~ 195 (333)
T TIGR03217 168 AMLPDDVRDRVRALKAVLKPETQVGFHA 195 (333)
T ss_pred CCCHHHHHHHHHHHHHhCCCCceEEEEe
Confidence 2222 33 56778888765234456654
|
Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated. |
| >TIGR00222 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase | Back alignment and domain information |
|---|
Probab=93.59 E-value=0.32 Score=43.62 Aligned_cols=157 Identities=15% Similarity=0.153 Sum_probs=81.5
Q ss_pred CcCCCCccEEEEeecCCCCccccCCCc-hHHHHHHHHHHHHHHHhCCCCccEEE-----EEeeCChHHHHHHHHHcCccc
Q psy9039 45 SVPVGVQHGVIVENMHDVPYVLEAESG-PEITANMTRLCAEIRKVLPPSVPVGV-----QILSGCNKAALATAQAAGLDF 118 (251)
Q Consensus 45 l~~~Gv~D~i~ieN~~~~Pf~~p~~~g-p~i~aa~~~~i~~vr~~~~~~~P~Gv-----n~~~N~~~~~~~ia~a~g~~F 118 (251)
+.++|+ |+|.+-.-++++-.-. .++ +++..-|..-++.+++..+ .|+.+ +.|-+ +...+.-| .++
T Consensus 31 ~~~aG~-d~ilvGdSlgm~~lG~-~~t~~vtldem~~h~~aV~rg~~--~~~vv~DmPf~sy~~-~e~a~~na----~rl 101 (263)
T TIGR00222 31 FADAGV-DVILVGDSLGMVVLGH-DSTLPVTVADMIYHTAAVKRGAP--NCLIVTDLPFMSYAT-PEQALKNA----ARV 101 (263)
T ss_pred HHHcCC-CEEEECccHhHHhcCC-CCCCCcCHHHHHHHHHHHHhhCC--CceEEeCCCcCCCCC-HHHHHHHH----HHH
Confidence 578999 9999865555533221 122 5888889999999998844 23333 14432 22222222 133
Q ss_pred eecccccccccCCCceeecCcchhHHHHHhcCCCcchhhhhh--Hhhc----c-CCC-CCCcccHHHHHHHhh---hccc
Q psy9039 119 IRAESFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDI--KKKH----S-SHA-ITADVDITETAKAAS---FFLS 187 (251)
Q Consensus 119 ir~~~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v--~~k~----~-~~~-~~~~~~i~~~a~~a~---~~~~ 187 (251)
++. .|.+++=..+..+....-+.+....|.+++-+ .|+. + .-. ..++.+..++.+.|. ..||
T Consensus 102 ~~e-------aGa~aVkiEgg~~~~~~i~~l~~~gIpV~gHiGltPq~a~~~ggy~~qgrt~~~a~~~i~~A~a~e~AGA 174 (263)
T TIGR00222 102 MQE-------TGANAVKLEGGEWLVETVQMLTERGVPVVGHLGLTPQSVNILGGYKVQGKDEEAAKKLLEDALALEEAGA 174 (263)
T ss_pred HHH-------hCCeEEEEcCcHhHHHHHHHHHHCCCCEEEecCCCceeEeecCCeeecCCCHHHHHHHHHHHHHHHHcCC
Confidence 331 22333333333333332233333345555211 1111 0 000 011233445555554 3699
Q ss_pred cEEEecCCCCCCCCCHHHHHHHHhcCCCCEE-EecCC
Q psy9039 188 DGLIITGNATGDPADVSQLMSVKNAVDLPIL-IGSGV 223 (251)
Q Consensus 188 D~v~VTG~~~g~~~~~~~l~~vr~~~~~PV~-vG~GI 223 (251)
+++.+-|.. .+..+++.+..++|++ +|.|-
T Consensus 175 ~~ivlE~vp------~~~a~~It~~l~iP~iGIGaG~ 205 (263)
T TIGR00222 175 QLLVLECVP------VELAAKITEALAIPVIGIGAGN 205 (263)
T ss_pred CEEEEcCCc------HHHHHHHHHhCCCCEEeeccCC
Confidence 999997653 3667788889999986 44444
|
Members of this family are 3-methyl-2-oxobutanoate hydroxymethyltransferase, the first enzyme of the pantothenate biosynthesis pathway. An alternate name is ketopantoate hydroxymethyltransferase. |
| >PRK00042 tpiA triosephosphate isomerase; Provisional | Back alignment and domain information |
|---|
Probab=93.58 E-value=0.075 Score=47.32 Aligned_cols=32 Identities=28% Similarity=0.478 Sum_probs=28.9
Q ss_pred CCCEEEecCCChHhHHHhhc---CCEEEEeceEee
Q psy9039 214 DLPILIGSGVTSDNVEHYMT---ADALIIGSHFKQ 245 (251)
Q Consensus 214 ~~PV~vG~GI~~~~v~~~~~---ADGvIVGS~~~~ 245 (251)
++||+-||+|+++|+.+++. .||+-||++-.+
T Consensus 203 ~~~IlYGGSV~~~N~~~l~~~~~vDG~LVG~Asl~ 237 (250)
T PRK00042 203 KVRILYGGSVKPDNAAELMAQPDIDGALVGGASLK 237 (250)
T ss_pred CceEEEcCCCCHHHHHHHhcCCCCCEEEEeeeeec
Confidence 48999999999999999884 999999998765
|
|
| >PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.58 E-value=0.19 Score=48.95 Aligned_cols=61 Identities=26% Similarity=0.380 Sum_probs=47.4
Q ss_pred HHHhhhccccEEEecCCCCCCCC-CHHHHHHHHhcC-CCCEEEecCCChHhHHHhhc--CCEEEEe
Q psy9039 179 AKAASFFLSDGLIITGNATGDPA-DVSQLMSVKNAV-DLPILIGSGVTSDNVEHYMT--ADALIIG 240 (251)
Q Consensus 179 a~~a~~~~~D~v~VTG~~~g~~~-~~~~l~~vr~~~-~~PV~vG~GI~~~~v~~~~~--ADGvIVG 240 (251)
++.....|+|.+.++-.+ |... .++.++++|+.. ++||++|...|.++++.+.+ ||++.||
T Consensus 246 ~~~l~~ag~d~i~id~a~-G~s~~~~~~i~~ik~~~~~~~v~aG~V~t~~~a~~~~~aGad~I~vg 310 (495)
T PTZ00314 246 AAALIEAGVDVLVVDSSQ-GNSIYQIDMIKKLKSNYPHVDIIAGNVVTADQAKNLIDAGADGLRIG 310 (495)
T ss_pred HHHHHHCCCCEEEEecCC-CCchHHHHHHHHHHhhCCCceEEECCcCCHHHHHHHHHcCCCEEEEC
Confidence 344345699999988764 3333 357899999886 79999987779999999996 9999875
|
|
| >PRK14567 triosephosphate isomerase; Provisional | Back alignment and domain information |
|---|
Probab=93.56 E-value=0.083 Score=47.13 Aligned_cols=32 Identities=19% Similarity=0.441 Sum_probs=28.8
Q ss_pred CCCEEEecCCChHhHHHhhc---CCEEEEeceEee
Q psy9039 214 DLPILIGSGVTSDNVEHYMT---ADALIIGSHFKQ 245 (251)
Q Consensus 214 ~~PV~vG~GI~~~~v~~~~~---ADGvIVGS~~~~ 245 (251)
++||+-||+|+++|+.+++. .||+-||++-.+
T Consensus 202 ~v~IlYGGSV~~~N~~~l~~~~diDG~LVGgasL~ 236 (253)
T PRK14567 202 NIKIVYGGSLKAENAKDILSLPDVDGGLIGGASLK 236 (253)
T ss_pred cceEEEcCcCCHHHHHHHHcCCCCCEEEeehhhhc
Confidence 58999999999999999985 999999988654
|
|
| >cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins | Back alignment and domain information |
|---|
Probab=93.55 E-value=0.25 Score=42.18 Aligned_cols=83 Identities=14% Similarity=0.158 Sum_probs=57.6
Q ss_pred hhhhhhHhhccCCC--CCCcccHHHHHHHhhhccccEEEecCCCCCCCCCH-HHHHHHHhcC---CCCEEEecCC-ChHh
Q psy9039 155 LVFTDIKKKHSSHA--ITADVDITETAKAASFFLSDGLIITGNATGDPADV-SQLMSVKNAV---DLPILIGSGV-TSDN 227 (251)
Q Consensus 155 ~i~a~v~~k~~~~~--~~~~~~i~~~a~~a~~~~~D~v~VTG~~~g~~~~~-~~l~~vr~~~---~~PV~vG~GI-~~~~ 227 (251)
++++.....+|... ...+.+.+++.+.+....+|.+++|...+...+.. +.++++|+.. ++||++||.. +.+
T Consensus 100 ~~v~~~l~~~G~~vi~lG~~~p~~~l~~~~~~~~~d~v~lS~~~~~~~~~~~~~i~~lr~~~~~~~~~i~vGG~~~~~~- 178 (201)
T cd02070 100 NLVATMLEANGFEVIDLGRDVPPEEFVEAVKEHKPDILGLSALMTTTMGGMKEVIEALKEAGLRDKVKVMVGGAPVNQE- 178 (201)
T ss_pred HHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEeccccccHHHHHHHHHHHHHCCCCcCCeEEEECCcCCHH-
Confidence 55555555555443 23557788888888778999999998765544444 5677888774 6899999988 654
Q ss_pred HHHhhcCCEEE
Q psy9039 228 VEHYMTADALI 238 (251)
Q Consensus 228 v~~~~~ADGvI 238 (251)
..+.+.||+..
T Consensus 179 ~~~~~GaD~~~ 189 (201)
T cd02070 179 FADEIGADGYA 189 (201)
T ss_pred HHHHcCCcEEE
Confidence 55555588763
|
A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases. |
| >PLN02561 triosephosphate isomerase | Back alignment and domain information |
|---|
Probab=93.46 E-value=0.091 Score=46.87 Aligned_cols=30 Identities=23% Similarity=0.437 Sum_probs=27.0
Q ss_pred CCCEEEecCCChHhHHHhhc---CCEEEEeceE
Q psy9039 214 DLPILIGSGVTSDNVEHYMT---ADALIIGSHF 243 (251)
Q Consensus 214 ~~PV~vG~GI~~~~v~~~~~---ADGvIVGS~~ 243 (251)
++||+-||+|+++|+.+++. .||+-||++=
T Consensus 204 ~i~ILYGGSV~~~N~~~l~~~~~iDG~LVG~AS 236 (253)
T PLN02561 204 TTRIIYGGSVTGANCKELAAQPDVDGFLVGGAS 236 (253)
T ss_pred cceEEEeCCcCHHHHHHHhcCCCCCeEEEehHh
Confidence 58999999999999999974 9999999863
|
|
| >TIGR01496 DHPS dihydropteroate synthase | Back alignment and domain information |
|---|
Probab=93.44 E-value=2.1 Score=38.19 Aligned_cols=96 Identities=18% Similarity=0.183 Sum_probs=56.0
Q ss_pred HHHHhhCCCCcCCCCccEEEEeecCCCCccccCCCchH-HHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHHHHHHHHc
Q psy9039 36 AEIRKVLPPSVPVGVQHGVIVENMHDVPYVLEAESGPE-ITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQAA 114 (251)
Q Consensus 36 ~~a~~~a~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~-i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~ 114 (251)
+.+++.++.+.+.|+ |.|-|--+..-|..++. .+. =..-+..+++.+++.++ +|+.+..+.. ..+..|...
T Consensus 23 ~~~~~~a~~~~~~GA-~iIDIG~~st~p~~~~i--~~~~E~~rl~~~v~~~~~~~~--~plsiDT~~~---~vi~~al~~ 94 (257)
T TIGR01496 23 DKAVAHAERMLEEGA-DIIDVGGESTRPGADRV--SPEEELNRVVPVIKALRDQPD--VPISVDTYRA---EVARAALEA 94 (257)
T ss_pred HHHHHHHHHHHHCCC-CEEEECCCCCCCCCCCC--CHHHHHHHHHHHHHHHHhcCC--CeEEEeCCCH---HHHHHHHHc
Confidence 344555566678899 99987212223444432 222 22335567788887777 7999998753 344555556
Q ss_pred CccceecccccccccCCCceeecCcchhHHHHHhcCC
Q psy9039 115 GLDFIRAESFVFGHMADEGLMNAQAGPLLRYRKQIGA 151 (251)
Q Consensus 115 g~~Fir~~~~~~~~~~~~Gli~~da~e~~~~r~~l~~ 151 (251)
|++.+-.- .|. . ..+..+..+++++
T Consensus 95 G~~iINsi---------s~~-~--~~~~~~l~~~~~~ 119 (257)
T TIGR01496 95 GADIINDV---------SGG-Q--DPAMLEVAAEYGV 119 (257)
T ss_pred CCCEEEEC---------CCC-C--CchhHHHHHHcCC
Confidence 88877641 111 1 2456677777776
|
This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284. |
| >cd02067 B12-binding B12 binding domain (B12-BD) | Back alignment and domain information |
|---|
Probab=93.40 E-value=0.33 Score=37.55 Aligned_cols=84 Identities=19% Similarity=0.247 Sum_probs=52.1
Q ss_pred hhhhhhHhhccCCC--CCCcccHHHHHHHhhhccccEEEecCCCCCCCCCH-HHHHHHHhcC--CCCEEEecCCChHhHH
Q psy9039 155 LVFTDIKKKHSSHA--ITADVDITETAKAASFFLSDGLIITGNATGDPADV-SQLMSVKNAV--DLPILIGSGVTSDNVE 229 (251)
Q Consensus 155 ~i~a~v~~k~~~~~--~~~~~~i~~~a~~a~~~~~D~v~VTG~~~g~~~~~-~~l~~vr~~~--~~PV~vG~GI~~~~v~ 229 (251)
++++.....+|... .....+.+++.+.+....+|.+++|...+...... +.++++|+.. +++|++||-.-.+.-.
T Consensus 17 ~~~~~~l~~~G~~V~~lg~~~~~~~l~~~~~~~~pdvV~iS~~~~~~~~~~~~~i~~l~~~~~~~~~i~vGG~~~~~~~~ 96 (119)
T cd02067 17 NIVARALRDAGFEVIDLGVDVPPEEIVEAAKEEDADAIGLSGLLTTHMTLMKEVIEELKEAGLDDIPVLVGGAIVTRDFK 96 (119)
T ss_pred HHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEeccccccHHHHHHHHHHHHHcCCCCCeEEEECCCCChhHH
Confidence 44454444444332 12445667777777777899999999865544443 5677888774 5888888887322222
Q ss_pred Hhh--cCCEEE
Q psy9039 230 HYM--TADALI 238 (251)
Q Consensus 230 ~~~--~ADGvI 238 (251)
.+. .+|+++
T Consensus 97 ~~~~~G~D~~~ 107 (119)
T cd02067 97 FLKEIGVDAYF 107 (119)
T ss_pred HHHHcCCeEEE
Confidence 222 288775
|
This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. |
| >TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic | Back alignment and domain information |
|---|
Probab=93.37 E-value=0.22 Score=46.22 Aligned_cols=55 Identities=20% Similarity=0.210 Sum_probs=43.7
Q ss_pred ccccEEEecCCCCCCCCC-HHHHHHHHhcCCCCEEEecCC-ChHhHHHhhc--CCEEEEe
Q psy9039 185 FLSDGLIITGNATGDPAD-VSQLMSVKNAVDLPILIGSGV-TSDNVEHYMT--ADALIIG 240 (251)
Q Consensus 185 ~~~D~v~VTG~~~g~~~~-~~~l~~vr~~~~~PV~vG~GI-~~~~v~~~~~--ADGvIVG 240 (251)
.++|++++==++ |.... .+.++++|+..+-+.+++|-| |++.++++.. ||++.||
T Consensus 120 ~~~d~iviD~Ah-Ghs~~~i~~ik~ir~~~p~~~viaGNV~T~e~a~~Li~aGAD~ikVg 178 (343)
T TIGR01305 120 PQLKFICLDVAN-GYSEHFVEFVKLVREAFPEHTIMAGNVVTGEMVEELILSGADIVKVG 178 (343)
T ss_pred CCCCEEEEECCC-CcHHHHHHHHHHHHhhCCCCeEEEecccCHHHHHHHHHcCCCEEEEc
Confidence 369999885554 44433 588999999887677778878 9999999996 9999988
|
A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences. |
| >COG0434 SgcQ Predicted TIM-barrel enzyme [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.29 E-value=0.065 Score=47.27 Aligned_cols=40 Identities=33% Similarity=0.520 Sum_probs=32.4
Q ss_pred CcceEEEeeeecccccccCCCCCCCcchHHHHHHHHHhhCCC
Q psy9039 3 QKHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPP 44 (251)
Q Consensus 3 ~~~~~~~~~~~~~p~~~~~pG~P~~~~~~~~i~~~a~~~a~~ 44 (251)
.+|++|+||+++.||.+. + +|.--..|..|..+.++++..
T Consensus 47 G~DavivEN~gD~Pf~k~-v-~~~tvaaMa~iv~~v~r~v~i 86 (263)
T COG0434 47 GVDAVIVENYGDAPFLKD-V-GPETVAAMAVIVREVVREVSI 86 (263)
T ss_pred CCcEEEEeccCCCCCCCC-C-ChHHHHHHHHHHHHHHHhccc
Confidence 589999999999999873 2 244446899999999998873
|
|
| >cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage | Back alignment and domain information |
|---|
Probab=93.18 E-value=0.63 Score=41.11 Aligned_cols=180 Identities=14% Similarity=0.180 Sum_probs=93.5
Q ss_pred cCCCCccEEEEeecC---CCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEee---CChHHH--HHHHHHcCcc
Q psy9039 46 VPVGVQHGVIVENMH---DVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILS---GCNKAA--LATAQAAGLD 117 (251)
Q Consensus 46 ~~~Gv~D~i~ieN~~---~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~---N~~~~~--~~ia~a~g~~ 117 (251)
++.|+ |+|.+.-.. ...|.| .+..+..-|...++.+.+.++ +|+.+..=. |..... ..-....|+.
T Consensus 26 e~~G~-~ai~~s~~~~~~s~G~pD---~~~~~~~e~~~~~~~I~~~~~--~Pv~~D~~~G~g~~~~~~~~v~~~~~~G~~ 99 (243)
T cd00377 26 ERAGF-KAIYTSGAGVAASLGLPD---GGLLTLDEVLAAVRRIARAVD--LPVIADADTGYGNALNVARTVRELEEAGAA 99 (243)
T ss_pred HHcCC-CEEEeccHHHHHhcCCCC---CCcCCHHHHHHHHHHHHhhcc--CCEEEEcCCCCCCHHHHHHHHHHHHHcCCE
Confidence 55699 999875222 123444 356777778888888888877 798775432 321010 1111113333
Q ss_pred ceecc--cc---cccccCCCceeecC--cchhHHHHHhcCC-CcchhhhhhHhhccCCCCCCcccHHHHHHHhh-h--cc
Q psy9039 118 FIRAE--SF---VFGHMADEGLMNAQ--AGPLLRYRKQIGA-DNVLVFTDIKKKHSSHAITADVDITETAKAAS-F--FL 186 (251)
Q Consensus 118 Fir~~--~~---~~~~~~~~Gli~~d--a~e~~~~r~~l~~-~~i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~-~--~~ 186 (251)
-+... .+ +| ..+...++..+ ...+...++.... .++.+++...... .....+++..+.+. + .|
T Consensus 100 gv~iED~~~~k~~g-~~~~~~~~~~ee~~~ki~aa~~a~~~~~~~~IiARTDa~~-----~~~~~~~eai~Ra~ay~~AG 173 (243)
T cd00377 100 GIHIEDQVGPKKCG-HHGGKVLVPIEEFVAKIKAARDARDDLPDFVIIARTDALL-----AGEEGLDEAIERAKAYAEAG 173 (243)
T ss_pred EEEEecCCCCcccc-CCCCCeecCHHHHHHHHHHHHHHHhccCCeEEEEEcCchh-----ccCCCHHHHHHHHHHHHHcC
Confidence 33321 00 11 01111222221 2222222232222 2566655322110 11134566666655 2 69
Q ss_pred ccEEEecCCCCCCCCCHHHHHHHHhcCCCCEEEec---C--CChHhHHHhhcCCEEEEeceE
Q psy9039 187 SDGLIITGNATGDPADVSQLMSVKNAVDLPILIGS---G--VTSDNVEHYMTADALIIGSHF 243 (251)
Q Consensus 187 ~D~v~VTG~~~g~~~~~~~l~~vr~~~~~PV~vG~---G--I~~~~v~~~~~ADGvIVGS~~ 243 (251)
+|++.+.|.. +.+.++++.+..+.|+++-- + ++.+++.++- ..-++.|+.+
T Consensus 174 AD~v~v~~~~-----~~~~~~~~~~~~~~Pl~~~~~~~~~~~~~~~l~~lG-~~~v~~~~~~ 229 (243)
T cd00377 174 ADGIFVEGLK-----DPEEIRAFAEAPDVPLNVNMTPGGNLLTVAELAELG-VRRVSYGLAL 229 (243)
T ss_pred CCEEEeCCCC-----CHHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHCC-CeEEEEChHH
Confidence 9999998876 56888898888999998863 3 3444444431 6777776643
|
Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to |
| >PLN02535 glycolate oxidase | Back alignment and domain information |
|---|
Probab=93.18 E-value=2.2 Score=40.14 Aligned_cols=164 Identities=13% Similarity=0.194 Sum_probs=87.5
Q ss_pred ecCCCCccccCCCchHHHHHHHH-----HHHHHHHhCCCCccEEEEEeeCChHHHHHHHHHcCccceeccccccccc-CC
Q psy9039 58 NMHDVPYVLEAESGPEITANMTR-----LCAEIRKVLPPSVPVGVQILSGCNKAALATAQAAGLDFIRAESFVFGHM-AD 131 (251)
Q Consensus 58 N~~~~Pf~~p~~~gp~i~aa~~~-----~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g~~Fir~~~~~~~~~-~~ 131 (251)
+.+|.+|+-|+-..|.-...+.. .+.+--+... +|+.+..+.+.+++..+-+ .-+..|.+. |+ .+
T Consensus 65 ~~lG~~~~~P~~iaP~g~~~l~hp~gE~a~AraA~~~g--~~~~lSt~s~~slEeva~~-~~~~~wfQl------Y~~~d 135 (364)
T PLN02535 65 TILGYTISAPIMIAPTAMHKLAHPEGEIATARAAAACN--TIMVLSFMASCTVEEVASS-CNAVRFLQL------YVYKR 135 (364)
T ss_pred EECCccccccceechHHHhcccCcchHHHHHHHHHHcC--CCeEecCcccCCHHHHHhc-CCCCeEEEE------eccCC
Confidence 35799999998778877666532 2222233445 7999999888766654321 122345553 22 22
Q ss_pred CceeecCcchhHHHHHhcCCCcchhhhh----------hHhhccCCCCCCcccHHHHHHHhhhccccEEEecC------C
Q psy9039 132 EGLMNAQAGPLLRYRKQIGADNVLVFTD----------IKKKHSSHAITADVDITETAKAASFFLSDGLIITG------N 195 (251)
Q Consensus 132 ~Gli~~da~e~~~~r~~l~~~~i~i~a~----------v~~k~~~~~~~~~~~i~~~a~~a~~~~~D~v~VTG------~ 195 (251)
.++ ..++++..++.|..-+-+=-| +......| ........... ....-.-.+ .
T Consensus 136 r~~----~~~ll~RA~~aG~~alvlTvD~p~~g~R~~d~r~~~~~p------~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 204 (364)
T PLN02535 136 RDI----AAQLVQRAEKNGYKAIVLTADVPRLGRREADIKNKMISP------QLKNFEGLLST-EVVSDKGSGLEAFASE 204 (364)
T ss_pred HHH----HHHHHHHHHHcCCCEEEEeecCCCCCCchhhhhcCCCCc------chhhHhhhhcc-CCCccccccHHHHHHh
Confidence 221 445677777777633332111 11111111 00000000000 000000000 0
Q ss_pred CCCCCCCHHHHHHHHhcCCCCEEEecCCChHhHHHhhc--CCEEEEec
Q psy9039 196 ATGDPADVSQLMSVKNAVDLPILIGSGVTSDNVEHYMT--ADALIIGS 241 (251)
Q Consensus 196 ~~g~~~~~~~l~~vr~~~~~PV~vG~GI~~~~v~~~~~--ADGvIVGS 241 (251)
.-....+++.++.+|+.+++||++.+=++++++..+.+ +|+++|.-
T Consensus 205 ~~~~~~tW~~i~~lr~~~~~PvivKgV~~~~dA~~a~~~GvD~I~vsn 252 (364)
T PLN02535 205 TFDASLSWKDIEWLRSITNLPILIKGVLTREDAIKAVEVGVAGIIVSN 252 (364)
T ss_pred ccCCCCCHHHHHHHHhccCCCEEEecCCCHHHHHHHHhcCCCEEEEeC
Confidence 01123467999999999999998876558999888886 99999863
|
|
| >PF04309 G3P_antiterm: Glycerol-3-phosphate responsive antiterminator; InterPro: IPR006699 Glycerol enters bacterial cells via facilitated diffusion, an energy-independent transport process catalysed by the glycerol transport facilitator GlpF, an integral membrane protein of the aquaporin family | Back alignment and domain information |
|---|
Probab=92.90 E-value=0.14 Score=43.21 Aligned_cols=129 Identities=17% Similarity=0.293 Sum_probs=74.1
Q ss_pred HHHHHHHHHHhCCCCccEEEEE-----eeCChHHHHHHHHHcCccceecccccccccCCCceeecCcchhHHHHHhcCCC
Q psy9039 78 MTRLCAEIRKVLPPSVPVGVQI-----LSGCNKAALATAQAAGLDFIRAESFVFGHMADEGLMNAQAGPLLRYRKQIGAD 152 (251)
Q Consensus 78 ~~~~i~~vr~~~~~~~P~Gvn~-----~~N~~~~~~~ia~a~g~~Fir~~~~~~~~~~~~Gli~~da~e~~~~r~~l~~~ 152 (251)
+..+++++++.-. .+-|++ +.++ ..++ +|+.. ....+|+|... ..+.++.+++|.-
T Consensus 33 l~~~v~~~~~~gK---~vfVHiDli~Gl~~D---~~~i------~~L~~------~~~~dGIISTk-~~~i~~Ak~~gl~ 93 (175)
T PF04309_consen 33 LKDIVKRLKAAGK---KVFVHIDLIEGLSRD---EAGI------EYLKE------YGKPDGIISTK-SNLIKRAKKLGLL 93 (175)
T ss_dssp HHHHHHHHHHTT----EEEEECCGEETB-SS---HHHH------HHHHH------TT--SEEEESS-HHHHHHHHHTT-E
T ss_pred HHHHHHHHHHcCC---EEEEEehhcCCCCCC---HHHH------HHHHH------cCCCcEEEeCC-HHHHHHHHHcCCE
Confidence 5667788876532 333332 2222 2333 56553 34478988777 5567778888873
Q ss_pred cchhhhhhHhhccCCCCCCcccHHHHHHHhhhccccEEEecCCCCCCCCCHHHHHHHHhcCCCCEEEecCC-ChHhHHHh
Q psy9039 153 NVLVFTDIKKKHSSHAITADVDITETAKAASFFLSDGLIITGNATGDPADVSQLMSVKNAVDLPILIGSGV-TSDNVEHY 231 (251)
Q Consensus 153 ~i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~~~~~D~v~VTG~~~g~~~~~~~l~~vr~~~~~PV~vG~GI-~~~~v~~~ 231 (251)
.|+=+ +..+...++...+..+...+|++-+- .| .-...++++++.++.|+++||=| +.+++.++
T Consensus 94 tIqRi----------FliDS~al~~~~~~i~~~~PD~vEil---Pg--~~p~vi~~i~~~~~~PiIAGGLI~~~e~v~~a 158 (175)
T PF04309_consen 94 TIQRI----------FLIDSSALETGIKQIEQSKPDAVEIL---PG--VMPKVIKKIREETNIPIIAGGLIRTKEDVEEA 158 (175)
T ss_dssp EEEEE----------E-SSHHHHHHHHHHHHHHT-SEEEEE---SC--CHHHHHCCCCCCCSS-EEEESS--SHHHHHHH
T ss_pred EEEEe----------eeecHHHHHHHHHHHhhcCCCEEEEc---hH--HHHHHHHHHHHhcCCCEEeecccCCHHHHHHH
Confidence 33211 01233444444445455689998663 22 12366888888899999988888 78999999
Q ss_pred hc--CCEEEEe
Q psy9039 232 MT--ADALIIG 240 (251)
Q Consensus 232 ~~--ADGvIVG 240 (251)
++ |+++-.+
T Consensus 159 l~aGa~aVSTS 169 (175)
T PF04309_consen 159 LKAGADAVSTS 169 (175)
T ss_dssp CCTTCEEEEE-
T ss_pred HHcCCEEEEcC
Confidence 96 8887654
|
Intracellular glycerol is usually converted to glycerol-3-P in an ATP-requiring phosphorylation reaction catalysed by glycerol kinase (GlpK). Glycerol-3-P, the inducer of the glpFK operon, is not a substrate for GlpF and hence remains entrapped in the cell where it is metabolized further. In some bacterial species, for example Bacillus firmus, glycerol-3-P activates the antiterminator GlpP []. In B. subtilis, glpF and glpK are organised in an operon followed by the glycerol-3-P dehydrogenase-encoding glpD gene and preceded by glpP coding for an antiterminator regulating the expression of glpFK, glpD and glpTQ. Their induction requires the inducer glycerol-3-P, which activates the antiterminator GlpP by allowing it to bind to the leader region of glpD and presumably also of glpFK and glpTQ mRNAs.; GO: 0006355 regulation of transcription, DNA-dependent, 0009607 response to biotic stimulus; PDB: 1VKF_A 3KTS_G. |
| >cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds | Back alignment and domain information |
|---|
Probab=92.87 E-value=0.25 Score=43.71 Aligned_cols=152 Identities=14% Similarity=0.142 Sum_probs=83.8
Q ss_pred CcCCCCccEEEEeecCC---CCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEee---CChHHHHHHHHHcCccc
Q psy9039 45 SVPVGVQHGVIVENMHD---VPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILS---GCNKAALATAQAAGLDF 118 (251)
Q Consensus 45 l~~~Gv~D~i~ieN~~~---~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~---N~~~~~~~ia~a~g~~F 118 (251)
++++|+ |+|.+.-... ..|.| .+.++..-|...++++++.++. .|+.+.+=. +.+...+..+ .+|
T Consensus 28 ~e~aG~-dai~v~~s~~a~~~G~pD---~~~vtl~em~~~~~~I~r~~~~-~pviaD~~~G~g~~~~~~~~~~----~~l 98 (240)
T cd06556 28 FADAGL-NVMLVGDSQGMTVAGYDD---TLPYPVNDVPYHVRAVRRGAPL-ALIVADLPFGAYGAPTAAFELA----KTF 98 (240)
T ss_pred HHHcCC-CEEEEChHHHHHhcCCCC---CCCcCHHHHHHHHHHHHhhCCC-CCEEEeCCCCCCcCHHHHHHHH----HHH
Confidence 456799 9998762211 22333 2567878888888999887753 377776532 2211111111 244
Q ss_pred eecccccccccCCCceeecCcchhHHHHHhcCCCcchhhhhh--HhhccCC------CCCCcccHHHHHHHhh-h--ccc
Q psy9039 119 IRAESFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDI--KKKHSSH------AITADVDITETAKAAS-F--FLS 187 (251)
Q Consensus 119 ir~~~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v--~~k~~~~------~~~~~~~i~~~a~~a~-~--~~~ 187 (251)
++ .|.+|+-..|..+..+.-+.+-...+.+++.+ .+++-.. ...+...+++..+.+. + .|+
T Consensus 99 ~~--------aGa~gv~iED~~~~~~~i~ai~~a~i~ViaRtd~~pq~~~~~gg~~~~~~~~~~~~~ai~Ra~ay~~AGA 170 (240)
T cd06556 99 MR--------AGAAGVKIEGGEWHIETLQMLTAAAVPVIAHTGLTPQSVNTSGGDEGQYRGDEAGEQLIADALAYAPAGA 170 (240)
T ss_pred HH--------cCCcEEEEcCcHHHHHHHHHHHHcCCeEEEEeCCchhhhhccCCceeeccCHHHHHHHHHHHHHHHHcCC
Confidence 44 44666666665444433333322345555532 2221000 0001234555555554 3 699
Q ss_pred cEEEecCCCCCCCCCHHHHHHHHhcCCCCEEE
Q psy9039 188 DGLIITGNATGDPADVSQLMSVKNAVDLPILI 219 (251)
Q Consensus 188 D~v~VTG~~~g~~~~~~~l~~vr~~~~~PV~v 219 (251)
|++.+.+. +.+.++++.+..++|++.
T Consensus 171 d~i~~e~~------~~e~~~~i~~~~~~P~~~ 196 (240)
T cd06556 171 DLIVMECV------PVELAKQITEALAIPLAG 196 (240)
T ss_pred CEEEEcCC------CHHHHHHHHHhCCCCEEE
Confidence 99999753 467788888889999864
|
Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT). |
| >PRK13384 delta-aminolevulinic acid dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=92.86 E-value=2 Score=39.50 Aligned_cols=159 Identities=15% Similarity=0.211 Sum_probs=81.0
Q ss_pred HHHhhCCCCcCCCCccEEEEeecCCCCccccCCCchHH---HHHHHHHHHHHHHhCCCCccEEEEEe-------------
Q psy9039 37 EIRKVLPPSVPVGVQHGVIVENMHDVPYVLEAESGPEI---TANMTRLCAEIRKVLPPSVPVGVQIL------------- 100 (251)
Q Consensus 37 ~a~~~a~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i---~aa~~~~i~~vr~~~~~~~P~Gvn~~------------- 100 (251)
.++++++.+.+.|+ .+|++ ||+|=.+. ..|-.. ---+.+.++.+|+.+++. +|.+=
T Consensus 62 ~l~~~~~~~~~~Gi-~~v~l---Fgv~~~Kd-~~gs~A~~~~g~v~~air~iK~~~pdl---~vi~DVcLc~YT~hGHcG 133 (322)
T PRK13384 62 ALADEIERLYALGI-RYVMP---FGISHHKD-AKGSDTWDDNGLLARMVRTIKAAVPEM---MVIPDICFCEYTDHGHCG 133 (322)
T ss_pred HHHHHHHHHHHcCC-CEEEE---eCCCCCCC-CCcccccCCCChHHHHHHHHHHHCCCe---EEEeeeecccCCCCCcee
Confidence 34555577888999 99986 77764322 111000 001246788899888753 22211
Q ss_pred -------eCCh----HHHHHHHHH-cCccceecccccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHh------
Q psy9039 101 -------SGCN----KAALATAQA-AGLDFIRAESFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKK------ 162 (251)
Q Consensus 101 -------~N~~----~~~~~ia~a-~g~~Fir~~~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~------ 162 (251)
-|+. ....++.+| .|++++. +.+.+.+....+.+.-+..|-.++.+++.-.+
T Consensus 134 il~~g~i~ND~Tl~~L~~~Als~A~AGADiVA----------PSdMMDGrV~aIR~aLd~~g~~~v~ImSYsaKyaS~fY 203 (322)
T PRK13384 134 VLHNDEVDNDATVENLVKQSVTAAKAGADMLA----------PSAMMDGQVKAIRQGLDAAGFEHVAILAHSAKFASSFY 203 (322)
T ss_pred eccCCcCccHHHHHHHHHHHHHHHHcCCCeEe----------cccccccHHHHHHHHHHHCCCCCCceeehhHhhhhhhc
Confidence 1211 112333333 5566654 33444444333444444444445555442211
Q ss_pred --------------hccCCCCCCcccHHHHHHHhhh---ccccEEEecCCCCCCCCCHHHHHHHHhcCCCCEEE
Q psy9039 163 --------------KHSSHAITADVDITETAKAASF---FLSDGLIITGNATGDPADVSQLMSVKNAVDLPILI 219 (251)
Q Consensus 163 --------------k~~~~~~~~~~~i~~~a~~a~~---~~~D~v~VTG~~~g~~~~~~~l~~vr~~~~~PV~v 219 (251)
+.+.. .+.....+..+++.. -|+|.+.|- .+ -+-++.++++|+.+++||++
T Consensus 204 GPFRdAa~Sap~gDrksYQ--mdp~n~~eAlre~~~D~~EGAD~lMVK---Pa-l~YLDIi~~~k~~~~lPvaa 271 (322)
T PRK13384 204 GPFRAAVDCELSGDRKSYQ--LDYANGRQALLEALLDEAEGADILMVK---PG-TPYLDVLSRLRQETHLPLAA 271 (322)
T ss_pred chHHHHhcCCCCCCccccc--CCCCCHHHHHHHHHhhHhhCCCEEEEc---CC-chHHHHHHHHHhccCCCEEE
Confidence 11111 122223333444442 499999883 22 12368899999999999985
|
|
| >KOG4202|consensus | Back alignment and domain information |
|---|
Probab=92.85 E-value=0.94 Score=38.49 Aligned_cols=126 Identities=17% Similarity=0.169 Sum_probs=73.3
Q ss_pred ccEEEEEeeCChHHH-HHHHHHcCccceecccccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHhhccCCCCCC
Q psy9039 93 VPVGVQILSGCNKAA-LATAQAAGLDFIRAESFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSSHAITA 171 (251)
Q Consensus 93 ~P~Gvn~~~N~~~~~-~~ia~a~g~~Fir~~~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~k~~~~~~~~ 171 (251)
.|..|-+|.|++.+. +.++...+.+.++.. ..|-.....+++.+-+++| |++.
T Consensus 92 ~~~lVGVF~nqp~e~il~~~~~~~ldiVQLH----------------G~es~~~~~~L~rpvikvf---------pln~- 145 (227)
T KOG4202|consen 92 AKKLVGVFVNQPEETILRAADSSDLDIVQLH----------------GNESRAAFSRLVRPVIKVF---------PLNA- 145 (227)
T ss_pred chheEEEeecCCHHHHHHHHhhcCCceEEec----------------CcccHHHHHHhCCceEEEE---------ecCc-
Confidence 466788889986443 556555666777753 1234444555777777765 2210
Q ss_pred cccHHHHHHHhhh-ccccEEEecCCCCC---CCCCHHHHHHHHhcCCCCEEEecCCChHhHHHhhc---CCEEEEeceEe
Q psy9039 172 DVDITETAKAASF-FLSDGLIITGNATG---DPADVSQLMSVKNAVDLPILIGSGVTSDNVEHYMT---ADALIIGSHFK 244 (251)
Q Consensus 172 ~~~i~~~a~~a~~-~~~D~v~VTG~~~g---~~~~~~~l~~vr~~~~~PV~vG~GI~~~~v~~~~~---ADGvIVGS~~~ 244 (251)
-+..+.... ---|-..| ++++| ..-+++.+.-..-....|-+++||+||+|+.+++. -||+=|.|.+.
T Consensus 146 ----n~~~~~~~~vP~~d~~lv-dsetGG~G~~~dW~~~s~~~vr~~~~~~LAGGltP~NV~dAlsi~~p~gvDVSsGve 220 (227)
T KOG4202|consen 146 ----NEDGKLLNEVPEEDWILV-DSETGGSGKGFDWAQFSLPSVRSRNGWLLAGGLTPTNVSDALSILQPDGVDVSSGVE 220 (227)
T ss_pred ----hhhhHhhccCCchhheee-ccccCcCcCccCHHHhcCccccccCceEEecCCCccchHHhhhhcCCceeeccCcee
Confidence 111121111 12232222 22233 23345444322122347899999999999999985 99999999998
Q ss_pred ecCee
Q psy9039 245 QGGRT 249 (251)
Q Consensus 245 ~~g~~ 249 (251)
-||+-
T Consensus 221 TdGiq 225 (227)
T KOG4202|consen 221 TDGIQ 225 (227)
T ss_pred cCCcc
Confidence 88863
|
|
| >PRK09283 delta-aminolevulinic acid dehydratase; Validated | Back alignment and domain information |
|---|
Probab=92.82 E-value=2.1 Score=39.37 Aligned_cols=31 Identities=16% Similarity=0.243 Sum_probs=23.7
Q ss_pred ccccEEEecCCCCCCCCCHHHHHHHHhcCCCCEEE
Q psy9039 185 FLSDGLIITGNATGDPADVSQLMSVKNAVDLPILI 219 (251)
Q Consensus 185 ~~~D~v~VTG~~~g~~~~~~~l~~vr~~~~~PV~v 219 (251)
-|+|.+.|- .+ -+-++.|+++|+.+++||++
T Consensus 240 EGAD~lMVK---Pa-l~YLDIi~~~k~~~~~Pvaa 270 (323)
T PRK09283 240 EGADMVMVK---PA-LPYLDIIRRVKDEFNLPVAA 270 (323)
T ss_pred hCCCEEEEc---CC-chHHHHHHHHHhcCCCCEEE
Confidence 599999883 22 12368899999999999985
|
|
| >cd00384 ALAD_PBGS Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll | Back alignment and domain information |
|---|
Probab=92.78 E-value=2.1 Score=39.19 Aligned_cols=160 Identities=18% Similarity=0.278 Sum_probs=82.1
Q ss_pred HHHHhhCCCCcCCCCccEEEEeecCCCCccccCCCchHH---HHHHHHHHHHHHHhCCCCccEEEEE-------------
Q psy9039 36 AEIRKVLPPSVPVGVQHGVIVENMHDVPYVLEAESGPEI---TANMTRLCAEIRKVLPPSVPVGVQI------------- 99 (251)
Q Consensus 36 ~~a~~~a~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i---~aa~~~~i~~vr~~~~~~~P~Gvn~------------- 99 (251)
+.++++++.+.+.|+ -+|++ ||+|-.+. ..|-.. ---+.+.++.+|+.+++. +|++
T Consensus 51 d~l~~~~~~~~~~Gi-~~v~L---Fgv~~~Kd-~~gs~A~~~~g~v~~air~iK~~~p~l---~vi~DvcLc~YT~hGHc 122 (314)
T cd00384 51 DSLVEEAEELADLGI-RAVIL---FGIPEHKD-EIGSEAYDPDGIVQRAIRAIKEAVPEL---VVITDVCLCEYTDHGHC 122 (314)
T ss_pred HHHHHHHHHHHHCCC-CEEEE---ECCCCCCC-CCcccccCCCChHHHHHHHHHHhCCCc---EEEEeeeccCCCCCCcc
Confidence 334555567788999 99986 78874322 111000 001346778888888753 2222
Q ss_pred -------eeCCh----HHHHHHHHH-cCccceecccccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHh-----
Q psy9039 100 -------LSGCN----KAALATAQA-AGLDFIRAESFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKK----- 162 (251)
Q Consensus 100 -------~~N~~----~~~~~ia~a-~g~~Fir~~~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~----- 162 (251)
.-|+. ....++.++ .|++++. +++.+.+.-..+.+.-+..|-.++.+++.-.+
T Consensus 123 Gil~~~~idND~Tl~~L~k~Als~A~AGADiVA----------PSdMMDGrV~aIR~aLd~~g~~~v~ImsYsaKyaSaf 192 (314)
T cd00384 123 GILKDDYVDNDATLELLAKIAVSHAEAGADIVA----------PSDMMDGRVAAIREALDEAGFSDVPIMSYSAKYASAF 192 (314)
T ss_pred eeccCCcCccHHHHHHHHHHHHHHHHcCCCeee----------cccccccHHHHHHHHHHHCCCCCCceeecHHHhhhhc
Confidence 11221 122344433 5566654 44444444444444444444445555442111
Q ss_pred ----------------hccCCCCCCcccHHHHHHHhhh---ccccEEEecCCCCCCCCCHHHHHHHHhcCCCCEEE
Q psy9039 163 ----------------KHSSHAITADVDITETAKAASF---FLSDGLIITGNATGDPADVSQLMSVKNAVDLPILI 219 (251)
Q Consensus 163 ----------------k~~~~~~~~~~~i~~~a~~a~~---~~~D~v~VTG~~~g~~~~~~~l~~vr~~~~~PV~v 219 (251)
|.+.. .+.....+..+.+.. -|+|.+.|- .+ -+-++.|+++|+.+++|+.+
T Consensus 193 YGPFRdAa~Sap~~gDRktYQ--mdpan~~eAlre~~~D~~EGAD~lMVK---Pa-l~YLDIi~~~k~~~~~Pvaa 262 (314)
T cd00384 193 YGPFRDAADSAPSFGDRKTYQ--MDPANRREALREVELDIEEGADILMVK---PA-LAYLDIIRDVRERFDLPVAA 262 (314)
T ss_pred cchHHHHhhcCCCCCCccccC--CCCCCHHHHHHHHHhhHHhCCCEEEEc---CC-chHHHHHHHHHHhcCCCEEE
Confidence 11111 122223333444442 499999883 22 12368899999999999875
|
This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. They either contain a cysteine-rich zinc binding site (consensus DXCXCX(Y/F)X3G(H/Q)CG) or an aspartate-rich magnesium binding site (consensus DXALDX(Y/F)X3G(H/Q)DG). The cyste |
| >PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated | Back alignment and domain information |
|---|
Probab=92.77 E-value=0.91 Score=42.10 Aligned_cols=158 Identities=15% Similarity=0.190 Sum_probs=84.8
Q ss_pred CCCcCCCCccEEEEeec---CCCCcc-ccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeC-ChHHHHHHHHHcCcc
Q psy9039 43 PPSVPVGVQHGVIVENM---HDVPYV-LEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSG-CNKAALATAQAAGLD 117 (251)
Q Consensus 43 ~~l~~~Gv~D~i~ieN~---~~~Pf~-~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N-~~~~~~~ia~a~g~~ 117 (251)
+.|.+.|+ |.||+-.- .+.-|. .+.... -...++.+++..+. ..+..++... .....+..|...|.+
T Consensus 32 ~~L~~aGv-~~IEvg~~~g~g~~s~~~g~~~~~------~~e~i~~~~~~~~~-~~~~~ll~pg~~~~~dl~~a~~~gvd 103 (337)
T PRK08195 32 RALDAAGV-PVIEVTHGDGLGGSSFNYGFGAHT------DEEYIEAAAEVVKQ-AKIAALLLPGIGTVDDLKMAYDAGVR 103 (337)
T ss_pred HHHHHcCC-CEEEeecCCCCCCccccCCCCCCC------HHHHHHHHHHhCCC-CEEEEEeccCcccHHHHHHHHHcCCC
Confidence 66889999 99998421 111121 110111 12244555444443 3666655321 125567777888999
Q ss_pred ceecccccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHhhccCCCCCCcccHHHHHHHhhhccccEEEecCCCC
Q psy9039 118 FIRAESFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSSHAITADVDITETAKAASFFLSDGLIITGNAT 197 (251)
Q Consensus 118 Fir~~~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~~~~~D~v~VTG~~~ 197 (251)
.+|+.. .++.. ....+..++.++.|. .+... +. .+ +. .+++.+.+.++.+..+|+|.+.+.=+.-
T Consensus 104 ~iri~~----~~~e~----~~~~~~i~~ak~~G~-~v~~~--l~--~a-~~-~~~e~l~~~a~~~~~~Ga~~i~i~DT~G 168 (337)
T PRK08195 104 VVRVAT----HCTEA----DVSEQHIGLARELGM-DTVGF--LM--MS-HM-APPEKLAEQAKLMESYGAQCVYVVDSAG 168 (337)
T ss_pred EEEEEE----ecchH----HHHHHHHHHHHHCCC-eEEEE--EE--ec-cC-CCHHHHHHHHHHHHhCCCCEEEeCCCCC
Confidence 999742 22221 125667778888876 23221 11 11 11 2345566666666668999988865532
Q ss_pred CCCC-CH-HHHHHHHhcCCCCEEEecCC
Q psy9039 198 GDPA-DV-SQLMSVKNAVDLPILIGSGV 223 (251)
Q Consensus 198 g~~~-~~-~~l~~vr~~~~~PV~vG~GI 223 (251)
...| +. +.++.+|+..+-.+-+|+=.
T Consensus 169 ~~~P~~v~~~v~~l~~~l~~~i~ig~H~ 196 (337)
T PRK08195 169 ALLPEDVRDRVRALRAALKPDTQVGFHG 196 (337)
T ss_pred CCCHHHHHHHHHHHHHhcCCCCeEEEEe
Confidence 2222 33 56778888763234456544
|
|
| >TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial | Back alignment and domain information |
|---|
Probab=92.68 E-value=0.3 Score=45.07 Aligned_cols=54 Identities=20% Similarity=0.283 Sum_probs=43.6
Q ss_pred cccEEEecCCCCCCCC-CHHHHHHHHhcCCCCEEEecCC-ChHhHHHhhc--CCEEEEe
Q psy9039 186 LSDGLIITGNATGDPA-DVSQLMSVKNAVDLPILIGSGV-TSDNVEHYMT--ADALIIG 240 (251)
Q Consensus 186 ~~D~v~VTG~~~g~~~-~~~~l~~vr~~~~~PV~vG~GI-~~~~v~~~~~--ADGvIVG 240 (251)
.+|++++-=++ |... -.+.++++|+.++.|.++.+.| |.+.+..+.+ ||++.||
T Consensus 108 ~~d~i~~D~ah-g~s~~~~~~i~~i~~~~p~~~vi~GnV~t~e~a~~l~~aGad~I~V~ 165 (321)
T TIGR01306 108 TPEYITIDIAH-GHSNSVINMIKHIKTHLPDSFVIAGNVGTPEAVRELENAGADATKVG 165 (321)
T ss_pred CCCEEEEeCcc-CchHHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHcCcCEEEEC
Confidence 38998886554 4433 3578999999999998888889 8899999986 9999998
|
A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages. |
| >cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=92.21 E-value=0.4 Score=44.23 Aligned_cols=61 Identities=20% Similarity=0.310 Sum_probs=44.6
Q ss_pred HHHhhhccccEEEecCCCCCCCCC-HHHHHHHHhcC-CCCEEEecCCChHhHHHhhc--CCEEEEe
Q psy9039 179 AKAASFFLSDGLIITGNATGDPAD-VSQLMSVKNAV-DLPILIGSGVTSDNVEHYMT--ADALIIG 240 (251)
Q Consensus 179 a~~a~~~~~D~v~VTG~~~g~~~~-~~~l~~vr~~~-~~PV~vG~GI~~~~v~~~~~--ADGvIVG 240 (251)
++.....++|.+.++-++ |.... .+.++++|+.. ++||++|.-.|.+++.++.+ ||+++||
T Consensus 99 ~~~l~eagv~~I~vd~~~-G~~~~~~~~i~~ik~~~p~v~Vi~G~v~t~~~A~~l~~aGaD~I~vg 163 (325)
T cd00381 99 AEALVEAGVDVIVIDSAH-GHSVYVIEMIKFIKKKYPNVDVIAGNVVTAEAARDLIDAGADGVKVG 163 (325)
T ss_pred HHHHHhcCCCEEEEECCC-CCcHHHHHHHHHHHHHCCCceEEECCCCCHHHHHHHHhcCCCEEEEC
Confidence 333334689999886543 22232 47788999876 48999877779999999886 9999984
|
IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents. |
| >PLN02429 triosephosphate isomerase | Back alignment and domain information |
|---|
Probab=92.20 E-value=0.22 Score=45.78 Aligned_cols=32 Identities=19% Similarity=0.355 Sum_probs=29.1
Q ss_pred CCCEEEecCCChHhHHHhhc---CCEEEEeceEee
Q psy9039 214 DLPILIGSGVTSDNVEHYMT---ADALIIGSHFKQ 245 (251)
Q Consensus 214 ~~PV~vG~GI~~~~v~~~~~---ADGvIVGS~~~~ 245 (251)
+++|+.||+|+++|+.+++. .||+-||++-.+
T Consensus 263 ~irILYGGSV~~~N~~el~~~~diDG~LVGgASL~ 297 (315)
T PLN02429 263 KTRIIYGGSVNGGNSAELAKEEDIDGFLVGGASLK 297 (315)
T ss_pred CceEEEcCccCHHHHHHHhcCCCCCEEEeecceec
Confidence 58999999999999999984 999999998765
|
|
| >PRK06843 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=92.10 E-value=0.47 Score=45.16 Aligned_cols=61 Identities=21% Similarity=0.324 Sum_probs=45.9
Q ss_pred HHHhhhccccEEEecCCCCCCCCC-HHHHHHHHhcC-CCCEEEecCCChHhHHHhhc--CCEEEEe
Q psy9039 179 AKAASFFLSDGLIITGNATGDPAD-VSQLMSVKNAV-DLPILIGSGVTSDNVEHYMT--ADALIIG 240 (251)
Q Consensus 179 a~~a~~~~~D~v~VTG~~~g~~~~-~~~l~~vr~~~-~~PV~vG~GI~~~~v~~~~~--ADGvIVG 240 (251)
++.....|+|.+++--++ +.... .+.++++|+.. +++|++|.-.|.+++..+.+ ||++.||
T Consensus 158 v~~lv~aGvDvI~iD~a~-g~~~~~~~~v~~ik~~~p~~~vi~g~V~T~e~a~~l~~aGaD~I~vG 222 (404)
T PRK06843 158 VEELVKAHVDILVIDSAH-GHSTRIIELVKKIKTKYPNLDLIAGNIVTKEAALDLISVGADCLKVG 222 (404)
T ss_pred HHHHHhcCCCEEEEECCC-CCChhHHHHHHHHHhhCCCCcEEEEecCCHHHHHHHHHcCCCEEEEC
Confidence 344445699999864444 33333 47799999886 78888877779999999986 9999988
|
|
| >COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=91.89 E-value=1.1 Score=40.29 Aligned_cols=98 Identities=16% Similarity=0.161 Sum_probs=55.5
Q ss_pred cchhHHHHHhcCCCcchhhhhh--HhhccCCCCCCcccHHHHHHHhhhccccEEEecCCCCCCCCCHHHHHHHHhcCCCC
Q psy9039 139 AGPLLRYRKQIGADNVLVFTDI--KKKHSSHAITADVDITETAKAASFFLSDGLIITGNATGDPADVSQLMSVKNAVDLP 216 (251)
Q Consensus 139 a~e~~~~r~~l~~~~i~i~a~v--~~k~~~~~~~~~~~i~~~a~~a~~~~~D~v~VTG~~~g~~~~~~~l~~vr~~~~~P 216 (251)
..++...++++|.+.+....-. ..+.+.+ .....+...++.+..-|+|.+ ++..+.+.+..+++.+.+.+|
T Consensus 132 ~~~v~~~a~~~Gmp~v~~~YpRg~~~~~~~~--~d~~~v~~aaRlaaelGADIi-----K~~ytg~~e~F~~vv~~~~vp 204 (265)
T COG1830 132 ISQVVEDAHELGMPLVAWAYPRGPAIKDEYH--RDADLVGYAARLAAELGADII-----KTKYTGDPESFRRVVAACGVP 204 (265)
T ss_pred HHHHHHHHHHcCCceEEEEeccCCccccccc--ccHHHHHHHHHHHHHhcCCeE-----eecCCCChHHHHHHHHhCCCC
Confidence 4556666777776444432211 1111101 111222233333444689986 445555567888988889999
Q ss_pred EEEecCCCh---HhH----HHhhc--CCEEEEeceE
Q psy9039 217 ILIGSGVTS---DNV----EHYMT--ADALIIGSHF 243 (251)
Q Consensus 217 V~vG~GI~~---~~v----~~~~~--ADGvIVGS~~ 243 (251)
|++.||=+. +.+ .+++. |-|+++|--+
T Consensus 205 VviaGG~k~~~~~~~l~~~~~ai~aGa~G~~~GRNi 240 (265)
T COG1830 205 VVIAGGPKTETEREFLEMVTAAIEAGAMGVAVGRNI 240 (265)
T ss_pred EEEeCCCCCCChHHHHHHHHHHHHccCcchhhhhhh
Confidence 999999842 223 33443 8899988544
|
|
| >PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART) | Back alignment and domain information |
|---|
Probab=91.79 E-value=0.2 Score=44.91 Aligned_cols=180 Identities=20% Similarity=0.259 Sum_probs=78.6
Q ss_pred CcCCCCccEEEEeecCC------------CCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHHHHHHH
Q psy9039 45 SVPVGVQHGVIVENMHD------------VPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQ 112 (251)
Q Consensus 45 l~~~Gv~D~i~ieN~~~------------~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~ 112 (251)
.+++|+ |-|++=|-+- +||.+ .=.++..| .+++-...+++ |+..-+...+|...+.
T Consensus 31 ae~gGa-DlI~~ynsGrfR~~G~~Slagllpygn----aN~iv~em---~~eiLp~v~~t-PViaGv~atDP~~~~~--- 98 (268)
T PF09370_consen 31 AEKGGA-DLILIYNSGRFRMAGRGSLAGLLPYGN----ANEIVMEM---AREILPVVKDT-PVIAGVCATDPFRDMD--- 98 (268)
T ss_dssp HHHTT--SEEEE-HHHHHHHTT--GGGGGBTEEE----HHHHHHHH---HHHHGGG-SSS--EEEEE-TT-TT--HH---
T ss_pred HHhcCC-CEEEEecchhHhhCCCcchhhhhcccC----HhHHHHHH---HHhhhhhccCC-CEEEEecCcCCCCcHH---
Confidence 468999 9999876441 46654 22232222 26666665554 8777776777532221
Q ss_pred HcCccceec---cccccc-ccCCCceeecCcchhHHHHHhcCC---CcchhhhhhHhhccCCCCCCcccHHHHHHHhhhc
Q psy9039 113 AAGLDFIRA---ESFVFG-HMADEGLMNAQAGPLLRYRKQIGA---DNVLVFTDIKKKHSSHAITADVDITETAKAASFF 185 (251)
Q Consensus 113 a~g~~Fir~---~~~~~~-~~~~~Gli~~da~e~~~~r~~l~~---~~i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~~~ 185 (251)
.|++. ..|.|. ...--|+|.+. +....++.|. .+|.++.. +.+.+.- +++-...++.|+.....
T Consensus 99 ----~fl~~lk~~Gf~GV~NfPTvgliDG~---fR~~LEe~Gmgy~~EVemi~~-A~~~gl~-T~~yvf~~e~A~~M~~A 169 (268)
T PF09370_consen 99 ----RFLDELKELGFSGVQNFPTVGLIDGQ---FRQNLEETGMGYDREVEMIRK-AHEKGLF-TTAYVFNEEQARAMAEA 169 (268)
T ss_dssp ----HHHHHHHHHT-SEEEE-S-GGG--HH---HHHHHHHTT--HHHHHHHHHH-HHHTT-E-E--EE-SHHHHHHHHHH
T ss_pred ----HHHHHHHHhCCceEEECCcceeeccH---HHHHHHhcCCCHHHHHHHHHH-HHHCCCe-eeeeecCHHHHHHHHHc
Confidence 12221 111221 12222555433 2222223332 23333321 2222221 12223334455554457
Q ss_pred cccEEEe-----cCCCCCCCC--CH----HHHHHHHhc---C--C-CCEEEecCC-ChHhHHHhhc----CCEEEEeceE
Q psy9039 186 LSDGLII-----TGNATGDPA--DV----SQLMSVKNA---V--D-LPILIGSGV-TSDNVEHYMT----ADALIIGSHF 243 (251)
Q Consensus 186 ~~D~v~V-----TG~~~g~~~--~~----~~l~~vr~~---~--~-~PV~vG~GI-~~~~v~~~~~----ADGvIVGS~~ 243 (251)
|+|.+|+ ||...|... ++ ++++++.++ . + +-++-||-| +|+++..+++ ++|++-||+|
T Consensus 170 GaDiiv~H~GlT~gG~~Ga~~~~sl~~a~~~~~~i~~aa~~v~~dii~l~hGGPI~~p~D~~~~l~~t~~~~Gf~G~Ss~ 249 (268)
T PF09370_consen 170 GADIIVAHMGLTTGGSIGAKTALSLEEAAERIQEIFDAARAVNPDIIVLCHGGPIATPEDAQYVLRNTKGIHGFIGASSM 249 (268)
T ss_dssp T-SEEEEE-SS----------S--HHHHHHHHHHHHHHHHCC-TT-EEEEECTTB-SHHHHHHHHHH-TTEEEEEESTTT
T ss_pred CCCEEEecCCccCCCCcCccccCCHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHHHHHHhcCCCCCEEecccch
Confidence 9999976 443333321 22 334444332 1 2 456667778 7999999884 6899999987
Q ss_pred ee
Q psy9039 244 KQ 245 (251)
Q Consensus 244 ~~ 245 (251)
.+
T Consensus 250 ER 251 (268)
T PF09370_consen 250 ER 251 (268)
T ss_dssp TH
T ss_pred hh
Confidence 53
|
Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C. |
| >TIGR01501 MthylAspMutase methylaspartate mutase, S subunit | Back alignment and domain information |
|---|
Probab=91.77 E-value=0.87 Score=36.75 Aligned_cols=54 Identities=15% Similarity=0.092 Sum_probs=38.9
Q ss_pred CCcccHHHHHHHhhhccccEEEecCCCCCCCCCH-HHHHHHHhcC--CCCEEEecCC
Q psy9039 170 TADVDITETAKAASFFLSDGLIITGNATGDPADV-SQLMSVKNAV--DLPILIGSGV 223 (251)
Q Consensus 170 ~~~~~i~~~a~~a~~~~~D~v~VTG~~~g~~~~~-~~l~~vr~~~--~~PV~vG~GI 223 (251)
..+.+.+++++.+....+|.+++|.--+.....+ +.++++|+.- +.++++||++
T Consensus 36 G~~v~~e~~v~aa~~~~adiVglS~l~~~~~~~~~~~~~~l~~~gl~~~~vivGG~~ 92 (134)
T TIGR01501 36 GVLSPQEEFIKAAIETKADAILVSSLYGHGEIDCKGLRQKCDEAGLEGILLYVGGNL 92 (134)
T ss_pred CCCCCHHHHHHHHHHcCCCEEEEecccccCHHHHHHHHHHHHHCCCCCCEEEecCCc
Confidence 4567889999999888999999998654333333 4566777663 5777788874
|
This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation. |
| >PRK06096 molybdenum transport protein ModD; Provisional | Back alignment and domain information |
|---|
Probab=91.77 E-value=0.61 Score=42.33 Aligned_cols=61 Identities=15% Similarity=0.170 Sum_probs=42.4
Q ss_pred HHHHHHhhhccccEEEecCCCCCCCCCHHHHHHHHhc-----CCCCEEEecCCChHhHHHhhc--CCEEEEece
Q psy9039 176 TETAKAASFFLSDGLIITGNATGDPADVSQLMSVKNA-----VDLPILIGSGVTSDNVEHYMT--ADALIIGSH 242 (251)
Q Consensus 176 ~~~a~~a~~~~~D~v~VTG~~~g~~~~~~~l~~vr~~-----~~~PV~vG~GI~~~~v~~~~~--ADGvIVGS~ 242 (251)
.+.++.+...|+|.+-.- .-+.+.++++.+. .+..+-+.||||++|++++.. +|.+++|+-
T Consensus 199 leqa~ea~~agaDiI~LD------n~~~e~l~~av~~~~~~~~~~~leaSGGI~~~ni~~yA~tGvD~Is~gal 266 (284)
T PRK06096 199 PKEAIAALRAQPDVLQLD------KFSPQQATEIAQIAPSLAPHCTLSLAGGINLNTLKNYADCGIRLFITSAP 266 (284)
T ss_pred HHHHHHHHHcCCCEEEEC------CCCHHHHHHHHHHhhccCCCeEEEEECCCCHHHHHHHHhcCCCEEEECcc
Confidence 344566666799998872 2223333332222 357899999999999999997 999987763
|
|
| >cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=91.70 E-value=1 Score=40.22 Aligned_cols=158 Identities=17% Similarity=0.135 Sum_probs=80.4
Q ss_pred CCCcCCCCccEEEEeecCCCCccccCCCch-HHHHHHHHHHHHHHHhC-CCCccEEEEEeeCC-hHHHHHHHHHcCccce
Q psy9039 43 PPSVPVGVQHGVIVENMHDVPYVLEAESGP-EITANMTRLCAEIRKVL-PPSVPVGVQILSGC-NKAALATAQAAGLDFI 119 (251)
Q Consensus 43 ~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp-~i~aa~~~~i~~vr~~~-~~~~P~Gvn~~~N~-~~~~~~ia~a~g~~Fi 119 (251)
+.|.+.|+ |.|++ |+|-+.+. ... .....-...++++++.. +. .++..++-.+- ....+..+...|.+++
T Consensus 27 ~~L~~~GV-d~IEv----G~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~l~~a~~~gv~~i 99 (266)
T cd07944 27 RALAAAGI-DYVEI----GYRSSPEK-EFKGKSAFCDDEFLRRLLGDSKGN-TKIAVMVDYGNDDIDLLEPASGSVVDMI 99 (266)
T ss_pred HHHHHCCC-CEEEe----ecCCCCcc-ccCCCccCCCHHHHHHHHhhhccC-CEEEEEECCCCCCHHHHHHHhcCCcCEE
Confidence 56889999 99975 77765431 110 00000012333343332 12 47777764431 1345666666777888
Q ss_pred ecccccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHhhccCCCCCCcccHHHHHHHhhhccccEEEecCCCCCC
Q psy9039 120 RAESFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSSHAITADVDITETAKAASFFLSDGLIITGNATGD 199 (251)
Q Consensus 120 r~~~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~~~~~D~v~VTG~~~g~ 199 (251)
|... ... -.....+..++.++.|. .+.+ ......- .+.+.+.+.++.+..+|+|.+.+.=+- |.
T Consensus 100 ri~~----~~~----~~~~~~~~i~~ak~~G~-~v~~----~~~~a~~--~~~~~~~~~~~~~~~~g~~~i~l~DT~-G~ 163 (266)
T cd07944 100 RVAF----HKH----EFDEALPLIKAIKEKGY-EVFF----NLMAISG--YSDEELLELLELVNEIKPDVFYIVDSF-GS 163 (266)
T ss_pred EEec----ccc----cHHHHHHHHHHHHHCCC-eEEE----EEEeecC--CCHHHHHHHHHHHHhCCCCEEEEecCC-CC
Confidence 8641 110 12235556667777765 2222 1111111 234556666666665789998775432 22
Q ss_pred -CC-CH-HHHHHHHhcCCCCEEEecCC
Q psy9039 200 -PA-DV-SQLMSVKNAVDLPILIGSGV 223 (251)
Q Consensus 200 -~~-~~-~~l~~vr~~~~~PV~vG~GI 223 (251)
.| .. ++++.+|+..+..+-+|+=.
T Consensus 164 ~~P~~v~~lv~~l~~~~~~~~~i~~H~ 190 (266)
T cd07944 164 MYPEDIKRIISLLRSNLDKDIKLGFHA 190 (266)
T ss_pred CCHHHHHHHHHHHHHhcCCCceEEEEe
Confidence 22 23 56778887765113445544
|
This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t |
| >PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=91.57 E-value=0.53 Score=42.29 Aligned_cols=153 Identities=12% Similarity=0.115 Sum_probs=81.0
Q ss_pred CcCCCCccEEEEe-----ecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCcc-EEEEE----e-eCChHHHHHHHHH
Q psy9039 45 SVPVGVQHGVIVE-----NMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVP-VGVQI----L-SGCNKAALATAQA 113 (251)
Q Consensus 45 l~~~Gv~D~i~ie-----N~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P-~Gvn~----~-~N~~~~~~~ia~a 113 (251)
++++|+ |+|.+- +.+|.| | -++++..-|..-++.+++.++ .| +.+.+ | .++ ...+.-+
T Consensus 31 ~e~aG~-d~i~vGds~~~~~lG~~--D---t~~vtl~em~~h~~~V~r~~~--~p~vvaD~pfg~y~~~~-~~av~~a-- 99 (264)
T PRK00311 31 FDEAGV-DVILVGDSLGMVVLGYD--S---TLPVTLDDMIYHTKAVARGAP--RALVVADMPFGSYQASP-EQALRNA-- 99 (264)
T ss_pred HHHcCC-CEEEECHHHHHHHcCCC--C---CCCcCHHHHHHHHHHHHhcCC--CCcEEEeCCCCCccCCH-HHHHHHH--
Confidence 467799 999864 233433 3 368888889999999988877 55 44433 2 111 1101100
Q ss_pred cCccceecccccccccCCCceeecCcchhHHHHHhcCCCcchhhhh--hHhhccCCC------CCCcccHHHHHHHhh--
Q psy9039 114 AGLDFIRAESFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTD--IKKKHSSHA------ITADVDITETAKAAS-- 183 (251)
Q Consensus 114 ~g~~Fir~~~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~--v~~k~~~~~------~~~~~~i~~~a~~a~-- 183 (251)
.++++. .|.+|+-..|..+..+.-+.+-...|.+++- +++++-... ..++.+..++.+.+.
T Consensus 100 --~r~~~~-------aGa~aVkiEdg~~~~~~I~al~~agIpV~gHiGL~pq~~~~~gg~~i~grt~~~a~~~i~ra~a~ 170 (264)
T PRK00311 100 --GRLMKE-------AGAHAVKLEGGEEVAETIKRLVERGIPVMGHLGLTPQSVNVLGGYKVQGRDEEAAEKLLEDAKAL 170 (264)
T ss_pred --HHHHHH-------hCCeEEEEcCcHHHHHHHHHHHHCCCCEeeeecccceeecccCCeeeecCCHHHHHHHHHHHHHH
Confidence 123221 3345555555433333222222235555431 133321000 012233455556664
Q ss_pred -hccccEEEecCCCCCCCCCHHHHHHHHhcCCCCEE-EecCC
Q psy9039 184 -FFLSDGLIITGNATGDPADVSQLMSVKNAVDLPIL-IGSGV 223 (251)
Q Consensus 184 -~~~~D~v~VTG~~~g~~~~~~~l~~vr~~~~~PV~-vG~GI 223 (251)
..|||++.+.+.. .+..+++.+.+++|+| +|.|-
T Consensus 171 ~eAGA~~i~lE~v~------~~~~~~i~~~l~iP~igiGaG~ 206 (264)
T PRK00311 171 EEAGAFALVLECVP------AELAKEITEALSIPTIGIGAGP 206 (264)
T ss_pred HHCCCCEEEEcCCC------HHHHHHHHHhCCCCEEEeccCC
Confidence 2699999997652 2577888888999986 44444
|
|
| >PRK11320 prpB 2-methylisocitrate lyase; Provisional | Back alignment and domain information |
|---|
Probab=91.44 E-value=1.4 Score=40.10 Aligned_cols=64 Identities=16% Similarity=0.194 Sum_probs=42.3
Q ss_pred HHHHHHHhh-h--ccccEEEecCCCCCCCCCHHHHHHHHhcCCCCEE---EecCCCh-HhHHHhhc--CCEEEEeceE
Q psy9039 175 ITETAKAAS-F--FLSDGLIITGNATGDPADVSQLMSVKNAVDLPIL---IGSGVTS-DNVEHYMT--ADALIIGSHF 243 (251)
Q Consensus 175 i~~~a~~a~-~--~~~D~v~VTG~~~g~~~~~~~l~~vr~~~~~PV~---vG~GI~~-~~v~~~~~--ADGvIVGS~~ 243 (251)
+++..+.+. + .|||++.+.|.+ +.+.++++.+..+.|++ ..+|-+| -+++++.+ ..-++.|+..
T Consensus 165 ~deAI~Ra~aY~eAGAD~ifi~~~~-----~~~~i~~~~~~~~~Pl~~n~~~~~~~p~~s~~~L~~lGv~~v~~~~~~ 237 (292)
T PRK11320 165 LDAAIERAQAYVEAGADMIFPEAMT-----ELEMYRRFADAVKVPILANITEFGATPLFTTEELASAGVAMVLYPLSA 237 (292)
T ss_pred HHHHHHHHHHHHHcCCCEEEecCCC-----CHHHHHHHHHhcCCCEEEEeccCCCCCCCCHHHHHHcCCcEEEEChHH
Confidence 556666665 3 599999998754 47788888888889983 3345333 23444443 7777777543
|
|
| >TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase | Back alignment and domain information |
|---|
Probab=91.42 E-value=0.77 Score=41.89 Aligned_cols=178 Identities=15% Similarity=0.183 Sum_probs=91.5
Q ss_pred cCCCCccEEEEe------ecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEE---eeCChHHHHHH--HHHc
Q psy9039 46 VPVGVQHGVIVE------NMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQI---LSGCNKAALAT--AQAA 114 (251)
Q Consensus 46 ~~~Gv~D~i~ie------N~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~---~~N~~~~~~~i--a~a~ 114 (251)
++.|+ +++.+. ..+|+| | .|-.+..-|...++++.+.++ +|+-+.. |-|..-....+ -...
T Consensus 33 e~aGf-~ai~~sg~~~~as~lG~p--D---~g~l~~~e~~~~~~~I~~~~~--lPv~aD~dtGyG~~~~v~r~V~~~~~a 104 (294)
T TIGR02319 33 QQAGF-PAVHMTGSGTSASMLGLP--D---LGFTSVSEQAINAKNIVLAVD--VPVIMDADAGYGNAMSVWRATREFERV 104 (294)
T ss_pred HHcCC-CEEEecHHHHHHHHcCCC--C---cCCCCHHHHHHHHHHHHhccC--CCEEEECCCCCCCcHHHHHHHHHHHHc
Confidence 56799 999763 335554 2 256677777888888888888 8988864 33331111111 1112
Q ss_pred Cccceeccccc-ccccC---CCceeecC--cchhHHHHHhcCCCcchhhhhhHhhccCCCCCCcccHHHHHHHhh-h--c
Q psy9039 115 GLDFIRAESFV-FGHMA---DEGLMNAQ--AGPLLRYRKQIGADNVLVFTDIKKKHSSHAITADVDITETAKAAS-F--F 185 (251)
Q Consensus 115 g~~Fir~~~~~-~~~~~---~~Gli~~d--a~e~~~~r~~l~~~~i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~-~--~ 185 (251)
|+.-+...-.+ ....| ...++..+ ...+...++.....++.|++..... ....+++..+.+. + .
T Consensus 105 Gaagi~IEDq~~pK~cg~~~~k~lv~~ee~~~kI~Aa~~A~~~~d~~I~ARTDa~-------~~~g~deaI~Ra~aY~eA 177 (294)
T TIGR02319 105 GIVGYHLEDQVNPKRCGHLEGKRLISTEEMTGKIEAAVEAREDEDFTIIARTDAR-------ESFGLDEAIRRSREYVAA 177 (294)
T ss_pred CCeEEEEECCCCccccCCCCCccccCHHHHHHHHHHHHHhccCCCeEEEEEeccc-------ccCCHHHHHHHHHHHHHh
Confidence 32222221000 00011 00111111 1112222222222345555432211 1124566666665 3 5
Q ss_pred cccEEEecCCCCCCCCCHHHHHHHHhcCCCCE---EEecCCCh-HhHHHhhc--CCEEEEeceE
Q psy9039 186 LSDGLIITGNATGDPADVSQLMSVKNAVDLPI---LIGSGVTS-DNVEHYMT--ADALIIGSHF 243 (251)
Q Consensus 186 ~~D~v~VTG~~~g~~~~~~~l~~vr~~~~~PV---~vG~GI~~-~~v~~~~~--ADGvIVGS~~ 243 (251)
|+|++.+.|.. +.+.++++.+.++.|+ ++.+|-+| -++.++.+ ..-++.|+.+
T Consensus 178 GAD~ifi~~~~-----~~~ei~~~~~~~~~P~~~nv~~~~~~p~~s~~eL~~lG~~~v~~~~~~ 236 (294)
T TIGR02319 178 GADCIFLEAML-----DVEEMKRVRDEIDAPLLANMVEGGKTPWLTTKELESIGYNLAIYPLSG 236 (294)
T ss_pred CCCEEEecCCC-----CHHHHHHHHHhcCCCeeEEEEecCCCCCCCHHHHHHcCCcEEEEcHHH
Confidence 99999998643 4677888888888887 44444443 45666654 8888887654
|
This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization. |
| >cd04824 eu_ALAD_PBGS_cysteine_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll | Back alignment and domain information |
|---|
Probab=91.32 E-value=3.4 Score=37.92 Aligned_cols=41 Identities=17% Similarity=0.220 Sum_probs=27.8
Q ss_pred HHHHHHHhhh---ccccEEEecCCCCCCCCCHHHHHHHHhcC-CCCEEE
Q psy9039 175 ITETAKAASF---FLSDGLIITGNATGDPADVSQLMSVKNAV-DLPILI 219 (251)
Q Consensus 175 i~~~a~~a~~---~~~D~v~VTG~~~g~~~~~~~l~~vr~~~-~~PV~v 219 (251)
..+..+.+.. -|+|.+.|- .+ -+-++.|+++|+.+ ++||.+
T Consensus 224 ~~eAlre~~~D~~EGAD~lMVK---Pa-l~YLDIi~~~k~~~~~~Pvaa 268 (320)
T cd04824 224 RGLALRAVERDVSEGADMIMVK---PG-TPYLDIVREAKDKHPDLPLAV 268 (320)
T ss_pred HHHHHHHHHhhHHhCCCEEEEc---CC-chHHHHHHHHHHhccCCCEEE
Confidence 3344455442 599999883 21 12368899999999 999885
|
This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. The eukaryotic PBGSs represented by this model, which contain a cysteine-rich zinc binding motif (DXCXCX(Y/F)X3G(H/Q)CG), require zinc for their activity, they |
| >COG0646 MetH Methionine synthase I (cobalamin-dependent), methyltransferase domain [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=91.26 E-value=0.67 Score=42.25 Aligned_cols=69 Identities=14% Similarity=0.172 Sum_probs=48.7
Q ss_pred CCCCcchHHHHHHHHHhhCCCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCC
Q psy9039 24 GPEITANMTRLCAEIRKVLPPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGC 103 (251)
Q Consensus 24 ~P~~~~~~~~i~~~a~~~a~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~ 103 (251)
+|++..|++++.++-++.++.|.++|+ |+++||.++|. .-..+....++++.++.....|+-+..-..+
T Consensus 131 ~~~~~v~fd~l~~ay~eq~~~Li~gG~-D~iLiET~~D~----------l~~KaA~~a~~~~~~~~~~~LPv~~s~Ti~~ 199 (311)
T COG0646 131 SPDFAVTFDELVEAYREQVEGLIDGGA-DLILIETIFDT----------LNAKAAVFAAREVFEELGVRLPVMISGTITD 199 (311)
T ss_pred CCcccccHHHHHHHHHHHHHHHHhCCC-cEEEEehhccH----------HHHHHHHHHHHHHHHhcCCcccEEEEEEEec
Confidence 343456899999999999999999999 99999998854 2333344445555443332258888776654
|
|
| >PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin) | Back alignment and domain information |
|---|
Probab=91.18 E-value=0.27 Score=37.71 Aligned_cols=67 Identities=18% Similarity=0.161 Sum_probs=44.3
Q ss_pred HHHHHHHhhhccccEEEecCCCCCCCC-CHHHHHHHHhcC-CCCEEEecCC-C--hHhHHHh-hcCCEEEEec
Q psy9039 175 ITETAKAASFFLSDGLIITGNATGDPA-DVSQLMSVKNAV-DLPILIGSGV-T--SDNVEHY-MTADALIIGS 241 (251)
Q Consensus 175 i~~~a~~a~~~~~D~v~VTG~~~g~~~-~~~~l~~vr~~~-~~PV~vG~GI-~--~~~v~~~-~~ADGvIVGS 241 (251)
.+++.+......+|.+++|...+.... ..+.++.+|+.. +.++++||.. | ++.+.+. ..+|.++.|-
T Consensus 40 ~~~l~~~~~~~~pd~V~iS~~~~~~~~~~~~l~~~~k~~~p~~~iv~GG~~~t~~~~~~l~~~~~~D~vv~Ge 112 (121)
T PF02310_consen 40 PEELVEALRAERPDVVGISVSMTPNLPEAKRLARAIKERNPNIPIVVGGPHATADPEEILREYPGIDYVVRGE 112 (121)
T ss_dssp HHHHHHHHHHTTCSEEEEEESSSTHHHHHHHHHHHHHTTCTTSEEEEEESSSGHHHHHHHHHHHTSEEEEEET
T ss_pred HHHHHHHHhcCCCcEEEEEccCcCcHHHHHHHHHHHHhcCCCCEEEEECCchhcChHHHhccCcCcceecCCC
Confidence 355555555568999999984333222 245666777765 6899999887 5 5655443 3389999884
|
Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A .... |
| >PF00121 TIM: Triosephosphate isomerase; InterPro: IPR000652 Triosephosphate isomerase (5 | Back alignment and domain information |
|---|
Probab=91.17 E-value=0.087 Score=46.71 Aligned_cols=31 Identities=23% Similarity=0.515 Sum_probs=26.9
Q ss_pred CCCEEEecCCChHhHHHhhc---CCEEEEeceEe
Q psy9039 214 DLPILIGSGVTSDNVEHYMT---ADALIIGSHFK 244 (251)
Q Consensus 214 ~~PV~vG~GI~~~~v~~~~~---ADGvIVGS~~~ 244 (251)
++||+-||+|+++|+.+++. .||+.||++=.
T Consensus 202 ~~~ILYGGSV~~~N~~~l~~~~~iDG~LVG~asl 235 (244)
T PF00121_consen 202 NIRILYGGSVNPENAAELLSQPDIDGVLVGGASL 235 (244)
T ss_dssp HSEEEEESSESTTTHHHHHTSTT-SEEEESGGGG
T ss_pred ceeEEECCcCCcccHHHHhcCCCCCEEEEchhhh
Confidence 69999999999999999984 99999998643
|
3.1.1 from EC) (TIM) [] is the glycolytic enzyme that catalyses the reversible interconversion of glyceraldehyde 3-phosphate and dihydroxyacetone phosphate. TIM plays an important role in several metabolic pathways and is essential for efficient energy production. It is present in eukaryotes as well as in prokaryotes. TIM is a dimer of identical subunits, each of which is made up of about 250 amino-acid residues. A glutamic acid residue is involved in the catalytic mechanism [, ]. The tertiary structure of TIM has eight beta/alpha motifs folded into a barrel structure. The TIM barrel fold occurs ubiquitously and is found in numerous other enzymes that can be involved in energy metabolism, macromolecule metabolism, or small molecule metabolism []. The sequence around the active site residue is perfectly conserved in all known TIM's. Deficiencies in TIM are associated with haemolytic anaemia coupled with a progressive, severe neurological disorder [].; GO: 0004807 triose-phosphate isomerase activity, 0008152 metabolic process; PDB: 2YPI_A 1YPI_A 1NEY_B 1NF0_B 1I45_A 7TIM_A 3YPI_B 2H6R_H 2Y63_A 1N55_A .... |
| >PRK15492 triosephosphate isomerase; Provisional | Back alignment and domain information |
|---|
Probab=91.12 E-value=0.28 Score=43.97 Aligned_cols=29 Identities=31% Similarity=0.689 Sum_probs=26.6
Q ss_pred CCCEEEecCCChHhHHHhhc---CCEEEEece
Q psy9039 214 DLPILIGSGVTSDNVEHYMT---ADALIIGSH 242 (251)
Q Consensus 214 ~~PV~vG~GI~~~~v~~~~~---ADGvIVGS~ 242 (251)
++||+-||+|+++|+.+++. .||+.||.+
T Consensus 212 ~irILYGGSV~~~N~~~l~~~~diDG~LvG~a 243 (260)
T PRK15492 212 DIPVFYGGSVNAENANELFGQPHIDGLFIGRS 243 (260)
T ss_pred ceeEEEcCccCHHHHHHHhcCCCCCEEEeehh
Confidence 58999999999999999974 999999965
|
|
| >cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family | Back alignment and domain information |
|---|
Probab=91.04 E-value=6.2 Score=33.63 Aligned_cols=58 Identities=21% Similarity=0.192 Sum_probs=37.8
Q ss_pred HHHHHHHhhhccccEEEe-cCCCCCCCCCHHHHHHHHhc--CCCCEEEecCC-ChHhHHHhhc
Q psy9039 175 ITETAKAASFFLSDGLII-TGNATGDPADVSQLMSVKNA--VDLPILIGSGV-TSDNVEHYMT 233 (251)
Q Consensus 175 i~~~a~~a~~~~~D~v~V-TG~~~g~~~~~~~l~~vr~~--~~~PV~vG~GI-~~~~v~~~~~ 233 (251)
+...++.+...|+|.+=+ ||...+ ..+++.++.+++. ..+||.+.||| |.+++.+++.
T Consensus 133 i~~a~ria~e~GaD~IKTsTG~~~~-~at~~~v~~~~~~~~~~v~ik~aGGikt~~~~l~~~~ 194 (203)
T cd00959 133 IIKACEIAIEAGADFIKTSTGFGPG-GATVEDVKLMKEAVGGRVGVKAAGGIRTLEDALAMIE 194 (203)
T ss_pred HHHHHHHHHHhCCCEEEcCCCCCCC-CCCHHHHHHHHHHhCCCceEEEeCCCCCHHHHHHHHH
Confidence 333344444579999866 666432 3445554444444 46999999999 6888888875
|
DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction. |
| >PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=90.98 E-value=1.7 Score=38.84 Aligned_cols=159 Identities=16% Similarity=0.117 Sum_probs=83.5
Q ss_pred HHhhCCCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHHHHHHHHcCcc
Q psy9039 38 IRKVLPPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQAAGLD 117 (251)
Q Consensus 38 a~~~a~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g~~ 117 (251)
+++.++.+++.|+ |.|-| |.-. .+..-.+.|..+++.+++.++ +|+.+..+... +...++..+.|++
T Consensus 27 i~~~A~~~~~~GA-diIDV----g~~~-----~~~eE~~r~~~~v~~l~~~~~--~plsIDT~~~~-v~eaaL~~~~G~~ 93 (261)
T PRK07535 27 IQKLALKQAEAGA-DYLDV----NAGT-----AVEEEPETMEWLVETVQEVVD--VPLCIDSPNPA-AIEAGLKVAKGPP 93 (261)
T ss_pred HHHHHHHHHHCCC-CEEEE----CCCC-----CchhHHHHHHHHHHHHHHhCC--CCEEEeCCCHH-HHHHHHHhCCCCC
Confidence 3444455678999 99975 3221 122335568889999988777 79999987533 4334443333666
Q ss_pred ceecccccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHhhccCCCCCCcccHHHH---HHHhhhccc---cEEE
Q psy9039 118 FIRAESFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSSHAITADVDITET---AKAASFFLS---DGLI 191 (251)
Q Consensus 118 Fir~~~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~k~~~~~~~~~~~i~~~---a~~a~~~~~---D~v~ 191 (251)
.+-. ..|.- ....+..+..+++++.-|-+. ....|.|. +.+.+++.. ...+..+|+ +.++
T Consensus 94 iINs---------Is~~~-~~~~~~~~l~~~~g~~vv~m~---~~~~g~P~-t~~~~~~~l~~~v~~a~~~GI~~~~Iil 159 (261)
T PRK07535 94 LINS---------VSAEG-EKLEVVLPLVKKYNAPVVALT---MDDTGIPK-DAEDRLAVAKELVEKADEYGIPPEDIYI 159 (261)
T ss_pred EEEe---------CCCCC-ccCHHHHHHHHHhCCCEEEEe---cCCCCCCC-CHHHHHHHHHHHHHHHHHcCCCHhHEEE
Confidence 6553 11110 112356677777776333221 11224442 222222222 222334566 3332
Q ss_pred ecCCCC---CCCCC---HHHHHHHHhcC-CCCEEEe-----cCC
Q psy9039 192 ITGNAT---GDPAD---VSQLMSVKNAV-DLPILIG-----SGV 223 (251)
Q Consensus 192 VTG~~~---g~~~~---~~~l~~vr~~~-~~PV~vG-----~GI 223 (251)
=.|..+ +.... ++.++++|+.. ..|+++| ||+
T Consensus 160 DPgi~~~~~~~~~~~~~l~~i~~l~~~~pg~p~l~G~Sn~Sfgl 203 (261)
T PRK07535 160 DPLVLPLSAAQDAGPEVLETIRRIKELYPKVHTTCGLSNISFGL 203 (261)
T ss_pred eCCCCcccCChHHHHHHHHHHHHHHHhCCCCCEEEEeCCCccCC
Confidence 233321 11122 45566777765 7999998 777
|
|
| >cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain | Back alignment and domain information |
|---|
Probab=90.96 E-value=1.1 Score=41.75 Aligned_cols=40 Identities=18% Similarity=0.375 Sum_probs=33.9
Q ss_pred CCHHHHHHHHhcCCCCEEEecCC-ChHhHHHhhc--CCEEEEec
Q psy9039 201 ADVSQLMSVKNAVDLPILIGSGV-TSDNVEHYMT--ADALIIGS 241 (251)
Q Consensus 201 ~~~~~l~~vr~~~~~PV~vG~GI-~~~~v~~~~~--ADGvIVGS 241 (251)
..++.++++|+.+++||++- || +++.+..+.+ +|+++|.-
T Consensus 200 ~~~~~i~~l~~~~~~PvivK-gv~~~~dA~~a~~~G~d~I~vsn 242 (344)
T cd02922 200 LTWDDIKWLRKHTKLPIVLK-GVQTVEDAVLAAEYGVDGIVLSN 242 (344)
T ss_pred CCHHHHHHHHHhcCCcEEEE-cCCCHHHHHHHHHcCCCEEEEEC
Confidence 35788999999999999999 66 7888887776 99999975
|
FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit. |
| >PRK07107 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=90.95 E-value=0.6 Score=45.65 Aligned_cols=57 Identities=19% Similarity=0.193 Sum_probs=41.7
Q ss_pred hhccccEEEecCCCCCCCCC-HHHHHHHHhcCCCCEEEecC-C-ChHhHHHhhc--CCEEEEe
Q psy9039 183 SFFLSDGLIITGNATGDPAD-VSQLMSVKNAVDLPILIGSG-V-TSDNVEHYMT--ADALIIG 240 (251)
Q Consensus 183 ~~~~~D~v~VTG~~~g~~~~-~~~l~~vr~~~~~PV~vG~G-I-~~~~v~~~~~--ADGvIVG 240 (251)
...|+|.++|+ ...+.... .+.++++|+..+.++.++.| | |++++..++. ||++.||
T Consensus 251 v~aGvd~i~vd-~a~g~~~~~~~~i~~ir~~~~~~~~V~aGnV~t~e~a~~li~aGAd~I~vg 312 (502)
T PRK07107 251 VEAGADVLCID-SSEGYSEWQKRTLDWIREKYGDSVKVGAGNVVDREGFRYLAEAGADFVKVG 312 (502)
T ss_pred HHhCCCeEeec-CcccccHHHHHHHHHHHHhCCCCceEEeccccCHHHHHHHHHcCCCEEEEC
Confidence 34699999998 44344332 57899999987655544444 4 8999999996 9999994
|
|
| >TIGR02317 prpB methylisocitrate lyase | Back alignment and domain information |
|---|
Probab=90.49 E-value=0.83 Score=41.47 Aligned_cols=178 Identities=13% Similarity=0.156 Sum_probs=89.5
Q ss_pred cCCCCccEEEEe-----ecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEE---eeCCh-HHH-HHHHHHcC
Q psy9039 46 VPVGVQHGVIVE-----NMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQI---LSGCN-KAA-LATAQAAG 115 (251)
Q Consensus 46 ~~~Gv~D~i~ie-----N~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~---~~N~~-~~~-~~ia~a~g 115 (251)
++.|+ +++.+. +.+|.| | .|-.+..-|...++++.+.++ +|+-+.. |-|+. +.. ..--...|
T Consensus 30 e~aGf-~Ai~~sg~~~a~~lG~p--D---~g~lt~~e~~~~~~~I~~~~~--iPviaD~d~GyG~~~~v~~tv~~~~~aG 101 (285)
T TIGR02317 30 ERAGF-EAIYLSGAAVAASLGLP--D---LGITTLDEVAEDARRITRVTD--LPLLVDADTGFGEAFNVARTVREMEDAG 101 (285)
T ss_pred HHcCC-CEEEEcHHHHHHhCCCC--C---CCCCCHHHHHHHHHHHHhccC--CCEEEECCCCCCCHHHHHHHHHHHHHcC
Confidence 45688 888765 333432 2 255677777788888888888 8988864 33320 100 11111223
Q ss_pred ccceeccccc-ccccC---CCceeecC--cchhHHHHHhcCCCcchhhhhhHhhccCCCCCCcccHHHHHHHhh-h--cc
Q psy9039 116 LDFIRAESFV-FGHMA---DEGLMNAQ--AGPLLRYRKQIGADNVLVFTDIKKKHSSHAITADVDITETAKAAS-F--FL 186 (251)
Q Consensus 116 ~~Fir~~~~~-~~~~~---~~Gli~~d--a~e~~~~r~~l~~~~i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~-~--~~ 186 (251)
+.-+...-.+ ....| ...++..+ ...+...++.....+..|++..... ....+++..+.+. + .|
T Consensus 102 ~agi~IEDq~~pK~cgh~~g~~lv~~ee~~~kI~Aa~~a~~~~d~~IiARTDa~-------~~~g~deAI~Ra~ay~~AG 174 (285)
T TIGR02317 102 AAAVHIEDQVLPKRCGHLPGKELVSREEMVDKIAAAVDAKRDEDFVIIARTDAR-------AVEGLDAAIERAKAYVEAG 174 (285)
T ss_pred CeEEEEecCCCccccCCCCCccccCHHHHHHHHHHHHHhccCCCEEEEEEcCcc-------cccCHHHHHHHHHHHHHcC
Confidence 3222221000 00111 01111111 2222222222222234444422211 0123556666665 3 59
Q ss_pred ccEEEecCCCCCCCCCHHHHHHHHhcCCCCEE---EecCCCh-HhHHHhhc--CCEEEEeceE
Q psy9039 187 SDGLIITGNATGDPADVSQLMSVKNAVDLPIL---IGSGVTS-DNVEHYMT--ADALIIGSHF 243 (251)
Q Consensus 187 ~D~v~VTG~~~g~~~~~~~l~~vr~~~~~PV~---vG~GI~~-~~v~~~~~--ADGvIVGS~~ 243 (251)
+|.+.+.|.+ +.+.++++.+..+.|++ ..+|-+| -+++++.+ ..-++.|+.+
T Consensus 175 AD~vfi~g~~-----~~e~i~~~~~~i~~Pl~~n~~~~~~~p~~s~~eL~~lGv~~v~~~~~~ 232 (285)
T TIGR02317 175 ADMIFPEALT-----SLEEFRQFAKAVKVPLLANMTEFGKTPLFTADELREAGYKMVIYPVTA 232 (285)
T ss_pred CCEEEeCCCC-----CHHHHHHHHHhcCCCEEEEeccCCCCCCCCHHHHHHcCCcEEEEchHH
Confidence 9999998743 46778888888888983 4445444 34555554 7888887643
|
Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus. |
| >TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family | Back alignment and domain information |
|---|
Probab=90.45 E-value=0.86 Score=38.87 Aligned_cols=82 Identities=13% Similarity=0.056 Sum_probs=56.8
Q ss_pred hhhhhhHhhccCCC--CCCcccHHHHHHHhhhccccEEEecCCCCCCCCCH-HHHHHHHhcC---CCCEEEecCC-ChHh
Q psy9039 155 LVFTDIKKKHSSHA--ITADVDITETAKAASFFLSDGLIITGNATGDPADV-SQLMSVKNAV---DLPILIGSGV-TSDN 227 (251)
Q Consensus 155 ~i~a~v~~k~~~~~--~~~~~~i~~~a~~a~~~~~D~v~VTG~~~g~~~~~-~~l~~vr~~~---~~PV~vG~GI-~~~~ 227 (251)
.+++.+...+|... ...+.+.+++.+.+....+|.+++|-..+...+.. +.++++|+.. +++|++||.. +++
T Consensus 102 ~~v~~~l~~~G~~vi~LG~~vp~e~~v~~~~~~~pd~v~lS~~~~~~~~~~~~~i~~l~~~~~~~~v~i~vGG~~~~~~- 180 (197)
T TIGR02370 102 NIVVTMLRANGFDVIDLGRDVPIDTVVEKVKKEKPLMLTGSALMTTTMYGQKDINDKLKEEGYRDSVKFMVGGAPVTQD- 180 (197)
T ss_pred HHHHHHHHhCCcEEEECCCCCCHHHHHHHHHHcCCCEEEEccccccCHHHHHHHHHHHHHcCCCCCCEEEEEChhcCHH-
Confidence 55555555555333 35667888888888888999999998766554444 5677888873 4899999988 665
Q ss_pred HHHhhcCCEE
Q psy9039 228 VEHYMTADAL 237 (251)
Q Consensus 228 v~~~~~ADGv 237 (251)
.++.+.||+.
T Consensus 181 ~~~~~gad~~ 190 (197)
T TIGR02370 181 WADKIGADVY 190 (197)
T ss_pred HHHHhCCcEE
Confidence 4444457765
|
This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere. |
| >cd08205 RuBisCO_IV_RLP Ribulose bisphosphate carboxylase like proteins, Rubisco-Form IV | Back alignment and domain information |
|---|
Probab=90.45 E-value=7 Score=36.73 Aligned_cols=55 Identities=13% Similarity=-0.012 Sum_probs=38.9
Q ss_pred CCCcCCCCccEE-EEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeC
Q psy9039 43 PPSVPVGVQHGV-IVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSG 102 (251)
Q Consensus 43 ~~l~~~Gv~D~i-~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N 102 (251)
..+.++|+ |+| ..||..+.||... -+...+..+.+++..+++....++..|+-..
T Consensus 153 ~~l~~gGv-D~Ikdde~~ge~~~~~~----eER~~~v~~av~~a~~~TG~~~~y~~nit~~ 208 (367)
T cd08205 153 YELALGGI-DLIKDDELLADQPYAPF----EERVRACMEAVRRANEETGRKTLYAPNITGD 208 (367)
T ss_pred HHHHhcCC-CeeeccccccCcccCCH----HHHHHHHHHHHHHHHHhhCCcceEEEEcCCC
Confidence 55678999 999 5567778888753 4566677778888887766544677776543
|
Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions, like for example 2,3-diketo-5-methylthiopentyl-1-phosphate enolase or 5-methyl |
| >PF00809 Pterin_bind: Pterin binding enzyme This Prosite entry is a subset of the Pfam family; InterPro: IPR000489 The ~250-residue pterin-binding domain has been shown to adopt a (beta/alpha)8 barrel fold, which has the overall shape of a distorted cylinder | Back alignment and domain information |
|---|
Probab=90.36 E-value=3 Score=35.88 Aligned_cols=101 Identities=22% Similarity=0.209 Sum_probs=60.2
Q ss_pred HHHHhhCCCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHH-hCCCCccEEEEEeeCChHHHHHHHHHc
Q psy9039 36 AEIRKVLPPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRK-VLPPSVPVGVQILSGCNKAALATAQAA 114 (251)
Q Consensus 36 ~~a~~~a~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~-~~~~~~P~Gvn~~~N~~~~~~~ia~a~ 114 (251)
+.+++.++.+.+.|+ |.|-|-=+---|+..+. +..+-..-+..+++++++ ..+ +|+.+..+... +...++ ..
T Consensus 19 ~~a~~~a~~~~~~GA-diIDIg~~st~p~~~~v-~~~eE~~rl~~~l~~i~~~~~~--~plSIDT~~~~-v~~~aL--~~ 91 (210)
T PF00809_consen 19 DEAVKRAREQVEAGA-DIIDIGAESTRPGATPV-SEEEEMERLVPVLQAIREENPD--VPLSIDTFNPE-VAEAAL--KA 91 (210)
T ss_dssp HHHHHHHHHHHHTT--SEEEEESSTSSTTSSSS-HHHHHHHHHHHHHHHHHHHHTT--SEEEEEESSHH-HHHHHH--HH
T ss_pred HHHHHHHHHHHHhcC-CEEEecccccCCCCCcC-CHHHHHHHHHHHHHHHhccCCC--eEEEEECCCHH-HHHHHH--Hc
Confidence 455666788889999 99987333334555442 233344445556777776 445 79999998643 444444 44
Q ss_pred CccceecccccccccCCCceeecCcchhHHHHHhcCCCcc
Q psy9039 115 GLDFIRAESFVFGHMADEGLMNAQAGPLLRYRKQIGADNV 154 (251)
Q Consensus 115 g~~Fir~~~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i 154 (251)
|++++-.- .|+- +..+..+..+++++.-|
T Consensus 92 g~~~ind~---------~~~~--~~~~~~~l~a~~~~~vV 120 (210)
T PF00809_consen 92 GADIINDI---------SGFE--DDPEMLPLAAEYGAPVV 120 (210)
T ss_dssp TSSEEEET---------TTTS--SSTTHHHHHHHHTSEEE
T ss_pred CcceEEec---------cccc--ccchhhhhhhcCCCEEE
Confidence 78876641 1110 14567788888887333
|
It has eight alpha-helices stacked around the outside of an inner cylinder of parallel beta-strands. The pterin ring binds at the bottom of the (beta/alpha;)8 barrel in a polar cup-like region that is relatively solvent exposed and fairly negatively charged. The pterin ring is partially buried within the (beta/alpha)8 barrel. The pterin binding residues are highly conserved and include aspartate and asparagine residues located at the C terminus of the beta-strands of the barrel, which are predicted to form hydrogen bonds with the nitrogen and oxygen atoms of the pterin ring [, , ]. Some proteins known to contain a pterin-binding domain are listed below: Prokaryotic and eukaryotic B12-dependent methionine synthase (MetH) (2.1.1.13 from EC), a large, modular protein that catalyzes the transfer of a methyl group from methyltetrahydrofolate (CH3-H4folate) to Hcy to form methionine, using cobalamin as an intermediate methyl carrier. Prokaryotic and eukaryotic dihydropteroate synthase (DHPS) (2.5.1.15 from EC). It catalyzes the condensation of para-aminobenzoic acid (pABA) with 7,8- dihydropterin-pyrophosphate (DHPPP), eliminating pyrophosphate to form 7,8- dihydropteroate which is subsequently converted to tetrahydrofolate. Moorella thermoacetica 5-methyltetrahydrofolate corrinoid/iron sulphur protein methyltransferase (MeTr). It transfers the N5-methyl group from CH3-H4folate to a cob(I)amide centre in another protein, the corrinoid iron sulphur protein. ; GO: 0042558 pteridine-containing compound metabolic process; PDB: 2VP8_B 2BMB_A 2Y5S_B 2Y5J_A 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B .... |
| >PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase | Back alignment and domain information |
|---|
Probab=90.24 E-value=0.59 Score=43.69 Aligned_cols=56 Identities=23% Similarity=0.425 Sum_probs=40.7
Q ss_pred hccccEEEecCCCCCCCCC-HHHHHHHHhcC-CCCEEEecCCChHhHHHhhc--CCEEEEe
Q psy9039 184 FFLSDGLIITGNATGDPAD-VSQLMSVKNAV-DLPILIGSGVTSDNVEHYMT--ADALIIG 240 (251)
Q Consensus 184 ~~~~D~v~VTG~~~g~~~~-~~~l~~vr~~~-~~PV~vG~GI~~~~v~~~~~--ADGvIVG 240 (251)
..++|.+++-.++ |.... .+.++++|+.. ++||++|-=.|.+.+..++. ||++.||
T Consensus 118 ~agvD~ivID~a~-g~s~~~~~~ik~ik~~~~~~~viaGNV~T~e~a~~L~~aGad~vkVG 177 (352)
T PF00478_consen 118 EAGVDVIVIDSAH-GHSEHVIDMIKKIKKKFPDVPVIAGNVVTYEGAKDLIDAGADAVKVG 177 (352)
T ss_dssp HTT-SEEEEE-SS-TTSHHHHHHHHHHHHHSTTSEEEEEEE-SHHHHHHHHHTT-SEEEES
T ss_pred HcCCCEEEccccC-ccHHHHHHHHHHHHHhCCCceEEecccCCHHHHHHHHHcCCCEEEEe
Confidence 3699999998776 44333 47788999887 58988665339999999996 9999998
|
These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. |
| >cd02068 radical_SAM_B12_BD B12 binding domain_like associated with radical SAM domain | Back alignment and domain information |
|---|
Probab=90.15 E-value=0.95 Score=35.37 Aligned_cols=66 Identities=12% Similarity=0.141 Sum_probs=43.1
Q ss_pred cHHHHHHHhhh-ccccEEEecCCCCCCCCCHHHHHHHHhcC-CCCEEEecCC-C--hHhHHHhhc-CCEEEEe
Q psy9039 174 DITETAKAASF-FLSDGLIITGNATGDPADVSQLMSVKNAV-DLPILIGSGV-T--SDNVEHYMT-ADALIIG 240 (251)
Q Consensus 174 ~i~~~a~~a~~-~~~D~v~VTG~~~g~~~~~~~l~~vr~~~-~~PV~vG~GI-~--~~~v~~~~~-ADGvIVG 240 (251)
..++..+.... ...|.+++|..........+.++.+|+.. +.||++||.. | ++.+ .... +|.++.|
T Consensus 26 ~~~~~~~~~~~~~~pdiv~~S~~~~~~~~~~~~~~~ik~~~p~~~iv~GG~~~t~~p~~~-~~~~~~D~vv~G 97 (127)
T cd02068 26 SADDIVEDIKELLKPDVVGISLMTSAIYEALELAKIAKEVLPNVIVVVGGPHATFFPEEI-LEEPGVDFVVIG 97 (127)
T ss_pred CHHHHHHHHHHhcCCCEEEEeeccccHHHHHHHHHHHHHHCCCCEEEECCcchhhCHHHH-hcCCCCCEEEEC
Confidence 34444454443 57899999986544333346677888876 6888888877 4 4554 1223 9999988
|
This domain shows similarity with B12 (adenosylcobamide) binding domains found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase, but it lacks the signature motif Asp-X-His-X-X-Gly, which contains the histidine that acts as a cobalt ligand. The function of this domain remains unclear. |
| >PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=90.09 E-value=0.82 Score=41.38 Aligned_cols=66 Identities=21% Similarity=0.373 Sum_probs=44.3
Q ss_pred HHHHHHhhhccccEEEecCCCCCCCCCH-HHHHHHHhc---CCCCEEEecCCChHhHHHhhc--CCEEEEeceEe
Q psy9039 176 TETAKAASFFLSDGLIITGNATGDPADV-SQLMSVKNA---VDLPILIGSGVTSDNVEHYMT--ADALIIGSHFK 244 (251)
Q Consensus 176 ~~~a~~a~~~~~D~v~VTG~~~g~~~~~-~~l~~vr~~---~~~PV~vG~GI~~~~v~~~~~--ADGvIVGS~~~ 244 (251)
.+.+..+..+|+|.+-.-... +.++ +.+..+++. .++.+.+.||||.+|++++.. +|.+.+|+-..
T Consensus 192 leea~~a~~agaDiI~LDn~~---~e~l~~~v~~l~~~~~~~~~~leaSGGI~~~ni~~yA~tGvD~Is~galt~ 263 (278)
T PRK08385 192 LEDALKAAKAGADIIMLDNMT---PEEIREVIEALKREGLRERVKIEVSGGITPENIEEYAKLDVDVISLGALTH 263 (278)
T ss_pred HHHHHHHHHcCcCEEEECCCC---HHHHHHHHHHHHhcCcCCCEEEEEECCCCHHHHHHHHHcCCCEEEeChhhc
Confidence 344555556799987665442 1122 223334442 246799999999999999997 99999998553
|
|
| >PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=89.84 E-value=0.81 Score=42.49 Aligned_cols=54 Identities=24% Similarity=0.246 Sum_probs=41.3
Q ss_pred ccccEEEecCCCCCCCCC-HHHHHHHHhcC-CCCEEEecCC-ChHhHHHhhc--CCEEEEe
Q psy9039 185 FLSDGLIITGNATGDPAD-VSQLMSVKNAV-DLPILIGSGV-TSDNVEHYMT--ADALIIG 240 (251)
Q Consensus 185 ~~~D~v~VTG~~~g~~~~-~~~l~~vr~~~-~~PV~vG~GI-~~~~v~~~~~--ADGvIVG 240 (251)
.++|++++==++ |.... .+.++++|+.. +++|+ +|-| |++.+++++. ||++-||
T Consensus 121 ~g~D~iviD~Ah-Ghs~~~i~~ik~ik~~~P~~~vI-aGNV~T~e~a~~Li~aGAD~vKVG 179 (346)
T PRK05096 121 PALNFICIDVAN-GYSEHFVQFVAKAREAWPDKTIC-AGNVVTGEMVEELILSGADIVKVG 179 (346)
T ss_pred CCCCEEEEECCC-CcHHHHHHHHHHHHHhCCCCcEE-EecccCHHHHHHHHHcCCCEEEEc
Confidence 589999885554 44433 57899999886 67755 5566 9999999996 9999887
|
|
| >COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=89.82 E-value=0.86 Score=37.21 Aligned_cols=65 Identities=17% Similarity=0.165 Sum_probs=45.0
Q ss_pred ccHHHHHHHhhhccccEEEecCCCCCCCCCH-HHHHHHHhcC--CCCEEEecCC-ChHhHHHhhc--CCEEE
Q psy9039 173 VDITETAKAASFFLSDGLIITGNATGDPADV-SQLMSVKNAV--DLPILIGSGV-TSDNVEHYMT--ADALI 238 (251)
Q Consensus 173 ~~i~~~a~~a~~~~~D~v~VTG~~~g~~~~~-~~l~~vr~~~--~~PV~vG~GI-~~~~v~~~~~--ADGvI 238 (251)
.+-+++++.|...-+|++++|+-..+..... ..++.+|+.- ++.| ++||+ .+++..++.+ .|+++
T Consensus 50 ~tp~e~v~aA~~~dv~vIgvSsl~g~h~~l~~~lve~lre~G~~~i~v-~~GGvip~~d~~~l~~~G~~~if 120 (143)
T COG2185 50 QTPEEAVRAAVEEDVDVIGVSSLDGGHLTLVPGLVEALREAGVEDILV-VVGGVIPPGDYQELKEMGVDRIF 120 (143)
T ss_pred CCHHHHHHHHHhcCCCEEEEEeccchHHHHHHHHHHHHHHhCCcceEE-eecCccCchhHHHHHHhCcceee
Confidence 3456777777667899999999876555443 5677788775 4554 45555 7888777774 77664
|
|
| >cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase | Back alignment and domain information |
|---|
Probab=89.50 E-value=1 Score=38.98 Aligned_cols=75 Identities=15% Similarity=0.164 Sum_probs=50.7
Q ss_pred hhhhhhHhhccCCC--CCCcccHHHHHHHhhhccccEEEecCCCCCCCCCH-HHHHHHHhcC-CCCEEEecCC-ChHhHH
Q psy9039 155 LVFTDIKKKHSSHA--ITADVDITETAKAASFFLSDGLIITGNATGDPADV-SQLMSVKNAV-DLPILIGSGV-TSDNVE 229 (251)
Q Consensus 155 ~i~a~v~~k~~~~~--~~~~~~i~~~a~~a~~~~~D~v~VTG~~~g~~~~~-~~l~~vr~~~-~~PV~vG~GI-~~~~v~ 229 (251)
.+++.....+|... ...+.+.+++.+.+....+|.+++|...+...+.. +.++++++.. ++||++||.. +.+-+.
T Consensus 106 ~iv~~~l~~~G~~Vi~LG~~vp~e~~v~~~~~~~~~~V~lS~~~~~~~~~~~~~i~~L~~~~~~~~i~vGG~~~~~~~~~ 185 (213)
T cd02069 106 NLVGVILSNNGYEVIDLGVMVPIEKILEAAKEHKADIIGLSGLLVPSLDEMVEVAEEMNRRGIKIPLLIGGAATSRKHTA 185 (213)
T ss_pred HHHHHHHHhCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEccchhccHHHHHHHHHHHHhcCCCCeEEEEChhcCHHHHh
Confidence 44444444444332 34567888888888888999999998766444444 5577777664 7999999988 444444
|
This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy). |
| >PRK14905 triosephosphate isomerase/PTS system glucose/sucrose-specific transporter subunit IIB; Provisional | Back alignment and domain information |
|---|
Probab=89.46 E-value=0.37 Score=45.09 Aligned_cols=32 Identities=28% Similarity=0.532 Sum_probs=28.7
Q ss_pred CCCEEEecCCChHhHHHhhc---CCEEEEeceEee
Q psy9039 214 DLPILIGSGVTSDNVEHYMT---ADALIIGSHFKQ 245 (251)
Q Consensus 214 ~~PV~vG~GI~~~~v~~~~~---ADGvIVGS~~~~ 245 (251)
++||+-||+|+++|+.+++. .||+-||++-.+
T Consensus 213 ~v~ILYGGSV~~~N~~~l~~~~~iDG~LVG~asl~ 247 (355)
T PRK14905 213 KIPVLYGGSVNLENANELIMKPHIDGLFIGRSAWD 247 (355)
T ss_pred ceeEEEeCcCCHHHHHHHhcCCCCCEEEechhhcc
Confidence 48999999999999999884 999999998664
|
|
| >PLN02424 ketopantoate hydroxymethyltransferase | Back alignment and domain information |
|---|
Probab=89.36 E-value=2 Score=39.76 Aligned_cols=158 Identities=12% Similarity=0.135 Sum_probs=81.6
Q ss_pred CCCcCCCCccEEEEeecCCC---CccccCCCchHHHHHHHHHHHHHHHhCCCCccEEE-EE----eeCChHHHHHHHHHc
Q psy9039 43 PPSVPVGVQHGVIVENMHDV---PYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGV-QI----LSGCNKAALATAQAA 114 (251)
Q Consensus 43 ~~l~~~Gv~D~i~ieN~~~~---Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gv-n~----~~N~~~~~~~ia~a~ 114 (251)
+.+.++|+ |.|.+-.-+++ =|.+ --+++.+-|..-++.|++..+ .|+.+ .+ |--++..++.-|
T Consensus 49 ~i~d~aGv-D~ILVGDSlgmv~lG~~~---T~~Vtld~mi~H~~aV~Rga~--~a~vVaDmPfgSY~~s~e~av~nA--- 119 (332)
T PLN02424 49 VHVDSAGI-DVCLVGDSAAMVVHGHDT---TLPITLDEMLVHCRAVARGAN--RPLLVGDLPFGSYESSTDQAVESA--- 119 (332)
T ss_pred HHHHHcCC-CEEEECCcHHHHhcCCCC---CCCcCHHHHHHHHHHHhccCC--CCEEEeCCCCCCCCCCHHHHHHHH---
Confidence 34578999 99998533322 1222 126788889999999998877 67776 22 211212222111
Q ss_pred CccceecccccccccCCCceeecCc-chhHHHHHhcCCCcchhhhh--hHhhccCCC-----C-CCcccHHHHHHHhh--
Q psy9039 115 GLDFIRAESFVFGHMADEGLMNAQA-GPLLRYRKQIGADNVLVFTD--IKKKHSSHA-----I-TADVDITETAKAAS-- 183 (251)
Q Consensus 115 g~~Fir~~~~~~~~~~~~Gli~~da-~e~~~~r~~l~~~~i~i~a~--v~~k~~~~~-----~-~~~~~i~~~a~~a~-- 183 (251)
.++++. .|.+++=..+. .+....-+.+-...|.+++- +++++-..+ . .+.....++.+.|.
T Consensus 120 -~rl~~e-------aGa~aVKlEGg~~~~~~~I~~l~~~GIPV~gHiGLtPQs~~~lGGykvqGr~~~~a~~li~dA~al 191 (332)
T PLN02424 120 -VRMLKE-------GGMDAVKLEGGSPSRVTAAKAIVEAGIAVMGHVGLTPQAISVLGGFRPQGRTAESAVKVVETALAL 191 (332)
T ss_pred -HHHHHH-------hCCcEEEECCCcHHHHHHHHHHHHcCCCEEEeecccceeehhhcCccccCCCHHHHHHHHHHHHHH
Confidence 234332 12222222222 22222222222345666542 233321111 0 11123334445554
Q ss_pred -hccccEEEecCCCCCCCCCHHHHHHHHhcCCCCEE-EecCC
Q psy9039 184 -FFLSDGLIITGNATGDPADVSQLMSVKNAVDLPIL-IGSGV 223 (251)
Q Consensus 184 -~~~~D~v~VTG~~~g~~~~~~~l~~vr~~~~~PV~-vG~GI 223 (251)
..||+++++-|.- .++.+++.+.+++|+| +|.|-
T Consensus 192 e~AGAf~ivLE~Vp------~~la~~It~~l~IPtIGIGAG~ 227 (332)
T PLN02424 192 QEAGCFAVVLECVP------APVAAAITSALQIPTIGIGAGP 227 (332)
T ss_pred HHcCCcEEEEcCCc------HHHHHHHHHhCCCCEEeecCCC
Confidence 3699999987652 3367788888999986 44554
|
|
| >PRK02261 methylaspartate mutase subunit S; Provisional | Back alignment and domain information |
|---|
Probab=89.17 E-value=1.7 Score=34.99 Aligned_cols=54 Identities=15% Similarity=0.121 Sum_probs=41.6
Q ss_pred CCcccHHHHHHHhhhccccEEEecCCCCCCCCCH-HHHHHHHhc-C-CCCEEEecCC
Q psy9039 170 TADVDITETAKAASFFLSDGLIITGNATGDPADV-SQLMSVKNA-V-DLPILIGSGV 223 (251)
Q Consensus 170 ~~~~~i~~~a~~a~~~~~D~v~VTG~~~g~~~~~-~~l~~vr~~-~-~~PV~vG~GI 223 (251)
..+.+.+++.+.+....+|.+++|-..+...... +.+.++++. . ++++++||.+
T Consensus 38 G~~vp~e~i~~~a~~~~~d~V~lS~~~~~~~~~~~~~~~~L~~~~~~~~~i~vGG~~ 94 (137)
T PRK02261 38 GVMTSQEEFIDAAIETDADAILVSSLYGHGEIDCRGLREKCIEAGLGDILLYVGGNL 94 (137)
T ss_pred CCCCCHHHHHHHHHHcCCCEEEEcCccccCHHHHHHHHHHHHhcCCCCCeEEEECCC
Confidence 4557888998888888999999998765444333 567778776 3 7899999998
|
|
| >TIGR01740 pyrF orotidine 5'-phosphate decarboxylase, subfamily 1 | Back alignment and domain information |
|---|
Probab=89.08 E-value=3.7 Score=35.29 Aligned_cols=161 Identities=16% Similarity=0.183 Sum_probs=78.9
Q ss_pred CccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChH----HHHHHHHHcCccceeccccc
Q psy9039 50 VQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNK----AALATAQAAGLDFIRAESFV 125 (251)
Q Consensus 50 v~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~----~~~~ia~a~g~~Fir~~~~~ 125 (251)
+ |.+.+ |.|+-+. -|+ +.++++|+... ++-+.+=..+-. .....+...|++++-++.+.
T Consensus 24 v-~~iKi----g~~l~~~--~G~-------~~v~~l~~~~~---~v~lD~K~~Dig~t~~~~~~~~~~~gad~vTvh~~~ 86 (213)
T TIGR01740 24 I-EVIKV----GIDLLLD--GGD-------KIIDELAKLNK---LIFLDLKFADIPNTVKLQYESKIKQGADMVNVHGVA 86 (213)
T ss_pred C-cEEEE----CHHHHHh--cCH-------HHHHHHHHcCC---CEEEEEeecchHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 7 77754 7777653 465 56777776533 555666444411 11222345677777765333
Q ss_pred ccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHhhccCCCC-CCcccHHHHHHHhhhccccEEEecCCCCCCCCCHH
Q psy9039 126 FGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSSHAI-TADVDITETAKAASFFLSDGLIITGNATGDPADVS 204 (251)
Q Consensus 126 ~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~k~~~~~~-~~~~~i~~~a~~a~~~~~D~v~VTG~~~g~~~~~~ 204 (251)
|. + -...+.++.++.+ ..+.+++.....-+..+. ...+...+.++.+...|.++++ | ..+
T Consensus 87 g~----~-----~l~~~~~~~~~~~-~~v~~v~~lss~~~~~~~~~~~~~v~~~a~~~~~~g~~g~v-~--------~~~ 147 (213)
T TIGR01740 87 GS----E-----SVEAAKEAASEGG-RGLLAVTELTSMGSLDYGEDTMEKVLEYAKEAKAFGLDGPV-C--------SAE 147 (213)
T ss_pred CH----H-----HHHHHHHHhhcCC-CeEEEEEcCCCCChhhhCcCHHHHHHHHHHHhhhcCCeEEE-e--------CHH
Confidence 31 0 0222333333333 234444322211000000 0001222223333334666653 2 244
Q ss_pred HHHHHHhcCCCCEEEecCCChH---hH--------HHhhc--CCEEEEeceEeec
Q psy9039 205 QLMSVKNAVDLPILIGSGVTSD---NV--------EHYMT--ADALIIGSHFKQG 246 (251)
Q Consensus 205 ~l~~vr~~~~~PV~vG~GI~~~---~v--------~~~~~--ADGvIVGS~~~~~ 246 (251)
.+.++|+..+--+++-.||.++ .. .++.+ ||-+|+||++-+.
T Consensus 148 ~~~~ir~~~~~~~~vtPGI~~~g~~~~dq~~~~~~~~~~~~Gad~iVvGr~I~~~ 202 (213)
T TIGR01740 148 EAKEIRKFTGDFLILTPGIRLQSKGADDQQRVVTLEDAKEAGADVIIVGRGIYAA 202 (213)
T ss_pred HHHHHHHhcCCceEEeCCcCCCCCCcCCccccCCHHHHHHcCCCEEEEChhhcCC
Confidence 5666666653246778889644 22 45554 9999999998653
|
This model represents orotidine 5'-monophosphate decarboxylase, the PyrF protein of pyrimidine nucleotide biosynthesis. In many eukaryotes, the region hit by this model is part of a multifunctional protein. |
| >PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2 | Back alignment and domain information |
|---|
Probab=89.07 E-value=0.55 Score=39.34 Aligned_cols=64 Identities=22% Similarity=0.338 Sum_probs=41.5
Q ss_pred HHHHHhhhccccEEEecCCCCCCCCCH-HHHHHHHhcC-CCCEEEecCCChHhHHHhhc--CCEEEEeceE
Q psy9039 177 ETAKAASFFLSDGLIITGNATGDPADV-SQLMSVKNAV-DLPILIGSGVTSDNVEHYMT--ADALIIGSHF 243 (251)
Q Consensus 177 ~~a~~a~~~~~D~v~VTG~~~g~~~~~-~~l~~vr~~~-~~PV~vG~GI~~~~v~~~~~--ADGvIVGS~~ 243 (251)
+.++.+...++|.+-.--.. +.++ +.++++++.. .+-+.+.||||++|+.++.. +|.+.+||..
T Consensus 91 ee~~ea~~~g~d~I~lD~~~---~~~~~~~v~~l~~~~~~v~ie~SGGI~~~ni~~ya~~gvD~isvg~~~ 158 (169)
T PF01729_consen 91 EEAEEALEAGADIIMLDNMS---PEDLKEAVEELRELNPRVKIEASGGITLENIAEYAKTGVDVISVGSLT 158 (169)
T ss_dssp HHHHHHHHTT-SEEEEES-C---HHHHHHHHHHHHHHTTTSEEEEESSSSTTTHHHHHHTT-SEEEECHHH
T ss_pred HHHHHHHHhCCCEEEecCcC---HHHHHHHHHHHhhcCCcEEEEEECCCCHHHHHHHHhcCCCEEEcChhh
Confidence 34566655789988664321 1122 2344444433 58889999999999999997 8999999853
|
4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D .... |
| >KOG3055|consensus | Back alignment and domain information |
|---|
Probab=89.00 E-value=0.34 Score=41.56 Aligned_cols=38 Identities=24% Similarity=0.406 Sum_probs=33.7
Q ss_pred CCCEEEecCCChHhHHHhhc--CCEEEEeceEeecCeecC
Q psy9039 214 DLPILIGSGVTSDNVEHYMT--ADALIIGSHFKQGGRTFL 251 (251)
Q Consensus 214 ~~PV~vG~GI~~~~v~~~~~--ADGvIVGS~~~~~g~~~~ 251 (251)
+--+-+||||+.+|..+.++ |.-|||-|++-.+|.|.|
T Consensus 82 Pg~LQvGGGIN~~Nc~~wl~egASkVIVTSwlF~~g~fdL 121 (263)
T KOG3055|consen 82 PGGLQVGGGINSENCMSWLEEGASKVIVTSWLFNNGKFDL 121 (263)
T ss_pred CCceeecCccChHHHHHHHHhcCceEEEEEEeccCCcccH
Confidence 45578899999999999996 999999999999998864
|
|
| >PLN02274 inosine-5'-monophosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=89.00 E-value=1.1 Score=44.01 Aligned_cols=60 Identities=18% Similarity=0.329 Sum_probs=43.2
Q ss_pred HHHhhhccccEEEecCCCCCCCC-CHHHHHHHHhcC-CCCEEEecCC-ChHhHHHhhc--CCEEEEe
Q psy9039 179 AKAASFFLSDGLIITGNATGDPA-DVSQLMSVKNAV-DLPILIGSGV-TSDNVEHYMT--ADALIIG 240 (251)
Q Consensus 179 a~~a~~~~~D~v~VTG~~~g~~~-~~~~l~~vr~~~-~~PV~vG~GI-~~~~v~~~~~--ADGvIVG 240 (251)
++.....|+|.+.+--++ |... .++.++++|+.. +.+|+ .++| |.+++..+.+ ||++.||
T Consensus 253 ~~~l~~ag~d~i~iD~~~-g~~~~~~~~i~~ik~~~p~~~vi-~g~v~t~e~a~~a~~aGaD~i~vg 317 (505)
T PLN02274 253 LEHLVKAGVDVVVLDSSQ-GDSIYQLEMIKYIKKTYPELDVI-GGNVVTMYQAQNLIQAGVDGLRVG 317 (505)
T ss_pred HHHHHHcCCCEEEEeCCC-CCcHHHHHHHHHHHHhCCCCcEE-EecCCCHHHHHHHHHcCcCEEEEC
Confidence 344445699999886553 3333 247899999977 45554 6677 8999988886 9999997
|
|
| >COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=88.95 E-value=5.6 Score=36.22 Aligned_cols=169 Identities=18% Similarity=0.224 Sum_probs=87.4
Q ss_pred CCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHHHHHHHHcCccceecc
Q psy9039 43 PPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQAAGLDFIRAE 122 (251)
Q Consensus 43 ~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g~~Fir~~ 122 (251)
+-|++.|+ |+|.+ .|. .. ..--.+.+--.++++.+++.....+|+.+-+-.|...++...+..+ +
T Consensus 32 ~~li~~Gv-~gi~~---~Gt---tG-E~~~Ls~eEr~~v~~~~v~~~~grvpviaG~g~~~t~eai~lak~a-----~-- 96 (299)
T COG0329 32 EFLIAAGV-DGLVV---LGT---TG-ESPTLTLEERKEVLEAVVEAVGGRVPVIAGVGSNSTAEAIELAKHA-----E-- 96 (299)
T ss_pred HHHHHcCC-CEEEE---CCC---Cc-cchhcCHHHHHHHHHHHHHHHCCCCcEEEecCCCcHHHHHHHHHHH-----H--
Confidence 66889999 99986 222 10 0011223333345556665554446777777667545566654222 2
Q ss_pred cccccccCCCceee-------cCcchhHHHHHhcCC-Ccc-hhhhhhHhhccCCCCCCcccHHHHHHHhhhccccEEEec
Q psy9039 123 SFVFGHMADEGLMN-------AQAGPLLRYRKQIGA-DNV-LVFTDIKKKHSSHAITADVDITETAKAASFFLSDGLIIT 193 (251)
Q Consensus 123 ~~~~~~~~~~Gli~-------~da~e~~~~r~~l~~-~~i-~i~a~v~~k~~~~~~~~~~~i~~~a~~a~~~~~D~v~VT 193 (251)
.+|.+|++. +..+++..+.+.+-. -+. -+++++-...+ .+.+.+.+.+.++... +.
T Consensus 97 -----~~Gad~il~v~PyY~k~~~~gl~~hf~~ia~a~~lPvilYN~P~~tg-----~~l~~e~i~~la~~~n-----iv 161 (299)
T COG0329 97 -----KLGADGILVVPPYYNKPSQEGLYAHFKAIAEAVDLPVILYNIPSRTG-----VDLSPETIARLAEHPN-----IV 161 (299)
T ss_pred -----hcCCCEEEEeCCCCcCCChHHHHHHHHHHHHhcCCCEEEEeCccccC-----CCCCHHHHHHHhcCCC-----EE
Confidence 233444332 223444443333321 112 12232222222 2344455544444211 22
Q ss_pred CCCCCCCCCHHHHHHHHhcCCC-CEEEecCCChHhHHHhhc-CCEEEEece
Q psy9039 194 GNATGDPADVSQLMSVKNAVDL-PILIGSGVTSDNVEHYMT-ADALIIGSH 242 (251)
Q Consensus 194 G~~~g~~~~~~~l~~vr~~~~~-PV~vG~GI~~~~v~~~~~-ADGvIVGS~ 242 (251)
|.+. ...++..+.++++.... ...+.+|-..-.+..+.. ++|+|-+++
T Consensus 162 giKd-~~gd~~~~~~~~~~~~~~~f~v~~G~d~~~~~~~~~G~~G~is~~~ 211 (299)
T COG0329 162 GVKD-SSGDLDRLEEIIAALGDRDFIVLSGDDELALPALLLGADGVISVTA 211 (299)
T ss_pred EEEe-CCcCHHHHHHHHHhcCccCeeEEeCchHHHHHHHhCCCCeEEeccc
Confidence 3221 22367778877776644 678888887777777766 999998875
|
|
| >TIGR01334 modD putative molybdenum utilization protein ModD | Back alignment and domain information |
|---|
Probab=88.87 E-value=0.82 Score=41.36 Aligned_cols=64 Identities=17% Similarity=0.177 Sum_probs=44.8
Q ss_pred HHHHHHhhhccccEEEecCCCCCCCCCH-HHHHHHHhc-CCCCEEEecCCChHhHHHhhc--CCEEEEece
Q psy9039 176 TETAKAASFFLSDGLIITGNATGDPADV-SQLMSVKNA-VDLPILIGSGVTSDNVEHYMT--ADALIIGSH 242 (251)
Q Consensus 176 ~~~a~~a~~~~~D~v~VTG~~~g~~~~~-~~l~~vr~~-~~~PV~vG~GI~~~~v~~~~~--ADGvIVGS~ 242 (251)
.+.++.+...|+|.+..-+.. +.++ +.++.+++. .++.+.+.||||++|+.++.. +|.+++|+-
T Consensus 198 leea~ea~~~GaDiI~lDn~~---~e~l~~~v~~l~~~~~~~~leasGGI~~~ni~~ya~~GvD~is~gal 265 (277)
T TIGR01334 198 IEQALTVLQASPDILQLDKFT---PQQLHHLHERLKFFDHIPTLAAAGGINPENIADYIEAGIDLFITSAP 265 (277)
T ss_pred HHHHHHHHHcCcCEEEECCCC---HHHHHHHHHHHhccCCCEEEEEECCCCHHHHHHHHhcCCCEEEeCcc
Confidence 344566656799998886322 1122 334445432 367899999999999999997 999999974
|
The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown. |
| >TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase | Back alignment and domain information |
|---|
Probab=88.63 E-value=3.4 Score=37.41 Aligned_cols=188 Identities=11% Similarity=0.062 Sum_probs=84.5
Q ss_pred ccccccCCCCCCCcchHHHHHHHHHhhCCCCcCCCCccEEEEe-ecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCc
Q psy9039 15 VPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQHGVIVE-NMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSV 93 (251)
Q Consensus 15 ~p~~~~~pG~P~~~~~~~~i~~~a~~~a~~l~~~Gv~D~i~ie-N~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~ 93 (251)
-||-.. |+.+++...+.+ +.+.+.|+ |||.+- +.+..+. .+.+-=.++++.+++.....+
T Consensus 10 TPf~~d--g~iD~~~l~~lv--------~~~~~~Gv-~gi~v~GstGE~~~--------Ls~~Er~~l~~~~~~~~~g~~ 70 (294)
T TIGR02313 10 TPFKRN--GDIDEEALRELI--------EFQIEGGS-HAISVGGTSGEPGS--------LTLEERKQAIENAIDQIAGRI 70 (294)
T ss_pred CCcCCC--CCcCHHHHHHHH--------HHHHHcCC-CEEEECccCccccc--------CCHHHHHHHHHHHHHHhCCCC
Confidence 355444 555555444444 66778999 999862 1111211 111112234444444433336
Q ss_pred cEEEEEeeCChHHHHHHH---HHcCccceecccccccccCCCceeecCcchhHHHHHhcC-CC-cchhh-hhhHhhccCC
Q psy9039 94 PVGVQILSGCNKAALATA---QAAGLDFIRAESFVFGHMADEGLMNAQAGPLLRYRKQIG-AD-NVLVF-TDIKKKHSSH 167 (251)
Q Consensus 94 P~Gvn~~~N~~~~~~~ia---~a~g~~Fir~~~~~~~~~~~~Gli~~da~e~~~~r~~l~-~~-~i~i~-a~v~~k~~~~ 167 (251)
|+.+.+-.|....++..+ ...|++.+-. ...-...+..+++.+|-+.+- .. ++.++ +++-...+..
T Consensus 71 pvi~gv~~~~t~~ai~~a~~A~~~Gad~v~v--------~pP~y~~~~~~~l~~~f~~ia~a~~~lpv~iYn~P~~tg~~ 142 (294)
T TIGR02313 71 PFAPGTGALNHDETLELTKFAEEAGADAAMV--------IVPYYNKPNQEALYDHFAEVADAVPDFPIIIYNIPGRAAQE 142 (294)
T ss_pred cEEEECCcchHHHHHHHHHHHHHcCCCEEEE--------cCccCCCCCHHHHHHHHHHHHHhccCCCEEEEeCchhcCcC
Confidence 887777766533444433 2234333322 111122233456666555442 11 23333 2221122222
Q ss_pred CCCCcccHHHHHHHhh-hccccEEEecCCCCCCCCCHHHHHHHHhcC--CCCEEEecCCChHhHHHhhc-CCEEEEece
Q psy9039 168 AITADVDITETAKAAS-FFLSDGLIITGNATGDPADVSQLMSVKNAV--DLPILIGSGVTSDNVEHYMT-ADALIIGSH 242 (251)
Q Consensus 168 ~~~~~~~i~~~a~~a~-~~~~D~v~VTG~~~g~~~~~~~l~~vr~~~--~~PV~vG~GI~~~~v~~~~~-ADGvIVGS~ 242 (251)
.+.+.+.+.++ .-.+- |-+.. ..++..+.++.+.. ++.|+.| -...-+..+.. |||.|.|.+
T Consensus 143 -----l~~~~l~~L~~~~pnv~-----giK~s-s~d~~~~~~~~~~~~~~~~v~~G--~d~~~~~~l~~Ga~G~is~~~ 208 (294)
T TIGR02313 143 -----IAPKTMARLRKDCPNIV-----GAKES-NKDFEHLNHLFLEAGRDFLLFCG--IELLCLPMLAIGAAGSIAATA 208 (294)
T ss_pred -----CCHHHHHHHHhhCCCEE-----EEEeC-CCCHHHHHHHHHhcCCCeEEEEc--chHHHHHHHHCCCCEEEecHH
Confidence 33444444442 22222 22211 22456666655444 3444444 33333444445 999998864
|
This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism. |
| >cd04823 ALAD_PBGS_aspartate_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll | Back alignment and domain information |
|---|
Probab=88.08 E-value=9.4 Score=35.16 Aligned_cols=40 Identities=15% Similarity=0.271 Sum_probs=27.3
Q ss_pred HHHHHHhhh---ccccEEEecCCCCCCCCCHHHHHHHHhcCCCCEEE
Q psy9039 176 TETAKAASF---FLSDGLIITGNATGDPADVSQLMSVKNAVDLPILI 219 (251)
Q Consensus 176 ~~~a~~a~~---~~~D~v~VTG~~~g~~~~~~~l~~vr~~~~~PV~v 219 (251)
.+..+++.. -|+|.+.|- .+ -+-++.|+++|+.+++||.+
T Consensus 225 ~eAlre~~~Di~EGAD~lMVK---Pa-l~YLDIi~~~k~~~~lPvaa 267 (320)
T cd04823 225 REALREVALDIAEGADMVMVK---PG-MPYLDIIRRVKDEFGVPTFA 267 (320)
T ss_pred HHHHHHHHhhHHhCCCEEEEc---CC-chHHHHHHHHHHhcCCCEEE
Confidence 333455542 599999883 21 12368899999999999885
|
This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. All of PBGS_aspartate_rich contain an aspartate rich metal binding site with the general sequence DXALDX(Y/F)X3G(H/Q)DG. They also contain an allosteric magnesiu |
| >cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain | Back alignment and domain information |
|---|
Probab=87.74 E-value=2.6 Score=38.84 Aligned_cols=68 Identities=18% Similarity=0.389 Sum_probs=45.1
Q ss_pred cHHHHHHHhhhccccEEEecCC------CCCCCCCH----HHHHHHHhcCCCCEEE---ecCCChHhHHHhhc--CCEEE
Q psy9039 174 DITETAKAASFFLSDGLIITGN------ATGDPADV----SQLMSVKNAVDLPILI---GSGVTSDNVEHYMT--ADALI 238 (251)
Q Consensus 174 ~i~~~a~~a~~~~~D~v~VTG~------~~g~~~~~----~~l~~vr~~~~~PV~v---G~GI~~~~v~~~~~--ADGvI 238 (251)
+.+++.+..+...+|++-+.=. ......+. +.|+.+++.+++||++ |+|.+.+.+..+.+ +|++.
T Consensus 128 ~~~~~~~~i~~~~adalel~l~~~q~~~~~~~~~df~~~~~~i~~l~~~~~vPVivK~~g~g~s~~~a~~l~~~Gvd~I~ 207 (326)
T cd02811 128 GVEEARRAVEMIEADALAIHLNPLQEAVQPEGDRDFRGWLERIEELVKALSVPVIVKEVGFGISRETAKRLADAGVKAID 207 (326)
T ss_pred CHHHHHHHHHhcCCCcEEEeCcchHhhcCCCCCcCHHHHHHHHHHHHHhcCCCEEEEecCCCCCHHHHHHHHHcCCCEEE
Confidence 3344444444456777755211 11112233 5688888888999999 99989888888775 99999
Q ss_pred Eec
Q psy9039 239 IGS 241 (251)
Q Consensus 239 VGS 241 (251)
|+.
T Consensus 208 vsG 210 (326)
T cd02811 208 VAG 210 (326)
T ss_pred ECC
Confidence 965
|
Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway. |
| >cd08210 RLP_RrRLP Ribulose bisphosphate carboxylase like proteins (RLPs) similar to R | Back alignment and domain information |
|---|
Probab=87.60 E-value=15 Score=34.46 Aligned_cols=54 Identities=11% Similarity=-0.007 Sum_probs=39.4
Q ss_pred CCCcCCCCccEE-EEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEee
Q psy9039 43 PPSVPVGVQHGV-IVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILS 101 (251)
Q Consensus 43 ~~l~~~Gv~D~i-~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~ 101 (251)
..+..+|+ |.| --||..+-||..- -+...+..+.+++..+++...+++-+|+-.
T Consensus 148 ~~~~~gGv-D~IKdDe~l~~~~~~p~----~eRv~~v~~av~~a~~eTG~~~~y~~Nita 202 (364)
T cd08210 148 YAFALGGI-DIIKDDHGLADQPFAPF----EERVKACQEAVAEANAETGGRTLYAPNVTG 202 (364)
T ss_pred HHHHhcCC-CeeecCccccCccCCCH----HHHHHHHHHHHHHHHhhcCCcceEEEecCC
Confidence 44567999 999 5567888888753 456667777788888777755688888754
|
rubrum RLP. RLP from Rhodospirillum rubrum plays a role in an uncharacterized sulfur salvage pathway and has been shown to catalyze a novel isomerization reaction that converts 5-methylthio-d-ribulose 1-phosphate to a 3:1 mixture of 1-methylthioxylulose 5-phosphate and 1-methylthioribulose 5-phosphate. |
| >cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily | Back alignment and domain information |
|---|
Probab=87.41 E-value=5.4 Score=34.77 Aligned_cols=160 Identities=20% Similarity=0.193 Sum_probs=79.6
Q ss_pred CCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHHHHHHHHcCccceecc
Q psy9039 43 PPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQAAGLDFIRAE 122 (251)
Q Consensus 43 ~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g~~Fir~~ 122 (251)
+.|.+.|+ |.|++ |.|-+.+.. |.. ....++++++++..+. .++.+++ .|. ...+..+...|.+.++..
T Consensus 26 ~~L~~~GV-~~IEv----g~~~~~~~~--p~~-~~~~~~i~~l~~~~~~-~~~~~l~-~~~-~~~i~~a~~~g~~~i~i~ 94 (265)
T cd03174 26 EALDEAGV-DSIEV----GSGASPKAV--PQM-EDDWEVLRAIRKLVPN-VKLQALV-RNR-EKGIERALEAGVDEVRIF 94 (265)
T ss_pred HHHHHcCC-CEEEe----ccCcCcccc--ccC-CCHHHHHHHHHhccCC-cEEEEEc-cCc-hhhHHHHHhCCcCEEEEE
Confidence 66788999 99975 665554211 222 1234567778776532 3665544 343 455666666777777753
Q ss_pred ccccc-------ccCCCceeecCcchhHHHHHhcCCCcchhhh-hhHhhccCCCCCCcccHHHHHHHhhhccccEEEecC
Q psy9039 123 SFVFG-------HMADEGLMNAQAGPLLRYRKQIGADNVLVFT-DIKKKHSSHAITADVDITETAKAASFFLSDGLIITG 194 (251)
Q Consensus 123 ~~~~~-------~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a-~v~~k~~~~~~~~~~~i~~~a~~a~~~~~D~v~VTG 194 (251)
....- ..+.++ ......+..++.++.|. .+.+.. ++.. + ..+...+.+.++.+...|+|.+.+.-
T Consensus 95 ~~~s~~~~~~~~~~~~~~-~~~~~~~~i~~a~~~G~-~v~~~~~~~~~----~-~~~~~~l~~~~~~~~~~g~~~i~l~D 167 (265)
T cd03174 95 DSASETHSRKNLNKSREE-DLENAEEAIEAAKEAGL-EVEGSLEDAFG----C-KTDPEYVLEVAKALEEAGADEISLKD 167 (265)
T ss_pred EecCHHHHHHHhCCCHHH-HHHHHHHHHHHHHHCCC-eEEEEEEeecC----C-CCCHHHHHHHHHHHHHcCCCEEEech
Confidence 10000 000000 11123444555566554 222211 1110 0 01223455566666667899888744
Q ss_pred CCCCC--CCCH-HHHHHHHhcCC-CCEEEec
Q psy9039 195 NATGD--PADV-SQLMSVKNAVD-LPILIGS 221 (251)
Q Consensus 195 ~~~g~--~~~~-~~l~~vr~~~~-~PV~vG~ 221 (251)
+ .|. +... ++++.+|+..+ +|+-+=+
T Consensus 168 t-~G~~~P~~v~~li~~l~~~~~~~~~~~H~ 197 (265)
T cd03174 168 T-VGLATPEEVAELVKALREALPDVPLGLHT 197 (265)
T ss_pred h-cCCcCHHHHHHHHHHHHHhCCCCeEEEEe
Confidence 3 222 2233 56778888764 4444433
|
The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM". |
| >TIGR02660 nifV_homocitr homocitrate synthase NifV | Back alignment and domain information |
|---|
Probab=87.39 E-value=6.3 Score=36.80 Aligned_cols=146 Identities=18% Similarity=0.208 Sum_probs=75.6
Q ss_pred CCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHHHHHHHHcCccceecc
Q psy9039 43 PPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQAAGLDFIRAE 122 (251)
Q Consensus 43 ~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g~~Fir~~ 122 (251)
+.|.+.|+ |.|++ |+|-..+ . -...++++++..+ +.-+..+.......+..+...|.+.++..
T Consensus 30 ~~L~~~Gv-~~IEv----G~p~~~~---~------~~e~i~~i~~~~~---~~~i~~~~r~~~~di~~a~~~g~~~i~i~ 92 (365)
T TIGR02660 30 RALDEAGV-DELEV----GIPAMGE---E------ERAVIRAIVALGL---PARLMAWCRARDADIEAAARCGVDAVHIS 92 (365)
T ss_pred HHHHHcCC-CEEEE----eCCCCCH---H------HHHHHHHHHHcCC---CcEEEEEcCCCHHHHHHHHcCCcCEEEEE
Confidence 66889999 99975 7876532 1 1234555554423 11233333333455666666777877753
Q ss_pred cccccccCCC------c----eeecCcchhHHHHHhcCCCcchhhhhhHhhccCCCCCCcccHHHHHHHhhhccccEEEe
Q psy9039 123 SFVFGHMADE------G----LMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSSHAITADVDITETAKAASFFLSDGLII 192 (251)
Q Consensus 123 ~~~~~~~~~~------G----li~~da~e~~~~r~~l~~~~i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~~~~~D~v~V 192 (251)
. ..++. + -......+..++.++.|. .+.+ ....+.. ++...+.++++.+..+|+|.+.+
T Consensus 93 ~----~~Sd~~~~~~~~~s~~e~l~~~~~~i~~ak~~g~-~v~~----~~ed~~r--~~~~~l~~~~~~~~~~Ga~~i~l 161 (365)
T TIGR02660 93 I----PVSDLQIEAKLRKDRAWVLERLARLVSFARDRGL-FVSV----GGEDASR--ADPDFLVELAEVAAEAGADRFRF 161 (365)
T ss_pred E----ccCHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCC-EEEE----eecCCCC--CCHHHHHHHHHHHHHcCcCEEEE
Confidence 1 11100 0 001113456667777664 2322 1111111 23345556666665578998877
Q ss_pred cCCCCCC-CC-CH-HHHHHHHhcCCCCE
Q psy9039 193 TGNATGD-PA-DV-SQLMSVKNAVDLPI 217 (251)
Q Consensus 193 TG~~~g~-~~-~~-~~l~~vr~~~~~PV 217 (251)
.=+- |. .| .. ++++.+++..++|+
T Consensus 162 ~DT~-G~~~P~~v~~lv~~l~~~~~v~l 188 (365)
T TIGR02660 162 ADTV-GILDPFSTYELVRALRQAVDLPL 188 (365)
T ss_pred cccC-CCCCHHHHHHHHHHHHHhcCCeE
Confidence 4332 22 22 23 66778888776664
|
This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase. |
| >cd00408 DHDPS-like Dihydrodipicolinate synthase family | Back alignment and domain information |
|---|
Probab=87.23 E-value=11 Score=33.32 Aligned_cols=172 Identities=17% Similarity=0.187 Sum_probs=77.0
Q ss_pred CCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHHHHHH---HHcCccce
Q psy9039 43 PPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATA---QAAGLDFI 119 (251)
Q Consensus 43 ~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia---~a~g~~Fi 119 (251)
+.|.+.|+ |+|.+ +|. .. .---.+.+--.++++.+++.....+|+.+.+-.+....+...+ ...|++.+
T Consensus 25 ~~l~~~Gv-~gi~~---~Gs---tG-E~~~ls~~Er~~l~~~~~~~~~~~~~vi~gv~~~~~~~~i~~a~~a~~~Gad~v 96 (281)
T cd00408 25 EFLIEAGV-DGLVV---LGT---TG-EAPTLTDEERKEVIEAVVEAVAGRVPVIAGVGANSTREAIELARHAEEAGADGV 96 (281)
T ss_pred HHHHHcCC-CEEEE---CCC---Cc-ccccCCHHHHHHHHHHHHHHhCCCCeEEEecCCccHHHHHHHHHHHHHcCCCEE
Confidence 66777899 99976 332 00 0001222333445555655543336877777665533333332 22344333
Q ss_pred ecccccccccCCCceeecCcchhHHHHHhcCC-Ccchhh-hhhHhhccCCCCCCcccHHHHHHHhhhccccEEEecCCCC
Q psy9039 120 RAESFVFGHMADEGLMNAQAGPLLRYRKQIGA-DNVLVF-TDIKKKHSSHAITADVDITETAKAASFFLSDGLIITGNAT 197 (251)
Q Consensus 120 r~~~~~~~~~~~~Gli~~da~e~~~~r~~l~~-~~i~i~-a~v~~k~~~~~~~~~~~i~~~a~~a~~~~~D~v~VTG~~~ 197 (251)
-. ...-...+..+++.+|-+.+-. .++.++ .+.-...|. +.+.+.+.+-+.... |.|-+.
T Consensus 97 ~v--------~pP~y~~~~~~~~~~~~~~ia~~~~~pi~iYn~P~~tg~-----~l~~~~~~~L~~~~~-----v~giK~ 158 (281)
T cd00408 97 LV--------VPPYYNKPSQEGIVAHFKAVADASDLPVILYNIPGRTGV-----DLSPETIARLAEHPN-----IVGIKD 158 (281)
T ss_pred EE--------CCCcCCCCCHHHHHHHHHHHHhcCCCCEEEEECccccCC-----CCCHHHHHHHhcCCC-----EEEEEe
Confidence 32 1111222234556665555422 233332 221111122 234444444433212 223232
Q ss_pred CCCCCHHHHHHHHhcCCCCEEEecCCChHhHHH-hhc-CCEEEEece
Q psy9039 198 GDPADVSQLMSVKNAVDLPILIGSGVTSDNVEH-YMT-ADALIIGSH 242 (251)
Q Consensus 198 g~~~~~~~l~~vr~~~~~PV~vG~GI~~~~v~~-~~~-ADGvIVGS~ 242 (251)
. ..+...+.++++...-.+.+-.|- .+.+.. +.. ++|++.|++
T Consensus 159 s-~~d~~~~~~~~~~~~~~~~v~~G~-d~~~~~~l~~G~~G~i~~~~ 203 (281)
T cd00408 159 S-SGDLDRLTRLIALLGPDFAVLSGD-DDLLLPALALGADGAISGAA 203 (281)
T ss_pred C-CCCHHHHHHHHHhcCCCeEEEEcc-hHHHHHHHHcCCCEEEehHH
Confidence 2 245666666666542233333444 334444 445 999998863
|
A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family. |
| >PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=87.13 E-value=15 Score=33.37 Aligned_cols=61 Identities=21% Similarity=0.410 Sum_probs=41.7
Q ss_pred hhccccEEEec-CCCCCCC---C--CHHHHHHHHhcCCCCEEE--ecCCChHhHHHhhc--CCEEEEeceE
Q psy9039 183 SFFLSDGLIIT-GNATGDP---A--DVSQLMSVKNAVDLPILI--GSGVTSDNVEHYMT--ADALIIGSHF 243 (251)
Q Consensus 183 ~~~~~D~v~VT-G~~~g~~---~--~~~~l~~vr~~~~~PV~v--G~GI~~~~v~~~~~--ADGvIVGS~~ 243 (251)
+.-|+|++-|+ |...|.. + +.++|+++++.+++|+++ |+|+..+++++..+ .-=+=|+|.|
T Consensus 165 ~~TgvD~LAvaiGt~HG~Y~~~p~Ldfd~l~~I~~~~~vPLVLHGgSG~~~e~~~kai~~GI~KiNi~T~l 235 (286)
T PRK12738 165 ELTGVDSLAVAIGTAHGLYSKTPKIDFQRLAEIREVVDVPLVLHGASDVPDEFVRRTIELGVTKVNVATEL 235 (286)
T ss_pred HHhCCCEEEeccCcccCCCCCCCcCCHHHHHHHHHHhCCCEEEeCCCCCCHHHHHHHHHcCCeEEEeCcHH
Confidence 33589999774 5444432 2 468899999999999988 55666788988774 4444455544
|
|
| >PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=86.58 E-value=14 Score=33.45 Aligned_cols=60 Identities=18% Similarity=0.413 Sum_probs=41.6
Q ss_pred hccccEEEec-CCCCCC---CC--CHHHHHHHHhcCCCCEEE--ecCCChHhHHHhhc--CCEEEEeceE
Q psy9039 184 FFLSDGLIIT-GNATGD---PA--DVSQLMSVKNAVDLPILI--GSGVTSDNVEHYMT--ADALIIGSHF 243 (251)
Q Consensus 184 ~~~~D~v~VT-G~~~g~---~~--~~~~l~~vr~~~~~PV~v--G~GI~~~~v~~~~~--ADGvIVGS~~ 243 (251)
.-|+|++-|+ |+..|. .+ +.++|+++++.+++|+++ |+|+..+++++..+ .-=+=|+|.+
T Consensus 166 ~TgvD~LAvaiGt~HG~y~~~p~Ld~~~L~~I~~~~~vPLVLHGgSG~~~e~~~~ai~~Gi~KiNi~T~l 235 (284)
T PRK09195 166 ATGIDSLAVAIGTAHGMYKGEPKLDFDRLENIRQWVNIPLVLHGASGLPTKDIQQTIKLGICKVNVATEL 235 (284)
T ss_pred HHCcCEEeeccCccccccCCCCcCCHHHHHHHHHHhCCCeEEecCCCCCHHHHHHHHHcCCeEEEeCcHH
Confidence 3589999764 544443 22 468899999999999988 56667788888774 4444455544
|
|
| >PRK14566 triosephosphate isomerase; Provisional | Back alignment and domain information |
|---|
Probab=86.33 E-value=0.77 Score=41.14 Aligned_cols=29 Identities=31% Similarity=0.530 Sum_probs=26.6
Q ss_pred CCCEEEecCCChHhHHHhhc---CCEEEEece
Q psy9039 214 DLPILIGSGVTSDNVEHYMT---ADALIIGSH 242 (251)
Q Consensus 214 ~~PV~vG~GI~~~~v~~~~~---ADGvIVGS~ 242 (251)
++||+-||-++++|+++++. -||+.||.+
T Consensus 212 ~~rIlYGGSV~~~N~~~l~~~~dIDG~LVGgA 243 (260)
T PRK14566 212 NIRILYGGSVTPSNAADLFAQPDVDGGLIGGA 243 (260)
T ss_pred cceEEecCCCCHhHHHHHhcCCCCCeEEechH
Confidence 58999999999999999985 999999965
|
|
| >PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=86.21 E-value=1.6 Score=39.73 Aligned_cols=67 Identities=10% Similarity=0.092 Sum_probs=44.4
Q ss_pred cHHHHHHHhhhccccEEEecCCCCCCCCCH-HHHHHHHhc-CCCCEEEecCCChHhHHHhhc--CCEEEEeceEe
Q psy9039 174 DITETAKAASFFLSDGLIITGNATGDPADV-SQLMSVKNA-VDLPILIGSGVTSDNVEHYMT--ADALIIGSHFK 244 (251)
Q Consensus 174 ~i~~~a~~a~~~~~D~v~VTG~~~g~~~~~-~~l~~vr~~-~~~PV~vG~GI~~~~v~~~~~--ADGvIVGS~~~ 244 (251)
+++ .+..|...|+|.+-.-... +.++ +.+..+|+. .++.+.+.||||++|++++.. +|.+.+|+-..
T Consensus 208 tl~-ea~eal~~gaDiI~LDnm~---~e~vk~av~~~~~~~~~v~ieaSGGI~~~ni~~yA~tGvD~Is~galt~ 278 (289)
T PRK07896 208 SLE-QLDEVLAEGAELVLLDNFP---VWQTQEAVQRRDARAPTVLLESSGGLTLDTAAAYAETGVDYLAVGALTH 278 (289)
T ss_pred CHH-HHHHHHHcCCCEEEeCCCC---HHHHHHHHHHHhccCCCEEEEEECCCCHHHHHHHHhcCCCEEEeChhhc
Confidence 444 4455555789998765221 1122 223333333 257899999999999999997 99999998553
|
|
| >PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=86.02 E-value=5.2 Score=37.41 Aligned_cols=156 Identities=22% Similarity=0.238 Sum_probs=92.2
Q ss_pred HHHHHhhCCCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHHHHHHHHc
Q psy9039 35 CAEIRKVLPPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQAA 114 (251)
Q Consensus 35 ~~~a~~~a~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~ 114 (251)
++..+++++.|+++|+ |.|-+ -+ .+. . .+..++++++.++ +|+...+.+|. ..++.. ...
T Consensus 41 v~atv~Qi~~L~~aGc-eiVRv----av--~~~-----~----~a~al~~I~~~~~--iPlvADIHFd~-~lAl~a-~~~ 100 (360)
T PRK00366 41 VEATVAQIKRLARAGC-EIVRV----AV--PDM-----E----AAAALPEIKKQLP--VPLVADIHFDY-RLALAA-AEA 100 (360)
T ss_pred HHHHHHHHHHHHHcCC-CEEEE----cc--CCH-----H----HHHhHHHHHHcCC--CCEEEecCCCH-HHHHHH-HHh
Confidence 3455555599999999 99964 22 221 1 3456778888888 89999999975 333332 346
Q ss_pred CccceecccccccccCCCceeecCcchhHHHHHhcCCCcchh-------hhhhHhhccCCCCCCcccHHHHH-HHhh---
Q psy9039 115 GLDFIRAESFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLV-------FTDIKKKHSSHAITADVDITETA-KAAS--- 183 (251)
Q Consensus 115 g~~Fir~~~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i-------~a~v~~k~~~~~~~~~~~i~~~a-~~a~--- 183 (251)
|++-+|.|. | .-|-+.....++.+.+++.+. .|.+ =.++..++|-| ++ +.+.+.| +.++
T Consensus 101 G~~~iRINP--G----Nig~~~~~v~~vv~~ak~~~i-pIRIGvN~GSL~~~~~~~yg~~--t~-eamveSAl~~~~~le 170 (360)
T PRK00366 101 GADALRINP--G----NIGKRDERVREVVEAAKDYGI-PIRIGVNAGSLEKDLLEKYGEP--TP-EALVESALRHAKILE 170 (360)
T ss_pred CCCEEEECC--C----CCCchHHHHHHHHHHHHHCCC-CEEEecCCccChHHHHHHcCCC--CH-HHHHHHHHHHHHHHH
Confidence 688899861 1 112222235666777777665 3333 13556666543 22 2233333 2222
Q ss_pred hccccEEEecCCCCCCCCCHHHHHHHHhcCCCCEEEe
Q psy9039 184 FFLSDGLIITGNATGDPADVSQLMSVKNAVDLPILIG 220 (251)
Q Consensus 184 ~~~~D~v~VTG~~~g~~~~~~~l~~vr~~~~~PV~vG 220 (251)
..+=+=+++|=..+......+..+.+.+.++.|+=+|
T Consensus 171 ~~~f~~iviS~KsS~v~~~i~ayrlla~~~dyPLHlG 207 (360)
T PRK00366 171 ELGFDDIKISVKASDVQDLIAAYRLLAKRCDYPLHLG 207 (360)
T ss_pred HCCCCcEEEEEEcCCHHHHHHHHHHHHhcCCCCceec
Confidence 2344666777665554445566667777889998775
|
|
| >TIGR00284 dihydropteroate synthase-related protein | Back alignment and domain information |
|---|
Probab=85.91 E-value=3.1 Score=40.76 Aligned_cols=151 Identities=14% Similarity=0.080 Sum_probs=79.6
Q ss_pred HHHHhhCCCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHHHHHHHHcC
Q psy9039 36 AEIRKVLPPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQAAG 115 (251)
Q Consensus 36 ~~a~~~a~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g 115 (251)
+..++.+..+.+.|+ |.|-| |..-..| ++. -+..+++.+++.++ +|+.+..+.. ..+..|...|
T Consensus 165 ~~i~~~A~~~~~~GA-DIIDI----G~~st~p---~~~---~v~~~V~~l~~~~~--~pISIDT~~~---~v~eaAL~aG 228 (499)
T TIGR00284 165 DGIEGLAARMERDGA-DMVAL----GTGSFDD---DPD---VVKEKVKTALDALD--SPVIADTPTL---DELYEALKAG 228 (499)
T ss_pred HHHHHHHHHHHHCCC-CEEEE----CCCcCCC---cHH---HHHHHHHHHHhhCC--CcEEEeCCCH---HHHHHHHHcC
Confidence 344555566778999 99976 4433333 333 37778888887777 7999998753 3344455568
Q ss_pred ccceecccccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHhhccCCCCCCcccHHHHHHHhhhccccEEEe-cC
Q psy9039 116 LDFIRAESFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSSHAITADVDITETAKAASFFLSDGLII-TG 194 (251)
Q Consensus 116 ~~Fir~~~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~~~~~D~v~V-TG 194 (251)
++++-. ..|. ...++.+..++.++.-| ++. .. .. ..-..+.+..+.+...|.+-+++ -|
T Consensus 229 AdiINs---------Vs~~---~~d~~~~l~a~~g~~vV-lm~----~~-~~--~~~~~l~~~ie~a~~~Gi~~IIlDPg 288 (499)
T TIGR00284 229 ASGVIM---------PDVE---NAVELASEKKLPEDAFV-VVP----GN-QP--TNYEELAKAVKKLRTSGYSKVAADPS 288 (499)
T ss_pred CCEEEE---------CCcc---chhHHHHHHHHcCCeEE-EEc----CC-CC--chHHHHHHHHHHHHHCCCCcEEEeCC
Confidence 887663 1121 12345566666665222 221 00 00 00022334444444456644433 11
Q ss_pred CCC---CCCCCHHHHHHHHhcCCCCEEEecC
Q psy9039 195 NAT---GDPADVSQLMSVKNAVDLPILIGSG 222 (251)
Q Consensus 195 ~~~---g~~~~~~~l~~vr~~~~~PV~vG~G 222 (251)
-.. +....++.++++|+..+.|+++|-|
T Consensus 289 lg~~~~~l~~sL~~l~~~r~~~~~Pil~GvS 319 (499)
T TIGR00284 289 LSPPLLGLLESIIRFRRASRLLNVPLVFGAA 319 (499)
T ss_pred CCcchHHHHHHHHHHHHHHHhcCCcEEEeec
Confidence 111 0011123444555566899999965
|
This protein has been found so far only in the Archaea, and in particular in those archaea that lack a bacterial-type dihydropteroate synthase. The central region of this protein shows considerable homology to the amino-terminal half of dihydropteroate synthases, while the carboxyl-terminal region shows homology to the small, uncharacterized protein slr0651 of Synechocystis PCC6803. |
| >PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=85.89 E-value=2.8 Score=38.01 Aligned_cols=61 Identities=10% Similarity=0.042 Sum_probs=42.7
Q ss_pred HHHHHhhhccccEEEecCCCCCCCCCHHHHHHHHhc--CCCCEEEecCCChHhHHHhhc--CCEEEEeceE
Q psy9039 177 ETAKAASFFLSDGLIITGNATGDPADVSQLMSVKNA--VDLPILIGSGVTSDNVEHYMT--ADALIIGSHF 243 (251)
Q Consensus 177 ~~a~~a~~~~~D~v~VTG~~~g~~~~~~~l~~vr~~--~~~PV~vG~GI~~~~v~~~~~--ADGvIVGS~~ 243 (251)
+.+..+...|+|.+-.-.. +.+.+++..+. ...|+-+.||||.+|++++.. .|.+.+|+-.
T Consensus 205 eea~ea~~~gaDiI~LDn~------s~e~l~~av~~~~~~~~leaSGGI~~~ni~~yA~tGVD~Is~Galt 269 (281)
T PRK06106 205 DQLEEALELGVDAVLLDNM------TPDTLREAVAIVAGRAITEASGRITPETAPAIAASGVDLISVGWLT 269 (281)
T ss_pred HHHHHHHHcCCCEEEeCCC------CHHHHHHHHHHhCCCceEEEECCCCHHHHHHHHhcCCCEEEeChhh
Confidence 3455555668998765322 33444443332 257899999999999999997 9999999854
|
|
| >TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase | Back alignment and domain information |
|---|
Probab=85.62 E-value=8.5 Score=34.73 Aligned_cols=168 Identities=13% Similarity=0.103 Sum_probs=77.7
Q ss_pred CCCcCCCCccEEEEe-ecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHHHHHH---HHcCccc
Q psy9039 43 PPSVPVGVQHGVIVE-NMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATA---QAAGLDF 118 (251)
Q Consensus 43 ~~l~~~Gv~D~i~ie-N~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia---~a~g~~F 118 (251)
+.|.+.|+ |||.+- +-+-++.- +.+--.++++.+.+.....+|+.+.+-.|. ..++..+ ...|++.
T Consensus 33 ~~l~~~Gv-~gi~v~GstGE~~~L--------t~eEr~~v~~~~~~~~~g~~pvi~gv~~~t-~~ai~~a~~a~~~Gada 102 (296)
T TIGR03249 33 EWLLGYGL-EALFAAGGTGEFFSL--------TPAEYEQVVEIAVSTAKGKVPVYTGVGGNT-SDAIEIARLAEKAGADG 102 (296)
T ss_pred HHHHhcCC-CEEEECCCCcCcccC--------CHHHHHHHHHHHHHHhCCCCcEEEecCccH-HHHHHHHHHHHHhCCCE
Confidence 66778999 999862 22222222 222223344444444333357777765442 3444433 2233333
Q ss_pred eecccccccccCCCceeecCcchhHHHHHhcCC-Ccchhh-hhhHhhccCCCCCCcccHHHHHHHhh-hccccEEEecCC
Q psy9039 119 IRAESFVFGHMADEGLMNAQAGPLLRYRKQIGA-DNVLVF-TDIKKKHSSHAITADVDITETAKAAS-FFLSDGLIITGN 195 (251)
Q Consensus 119 ir~~~~~~~~~~~~Gli~~da~e~~~~r~~l~~-~~i~i~-a~v~~k~~~~~~~~~~~i~~~a~~a~-~~~~D~v~VTG~ 195 (251)
+-. ...-...+..+++.+|.+.+-. .++.++ ++ ..+. +.+.+.+.+-+. .-. |.|-
T Consensus 103 v~~--------~pP~y~~~s~~~i~~~f~~v~~a~~~pvilYn---~~g~-----~l~~~~~~~La~~~~n-----vvgi 161 (296)
T TIGR03249 103 YLL--------LPPYLINGEQEGLYAHVEAVCESTDLGVIVYQ---RDNA-----VLNADTLERLADRCPN-----LVGF 161 (296)
T ss_pred EEE--------CCCCCCCCCHHHHHHHHHHHHhccCCCEEEEe---CCCC-----CCCHHHHHHHHhhCCC-----EEEE
Confidence 221 1111222334566666555421 122222 21 2222 234444444443 222 2232
Q ss_pred CCCCCCCHHHHHHHHhcC--CCCEEEecCCChHhHHH-hhc-CCEEEEece
Q psy9039 196 ATGDPADVSQLMSVKNAV--DLPILIGSGVTSDNVEH-YMT-ADALIIGSH 242 (251)
Q Consensus 196 ~~g~~~~~~~l~~vr~~~--~~PV~vG~GI~~~~v~~-~~~-ADGvIVGS~ 242 (251)
+.. ..+++.+.++++.. +..|+.|++.....+-. +.. |+|+|.|.+
T Consensus 162 Kds-~~d~~~~~~~~~~~~~~~~v~~G~~~~d~~~~~~~~~Ga~G~is~~~ 211 (296)
T TIGR03249 162 KDG-IGDMEQMIEITQRLGDRLGYLGGMPTAEVTAPAYLPLGVTSYSSAIF 211 (296)
T ss_pred EeC-CCCHHHHHHHHHHcCCCeEEEeCCCcchhhHHHHHhCCCCEEEecHH
Confidence 221 23566666665543 56777777664444444 334 999997754
|
5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate. |
| >PRK07188 nicotinate phosphoribosyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=85.50 E-value=3.6 Score=38.48 Aligned_cols=44 Identities=16% Similarity=0.413 Sum_probs=35.5
Q ss_pred CHHHHHHHHhcC------CCCEEEecCCChHhHHHhhc----CCEEEEeceEee
Q psy9039 202 DVSQLMSVKNAV------DLPILIGSGVTSDNVEHYMT----ADALIIGSHFKQ 245 (251)
Q Consensus 202 ~~~~l~~vr~~~------~~PV~vG~GI~~~~v~~~~~----ADGvIVGS~~~~ 245 (251)
..++++++|+.. ++-|++.|||++++++++.. .|+.=|||++..
T Consensus 262 ~~~l~~~vr~~Ld~~g~~~vkI~aSgGine~~I~~~~~~g~piD~~GVGt~l~~ 315 (352)
T PRK07188 262 NPELIKALRKALDENGGKHVKIIVSSGFDAKKIREFEAQNVPVDIYGVGSSLLK 315 (352)
T ss_pred cHHHHHHHHHHHhhCCCCCcEEEEeCCCCHHHHHHHHHcCCCccEEecCccccc
Confidence 356677777643 45699999999999999984 799999999976
|
|
| >cd00423 Pterin_binding Pterin binding enzymes | Back alignment and domain information |
|---|
Probab=85.47 E-value=1.9 Score=38.27 Aligned_cols=97 Identities=16% Similarity=0.129 Sum_probs=57.6
Q ss_pred HHHhhCCCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHHHHHHHHcCc
Q psy9039 37 EIRKVLPPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQAAGL 116 (251)
Q Consensus 37 ~a~~~a~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g~ 116 (251)
.+++.++.+.+.|+ |.|-|-=+-..|.+.++ +..+=.+-+..+++.+++.++ +|+.+..+.. ..+..|...|+
T Consensus 25 ~~~~~a~~~~~~GA-diIDvG~~st~p~~~~~-~~~~E~~rl~~~v~~l~~~~~--~piSIDT~~~---~v~~aaL~~g~ 97 (258)
T cd00423 25 KALEHARRMVEEGA-DIIDIGGESTRPGAEPV-SVEEELERVIPVLRALAGEPD--VPISVDTFNA---EVAEAALKAGA 97 (258)
T ss_pred HHHHHHHHHHHCCC-CEEEECCCcCCCCCCcC-CHHHHHHHHHHHHHHHHhcCC--CeEEEeCCcH---HHHHHHHHhCC
Confidence 33444455678899 99987333334555553 222333457888999987777 7999998753 33445555566
Q ss_pred cceecccccccccCCCceeecCcchhHHHHHhcCC
Q psy9039 117 DFIRAESFVFGHMADEGLMNAQAGPLLRYRKQIGA 151 (251)
Q Consensus 117 ~Fir~~~~~~~~~~~~Gli~~da~e~~~~r~~l~~ 151 (251)
+.+-. ..|. ..+ .+..+..+++++
T Consensus 98 ~iINd---------is~~-~~~-~~~~~l~~~~~~ 121 (258)
T cd00423 98 DIIND---------VSGG-RGD-PEMAPLAAEYGA 121 (258)
T ss_pred CEEEe---------CCCC-CCC-hHHHHHHHHcCC
Confidence 66553 1111 111 456677777776
|
This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH. |
| >cd00945 Aldolase_Class_I Class I aldolases | Back alignment and domain information |
|---|
Probab=85.23 E-value=2.4 Score=34.87 Aligned_cols=60 Identities=20% Similarity=0.282 Sum_probs=40.2
Q ss_pred ccHHHHHHHhhhccccEEEecCCCCCCCCCHHHHHHHHhcC---CCCEEEecCC-C----h----HhHHHhhc--CCEEE
Q psy9039 173 VDITETAKAASFFLSDGLIITGNATGDPADVSQLMSVKNAV---DLPILIGSGV-T----S----DNVEHYMT--ADALI 238 (251)
Q Consensus 173 ~~i~~~a~~a~~~~~D~v~VTG~~~g~~~~~~~l~~vr~~~---~~PV~vG~GI-~----~----~~v~~~~~--ADGvI 238 (251)
..+++.++.....|+|++.++| +.++.+++.. ++|+++|-|- + . +.++++.+ ||++.
T Consensus 13 ~~~~~~~~~~~~~gv~gi~~~g---------~~i~~~~~~~~~~~~~v~~~v~~~~~~~~~~~~~~~a~~a~~~Gad~i~ 83 (201)
T cd00945 13 EDIAKLCDEAIEYGFAAVCVNP---------GYVRLAADALAGSDVPVIVVVGFPTGLTTTEVKVAEVEEAIDLGADEID 83 (201)
T ss_pred HHHHHHHHHHHHhCCcEEEECH---------HHHHHHHHHhCCCCCeEEEEecCCCCCCcHHHHHHHHHHHHHcCCCEEE
Confidence 3455555555557999999998 5566665554 4899988877 3 2 33445554 99998
Q ss_pred Eec
Q psy9039 239 IGS 241 (251)
Q Consensus 239 VGS 241 (251)
+-.
T Consensus 84 v~~ 86 (201)
T cd00945 84 VVI 86 (201)
T ss_pred Eec
Confidence 753
|
The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin. |
| >PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=84.97 E-value=3.1 Score=37.94 Aligned_cols=63 Identities=13% Similarity=0.112 Sum_probs=43.1
Q ss_pred cHHHHHHHhhhccccEEEecCCCCCCCCCHHHHHHHHhc--CCCCEEEecCCChHhHHHhhc--CCEEEEeceE
Q psy9039 174 DITETAKAASFFLSDGLIITGNATGDPADVSQLMSVKNA--VDLPILIGSGVTSDNVEHYMT--ADALIIGSHF 243 (251)
Q Consensus 174 ~i~~~a~~a~~~~~D~v~VTG~~~g~~~~~~~l~~vr~~--~~~PV~vG~GI~~~~v~~~~~--ADGvIVGS~~ 243 (251)
++ +.+..+...|+|.+-.-.. +.+.++++.+. .++.+-+.||||.+|++++.. +|.+.+|+-.
T Consensus 206 tl-eea~~a~~agaDiImLDnm------spe~l~~av~~~~~~~~leaSGGI~~~ni~~yA~tGVD~Is~galt 272 (290)
T PRK06559 206 SL-AAAEEAAAAGADIIMLDNM------SLEQIEQAITLIAGRSRIECSGNIDMTTISRFRGLAIDYVSSGSLT 272 (290)
T ss_pred CH-HHHHHHHHcCCCEEEECCC------CHHHHHHHHHHhcCceEEEEECCCCHHHHHHHHhcCCCEEEeCccc
Confidence 44 4456665679999866322 23333332222 157899999999999999996 9999999744
|
|
| >PRK08185 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=84.97 E-value=21 Score=32.42 Aligned_cols=59 Identities=17% Similarity=0.333 Sum_probs=40.1
Q ss_pred ccccEEEe-----cCC-CCCCCC--CHHHHHHHHhcCCCCEEEecCC-C-hHhHHHhhc--CCEEEEeceE
Q psy9039 185 FLSDGLII-----TGN-ATGDPA--DVSQLMSVKNAVDLPILIGSGV-T-SDNVEHYMT--ADALIIGSHF 243 (251)
Q Consensus 185 ~~~D~v~V-----TG~-~~g~~~--~~~~l~~vr~~~~~PV~vG~GI-~-~~~v~~~~~--ADGvIVGS~~ 243 (251)
-|+|++.+ -|. .++..+ +++.|+++++.+++|+++=||+ . .+++++... .-=+=|+|.+
T Consensus 161 TgvD~LAvaiGt~HG~y~~~~kp~L~~e~l~~I~~~~~iPLVlHGgsg~~~e~~~~ai~~GI~KiNi~T~l 231 (283)
T PRK08185 161 TGVDTLAVAIGTAHGIYPKDKKPELQMDLLKEINERVDIPLVLHGGSANPDAEIAESVQLGVGKINISSDM 231 (283)
T ss_pred hCCCEEEeccCcccCCcCCCCCCCcCHHHHHHHHHhhCCCEEEECCCCCCHHHHHHHHHCCCeEEEeChHH
Confidence 48999988 443 222122 4688999999999999998888 3 577887764 4434444443
|
|
| >PLN02716 nicotinate-nucleotide diphosphorylase (carboxylating) | Back alignment and domain information |
|---|
Probab=84.93 E-value=3.7 Score=37.69 Aligned_cols=59 Identities=15% Similarity=0.104 Sum_probs=41.8
Q ss_pred ccccEEEecCCCC--C-CCCCHHHHHHHHhcC--CCCEEEecCCChHhHHHhhc--CCEEEEeceE
Q psy9039 185 FLSDGLIITGNAT--G-DPADVSQLMSVKNAV--DLPILIGSGVTSDNVEHYMT--ADALIIGSHF 243 (251)
Q Consensus 185 ~~~D~v~VTG~~~--g-~~~~~~~l~~vr~~~--~~PV~vG~GI~~~~v~~~~~--ADGvIVGS~~ 243 (251)
.|+|.+-.-..+. . ...+.+.+++..+.. ..|+-+.||||.+|++++.. .|.+.+|+-.
T Consensus 228 agaDiImLDnm~~~~~~~~~~~e~l~~av~~~~~~~~lEaSGGIt~~ni~~yA~tGVD~Is~Galt 293 (308)
T PLN02716 228 TSLTRVMLDNMVVPLENGDVDVSMLKEAVELINGRFETEASGNVTLDTVHKIGQTGVTYISSGALT 293 (308)
T ss_pred CCCCEEEeCCCcccccccCCCHHHHHHHHHhhCCCceEEEECCCCHHHHHHHHHcCCCEEEeCccc
Confidence 7899987755421 1 122455555444332 47899999999999999997 9999998744
|
|
| >KOG0538|consensus | Back alignment and domain information |
|---|
Probab=84.71 E-value=3.4 Score=38.02 Aligned_cols=40 Identities=13% Similarity=0.336 Sum_probs=34.4
Q ss_pred CHHHHHHHHhcCCCCEEEecCCChHhHHHhhc--CCEEEEec
Q psy9039 202 DVSQLMSVKNAVDLPILIGSGVTSDNVEHYMT--ADALIIGS 241 (251)
Q Consensus 202 ~~~~l~~vr~~~~~PV~vG~GI~~~~v~~~~~--ADGvIVGS 241 (251)
+++.|+-+|+.+++||++=|=+|.+++..+.+ ++|+||.-
T Consensus 211 ~W~Di~wLr~~T~LPIvvKGilt~eDA~~Ave~G~~GIIVSN 252 (363)
T KOG0538|consen 211 SWKDIKWLRSITKLPIVVKGVLTGEDARKAVEAGVAGIIVSN 252 (363)
T ss_pred ChhhhHHHHhcCcCCeEEEeecccHHHHHHHHhCCceEEEeC
Confidence 57899999999999999876669999888876 99999964
|
|
| >PRK09426 methylmalonyl-CoA mutase; Reviewed | Back alignment and domain information |
|---|
Probab=84.59 E-value=1.8 Score=44.26 Aligned_cols=66 Identities=15% Similarity=0.171 Sum_probs=48.8
Q ss_pred ccHHHHHHHhhhccccEEEecCCCCCCCCCH-HHHHHHHhcC--CCCEEEecCCChHhHHHhhc--CCEEE
Q psy9039 173 VDITETAKAASFFLSDGLIITGNATGDPADV-SQLMSVKNAV--DLPILIGSGVTSDNVEHYMT--ADALI 238 (251)
Q Consensus 173 ~~i~~~a~~a~~~~~D~v~VTG~~~g~~~~~-~~l~~vr~~~--~~PV~vG~GI~~~~v~~~~~--ADGvI 238 (251)
.+.+++++.+...++|.+++++..+...... ..++.+|+.- +++|++||.+.++....+.. +|++|
T Consensus 620 ~s~e~~v~aa~~~~a~ivvlcs~d~~~~e~~~~l~~~Lk~~G~~~v~vl~GG~~~~~~~~~l~~aGvD~~i 690 (714)
T PRK09426 620 QTPEEAARQAVENDVHVVGVSSLAAGHKTLVPALIEALKKLGREDIMVVVGGVIPPQDYDFLYEAGVAAIF 690 (714)
T ss_pred CCHHHHHHHHHHcCCCEEEEeccchhhHHHHHHHHHHHHhcCCCCcEEEEeCCCChhhHHHHHhCCCCEEE
Confidence 5677777777778999999999876554444 5677788773 57889888877766655554 88876
|
|
| >PF00490 ALAD: Delta-aminolevulinic acid dehydratase; InterPro: IPR001731 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway [] | Back alignment and domain information |
|---|
Probab=84.59 E-value=6 Score=36.50 Aligned_cols=41 Identities=22% Similarity=0.253 Sum_probs=26.6
Q ss_pred HHHHHHHhh--h-ccccEEEecCCCCCCCCCHHHHHHHHhcCCCCEEE
Q psy9039 175 ITETAKAAS--F-FLSDGLIITGNATGDPADVSQLMSVKNAVDLPILI 219 (251)
Q Consensus 175 i~~~a~~a~--~-~~~D~v~VTG~~~g~~~~~~~l~~vr~~~~~PV~v 219 (251)
..+..+.+. . -|+|.+.|- .+ -+-++.|+++|+.+++|+++
T Consensus 229 ~~EAlre~~~D~~EGAD~lMVK---Pa-l~YLDIi~~~k~~~~~P~~a 272 (324)
T PF00490_consen 229 RREALREAELDIEEGADILMVK---PA-LPYLDIIRRVKERFDLPVAA 272 (324)
T ss_dssp HHHHHHHHHHHHHTT-SEEEEE---SS-GGGHHHHHHHHHHCTS-EEE
T ss_pred HHHHHHHhhhhHhhCCCEEEee---cc-hhHHHHHHHHHHhcCCCEEE
Confidence 344445554 2 599999983 21 22368899999999999986
|
The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) []. This entry represents porphobilinogen (PBG) synthase (PBGS, or 5-aminoaevulinic acid dehydratase, or ALAD, 4.2.1.24 from EC), which functions during the second stage of tetrapyrrole biosynthesis. This enzyme catalyses a Knorr-type condensation reaction between two molecules of ALA to generate porphobilinogen, the pyrrolic building block used in later steps []. The structure of the enzyme is based on a TIM barrel topology made up of eight identical subunits, where each subunit binds to a metal ion that is essential for activity, usually zinc (in yeast, mammals and certain bacteria) or magnesium (in plants and other bacteria). A lysine has been implicated in the catalytic mechanism []. The lack of PBGS enzyme causes a rare porphyric disorder known as ALAD porphyria, which appears to involve conformational changes in the enzyme [.; GO: 0004655 porphobilinogen synthase activity, 0046872 metal ion binding, 0033014 tetrapyrrole biosynthetic process; PDB: 2C1H_A 1W1Z_A 1GZG_B 1W5O_B 1W5Q_B 2C18_A 1B4K_A 2C19_B 1W56_B 2C13_B .... |
| >cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes | Back alignment and domain information |
|---|
Probab=84.57 E-value=5.1 Score=36.28 Aligned_cols=67 Identities=13% Similarity=0.219 Sum_probs=47.9
Q ss_pred HHHHHHHhhhccccEEEecCCCC--CCCCCHHHHHHHHhcCCCCEEEecCCChHhHHHhhc--CCEEEEec
Q psy9039 175 ITETAKAASFFLSDGLIITGNAT--GDPADVSQLMSVKNAVDLPILIGSGVTSDNVEHYMT--ADALIIGS 241 (251)
Q Consensus 175 i~~~a~~a~~~~~D~v~VTG~~~--g~~~~~~~l~~vr~~~~~PV~vG~GI~~~~v~~~~~--ADGvIVGS 241 (251)
+.+.++.+...++|++.++-.-. +.....+.++++|+.+++||++-.=.+++.+..+.+ +|+++|.-
T Consensus 131 ~~~~i~~~~~~g~~~i~l~~~~p~~~~~~~~~~i~~l~~~~~~pvivK~v~s~~~a~~a~~~G~d~I~v~~ 201 (299)
T cd02809 131 TEDLLRRAEAAGYKALVLTVDTPVLGRRLTWDDLAWLRSQWKGPLILKGILTPEDALRAVDAGADGIVVSN 201 (299)
T ss_pred HHHHHHHHHHcCCCEEEEecCCCCCCCCCCHHHHHHHHHhcCCCEEEeecCCHHHHHHHHHCCCCEEEEcC
Confidence 34444555556899988865422 112346889999999999999985447888888876 99999964
|
This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. |
| >PRK00230 orotidine 5'-phosphate decarboxylase; Reviewed | Back alignment and domain information |
|---|
Probab=84.55 E-value=2 Score=37.56 Aligned_cols=59 Identities=19% Similarity=0.305 Sum_probs=39.0
Q ss_pred HHHhhhccccEEEecCCCCCCCCCHHHHHHHHhcC-CCCEEEecCCChH-----------hHHHhhc--CCEEEEeceEe
Q psy9039 179 AKAASFFLSDGLIITGNATGDPADVSQLMSVKNAV-DLPILIGSGVTSD-----------NVEHYMT--ADALIIGSHFK 244 (251)
Q Consensus 179 a~~a~~~~~D~v~VTG~~~g~~~~~~~l~~vr~~~-~~PV~vG~GI~~~-----------~v~~~~~--ADGvIVGS~~~ 244 (251)
++.+...|+|++.++... +.++|+.. +..+.+-.||+++ +..++++ ||++|||..+-
T Consensus 141 a~~a~~~g~dgvv~~~~~---------~~~ir~~~~~~~~~v~pGI~~~g~~~~dq~~~~~~~~ai~~Gad~iVvGR~I~ 211 (230)
T PRK00230 141 AKLAQEAGLDGVVCSAQE---------AAAIREATGPDFLLVTPGIRPAGSDAGDQKRVMTPAQAIAAGSDYIVVGRPIT 211 (230)
T ss_pred HHHHHHcCCeEEEeChHH---------HHHHHhhcCCceEEEcCCcCCCCCCcchHHHHhCHHHHHHcCCCEEEECCccc
Confidence 344444688988666322 34555554 4556777888765 5777775 99999999886
Q ss_pred ec
Q psy9039 245 QG 246 (251)
Q Consensus 245 ~~ 246 (251)
+.
T Consensus 212 ~a 213 (230)
T PRK00230 212 QA 213 (230)
T ss_pred CC
Confidence 54
|
|
| >KOG1436|consensus | Back alignment and domain information |
|---|
Probab=84.44 E-value=0.68 Score=42.67 Aligned_cols=75 Identities=19% Similarity=0.325 Sum_probs=51.8
Q ss_pred ccHHHHHHHhhhccccEEEecCC---C------------CCC---CC----CHHHHHHHHhcC--CCCEEEecCC-ChHh
Q psy9039 173 VDITETAKAASFFLSDGLIITGN---A------------TGD---PA----DVSQLMSVKNAV--DLPILIGSGV-TSDN 227 (251)
Q Consensus 173 ~~i~~~a~~a~~~~~D~v~VTG~---~------------~g~---~~----~~~~l~~vr~~~--~~PV~vG~GI-~~~~ 227 (251)
..+.+++........|++||++. + +|. ++ ..+.++++...+ ++|||==||| +.++
T Consensus 266 ~el~dia~v~kk~~idg~IvsnttVsrp~~~~~~~~~~etGGLsG~plk~~st~~vR~mY~lt~g~IpiIG~GGV~SG~D 345 (398)
T KOG1436|consen 266 KELKDIALVVKKLNIDGLIVSNTTVSRPKASLVNKLKEETGGLSGPPLKPISTNTVRAMYTLTRGKIPIIGCGGVSSGKD 345 (398)
T ss_pred HHHHHHHHHHHHhCccceeecCceeecCccccccccccccCCCCCCccchhHHHHHHHHHHhccCCCceEeecCccccHh
Confidence 34555655544468999999884 1 221 11 235566666665 7999999999 6677
Q ss_pred HHHhhc--CCEEEEeceEeecC
Q psy9039 228 VEHYMT--ADALIIGSHFKQGG 247 (251)
Q Consensus 228 v~~~~~--ADGvIVGS~~~~~g 247 (251)
+-+.+. |.-++++|+|..+|
T Consensus 346 A~EkiraGASlvQlyTal~yeG 367 (398)
T KOG1436|consen 346 AYEKIRAGASLVQLYTALVYEG 367 (398)
T ss_pred HHHHHhcCchHHHHHHHHhhcC
Confidence 666664 99999999998887
|
|
| >COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=84.13 E-value=2 Score=39.49 Aligned_cols=77 Identities=25% Similarity=0.283 Sum_probs=49.2
Q ss_pred CCCcCCCCccEEEEeecCC-CCccccC------------CCchHHHHHHHHHHHHHHHhCCCCcc-EEEEEeeCChHHHH
Q psy9039 43 PPSVPVGVQHGVIVENMHD-VPYVLEA------------ESGPEITANMTRLCAEIRKVLPPSVP-VGVQILSGCNKAAL 108 (251)
Q Consensus 43 ~~l~~~Gv~D~i~ieN~~~-~Pf~~p~------------~~gp~i~aa~~~~i~~vr~~~~~~~P-~Gvn~~~N~~~~~~ 108 (251)
+++.++|+ |+|.+.|-.. -+..+.. -.||-+..-..++++++++++...+| +|+=...+. ..++
T Consensus 180 ~~~~~~g~-Dgl~~~NT~~~~~~id~~~~~~~~~~~~GGLSG~~ikp~al~~v~~l~~~~~~~ipIIGvGGI~s~-~DA~ 257 (310)
T COG0167 180 KAAEEAGA-DGLIAINTTKSGMKIDLETKKPVLANETGGLSGPPLKPIALRVVAELYKRLGGDIPIIGVGGIETG-EDAL 257 (310)
T ss_pred HHHHHcCC-cEEEEEeeccccccccccccccccCcCCCCcCcccchHHHHHHHHHHHHhcCCCCcEEEecCcCcH-HHHH
Confidence 56789999 9999999332 3321111 15677777778899999988654356 455444432 3444
Q ss_pred HHHHHcCccceecc
Q psy9039 109 ATAQAAGLDFIRAE 122 (251)
Q Consensus 109 ~ia~a~g~~Fir~~ 122 (251)
.. ..+||+.+++.
T Consensus 258 E~-i~aGA~~vQv~ 270 (310)
T COG0167 258 EF-ILAGASAVQVG 270 (310)
T ss_pred HH-HHcCCchheee
Confidence 44 45778888863
|
|
| >cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain | Back alignment and domain information |
|---|
Probab=84.10 E-value=1.8 Score=40.61 Aligned_cols=38 Identities=18% Similarity=0.412 Sum_probs=33.8
Q ss_pred CHHHHHHHHhcCCCCEEEecCC-ChHhHHHhhc--CCEEEEe
Q psy9039 202 DVSQLMSVKNAVDLPILIGSGV-TSDNVEHYMT--ADALIIG 240 (251)
Q Consensus 202 ~~~~l~~vr~~~~~PV~vG~GI-~~~~v~~~~~--ADGvIVG 240 (251)
.++.|+.+|+.++.|+++. || +++++..+.+ +||++|+
T Consensus 224 ~w~~i~~ir~~~~~pviiK-gV~~~eda~~a~~~G~d~I~VS 264 (361)
T cd04736 224 NWQDLRWLRDLWPHKLLVK-GIVTAEDAKRCIELGADGVILS 264 (361)
T ss_pred CHHHHHHHHHhCCCCEEEe-cCCCHHHHHHHHHCCcCEEEEC
Confidence 4688999999999999998 58 8999998886 9999986
|
MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). |
| >cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain | Back alignment and domain information |
|---|
Probab=83.87 E-value=9.6 Score=34.13 Aligned_cols=174 Identities=17% Similarity=0.094 Sum_probs=0.0
Q ss_pred HHHHHhhCCCCcCCCCccEEEEeecCCCCc---------cccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEee----
Q psy9039 35 CAEIRKVLPPSVPVGVQHGVIVENMHDVPY---------VLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILS---- 101 (251)
Q Consensus 35 ~~~a~~~a~~l~~~Gv~D~i~ieN~~~~Pf---------~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~---- 101 (251)
.+.-++-++.|.+.|+ |.|++ |.|- +.. -.+.++++++..++. ++....-.
T Consensus 20 ~~~~~~ia~~L~~~Gv-~~iE~----G~~a~~~~~~~~~~~~----------~~e~i~~~~~~~~~~-~l~~~~r~~~~~ 83 (275)
T cd07937 20 TEDMLPIAEALDEAGF-FSLEV----WGGATFDVCMRFLNED----------PWERLRELRKAMPNT-PLQMLLRGQNLV 83 (275)
T ss_pred HHHHHHHHHHHHHcCC-CEEEc----cCCcchhhhccccCCC----------HHHHHHHHHHhCCCC-ceehhccccccc
Q ss_pred -------CChHHHHHHHHHcCccceecccccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHhhccCCCCCCccc
Q psy9039 102 -------GCNKAALATAQAAGLDFIRAESFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSSHAITADVD 174 (251)
Q Consensus 102 -------N~~~~~~~ia~a~g~~Fir~~~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~k~~~~~~~~~~~ 174 (251)
|....-+..+...|.+++|+..... -.....+..++.++.|. .+...+.-..+.. .+...
T Consensus 84 ~~~~~p~~~~~~di~~~~~~g~~~iri~~~~~--------~~~~~~~~i~~ak~~G~---~v~~~i~~~~~~~--~~~~~ 150 (275)
T cd07937 84 GYRHYPDDVVELFVEKAAKNGIDIFRIFDALN--------DVRNLEVAIKAVKKAGK---HVEGAICYTGSPV--HTLEY 150 (275)
T ss_pred CccCCCcHHHHHHHHHHHHcCCCEEEEeecCC--------hHHHHHHHHHHHHHCCC---eEEEEEEecCCCC--CCHHH
Q ss_pred HHHHHHHhhhccccEEEecCCCCCCCCCH--HHHHHHHhcCCCCEEE----ecCCChHhHHHhhc--CCEE
Q psy9039 175 ITETAKAASFFLSDGLIITGNATGDPADV--SQLMSVKNAVDLPILI----GSGVTSDNVEHYMT--ADAL 237 (251)
Q Consensus 175 i~~~a~~a~~~~~D~v~VTG~~~g~~~~~--~~l~~vr~~~~~PV~v----G~GI~~~~v~~~~~--ADGv 237 (251)
+.+.++.+..+|+|.+.+.=+--...|.. ++++++|+..++|+-+ -+|....|.-..+. |+-+
T Consensus 151 ~~~~~~~~~~~Ga~~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~l~~H~Hnd~GlA~aN~laA~~aGa~~v 221 (275)
T cd07937 151 YVKLAKELEDMGADSICIKDMAGLLTPYAAYELVKALKKEVGLPIHLHTHDTSGLAVATYLAAAEAGVDIV 221 (275)
T ss_pred HHHHHHHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHhCCCeEEEEecCCCChHHHHHHHHHHhCCCEE
|
This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex |
| >COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=83.79 E-value=7.7 Score=36.05 Aligned_cols=154 Identities=18% Similarity=0.184 Sum_probs=85.7
Q ss_pred HHHhhCCCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHHHHHHHHcCc
Q psy9039 37 EIRKVLPPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQAAGL 116 (251)
Q Consensus 37 ~a~~~a~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g~ 116 (251)
.-++.++.|.+.|+ |.|-+ -. | ..+ .+..+.+++++++ +|+...+.+|. ..++.. ...|.
T Consensus 37 aTv~QI~~L~~aG~-dIVRv----tv----~---~~e----~A~A~~~Ik~~~~--vPLVaDiHf~~-rla~~~-~~~g~ 96 (361)
T COG0821 37 ATVAQIKALERAGC-DIVRV----TV----P---DME----AAEALKEIKQRLN--VPLVADIHFDY-RLALEA-AECGV 96 (361)
T ss_pred HHHHHHHHHHHcCC-CEEEE----ec----C---CHH----HHHHHHHHHHhCC--CCEEEEeeccH-HHHHHh-hhcCc
Confidence 33444489999999 99964 22 2 222 2345667788878 89999999984 333332 23446
Q ss_pred cceecccccccccCCCceeecCcchhHHHHHhcCCCcchh-------hhhhHhhccCCCCCCcccHHHHHHHhh---hcc
Q psy9039 117 DFIRAESFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLV-------FTDIKKKHSSHAITADVDITETAKAAS---FFL 186 (251)
Q Consensus 117 ~Fir~~~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i-------~a~v~~k~~~~~~~~~~~i~~~a~~a~---~~~ 186 (251)
+=+|.|. | ..+.. ....++.+.+++.+. .+.+ =.++..|++.| |++.-++...+.++ ..+
T Consensus 97 ~k~RINP--G-Nig~~----~~v~~vVe~Ak~~g~-piRIGVN~GSLek~~~~ky~~p--t~ealveSAl~~a~~~e~l~ 166 (361)
T COG0821 97 DKVRINP--G-NIGFK----DRVREVVEAAKDKGI-PIRIGVNAGSLEKRLLEKYGGP--TPEALVESALEHAELLEELG 166 (361)
T ss_pred ceEEECC--c-ccCcH----HHHHHHHHHHHHcCC-CEEEecccCchhHHHHHHhcCC--CHHHHHHHHHHHHHHHHHCC
Confidence 7788751 1 11110 025666777777665 3333 22556676655 33322222223333 123
Q ss_pred ccEEEecCCCCCCCCCHHHHHHHHhcCCCCEEEe
Q psy9039 187 SDGLIITGNATGDPADVSQLMSVKNAVDLPILIG 220 (251)
Q Consensus 187 ~D~v~VTG~~~g~~~~~~~l~~vr~~~~~PV~vG 220 (251)
-+-+.+|=.........+..+.+.+.++.|+=+|
T Consensus 167 f~~i~iS~K~Sdv~~~v~aYr~lA~~~dyPLHLG 200 (361)
T COG0821 167 FDDIKVSVKASDVQLMVAAYRLLAKRCDYPLHLG 200 (361)
T ss_pred CCcEEEEEEcCCHHHHHHHHHHHHHhcCCCcccc
Confidence 3455566554433333456667788889888765
|
|
| >PF04481 DUF561: Protein of unknown function (DUF561); InterPro: IPR007570 Protein in this entry are of unknown function and are found in cyanobacteria and the chloroplasts of algae | Back alignment and domain information |
|---|
Probab=83.76 E-value=3.5 Score=36.10 Aligned_cols=70 Identities=26% Similarity=0.262 Sum_probs=52.0
Q ss_pred cccHHHHHHHhhhccccEEEecCCCCCCCCCHHHHHHHHhcCCCCEEEecCCChHhHHHhh-c-CCEEEEec--eEeecC
Q psy9039 172 DVDITETAKAASFFLSDGLIITGNATGDPADVSQLMSVKNAVDLPILIGSGVTSDNVEHYM-T-ADALIIGS--HFKQGG 247 (251)
Q Consensus 172 ~~~i~~~a~~a~~~~~D~v~VTG~~~g~~~~~~~l~~vr~~~~~PV~vG~GI~~~~v~~~~-~-ADGvIVGS--~~~~~g 247 (251)
..++..++++|+..|++.+ ....+.++++.+|+.+++|||| +++.|+.+.+.. . ||-+=+|- +|-..|
T Consensus 26 ~~~V~~i~~AA~~ggAt~v-------DIAadp~LV~~~~~~s~lPICV-SaVep~~f~~aV~AGAdliEIGNfDsFY~qG 97 (242)
T PF04481_consen 26 AESVAAIVKAAEIGGATFV-------DIAADPELVKLAKSLSNLPICV-SAVEPELFVAAVKAGADLIEIGNFDSFYAQG 97 (242)
T ss_pred HHHHHHHHHHHHccCCceE-------EecCCHHHHHHHHHhCCCCeEe-ecCCHHHHHHHHHhCCCEEEecchHHHHhcC
Confidence 3567777788877788875 3355788999999999999998 679998866555 4 99998884 344444
Q ss_pred ee
Q psy9039 248 RT 249 (251)
Q Consensus 248 ~~ 249 (251)
+.
T Consensus 98 r~ 99 (242)
T PF04481_consen 98 RR 99 (242)
T ss_pred Ce
Confidence 43
|
As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis. |
| >cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=83.72 E-value=14 Score=32.56 Aligned_cols=150 Identities=20% Similarity=0.180 Sum_probs=76.0
Q ss_pred CCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHHHHHHHHcCccceecc
Q psy9039 43 PPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQAAGLDFIRAE 122 (251)
Q Consensus 43 ~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g~~Fir~~ 122 (251)
+.|.+.|+ |.|++ |+|...+ . -...++++++... +.-+..+.......+..+...|.+.++..
T Consensus 27 ~~L~~~Gv-~~iE~----g~p~~~~---~------~~e~~~~l~~~~~---~~~~~~~~r~~~~~v~~a~~~g~~~i~i~ 89 (259)
T cd07939 27 RALDEAGV-DEIEV----GIPAMGE---E------EREAIRAIVALGL---PARLIVWCRAVKEDIEAALRCGVTAVHIS 89 (259)
T ss_pred HHHHHcCC-CEEEE----ecCCCCH---H------HHHHHHHHHhcCC---CCEEEEeccCCHHHHHHHHhCCcCEEEEE
Confidence 66889999 99986 7776532 1 1234556655323 12233334333455666677788888863
Q ss_pred cccccccCCC------c----eeecCcchhHHHHHhcCCCcchhhhhhHhhccCCCCCCcccHHHHHHHhhhccccEEEe
Q psy9039 123 SFVFGHMADE------G----LMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSSHAITADVDITETAKAASFFLSDGLII 192 (251)
Q Consensus 123 ~~~~~~~~~~------G----li~~da~e~~~~r~~l~~~~i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~~~~~D~v~V 192 (251)
. ..++. + -......+..++.++.|. .+.+ ....+.. ++...+.+.++.+..+|+|.+.+
T Consensus 90 ~----~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~-~v~~----~~~~~~~--~~~~~~~~~~~~~~~~G~~~i~l 158 (259)
T cd07939 90 I----PVSDIHLAHKLGKDRAWVLDQLRRLVGRAKDRGL-FVSV----GAEDASR--ADPDFLIEFAEVAQEAGADRLRF 158 (259)
T ss_pred E----ecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCC-eEEE----eeccCCC--CCHHHHHHHHHHHHHCCCCEEEe
Confidence 1 11110 0 001123345556666664 2322 1111111 22344555555555578888776
Q ss_pred cCCCCCC--CCCH-HHHHHHHhcCCCCEEEecCC
Q psy9039 193 TGNATGD--PADV-SQLMSVKNAVDLPILIGSGV 223 (251)
Q Consensus 193 TG~~~g~--~~~~-~~l~~vr~~~~~PV~vG~GI 223 (251)
-=+- |. +... +++..+|+..++| +|+-.
T Consensus 159 ~DT~-G~~~P~~v~~lv~~l~~~~~~~--l~~H~ 189 (259)
T cd07939 159 ADTV-GILDPFTTYELIRRLRAATDLP--LEFHA 189 (259)
T ss_pred CCCC-CCCCHHHHHHHHHHHHHhcCCe--EEEEe
Confidence 4331 22 2233 5677888876655 45544
|
FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox |
| >PF01645 Glu_synthase: Conserved region in glutamate synthase; InterPro: IPR002932 Ferredoxin-dependent glutamate synthases have been implicated in a number of functions including photorespiration in Arabidopsis where they may also play a role in primary nitrogen assimilation in roots [] | Back alignment and domain information |
|---|
Probab=83.62 E-value=1.7 Score=40.94 Aligned_cols=70 Identities=24% Similarity=0.320 Sum_probs=40.5
Q ss_pred HHHHHHHhhhccccEEEecCCCCCCC------------CCHHHHHHHHhc-------CCCCEEEecCC-ChHhHHHhhc-
Q psy9039 175 ITETAKAASFFLSDGLIITGNATGDP------------ADVSQLMSVKNA-------VDLPILIGSGV-TSDNVEHYMT- 233 (251)
Q Consensus 175 i~~~a~~a~~~~~D~v~VTG~~~g~~------------~~~~~l~~vr~~-------~~~PV~vG~GI-~~~~v~~~~~- 233 (251)
.+.++..+...++|.+.+.|..-|.. +....+.++.+. -.+.+++.||+ |+.++...+.
T Consensus 216 ~~~~~~~~~~ag~D~ItIDG~~GGTGAap~~~~d~~GlP~~~~l~~a~~~L~~~glr~~V~Li~sGgl~t~~dv~kalaL 295 (368)
T PF01645_consen 216 VEDIAAGAAKAGADFITIDGAEGGTGAAPLTSMDHVGLPTEYALARAHQALVKNGLRDRVSLIASGGLRTGDDVAKALAL 295 (368)
T ss_dssp HHHHHHHHHHTT-SEEEEE-TT---SSEECCHHHHC---HHHHHHHHHHHHHCTT-CCCSEEEEESS--SHHHHHHHHHC
T ss_pred HHHHHHhhhhccCCEEEEeCCCCCCCCCchhHHhhCCCcHHHHHHHHHHHHHHcCCCCceEEEEeCCccCHHHHHHHHhc
Confidence 34444434457999999988754431 111223333322 14899999999 8999888876
Q ss_pred -CCEEEEeceEe
Q psy9039 234 -ADALIIGSHFK 244 (251)
Q Consensus 234 -ADGvIVGS~~~ 244 (251)
||+|-+||+++
T Consensus 296 GAD~v~igt~~l 307 (368)
T PF01645_consen 296 GADAVYIGTAAL 307 (368)
T ss_dssp T-SEEE-SHHHH
T ss_pred CCCeeEecchhh
Confidence 99999998764
|
This region is expressed as a seperate subunit in the glutamate synthase alpha subunit from archaebacteria, or part of a large multidomain enzyme in other organisms. The aligned region of these proteins contains a putative FMN binding site and Fe-S cluster.; GO: 0015930 glutamate synthase activity, 0016638 oxidoreductase activity, acting on the CH-NH2 group of donors, 0006537 glutamate biosynthetic process, 0055114 oxidation-reduction process; PDB: 1EA0_A 2VDC_E 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A. |
| >PRK09016 quinolinate phosphoribosyltransferase; Validated | Back alignment and domain information |
|---|
Probab=83.56 E-value=3.5 Score=37.63 Aligned_cols=62 Identities=11% Similarity=0.118 Sum_probs=42.0
Q ss_pred HHHHHHhhhccccEEEecCCCCCCCCCHHHHHHHHhc--CCCCEEEecCCChHhHHHhhc--CCEEEEeceE
Q psy9039 176 TETAKAASFFLSDGLIITGNATGDPADVSQLMSVKNA--VDLPILIGSGVTSDNVEHYMT--ADALIIGSHF 243 (251)
Q Consensus 176 ~~~a~~a~~~~~D~v~VTG~~~g~~~~~~~l~~vr~~--~~~PV~vG~GI~~~~v~~~~~--ADGvIVGS~~ 243 (251)
.+.+..+...|+|.+-.-.. +.+.++++.+. .++.+.+.||||.+|++++.. +|.+.+|+-.
T Consensus 218 leea~ea~~~gaDiI~LDn~------s~e~~~~av~~~~~~~~ieaSGGI~~~ni~~yA~tGVD~Is~galt 283 (296)
T PRK09016 218 LDELDQALKAGADIIMLDNF------TTEQMREAVKRTNGRALLEVSGNVTLETLREFAETGVDFISVGALT 283 (296)
T ss_pred HHHHHHHHHcCCCEEEeCCC------ChHHHHHHHHhhcCCeEEEEECCCCHHHHHHHHhcCCCEEEeCccc
Confidence 34445555578898765322 22333332222 257899999999999999997 9999999754
|
|
| >cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=83.52 E-value=7.5 Score=34.43 Aligned_cols=153 Identities=18% Similarity=0.256 Sum_probs=77.2
Q ss_pred CCCcCCCCccEEEEeecCCCC---c--cccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEE---eeCChHHHHHHHHHc
Q psy9039 43 PPSVPVGVQHGVIVENMHDVP---Y--VLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQI---LSGCNKAALATAQAA 114 (251)
Q Consensus 43 ~~l~~~Gv~D~i~ieN~~~~P---f--~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~---~~N~~~~~~~ia~a~ 114 (251)
+.|.+.|+ |.||+-+-.++. | ..+..+ -...++++++..+. ..+.+++ ..| ...+..+...
T Consensus 29 ~~L~~~Gv-~~iEvg~~~~~~~~~~~~~~~~~~-------~~e~i~~~~~~~~~-~~~~~~~~~~~~~--~~~i~~a~~~ 97 (263)
T cd07943 29 RALDAAGV-PLIEVGHGDGLGGSSLNYGFAAHT-------DEEYLEAAAEALKQ-AKLGVLLLPGIGT--VDDLKMAADL 97 (263)
T ss_pred HHHHHcCC-CEEEeecCCCCCCcccccCCCCCC-------hHHHHHHHHHhccC-CEEEEEecCCccC--HHHHHHHHHc
Confidence 66889999 999874321111 1 011111 12244555554333 3665554 222 4456666777
Q ss_pred CccceecccccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHhhccCCCCCCcccHHHHHHHhhhccccEEEecC
Q psy9039 115 GLDFIRAESFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSSHAITADVDITETAKAASFFLSDGLIITG 194 (251)
Q Consensus 115 g~~Fir~~~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~~~~~D~v~VTG 194 (251)
|.+.+|... ...+ .....+..++.+..|. .+.+ .+ ..... .+...+.+.++.+...|+|.+.+-=
T Consensus 98 g~~~iri~~----~~s~----~~~~~~~i~~ak~~G~-~v~~--~~--~~~~~--~~~~~~~~~~~~~~~~G~d~i~l~D 162 (263)
T cd07943 98 GVDVVRVAT----HCTE----ADVSEQHIGAARKLGM-DVVG--FL--MMSHM--ASPEELAEQAKLMESYGADCVYVTD 162 (263)
T ss_pred CCCEEEEEe----chhh----HHHHHHHHHHHHHCCC-eEEE--EE--EeccC--CCHHHHHHHHHHHHHcCCCEEEEcC
Confidence 888888631 1111 1124556666677664 2221 11 11111 2334555555665557899887733
Q ss_pred CCCCC--CCCH-HHHHHHHhcCCCCEEEecCC
Q psy9039 195 NATGD--PADV-SQLMSVKNAVDLPILIGSGV 223 (251)
Q Consensus 195 ~~~g~--~~~~-~~l~~vr~~~~~PV~vG~GI 223 (251)
+ .|. +... ++++++|+..+. +-+|+=.
T Consensus 163 T-~G~~~P~~v~~lv~~l~~~~~~-~~l~~H~ 192 (263)
T cd07943 163 S-AGAMLPDDVRERVRALREALDP-TPVGFHG 192 (263)
T ss_pred C-CCCcCHHHHHHHHHHHHHhCCC-ceEEEEe
Confidence 2 222 2233 567788887764 3455544
|
4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate |
| >cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases | Back alignment and domain information |
|---|
Probab=83.51 E-value=5 Score=36.16 Aligned_cols=65 Identities=14% Similarity=0.240 Sum_probs=39.1
Q ss_pred HHHHHHhhhccccEEEecCCCCCCCC--C----HHHHHHHHhcC--CCCEEEecCCC-hHhHH---Hhhc--CCEEEEec
Q psy9039 176 TETAKAASFFLSDGLIITGNATGDPA--D----VSQLMSVKNAV--DLPILIGSGVT-SDNVE---HYMT--ADALIIGS 241 (251)
Q Consensus 176 ~~~a~~a~~~~~D~v~VTG~~~g~~~--~----~~~l~~vr~~~--~~PV~vG~GI~-~~~v~---~~~~--ADGvIVGS 241 (251)
++..+.....|+|++.+.|+. |+.. + .+.++.+.+.+ ++||++|-|-+ .+.++ .+.+ ||++.+-.
T Consensus 24 ~~l~~~l~~~Gv~gi~v~Gst-GE~~~Ls~eEr~~l~~~~~~~~~~~~pvi~gv~~~t~~~i~~a~~a~~~Gad~v~~~p 102 (289)
T cd00951 24 RAHVEWLLSYGAAALFAAGGT-GEFFSLTPDEYAQVVRAAVEETAGRVPVLAGAGYGTATAIAYAQAAEKAGADGILLLP 102 (289)
T ss_pred HHHHHHHHHcCCCEEEECcCC-cCcccCCHHHHHHHHHHHHHHhCCCCCEEEecCCCHHHHHHHHHHHHHhCCCEEEECC
Confidence 333333334699999998874 4322 1 23355555554 69999999874 33333 2222 89988754
|
The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate. |
| >COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=83.32 E-value=4.6 Score=36.78 Aligned_cols=66 Identities=21% Similarity=0.367 Sum_probs=41.4
Q ss_pred HHHHHHHhhhccccEEEecCCCCCCCCC------HHHHHHHHhcC--CCCEEEecCC-ChHhHHHh----hc--CCEEEE
Q psy9039 175 ITETAKAASFFLSDGLIITGNATGDPAD------VSQLMSVKNAV--DLPILIGSGV-TSDNVEHY----MT--ADALII 239 (251)
Q Consensus 175 i~~~a~~a~~~~~D~v~VTG~~~g~~~~------~~~l~~vr~~~--~~PV~vG~GI-~~~~v~~~----~~--ADGvIV 239 (251)
+.++.+.....|+|++++-|+. |+.+. .+.++.+++.+ .+||++|-|- +.++..++ .+ +||+.+
T Consensus 27 ~~~lv~~li~~Gv~gi~~~Gtt-GE~~~Ls~eEr~~v~~~~v~~~~grvpviaG~g~~~t~eai~lak~a~~~Gad~il~ 105 (299)
T COG0329 27 LRRLVEFLIAAGVDGLVVLGTT-GESPTLTLEERKEVLEAVVEAVGGRVPVIAGVGSNSTAEAIELAKHAEKLGADGILV 105 (299)
T ss_pred HHHHHHHHHHcCCCEEEECCCC-ccchhcCHHHHHHHHHHHHHHHCCCCcEEEecCCCcHHHHHHHHHHHHhcCCCEEEE
Confidence 3344444444699999998874 44322 23456677766 5999999999 44433322 23 999887
Q ss_pred ec
Q psy9039 240 GS 241 (251)
Q Consensus 240 GS 241 (251)
-+
T Consensus 106 v~ 107 (299)
T COG0329 106 VP 107 (299)
T ss_pred eC
Confidence 54
|
|
| >COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only] | Back alignment and domain information |
|---|
Probab=83.28 E-value=2.4 Score=37.42 Aligned_cols=67 Identities=24% Similarity=0.335 Sum_probs=48.3
Q ss_pred cHHHHHHHhhhccccEEEecCCCCCCCC-C-HHHHHHHHhcCCCCEEEecCCChHhHHHhhc-CCEEEEeceEee
Q psy9039 174 DITETAKAASFFLSDGLIITGNATGDPA-D-VSQLMSVKNAVDLPILIGSGVTSDNVEHYMT-ADALIIGSHFKQ 245 (251)
Q Consensus 174 ~i~~~a~~a~~~~~D~v~VTG~~~g~~~-~-~~~l~~vr~~~~~PV~vG~GI~~~~v~~~~~-ADGvIVGS~~~~ 245 (251)
...++++.+...|.|++.|-|+. |... . .+.++++|+.+++||++= |.+...+.. ||++.+=|-+--
T Consensus 29 ~~~ei~~~~~~~GTDaImIGGS~-gvt~~~~~~~v~~ik~~~~lPvilf----P~~~~~is~~aDavff~svLNS 98 (240)
T COG1646 29 EADEIAEAAAEAGTDAIMIGGSD-GVTEENVDNVVEAIKERTDLPVILF----PGSPSGISPYADAVFFPSVLNS 98 (240)
T ss_pred ccHHHHHHHHHcCCCEEEECCcc-cccHHHHHHHHHHHHhhcCCCEEEe----cCChhccCccCCeEEEEEEecC
Confidence 34667777777899999998874 4433 3 367889999999999862 334444445 999999887654
|
|
| >cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain | Back alignment and domain information |
|---|
Probab=83.27 E-value=3 Score=37.48 Aligned_cols=77 Identities=16% Similarity=0.111 Sum_probs=45.8
Q ss_pred CCCCcCCCCccEEEEeecCCCCcccc------------CCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHHHH
Q psy9039 42 LPPSVPVGVQHGVIVENMHDVPYVLE------------AESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALA 109 (251)
Q Consensus 42 a~~l~~~Gv~D~i~ieN~~~~Pf~~p------------~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ 109 (251)
++.++++|+ |+|.+.|-..-+..+. .-.||.+.....+.++++++.++ +|+..+.=..++ ....
T Consensus 172 a~~~~~~G~-d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~~~~~~~i~~i~~~~~--ipii~~GGI~~~-~da~ 247 (296)
T cd04740 172 ARAAEEAGA-DGLTLINTLKGMAIDIETRKPILGNVTGGLSGPAIKPIALRMVYQVYKAVE--IPIIGVGGIASG-EDAL 247 (296)
T ss_pred HHHHHHcCC-CEEEEECCCcccccccccCceeecCCcceecCcccchHHHHHHHHHHHhcC--CCEEEECCCCCH-HHHH
Confidence 355788999 9999887542111010 01233333334567788888887 797777655442 3333
Q ss_pred HHHHcCccceecc
Q psy9039 110 TAQAAGLDFIRAE 122 (251)
Q Consensus 110 ia~a~g~~Fir~~ 122 (251)
-+...|++++..+
T Consensus 248 ~~l~~GAd~V~ig 260 (296)
T cd04740 248 EFLMAGASAVQVG 260 (296)
T ss_pred HHHHcCCCEEEEc
Confidence 3345788888863
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. |
| >PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=83.23 E-value=4.1 Score=36.93 Aligned_cols=62 Identities=11% Similarity=0.104 Sum_probs=41.9
Q ss_pred HHHHHHhhhccccEEEecCCCCCCCCCHHHHHHHHhcC--CCCEEEecCCChHhHHHhhc--CCEEEEeceE
Q psy9039 176 TETAKAASFFLSDGLIITGNATGDPADVSQLMSVKNAV--DLPILIGSGVTSDNVEHYMT--ADALIIGSHF 243 (251)
Q Consensus 176 ~~~a~~a~~~~~D~v~VTG~~~g~~~~~~~l~~vr~~~--~~PV~vG~GI~~~~v~~~~~--ADGvIVGS~~ 243 (251)
.+.+..+...|+|.+-.-.. +.+.+++..+.. ...+.+.||||.+|++++.. .|.+.+|+-.
T Consensus 203 lee~~ea~~~gaDiImLDn~------s~e~l~~av~~~~~~~~leaSGgI~~~ni~~yA~tGVD~Is~galt 268 (281)
T PRK06543 203 LDQIEPVLAAGVDTIMLDNF------SLDDLREGVELVDGRAIVEASGNVNLNTVGAIASTGVDVISVGALT 268 (281)
T ss_pred HHHHHHHHhcCCCEEEECCC------CHHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHhcCCCEEEeCccc
Confidence 33445555678999766322 233344332221 35799999999999999996 9999999743
|
|
| >PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=83.17 E-value=4.2 Score=37.12 Aligned_cols=62 Identities=13% Similarity=0.190 Sum_probs=42.3
Q ss_pred HHHHHHhhhccccEEEecCCCCCCCCCHHHHHHHHhcC--CCCEEEecCCChHhHHHhhc--CCEEEEeceE
Q psy9039 176 TETAKAASFFLSDGLIITGNATGDPADVSQLMSVKNAV--DLPILIGSGVTSDNVEHYMT--ADALIIGSHF 243 (251)
Q Consensus 176 ~~~a~~a~~~~~D~v~VTG~~~g~~~~~~~l~~vr~~~--~~PV~vG~GI~~~~v~~~~~--ADGvIVGS~~ 243 (251)
.+.+..|...|+|.+-.-.. +.+.+++..+.. .+.+-+.||||.+|++++.. .|.+.+|+-.
T Consensus 215 leea~eA~~aGaDiImLDnm------spe~l~~av~~~~~~~~lEaSGGIt~~ni~~yA~tGVD~IS~galt 280 (294)
T PRK06978 215 LAQLETALAHGAQSVLLDNF------TLDMMREAVRVTAGRAVLEVSGGVNFDTVRAFAETGVDRISIGALT 280 (294)
T ss_pred HHHHHHHHHcCCCEEEECCC------CHHHHHHHHHhhcCCeEEEEECCCCHHHHHHHHhcCCCEEEeCccc
Confidence 33455665678999866322 233333322222 46789999999999999997 9999999743
|
|
| >COG4126 Hydantoin racemase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=82.93 E-value=11 Score=33.00 Aligned_cols=58 Identities=19% Similarity=0.229 Sum_probs=36.2
Q ss_pred HHHhhCCCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHHHHHHHHcCc
Q psy9039 37 EIRKVLPPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQAAGL 116 (251)
Q Consensus 37 ~a~~~a~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g~ 116 (251)
-.++++..-++-|+ |+++|.= |+|| .+..+|+... +| +.... .+++-.|...|.
T Consensus 57 ~~l~ei~~~~~~Gv-daiiIaC-----f~DP-------------gl~~~Re~~~--~P--viGi~---eAsv~~A~~vgr 110 (230)
T COG4126 57 GLLREIADGEEQGV-DAIIIAC-----FSDP-------------GLAAARERAA--IP--VIGIC---EASVLAALFVGR 110 (230)
T ss_pred HHHHHhhcccccCC-cEEEEEe-----cCCh-------------HHHHHHHHhC--CC--ceehh---HHHHHHHHHhcc
Confidence 34566677778899 9999844 5555 1345666666 67 22221 556677766777
Q ss_pred ccee
Q psy9039 117 DFIR 120 (251)
Q Consensus 117 ~Fir 120 (251)
+|--
T Consensus 111 rfsV 114 (230)
T COG4126 111 RFSV 114 (230)
T ss_pred eEEE
Confidence 7733
|
|
| >PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: |
Back alignment and domain information |
|---|
Probab=82.79 E-value=3.8 Score=35.09 Aligned_cols=131 Identities=13% Similarity=0.114 Sum_probs=66.0
Q ss_pred CCCCCCc-chHHHHHHHHHhhCCCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEe
Q psy9039 22 ESGPEIT-ANMTRLCAEIRKVLPPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQIL 100 (251)
Q Consensus 22 pG~P~~~-~~~~~i~~~a~~~a~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~ 100 (251)
|+++-|= -+++++ +.|.+.|+ |.|-+ |--... -| ..+..+++++|+... .+|-=
T Consensus 44 ~~~~V~ITPT~~ev--------~~l~~aGa-dIIAl----DaT~R~----Rp---~~l~~li~~i~~~~~-----l~MAD 98 (192)
T PF04131_consen 44 PDSDVYITPTLKEV--------DALAEAGA-DIIAL----DATDRP----RP---ETLEELIREIKEKYQ-----LVMAD 98 (192)
T ss_dssp TTSS--BS-SHHHH--------HHHHHCT--SEEEE----E-SSSS-----S---S-HHHHHHHHHHCTS-----EEEEE
T ss_pred CCCCeEECCCHHHH--------HHHHHcCC-CEEEE----ecCCCC----CC---cCHHHHHHHHHHhCc-----EEeee
Confidence 3444443 389999 88999999 99975 443322 23 448889999998641 24432
Q ss_pred eCChHHHHHHHHHcCccceecccccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHhhccCCCCCCcccHHHHHH
Q psy9039 101 SGCNKAALATAQAAGLDFIRAESFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSSHAITADVDITETAK 180 (251)
Q Consensus 101 ~N~~~~~~~ia~a~g~~Fir~~~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~k~~~~~~~~~~~i~~~a~ 180 (251)
... .+.--.|...|.+|+.. .++|..-.-.+ -.||.+.+.+.++. .++++++ | .-...+.++
T Consensus 99 ist-~ee~~~A~~~G~D~I~T-TLsGYT~~t~~-~~pD~~lv~~l~~~----~~pvIaE-----G------ri~tpe~a~ 160 (192)
T PF04131_consen 99 IST-LEEAINAAELGFDIIGT-TLSGYTPYTKG-DGPDFELVRELVQA----DVPVIAE-----G------RIHTPEQAA 160 (192)
T ss_dssp -SS-HHHHHHHHHTT-SEEE--TTTTSSTTSTT-SSHHHHHHHHHHHT----TSEEEEE-----S------S--SHHHHH
T ss_pred cCC-HHHHHHHHHcCCCEEEc-ccccCCCCCCC-CCCCHHHHHHHHhC----CCcEeec-----C------CCCCHHHHH
Confidence 222 34444456688999885 34453222333 44554444443332 3344431 1 112234455
Q ss_pred HhhhccccEEEecCC
Q psy9039 181 AASFFLSDGLIITGN 195 (251)
Q Consensus 181 ~a~~~~~D~v~VTG~ 195 (251)
.+-..|+++++|-+.
T Consensus 161 ~al~~GA~aVVVGsA 175 (192)
T PF04131_consen 161 KALELGAHAVVVGSA 175 (192)
T ss_dssp HHHHTT-SEEEE-HH
T ss_pred HHHhcCCeEEEECcc
Confidence 555578888877443
|
; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B. |
| >TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase | Back alignment and domain information |
|---|
Probab=82.76 E-value=12 Score=34.83 Aligned_cols=155 Identities=16% Similarity=0.150 Sum_probs=89.5
Q ss_pred HHHHHhhCCCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHHHHHHHHc
Q psy9039 35 CAEIRKVLPPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQAA 114 (251)
Q Consensus 35 ~~~a~~~a~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~ 114 (251)
++..+++++.|+++|+ |.|-+ -+ .+ .. .+..++++++.++ +|+...+.+|. ..++. |.+.
T Consensus 33 v~atv~QI~~L~~aGc-eiVRv----av--p~-----~~----~A~al~~I~~~~~--iPlVADIHFd~-~lAl~-a~~~ 92 (346)
T TIGR00612 33 IDSTVAQIRALEEAGC-DIVRV----TV--PD-----RE----SAAAFEAIKEGTN--VPLVADIHFDY-RLAAL-AMAK 92 (346)
T ss_pred HHHHHHHHHHHHHcCC-CEEEE----cC--CC-----HH----HHHhHHHHHhCCC--CCEEEeeCCCc-HHHHH-HHHh
Confidence 3455555599999999 99964 22 22 11 3456778888888 89999999975 33322 3456
Q ss_pred CccceecccccccccCCCceeecCcchhHHHHHhcCCCcchh-------hhhhHhhccCCCCCCcccHHHHH-HHhh---
Q psy9039 115 GLDFIRAESFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLV-------FTDIKKKHSSHAITADVDITETA-KAAS--- 183 (251)
Q Consensus 115 g~~Fir~~~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i-------~a~v~~k~~~~~~~~~~~i~~~a-~~a~--- 183 (251)
|++=+|.|. | ..+. .....++.+.+++.+. .|.+ =.++..|+|.+ ++ +.+.+.| +..+
T Consensus 93 g~dkiRINP--G-Nig~----~e~v~~vv~~ak~~~i-pIRIGVN~GSL~~~~~~kyg~~--t~-eamveSAl~~v~~le 161 (346)
T TIGR00612 93 GVAKVRINP--G-NIGF----RERVRDVVEKARDHGK-AMRIGVNHGSLERRLLEKYGDA--TA-EAMVQSALEEAAILE 161 (346)
T ss_pred ccCeEEECC--C-CCCC----HHHHHHHHHHHHHCCC-CEEEecCCCCCcHHHHHHcCCC--CH-HHHHHHHHHHHHHHH
Confidence 788899761 1 1111 1125556666666664 2322 12556676644 22 2233333 2222
Q ss_pred hccccEEEecCCCCCCCCCHHHHHHHHhcCCCCEEEe
Q psy9039 184 FFLSDGLIITGNATGDPADVSQLMSVKNAVDLPILIG 220 (251)
Q Consensus 184 ~~~~D~v~VTG~~~g~~~~~~~l~~vr~~~~~PV~vG 220 (251)
..+=+=+++|=..+......+..+.+.+.++.|+=+|
T Consensus 162 ~~~F~diviS~KsSdv~~~i~ayr~la~~~dyPLHlG 198 (346)
T TIGR00612 162 KLGFRNVVLSMKASDVAETVAAYRLLAERSDYPLHLG 198 (346)
T ss_pred HCCCCcEEEEEEcCCHHHHHHHHHHHHhhCCCCceec
Confidence 2344455666555544444566667777789998775
|
Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins. |
| >PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=82.45 E-value=31 Score=31.34 Aligned_cols=61 Identities=21% Similarity=0.425 Sum_probs=42.1
Q ss_pred hhccccEEEec-CCCCCC---CC--CHHHHHHHHhcCCCCEEE--ecCCChHhHHHhhc--CCEEEEeceE
Q psy9039 183 SFFLSDGLIIT-GNATGD---PA--DVSQLMSVKNAVDLPILI--GSGVTSDNVEHYMT--ADALIIGSHF 243 (251)
Q Consensus 183 ~~~~~D~v~VT-G~~~g~---~~--~~~~l~~vr~~~~~PV~v--G~GI~~~~v~~~~~--ADGvIVGS~~ 243 (251)
+.-|+|++-|+ |+..|. .+ +.++|+++++.+++|+++ |+|+..++++++.+ .-=+=++|.+
T Consensus 165 ~~TgvD~LAvaiGt~HG~y~~~p~Ld~~~L~~I~~~~~iPLVlHGgSG~~~e~~~kai~~Gi~KiNi~T~l 235 (284)
T PRK12737 165 ERTGIDSLAVAIGTAHGLYKGEPKLDFERLAEIREKVSIPLVLHGASGVPDEDVKKAISLGICKVNVATEL 235 (284)
T ss_pred HHhCCCEEeeccCccccccCCCCcCCHHHHHHHHHHhCCCEEEeCCCCCCHHHHHHHHHCCCeEEEeCcHH
Confidence 34589999764 544343 23 468899999999999988 55566788988774 4444455544
|
|
| >PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed | Back alignment and domain information |
|---|
Probab=82.31 E-value=2.1 Score=37.68 Aligned_cols=56 Identities=27% Similarity=0.428 Sum_probs=41.4
Q ss_pred hhccccEEEecCCCCCCCC-CH-HHHHHHHhcCCCCEEEecCCChHhHHHhhc-CCEEEEeceEe
Q psy9039 183 SFFLSDGLIITGNATGDPA-DV-SQLMSVKNAVDLPILIGSGVTSDNVEHYMT-ADALIIGSHFK 244 (251)
Q Consensus 183 ~~~~~D~v~VTG~~~g~~~-~~-~~l~~vr~~~~~PV~vG~GI~~~~v~~~~~-ADGvIVGS~~~ 244 (251)
...|.|++.|-|+. |... .+ +.++++|+ +++||++ | |.+...+.. ||++.+=|-+-
T Consensus 29 ~~~gtdai~vGGS~-~vt~~~~~~~v~~ik~-~~lPvil-f---p~~~~~i~~~aDa~l~~svlN 87 (232)
T PRK04169 29 CESGTDAIIVGGSD-GVTEENVDELVKAIKE-YDLPVIL-F---PGNIEGISPGADAYLFPSVLN 87 (232)
T ss_pred HhcCCCEEEEcCCC-ccchHHHHHHHHHHhc-CCCCEEE-e---CCCccccCcCCCEEEEEEEec
Confidence 34699999998885 3333 33 56889999 8999998 5 556666666 99999877653
|
|
| >PRK05437 isopentenyl pyrophosphate isomerase; Provisional | Back alignment and domain information |
|---|
Probab=81.92 E-value=2.2 Score=39.83 Aligned_cols=67 Identities=16% Similarity=0.374 Sum_probs=44.8
Q ss_pred HHHHHHHhhhccccEEEecC-C-----CCCCCCCH----HHHHHHHhcCCCCEEE---ecCCChHhHHHhhc--CCEEEE
Q psy9039 175 ITETAKAASFFLSDGLIITG-N-----ATGDPADV----SQLMSVKNAVDLPILI---GSGVTSDNVEHYMT--ADALII 239 (251)
Q Consensus 175 i~~~a~~a~~~~~D~v~VTG-~-----~~g~~~~~----~~l~~vr~~~~~PV~v---G~GI~~~~v~~~~~--ADGvIV 239 (251)
.+++.+..+...+|++-+-= . ..+...+. +.++.+++.+++||++ |+|.+.+.+..+.+ +|++.|
T Consensus 137 ~~~~~~~~~~~~adal~l~l~~~qe~~~p~g~~~f~~~le~i~~i~~~~~vPVivK~~g~g~s~~~a~~l~~~Gvd~I~V 216 (352)
T PRK05437 137 VEEAQRAVEMIEADALQIHLNPLQELVQPEGDRDFRGWLDNIAEIVSALPVPVIVKEVGFGISKETAKRLADAGVKAIDV 216 (352)
T ss_pred HHHHHHHHHhcCCCcEEEeCccchhhcCCCCcccHHHHHHHHHHHHHhhCCCEEEEeCCCCCcHHHHHHHHHcCCCEEEE
Confidence 44444444555677775421 1 11112233 5688888888999997 99999888888875 999999
Q ss_pred ec
Q psy9039 240 GS 241 (251)
Q Consensus 240 GS 241 (251)
+.
T Consensus 217 sg 218 (352)
T PRK05437 217 AG 218 (352)
T ss_pred CC
Confidence 55
|
|
| >cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea | Back alignment and domain information |
|---|
Probab=81.85 E-value=18 Score=31.19 Aligned_cols=68 Identities=18% Similarity=0.197 Sum_probs=37.0
Q ss_pred CCCcCCCCccEEEEe-ecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEee--------CC--hHHH-HHH
Q psy9039 43 PPSVPVGVQHGVIVE-NMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILS--------GC--NKAA-LAT 110 (251)
Q Consensus 43 ~~l~~~Gv~D~i~ie-N~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~--------N~--~~~~-~~i 110 (251)
+...+.|+ |++.++ |+.+.+ .....+.+.++.+..+ ... +|+.++.++ .. .+.. ...
T Consensus 83 ~~a~~~Ga-~~v~~~~~~~~~~-------~~~~~~~i~~v~~~~~-~~g--~~~iie~~~~g~~~~~~~~~~~i~~~~~~ 151 (235)
T cd00958 83 EDAVRLGA-DAVGVTVYVGSEE-------EREMLEELARVAAEAH-KYG--LPLIAWMYPRGPAVKNEKDPDLIAYAARI 151 (235)
T ss_pred HHHHHCCC-CEEEEEEecCCch-------HHHHHHHHHHHHHHHH-HcC--CCEEEEEeccCCcccCccCHHHHHHHHHH
Confidence 45668899 988654 433221 1122223333333333 345 799998876 11 1222 444
Q ss_pred HHHcCccceec
Q psy9039 111 AQAAGLDFIRA 121 (251)
Q Consensus 111 a~a~g~~Fir~ 121 (251)
|...|++|+..
T Consensus 152 a~~~GaD~Ik~ 162 (235)
T cd00958 152 GAELGADIVKT 162 (235)
T ss_pred HHHHCCCEEEe
Confidence 66688999886
|
Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies. |
| >TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase | Back alignment and domain information |
|---|
Probab=81.80 E-value=3.1 Score=40.49 Aligned_cols=68 Identities=15% Similarity=0.082 Sum_probs=42.8
Q ss_pred cHHHHHHHhhhccccEEEecCCCCCCCCCHHHHHHHHhcC-CCCEEEecCC-C--hHhHHHhhc-CCEEEEec
Q psy9039 174 DITETAKAASFFLSDGLIITGNATGDPADVSQLMSVKNAV-DLPILIGSGV-T--SDNVEHYMT-ADALIIGS 241 (251)
Q Consensus 174 ~i~~~a~~a~~~~~D~v~VTG~~~g~~~~~~~l~~vr~~~-~~PV~vG~GI-~--~~~v~~~~~-ADGvIVGS 241 (251)
+.+++.+.......|.+++|..........+.++.+|+.. ++||++||.- | ++++-+-.. +|.++.|-
T Consensus 51 ~~~~~~~~l~~~~pdvVgis~~t~~~~~a~~~~~~~k~~~P~~~iV~GG~h~t~~~~~~l~~~p~vD~Vv~GE 123 (497)
T TIGR02026 51 TDEKLVERLRAHCPDLVLITAITPAIYIACETLKFARERLPNAIIVLGGIHPTFMFHQVLTEAPWIDFIVRGE 123 (497)
T ss_pred CHHHHHHHHHhcCcCEEEEecCcccHHHHHHHHHHHHHHCCCCEEEEcCCCcCcCHHHHHhcCCCccEEEeCC
Confidence 3444444444457999999976432222235566778764 7899988876 4 555543334 89998883
|
This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase. |
| >PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=81.65 E-value=3.8 Score=37.96 Aligned_cols=53 Identities=21% Similarity=0.308 Sum_probs=39.7
Q ss_pred cccEEEecCCCCCCCC-CHHHHHHHHhcCC-CCEEEecCC-ChHhHHHhhc--CCEEEEe
Q psy9039 186 LSDGLIITGNATGDPA-DVSQLMSVKNAVD-LPILIGSGV-TSDNVEHYMT--ADALIIG 240 (251)
Q Consensus 186 ~~D~v~VTG~~~g~~~-~~~~l~~vr~~~~-~PV~vG~GI-~~~~v~~~~~--ADGvIVG 240 (251)
++|++.+--++ +... -.+.++++|+..+ +||++| -| |.+.+..+.+ +|++.||
T Consensus 111 ~~d~i~iD~a~-gh~~~~~e~I~~ir~~~p~~~vi~g-~V~t~e~a~~l~~aGad~i~vg 168 (326)
T PRK05458 111 TPEYITIDIAH-GHSDSVINMIQHIKKHLPETFVIAG-NVGTPEAVRELENAGADATKVG 168 (326)
T ss_pred CCCEEEEECCC-CchHHHHHHHHHHHhhCCCCeEEEE-ecCCHHHHHHHHHcCcCEEEEC
Confidence 46999996665 3333 3477999999885 776665 35 8899988886 9999888
|
|
| >cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=81.62 E-value=18 Score=32.19 Aligned_cols=146 Identities=17% Similarity=0.207 Sum_probs=70.0
Q ss_pred CCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHHHHHHHHcCccceecc
Q psy9039 43 PPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQAAGLDFIRAE 122 (251)
Q Consensus 43 ~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g~~Fir~~ 122 (251)
+.|.+.|+ |-|++ |.|-. .|.- ...++.+.+.... ..+ .. ....+...+..|...|.+.++..
T Consensus 29 ~~L~~~Gv-~~IEv----G~P~~-----~~~~----~~~~~~l~~~~~~-~~v-~~-~~r~~~~di~~a~~~g~~~i~i~ 91 (262)
T cd07948 29 KALDAFGV-DYIEL----TSPAA-----SPQS----RADCEAIAKLGLK-AKI-LT-HIRCHMDDARIAVETGVDGVDLV 91 (262)
T ss_pred HHHHHcCC-CEEEE----ECCCC-----CHHH----HHHHHHHHhCCCC-CcE-EE-EecCCHHHHHHHHHcCcCEEEEE
Confidence 66899999 99986 55543 3333 3333334332221 122 22 22333556777777888887752
Q ss_pred cccccccCC------Cc----eeecCcchhHHHHHhcCCCcchhhhhhHhhccCCCCCCcccHHHHHHHhhhccccEEEe
Q psy9039 123 SFVFGHMAD------EG----LMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSSHAITADVDITETAKAASFFLSDGLII 192 (251)
Q Consensus 123 ~~~~~~~~~------~G----li~~da~e~~~~r~~l~~~~i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~~~~~D~v~V 192 (251)
. .+++ .+ -......+..++.+..|. .+.+ .+..-.+ ++...+.+.++.+...|+|.+++
T Consensus 92 ~----~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~-~v~~--~~eda~r----~~~~~l~~~~~~~~~~g~~~i~l 160 (262)
T cd07948 92 F----GTSPFLREASHGKSITEIIESAVEVIEFVKSKGI-EVRF--SSEDSFR----SDLVDLLRVYRAVDKLGVNRVGI 160 (262)
T ss_pred E----ecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCC-eEEE--EEEeeCC----CCHHHHHHHHHHHHHcCCCEEEE
Confidence 1 1110 00 001113333445555443 1211 1110111 22344555555555568888776
Q ss_pred cCCCCCC--CCCH-HHHHHHHhcCCCCE
Q psy9039 193 TGNATGD--PADV-SQLMSVKNAVDLPI 217 (251)
Q Consensus 193 TG~~~g~--~~~~-~~l~~vr~~~~~PV 217 (251)
-=+- |. +... +++..+|+..++|+
T Consensus 161 ~Dt~-G~~~P~~v~~~~~~~~~~~~~~i 187 (262)
T cd07948 161 ADTV-GIATPRQVYELVRTLRGVVSCDI 187 (262)
T ss_pred CCcC-CCCCHHHHHHHHHHHHHhcCCeE
Confidence 4332 22 2233 56778888777665
|
Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th |
| >cd02065 B12-binding_like B12 binding domain (B12-BD) | Back alignment and domain information |
|---|
Probab=81.40 E-value=3.1 Score=31.79 Aligned_cols=64 Identities=22% Similarity=0.327 Sum_probs=43.7
Q ss_pred ccHHHHHHHhhhccccEEEecCCCCCCCCCHHHHHHHHhcC--CCCEEEecCC-C--hHhHHHhhc-CCEEEEec
Q psy9039 173 VDITETAKAASFFLSDGLIITGNATGDPADVSQLMSVKNAV--DLPILIGSGV-T--SDNVEHYMT-ADALIIGS 241 (251)
Q Consensus 173 ~~i~~~a~~a~~~~~D~v~VTG~~~g~~~~~~~l~~vr~~~--~~PV~vG~GI-~--~~~v~~~~~-ADGvIVGS 241 (251)
.+..++.+.......|.+++|...+......+.+.++|+.. ++|+++||-. + ++. . .|-+++|-
T Consensus 37 ~~~~~~~~~i~~~~pdiV~iS~~~~~~~~~~~~~~~~~~~~p~~~~ivvGG~~~t~~~~~-----~~~d~~~~Ge 106 (125)
T cd02065 37 VPPEEIVEAAKEEDADVVGLSALSTTHMEAMKLVIEALKELGIDIPVVVGGAHPTADPEE-----PKVDAVVIGE 106 (125)
T ss_pred CCHHHHHHHHHHcCCCEEEEecchHhHHHHHHHHHHHHHhcCCCCeEEEeCCcCCccccc-----cccceeeeCC
Confidence 34455555545568999999987665444456666776655 6999999977 4 343 4 78888873
|
Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif. |
| >TIGR02321 Pphn_pyruv_hyd phosphonopyruvate hydrolase | Back alignment and domain information |
|---|
Probab=81.07 E-value=17 Score=33.01 Aligned_cols=64 Identities=13% Similarity=0.311 Sum_probs=39.2
Q ss_pred HHHHHHhh-h--ccccEEEecCCCCCCCCCHHHHHHHHhcCC--CCEEEecCC----ChHhHHHhhcCCEEEEeceE
Q psy9039 176 TETAKAAS-F--FLSDGLIITGNATGDPADVSQLMSVKNAVD--LPILIGSGV----TSDNVEHYMTADALIIGSHF 243 (251)
Q Consensus 176 ~~~a~~a~-~--~~~D~v~VTG~~~g~~~~~~~l~~vr~~~~--~PV~vG~GI----~~~~v~~~~~ADGvIVGS~~ 243 (251)
++..+.+. + .|+|++.|.|. ..+.+.++++.+.++ +|+++-.|- +.++..++-...-++.|+..
T Consensus 166 deAI~Ra~aY~eAGAD~ifv~~~----~~~~~ei~~~~~~~~~p~pv~~~~~~~p~~~~~~l~~lg~~~~v~~g~~~ 238 (290)
T TIGR02321 166 QEAVRRGQAYEEAGADAILIHSR----QKTPDEILAFVKSWPGKVPLVLVPTAYPQLTEADIAALSKVGIVIYGNHA 238 (290)
T ss_pred HHHHHHHHHHHHcCCCEEEecCC----CCCHHHHHHHHHhcCCCCCeEEecCCCCCCCHHHHHHhcCCcEEEEChHH
Confidence 44455554 3 59999999862 134677888777765 588653332 44556655324557777543
|
This family consists of phosphonopyruvate hydrolase, an enzyme closely related to phosphoenolpyruvate phosphomutase. It cleaves the direct C-P bond of phosphonopyruvate. The characterized example is from Variovorax sp. Pal2. |
| >COG1954 GlpP Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription] | Back alignment and domain information |
|---|
Probab=80.96 E-value=2.5 Score=35.57 Aligned_cols=96 Identities=14% Similarity=0.310 Sum_probs=59.1
Q ss_pred ccCCCceeecCcchhHHHHHhcCCC---cchhhhhhHhhccCCCCCCcccHHHHHHHhhhccccEEEecCCCCCCCCCHH
Q psy9039 128 HMADEGLMNAQAGPLLRYRKQIGAD---NVLVFTDIKKKHSSHAITADVDITETAKAASFFLSDGLIITGNATGDPADVS 204 (251)
Q Consensus 128 ~~~~~Gli~~da~e~~~~r~~l~~~---~i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~~~~~D~v~VTG~~~g~~~~~~ 204 (251)
...++|+|.....-+ ...++++.. .++++. ...++...+......+|++-|- .| --..
T Consensus 74 ~~~pdGIISTk~~~i-~~Akk~~~~aIqR~FilD-------------S~Al~~~~~~i~~~~pD~iEvL---PG--v~Pk 134 (181)
T COG1954 74 VIKPDGIISTKSNVI-KKAKKLGILAIQRLFILD-------------SIALEKGIKQIEKSEPDFIEVL---PG--VMPK 134 (181)
T ss_pred hccCCeeEEccHHHH-HHHHHcCCceeeeeeeec-------------HHHHHHHHHHHHHcCCCEEEEc---Cc--ccHH
Confidence 355778887764443 444455542 222221 1222333233333578887552 12 1247
Q ss_pred HHHHHHhcCCCCEEEecCC-ChHhHHHhhcCCEEEEece
Q psy9039 205 QLMSVKNAVDLPILIGSGV-TSDNVEHYMTADALIIGSH 242 (251)
Q Consensus 205 ~l~~vr~~~~~PV~vG~GI-~~~~v~~~~~ADGvIVGS~ 242 (251)
.++++.+.++.||++||=| |.|++.++++|=++.|.|+
T Consensus 135 vi~~i~~~t~~piIAGGLi~t~Eev~~Al~aGA~avSTs 173 (181)
T COG1954 135 VIKEITEKTHIPIIAGGLIETEEEVREALKAGAVAVSTS 173 (181)
T ss_pred HHHHHHHhcCCCEEeccccccHHHHHHHHHhCcEEEeec
Confidence 7889999999999999988 7899999998666666654
|
|
| >TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family | Back alignment and domain information |
|---|
Probab=80.92 E-value=35 Score=30.96 Aligned_cols=60 Identities=22% Similarity=0.418 Sum_probs=41.0
Q ss_pred hccccEEEec-CCCCCC---CC--CHHHHHHHHhcCCCCEEE--ecCCChHhHHHhhc--CCEEEEeceE
Q psy9039 184 FFLSDGLIIT-GNATGD---PA--DVSQLMSVKNAVDLPILI--GSGVTSDNVEHYMT--ADALIIGSHF 243 (251)
Q Consensus 184 ~~~~D~v~VT-G~~~g~---~~--~~~~l~~vr~~~~~PV~v--G~GI~~~~v~~~~~--ADGvIVGS~~ 243 (251)
.-|+|++-|+ |...|. .+ +.++|+++++.+++|+++ |+|++.+++++... .-=+=++|.|
T Consensus 164 ~TgvD~LAvaiGt~HG~yk~~p~Ldf~~L~~I~~~~~iPLVlHGgSG~~~e~~~~ai~~Gi~KiNi~T~l 233 (282)
T TIGR01858 164 ATGVDSLAVAIGTAHGLYKKTPKLDFDRLAEIREVVDVPLVLHGASDVPDEDVRRTIELGICKVNVATEL 233 (282)
T ss_pred HHCcCEEecccCccccCcCCCCccCHHHHHHHHHHhCCCeEEecCCCCCHHHHHHHHHcCCeEEEeCcHH
Confidence 3589999664 554443 22 468899999999999988 55566788888764 4444445544
|
This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4. |
| >PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional | Back alignment and domain information |
|---|
Probab=80.73 E-value=23 Score=32.05 Aligned_cols=159 Identities=11% Similarity=0.053 Sum_probs=0.0
Q ss_pred HHHHHhhCCCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHHHHHHHHc
Q psy9039 35 CAEIRKVLPPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQAA 114 (251)
Q Consensus 35 ~~~a~~~a~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~ 114 (251)
.+.-++=++.|.+.|+ |-|++-++.. |---|...+. ...++++++... ..+...+ .| ...+..|...
T Consensus 25 ~e~k~~ia~~L~~~Gv-~~IEvgsf~~-p~~~p~~~d~------~e~~~~l~~~~~--~~~~~l~-~~--~~~ie~A~~~ 91 (287)
T PRK05692 25 TADKIALIDRLSAAGL-SYIEVASFVS-PKWVPQMADA------AEVMAGIQRRPG--VTYAALT-PN--LKGLEAALAA 91 (287)
T ss_pred HHHHHHHHHHHHHcCC-CEEEeCCCcC-cccccccccH------HHHHHhhhccCC--CeEEEEe-cC--HHHHHHHHHc
Q ss_pred CccceecccccccccCCCceeecCcchhHHHHHhcCCCc----chhhhhhHhhccCCC--------------CCCcccHH
Q psy9039 115 GLDFIRAESFVFGHMADEGLMNAQAGPLLRYRKQIGADN----VLVFTDIKKKHSSHA--------------ITADVDIT 176 (251)
Q Consensus 115 g~~Fir~~~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~----i~i~a~v~~k~~~~~--------------~~~~~~i~ 176 (251)
|.+.++. ..+-.+...+..-....+. +.-.-...+++|..+ .++...+.
T Consensus 92 g~~~v~i-------------~~~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak~~g~~v~~~i~~~~~~~~~~~~~~~~~~ 158 (287)
T PRK05692 92 GADEVAV-------------FASASEAFSQKNINCSIAESLERFEPVAEAAKQAGVRVRGYVSCVLGCPYEGEVPPEAVA 158 (287)
T ss_pred CCCEEEE-------------EEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEEEEecCCCCCCCCHHHHH
Q ss_pred HHHHHhhhccccEEEecCCCCCCCCCH--HHHHHHHhcCC-CCEEE
Q psy9039 177 ETAKAASFFLSDGLIITGNATGDPADV--SQLMSVKNAVD-LPILI 219 (251)
Q Consensus 177 ~~a~~a~~~~~D~v~VTG~~~g~~~~~--~~l~~vr~~~~-~PV~v 219 (251)
+.++.+...|+|.+.+.=+---..|.. ++++++|+..+ +|+-+
T Consensus 159 ~~~~~~~~~G~d~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~i~~ 204 (287)
T PRK05692 159 DVAERLFALGCYEISLGDTIGVGTPGQVRAVLEAVLAEFPAERLAG 204 (287)
T ss_pred HHHHHHHHcCCcEEEeccccCccCHHHHHHHHHHHHHhCCCCeEEE
|
|
| >PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=80.58 E-value=2.1 Score=39.81 Aligned_cols=44 Identities=23% Similarity=0.384 Sum_probs=30.5
Q ss_pred HHHHHHHhcCCCCEEE-ecCCChHhHHH----hhc--C--CEEEEeceEeecC
Q psy9039 204 SQLMSVKNAVDLPILI-GSGVTSDNVEH----YMT--A--DALIIGSHFKQGG 247 (251)
Q Consensus 204 ~~l~~vr~~~~~PV~v-G~GI~~~~v~~----~~~--A--DGvIVGS~~~~~g 247 (251)
+.++++.+.+++|+++ |+|.+.+.+.+ .+. | .|+.+|-++-+++
T Consensus 231 ~~f~~~~~a~~~P~vvlsgG~~~~~f~~~l~~A~~aGa~f~Gvl~GRniwq~~ 283 (340)
T PRK12858 231 KLFREQSDATDLPFIFLSAGVSPELFRRTLEFACEAGADFSGVLCGRATWQDG 283 (340)
T ss_pred HHHHHHHhhCCCCEEEECCCCCHHHHHHHHHHHHHcCCCccchhhhHHHHhhh
Confidence 4567777778899888 88887655443 333 7 8999997665443
|
|
| >cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain | Back alignment and domain information |
|---|
Probab=80.49 E-value=4.5 Score=36.10 Aligned_cols=76 Identities=16% Similarity=0.147 Sum_probs=44.5
Q ss_pred CCCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCCh----HHHHHHHHHcCcc
Q psy9039 42 LPPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCN----KAALATAQAAGLD 117 (251)
Q Consensus 42 a~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~----~~~~~ia~a~g~~ 117 (251)
++.+.+.|+ |+|+| | ++-|.......--...+.+.++++++|+.++ +|+.+=+-.+.. ......+...|++
T Consensus 117 a~~~~~~G~-d~iel-N-~~cP~~~~~~~~~~~~~~~~eiv~~vr~~~~--~pv~vKl~~~~~~~~~~~~a~~l~~~Gad 191 (289)
T cd02810 117 ARKIERAGA-KALEL-N-LSCPNVGGGRQLGQDPEAVANLLKAVKAAVD--IPLLVKLSPYFDLEDIVELAKAAERAGAD 191 (289)
T ss_pred HHHHHHhCC-CEEEE-E-cCCCCCCCCcccccCHHHHHHHHHHHHHccC--CCEEEEeCCCCCHHHHHHHHHHHHHcCCC
Confidence 345567799 99987 3 3455543211101123456778899998876 788775433321 2223344557888
Q ss_pred ceecc
Q psy9039 118 FIRAE 122 (251)
Q Consensus 118 Fir~~ 122 (251)
|+...
T Consensus 192 ~i~~~ 196 (289)
T cd02810 192 GLTAI 196 (289)
T ss_pred EEEEE
Confidence 88863
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of |
| >PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=80.32 E-value=7.6 Score=35.25 Aligned_cols=57 Identities=16% Similarity=0.307 Sum_probs=35.7
Q ss_pred hccccEEEecCCCCCCCC--C----HHHHHHHHhcC--CCCEEEecCCCh-HhHH---Hhhc--CCEEEEec
Q psy9039 184 FFLSDGLIITGNATGDPA--D----VSQLMSVKNAV--DLPILIGSGVTS-DNVE---HYMT--ADALIIGS 241 (251)
Q Consensus 184 ~~~~D~v~VTG~~~g~~~--~----~~~l~~vr~~~--~~PV~vG~GI~~-~~v~---~~~~--ADGvIVGS 241 (251)
..|+|++++-|+. |+.. + .+.++.+++.+ ++||++|-|-+. +.++ .+.+ ||++.+-.
T Consensus 39 ~~Gv~Gi~~~Gst-GE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~~~t~~~i~~~~~a~~~Gadav~~~p 109 (303)
T PRK03620 39 PYGAAALFAAGGT-GEFFSLTPDEYSQVVRAAVETTAGRVPVIAGAGGGTAQAIEYAQAAERAGADGILLLP 109 (303)
T ss_pred HcCCCEEEECcCC-cCcccCCHHHHHHHHHHHHHHhCCCCcEEEecCCCHHHHHHHHHHHHHhCCCEEEECC
Confidence 3699999998874 4322 1 23355555554 599999998743 3333 2223 99998754
|
|
| >PF00682 HMGL-like: HMGL-like of this family is not conserved in other members | Back alignment and domain information |
|---|
Probab=80.23 E-value=4.3 Score=35.07 Aligned_cols=150 Identities=17% Similarity=0.222 Sum_probs=0.0
Q ss_pred HHHHHhhCCCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHHHHHHHHc
Q psy9039 35 CAEIRKVLPPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQAA 114 (251)
Q Consensus 35 ~~~a~~~a~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~ 114 (251)
.+..++=++.|.+.|+ |.|++ |+|+. ++.-...+.++.+.+.+ .. +......-..+....+..+...
T Consensus 13 ~~~k~~i~~~L~~~Gv-~~iEv----g~~~~-----~~~~~~~v~~~~~~~~~-~~--~~~~~~~~~~~i~~~~~~~~~~ 79 (237)
T PF00682_consen 13 TEEKLEIAKALDEAGV-DYIEV----GFPFA-----SEDDFEQVRRLREALPN-AR--LQALCRANEEDIERAVEAAKEA 79 (237)
T ss_dssp HHHHHHHHHHHHHHTT-SEEEE----EHCTS-----SHHHHHHHHHHHHHHHS-SE--EEEEEESCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCC-CEEEE----ccccc-----CHHHHHHhhhhhhhhcc-cc--cceeeeehHHHHHHHHHhhHhc
Q ss_pred CccceecccccccccCCCceeecCcc-------------------hhHHHHHhcCCCcchhhhhhHhhccCCCCCCcccH
Q psy9039 115 GLDFIRAESFVFGHMADEGLMNAQAG-------------------PLLRYRKQIGADNVLVFTDIKKKHSSHAITADVDI 175 (251)
Q Consensus 115 g~~Fir~~~~~~~~~~~~Gli~~da~-------------------e~~~~r~~l~~~~i~i~a~v~~k~~~~~~~~~~~i 175 (251)
|.++++. ..+-.+ +..++.+..+. .+ .+...+... ++...+
T Consensus 80 g~~~i~i-------------~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~-~v----~~~~~~~~~--~~~~~~ 139 (237)
T PF00682_consen 80 GIDIIRI-------------FISVSDLHIRKNLNKSREEALERIEEAVKYAKELGY-EV----AFGCEDASR--TDPEEL 139 (237)
T ss_dssp TSSEEEE-------------EEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTS-EE----EEEETTTGG--SSHHHH
T ss_pred cCCEEEe-------------cCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCC-ce----EeCcccccc--ccHHHH
Q ss_pred HHHHHHhhhccccEEEecCCCCCCCCCH--HHHHHHHhcCC-CCE
Q psy9039 176 TETAKAASFFLSDGLIITGNATGDPADV--SQLMSVKNAVD-LPI 217 (251)
Q Consensus 176 ~~~a~~a~~~~~D~v~VTG~~~g~~~~~--~~l~~vr~~~~-~PV 217 (251)
.+.++.+..+|+|.+.+--+--...|.. ++++.+|+..+ +|+
T Consensus 140 ~~~~~~~~~~g~~~i~l~Dt~G~~~P~~v~~lv~~~~~~~~~~~l 184 (237)
T PF00682_consen 140 LELAEALAEAGADIIYLADTVGIMTPEDVAELVRALREALPDIPL 184 (237)
T ss_dssp HHHHHHHHHHT-SEEEEEETTS-S-HHHHHHHHHHHHHHSTTSEE
T ss_pred HHHHHHHHHcCCeEEEeeCccCCcCHHHHHHHHHHHHHhccCCeE
|
are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A .... |
| >PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=80.20 E-value=5 Score=36.44 Aligned_cols=64 Identities=19% Similarity=0.372 Sum_probs=46.5
Q ss_pred hhhccccEEEec-CCCCCCC--C--CHHHHHHHHhcCCCCEEEec--CCChHhHHHhhc--CCEEEEeceEee
Q psy9039 182 ASFFLSDGLIIT-GNATGDP--A--DVSQLMSVKNAVDLPILIGS--GVTSDNVEHYMT--ADALIIGSHFKQ 245 (251)
Q Consensus 182 a~~~~~D~v~VT-G~~~g~~--~--~~~~l~~vr~~~~~PV~vG~--GI~~~~v~~~~~--ADGvIVGS~~~~ 245 (251)
.+.-|+|.+-|+ |...|.. + +.+.++++++.+++|+++=| |++.+++++..+ .-.+=|||.++.
T Consensus 162 v~~TgvD~LAvaiGt~HG~Y~~p~l~~~~l~~I~~~~~vPLVlHGgSG~~~e~~~~ai~~Gi~KiNi~Tel~~ 234 (283)
T PRK07998 162 VERTGCDMLAVSIGNVHGLEDIPRIDIPLLKRIAEVSPVPLVIHGGSGIPPEILRSFVNYKVAKVNIASDLRK 234 (283)
T ss_pred HHHhCcCeeehhccccccCCCCCCcCHHHHHHHHhhCCCCEEEeCCCCCCHHHHHHHHHcCCcEEEECHHHHH
Confidence 333589998664 4433332 3 46889999999999999855 456788998885 888888887653
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 251 | |||
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 4e-05 | |
| 3nav_A | 271 | Tryptophan synthase alpha chain; alpha subunit, st | 6e-04 |
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 43.7 bits (102), Expect = 4e-05
Identities = 36/233 (15%), Positives = 73/233 (31%), Gaps = 57/233 (24%)
Query: 31 MTRLCAEIRKVLPPSVPVGVQHGVIVENMHDVPYVLEAESGPEITA--NMTR--LCAEIR 86
M+ + E R+ PS+ + D Y + ++ A N++R ++R
Sbjct: 95 MSPIKTEQRQ---PSMMT-----RMYIEQRDRLY-----NDNQVFAKYNVSRLQPYLKLR 141
Query: 87 KVL---PPSVPVGVQILSGCNKAALATAQAAGLDFIRAESF-VF----GHM-ADEGLMN- 136
+ L P+ V + + G K +A F +F + + E ++
Sbjct: 142 QALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEM 201
Query: 137 -----AQAGPLLRYRKQIGADNVLVFTDIKK------KHSSHA----ITADVDITETAKA 181
Q P R ++ L I+ K + + +V + A
Sbjct: 202 LQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNA 261
Query: 182 ASFFLSDG----LIITGNATGDPADVSQLMSVKNAVDLPI-LIGSGVTSDNVE 229
F + L+ T V+ +S + + +T D V+
Sbjct: 262 --F---NLSCKILLTTRF-----KQVTDFLSAATTTHISLDHHSMTLTPDEVK 304
|
| >3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} Length = 271 | Back alignment and structure |
|---|
Score = 39.1 bits (92), Expect = 6e-04
Identities = 24/119 (20%), Positives = 41/119 (34%), Gaps = 26/119 (21%)
Query: 147 KQIGADNVLV----------FTDIKKKHSSHAI------TADVDITETAKAASFFL---- 186
++ G D+VL+ F +K I +D + A+ +
Sbjct: 122 QKAGVDSVLIADVPTNESQPFVAAAEKFGIQPIFIAPPTASDETLRAVAQLGKGYTYLLS 181
Query: 187 SDGLIITGNATGDPADVSQLMS-VKNAVDLPILIGSGV-TSDNVEHYMT--ADALIIGS 241
G +TG T V L+ ++ P L+G G+ V+ + A I GS
Sbjct: 182 RAG--VTGAETKANMPVHALLERLQQFDAPPALLGFGISEPAQVKQAIEAGAAGAISGS 238
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 251 | |||
| 3tha_A | 252 | Tryptophan synthase alpha chain; structural genomi | 100.0 | |
| 3nav_A | 271 | Tryptophan synthase alpha chain; alpha subunit, st | 100.0 | |
| 3vnd_A | 267 | TSA, tryptophan synthase alpha chain; psychrophili | 100.0 | |
| 1ujp_A | 271 | Tryptophan synthase alpha chain; riken structural | 100.0 | |
| 2ekc_A | 262 | AQ_1548, tryptophan synthase alpha chain; structur | 99.97 | |
| 1qop_A | 268 | Tryptophan synthase alpha chain; lyase, carbon-oxy | 99.96 | |
| 1rd5_A | 262 | Tryptophan synthase alpha chain, chloroplast; hydr | 99.91 | |
| 1geq_A | 248 | Tryptophan synthase alpha-subunit; hyperthermophIl | 99.84 | |
| 2f6u_A | 234 | GGGPS, (S)-3-O-geranylgeranylglyceryl phosphate sy | 99.77 | |
| 1viz_A | 240 | PCRB protein homolog; structural genomics, unknown | 99.76 | |
| 3w01_A | 235 | Heptaprenylglyceryl phosphate synthase; biosynthes | 99.59 | |
| 3vzx_A | 228 | Heptaprenylglyceryl phosphate synthase; biosynthes | 99.57 | |
| 1tqj_A | 230 | Ribulose-phosphate 3-epimerase; beta-alpha barrel | 99.44 | |
| 1rpx_A | 230 | Protein (ribulose-phosphate 3-epimerase); chloropl | 99.39 | |
| 1h1y_A | 228 | D-ribulose-5-phosphate 3-epimerase; oxidative pent | 99.37 | |
| 1h5y_A | 253 | HISF; histidine biosynthesis, TIM-barrel; 2.0A {Py | 99.34 | |
| 1ka9_F | 252 | Imidazole glycerol phosphtate synthase; riken stru | 99.3 | |
| 3f4w_A | 211 | Putative hexulose 6 phosphate synthase; humps, mal | 99.3 | |
| 3q58_A | 229 | N-acetylmannosamine-6-phosphate 2-epimerase; TIM b | 99.27 | |
| 3igs_A | 232 | N-acetylmannosamine-6-phosphate 2-epimerase 2; ene | 99.27 | |
| 1xm3_A | 264 | Thiazole biosynthesis protein THIG; structural gen | 99.26 | |
| 2tps_A | 227 | Protein (thiamin phosphate synthase); thiamin bios | 99.22 | |
| 1thf_D | 253 | HISF protein; thermophIle, TIM-barrel, histidine b | 99.21 | |
| 2w6r_A | 266 | Imidazole glycerol phosphate synthase subunit HISF | 99.21 | |
| 3qja_A | 272 | IGPS, indole-3-glycerol phosphate synthase; struct | 99.17 | |
| 2z6i_A | 332 | Trans-2-enoyl-ACP reductase II; fatty acid synthes | 99.15 | |
| 2gjl_A | 328 | Hypothetical protein PA1024; 2-nitropropane dioxyg | 99.15 | |
| 3tdn_A | 247 | FLR symmetric alpha-beta TIM barrel; symmetric sup | 99.12 | |
| 2fli_A | 220 | Ribulose-phosphate 3-epimerase; (beta/alpha)8-barr | 99.08 | |
| 3bw2_A | 369 | 2-nitropropane dioxygenase; TIM barrel, oxidoreduc | 99.04 | |
| 1qo2_A | 241 | Molecule: N-((5-phosphoribosyl)-formimino)-5-amino | 99.03 | |
| 3bo9_A | 326 | Putative nitroalkan dioxygenase; TM0800, structura | 99.03 | |
| 1vzw_A | 244 | Phosphoribosyl isomerase A; histidine biosynthesis | 98.98 | |
| 1xi3_A | 215 | Thiamine phosphate pyrophosphorylase; structural g | 98.95 | |
| 3vk5_A | 286 | MOEO5; TIM barrel, transferase; HET: FPQ; 1.39A {S | 98.94 | |
| 3jr2_A | 218 | Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulon | 98.93 | |
| 2yw3_A | 207 | 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deox | 98.93 | |
| 3ajx_A | 207 | 3-hexulose-6-phosphate synthase; HPS, OMPDC supraf | 98.91 | |
| 2v82_A | 212 | 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; l | 98.91 | |
| 2y88_A | 244 | Phosphoribosyl isomerase A; aromatic amino acid bi | 98.9 | |
| 1yxy_A | 234 | Putative N-acetylmannosamine-6-phosphate 2-epimer; | 98.89 | |
| 4e38_A | 232 | Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho | 98.87 | |
| 1wa3_A | 205 | 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, | 98.82 | |
| 3o63_A | 243 | Probable thiamine-phosphate pyrophosphorylase; thi | 98.82 | |
| 3tsm_A | 272 | IGPS, indole-3-glycerol phosphate synthase; struct | 98.81 | |
| 3zen_D | 3089 | Fatty acid synthase; transferase, mycolic acid bio | 98.76 | |
| 3khj_A | 361 | Inosine-5-monophosphate dehydrogenase; enzyme-inhi | 98.75 | |
| 1y0e_A | 223 | Putative N-acetylmannosamine-6-phosphate 2-epimer; | 98.75 | |
| 1vhc_A | 224 | Putative KHG/KDPG aldolase; structural genomics, u | 98.73 | |
| 2nv1_A | 305 | Pyridoxal biosynthesis lyase PDXS; (beta/alpha)8-b | 98.72 | |
| 1mxs_A | 225 | KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate a | 98.72 | |
| 1wbh_A | 214 | KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli} | 98.7 | |
| 1ep3_A | 311 | Dihydroorotate dehydrogenase B (PYRD subunit); het | 98.69 | |
| 4adt_A | 297 | Pyridoxine biosynthetic enzyme PDX1 homologue, PU; | 98.67 | |
| 3lab_A | 217 | Putative KDPG (2-keto-3-deoxy-6-phosphogluconate) | 98.66 | |
| 3ovp_A | 228 | Ribulose-phosphate 3-epimerase; iron binding, isom | 98.66 | |
| 2uva_G | 2060 | Fatty acid synthase beta subunits; fungal, dehydra | 98.66 | |
| 2zbt_A | 297 | Pyridoxal biosynthesis lyase PDXS; pyridoxine bios | 98.65 | |
| 2uv8_G | 2051 | Fatty acid synthase subunit beta (FAS1); fatty aci | 98.65 | |
| 3inp_A | 246 | D-ribulose-phosphate 3-epimerase; IDP02542, isomer | 98.62 | |
| 1yad_A | 221 | Regulatory protein TENI; TIM barrel, transcription | 98.6 | |
| 3ctl_A | 231 | D-allulose-6-phosphate 3-epimerase; D-glucitol 6-p | 98.6 | |
| 1vc4_A | 254 | Indole-3-glycerol phosphate synthase; lyase, trypt | 98.58 | |
| 1jvn_A | 555 | Glutamine, bifunctional histidine biosynthesis pro | 98.55 | |
| 1wv2_A | 265 | Thiazole moeity, thiazole biosynthesis protein THI | 98.55 | |
| 3ceu_A | 210 | Thiamine phosphate pyrophosphorylase; TIM barrel-l | 98.48 | |
| 4fo4_A | 366 | Inosine 5'-monophosphate dehydrogenase; structural | 98.47 | |
| 1jub_A | 311 | Dihydroorotate dehydrogenase A; homodimer, alpha-b | 98.43 | |
| 3gr7_A | 340 | NADPH dehydrogenase; flavin, FMN, beta-alpha-barre | 98.42 | |
| 3cu2_A | 237 | Ribulose-5-phosphate 3-epimerase; YP_718263.1, rib | 98.38 | |
| 1z41_A | 338 | YQJM, probable NADH-dependent flavin oxidoreductas | 98.37 | |
| 1tqx_A | 227 | D-ribulose-5-phosphate 3-epimerase, putative; stru | 98.36 | |
| 3o07_A | 291 | Pyridoxine biosynthesis protein SNZ1; (beta/alpha) | 98.36 | |
| 2e6f_A | 314 | Dihydroorotate dehydrogenase; chagas disease, pyri | 98.35 | |
| 3zwt_A | 367 | Dihydroorotate dehydrogenase (quinone), mitochond; | 98.34 | |
| 3hgj_A | 349 | Chromate reductase; TIM barrel, oxidoreductase; HE | 98.29 | |
| 3i65_A | 415 | Dihydroorotate dehydrogenase homolog, mitochondria | 98.29 | |
| 4gj1_A | 243 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) me | 98.27 | |
| 1nsj_A | 205 | PRAI, phosphoribosyl anthranilate isomerase; therm | 98.21 | |
| 1v5x_A | 203 | PRA isomerase, phosphoribosylanthranilate isomeras | 98.17 | |
| 2htm_A | 268 | Thiazole biosynthesis protein THIG; thiamin biosyn | 98.16 | |
| 2h6r_A | 219 | Triosephosphate isomerase; beta-alpha barrel; 2.30 | 98.14 | |
| 1tv5_A | 443 | Dhodehase, dihydroorotate dehydrogenase homolog, m | 98.13 | |
| 3kru_A | 343 | NADH:flavin oxidoreductase/NADH oxidase; homotetra | 98.07 | |
| 1f76_A | 336 | Dihydroorotate dehydrogenase; monomer, alpha-beta- | 98.07 | |
| 3l5l_A | 363 | Xenobiotic reductase A; TIM barrel, oxidoreductase | 98.04 | |
| 3nl6_A | 540 | Thiamine biosynthetic bifunctional enzyme; thiamin | 98.03 | |
| 3ffs_A | 400 | Inosine-5-monophosphate dehydrogenase; beta-alpha | 98.01 | |
| 3b0p_A | 350 | TRNA-dihydrouridine synthase; TIM barrel, oxidored | 98.0 | |
| 3l5a_A | 419 | NADH/flavin oxidoreductase/NADH oxidase; OLD yello | 98.0 | |
| 3tdn_A | 247 | FLR symmetric alpha-beta TIM barrel; symmetric sup | 98.0 | |
| 1vyr_A | 364 | Pentaerythritol tetranitrate reductase; oxidoreduc | 97.96 | |
| 1i4n_A | 251 | Indole-3-glycerol phosphate synthase; thermostable | 97.95 | |
| 2r14_A | 377 | Morphinone reductase; H-tunnelling, flavoprotein, | 97.93 | |
| 4ab4_A | 362 | Xenobiotic reductase B; oxidoreductase, OLD yellow | 97.93 | |
| 3gka_A | 361 | N-ethylmaleimide reductase; decode biostructures, | 97.92 | |
| 3sgz_A | 352 | Hydroxyacid oxidase 2; flavoprotein, homology, INH | 97.9 | |
| 4ef8_A | 354 | Dihydroorotate dehydrogenase; phenyl isothiocyanat | 97.88 | |
| 3iwp_A | 287 | Copper homeostasis protein CUTC homolog; conserved | 97.85 | |
| 1ps9_A | 671 | 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel | 97.84 | |
| 4a29_A | 258 | Engineered retro-aldol enzyme RA95.0; de novo prot | 97.83 | |
| 4aaj_A | 228 | N-(5'-phosphoribosyl)anthranilate isomerase; alpha | 97.82 | |
| 2agk_A | 260 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) me | 97.8 | |
| 2hsa_B | 402 | 12-oxophytodienoate reductase 3; alpha beta 8 barr | 97.8 | |
| 1gte_A | 1025 | Dihydropyrimidine dehydrogenase; electron transfer | 97.77 | |
| 2w6r_A | 266 | Imidazole glycerol phosphate synthase subunit HISF | 97.75 | |
| 3oix_A | 345 | Putative dihydroorotate dehydrogenase; dihydrooro | 97.75 | |
| 1p0k_A | 349 | Isopentenyl-diphosphate delta-isomerase; terpene b | 97.75 | |
| 1nvm_A | 345 | HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered | 97.74 | |
| 1pii_A | 452 | N-(5'phosphoribosyl)anthranilate isomerase; bifunc | 97.73 | |
| 1eep_A | 404 | Inosine 5'-monophosphate dehydrogenase; alpha-beta | 97.72 | |
| 1icp_A | 376 | OPR1, 12-oxophytodienoate reductase 1; beta-alpha- | 97.67 | |
| 2qr6_A | 393 | IMP dehydrogenase/GMP reductase; NP_599840.1, G re | 97.67 | |
| 4fxs_A | 496 | Inosine-5'-monophosphate dehydrogenase; structural | 97.66 | |
| 4avf_A | 490 | Inosine-5'-monophosphate dehydrogenase; oxidoreduc | 97.63 | |
| 3kts_A | 192 | Glycerol uptake operon antiterminator regulatory; | 97.63 | |
| 1ypf_A | 336 | GMP reductase; GUAC, purines, pyrimidines, nucleos | 97.62 | |
| 2nli_A | 368 | Lactate oxidase; flavoenzyme, FMN, D-lactate, oxid | 97.61 | |
| 1ka9_F | 252 | Imidazole glycerol phosphtate synthase; riken stru | 97.6 | |
| 1gox_A | 370 | (S)-2-hydroxy-acid oxidase, peroxisomal; oxidoredu | 97.59 | |
| 3aty_A | 379 | Tcoye, prostaglandin F2A synthase; alpha/beta barr | 97.58 | |
| 1p4c_A | 380 | L(+)-mandelate dehydrogenase; TIM barrel, hydroxy | 97.58 | |
| 3usb_A | 511 | Inosine-5'-monophosphate dehydrogenase; structural | 97.54 | |
| 3cwo_X | 237 | Beta/alpha-barrel protein based on 1THF and 1TMY; | 97.52 | |
| 2yzr_A | 330 | Pyridoxal biosynthesis lyase PDXS; redox protein, | 97.5 | |
| 1o94_A | 729 | Tmadh, trimethylamine dehydrogenase; electron tran | 97.5 | |
| 1vcf_A | 332 | Isopentenyl-diphosphate delta-isomerase; TIM barre | 97.5 | |
| 1vhn_A | 318 | Putative flavin oxidoreducatase; structural genomi | 97.46 | |
| 1jcn_A | 514 | Inosine monophosphate dehydrogenase I; IMPD, IMPDH | 97.43 | |
| 1thf_D | 253 | HISF protein; thermophIle, TIM-barrel, histidine b | 97.42 | |
| 1qo2_A | 241 | Molecule: N-((5-phosphoribosyl)-formimino)-5-amino | 97.38 | |
| 3r2g_A | 361 | Inosine 5'-monophosphate dehydrogenase; structural | 97.37 | |
| 2nzl_A | 392 | Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, G | 97.35 | |
| 2c6q_A | 351 | GMP reductase 2; TIM barrel, metal-binding, NADP, | 97.35 | |
| 2qjg_A | 273 | Putative aldolase MJ0400; beta-alpha barrel, lyase | 97.31 | |
| 1kbi_A | 511 | Cytochrome B2, L-LCR; flavocytochrome B2, electron | 97.26 | |
| 2gou_A | 365 | Oxidoreductase, FMN-binding; OLD yeallow enzyme, f | 97.22 | |
| 3k30_A | 690 | Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi | 97.21 | |
| 2bdq_A | 224 | Copper homeostasis protein CUTC; alpha beta protei | 97.16 | |
| 2y88_A | 244 | Phosphoribosyl isomerase A; aromatic amino acid bi | 97.15 | |
| 2czd_A | 208 | Orotidine 5'-phosphate decarboxylase; pyrimidine b | 97.13 | |
| 2agk_A | 260 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) me | 97.05 | |
| 1h5y_A | 253 | HISF; histidine biosynthesis, TIM-barrel; 2.0A {Py | 97.04 | |
| 1vzw_A | 244 | Phosphoribosyl isomerase A; histidine biosynthesis | 97.03 | |
| 1q6o_A | 216 | Humps, 3-keto-L-gulonate 6-phosphate decarboxylase | 97.02 | |
| 1vrd_A | 494 | Inosine-5'-monophosphate dehydrogenase; TM1347, st | 96.96 | |
| 3vkj_A | 368 | Isopentenyl-diphosphate delta-isomerase; type 2 is | 96.9 | |
| 4gj1_A | 243 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) me | 96.86 | |
| 3sr7_A | 365 | Isopentenyl-diphosphate delta-isomerase; isopenten | 96.78 | |
| 1twd_A | 256 | Copper homeostasis protein CUTC; TIM-like protein, | 96.74 | |
| 1w8s_A | 263 | FBP aldolase, fructose-bisphosphate aldolase class | 96.74 | |
| 1vc4_A | 254 | Indole-3-glycerol phosphate synthase; lyase, trypt | 96.63 | |
| 1vkf_A | 188 | Glycerol uptake operon antiterminator-related Pro; | 96.59 | |
| 1me8_A | 503 | Inosine-5'-monophosphate dehydrogenase; alpha beta | 96.54 | |
| 3exr_A | 221 | RMPD (hexulose-6-phosphate synthase); beta barrel, | 96.53 | |
| 1zfj_A | 491 | Inosine monophosphate dehydrogenase; IMPDH, CBS do | 96.49 | |
| 4a3u_A | 358 | NCR, NADH\:flavin oxidoreductase/NADH oxidase; HET | 96.47 | |
| 1jvn_A | 555 | Glutamine, bifunctional histidine biosynthesis pro | 96.23 | |
| 3qja_A | 272 | IGPS, indole-3-glycerol phosphate synthase; struct | 96.09 | |
| 3tsm_A | 272 | IGPS, indole-3-glycerol phosphate synthase; struct | 96.04 | |
| 1to3_A | 304 | Putative aldolase YIHT; beta-alpha barrel, structu | 95.92 | |
| 2p10_A | 286 | MLL9387 protein; putative phosphonopyruvate hydrol | 95.91 | |
| 1ea0_A | 1479 | Glutamate synthase [NADPH] large chain; oxidoreduc | 95.89 | |
| 3glc_A | 295 | Aldolase LSRF; TIM barrel, lyase, schiff base; HET | 95.85 | |
| 2cu0_A | 486 | Inosine-5'-monophosphate dehydrogenase; structural | 95.83 | |
| 1mzh_A | 225 | Deoxyribose-phosphate aldolase; alpha-beta barrel, | 95.82 | |
| 1ofd_A | 1520 | Ferredoxin-dependent glutamate synthase 2; oxidore | 95.81 | |
| 4af0_A | 556 | Inosine-5'-monophosphate dehydrogenase; oxidoreduc | 95.73 | |
| 2qr6_A | 393 | IMP dehydrogenase/GMP reductase; NP_599840.1, G re | 95.7 | |
| 1aj0_A | 282 | DHPS, dihydropteroate synthase; antibiotic, resist | 95.49 | |
| 1o4u_A | 285 | Type II quinolic acid phosphoribosyltransferase; s | 95.44 | |
| 1x1o_A | 286 | Nicotinate-nucleotide pyrophosphorylase; transfera | 95.03 | |
| 3tr9_A | 314 | Dihydropteroate synthase; biosynthesis of cofactor | 94.9 | |
| 2b7n_A | 273 | Probable nicotinate-nucleotide pyrophosphorylase; | 94.76 | |
| 2yxb_A | 161 | Coenzyme B12-dependent mutase; alpha/beta, structu | 94.65 | |
| 2jbm_A | 299 | Nicotinate-nucleotide pyrophosphorylase; NAD, enzy | 94.51 | |
| 1qap_A | 296 | Quinolinic acid phosphoribosyltransferase; glycosy | 94.45 | |
| 1zfj_A | 491 | Inosine monophosphate dehydrogenase; IMPDH, CBS do | 94.31 | |
| 3c2e_A | 294 | Nicotinate-nucleotide pyrophosphorylase; qprtase, | 94.09 | |
| 3tjl_A | 407 | NADPH dehydrogenase; OLD yellow enzyme, flavin mon | 94.05 | |
| 1vrd_A | 494 | Inosine-5'-monophosphate dehydrogenase; TM1347, st | 93.97 | |
| 2jgq_A | 233 | Triosephosphate isomerase; glycolysis, pentose shu | 93.93 | |
| 3tqv_A | 287 | Nicotinate-nucleotide pyrophosphorylase; glycosylt | 93.52 | |
| 2dqw_A | 294 | Dihydropteroate synthase; dimer, structural genomi | 93.52 | |
| 3tjx_A | 354 | Dihydroorotate dehydrogenase; PYRD, dhodh, lmdhodh | 93.51 | |
| 3noy_A | 366 | 4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth; | 93.46 | |
| 2y5s_A | 294 | DHPS, dihydropteroate synthase; transferase, folat | 93.37 | |
| 1pii_A | 452 | N-(5'phosphoribosyl)anthranilate isomerase; bifunc | 93.26 | |
| 1xg4_A | 295 | Probable methylisocitrate lyase; 2-methylisocitrat | 93.21 | |
| 3m47_A | 228 | Orotidine 5'-phosphate decarboxylase; orotidine 5' | 92.97 | |
| 1yya_A | 250 | Triosephosphate isomerase; riken structural genomi | 92.92 | |
| 2btm_A | 252 | TIM, protein (triosephosphate isomerase); thermoph | 92.91 | |
| 3paj_A | 320 | Nicotinate-nucleotide pyrophosphorylase, carboxyl; | 92.91 | |
| 3m9y_A | 254 | Triosephosphate isomerase; TIM barrel, glycolysis, | 92.86 | |
| 4fxs_A | 496 | Inosine-5'-monophosphate dehydrogenase; structural | 92.83 | |
| 4avf_A | 490 | Inosine-5'-monophosphate dehydrogenase; oxidoreduc | 92.78 | |
| 3igs_A | 232 | N-acetylmannosamine-6-phosphate 2-epimerase 2; ene | 92.65 | |
| 1tx2_A | 297 | DHPS, dihydropteroate synthase; folate biosynthesi | 92.63 | |
| 1w5q_A | 337 | Delta-aminolevulinic acid dehydratase; synthase, e | 92.51 | |
| 1hg3_A | 225 | Triosephosphate isomerase; thermostability, tetram | 92.47 | |
| 1eye_A | 280 | DHPS 1, dihydropteroate synthase I; alpha-beta bar | 92.41 | |
| 4fo4_A | 366 | Inosine 5'-monophosphate dehydrogenase; structural | 92.4 | |
| 2vp8_A | 318 | Dihydropteroate synthase 2; RV1207 transferase, fo | 92.37 | |
| 1mo0_A | 275 | TIM, triosephosphate isomerase; structural genomic | 92.37 | |
| 1r2r_A | 248 | TIM, triosephosphate isomerase; closed loop confor | 92.31 | |
| 4djd_D | 323 | C/Fe-SP, corrinoid/iron-sulfur protein small subun | 92.31 | |
| 2i9e_A | 259 | Triosephosphate isomerase; 2.00A {Tenebrio molitor | 92.31 | |
| 2i2x_B | 258 | MTAC, methyltransferase 1; TIM barrel and helix bu | 92.29 | |
| 2vxn_A | 251 | Triosephosphate isomerase; fatty acid biosynthesis | 92.23 | |
| 1qpo_A | 284 | Quinolinate acid phosphoribosyl transferase; type | 92.22 | |
| 2yc6_A | 257 | Triosephosphate isomerase; glycolysis; HET: PGA; 1 | 92.2 | |
| 2j27_A | 250 | Triosephosphate isomerase glycosomal; TIM, 2PG, LO | 92.18 | |
| 3r2g_A | 361 | Inosine 5'-monophosphate dehydrogenase; structural | 92.16 | |
| 2v5b_A | 244 | Triosephosphate isomerase; TIM, unfolding, monotct | 92.12 | |
| 1y80_A | 210 | Predicted cobalamin binding protein; corrinoid, fa | 92.11 | |
| 1m6j_A | 261 | TIM, TPI, triosephosphate isomerase; asymmetry, mo | 92.07 | |
| 3mcm_A | 442 | 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine | 92.03 | |
| 1o5x_A | 248 | TIM, triosephosphate isomerase; 2- phosphoglycerat | 91.95 | |
| 1b9b_A | 255 | TIM, protein (triosephosphate isomerase); thermoph | 91.86 | |
| 1aw2_A | 256 | Triosephosphate isomerase; psychrophilic, vibrio m | 91.85 | |
| 3ezx_A | 215 | MMCP 1, monomethylamine corrinoid protein 1; N ter | 91.79 | |
| 1ney_A | 247 | TIM, triosephosphate isomerase; yeast, DHAP, dihyd | 91.69 | |
| 2c6q_A | 351 | GMP reductase 2; TIM barrel, metal-binding, NADP, | 91.5 | |
| 1tre_A | 255 | Triosephosphate isomerase; intramolecular oxidored | 91.47 | |
| 3th6_A | 249 | Triosephosphate isomerase; alpha/beta barrel, embr | 91.46 | |
| 3khj_A | 361 | Inosine-5-monophosphate dehydrogenase; enzyme-inhi | 91.45 | |
| 1p0k_A | 349 | Isopentenyl-diphosphate delta-isomerase; terpene b | 91.42 | |
| 1w1z_A | 328 | Delta-aminolevulinic acid dehydratase; synthase, t | 91.36 | |
| 3sgz_A | 352 | Hydroxyacid oxidase 2; flavoprotein, homology, INH | 91.35 | |
| 1pv8_A | 330 | Delta-aminolevulinic acid dehydratase; porphobilin | 91.17 | |
| 3ve9_A | 215 | Orotidine-5'-phosphate decarboxylase; TIM barrel f | 91.11 | |
| 3vkj_A | 368 | Isopentenyl-diphosphate delta-isomerase; type 2 is | 91.05 | |
| 4af0_A | 556 | Inosine-5'-monophosphate dehydrogenase; oxidoreduc | 90.98 | |
| 1eep_A | 404 | Inosine 5'-monophosphate dehydrogenase; alpha-beta | 90.96 | |
| 3krs_A | 271 | Triosephosphate isomerase; ssgcid, SBRI, emerald b | 90.56 | |
| 3qst_A | 255 | Triosephosphate isomerase, putative; TIM barrel; 1 | 90.55 | |
| 1w0m_A | 226 | TIM, triosephosphate isomerase; glycolysis, glucon | 90.36 | |
| 2yci_X | 271 | 5-methyltetrahydrofolate corrinoid/iron sulfur PR | 90.16 | |
| 3ffs_A | 400 | Inosine-5-monophosphate dehydrogenase; beta-alpha | 90.0 | |
| 1vqt_A | 213 | Orotidine 5'-phosphate decarboxylase; TM0332, stru | 89.95 | |
| 3gnn_A | 298 | Nicotinate-nucleotide pyrophosphorylase; decode bi | 89.9 | |
| 3q58_A | 229 | N-acetylmannosamine-6-phosphate 2-epimerase; TIM b | 89.9 | |
| 1h7n_A | 342 | 5-aminolaevulinic acid dehydratase; lyase, aldolas | 89.78 | |
| 4g1k_A | 272 | Triosephosphate isomerase; structural genomics, se | 89.15 | |
| 2qiw_A | 255 | PEP phosphonomutase; structural genomics, joint ce | 89.06 | |
| 1f6y_A | 262 | 5-methyltetrahydrofolate corrinoid/iron sulfur PR | 89.0 | |
| 1jcn_A | 514 | Inosine monophosphate dehydrogenase I; IMPD, IMPDH | 88.95 | |
| 3sr7_A | 365 | Isopentenyl-diphosphate delta-isomerase; isopenten | 88.46 | |
| 1ydn_A | 295 | Hydroxymethylglutaryl-COA lyase; TIM-barrel protei | 88.4 | |
| 1zco_A | 262 | 2-dehydro-3-deoxyphosphoheptonate aldolase; arabin | 88.4 | |
| 1eix_A | 245 | Orotidine 5'-monophosphate decarboxylase; alpha-be | 88.2 | |
| 1ypf_A | 336 | GMP reductase; GUAC, purines, pyrimidines, nucleos | 87.93 | |
| 3ru6_A | 303 | Orotidine 5'-phosphate decarboxylase; structural g | 87.88 | |
| 2yyu_A | 246 | Orotidine 5'-phosphate decarboxylase; TIM barrel, | 87.81 | |
| 1l6s_A | 323 | Porphobilinogen synthase; dehydratase, lyase; HET: | 87.71 | |
| 3oa3_A | 288 | Aldolase; structural genomics, seattle structural | 87.57 | |
| 2fli_A | 220 | Ribulose-phosphate 3-epimerase; (beta/alpha)8-barr | 87.54 | |
| 3usb_A | 511 | Inosine-5'-monophosphate dehydrogenase; structural | 87.17 | |
| 4dbe_A | 222 | Orotidine 5'-phosphate decarboxylase; TIM barrel, | 87.08 | |
| 2v82_A | 212 | 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; l | 87.05 | |
| 3l0g_A | 300 | Nicotinate-nucleotide pyrophosphorylase; ssgcid, N | 86.9 | |
| 3ta6_A | 267 | Triosephosphate isomerase; HET: FLC; 1.41A {Mycoba | 86.81 | |
| 1dbt_A | 239 | Orotidine 5'-phosphate decarboxylase; UMP, TIM bar | 86.78 | |
| 3k13_A | 300 | 5-methyltetrahydrofolate-homocysteine methyltrans; | 86.74 | |
| 4adt_A | 297 | Pyridoxine biosynthetic enzyme PDX1 homologue, PU; | 86.65 | |
| 1gox_A | 370 | (S)-2-hydroxy-acid oxidase, peroxisomal; oxidoredu | 86.2 | |
| 3ih1_A | 305 | Methylisocitrate lyase; alpha-beta structure, TIM- | 86.09 | |
| 3bul_A | 579 | Methionine synthase; transferase, reactivation con | 85.98 | |
| 3flu_A | 297 | DHDPS, dihydrodipicolinate synthase; TIM barrel, b | 85.95 | |
| 2nzl_A | 392 | Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, G | 85.51 | |
| 1o66_A | 275 | 3-methyl-2-oxobutanoate hydroxymethyltransferase; | 84.68 | |
| 3kxq_A | 275 | Triosephosphate isomerase; ssgcid, NIH, niaid, SBR | 84.67 | |
| 3dxi_A | 320 | Putative aldolase; TIM barrel, 11107N, PSI2, NYSGX | 84.32 | |
| 1ccw_A | 137 | Protein (glutamate mutase); coenzyme B12, radical | 84.28 | |
| 1req_A | 727 | Methylmalonyl-COA mutase; isomerase, intramolecula | 84.14 | |
| 3fkr_A | 309 | L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL f | 84.1 | |
| 1vli_A | 385 | Spore coat polysaccharide biosynthesis protein SP; | 83.72 | |
| 3obk_A | 356 | Delta-aminolevulinic acid dehydratase; ssgcid, str | 83.71 | |
| 2ftp_A | 302 | Hydroxymethylglutaryl-COA lyase; structural genomi | 83.61 | |
| 1geq_A | 248 | Tryptophan synthase alpha-subunit; hyperthermophIl | 83.53 | |
| 1xrs_B | 262 | D-lysine 5,6-aminomutase beta subunit; TIM barrel, | 83.25 | |
| 3ndo_A | 231 | Deoxyribose-phosphate aldolase; ssgcid, NIH, niaid | 83.1 | |
| 2xij_A | 762 | Methylmalonyl-COA mutase, mitochondrial; isomerase | 82.82 | |
| 2nli_A | 368 | Lactate oxidase; flavoenzyme, FMN, D-lactate, oxid | 82.63 | |
| 3kp1_A | 763 | D-ornithine aminomutase E component; 5 aminomutase | 82.52 | |
| 2pgw_A | 384 | Muconate cycloisomerase; enolase superfamily, octa | 81.89 | |
| 3ngj_A | 239 | Deoxyribose-phosphate aldolase; lyase, structural | 81.61 | |
| 1ub3_A | 220 | Aldolase protein; schiff base, deoxyribose phospha | 81.2 | |
| 3qze_A | 314 | DHDPS, dihydrodipicolinate synthase; alpha beta ba | 80.9 | |
| 1me8_A | 503 | Inosine-5'-monophosphate dehydrogenase; alpha beta | 80.85 | |
| 1kbi_A | 511 | Cytochrome B2, L-LCR; flavocytochrome B2, electron | 80.83 | |
| 1mdl_A | 359 | Mandelate racemase; isomerase, mandelate pathway, | 80.71 | |
| 3cpr_A | 304 | Dihydrodipicolinate synthetase; (beta/alpha)8-barr | 80.64 | |
| 1xky_A | 301 | Dihydrodipicolinate synthase; TIM barrel, , lysine | 80.51 | |
| 2ovl_A | 371 | Putative racemase; structural genomics, PSI-2, pro | 80.21 | |
| 2nql_A | 388 | AGR_PAT_674P, isomerase/lactonizing enzyme; enolas | 80.13 | |
| 3l21_A | 304 | DHDPS, dihydrodipicolinate synthase; DAPA, dimer, | 80.12 | |
| 2vef_A | 314 | Dihydropteroate synthase; antibiotic resistance, t | 80.05 |
| >3tha_A Tryptophan synthase alpha chain; structural genomics, center for structural genomics of infec diseases, csgid, lyase; 2.37A {Campylobacter jejuni} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-39 Score=282.78 Aligned_cols=198 Identities=15% Similarity=0.238 Sum_probs=167.2
Q ss_pred ecccccccCCCCCCCcchHHHHHHHHHhhCCCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHH----------
Q psy9039 13 HDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLC---------- 82 (251)
Q Consensus 13 ~~~p~~~~~pG~P~~~~~~~~i~~~a~~~a~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i---------- 82 (251)
-++||+|+ |||+.+.|.+.+ ++|+++|+ |.|| +|+|||||++|||+||+|..|.+
T Consensus 15 ali~yita--G~P~~~~t~~~~--------~~l~~~Ga-D~iE----lGiPfSDP~aDGpvIq~a~~rAL~~g~~~~~~~ 79 (252)
T 3tha_A 15 ANVAYTVL--GYPNLQTSEAFL--------QRLDQSPI-DILE----LGVAYSDPIADGEIIADAAKIALDQGVDIHSVF 79 (252)
T ss_dssp EEEEEEET--TSSCHHHHHHHH--------HTGGGSSC-SEEE----EECCCSCCCSCCCHHHHHHHHHHHTTCCHHHHH
T ss_pred CeEEEEeC--CCCCHHHHHHHH--------HHHHHcCC-CEEE----ECCCCCCCCCCcHHHHHHHHHHHHCCCCHHHHH
Confidence 58999999 999999999999 99999999 9997 59999999999999999999743
Q ss_pred HHHHHhCCCCccEEEEEeeCChHHHHHHHHHcCccceecccccccccCCCceeecC-----cchhHHHHHhcCCCcchhh
Q psy9039 83 AEIRKVLPPSVPVGVQILSGCNKAALATAQAAGLDFIRAESFVFGHMADEGLMNAQ-----AGPLLRYRKQIGADNVLVF 157 (251)
Q Consensus 83 ~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g~~Fir~~~~~~~~~~~~Gli~~d-----a~e~~~~r~~l~~~~i~i~ 157 (251)
+.+++.... +|+.+|.|+|+ +.++|+ .+|++.+ ..+|.+|+|+|| ..++.+..+++|.+.|.++
T Consensus 80 ~~~~~~r~~-~Pivlm~Y~N~-i~~~G~-----e~F~~~~----~~aGvdG~IipDLP~eE~~~~~~~~~~~Gl~~I~lv 148 (252)
T 3tha_A 80 ELLARIKTK-KALVFMVYYNL-IFSYGL-----EKFVKKA----KSLGICALIVPELSFEESDDLIKECERYNIALITLV 148 (252)
T ss_dssp HHHHHCCCS-SEEEEECCHHH-HHHHCH-----HHHHHHH----HHTTEEEEECTTCCGGGCHHHHHHHHHTTCEECEEE
T ss_pred HHHHHHhcC-CCEEEEeccCH-HHHhhH-----HHHHHHH----HHcCCCEEEeCCCCHHHHHHHHHHHHHcCCeEEEEe
Confidence 334433222 59999999997 999999 5899975 667799999999 5566667777787766665
Q ss_pred hhhHhhccCCCCCCcccHHHHHHHhh-h-ccccEEEecCCCCCCCCCH-HHHHHHHhcCCCCEEEecCC-ChHhHHHhhc
Q psy9039 158 TDIKKKHSSHAITADVDITETAKAAS-F-FLSDGLIITGNATGDPADV-SQLMSVKNAVDLPILIGSGV-TSDNVEHYMT 233 (251)
Q Consensus 158 a~v~~k~~~~~~~~~~~i~~~a~~a~-~-~~~D~v~VTG~~~g~~~~~-~~l~~vr~~~~~PV~vG~GI-~~~~v~~~~~ 233 (251)
+ | +++++|++++++.+. | |+++..+|||.++....+. +.++++|+.+++||++|||| ++++++++.+
T Consensus 149 a--------P-~t~~eRi~~ia~~a~gFiY~Vs~~GvTG~~~~~~~~~~~~v~~vr~~~~~Pv~vGfGIst~e~a~~~~~ 219 (252)
T 3tha_A 149 S--------V-TTPKERVKKLVKHAKGFIYLLASIGITGTKSVEEAILQDKVKEIRSFTNLPIFVGFGIQNNQDVKRMRK 219 (252)
T ss_dssp E--------T-TSCHHHHHHHHTTCCSCEEEECCSCSSSCSHHHHHHHHHHHHHHHTTCCSCEEEESSCCSHHHHHHHTT
T ss_pred C--------C-CCcHHHHHHHHHhCCCeEEEEecCCCCCcccCCCHHHHHHHHHHHHhcCCcEEEEcCcCCHHHHHHHHh
Confidence 2 3 256789999998886 7 8899889999986554443 77999999999999999999 7999999998
Q ss_pred -CCEEEEeceEee
Q psy9039 234 -ADALIIGSHFKQ 245 (251)
Q Consensus 234 -ADGvIVGS~~~~ 245 (251)
||||||||+|++
T Consensus 220 ~ADGVIVGSAiVk 232 (252)
T 3tha_A 220 VADGVIVGTSIVK 232 (252)
T ss_dssp TSSEEEECHHHHH
T ss_pred cCCEEEECHHHHH
Confidence 999999999986
|
| >3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4 | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-38 Score=278.55 Aligned_cols=197 Identities=20% Similarity=0.311 Sum_probs=161.5
Q ss_pred ecccccccCCCCCCCcchHHHHHHHHHhhCCCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHH------------
Q psy9039 13 HDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTR------------ 80 (251)
Q Consensus 13 ~~~p~~~~~pG~P~~~~~~~~i~~~a~~~a~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~------------ 80 (251)
-++||+++ |||+++.+.+.+ ++|+++|+ |.|+ +|+|||||++|||+||+|+.|
T Consensus 21 ali~yi~a--GdP~~~~~~~~~--------~~l~~~Ga-D~iE----lGiPfSDP~aDGpvIq~a~~rAL~~G~~~~~~~ 85 (271)
T 3nav_A 21 AFVPFVTI--GDPNPEQSLAIM--------QTLIDAGA-DALE----LGMPFSDPLADGPTIQGANLRALAAKTTPDICF 85 (271)
T ss_dssp EEEEEEET--TSSCHHHHHHHH--------HHHHHTTC-SSEE----EECCCCCGGGCCSHHHHHHHHHHHTTCCHHHHH
T ss_pred eEEEEEeC--CCCCHHHHHHHH--------HHHHHcCC-CEEE----ECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHH
Confidence 48999999 999999999999 99999999 9997 599999999999999999885
Q ss_pred -HHHHHHHh-CCCCccEEEEEeeCChHHHHHHHHHcCccceecccccccccCCCceeecC-----cchhHHHHHhcCCCc
Q psy9039 81 -LCAEIRKV-LPPSVPVGVQILSGCNKAALATAQAAGLDFIRAESFVFGHMADEGLMNAQ-----AGPLLRYRKQIGADN 153 (251)
Q Consensus 81 -~i~~vr~~-~~~~~P~Gvn~~~N~~~~~~~ia~a~g~~Fir~~~~~~~~~~~~Gli~~d-----a~e~~~~r~~l~~~~ 153 (251)
+++++|+. .+ +|+++|.|+|+ ++++++ .+|++.+ ..+|.+|+|.|| ..++.++.++.|.+.
T Consensus 86 ~~v~~~r~~~~~--~Pivlm~Y~n~-v~~~g~-----~~f~~~~----~~aGvdGvIipDlp~ee~~~~~~~~~~~gl~~ 153 (271)
T 3nav_A 86 ELIAQIRARNPE--TPIGLLMYANL-VYARGI-----DDFYQRC----QKAGVDSVLIADVPTNESQPFVAAAEKFGIQP 153 (271)
T ss_dssp HHHHHHHHHCTT--SCEEEEECHHH-HHHTCH-----HHHHHHH----HHHTCCEEEETTSCGGGCHHHHHHHHHTTCEE
T ss_pred HHHHHHHhcCCC--CCEEEEecCcH-HHHHhH-----HHHHHHH----HHCCCCEEEECCCCHHHHHHHHHHHHHcCCeE
Confidence 66889887 56 79999999998 899998 4899975 567799999999 455667777777766
Q ss_pred chhhhhhHhhccCCCCCCcccHHHHHHHhh-h-ccccEEEecCCCCCCCCCH-HHHHHHHhcCCCCEEEecCC-ChHhHH
Q psy9039 154 VLVFTDIKKKHSSHAITADVDITETAKAAS-F-FLSDGLIITGNATGDPADV-SQLMSVKNAVDLPILIGSGV-TSDNVE 229 (251)
Q Consensus 154 i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~-~-~~~D~v~VTG~~~g~~~~~-~~l~~vr~~~~~PV~vG~GI-~~~~v~ 229 (251)
+.+++ | +++++|++++++.+. | |+++..++||.++..+.+. ++++++|+.+++||++|||| |+++++
T Consensus 154 I~lva--------p-~t~~eri~~i~~~~~gfiY~vs~~GvTG~~~~~~~~~~~~v~~vr~~~~~Pv~vGfGIst~e~~~ 224 (271)
T 3nav_A 154 IFIAP--------P-TASDETLRAVAQLGKGYTYLLSRAGVTGAETKANMPVHALLERLQQFDAPPALLGFGISEPAQVK 224 (271)
T ss_dssp EEEEC--------T-TCCHHHHHHHHHHCCSCEEECCCC--------CCHHHHHHHHHHHHTTCCCEEECSSCCSHHHHH
T ss_pred EEEEC--------C-CCCHHHHHHHHHHCCCeEEEEeccCCCCcccCCchhHHHHHHHHHHhcCCCEEEECCCCCHHHHH
Confidence 66652 3 256689999999886 7 8889999999987766554 77999999999999999999 699999
Q ss_pred H-hhc-CCEEEEeceEee
Q psy9039 230 H-YMT-ADALIIGSHFKQ 245 (251)
Q Consensus 230 ~-~~~-ADGvIVGS~~~~ 245 (251)
+ +.. ||||||||+|++
T Consensus 225 ~~~~~gADgvIVGSAiv~ 242 (271)
T 3nav_A 225 QAIEAGAAGAISGSAVVK 242 (271)
T ss_dssp HHHHTTCSEEEESHHHHH
T ss_pred HHHHcCCCEEEECHHHHH
Confidence 4 545 999999999975
|
| >3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-36 Score=269.22 Aligned_cols=197 Identities=16% Similarity=0.254 Sum_probs=162.3
Q ss_pred ecccccccCCCCCCCcchHHHHHHHHHhhCCCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHH-------------
Q psy9039 13 HDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMT------------- 79 (251)
Q Consensus 13 ~~~p~~~~~pG~P~~~~~~~~i~~~a~~~a~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~------------- 79 (251)
-++||+++ |||+++.+.+.+ ++|+++|+ |.|+ +|+|||||++|||+||++..
T Consensus 19 ali~yi~a--GdP~~~~~~~~~--------~~l~~~Ga-D~iE----lgiPfSDP~aDGp~Iq~a~~~AL~~G~~~~~~~ 83 (267)
T 3vnd_A 19 AFVPFVTI--GDPSPELSLKII--------QTLVDNGA-DALE----LGFPFSDPLADGPVIQGANLRSLAAGTTSSDCF 83 (267)
T ss_dssp EEEEEEET--TSSCHHHHHHHH--------HHHHHTTC-SSEE----EECCCSCCTTCCHHHHHHHHHHHHTTCCHHHHH
T ss_pred eEEEEEeC--CCCCHHHHHHHH--------HHHHHcCC-CEEE----ECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHH
Confidence 47999999 999999999999 99999999 9997 59999999999999999885
Q ss_pred HHHHHHHHh-CCCCccEEEEEeeCChHHHHHHHHHcCccceecccccccccCCCceeecC-----cchhHHHHHhcCCCc
Q psy9039 80 RLCAEIRKV-LPPSVPVGVQILSGCNKAALATAQAAGLDFIRAESFVFGHMADEGLMNAQ-----AGPLLRYRKQIGADN 153 (251)
Q Consensus 80 ~~i~~vr~~-~~~~~P~Gvn~~~N~~~~~~~ia~a~g~~Fir~~~~~~~~~~~~Gli~~d-----a~e~~~~r~~l~~~~ 153 (251)
++++++|+. ++ +|+++|.|+|+ ++++++ .+|++.+ ..+|.+|++.+| ..++.++.++.|.+.
T Consensus 84 ~~v~~ir~~~~~--~Pivlm~Y~np-v~~~g~-----e~f~~~~----~~aGvdgvii~Dlp~ee~~~~~~~~~~~gl~~ 151 (267)
T 3vnd_A 84 DIITKVRAQHPD--MPIGLLLYANL-VFANGI-----DEFYTKA----QAAGVDSVLIADVPVEESAPFSKAAKAHGIAP 151 (267)
T ss_dssp HHHHHHHHHCTT--CCEEEEECHHH-HHHHCH-----HHHHHHH----HHHTCCEEEETTSCGGGCHHHHHHHHHTTCEE
T ss_pred HHHHHHHhcCCC--CCEEEEecCcH-HHHhhH-----HHHHHHH----HHcCCCEEEeCCCCHhhHHHHHHHHHHcCCeE
Confidence 467889987 66 79999999998 899998 4899975 567799999998 456666777777766
Q ss_pred chhhhhhHhhccCCCCCCcccHHHHHHHhh-h-ccccEEEecCCCCCCCCCH-HHHHHHHhcCCCCEEEecCC-ChHhHH
Q psy9039 154 VLVFTDIKKKHSSHAITADVDITETAKAAS-F-FLSDGLIITGNATGDPADV-SQLMSVKNAVDLPILIGSGV-TSDNVE 229 (251)
Q Consensus 154 i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~-~-~~~D~v~VTG~~~g~~~~~-~~l~~vr~~~~~PV~vG~GI-~~~~v~ 229 (251)
+.+++ | +++.+|++.+++.+. | |.++..++||.+++.+++. ++++++|+.+++||++|||| |+++++
T Consensus 152 i~lia--------P-~t~~eri~~i~~~~~gfvY~vS~~GvTG~~~~~~~~~~~~v~~vr~~~~~pv~vGfGI~~~e~~~ 222 (267)
T 3vnd_A 152 IFIAP--------P-NADADTLKMVSEQGEGYTYLLSRAGVTGTESKAGEPIENILTQLAEFNAPPPLLGFGIAEPEQVR 222 (267)
T ss_dssp ECEEC--------T-TCCHHHHHHHHHHCCSCEEESCCCCCC--------CHHHHHHHHHTTTCCCEEECSSCCSHHHHH
T ss_pred EEEEC--------C-CCCHHHHHHHHHhCCCcEEEEecCCCCCCccCCcHHHHHHHHHHHHhcCCCEEEECCcCCHHHHH
Confidence 66652 3 256689999999987 7 8889999999998776665 78999999999999999999 699999
Q ss_pred -Hhhc-CCEEEEeceEee
Q psy9039 230 -HYMT-ADALIIGSHFKQ 245 (251)
Q Consensus 230 -~~~~-ADGvIVGS~~~~ 245 (251)
.+.. |||+||||+|++
T Consensus 223 ~~~~~gADgvVVGSaiv~ 240 (267)
T 3vnd_A 223 AAIKAGAAGAISGSAVVK 240 (267)
T ss_dssp HHHHTTCSEEEECHHHHH
T ss_pred HHHHcCCCEEEECHHHHH
Confidence 4556 999999999975
|
| >1ujp_A Tryptophan synthase alpha chain; riken structural genomics/P initiative, RSGI, structural genomics, lyase; HET: CIT; 1.34A {Thermus thermophilus} SCOP: c.1.2.4 PDB: 1wxj_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-34 Score=256.13 Aligned_cols=196 Identities=19% Similarity=0.301 Sum_probs=146.9
Q ss_pred ecccccccCCCCCCCcchHHHHHHHHHhhCCCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHH-----------
Q psy9039 13 HDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRL----------- 81 (251)
Q Consensus 13 ~~~p~~~~~pG~P~~~~~~~~i~~~a~~~a~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~----------- 81 (251)
-++||+++ |||+++.+.+.+ ++|+++ + |+||| |+|||||++|||+||+++.+.
T Consensus 17 ~li~~i~~--GdP~~~~~~~~~--------~~l~~~-a-D~IEl----G~PfsdP~adGp~Iq~a~~~Al~~G~~~~~~~ 80 (271)
T 1ujp_A 17 ALIPYLTA--GFPSREGFLQAV--------EEVLPY-A-DLLEI----GLPYSDPLGDGPVIQRASELALRKGMSVQGAL 80 (271)
T ss_dssp EEEEEEET--TSSCHHHHHHHH--------HHHGGG-C-SSEEE----ECCCCC----CHHHHHHHHHHHHTTCCHHHHH
T ss_pred eEEEEecC--CCCChHHHHHHH--------HHHHhc-C-CEEEE----CCCCCCcccccHHHHHHHHHHHHcCCCHHHHH
Confidence 57999988 999999988888 889999 9 99975 999999999999999999986
Q ss_pred --HHHHHHhCCCCccEEEEEeeCChHHHHHHHHHcCccceecccccccccCCCceeecCc-----chhHHHHHhcCCCcc
Q psy9039 82 --CAEIRKVLPPSVPVGVQILSGCNKAALATAQAAGLDFIRAESFVFGHMADEGLMNAQA-----GPLLRYRKQIGADNV 154 (251)
Q Consensus 82 --i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g~~Fir~~~~~~~~~~~~Gli~~da-----~e~~~~r~~l~~~~i 154 (251)
++++|+..+ +|+++|.|+|+ +++++. .+|++.+ ...|.+|++.+|. .++.+..++.+.+.+
T Consensus 81 ~~v~~ir~~~~--~Pii~m~y~n~-v~~~g~-----~~f~~~~----~~aG~dGviv~Dl~~ee~~~~~~~~~~~gl~~i 148 (271)
T 1ujp_A 81 ELVREVRALTE--KPLFLMTYLNP-VLAWGP-----ERFFGLF----KQAGATGVILPDLPPDEDPGLVRLAQEIGLETV 148 (271)
T ss_dssp HHHHHHHHHCC--SCEEEECCHHH-HHHHCH-----HHHHHHH----HHHTCCEEECTTCCGGGCHHHHHHHHHHTCEEE
T ss_pred HHHHHHHhcCC--CCEEEEecCcH-HHHhhH-----HHHHHHH----HHcCCCEEEecCCCHHHHHHHHHHHHHcCCceE
Confidence 789998876 79999999995 888888 4898875 4556899999993 333334444444444
Q ss_pred hhhhhhHhhccCCCCCCcccHHHHHHHhh-h-ccccEEEecCCCCCCCCC-HHHHHHHHhcCCCCEEEecCC-ChHhHHH
Q psy9039 155 LVFTDIKKKHSSHAITADVDITETAKAAS-F-FLSDGLIITGNATGDPAD-VSQLMSVKNAVDLPILIGSGV-TSDNVEH 230 (251)
Q Consensus 155 ~i~a~v~~k~~~~~~~~~~~i~~~a~~a~-~-~~~D~v~VTG~~~g~~~~-~~~l~~vr~~~~~PV~vG~GI-~~~~v~~ 230 (251)
.+++ | +++.+|++++++.+. | |.++..++||.+++...+ .++++++|+.+++||++|||| |++++++
T Consensus 149 ~lia--------p-~s~~eri~~ia~~~~gfiy~vs~~G~TG~~~~~~~~~~~~v~~vr~~~~~Pv~vGfGI~t~e~a~~ 219 (271)
T 1ujp_A 149 FLLA--------P-TSTDARIATVVRHATGFVYAVSVTGVTGMRERLPEEVKDLVRRIKARTALPVAVGFGVSGKATAAQ 219 (271)
T ss_dssp CEEC--------T-TCCHHHHHHHHTTCCSCEEEECC------------CCHHHHHHHHTTCCSCEEEESCCCSHHHHHH
T ss_pred EEeC--------C-CCCHHHHHHHHHhCCCCEEEEecCcccCCCCCCCccHHHHHHHHHhhcCCCEEEEcCCCCHHHHHH
Confidence 4431 2 245678888888876 6 677888899998876655 478999999999999999999 5999999
Q ss_pred hhc-CCEEEEeceEeec
Q psy9039 231 YMT-ADALIIGSHFKQG 246 (251)
Q Consensus 231 ~~~-ADGvIVGS~~~~~ 246 (251)
+ . ||||||||+|++.
T Consensus 220 ~-~~ADgVIVGSAi~~~ 235 (271)
T 1ujp_A 220 A-AVADGVVVGSALVRA 235 (271)
T ss_dssp H-TTSSEEEECHHHHHH
T ss_pred h-cCCCEEEEChHHhcc
Confidence 9 9 9999999999875
|
| >2ekc_A AQ_1548, tryptophan synthase alpha chain; structural genomics, lyase, NPPSFA, national project on PROT structural and functional analyses; 2.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.1e-32 Score=244.05 Aligned_cols=198 Identities=16% Similarity=0.230 Sum_probs=152.3
Q ss_pred ecccccccCCCCCCCcchHHHHHHHHHhhCCCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHH-----------
Q psy9039 13 HDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRL----------- 81 (251)
Q Consensus 13 ~~~p~~~~~pG~P~~~~~~~~i~~~a~~~a~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~----------- 81 (251)
-++||+++ |||+++.+.+.+ ++|+++|+ |+|+| |+|||||++|||++|+++.+.
T Consensus 18 ~~i~~i~~--g~p~~~~~~~~~--------~~l~~~G~-D~IEl----G~P~sdP~adgp~i~~a~~~al~~G~~~~~~~ 82 (262)
T 2ekc_A 18 ALVSYLMV--GYPDYETSLKAF--------KEVLKNGT-DILEI----GFPFSDPVADGPTIQVAHEVALKNGIRFEDVL 82 (262)
T ss_dssp EEEEEEET--TSSCHHHHHHHH--------HHHHHTTC-SEEEE----ECCCSCCTTSCHHHHHHHHHHHHTTCCHHHHH
T ss_pred eEEEEecC--CCCChHHHHHHH--------HHHHHcCC-CEEEE----CCCCCCcccccHHHHHHHHHHHHcCCCHHHHH
Confidence 47999988 999999888888 88999999 99975 999999999999999997775
Q ss_pred --HHHHHHhC-CCCccEEEEEeeCChHHHHHHHHHcCccceecccccccccCCCceeecCc-----chhHHHHHhcCCCc
Q psy9039 82 --CAEIRKVL-PPSVPVGVQILSGCNKAALATAQAAGLDFIRAESFVFGHMADEGLMNAQA-----GPLLRYRKQIGADN 153 (251)
Q Consensus 82 --i~~vr~~~-~~~~P~Gvn~~~N~~~~~~~ia~a~g~~Fir~~~~~~~~~~~~Gli~~da-----~e~~~~r~~l~~~~ 153 (251)
++++|+.+ + +|+++|.|+|+ ++++++ .+|++.+ ...|.+|++.+|. .++.+..++.+.+.
T Consensus 83 ~~v~~ir~~~~~--~Pi~~m~y~n~-v~~~g~-----~~f~~~~----~~aG~dgvii~dl~~ee~~~~~~~~~~~gl~~ 150 (262)
T 2ekc_A 83 ELSETLRKEFPD--IPFLLMTYYNP-IFRIGL-----EKFCRLS----REKGIDGFIVPDLPPEEAEELKAVMKKYVLSF 150 (262)
T ss_dssp HHHHHHHHHCTT--SCEEEECCHHH-HHHHCH-----HHHHHHH----HHTTCCEEECTTCCHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHhhcCC--CCEEEEecCcH-HHHhhH-----HHHHHHH----HHcCCCEEEECCCCHHHHHHHHHHHHHcCCcE
Confidence 88999988 5 69999999996 888888 4888875 4566899999983 23333444444433
Q ss_pred chhhhhhHhhccCCCCCCcccHHHHHHHhh-h-ccccEEEecCCCCCCC-CCH-HHHHHHHhcCCCCEEEecCC-ChHhH
Q psy9039 154 VLVFTDIKKKHSSHAITADVDITETAKAAS-F-FLSDGLIITGNATGDP-ADV-SQLMSVKNAVDLPILIGSGV-TSDNV 228 (251)
Q Consensus 154 i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~-~-~~~D~v~VTG~~~g~~-~~~-~~l~~vr~~~~~PV~vG~GI-~~~~v 228 (251)
+.++ .| .++++++.++++.+. | |.++..++||.+++.+ .+. +.++++|+.+++||++|||| |++++
T Consensus 151 i~l~--------~p-~t~~~rl~~ia~~a~gfiy~vs~~g~TG~~~~~~~~~~~~~v~~vr~~~~~pv~vG~GI~t~e~~ 221 (262)
T 2ekc_A 151 VPLG--------AP-TSTRKRIKLICEAADEMTYFVSVTGTTGAREKLPYERIKKKVEEYRELCDKPVVVGFGVSKKEHA 221 (262)
T ss_dssp CCEE--------CT-TCCHHHHHHHHHHCSSCEEEESSCC---------CHHHHHHHHHHHHHCCSCEEEESSCCSHHHH
T ss_pred EEEe--------CC-CCCHHHHHHHHHhCCCCEEEEecCCccCCCCCcCcccHHHHHHHHHhhcCCCEEEeCCCCCHHHH
Confidence 3332 12 245578889988887 5 5667778999987765 444 78999999999999999999 59999
Q ss_pred HHhhc-CCEEEEeceEeec
Q psy9039 229 EHYMT-ADALIIGSHFKQG 246 (251)
Q Consensus 229 ~~~~~-ADGvIVGS~~~~~ 246 (251)
+++.. |||+||||+|++.
T Consensus 222 ~~~~~gADgvIVGSai~~~ 240 (262)
T 2ekc_A 222 REIGSFADGVVVGSALVKL 240 (262)
T ss_dssp HHHHTTSSEEEECHHHHHH
T ss_pred HHHHcCCCEEEECHHHHhh
Confidence 99777 9999999999875
|
| >1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ... | Back alignment and structure |
|---|
Probab=99.96 E-value=4.6e-30 Score=227.76 Aligned_cols=198 Identities=18% Similarity=0.245 Sum_probs=154.3
Q ss_pred ecccccccCCCCCCCcchHHHHHHHHHhhCCCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHH-----------
Q psy9039 13 HDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRL----------- 81 (251)
Q Consensus 13 ~~~p~~~~~pG~P~~~~~~~~i~~~a~~~a~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~----------- 81 (251)
-++||+++ |||+++.+.+.+ +.|+++|+ |+|++ |+||+||.+|||.+|+++.+.
T Consensus 18 ~~i~~i~~--gdp~~~~~~~~~--------~~l~~~Ga-D~iei----g~P~sdp~~DG~~i~~a~~~al~~G~~~~~~~ 82 (268)
T 1qop_A 18 AFVPFVTL--GDPGIEQSLKII--------DTLIDAGA-DALEL----GVPFSDPLADGPTIQNANLRAFAAGVTPAQCF 82 (268)
T ss_dssp EEEEEEET--TSSCHHHHHHHH--------HHHHHTTC-SSEEE----ECCCSCCTTCCHHHHHHHHHHHHTTCCHHHHH
T ss_pred eEEEEeeC--CCCCHHHHHHHH--------HHHHHCCC-CEEEE----CCCCCCccCCCHHHHHHHHHHHHcCCCHHHHH
Confidence 47899988 999998887777 88999999 99975 999999999999999988765
Q ss_pred --HHHHHHh-CCCCccEEEEEeeCChHHHHHHHHHcCccceecccccccccCCCceeecCc-----chhHHHHHhcCCCc
Q psy9039 82 --CAEIRKV-LPPSVPVGVQILSGCNKAALATAQAAGLDFIRAESFVFGHMADEGLMNAQA-----GPLLRYRKQIGADN 153 (251)
Q Consensus 82 --i~~vr~~-~~~~~P~Gvn~~~N~~~~~~~ia~a~g~~Fir~~~~~~~~~~~~Gli~~da-----~e~~~~r~~l~~~~ 153 (251)
++++|+. ++ +|+++|.|+|+ +++++. .+|++.+ ..+|.+|++.+|. .++.+..++.+.+.
T Consensus 83 ~~v~~ir~~~~~--~Pv~lm~y~n~-v~~~g~-----~~~~~~~----~~aGadgii~~d~~~e~~~~~~~~~~~~g~~~ 150 (268)
T 1qop_A 83 EMLAIIREKHPT--IPIGLLMYANL-VFNNGI-----DAFYARC----EQVGVDSVLVADVPVEESAPFRQAALRHNIAP 150 (268)
T ss_dssp HHHHHHHHHCSS--SCEEEEECHHH-HHTTCH-----HHHHHHH----HHHTCCEEEETTCCGGGCHHHHHHHHHTTCEE
T ss_pred HHHHHHHhcCCC--CCEEEEEcccH-HHHhhH-----HHHHHHH----HHcCCCEEEEcCCCHHHHHHHHHHHHHcCCcE
Confidence 7899998 67 79999999996 777776 4787764 4456789999982 23344444444433
Q ss_pred chhhhhhHhhccCCCCCCcccHHHHHHHhh-h-ccccEEEecCCCCCCCCC-HHHHHHHHhcCCCCEEEecCCC-hHhHH
Q psy9039 154 VLVFTDIKKKHSSHAITADVDITETAKAAS-F-FLSDGLIITGNATGDPAD-VSQLMSVKNAVDLPILIGSGVT-SDNVE 229 (251)
Q Consensus 154 i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~-~-~~~D~v~VTG~~~g~~~~-~~~l~~vr~~~~~PV~vG~GI~-~~~v~ 229 (251)
+.++ .| .++.++++++++.+. | |.++..++||.++...++ .++++++|+.+++||++||||+ +++++
T Consensus 151 i~l~--------~p-~t~~~~i~~i~~~~~g~v~~~s~~G~tG~~~~~~~~~~~~i~~lr~~~~~pi~vggGI~t~e~~~ 221 (268)
T 1qop_A 151 IFIC--------PP-NADDDLLRQVASYGRGYTYLLSRSGVTGAENRGALPLHHLIEKLKEYHAAPALQGFGISSPEQVS 221 (268)
T ss_dssp ECEE--------CT-TCCHHHHHHHHHHCCSCEEEESSSSCCCSSSCC--CCHHHHHHHHHTTCCCEEEESSCCSHHHHH
T ss_pred EEEE--------CC-CCCHHHHHHHHhhCCCcEEEEecCCcCCCccCCCchHHHHHHHHHhccCCcEEEECCCCCHHHHH
Confidence 3332 12 245578888888877 5 555555789998776554 5899999999999999999995 99999
Q ss_pred H-hhc-CCEEEEeceEeec
Q psy9039 230 H-YMT-ADALIIGSHFKQG 246 (251)
Q Consensus 230 ~-~~~-ADGvIVGS~~~~~ 246 (251)
+ +.. |||+||||+|++.
T Consensus 222 ~~~~agAD~vVVGSai~~~ 240 (268)
T 1qop_A 222 AAVRAGAAGAISGSAIVKI 240 (268)
T ss_dssp HHHHTTCSEEEECHHHHHH
T ss_pred HHHHcCCCEEEEChHHhhh
Confidence 9 456 9999999999764
|
| >1rd5_A Tryptophan synthase alpha chain, chloroplast; hydroxamic acid, diboa, dimboa, indole, indole-glycerol-PHOS lyase; 2.02A {Zea mays} SCOP: c.1.2.4 PDB: 1tjr_A | Back alignment and structure |
|---|
Probab=99.91 E-value=3.1e-25 Score=195.52 Aligned_cols=192 Identities=23% Similarity=0.292 Sum_probs=139.2
Q ss_pred ecccccccCCCCCCCcchHHHHHHHHHhhCCCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHH-----------
Q psy9039 13 HDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRL----------- 81 (251)
Q Consensus 13 ~~~p~~~~~pG~P~~~~~~~~i~~~a~~~a~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~----------- 81 (251)
-++||+++ |+|+.+.+.+.+ +.|+++|+ |.|++ |+||++|++|||.+|+++.+.
T Consensus 19 ~~~~~i~~--g~~~~~~~~~~~--------~~l~~~Ga-d~iel----g~p~~dp~~dg~~i~~a~~~al~~g~~~~~~~ 83 (262)
T 1rd5_A 19 AFIPYITA--GDPDLATTAEAL--------RLLDGCGA-DVIEL----GVPCSDPYIDGPIIQASVARALASGTTMDAVL 83 (262)
T ss_dssp EEEEEEET--TSSCHHHHHHHH--------HHHHHTTC-SSEEE----ECCCSCCTTSCHHHHHHHHHHHTTTCCHHHHH
T ss_pred eEEEEeeC--CCCCHHHHHHHH--------HHHHHcCC-CEEEE----CCCCCCcccCCHHHHHHHHHHHHcCCCHHHHH
Confidence 47899988 999886666666 88899999 99975 999999999999999888864
Q ss_pred --HHHHHHhCCCCccEEEEEeeCChHHHHHH--HHHcCccceecccccccccCCCceeecC-----cchhHHHHHhcCCC
Q psy9039 82 --CAEIRKVLPPSVPVGVQILSGCNKAALAT--AQAAGLDFIRAESFVFGHMADEGLMNAQ-----AGPLLRYRKQIGAD 152 (251)
Q Consensus 82 --i~~vr~~~~~~~P~Gvn~~~N~~~~~~~i--a~a~g~~Fir~~~~~~~~~~~~Gli~~d-----a~e~~~~r~~l~~~ 152 (251)
++++|+.++ +|+.+|.|+|+ ...+++ +.+ +|.+|++.+| ..++.+..++.|.+
T Consensus 84 ~~i~~ir~~~~--~Pv~~m~~~~~-~~~~~~~~a~~---------------aGadgv~v~d~~~~~~~~~~~~~~~~g~~ 145 (262)
T 1rd5_A 84 EMLREVTPELS--CPVVLLSYYKP-IMFRSLAKMKE---------------AGVHGLIVPDLPYVAAHSLWSEAKNNNLE 145 (262)
T ss_dssp HHHHHHGGGCS--SCEEEECCSHH-HHSCCTHHHHH---------------TTCCEEECTTCBTTTHHHHHHHHHHTTCE
T ss_pred HHHHHHHhcCC--CCEEEEecCcH-HHHHHHHHHHH---------------cCCCEEEEcCCChhhHHHHHHHHHHcCCc
Confidence 688888877 79999998885 443333 223 3445666665 23444555555554
Q ss_pred cchhhhhhHhhccCCCCCCcccHHHHHHHhh-h-ccccEEEecCCCCCCCCC-HHHHHHHHhcCCCCEEEecCCC-hHhH
Q psy9039 153 NVLVFTDIKKKHSSHAITADVDITETAKAAS-F-FLSDGLIITGNATGDPAD-VSQLMSVKNAVDLPILIGSGVT-SDNV 228 (251)
Q Consensus 153 ~i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~-~-~~~D~v~VTG~~~g~~~~-~~~l~~vr~~~~~PV~vG~GI~-~~~v 228 (251)
.+.+++ | .++.++++.++..+. | |..+..++||.+++..+. .++++++|+.+++||++||||+ ++|+
T Consensus 146 ~i~~~a--------~-~t~~e~~~~~~~~~~g~v~~~s~~G~tG~~~~~~~~~~~~i~~v~~~~~~pI~vgGGI~~~e~~ 216 (262)
T 1rd5_A 146 LVLLTT--------P-AIPEDRMKEITKASEGFVYLVSVNGVTGPRANVNPRVESLIQEVKKVTNKPVAVGFGISKPEHV 216 (262)
T ss_dssp ECEEEC--------T-TSCHHHHHHHHHHCCSCEEEECSSCCBCTTSCBCTHHHHHHHHHHHHCSSCEEEESCCCSHHHH
T ss_pred eEEEEC--------C-CCCHHHHHHHHhcCCCeEEEecCCCCCCCCcCCCchHHHHHHHHHhhcCCeEEEECCcCCHHHH
Confidence 333331 2 134456666655554 4 233334568877665443 4689999999999999999996 9999
Q ss_pred HHhhc--CCEEEEeceEeec
Q psy9039 229 EHYMT--ADALIIGSHFKQG 246 (251)
Q Consensus 229 ~~~~~--ADGvIVGS~~~~~ 246 (251)
.+++. |||++|||+|++.
T Consensus 217 ~~~~~~GAdgvvVGSai~~~ 236 (262)
T 1rd5_A 217 KQIAQWGADGVIIGSAMVRQ 236 (262)
T ss_dssp HHHHHTTCSEEEECHHHHHH
T ss_pred HHHHHcCCCEEEEChHHHhH
Confidence 99986 9999999998763
|
| >1geq_A Tryptophan synthase alpha-subunit; hyperthermophIle, pyrococ furiosus, X-RAY analysis, stability, calorimetry, lyase; 2.00A {Pyrococcus furiosus} SCOP: c.1.2.4 PDB: 1wdw_A* 2dzu_A 2dzp_A 2e09_A 2dzw_A 2dzs_A 2dzv_A 2dzt_A 2dzx_A | Back alignment and structure |
|---|
Probab=99.84 E-value=8.8e-22 Score=171.40 Aligned_cols=196 Identities=19% Similarity=0.245 Sum_probs=132.0
Q ss_pred ecccccccCCCCCCCcchHHHHHHHHHhhCCCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHH-------------
Q psy9039 13 HDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMT------------- 79 (251)
Q Consensus 13 ~~~p~~~~~pG~P~~~~~~~~i~~~a~~~a~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~------------- 79 (251)
.++||+++ |||+.+.+.+.+ +.++++ + |.|+ +++|||+|..||+.+++++.
T Consensus 6 ~~~~~i~~--~~~~~~~~~~~a--------~~~~~~-a-d~ie----l~~p~sdp~~DG~~~~~~~~~al~~g~~~~~~~ 69 (248)
T 1geq_A 6 SLIPYLTA--GDPDKQSTLNFL--------LALDEY-A-GAIE----LGIPFSDPIADGKTIQESHYRALKNGFKLREAF 69 (248)
T ss_dssp EEEEEEET--TSSCHHHHHHHH--------HHHGGG-B-SCEE----EECCCSCCTTSCHHHHHHHHHHHHTTCCHHHHH
T ss_pred cEEEEEeC--CCCCHHHHHHHH--------HHHHHc-C-CEEE----ECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHH
Confidence 36899999 999887666766 778888 9 9997 59999999999999997764
Q ss_pred HHHHHHHHhCCCCccEEEEEeeCChH------HHHHHHHHcCccceecccccccccCCCceeecCcchhHHHHHhcCCCc
Q psy9039 80 RLCAEIRKVLPPSVPVGVQILSGCNK------AALATAQAAGLDFIRAESFVFGHMADEGLMNAQAGPLLRYRKQIGADN 153 (251)
Q Consensus 80 ~~i~~vr~~~~~~~P~Gvn~~~N~~~------~~~~ia~a~g~~Fir~~~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~ 153 (251)
.+++++|+.++ +|+.++.|.|+ + .....+...|++++.... +-..+..++.++.++++...
T Consensus 70 ~~i~~i~~~~~--~pv~~~~~~~~-~~~~~~~~~~~~~~~~Gad~v~~~~----------~~~~~~~~~~~~~~~~g~~~ 136 (248)
T 1geq_A 70 WIVKEFRRHSS--TPIVLMTYYNP-IYRAGVRNFLAEAKASGVDGILVVD----------LPVFHAKEFTEIAREEGIKT 136 (248)
T ss_dssp HHHHHHHTTCC--CCEEEEECHHH-HHHHCHHHHHHHHHHHTCCEEEETT----------CCGGGHHHHHHHHHHHTCEE
T ss_pred HHHHHHHhhCC--CCEEEEeccch-hhhcCHHHHHHHHHHCCCCEEEECC----------CChhhHHHHHHHHHHhCCCe
Confidence 47899998887 79999998775 3 334455556666666421 01123456777777777533
Q ss_pred chhhhhhHhhccCCCCCCcccHHHHHHHhh-h-ccccEEEecCCCCCCCC-CHHHHHHHHhcCCCCEEEecCCCh-HhHH
Q psy9039 154 VLVFTDIKKKHSSHAITADVDITETAKAAS-F-FLSDGLIITGNATGDPA-DVSQLMSVKNAVDLPILIGSGVTS-DNVE 229 (251)
Q Consensus 154 i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~-~-~~~D~v~VTG~~~g~~~-~~~~l~~vr~~~~~PV~vG~GI~~-~~v~ 229 (251)
+..+ . + .++.+.++.+...+. + +..+.-+.||.+++..+ ..+.++++|+.+++||++||||+. +|+.
T Consensus 137 ~~~i---~-----~-~t~~e~~~~~~~~~d~~i~~~~~~G~~g~~~~~~~~~~~~i~~l~~~~~~pi~~~GGI~~~e~i~ 207 (248)
T 1geq_A 137 VFLA---A-----P-NTPDERLKVIDDMTTGFVYLVSLYGTTGAREEIPKTAYDLLRRAKRICRNKVAVGFGVSKREHVV 207 (248)
T ss_dssp EEEE---C-----T-TCCHHHHHHHHHHCSSEEEEECCC-------CCCHHHHHHHHHHHHHCSSCEEEESCCCSHHHHH
T ss_pred EEEE---C-----C-CCHHHHHHHHHhcCCCeEEEEECCccCCCCCCCChhHHHHHHHHHhhcCCCEEEEeecCCHHHHH
Confidence 3322 1 1 133344444433332 2 22222334555544333 257899999988999999999964 9999
Q ss_pred Hhhc--CCEEEEeceEeec
Q psy9039 230 HYMT--ADALIIGSHFKQG 246 (251)
Q Consensus 230 ~~~~--ADGvIVGS~~~~~ 246 (251)
+++. |||++|||+|.+.
T Consensus 208 ~~~~~Gad~vivGsai~~~ 226 (248)
T 1geq_A 208 SLLKEGANGVVVGSALVKI 226 (248)
T ss_dssp HHHHTTCSEEEECHHHHHH
T ss_pred HHHHcCCCEEEEcHHHHhh
Confidence 9975 9999999998753
|
| >2f6u_A GGGPS, (S)-3-O-geranylgeranylglyceryl phosphate synthase; non-canonical TIM-barrel, prenyltransferase, archaeal lipid synthesis, dimer; HET: CIT; 1.55A {Archaeoglobus fulgidus} SCOP: c.1.4.1 PDB: 2f6x_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=6.2e-19 Score=153.34 Aligned_cols=180 Identities=12% Similarity=0.166 Sum_probs=128.5
Q ss_pred cccccccCCCCCCCcchHHHHHHHHHhhCCCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCc
Q psy9039 14 DVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSV 93 (251)
Q Consensus 14 ~~p~~~~~pG~P~~~~~~~~i~~~a~~~a~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~ 93 (251)
.--|+++ |||+.+.|.+.+ ++|+++|+ |+|+| |. |. .++...+-.+++++|+ ++ +
T Consensus 8 ~~~~it~--gDP~~~~t~~~~--------~~l~~~Ga-D~Iel----G~--S~-----g~t~~~~~~~v~~ir~-~~--~ 62 (234)
T 2f6u_A 8 KWRHITK--LDPDRTNTDEII--------KAVADSGT-DAVMI----SG--TQ-----NVTYEKARTLIEKVSQ-YG--L 62 (234)
T ss_dssp GCCEEEE--ECTTSCCCHHHH--------HHHHTTTC-SEEEE----CC--CT-----TCCHHHHHHHHHHHTT-SC--C
T ss_pred cceEEEe--eCCCccccHHHH--------HHHHHcCC-CEEEE----CC--CC-----CCCHHHHHHHHHHhcC-CC--C
Confidence 3457888 999999999988 88899999 99986 55 43 2456667788899998 66 7
Q ss_pred cEEEEEeeCChHHHHHHHHHcCccceecccccccccCCCceeecC-----cchhH-----HHH-------HhcC-----C
Q psy9039 94 PVGVQILSGCNKAALATAQAAGLDFIRAESFVFGHMADEGLMNAQ-----AGPLL-----RYR-------KQIG-----A 151 (251)
Q Consensus 94 P~Gvn~~~N~~~~~~~ia~a~g~~Fir~~~~~~~~~~~~Gli~~d-----a~e~~-----~~r-------~~l~-----~ 151 (251)
|+.+|.|+|.++ ..+.+|++.|| ..++. +.. ++.+ .
T Consensus 63 Pivl~~y~~n~i----------------------~~gvDg~iipdLp~ee~~~~~~g~~~~~~~~~~~~~~~~g~~~~~l 120 (234)
T 2f6u_A 63 PIVVEPSDPSNV----------------------VYDVDYLFVPTVLNSADGDWITGKHAQWVRMHYENLQKFTEIIESE 120 (234)
T ss_dssp CEEECCSSCCCC----------------------CCCSSEEEEEEETTBSBGGGTTHHHHHHHHTTGGGHHHHHHHHHST
T ss_pred CEEEecCCcchh----------------------hcCCCEEEEcccCCCCCHHHHhhhHHHHHHhhhhhHHHcCCcccce
Confidence 999999995312 24688999998 44444 333 4455 4
Q ss_pred Ccch----hhh----hhHhhccCCCCCCcccHHHHHHHhh-hc---cccEEEecCCCCCCCCCHHHHHHHHhcC-CCCEE
Q psy9039 152 DNVL----VFT----DIKKKHSSHAITADVDITETAKAAS-FF---LSDGLIITGNATGDPADVSQLMSVKNAV-DLPIL 218 (251)
Q Consensus 152 ~~i~----i~a----~v~~k~~~~~~~~~~~i~~~a~~a~-~~---~~D~v~VTG~~~g~~~~~~~l~~vr~~~-~~PV~ 218 (251)
+.|. +++ .++...+-+. ++++++..+++.+. +. .++... +| .....+.++++|+.+ ++|++
T Consensus 121 ~~I~~gYil~~P~~~~~rl~~g~~~-~~~e~~~~~a~~g~~~l~~~~Vyl~~-~G----~~~~~~~i~~i~~~~~~~Pv~ 194 (234)
T 2f6u_A 121 FIQIEGYIVLNPDSAVARVTKALCN-IDKELAASYALVGEKLFNLPIIYIEY-SG----TYGNPELVAEVKKVLDKARLF 194 (234)
T ss_dssp TEEEEEEEECCTTSHHHHHTTBCCC-CCHHHHHHHHHHHHHTTCCSEEEEEC-TT----SCCCHHHHHHHHHHCSSSEEE
T ss_pred eeeecceEEECCCCceEEeecCCCC-CCHHHHHHHHHhhhhhcCCCEEEEeC-CC----CcchHHHHHHHHHhCCCCCEE
Confidence 5555 221 0111112222 34466777777775 33 255444 54 355689999999999 99999
Q ss_pred EecCC-ChHhHHHhhc-CCEEEEeceEeec
Q psy9039 219 IGSGV-TSDNVEHYMT-ADALIIGSHFKQG 246 (251)
Q Consensus 219 vG~GI-~~~~v~~~~~-ADGvIVGS~~~~~ 246 (251)
+|||| |+++++++++ ||+|||||+++++
T Consensus 195 vGgGI~s~e~a~~~~~gAd~VIVGSa~v~~ 224 (234)
T 2f6u_A 195 YGGGIDSREKAREMLRYADTIIVGNVIYEK 224 (234)
T ss_dssp EESCCCSHHHHHHHHHHSSEEEECHHHHHH
T ss_pred EEecCCCHHHHHHHHhCCCEEEEChHHHhC
Confidence 99999 6999999998 9999999999875
|
| >1viz_A PCRB protein homolog; structural genomics, unknown function; 1.85A {Bacillus subtilis} SCOP: c.1.4.1 | Back alignment and structure |
|---|
Probab=99.76 E-value=2e-18 Score=150.76 Aligned_cols=182 Identities=15% Similarity=0.182 Sum_probs=126.1
Q ss_pred ecccccccCCCCCCCcchHHHHHHHHHhhCCCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCC
Q psy9039 13 HDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPS 92 (251)
Q Consensus 13 ~~~p~~~~~pG~P~~~~~~~~i~~~a~~~a~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~ 92 (251)
..--|+++ |||+.+.|.+.+ ++|+++|+ |+|++ |. |. | ++...+-..++++|+ ++
T Consensus 7 ~~~~~i~~--gDP~~~~t~~~~--------~~l~~~Ga-D~iel----G~--S~----G-vt~~~~~~~v~~ir~-~~-- 61 (240)
T 1viz_A 7 TEWKHVFK--LDPNKDLPDEQL--------EILCESGT-DAVII----GG--SD----G-VTEDNVLRMMSKVRR-FL-- 61 (240)
T ss_dssp GGCCEEEE--ECTTSCCCHHHH--------HHHHTSCC-SEEEE----CC-----------CHHHHHHHHHHHTT-SS--
T ss_pred CcceEEEe--eCCCccccHHHH--------HHHHHcCC-CEEEE----CC--CC----C-CCHHHHHHHHHHhhC-cC--
Confidence 34458888 999999999988 88999999 99986 55 32 3 445557778899998 66
Q ss_pred ccEEEEEeeCChHHHHHHHHHcCccceecccccccccCCCceeecC-----cchh-----HHHHHhcC-----CCcch--
Q psy9039 93 VPVGVQILSGCNKAALATAQAAGLDFIRAESFVFGHMADEGLMNAQ-----AGPL-----LRYRKQIG-----ADNVL-- 155 (251)
Q Consensus 93 ~P~Gvn~~~N~~~~~~~ia~a~g~~Fir~~~~~~~~~~~~Gli~~d-----a~e~-----~~~r~~l~-----~~~i~-- 155 (251)
+|+.+|.|+|.+ | ..+.+|+|+|| ..++ ....++++ .+.+.
T Consensus 62 ~Pivlm~y~~n~-------------i---------~~G~dg~iiPdLp~ee~~~~~~g~~~~a~~~~g~~~~~l~~i~~g 119 (240)
T 1viz_A 62 VPCVLEVSAIEA-------------I---------VPGFDLYFIPSVLNSKNADWIVGMHQKAMKEYGELMSMEEIVAEG 119 (240)
T ss_dssp SCEEEECSCGGG-------------C---------CSCCSEEEEEEETTBSSGGGTTHHHHHHHHHCHHHHHHSCEEEEE
T ss_pred CCEEEecCcccc-------------c---------cCCCCEEEEcccCcccChhhhcchhHHHHHHcCCCCcceeeeecc
Confidence 799999999531 2 24688999998 3444 46667766 55555
Q ss_pred --hhhh---h-HhhccCCCCCCcccHHHHHHHhhh---ccccEEEecCCCCCCCCCHHHHHHHHhcC-CCCEEEecCC-C
Q psy9039 156 --VFTD---I-KKKHSSHAITADVDITETAKAASF---FLSDGLIITGNATGDPADVSQLMSVKNAV-DLPILIGSGV-T 224 (251)
Q Consensus 156 --i~a~---v-~~k~~~~~~~~~~~i~~~a~~a~~---~~~D~v~VTG~~~g~~~~~~~l~~vr~~~-~~PV~vG~GI-~ 224 (251)
+++- + ....+-. .++++++...++.+++ ..++... +|. ....++++++|+.+ ++|+++|||| |
T Consensus 120 y~l~~P~~~~~rl~~~d~-~~~~~~~~~~a~~g~~~~~~~VYl~s-~G~----~~~~~~i~~i~~~~~~~Pv~vGgGI~t 193 (240)
T 1viz_A 120 YCIANPDCKAAALTEADA-DLNMDDIVAYARVSELLQLPIFYLEY-SGV----LGDIEAVKKTKAVLETSTLFYGGGIKD 193 (240)
T ss_dssp EEECCTTSHHHHHTTBCC-CCCHHHHHHHHHHHHHTTCSEEEEEC-TTS----CCCHHHHHHHHHTCSSSEEEEESSCCS
T ss_pred cEEECCCCceEEeeccCC-CCCHHHHHHHHHhCcccCCCEEEEeC-CCc----cChHHHHHHHHHhcCCCCEEEEeccCC
Confidence 3310 0 0000000 0123456666655531 2344443 443 55789999999999 9999999999 6
Q ss_pred hHhHHHhhc-CCEEEEeceEeecC
Q psy9039 225 SDNVEHYMT-ADALIIGSHFKQGG 247 (251)
Q Consensus 225 ~~~v~~~~~-ADGvIVGS~~~~~g 247 (251)
+++++++++ ||+|||||+++++-
T Consensus 194 ~e~a~~~~~gAd~VIVGSa~v~~~ 217 (240)
T 1viz_A 194 AETAKQYAEHADVIVVGNAVYEDF 217 (240)
T ss_dssp HHHHHHHHTTCSEEEECTHHHHCH
T ss_pred HHHHHHHHhCCCEEEEChHHHhCH
Confidence 999999998 99999999998763
|
| >3w01_A Heptaprenylglyceryl phosphate synthase; biosynthesis, prenyltransferases, enzyme catalysis, transfer; HET: PGE; 1.54A {Staphylococcus aureus} PDB: 3w02_A | Back alignment and structure |
|---|
Probab=99.59 E-value=4.8e-15 Score=128.64 Aligned_cols=179 Identities=16% Similarity=0.261 Sum_probs=117.2
Q ss_pred cccccCCCCCCCcchHHHHHHHHHhhCCCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccE
Q psy9039 16 PYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPV 95 (251)
Q Consensus 16 p~~~~~pG~P~~~~~~~~i~~~a~~~a~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~ 95 (251)
-|++. +||+...+.+.+ +++.++|. |+|+| + . |+. ++.+.+.++++++|+ ++ +|+
T Consensus 13 ~h~~~--~DPdk~~~~~~l--------~~~~~~Gt-DaI~v---G-g--s~g-----vt~~~~~~~v~~ik~-~~--~Pi 67 (235)
T 3w01_A 13 RHIFK--LDPAKHISDDDL--------DAICMSQT-DAIMI---G-G--TDD-----VTEDNVIHLMSKIRR-YP--LPL 67 (235)
T ss_dssp CEEEE--ECTTSCCCHHHH--------HHHHTSSC-SEEEE---C-C--SSC-----CCHHHHHHHHHHHTT-SC--SCE
T ss_pred eEEEe--ECCCCcCCHHHH--------HHHHHcCC-CEEEE---C-C--cCC-----cCHHHHHHHHHHhcC-cC--CCE
Confidence 45666 899998888777 34679999 99987 3 3 322 366778899999998 77 799
Q ss_pred EEEEeeCChHHHHHHHHHcCccceecccccccccCCCceeecC-----cchh-----HHHHHhcCC-----Ccch----h
Q psy9039 96 GVQILSGCNKAALATAQAAGLDFIRAESFVFGHMADEGLMNAQ-----AGPL-----LRYRKQIGA-----DNVL----V 156 (251)
Q Consensus 96 Gvn~~~N~~~~~~~ia~a~g~~Fir~~~~~~~~~~~~Gli~~d-----a~e~-----~~~r~~l~~-----~~i~----i 156 (251)
.++.| |+ ..|.+ +.+|++.|+ ..++ .+..+++|. +.+. +
T Consensus 68 il~p~-~~------------~~~~~---------gaD~il~pslln~~~~~~i~g~~~~a~~~~gl~~~~~e~i~~gYiv 125 (235)
T 3w01_A 68 VLEIS-NI------------ESVMP---------GFDFYFVPTVLNSTDVAFHNGTLLEALKTYGHSIDFEEVIFEGYVV 125 (235)
T ss_dssp EEECC-CS------------TTCCT---------TCSEEEEEEETTBSSGGGTTHHHHHHHHHHGGGCCGGGEEEEEEEE
T ss_pred EEecC-CH------------HHhhc---------CCCEEEEccccCCCCcchhhhHHHHHHHHcCCCCcccceeeeeEEE
Confidence 99988 54 23422 366777665 3333 234556665 4444 2
Q ss_pred hh---hhHhhccCCCCCCcccHHHHHHHh---h-hccccEEEecCCCCCCCCCHHHHHHHHhcC-CCCEEEecCC-ChHh
Q psy9039 157 FT---DIKKKHSSHAITADVDITETAKAA---S-FFLSDGLIITGNATGDPADVSQLMSVKNAV-DLPILIGSGV-TSDN 227 (251)
Q Consensus 157 ~a---~v~~k~~~~~~~~~~~i~~~a~~a---~-~~~~D~v~VTG~~~g~~~~~~~l~~vr~~~-~~PV~vG~GI-~~~~ 227 (251)
+. .+..-.+.. ...++++++..| . +++-..+-+-. +|...+.+.++++|+.+ ++|+++|||| ++++
T Consensus 126 v~p~s~v~~v~~a~---~~~~~e~iaa~A~~a~~~~g~~~vY~e~--sG~~g~~~~v~~ir~~~~~~pv~vGfGI~~~e~ 200 (235)
T 3w01_A 126 CNADSKVAKHTKAN---TDLTTEDLEAYAQMVNHMYRLPVMYIEY--SGIYGDVSKVQAVSEHLTETQLFYGGGISSEQQ 200 (235)
T ss_dssp CCSSSHHHHHTTBC---CCCCHHHHHHHHHHHHHTTCCSEEEEEC--TTSCCCHHHHHHHHTTCSSSEEEEESCCCSHHH
T ss_pred ECCCCChhhcccCC---cCCCHHHHHHHHHHHHHHcCCCEEEEec--CCCcCCHHHHHHHHHhcCCCCEEEECCcCCHHH
Confidence 21 000000111 112466666553 2 33333332211 12233689999999999 9999999999 7999
Q ss_pred HHHhhc-CCEEEEeceEeec
Q psy9039 228 VEHYMT-ADALIIGSHFKQG 246 (251)
Q Consensus 228 v~~~~~-ADGvIVGS~~~~~ 246 (251)
++++.. |||+||||+|.+|
T Consensus 201 a~~~~~gAD~VVVGSai~~~ 220 (235)
T 3w01_A 201 ATEMAAIADTIIVGDIIYKD 220 (235)
T ss_dssp HHHHHTTSSEEEECTHHHHC
T ss_pred HHHHHcCCCEEEECCceecC
Confidence 999998 9999999999886
|
| >3vzx_A Heptaprenylglyceryl phosphate synthase; biosynthesis, prenyltransferases, enzyme catalysis, transfer; 1.54A {Bacillus subtilis} PDB: 3vzy_A* 3vzz_A* 3w00_A* 1viz_A | Back alignment and structure |
|---|
Probab=99.57 E-value=5.6e-15 Score=127.83 Aligned_cols=182 Identities=15% Similarity=0.218 Sum_probs=115.9
Q ss_pred cccccCCCCCCCcchHHHHHHHHHhhCCCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccE
Q psy9039 16 PYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPV 95 (251)
Q Consensus 16 p~~~~~pG~P~~~~~~~~i~~~a~~~a~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~ 95 (251)
-|++. +||+...+.+.+ +++.++|. |+|+| +| |+. ++...+.++++++|+ ++ +|+
T Consensus 8 ~h~~~--iDPdk~~~~~~~--------~~~~~~Gt-D~i~v---GG---s~g-----vt~~~~~~~v~~ik~-~~--~Pv 62 (228)
T 3vzx_A 8 KHVFK--LDPNKDLPDEQL--------EILCESGT-DAVII---GG---SDG-----VTEDNVLRMMSKVRR-FL--VPC 62 (228)
T ss_dssp CEEEE--ECTTSCCCTTHH--------HHHHTSSC-SEEEE---CC---CSC-----CCHHHHHHHHHHHTT-SS--SCE
T ss_pred eEEEe--ECCCCCCCHHHH--------HHHHHcCC-CEEEE---CC---cCC-----CCHHHHHHHHHHhhc-cC--CCE
Confidence 45667 899998765555 33579999 99997 33 332 245678889999998 77 799
Q ss_pred EEEEeeCChHHHHHHHHHcCccceecccccccccCCCceeecC-----cchhH-----HHHHhcCC-----Ccch----h
Q psy9039 96 GVQILSGCNKAALATAQAAGLDFIRAESFVFGHMADEGLMNAQ-----AGPLL-----RYRKQIGA-----DNVL----V 156 (251)
Q Consensus 96 Gvn~~~N~~~~~~~ia~a~g~~Fir~~~~~~~~~~~~Gli~~d-----a~e~~-----~~r~~l~~-----~~i~----i 156 (251)
.++.+.+. .|. .+.+|++.|+ ..+++ +..+++|. +-+. +
T Consensus 63 vlfp~~~~-------------~v~---------~gaD~~l~pslln~~~~~~i~g~~~~a~~~~g~~~~~~e~i~~gYiv 120 (228)
T 3vzx_A 63 VLEVSAIE-------------AIV---------PGFDLYFIPSVLNSKNADWIVGMHQKAMKEYGELMSMEEIVAEGYCI 120 (228)
T ss_dssp EEECSCGG-------------GCC---------SCCSEEEEEEETTBSSGGGTTHHHHHHHHHHHHHHHHSCEEEEEEEE
T ss_pred EEeCCCHH-------------Hcc---------ccCCEEEEeeecCCCCcchhhhHHHHHHHHcCCCCcccceeeeEEEE
Confidence 99987642 232 1355555554 33443 44455553 3333 1
Q ss_pred hh---hhHhhccCCCCCCcccHHHHHHHhhhccccEEEecCCCCCCCCCHHHHHHHHhcC-CCCEEEecCC-ChHhHHHh
Q psy9039 157 FT---DIKKKHSSHAITADVDITETAKAASFFLSDGLIITGNATGDPADVSQLMSVKNAV-DLPILIGSGV-TSDNVEHY 231 (251)
Q Consensus 157 ~a---~v~~k~~~~~~~~~~~i~~~a~~a~~~~~D~v~VTG~~~g~~~~~~~l~~vr~~~-~~PV~vG~GI-~~~~v~~~ 231 (251)
+. .+..-.+.....+.+++...|..+++++...+-+-+ +|...+.+.++++|+.+ ++||++|||| |+++++++
T Consensus 121 v~p~s~~~~~~~a~~~~~~e~~~~~a~~a~~~g~~~VYld~--sG~~~~~~~i~~i~~~~~~~Pv~vGGGI~t~e~a~~~ 198 (228)
T 3vzx_A 121 ANPDCKAAALTEADADLNMDDIVAYARVSELLQLPIFYLEY--SGVLGDIEAVKKTKAVLETSTLFYGGGIKDAETAKQY 198 (228)
T ss_dssp CCSSSHHHHHTTBCCCCCHHHHHHHHHHHHHTTCSEEEEEC--TTSCCCHHHHHHHHHHCSSSEEEEESSCCSHHHHHHH
T ss_pred ECCCCcceeeecccCCCCHHHHHHHHHHHHHcCCCEEEecC--CCCcCCHHHHHHHHHhcCCCCEEEeCCCCCHHHHHHH
Confidence 21 011000111111234555555666644444443333 12233689999999999 8999999999 79999999
Q ss_pred hc-CCEEEEeceEeec
Q psy9039 232 MT-ADALIIGSHFKQG 246 (251)
Q Consensus 232 ~~-ADGvIVGS~~~~~ 246 (251)
+. ||++||||++.++
T Consensus 199 ~~gAD~VVVGSa~v~~ 214 (228)
T 3vzx_A 199 AEHADVIVVGNAVYED 214 (228)
T ss_dssp HTTCSEEEECTHHHHC
T ss_pred HhCCCEEEEChHHhcC
Confidence 98 9999999999876
|
| >1tqj_A Ribulose-phosphate 3-epimerase; beta-alpha barrel epimerase, isomerase; 1.60A {Synechocystis SP} SCOP: c.1.2.2 | Back alignment and structure |
|---|
Probab=99.44 E-value=3.3e-14 Score=123.08 Aligned_cols=190 Identities=16% Similarity=0.174 Sum_probs=118.2
Q ss_pred eecccccccCCCCCCCcchHHHHHHHHHhhCCCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCC
Q psy9039 12 MHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPP 91 (251)
Q Consensus 12 ~~~~p~~~~~pG~P~~~~~~~~i~~~a~~~a~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~ 91 (251)
|...||+.+ +| +....+.+ +.+.++|+ |.+.+--+ |-+|......|+ .+++++|+.++
T Consensus 5 ~~i~psila--~D--~~~l~~~i--------~~~~~~Ga-d~ihldi~-DG~fvp~~~~g~-------~~v~~lr~~~~- 62 (230)
T 1tqj_A 5 IVVAPSILS--AD--FSRLGEEI--------KAVDEAGA-DWIHVDVM-DGRFVPNITIGP-------LIVDAIRPLTK- 62 (230)
T ss_dssp CEEEEBGGG--SC--GGGHHHHH--------HHHHHTTC-SEEEEEEE-BSSSSSCBCBCH-------HHHHHHGGGCC-
T ss_pred cEEEEEeee--cC--HhHHHHHH--------HHHHHcCC-CEEEEEEE-ecCCCcchhhhH-------HHHHHHHhhcC-
Confidence 457899999 86 44445555 66678999 99876543 445654444554 56788888876
Q ss_pred CccEEEEEeeCChHHHHHHHHHcCccceecccccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHhhccCCCCCC
Q psy9039 92 SVPVGVQILSGCNKAALATAQAAGLDFIRAESFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSSHAITA 171 (251)
Q Consensus 92 ~~P~Gvn~~~N~~~~~~~ia~a~g~~Fir~~~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~k~~~~~~~~ 171 (251)
.|+.+-++.|++..-...+...|++.+....... .. ....+..+..++.|. ++.-.+++. |+
T Consensus 63 -~~~~vhlmv~dp~~~i~~~~~aGadgv~vh~e~~--~~------~~~~~~~~~i~~~g~---~~gv~~~p~------t~ 124 (230)
T 1tqj_A 63 -KTLDVHLMIVEPEKYVEDFAKAGADIISVHVEHN--AS------PHLHRTLCQIRELGK---KAGAVLNPS------TP 124 (230)
T ss_dssp -SEEEEEEESSSGGGTHHHHHHHTCSEEEEECSTT--TC------TTHHHHHHHHHHTTC---EEEEEECTT------CC
T ss_pred -CcEEEEEEccCHHHHHHHHHHcCCCEEEECcccc--cc------hhHHHHHHHHHHcCC---cEEEEEeCC------Cc
Confidence 6999777777754445666677777776431100 00 123344555555554 222112211 33
Q ss_pred cccHHHHHHHhhhccccEEEe------cCCCCCCCCCHHHHHHHHhcC-----CCCEEEecCCChHhHHHhhc--CCEEE
Q psy9039 172 DVDITETAKAASFFLSDGLII------TGNATGDPADVSQLMSVKNAV-----DLPILIGSGVTSDNVEHYMT--ADALI 238 (251)
Q Consensus 172 ~~~i~~~a~~a~~~~~D~v~V------TG~~~g~~~~~~~l~~vr~~~-----~~PV~vG~GI~~~~v~~~~~--ADGvI 238 (251)
.++++.+. .++|.+.+ +|...-.+...++++++|+.. ++||.++|||+.+|+.++.+ ||+++
T Consensus 125 ~e~~~~~~-----~~~D~v~~msv~pg~ggq~~~~~~~~~i~~lr~~~~~~~~~~~I~v~GGI~~~~~~~~~~aGad~vv 199 (230)
T 1tqj_A 125 LDFLEYVL-----PVCDLILIMSVNPGFGGQSFIPEVLPKIRALRQMCDERGLDPWIEVDGGLKPNNTWQVLEAGANAIV 199 (230)
T ss_dssp GGGGTTTG-----GGCSEEEEESSCC----CCCCGGGHHHHHHHHHHHHHHTCCCEEEEESSCCTTTTHHHHHHTCCEEE
T ss_pred HHHHHHHH-----hcCCEEEEEEeccccCCccCcHHHHHHHHHHHHHHHhcCCCCcEEEECCcCHHHHHHHHHcCCCEEE
Confidence 33433322 25666533 222111223468899999887 89999999999999999986 99999
Q ss_pred EeceEeec
Q psy9039 239 IGSHFKQG 246 (251)
Q Consensus 239 VGS~~~~~ 246 (251)
|||++.+.
T Consensus 200 vGSai~~a 207 (230)
T 1tqj_A 200 AGSAVFNA 207 (230)
T ss_dssp ESHHHHTS
T ss_pred ECHHHHCC
Confidence 99998764
|
| >1rpx_A Protein (ribulose-phosphate 3-epimerase); chloroplast, calvin cycle, oxidative pentose PH pathway; 2.30A {Solanum tuberosum} SCOP: c.1.2.2 | Back alignment and structure |
|---|
Probab=99.39 E-value=1.5e-13 Score=118.08 Aligned_cols=191 Identities=16% Similarity=0.169 Sum_probs=117.3
Q ss_pred eeecccccccCCCCCCCcchHHHHHHHHHhhCCCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCC
Q psy9039 11 NMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLP 90 (251)
Q Consensus 11 ~~~~~p~~~~~pG~P~~~~~~~~i~~~a~~~a~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~ 90 (251)
.|.+.||+++ +||. ...+.+ +.+.++|+ |.+.+-- .|-||......++ ..++++|+.++
T Consensus 10 ~~~i~p~i~a--~d~~--~~~~~i--------~~~~~~G~-d~i~l~~-~dg~f~~~~~~~~-------~~i~~l~~~~~ 68 (230)
T 1rpx_A 10 DIIVSPSILS--ANFS--KLGEQV--------KAIEQAGC-DWIHVDV-MDGRFVPNITIGP-------LVVDSLRPITD 68 (230)
T ss_dssp SCEEEEBGGG--SCGG--GHHHHH--------HHHHHTTC-CCEEEEE-EBSSSSSCBCCCH-------HHHHHHGGGCC
T ss_pred ceEEEEEeec--CCHH--HHHHHH--------HHHHHCCC-CEEEEee-ccCCcccccccCH-------HHHHHHHhccC
Confidence 4568999999 8763 334555 56678999 9998632 2335543333443 55677888776
Q ss_pred CCccEEEEEeeCChHHHHHHHHHcCccceecccccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHhhccCCCCC
Q psy9039 91 PSVPVGVQILSGCNKAALATAQAAGLDFIRAESFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSSHAIT 170 (251)
Q Consensus 91 ~~~P~Gvn~~~N~~~~~~~ia~a~g~~Fir~~~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~k~~~~~~~ 170 (251)
.|+.+.+++|++......+...|++++...... . .+ +...+..+..++.+. ++...+. | .+
T Consensus 69 --~~~~v~l~vnd~~~~v~~~~~~Gad~v~vh~~~----~-~~---~~~~~~~~~~~~~g~---~ig~~~~-----p-~t 129 (230)
T 1rpx_A 69 --LPLDVHLMIVEPDQRVPDFIKAGADIVSVHCEQ----S-ST---IHLHRTINQIKSLGA---KAGVVLN-----P-GT 129 (230)
T ss_dssp --SCEEEEEESSSHHHHHHHHHHTTCSEEEEECST----T-TC---SCHHHHHHHHHHTTS---EEEEEEC-----T-TC
T ss_pred --CcEEEEEEecCHHHHHHHHHHcCCCEEEEEecC----c-cc---hhHHHHHHHHHHcCC---cEEEEeC-----C-CC
Confidence 699999999985556677777888988754110 0 00 122344555555443 2221121 1 12
Q ss_pred CcccHHHHHHHhhhccccEE---EecCCCCCC--CC-CHHHHHHHHhcC-----CCCEEEecCCChHhHHHhhc--CCEE
Q psy9039 171 ADVDITETAKAASFFLSDGL---IITGNATGD--PA-DVSQLMSVKNAV-----DLPILIGSGVTSDNVEHYMT--ADAL 237 (251)
Q Consensus 171 ~~~~i~~~a~~a~~~~~D~v---~VTG~~~g~--~~-~~~~l~~vr~~~-----~~PV~vG~GI~~~~v~~~~~--ADGv 237 (251)
+.+++..+ ..++|.+ .+...-+|. .. ..+.++++|+.+ ++|++++|||+++|+.++++ |||+
T Consensus 130 ~~e~~~~~-----~~~~d~vl~~~~~pg~~g~~~~~~~~~~i~~l~~~~~~~~~~~pi~v~GGI~~~n~~~~~~aGad~v 204 (230)
T 1rpx_A 130 PLTAIEYV-----LDAVDLVLIMSVNPGFGGQSFIESQVKKISDLRKICAERGLNPWIEVDGGVGPKNAYKVIEAGANAL 204 (230)
T ss_dssp CGGGGTTT-----TTTCSEEEEESSCTTCSSCCCCTTHHHHHHHHHHHHHHHTCCCEEEEESSCCTTTHHHHHHHTCCEE
T ss_pred CHHHHHHH-----HhhCCEEEEEEEcCCCCCccccHHHHHHHHHHHHHHHhcCCCceEEEECCCCHHHHHHHHHcCCCEE
Confidence 22332221 1357776 332111122 12 246678888776 79999999999999999876 9999
Q ss_pred EEeceEeec
Q psy9039 238 IIGSHFKQG 246 (251)
Q Consensus 238 IVGS~~~~~ 246 (251)
+|||+|.+.
T Consensus 205 vvgSaI~~a 213 (230)
T 1rpx_A 205 VAGSAVFGA 213 (230)
T ss_dssp EESHHHHTS
T ss_pred EEChhhhCC
Confidence 999998764
|
| >1h1y_A D-ribulose-5-phosphate 3-epimerase; oxidative pentose phosphate pathway, isomerase; 1.87A {Oryza sativa} SCOP: c.1.2.2 PDB: 1h1z_A | Back alignment and structure |
|---|
Probab=99.37 E-value=1.5e-12 Score=112.10 Aligned_cols=189 Identities=13% Similarity=0.114 Sum_probs=115.2
Q ss_pred cccccccCCCCCCCcchHHHHHHHHHhhCCCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCc
Q psy9039 14 DVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSV 93 (251)
Q Consensus 14 ~~p~~~~~pG~P~~~~~~~~i~~~a~~~a~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~ 93 (251)
+.||+.+ +| +....+.+ +.+.++|+ |.+.+--+ |-||......|+ ..++++|+.++ .
T Consensus 9 i~psi~a--~d--~~~l~~~i--------~~~~~~Ga-d~i~l~i~-Dg~fv~~~~~~~-------~~~~~lr~~~~--~ 65 (228)
T 1h1y_A 9 IAPSMLS--SD--FANLAAEA--------DRMVRLGA-DWLHMDIM-DGHFVPNLTIGA-------PVIQSLRKHTK--A 65 (228)
T ss_dssp EEEBGGG--SC--GGGHHHHH--------HHHHHTTC-SEEEEEEE-BSSSSSCBCBCH-------HHHHHHHTTCC--S
T ss_pred EEEEeee--CC--HHHHHHHH--------HHHHHcCC-CEEEEEEe-cCCcCcchhhCH-------HHHHHHHhhcC--C
Confidence 5799999 87 44444555 55678999 99866432 234544434454 55677888776 6
Q ss_pred cEEEEEeeCChHHHHHHHHHcCccceecccccccccCCCceeecCc-chhHHHHHhcCCCcchhhhhhHhhccCCCCCCc
Q psy9039 94 PVGVQILSGCNKAALATAQAAGLDFIRAESFVFGHMADEGLMNAQA-GPLLRYRKQIGADNVLVFTDIKKKHSSHAITAD 172 (251)
Q Consensus 94 P~Gvn~~~N~~~~~~~ia~a~g~~Fir~~~~~~~~~~~~Gli~~da-~e~~~~r~~l~~~~i~i~a~v~~k~~~~~~~~~ 172 (251)
|+.+-++.|++......+...|++.+..... -.+.. .+..+..++.+. ++.-.+++. ++.
T Consensus 66 ~~~v~lmv~d~~~~i~~~~~agad~v~vH~~----------~~~~~~~~~~~~i~~~g~---~igv~~~p~------t~~ 126 (228)
T 1h1y_A 66 YLDCHLMVTNPSDYVEPLAKAGASGFTFHIE----------VSRDNWQELIQSIKAKGM---RPGVSLRPG------TPV 126 (228)
T ss_dssp EEEEEEESSCGGGGHHHHHHHTCSEEEEEGG----------GCTTTHHHHHHHHHHTTC---EEEEEECTT------SCG
T ss_pred cEEEEEEecCHHHHHHHHHHcCCCEEEECCC----------CcccHHHHHHHHHHHcCC---CEEEEEeCC------CCH
Confidence 8887777787644466666677787754310 01122 334455455443 232112211 333
Q ss_pred ccHHHHHHHhhhccccEEEe-----cCCCCCCC-CCHHHHHHHHhcC-CCCEEEecCCChHhHHHhhc--CCEEEEeceE
Q psy9039 173 VDITETAKAASFFLSDGLII-----TGNATGDP-ADVSQLMSVKNAV-DLPILIGSGVTSDNVEHYMT--ADALIIGSHF 243 (251)
Q Consensus 173 ~~i~~~a~~a~~~~~D~v~V-----TG~~~g~~-~~~~~l~~vr~~~-~~PV~vG~GI~~~~v~~~~~--ADGvIVGS~~ 243 (251)
++++.+... ..++|.+.+ ++...... ..++.++++|+.. ++|++++|||+++|+.++.. ||+++|||++
T Consensus 127 e~~~~~~~~--~~~~d~vl~~sv~pg~~g~~~~~~~l~~i~~~~~~~~~~pi~v~GGI~~~ni~~~~~aGaD~vvvGsai 204 (228)
T 1h1y_A 127 EEVFPLVEA--ENPVELVLVMTVEPGFGGQKFMPEMMEKVRALRKKYPSLDIEVDGGLGPSTIDVAASAGANCIVAGSSI 204 (228)
T ss_dssp GGGHHHHHS--SSCCSEEEEESSCTTCSSCCCCGGGHHHHHHHHHHCTTSEEEEESSCSTTTHHHHHHHTCCEEEESHHH
T ss_pred HHHHHHHhc--CCCCCEEEEEeecCCCCcccCCHHHHHHHHHHHHhcCCCCEEEECCcCHHHHHHHHHcCCCEEEECHHH
Confidence 444443320 004566644 22111222 2357889999988 89999999999999999886 9999999998
Q ss_pred eec
Q psy9039 244 KQG 246 (251)
Q Consensus 244 ~~~ 246 (251)
.+.
T Consensus 205 ~~~ 207 (228)
T 1h1y_A 205 FGA 207 (228)
T ss_dssp HTS
T ss_pred HCC
Confidence 763
|
| >1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1 | Back alignment and structure |
|---|
Probab=99.34 E-value=1.5e-12 Score=111.96 Aligned_cols=181 Identities=17% Similarity=0.199 Sum_probs=120.7
Q ss_pred CCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHHHHHHHHcCccceecc
Q psy9039 43 PPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQAAGLDFIRAE 122 (251)
Q Consensus 43 ~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g~~Fir~~ 122 (251)
+.+.++|+ |.|.+.+.....+ + .......++++++.++ +|+.++...++ ...+..+...|++++..+
T Consensus 40 ~~~~~~G~-d~i~v~~~~~~~~------~---~~~~~~~i~~i~~~~~--ipvi~~g~i~~-~~~~~~~~~~Gad~V~i~ 106 (253)
T 1h5y_A 40 VRYEEEGA-DEIAILDITAAPE------G---RATFIDSVKRVAEAVS--IPVLVGGGVRS-LEDATTLFRAGADKVSVN 106 (253)
T ss_dssp HHHHHTTC-SCEEEEECCCCTT------T---HHHHHHHHHHHHHHCS--SCEEEESSCCS-HHHHHHHHHHTCSEEEES
T ss_pred HHHHHcCC-CEEEEEeCCcccc------C---CcccHHHHHHHHHhcC--CCEEEECCCCC-HHHHHHHHHcCCCEEEEC
Confidence 66788999 9999876543211 1 1124567888998888 89999998887 555666677888988864
Q ss_pred cccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhH-------hh-ccCCCCCCcccHHHHHHHhhhccccEEEecC
Q psy9039 123 SFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIK-------KK-HSSHAITADVDITETAKAASFFLSDGLIITG 194 (251)
Q Consensus 123 ~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~-------~k-~~~~~~~~~~~i~~~a~~a~~~~~D~v~VTG 194 (251)
.. ...+...+.+.++.++.+.+.+-.++. .+ ++.. .....+..+.++.+...|+|.+.+++
T Consensus 107 ~~----------~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~g~~~v~~~~~~-~~~~~~~~e~~~~~~~~G~d~i~~~~ 175 (253)
T 1h5y_A 107 TA----------AVRNPQLVALLAREFGSQSTVVAIDAKWNGEYYEVYVKGGR-EATGLDAVKWAKEVEELGAGEILLTS 175 (253)
T ss_dssp HH----------HHHCTHHHHHHHHHHCGGGEEEEEEEEECSSSEEEEETTTT-EEEEEEHHHHHHHHHHHTCSEEEEEE
T ss_pred hH----------HhhCcHHHHHHHHHcCCCcEEEEEEeecCCCcEEEEEeCCe-ecCCCCHHHHHHHHHhCCCCEEEEec
Confidence 11 112344556667777643333221221 00 0100 00112445556666667999999876
Q ss_pred CCC---CCCCCHHHHHHHHhcCCCCEEEecCCC-hHhHHHhhc--CCEEEEeceEeecC
Q psy9039 195 NAT---GDPADVSQLMSVKNAVDLPILIGSGVT-SDNVEHYMT--ADALIIGSHFKQGG 247 (251)
Q Consensus 195 ~~~---g~~~~~~~l~~vr~~~~~PV~vG~GI~-~~~v~~~~~--ADGvIVGS~~~~~g 247 (251)
... +...+.+.++++++.+++||+++|||+ ++++.+++. |||++|||+|.+++
T Consensus 176 ~~~~g~~~~~~~~~i~~l~~~~~~pvia~GGi~~~~~~~~~~~~Ga~~v~vgsal~~~~ 234 (253)
T 1h5y_A 176 IDRDGTGLGYDVELIRRVADSVRIPVIASGGAGRVEHFYEAAAAGADAVLAASLFHFRV 234 (253)
T ss_dssp TTTTTTCSCCCHHHHHHHHHHCSSCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHTTS
T ss_pred ccCCCCcCcCCHHHHHHHHHhcCCCEEEeCCCCCHHHHHHHHHcCCcHHHHHHHHHcCC
Confidence 543 223467889999998899999999995 799999886 99999999998764
|
| >1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1 | Back alignment and structure |
|---|
Probab=99.30 E-value=1.7e-12 Score=112.47 Aligned_cols=181 Identities=15% Similarity=0.178 Sum_probs=118.2
Q ss_pred CCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHHHHHHHHcCccceecc
Q psy9039 43 PPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQAAGLDFIRAE 122 (251)
Q Consensus 43 ~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g~~Fir~~ 122 (251)
+.+.++|+ |.|.+ +++.+++.. .......++++++.++ +|+.++.+.|+ ......+.+.|++.+...
T Consensus 38 ~~~~~~Ga-d~i~v--------~d~~~~~~~-~~~~~~~i~~i~~~~~--iPvi~~Ggi~~-~~~~~~~~~~Gad~V~lg 104 (252)
T 1ka9_F 38 RAYDEAGA-DELVF--------LDISATHEE-RAILLDVVARVAERVF--IPLTVGGGVRS-LEDARKLLLSGADKVSVN 104 (252)
T ss_dssp HHHHHHTC-SCEEE--------EECCSSTTC-HHHHHHHHHHHHTTCC--SCEEEESSCCS-HHHHHHHHHHTCSEEEEC
T ss_pred HHHHHcCC-CEEEE--------EcCCccccC-ccccHHHHHHHHHhCC--CCEEEECCcCC-HHHHHHHHHcCCCEEEEC
Confidence 56788999 99854 344322211 1224567788998887 89999999998 566666667777776652
Q ss_pred cccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhH-------hh-ccCCCCCCcccHHHHHHHhhhccccEEEecC
Q psy9039 123 SFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIK-------KK-HSSHAITADVDITETAKAASFFLSDGLIITG 194 (251)
Q Consensus 123 ~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~-------~k-~~~~~~~~~~~i~~~a~~a~~~~~D~v~VTG 194 (251)
. . ...+...+.+.++.++.+.+.+-.++. ++ |+..- .+..+..+.++.+...|++.+++|+
T Consensus 105 ~---------~-~l~~p~~~~~~~~~~~~~~i~~~~~~~~~~g~~~v~~~g~~~-~~~~~~~e~~~~~~~~G~~~i~~~~ 173 (252)
T 1ka9_F 105 S---------A-AVRRPELIRELADHFGAQAVVLAIDARWRGDFPEVHVAGGRV-PTGLHAVEWAVKGVELGAGEILLTS 173 (252)
T ss_dssp H---------H-HHHCTHHHHHHHHHHCGGGEEEEEEEEEETTEEEEEETTTTE-EEEEEHHHHHHHHHHHTCCEEEEEE
T ss_pred h---------H-HHhCcHHHHHHHHHcCCCcEEEEEEEecCCCCEEEEECCCcc-ccCCcHHHHHHHHHHcCCCEEEEec
Confidence 1 0 112233455666666543332322221 00 11110 0113455666777667999999986
Q ss_pred CC-CCC--CCCHHHHHHHHhcCCCCEEEecCCC-hHhHHHhhc--CCEEEEeceEeecC
Q psy9039 195 NA-TGD--PADVSQLMSVKNAVDLPILIGSGVT-SDNVEHYMT--ADALIIGSHFKQGG 247 (251)
Q Consensus 195 ~~-~g~--~~~~~~l~~vr~~~~~PV~vG~GI~-~~~v~~~~~--ADGvIVGS~~~~~g 247 (251)
.. ++. ..+++.++++++.+++||+++|||+ ++++.++++ |||++|||+|.++.
T Consensus 174 ~~~~g~~~g~~~~~i~~l~~~~~ipvia~GGI~~~~d~~~~~~~Gadgv~vgsal~~~~ 232 (252)
T 1ka9_F 174 MDRDGTKEGYDLRLTRMVAEAVGVPVIASGGAGRMEHFLEAFQAGAEAALAASVFHFGE 232 (252)
T ss_dssp TTTTTTCSCCCHHHHHHHHHHCSSCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHTTS
T ss_pred ccCCCCcCCCCHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHCCCHHHHHHHHHHcCC
Confidence 43 232 2358999999999999999999995 899999886 99999999997654
|
| >3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0 | Back alignment and structure |
|---|
Probab=99.30 E-value=2.4e-12 Score=108.89 Aligned_cols=177 Identities=18% Similarity=0.227 Sum_probs=112.9
Q ss_pred CCCcchHHHHHHHHHhhCCCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCCh
Q psy9039 25 PEITANMTRLCAEIRKVLPPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCN 104 (251)
Q Consensus 25 P~~~~~~~~i~~~a~~~a~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~ 104 (251)
|+.+.+++.+ +.+. .|+ |.+++ |+||+.. .|+ ..++++|+..++ .|+.+++...++
T Consensus 10 ~~~~~~~~~~--------~~~~-~~~-diie~----G~p~~~~--~g~-------~~i~~ir~~~~~-~~i~~~~~~~~~ 65 (211)
T 3f4w_A 10 LTLPEAMVFM--------DKVV-DDV-DIIEV----GTPFLIR--EGV-------NAIKAIKEKYPH-KEVLADAKIMDG 65 (211)
T ss_dssp CCHHHHHHHH--------HHHG-GGC-SEEEE----CHHHHHH--HTT-------HHHHHHHHHCTT-SEEEEEEEECSC
T ss_pred CCHHHHHHHH--------HHhh-cCc-cEEEe----CcHHHHh--ccH-------HHHHHHHHhCCC-CEEEEEEEeccc
Confidence 5555556655 4454 599 99975 7788532 343 467888887433 699998887764
Q ss_pred HHH-HHHHHHcCccceecccccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHhhccCCCCCCcccHHHHHHHhh
Q psy9039 105 KAA-LATAQAAGLDFIRAESFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSSHAITADVDITETAKAAS 183 (251)
Q Consensus 105 ~~~-~~ia~a~g~~Fir~~~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~ 183 (251)
... ...+...|++++-..... ...+..++.++.++++. +++-++. .+ .+..+.++.+.
T Consensus 66 ~~~~~~~~~~~Gad~v~v~~~~---------~~~~~~~~~~~~~~~g~---~~~v~~~----~~-----~t~~~~~~~~~ 124 (211)
T 3f4w_A 66 GHFESQLLFDAGADYVTVLGVT---------DVLTIQSCIRAAKEAGK---QVVVDMI----CV-----DDLPARVRLLE 124 (211)
T ss_dssp HHHHHHHHHHTTCSEEEEETTS---------CHHHHHHHHHHHHHHTC---EEEEECT----TC-----SSHHHHHHHHH
T ss_pred hHHHHHHHHhcCCCEEEEeCCC---------ChhHHHHHHHHHHHcCC---eEEEEec----CC-----CCHHHHHHHHH
Confidence 443 555666777776643110 01123456666677664 2221100 01 12334445555
Q ss_pred hccccEEEec----CCCCCCCCCHHHHHHHHhcC-CCCEEEecCCChHhHHHhhc--CCEEEEeceEeecC
Q psy9039 184 FFLSDGLIIT----GNATGDPADVSQLMSVKNAV-DLPILIGSGVTSDNVEHYMT--ADALIIGSHFKQGG 247 (251)
Q Consensus 184 ~~~~D~v~VT----G~~~g~~~~~~~l~~vr~~~-~~PV~vG~GI~~~~v~~~~~--ADGvIVGS~~~~~g 247 (251)
..|+|.+.+. |.+.+ ....+.++++|+.. ++|++++|||+++|+.++++ ||+++|||+|.+..
T Consensus 125 ~~g~d~i~v~~g~~g~~~~-~~~~~~i~~l~~~~~~~~i~~~gGI~~~~~~~~~~~Gad~vvvGsai~~~~ 194 (211)
T 3f4w_A 125 EAGADMLAVHTGTDQQAAG-RKPIDDLITMLKVRRKARIAVAGGISSQTVKDYALLGPDVVIVGSAITHAA 194 (211)
T ss_dssp HHTCCEEEEECCHHHHHTT-CCSHHHHHHHHHHCSSCEEEEESSCCTTTHHHHHTTCCSEEEECHHHHTCS
T ss_pred HcCCCEEEEcCCCcccccC-CCCHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHcCCCEEEECHHHcCCC
Confidence 5688887763 22221 23578899999886 89999999999999999996 99999999987643
|
| >3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=99.27 E-value=1.8e-11 Score=106.02 Aligned_cols=172 Identities=16% Similarity=0.157 Sum_probs=115.4
Q ss_pred ccCCCCCCCcc-hHHHHHHHHHhhCCCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCcc-EE
Q psy9039 19 LEAESGPEITA-NMTRLCAEIRKVLPPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVP-VG 96 (251)
Q Consensus 19 ~~~pG~P~~~~-~~~~i~~~a~~~a~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P-~G 96 (251)
.++||.|-++. .+..+ |++++++|+ .+|.+.+ ...++++|+.++ +| +|
T Consensus 25 q~~~~~pl~~~~~~~~~-------A~a~~~~Ga-~~i~~~~--------------------~~~i~~ir~~v~--~Pvig 74 (229)
T 3q58_A 25 QPVPGSPMDKPEIVAAM-------AQAAASAGA-VAVRIEG--------------------IENLRTVRPHLS--VPIIG 74 (229)
T ss_dssp CCCTTSTTCSHHHHHHH-------HHHHHHTTC-SEEEEES--------------------HHHHHHHGGGCC--SCEEE
T ss_pred eCCCCCCCCCcchHHHH-------HHHHHHCCC-cEEEECC--------------------HHHHHHHHHhcC--CCEEE
Confidence 56789999985 44444 367789999 9997521 245789999998 79 56
Q ss_pred EEE--------eeCChHHHHHHHHHcCccceecccccccccCCCceeec-CcchhHHHHHhcCCCcchhhhhhHhhccCC
Q psy9039 97 VQI--------LSGCNKAALATAQAAGLDFIRAESFVFGHMADEGLMNA-QAGPLLRYRKQIGADNVLVFTDIKKKHSSH 167 (251)
Q Consensus 97 vn~--------~~N~~~~~~~ia~a~g~~Fir~~~~~~~~~~~~Gli~~-da~e~~~~r~~l~~~~i~i~a~v~~k~~~~ 167 (251)
++- |..+.......+...|++++-... .. ...| ...++.++.++.+. .++.+
T Consensus 75 ~~k~~~~~~~~~I~~~~~~i~~~~~aGad~I~l~~----~~----~~~p~~l~~~i~~~~~~g~---~v~~~-------- 135 (229)
T 3q58_A 75 IIKRDLTGSPVRITPYLQDVDALAQAGADIIAFDA----SF----RSRPVDIDSLLTRIRLHGL---LAMAD-------- 135 (229)
T ss_dssp ECBCCCSSCCCCBSCSHHHHHHHHHHTCSEEEEEC----CS----SCCSSCHHHHHHHHHHTTC---EEEEE--------
T ss_pred EEeecCCCCceEeCccHHHHHHHHHcCCCEEEECc----cc----cCChHHHHHHHHHHHHCCC---EEEEe--------
Confidence 652 333323455667788999886531 11 0112 23455555555543 33321
Q ss_pred CCCCcccHHHHHHHhhhccccEEEec--CCCC---CCCCCHHHHHHHHhcCCCCEEEecCC-ChHhHHHhhc--CCEEEE
Q psy9039 168 AITADVDITETAKAASFFLSDGLIIT--GNAT---GDPADVSQLMSVKNAVDLPILIGSGV-TSDNVEHYMT--ADALII 239 (251)
Q Consensus 168 ~~~~~~~i~~~a~~a~~~~~D~v~VT--G~~~---g~~~~~~~l~~vr~~~~~PV~vG~GI-~~~~v~~~~~--ADGvIV 239 (251)
....+.++.+...|+|.+++| |..+ ...++++.++++++. ++||++.||| |++++.+++. ||||+|
T Consensus 136 -----v~t~eea~~a~~~Gad~Ig~~~~g~t~~~~~~~~~~~li~~l~~~-~ipvIA~GGI~t~~d~~~~~~~GadgV~V 209 (229)
T 3q58_A 136 -----CSTVNEGISCHQKGIEFIGTTLSGYTGPITPVEPDLAMVTQLSHA-GCRVIAEGRYNTPALAANAIEHGAWAVTV 209 (229)
T ss_dssp -----CSSHHHHHHHHHTTCSEEECTTTTSSSSCCCSSCCHHHHHHHHTT-TCCEEEESSCCSHHHHHHHHHTTCSEEEE
T ss_pred -----cCCHHHHHHHHhCCCCEEEecCccCCCCCcCCCCCHHHHHHHHHc-CCCEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 122345666777799999764 3211 134578999999988 9999999999 7999999996 999999
Q ss_pred eceEee
Q psy9039 240 GSHFKQ 245 (251)
Q Consensus 240 GS~~~~ 245 (251)
||+|.+
T Consensus 210 Gsai~~ 215 (229)
T 3q58_A 210 GSAITR 215 (229)
T ss_dssp CHHHHC
T ss_pred chHhcC
Confidence 999875
|
| >3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0 | Back alignment and structure |
|---|
Probab=99.27 E-value=1.8e-11 Score=106.07 Aligned_cols=172 Identities=15% Similarity=0.157 Sum_probs=114.3
Q ss_pred ccCCCCCCCcc-hHHHHHHHHHhhCCCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCcc-EE
Q psy9039 19 LEAESGPEITA-NMTRLCAEIRKVLPPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVP-VG 96 (251)
Q Consensus 19 ~~~pG~P~~~~-~~~~i~~~a~~~a~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P-~G 96 (251)
.++||.|-+.. .+..+ +++++++|+ .+|.+.+ ...++++|+.++ +| +|
T Consensus 25 q~~~~~pl~~~~~~~~~-------A~a~~~~Ga-~~i~~~~--------------------~~~i~~ir~~v~--~Pvig 74 (232)
T 3igs_A 25 QPVPGSPLDKPEIVAAM-------ALAAEQAGA-VAVRIEG--------------------IDNLRMTRSLVS--VPIIG 74 (232)
T ss_dssp CCCTTCTTCSHHHHHHH-------HHHHHHTTC-SEEEEES--------------------HHHHHHHHTTCC--SCEEE
T ss_pred eCCCCCCCCCcchHHHH-------HHHHHHCCC-eEEEECC--------------------HHHHHHHHHhcC--CCEEE
Confidence 56789999984 44444 367789999 9997511 245789999988 79 55
Q ss_pred EE--------EeeCChHHHHHHHHHcCccceecccccccccCCCceeec-CcchhHHHHHhcCCCcchhhhhhHhhccCC
Q psy9039 97 VQ--------ILSGCNKAALATAQAAGLDFIRAESFVFGHMADEGLMNA-QAGPLLRYRKQIGADNVLVFTDIKKKHSSH 167 (251)
Q Consensus 97 vn--------~~~N~~~~~~~ia~a~g~~Fir~~~~~~~~~~~~Gli~~-da~e~~~~r~~l~~~~i~i~a~v~~k~~~~ 167 (251)
++ +|..+.......+...|++++-... .. ...| ...++.++.++.+. .++.+
T Consensus 75 ~~k~d~~~~~~~I~~~~~~i~~~~~~Gad~V~l~~----~~----~~~p~~l~~~i~~~~~~g~---~v~~~-------- 135 (232)
T 3igs_A 75 IIKRDLDESPVRITPFLDDVDALAQAGAAIIAVDG----TA----RQRPVAVEALLARIHHHHL---LTMAD-------- 135 (232)
T ss_dssp ECBCCCSSCCCCBSCSHHHHHHHHHHTCSEEEEEC----CS----SCCSSCHHHHHHHHHHTTC---EEEEE--------
T ss_pred EEeecCCCcceEeCccHHHHHHHHHcCCCEEEECc----cc----cCCHHHHHHHHHHHHHCCC---EEEEe--------
Confidence 44 2333323455667788999886531 11 0112 23445555555543 33321
Q ss_pred CCCCcccHHHHHHHhhhccccEEEec--CCCC---CCCCCHHHHHHHHhcCCCCEEEecCC-ChHhHHHhhc--CCEEEE
Q psy9039 168 AITADVDITETAKAASFFLSDGLIIT--GNAT---GDPADVSQLMSVKNAVDLPILIGSGV-TSDNVEHYMT--ADALII 239 (251)
Q Consensus 168 ~~~~~~~i~~~a~~a~~~~~D~v~VT--G~~~---g~~~~~~~l~~vr~~~~~PV~vG~GI-~~~~v~~~~~--ADGvIV 239 (251)
....+.++.+...|+|.++++ |..+ ...++++.++++++. ++||++.||| |++++.+++. |||++|
T Consensus 136 -----v~t~eea~~a~~~Gad~Ig~~~~g~t~~~~~~~~~~~~i~~l~~~-~ipvIA~GGI~t~~d~~~~~~~GadgV~V 209 (232)
T 3igs_A 136 -----CSSVDDGLACQRLGADIIGTTMSGYTTPDTPEEPDLPLVKALHDA-GCRVIAEGRYNSPALAAEAIRYGAWAVTV 209 (232)
T ss_dssp -----CCSHHHHHHHHHTTCSEEECTTTTSSSSSCCSSCCHHHHHHHHHT-TCCEEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred -----CCCHHHHHHHHhCCCCEEEEcCccCCCCCCCCCCCHHHHHHHHhc-CCcEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 122345666777799999764 3211 234578999999988 9999999999 7999999996 999999
Q ss_pred eceEee
Q psy9039 240 GSHFKQ 245 (251)
Q Consensus 240 GS~~~~ 245 (251)
||+|.+
T Consensus 210 Gsal~~ 215 (232)
T 3igs_A 210 GSAITR 215 (232)
T ss_dssp CHHHHC
T ss_pred ehHhcC
Confidence 999874
|
| >1xm3_A Thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI, NESG, northeast structural genomics consortium; 1.80A {Bacillus subtilis} SCOP: c.1.31.1 PDB: 1tyg_A | Back alignment and structure |
|---|
Probab=99.26 E-value=4.5e-12 Score=111.81 Aligned_cols=66 Identities=14% Similarity=0.301 Sum_probs=50.5
Q ss_pred HHHhhhccccEEEe----cCCCCCCCCCHHHHHHHHhcCCCCEEEecCC-ChHhHHHhhc--CCEEEEeceEee
Q psy9039 179 AKAASFFLSDGLII----TGNATGDPADVSQLMSVKNAVDLPILIGSGV-TSDNVEHYMT--ADALIIGSHFKQ 245 (251)
Q Consensus 179 a~~a~~~~~D~v~V----TG~~~g~~~~~~~l~~vr~~~~~PV~vG~GI-~~~~v~~~~~--ADGvIVGS~~~~ 245 (251)
++.+...++|.+.. ||++.+. .+.+.++++|+.+++||+++||| +++++++++. ||||+|||+|.+
T Consensus 140 a~~~~~~gad~v~~~~~~~Gt~~~~-~~~~~l~~i~~~~~iPviv~gGI~t~eda~~~~~~GAdgViVGSAi~~ 212 (264)
T 1xm3_A 140 ARKLEELGVHAIMPGASPIGSGQGI-LNPLNLSFIIEQAKVPVIVDAGIGSPKDAAYAMELGADGVLLNTAVSG 212 (264)
T ss_dssp HHHHHHHTCSCBEECSSSTTCCCCC-SCHHHHHHHHHHCSSCBEEESCCCSHHHHHHHHHTTCSEEEESHHHHT
T ss_pred HHHHHHhCCCEEEECCcccCCCCCC-CCHHHHHHHHhcCCCCEEEEeCCCCHHHHHHHHHcCCCEEEEcHHHhC
Confidence 44444456777644 4444332 24678999999889999999999 5999999885 999999999875
|
| >2tps_A Protein (thiamin phosphate synthase); thiamin biosynthesis, TIM barrel; HET: TPS; 1.25A {Bacillus subtilis} SCOP: c.1.3.1 PDB: 1g4t_A* 3o15_A* 1g6c_A* 1g4e_A* 1g69_A* 3o16_A 1g4s_A* 1g4p_A* 1g67_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=3.8e-11 Score=102.32 Aligned_cols=159 Identities=19% Similarity=0.140 Sum_probs=100.5
Q ss_pred CCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHHHHHHHHcCccceecc
Q psy9039 43 PPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQAAGLDFIRAE 122 (251)
Q Consensus 43 ~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g~~Fir~~ 122 (251)
+.+.++|+ |.|.+ ..+..++...++ ...+.+.++++.+..+ +|+-+| .. ...+...|+++++..
T Consensus 38 ~~~~~~G~-~~i~l----~~~~~~~~~~~~--~~~~~~~l~~~~~~~~--v~v~v~----~~---~~~a~~~gad~v~l~ 101 (227)
T 2tps_A 38 QKALKGGA-TLYQF----REKGGDALTGEA--RIKFAEKAQAACREAG--VPFIVN----DD---VELALNLKADGIHIG 101 (227)
T ss_dssp HHHHHHTC-SEEEE----CCCSTTCCCHHH--HHHHHHHHHHHHHHHT--CCEEEE----SC---HHHHHHHTCSEEEEC
T ss_pred HHHHHCCC-CEEEE----ecCCCCHhHHHH--HHHHHHHHHHHHHHcC--CeEEEc----CH---HHHHHHcCCCEEEEC
Confidence 66778999 99986 444444433333 2334444444444444 565554 32 456677788888742
Q ss_pred cccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHhhccCCCCCCcccHHHHHHHhhhccccEEEe-----cCCCC
Q psy9039 123 SFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSSHAITADVDITETAKAASFFLSDGLII-----TGNAT 197 (251)
Q Consensus 123 ~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~~~~~D~v~V-----TG~~~ 197 (251)
.. ..++.+.++.++. .++. + +.+ +..+ +..+...|+|++.+ |+.+.
T Consensus 102 --------~~------~~~~~~~~~~~g~---~~~~-~----s~~------t~~e-~~~a~~~g~d~v~~~~v~~t~~~~ 152 (227)
T 2tps_A 102 --------QE------DANAKEVRAAIGD---MILG-V----SAH------TMSE-VKQAEEDGADYVGLGPIYPTETKK 152 (227)
T ss_dssp --------TT------SSCHHHHHHHHTT---SEEE-E----EEC------SHHH-HHHHHHHTCSEEEECCSSCCCSSS
T ss_pred --------CC------ccCHHHHHHhcCC---cEEE-E----ecC------CHHH-HHHHHhCCCCEEEECCCcCCCCCC
Confidence 10 1135566666653 1110 1 111 2333 34444568999985 66655
Q ss_pred C--CCCCHHHHHHHHhcCC-CCEEEecCCChHhHHHhhc--CCEEEEeceEeec
Q psy9039 198 G--DPADVSQLMSVKNAVD-LPILIGSGVTSDNVEHYMT--ADALIIGSHFKQG 246 (251)
Q Consensus 198 g--~~~~~~~l~~vr~~~~-~PV~vG~GI~~~~v~~~~~--ADGvIVGS~~~~~ 246 (251)
+ ....++.++++++..+ +|++++|||+++|+.+++. |||++|||+|.+.
T Consensus 153 ~~~~~~~~~~l~~~~~~~~~~pvia~GGI~~~nv~~~~~~Ga~gv~vgs~i~~~ 206 (227)
T 2tps_A 153 DTRAVQGVSLIEAVRRQGISIPIVGIGGITIDNAAPVIQAGADGVSMISAISQA 206 (227)
T ss_dssp SCCCCCTTHHHHHHHHTTCCCCEEEESSCCTTTSHHHHHTTCSEEEESHHHHTS
T ss_pred CCCCccCHHHHHHHHHhCCCCCEEEEcCCCHHHHHHHHHcCCCEEEEhHHhhcC
Confidence 4 3346788999998887 9999999999999999885 9999999998753
|
| >1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A | Back alignment and structure |
|---|
Probab=99.21 E-value=2.2e-11 Score=105.58 Aligned_cols=181 Identities=14% Similarity=0.138 Sum_probs=117.7
Q ss_pred CCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHHHHHHHHcCccceecc
Q psy9039 43 PPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQAAGLDFIRAE 122 (251)
Q Consensus 43 ~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g~~Fir~~ 122 (251)
+.++++|+ |.|.+-+..+ .+. -.......++++++.++ +|+-++...++ ......+...|++.+...
T Consensus 37 ~~~~~~Ga-d~i~v~d~~~--------~~~-~~~~~~~~i~~i~~~~~--ipvi~~ggI~~-~~~~~~~~~~Gad~V~lg 103 (253)
T 1thf_D 37 KFYSEIGI-DELVFLDITA--------SVE-KRKTMLELVEKVAEQID--IPFTVGGGIHD-FETASELILRGADKVSIN 103 (253)
T ss_dssp HHHHHTTC-CEEEEEESSC--------SSS-HHHHHHHHHHHHHTTCC--SCEEEESSCCS-HHHHHHHHHTTCSEEEES
T ss_pred HHHHHcCC-CEEEEECCch--------hhc-CCcccHHHHHHHHHhCC--CCEEEeCCCCC-HHHHHHHHHcCCCEEEEC
Confidence 56788999 9997654332 111 12234567888998888 89999999987 455666666777776642
Q ss_pred cccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhH-------hh-ccCCCCCCcccHHHHHHHhhhccccEEEecC
Q psy9039 123 SFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIK-------KK-HSSHAITADVDITETAKAASFFLSDGLIITG 194 (251)
Q Consensus 123 ~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~-------~k-~~~~~~~~~~~i~~~a~~a~~~~~D~v~VTG 194 (251)
. . ...+...+.+.++.++.+.+.+--++. ++ |+..- .+..+..+.++.+...|++.+++|+
T Consensus 104 ~----~------~l~~p~~~~~~~~~~g~~~i~~~~~~~~~~g~~~v~~~g~~~-~~~~~~~e~~~~~~~~G~~~i~~~~ 172 (253)
T 1thf_D 104 T----A------AVENPSLITQIAQTFGSQAVVVAIDAKRVDGEFMVFTYSGKK-NTGILLRDWVVEVEKRGAGEILLTS 172 (253)
T ss_dssp H----H------HHHCTHHHHHHHHHHCGGGEEEEEEEEEETTEEEEEETTTTE-EEEEEHHHHHHHHHHTTCSEEEEEE
T ss_pred h----H------HHhChHHHHHHHHHcCCCcEEEEEEEEccCCcEEEEECCCcc-ccCCCHHHHHHHHHHCCCCEEEEEe
Confidence 1 0 112334466666666643222211111 00 11110 0112455666777667999999987
Q ss_pred CCCCC---CCCHHHHHHHHhcCCCCEEEecCCC-hHhHHHhhc--CCEEEEeceEeecC
Q psy9039 195 NATGD---PADVSQLMSVKNAVDLPILIGSGVT-SDNVEHYMT--ADALIIGSHFKQGG 247 (251)
Q Consensus 195 ~~~g~---~~~~~~l~~vr~~~~~PV~vG~GI~-~~~v~~~~~--ADGvIVGS~~~~~g 247 (251)
...+. ..+++.++++++.+++||+++|||+ ++++.+++. |||++|||+|..+.
T Consensus 173 ~~~~g~~~g~~~~~~~~l~~~~~ipvia~GGI~~~~d~~~~~~~Gadgv~vGsal~~~~ 231 (253)
T 1thf_D 173 IDRDGTKSGYDTEMIRFVRPLTTLPIIASGGAGKMEHFLEAFLAGADAALAASVFHFRE 231 (253)
T ss_dssp TTTTTSCSCCCHHHHHHHGGGCCSCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHTTC
T ss_pred ccCCCCCCCCCHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcCChHHHHHHHHHcCC
Confidence 53322 2468899999998999999999995 799999886 99999999997653
|
| >2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.21 E-value=3.7e-11 Score=104.95 Aligned_cols=182 Identities=19% Similarity=0.174 Sum_probs=111.1
Q ss_pred CCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHHHHHHHHcCccceecc
Q psy9039 43 PPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQAAGLDFIRAE 122 (251)
Q Consensus 43 ~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g~~Fir~~ 122 (251)
+.+.++|+ |.|.+.+... .+.. .++ ....++++++.++ +|+.++.+.|+ ...+..+...|++.+-..
T Consensus 37 ~~~~~~Ga-~~i~v~d~~~-~~~~---~g~-----~~~~i~~i~~~~~--iPvi~~ggi~~-~~~i~~~~~~Gad~v~lg 103 (266)
T 2w6r_A 37 VEVEKRGA-GEILLTSIDR-DGTK---SGY-----DTEMIRFVRPLTT--LPIIASGGAGK-MEHFLEAFLAGADKALAA 103 (266)
T ss_dssp HHHHHHTC-SEEEEEETTT-SSCS---SCC-----CHHHHHHHGGGCC--SCEEEESCCCS-THHHHHHHHHTCSEEECC
T ss_pred HHHHHCCC-CEEEEEecCc-ccCC---Ccc-----cHHHHHHHHHhcC--CCEEEECCCCC-HHHHHHHHHcCCcHhhhh
Confidence 66778999 9999854321 1111 122 3467788888888 89999999987 566666666777766542
Q ss_pred cccccccCCCceeec--CcchhHHHHHhcC--CCcchhhhhhH-------hh-ccCCCCCCcccHHHHHHHhhhccccEE
Q psy9039 123 SFVFGHMADEGLMNA--QAGPLLRYRKQIG--ADNVLVFTDIK-------KK-HSSHAITADVDITETAKAASFFLSDGL 190 (251)
Q Consensus 123 ~~~~~~~~~~Gli~~--da~e~~~~r~~l~--~~~i~i~a~v~-------~k-~~~~~~~~~~~i~~~a~~a~~~~~D~v 190 (251)
...+.. +...+.++.+.++ .+.+.+-.++. ++ |+..- .++.+..+.++.+...|++.+
T Consensus 104 ---------~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~d~~~~~g~~~v~~~g~~~-~~~~~~~e~~~~~~~~G~~~i 173 (266)
T 2w6r_A 104 ---------SVFHFREIDMRELKEYLKKHGGSGQAVVVAIDAKRVDGEFMVFTHSGKK-NTGILLRDWVVEVEKRGAGEI 173 (266)
T ss_dssp ---------CCC------CHHHHHHCC----CCCEEEEEEEEEEETTEEEEEETTTTE-EEEEEHHHHHHHHHHTTCSEE
T ss_pred ---------HHHHhCCCCHHHHHHHHHHcCCCCCEEEEEEEEEecCCCEEEEECCCce-ecchhHHHHHHHHHHcCCCEE
Confidence 111212 3334444444444 22221111110 00 11100 011245566677777799999
Q ss_pred EecCCC-CCC--CCCHHHHHHHHhcCCCCEEEecCC-ChHhHHHhhc--CCEEEEeceEeecC
Q psy9039 191 IITGNA-TGD--PADVSQLMSVKNAVDLPILIGSGV-TSDNVEHYMT--ADALIIGSHFKQGG 247 (251)
Q Consensus 191 ~VTG~~-~g~--~~~~~~l~~vr~~~~~PV~vG~GI-~~~~v~~~~~--ADGvIVGS~~~~~g 247 (251)
++|+.. .|. ..+++.++++++.+++||+++||| +++++.+++. |||++|||+|.++.
T Consensus 174 ~~t~~~~~g~~~g~~~~~i~~l~~~~~ipvia~GGI~~~ed~~~~~~~Gadgv~vgsal~~~~ 236 (266)
T 2w6r_A 174 LLTSIDRDGTKSGYDTEMIRFVRPLTTLPIIASGGAGKMEHFLEAFLAGADAALAASVFHFRE 236 (266)
T ss_dssp EEEETTTTTTCSCCCHHHHHHHGGGCCSCEEEESCCCSHHHHHHHHHHTCSEEEESTTTC---
T ss_pred EEEeecCCCCcCCCCHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHcCCHHHHccHHHHcCC
Confidence 998743 232 246889999999999999999999 5899999886 99999999998764
|
| >3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=3.7e-11 Score=106.57 Aligned_cols=165 Identities=16% Similarity=0.161 Sum_probs=110.3
Q ss_pred CCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHHHHHHHHcCccceecc
Q psy9039 43 PPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQAAGLDFIRAE 122 (251)
Q Consensus 43 ~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g~~Fir~~ 122 (251)
+.++++|+ ++|-+-.+- .|.. | ....++++|+.++ +|+-..-+.-+ .+++..|.+.|++.+...
T Consensus 79 ~~y~~~GA-~~isvltd~--~~f~----G------s~~~l~~ir~~v~--lPvl~kdfiid-~~qv~~A~~~GAD~VlLi 142 (272)
T 3qja_A 79 QAYQDGGA-RIVSVVTEQ--RRFQ----G------SLDDLDAVRASVS--IPVLRKDFVVQ-PYQIHEARAHGADMLLLI 142 (272)
T ss_dssp HHHHHTTC-SEEEEECCG--GGHH----H------HHHHHHHHHHHCS--SCEEEESCCCS-HHHHHHHHHTTCSEEEEE
T ss_pred HHHHHcCC-CEEEEecCh--hhcC----C------CHHHHHHHHHhCC--CCEEECccccC-HHHHHHHHHcCCCEEEEe
Confidence 66889999 999873322 2222 1 2346778888888 79877655444 566788888888887752
Q ss_pred cccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHhhccCCCCCCcccHHHHHHHhhhccccEEEecCCCC-CCCC
Q psy9039 123 SFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSSHAITADVDITETAKAASFFLSDGLIITGNAT-GDPA 201 (251)
Q Consensus 123 ~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~~~~~D~v~VTG~~~-g~~~ 201 (251)
. ..+ -..+..++.++.+++|.+ ++.++ + +.++ ++.+...|+|.++||+... ....
T Consensus 143 ~---a~l-----~~~~l~~l~~~a~~lGl~---~lvev------~------t~ee-~~~A~~~Gad~IGv~~r~l~~~~~ 198 (272)
T 3qja_A 143 V---AAL-----EQSVLVSMLDRTESLGMT---ALVEV------H------TEQE-ADRALKAGAKVIGVNARDLMTLDV 198 (272)
T ss_dssp G---GGS-----CHHHHHHHHHHHHHTTCE---EEEEE------S------SHHH-HHHHHHHTCSEEEEESBCTTTCCB
T ss_pred c---ccC-----CHHHHHHHHHHHHHCCCc---EEEEc------C------CHHH-HHHHHHCCCCEEEECCCccccccc
Confidence 1 000 011245566777777752 22111 1 2233 3444456999999998642 2345
Q ss_pred CHHHHHHHHhcC--CCCEEEecCC-ChHhHHHhhc--CCEEEEeceEeecC
Q psy9039 202 DVSQLMSVKNAV--DLPILIGSGV-TSDNVEHYMT--ADALIIGSHFKQGG 247 (251)
Q Consensus 202 ~~~~l~~vr~~~--~~PV~vG~GI-~~~~v~~~~~--ADGvIVGS~~~~~g 247 (251)
+++.+.++++.+ ++|++++||| |++++.++.. |||++|||+|++..
T Consensus 199 dl~~~~~l~~~v~~~~pvVaegGI~t~edv~~l~~~GadgvlVGsal~~a~ 249 (272)
T 3qja_A 199 DRDCFARIAPGLPSSVIRIAESGVRGTADLLAYAGAGADAVLVGEGLVTSG 249 (272)
T ss_dssp CTTHHHHHGGGSCTTSEEEEESCCCSHHHHHHHHHTTCSEEEECHHHHTCS
T ss_pred CHHHHHHHHHhCcccCEEEEECCCCCHHHHHHHHHcCCCEEEEcHHHhCCC
Confidence 677788888876 7999999999 5999999986 99999999997654
|
| >2z6i_A Trans-2-enoyl-ACP reductase II; fatty acid synthesis, antibiotics, oxidoreductase, flavoprotein; HET: FMN; 1.70A {Streptococcus pneumoniae} PDB: 2z6j_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=1.1e-10 Score=105.90 Aligned_cols=141 Identities=16% Similarity=0.306 Sum_probs=99.1
Q ss_pred HHHHHHHHHHHhCCCCccEEEEEee-CCh-HHHHHHHHHcCccceecccccccccCCCceeecCcchhHHHHHhcCCCcc
Q psy9039 77 NMTRLCAEIRKVLPPSVPVGVQILS-GCN-KAALATAQAAGLDFIRAESFVFGHMADEGLMNAQAGPLLRYRKQIGADNV 154 (251)
Q Consensus 77 a~~~~i~~vr~~~~~~~P~Gvn~~~-N~~-~~~~~ia~a~g~~Fir~~~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i 154 (251)
.+.+.++++|+.++ .|+++|++. |+. ......+...|.+++..+. | ...++.+..++.+ +
T Consensus 50 ~~~~~i~~i~~~~~--~p~gvnl~~~~~~~~~~~~~a~~~g~d~V~~~~---------g----~p~~~i~~l~~~g---~ 111 (332)
T 2z6i_A 50 VVKANIDKIKSLTD--KPFGVNIMLLSPFVEDIVDLVIEEGVKVVTTGA---------G----NPSKYMERFHEAG---I 111 (332)
T ss_dssp HHHHHHHHHHHHCC--SCEEEEECTTSTTHHHHHHHHHHTTCSEEEECS---------S----CGGGTHHHHHHTT---C
T ss_pred HHHHHHHHHHHhcC--CCEEEEecCCCCCHHHHHHHHHHCCCCEEEECC---------C----ChHHHHHHHHHcC---C
Confidence 45677888888877 699999998 442 2446677778888888641 1 1234444444433 3
Q ss_pred hhhhhhHhhccCCCCCCcccHHHHHHHhhhccccEEEecCCCCCC----CCCHHHHHHHHhcCCCCEEEecCC-ChHhHH
Q psy9039 155 LVFTDIKKKHSSHAITADVDITETAKAASFFLSDGLIITGNATGD----PADVSQLMSVKNAVDLPILIGSGV-TSDNVE 229 (251)
Q Consensus 155 ~i~a~v~~k~~~~~~~~~~~i~~~a~~a~~~~~D~v~VTG~~~g~----~~~~~~l~~vr~~~~~PV~vG~GI-~~~~v~ 229 (251)
+++..+ ...+.++.+...|+|+++++|..+|. ..++++++++++.+++||++.||| +++++.
T Consensus 112 ~v~~~v-------------~~~~~a~~~~~~GaD~i~v~g~~~GG~~g~~~~~~ll~~i~~~~~iPViaaGGI~~~~~~~ 178 (332)
T 2z6i_A 112 IVIPVV-------------PSVALAKRMEKIGADAVIAEGMEAGGHIGKLTTMTLVRQVATAISIPVIAAGGIADGEGAA 178 (332)
T ss_dssp EEEEEE-------------SSHHHHHHHHHTTCSCEEEECTTSSEECCSSCHHHHHHHHHHHCSSCEEEESSCCSHHHHH
T ss_pred eEEEEe-------------CCHHHHHHHHHcCCCEEEEECCCCCCCCCCccHHHHHHHHHHhcCCCEEEECCCCCHHHHH
Confidence 443211 11234555666799999998764432 344688999999999999999999 599999
Q ss_pred Hhhc--CCEEEEeceEeecCe
Q psy9039 230 HYMT--ADALIIGSHFKQGGR 248 (251)
Q Consensus 230 ~~~~--ADGvIVGS~~~~~g~ 248 (251)
+++. ||||.+||+|..+-.
T Consensus 179 ~al~~GAdgV~vGs~~l~~~e 199 (332)
T 2z6i_A 179 AGFMLGAEAVQVGTRFVVAKE 199 (332)
T ss_dssp HHHHTTCSEEEECHHHHTBTT
T ss_pred HHHHcCCCEEEecHHHhcCcc
Confidence 9886 999999999987643
|
| >2gjl_A Hypothetical protein PA1024; 2-nitropropane dioxygenase, 2-nitropropane, FMN, oxidoreduct; HET: FMN; 2.00A {Pseudomonas aeruginosa PAO1} PDB: 2gjn_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=2.3e-10 Score=103.38 Aligned_cols=140 Identities=19% Similarity=0.255 Sum_probs=98.3
Q ss_pred HHHHHHHHHHHHhCCCCccEEEEEeeC-----Ch-HHHHHHHHHcCccceecccccccccCCCceeecCcchhHHHHHhc
Q psy9039 76 ANMTRLCAEIRKVLPPSVPVGVQILSG-----CN-KAALATAQAAGLDFIRAESFVFGHMADEGLMNAQAGPLLRYRKQI 149 (251)
Q Consensus 76 aa~~~~i~~vr~~~~~~~P~Gvn~~~N-----~~-~~~~~ia~a~g~~Fir~~~~~~~~~~~~Gli~~da~e~~~~r~~l 149 (251)
+.+.+.++++|+.++ .|+++|++.| +. ......+...|++++..+. | +..++.+..++.
T Consensus 53 ~~l~~~i~~i~~~~~--~p~~v~l~v~~~~~~~~~~~~~~~~~~~g~d~V~~~~---------g----~p~~~~~~l~~~ 117 (328)
T 2gjl_A 53 EALAAEIARCRELTD--RPFGVNLTLLPTQKPVPYAEYRAAIIEAGIRVVETAG---------N----DPGEHIAEFRRH 117 (328)
T ss_dssp HHHHHHHHHHHHHCS--SCCEEEEEECCCSSCCCHHHHHHHHHHTTCCEEEEEE---------S----CCHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcC--CCeEEEEeccccccCccHHHHHHHHHhcCCCEEEEcC---------C----CcHHHHHHHHHc
Confidence 346677888998877 7999999998 22 2456777778888887531 1 123455544444
Q ss_pred CCCcchhhhhhHhhccCCCCCCcccHHHHHHHhhhccccEEEecCCCCC----C--CCCHHHHHHHHhcCCCCEEEecCC
Q psy9039 150 GADNVLVFTDIKKKHSSHAITADVDITETAKAASFFLSDGLIITGNATG----D--PADVSQLMSVKNAVDLPILIGSGV 223 (251)
Q Consensus 150 ~~~~i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~~~~~D~v~VTG~~~g----~--~~~~~~l~~vr~~~~~PV~vG~GI 223 (251)
+ ++++..+ +..+.++.+...|+|+++++|...| . ..++++++++++.+++||+++|||
T Consensus 118 g---i~vi~~v-------------~t~~~a~~~~~~GaD~i~v~g~~~GG~~G~~~~~~~~~l~~v~~~~~iPviaaGGI 181 (328)
T 2gjl_A 118 G---VKVIHKC-------------TAVRHALKAERLGVDAVSIDGFECAGHPGEDDIPGLVLLPAAANRLRVPIIASGGF 181 (328)
T ss_dssp T---CEEEEEE-------------SSHHHHHHHHHTTCSEEEEECTTCSBCCCSSCCCHHHHHHHHHTTCCSCEEEESSC
T ss_pred C---CCEEeeC-------------CCHHHHHHHHHcCCCEEEEECCCCCcCCCCccccHHHHHHHHHHhcCCCEEEECCC
Confidence 3 3444211 1123345555679999999875433 2 134688999999899999999999
Q ss_pred -ChHhHHHhhc--CCEEEEeceEeec
Q psy9039 224 -TSDNVEHYMT--ADALIIGSHFKQG 246 (251)
Q Consensus 224 -~~~~v~~~~~--ADGvIVGS~~~~~ 246 (251)
+++++.+++. ||||+|||+|..+
T Consensus 182 ~~~~~v~~al~~GAdgV~vGs~~~~~ 207 (328)
T 2gjl_A 182 ADGRGLVAALALGADAINMGTRFLAT 207 (328)
T ss_dssp CSHHHHHHHHHHTCSEEEESHHHHTS
T ss_pred CCHHHHHHHHHcCCCEEEECHHHHcC
Confidence 6999999886 9999999999765
|
| >2fli_A Ribulose-phosphate 3-epimerase; (beta/alpha)8-barrel, D- xylitol 5-phosphate, isomerase; HET: DX5; 1.80A {Streptococcus pyogenes} SCOP: c.1.2.2 | Back alignment and structure |
|---|
Probab=99.08 E-value=6.4e-11 Score=100.54 Aligned_cols=188 Identities=15% Similarity=0.173 Sum_probs=110.3
Q ss_pred eecccccccCCCCCCCcchHHHHHHHHHhhCCCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCC
Q psy9039 12 MHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPP 91 (251)
Q Consensus 12 ~~~~p~~~~~pG~P~~~~~~~~i~~~a~~~a~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~ 91 (251)
+.+.|++.+ +|+ ....+.+ +.+.++|+ |.+.+--+- -+|..-...|+ ..++++|+.++
T Consensus 4 ~~~~~~i~a--~D~--~~~~~~~--------~~~~~~G~-~~i~~~~~d-g~~~~~~~~g~-------~~i~~i~~~~~- 61 (220)
T 2fli_A 4 LKIAPSILA--ADY--ANFASEL--------ARIEETDA-EYVHIDIMD-GQFVPNISFGA-------DVVASMRKHSK- 61 (220)
T ss_dssp CEEEEBGGG--SCG--GGHHHHH--------HHHHHTTC-CEEEEEEEB-SSSSSCBCBCH-------HHHHHHHTTCC-
T ss_pred cEEEEEEEe--CCH--HHHHHHH--------HHHHHcCC-CEEEEEeec-CCCCCccccCH-------HHHHHHHHhCC-
Confidence 346799999 887 2223344 44567899 987653222 23332222343 45667787776
Q ss_pred CccEEEEEeeCChHHHHHHHHHcCccceecccccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHhhccCCCCCC
Q psy9039 92 SVPVGVQILSGCNKAALATAQAAGLDFIRAESFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSSHAITA 171 (251)
Q Consensus 92 ~~P~Gvn~~~N~~~~~~~ia~a~g~~Fir~~~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~k~~~~~~~~ 171 (251)
.|+.+.++.|++......+...|++++...... .....+..+..++.+. ++.-.+.+. ++
T Consensus 62 -~~~~v~l~v~d~~~~i~~~~~~gad~v~vh~~~----------~~~~~~~~~~~~~~g~---~i~~~~~~~------t~ 121 (220)
T 2fli_A 62 -LVFDCHLMVVDPERYVEAFAQAGADIMTIHTES----------TRHIHGALQKIKAAGM---KAGVVINPG------TP 121 (220)
T ss_dssp -SEEEEEEESSSGGGGHHHHHHHTCSEEEEEGGG----------CSCHHHHHHHHHHTTS---EEEEEECTT------SC
T ss_pred -CCEEEEEeecCHHHHHHHHHHcCCCEEEEccCc----------cccHHHHHHHHHHcCC---cEEEEEcCC------CC
Confidence 699999998875445677778888888753100 0122334454444443 232112111 22
Q ss_pred cccHHHHHHHhhhccccEEEe--cC-CCCCCC--C-CHHHHHHHHhcC-----CCCEEEecCCChHhHHHhhc--CCEEE
Q psy9039 172 DVDITETAKAASFFLSDGLII--TG-NATGDP--A-DVSQLMSVKNAV-----DLPILIGSGVTSDNVEHYMT--ADALI 238 (251)
Q Consensus 172 ~~~i~~~a~~a~~~~~D~v~V--TG-~~~g~~--~-~~~~l~~vr~~~-----~~PV~vG~GI~~~~v~~~~~--ADGvI 238 (251)
.+.+... ..++|.+.+ ++ ...|.. + ..+.++++|+.. ++|+++.|||+++|+.++.+ |||++
T Consensus 122 ~e~~~~~-----~~~~d~vl~~~~~~g~~g~~~~~~~~~~i~~~~~~~~~~~~~~~i~v~GGI~~~~~~~~~~~Gad~vv 196 (220)
T 2fli_A 122 ATALEPL-----LDLVDQVLIMTVNPGFGGQAFIPECLEKVATVAKWRDEKGLSFDIEVDGGVDNKTIRACYEAGANVFV 196 (220)
T ss_dssp GGGGGGG-----TTTCSEEEEESSCTTCSSCCCCGGGHHHHHHHHHHHHHTTCCCEEEEESSCCTTTHHHHHHHTCCEEE
T ss_pred HHHHHHH-----HhhCCEEEEEEECCCCcccccCHHHHHHHHHHHHHHHhcCCCceEEEECcCCHHHHHHHHHcCCCEEE
Confidence 2222111 134777633 21 112221 1 236677777655 79999999999999999886 99999
Q ss_pred EeceEeec
Q psy9039 239 IGSHFKQG 246 (251)
Q Consensus 239 VGS~~~~~ 246 (251)
|||++.+.
T Consensus 197 vGsai~~~ 204 (220)
T 2fli_A 197 AGSYLFKA 204 (220)
T ss_dssp ESHHHHTS
T ss_pred EChHHhCC
Confidence 99998764
|
| >3bw2_A 2-nitropropane dioxygenase; TIM barrel, oxidoreductase; HET: FMN; 2.10A {Streptomyces ansochromogenes} PDB: 3bw4_A* 3bw3_A* | Back alignment and structure |
|---|
Probab=99.04 E-value=6.2e-10 Score=102.24 Aligned_cols=71 Identities=27% Similarity=0.445 Sum_probs=56.4
Q ss_pred HHHHhhhccccEEEecCCCC----CCC----------CC-HHHHHHHHhcCCCCEEEecCC-ChHhHHHhhc--CCEEEE
Q psy9039 178 TAKAASFFLSDGLIITGNAT----GDP----------AD-VSQLMSVKNAVDLPILIGSGV-TSDNVEHYMT--ADALII 239 (251)
Q Consensus 178 ~a~~a~~~~~D~v~VTG~~~----g~~----------~~-~~~l~~vr~~~~~PV~vG~GI-~~~~v~~~~~--ADGvIV 239 (251)
.++.+...|+|+++++|... +.. .. +++++++++.+++||++.||| +++++.+++. ||||.+
T Consensus 157 ~a~~a~~~GaD~i~v~g~~~GGh~g~~~~~~~~~~~~~~~~~~l~~i~~~~~iPViaaGGI~~~~~~~~~l~~GAd~V~v 236 (369)
T 3bw2_A 157 EARAVEAAGADAVIAQGVEAGGHQGTHRDSSEDDGAGIGLLSLLAQVREAVDIPVVAAGGIMRGGQIAAVLAAGADAAQL 236 (369)
T ss_dssp HHHHHHHTTCSEEEEECTTCSEECCCSSCCGGGTTCCCCHHHHHHHHHHHCSSCEEEESSCCSHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHcCCCEEEEeCCCcCCcCCCcccccccccccccHHHHHHHHHHhcCceEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 35666667999999976432 211 23 678899998889999999999 8999999986 999999
Q ss_pred eceEeecCe
Q psy9039 240 GSHFKQGGR 248 (251)
Q Consensus 240 GS~~~~~g~ 248 (251)
||+|..+-+
T Consensus 237 Gs~~~~~~e 245 (369)
T 3bw2_A 237 GTAFLATDE 245 (369)
T ss_dssp SHHHHTSTT
T ss_pred ChHHhCCcc
Confidence 999986543
|
| >1qo2_A Molecule: N-((5-phosphoribosyl)-formimino)-5-aminoimidazol- 4-carboxamid ribonucleotid...; isomerase, histidine biosynthesis; 1.85A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2cff_A 2w79_A | Back alignment and structure |
|---|
Probab=99.03 E-value=1.6e-10 Score=99.74 Aligned_cols=177 Identities=12% Similarity=0.142 Sum_probs=112.6
Q ss_pred CCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHHHHHHHHcCccceecc
Q psy9039 43 PPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQAAGLDFIRAE 122 (251)
Q Consensus 43 ~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g~~Fir~~ 122 (251)
+.+.++|+ |.|.+.+... ..+ ..+ .....+++++ .++ +|+.++...++ ......+...|++.+...
T Consensus 37 ~~~~~~Ga-d~i~v~d~~~---~~~-~~~-----~~~~~i~~i~-~~~--ipvi~~Ggi~~-~~~~~~~~~~Gad~V~lg 102 (241)
T 1qo2_A 37 EKLIEEGF-TLIHVVDLSN---AIE-NSG-----ENLPVLEKLS-EFA--EHIQIGGGIRS-LDYAEKLRKLGYRRQIVS 102 (241)
T ss_dssp HHHHHTTC-CCEEEEEHHH---HHH-CCC-----TTHHHHHHGG-GGG--GGEEEESSCCS-HHHHHHHHHTTCCEEEEC
T ss_pred HHHHHcCC-CEEEEecccc---ccc-CCc-----hhHHHHHHHH-hcC--CcEEEECCCCC-HHHHHHHHHCCCCEEEEC
Confidence 66778999 9998643210 000 001 1245667777 667 89999999988 555555666777666542
Q ss_pred cccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhH---h-hccCCCCCCcccHHHHHHHhhhccccEEEecCCCC-
Q psy9039 123 SFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIK---K-KHSSHAITADVDITETAKAASFFLSDGLIITGNAT- 197 (251)
Q Consensus 123 ~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~---~-k~~~~~~~~~~~i~~~a~~a~~~~~D~v~VTG~~~- 197 (251)
. . ...+...+.+. ++++ +.+.+-.++. + .||..- .++.+..+.++.+...|++.+++|+...
T Consensus 103 ----~-----~-~l~~p~~~~~~-~~~g-~~i~~~~d~~~~~v~~~g~~~-~~~~~~~e~~~~~~~~G~~~i~~t~~~~~ 169 (241)
T 1qo2_A 103 ----S-----K-VLEDPSFLKSL-REID-VEPVFSLDTRGGRVAFKGWLA-EEEIDPVSLLKRLKEYGLEEIVHTEIEKD 169 (241)
T ss_dssp ----H-----H-HHHCTTHHHHH-HTTT-CEEEEEEEEETTEECCTTCSS-CSCCCHHHHHHHHHTTTCCEEEEEETTHH
T ss_pred ----c-----h-HhhChHHHHHH-HHcC-CcEEEEEEecCCEEEECCcee-cCCCCHHHHHHHHHhCCCCEEEEEeeccc
Confidence 0 0 11223345555 6666 3433322221 0 122111 1223556667777778999999988532
Q ss_pred C--CCCCHHHHHHHHhcCCCCEEEecCC-ChHhHHHhh-------c-CCEEEEeceEeec
Q psy9039 198 G--DPADVSQLMSVKNAVDLPILIGSGV-TSDNVEHYM-------T-ADALIIGSHFKQG 246 (251)
Q Consensus 198 g--~~~~~~~l~~vr~~~~~PV~vG~GI-~~~~v~~~~-------~-ADGvIVGS~~~~~ 246 (251)
+ ...+++.++++++.+++||+++||| +++++.+++ . |||++|||+|.+.
T Consensus 170 g~~~g~~~~~i~~l~~~~~iPvia~GGI~~~~d~~~~~~~~~~~~G~adgv~vgsal~~~ 229 (241)
T 1qo2_A 170 GTLQEHDFSLTKKIAIEAEVKVLAAGGISSENSLKTAQKVHTETNGLLKGVIVGRAFLEG 229 (241)
T ss_dssp HHTCCCCHHHHHHHHHHHTCEEEEESSCCSHHHHHHHHHHHHHTTTSEEEEEECHHHHTT
T ss_pred ccCCcCCHHHHHHHHHhcCCcEEEECCCCCHHHHHHHHhcccccCCeEeEEEeeHHHHcC
Confidence 2 2347899999999999999999999 589999886 3 7999999999764
|
| >3bo9_A Putative nitroalkan dioxygenase; TM0800, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 2PE; 2.71A {Thermotoga maritima MSB8} | Back alignment and structure |
|---|
Probab=99.03 E-value=1.3e-09 Score=98.61 Aligned_cols=140 Identities=18% Similarity=0.296 Sum_probs=98.9
Q ss_pred HHHHHHHHHHHHhCCCCccEEEEEee-CCh-HHHHHHHHHcCccceecccccccccCCCceeecCcchhHHHHHhcCCCc
Q psy9039 76 ANMTRLCAEIRKVLPPSVPVGVQILS-GCN-KAALATAQAAGLDFIRAESFVFGHMADEGLMNAQAGPLLRYRKQIGADN 153 (251)
Q Consensus 76 aa~~~~i~~vr~~~~~~~P~Gvn~~~-N~~-~~~~~ia~a~g~~Fir~~~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~ 153 (251)
+.+.+.++++|+.++ .|+++|++. |+. ...+.++...|++++..+. | +..++.+..++.+
T Consensus 63 ~~l~~~i~~i~~~~~--~p~gVnl~~~~~~~~~~~~~~~~~g~d~V~l~~---------g----~p~~~~~~l~~~g--- 124 (326)
T 3bo9_A 63 DDLRKAISELRQKTD--KPFGVNIILVSPWADDLVKVCIEEKVPVVTFGA---------G----NPTKYIRELKENG--- 124 (326)
T ss_dssp HHHHHHHHHHHTTCS--SCEEEEEETTSTTHHHHHHHHHHTTCSEEEEES---------S----CCHHHHHHHHHTT---
T ss_pred HHHHHHHHHHHHhcC--CCEEEEEeccCCCHHHHHHHHHHCCCCEEEECC---------C----CcHHHHHHHHHcC---
Confidence 447778889998876 699999998 332 3456777778888888531 1 1234444444443
Q ss_pred chhhhhhHhhccCCCCCCcccHHHHHHHhhhccccEEEecCCCCCC----CCCHHHHHHHHhcCCCCEEEecCC-ChHhH
Q psy9039 154 VLVFTDIKKKHSSHAITADVDITETAKAASFFLSDGLIITGNATGD----PADVSQLMSVKNAVDLPILIGSGV-TSDNV 228 (251)
Q Consensus 154 i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~~~~~D~v~VTG~~~g~----~~~~~~l~~vr~~~~~PV~vG~GI-~~~~v 228 (251)
++++.. .+..+.++.+...|+|+++++|...|. ..+++.+.++++.+++||++.||| +++++
T Consensus 125 ~~v~~~-------------v~s~~~a~~a~~~GaD~i~v~g~~~GG~~G~~~~~~ll~~i~~~~~iPviaaGGI~~~~dv 191 (326)
T 3bo9_A 125 TKVIPV-------------VASDSLARMVERAGADAVIAEGMESGGHIGEVTTFVLVNKVSRSVNIPVIAAGGIADGRGM 191 (326)
T ss_dssp CEEEEE-------------ESSHHHHHHHHHTTCSCEEEECTTSSEECCSSCHHHHHHHHHHHCSSCEEEESSCCSHHHH
T ss_pred CcEEEE-------------cCCHHHHHHHHHcCCCEEEEECCCCCccCCCccHHHHHHHHHHHcCCCEEEECCCCCHHHH
Confidence 344421 112334555666799999998754332 345688999998889999999999 59999
Q ss_pred HHhhc--CCEEEEeceEeec
Q psy9039 229 EHYMT--ADALIIGSHFKQG 246 (251)
Q Consensus 229 ~~~~~--ADGvIVGS~~~~~ 246 (251)
.+++. ||||.|||+|...
T Consensus 192 ~~al~~GA~gV~vGs~~~~~ 211 (326)
T 3bo9_A 192 AAAFALGAEAVQMGTRFVAS 211 (326)
T ss_dssp HHHHHHTCSEEEESHHHHTB
T ss_pred HHHHHhCCCEEEechHHHcC
Confidence 99986 9999999998754
|
| >1vzw_A Phosphoribosyl isomerase A; histidine biosynthesis, tryptophan biosynthesis; 1.8A {Streptomyces coelicolor} SCOP: c.1.2.1 PDB: 2vep_A 2x30_A | Back alignment and structure |
|---|
Probab=98.98 E-value=5.6e-10 Score=96.31 Aligned_cols=177 Identities=17% Similarity=0.172 Sum_probs=114.8
Q ss_pred CCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHHHHHHHHcCccceecc
Q psy9039 43 PPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQAAGLDFIRAE 122 (251)
Q Consensus 43 ~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g~~Fir~~ 122 (251)
+.+.++|+ |.|.+-++.+. |.... .. ..++++++.++ +|+-++...++ ......+...|++.+...
T Consensus 39 ~~~~~~Ga-d~i~v~~~d~~-~~~~~--------~~-~~i~~i~~~~~--ipv~v~ggI~~-~~~~~~~l~~Gad~V~lg 104 (244)
T 1vzw_A 39 LAWQRSGA-EWLHLVDLDAA-FGTGD--------NR-ALIAEVAQAMD--IKVELSGGIRD-DDTLAAALATGCTRVNLG 104 (244)
T ss_dssp HHHHHTTC-SEEEEEEHHHH-HTSCC--------CH-HHHHHHHHHCS--SEEEEESSCCS-HHHHHHHHHTTCSEEEEC
T ss_pred HHHHHcCC-CEEEEecCchh-hcCCC--------hH-HHHHHHHHhcC--CcEEEECCcCC-HHHHHHHHHcCCCEEEEC
Confidence 56678999 99988654321 21100 14 67788888888 89999988887 455666677788877653
Q ss_pred cccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhH----hhccCCCCCCcccHHHHHHHhhhccccEEEecCCCCC
Q psy9039 123 SFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIK----KKHSSHAITADVDITETAKAASFFLSDGLIITGNATG 198 (251)
Q Consensus 123 ~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~----~k~~~~~~~~~~~i~~~a~~a~~~~~D~v~VTG~~~g 198 (251)
. . ..++...+.+.++.+| ..+.+--++. ..|+..- .+. +..+.++.+...|+|.+++|+...+
T Consensus 105 ~----~------~l~~p~~~~~~~~~~g-~~~~~~l~~~~g~v~~~g~~~-~~~-~~~e~~~~~~~~G~~~i~~~~~~~~ 171 (244)
T 1vzw_A 105 T----A------ALETPEWVAKVIAEHG-DKIAVGLDVRGTTLRGRGWTR-DGG-DLYETLDRLNKEGCARYVVTDIAKD 171 (244)
T ss_dssp H----H------HHHCHHHHHHHHHHHG-GGEEEEEEEETTEECCSSSCC-CCC-BHHHHHHHHHHTTCCCEEEEEC---
T ss_pred c----h------HhhCHHHHHHHHHHcC-CcEEEEEEccCCEEEEcCccc-CCC-CHHHHHHHHHhCCCCEEEEeccCcc
Confidence 1 1 1123344566666665 2222211111 0122211 111 5566667776679999999885443
Q ss_pred C---CCCHHHHHHHHhcCCCCEEEecCCC-hHhHHHhhc-----CCEEEEeceEeec
Q psy9039 199 D---PADVSQLMSVKNAVDLPILIGSGVT-SDNVEHYMT-----ADALIIGSHFKQG 246 (251)
Q Consensus 199 ~---~~~~~~l~~vr~~~~~PV~vG~GI~-~~~v~~~~~-----ADGvIVGS~~~~~ 246 (251)
. ..+++.++++++.+++||++.|||+ ++++.++++ |||++|||+|..+
T Consensus 172 ~~~~g~~~~~~~~i~~~~~ipvia~GGI~~~~d~~~~~~~~~~Gadgv~vG~al~~~ 228 (244)
T 1vzw_A 172 GTLQGPNLELLKNVCAATDRPVVASGGVSSLDDLRAIAGLVPAGVEGAIVGKALYAK 228 (244)
T ss_dssp ----CCCHHHHHHHHHTCSSCEEEESCCCSHHHHHHHHTTGGGTEEEEEECHHHHTT
T ss_pred cccCCCCHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHhhccCCCceeeeeHHHHcC
Confidence 2 3468899999999999999999995 799998873 6999999998764
|
| >1xi3_A Thiamine phosphate pyrophosphorylase; structural genomics, southeast collaboratory for structural genomics, hyperthermophIle; 1.70A {Pyrococcus furiosus} SCOP: c.1.3.1 | Back alignment and structure |
|---|
Probab=98.95 E-value=5.8e-09 Score=87.73 Aligned_cols=67 Identities=16% Similarity=0.175 Sum_probs=51.3
Q ss_pred HHhhhccccEEEecC-----CCCCC-CCCHHHHHHHHhcCCCCEEEecCCChHhHHHhhc--CCEEEEeceEeec
Q psy9039 180 KAASFFLSDGLIITG-----NATGD-PADVSQLMSVKNAVDLPILIGSGVTSDNVEHYMT--ADALIIGSHFKQG 246 (251)
Q Consensus 180 ~~a~~~~~D~v~VTG-----~~~g~-~~~~~~l~~vr~~~~~PV~vG~GI~~~~v~~~~~--ADGvIVGS~~~~~ 246 (251)
..+...|+|++.+++ .+.+. ...++.++++++..++|++++|||+++|+.+++. +||++|||+|.+.
T Consensus 122 ~~~~~~g~d~i~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~pvia~GGI~~~nv~~~~~~Ga~gv~vgs~i~~~ 196 (215)
T 1xi3_A 122 LEAEKKGADYLGAGSVFPTKTKEDARVIGLEGLRKIVESVKIPVVAIGGINKDNAREVLKTGVDGIAVISAVMGA 196 (215)
T ss_dssp HHHHHHTCSEEEEECSSCC----CCCCCHHHHHHHHHHHCSSCEEEESSCCTTTHHHHHTTTCSEEEESHHHHTS
T ss_pred HHHHhcCCCEEEEcCCccCCCCCCCCCcCHHHHHHHHHhCCCCEEEECCcCHHHHHHHHHcCCCEEEEhHHHhCC
Confidence 344446899998743 33332 2346888999888899999999999999999886 9999999998754
|
| >3vk5_A MOEO5; TIM barrel, transferase; HET: FPQ; 1.39A {Streptomyces ghanaensis} PDB: 3vka_A* 3vkb_A* 3vkc_A* 3vkd_A* | Back alignment and structure |
|---|
Probab=98.94 E-value=7.3e-09 Score=91.75 Aligned_cols=69 Identities=13% Similarity=0.189 Sum_probs=55.2
Q ss_pred HHHHHhhhccccEEEecCCCCCCCCCHHHHHHHHhcC--CCCEEEecCC-ChHhHHHhhc--CCEEEEeceEeecC
Q psy9039 177 ETAKAASFFLSDGLIITGNATGDPADVSQLMSVKNAV--DLPILIGSGV-TSDNVEHYMT--ADALIIGSHFKQGG 247 (251)
Q Consensus 177 ~~a~~a~~~~~D~v~VTG~~~g~~~~~~~l~~vr~~~--~~PV~vG~GI-~~~~v~~~~~--ADGvIVGS~~~~~g 247 (251)
..++.+..+|...+-.-++. .....+.++++++.+ ++||++|||| |++++++++. ||+|+|||++++++
T Consensus 190 aYa~~gad~G~~lV~LD~~~--~~v~~e~V~~I~~~~~~~iPV~vGGGIrs~Eda~~ll~aGAD~VVVGSAav~d~ 263 (286)
T 3vk5_A 190 RYLHVARAFGFHMVYLYSRN--EHVPPEVVRHFRKGLGPDQVLFVSGNVRSGRQVTEYLDSGADYVGFAGALEQPD 263 (286)
T ss_dssp HHHHHHHHTTCSEEEEECSS--SCCCHHHHHHHHHHSCTTCEEEEESSCCSHHHHHHHHHTTCSEEEESGGGSSTT
T ss_pred HHHHHHHHcCCCEEEEcCCC--CcCCHHHHHHHHHhcCCCCCEEEEeCCCCHHHHHHHHHcCCCEEEECchhhcCC
Confidence 44445545566666665443 455679999999999 8999999999 7999999995 99999999999885
|
| >3jr2_A Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulonate-6-phosphate decarboxylase, ULAD, niaid,CSG bound, biosynthetic protein; HET: MSE; 1.80A {Vibrio cholerae} SCOP: c.1.2.0 PDB: 3ieb_A* | Back alignment and structure |
|---|
Probab=98.93 E-value=1e-09 Score=93.67 Aligned_cols=161 Identities=13% Similarity=0.150 Sum_probs=93.7
Q ss_pred CCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCCh-HHHHHHHHHcCccceeccccc
Q psy9039 47 PVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCN-KAALATAQAAGLDFIRAESFV 125 (251)
Q Consensus 47 ~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~-~~~~~ia~a~g~~Fir~~~~~ 125 (251)
++|+ |.+++ |+||... .|+ .+++++|+.+++ .|+.+.+..++. ......+...|++|+-.....
T Consensus 29 ~~~v-d~ie~----g~~~~~~--~G~-------~~i~~lr~~~~~-~~i~ld~~l~d~p~~~~~~~~~aGad~i~vh~~~ 93 (218)
T 3jr2_A 29 ASYV-DVIEV----GTILAFA--EGM-------KAVSTLRHNHPN-HILVCDMKTTDGGAILSRMAFEAGADWITVSAAA 93 (218)
T ss_dssp GGGC-SEEEE----CHHHHHH--HTT-------HHHHHHHHHCTT-SEEEEEEEECSCHHHHHHHHHHHTCSEEEEETTS
T ss_pred cCCc-eEEEe----CcHHHHh--cCH-------HHHHHHHHhCCC-CcEEEEEeecccHHHHHHHHHhcCCCEEEEecCC
Confidence 4589 99974 7777543 343 467888887543 488877776652 222344445666666543111
Q ss_pred ccccCCCceeecCcchhHHHHHhcCCCcch-hhhhhHhhccCCCCCCcccHHHHHHHhhhccccEEEe-cCCCC---CCC
Q psy9039 126 FGHMADEGLMNAQAGPLLRYRKQIGADNVL-VFTDIKKKHSSHAITADVDITETAKAASFFLSDGLII-TGNAT---GDP 200 (251)
Q Consensus 126 ~~~~~~~Gli~~da~e~~~~r~~l~~~~i~-i~a~v~~k~~~~~~~~~~~i~~~a~~a~~~~~D~v~V-TG~~~---g~~ 200 (251)
+ .....++.+..++.|..... ++. +. +.. .++.+...|+|.+++ +|... |..
T Consensus 94 ~---------~~~~~~~~~~~~~~g~~~~~d~l~--------~~-----T~~-~~~~~~~~g~d~v~~~~~~~~~~~g~~ 150 (218)
T 3jr2_A 94 H---------IATIAACKKVADELNGEIQIEIYG--------NW-----TMQ-DAKAWVDLGITQAIYHRSRDAELAGIG 150 (218)
T ss_dssp C---------HHHHHHHHHHHHHHTCEEEEECCS--------SC-----CHH-HHHHHHHTTCCEEEEECCHHHHHHTCC
T ss_pred C---------HHHHHHHHHHHHHhCCccceeeee--------cC-----CHH-HHHHHHHcCccceeeeeccccccCCCc
Confidence 0 00123344445555542111 221 11 222 233333348887654 44321 232
Q ss_pred CCHHHHHHHHhc--CCCCEEEecCCChHhHHHhhc--CCEEEEeceEee
Q psy9039 201 ADVSQLMSVKNA--VDLPILIGSGVTSDNVEHYMT--ADALIIGSHFKQ 245 (251)
Q Consensus 201 ~~~~~l~~vr~~--~~~PV~vG~GI~~~~v~~~~~--ADGvIVGS~~~~ 245 (251)
-..+.++++|+. .++|++++|||+++|+.++++ ||+++|||++.+
T Consensus 151 ~~~~~l~~i~~~~~~~~pi~v~GGI~~~~~~~~~~aGAd~vvvGsaI~~ 199 (218)
T 3jr2_A 151 WTTDDLDKMRQLSALGIELSITGGIVPEDIYLFEGIKTKTFIAGRALAG 199 (218)
T ss_dssp SCHHHHHHHHHHHHTTCEEEEESSCCGGGGGGGTTSCEEEEEESGGGSH
T ss_pred CCHHHHHHHHHHhCCCCCEEEECCCCHHHHHHHHHcCCCEEEEchhhcC
Confidence 234555666655 389999999999999999996 999999999864
|
| >2yw3_A 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deoxyphosphogluconate aldolase; structural genomics, NPPSFA; 1.67A {Thermus thermophilus} PDB: 2yw4_A | Back alignment and structure |
|---|
Probab=98.93 E-value=3.1e-09 Score=90.41 Aligned_cols=151 Identities=18% Similarity=0.194 Sum_probs=105.0
Q ss_pred CCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHHHHHHHHcCccceecc
Q psy9039 43 PPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQAAGLDFIRAE 122 (251)
Q Consensus 43 ~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g~~Fir~~ 122 (251)
+++.++|+ +.|++ .+..+ . ..+.++++|+ .+ ..+|..+..+ ......|.+.|++|+...
T Consensus 32 ~~l~~gGv-~~iel------~~k~~-----~----~~~~i~~~~~-~~--~~~gag~vl~--~d~~~~A~~~GAd~v~~~ 90 (207)
T 2yw3_A 32 RVLEEEGV-GALEI------TLRTE-----K----GLEALKALRK-SG--LLLGAGTVRS--PKEAEAALEAGAAFLVSP 90 (207)
T ss_dssp HHHHHTTC-CEEEE------ECSST-----H----HHHHHHHHTT-SS--CEEEEESCCS--HHHHHHHHHHTCSEEEES
T ss_pred HHHHHcCC-CEEEE------eCCCh-----H----HHHHHHHHhC-CC--CEEEeCeEee--HHHHHHHHHcCCCEEEcC
Confidence 66788999 99986 34433 1 2345566666 33 5788887664 467888999999998742
Q ss_pred cccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHhhccCCCCCCcccHHHHHHHhhhccccEEEecCCCCCCCC-
Q psy9039 123 SFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSSHAITADVDITETAKAASFFLSDGLIITGNATGDPA- 201 (251)
Q Consensus 123 ~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~~~~~D~v~VTG~~~g~~~- 201 (251)
+ ...++.+.+++++.+ ++- |.+ +..+ +..|...|+|++.+-. ....
T Consensus 91 ----------~----~d~~v~~~~~~~g~~---~i~------G~~------t~~e-~~~A~~~Gad~v~~fp---a~~~g 137 (207)
T 2yw3_A 91 ----------G----LLEEVAALAQARGVP---YLP------GVL------TPTE-VERALALGLSALKFFP---AEPFQ 137 (207)
T ss_dssp ----------S----CCHHHHHHHHHHTCC---EEE------EEC------SHHH-HHHHHHTTCCEEEETT---TTTTT
T ss_pred ----------C----CCHHHHHHHHHhCCC---EEe------cCC------CHHH-HHHHHHCCCCEEEEec---Ccccc
Confidence 0 124566777777752 210 111 2333 4555557999998832 1222
Q ss_pred CHHHHHHHHhcC-CCCEEEecCCChHhHHHhhc--CCEEEEeceEeecCe
Q psy9039 202 DVSQLMSVKNAV-DLPILIGSGVTSDNVEHYMT--ADALIIGSHFKQGGR 248 (251)
Q Consensus 202 ~~~~l~~vr~~~-~~PV~vG~GI~~~~v~~~~~--ADGvIVGS~~~~~g~ 248 (251)
..+.++++++.. ++|++.-|||+++|+.+++. ||++.|||+|.. ++
T Consensus 138 G~~~lk~l~~~~~~ipvvaiGGI~~~n~~~~l~aGa~~vavgSai~~-~d 186 (207)
T 2yw3_A 138 GVRVLRAYAEVFPEVRFLPTGGIKEEHLPHYAALPNLLAVGGSWLLQ-GN 186 (207)
T ss_dssp HHHHHHHHHHHCTTCEEEEBSSCCGGGHHHHHTCSSBSCEEESGGGS-SC
T ss_pred CHHHHHHHHhhCCCCcEEEeCCCCHHHHHHHHhCCCcEEEEehhhhC-CC
Confidence 357889999887 89999999999999999997 999999999876 44
|
| >3ajx_A 3-hexulose-6-phosphate synthase; HPS, OMPDC suprafamily, LYA; 1.60A {Mycobacterium gastri} | Back alignment and structure |
|---|
Probab=98.91 E-value=1.4e-09 Score=91.46 Aligned_cols=175 Identities=14% Similarity=0.131 Sum_probs=98.6
Q ss_pred CCCcchHHHHHHHHHhhCCCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEE--EEeeC
Q psy9039 25 PEITANMTRLCAEIRKVLPPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGV--QILSG 102 (251)
Q Consensus 25 P~~~~~~~~i~~~a~~~a~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gv--n~~~N 102 (251)
|+.+...+.+ +.+.+ |+ |.++| +.||+.+ .||. .++++|+.+++ .|+-+ +++ |
T Consensus 10 ~~~~~~~~~~--------~~~~~-~v-~~iev----~~~~~~~--~g~~-------~i~~l~~~~~~-~~i~~~l~~~-d 64 (207)
T 3ajx_A 10 LSTEAALELA--------GKVAE-YV-DIIEL----GTPLIKA--EGLS-------VITAVKKAHPD-KIVFADMKTM-D 64 (207)
T ss_dssp SCHHHHHHHH--------HHHGG-GC-SEEEE----CHHHHHH--HCTH-------HHHHHHHHSTT-SEEEEEEEEC-S
T ss_pred CCHHHHHHHH--------HHhhc-cC-CEEEE----CcHHHHh--hCHH-------HHHHHHHhCCC-CeEEEEEEec-C
Confidence 5555555555 66777 89 99976 6776532 5655 46777777632 57665 543 4
Q ss_pred ChHHHHHHHHHcCccceecccccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHhhccCCCCCCcccHHHHHHHh
Q psy9039 103 CNKAALATAQAAGLDFIRAESFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSSHAITADVDITETAKAA 182 (251)
Q Consensus 103 ~~~~~~~ia~a~g~~Fir~~~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~k~~~~~~~~~~~i~~~a~~a 182 (251)
.+......+...|++++......+ + ....++.++.++.+.. +-+ .+ ++ . .+..+.++.+
T Consensus 65 i~~~~~~~a~~~Gad~v~vh~~~~----~-----~~~~~~~~~~~~~g~~-~gv--~~---~s-----~-~~p~~~~~~~ 123 (207)
T 3ajx_A 65 AGELEADIAFKAGADLVTVLGSAD----D-----STIAGAVKAAQAHNKG-VVV--DL---IG-----I-EDKATRAQEV 123 (207)
T ss_dssp CHHHHHHHHHHTTCSEEEEETTSC----H-----HHHHHHHHHHHHHTCE-EEE--EC---TT-----C-SSHHHHHHHH
T ss_pred ccHHHHHHHHhCCCCEEEEeccCC----h-----HHHHHHHHHHHHcCCc-eEE--EE---ec-----C-CChHHHHHHH
Confidence 233335667778888876431111 0 0122344444444542 111 01 01 1 0122223333
Q ss_pred hhccccEE-Ee---cCCCCCCCCCHHHHHHHHhcCCCCEEEecCCChHhHHHhhc--CCEEEEeceEeec
Q psy9039 183 SFFLSDGL-II---TGNATGDPADVSQLMSVKNAVDLPILIGSGVTSDNVEHYMT--ADALIIGSHFKQG 246 (251)
Q Consensus 183 ~~~~~D~v-~V---TG~~~g~~~~~~~l~~vr~~~~~PV~vG~GI~~~~v~~~~~--ADGvIVGS~~~~~ 246 (251)
...++|.+ .. ++...|.....+.++++++. ++|+++.|||+++|+.++++ ||+++|||++.+.
T Consensus 124 ~~~g~d~v~~~~~~~~~~~g~~~~~~~i~~~~~~-~~pi~v~GGI~~~~~~~~~~aGad~vvvGsaI~~~ 192 (207)
T 3ajx_A 124 RALGAKFVEMHAGLDEQAKPGFDLNGLLAAGEKA-RVPFSVAGGVKVATIPAVQKAGAEVAVAGGAIYGA 192 (207)
T ss_dssp HHTTCSEEEEECCHHHHTSTTCCTHHHHHHHHHH-TSCEEEESSCCGGGHHHHHHTTCSEEEESHHHHTS
T ss_pred HHhCCCEEEEEecccccccCCCchHHHHHHhhCC-CCCEEEECCcCHHHHHHHHHcCCCEEEEeeeccCC
Confidence 33478888 33 32223332211445544443 79999999999999999886 9999999998653
|
| >2v82_A 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; lyase, kdpgal; HET: KDP; 2.1A {Escherichia coli} PDB: 2v81_A* | Back alignment and structure |
|---|
Probab=98.91 E-value=3.3e-09 Score=89.63 Aligned_cols=151 Identities=14% Similarity=0.133 Sum_probs=99.4
Q ss_pred CCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEE--EEeeCChHHHHHHHHHcCcccee
Q psy9039 43 PPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGV--QILSGCNKAALATAQAAGLDFIR 120 (251)
Q Consensus 43 ~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gv--n~~~N~~~~~~~ia~a~g~~Fir 120 (251)
+.+.++|+ |.|++.+. ++ . ..+.++++++.++ .|+-+ ....+ ......+...|++|+.
T Consensus 26 ~~~~~~G~-~~i~l~~~------~~-----~----~~~~i~~i~~~~~--~~l~vg~g~~~~--~~~i~~a~~~Gad~V~ 85 (212)
T 2v82_A 26 GAVIDAGF-DAVEIPLN------SP-----Q----WEQSIPAIVDAYG--DKALIGAGTVLK--PEQVDALARMGCQLIV 85 (212)
T ss_dssp HHHHHHTC-CEEEEETT------ST-----T----HHHHHHHHHHHHT--TTSEEEEECCCS--HHHHHHHHHTTCCEEE
T ss_pred HHHHHCCC-CEEEEeCC------Ch-----h----HHHHHHHHHHhCC--CCeEEEeccccC--HHHHHHHHHcCCCEEE
Confidence 56778999 99987322 11 1 1245566666555 45433 44443 3467888889999987
Q ss_pred cccccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHhhccCCCCCCcccHHHHHHHhhhccccEEEecCCCCCCC
Q psy9039 121 AESFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSSHAITADVDITETAKAASFFLSDGLIITGNATGDP 200 (251)
Q Consensus 121 ~~~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~~~~~D~v~VTG~~~g~~ 200 (251)
.. . ...++.+.+++++. +++. +.+ +..+ +..+...|+|++.+-- + ..
T Consensus 86 ~~----~----------~~~~~~~~~~~~g~---~~~~------g~~------t~~e-~~~a~~~G~d~v~v~~--t-~~ 132 (212)
T 2v82_A 86 TP----N----------IHSEVIRRAVGYGM---TVCP------GCA------TATE-AFTALEAGAQALKIFP--S-SA 132 (212)
T ss_dssp CS----S----------CCHHHHHHHHHTTC---EEEC------EEC------SHHH-HHHHHHTTCSEEEETT--H-HH
T ss_pred eC----C----------CCHHHHHHHHHcCC---CEEe------ecC------CHHH-HHHHHHCCCCEEEEec--C-CC
Confidence 32 1 12346677888775 2221 111 2233 3445557899998721 1 12
Q ss_pred CCHHHHHHHHhcCC--CCEEEecCCChHhHHHhhc--CCEEEEeceEeec
Q psy9039 201 ADVSQLMSVKNAVD--LPILIGSGVTSDNVEHYMT--ADALIIGSHFKQG 246 (251)
Q Consensus 201 ~~~~~l~~vr~~~~--~PV~vG~GI~~~~v~~~~~--ADGvIVGS~~~~~ 246 (251)
..++.++++++..+ +||++.|||+++|+.+++. |||++|||+|.+.
T Consensus 133 ~g~~~~~~l~~~~~~~ipvia~GGI~~~~i~~~~~~Ga~gv~vGsai~~~ 182 (212)
T 2v82_A 133 FGPQYIKALKAVLPSDIAVFAVGGVTPENLAQWIDAGCAGAGLGSDLYRA 182 (212)
T ss_dssp HCHHHHHHHHTTSCTTCEEEEESSCCTTTHHHHHHHTCSEEEECTTTCCT
T ss_pred CCHHHHHHHHHhccCCCeEEEeCCCCHHHHHHHHHcCCCEEEEChHHhCC
Confidence 24688899988875 9999999999999999986 9999999999874
|
| >2y88_A Phosphoribosyl isomerase A; aromatic amino acid biosynthesis, TIM-barrel, His biosynthesis, tryptophan biosynthesis; HET: 2ER; 1.33A {Mycobacterium tuberculosis} PDB: 2y89_A 2y85_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=2.5e-09 Score=92.02 Aligned_cols=178 Identities=18% Similarity=0.169 Sum_probs=116.0
Q ss_pred CCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHHHHHHHHcCccceecc
Q psy9039 43 PPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQAAGLDFIRAE 122 (251)
Q Consensus 43 ~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g~~Fir~~ 122 (251)
+.+.++|+ |.|.+-.+.+. |.. .+ .. ..++++++.++ +|+-++...++ ......+...|++.+...
T Consensus 38 ~~~~~~Ga-d~i~v~~~d~~-~~~----~~----~~-~~i~~i~~~~~--ipv~v~ggi~~-~~~~~~~l~~Gad~V~lg 103 (244)
T 2y88_A 38 LGWQRDGA-EWIHLVDLDAA-FGR----GS----NH-ELLAEVVGKLD--VQVELSGGIRD-DESLAAALATGCARVNVG 103 (244)
T ss_dssp HHHHHTTC-SEEEEEEHHHH-TTS----CC----CH-HHHHHHHHHCS--SEEEEESSCCS-HHHHHHHHHTTCSEEEEC
T ss_pred HHHHHcCC-CEEEEEcCccc-ccC----CC----hH-HHHHHHHHhcC--CcEEEECCCCC-HHHHHHHHHcCCCEEEEC
Confidence 46788999 99998654321 211 11 13 67788888888 89999988877 455666677888887753
Q ss_pred cccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhH-------hh-ccCCCCCCcccHHHHHHHhhhccccEEEecC
Q psy9039 123 SFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIK-------KK-HSSHAITADVDITETAKAASFFLSDGLIITG 194 (251)
Q Consensus 123 ~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~-------~k-~~~~~~~~~~~i~~~a~~a~~~~~D~v~VTG 194 (251)
. . ...+...+.+.++.++. .+.+--++. ++ |+.. ....+..+.++.+...|+|.+++|+
T Consensus 104 ~----~------~l~~p~~~~~~~~~~g~-~~~~~ld~~~~~~~~~v~~~g~~--~~~~~~~e~~~~~~~~G~~~i~~~~ 170 (244)
T 2y88_A 104 T----A------ALENPQWCARVIGEHGD-QVAVGLDVQIIDGEHRLRGRGWE--TDGGDLWDVLERLDSEGCSRFVVTD 170 (244)
T ss_dssp H----H------HHHCHHHHHHHHHHHGG-GEEEEEEEEEETTEEEEEEGGGT--EEEEEHHHHHHHHHHTTCCCEEEEE
T ss_pred c----h------HhhChHHHHHHHHHcCC-CEEEEEeccccCCCCEEEECCcc--CCCCCHHHHHHHHHhCCCCEEEEEe
Confidence 1 1 11233445566666652 221111111 00 1111 0011456666777767999999988
Q ss_pred CCCC---CCCCHHHHHHHHhcCCCCEEEecCCC-hHhHHHhhc-----CCEEEEeceEeecC
Q psy9039 195 NATG---DPADVSQLMSVKNAVDLPILIGSGVT-SDNVEHYMT-----ADALIIGSHFKQGG 247 (251)
Q Consensus 195 ~~~g---~~~~~~~l~~vr~~~~~PV~vG~GI~-~~~v~~~~~-----ADGvIVGS~~~~~g 247 (251)
...+ ...+++.++++++.+++||++.|||+ ++++.+++. |||++|||+|..+.
T Consensus 171 ~~~~~~~~g~~~~~~~~l~~~~~ipvia~GGI~~~~d~~~~~~~~~~Gad~v~vG~al~~~~ 232 (244)
T 2y88_A 171 ITKDGTLGGPNLDLLAGVADRTDAPVIASGGVSSLDDLRAIATLTHRGVEGAIVGKALYARR 232 (244)
T ss_dssp TTTTTTTSCCCHHHHHHHHTTCSSCEEEESCCCSHHHHHHHHTTGGGTEEEEEECHHHHTTS
T ss_pred cCCccccCCCCHHHHHHHHHhCCCCEEEECCCCCHHHHHHHHhhccCCCCEEEEcHHHHCCC
Confidence 5432 23478899999998999999999995 799998873 69999999987653
|
| >1yxy_A Putative N-acetylmannosamine-6-phosphate 2-epimer; structural genomics, epimerase, PSI, structure initiative; 1.60A {Streptococcus pyogenes} SCOP: c.1.2.5 | Back alignment and structure |
|---|
Probab=98.89 E-value=9.9e-09 Score=87.98 Aligned_cols=176 Identities=14% Similarity=0.219 Sum_probs=106.8
Q ss_pred cCCCCCCCc-c--hHHHHHHHHHhhCCCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccE-
Q psy9039 20 EAESGPEIT-A--NMTRLCAEIRKVLPPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPV- 95 (251)
Q Consensus 20 ~~pG~P~~~-~--~~~~i~~~a~~~a~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~- 95 (251)
+.++.|.+. . ++..+. +++.++|+ +++.+- +| ..++++|+.++ +|+
T Consensus 24 ~~~~~p~~~~~~~~~~~~a-------~~~~~~G~-~~i~~~-------------~~-------~~i~~i~~~~~--~p~i 73 (234)
T 1yxy_A 24 ALPGEPLYSETGGIMPLMA-------KAAQEAGA-VGIRAN-------------SV-------RDIKEIQAITD--LPII 73 (234)
T ss_dssp CCTTSTTCCTTCCSHHHHH-------HHHHHHTC-SEEEEE-------------SH-------HHHHHHHTTCC--SCEE
T ss_pred CCCCCCCcCCccchHHHHH-------HHHHHCCC-cEeecC-------------CH-------HHHHHHHHhCC--CCEE
Confidence 445677775 2 444443 55667899 999751 22 34778888887 798
Q ss_pred EEE--------EeeCChHHHHHHHHHcCccceecccccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHhhccCC
Q psy9039 96 GVQ--------ILSGCNKAALATAQAAGLDFIRAESFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSSH 167 (251)
Q Consensus 96 Gvn--------~~~N~~~~~~~ia~a~g~~Fir~~~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~k~~~~ 167 (251)
+++ ++.+.+......+...|++++........ ..+|. ...++.+..++.. .+..++.+ .
T Consensus 74 ~~~~~~~~~~~~~i~~~~~~i~~~~~~Gad~V~l~~~~~~--~~~~~---~~~~~i~~i~~~~-~~~~v~~~------~- 140 (234)
T 1yxy_A 74 GIIKKDYPPQEPFITATMTEVDQLAALNIAVIAMDCTKRD--RHDGL---DIASFIRQVKEKY-PNQLLMAD------I- 140 (234)
T ss_dssp EECBCCCTTSCCCBSCSHHHHHHHHTTTCSEEEEECCSSC--CTTCC---CHHHHHHHHHHHC-TTCEEEEE------C-
T ss_pred eeEcCCCCccccccCChHHHHHHHHHcCCCEEEEcccccC--CCCCc---cHHHHHHHHHHhC-CCCeEEEe------C-
Confidence 332 23333355667777888888875321100 00000 1133444444332 13333321 1
Q ss_pred CCCCcccHHHHHHHhhhccccEE--EecCCCCC----CCCCHHHHHHHHhcCCCCEEEecCCC-hHhHHHhhc--CCEEE
Q psy9039 168 AITADVDITETAKAASFFLSDGL--IITGNATG----DPADVSQLMSVKNAVDLPILIGSGVT-SDNVEHYMT--ADALI 238 (251)
Q Consensus 168 ~~~~~~~i~~~a~~a~~~~~D~v--~VTG~~~g----~~~~~~~l~~vr~~~~~PV~vG~GI~-~~~v~~~~~--ADGvI 238 (251)
.+.+ .++.+...|+|.+ .++|...+ ...+++.++++++. ++||++.|||+ ++++.+++. ||+++
T Consensus 141 -----~t~~-ea~~a~~~Gad~i~~~v~g~~~~~~~~~~~~~~~i~~~~~~-~ipvia~GGI~s~~~~~~~~~~Gad~v~ 213 (234)
T 1yxy_A 141 -----STFD-EGLVAHQAGIDFVGTTLSGYTPYSRQEAGPDVALIEALCKA-GIAVIAEGKIHSPEEAKKINDLGVAGIV 213 (234)
T ss_dssp -----SSHH-HHHHHHHTTCSEEECTTTTSSTTSCCSSSCCHHHHHHHHHT-TCCEEEESCCCSHHHHHHHHTTCCSEEE
T ss_pred -----CCHH-HHHHHHHcCCCEEeeeccccCCCCcCCCCCCHHHHHHHHhC-CCCEEEECCCCCHHHHHHHHHCCCCEEE
Confidence 1222 3555556799999 45554322 23457889999888 99999999995 999999996 99999
Q ss_pred EeceEee
Q psy9039 239 IGSHFKQ 245 (251)
Q Consensus 239 VGS~~~~ 245 (251)
+||+|.+
T Consensus 214 vGsal~~ 220 (234)
T 1yxy_A 214 VGGAITR 220 (234)
T ss_dssp ECHHHHC
T ss_pred EchHHhC
Confidence 9998754
|
| >4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3} | Back alignment and structure |
|---|
Probab=98.87 E-value=4.4e-09 Score=91.09 Aligned_cols=156 Identities=17% Similarity=0.232 Sum_probs=111.6
Q ss_pred CCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHHHHHHHHcCccceecc
Q psy9039 43 PPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQAAGLDFIRAE 122 (251)
Q Consensus 43 ~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g~~Fir~~ 122 (251)
++|.++|+ +.|+| +|+.|. -.+.++++|+.+++ .-+|.-...+ ..+...|...|++|+-..
T Consensus 53 ~al~~gGi-~~iEv------t~~t~~---------a~e~I~~l~~~~~~-~~iGaGTVlt--~~~a~~Ai~AGA~fIvsP 113 (232)
T 4e38_A 53 KVLAENGL-PAAEI------TFRSDA---------AVEAIRLLRQAQPE-MLIGAGTILN--GEQALAAKEAGATFVVSP 113 (232)
T ss_dssp HHHHHTTC-CEEEE------ETTSTT---------HHHHHHHHHHHCTT-CEEEEECCCS--HHHHHHHHHHTCSEEECS
T ss_pred HHHHHCCC-CEEEE------eCCCCC---------HHHHHHHHHHhCCC-CEEeECCcCC--HHHHHHHHHcCCCEEEeC
Confidence 77899999 99986 777662 23567778887764 3678777664 567888889999998742
Q ss_pred cccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHhhccCCCCCCcccHHHHHHHhhhccccEEEecCCCCCCCCC
Q psy9039 123 SFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSSHAITADVDITETAKAASFFLSDGLIITGNATGDPAD 202 (251)
Q Consensus 123 ~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~~~~~D~v~VTG~~~g~~~~ 202 (251)
+ ...++.+++++.+. .++. +......+..|...|+|.+-+.=... ...
T Consensus 114 ----------~----~~~~vi~~~~~~gi---~~ip-------------Gv~TptEi~~A~~~Gad~vK~FPa~~--~gG 161 (232)
T 4e38_A 114 ----------G----FNPNTVRACQEIGI---DIVP-------------GVNNPSTVEAALEMGLTTLKFFPAEA--SGG 161 (232)
T ss_dssp ----------S----CCHHHHHHHHHHTC---EEEC-------------EECSHHHHHHHHHTTCCEEEECSTTT--TTH
T ss_pred ----------C----CCHHHHHHHHHcCC---CEEc-------------CCCCHHHHHHHHHcCCCEEEECcCcc--ccC
Confidence 1 13457777777654 3321 12223345666667999998753321 123
Q ss_pred HHHHHHHHhcC-CCCEEEecCCChHhHHHhhc--CCEEEEeceEee-----cCee
Q psy9039 203 VSQLMSVKNAV-DLPILIGSGVTSDNVEHYMT--ADALIIGSHFKQ-----GGRT 249 (251)
Q Consensus 203 ~~~l~~vr~~~-~~PV~vG~GI~~~~v~~~~~--ADGvIVGS~~~~-----~g~~ 249 (251)
.+.|+.++.-. ++|++.-|||+++|+.++++ ++++++||++.. +|+|
T Consensus 162 ~~~lkal~~p~p~ip~~ptGGI~~~n~~~~l~aGa~~~vgGs~l~~~~~i~~~~~ 216 (232)
T 4e38_A 162 ISMVKSLVGPYGDIRLMPTGGITPSNIDNYLAIPQVLACGGTWMVDKKLVTNGEW 216 (232)
T ss_dssp HHHHHHHHTTCTTCEEEEBSSCCTTTHHHHHTSTTBCCEEECGGGCHHHHHTTCH
T ss_pred HHHHHHHHHHhcCCCeeeEcCCCHHHHHHHHHCCCeEEEECchhcChHHhhcCCH
Confidence 68899999875 79999999999999999997 899999999863 4665
|
| >1wa3_A 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, pyruvate, lyase; 1.9A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1vlw_A | Back alignment and structure |
|---|
Probab=98.82 E-value=2.6e-09 Score=89.79 Aligned_cols=155 Identities=17% Similarity=0.192 Sum_probs=102.4
Q ss_pred CCCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHHHHHHHHcCccceec
Q psy9039 42 LPPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQAAGLDFIRA 121 (251)
Q Consensus 42 a~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g~~Fir~ 121 (251)
++.+.++|+ |.|++-.. .|+ ..+.++++|+.++...++|+....| ......|...|++|+ .
T Consensus 28 ~~~~~~~G~-~~iev~~~--~~~-------------~~~~i~~ir~~~~~~~~ig~~~v~~--~~~~~~a~~~Gad~i-v 88 (205)
T 1wa3_A 28 ALAVFEGGV-HLIEITFT--VPD-------------ADTVIKELSFLKEKGAIIGAGTVTS--VEQCRKAVESGAEFI-V 88 (205)
T ss_dssp HHHHHHTTC-CEEEEETT--STT-------------HHHHHHHTHHHHHTTCEEEEESCCS--HHHHHHHHHHTCSEE-E
T ss_pred HHHHHHCCC-CEEEEeCC--Chh-------------HHHHHHHHHHHCCCCcEEEecccCC--HHHHHHHHHcCCCEE-E
Confidence 466788999 99986321 221 1345677777653115888865444 345566677899998 4
Q ss_pred ccccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHhhccCCCCCCcccHHHHHHHhhhccccEEEecCCCCCCCC
Q psy9039 122 ESFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSSHAITADVDITETAKAASFFLSDGLIITGNATGDPA 201 (251)
Q Consensus 122 ~~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~~~~~D~v~VTG~~~g~~~ 201 (251)
.. + + ..++.++.++.+. .++. +.+ +.. .++.+...|+|.+.+..... .
T Consensus 89 ~~---------~-~---~~~~~~~~~~~g~---~vi~------g~~------t~~-e~~~a~~~Gad~vk~~~~~~---~ 136 (205)
T 1wa3_A 89 SP---------H-L---DEEISQFCKEKGV---FYMP------GVM------TPT-ELVKAMKLGHTILKLFPGEV---V 136 (205)
T ss_dssp CS---------S-C---CHHHHHHHHHHTC---EEEC------EEC------SHH-HHHHHHHTTCCEEEETTHHH---H
T ss_pred cC---------C-C---CHHHHHHHHHcCC---cEEC------CcC------CHH-HHHHHHHcCCCEEEEcCccc---c
Confidence 21 1 1 1356677777654 3332 111 222 24555567999987754211 1
Q ss_pred CHHHHHHHHhcC-CCCEEEecCCChHhHHHhhc--CCEEEEeceEeecCe
Q psy9039 202 DVSQLMSVKNAV-DLPILIGSGVTSDNVEHYMT--ADALIIGSHFKQGGR 248 (251)
Q Consensus 202 ~~~~l~~vr~~~-~~PV~vG~GI~~~~v~~~~~--ADGvIVGS~~~~~g~ 248 (251)
..+.++++++.. ++|+++.|||+++|+.+++. ||+++|||+|.+ ++
T Consensus 137 g~~~~~~l~~~~~~~pvia~GGI~~~~~~~~~~~Ga~~v~vGs~i~~-~d 185 (205)
T 1wa3_A 137 GPQFVKAMKGPFPNVKFVPTGGVNLDNVCEWFKAGVLAVGVGSALVK-GT 185 (205)
T ss_dssp HHHHHHHHHTTCTTCEEEEBSSCCTTTHHHHHHHTCSCEEECHHHHC-SC
T ss_pred CHHHHHHHHHhCCCCcEEEcCCCCHHHHHHHHHCCCCEEEECccccC-CC
Confidence 357788888887 89999999999999999996 999999999987 44
|
| >3o63_A Probable thiamine-phosphate pyrophosphorylase; thiamin biosynthesis, TIM barrel, transferase; 2.35A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.82 E-value=7.9e-09 Score=90.09 Aligned_cols=68 Identities=12% Similarity=0.143 Sum_probs=52.1
Q ss_pred HHHhhhccccEEEec-----CCCCCC-CCCHHHHHHHHhc--CCCCEEEecCCChHhHHHhhc--CCEEEEeceEeec
Q psy9039 179 AKAASFFLSDGLIIT-----GNATGD-PADVSQLMSVKNA--VDLPILIGSGVTSDNVEHYMT--ADALIIGSHFKQG 246 (251)
Q Consensus 179 a~~a~~~~~D~v~VT-----G~~~g~-~~~~~~l~~vr~~--~~~PV~vG~GI~~~~v~~~~~--ADGvIVGS~~~~~ 246 (251)
++.|...|+|++++. .++.+. +..++.++++++. .++||++-||||++|+.+++. |||+.|||+|.+.
T Consensus 148 a~~A~~~GaDyI~vgpvf~T~tK~~~~~~gl~~l~~~~~~~~~~iPvvAiGGI~~~ni~~~~~aGa~gvav~sai~~a 225 (243)
T 3o63_A 148 VAAAAAGDADYFCVGPCWPTPTKPGRAAPGLGLVRVAAELGGDDKPWFAIGGINAQRLPAVLDAGARRIVVVRAITSA 225 (243)
T ss_dssp HHHHHHSSCSEEEECCSSCCCC-----CCCHHHHHHHHTC---CCCEEEESSCCTTTHHHHHHTTCCCEEESHHHHTC
T ss_pred HHHHhhCCCCEEEEcCccCCCCCCCcchhhHHHHHHHHHhccCCCCEEEecCCCHHHHHHHHHcCCCEEEEeHHHhCC
Confidence 455555799999983 333332 2357889998887 589999999999999999996 9999999998753
|
| >3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0 | Back alignment and structure |
|---|
Probab=98.81 E-value=8.7e-09 Score=91.25 Aligned_cols=166 Identities=14% Similarity=0.079 Sum_probs=112.6
Q ss_pred CCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHHHHHHHHcCccceecc
Q psy9039 43 PPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQAAGLDFIRAE 122 (251)
Q Consensus 43 ~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g~~Fir~~ 122 (251)
+.++++|+ ++|-+-..- +|... ...-++++|+.++ +|+-..-|..+ .++...+.+.|++-+-..
T Consensus 86 ~~y~~~GA-~~IsVltd~--~~f~G----------s~~~L~~ir~~v~--lPVl~Kdfi~d-~~qi~ea~~~GAD~VlLi 149 (272)
T 3tsm_A 86 KAYEEGGA-ACLSVLTDT--PSFQG----------APEFLTAARQACS--LPALRKDFLFD-PYQVYEARSWGADCILII 149 (272)
T ss_dssp HHHHHTTC-SEEEEECCS--TTTCC----------CHHHHHHHHHTSS--SCEEEESCCCS-THHHHHHHHTTCSEEEEE
T ss_pred HHHHHCCC-CEEEEeccc--cccCC----------CHHHHHHHHHhcC--CCEEECCccCC-HHHHHHHHHcCCCEEEEc
Confidence 66889999 999875433 33322 2234577888888 89987777777 567777788888887653
Q ss_pred cccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHhhccCCCCCCcccHHHHHHHhhhccccEEEecCCCC-CCCC
Q psy9039 123 SFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSSHAITADVDITETAKAASFFLSDGLIITGNAT-GDPA 201 (251)
Q Consensus 123 ~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~~~~~D~v~VTG~~~-g~~~ 201 (251)
. ..+ -..+..++.++.+.+|. .++.++ | + .+.++.|...++|.++++...- ....
T Consensus 150 ~---a~L-----~~~~l~~l~~~a~~lGl---~~lvev------h------~-~eEl~~A~~~ga~iIGinnr~l~t~~~ 205 (272)
T 3tsm_A 150 M---ASV-----DDDLAKELEDTAFALGM---DALIEV------H------D-EAEMERALKLSSRLLGVNNRNLRSFEV 205 (272)
T ss_dssp T---TTS-----CHHHHHHHHHHHHHTTC---EEEEEE------C------S-HHHHHHHTTSCCSEEEEECBCTTTCCB
T ss_pred c---ccc-----CHHHHHHHHHHHHHcCC---eEEEEe------C------C-HHHHHHHHhcCCCEEEECCCCCccCCC
Confidence 1 001 01235567777778775 222211 1 2 2334556667999999997532 2344
Q ss_pred CHHHHHHHHhcC--CCCEEEecCC-ChHhHHHhhc--CCEEEEeceEeecCe
Q psy9039 202 DVSQLMSVKNAV--DLPILIGSGV-TSDNVEHYMT--ADALIIGSHFKQGGR 248 (251)
Q Consensus 202 ~~~~l~~vr~~~--~~PV~vG~GI-~~~~v~~~~~--ADGvIVGS~~~~~g~ 248 (251)
+++...++.+.. ++|++..||| |++++.++.. |||+.|||+|++..+
T Consensus 206 dl~~~~~L~~~ip~~~~vIaesGI~t~edv~~l~~~Ga~gvLVG~almr~~d 257 (272)
T 3tsm_A 206 NLAVSERLAKMAPSDRLLVGESGIFTHEDCLRLEKSGIGTFLIGESLMRQHD 257 (272)
T ss_dssp CTHHHHHHHHHSCTTSEEEEESSCCSHHHHHHHHTTTCCEEEECHHHHTSSC
T ss_pred ChHHHHHHHHhCCCCCcEEEECCCCCHHHHHHHHHcCCCEEEEcHHHcCCcC
Confidence 667666776665 6999999999 7999999996 999999999987543
|
| >3zen_D Fatty acid synthase; transferase, mycolic acid biosynthesis, multifunctional ENZY substrate channeling; HET: FMN; 7.50A {Mycobacterium smegmatis} PDB: 4b3y_A* | Back alignment and structure |
|---|
Probab=98.76 E-value=3.5e-09 Score=117.99 Aligned_cols=153 Identities=12% Similarity=0.179 Sum_probs=93.5
Q ss_pred HHHHHHHHHHHHHHhCCCCccEEEEEeeCChHH---HHHHHHHcCccceecccccccccCCCceeec----CcchhHHHH
Q psy9039 74 ITANMTRLCAEIRKVLPPSVPVGVQILSGCNKA---ALATAQAAGLDFIRAESFVFGHMADEGLMNA----QAGPLLRYR 146 (251)
Q Consensus 74 i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~---~~~ia~a~g~~Fir~~~~~~~~~~~~Gli~~----da~e~~~~r 146 (251)
+.+.+.+.++++|+.++...|+++|+++..+.. .++. .+|++.+...+ +..+|++.+ +.++...+.
T Consensus 464 ~~~~l~~~i~~~r~~~~~~~p~~vNl~~~~p~~~~~~~g~-----~~~~~~~~~~g--~~vdgv~~~aG~P~~ee~~~~i 536 (3089)
T 3zen_D 464 TEQIFNDRIAELETLLEPGRAIQFNTLFLDPYLWKLQVGG-----KRLVQRARQSG--APIDGLVVSAGIPDLEEAVDII 536 (3089)
T ss_dssp SHHHHHHHHHHHHHHSCTTCCCEEEEECSCHHHHHHHHHH-----HHHHHHHHHTT--CSCCEEEEESSCCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhcCCCCceeechhhcChhhhhhccCH-----HHHHHHHHHcC--CCceEEEEeCCCCchhHhHHHH
Confidence 456688899999998832269999998754333 3333 24555431111 225676665 223334444
Q ss_pred HhcCCCcchhhhhhHhhccCCCCCCcccHHHHHHHhhhcc------ccEEEecCCCCCCCC---C-HHHH----HHHHhc
Q psy9039 147 KQIGADNVLVFTDIKKKHSSHAITADVDITETAKAASFFL------SDGLIITGNATGDPA---D-VSQL----MSVKNA 212 (251)
Q Consensus 147 ~~l~~~~i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~~~~------~D~v~VTG~~~g~~~---~-~~~l----~~vr~~ 212 (251)
+.+...+++++. +..++ .. .++.+...+ .++++++|.+.|... + ..++ .++|+.
T Consensus 537 ~~l~~~Gi~~i~---------~~~~t--~~-~a~~~~~i~~d~~~~~y~vv~~G~eaGGH~g~~~~~~ll~~~~~~ir~~ 604 (3089)
T 3zen_D 537 DELNEVGISHVV---------FKPGT--VE-QIRSVIRIAAEVPTKPVIVHIEGGRAGGHHSWEDLDDLLLATYSELRSR 604 (3089)
T ss_dssp TSTTHHHHCSEE---------ECCCS--HH-HHHHHHHHHTTSTTSCEEEEECCSSSSEECCSCCHHHHHHHHHHHHTTC
T ss_pred HHHHHcCCEEEE---------EeCCC--HH-HHHHHHHhhhhcCCCcEEEEEeCCCcCCCCCcccHHHHHHHHHHHHhhc
Confidence 444333444431 00111 11 122222223 448999998766432 3 3566 788999
Q ss_pred CCCCEEEecCC-ChHhHHHhh-----------c--CCEEEEeceEee
Q psy9039 213 VDLPILIGSGV-TSDNVEHYM-----------T--ADALIIGSHFKQ 245 (251)
Q Consensus 213 ~~~PV~vG~GI-~~~~v~~~~-----------~--ADGvIVGS~~~~ 245 (251)
+++||++|||| ++++++.++ . ||||+|||+|+.
T Consensus 605 ~~iPViaaGGI~d~~~vaaal~g~ws~~~~~p~lGAdGV~vGTrfl~ 651 (3089)
T 3zen_D 605 SNITICVGGGIGTPERSAEYLSGRWAEVHGYPLMPIDGILVGTAAMA 651 (3089)
T ss_dssp TTEEEEEESSCCCTTTTHHHHHTGGGGTTTCCCCCCSEEECSSTTTT
T ss_pred CCCeEEEEeCCCCHHHHHHHhccccccccCccCCCCCEEEecHHHHh
Confidence 99999999999 799999888 6 999999999974
|
| >3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum} | Back alignment and structure |
|---|
Probab=98.75 E-value=2.7e-08 Score=91.40 Aligned_cols=143 Identities=17% Similarity=0.216 Sum_probs=91.1
Q ss_pred HHHHHHHHHHhCCCCccEEEEEeeCChHHHHHHHHHcCccceecccccccccCCCceeecCcchhHHHHHhcCCCcchhh
Q psy9039 78 MTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQAAGLDFIRAESFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVF 157 (251)
Q Consensus 78 ~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g~~Fir~~~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~ 157 (251)
..+.++++|+... .|+++|+..|+ ......+...|++++..+... |......+.+.+.++.++ ++++
T Consensus 83 ~~~~I~~vk~~~~--~pvga~ig~~~-~e~a~~l~eaGad~I~ld~a~-------G~~~~~~~~i~~i~~~~~---~~Vi 149 (361)
T 3khj_A 83 QVNEVLKVKNSGG--LRVGAAIGVNE-IERAKLLVEAGVDVIVLDSAH-------GHSLNIIRTLKEIKSKMN---IDVI 149 (361)
T ss_dssp HHHHHHHHHHTTC--CCCEEEECTTC-HHHHHHHHHTTCSEEEECCSC-------CSBHHHHHHHHHHHHHCC---CEEE
T ss_pred HHHHHHHHHhccC--ceEEEEeCCCH-HHHHHHHHHcCcCeEEEeCCC-------CCcHHHHHHHHHHHHhcC---CcEE
Confidence 4456778887766 69999999887 566777778889988754211 100000122333444443 3443
Q ss_pred hhhHhhccCCCCCCcccHHHHHHHhhhccccEEEecCCCCCC-----------CCCHHHHHHHHh---cCCCCEEEecCC
Q psy9039 158 TDIKKKHSSHAITADVDITETAKAASFFLSDGLIITGNATGD-----------PADVSQLMSVKN---AVDLPILIGSGV 223 (251)
Q Consensus 158 a~v~~k~~~~~~~~~~~i~~~a~~a~~~~~D~v~VTG~~~g~-----------~~~~~~l~~vr~---~~~~PV~vG~GI 223 (251)
. ......+.++.+...|+|++.|++ ..|. .+..+.+.++++ .+++||++.|||
T Consensus 150 v------------g~v~t~e~A~~l~~aGaD~I~VG~-~~Gs~~~tr~~~g~g~p~~~~i~~v~~~~~~~~iPVIA~GGI 216 (361)
T 3khj_A 150 V------------GNVVTEEATKELIENGADGIKVGI-GPGSICTTRIVAGVGVPQITAIEKCSSVASKFGIPIIADGGI 216 (361)
T ss_dssp E------------EEECSHHHHHHHHHTTCSEEEECS-SCCTTCCHHHHTCBCCCHHHHHHHHHHHHHHHTCCEEEESCC
T ss_pred E------------ccCCCHHHHHHHHHcCcCEEEEec-CCCcCCCcccccCCCCCcHHHHHHHHHHHhhcCCeEEEECCC
Confidence 1 011223456666667999999842 1111 234455665543 358999999999
Q ss_pred -ChHhHHHhhc--CCEEEEeceEeec
Q psy9039 224 -TSDNVEHYMT--ADALIIGSHFKQG 246 (251)
Q Consensus 224 -~~~~v~~~~~--ADGvIVGS~~~~~ 246 (251)
+++++.+++. ||+|.+||+|...
T Consensus 217 ~~~~di~kala~GAd~V~vGs~~~~t 242 (361)
T 3khj_A 217 RYSGDIGKALAVGASSVMIGSILAGT 242 (361)
T ss_dssp CSHHHHHHHHHHTCSEEEESTTTTTB
T ss_pred CCHHHHHHHHHcCCCEEEEChhhhcC
Confidence 7999999886 9999999998653
|
| >1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P epimerase, NANE, structural genomics, protein STR initiative, PSI; 1.95A {Staphylococcus aureus subsp} SCOP: c.1.2.5 | Back alignment and structure |
|---|
Probab=98.75 E-value=1.9e-08 Score=85.47 Aligned_cols=173 Identities=18% Similarity=0.236 Sum_probs=104.8
Q ss_pred cCCCCCCCcc-hHHHHHHHHHhhCCCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEE
Q psy9039 20 EAESGPEITA-NMTRLCAEIRKVLPPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQ 98 (251)
Q Consensus 20 ~~pG~P~~~~-~~~~i~~~a~~~a~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn 98 (251)
+.+|.|..+. +...+. +++.++|+ +++.+. +| ..++++|+.++ .|+ ++
T Consensus 13 ~~~~~p~~~~~~~~~~a-------~~~~~~Ga-~~i~~~-------------~~-------~~i~~i~~~~~--~pv-~~ 61 (223)
T 1y0e_A 13 ALPDEPLHSSFIMSKMA-------LAAYEGGA-VGIRAN-------------TK-------EDILAIKETVD--LPV-IG 61 (223)
T ss_dssp CCTTSTTCCHHHHHHHH-------HHHHHHTC-SEEEEE-------------SH-------HHHHHHHHHCC--SCE-EE
T ss_pred CCCCCCCCCCccHHHHH-------HHHHHCCC-eeeccC-------------CH-------HHHHHHHHhcC--CCE-Ee
Confidence 3457787773 444442 55678999 999641 22 44778888887 798 32
Q ss_pred Ee----------eCChHHHHHHHHHcCccceecccccccccCCCceeec--CcchhHHHHHhcCCCcchhhhhhHhhccC
Q psy9039 99 IL----------SGCNKAALATAQAAGLDFIRAESFVFGHMADEGLMNA--QAGPLLRYRKQIGADNVLVFTDIKKKHSS 166 (251)
Q Consensus 99 ~~----------~N~~~~~~~ia~a~g~~Fir~~~~~~~~~~~~Gli~~--da~e~~~~r~~l~~~~i~i~a~v~~k~~~ 166 (251)
.. ...+......+...|++++.... .. ...| ...++.+..++.- ++..++. +.
T Consensus 62 ~~~~~~~~~~~~i~~~~~~i~~~~~~Gad~v~l~~----~~----~~~p~~~~~~~i~~~~~~~-~~~~v~~------~~ 126 (223)
T 1y0e_A 62 IVKRDYDHSDVFITATSKEVDELIESQCEVIALDA----TL----QQRPKETLDELVSYIRTHA-PNVEIMA------DI 126 (223)
T ss_dssp ECBCCCTTCCCCBSCSHHHHHHHHHHTCSEEEEEC----SC----SCCSSSCHHHHHHHHHHHC-TTSEEEE------EC
T ss_pred eeccCCCccccccCCcHHHHHHHHhCCCCEEEEee----ec----ccCcccCHHHHHHHHHHhC-CCceEEe------cC
Confidence 22 11224556667778888877531 11 0112 1234444444331 1233321 11
Q ss_pred CCCCCcccHHHHHHHhhhccccEEEecCC-CC----CC---CCCHHHHHHHHhcCCCCEEEecCC-ChHhHHHhhc--CC
Q psy9039 167 HAITADVDITETAKAASFFLSDGLIITGN-AT----GD---PADVSQLMSVKNAVDLPILIGSGV-TSDNVEHYMT--AD 235 (251)
Q Consensus 167 ~~~~~~~~i~~~a~~a~~~~~D~v~VTG~-~~----g~---~~~~~~l~~vr~~~~~PV~vG~GI-~~~~v~~~~~--AD 235 (251)
+ +.++ ++.+...|+|.+.++-. .+ +. .+.++.++++++.+++||++.||| |++++.+++. ||
T Consensus 127 ~------t~~e-~~~~~~~G~d~i~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~ipvia~GGI~~~~~~~~~~~~Gad 199 (223)
T 1y0e_A 127 A------TVEE-AKNAARLGFDYIGTTLHGYTSYTQGQLLYQNDFQFLKDVLQSVDAKVIAEGNVITPDMYKRVMDLGVH 199 (223)
T ss_dssp S------SHHH-HHHHHHTTCSEEECTTTTSSTTSTTCCTTHHHHHHHHHHHHHCCSEEEEESSCCSHHHHHHHHHTTCS
T ss_pred C------CHHH-HHHHHHcCCCEEEeCCCcCcCCCCCCCCCcccHHHHHHHHhhCCCCEEEecCCCCHHHHHHHHHcCCC
Confidence 1 2233 45555678999876421 11 11 123467888888889999999999 8999999996 99
Q ss_pred EEEEeceEee
Q psy9039 236 ALIIGSHFKQ 245 (251)
Q Consensus 236 GvIVGS~~~~ 245 (251)
++++||+|.+
T Consensus 200 ~v~vG~al~~ 209 (223)
T 1y0e_A 200 CSVVGGAITR 209 (223)
T ss_dssp EEEECHHHHC
T ss_pred EEEEChHHcC
Confidence 9999999754
|
| >1vhc_A Putative KHG/KDPG aldolase; structural genomics, unknown function; HET: MSE; 1.89A {Haemophilus influenzae} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=98.73 E-value=4.3e-08 Score=84.39 Aligned_cols=150 Identities=13% Similarity=0.176 Sum_probs=102.4
Q ss_pred CCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHHHHHHHHcCccceecc
Q psy9039 43 PPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQAAGLDFIRAE 122 (251)
Q Consensus 43 ~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g~~Fir~~ 122 (251)
+++.++|+ +.+++ .+..+ . ..+.++++++.+++ .-+|..+.. . ......|.+.|++|+...
T Consensus 36 ~al~~gGv-~~iel------~~k~~--~-------~~~~i~~l~~~~~~-l~vgaGtvl-~-~d~~~~A~~aGAd~v~~p 96 (224)
T 1vhc_A 36 DTLAKNGL-SVAEI------TFRSE--A-------AADAIRLLRANRPD-FLIAAGTVL-T-AEQVVLAKSSGADFVVTP 96 (224)
T ss_dssp HHHHHTTC-CEEEE------ETTST--T-------HHHHHHHHHHHCTT-CEEEEESCC-S-HHHHHHHHHHTCSEEECS
T ss_pred HHHHHcCC-CEEEE------eccCc--h-------HHHHHHHHHHhCcC-cEEeeCcEe-e-HHHHHHHHHCCCCEEEEC
Confidence 67889999 99986 23333 1 22466777777764 367776654 3 367888899999998632
Q ss_pred cccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHhhccCCCCCCcccHHHHHHHhhhccccEEEecCCCCCCCC-
Q psy9039 123 SFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSSHAITADVDITETAKAASFFLSDGLIITGNATGDPA- 201 (251)
Q Consensus 123 ~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~~~~~D~v~VTG~~~g~~~- 201 (251)
+ ...++.+.+++++...+ . |.. +.. .+..|...|+|++.+ -.....
T Consensus 97 ----------~----~d~~v~~~ar~~g~~~i--~-------Gv~------t~~-e~~~A~~~Gad~vk~---Fpa~~~g 143 (224)
T 1vhc_A 97 ----------G----LNPKIVKLCQDLNFPIT--P-------GVN------NPM-AIEIALEMGISAVKF---FPAEASG 143 (224)
T ss_dssp ----------S----CCHHHHHHHHHTTCCEE--C-------EEC------SHH-HHHHHHHTTCCEEEE---TTTTTTT
T ss_pred ----------C----CCHHHHHHHHHhCCCEE--e-------ccC------CHH-HHHHHHHCCCCEEEE---eeCcccc
Confidence 0 12345566666765211 1 111 223 345666679999988 222222
Q ss_pred CHHHHHHHHhcC-CCCEEEecCCChHhHHHhhc---CCEEEEeceEee
Q psy9039 202 DVSQLMSVKNAV-DLPILIGSGVTSDNVEHYMT---ADALIIGSHFKQ 245 (251)
Q Consensus 202 ~~~~l~~vr~~~-~~PV~vG~GI~~~~v~~~~~---ADGvIVGS~~~~ 245 (251)
..+.++++++.. ++|+++-|||+++|+.++++ ++++. ||+|..
T Consensus 144 G~~~lk~l~~~~~~ipvvaiGGI~~~N~~~~l~agga~~v~-gS~i~~ 190 (224)
T 1vhc_A 144 GVKMIKALLGPYAQLQIMPTGGIGLHNIRDYLAIPNIVACG-GSWFVE 190 (224)
T ss_dssp HHHHHHHHHTTTTTCEEEEBSSCCTTTHHHHHTSTTBCCEE-ECGGGC
T ss_pred CHHHHHHHHhhCCCCeEEEECCcCHHHHHHHHhcCCCEEEE-EchhcC
Confidence 368899999988 79999999999999999995 88888 999875
|
| >2nv1_A Pyridoxal biosynthesis lyase PDXS; (beta/alpha)8-barrel, synthase; 2.08A {Bacillus subtilis} PDB: 2nv2_A* 1znn_A | Back alignment and structure |
|---|
Probab=98.72 E-value=3.4e-08 Score=88.39 Aligned_cols=171 Identities=19% Similarity=0.256 Sum_probs=98.4
Q ss_pred CCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHHHHHHHHcCccceecc
Q psy9039 43 PPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQAAGLDFIRAE 122 (251)
Q Consensus 43 ~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g~~Fir~~ 122 (251)
+.++++|+ |+|.+-|. +|.......|-. .......++++++.++ +|+.++..... .....++.+.|++++-.
T Consensus 35 ~~~~~~Ga-~~I~~l~p--~~~~~~~~~G~~-~~~~~~~i~~I~~~~~--iPv~~k~r~g~-~~~~~~~~a~GAd~V~~- 106 (305)
T 2nv1_A 35 KIAEEAGA-VAVMALER--VPADIRAAGGVA-RMADPTIVEEVMNAVS--IPVMAKARIGH-IVEARVLEAMGVDYIDE- 106 (305)
T ss_dssp HHHHHTTC-SEEEECCC---------CCCCC-CCCCHHHHHHHHHHCS--SCEEEEECTTC-HHHHHHHHHHTCSEEEE-
T ss_pred HHHHHcCC-CEEEEcCC--CcchhhhccCcc-cCCCHHHHHHHHHhCC--CCEEecccccc-hHHHHHHHHCCCCEEEE-
Confidence 55778999 99954230 111111001100 0001245667777777 79877665432 34456667788888741
Q ss_pred cccccccCCCceeec-CcchhHHHHHhcCCCcchhhhhhHhhccCCCCCCcccHHHHHHHhhhccccEEEecCCCCC---
Q psy9039 123 SFVFGHMADEGLMNA-QAGPLLRYRKQIGADNVLVFTDIKKKHSSHAITADVDITETAKAASFFLSDGLIITGNATG--- 198 (251)
Q Consensus 123 ~~~~~~~~~~Gli~~-da~e~~~~r~~l~~~~i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~~~~~D~v~VTG~~~g--- 198 (251)
... +.+ +..+..+ .++++. .++. +-.+..+. ..+...|+|.+.++|.. |
T Consensus 107 ----~~~-----l~~~~~~~~i~-~~~~g~---~v~~------------~~~~~~e~-~~a~~~Gad~V~~~G~~-g~g~ 159 (305)
T 2nv1_A 107 ----SEV-----LTPADEEFHLN-KNEYTV---PFVC------------GCRDLGEA-TRRIAEGASMLRTKGEP-GTGN 159 (305)
T ss_dssp ----CTT-----SCCSCSSCCCC-GGGCSS---CEEE------------EESSHHHH-HHHHHTTCSEEEECCCT-TSCC
T ss_pred ----ecc-----CCHHHHHHHHH-HhccCC---cEEE------------EeCCHHHH-HHHHHCCCCEEEecccc-Cccc
Confidence 100 111 1112211 122332 2221 11133333 33335689999997732 2
Q ss_pred --------------------------------CCCCHHHHHHHHhcCCCCEE--EecCC-ChHhHHHhhc--CCEEEEec
Q psy9039 199 --------------------------------DPADVSQLMSVKNAVDLPIL--IGSGV-TSDNVEHYMT--ADALIIGS 241 (251)
Q Consensus 199 --------------------------------~~~~~~~l~~vr~~~~~PV~--vG~GI-~~~~v~~~~~--ADGvIVGS 241 (251)
....++.++++++.+++||+ +.||| |++++.+++. |||++|||
T Consensus 160 ~~~~~~h~rt~~~~i~~l~gi~~~~~~~~~~~~~~~~~~i~~i~~~~~iPvi~~a~GGI~~~~d~~~~~~~GadgV~vGs 239 (305)
T 2nv1_A 160 IVEAVRHMRKVNAQVRKVVAMSEDELMTEAKNLGAPYELLLQIKKDGKLPVVNFAAGGVATPADAALMMQLGADGVFVGS 239 (305)
T ss_dssp THHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHTCCHHHHHHHHHHTSCSSCEEBCSCCCSHHHHHHHHHTTCSCEEECG
T ss_pred hHHHHhhhhhhhccchhhccccchhhhcccccccccHHHHHHHHHhcCCCEEEEeccCCCCHHHHHHHHHcCCCEEEEcH
Confidence 12356788899888899999 99999 8999999986 99999999
Q ss_pred eEeecCe
Q psy9039 242 HFKQGGR 248 (251)
Q Consensus 242 ~~~~~g~ 248 (251)
+|.+.++
T Consensus 240 ai~~~~~ 246 (305)
T 2nv1_A 240 GIFKSDN 246 (305)
T ss_dssp GGGGSSC
T ss_pred HHHcCCC
Confidence 9987654
|
| >1mxs_A KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate aldolase, sulfate, beta-BA lyase; 2.20A {Pseudomonas putida} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=98.72 E-value=1.4e-08 Score=87.53 Aligned_cols=150 Identities=14% Similarity=0.153 Sum_probs=104.0
Q ss_pred CCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHHHHHHHHcCccceecc
Q psy9039 43 PPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQAAGLDFIRAE 122 (251)
Q Consensus 43 ~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g~~Fir~~ 122 (251)
+++.++|+ +.+++ .+..+ . ..+.++++++.+++ .-+|..+..+ ......|.+.|++|+...
T Consensus 45 ~al~~gGv-~~iel------~~k~~-----~----~~~~i~~l~~~~~~-~~igagtvl~--~d~~~~A~~aGAd~v~~p 105 (225)
T 1mxs_A 45 DALAAGGI-RTLEV------TLRSQ-----H----GLKAIQVLREQRPE-LCVGAGTVLD--RSMFAAVEAAGAQFVVTP 105 (225)
T ss_dssp HHHHHTTC-CEEEE------ESSST-----H----HHHHHHHHHHHCTT-SEEEEECCCS--HHHHHHHHHHTCSSEECS
T ss_pred HHHHHCCC-CEEEE------ecCCc-----c----HHHHHHHHHHhCcc-cEEeeCeEee--HHHHHHHHHCCCCEEEeC
Confidence 77889999 99986 23332 1 23356777777764 3677766543 367888899999998742
Q ss_pred cccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHhhccCCCCCCcccHHHHHHHhhhccccEEEecCCCCCCCC-
Q psy9039 123 SFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSSHAITADVDITETAKAASFFLSDGLIITGNATGDPA- 201 (251)
Q Consensus 123 ~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~~~~~D~v~VTG~~~g~~~- 201 (251)
+ ...++.+++++++.+.+ . |.+ +.. .+..|...|+|++.+ ......
T Consensus 106 ----------~----~d~~v~~~~~~~g~~~i--~-------G~~------t~~-e~~~A~~~Gad~vk~---FPa~~~~ 152 (225)
T 1mxs_A 106 ----------G----ITEDILEAGVDSEIPLL--P-------GIS------TPS-EIMMGYALGYRRFKL---FPAEISG 152 (225)
T ss_dssp ----------S----CCHHHHHHHHHCSSCEE--C-------EEC------SHH-HHHHHHTTTCCEEEE---TTHHHHT
T ss_pred ----------C----CCHHHHHHHHHhCCCEE--E-------eeC------CHH-HHHHHHHCCCCEEEE---ccCcccc
Confidence 1 23457788888875221 1 111 233 346666689999988 111111
Q ss_pred CHHHHHHHHhcC-CCCEEEecCCChHhHHHhhc---CCEEEEeceEee
Q psy9039 202 DVSQLMSVKNAV-DLPILIGSGVTSDNVEHYMT---ADALIIGSHFKQ 245 (251)
Q Consensus 202 ~~~~l~~vr~~~-~~PV~vG~GI~~~~v~~~~~---ADGvIVGS~~~~ 245 (251)
..+.++++++.. ++|+++-|||+++|+.++++ +|++. ||++..
T Consensus 153 G~~~lk~i~~~~~~ipvvaiGGI~~~N~~~~l~~~Ga~~v~-gSai~~ 199 (225)
T 1mxs_A 153 GVAAIKAFGGPFGDIRFCPTGGVNPANVRNYMALPNVMCVG-TTWMLD 199 (225)
T ss_dssp HHHHHHHHHTTTTTCEEEEBSSCCTTTHHHHHHSTTBCCEE-ECTTSC
T ss_pred CHHHHHHHHhhCCCCeEEEECCCCHHHHHHHHhccCCEEEE-EchhcC
Confidence 257788999888 89999999999999999985 89999 999876
|
| >1wbh_A KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli} SCOP: c.1.10.1 PDB: 2c0a_A 1wau_A 1eua_A 1eun_A 1fq0_A* 1fwr_A* | Back alignment and structure |
|---|
Probab=98.70 E-value=7.2e-08 Score=82.39 Aligned_cols=150 Identities=17% Similarity=0.194 Sum_probs=103.8
Q ss_pred CCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHHHHHHHHcCccceecc
Q psy9039 43 PPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQAAGLDFIRAE 122 (251)
Q Consensus 43 ~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g~~Fir~~ 122 (251)
+++.++|+ +.+++- +..+ . ..+.++++++.+++. -+|..++.+ ......|.+.|++|+...
T Consensus 35 ~al~~gGv-~~iel~------~k~~--~-------~~~~i~~l~~~~~~~-~vgagtvi~--~d~~~~A~~aGAd~v~~p 95 (214)
T 1wbh_A 35 KALVAGGV-RVLNVT------LRTE--C-------AVDAIRAIAKEVPEA-IVGAGTVLN--PQQLAEVTEAGAQFAISP 95 (214)
T ss_dssp HHHHHTTC-CEEEEE------SCST--T-------HHHHHHHHHHHCTTS-EEEEESCCS--HHHHHHHHHHTCSCEEES
T ss_pred HHHHHcCC-CEEEEe------CCCh--h-------HHHHHHHHHHHCcCC-EEeeCEEEE--HHHHHHHHHcCCCEEEcC
Confidence 67889999 999862 3333 1 123667777777643 566666443 367888899999998742
Q ss_pred cccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHhhccCCCCCCcccHHHHHHHhhhccccEEEecCCCCCCCC-
Q psy9039 123 SFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSSHAITADVDITETAKAASFFLSDGLIITGNATGDPA- 201 (251)
Q Consensus 123 ~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~~~~~D~v~VTG~~~g~~~- 201 (251)
+ ...++.+.+++++.+.+ . |.+ +.. .+..|...|+|++.+ ......
T Consensus 96 ----------~----~d~~v~~~~~~~g~~~i--~-------G~~------t~~-e~~~A~~~Gad~v~~---Fpa~~~g 142 (214)
T 1wbh_A 96 ----------G----LTEPLLKAATEGTIPLI--P-------GIS------TVS-ELMLGMDYGLKEFKF---FPAEANG 142 (214)
T ss_dssp ----------S----CCHHHHHHHHHSSSCEE--E-------EES------SHH-HHHHHHHTTCCEEEE---TTTTTTT
T ss_pred ----------C----CCHHHHHHHHHhCCCEE--E-------ecC------CHH-HHHHHHHCCCCEEEE---ecCcccc
Confidence 0 23457788888775221 1 111 223 345666679999988 222222
Q ss_pred CHHHHHHHHhcC-CCCEEEecCCChHhHHHhhc---CCEEEEeceEee
Q psy9039 202 DVSQLMSVKNAV-DLPILIGSGVTSDNVEHYMT---ADALIIGSHFKQ 245 (251)
Q Consensus 202 ~~~~l~~vr~~~-~~PV~vG~GI~~~~v~~~~~---ADGvIVGS~~~~ 245 (251)
..+.++++++.. ++|++.-||||++|+.++++ ++++. ||++..
T Consensus 143 G~~~lk~i~~~~~~ipvvaiGGI~~~n~~~~l~agg~~~v~-gS~i~~ 189 (214)
T 1wbh_A 143 GVKALQAIAGPFSQVRFCPTGGISPANYRDYLALKSVLCIG-GSWLVP 189 (214)
T ss_dssp HHHHHHHHHTTCTTCEEEEBSSCCTTTHHHHHTSTTBSCEE-EGGGSC
T ss_pred CHHHHHHHhhhCCCCeEEEECCCCHHHHHHHHhcCCCeEEE-eccccC
Confidence 368899999888 89999999999999999995 88888 999875
|
| >1ep3_A Dihydroorotate dehydrogenase B (PYRD subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ep2_A* 1ep1_A* | Back alignment and structure |
|---|
Probab=98.69 E-value=4.8e-08 Score=86.84 Aligned_cols=73 Identities=30% Similarity=0.364 Sum_probs=56.8
Q ss_pred cHHHHHHHhhhccccEEEecCCC--------CC----------C--CC----CHHHHHHHHhcCCCCEEEecCC-ChHhH
Q psy9039 174 DITETAKAASFFLSDGLIITGNA--------TG----------D--PA----DVSQLMSVKNAVDLPILIGSGV-TSDNV 228 (251)
Q Consensus 174 ~i~~~a~~a~~~~~D~v~VTG~~--------~g----------~--~~----~~~~l~~vr~~~~~PV~vG~GI-~~~~v 228 (251)
.+.++++.+...|+|++.++|.. +. . +. .++.++++++.+++||++.||| +++++
T Consensus 177 ~~~~~a~~l~~~G~d~i~v~~~~~g~~i~~~~~~~~~~~~~~g~~g~~~~~~~~~~i~~i~~~~~ipvia~GGI~~~~d~ 256 (311)
T 1ep3_A 177 DIVPIAKAVEAAGADGLTMINTLMGVRFDLKTRQPILANITGGLSGPAIKPVALKLIHQVAQDVDIPIIGMGGVANAQDV 256 (311)
T ss_dssp CSHHHHHHHHHTTCSEEEECCCEEECCBCTTTCSBSSTTSCEEEESGGGHHHHHHHHHHHHTTCSSCEEECSSCCSHHHH
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCcccccCcccCCccccCCCCcccCccchHHHHHHHHHHHHhcCCCEEEECCcCCHHHH
Confidence 34566777777899999998731 11 0 01 1367889999999999999999 79999
Q ss_pred HHhhc--CCEEEEeceEeec
Q psy9039 229 EHYMT--ADALIIGSHFKQG 246 (251)
Q Consensus 229 ~~~~~--ADGvIVGS~~~~~ 246 (251)
.+++. ||+|++||+|..+
T Consensus 257 ~~~l~~GAd~V~vg~~~l~~ 276 (311)
T 1ep3_A 257 LEMYMAGASAVAVGTANFAD 276 (311)
T ss_dssp HHHHHHTCSEEEECTHHHHC
T ss_pred HHHHHcCCCEEEECHHHHcC
Confidence 99885 9999999999764
|
| >4adt_A Pyridoxine biosynthetic enzyme PDX1 homologue, PU; transferase, pyridoxal 5-phosphate biosynthesis; 2.42A {Plasmodium berghei} PDB: 4adu_A* 4ads_A | Back alignment and structure |
|---|
Probab=98.67 E-value=4.2e-08 Score=87.88 Aligned_cols=171 Identities=16% Similarity=0.184 Sum_probs=102.3
Q ss_pred CCCcCCCCccEEEEe-ecC-CCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHHHHHHHHcCcccee
Q psy9039 43 PPSVPVGVQHGVIVE-NMH-DVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQAAGLDFIR 120 (251)
Q Consensus 43 ~~l~~~Gv~D~i~ie-N~~-~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g~~Fir 120 (251)
+.++++|+ |.|.+- |.- |..|+..+.-+ .....++++|+.++ +|+..-.-... +..+-+..+.|++.+
T Consensus 35 ~~ye~~GA-~~lsvLe~~~~Di~~~~g~~R~-----~~~~~i~~i~~~v~--iPvl~k~~i~~-ide~qil~aaGAD~I- 104 (297)
T 4adt_A 35 KIAEKAGA-IGVMILENIPSELRNTDGVARS-----VDPLKIEEIRKCIS--INVLAKVRIGH-FVEAQILEELKVDML- 104 (297)
T ss_dssp HHHHHHTC-SEEEECCCCC-----CCCCCCC-----CCHHHHHHHHTTCC--SEEEEEEETTC-HHHHHHHHHTTCSEE-
T ss_pred HHHHHcCC-CEEEEecCCCCcchhcCCcccC-----CCHHHHHHHHHhcC--CCEEEeccCCc-HHHHHHHHHcCCCEE-
Confidence 66788999 998762 111 44455421100 13456788999888 89876543333 455666667888887
Q ss_pred cccccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHhhccCCCCCCcccHHHHHHHhhhccccEEEecCC-CCCC
Q psy9039 121 AESFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSSHAITADVDITETAKAASFFLSDGLIITGN-ATGD 199 (251)
Q Consensus 121 ~~~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~~~~~D~v~VTG~-~~g~ 199 (251)
... +++-. .++.+..++... ...+++++ .+.. .+..+...|+|.++++|. .||.
T Consensus 105 d~s--------~~~~~---~~li~~i~~~~~-g~~vvv~v------------~~~~-Ea~~a~~~Gad~I~v~g~~gTG~ 159 (297)
T 4adt_A 105 DES--------EVLTM---ADEYNHINKHKF-KTPFVCGC------------TNLG-EALRRISEGASMIRTKGEAGTGN 159 (297)
T ss_dssp EEE--------TTSCC---SCSSCCCCGGGC-SSCEEEEE------------SSHH-HHHHHHHHTCSEEEECCCTTSCC
T ss_pred EcC--------CCCCH---HHHHHHHHhcCC-CCeEEEEe------------CCHH-HHHHHHhCCCCEEEECCCcCCCc
Confidence 210 11011 112211111111 22333221 1223 344444568999999975 2231
Q ss_pred ---------------------------------CCCHHHHHHHHhcCCCCEE--EecCC-ChHhHHHhhc--CCEEEEec
Q psy9039 200 ---------------------------------PADVSQLMSVKNAVDLPIL--IGSGV-TSDNVEHYMT--ADALIIGS 241 (251)
Q Consensus 200 ---------------------------------~~~~~~l~~vr~~~~~PV~--vG~GI-~~~~v~~~~~--ADGvIVGS 241 (251)
..++++++++++.+++||+ +.||| |++++.+++. |||++|||
T Consensus 160 ~~~~v~h~~~~~~eir~l~~~~~d~L~t~~~~~~~~~~ll~~i~~~~~iPVivvA~GGI~t~~dv~~~~~~GAdgVlVGs 239 (297)
T 4adt_A 160 IIEAIKHIRTVNNEIKYLCSLDESEVYNFAKKLRAPIDLILLTRKLKRLPVVNFAAGGIATPADAAMCMQLGMDGVFVGS 239 (297)
T ss_dssp CHHHHHHHHHHHHHHHHHHHSCTTTHHHHHHHHTCCHHHHHHHHHHTSCSSEEEEESCCCSHHHHHHHHHTTCSCEEESH
T ss_pred hHHHHHHHHHhhhhhhhhccccccccccccccCCCCHHHHHHHHHhcCCCeEEEecCCCCCHHHHHHHHHcCCCEEEEhH
Confidence 3457888999998889997 89999 8999999986 99999999
Q ss_pred eEeecCe
Q psy9039 242 HFKQGGR 248 (251)
Q Consensus 242 ~~~~~g~ 248 (251)
+|.+..+
T Consensus 240 ai~~a~d 246 (297)
T 4adt_A 240 GIFESEN 246 (297)
T ss_dssp HHHTSSC
T ss_pred HHHcCCC
Confidence 9987543
|
| >3ovp_A Ribulose-phosphate 3-epimerase; iron binding, isomerase; HET: XPE; 1.70A {Homo sapiens} SCOP: c.1.2.0 PDB: 3ovq_A* 3ovr_A* 3qc3_A | Back alignment and structure |
|---|
Probab=98.66 E-value=3e-08 Score=85.57 Aligned_cols=169 Identities=17% Similarity=0.179 Sum_probs=105.0
Q ss_pred CCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhC-CCCccEEEEEeeCChHHHHHHHHHcCccceec
Q psy9039 43 PPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVL-PPSVPVGVQILSGCNKAALATAQAAGLDFIRA 121 (251)
Q Consensus 43 ~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~-~~~~P~Gvn~~~N~~~~~~~ia~a~g~~Fir~ 121 (251)
+.+.++|+ |.+.+==+ |-.|...+.-||.+ ++++|+.+ ++ .|+.+-++.|.+......+...|++++..
T Consensus 24 ~~l~~~g~-d~~h~DVm-Dg~Fvpn~~~G~~~-------v~~ir~~~~~~-~~~dvhLmv~~p~~~i~~~~~aGad~itv 93 (228)
T 3ovp_A 24 LRMLDSGA-DYLHLDVM-DGHFVPNITFGHPV-------VESLRKQLGQD-PFFDMHMMVSKPEQWVKPMAVAGANQYTF 93 (228)
T ss_dssp HHHHHTTC-SCEEEEEE-BSSSSSCBCBCHHH-------HHHHHHHHCSS-SCEEEEEECSCGGGGHHHHHHHTCSEEEE
T ss_pred HHHHHcCC-CEEEEEec-CCCcCcccccCHHH-------HHHHHHhhCCC-CcEEEEEEeCCHHHHHHHHHHcCCCEEEE
Confidence 55667889 88865222 33565555567654 55667663 22 69999888887655566666688888886
Q ss_pred ccccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHhhccCCCCCCcccHHHHHHHhhhccccEEEecCCCCCC--
Q psy9039 122 ESFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSSHAITADVDITETAKAASFFLSDGLIITGNATGD-- 199 (251)
Q Consensus 122 ~~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~~~~~D~v~VTG~~~g~-- 199 (251)
.... . ....+..+..++.|. .+-+. +++. |+.++++++. ..+|.+.+-....|.
T Consensus 94 H~Ea----~------~~~~~~i~~i~~~G~-k~gva--l~p~------t~~e~l~~~l-----~~~D~Vl~msv~pGf~G 149 (228)
T 3ovp_A 94 HLEA----T------ENPGALIKDIRENGM-KVGLA--IKPG------TSVEYLAPWA-----NQIDMALVMTVEPGFGG 149 (228)
T ss_dssp EGGG----C------SCHHHHHHHHHHTTC-EEEEE--ECTT------SCGGGTGGGG-----GGCSEEEEESSCTTTCS
T ss_pred ccCC----c------hhHHHHHHHHHHcCC-CEEEE--EcCC------CCHHHHHHHh-----ccCCeEEEeeecCCCCC
Confidence 4211 1 123455566666665 11111 2211 3333333221 236776542222221
Q ss_pred ----CCCHHHHHHHHhcC-CCCEEEecCCChHhHHHhhc--CCEEEEeceEee
Q psy9039 200 ----PADVSQLMSVKNAV-DLPILIGSGVTSDNVEHYMT--ADALIIGSHFKQ 245 (251)
Q Consensus 200 ----~~~~~~l~~vr~~~-~~PV~vG~GI~~~~v~~~~~--ADGvIVGS~~~~ 245 (251)
+..+++++++|+.. +.|+.+.|||+++|+.++.+ ||++++||++.+
T Consensus 150 q~f~~~~l~ki~~lr~~~~~~~I~VdGGI~~~t~~~~~~aGAd~~VvGsaIf~ 202 (228)
T 3ovp_A 150 QKFMEDMMPKVHWLRTQFPSLDIEVDGGVGPDTVHKCAEAGANMIVSGSAIMR 202 (228)
T ss_dssp CCCCGGGHHHHHHHHHHCTTCEEEEESSCSTTTHHHHHHHTCCEEEESHHHHT
T ss_pred cccCHHHHHHHHHHHHhcCCCCEEEeCCcCHHHHHHHHHcCCCEEEEeHHHhC
Confidence 22467899999876 69999999999999999986 999999999765
|
| >2uva_G Fatty acid synthase beta subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; HET: FMN; 3.10A {Thermomyces lanuginosus} PDB: 2uvc_G* | Back alignment and structure |
|---|
Probab=98.66 E-value=6.3e-08 Score=105.19 Aligned_cols=149 Identities=17% Similarity=0.271 Sum_probs=97.9
Q ss_pred HHHHHHHHHHHHHHhCCCCccEEEEEeeCChH------HHHHHHHHcCccc--eecccccccccCCCceeecCcchhHHH
Q psy9039 74 ITANMTRLCAEIRKVLPPSVPVGVQILSGCNK------AALATAQAAGLDF--IRAESFVFGHMADEGLMNAQAGPLLRY 145 (251)
Q Consensus 74 i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~------~~~~ia~a~g~~F--ir~~~~~~~~~~~~Gli~~da~e~~~~ 145 (251)
+.+.+...++++|+.++...|+|+|++.-.+. ..+..+...|.++ +.. ..| .|..+++.++
T Consensus 619 ~~e~l~~~i~~vk~~~~~~~p~gvN~~~~~p~~~~~~~~~~~~~~~~gv~i~gv~~---------~~G--~p~~e~~~~~ 687 (2060)
T 2uva_G 619 NAQKMSDAISKIEKAIPPGRGITVNLIYVNPRAMGWQIPLLGRLRADGVPIEGLTI---------GAG--VPSIEVANEY 687 (2060)
T ss_dssp SHHHHHHHHHHHGGGSCTTCCEEEEEETTCTTHHHHHHHHHHHHHTTTCCEEEEEE---------ESS--CCCHHHHHHH
T ss_pred CHHHHHHHHHHHHhhcccCCCeEecccccCcccchhHHHHHHHHHHcCCCcceEee---------cCC--CCCHHHHHHH
Confidence 35567788899998872115999999984322 2345555555555 332 112 2333456777
Q ss_pred HHhcCCCcchhhhhhHhhccCCCCCCcccHHHHHHHhhhccccEEE---ecCCCCCCCCC--------HHHHHHHHhcCC
Q psy9039 146 RKQIGADNVLVFTDIKKKHSSHAITADVDITETAKAASFFLSDGLI---ITGNATGDPAD--------VSQLMSVKNAVD 214 (251)
Q Consensus 146 r~~l~~~~i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~~~~~D~v~---VTG~~~g~~~~--------~~~l~~vr~~~~ 214 (251)
-+.++...+.++ + +.....+.+......|+|+++ ++|.++|.... +.++.++|+..+
T Consensus 688 l~~~gi~~i~~v---------~---~~~~a~~~v~~l~~aG~D~iV~~q~~G~eaGGH~g~~d~~~~~l~lv~~i~~~~~ 755 (2060)
T 2uva_G 688 IQTLGIRHISFK---------P---GSVDAIQQVINIAKANPTFPIILQWTGGRGGGHHSFEDFHQPILLMYSRIRKCSN 755 (2060)
T ss_dssp HHHSCCSEEEEC---------C---CSHHHHHHHHHHHHHCTTSCEEEEECCTTSSSSCCSCCSHHHHHHHHHHHHTSTT
T ss_pred HHHcCCeEEEec---------C---CHHHHHHHHHHHHHcCCCEEEEeeeEcccCCCCCCcccccchHHHHHHHHHHHcC
Confidence 777765443332 1 111111111222346999999 99977665432 467889999999
Q ss_pred CCEEEecCC-ChHhHHHhh-----------c--CCEEEEeceEee
Q psy9039 215 LPILIGSGV-TSDNVEHYM-----------T--ADALIIGSHFKQ 245 (251)
Q Consensus 215 ~PV~vG~GI-~~~~v~~~~-----------~--ADGvIVGS~~~~ 245 (251)
+||+++||| +++.+.+++ . ||||.+||.|+-
T Consensus 756 ipviaaGGI~~g~~i~aaltg~ws~~~g~palGAdgV~~GT~f~~ 800 (2060)
T 2uva_G 756 IVLVAGSGFGGSEDTYPYLTGSWSTKFGYPPMPFDGCMFGSRMMT 800 (2060)
T ss_dssp EEEEEESSCCSHHHHHHHHHTCGGGTTTSCCCCCSCEEESGGGGG
T ss_pred CCEEEeCCCCCHHHHHHHhcCcchhhcCCCCCCCCEEEEchhhhc
Confidence 999999999 899999999 5 999999999864
|
| >2zbt_A Pyridoxal biosynthesis lyase PDXS; pyridoxine biosynthesis, structural genomics, NPPSFA; 1.65A {Thermus thermophilus} PDB: 2iss_A* | Back alignment and structure |
|---|
Probab=98.65 E-value=9.4e-09 Score=91.48 Aligned_cols=172 Identities=20% Similarity=0.201 Sum_probs=100.4
Q ss_pred CCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHHHHHHHHcCccceecc
Q psy9039 43 PPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQAAGLDFIRAE 122 (251)
Q Consensus 43 ~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g~~Fir~~ 122 (251)
+++.++|+ ++|.+ |+ ++|+......|... ......++++++.++ +|+.++.-... ...+..+...|++++. .
T Consensus 35 ~~~~~~Ga-~~i~~-~e-~v~~~~~~~~G~~~-~~~~~~i~~i~~~~~--~Pvi~~~~~~~-~~~~~~~~~aGad~v~-~ 106 (297)
T 2zbt_A 35 VIAEEAGA-VAVMA-LE-RVPADIRAQGGVAR-MSDPKIIKEIMAAVS--IPVMAKVRIGH-FVEAMILEAIGVDFID-E 106 (297)
T ss_dssp HHHHHHTC-SEEEE-CS-SCHHHHHHTTCCCC-CCCHHHHHHHHTTCS--SCEEEEEETTC-HHHHHHHHHTTCSEEE-E
T ss_pred HHHHHCCC-cEEEe-cc-ccchHHHhhcCCcc-CCCHHHHHHHHHhcC--CCeEEEeccCC-HHHHHHHHHCCCCEEe-e
Confidence 56778999 99986 22 34432100000000 001246778888887 79877654443 5667777788888882 1
Q ss_pred cccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHhhccCCCCCCcccHHHHHHHhhhccccEEEecCCCC-----
Q psy9039 123 SFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSSHAITADVDITETAKAASFFLSDGLIITGNAT----- 197 (251)
Q Consensus 123 ~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~~~~~D~v~VTG~~~----- 197 (251)
.+. +...++.+..++... .+.+..++ .+.++ +..+...|+|.+.++|...
T Consensus 107 ~~~-----------~~~~~~~~~~~~~~~-~i~l~~~v------------~~~~~-~~~a~~~Gad~I~v~G~~~~g~~~ 161 (297)
T 2zbt_A 107 SEV-----------LTPADEEHHIDKWKF-KVPFVCGA------------RNLGE-ALRRIAEGAAMIRTKGEAGTGNVV 161 (297)
T ss_dssp ETT-----------SCCSCSSCCCCGGGC-SSCEEEEE------------SSHHH-HHHHHHTTCSEEEECCCSSSCCTH
T ss_pred eCC-----------CChHHHHHHHHHhCC-CceEEeec------------CCHHH-HHHHHHcCCCEEEEcccccCcchH
Confidence 110 010111111111111 22222111 12222 3334457899998886310
Q ss_pred --------------------C---------CCCCHHHHHHHHhcCCCCEE--EecCC-ChHhHHHhhc--CCEEEEeceE
Q psy9039 198 --------------------G---------DPADVSQLMSVKNAVDLPIL--IGSGV-TSDNVEHYMT--ADALIIGSHF 243 (251)
Q Consensus 198 --------------------g---------~~~~~~~l~~vr~~~~~PV~--vG~GI-~~~~v~~~~~--ADGvIVGS~~ 243 (251)
+ ....++.++++++.+++|++ +.||| |++++.+++. |||++|||+|
T Consensus 162 e~~~~~~~~~~~i~~~~g~t~~~~~~~~~~~~~~~~~i~~l~~~~~~pvi~~a~GGI~~~e~i~~~~~aGadgvvvGsai 241 (297)
T 2zbt_A 162 EAVRHARTMWKEIRYVQSLREDELMAYAKEIGAPFELVKWVHDHGRLPVVNFAAGGIATPADAALMMHLGMDGVFVGSGI 241 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHTCCHHHHHHHHHHSSCSSCEEBCSSCCSHHHHHHHHHTTCSEEEECGGG
T ss_pred HHHhhHHHHHHHHHHcCCcCCCCchhhhhcchhhHHHHHHHHHhcCCCcEEEeeCCCCCHHHHHHHHHcCCCEEEEchHH
Confidence 0 12346788899988899998 99999 8999999886 9999999999
Q ss_pred eecC
Q psy9039 244 KQGG 247 (251)
Q Consensus 244 ~~~g 247 (251)
.+.+
T Consensus 242 ~~~~ 245 (297)
T 2zbt_A 242 FKSG 245 (297)
T ss_dssp GGSS
T ss_pred hCCC
Confidence 8543
|
| >2uv8_G Fatty acid synthase subunit beta (FAS1); fatty acid biosynthesis, malonyl/palmitoyl transferase, phosphopantetheine, transferase; HET: GVL FMN; 3.10A {Saccharomyces cerevisiae} PDB: 2vkz_G* 3hmj_G* | Back alignment and structure |
|---|
Probab=98.65 E-value=4.7e-08 Score=105.83 Aligned_cols=149 Identities=15% Similarity=0.225 Sum_probs=96.6
Q ss_pred HHHHHHHHHHHHHHhCCCCccEEEEEeeCChH------HHHHHHHHcCccc--eecccccccccCCCceeecCcchhHHH
Q psy9039 74 ITANMTRLCAEIRKVLPPSVPVGVQILSGCNK------AALATAQAAGLDF--IRAESFVFGHMADEGLMNAQAGPLLRY 145 (251)
Q Consensus 74 i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~------~~~~ia~a~g~~F--ir~~~~~~~~~~~~Gli~~da~e~~~~ 145 (251)
+.+.+...|+++|+.++...|+|+|+++..+. .-+.++...|.++ +-.. . | +|..++..++
T Consensus 626 ~~e~l~~~I~~~~~~t~~~~~~gvN~~~~~~~~~~~~~~~~~~~~~~gv~i~~v~~~------a---g--~p~~~~~~~~ 694 (2051)
T 2uv8_G 626 SAAGMTAAIDSVVSQIEKGSTFGINLIYVNPFMLQWGIPLIKELRSKGYPIQFLTIG------A---G--VPSLEVASEY 694 (2051)
T ss_dssp SHHHHHHHHHHHHHHSCTTCCEEEEEETTCTTHHHHHHHHHHHHHHTTCSEEEEEEE------S---S--CCCHHHHHHH
T ss_pred CHHHHHHHHHHHHHhcCCCCceEEEEeecChhhhhhhHHHHHHHHHcCCCcceEEec------C---C--CCchhhHHHH
Confidence 34568889999999875325999998764321 2234444555554 2211 0 1 2333445567
Q ss_pred HHhcCCCcchhhhhhHhhccCCCCCCcccHHHHHHHhhhccccE---EEecCCCCCCCCC--------HHHHHHHHhcCC
Q psy9039 146 RKQIGADNVLVFTDIKKKHSSHAITADVDITETAKAASFFLSDG---LIITGNATGDPAD--------VSQLMSVKNAVD 214 (251)
Q Consensus 146 r~~l~~~~i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~~~~~D~---v~VTG~~~g~~~~--------~~~l~~vr~~~~ 214 (251)
-+++|. +++. .+ + +.....+.+..+...|+|+ +.++|.+.|+... +.++.++++.++
T Consensus 695 i~~lG~---~vi~---~~---~---~~~~a~~~~~~~~~~g~d~~ii~~~~G~eaGGH~g~~d~~~~~l~l~~~v~~~~~ 762 (2051)
T 2uv8_G 695 IETLGL---KYLG---LK---P---GSIDAISQVINIAKAHPNFPIALQWTGGRGGGHHSFEDAHTPMLQMYSKIRRHPN 762 (2051)
T ss_dssp HHHSCC---SCEE---EC---C---CSHHHHHHHHHHHHHSTTSCEEEEECCSSCSEECCSCCSSHHHHHHHHHHTTCTT
T ss_pred HHHcCC---EEEE---ec---C---chHHHHHHHHHHHHhCCCceeEEEEEccCcCCCCCcccccccHHHHHHHHHhcCC
Confidence 777754 4431 11 1 1222333344445569999 4788987775321 245789999999
Q ss_pred CCEEEecCC-ChHhHHHhh-----------c--CCEEEEeceEee
Q psy9039 215 LPILIGSGV-TSDNVEHYM-----------T--ADALIIGSHFKQ 245 (251)
Q Consensus 215 ~PV~vG~GI-~~~~v~~~~-----------~--ADGvIVGS~~~~ 245 (251)
+||++|||| +.+.+..++ . ||||.+||+|+-
T Consensus 763 ipviaaGGi~dg~~~~aaL~g~w~~~~g~~~lgadGv~~GTrf~~ 807 (2051)
T 2uv8_G 763 IMLIFGSGFGSADDTYPYLTGEWSTKFDYPPMPFDGFLFGSRVMI 807 (2051)
T ss_dssp BCCEEESSCCSHHHHTHHHHTCGGGTTTCCCCCCSCEECSGGGTT
T ss_pred ceEEEeCCCCCHHHHHHHHccccccccCccCCCCceeeechHHHh
Confidence 999999999 899988887 5 999999999964
|
| >3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp} | Back alignment and structure |
|---|
Probab=98.62 E-value=5.4e-08 Score=84.98 Aligned_cols=169 Identities=18% Similarity=0.203 Sum_probs=107.1
Q ss_pred CCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHHHHHHHHcCccceecc
Q psy9039 43 PPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQAAGLDFIRAE 122 (251)
Q Consensus 43 ~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g~~Fir~~ 122 (251)
+.+.++|+ |.+.+==+ |-.|...+.-||. +++++|+.+++ .|+-+-+..+++......+...|++++-..
T Consensus 47 ~~l~~~G~-d~lHvDVm-Dg~FVpnit~G~~-------~v~~lr~~~p~-~~ldvHLmv~~p~~~i~~~~~aGAd~itvH 116 (246)
T 3inp_A 47 KAVLAAGA-DNIHFDVM-DNHYVPNLTFGPM-------VLKALRDYGIT-AGMDVHLMVKPVDALIESFAKAGATSIVFH 116 (246)
T ss_dssp HHHHHTTC-CCEEEEEE-BSSSSSCBCCCHH-------HHHHHHHHTCC-SCEEEEEECSSCHHHHHHHHHHTCSEEEEC
T ss_pred HHHHHcCC-CEEEEEec-CCCcCcchhcCHH-------HHHHHHHhCCC-CeEEEEEeeCCHHHHHHHHHHcCCCEEEEc
Confidence 55677899 98865322 3457666667764 45667777733 699998888876555666667888888864
Q ss_pred cccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHhhccCCCCCCcccHHHHHHHhhhccccEEEecCCCCCC---
Q psy9039 123 SFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSSHAITADVDITETAKAASFFLSDGLIITGNATGD--- 199 (251)
Q Consensus 123 ~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~~~~~D~v~VTG~~~g~--- 199 (251)
... . ....+.++..++.|. .+-+ .+++. |+.++++.+. ..+|.+.+-....|.
T Consensus 117 ~Ea----~------~~~~~~i~~ir~~G~-k~Gv--alnp~------Tp~e~l~~~l-----~~vD~VlvMsV~PGfgGQ 172 (246)
T 3inp_A 117 PEA----S------EHIDRSLQLIKSFGI-QAGL--ALNPA------TGIDCLKYVE-----SNIDRVLIMSVNPGFGGQ 172 (246)
T ss_dssp GGG----C------SCHHHHHHHHHTTTS-EEEE--EECTT------CCSGGGTTTG-----GGCSEEEEECSCTTC--C
T ss_pred ccc----c------hhHHHHHHHHHHcCC-eEEE--EecCC------CCHHHHHHHH-----hcCCEEEEeeecCCCCCc
Confidence 211 1 134455666666665 2222 12222 3333333221 257877653322221
Q ss_pred ---CCCHHHHHHHHhcC-----CCCEEEecCCChHhHHHhhc--CCEEEEeceEee
Q psy9039 200 ---PADVSQLMSVKNAV-----DLPILIGSGVTSDNVEHYMT--ADALIIGSHFKQ 245 (251)
Q Consensus 200 ---~~~~~~l~~vr~~~-----~~PV~vG~GI~~~~v~~~~~--ADGvIVGS~~~~ 245 (251)
+..+++++++|+.. ++|+.+.|||+++|+.++.+ ||.+++||++.+
T Consensus 173 ~fi~~~l~KI~~lr~~~~~~~~~~~I~VDGGI~~~ti~~~~~aGAD~~V~GSaIf~ 228 (246)
T 3inp_A 173 KFIPAMLDKAKEISKWISSTDRDILLEIDGGVNPYNIAEIAVCGVNAFVAGSAIFN 228 (246)
T ss_dssp CCCTTHHHHHHHHHHHHHHHTSCCEEEEESSCCTTTHHHHHTTTCCEEEESHHHHT
T ss_pred ccchHHHHHHHHHHHHHHhcCCCeeEEEECCcCHHHHHHHHHcCCCEEEEehHHhC
Confidence 23357888888653 58999999999999999996 999999999764
|
| >1yad_A Regulatory protein TENI; TIM barrel, transcription; 2.10A {Bacillus subtilis} PDB: 3qh2_A* | Back alignment and structure |
|---|
Probab=98.60 E-value=4.8e-08 Score=83.05 Aligned_cols=155 Identities=16% Similarity=0.127 Sum_probs=90.4
Q ss_pred CCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHHHHHHHHcCccceecc
Q psy9039 43 PPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQAAGLDFIRAE 122 (251)
Q Consensus 43 ~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g~~Fir~~ 122 (251)
..+.++|+ |.+.+ +.+. .. ......+++++++... +++ .++.|+. ..++...|++.+...
T Consensus 36 ~~~~~~G~-~~v~l----r~~~-----~~---~~~~~~~~~~l~~~~~---~~~-~l~v~~~---~~~a~~~gad~v~l~ 95 (221)
T 1yad_A 36 IITIQNEV-DFIHI----RERS-----KS---AADILKLLDLIFEGGI---DKR-KLVMNGR---VDIALFSTIHRVQLP 95 (221)
T ss_dssp HHHHGGGC-SEEEE----CCTT-----SC---HHHHHHHHHHHHHTTC---CGG-GEEEESC---HHHHHTTTCCEEEEC
T ss_pred HHHHHCCC-CEEEE----ccCC-----CC---HHHHHHHHHHHHHhcC---cCC-eEEEeCh---HHHHHHcCCCEEEeC
Confidence 34567899 98864 3221 11 2234566777776532 333 4445552 466677777877642
Q ss_pred cccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHhhccCCCCCCcccHHHHHHHhhhccccEEEecC-----CCC
Q psy9039 123 SFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSSHAITADVDITETAKAASFFLSDGLIITG-----NAT 197 (251)
Q Consensus 123 ~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~~~~~D~v~VTG-----~~~ 197 (251)
. +.......++..+ +..+.. +.+ +.++ ++.+...++|++++.. ...
T Consensus 96 ~--------------~~~~~~~~~~~~~--~~~ig~------sv~------t~~~-~~~a~~~gaD~i~~~~~f~~~~~~ 146 (221)
T 1yad_A 96 S--------------GSFSPKQIRARFP--HLHIGR------SVH------SLEE-AVQAEKEDADYVLFGHVFETDCKK 146 (221)
T ss_dssp T--------------TSCCHHHHHHHCT--TCEEEE------EEC------SHHH-HHHHHHTTCSEEEEECCC------
T ss_pred C--------------CccCHHHHHHHCC--CCEEEE------EcC------CHHH-HHHHHhCCCCEEEECCccccCCCC
Confidence 1 0011222233322 222211 111 2233 4555557899998732 222
Q ss_pred CCC-CCHHHHHHHHhcCCCCEEEecCCChHhHHHhhc--CCEEEEeceEeec
Q psy9039 198 GDP-ADVSQLMSVKNAVDLPILIGSGVTSDNVEHYMT--ADALIIGSHFKQG 246 (251)
Q Consensus 198 g~~-~~~~~l~~vr~~~~~PV~vG~GI~~~~v~~~~~--ADGvIVGS~~~~~ 246 (251)
|.. ..++.++++++..++||++.||||++|+.+++. |||+.|||+|...
T Consensus 147 g~~~~~~~~l~~~~~~~~~pvia~GGI~~~nv~~~~~~Ga~gv~vgs~i~~~ 198 (221)
T 1yad_A 147 GLEGRGVSLLSDIKQRISIPVIAIGGMTPDRLRDVKQAGADGIAVMSGIFSS 198 (221)
T ss_dssp ----CHHHHHHHHHHHCCSCEEEESSCCGGGHHHHHHTTCSEEEESHHHHTS
T ss_pred CCCCCCHHHHHHHHHhCCCCEEEECCCCHHHHHHHHHcCCCEEEEhHHhhCC
Confidence 212 246788888887899999999999999999996 9999999998753
|
| >3ctl_A D-allulose-6-phosphate 3-epimerase; D-glucitol 6-phosphate, (beta/alpha)8 barrel, carbohydrate metabolism, isomerase; HET: S6P; 2.20A {Escherichia coli} PDB: 3ct7_A* | Back alignment and structure |
|---|
Probab=98.60 E-value=3e-08 Score=85.81 Aligned_cols=169 Identities=18% Similarity=0.212 Sum_probs=107.1
Q ss_pred CCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHHHHHHHHcCccceecc
Q psy9039 43 PPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQAAGLDFIRAE 122 (251)
Q Consensus 43 ~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g~~Fir~~ 122 (251)
+.+ ++|+ |.+.+-=+ |-.|...+.-||. +++++|+.++ .|+-+-++.+++..-...+...|++++-..
T Consensus 20 ~~~-~~ga-d~lHvDvm-DG~fvpn~t~G~~-------~v~~lr~~~~--~~~dvhLmv~dp~~~i~~~~~aGAd~itvh 87 (231)
T 3ctl_A 20 EFI-DSHA-DYFHIDIM-DGHFVPNLTLSPF-------FVSQVKKLAT--KPLDCHLMVTRPQDYIAQLARAGADFITLH 87 (231)
T ss_dssp HHH-HTTC-SCEEEEEE-CSSSSSCCCBCHH-------HHHHHHTTCC--SCEEEEEESSCGGGTHHHHHHHTCSEEEEC
T ss_pred HHH-HcCC-CEEEEEEE-eCccCccchhcHH-------HHHHHHhccC--CcEEEEEEecCHHHHHHHHHHcCCCEEEEC
Confidence 556 7888 88765433 4456555556764 5677787776 688888888875444566667888888754
Q ss_pred cccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHhhccCCCCCCcccHHHHHHHhhhccccEEEecCCCCC----
Q psy9039 123 SFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSSHAITADVDITETAKAASFFLSDGLIITGNATG---- 198 (251)
Q Consensus 123 ~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~~~~~D~v~VTG~~~g---- 198 (251)
... +.+...+..+..++.|. .+-+ .+++. |+.++++.+. .++|.+.+-....|
T Consensus 88 ~Ea---------~~~~~~~~i~~i~~~G~-k~gv--~lnp~------tp~~~~~~~l-----~~~D~VlvmsV~pGfggQ 144 (231)
T 3ctl_A 88 PET---------INGQAFRLIDEIRRHDM-KVGL--ILNPE------TPVEAMKYYI-----HKADKITVMTVDPGFAGQ 144 (231)
T ss_dssp GGG---------CTTTHHHHHHHHHHTTC-EEEE--EECTT------CCGGGGTTTG-----GGCSEEEEESSCTTCSSC
T ss_pred ccc---------CCccHHHHHHHHHHcCC-eEEE--EEECC------CcHHHHHHHH-----hcCCEEEEeeeccCcCCc
Confidence 211 01134456667777765 2222 12222 2323332221 36888765333222
Q ss_pred --CCCCHHHHHHHHhcC-----CCCEEEecCCChHhHHHhhc--CCEEEEe-ceEeec
Q psy9039 199 --DPADVSQLMSVKNAV-----DLPILIGSGVTSDNVEHYMT--ADALIIG-SHFKQG 246 (251)
Q Consensus 199 --~~~~~~~l~~vr~~~-----~~PV~vG~GI~~~~v~~~~~--ADGvIVG-S~~~~~ 246 (251)
.+..+++++++|+.. ++||.+.|||+++|+.++.+ ||++|+| |++.+.
T Consensus 145 ~f~~~~l~kI~~lr~~~~~~~~~~~I~VdGGI~~~~~~~~~~aGAd~~V~G~saif~~ 202 (231)
T 3ctl_A 145 PFIPEMLDKLAELKAWREREGLEYEIEVDGSCNQATYEKLMAAGADVFIVGTSGLFNH 202 (231)
T ss_dssp CCCTTHHHHHHHHHHHHHHHTCCCEEEEESCCSTTTHHHHHHHTCCEEEECTTTTGGG
T ss_pred cccHHHHHHHHHHHHHHhccCCCceEEEECCcCHHHHHHHHHcCCCEEEEccHHHhCC
Confidence 122357788888765 68999999999999999986 9999999 998753
|
| >1vc4_A Indole-3-glycerol phosphate synthase; lyase, tryptophan biosynthesis, riken structural genomics/PR initiative, RSGI, structural genomics; 1.80A {Thermus thermophilus} SCOP: c.1.2.4 | Back alignment and structure |
|---|
Probab=98.58 E-value=8.2e-08 Score=84.08 Aligned_cols=165 Identities=15% Similarity=0.078 Sum_probs=109.0
Q ss_pred CCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHHHHHHHHcCccceecc
Q psy9039 43 PPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQAAGLDFIRAE 122 (251)
Q Consensus 43 ~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g~~Fir~~ 122 (251)
+.++++|+ ++|-+-..- .|... ...-++++|+.++ +|+-.--|..+ .++...|.+.|++.+...
T Consensus 72 ~~~~~~GA-~~isvlt~~--~~f~G----------~~~~l~~i~~~v~--lPvl~kdfI~d-~~qi~~a~~~GAD~VlL~ 135 (254)
T 1vc4_A 72 LAYARGGA-RAVSVLTEP--HRFGG----------SLLDLKRVREAVD--LPLLRKDFVVD-PFMLEEARAFGASAALLI 135 (254)
T ss_dssp HHHHHTTC-SEEEEECCC--SSSCC----------CHHHHHHHHHHCC--SCEEEESCCCS-HHHHHHHHHTTCSEEEEE
T ss_pred HHHHHcCC-CEEEEecch--hhhcc----------CHHHHHHHHHhcC--CCEEECCcCCC-HHHHHHHHHcCCCEEEEC
Confidence 66889999 999874332 22221 2235677888888 89887777766 567777888999988863
Q ss_pred cccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHhhccCCCCCCcccHHHHHHHhhhccccEEEecCCCC-CCCC
Q psy9039 123 SFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSSHAITADVDITETAKAASFFLSDGLIITGNAT-GDPA 201 (251)
Q Consensus 123 ~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~~~~~D~v~VTG~~~-g~~~ 201 (251)
.. - +.....++..+.+.+|.+ +.+ + ++ +.++ ++.+...++|.++++.... ....
T Consensus 136 ~~--------~-l~~~l~~l~~~a~~lGl~-~lv--e------v~------~~~E-~~~a~~~gad~IGvn~~~l~~~~~ 190 (254)
T 1vc4_A 136 VA--------L-LGELTGAYLEEARRLGLE-ALV--E------VH------TERE-LEIALEAGAEVLGINNRDLATLHI 190 (254)
T ss_dssp HH--------H-HGGGHHHHHHHHHHHTCE-EEE--E------EC------SHHH-HHHHHHHTCSEEEEESBCTTTCCB
T ss_pred cc--------c-hHHHHHHHHHHHHHCCCe-EEE--E------EC------CHHH-HHHHHHcCCCEEEEccccCcCCCC
Confidence 11 0 112455566666677752 211 0 11 1223 3445456789998866422 2344
Q ss_pred CHHHHHHHHhcC-----CCCEEEecCC-ChHhHHHhhc-CCEEEEeceEeecCe
Q psy9039 202 DVSQLMSVKNAV-----DLPILIGSGV-TSDNVEHYMT-ADALIIGSHFKQGGR 248 (251)
Q Consensus 202 ~~~~l~~vr~~~-----~~PV~vG~GI-~~~~v~~~~~-ADGvIVGS~~~~~g~ 248 (251)
+++.+.++++.. ++|++..||| |++++.++.. +||++|||+|.+..+
T Consensus 191 dl~~~~~L~~~i~~~~~~~~vIAegGI~s~~dv~~l~~Ga~gvlVGsAl~~~~d 244 (254)
T 1vc4_A 191 NLETAPRLGRLARKRGFGGVLVAESGYSRKEELKALEGLFDAVLIGTSLMRAPD 244 (254)
T ss_dssp CTTHHHHHHHHHHHTTCCSEEEEESCCCSHHHHHTTTTTCSEEEECHHHHTSSC
T ss_pred CHHHHHHHHHhCccccCCCeEEEEcCCCCHHHHHHHHcCCCEEEEeHHHcCCCC
Confidence 555556665554 7899999999 5999999998 999999999988654
|
| >1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf; substrate channeling, amidotransferase, TIM-barrel AS A SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae} SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A 1ox4_A | Back alignment and structure |
|---|
Probab=98.55 E-value=6.5e-08 Score=93.49 Aligned_cols=192 Identities=19% Similarity=0.196 Sum_probs=119.2
Q ss_pred CCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCCh----------HHHHHHHH
Q psy9039 43 PPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCN----------KAALATAQ 112 (251)
Q Consensus 43 ~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~----------~~~~~ia~ 112 (251)
+.+.+.|+ |.|.+-|..+. . .+|.....+.++++++++.++ +|+-+..=..+. .+......
T Consensus 287 ~~~~~~Ga-~~l~~~dl~~~--~----~~~~~~~~~~~~i~~i~~~~~--ipi~vgGGIr~~~d~~~~~~~~~~~a~~~l 357 (555)
T 1jvn_A 287 QKYYQQGA-DEVTFLNITSF--R----DCPLKDTPMLEVLKQAAKTVF--VPLTVGGGIKDIVDVDGTKIPALEVASLYF 357 (555)
T ss_dssp HHHHHTTC-SEEEEEEEC---------CCCGGGCHHHHHHHHHTTTCC--SCEEEESSCSCEECTTCCEECHHHHHHHHH
T ss_pred HHHHHcCC-CEEEEEeCCcc--c----cccCCCchHHHHHHHHHhhCC--CcEEEeCccccchhcccccchHHHHHHHHH
Confidence 56778899 99999887753 1 223233336677888888777 787766543331 12233344
Q ss_pred HcCccceecccccccc-----cCCCceeecCcchhHHHHHhcCCCcchhhhhhHhh------------------------
Q psy9039 113 AAGLDFIRAESFVFGH-----MADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKK------------------------ 163 (251)
Q Consensus 113 a~g~~Fir~~~~~~~~-----~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~k------------------------ 163 (251)
..|++-+-++..+-.. ....|.. +...+.+..+++|...+-+-.|+...
T Consensus 358 ~aGad~V~igt~~~~~~~~~~~~~~~~~--~~~~i~~~~~~~g~~~ivv~iD~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 435 (555)
T 1jvn_A 358 RSGADKVSIGTDAVYAAEKYYELGNRGD--GTSPIETISKAYGAQAVVISVDPKRVYVNSQADTKNKVFETEYPGPNGEK 435 (555)
T ss_dssp HHTCSEEEECHHHHHHHHHHHHTTSCCC--SCSHHHHHHHHHCGGGEEEEECEEEEEESSGGGCSSCCEECSSCCTTCCC
T ss_pred HcCCCEEEECCHHhhCchhhcccccccc--CHHHHHHHHHHhCCCcEEEEEEccccccccccccccccccccccCCCCCc
Confidence 5677877765322110 0122222 33455567777764333222233210
Q ss_pred --------ccCCCCCCcccHHHHHHHhhhccccEEEecCCCC-CC--CCCHHHHHHHHhcCCCCEEEecCC-ChHhHHHh
Q psy9039 164 --------HSSHAITADVDITETAKAASFFLSDGLIITGNAT-GD--PADVSQLMSVKNAVDLPILIGSGV-TSDNVEHY 231 (251)
Q Consensus 164 --------~~~~~~~~~~~i~~~a~~a~~~~~D~v~VTG~~~-g~--~~~~~~l~~vr~~~~~PV~vG~GI-~~~~v~~~ 231 (251)
+|.. ..++.+..+.++.++..|+|.+++|+... |. ..++++++++++.+++||++.||| +++++.++
T Consensus 436 ~~~~~v~~~Gw~-~~~~~~~~e~a~~~~~~Ga~~il~t~~~~dG~~~G~d~~li~~l~~~~~iPVIasGGi~s~~d~~~~ 514 (555)
T 1jvn_A 436 YCWYQCTIKGGR-ESRDLGVWELTRACEALGAGEILLNCIDKDGSNSGYDLELIEHVKDAVKIPVIASSGAGVPEHFEEA 514 (555)
T ss_dssp EEEEEEEETTTT-EEEEEEHHHHHHHHHHTTCCEEEECCGGGTTTCSCCCHHHHHHHHHHCSSCEEECSCCCSHHHHHHH
T ss_pred ceeEEEEEecCc-cCCCCCHHHHHHHHHHcCCCEEEEeCCCCCCCCCCCCHHHHHHHHHhCCccEEEECCCCCHHHHHHH
Confidence 0000 00123456778888878999999998533 22 247899999999999999999999 79999998
Q ss_pred hc---CCEEEEeceEeec
Q psy9039 232 MT---ADALIIGSHFKQG 246 (251)
Q Consensus 232 ~~---ADGvIVGS~~~~~ 246 (251)
++ |||+++||+|..+
T Consensus 515 ~~~~G~~gvivg~a~~~~ 532 (555)
T 1jvn_A 515 FLKTRADACLGAGMFHRG 532 (555)
T ss_dssp HHHSCCSEEEESHHHHTT
T ss_pred HHhcCChHHHHHHHHHcC
Confidence 73 9999999998543
|
| >1wv2_A Thiazole moeity, thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI; 2.90A {Pseudomonas aeruginosa} SCOP: c.1.31.1 | Back alignment and structure |
|---|
Probab=98.55 E-value=1.5e-07 Score=82.37 Aligned_cols=116 Identities=16% Similarity=0.241 Sum_probs=85.3
Q ss_pred cCccceecccccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHhhccCCCCCCcccHHHHHHHhhhccccEEEec
Q psy9039 114 AGLDFIRAESFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSSHAITADVDITETAKAASFFLSDGLIIT 193 (251)
Q Consensus 114 ~g~~Fir~~~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~~~~~D~v~VT 193 (251)
.+.+|++.. -.+++-...||..+.++..+++-.++++++ |.++++ ...++..+..|++++..-
T Consensus 101 ~~~~~iKlE-----v~~d~~~llpD~~~tv~aa~~L~~~Gf~Vl---------py~~dd---~~~akrl~~~G~~aVmPl 163 (265)
T 1wv2_A 101 DGHNLVKLE-----VLADQKTLFPNVVETLKAAEQLVKDGFDVM---------VYTSDD---PIIARQLAEIGCIAVMPL 163 (265)
T ss_dssp TSCCEEEEC-----CBSCTTTCCBCHHHHHHHHHHHHTTTCEEE---------EEECSC---HHHHHHHHHSCCSEEEEC
T ss_pred CCCCeEEEE-----eecCccccCcCHHHHHHHHHHHHHCCCEEE---------EEeCCC---HHHHHHHHHhCCCEEEeC
Confidence 345788864 244566778898899988888855556654 221222 334556566799999885
Q ss_pred CCC--CCCC-CCHHHHHHHHhcCCCCEEEecCC-ChHhHHHhhc--CCEEEEeceEeec
Q psy9039 194 GNA--TGDP-ADVSQLMSVKNAVDLPILIGSGV-TSDNVEHYMT--ADALIIGSHFKQG 246 (251)
Q Consensus 194 G~~--~g~~-~~~~~l~~vr~~~~~PV~vG~GI-~~~~v~~~~~--ADGvIVGS~~~~~ 246 (251)
|.- +|.. .+.++|+++++..++||++++|| ||++++++++ ||||.|||+|.+.
T Consensus 164 g~pIGsG~Gi~~~~lI~~I~e~~~vPVI~eGGI~TPsDAa~AmeLGAdgVlVgSAI~~a 222 (265)
T 1wv2_A 164 AGLIGSGLGICNPYNLRIILEEAKVPVLVDAGVGTASDAAIAMELGCEAVLMNTAIAHA 222 (265)
T ss_dssp SSSTTCCCCCSCHHHHHHHHHHCSSCBEEESCCCSHHHHHHHHHHTCSEEEESHHHHTS
T ss_pred CccCCCCCCcCCHHHHHHHHhcCCCCEEEeCCCCCHHHHHHHHHcCCCEEEEChHHhCC
Confidence 642 2322 36889999999889999999999 7999999997 9999999998653
|
| >3ceu_A Thiamine phosphate pyrophosphorylase; TIM barrel-like protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=98.48 E-value=2.9e-07 Score=77.92 Aligned_cols=66 Identities=12% Similarity=0.164 Sum_probs=50.4
Q ss_pred HHHhhhccccEEEe-----cCCCCCC--CCCHHHHHHHHhc--CCCCEEEecCCChHhHHHhhc--CCEEEEeceEee
Q psy9039 179 AKAASFFLSDGLII-----TGNATGD--PADVSQLMSVKNA--VDLPILIGSGVTSDNVEHYMT--ADALIIGSHFKQ 245 (251)
Q Consensus 179 a~~a~~~~~D~v~V-----TG~~~g~--~~~~~~l~~vr~~--~~~PV~vG~GI~~~~v~~~~~--ADGvIVGS~~~~ 245 (251)
+..|. .|+|++.+ |+++.+. ...++.++++++. .++||++-|||+++|+.++++ |+|+.|||+|..
T Consensus 101 ~~~A~-~GaDyv~~g~vf~t~sk~~~~~~~g~~~l~~~~~~~~~~iPviaiGGI~~~nv~~~~~~Ga~gVav~s~i~~ 177 (210)
T 3ceu_A 101 VKNRK-HFYDYVFMSPIYDSISKVNYYSTYTAEELREAQKAKIIDSKVMALGGINEDNLLEIKDFGFGGAVVLGDLWN 177 (210)
T ss_dssp HHTTG-GGSSEEEECCCC---------CCCCHHHHHHHHHTTCSSTTEEEESSCCTTTHHHHHHTTCSEEEESHHHHT
T ss_pred HHHHh-hCCCEEEECCcCCCCCCCCCCCCCCHHHHHHHHHhcCCCCCEEEECCCCHHHHHHHHHhCCCEEEEhHHhHc
Confidence 56666 89999985 4444442 2357888988887 689999999999999999996 999999999865
|
| >4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio cholerae o1 biovar el tor} PDB: 4ff0_A* 4hlv_A* 4fez_A | Back alignment and structure |
|---|
Probab=98.47 E-value=5.5e-07 Score=82.82 Aligned_cols=143 Identities=15% Similarity=0.223 Sum_probs=86.7
Q ss_pred HHHHHHHHHHhCCCCccEEEEEeeCC-hHHHHHHHHHcCccceecccccccccCCCceeecCcch-hHHHHHhcCCCcch
Q psy9039 78 MTRLCAEIRKVLPPSVPVGVQILSGC-NKAALATAQAAGLDFIRAESFVFGHMADEGLMNAQAGP-LLRYRKQIGADNVL 155 (251)
Q Consensus 78 ~~~~i~~vr~~~~~~~P~Gvn~~~N~-~~~~~~ia~a~g~~Fir~~~~~~~~~~~~Gli~~da~e-~~~~r~~l~~~~i~ 155 (251)
....++++|+..+ .++++++..++ .......+...|++++..+...+ .. ....+ +.+.++.++ ++.
T Consensus 84 ~~~~i~~vk~~~~--l~vga~vg~~~~~~~~~~~lieaGvd~I~idta~G----~~----~~~~~~I~~ik~~~p--~v~ 151 (366)
T 4fo4_A 84 QAAQVHQVKISGG--LRVGAAVGAAPGNEERVKALVEAGVDVLLIDSSHG----HS----EGVLQRIRETRAAYP--HLE 151 (366)
T ss_dssp HHHHHHHHHTTTS--CCCEEECCSCTTCHHHHHHHHHTTCSEEEEECSCT----TS----HHHHHHHHHHHHHCT--TCE
T ss_pred HHHHHHHHHhcCc--eeEEEEeccChhHHHHHHHHHhCCCCEEEEeCCCC----CC----HHHHHHHHHHHHhcC--CCc
Confidence 3456677776544 57777765553 14556667778888877532111 00 01111 223444442 344
Q ss_pred hhhhhHhhccCCCCCCcccHHHHHHHhhhccccEEEecCCCCCC-----------CCCHHHHHHHHh---cCCCCEEEec
Q psy9039 156 VFTDIKKKHSSHAITADVDITETAKAASFFLSDGLIITGNATGD-----------PADVSQLMSVKN---AVDLPILIGS 221 (251)
Q Consensus 156 i~a~v~~k~~~~~~~~~~~i~~~a~~a~~~~~D~v~VTG~~~g~-----------~~~~~~l~~vr~---~~~~PV~vG~ 221 (251)
++. .+....+.++.+...|+|++.+ |...|. .+..+.+.++++ ..++||++.|
T Consensus 152 Vi~------------G~v~t~e~A~~a~~aGAD~I~v-G~gpGs~~~tr~~~g~g~p~~~~l~~v~~~~~~~~iPVIA~G 218 (366)
T 4fo4_A 152 IIG------------GNVATAEGARALIEAGVSAVKV-GIGPGSICTTRIVTGVGVPQITAIADAAGVANEYGIPVIADG 218 (366)
T ss_dssp EEE------------EEECSHHHHHHHHHHTCSEEEE-CSSCSTTBCHHHHHCCCCCHHHHHHHHHHHHGGGTCCEEEES
T ss_pred eEe------------eeeCCHHHHHHHHHcCCCEEEE-ecCCCCCCCcccccCcccchHHHHHHHHHHHhhcCCeEEEeC
Confidence 432 1112244566666679999999 322221 233455666654 4689999999
Q ss_pred CC-ChHhHHHhhc--CCEEEEeceEee
Q psy9039 222 GV-TSDNVEHYMT--ADALIIGSHFKQ 245 (251)
Q Consensus 222 GI-~~~~v~~~~~--ADGvIVGS~~~~ 245 (251)
|| +++++.+++. ||+|.+||+|..
T Consensus 219 GI~~~~di~kala~GAd~V~vGs~f~~ 245 (366)
T 4fo4_A 219 GIRFSGDISKAIAAGASCVMVGSMFAG 245 (366)
T ss_dssp CCCSHHHHHHHHHTTCSEEEESTTTTT
T ss_pred CCCCHHHHHHHHHcCCCEEEEChHhhc
Confidence 99 7999999886 999999999864
|
| >1jub_A Dihydroorotate dehydrogenase A; homodimer, alpha-beta barrel, flavoprotein, mutant enzyme, oxidoreductase; HET: FMN; 1.40A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ovd_A* 1jue_A* 1dor_A* 2bsl_A* 2bx7_A* 2dor_A* 1jqv_A* 1jrb_A* 1jrc_A* 1jqx_A* | Back alignment and structure |
|---|
Probab=98.43 E-value=6.3e-07 Score=79.98 Aligned_cols=72 Identities=13% Similarity=0.160 Sum_probs=56.1
Q ss_pred cHHHHHHHhhhccccEEEecCCC---------CC--------------CCC----CHHHHHHHHhcC--CCCEEEecCC-
Q psy9039 174 DITETAKAASFFLSDGLIITGNA---------TG--------------DPA----DVSQLMSVKNAV--DLPILIGSGV- 223 (251)
Q Consensus 174 ~i~~~a~~a~~~~~D~v~VTG~~---------~g--------------~~~----~~~~l~~vr~~~--~~PV~vG~GI- 223 (251)
.+.++++.++..|+|++.+++.- +. ... .++.++++++.+ ++||+..|||
T Consensus 173 ~~~~~a~~~~~~G~d~i~v~~~~~~g~~i~~~~~~~~~~~~~~~gG~sg~~~~~~~~~~i~~v~~~~~~~ipvi~~GGI~ 252 (311)
T 1jub_A 173 HFDIMAEILNQFPLTYVNSVNSIGNGLFIDPEAESVVIKPKDGFGGIGGAYIKPTALANVRAFYTRLKPEIQIIGTGGIE 252 (311)
T ss_dssp HHHHHHHHHTTSCCCEEEECCCEEEEECEETTTTEESCSGGGGEEEEESGGGHHHHHHHHHHHHTTSCTTSEEEEESSCC
T ss_pred HHHHHHHHHHHcCCcEEEecCCCCcCceeccCCCCcccccCCCCCccccccccHHHHHHHHHHHHhcCCCCCEEEECCCC
Confidence 34555666666899999998752 00 011 246788999998 8999999999
Q ss_pred ChHhHHHhhc--CCEEEEeceEee
Q psy9039 224 TSDNVEHYMT--ADALIIGSHFKQ 245 (251)
Q Consensus 224 ~~~~v~~~~~--ADGvIVGS~~~~ 245 (251)
|++++.+++. ||+|.+||+|..
T Consensus 253 ~~~da~~~l~~GAd~V~vg~~~l~ 276 (311)
T 1jub_A 253 TGQDAFEHLLCGATMLQIGTALHK 276 (311)
T ss_dssp SHHHHHHHHHHTCSEEEECHHHHH
T ss_pred CHHHHHHHHHcCCCEEEEchHHHh
Confidence 7999999885 999999999985
|
| >3gr7_A NADPH dehydrogenase; flavin, FMN, beta-alpha-barrel, oxidoreductase, flavoprotein; HET: FMN; 2.30A {Geobacillus kaustophilus} PDB: 3gr8_A* | Back alignment and structure |
|---|
Probab=98.42 E-value=1.3e-06 Score=79.40 Aligned_cols=155 Identities=16% Similarity=0.175 Sum_probs=101.1
Q ss_pred hHHHHHHHHHhhCCCCcCCCCccEEEEeecCC-------CCccccCCC---ch-H-HHHHHHHHHHHHHHhCCCCccEEE
Q psy9039 30 NMTRLCAEIRKVLPPSVPVGVQHGVIVENMHD-------VPYVLEAES---GP-E-ITANMTRLCAEIRKVLPPSVPVGV 97 (251)
Q Consensus 30 ~~~~i~~~a~~~a~~l~~~Gv~D~i~ieN~~~-------~Pf~~p~~~---gp-~-i~aa~~~~i~~vr~~~~~~~P~Gv 97 (251)
.++.+++.-.+.|+.+.++|+ |+|+|-=-.| -|.+..-.| |. + ...-..++++++|+.++ .|+++
T Consensus 138 eI~~ii~~f~~aA~~a~~aGf-DgVEih~a~GyLl~qFlsp~~N~R~D~yGGslenR~r~~~eiv~avr~~v~--~pv~v 214 (340)
T 3gr7_A 138 DIEETVQAFQNGARRAKEAGF-DVIEIHAAHGYLINEFLSPLSNRRQDEYGGSPENRYRFLGEVIDAVREVWD--GPLFV 214 (340)
T ss_dssp HHHHHHHHHHHHHHHHHHHTC-SEEEEEECTTCHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHCC--SCEEE
T ss_pred HHHHHHHHHHHHHHHHHHcCC-CEEEEccccchHHHHcCCCccCcCCCcccCCHHHHHHHHHHHHHHHHHhcC--CceEE
Confidence 467777777788888889999 9999831111 366543223 22 1 12234568899999886 68888
Q ss_pred EEeeCChHHHHHHHHHcCccceecccccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHhhccCCCCCCcccHHH
Q psy9039 98 QILSGCNKAALATAQAAGLDFIRAESFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSSHAITADVDITE 177 (251)
Q Consensus 98 n~~~N~~~~~~~ia~a~g~~Fir~~~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~k~~~~~~~~~~~i~~ 177 (251)
=+-.+ +|.. .|. +.....+
T Consensus 215 Rls~~--------------~~~~-----------~g~------------------------------------~~~~~~~ 233 (340)
T 3gr7_A 215 RISAS--------------DYHP-----------DGL------------------------------------TAKDYVP 233 (340)
T ss_dssp EEESC--------------CCST-----------TSC------------------------------------CGGGHHH
T ss_pred Eeccc--------------cccC-----------CCC------------------------------------CHHHHHH
Confidence 65322 2311 010 0012234
Q ss_pred HHHHhhhccccEEEecCCCC-------CCCCCHHHHHHHHhcCCCCEEEecCC-ChHhHHHhhc---CCEEEEeceEeec
Q psy9039 178 TAKAASFFLSDGLIITGNAT-------GDPADVSQLMSVKNAVDLPILIGSGV-TSDNVEHYMT---ADALIIGSHFKQG 246 (251)
Q Consensus 178 ~a~~a~~~~~D~v~VTG~~~-------g~~~~~~~l~~vr~~~~~PV~vG~GI-~~~~v~~~~~---ADGvIVGS~~~~~ 246 (251)
+++..+..|+|++-++.... +.....+.++++|+.+++||+++||| +++++.+++. ||+|.+|+.|+.|
T Consensus 234 la~~L~~~Gvd~i~vs~g~~~~~~~~~~~~~~~~~~~~ik~~~~iPVi~~GgI~s~e~a~~~L~~G~aD~V~iGR~~lan 313 (340)
T 3gr7_A 234 YAKRMKEQGVDLVDVSSGAIVPARMNVYPGYQVPFAELIRREADIPTGAVGLITSGWQAEEILQNGRADLVFLGRELLRN 313 (340)
T ss_dssp HHHHHHHTTCCEEEEECCCSSCCCCCCCTTTTHHHHHHHHHHTTCCEEEESSCCCHHHHHHHHHTTSCSEEEECHHHHHC
T ss_pred HHHHHHHcCCCEEEEecCCccCCCCCCCccccHHHHHHHHHHcCCcEEeeCCCCCHHHHHHHHHCCCeeEEEecHHHHhC
Confidence 44554556888888763221 11124678889999999999999999 6999999884 9999999999876
Q ss_pred Ce
Q psy9039 247 GR 248 (251)
Q Consensus 247 g~ 248 (251)
-.
T Consensus 314 Pd 315 (340)
T 3gr7_A 314 PY 315 (340)
T ss_dssp TT
T ss_pred ch
Confidence 43
|
| >3cu2_A Ribulose-5-phosphate 3-epimerase; YP_718263.1, ribulose-PHOS epimerase family, structural genomics, joint center for STR genomics, JCSG; 1.91A {Haemophilus somnus} | Back alignment and structure |
|---|
Probab=98.38 E-value=2.6e-07 Score=80.16 Aligned_cols=184 Identities=10% Similarity=0.013 Sum_probs=106.6
Q ss_pred cccccccCCCCCCCcchHHHHHHHHHhhCCCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCc
Q psy9039 14 DVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSV 93 (251)
Q Consensus 14 ~~p~~~~~pG~P~~~~~~~~i~~~a~~~a~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~ 93 (251)
..|++.+ .|+. .-.+++ +.+.++|+ |.+.+-=+ |-.|.....-|| .+++++|+.++ .
T Consensus 16 i~psila--~D~~--~l~~~i--------~~~~~~ga-d~lhvDvm-DG~fvpn~t~G~-------~~v~~lr~~~~--~ 72 (237)
T 3cu2_A 16 LSVGILS--ANWL--QLNEEV--------TTLLENQI-NVLHFDIA-DGQFSSLFTVGA-------IGIKYFPTHCF--K 72 (237)
T ss_dssp EEEEGGG--SCGG--GHHHHH--------HHHHHTTC-CEEEEEEE-BSSSSSCBCBCT-------HHHHTSCTTSE--E
T ss_pred EEEeeee--CCcc--cHHHHH--------HHHHHcCC-CEEEEEEe-cCccccchhhhH-------HHHHHHhhhCC--C
Confidence 5688877 6553 112334 45567899 98765433 334555556676 34566776654 3
Q ss_pred cEEEEEeeCChHHHHHHHHHcCccceecccccccccCCCceeecCcchhHHHHHhc---------CCCcchhhhhhHhhc
Q psy9039 94 PVGVQILSGCNKAALATAQAAGLDFIRAESFVFGHMADEGLMNAQAGPLLRYRKQI---------GADNVLVFTDIKKKH 164 (251)
Q Consensus 94 P~Gvn~~~N~~~~~~~ia~a~g~~Fir~~~~~~~~~~~~Gli~~da~e~~~~r~~l---------~~~~i~i~a~v~~k~ 164 (251)
-+-++.+.+..-...+...|++++-... ++ .....+..+..++. |. ++--.+++.
T Consensus 73 --DvhLMv~~p~~~i~~~~~aGAd~itvH~--ea--------~~~~~~~i~~i~~~~~~~~~~~~g~---~~gv~l~p~- 136 (237)
T 3cu2_A 73 --DVHLMVRNQLEVAKAVVANGANLVTLQL--EQ--------YHDFALTIEWLAKQKTTYANQVYPV---LIGACLCPE- 136 (237)
T ss_dssp --EEEEECSCHHHHHHHHHHTTCSEEEEET--TC--------TTSHHHHHHHHTTCEEEETTEEEEC---EEEEEECTT-
T ss_pred --CeEEEEECHHHHHHHHHHcCCCEEEEec--CC--------cccHHHHHHHHHhcccccccccCCc---eEEEEEeCC-
Confidence 5666656655556777778888855431 10 11223344444443 32 222112211
Q ss_pred cCCCCCCcccHHHHHHHhhhccccEEEecCCCCCCC------CCHHHHHHHHhcC-----CCCEEEecCCChHhHHHhhc
Q psy9039 165 SSHAITADVDITETAKAASFFLSDGLIITGNATGDP------ADVSQLMSVKNAV-----DLPILIGSGVTSDNVEHYMT 233 (251)
Q Consensus 165 ~~~~~~~~~~i~~~a~~a~~~~~D~v~VTG~~~g~~------~~~~~l~~vr~~~-----~~PV~vG~GI~~~~v~~~~~ 233 (251)
|+.+.++.+ ..++|.+.+-+...|.. ..+++++++|+.. ++||.+.|||+++|+.++.+
T Consensus 137 -----Tp~~~l~~~-----l~~~D~vlvMsv~pgfggq~f~~~~l~ki~~lr~~~~~~~~~~~I~vdGGI~~~~~~~~~~ 206 (237)
T 3cu2_A 137 -----TPISELEPY-----LDQIDVIQLLTLDPRNGTKYPSELILDRVIQVEKRLGNRRVEKLINIDGSMTLELAKYFKQ 206 (237)
T ss_dssp -----SCGGGGTTT-----TTTCSEEEEESEETTTTEECCHHHHHHHHHHHHHHHGGGGGGCEEEEESSCCHHHHHHHHH
T ss_pred -----ChHHHHHHH-----hhcCceeeeeeeccCcCCeecChhHHHHHHHHHHHHHhcCCCceEEEECCcCHHHHHHHHH
Confidence 222232221 13688886633333221 1246778888775 58999999999999987763
Q ss_pred ----CCEEEEeceEeec
Q psy9039 234 ----ADALIIGSHFKQG 246 (251)
Q Consensus 234 ----ADGvIVGS~~~~~ 246 (251)
||++++||++.+.
T Consensus 207 ~~aGad~~VvGSaIf~~ 223 (237)
T 3cu2_A 207 GTHQIDWLVSGSALFSG 223 (237)
T ss_dssp SSSCCCCEEECGGGGSS
T ss_pred hCCCCcEEEEeeHHhCC
Confidence 9999999998764
|
| >1z41_A YQJM, probable NADH-dependent flavin oxidoreductase YQJ; FMN, beta-alpha-barrel; HET: FMN; 1.30A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1z42_A* 1z44_A* 1z48_A* | Back alignment and structure |
|---|
Probab=98.37 E-value=3e-06 Score=76.84 Aligned_cols=154 Identities=16% Similarity=0.161 Sum_probs=99.8
Q ss_pred hHHHHHHHHHhhCCCCcCCCCccEEEEeecCC-------CCccccCCC---ch--HHHHHHHHHHHHHHHhCCCCccEEE
Q psy9039 30 NMTRLCAEIRKVLPPSVPVGVQHGVIVENMHD-------VPYVLEAES---GP--EITANMTRLCAEIRKVLPPSVPVGV 97 (251)
Q Consensus 30 ~~~~i~~~a~~~a~~l~~~Gv~D~i~ieN~~~-------~Pf~~p~~~---gp--~i~aa~~~~i~~vr~~~~~~~P~Gv 97 (251)
.++.+++.-.+.|+.+.++|+ |+|+|---.| -|.+....| |. -...-+.++++++|+.++ .|+++
T Consensus 138 eI~~~i~~~~~aA~~a~~aGf-DgVeih~~~gyLl~qFlsp~~n~R~d~yGGslenr~r~~~eiv~avr~~v~--~pv~v 214 (338)
T 1z41_A 138 KVKETVQEFKQAAARAKEAGF-DVIEIHAAHGYLIHEFLSPLSNHRTDEYGGSPENRYRFLREIIDEVKQVWD--GPLFV 214 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHTTC-SEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHCC--SCEEE
T ss_pred HHHHHHHHHHHHHHHHHHcCC-CEEEeccccchHHHHccCCCcCCcCcccCcchhhhHHHHHHHHHHHHHHcC--CcEEE
Confidence 456677777777888889999 9999832222 265432222 22 122334568888998886 68887
Q ss_pred EEeeCChHHHHHHHHHcCccceecccccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHhhccCCCCCCcccHHH
Q psy9039 98 QILSGCNKAALATAQAAGLDFIRAESFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSSHAITADVDITE 177 (251)
Q Consensus 98 n~~~N~~~~~~~ia~a~g~~Fir~~~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~k~~~~~~~~~~~i~~ 177 (251)
=+-.+ +|... | . +.....+
T Consensus 215 ris~~--------------~~~~~-----------g-----------------~-------------------~~~~~~~ 233 (338)
T 1z41_A 215 RVSAS--------------DYTDK-----------G-----------------L-------------------DIADHIG 233 (338)
T ss_dssp EEECC--------------CCSTT-----------S-----------------C-------------------CHHHHHH
T ss_pred EecCc--------------ccCCC-----------C-----------------C-------------------CHHHHHH
Confidence 65332 22110 1 0 0011233
Q ss_pred HHHHhhhccccEEEecCCC---C--CCC--CCHHHHHHHHhcCCCCEEEecCC-ChHhHHHhhc---CCEEEEeceEeec
Q psy9039 178 TAKAASFFLSDGLIITGNA---T--GDP--ADVSQLMSVKNAVDLPILIGSGV-TSDNVEHYMT---ADALIIGSHFKQG 246 (251)
Q Consensus 178 ~a~~a~~~~~D~v~VTG~~---~--g~~--~~~~~l~~vr~~~~~PV~vG~GI-~~~~v~~~~~---ADGvIVGS~~~~~ 246 (251)
+++..+..|+|++-+++.. + ... ...+.++++|+.+++||+++||| +++++.+++. ||+|.+|+.|..|
T Consensus 234 ~a~~l~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~~~~ir~~~~iPVi~~Ggi~s~~~a~~~l~~G~aD~V~iGR~~i~n 313 (338)
T 1z41_A 234 FAKWMKEQGVDLIDCSSGALVHADINVFPGYQVSFAEKIREQADMATGAVGMITDGSMAEEILQNGRADLIFIGRELLRD 313 (338)
T ss_dssp HHHHHHHTTCCEEEEECCCSSCCCCCCCTTTTHHHHHHHHHHHCCEEEECSSCCSHHHHHHHHHTTSCSEEEECHHHHHC
T ss_pred HHHHHHHcCCCEEEEecCccccCCCCCCccchHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHcCCceEEeecHHHHhC
Confidence 4444445688888877642 1 111 24577889999999999999999 7999999984 9999999999876
Q ss_pred C
Q psy9039 247 G 247 (251)
Q Consensus 247 g 247 (251)
-
T Consensus 314 P 314 (338)
T 1z41_A 314 P 314 (338)
T ss_dssp T
T ss_pred c
Confidence 4
|
| >1tqx_A D-ribulose-5-phosphate 3-epimerase, putative; structural genomics, protein structure initiative, PSI; 2.00A {Plasmodium falciparum} SCOP: c.1.2.2 | Back alignment and structure |
|---|
Probab=98.36 E-value=9.6e-07 Score=76.10 Aligned_cols=168 Identities=12% Similarity=0.142 Sum_probs=98.7
Q ss_pred CCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHHHHHHHHcCccceecc
Q psy9039 43 PPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQAAGLDFIRAE 122 (251)
Q Consensus 43 ~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g~~Fir~~ 122 (251)
+.+.++|+ |.+.+-=+ |--|.....-|| .+++++|+.+++ .|+.+-++.+++. .+--..+. ++.+-..
T Consensus 25 ~~~~~~g~-d~iHvDvm-Dg~fvpn~t~G~-------~~v~~lr~~~p~-~~~dvhLmv~dp~-~~i~~~~~-Ad~itvH 92 (227)
T 1tqx_A 25 QRMESLGA-EWIHLDVM-DMHFVPNLSFGP-------PVINNLKKYTKS-IFFDVHLMVEYPE-KYVPLLKT-SNQLTFH 92 (227)
T ss_dssp HHHHHTTC-SEEEEEEE-BSSSSSCBCCCH-------HHHHHHGGGCSS-CEEEEEEESSCGG-GGGGGCTT-SSEEEEE
T ss_pred HHHHHcCC-CEEEEEEE-eCCcCcchhcCH-------HHHHHHHHhCCC-CcEEEEEEEcCHH-HHHHHHHh-CCEEEEe
Confidence 55567899 88765333 334554555665 456778888843 5999999999853 22110001 2333221
Q ss_pred cccccccCCCceeec-CcchhHH---HHHhcCCCcchhhhhhHhhccCCCCCCcccHHHHHHHhhhc-cccEEEecCCCC
Q psy9039 123 SFVFGHMADEGLMNA-QAGPLLR---YRKQIGADNVLVFTDIKKKHSSHAITADVDITETAKAASFF-LSDGLIITGNAT 197 (251)
Q Consensus 123 ~~~~~~~~~~Gli~~-da~e~~~---~r~~l~~~~i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~~~-~~D~v~VTG~~~ 197 (251)
. + -.. ...+..+ ..++.|. +.--.+++. |+-+.++.+. .. .+|.+.+-....
T Consensus 93 ~--e--------a~~~~~~~~i~~~~~i~~~G~---k~gvalnp~------tp~~~~~~~l----~~g~~D~VlvmsV~p 149 (227)
T 1tqx_A 93 F--E--------ALNEDTERCIQLAKEIRDNNL---WCGISIKPK------TDVQKLVPIL----DTNLINTVLVMTVEP 149 (227)
T ss_dssp G--G--------GGTTCHHHHHHHHHHHHTTTC---EEEEEECTT------SCGGGGHHHH----TTTCCSEEEEESSCT
T ss_pred e--c--------CCccCHHHHHHHHHHHHHcCC---eEEEEeCCC------CcHHHHHHHh----hcCCcCEEEEeeecc
Confidence 0 0 011 2334455 4455554 221112211 2323333321 12 488885544333
Q ss_pred CC------CCCHHHHHHHHhcC-CCCEEEecCCChHhHHHhhc--CCEEEEeceEee
Q psy9039 198 GD------PADVSQLMSVKNAV-DLPILIGSGVTSDNVEHYMT--ADALIIGSHFKQ 245 (251)
Q Consensus 198 g~------~~~~~~l~~vr~~~-~~PV~vG~GI~~~~v~~~~~--ADGvIVGS~~~~ 245 (251)
|. +..+++++++|+.. ++++.+-|||+++|+.++.+ ||.+++||++-+
T Consensus 150 Gf~gq~f~~~~l~ki~~lr~~~~~~~I~VdGGI~~~ti~~~~~aGAd~~V~GsaIf~ 206 (227)
T 1tqx_A 150 GFGGQSFMHDMMGKVSFLRKKYKNLNIQVDGGLNIETTEISASHGANIIVAGTSIFN 206 (227)
T ss_dssp TCSSCCCCGGGHHHHHHHHHHCTTCEEEEESSCCHHHHHHHHHHTCCEEEESHHHHT
T ss_pred CCCCcccchHHHHHHHHHHHhccCCeEEEECCCCHHHHHHHHHcCCCEEEEeHHHhC
Confidence 22 23468888888877 79999999999999999986 999999999865
|
| >3o07_A Pyridoxine biosynthesis protein SNZ1; (beta/alpha)8-barrel, pyridoxal 5-phosphate synthase, PLP G3 SNO1, biosynthetic protein; HET: 1GP; 1.80A {Saccharomyces cerevisiae} PDB: 3o06_A 3o05_A* 3fem_A | Back alignment and structure |
|---|
Probab=98.36 E-value=9.1e-08 Score=84.38 Aligned_cols=172 Identities=20% Similarity=0.241 Sum_probs=101.0
Q ss_pred CCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHHHHHHHHcCccceecc
Q psy9039 43 PPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQAAGLDFIRAE 122 (251)
Q Consensus 43 ~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g~~Fir~~ 122 (251)
+..+++|+ .+|++ .-+.|-...- .|-+..-+--..|+++|+.++ +|+---.-... ....-+..+.|++++ ++
T Consensus 25 ~iae~aGa-~av~~--l~~~p~d~r~-~gGv~Rm~dp~~I~~I~~aVs--IPVm~k~righ-~~EAqilea~GaD~I-De 96 (291)
T 3o07_A 25 KIAEKSGA-CAVMA--LESIPADMRK-SGKVCRMSDPKMIKDIMNSVS--IPVMAKVRIGH-FVEAQIIEALEVDYI-DE 96 (291)
T ss_dssp HHHHHHTC-SEEEE--CSSCHHHHHT-TTCCCCCCCHHHHHHHHTTCS--SCEEEEEETTC-HHHHHHHHHTTCSEE-EE
T ss_pred HHHHHhCc-hhhhh--ccCCCchhhh-cCCccccCCHHHHHHHHHhCC--CCeEEEEecCc-HHHHHHHHHcCCCEE-ec
Confidence 55788899 99986 3344443221 121111111346788999988 89655554433 333444456888988 33
Q ss_pred cccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHh-hccCCCCCCcccHHHHHHHhhhccccEEEecCC------
Q psy9039 123 SFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKK-KHSSHAITADVDITETAKAASFFLSDGLIITGN------ 195 (251)
Q Consensus 123 ~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~-k~~~~~~~~~~~i~~~a~~a~~~~~D~v~VTG~------ 195 (251)
+.+ ++. .| .+.-+ .. +.+.|+.-.-.++.+ |..+...|+|.+.+||.
T Consensus 97 sev---ltp-----ad--------------~~~~I---~k~~f~vpfv~~~~~l~E-Alrri~eGA~mIrTtge~gtg~v 150 (291)
T 3o07_A 97 SEV---LTP-----AD--------------WTHHI---EKDKFKVPFVCGAKDLGE-ALRRINEGAAMIRTKGEAGTGDV 150 (291)
T ss_dssp ETT---SCC-----SC--------------SSCCC---CGGGCSSCEEEEESSHHH-HHHHHHHTCSEEEECCCTTSCCT
T ss_pred ccC---CCH-----HH--------------HHHHh---hhhcCCCcEEeeCCCHHH-HHHHHHCCCCEEEecCcCCCccH
Confidence 211 011 11 11111 10 112232111123444 34444469999999976
Q ss_pred -------------------C-C---------CCCCCHHHHHHHHhcCCCCEE--EecCC-ChHhHHHhhc--CCEEEEec
Q psy9039 196 -------------------A-T---------GDPADVSQLMSVKNAVDLPIL--IGSGV-TSDNVEHYMT--ADALIIGS 241 (251)
Q Consensus 196 -------------------~-~---------g~~~~~~~l~~vr~~~~~PV~--vG~GI-~~~~v~~~~~--ADGvIVGS 241 (251)
- + ...+++++++++++..++||+ ..||| |++++.+++. ||||.|||
T Consensus 151 ~~av~h~r~~~~~i~~l~g~~t~~el~~~a~~~~ad~elI~~Ike~~~IPVV~IAnGGI~TpedA~~~le~GaDGVmVGr 230 (291)
T 3o07_A 151 SEAVKHIRRITEEIKACQQLKSEDDIAKVAEEMRVPVSLLKDVLEKGKLPVVNFAAGGVATPADAALLMQLGCDGVFVGS 230 (291)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHTSCHHHHHHHHHHTSCSSCEEBCSSCCSHHHHHHHHHTTCSCEEECG
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHhhhcccccCCCHHHHHHHHHccCCCEEEecCCCCCCHHHHHHHHHhCCCEEEEch
Confidence 1 1 113567899999999999995 48999 8999999996 99999999
Q ss_pred eEeecCe
Q psy9039 242 HFKQGGR 248 (251)
Q Consensus 242 ~~~~~g~ 248 (251)
++.+.++
T Consensus 231 AI~~s~D 237 (291)
T 3o07_A 231 GIFKSSN 237 (291)
T ss_dssp GGGGSSC
T ss_pred HHhCCCC
Confidence 9877543
|
| >2e6f_A Dihydroorotate dehydrogenase; chagas disease, pyrimidine biosynthesis, fumarate reductase, energy metabolism, redox homeostasis, flavoprotein; HET: FMN OXC; 1.26A {Trypanosoma cruzi} PDB: 2e6a_A* 2e6d_A* 2e68_A* 2djl_A* 2djx_A* 3c3n_A* 2b4g_A* 3c61_A* 3mhu_A* 3mjy_A* | Back alignment and structure |
|---|
Probab=98.35 E-value=3.5e-07 Score=81.74 Aligned_cols=72 Identities=11% Similarity=0.180 Sum_probs=55.8
Q ss_pred cHHHHHHHhhhcc-ccEEEecCCC---------CC---------------C---CCCHHHHHHHHhcC-CCCEEEecCC-
Q psy9039 174 DITETAKAASFFL-SDGLIITGNA---------TG---------------D---PADVSQLMSVKNAV-DLPILIGSGV- 223 (251)
Q Consensus 174 ~i~~~a~~a~~~~-~D~v~VTG~~---------~g---------------~---~~~~~~l~~vr~~~-~~PV~vG~GI- 223 (251)
.+.++++.+...| +|++.+++.. ++ . +..++.++++|+.+ ++||+..|||
T Consensus 175 ~~~~~a~~~~~aG~~d~i~v~~~~~~~~~i~~~~~~~~~~~~~~~gG~sg~~~~p~~~~~i~~v~~~~~~ipvi~~GGI~ 254 (314)
T 2e6f_A 175 HFDTAAAVLNEFPLVKFVTCVNSVGNGLVIDAESESVVIKPKQGFGGLGGKYILPTALANVNAFYRRCPDKLVFGCGGVY 254 (314)
T ss_dssp HHHHHHHHHHTCTTEEEEEECCCEEEEECEETTTTEESCCGGGGEEEEESGGGHHHHHHHHHHHHHHCTTSEEEEESSCC
T ss_pred HHHHHHHHHHhcCCceEEEEeCCCCccccccCCCCCcccccCcCCCccCcccccHHHHHHHHHHHHhcCCCCEEEECCCC
Confidence 4455566666679 9999988742 01 0 01247788999998 9999999999
Q ss_pred ChHhHHHhhc--CCEEEEeceEee
Q psy9039 224 TSDNVEHYMT--ADALIIGSHFKQ 245 (251)
Q Consensus 224 ~~~~v~~~~~--ADGvIVGS~~~~ 245 (251)
|++++.+++. ||+|.+||+|..
T Consensus 255 ~~~da~~~l~~GAd~V~ig~~~l~ 278 (314)
T 2e6f_A 255 SGEDAFLHILAGASMVQVGTALQE 278 (314)
T ss_dssp SHHHHHHHHHHTCSSEEECHHHHH
T ss_pred CHHHHHHHHHcCCCEEEEchhhHh
Confidence 6999999885 999999999985
|
| >3zwt_A Dihydroorotate dehydrogenase (quinone), mitochond; oxidoreductase; HET: FMN ORO KFZ; 1.55A {Homo sapiens} PDB: 1d3h_A* 2bxv_A* 2prh_A* 2prl_A* 2prm_A* 3f1q_A* 3fj6_A* 3fjl_A* 3g0u_A* 3g0x_A* 3zws_A* 1d3g_A* 3u2o_A* 2fpv_A* 2fpt_A* 2fpy_A* 2fqi_A* 3kvl_A* 3kvk_A* 3kvj_A* ... | Back alignment and structure |
|---|
Probab=98.34 E-value=1.9e-06 Score=79.28 Aligned_cols=76 Identities=17% Similarity=0.217 Sum_probs=59.4
Q ss_pred cccHHHHHHHhhhccccEEEecCCCCCC-----------------CC----CHHHHHHHHhcC--CCCEEEecCC-ChHh
Q psy9039 172 DVDITETAKAASFFLSDGLIITGNATGD-----------------PA----DVSQLMSVKNAV--DLPILIGSGV-TSDN 227 (251)
Q Consensus 172 ~~~i~~~a~~a~~~~~D~v~VTG~~~g~-----------------~~----~~~~l~~vr~~~--~~PV~vG~GI-~~~~ 227 (251)
++.+.++++.++..|+|++++|+...+. ++ .++.+.++++.+ ++||+..||| |+++
T Consensus 233 ~~~~~~ia~~~~~aGadgi~v~ntt~~r~~~~~~~~~~~~gGlSG~~i~p~a~~~v~~i~~~v~~~ipvI~~GGI~s~~d 312 (367)
T 3zwt_A 233 SQDKEDIASVVKELGIDGLIVTNTTVSRPAGLQGALRSETGGLSGKPLRDLSTQTIREMYALTQGRVPIIGVGGVSSGQD 312 (367)
T ss_dssp HHHHHHHHHHHHHHTCCEEEECCCBSCCCTTCCCTTTTSSSEEEEGGGHHHHHHHHHHHHHHTTTCSCEEEESSCCSHHH
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCcccccccccccccccCCcCCcccchhHHHHHHHHHHHcCCCceEEEECCCCCHHH
Confidence 3456677777777899999998753221 01 136788999998 8999999999 7999
Q ss_pred HHHhhc--CCEEEEeceEeecC
Q psy9039 228 VEHYMT--ADALIIGSHFKQGG 247 (251)
Q Consensus 228 v~~~~~--ADGvIVGS~~~~~g 247 (251)
+.+++. ||+|.|||++..+|
T Consensus 313 a~~~l~~GAd~V~vgra~l~~g 334 (367)
T 3zwt_A 313 ALEKIRAGASLVQLYTALTFWG 334 (367)
T ss_dssp HHHHHHHTCSEEEESHHHHHHC
T ss_pred HHHHHHcCCCEEEECHHHHhcC
Confidence 999886 99999999986544
|
| >3hgj_A Chromate reductase; TIM barrel, oxidoreductase; HET: FMN; 2.00A {Thermus scotoductus} SCOP: c.1.4.0 PDB: 3hf3_A* | Back alignment and structure |
|---|
Probab=98.29 E-value=3.2e-06 Score=77.05 Aligned_cols=158 Identities=17% Similarity=0.169 Sum_probs=99.6
Q ss_pred hHHHHHHHHHhhCCCCcCCCCccEEEEeecCC-------CCccccCCC---chH--HHHHHHHHHHHHHHhCCCCccEEE
Q psy9039 30 NMTRLCAEIRKVLPPSVPVGVQHGVIVENMHD-------VPYVLEAES---GPE--ITANMTRLCAEIRKVLPPSVPVGV 97 (251)
Q Consensus 30 ~~~~i~~~a~~~a~~l~~~Gv~D~i~ieN~~~-------~Pf~~p~~~---gp~--i~aa~~~~i~~vr~~~~~~~P~Gv 97 (251)
.++.+++.-.+.|+.+.++|+ |+|+|-=-.| -|.+....| |.. ...-..++++++|+.+++..|+++
T Consensus 146 eI~~ii~~f~~aA~~a~~aGf-DgVEih~a~GyLl~qFlsp~~N~R~D~yGGslenR~r~~~eiv~aVR~avG~d~pV~v 224 (349)
T 3hgj_A 146 GMERILQAFVEGARRALRAGF-QVIELHMAHGYLLSSFLSPLSNQRTDAYGGSLENRMRFPLQVAQAVREVVPRELPLFV 224 (349)
T ss_dssp HHHHHHHHHHHHHHHHHHTTC-CEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHSCTTSCEEE
T ss_pred HHHHHHHHHHHHHHHHHHcCC-CEEEECCccchHHHHhcCCcccccCCCCCcCHHHHHHHHHHHHHHHHHHhcCCceEEE
Confidence 467777887888888889999 9999832111 155433222 211 122234678888888753357777
Q ss_pred EEeeCChHHHHHHHHHcCccceecccccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHhhccCCCCCCcccHHH
Q psy9039 98 QILSGCNKAALATAQAAGLDFIRAESFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSSHAITADVDITE 177 (251)
Q Consensus 98 n~~~N~~~~~~~ia~a~g~~Fir~~~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~k~~~~~~~~~~~i~~ 177 (251)
=+-.+ +|.. .| + +.....+
T Consensus 225 Rls~~--------------~~~~-----------~g-~-----------------------------------~~~~~~~ 243 (349)
T 3hgj_A 225 RVSAT--------------DWGE-----------GG-W-----------------------------------SLEDTLA 243 (349)
T ss_dssp EEESC--------------CCST-----------TS-C-----------------------------------CHHHHHH
T ss_pred Eeccc--------------cccC-----------CC-C-----------------------------------CHHHHHH
Confidence 54221 2211 01 0 0011223
Q ss_pred HHHHhhhccccEEEec-CCCCC-------CCCCHHHHHHHHhcCCCCEEEecCC-ChHhHHHhhc---CCEEEEeceEee
Q psy9039 178 TAKAASFFLSDGLIIT-GNATG-------DPADVSQLMSVKNAVDLPILIGSGV-TSDNVEHYMT---ADALIIGSHFKQ 245 (251)
Q Consensus 178 ~a~~a~~~~~D~v~VT-G~~~g-------~~~~~~~l~~vr~~~~~PV~vG~GI-~~~~v~~~~~---ADGvIVGS~~~~ 245 (251)
+++..+..|+|++-++ |.... .....+.++++|+.+++||+++||| +++++.+++. ||.|.+|+.|+.
T Consensus 244 la~~L~~~Gvd~i~vs~g~~~~~~~~~~~~~~~~~~~~~ir~~~~iPVi~~Ggi~t~e~a~~~l~~G~aD~V~iGR~~la 323 (349)
T 3hgj_A 244 FARRLKELGVDLLDCSSGGVVLRVRIPLAPGFQVPFADAVRKRVGLRTGAVGLITTPEQAETLLQAGSADLVLLGRVLLR 323 (349)
T ss_dssp HHHHHHHTTCCEEEEECCCSCSSSCCCCCTTTTHHHHHHHHHHHCCEEEECSSCCCHHHHHHHHHTTSCSEEEESTHHHH
T ss_pred HHHHHHHcCCCEEEEecCCcCcccccCCCccccHHHHHHHHHHcCceEEEECCCCCHHHHHHHHHCCCceEEEecHHHHh
Confidence 3444444688888887 32111 1124677889999999999999999 7999999884 999999999987
Q ss_pred cCee
Q psy9039 246 GGRT 249 (251)
Q Consensus 246 ~g~~ 249 (251)
|-+|
T Consensus 324 nPdl 327 (349)
T 3hgj_A 324 DPYF 327 (349)
T ss_dssp CTTH
T ss_pred CchH
Confidence 7543
|
| >3i65_A Dihydroorotate dehydrogenase homolog, mitochondrial; triazolopyrimidine,inhibitor, DSM1, FAD, flavoprotein, membrane, mitochondrion; HET: JZ8 FMN ORO LDA; 2.00A {Plasmodium falciparum 3D7} PDB: 3i68_A* 3i6r_A* 3o8a_A* 3sfk_A* | Back alignment and structure |
|---|
Probab=98.29 E-value=1.9e-06 Score=80.33 Aligned_cols=77 Identities=19% Similarity=0.233 Sum_probs=60.9
Q ss_pred cccHHHHHHHhhhccccEEEecCCCC------------CC---CC----CHHHHHHHHhcC--CCCEEEecCC-ChHhHH
Q psy9039 172 DVDITETAKAASFFLSDGLIITGNAT------------GD---PA----DVSQLMSVKNAV--DLPILIGSGV-TSDNVE 229 (251)
Q Consensus 172 ~~~i~~~a~~a~~~~~D~v~VTG~~~------------g~---~~----~~~~l~~vr~~~--~~PV~vG~GI-~~~~v~ 229 (251)
+..+.++|+.++..|+|++++|+... |. ++ .++.+.++++.+ ++||+..||| |++++.
T Consensus 282 ~~~i~~iA~~a~~aGaDgIiv~Ntt~~r~dl~~~~~~~GGlSG~a~~p~al~~I~~v~~~v~~~iPIIg~GGI~s~eDa~ 361 (415)
T 3i65_A 282 QEQKKEIADVLLETNIDGMIISNTTTQINDIKSFENKKGGVSGAKLKDISTKFICEMYNYTNKQIPIIASGGIFSGLDAL 361 (415)
T ss_dssp HHHHHHHHHHHHHHTCSEEEECCCBSCCCCCGGGTTCCSEEEEGGGHHHHHHHHHHHHHHTTTCSCEEECSSCCSHHHHH
T ss_pred HHHHHHHHHHHHHcCCcEEEEeCCCcccccccccccccCCcCCccchHHHHHHHHHHHHHhCCCCCEEEECCCCCHHHHH
Confidence 34577788888888999999998532 11 11 136788999988 7999999999 799999
Q ss_pred Hhhc--CCEEEEeceEeecCe
Q psy9039 230 HYMT--ADALIIGSHFKQGGR 248 (251)
Q Consensus 230 ~~~~--ADGvIVGS~~~~~g~ 248 (251)
+++. ||+|.|||+|..+|-
T Consensus 362 e~l~aGAd~VqIgra~l~~GP 382 (415)
T 3i65_A 362 EKIEAGASVCQLYSCLVFNGM 382 (415)
T ss_dssp HHHHHTEEEEEESHHHHHHGG
T ss_pred HHHHcCCCEEEEcHHHHhcCH
Confidence 9886 999999999987653
|
| >4gj1_A 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) methylideneamino] imidazole-4-carboxamide...; HISA, csgid, niaid,; 2.15A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=98.27 E-value=1e-06 Score=76.56 Aligned_cols=183 Identities=14% Similarity=0.128 Sum_probs=111.1
Q ss_pred CCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHHHHHHHHcCccceecc
Q psy9039 43 PPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQAAGLDFIRAE 122 (251)
Q Consensus 43 ~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g~~Fir~~ 122 (251)
+.+.+.|+ |-+.+-+..+.-...+ ....+++++.+... .|+-+-.=... .+...-....|++-+-.+
T Consensus 38 ~~~~~~ga-d~lhvvDld~a~~~~~---------~~~~~i~~i~~~~~--~pl~vGGGIrs-~e~~~~~l~~GadkVii~ 104 (243)
T 4gj1_A 38 KEYEKAGA-KELHLVDLTGAKDPSK---------RQFALIEKLAKEVS--VNLQVGGGIRS-KEEVKALLDCGVKRVVIG 104 (243)
T ss_dssp HHHHHHTC-CEEEEEEHHHHHCGGG---------CCHHHHHHHHHHCC--SEEEEESSCCC-HHHHHHHHHTTCSEEEEC
T ss_pred HHHHHCCC-CEEEEEecCcccccch---------hHHHHHHHHHHhcC--CCeEecccccc-HHHHHHHHHcCCCEEEEc
Confidence 45788899 9988754432211111 13457778888777 78777654444 444554455666665543
Q ss_pred cccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHh-------hccCCCCCCcccHHHHHHHhhhccccEEEecCC
Q psy9039 123 SFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKK-------KHSSHAITADVDITETAKAASFFLSDGLIITGN 195 (251)
Q Consensus 123 ~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~-------k~~~~~~~~~~~i~~~a~~a~~~~~D~v~VTG~ 195 (251)
.. ...+...+.+..+++|...+-+--|+.. .++.. ..++.++.+.++.....|+.-+++|--
T Consensus 105 t~----------a~~~p~li~e~~~~~g~q~iv~~iD~~~~~~~~v~~~gw~-~~~~~~~~~~~~~~~~~g~~eil~t~I 173 (243)
T 4gj1_A 105 SM----------AIKDATLCLEILKEFGSEAIVLALDTILKEDYVVAVNAWQ-EASDKKLMEVLDFYSNKGLKHILCTDI 173 (243)
T ss_dssp TT----------TTTCHHHHHHHHHHHCTTTEEEEEEEEESSSEEEC---------CCBHHHHHHHHHTTTCCEEEEEET
T ss_pred cc----------cccCCchHHHHHhcccCceEEEEEEEEeCCCCEEEecCce-ecccchHHHHHHHHhhcCCcEEEeeee
Confidence 11 1123334456667777543322212210 11111 123455666666666678999999864
Q ss_pred CC-C--CCCCHHHHHHHHhcC-CCCEEEecCC-ChHhHHHhhc-CCEEEEeceEeecCeec
Q psy9039 196 AT-G--DPADVSQLMSVKNAV-DLPILIGSGV-TSDNVEHYMT-ADALIIGSHFKQGGRTF 250 (251)
Q Consensus 196 ~~-g--~~~~~~~l~~vr~~~-~~PV~vG~GI-~~~~v~~~~~-ADGvIVGS~~~~~g~~~ 250 (251)
.. | ...+.++++++++.+ ++||+++||+ +.+++.++.. ++|+++||+| ++|++.
T Consensus 174 d~DGt~~G~d~~l~~~l~~~~~~ipviasGGv~~~~Dl~~l~~~~~gvivg~Al-~~g~i~ 233 (243)
T 4gj1_A 174 SKDGTMQGVNVRLYKLIHEIFPNICIQASGGVASLKDLENLKGICSGVIVGKAL-LDGVFS 233 (243)
T ss_dssp TC-----CCCHHHHHHHHHHCTTSEEEEESCCCSHHHHHHTTTTCSEEEECHHH-HTTSSC
T ss_pred cccccccCCCHHHHHHHHHhcCCCCEEEEcCCCCHHHHHHHHccCchhehHHHH-HCCCCC
Confidence 32 2 245789999999876 7999999999 6899999877 9999999998 556553
|
| >1nsj_A PRAI, phosphoribosyl anthranilate isomerase; thermostability; 2.00A {Thermotoga maritima} SCOP: c.1.2.4 PDB: 1lbm_A 1dl3_A | Back alignment and structure |
|---|
Probab=98.21 E-value=5.5e-07 Score=76.49 Aligned_cols=164 Identities=16% Similarity=0.181 Sum_probs=92.2
Q ss_pred CCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCCh-HHHHHHHHHcCccceec
Q psy9039 43 PPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCN-KAALATAQAAGLDFIRA 121 (251)
Q Consensus 43 ~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~-~~~~~ia~a~g~~Fir~ 121 (251)
+...++|+ |.+-+. ++ |=|.. ...|...+. +.++++.. . .++|| +.|.. ..-..++...+.++++.
T Consensus 16 ~~a~~~Ga-D~iGfi-f~--~~SpR-~V~~~~a~~---i~~~~~~~-~--~~VgV--fvn~~~~~i~~~~~~~~ld~vQL 82 (205)
T 1nsj_A 16 LFSVESGA-DAVGFV-FY--PKSKR-YISPEDARR---ISVELPPF-V--FRVGV--FVNEEPEKILDVASYVQLNAVQL 82 (205)
T ss_dssp HHHHHHTC-SEEEEE-CC--TTCTT-BCCHHHHHH---HHHHSCSS-S--EEEEE--ESSCCHHHHHHHHHHHTCSEEEE
T ss_pred HHHHHcCC-CEEEEE-ec--CCCCC-cCCHHHHHH---HHHhCCCC-C--CEEEE--EeCCCHHHHHHHHHhhCCCEEEE
Confidence 66778999 999664 21 32322 244544333 33333211 1 24555 66754 34467777788899997
Q ss_pred ccccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHhhccCCCCCCcccHHHHHHHhhhccccEEEecCC-----C
Q psy9039 122 ESFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSSHAITADVDITETAKAASFFLSDGLIITGN-----A 196 (251)
Q Consensus 122 ~~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~~~~~D~v~VTG~-----~ 196 (251)
+ | + - +.+.+.++|. + ++++..+..+ .. ..+ ..+..|.+|++.+-.. .
T Consensus 83 H---G----~---e--~~~~~~~l~~--~---~~vika~~v~-------~~---~~l-~~~~~~~~d~~LlD~~~~~~GG 134 (205)
T 1nsj_A 83 H---G----E---E--PIELCRKIAE--R---ILVIKAVGVS-------NE---RDM-ERALNYREFPILLDTKTPEYGG 134 (205)
T ss_dssp C---S----C---C--CHHHHHHHHT--T---SEEEEEEEES-------SH---HHH-HHHGGGTTSCEEEEESCSSSSS
T ss_pred C---C----C---C--CHHHHHHHhc--C---CCEEEEEEcC-------CH---HHH-HHHHHcCCCEEEECCCCCCCCC
Confidence 4 2 1 1 1122222221 2 3343222211 11 112 2222233777766332 3
Q ss_pred CCCCCCHHHHHHHHhcCCCCEEEecCCChHhHHHhhc---CCEEEEeceEee-cCe
Q psy9039 197 TGDPADVSQLMSVKNAVDLPILIGSGVTSDNVEHYMT---ADALIIGSHFKQ-GGR 248 (251)
Q Consensus 197 ~g~~~~~~~l~~vr~~~~~PV~vG~GI~~~~v~~~~~---ADGvIVGS~~~~-~g~ 248 (251)
+|..-+++.++.++ ..+.|++++||+||+|+++++. ++|+-|.|.+.. +|.
T Consensus 135 tG~~fdw~~l~~~~-~~~~p~~LAGGL~peNV~~ai~~~~p~gVDvsSGvE~~pG~ 189 (205)
T 1nsj_A 135 SGKTFDWSLILPYR-DRFRYLVLSGGLNPENVRSAIDVVRPFAVDVSSGVEAFPGK 189 (205)
T ss_dssp CCSCCCGGGTGGGG-GGSSCEEEESSCCTTTHHHHHHHHCCSEEEESGGGEEETTE
T ss_pred CCCccCHHHHHhhh-cCCCcEEEECCCCHHHHHHHHHhcCCCEEEECCceecCCCC
Confidence 45555777765542 3478999999999999988763 999999999986 675
|
| >1v5x_A PRA isomerase, phosphoribosylanthranilate isomerase; alpha-beta barrel, TRPF, riken structural genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.1.2.4 | Back alignment and structure |
|---|
Probab=98.17 E-value=1e-06 Score=74.69 Aligned_cols=163 Identities=15% Similarity=0.200 Sum_probs=93.9
Q ss_pred CCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCCh-HHHHHHHHHcCccceec
Q psy9039 43 PPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCN-KAALATAQAAGLDFIRA 121 (251)
Q Consensus 43 ~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~-~~~~~ia~a~g~~Fir~ 121 (251)
++..++|+ |.+-+. ++ |=|.. ...|...+. +.++++.. ..++|| +.|.. ..-..++...+.++++.
T Consensus 15 ~~a~~~Ga-D~iGfi-f~--~~SpR-~V~~~~a~~---i~~~~~~~---~~~VgV--fvn~~~~~i~~~~~~~~ld~vQL 81 (203)
T 1v5x_A 15 LLAEALGA-FALGFV-LA--PGSRR-RIAPEAARA---IGEALGPF---VVRVGV--FRDQPPEEVLRLMEEARLQVAQL 81 (203)
T ss_dssp HHHHHHTC-SEEEEE-CC--TTCTT-BCCHHHHHH---HHHHSCSS---SEEEEE--ESSCCHHHHHHHHHHTTCSEEEE
T ss_pred HHHHHcCC-CEEEEE-ec--CCCCC-cCCHHHHHH---HHHhCCCC---CCEEEE--EeCCCHHHHHHHHHhhCCCEEEE
Confidence 66778999 999664 21 32322 244544333 33333211 125555 66754 34477777888999997
Q ss_pred ccccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHhhccCCCCCCcccHHHHHHHhhhccccEEEecC--CCCCC
Q psy9039 122 ESFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSSHAITADVDITETAKAASFFLSDGLIITG--NATGD 199 (251)
Q Consensus 122 ~~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~~~~~D~v~VTG--~~~g~ 199 (251)
+ | + |-..+.+.+.. .++++..+..++ ...+ .+..|.+|++.+-. ..+|.
T Consensus 82 H---G----~---------e~~~~~~~l~~-~~~vika~~v~~-------~~~l-----~~~~~~~d~~LlD~~~gGtG~ 132 (203)
T 1v5x_A 82 H---G----E---------EPPEWAEAVGR-FYPVIKAFPLEG-------PARP-----EWADYPAQALLLDGKRPGSGE 132 (203)
T ss_dssp C---S----C---------CCHHHHHHHTT-TSCEEEEEECSS-------SCCG-----GGGGSSCSEEEEECSSTTSCC
T ss_pred C---C----C---------CCHHHHHHhcc-CCCEEEEEEcCC-------hHhh-----hhhhcCCCEEEEcCCCCCCCC
Confidence 4 2 1 11122233321 244543333221 1122 12223378887743 24566
Q ss_pred CCCHHHHHHHHhcCCCCEEEecCCChHhHHHhhc--CCEEEEeceEee-cCe
Q psy9039 200 PADVSQLMSVKNAVDLPILIGSGVTSDNVEHYMT--ADALIIGSHFKQ-GGR 248 (251)
Q Consensus 200 ~~~~~~l~~vr~~~~~PV~vG~GI~~~~v~~~~~--ADGvIVGS~~~~-~g~ 248 (251)
.-+++.++.+. ..+.|++++||+||+|+++++. ++|+-|.|.+.. +|.
T Consensus 133 ~fdW~~l~~~~-~~~~p~~LAGGL~peNV~~ai~~~p~gVDvsSGvE~~pG~ 183 (203)
T 1v5x_A 133 AYPRAWAKPLL-ATGRRVILAGGIAPENLEEVLALRPYALDLASGVEEAPGV 183 (203)
T ss_dssp CCCGGGGHHHH-HTTSCEEECSSCCSTTHHHHHHHCCSEEEESGGGEEETTE
T ss_pred ccCHHHHHhhh-ccCCcEEEECCCCHHHHHHHHhcCCCEEEeCCceecCCCC
Confidence 66777776622 2468999999999999977655 999999999986 675
|
| >2htm_A Thiazole biosynthesis protein THIG; thiamin biosynthesis, THIG, thermus thermophilus HB8, structural genomics, NPPSFA; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.16 E-value=1.8e-06 Score=75.67 Aligned_cols=116 Identities=14% Similarity=0.235 Sum_probs=78.5
Q ss_pred cCccceecccccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHhhccCCCCCCcccHHHHHHHhhhccccEEEec
Q psy9039 114 AGLDFIRAESFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSSHAITADVDITETAKAASFFLSDGLIIT 193 (251)
Q Consensus 114 ~g~~Fir~~~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~~~~~D~v~VT 193 (251)
.|-+|++... .+++-...+|..+.++..+.+-.++..++ |.++++. ..++..+..|++++..-
T Consensus 90 ~gt~~iKlEv-----i~d~~~l~pD~~~tv~aa~~L~k~Gf~Vl---------py~~~D~---~~ak~l~~~G~~aVmPl 152 (268)
T 2htm_A 90 TGERWVKLEV-----IPDPTYLLPDPLETLKAAERLIEEDFLVL---------PYMGPDL---VLAKRLAALGTATVMPL 152 (268)
T ss_dssp HCCSEEBCCC-----CSCTTTTCCCHHHHHHHHHHHHHTTCEEC---------CEECSCH---HHHHHHHHHTCSCBEEB
T ss_pred cCcceeeeee-----ccCccccCcCHHHHHHHHHHHHHCCCEEe---------eccCCCH---HHHHHHHhcCCCEEEec
Confidence 4456766532 33445567888888888888733333443 2112222 44555555688988774
Q ss_pred CCC--CCCC-CCHHHHHHHHh-cCC-CCEEEecCC-ChHhHHHhhc--CCEEEEeceEeec
Q psy9039 194 GNA--TGDP-ADVSQLMSVKN-AVD-LPILIGSGV-TSDNVEHYMT--ADALIIGSHFKQG 246 (251)
Q Consensus 194 G~~--~g~~-~~~~~l~~vr~-~~~-~PV~vG~GI-~~~~v~~~~~--ADGvIVGS~~~~~ 246 (251)
|+- +|.. .+.+.++++++ ..+ +||++++|| ||++++.+++ ||||.|||+|.+.
T Consensus 153 g~pIGsG~Gi~~~~~L~~i~~~~~~~vPVI~~GGI~tpsDAa~AmeLGAdgVlVgSAI~~a 213 (268)
T 2htm_A 153 AAPIGSGWGVRTRALLELFAREKASLPPVVVDAGLGLPSHAAEVMELGLDAVLVNTAIAEA 213 (268)
T ss_dssp SSSTTTCCCSTTHHHHHHHHHTTTTSSCBEEESCCCSHHHHHHHHHTTCCEEEESHHHHTS
T ss_pred CccCcCCcccCCHHHHHHHHHhcCCCCeEEEeCCCCCHHHHHHHHHcCCCEEEEChHHhCC
Confidence 432 2222 24778999998 678 999999999 7999999997 9999999998753
|
| >2h6r_A Triosephosphate isomerase; beta-alpha barrel; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=98.14 E-value=1.3e-06 Score=74.75 Aligned_cols=60 Identities=22% Similarity=0.421 Sum_probs=36.0
Q ss_pred ccEEEecCC--CCCCCCCH-HHHHHHHhcC-CCCEEEecCCC-hHhHHHhhc--CCEEEEeceEeecC
Q psy9039 187 SDGLIITGN--ATGDPADV-SQLMSVKNAV-DLPILIGSGVT-SDNVEHYMT--ADALIIGSHFKQGG 247 (251)
Q Consensus 187 ~D~v~VTG~--~~g~~~~~-~~l~~vr~~~-~~PV~vG~GI~-~~~v~~~~~--ADGvIVGS~~~~~g 247 (251)
.++++ ||. ++-.+... ..++.+|+.. ++||++||||+ +++++.+.. +||++|||++.+-.
T Consensus 140 ~~~iG-tG~~~~t~~~~~~~~~~~~ir~~~~~~~ii~ggGI~~~~~~~~~~~~gaDgvlVGsAi~~~~ 206 (219)
T 2h6r_A 140 PELIG-TGIPVSKANPEVVEGTVRAVKEINKDVKVLCGAGISKGEDVKAALDLGAEGVLLASGVVKAK 206 (219)
T ss_dssp CC---------------CSHHHHHHHHHHCTTCEEEECSSCCSHHHHHHHHTTTCCCEEESHHHHTCS
T ss_pred ccccc-cCCCCccCCHHHHHHHHHHHHhccCCCeEEEEeCcCcHHHHHHHhhCCCCEEEEcHHHhCcc
Confidence 34545 663 22222223 4455566665 79999999996 677777765 99999999998754
|
| >1tv5_A Dhodehase, dihydroorotate dehydrogenase homolog, mitochondri, dihydroorotate; alpha-beta barrel, TIM barrel, oxidoreductase; HET: A26 FMN ORO N8E; 2.40A {Plasmodium falciparum} SCOP: c.1.4.1 | Back alignment and structure |
|---|
Probab=98.13 E-value=8.7e-06 Score=76.59 Aligned_cols=74 Identities=19% Similarity=0.195 Sum_probs=58.2
Q ss_pred cHHHHHHHhhhccccEEEecCCCCCCC-------------------CCHHHHHHHHhcC--CCCEEEecCC-ChHhHHHh
Q psy9039 174 DITETAKAASFFLSDGLIITGNATGDP-------------------ADVSQLMSVKNAV--DLPILIGSGV-TSDNVEHY 231 (251)
Q Consensus 174 ~i~~~a~~a~~~~~D~v~VTG~~~g~~-------------------~~~~~l~~vr~~~--~~PV~vG~GI-~~~~v~~~ 231 (251)
.+.++|+.++..|+|++++|+...... ..++.++++++.+ ++||+..||| |++++.+.
T Consensus 312 d~~~iA~~~~~aGaDgI~v~ntt~~~~d~~~~~~~~GGlSG~~~~~~sl~~i~~v~~~v~~~iPVIg~GGI~s~~DA~e~ 391 (443)
T 1tv5_A 312 QKKEIADVLLETNIDGMIISNTTTQINDIKSFENKKGGVSGAKLKDISTKFICEMYNYTNKQIPIIASGGIFSGLDALEK 391 (443)
T ss_dssp HHHHHHHHHHHTTCSEEEECCCBSCCCCCGGGTTCCSEEEEHHHHHHHHHHHHHHHHHTTTCSCEEEESSCCSHHHHHHH
T ss_pred HHHHHHHHHHHcCCCEEEEECCCcccccccccccccCCcCCCcchHHHHHHHHHHHHHcCCCCcEEEECCCCCHHHHHHH
Confidence 466677777778999999998632110 0246788999988 8999999999 79999998
Q ss_pred hc--CCEEEEeceEeecC
Q psy9039 232 MT--ADALIIGSHFKQGG 247 (251)
Q Consensus 232 ~~--ADGvIVGS~~~~~g 247 (251)
+. ||+|.+||+|..+|
T Consensus 392 l~aGAd~Vqigrall~~g 409 (443)
T 1tv5_A 392 IEAGASVCQLYSCLVFNG 409 (443)
T ss_dssp HHTTEEEEEESHHHHHHG
T ss_pred HHcCCCEEEEcHHHHhcC
Confidence 85 99999999987533
|
| >3kru_A NADH:flavin oxidoreductase/NADH oxidase; homotetramer, dimer of dimers, TIM barrel, thermophilic, OLD enzyme; HET: FMN; 1.60A {Thermoanaerobacter pseudethanolicus AT} SCOP: c.1.4.0 PDB: 3krz_A* | Back alignment and structure |
|---|
Probab=98.07 E-value=7.7e-06 Score=74.50 Aligned_cols=157 Identities=14% Similarity=0.155 Sum_probs=98.8
Q ss_pred hHHHHHHHHHhhCCCCcCCCCccEEEEe-------ecCCCCccccCCCch----H-HHHHHHHHHHHHHHhCCCCccEEE
Q psy9039 30 NMTRLCAEIRKVLPPSVPVGVQHGVIVE-------NMHDVPYVLEAESGP----E-ITANMTRLCAEIRKVLPPSVPVGV 97 (251)
Q Consensus 30 ~~~~i~~~a~~~a~~l~~~Gv~D~i~ie-------N~~~~Pf~~p~~~gp----~-i~aa~~~~i~~vr~~~~~~~P~Gv 97 (251)
.++.+++.-.+.|+.+.++|+ |+|+|- |.|.-|.+..-.|.+ + ...-..++++++|+.++...|+++
T Consensus 137 eI~~ii~~f~~AA~~a~~aGf-DgVEih~ahGYLl~qFlsp~~N~R~D~yGGslenR~rf~~eiv~aVr~avg~d~pv~v 215 (343)
T 3kru_A 137 EIKSIVKAFGEAAKRANLAGY-DVVEIHAAHGYLIHEFLSPLSNKRKDEYGNSIENRARFLIEVIDEVRKNWPENKPIFV 215 (343)
T ss_dssp HHHHHHHHHHHHHHHHHHHTC-SEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHTHHHHHHHHHHHHTSCTTSCEEE
T ss_pred HHHHHHHHHHHHHhhccccCC-ceEEEecccchhHHHhhcccccccchhhccchHhHHHHHHHHHHHHHhcCCccCCeEE
Confidence 467777777777888889999 999984 224466654333321 1 122335688889988753357777
Q ss_pred EEeeCChHHHHHHHHHcCccceecccccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHhhccCCCCCCcccHHH
Q psy9039 98 QILSGCNKAALATAQAAGLDFIRAESFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSSHAITADVDITE 177 (251)
Q Consensus 98 n~~~N~~~~~~~ia~a~g~~Fir~~~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~k~~~~~~~~~~~i~~ 177 (251)
=+-.+ +|.. .|. + .....+
T Consensus 216 Rls~~--------------~~~~-----------~g~---~---------------------------------~~~~~~ 234 (343)
T 3kru_A 216 RVSAD--------------DYME-----------GGI---N---------------------------------IDMMVE 234 (343)
T ss_dssp EEECC--------------CSST-----------TSC---C---------------------------------HHHHHH
T ss_pred Eeech--------------hhhc-----------cCc---c---------------------------------HHHHHH
Confidence 54321 2311 010 0 011223
Q ss_pred HHHHhhhccccEEEec-CCCCC------CCCCHHHHHHHHhcCCCCEEEecCC-ChHhHHHhhc---CCEEEEeceEeec
Q psy9039 178 TAKAASFFLSDGLIIT-GNATG------DPADVSQLMSVKNAVDLPILIGSGV-TSDNVEHYMT---ADALIIGSHFKQG 246 (251)
Q Consensus 178 ~a~~a~~~~~D~v~VT-G~~~g------~~~~~~~l~~vr~~~~~PV~vG~GI-~~~~v~~~~~---ADGvIVGS~~~~~ 246 (251)
+++..+.. +|++-++ |.... .....+.++++|+.+++||++.||| +++++.+++. ||+|.+|..|..|
T Consensus 235 ~a~~l~~~-vd~i~vs~g~~~~~~~~~~~~~~~~~~~~ir~~~~iPVi~~Ggi~t~e~Ae~~l~~G~aD~V~iGR~~lan 313 (343)
T 3kru_A 235 YINMIKDK-VDLIDVSSGGLLNVDINLYPGYQVKYAETIKKRCNIKTSAVGLITTQELAEEILSNERADLVALGRELLRN 313 (343)
T ss_dssp HHHHHTTT-CSEEEEECCCSSCCCCCCCTTTTHHHHHHHHHHHTCEEEEESSCCCHHHHHHHHHTTSCSEEEESHHHHHC
T ss_pred HHHHhhcc-ccEEeccCCceEeeeecccCceeehHHHHHHHhcCcccceeeeeeHHHHHHHHHhchhhHHHHHHHHHhcC
Confidence 34444444 7777764 32111 1124677889999999999999999 6999999884 9999999998876
Q ss_pred Cee
Q psy9039 247 GRT 249 (251)
Q Consensus 247 g~~ 249 (251)
-.|
T Consensus 314 Pdl 316 (343)
T 3kru_A 314 PYW 316 (343)
T ss_dssp TTH
T ss_pred CeE
Confidence 443
|
| >1f76_A Dihydroorotate dehydrogenase; monomer, alpha-beta-barrel, FMN binding domain, orotate complex, oxidoreductase; HET: MSE FMN ORO; 2.50A {Bacteria} SCOP: c.1.4.1 | Back alignment and structure |
|---|
Probab=98.07 E-value=1.1e-05 Score=72.81 Aligned_cols=72 Identities=18% Similarity=0.200 Sum_probs=55.8
Q ss_pred cHHHHHHHhhhccccEEEecCCCCCC---------------C------CCHHHHHHHHhcC--CCCEEEecCC-ChHhHH
Q psy9039 174 DITETAKAASFFLSDGLIITGNATGD---------------P------ADVSQLMSVKNAV--DLPILIGSGV-TSDNVE 229 (251)
Q Consensus 174 ~i~~~a~~a~~~~~D~v~VTG~~~g~---------------~------~~~~~l~~vr~~~--~~PV~vG~GI-~~~~v~ 229 (251)
.+.++++.+...|+|++.||+...+. . ..++.++++|+.+ ++||+..||| |++++.
T Consensus 226 ~~~~~a~~l~~~Gvd~i~vsn~~~~~~~~~~~~~~~~~gg~~g~~~~~~~~~~i~~i~~~~~~~ipVi~~GGI~~~~da~ 305 (336)
T 1f76_A 226 ELIQVADSLVRHNIDGVIATNTTLDRSLVQGMKNCDQTGGLSGRPLQLKSTEIIRRLSLELNGRLPIIGVGGIDSVIAAR 305 (336)
T ss_dssp HHHHHHHHHHHTTCSEEEECCCBCCCTTSTTSTTTTCSSEEEEGGGHHHHHHHHHHHHHHHTTSSCEEEESSCCSHHHHH
T ss_pred HHHHHHHHHHHcCCcEEEEeCCcccccccccccccccCCCcCCchhHHHHHHHHHHHHHHhCCCCCEEEECCCCCHHHHH
Confidence 34556677767899999998752110 0 0136688899888 8999999999 799999
Q ss_pred Hhhc--CCEEEEeceEee
Q psy9039 230 HYMT--ADALIIGSHFKQ 245 (251)
Q Consensus 230 ~~~~--ADGvIVGS~~~~ 245 (251)
+++. ||+|.+||+|+.
T Consensus 306 ~~l~~GAd~V~igr~~l~ 323 (336)
T 1f76_A 306 EKIAAGASLVQIYSGFIF 323 (336)
T ss_dssp HHHHHTCSEEEESHHHHH
T ss_pred HHHHCCCCEEEeeHHHHh
Confidence 9996 999999999875
|
| >3l5l_A Xenobiotic reductase A; TIM barrel, oxidoreductase; HET: BU3 FMN; 1.03A {Pseudomonas putida} SCOP: c.1.4.0 PDB: 3l5m_A* 3n19_B* 3n16_A* 3l68_A* 3l67_A* 3l65_A* 3l66_A* 3n14_A* 2h8z_A* 2h90_A* 2h8x_A* | Back alignment and structure |
|---|
Probab=98.04 E-value=8.1e-06 Score=74.76 Aligned_cols=158 Identities=15% Similarity=0.098 Sum_probs=98.8
Q ss_pred hHHHHHHHHHhhCCCCcCCCCccEEEEeecCC-------CCccccCCC---chH--HHHHHHHHHHHHHHhCCCCccEEE
Q psy9039 30 NMTRLCAEIRKVLPPSVPVGVQHGVIVENMHD-------VPYVLEAES---GPE--ITANMTRLCAEIRKVLPPSVPVGV 97 (251)
Q Consensus 30 ~~~~i~~~a~~~a~~l~~~Gv~D~i~ieN~~~-------~Pf~~p~~~---gp~--i~aa~~~~i~~vr~~~~~~~P~Gv 97 (251)
.++.+++.-.+.|+...++|+ |+|+|-=-.| -|.+..-.| |.. ...-..++++++|+.++...|+++
T Consensus 152 eI~~ii~~f~~aA~~a~~aGf-DgVEih~a~GyLl~qFlsp~~N~R~D~yGGslenR~r~~~eiv~aVr~avg~d~pV~v 230 (363)
T 3l5l_A 152 DIARVKQDFVDAARRARDAGF-EWIELHFAHGYLGQSFFSEHSNKRTDAYGGSFDNRSRFLLETLAAVREVWPENLPLTA 230 (363)
T ss_dssp HHHHHHHHHHHHHHHHHHHTC-SEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHTTSCTTSCEEE
T ss_pred HHHHHHHHHHHHHHHHHHcCC-CEEEEccccchHHHHccCCCcCCCCcccCcCHHHHHHHHHHHHHHHHHHcCCCceEEE
Confidence 467777888888888889999 9999842111 355432222 211 112244577888887753357776
Q ss_pred EEeeCChHHHHHHHHHcCccceecccccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHhhccCCCCCCcccHHH
Q psy9039 98 QILSGCNKAALATAQAAGLDFIRAESFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSSHAITADVDITE 177 (251)
Q Consensus 98 n~~~N~~~~~~~ia~a~g~~Fir~~~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~k~~~~~~~~~~~i~~ 177 (251)
=+-.+ +|.. .|-+ . .....+
T Consensus 231 Ris~~--------------~~~~-----------~G~~-------------------~----------------~~~~~~ 250 (363)
T 3l5l_A 231 RFGVL--------------EYDG-----------RDEQ-------------------T----------------LEESIE 250 (363)
T ss_dssp EEEEE--------------CSSS-----------CHHH-------------------H----------------HHHHHH
T ss_pred Eecch--------------hcCC-----------CCCC-------------------C----------------HHHHHH
Confidence 54321 2211 0000 0 011223
Q ss_pred HHHHhhhccccEEEecCCCC--------CCCCCHHHHHHHHhcCCCCEEEecCC-ChHhHHHhhc---CCEEEEeceEee
Q psy9039 178 TAKAASFFLSDGLIITGNAT--------GDPADVSQLMSVKNAVDLPILIGSGV-TSDNVEHYMT---ADALIIGSHFKQ 245 (251)
Q Consensus 178 ~a~~a~~~~~D~v~VTG~~~--------g~~~~~~~l~~vr~~~~~PV~vG~GI-~~~~v~~~~~---ADGvIVGS~~~~ 245 (251)
+++..+..|+|++-+++... +.....+.++++|+.+++||+++||| +++++.+++. ||.|.+|+.|+.
T Consensus 251 la~~L~~~Gvd~i~vs~g~~~~~~~~~~~~~~~~~~~~~ir~~~~iPVi~~GgI~s~e~a~~~l~~G~aD~V~iGR~~la 330 (363)
T 3l5l_A 251 LARRFKAGGLDLLSVSVGFTIPDTNIPWGPAFMGPIAERVRREAKLPVTSAWGFGTPQLAEAALQANQLDLVSVGRAHLA 330 (363)
T ss_dssp HHHHHHHTTCCEEEEEECCCSSCCCCCCCTTTTHHHHHHHHHHHTCCEEECSSTTSHHHHHHHHHTTSCSEEECCHHHHH
T ss_pred HHHHHHHcCCCEEEEecCccccccccCCCcchhHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHCCCccEEEecHHHHh
Confidence 34444446888888875321 11124577889999999999999999 6999999884 999999999887
Q ss_pred cCe
Q psy9039 246 GGR 248 (251)
Q Consensus 246 ~g~ 248 (251)
|-.
T Consensus 331 nPd 333 (363)
T 3l5l_A 331 DPH 333 (363)
T ss_dssp CTT
T ss_pred Cch
Confidence 643
|
| >3nl6_A Thiamine biosynthetic bifunctional enzyme; thiamin biosynthesis, eukaryoyes, transferase; HET: TPS ACP; 2.61A {Candida glabrata} PDB: 3nl2_A* 3nl5_A* 3nl3_A* 3nm3_A* 3nm1_A* | Back alignment and structure |
|---|
Probab=98.03 E-value=2.5e-05 Score=75.21 Aligned_cols=156 Identities=19% Similarity=0.126 Sum_probs=89.7
Q ss_pred CCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHHHHHHHHcCccceecc
Q psy9039 43 PPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQAAGLDFIRAE 122 (251)
Q Consensus 43 ~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g~~Fir~~ 122 (251)
+.+.++|+ +.|.+ ..+-. +.... ....+.++++-+... +|+.+ |+. ..+|.+.|++.++..
T Consensus 32 e~al~~Gv-~~vQl----R~K~~----~~~~~-~~~a~~l~~l~~~~~--v~liI----ND~---~dlA~~~gAdGVHLg 92 (540)
T 3nl6_A 32 EAGLQNGV-TLVQI----REKDA----DTKFF-IEEALQIKELCHAHN--VPLII----NDR---IDVAMAIGADGIHVG 92 (540)
T ss_dssp HHHHHTTC-SEEEE----CCSSS----CTTHH-HHHHHHHHHHHHHTT--CCEEE----CSC---SHHHHHTTCSEEEEC
T ss_pred HHHHHCCC-CEEEE----ecCCC----CHHHH-HHHHHHHHHHHHhcC--CEEEE----eCc---HHHHHHcCCCEEEEC
Confidence 33457899 99974 22211 11111 223333344444455 56555 452 567777888877742
Q ss_pred cccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHhhccCCCCCCcccHHHHHHHhhhcc---ccEEEe-----cC
Q psy9039 123 SFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSSHAITADVDITETAKAASFFL---SDGLII-----TG 194 (251)
Q Consensus 123 ~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~~~~---~D~v~V-----TG 194 (251)
.+. ......|+.++... ++. .|.+ +.++ ++.|...| +|++++ |.
T Consensus 93 --------q~d------l~~~~ar~~lg~~~--iiG-----~S~h------t~ee-a~~A~~~G~~~aDYv~~Gpvf~T~ 144 (540)
T 3nl6_A 93 --------QDD------MPIPMIRKLVGPDM--VIG-----WSVG------FPEE-VDELSKMGPDMVDYIGVGTLFPTL 144 (540)
T ss_dssp --------TTS------SCHHHHHHHHCTTS--EEE-----EEEC------SHHH-HHHHHHTCC--CCEEEESCCSCCC
T ss_pred --------hhh------cCHHHHHHHhCCCC--EEE-----EECC------CHHH-HHHHHHcCCCCCCEEEEcCCCCCC
Confidence 221 12344566665422 111 0112 3333 45565557 999988 32
Q ss_pred CCCCCC---CCHHHHHHHHhc------CCCCEEEecCCChHhHHHhh---------c-CCEEEEeceEee
Q psy9039 195 NATGDP---ADVSQLMSVKNA------VDLPILIGSGVTSDNVEHYM---------T-ADALIIGSHFKQ 245 (251)
Q Consensus 195 ~~~g~~---~~~~~l~~vr~~------~~~PV~vG~GI~~~~v~~~~---------~-ADGvIVGS~~~~ 245 (251)
++.+.. ..++.++++++. .++|+++-|||+++|+.+++ . |||+.|+|+|..
T Consensus 145 tK~~~~~~~~G~~~l~~i~~~~~~~~~~~iPvvAIGGI~~~ni~~v~~~~~~~g~~~GadgvAVvsaI~~ 214 (540)
T 3nl6_A 145 TKKNPKKAPMGTAGAIRVLDALERNNAHWCRTVGIGGLHPDNIERVLYQCVSSNGKRSLDGICVVSDIIA 214 (540)
T ss_dssp CCC----CCCHHHHHHHHHHHHHHTTCTTCEEEEESSCCTTTHHHHHHHCBCTTSSCBCSCEEESHHHHT
T ss_pred CCCCcCCCCCCHHHHHHHHHHHHhhccCCCCEEEEcCCCHHHHHHHHHhhcccccccCceEEEEeHHHhc
Confidence 333321 125667766654 48999999999999999887 4 999999999875
|
| >3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum} | Back alignment and structure |
|---|
Probab=98.01 E-value=8.1e-06 Score=75.86 Aligned_cols=71 Identities=20% Similarity=0.345 Sum_probs=52.3
Q ss_pred cHHHHHHHhhhccccEEEecCCCCC----------C-CCCHHHHHHHHhc---CCCCEEEecCC-ChHhHHHhhc--CCE
Q psy9039 174 DITETAKAASFFLSDGLIITGNATG----------D-PADVSQLMSVKNA---VDLPILIGSGV-TSDNVEHYMT--ADA 236 (251)
Q Consensus 174 ~i~~~a~~a~~~~~D~v~VTG~~~g----------~-~~~~~~l~~vr~~---~~~PV~vG~GI-~~~~v~~~~~--ADG 236 (251)
...+.++.+...|+|++++ |...| . .+....+.++++. .++||++.||| +++++.+++. ||+
T Consensus 193 ~t~e~A~~a~~aGAD~I~v-G~g~Gs~~~tr~~~g~g~p~~~al~~v~~~~~~~~IPVIA~GGI~~~~di~kalalGAd~ 271 (400)
T 3ffs_A 193 VTEEATKELIENGADGIKV-GIGPGSICTTRIVAGVGVPQITAIEKCSSVASKFGIPIIADGGIRYSGDIGKALAVGASS 271 (400)
T ss_dssp CSHHHHHHHHHTTCSEEEE-CC---------CCSCBCCCHHHHHHHHHHHHTTTTCCEEEESCCCSHHHHHHHHTTTCSE
T ss_pred CCHHHHHHHHHcCCCEEEE-eCCCCcCcccccccccchhHHHHHHHHHHHHHhcCCCEEecCCCCCHHHHHHHHHcCCCE
Confidence 3355667777789999999 42111 1 2345667776654 57999999999 7999999996 999
Q ss_pred EEEeceEee
Q psy9039 237 LIIGSHFKQ 245 (251)
Q Consensus 237 vIVGS~~~~ 245 (251)
|.+||+|..
T Consensus 272 V~vGt~f~~ 280 (400)
T 3ffs_A 272 VMIGSILAG 280 (400)
T ss_dssp EEECGGGTT
T ss_pred EEEChHHhc
Confidence 999999865
|
| >3b0p_A TRNA-dihydrouridine synthase; TIM barrel, oxidoreductase; HET: FMN; 1.70A {Thermus thermophilus} PDB: 3b0u_X* 3b0v_C* | Back alignment and structure |
|---|
Probab=98.00 E-value=7.1e-06 Score=74.81 Aligned_cols=73 Identities=10% Similarity=0.207 Sum_probs=59.1
Q ss_pred HHHHHHHhhhccccEEEecCCCCC-----C------CCCHHHHHHHHhcC-CCCEEEecCC-ChHhHHHhhc-CCEEEEe
Q psy9039 175 ITETAKAASFFLSDGLIITGNATG-----D------PADVSQLMSVKNAV-DLPILIGSGV-TSDNVEHYMT-ADALIIG 240 (251)
Q Consensus 175 i~~~a~~a~~~~~D~v~VTG~~~g-----~------~~~~~~l~~vr~~~-~~PV~vG~GI-~~~~v~~~~~-ADGvIVG 240 (251)
..++++.++..|+|++.|+|.... . +.+.+.++++|+.+ ++||+++||| |++++.+++. ||+|.+|
T Consensus 146 ~~~~a~~l~~aG~d~I~V~~r~~~~g~~g~~~~~~~~~~~~~i~~ik~~~~~iPVianGgI~s~eda~~~l~GaD~V~iG 225 (350)
T 3b0p_A 146 LAQSVEAMAEAGVKVFVVHARSALLALSTKANREIPPLRHDWVHRLKGDFPQLTFVTNGGIRSLEEALFHLKRVDGVMLG 225 (350)
T ss_dssp HHHHHHHHHHTTCCEEEEECSCBC----------CCCCCHHHHHHHHHHCTTSEEEEESSCCSHHHHHHHHTTSSEEEEC
T ss_pred HHHHHHHHHHcCCCEEEEecCchhcccCcccccCCCcccHHHHHHHHHhCCCCeEEEECCcCCHHHHHHHHhCCCEEEEC
Confidence 455566666689999999985421 1 12578899999998 9999999999 7999999998 9999999
Q ss_pred ceEeecC
Q psy9039 241 SHFKQGG 247 (251)
Q Consensus 241 S~~~~~g 247 (251)
+++..|-
T Consensus 226 Ra~l~~P 232 (350)
T 3b0p_A 226 RAVYEDP 232 (350)
T ss_dssp HHHHHCG
T ss_pred HHHHhCc
Confidence 9987664
|
| >3l5a_A NADH/flavin oxidoreductase/NADH oxidase; OLD yellow enzyme family, OYE-like FMN-binding domain, TIM B oxidoreductase; HET: PGE; 1.65A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=98.00 E-value=2.1e-05 Score=73.48 Aligned_cols=70 Identities=16% Similarity=0.127 Sum_probs=51.1
Q ss_pred HHHhhh-ccccEEEecCCCC----------CCCCCHHHHHHHHhcC--CCCEEEecCC-ChHhHHHhhc-CCEEEEeceE
Q psy9039 179 AKAASF-FLSDGLIITGNAT----------GDPADVSQLMSVKNAV--DLPILIGSGV-TSDNVEHYMT-ADALIIGSHF 243 (251)
Q Consensus 179 a~~a~~-~~~D~v~VTG~~~----------g~~~~~~~l~~vr~~~--~~PV~vG~GI-~~~~v~~~~~-ADGvIVGS~~ 243 (251)
++..+. .|+|++-|++... +.......++++|+.+ ++||++.||| +++++.++++ ||.|.+|..|
T Consensus 270 a~~L~~~~Gvd~I~vs~g~~~~~~~~~~~~g~~~~~~~a~~Ik~~v~~~iPVI~~GgI~t~e~Ae~~L~~aDlVaiGR~~ 349 (419)
T 3l5a_A 270 IDWVMDVSNIQYLAIASWGRHIYQNTSRTPGDHFGRPVNQIVYEHLAGRIPLIASGGINSPESALDALQHADMVGMSSPF 349 (419)
T ss_dssp HHHHHHHSCCCCEEECCTTCCGGGCBCCCSSTTTTSBHHHHHHHHHTTSSCEEECSSCCSHHHHHHHGGGCSEEEESTHH
T ss_pred HHHHHhhcCCcEEEEeeCCccccccccCCCCccccHHHHHHHHHHcCCCCeEEEECCCCCHHHHHHHHHhCCcHHHHHHH
Confidence 343344 5777777776431 1111235677888887 6999999999 7999999998 9999999999
Q ss_pred eecCe
Q psy9039 244 KQGGR 248 (251)
Q Consensus 244 ~~~g~ 248 (251)
+.|-.
T Consensus 350 IanPd 354 (419)
T 3l5a_A 350 VTEPD 354 (419)
T ss_dssp HHCTT
T ss_pred HHCcH
Confidence 87643
|
| >3tdn_A FLR symmetric alpha-beta TIM barrel; symmetric superfold, de novo protein; 1.40A {Synthetic construct} PDB: 3og3_A 3tdm_A | Back alignment and structure |
|---|
Probab=98.00 E-value=6.2e-06 Score=71.06 Aligned_cols=75 Identities=13% Similarity=0.139 Sum_probs=60.5
Q ss_pred ccHHHHHHHhhhccccEEEecCCCC---CCCCCHHHHHHHHhcCCCCEEEecCC-ChHhHHHhhc--CCEEEEeceEeec
Q psy9039 173 VDITETAKAASFFLSDGLIITGNAT---GDPADVSQLMSVKNAVDLPILIGSGV-TSDNVEHYMT--ADALIIGSHFKQG 246 (251)
Q Consensus 173 ~~i~~~a~~a~~~~~D~v~VTG~~~---g~~~~~~~l~~vr~~~~~PV~vG~GI-~~~~v~~~~~--ADGvIVGS~~~~~ 246 (251)
....+.++.....|+|.+.++.... +...+.+.++++++.+++||+++||| +++++.+++. ||++++||.+..+
T Consensus 35 ~~~~~~a~~~~~~G~~~i~v~d~~~~~~~~~~~~~~i~~i~~~~~ipvi~~Ggi~~~~~~~~~l~~Gad~V~ig~~~l~d 114 (247)
T 3tdn_A 35 ILLRDWVVEVEKRGAGEILLTSIDRDGTKSGYDTEMIRFVRPLTTLPIIASGGAGKMEHFLEAFLRGADKVSINTAAVEN 114 (247)
T ss_dssp EEHHHHHHHHHHTTCSEEEEEETTTTTCSSCCCHHHHHHHGGGCCSCEEEESCCCSHHHHHHHHHTTCSEECCSHHHHHC
T ss_pred CCHHHHHHHHHHcCCCEEEEEecCcccCCCcccHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCCeeehhhHHhhC
Confidence 4566777777778999998876432 23446789999999999999999999 6899999986 9999999987765
Q ss_pred C
Q psy9039 247 G 247 (251)
Q Consensus 247 g 247 (251)
-
T Consensus 115 p 115 (247)
T 3tdn_A 115 P 115 (247)
T ss_dssp T
T ss_pred h
Confidence 3
|
| >1vyr_A Pentaerythritol tetranitrate reductase; oxidoreductase, flavoenzyme, explosive degradation, steroid binding; HET: FMN TNF; 0.9A {Enterobacter cloacae} SCOP: c.1.4.1 PDB: 1gvq_A* 1gvr_A* 1gvs_A* 1h50_A* 1h51_A* 1h60_A* 1h61_A* 1h62_A* 1h63_A* 1gvo_A* 2aba_A* 3f03_K* 3kft_A* 3p7y_A* 3p80_A* 3p81_A* 3p62_A* 3p8i_A* 2abb_A* 3p67_A* ... | Back alignment and structure |
|---|
Probab=97.96 E-value=9.3e-05 Score=67.78 Aligned_cols=71 Identities=14% Similarity=0.108 Sum_probs=54.9
Q ss_pred HHHHHhhhccccEEEecCCC--CCCCCCHHHHHHHHhcCCCCEEEecCCChHhHHHhhc---CCEEEEeceEeecC
Q psy9039 177 ETAKAASFFLSDGLIITGNA--TGDPADVSQLMSVKNAVDLPILIGSGVTSDNVEHYMT---ADALIIGSHFKQGG 247 (251)
Q Consensus 177 ~~a~~a~~~~~D~v~VTG~~--~g~~~~~~~l~~vr~~~~~PV~vG~GI~~~~v~~~~~---ADGvIVGS~~~~~g 247 (251)
++++..+.+|+|++-+++.. .......+.++++|+.+++||+++|||+++++.+++. ||+|.+|+.|..|-
T Consensus 255 ~~a~~l~~~G~d~i~v~~~~~~~~~~~~~~~~~~v~~~~~iPvi~~Ggit~~~a~~~l~~g~aD~V~~gR~~l~~P 330 (364)
T 1vyr_A 255 YLIEELAKRGIAYLHMSETDLAGGKPYSEAFRQKVRERFHGVIIGAGAYTAEKAEDLIGKGLIDAVAFGRDYIANP 330 (364)
T ss_dssp HHHHHHHHTTCSEEEEECCBTTBCCCCCHHHHHHHHHHCCSEEEEESSCCHHHHHHHHHTTSCSEEEESHHHHHCT
T ss_pred HHHHHHHHhCCCEEEEecCcccCCCcccHHHHHHHHHHCCCCEEEECCcCHHHHHHHHHCCCccEEEECHHHHhCh
Confidence 34555555689999887631 1112246778899999999999999999999999984 99999999987763
|
| >1i4n_A Indole-3-glycerol phosphate synthase; thermostable TIM-barrel protein, salt bridges, electrostatic interactions, lyase; 2.50A {Thermotoga maritima} SCOP: c.1.2.4 PDB: 1j5t_A | Back alignment and structure |
|---|
Probab=97.95 E-value=2.1e-05 Score=68.71 Aligned_cols=141 Identities=12% Similarity=0.125 Sum_probs=95.1
Q ss_pred HHHHHHHHhCCCCccEEEEEeeCChHHHHHHHHHcCccceecccccccccCCCceeecCcchhHHHHHhcCCCcchhhhh
Q psy9039 80 RLCAEIRKVLPPSVPVGVQILSGCNKAALATAQAAGLDFIRAESFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTD 159 (251)
Q Consensus 80 ~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g~~Fir~~~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~ 159 (251)
.-++++|+.++ +|+---=|.-+ .++...+.+.|++.+-... +.+.. .+..++.++.+++|. ..+.+
T Consensus 91 ~dL~~ir~~v~--lPvLrKDfi~~-~~qi~ea~~~GAD~ilLi~---a~l~~-----~~l~~l~~~a~~lGl---~~lvE 156 (251)
T 1i4n_A 91 AFVRAARNLTC--RPILAKDFYID-TVQVKLASSVGADAILIIA---RILTA-----EQIKEIYEAAEELGM---DSLVE 156 (251)
T ss_dssp HHHHHHHTTCC--SCEEEECCCCS-THHHHHHHHTTCSEEEEEG---GGSCH-----HHHHHHHHHHHTTTC---EEEEE
T ss_pred HHHHHHHHhCC--CCEEEeeCCCC-HHHHHHHHHcCCCEEEEec---ccCCH-----HHHHHHHHHHHHcCC---eEEEE
Confidence 34577888888 79776555545 4566668889998877631 11111 235666777777765 23222
Q ss_pred hHhhccCCCCCCcccHHHHHHHhhhc-cccEEEecCCCC-CCCCCHHHHHHHHhcC--CCCEEEecCC-ChHhHHHhhc-
Q psy9039 160 IKKKHSSHAITADVDITETAKAASFF-LSDGLIITGNAT-GDPADVSQLMSVKNAV--DLPILIGSGV-TSDNVEHYMT- 233 (251)
Q Consensus 160 v~~k~~~~~~~~~~~i~~~a~~a~~~-~~D~v~VTG~~~-g~~~~~~~l~~vr~~~--~~PV~vG~GI-~~~~v~~~~~- 233 (251)
++ + .+.++.|... |+|.++++-..- +...+++...++.+.. +.+++..||| |++++..+..
T Consensus 157 v~------------~-~eE~~~A~~l~g~~iIGinnr~l~t~~~d~~~~~~l~~~ip~~~~vIaEsGI~t~edv~~~~~~ 223 (251)
T 1i4n_A 157 VH------------S-REDLEKVFSVIRPKIIGINTRDLDTFEIKKNVLWELLPLVPDDTVVVAESGIKDPRELKDLRGK 223 (251)
T ss_dssp EC------------S-HHHHHHHHTTCCCSEEEEECBCTTTCCBCTTHHHHHGGGSCTTSEEEEESCCCCGGGHHHHTTT
T ss_pred eC------------C-HHHHHHHHhcCCCCEEEEeCcccccCCCCHHHHHHHHHhCCCCCEEEEeCCCCCHHHHHHHHHh
Confidence 21 2 3335666666 999999987532 2344566666666665 5899999999 6999999998
Q ss_pred CCEEEEeceEeecC
Q psy9039 234 ADALIIGSHFKQGG 247 (251)
Q Consensus 234 ADGvIVGS~~~~~g 247 (251)
+||+.|||+|++..
T Consensus 224 a~avLVG~aimr~~ 237 (251)
T 1i4n_A 224 VNAVLVGTSIMKAE 237 (251)
T ss_dssp CSEEEECHHHHHCS
T ss_pred CCEEEEcHHHcCCc
Confidence 99999999998754
|
| >2r14_A Morphinone reductase; H-tunnelling, flavoprotein, NADH, hydride transfer, oxidoreductase; HET: FMN TXD; 1.40A {Pseudomonas putida} PDB: 3gx9_A* 1gwj_A* | Back alignment and structure |
|---|
Probab=97.93 E-value=1.8e-05 Score=72.90 Aligned_cols=158 Identities=11% Similarity=0.039 Sum_probs=96.4
Q ss_pred hHHHHHHHHHhhCCCCcCCCCccEEEEeecCC-------CCccccCCC---ch--HHHHHHHHHHHHHHHhCCCCccEEE
Q psy9039 30 NMTRLCAEIRKVLPPSVPVGVQHGVIVENMHD-------VPYVLEAES---GP--EITANMTRLCAEIRKVLPPSVPVGV 97 (251)
Q Consensus 30 ~~~~i~~~a~~~a~~l~~~Gv~D~i~ieN~~~-------~Pf~~p~~~---gp--~i~aa~~~~i~~vr~~~~~~~P~Gv 97 (251)
.++.+++.-.+.|+.+.++|+ |+|+|-=-.| -|.+....| |. -...-..++++++|+.++.. |+++
T Consensus 160 eI~~~i~~f~~aA~~a~~aGf-DgVEIh~a~GYLl~QFlsp~~N~R~D~yGGslenR~r~~~eiv~aVr~avg~~-~v~v 237 (377)
T 2r14_A 160 EIPGIVEDYRQAAQRAKRAGF-DMVEVHAANACLPNQFLATGTNRRTDQYGGSIENRARFPLEVVDAVAEVFGPE-RVGI 237 (377)
T ss_dssp GHHHHHHHHHHHHHHHHHHTC-SEEEEEECTTCHHHHHHSTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCGG-GEEE
T ss_pred HHHHHHHHHHHHHHHHHHcCC-CEEEEcCcccchHHhccCCccccCCCccCcchhhchHHHHHHHHHHHHHcCCC-cEEE
Confidence 577777777788877788999 9999721111 255433222 21 11222345778888877633 6666
Q ss_pred EEeeCChHHHHHHHHHcCccceecccccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHhhccCCCCCCcccHHH
Q psy9039 98 QILSGCNKAALATAQAAGLDFIRAESFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSSHAITADVDITE 177 (251)
Q Consensus 98 n~~~N~~~~~~~ia~a~g~~Fir~~~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~k~~~~~~~~~~~i~~ 177 (251)
=+-.+ ++.. +. .+| .+.....+
T Consensus 238 rls~~--------------~~~~-----~~---~~~------------------------------------~~~~~~~~ 259 (377)
T 2r14_A 238 RLTPF--------------LELF-----GL---TDD------------------------------------EPEAMAFY 259 (377)
T ss_dssp EECTT--------------CCCT-----TC---CCS------------------------------------CHHHHHHH
T ss_pred Eeccc--------------cccC-----CC---CCC------------------------------------CCHHHHHH
Confidence 54211 1110 00 000 00011233
Q ss_pred HHHHhhhccccEEEecCCCC-CCC--CCHHHHHHHHhcCCCCEEEecCCChHhHHHhhc---CCEEEEeceEeecC
Q psy9039 178 TAKAASFFLSDGLIITGNAT-GDP--ADVSQLMSVKNAVDLPILIGSGVTSDNVEHYMT---ADALIIGSHFKQGG 247 (251)
Q Consensus 178 ~a~~a~~~~~D~v~VTG~~~-g~~--~~~~~l~~vr~~~~~PV~vG~GI~~~~v~~~~~---ADGvIVGS~~~~~g 247 (251)
+++..+..|+|++-+++... ... ...+.++++|+.+++||++.|||+++++.+++. ||+|.+|+.|..|-
T Consensus 260 la~~le~~Gvd~i~v~~~~~~~~~~~~~~~~~~~ik~~~~iPvi~~Ggi~~~~a~~~l~~g~aD~V~igR~~l~~P 335 (377)
T 2r14_A 260 LAGELDRRGLAYLHFNEPDWIGGDITYPEGFREQMRQRFKGGLIYCGNYDAGRAQARLDDNTADAVAFGRPFIANP 335 (377)
T ss_dssp HHHHHHHTTCSEEEEECCC------CCCTTHHHHHHHHCCSEEEEESSCCHHHHHHHHHTTSCSEEEESHHHHHCT
T ss_pred HHHHHHHcCCCEEEEeCCcccCCCCcchHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHCCCceEEeecHHHHhCc
Confidence 44444556888888876321 111 145678899999999999999999999999984 99999999987764
|
| >4ab4_A Xenobiotic reductase B; oxidoreductase, OLD yellow enzyme; HET: FMN TNL EDO; 1.50A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=97.93 E-value=1.6e-05 Score=72.90 Aligned_cols=69 Identities=17% Similarity=0.104 Sum_probs=53.7
Q ss_pred HHHHHHhhhccccEEEecCCCCCCCCCHHHHHHHHhcCCCCEEEecCCChHhHHHhhc---CCEEEEeceEeecCe
Q psy9039 176 TETAKAASFFLSDGLIITGNATGDPADVSQLMSVKNAVDLPILIGSGVTSDNVEHYMT---ADALIIGSHFKQGGR 248 (251)
Q Consensus 176 ~~~a~~a~~~~~D~v~VTG~~~g~~~~~~~l~~vr~~~~~PV~vG~GI~~~~v~~~~~---ADGvIVGS~~~~~g~ 248 (251)
.++++..+..|+|++-+++...+. +.++++|+.+++||++.||++++++.+++. ||+|.+|..|+.|-.
T Consensus 245 ~~la~~l~~~Gvd~i~v~~~~~~~----~~~~~ik~~~~iPvi~~Ggit~e~a~~~l~~g~aD~V~iGR~~lanPd 316 (362)
T 4ab4_A 245 TYVARELGKRGIAFICSREREADD----SIGPLIKEAFGGPYIVNERFDKASANAALASGKADAVAFGVPFIANPD 316 (362)
T ss_dssp HHHHHHHHHTTCSEEEEECCCCTT----CCHHHHHHHHCSCEEEESSCCHHHHHHHHHTTSCSEEEESHHHHHCTT
T ss_pred HHHHHHHHHhCCCEEEECCCCCCH----HHHHHHHHHCCCCEEEeCCCCHHHHHHHHHcCCccEEEECHHhHhCcH
Confidence 334455555689999888765322 357788888899999999999999999884 999999999877643
|
| >3gka_A N-ethylmaleimide reductase; decode biostructures, ssgcid, niaid, targetdb bupsa00093A, structural genomics; HET: FMN; 2.30A {Burkholderia pseudomallei} SCOP: c.1.4.0 | Back alignment and structure |
|---|
Probab=97.92 E-value=1.5e-05 Score=73.09 Aligned_cols=155 Identities=16% Similarity=0.157 Sum_probs=96.7
Q ss_pred hHHHHHHHHHhhCCCCcCCCCccEEEEeecCC-------CCccccCCCch----H-HHHHHHHHHHHHHHhCCCCccEEE
Q psy9039 30 NMTRLCAEIRKVLPPSVPVGVQHGVIVENMHD-------VPYVLEAESGP----E-ITANMTRLCAEIRKVLPPSVPVGV 97 (251)
Q Consensus 30 ~~~~i~~~a~~~a~~l~~~Gv~D~i~ieN~~~-------~Pf~~p~~~gp----~-i~aa~~~~i~~vr~~~~~~~P~Gv 97 (251)
.++.+++.-.+.|+...++|+ |+|+|-=-.| -|.+....|.+ + ...-+.++++++|+.++.. |+++
T Consensus 155 eI~~ii~~f~~AA~~A~~aGf-DgVEih~a~GYLl~QFLsp~~N~RtD~yGGslenR~rf~~evv~aVr~~vg~~-~v~v 232 (361)
T 3gka_A 155 EIPGVVAAFRRGAENARAAGF-DGVEVHGANGYLLDQFLQDSANRRTDAYGGSIENRARLLLEVVDAAIDVWSAA-RVGV 232 (361)
T ss_dssp GHHHHHHHHHHHHHHHHHTTC-SEEEEECCTTSHHHHHHSTTTCCCCSTTSSSHHHHSHHHHHHHHHHHHHHCGG-GEEE
T ss_pred HHHHHHHHHHHHHHHHHHcCC-CEEEECCcCccHHHhccCcccccccCCCCCChhhcHHHHHHHHHHHHHHcCCC-eEEE
Confidence 578888888888888899999 9999821111 25544322311 1 1122335677777776533 6665
Q ss_pred EEeeCChHHHHHHHHHcCccceecccccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHhhccCCCCCCcccHHH
Q psy9039 98 QILSGCNKAALATAQAAGLDFIRAESFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSSHAITADVDITE 177 (251)
Q Consensus 98 n~~~N~~~~~~~ia~a~g~~Fir~~~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~k~~~~~~~~~~~i~~ 177 (251)
=+-.+ ++.. |.-..+ +.....+
T Consensus 233 Rls~~--------------~~~~------------g~~~~~--------------------------------~~~~~~~ 254 (361)
T 3gka_A 233 HLAPR--------------GDAH------------TMGDSD--------------------------------PAATFGH 254 (361)
T ss_dssp EECTT--------------CCSS------------SCCCSC--------------------------------HHHHHHH
T ss_pred ecccc--------------cccC------------CCCCCC--------------------------------cHHHHHH
Confidence 43111 1100 000000 0012233
Q ss_pred HHHHhhhccccEEEecCCCCCCCCCHHHHHHHHhcCCCCEEEecCCChHhHHHhhc---CCEEEEeceEeecCe
Q psy9039 178 TAKAASFFLSDGLIITGNATGDPADVSQLMSVKNAVDLPILIGSGVTSDNVEHYMT---ADALIIGSHFKQGGR 248 (251)
Q Consensus 178 ~a~~a~~~~~D~v~VTG~~~g~~~~~~~l~~vr~~~~~PV~vG~GI~~~~v~~~~~---ADGvIVGS~~~~~g~ 248 (251)
+++..+..|+|++-+++...+. +.++++|+.+++||++.||++++++.+++. ||+|.+|..|..|-.
T Consensus 255 la~~l~~~Gvd~i~v~~~~~~~----~~~~~ik~~~~iPvi~~Ggit~e~a~~~l~~G~aD~V~iGR~~ladPd 324 (361)
T 3gka_A 255 VARELGRRRIAFLFARESFGGD----AIGQQLKAAFGGPFIVNENFTLDSAQAALDAGQADAVAWGKLFIANPD 324 (361)
T ss_dssp HHHHHHHTTCSEEEEECCCSTT----CCHHHHHHHHCSCEEEESSCCHHHHHHHHHTTSCSEEEESHHHHHCTT
T ss_pred HHHHHHHcCCCEEEECCCCCCH----HHHHHHHHHcCCCEEEeCCCCHHHHHHHHHcCCccEEEECHHhHhCcH
Confidence 4455555689999888765322 357788888899999999999999999884 999999999877643
|
| >3sgz_A Hydroxyacid oxidase 2; flavoprotein, homology, INH oxidoreductase-oxidoreductase inhibitor complex; HET: FMN HO6; 1.35A {Rattus norvegicus} PDB: 1tb3_A* | Back alignment and structure |
|---|
Probab=97.90 E-value=7.1e-05 Score=68.35 Aligned_cols=70 Identities=21% Similarity=0.333 Sum_probs=55.5
Q ss_pred HHHHHHhhhccccEEEecCCC----CCCCCCHHHHHHHHhcC--CCCEEEecCC-ChHhHHHhhc--CCEEEEeceEee
Q psy9039 176 TETAKAASFFLSDGLIITGNA----TGDPADVSQLMSVKNAV--DLPILIGSGV-TSDNVEHYMT--ADALIIGSHFKQ 245 (251)
Q Consensus 176 ~~~a~~a~~~~~D~v~VTG~~----~g~~~~~~~l~~vr~~~--~~PV~vG~GI-~~~~v~~~~~--ADGvIVGS~~~~ 245 (251)
.+.|+.+...|+|+++|+|.. .+.++..+.+.++++.+ ++||++-||| +++++.+++. ||+|.+|+.|..
T Consensus 228 ~e~A~~a~~~GaD~I~vsn~GG~~~d~~~~~~~~L~~i~~av~~~ipVia~GGI~~g~Dv~kaLalGA~aV~iGr~~l~ 306 (352)
T 3sgz_A 228 KEDAELAMKHNVQGIVVSNHGGRQLDEVSASIDALREVVAAVKGKIEVYMDGGVRTGTDVLKALALGARCIFLGRPILW 306 (352)
T ss_dssp HHHHHHHHHTTCSEEEECCGGGTSSCSSCCHHHHHHHHHHHHTTSSEEEEESSCCSHHHHHHHHHTTCSEEEESHHHHH
T ss_pred HHHHHHHHHcCCCEEEEeCCCCCccCCCccHHHHHHHHHHHhCCCCeEEEECCCCCHHHHHHHHHcCCCEEEECHHHHH
Confidence 455677777899999997741 12234568888888776 7999999999 7899888886 999999998863
|
| >4ef8_A Dihydroorotate dehydrogenase; phenyl isothiocyanate, PYRD, oxidoreductase, oxidoreductase-oxidor inhibitor complex; HET: FMN; 1.56A {Leishmania major} PDB: 3gye_A* 3gz3_A* 4ef9_A* 3tro_A* 3tjx_A* | Back alignment and structure |
|---|
Probab=97.88 E-value=1.5e-05 Score=72.97 Aligned_cols=46 Identities=15% Similarity=0.229 Sum_probs=40.4
Q ss_pred HHHHHHHHhcC-CCCEEEecCC-ChHhHHHhhc--CCEEEEeceEeecCe
Q psy9039 203 VSQLMSVKNAV-DLPILIGSGV-TSDNVEHYMT--ADALIIGSHFKQGGR 248 (251)
Q Consensus 203 ~~~l~~vr~~~-~~PV~vG~GI-~~~~v~~~~~--ADGvIVGS~~~~~g~ 248 (251)
++.+.++++.. ++||+..||| |++++.+++. ||+|.|||++..+|-
T Consensus 265 ~~~i~~v~~~~~~ipII~~GGI~s~~da~~~l~aGAd~V~vgra~l~~GP 314 (354)
T 4ef8_A 265 LANINAFYRRCPGKLIFGCGGVYTGEDAFLHVLAGASMVQVGTALQEEGP 314 (354)
T ss_dssp HHHHHHHHHHCTTSEEEEESCCCSHHHHHHHHHHTEEEEEECHHHHHHCT
T ss_pred HHHHHHHHHhCCCCCEEEECCcCCHHHHHHHHHcCCCEEEEhHHHHHhCH
Confidence 56788999886 7999999999 7999998886 999999999988764
|
| >3iwp_A Copper homeostasis protein CUTC homolog; conserved sequence motif, metal-binding site, polymorphism, metal binding protein; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.85 E-value=4.4e-05 Score=67.71 Aligned_cols=161 Identities=12% Similarity=0.170 Sum_probs=88.6
Q ss_pred CCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEe-------eCCh-----HHHHHH
Q psy9039 43 PPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQIL-------SGCN-----KAALAT 110 (251)
Q Consensus 43 ~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~-------~N~~-----~~~~~i 110 (251)
.+.+++|+ |-|++..-+..+=..| + .-.++++|+..+ +|+-+|+= ||+. ......
T Consensus 53 ~~A~~gGA-dRIELc~~l~~GGlTP---S-------~g~i~~a~~~~~--ipV~vMIRPRgGdF~Ys~~E~~~M~~dI~~ 119 (287)
T 3iwp_A 53 VNAERGGA-DRIELCSGLSEGGTTP---S-------MGVLQVVKQSVQ--IPVFVMIRPRGGDFLYSDREIEVMKADIRL 119 (287)
T ss_dssp HHHHHHTC-SEEEECBCGGGTCBCC---C-------HHHHHHHHTTCC--SCEEEECCSSSSCSCCCHHHHHHHHHHHHH
T ss_pred HHHHHhCC-CEEEECCCCCCCCCCC---C-------HHHHHHHHHhcC--CCeEEEEecCCCCcccCHHHHHHHHHHHHH
Confidence 55688999 9999874433322333 2 234556677666 78777752 1110 012444
Q ss_pred HHHcCccceecccccccccCCCceeecC-cchhHHHHHhcCCCcchhhhhhHhhccCCCCCCcccHHHHHHHhhhccccE
Q psy9039 111 AQAAGLDFIRAESFVFGHMADEGLMNAQ-AGPLLRYRKQIGADNVLVFTDIKKKHSSHAITADVDITETAKAASFFLSDG 189 (251)
Q Consensus 111 a~a~g~~Fir~~~~~~~~~~~~Gli~~d-a~e~~~~r~~l~~~~i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~~~~~D~ 189 (251)
+...|++.+-. ..+..+|-+..+ ..++++....++. - | +.. ... .. ...+..+....+|+|.
T Consensus 120 ~~~~GAdGvVf-----G~L~~dg~iD~~~~~~Li~~a~~l~v---T-F---HRA--FD~-~~--d~~~Ale~Li~lGvdr 182 (287)
T 3iwp_A 120 AKLYGADGLVF-----GALTEDGHIDKELCMSLMAICRPLPV---T-F---HRA--FDM-VH--DPMAALETLLTLGFER 182 (287)
T ss_dssp HHHTTCSEEEE-----CCBCTTSCBCHHHHHHHHHHHTTSCE---E-E---CGG--GGG-CS--CHHHHHHHHHHHTCSE
T ss_pred HHHcCCCEEEE-----eeeCCCCCcCHHHHHHHHHHcCCCcE---E-E---ECc--hhc-cC--CHHHHHHHHHHcCCCE
Confidence 55555554442 223344433221 2223332222211 0 0 100 010 11 1222223334469999
Q ss_pred EEecCCCCCCCCCHHHHHHHHhcC--CCCEEEecCCChHhHHHhhc
Q psy9039 190 LIITGNATGDPADVSQLMSVKNAV--DLPILIGSGVTSDNVEHYMT 233 (251)
Q Consensus 190 v~VTG~~~g~~~~~~~l~~vr~~~--~~PV~vG~GI~~~~v~~~~~ 233 (251)
+..||........++.|+++.+.. +++|++||||+++|+.++++
T Consensus 183 ILTSG~~~~a~~Gl~~Lk~Lv~~a~~rI~ImaGGGV~~~Ni~~l~~ 228 (287)
T 3iwp_A 183 VLTSGCDSSALEGLPLIKRLIEQAKGRIVVMPGGGITDRNLQRILE 228 (287)
T ss_dssp EEECTTSSSTTTTHHHHHHHHHHHTTSSEEEECTTCCTTTHHHHHH
T ss_pred EECCCCCCChHHhHHHHHHHHHHhCCCCEEEECCCcCHHHHHHHHH
Confidence 999998766656678888877654 59999999999999998874
|
| >1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 | Back alignment and structure |
|---|
Probab=97.84 E-value=8.6e-05 Score=72.69 Aligned_cols=157 Identities=13% Similarity=0.103 Sum_probs=95.4
Q ss_pred hHHHHHHHHHhhCCCCcCCCCccEEEEeecCCC-------CccccCCC---ch--HHHHHHHHHHHHHHHhCCCCccEEE
Q psy9039 30 NMTRLCAEIRKVLPPSVPVGVQHGVIVENMHDV-------PYVLEAES---GP--EITANMTRLCAEIRKVLPPSVPVGV 97 (251)
Q Consensus 30 ~~~~i~~~a~~~a~~l~~~Gv~D~i~ieN~~~~-------Pf~~p~~~---gp--~i~aa~~~~i~~vr~~~~~~~P~Gv 97 (251)
.++.+++.-.+.|+...++|+ |+|+|---.|. |++....| |. -...-+.++++++|+.+++.+|+++
T Consensus 135 ei~~~i~~~~~aA~~a~~aGf-d~veih~~~gyl~~qFlsp~~n~r~d~yGgs~~~r~r~~~eiv~avr~~vG~~~~v~v 213 (671)
T 1ps9_A 135 EILQLIDNFARCAQLAREAGY-DGVEVMGSEGYLINEFLTLRTNQRSDQWGGDYRNRMRFAVEVVRAVRERVGNDFIIIY 213 (671)
T ss_dssp HHHHHHHHHHHHHHHHHHTTC-SEEEEEECBTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCSSSEEEE
T ss_pred HHHHHHHHHHHHHHHHHHcCC-CEEEEccccchHHHHhCCCccCCCcCcCCCcHHHHHHHHHHHHHHHHHHcCCCceEEE
Confidence 466777777788888889999 99997322222 55433222 11 1223345677888887643356665
Q ss_pred EEeeCChHHHHHHHHHcCccceecccccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHhhccCCCCCCcccHHH
Q psy9039 98 QILSGCNKAALATAQAAGLDFIRAESFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSSHAITADVDITE 177 (251)
Q Consensus 98 n~~~N~~~~~~~ia~a~g~~Fir~~~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~k~~~~~~~~~~~i~~ 177 (251)
=+-.+ +|.. .| . +.....+
T Consensus 214 rls~~--------------~~~~-----------~g-----------------~-------------------~~~~~~~ 232 (671)
T 1ps9_A 214 RLSML--------------DLVE-----------DG-----------------G-------------------TFAETVE 232 (671)
T ss_dssp EEEEE--------------CCST-----------TC-----------------C-------------------CHHHHHH
T ss_pred EECcc--------------ccCC-----------CC-----------------C-------------------CHHHHHH
Confidence 44221 1111 00 0 0011223
Q ss_pred HHHHhhhccccEEEecCCCC-----------CCCCCHHHHHHHHhcCCCCEEEecCC-ChHhHHHhhc---CCEEEEece
Q psy9039 178 TAKAASFFLSDGLIITGNAT-----------GDPADVSQLMSVKNAVDLPILIGSGV-TSDNVEHYMT---ADALIIGSH 242 (251)
Q Consensus 178 ~a~~a~~~~~D~v~VTG~~~-----------g~~~~~~~l~~vr~~~~~PV~vG~GI-~~~~v~~~~~---ADGvIVGS~ 242 (251)
+++..+.+|+|++.+++... +.....+.++++|+.+++||++.||| +++++.+++. ||+|.+|+.
T Consensus 233 ~a~~l~~~g~d~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~iPvi~~Ggi~~~~~a~~~l~~g~aD~V~~gR~ 312 (671)
T 1ps9_A 233 LAQAIEAAGATIINTGIGWHEARIPTIATPVPRGAFSWVTRKLKGHVSLPLVTTNRINDPQVADDILSRGDADMVSMARP 312 (671)
T ss_dssp HHHHHHHHTCSEEEEEECBTTCSSCSSSTTSCTTTTHHHHHHHTTSCSSCEEECSSCCSHHHHHHHHHTTSCSEEEESTH
T ss_pred HHHHHHhcCCCEEEcCCCccccccccccccCCcchHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHcCCCCEEEeCHH
Confidence 33444445777776653110 00112577889999999999999999 7999999984 999999999
Q ss_pred EeecCe
Q psy9039 243 FKQGGR 248 (251)
Q Consensus 243 ~~~~g~ 248 (251)
|..|-.
T Consensus 313 ~l~~P~ 318 (671)
T 1ps9_A 313 FLADAE 318 (671)
T ss_dssp HHHCTT
T ss_pred HHhCcH
Confidence 987643
|
| >4a29_A Engineered retro-aldol enzyme RA95.0; de novo protein, engineered enzyme, retro-aldolase, directed evolution; HET: 3NK MLT; 1.10A {Synthetic construct} PDB: 4a2s_A* 4a2r_A* 3tc7_A 3tc6_A 3nl8_A* 3nxf_A* 3o6y_X 3ud6_A* 1igs_A 1juk_A 1jul_A* 3hoj_A 1a53_A* 1lbf_A* 1lbl_A* 3nyz_A 3nz1_A* 3uy7_A 3uxd_A* 3uxa_A* ... | Back alignment and structure |
|---|
Probab=97.83 E-value=0.00015 Score=63.27 Aligned_cols=163 Identities=12% Similarity=0.136 Sum_probs=107.4
Q ss_pred CcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHHHHHHHHcCccceecccc
Q psy9039 45 SVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQAAGLDFIRAESF 124 (251)
Q Consensus 45 l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g~~Fir~~~~ 124 (251)
+.++|+ ++|-|-++- +|-.. ...-++++|+.++ +|+---=|.-+ .+++.-|.+.|++-+=.-+
T Consensus 72 ~~~~GA-~aiSVLTd~--~~F~G----------s~~~L~~vr~~v~--lPvLrKDFiid-~yQI~eAr~~GADaILLI~- 134 (258)
T 4a29_A 72 FMERYA-VGLSITTEE--KYFNG----------SYETLRKIASSVS--IPILMSDFIVK-ESQIDDAYNLGADTVLLIV- 134 (258)
T ss_dssp HHTTTC-SEEEEECCS--TTTCC----------CHHHHHHHHTTCS--SCEEEESCCCS-HHHHHHHHHHTCSEEEEEG-
T ss_pred HHhCCC-eEEEEeCCC--CCCCC----------CHHHHHHHHHhcC--CCEeecccccc-HHHHHHHHHcCCCeeehHH-
Confidence 456899 998874433 44443 2344678888888 79644333334 5778888888888765310
Q ss_pred cccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHhhccCCCCCCcccHHHHHHHhhhccccEEEecCCCCC-CCCCH
Q psy9039 125 VFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSSHAITADVDITETAKAASFFLSDGLIITGNATG-DPADV 203 (251)
Q Consensus 125 ~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~~~~~D~v~VTG~~~g-~~~~~ 203 (251)
+.++ .....++..+.+.+|.+-+-. | | .++..+.|...+++.++|....-. ...++
T Consensus 135 --a~L~-----~~~l~~l~~~A~~lGl~~LvE---V------h-------~~~El~rAl~~~a~iIGINNRnL~tf~vdl 191 (258)
T 4a29_A 135 --KILT-----ERELESLLEYARSYGMEPLIL---I------N-------DENDLDIALRIGARFIGIMSRDFETGEINK 191 (258)
T ss_dssp --GGSC-----HHHHHHHHHHHHHTTCCCEEE---E------S-------SHHHHHHHHHTTCSEEEECSBCTTTCCBCH
T ss_pred --hhcC-----HHHHHHHHHHHHHHhHHHHHh---c------c-------hHHHHHHHhcCCCcEEEEeCCCccccccCH
Confidence 1111 112567888888888732221 1 1 133345555568999999765322 34567
Q ss_pred HHHHHHHhcC--CCCEEEecCC-ChHhHHHhhc--CCEEEEeceEeecC
Q psy9039 204 SQLMSVKNAV--DLPILIGSGV-TSDNVEHYMT--ADALIIGSHFKQGG 247 (251)
Q Consensus 204 ~~l~~vr~~~--~~PV~vG~GI-~~~~v~~~~~--ADGvIVGS~~~~~g 247 (251)
+...++.+.. +..++.-+|| |++++..+.. +||+.||++|++..
T Consensus 192 ~~t~~L~~~ip~~~~~VsESGI~t~~dv~~l~~~G~~a~LVGealmr~~ 240 (258)
T 4a29_A 192 ENQRKLISMIPSNVVKVAKLGISERNEIEELRKLGVNAFLISSSLMRNP 240 (258)
T ss_dssp HHHHHHHTTSCTTSEEEEEESSCCHHHHHHHHHTTCCEEEECHHHHHCT
T ss_pred HHHHHHHhhCCCCCEEEEcCCCCCHHHHHHHHHCCCCEEEECHHHhCCC
Confidence 7777777765 6888999999 7999999986 99999999999854
|
| >4aaj_A N-(5'-phosphoribosyl)anthranilate isomerase; alpha/beta-barrel, hyperthermophilic, phosphoribo isomerase; 1.75A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=97.82 E-value=4.8e-05 Score=65.49 Aligned_cols=132 Identities=17% Similarity=0.281 Sum_probs=77.0
Q ss_pred cEEEEEeeCChHHHHHHHHHcCccceecccccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHhhccCCCCCCcc
Q psy9039 94 PVGVQILSGCNKAALATAQAAGLDFIRAESFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSSHAITADV 173 (251)
Q Consensus 94 P~Gvn~~~N~~~~~~~ia~a~g~~Fir~~~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~k~~~~~~~~~~ 173 (251)
++.+-++.|. .+........+.++++.. | + .+.+.+..++++++..-++.+ . ++. ..+.
T Consensus 72 ~~~v~v~v~~-~ei~~~i~~~~ld~vQLH---G----~-----E~~~~~~~l~~~~~~~viKa~---~----v~~-~~~~ 130 (228)
T 4aaj_A 72 VFLVSTMVGF-SEWAMAIERTGAQYIQVH---S----N-----ALPQTIDTLKKEFGVFVMKAF---R----VPT-ISKN 130 (228)
T ss_dssp EEEEECCCCH-HHHHHHHHHHTCSEEEEC---S----C-----CCHHHHHHHHHHHCCEEEEEE---E----CCS-SCSC
T ss_pred CEEEeccCch-HHHHHHHHhccchheecc---c----c-----cCHHHHHHHhhccCceEEEEE---E----ecc-cccc
Confidence 5667777774 344445556677888864 2 1 123445566777765444443 1 111 1111
Q ss_pred ---cHHHHHHHhhhccccEEEe-cCCCCCCCCCHHHHHHHHhcCCCCEEEecCCChHhHHHhhc---CCEEEEeceEeec
Q psy9039 174 ---DITETAKAASFFLSDGLII-TGNATGDPADVSQLMSVKNAVDLPILIGSGVTSDNVEHYMT---ADALIIGSHFKQG 246 (251)
Q Consensus 174 ---~i~~~a~~a~~~~~D~v~V-TG~~~g~~~~~~~l~~vr~~~~~PV~vG~GI~~~~v~~~~~---ADGvIVGS~~~~~ 246 (251)
...........+.+|++.. |+..+|..-+++.++.+.. +.|++++||+||+|++++++ ..|+=|-|.+..+
T Consensus 131 ~~~~~~~~~~~~~~~~~d~~LlDs~GGtG~~fDW~~~~~~~~--~~p~iLAGGL~peNV~~Ai~~~~P~gVDVsSGVEs~ 208 (228)
T 4aaj_A 131 PEEDANRLLSEISRYNADMVLLDTGAGSGKLHDLRVSSLVAR--KIPVIVAGGLNAENVEEVIKVVKPYGVDVSSGVEKY 208 (228)
T ss_dssp HHHHHHHHHHHHHHSCCSEEEEEC-------CCCHHHHHHHH--HSCEEEESSCCTTTHHHHHHHHCCSEEEESGGGEET
T ss_pred hhhhHHHHHHHHhccCCCEEccCCCCCCcCcCChHHHHHhhh--cCCeEEECCCCHHHHHHHHHHhCCCEEEeCCCCCCC
Confidence 1111222222356787655 4445565567787776654 47999999999999999874 8999999999877
Q ss_pred Ce
Q psy9039 247 GR 248 (251)
Q Consensus 247 g~ 248 (251)
|+
T Consensus 209 G~ 210 (228)
T 4aaj_A 209 GI 210 (228)
T ss_dssp TE
T ss_pred CC
Confidence 75
|
| >2agk_A 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) methylideneamino] imidazole-4-carboxamide...; TIM alpha/beta barrel; HET: CIT; 1.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.80 E-value=1.3e-05 Score=70.16 Aligned_cols=177 Identities=16% Similarity=0.140 Sum_probs=104.7
Q ss_pred CCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHHHHHHHHcCccceecc
Q psy9039 43 PPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQAAGLDFIRAE 122 (251)
Q Consensus 43 ~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g~~Fir~~ 122 (251)
+.+.+.|+ |.+.+.+..+ .....++++.+.++ .|+-+-.=... . ...-.. .|++-+-.
T Consensus 45 ~~~~~~Ga-~~l~vvDL~~---------------~n~~~i~~i~~~~~--~pv~vgGGir~-~-~~~~~l-~Ga~~Vii- 102 (260)
T 2agk_A 45 KLYKDRDV-QGCHVIKLGP---------------NNDDAAREALQESP--QFLQVGGGIND-T-NCLEWL-KWASKVIV- 102 (260)
T ss_dssp HHHHHTTC-TTCEEEEESS---------------SCHHHHHHHHHHST--TTSEEESSCCT-T-THHHHT-TTCSCEEE-
T ss_pred HHHHHcCC-CEEEEEeCCC---------------CCHHHHHHHHhcCC--ceEEEeCCCCH-H-HHHHHh-cCCCEEEE-
Confidence 55678899 9888755553 14456777777777 67665432222 2 222222 55554443
Q ss_pred cccccccCCC-ceeecCcchhHHHHHhcCCCcchhhhhhH---h-----h-ccCCCCCCcccHH-HHHHHhhhccccEEE
Q psy9039 123 SFVFGHMADE-GLMNAQAGPLLRYRKQIGADNVLVFTDIK---K-----K-HSSHAITADVDIT-ETAKAASFFLSDGLI 191 (251)
Q Consensus 123 ~~~~~~~~~~-Gli~~da~e~~~~r~~l~~~~i~i~a~v~---~-----k-~~~~~~~~~~~i~-~~a~~a~~~~~D~v~ 191 (251)
|..+-.+ |-+. .+.+.+..++++...+-+--|+. . + +|..- .+..... +.++..+.+ ++.++
T Consensus 103 ---gs~a~~~~g~~~--p~~~~~~~~~~g~~~ivv~iD~k~~~~~g~~V~~~gw~~-~t~~~~~~e~a~~~~~~-a~~il 175 (260)
T 2agk_A 103 ---TSWLFTKEGHFQ--LKRLERLTELCGKDRIVVDLSCRKTQDGRWIVAMNKWQT-LTDLELNADTFRELRKY-TNEFL 175 (260)
T ss_dssp ---CGGGBCTTCCBC--HHHHHHHHHHHCGGGEEEEEEEEEEETTEEEEEETTTTE-EEEEEESHHHHHHHTTT-CSEEE
T ss_pred ---CcHHHhhcCCCC--HHHHHHHHHHhCcCcEEEEEEeeecCCCceEEEEcCCcc-ccCccHHHHHHHHHHHh-cCEEE
Confidence 2222122 3332 34455666666633322211221 0 0 11110 0111223 677777767 99999
Q ss_pred ecCCCC-C--CCCCHHHHHHHHhcC----CCCEEEecCC-ChHhHHHhhc----CCEEEEeceE-eecCe
Q psy9039 192 ITGNAT-G--DPADVSQLMSVKNAV----DLPILIGSGV-TSDNVEHYMT----ADALIIGSHF-KQGGR 248 (251)
Q Consensus 192 VTG~~~-g--~~~~~~~l~~vr~~~----~~PV~vG~GI-~~~~v~~~~~----ADGvIVGS~~-~~~g~ 248 (251)
+|+... | ..+++++++++++.+ ++||+++||| +++++.++++ +||+++||+| ..+|.
T Consensus 176 ~t~i~~dG~~~G~d~eli~~l~~~~~~~~~iPVIasGGi~s~ed~~~l~~~~~G~~gvivg~al~l~~g~ 245 (260)
T 2agk_A 176 IHAADVEGLCGGIDELLVSKLFEWTKDYDDLKIVYAGGAKSVDDLKLVDELSHGKVDLTFGSSLDIFGGN 245 (260)
T ss_dssp EEC-------CCCCHHHHHHHHHHHTTCSSCEEEEESCCCCTHHHHHHHHHHTTCEEEECCTTBGGGTCS
T ss_pred EEeeccccCcCCCCHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHhcCCCCEEEeeCCHHHcCCC
Confidence 998543 2 235789999999999 9999999999 7899998873 7999999998 66666
|
| >2hsa_B 12-oxophytodienoate reductase 3; alpha beta 8 barrel, flavoprotein, jasmonate biosynthesis, oxidoreductase; HET: FMN; 1.50A {Solanum lycopersicum} PDB: 2hs6_A* 3hgs_A* 2hs8_A* 3hgo_A* 1q45_A* 2g5w_A* 2q3o_A* | Back alignment and structure |
|---|
Probab=97.80 E-value=7.4e-05 Score=69.39 Aligned_cols=158 Identities=13% Similarity=0.135 Sum_probs=96.4
Q ss_pred hHHHHHHHHHhhCCCCcCCCCccEEEEeecCC-------CCccccCCC---ch--HHHHHHHHHHHHHHHhCCCCccEEE
Q psy9039 30 NMTRLCAEIRKVLPPSVPVGVQHGVIVENMHD-------VPYVLEAES---GP--EITANMTRLCAEIRKVLPPSVPVGV 97 (251)
Q Consensus 30 ~~~~i~~~a~~~a~~l~~~Gv~D~i~ieN~~~-------~Pf~~p~~~---gp--~i~aa~~~~i~~vr~~~~~~~P~Gv 97 (251)
.++.+++.-.+.|+.+.++|+ |+|+|-=-.| -|++....| |. -...-+.++++++|+.+++. |+++
T Consensus 165 eI~~ii~~f~~AA~~a~~AGf-DgVEIh~ahGYLl~QFLsp~~N~RtD~yGGslenR~rf~~Eiv~aVr~avg~~-~V~v 242 (402)
T 2hsa_B 165 EISQVVEDYRRSALNAIEAGF-DGIEIHGAHGYLIDQFLKDGINDRTDEYGGSLANRCKFITQVVQAVVSAIGAD-RVGV 242 (402)
T ss_dssp GHHHHHHHHHHHHHHHHHTTC-SEEEEECCTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCGG-GEEE
T ss_pred HHHHHHHHHHHHHHHHHHcCC-CEEEECCccchHHHhccCCccCccCCccCcChhhhhHHHHHHHHHHHHHhCCC-cEEE
Confidence 578888888888888889999 9999721111 276443222 22 12233446788888877533 6666
Q ss_pred EEeeCChHHHHHHHHHcCccceecccccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHhhccCCCCCCcccHHH
Q psy9039 98 QILSGCNKAALATAQAAGLDFIRAESFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSSHAITADVDITE 177 (251)
Q Consensus 98 n~~~N~~~~~~~ia~a~g~~Fir~~~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~k~~~~~~~~~~~i~~ 177 (251)
=+-.+ ++.. |+-..+ +.....+
T Consensus 243 Rls~~--------------~~~~------------g~~~~~--------------------------------~~~~~~~ 264 (402)
T 2hsa_B 243 RVSPA--------------IDHL------------DAMDSN--------------------------------PLSLGLA 264 (402)
T ss_dssp EECSS--------------CCST------------TCCCSC--------------------------------HHHHHHH
T ss_pred Eeccc--------------cccC------------CCCCCC--------------------------------CHHHHHH
Confidence 43211 1100 000000 0011223
Q ss_pred HHHHhhhcc------ccEEEecCCCCCC---CC---------CHHHHHHHHhcCCCCEEEecCCChHhHHHhhc---CCE
Q psy9039 178 TAKAASFFL------SDGLIITGNATGD---PA---------DVSQLMSVKNAVDLPILIGSGVTSDNVEHYMT---ADA 236 (251)
Q Consensus 178 ~a~~a~~~~------~D~v~VTG~~~g~---~~---------~~~~l~~vr~~~~~PV~vG~GI~~~~v~~~~~---ADG 236 (251)
+++..+..| +|++-+++..... .+ ..+.++++|+.+++||++.|||+++.+.+++. ||+
T Consensus 265 la~~le~~G~~gg~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~vk~~~~iPvi~~G~i~~~~a~~~l~~g~aD~ 344 (402)
T 2hsa_B 265 VVERLNKIQLHSGSKLAYLHVTQPRYVAYGQTEAGRLGSEEEEARLMRTLRNAYQGTFICSGGYTRELGIEAVAQGDADL 344 (402)
T ss_dssp HHHHHHHHHHHHTSCCSEEEEECCCCCTTTTSSSTTTTHHHHHHHHHHHHHHHCSSCEEEESSCCHHHHHHHHHTTSCSE
T ss_pred HHHHHHhcCCccCCceEEEEEecCccccccCCccccccCCcchHHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHCCCCce
Confidence 334444346 8888887643211 11 23567789999999999999999999999884 999
Q ss_pred EEEeceEeecC
Q psy9039 237 LIIGSHFKQGG 247 (251)
Q Consensus 237 vIVGS~~~~~g 247 (251)
|.+|..|..|-
T Consensus 345 V~igR~~l~dP 355 (402)
T 2hsa_B 345 VSYGRLFISNP 355 (402)
T ss_dssp EEESHHHHHCT
T ss_pred eeecHHHHhCc
Confidence 99999987764
|
| >1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A* | Back alignment and structure |
|---|
Probab=97.77 E-value=7.7e-05 Score=76.67 Aligned_cols=157 Identities=20% Similarity=0.276 Sum_probs=91.2
Q ss_pred HHHHHHHHHHhCCCCccEEEEEeeC-Ch---HHHHHHHHHcCccceecccccccccCCC--c-eeecCc---chhHH-HH
Q psy9039 78 MTRLCAEIRKVLPPSVPVGVQILSG-CN---KAALATAQAAGLDFIRAESFVFGHMADE--G-LMNAQA---GPLLR-YR 146 (251)
Q Consensus 78 ~~~~i~~vr~~~~~~~P~Gvn~~~N-~~---~~~~~ia~a~g~~Fir~~~~~~~~~~~~--G-li~~da---~e~~~-~r 146 (251)
+.+-++++++..++ .|+++|++.. +. ......+...|++++..+.-+-...... | .+..+. .++++ .+
T Consensus 621 ~~~~i~~~~~~~~~-~~~i~~i~~g~~~~~~~~~a~~~~~~g~d~iein~~~P~~~~~~~~G~~~~~~~~~~~~iv~~v~ 699 (1025)
T 1gte_A 621 WCQSVTELKADFPD-NIVIASIMCSYNKNDWMELSRKAEASGADALELNLSCPHGMGERGMGLACGQDPELVRNICRWVR 699 (1025)
T ss_dssp HHHHHHHHHHHCTT-SEEEEEECCCSCHHHHHHHHHHHHHTTCSEEEEECCCBCCCC-----SBGGGCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCC-CCeEEEecCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCCCCCCCcccccccCHHHHHHHHHHHH
Confidence 34445677776644 4999998643 21 1223333446788888864332211111 1 111121 12222 22
Q ss_pred HhcCCCcchhhhhhHhhccCCCCCCcccHHHHHHHhhhccccEEEecCC-----------------------CCCC---C
Q psy9039 147 KQIGADNVLVFTDIKKKHSSHAITADVDITETAKAASFFLSDGLIITGN-----------------------ATGD---P 200 (251)
Q Consensus 147 ~~l~~~~i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~~~~~D~v~VTG~-----------------------~~g~---~ 200 (251)
+.. .+.++. |.. + .-..+.++++.+...|+|++.+|++ ..+. +
T Consensus 700 ~~~---~~Pv~v----K~~-~---~~~~~~~~a~~~~~~G~d~i~v~Nt~~~~~~~~~~~~~~~~~~~~gr~~~gg~sg~ 768 (1025)
T 1gte_A 700 QAV---QIPFFA----KLT-P---NVTDIVSIARAAKEGGADGVTATNTVSGLMGLKADGTPWPAVGAGKRTTYGGVSGT 768 (1025)
T ss_dssp HHC---SSCEEE----EEC-S---CSSCHHHHHHHHHHHTCSEEEECCCEEECCCBCTTSCBSSCBTTTTBBCCEEEESG
T ss_pred Hhh---CCceEE----EeC-C---ChHHHHHHHHHHHHcCCCEEEEeccccccccccccccccccccccccccCCCCCcc
Confidence 222 122221 211 1 1124677788887789999999531 1111 1
Q ss_pred CC----HHHHHHHHhcC-CCCEEEecCC-ChHhHHHhhc--CCEEEEeceEeec
Q psy9039 201 AD----VSQLMSVKNAV-DLPILIGSGV-TSDNVEHYMT--ADALIIGSHFKQG 246 (251)
Q Consensus 201 ~~----~~~l~~vr~~~-~~PV~vG~GI-~~~~v~~~~~--ADGvIVGS~~~~~ 246 (251)
.. ++.+.++++.+ ++||+..||| |++++.+++. ||+|.||++|...
T Consensus 769 ~~~~~~~~~v~~v~~~~~~ipvi~~GGI~s~~da~~~l~~Ga~~v~vg~~~l~~ 822 (1025)
T 1gte_A 769 AIRPIALRAVTTIARALPGFPILATGGIDSAESGLQFLHSGASVLQVCSAVQNQ 822 (1025)
T ss_dssp GGHHHHHHHHHHHHHHSTTCCEEEESSCCSHHHHHHHHHTTCSEEEESHHHHTS
T ss_pred cchhHHHHHHHHHHHHcCCCCEEEecCcCCHHHHHHHHHcCCCEEEEeeccccC
Confidence 11 35788899888 8999999999 7999999885 9999999998863
|
| >2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.75 E-value=5.1e-05 Score=65.73 Aligned_cols=71 Identities=15% Similarity=0.167 Sum_probs=57.3
Q ss_pred cHHHHHHHhhhccccEEEecCCCC---CCCCCHHHHHHHHhcCCCCEEEecCC-ChHhHHHhhc--CCEEEEeceEe
Q psy9039 174 DITETAKAASFFLSDGLIITGNAT---GDPADVSQLMSVKNAVDLPILIGSGV-TSDNVEHYMT--ADALIIGSHFK 244 (251)
Q Consensus 174 ~i~~~a~~a~~~~~D~v~VTG~~~---g~~~~~~~l~~vr~~~~~PV~vG~GI-~~~~v~~~~~--ADGvIVGS~~~ 244 (251)
+..+.++.....|+|.+.+|.... +.....+.++++++.+++|+++++|| +.+++.+++. ||++++||.+.
T Consensus 31 ~~~~~a~~~~~~Ga~~i~v~d~~~~~~~~g~~~~~i~~i~~~~~iPvi~~ggi~~~~~i~~~~~~Gad~v~lg~~~~ 107 (266)
T 2w6r_A 31 LLRDWVVEVEKRGAGEILLTSIDRDGTKSGYDTEMIRFVRPLTTLPIIASGGAGKMEHFLEAFLAGADKALAASVFH 107 (266)
T ss_dssp EHHHHHHHHHHHTCSEEEEEETTTSSCSSCCCHHHHHHHGGGCCSCEEEESCCCSTHHHHHHHHHTCSEEECCCCC-
T ss_pred CHHHHHHHHHHCCCCEEEEEecCcccCCCcccHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcCCcHhhhhHHHH
Confidence 456667776668999999987432 23345789999999999999999999 5799998886 99999999987
|
| >3oix_A Putative dihydroorotate dehydrogenase; dihydrooro oxidase; TIM barrel, oxidoreductase; HET: MLY FMN; 2.40A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=97.75 E-value=0.00011 Score=66.85 Aligned_cols=44 Identities=18% Similarity=0.291 Sum_probs=38.2
Q ss_pred HHHHHHHHhcC--CCCEEEecCC-ChHhHHHhhc--CCEEEEeceEeec
Q psy9039 203 VSQLMSVKNAV--DLPILIGSGV-TSDNVEHYMT--ADALIIGSHFKQG 246 (251)
Q Consensus 203 ~~~l~~vr~~~--~~PV~vG~GI-~~~~v~~~~~--ADGvIVGS~~~~~ 246 (251)
++.+.++++.+ ++||+..||| |++++.+++. ||+|.|||+|...
T Consensus 262 ~~~v~~i~~~~~~~ipIIg~GGI~s~~da~~~l~aGAd~V~igra~~~~ 310 (345)
T 3oix_A 262 LANVHAFYKRLNPSIQIIGTGGVXTGRDAFEHILCGASMVQIGTALHQE 310 (345)
T ss_dssp HHHHHHHHTTSCTTSEEEEESSCCSHHHHHHHHHHTCSEEEESHHHHHH
T ss_pred HHHHHHHHHHcCCCCcEEEECCCCChHHHHHHHHhCCCEEEEChHHHhc
Confidence 46788999998 7999999999 7999998886 9999999995443
|
| >1p0k_A Isopentenyl-diphosphate delta-isomerase; terpene biosynthesis, dimethylallyl diphosphate, flavoprotein; 1.90A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1p0n_A* | Back alignment and structure |
|---|
Probab=97.75 E-value=2.7e-05 Score=70.63 Aligned_cols=71 Identities=13% Similarity=0.149 Sum_probs=53.8
Q ss_pred HHHHHHhhhccccEEEecCC-----------CC---------CCCCCHHHHHHHHhcC-CCCEEEecCC-ChHhHHHhhc
Q psy9039 176 TETAKAASFFLSDGLIITGN-----------AT---------GDPADVSQLMSVKNAV-DLPILIGSGV-TSDNVEHYMT 233 (251)
Q Consensus 176 ~~~a~~a~~~~~D~v~VTG~-----------~~---------g~~~~~~~l~~vr~~~-~~PV~vG~GI-~~~~v~~~~~ 233 (251)
.+.++.+...|+|++.++|. +. +..+..+.|.++++.. ++||++.||| |++++.+++.
T Consensus 192 ~~~a~~a~~~Gad~I~v~~~ggt~~~~~e~~r~~~~~~~~~~~g~~~~~~l~~v~~~~~~ipvia~GGI~~~~d~~k~l~ 271 (349)
T 1p0k_A 192 KASAGKLYEAGAAAVDIGGYGGTNFSKIENLRRQRQISFFNSWGISTAASLAEIRSEFPASTMIASGGLQDALDVAKAIA 271 (349)
T ss_dssp HHHHHHHHHHTCSEEEEEC---------------CCGGGGTTCSCCHHHHHHHHHHHCTTSEEEEESSCCSHHHHHHHHH
T ss_pred HHHHHHHHHcCCCEEEEcCCCCcchhhHHHhhcccchhhhhccCccHHHHHHHHHHhcCCCeEEEECCCCCHHHHHHHHH
Confidence 34566666679999999653 21 1223456788888876 8999999999 7999999875
Q ss_pred --CCEEEEeceEeec
Q psy9039 234 --ADALIIGSHFKQG 246 (251)
Q Consensus 234 --ADGvIVGS~~~~~ 246 (251)
||+|.|||+|...
T Consensus 272 ~GAd~V~iG~~~l~~ 286 (349)
T 1p0k_A 272 LGASCTGMAGHFLKA 286 (349)
T ss_dssp TTCSEEEECHHHHHH
T ss_pred cCCCEEEEcHHHHHH
Confidence 9999999998753
|
| >1nvm_A HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: a.5.7.1 c.1.10.5 | Back alignment and structure |
|---|
Probab=97.74 E-value=1.5e-05 Score=72.53 Aligned_cols=157 Identities=13% Similarity=0.189 Sum_probs=97.4
Q ss_pred CCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCCh-HHHHHHHHHcCccceec
Q psy9039 43 PPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCN-KAALATAQAAGLDFIRA 121 (251)
Q Consensus 43 ~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~-~~~~~ia~a~g~~Fir~ 121 (251)
+.|.+.|+ |.||+-.-.|.||++|.+ ||.... -...++++++..++ .|+.++++.|.+ ..-+.-|...|.+.+++
T Consensus 37 ~~L~~~Gv-d~IEvG~~~g~p~ssp~~-g~~~~~-~~e~l~~i~~~~~~-~~i~~l~~p~~~~~~~i~~a~~aGvd~v~I 112 (345)
T 1nvm_A 37 RALDKAKV-DSIEVAHGDGLQGSSFNY-GFGRHT-DLEYIEAVAGEISH-AQIATLLLPGIGSVHDLKNAYQAGARVVRV 112 (345)
T ss_dssp HHHHHHTC-SEEECSCTTSTTCCBTTT-BCCSSC-HHHHHHHHHTTCSS-SEEEEEECBTTBCHHHHHHHHHHTCCEEEE
T ss_pred HHHHHcCC-CEEEEecCCCCCCCCCcc-cCCCCC-HHHHHHHHHhhCCC-CEEEEEecCCcccHHHHHHHHhCCcCEEEE
Confidence 67888999 999752222499999875 663332 23456777776554 588888655321 33455566678888776
Q ss_pred ccccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHhhccCCCCCCcccHHHHHHHhhhccccEEEecCCCCCCC-
Q psy9039 122 ESFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSSHAITADVDITETAKAASFFLSDGLIITGNATGDP- 200 (251)
Q Consensus 122 ~~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~~~~~D~v~VTG~~~g~~- 200 (251)
.. .+.+ .....+..++.++.|..-...+.+ . + .++.+++.++++.+..+|++.+.+.++. |..
T Consensus 113 ~~----~~s~----~~~~~~~i~~ak~~G~~v~~~~~~-a-----~-~~~~e~~~~ia~~~~~~Ga~~i~l~DT~-G~~~ 176 (345)
T 1nvm_A 113 AT----HCTE----ADVSKQHIEYARNLGMDTVGFLMM-S-----H-MIPAEKLAEQGKLMESYGATCIYMADSG-GAMS 176 (345)
T ss_dssp EE----ETTC----GGGGHHHHHHHHHHTCEEEEEEES-T-----T-SSCHHHHHHHHHHHHHHTCSEEEEECTT-CCCC
T ss_pred EE----eccH----HHHHHHHHHHHHHCCCEEEEEEEe-C-----C-CCCHHHHHHHHHHHHHCCCCEEEECCCc-CccC
Confidence 31 1111 123567777888887633322221 1 1 1455678888887776789988876652 332
Q ss_pred C-CH-HHHHHHHhcC--CCCEEE
Q psy9039 201 A-DV-SQLMSVKNAV--DLPILI 219 (251)
Q Consensus 201 ~-~~-~~l~~vr~~~--~~PV~v 219 (251)
+ .. ++++++|+.+ ++|+.+
T Consensus 177 P~~v~~lv~~l~~~~~~~~pi~~ 199 (345)
T 1nvm_A 177 MNDIRDRMRAFKAVLKPETQVGM 199 (345)
T ss_dssp HHHHHHHHHHHHHHSCTTSEEEE
T ss_pred HHHHHHHHHHHHHhcCCCceEEE
Confidence 2 23 6788999988 788877
|
| >1pii_A N-(5'phosphoribosyl)anthranilate isomerase; bifunctional(isomerase and synthase); 2.00A {Escherichia coli} SCOP: c.1.2.4 c.1.2.4 PDB: 1jcm_P* 2kzh_A | Back alignment and structure |
|---|
Probab=97.73 E-value=4.2e-05 Score=72.07 Aligned_cols=165 Identities=13% Similarity=0.090 Sum_probs=106.5
Q ss_pred CCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHHHHHHHHcCccceecc
Q psy9039 43 PPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQAAGLDFIRAE 122 (251)
Q Consensus 43 ~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g~~Fir~~ 122 (251)
++++++ + .+|-+-.+ -+|-.. ...-++++|+.++ .|+---=|.-+ .++..-+.+.|++-+-..
T Consensus 75 ~~y~~~-A-~~IsvLTd--~~~F~g----------s~~dL~~vr~~v~--lPvLrKDFI~d-~~Qi~ea~~~GAD~ILLi 137 (452)
T 1pii_A 75 AIYKHY-A-SAISVLTD--EKYFQG----------SFNFLPIVSQIAP--QPILCKDFIID-PYQIYLARYYQADACLLM 137 (452)
T ss_dssp HHHTTT-C-SEEEEECC--STTTCC----------CTTHHHHHHHHCC--SCEEEESCCCS-HHHHHHHHHTTCSEEEEE
T ss_pred HHHHhh-C-cEEEEEec--ccccCC----------CHHHHHHHHHhcC--CCeEEEeccCC-HHHHHHHHHcCCCEEEEE
Confidence 445566 7 88776332 233332 1234567888888 79854444444 456666888898887753
Q ss_pred cccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHhhccCCCCCCcccHHHHHHHhhhccccEEEecCCCC-CCCC
Q psy9039 123 SFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSSHAITADVDITETAKAASFFLSDGLIITGNAT-GDPA 201 (251)
Q Consensus 123 ~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~~~~~D~v~VTG~~~-g~~~ 201 (251)
+ +.+. ..+..++.++.+.+|. ..+.++ ...+.++.|...|+|.++++-..- ....
T Consensus 138 ~---a~l~-----~~~l~~l~~~a~~lgm---~~LvEv-------------h~~eE~~~A~~lga~iIGinnr~L~t~~~ 193 (452)
T 1pii_A 138 L---SVLD-----DDQYRQLAAVAHSLEM---GVLTEV-------------SNEEEQERAIALGAKVVGINNRDLRDLSI 193 (452)
T ss_dssp T---TTCC-----HHHHHHHHHHHHHTTC---EEEEEE-------------CSHHHHHHHHHTTCSEEEEESEETTTTEE
T ss_pred c---ccCC-----HHHHHHHHHHHHHcCC---eEEEEe-------------CCHHHHHHHHHCCCCEEEEeCCCCCCCCC
Confidence 1 1111 1235667777778775 222222 223445566666999999987532 2344
Q ss_pred CHHHHHHHHhcC--CCCEEEecCC-ChHhHHHhhc-CCEEEEeceEeecCe
Q psy9039 202 DVSQLMSVKNAV--DLPILIGSGV-TSDNVEHYMT-ADALIIGSHFKQGGR 248 (251)
Q Consensus 202 ~~~~l~~vr~~~--~~PV~vG~GI-~~~~v~~~~~-ADGvIVGS~~~~~g~ 248 (251)
+++...++.+.. +++++..||| |++++..+.. |||+.|||+|++..+
T Consensus 194 dl~~~~~L~~~ip~~~~vIaEsGI~t~edv~~~~~~a~avLVGealmr~~d 244 (452)
T 1pii_A 194 DLNRTRELAPKLGHNVTVISESGINTYAQVRELSHFANGFLIGSALMAHDD 244 (452)
T ss_dssp CTHHHHHHHHHHCTTSEEEEESCCCCHHHHHHHTTTCSEEEECHHHHTCSC
T ss_pred CHHHHHHHHHhCCCCCeEEEECCCCCHHHHHHHHHhCCEEEEcHHHcCCcC
Confidence 666666666554 6899999999 7999999998 999999999988643
|
| >1eep_A Inosine 5'-monophosphate dehydrogenase; alpha-beta barrel, TIM barrel, IMPDH, IMP dehydrogenase, LOO purine biosynthesis, oxidoreductase; 2.40A {Borrelia burgdorferi} SCOP: c.1.5.1 | Back alignment and structure |
|---|
Probab=97.72 E-value=6.4e-05 Score=69.54 Aligned_cols=69 Identities=22% Similarity=0.296 Sum_probs=50.4
Q ss_pred HHHHHHhhhccccEEEecCCCCC----------C-CCCHHHHHHHHh---cCCCCEEEecCC-ChHhHHHhhc--CCEEE
Q psy9039 176 TETAKAASFFLSDGLIITGNATG----------D-PADVSQLMSVKN---AVDLPILIGSGV-TSDNVEHYMT--ADALI 238 (251)
Q Consensus 176 ~~~a~~a~~~~~D~v~VTG~~~g----------~-~~~~~~l~~vr~---~~~~PV~vG~GI-~~~~v~~~~~--ADGvI 238 (251)
.+.++.+...|+|++.|++ ..| . .+..+.+..+++ ..++||++.||| +++++.+++. ||+|.
T Consensus 205 ~~~a~~a~~~Gad~I~vg~-~~G~~~~~~~~~~~g~p~~~~l~~v~~~~~~~~ipVia~GGI~~~~d~~~ala~GAd~V~ 283 (404)
T 1eep_A 205 KEAALDLISVGADCLKVGI-GPGSICTTRIVAGVGVPQITAICDVYEACNNTNICIIADGGIRFSGDVVKAIAAGADSVM 283 (404)
T ss_dssp HHHHHHHHTTTCSEEEECS-SCSTTSHHHHHHCCCCCHHHHHHHHHHHHTTSSCEEEEESCCCSHHHHHHHHHHTCSEEE
T ss_pred HHHHHHHHhcCCCEEEECC-CCCcCcCccccCCCCcchHHHHHHHHHHHhhcCceEEEECCCCCHHHHHHHHHcCCCHHh
Confidence 4556777778999999942 111 1 223444555554 568999999999 6999999996 99999
Q ss_pred EeceEee
Q psy9039 239 IGSHFKQ 245 (251)
Q Consensus 239 VGS~~~~ 245 (251)
+||.|..
T Consensus 284 iG~~~l~ 290 (404)
T 1eep_A 284 IGNLFAG 290 (404)
T ss_dssp ECHHHHT
T ss_pred hCHHHhc
Confidence 9999853
|
| >1icp_A OPR1, 12-oxophytodienoate reductase 1; beta-alpha-barrel, protein-FMN-PEG complex, oxidoreductase; HET: FMN 2PE; 1.90A {Solanum lycopersicum} SCOP: c.1.4.1 PDB: 1icq_A* 1ics_A* 3hgr_A* 1vji_A* 2q3r_A* | Back alignment and structure |
|---|
Probab=97.67 E-value=0.0001 Score=67.84 Aligned_cols=158 Identities=11% Similarity=0.136 Sum_probs=96.9
Q ss_pred hHHHHHHHHHhhCCCCcCCCCccEEEEeecCCC-------CccccCCC---ch--HHHHHHHHHHHHHHHhCCCCccEEE
Q psy9039 30 NMTRLCAEIRKVLPPSVPVGVQHGVIVENMHDV-------PYVLEAES---GP--EITANMTRLCAEIRKVLPPSVPVGV 97 (251)
Q Consensus 30 ~~~~i~~~a~~~a~~l~~~Gv~D~i~ieN~~~~-------Pf~~p~~~---gp--~i~aa~~~~i~~vr~~~~~~~P~Gv 97 (251)
.++.+++.-.+.|+.+.++|+ |+|+|-=-.|. |.+....| |. -...-..++++++|+.++.. |+++
T Consensus 161 eI~~~i~~f~~AA~~a~~aGf-DgVEih~a~GyLl~qFlsp~~N~R~D~yGGslenR~r~~~eiv~aVr~avg~~-~V~v 238 (376)
T 1icp_A 161 EIPQIVNEFRVAARNAIEAGF-DGVEIHGAHGYLIDQFMKDQVNDRSDKYGGSLENRCRFALEIVEAVANEIGSD-RVGI 238 (376)
T ss_dssp THHHHHHHHHHHHHHHHHTTC-SEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCGG-GEEE
T ss_pred HHHHHHHHHHHHHHHHHHcCC-CEEEEcCccchhhhhccCCcccCCCCccCccHHHhHHHHHHHHHHHHHHhcCC-ceEE
Confidence 577777887888888889999 99997322222 66443222 21 12223445778888877633 6666
Q ss_pred EEeeCChHHHHHHHHHcCccceecccccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHhhccCCCCCCcccHHH
Q psy9039 98 QILSGCNKAALATAQAAGLDFIRAESFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSSHAITADVDITE 177 (251)
Q Consensus 98 n~~~N~~~~~~~ia~a~g~~Fir~~~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~k~~~~~~~~~~~i~~ 177 (251)
=+-.+ ++.. |+- +. .+.....+
T Consensus 239 rls~~--------------~~~~------------g~~--------------~~------------------~~~~~~~~ 260 (376)
T 1icp_A 239 RISPF--------------AHYN------------EAG--------------DT------------------NPTALGLY 260 (376)
T ss_dssp EECTT--------------CCTT------------TCC--------------CS------------------CHHHHHHH
T ss_pred Eeccc--------------cccC------------CCC--------------CC------------------CCHHHHHH
Confidence 54211 1100 000 00 00012234
Q ss_pred HHHHhhhccccEEEecCCCCCC--C--CCHHHHHHHHhcCCCCEEEecCCChHhHHHhhc---CCEEEEeceEeecC
Q psy9039 178 TAKAASFFLSDGLIITGNATGD--P--ADVSQLMSVKNAVDLPILIGSGVTSDNVEHYMT---ADALIIGSHFKQGG 247 (251)
Q Consensus 178 ~a~~a~~~~~D~v~VTG~~~g~--~--~~~~~l~~vr~~~~~PV~vG~GI~~~~v~~~~~---ADGvIVGS~~~~~g 247 (251)
+++..+.+|+|.+-+++..... + ...+.++++|+.+++||++++||+++.+.+++. ||+|.+|..|..|-
T Consensus 261 la~~le~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~vr~~~~iPvi~~G~i~~~~a~~~l~~g~aD~V~~gR~~l~~P 337 (376)
T 1icp_A 261 MVESLNKYDLAYCHVVEPRMKTAWEKIECTESLVPMRKAYKGTFIVAGGYDREDGNRALIEDRADLVAYGRLFISNP 337 (376)
T ss_dssp HHHHHGGGCCSEEEEECCSCCC------CCCCSHHHHHHCCSCEEEESSCCHHHHHHHHHTTSCSEEEESHHHHHCT
T ss_pred HHHHHHHcCCCEEEEcCCcccCCCCccccHHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHCCCCcEEeecHHHHhCc
Confidence 4555555688888887542110 1 123456788999999999999999999999884 99999999987764
|
| >2qr6_A IMP dehydrogenase/GMP reductase; NP_599840.1, G reductase domain, structural genomics, joint center for STR genomics, JCSG; HET: MSE; 1.50A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=97.67 E-value=0.00031 Score=64.63 Aligned_cols=68 Identities=25% Similarity=0.371 Sum_probs=50.4
Q ss_pred HHHHHhhhccccEEEecCC--CC-----C-CCCCHHHHHHHHhc-------CC---CCEEEecCC-ChHhHHHhhc--CC
Q psy9039 177 ETAKAASFFLSDGLIITGN--AT-----G-DPADVSQLMSVKNA-------VD---LPILIGSGV-TSDNVEHYMT--AD 235 (251)
Q Consensus 177 ~~a~~a~~~~~D~v~VTG~--~~-----g-~~~~~~~l~~vr~~-------~~---~PV~vG~GI-~~~~v~~~~~--AD 235 (251)
+.++.+...|+|++.| |. ++ + ..+..+.+.++++. ++ +||++.||| +++++.+++. ||
T Consensus 223 e~a~~~~~~Gad~i~v-g~Gg~~~~~~~~~g~~~~~~l~~v~~~~~~~~~~~~~~~ipvia~GGI~~~~dv~kalalGA~ 301 (393)
T 2qr6_A 223 TTALHMMRTGAVGIIV-GGGENTNSLALGMEVSMATAIADVAAARRDYLDETGGRYVHIIADGSIENSGDVVKAIACGAD 301 (393)
T ss_dssp HHHHHHHTTTCSEEEE-SCCSCCHHHHTSCCCCHHHHHHHHHHHHHHHHHHHTSCCCEEEECSSCCSHHHHHHHHHHTCS
T ss_pred HHHHHHHHcCCCEEEE-CCCcccccccCCCCCChHHHHHHHHHHHHHhHhhcCCcceEEEEECCCCCHHHHHHHHHcCCC
Confidence 3456666679999999 43 21 1 13445667666665 43 999999999 7999999886 99
Q ss_pred EEEEeceEee
Q psy9039 236 ALIIGSHFKQ 245 (251)
Q Consensus 236 GvIVGS~~~~ 245 (251)
+|.+||.|..
T Consensus 302 ~V~iG~~~l~ 311 (393)
T 2qr6_A 302 AVVLGSPLAR 311 (393)
T ss_dssp EEEECGGGGG
T ss_pred EEEECHHHHc
Confidence 9999999743
|
| >4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor} | Back alignment and structure |
|---|
Probab=97.66 E-value=4.4e-05 Score=72.70 Aligned_cols=71 Identities=14% Similarity=0.246 Sum_probs=51.5
Q ss_pred HHHHHHHhhhccccEEEecCCCCCC----------CCCHHHHHHHHhc---CCCCEEEecCC-ChHhHHHhhc--CCEEE
Q psy9039 175 ITETAKAASFFLSDGLIITGNATGD----------PADVSQLMSVKNA---VDLPILIGSGV-TSDNVEHYMT--ADALI 238 (251)
Q Consensus 175 i~~~a~~a~~~~~D~v~VTG~~~g~----------~~~~~~l~~vr~~---~~~PV~vG~GI-~~~~v~~~~~--ADGvI 238 (251)
..+.++.+...|+|++.|.+...+. .+..+.+.++.+. .++||++.||| +++++.+++. ||+|+
T Consensus 282 t~e~a~~l~~aGaD~I~Vg~g~Gs~~~tr~~~g~g~p~~~~i~~v~~~~~~~~iPVIa~GGI~~~~di~kala~GAd~V~ 361 (496)
T 4fxs_A 282 TAEGARALIEAGVSAVKVGIGPGSICTTRIVTGVGVPQITAIADAAGVANEYGIPVIADGGIRFSGDISKAIAAGASCVM 361 (496)
T ss_dssp SHHHHHHHHHHTCSEEEECSSCCTTBCHHHHHCCCCCHHHHHHHHHHHHGGGTCCEEEESCCCSHHHHHHHHHTTCSEEE
T ss_pred cHHHHHHHHHhCCCEEEECCCCCcCcccccccCCCccHHHHHHHHHHHhccCCCeEEEeCCCCCHHHHHHHHHcCCCeEE
Confidence 3455666666799999986321111 2345666666653 47999999999 7999998886 99999
Q ss_pred EeceEee
Q psy9039 239 IGSHFKQ 245 (251)
Q Consensus 239 VGS~~~~ 245 (251)
+||+|..
T Consensus 362 iGs~f~~ 368 (496)
T 4fxs_A 362 VGSMFAG 368 (496)
T ss_dssp ESTTTTT
T ss_pred ecHHHhc
Confidence 9998853
|
| >4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=97.63 E-value=4.2e-05 Score=72.70 Aligned_cols=70 Identities=24% Similarity=0.356 Sum_probs=51.5
Q ss_pred HHHHHHhhhccccEEEecCCC---------CCC-CCCHHHHHHHHhc---CCCCEEEecCC-ChHhHHHhhc--CCEEEE
Q psy9039 176 TETAKAASFFLSDGLIITGNA---------TGD-PADVSQLMSVKNA---VDLPILIGSGV-TSDNVEHYMT--ADALII 239 (251)
Q Consensus 176 ~~~a~~a~~~~~D~v~VTG~~---------~g~-~~~~~~l~~vr~~---~~~PV~vG~GI-~~~~v~~~~~--ADGvIV 239 (251)
.+.++.+...|+|++.|.+.. ++. .+..+.+.++++. .++||++.||| +++++.+++. ||+|.+
T Consensus 281 ~e~a~~l~~aGaD~I~vg~g~Gs~~~t~~~~g~g~p~~~~l~~v~~~~~~~~iPVIa~GGI~~~~di~kal~~GAd~V~v 360 (490)
T 4avf_A 281 AEAAKALAEAGADAVKVGIGPGSICTTRIVAGVGVPQISAIANVAAALEGTGVPLIADGGIRFSGDLAKAMVAGAYCVMM 360 (490)
T ss_dssp HHHHHHHHHTTCSEEEECSSCSTTCHHHHHTCBCCCHHHHHHHHHHHHTTTTCCEEEESCCCSHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHHHHcCCCEEEECCCCCcCCCccccCCCCccHHHHHHHHHHHhccCCCcEEEeCCCCCHHHHHHHHHcCCCeeee
Confidence 455677777899999983211 111 2345667777664 37999999999 7999999886 999999
Q ss_pred eceEee
Q psy9039 240 GSHFKQ 245 (251)
Q Consensus 240 GS~~~~ 245 (251)
||+|..
T Consensus 361 Gs~~~~ 366 (490)
T 4avf_A 361 GSMFAG 366 (490)
T ss_dssp CTTTTT
T ss_pred cHHHhc
Confidence 999754
|
| >3kts_A Glycerol uptake operon antiterminator regulatory; structural genomics, PSI-2, protein structur initiative; HET: UNL; 2.75A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=97.63 E-value=0.0001 Score=61.84 Aligned_cols=137 Identities=15% Similarity=0.158 Sum_probs=86.8
Q ss_pred HHHHHHHHHHhCCCCccEEE----EEeeCChHHHHHHHHHcCccceecccccccccCCCceeecCcchhHHHHHhcCCCc
Q psy9039 78 MTRLCAEIRKVLPPSVPVGV----QILSGCNKAALATAQAAGLDFIRAESFVFGHMADEGLMNAQAGPLLRYRKQIGADN 153 (251)
Q Consensus 78 ~~~~i~~vr~~~~~~~P~Gv----n~~~N~~~~~~~ia~a~g~~Fir~~~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~ 153 (251)
+..+++++|+... .++.- ..+.++ ..++ +|+.. ...++|+|... ....++.+++|...
T Consensus 43 l~~~v~~lk~~~K--~v~Vh~Dli~Gls~d---~~ai------~fL~~------~~~pdGIIsTk-~~~i~~Ak~~gL~t 104 (192)
T 3kts_A 43 LKALVKYAQAGGK--KVLLHADLVNGLKND---DYAI------DFLCT------EICPDGIISTR-GNAIMKAKQHKMLA 104 (192)
T ss_dssp HHHHHHHHHHTTC--EEEEEGGGEETCCCS---HHHH------HHHHH------TTCCSEEEESC-HHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHcCC--eEEEecCchhccCCc---HHHH------HHHHh------CCCCCEEEeCc-HHHHHHHHHCCCeE
Confidence 6778889998755 34431 111111 2333 56552 35688888776 45567777888754
Q ss_pred chhhhhhHhhccCCCCCCcccHHHHHHHhhhccccEEEecCCCCCCCCCHHHHHHHHhcCCCCEEEecCC-ChHhHHHhh
Q psy9039 154 VLVFTDIKKKHSSHAITADVDITETAKAASFFLSDGLIITGNATGDPADVSQLMSVKNAVDLPILIGSGV-TSDNVEHYM 232 (251)
Q Consensus 154 i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~~~~~D~v~VTG~~~g~~~~~~~l~~vr~~~~~PV~vG~GI-~~~~v~~~~ 232 (251)
|+=+. ..+...++...+..+...+|++-+- .|. -.+.++++++.+++||++||+| +.+++.+++
T Consensus 105 IqR~F----------liDS~al~~~~~~i~~~~PD~iEiL---PGi--~p~iI~~i~~~~~~PiIaGGlI~~~edv~~al 169 (192)
T 3kts_A 105 IQRLF----------MIDSSAYNKGVALIQKVQPDCIELL---PGI--IPEQVQKMTQKLHIPVIAGGLIETSEQVNQVI 169 (192)
T ss_dssp EEEEE----------CCSHHHHHHHHHHHHHHCCSEEEEE---CTT--CHHHHHHHHHHHCCCEEEESSCCSHHHHHHHH
T ss_pred EEEEE----------EEEcchHHHHHHHHhhcCCCEEEEC---Cch--hHHHHHHHHHhcCCCEEEECCcCCHHHHHHHH
Confidence 43321 1222333333344444467887443 122 2478999999999999999999 689999999
Q ss_pred c--CCEEEEeceEeecC
Q psy9039 233 T--ADALIIGSHFKQGG 247 (251)
Q Consensus 233 ~--ADGvIVGS~~~~~g 247 (251)
+ ||++..|+.-.=+|
T Consensus 170 ~aGA~aVsTs~~~LW~~ 186 (192)
T 3kts_A 170 ASGAIAVTTSNKHLWEG 186 (192)
T ss_dssp TTTEEEEEECCGGGGTT
T ss_pred HcCCeEEEeCCHHHhCc
Confidence 6 99999998765444
|
| >1ypf_A GMP reductase; GUAC, purines, pyrimidines, nucleosides, nucleotides, nucleo nucleoside interconversions, spine, structural genomics; 1.80A {Bacillus anthracis} PDB: 2a1y_A* | Back alignment and structure |
|---|
Probab=97.62 E-value=7.8e-05 Score=67.44 Aligned_cols=69 Identities=23% Similarity=0.310 Sum_probs=54.9
Q ss_pred HHHHHHhhhccccEEEecCCC---------CCC-CC--CHHHHHHHHhcCCCCEEEecCC-ChHhHHHhhc--CCEEEEe
Q psy9039 176 TETAKAASFFLSDGLIITGNA---------TGD-PA--DVSQLMSVKNAVDLPILIGSGV-TSDNVEHYMT--ADALIIG 240 (251)
Q Consensus 176 ~~~a~~a~~~~~D~v~VTG~~---------~g~-~~--~~~~l~~vr~~~~~PV~vG~GI-~~~~v~~~~~--ADGvIVG 240 (251)
.+.|+.+...|+|++++++.. .+. .+ ..+.+.++++.+++||++.||| +++++.+++. ||+|.+|
T Consensus 160 ~e~A~~a~~aGad~Ivvs~hgG~~~~~~~~~~~g~~g~~~~~l~~v~~~~~ipVIa~GGI~~g~Dv~kalalGAdaV~iG 239 (336)
T 1ypf_A 160 PEAVRELENAGADATKVGIGPGKVCITKIKTGFGTGGWQLAALRWCAKAASKPIIADGGIRTNGDVAKSIRFGATMVMIG 239 (336)
T ss_dssp HHHHHHHHHHTCSEEEECSSCSTTCHHHHHHSCSSTTCHHHHHHHHHHTCSSCEEEESCCCSTHHHHHHHHTTCSEEEES
T ss_pred HHHHHHHHHcCCCEEEEecCCCceeecccccCcCCchhHHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHcCCCEEEeC
Confidence 456777777899999995431 011 12 3677889999889999999999 7899998886 9999999
Q ss_pred ceEe
Q psy9039 241 SHFK 244 (251)
Q Consensus 241 S~~~ 244 (251)
+.|.
T Consensus 240 r~~l 243 (336)
T 1ypf_A 240 SLFA 243 (336)
T ss_dssp GGGT
T ss_pred hhhh
Confidence 9998
|
| >2nli_A Lactate oxidase; flavoenzyme, FMN, D-lactate, oxidoreducta; HET: FMN; 1.59A {Aerococcus viridans} PDB: 2zfa_A* 2du2_A* 2e77_A* 2j6x_A* | Back alignment and structure |
|---|
Probab=97.61 E-value=5.8e-05 Score=69.30 Aligned_cols=70 Identities=23% Similarity=0.367 Sum_probs=55.6
Q ss_pred HHHHHHhhhccccEEEecCC--CC--CCCCCHHHHHHHHhcC--CCCEEEecCC-ChHhHHHhhc--CCEEEEeceEee
Q psy9039 176 TETAKAASFFLSDGLIITGN--AT--GDPADVSQLMSVKNAV--DLPILIGSGV-TSDNVEHYMT--ADALIIGSHFKQ 245 (251)
Q Consensus 176 ~~~a~~a~~~~~D~v~VTG~--~~--g~~~~~~~l~~vr~~~--~~PV~vG~GI-~~~~v~~~~~--ADGvIVGS~~~~ 245 (251)
.+.++.+...|+|++.|+|. +. +..+.++.+.++++.+ ++||++.||| +++++.+++. ||+|.+|+.|..
T Consensus 240 ~e~a~~a~~~Gad~I~vs~~ggr~~~~g~~~~~~l~~v~~~v~~~ipVia~GGI~~g~D~~kalalGAd~V~iGr~~l~ 318 (368)
T 2nli_A 240 PEDADMAIKRGASGIWVSNHGARQLYEAPGSFDTLPAIAERVNKRVPIVFDSGVRRGEHVAKALASGADVVALGRPVLF 318 (368)
T ss_dssp HHHHHHHHHTTCSEEEECCGGGTSCSSCCCHHHHHHHHHHHHTTSSCEEECSSCCSHHHHHHHHHTTCSEEEECHHHHH
T ss_pred HHHHHHHHHcCCCEEEEcCCCcCCCCCCCChHHHHHHHHHHhCCCCeEEEECCCCCHHHHHHHHHcCCCEEEECHHHHH
Confidence 45567777789999999763 21 2234568888998877 6999999999 7999998886 999999998754
|
| >1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1 | Back alignment and structure |
|---|
Probab=97.60 E-value=7.6e-05 Score=63.99 Aligned_cols=73 Identities=21% Similarity=0.263 Sum_probs=56.8
Q ss_pred cHHHHHHHhhhccccEEEecCCCCCCC---CCHHHHHHHHhcCCCCEEEecCC-ChHhHHHhhc--CCEEEEeceEeec
Q psy9039 174 DITETAKAASFFLSDGLIITGNATGDP---ADVSQLMSVKNAVDLPILIGSGV-TSDNVEHYMT--ADALIIGSHFKQG 246 (251)
Q Consensus 174 ~i~~~a~~a~~~~~D~v~VTG~~~g~~---~~~~~l~~vr~~~~~PV~vG~GI-~~~~v~~~~~--ADGvIVGS~~~~~ 246 (251)
...++++.....|+|.+.++....... ...+.++++++.+++||++++|| +++++.+++. ||++++|+.+..+
T Consensus 32 d~~~~a~~~~~~Gad~i~v~d~~~~~~~~~~~~~~i~~i~~~~~iPvi~~Ggi~~~~~~~~~~~~Gad~V~lg~~~l~~ 110 (252)
T 1ka9_F 32 DPVEAARAYDEAGADELVFLDISATHEERAILLDVVARVAERVFIPLTVGGGVRSLEDARKLLLSGADKVSVNSAAVRR 110 (252)
T ss_dssp CHHHHHHHHHHHTCSCEEEEECCSSTTCHHHHHHHHHHHHTTCCSCEEEESSCCSHHHHHHHHHHTCSEEEECHHHHHC
T ss_pred CHHHHHHHHHHcCCCEEEEEcCCccccCccccHHHHHHHHHhCCCCEEEECCcCCHHHHHHHHHcCCCEEEEChHHHhC
Confidence 455666666667999998886543222 23467889999999999999999 5899999986 9999999987654
|
| >1gox_A (S)-2-hydroxy-acid oxidase, peroxisomal; oxidoreductase (oxygen(A)); HET: FMN; 2.00A {Spinacia oleracea} SCOP: c.1.4.1 PDB: 1gyl_A* 1al8_A* 1al7_A* 2cdh_0 | Back alignment and structure |
|---|
Probab=97.59 E-value=8.6e-05 Score=68.08 Aligned_cols=90 Identities=21% Similarity=0.265 Sum_probs=62.9
Q ss_pred hhhhhHhhccCCCCCCcccHHHHHHHhhhccccEEEecCC--C--CCCCCCHHHHHHHHhcC--CCCEEEecCC-ChHhH
Q psy9039 156 VFTDIKKKHSSHAITADVDITETAKAASFFLSDGLIITGN--A--TGDPADVSQLMSVKNAV--DLPILIGSGV-TSDNV 228 (251)
Q Consensus 156 i~a~v~~k~~~~~~~~~~~i~~~a~~a~~~~~D~v~VTG~--~--~g~~~~~~~l~~vr~~~--~~PV~vG~GI-~~~~v 228 (251)
.+..+....+.|+........+.++.+...|+|++.|++. + .+..+..+.+.++++.+ ++||++-||| +++++
T Consensus 216 ~i~~l~~~~~~pv~vK~~~~~e~a~~a~~~Gad~I~vs~~ggr~~~~~~~~~~~l~~v~~~~~~~ipvia~GGI~~~~D~ 295 (370)
T 1gox_A 216 DVAWLQTITSLPILVKGVITAEDARLAVQHGAAGIIVSNHGARQLDYVPATIMALEEVVKAAQGRIPVFLDGGVRRGTDV 295 (370)
T ss_dssp HHHHHHHHCCSCEEEECCCSHHHHHHHHHTTCSEEEECCGGGTSSTTCCCHHHHHHHHHHHTTTSSCEEEESSCCSHHHH
T ss_pred HHHHHHHHhCCCEEEEecCCHHHHHHHHHcCCCEEEECCCCCccCCCcccHHHHHHHHHHHhCCCCEEEEECCCCCHHHH
Confidence 3444444444554211122345567777789999999653 2 12234567888898877 7999999999 78999
Q ss_pred HHhhc--CCEEEEeceEee
Q psy9039 229 EHYMT--ADALIIGSHFKQ 245 (251)
Q Consensus 229 ~~~~~--ADGvIVGS~~~~ 245 (251)
.+++. ||+|.+|+.|..
T Consensus 296 ~k~l~~GAdaV~iGr~~l~ 314 (370)
T 1gox_A 296 FKALALGAAGVFIGRPVVF 314 (370)
T ss_dssp HHHHHHTCSEEEECHHHHH
T ss_pred HHHHHcCCCEEeecHHHHH
Confidence 99986 999999998864
|
| >3aty_A Tcoye, prostaglandin F2A synthase; alpha/beta barrel, oxidoreductase, flavin mononucleotide; HET: FMN; 1.70A {Trypanosoma cruzi} PDB: 3atz_A* | Back alignment and structure |
|---|
Probab=97.58 E-value=0.00047 Score=63.46 Aligned_cols=71 Identities=10% Similarity=0.022 Sum_probs=53.6
Q ss_pred HHHHHHhhhccccEEEecCCCCCCC-CCHHHHHHHHhcCCCCEEEecCCChHhHHHhhc---CCEEEEeceEeecC
Q psy9039 176 TETAKAASFFLSDGLIITGNATGDP-ADVSQLMSVKNAVDLPILIGSGVTSDNVEHYMT---ADALIIGSHFKQGG 247 (251)
Q Consensus 176 ~~~a~~a~~~~~D~v~VTG~~~g~~-~~~~~l~~vr~~~~~PV~vG~GI~~~~v~~~~~---ADGvIVGS~~~~~g 247 (251)
.++++..+.+|+|.+-+++.....+ ...+ ++++|+.+++||++++||+++++.+++. ||+|.+|..|+.|-
T Consensus 269 ~~la~~l~~~Gvd~i~v~~~~~~~~~~~~~-~~~ir~~~~iPvi~~G~it~~~a~~~l~~g~aD~V~igR~~l~~P 343 (379)
T 3aty_A 269 KHLCKKIEPLSLAYLHYLRGDMVNQQIGDV-VAWVRGSYSGVKISNLRYDFEEADQQIREGKVDAVAFGAKFIANP 343 (379)
T ss_dssp HHHHHHHGGGCCSEEEEECSCTTSCCCCCH-HHHHHTTCCSCEEEESSCCHHHHHHHHHTTSCSEEEESHHHHHCT
T ss_pred HHHHHHHHHhCCCEEEEcCCCcCCCCccHH-HHHHHHHCCCcEEEECCCCHHHHHHHHHcCCCeEEEecHHHHhCc
Confidence 3445555556899998876421101 1126 8899999999999999999999999984 99999999988764
|
| >1p4c_A L(+)-mandelate dehydrogenase; TIM barrel, hydroxy acid oxidizing enzyme, oxidoreductase; HET: FMN MES; 1.35A {Pseudomonas putida} SCOP: c.1.4.1 PDB: 1huv_A* 1p5b_A* 3giy_A* 2a7p_A* 2a85_A* 2a7n_A* | Back alignment and structure |
|---|
Probab=97.58 E-value=3.6e-05 Score=70.94 Aligned_cols=72 Identities=19% Similarity=0.253 Sum_probs=56.6
Q ss_pred cHHHHHHHhhhccccEEEecCC--CC--CCCCCHHHHHHHHhcCCCCEEEecCC-ChHhHHHhhc--CCEEEEeceEee
Q psy9039 174 DITETAKAASFFLSDGLIITGN--AT--GDPADVSQLMSVKNAVDLPILIGSGV-TSDNVEHYMT--ADALIIGSHFKQ 245 (251)
Q Consensus 174 ~i~~~a~~a~~~~~D~v~VTG~--~~--g~~~~~~~l~~vr~~~~~PV~vG~GI-~~~~v~~~~~--ADGvIVGS~~~~ 245 (251)
...+.++.+...|+|++.|+|. +. +..++++.+.++++.++.||++-||| +++++.+++. ||+|.+|+.|..
T Consensus 234 ~t~e~a~~a~~aGad~I~vs~~gg~~~d~~~~~~~~l~~v~~~~~~pVia~GGI~~~~dv~kal~~GAdaV~iGr~~l~ 312 (380)
T 1p4c_A 234 LSAEDADRCIAEGADGVILSNHGGRQLDCAISPMEVLAQSVAKTGKPVLIDSGFRRGSDIVKALALGAEAVLLGRATLY 312 (380)
T ss_dssp CCHHHHHHHHHTTCSEEEECCGGGTSCTTCCCGGGTHHHHHHHHCSCEEECSSCCSHHHHHHHHHTTCSCEEESHHHHH
T ss_pred CcHHHHHHHHHcCCCEEEEcCCCCCcCCCCcCHHHHHHHHHHHcCCeEEEECCCCCHHHHHHHHHhCCcHhhehHHHHH
Confidence 3355667777789999999653 21 23345678889998888899999999 7899999886 999999998753
|
| >3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A* | Back alignment and structure |
|---|
Probab=97.54 E-value=5e-05 Score=72.58 Aligned_cols=68 Identities=18% Similarity=0.335 Sum_probs=49.4
Q ss_pred HHHHHHhhhccccEEEecCCCCCC-----------CCCHHHHHHHHh---cCCCCEEEecCC-ChHhHHHhhc--CCEEE
Q psy9039 176 TETAKAASFFLSDGLIITGNATGD-----------PADVSQLMSVKN---AVDLPILIGSGV-TSDNVEHYMT--ADALI 238 (251)
Q Consensus 176 ~~~a~~a~~~~~D~v~VTG~~~g~-----------~~~~~~l~~vr~---~~~~PV~vG~GI-~~~~v~~~~~--ADGvI 238 (251)
.+.++.+...|+|++.| |...|. .+....+.++++ ..++||++.||| +++++.+++. ||+|+
T Consensus 308 ~e~a~~~~~aGad~i~v-g~g~gsi~~~~~~~g~g~p~~~~l~~v~~~~~~~~iPVIa~GGI~~~~di~kala~GA~~V~ 386 (511)
T 3usb_A 308 AEATKALIEAGANVVKV-GIGPGSICTTRVVAGVGVPQLTAVYDCATEARKHGIPVIADGGIKYSGDMVKALAAGAHVVM 386 (511)
T ss_dssp HHHHHHHHHHTCSEEEE-CSSCSTTCCHHHHHCCCCCHHHHHHHHHHHHHTTTCCEEEESCCCSHHHHHHHHHTTCSEEE
T ss_pred HHHHHHHHHhCCCEEEE-CCCCccccccccccCCCCCcHHHHHHHHHHHHhCCCcEEEeCCCCCHHHHHHHHHhCchhhe
Confidence 45566666679999988 332222 334555555543 347999999999 7999998886 99999
Q ss_pred EeceEe
Q psy9039 239 IGSHFK 244 (251)
Q Consensus 239 VGS~~~ 244 (251)
+||+|.
T Consensus 387 vGs~~~ 392 (511)
T 3usb_A 387 LGSMFA 392 (511)
T ss_dssp ESTTTT
T ss_pred ecHHHh
Confidence 999973
|
| >3cwo_X Beta/alpha-barrel protein based on 1THF and 1TMY; XRAY, CHEY, HISF, half barrel, de novo protein; 3.10A {Thermotoga maritima} PDB: 2lle_A | Back alignment and structure |
|---|
Probab=97.52 E-value=0.00019 Score=59.56 Aligned_cols=73 Identities=18% Similarity=0.196 Sum_probs=54.1
Q ss_pred cHHHHHHHhhhccccEEEecCC-CCCCC--CCHHHHHHHHhcCCCCEEEecCC-ChHhHHHhhc--CCEEEEeceEeec
Q psy9039 174 DITETAKAASFFLSDGLIITGN-ATGDP--ADVSQLMSVKNAVDLPILIGSGV-TSDNVEHYMT--ADALIIGSHFKQG 246 (251)
Q Consensus 174 ~i~~~a~~a~~~~~D~v~VTG~-~~g~~--~~~~~l~~vr~~~~~PV~vG~GI-~~~~v~~~~~--ADGvIVGS~~~~~ 246 (251)
++.+..+.....++..+.+||. ++|.. ...+.++++++..++|+++.+|+ +++++.+.+. |||+++||+|..+
T Consensus 131 ~~~~~i~~~~~~~~~~vli~~~~~~g~~~g~~~~~i~~~~~~~~~Pvia~~g~~~~~~~~~~~~~G~~~~~vg~a~~~~ 209 (237)
T 3cwo_X 131 LLRDWVVEVEKRGAGEILLTSIDRDGTKSGYDTEMIRFVRPLTTLPIIASGGAGKMEHFLEAFLAGADAALAASVFHFR 209 (237)
T ss_dssp EHHHHHHHHHHHTCSEEEEEETTTTTCCSCCCHHHHHHHGGGCCSCEEEESCCCSHHHHHHHHHHTCSEEEESHHHHTT
T ss_pred CHHHHHHHHhhcCCCeEEEEecCCCCccccccHHHHHHHHHhcCCCEEecCCCCCHHHHHHHHHcCcHHHhhhHHHHcC
Confidence 4555555544456766667763 34432 23678999999999999999999 5899999886 9999999998543
|
| >2yzr_A Pyridoxal biosynthesis lyase PDXS; redox protein, pyridoxal phosphate, structural genomi NPPSFA; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=97.50 E-value=0.00036 Score=62.89 Aligned_cols=44 Identities=27% Similarity=0.460 Sum_probs=39.0
Q ss_pred HHHHHHHhcCCCCE--EEecCC-ChHhHHHhhc--CCEEEEeceEeecC
Q psy9039 204 SQLMSVKNAVDLPI--LIGSGV-TSDNVEHYMT--ADALIIGSHFKQGG 247 (251)
Q Consensus 204 ~~l~~vr~~~~~PV--~vG~GI-~~~~v~~~~~--ADGvIVGS~~~~~g 247 (251)
++++++++..++|| +.-||| |++++.++++ |||+.|||+|.+.+
T Consensus 230 ell~~i~~~~~IPVV~VAeGGI~Tpeda~~~l~~GaDgV~VGsaI~~a~ 278 (330)
T 2yzr_A 230 EVLLEVKKLGRLPVVNFAAGGVATPADAALMMQLGSDGVFVGSGIFKSE 278 (330)
T ss_dssp HHHHHHHHHTSCSSEEEECSCCCSHHHHHHHHHTTCSCEEESHHHHTSS
T ss_pred HHHHHHHHhCCCCeEEEEECCCCCHHHHHHHHHcCcCEEeeHHHHhcCC
Confidence 78889999889999 589999 7999999996 99999999997544
|
| >1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A* | Back alignment and structure |
|---|
Probab=97.50 E-value=0.00038 Score=68.91 Aligned_cols=46 Identities=15% Similarity=0.088 Sum_probs=40.3
Q ss_pred CHHHHHHHHhcCCCCEEEecCC-ChHhHHHhhc---CCEEEEeceEeecC
Q psy9039 202 DVSQLMSVKNAVDLPILIGSGV-TSDNVEHYMT---ADALIIGSHFKQGG 247 (251)
Q Consensus 202 ~~~~l~~vr~~~~~PV~vG~GI-~~~~v~~~~~---ADGvIVGS~~~~~g 247 (251)
..+.++++|+.+++||+..||| +++.+.+++. ||+|.+|..|+.|-
T Consensus 279 ~~~~~~~i~~~~~~pvi~~G~i~~~~~a~~~l~~g~aD~V~~gR~~l~~P 328 (729)
T 1o94_A 279 TIPWVKLVKQVSKKPVLGVGRYTDPEKMIEIVTKGYADIIGCARPSIADP 328 (729)
T ss_dssp THHHHHHHHTTCSSCEECCSCCCCHHHHHHHHHTTSCSBEEESHHHHHCT
T ss_pred cHHHHHHHHHHCCCEEEEeCCCCCHHHHHHHHHCCCCCEEEeCchhhcCc
Confidence 3577889999999999999999 6999999984 99999999887664
|
| >1vcf_A Isopentenyl-diphosphate delta-isomerase; TIM barrel, structural genomics, riken structural genomics/P initiative, RSGI; HET: FMN; 2.60A {Thermus thermophilus} SCOP: c.1.4.1 PDB: 1vcg_A* 3dh7_A* | Back alignment and structure |
|---|
Probab=97.50 E-value=0.00016 Score=65.17 Aligned_cols=69 Identities=19% Similarity=0.279 Sum_probs=54.2
Q ss_pred HHHHHhhhccccEEEecCC-----------CC-----------CCCCCHHHHHHHHhcC-CCCEEEecCC-ChHhHHHhh
Q psy9039 177 ETAKAASFFLSDGLIITGN-----------AT-----------GDPADVSQLMSVKNAV-DLPILIGSGV-TSDNVEHYM 232 (251)
Q Consensus 177 ~~a~~a~~~~~D~v~VTG~-----------~~-----------g~~~~~~~l~~vr~~~-~~PV~vG~GI-~~~~v~~~~ 232 (251)
+.++.+...|+|++.|+|. +. +..+..+.+.++++.+ ++||++.||| +++++.+++
T Consensus 196 e~a~~~~~~G~d~I~vs~~ggt~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~v~~~~~~ipvia~GGI~~~~d~~kal 275 (332)
T 1vcf_A 196 EAALALRDLPLAAVDVAGAGGTSWARVEEWVRFGEVRHPELCEIGIPTARAILEVREVLPHLPLVASGGVYTGTDGAKAL 275 (332)
T ss_dssp HHHHHHTTSCCSEEECCCBTSCCHHHHHHTC--------CCTTCSCBHHHHHHHHHHHCSSSCEEEESSCCSHHHHHHHH
T ss_pred HHHHHHHHcCCCEEEeCCCCCCcchhHHHhhccccchhhhHhhccccHHHHHHHHHHhcCCCeEEEECCCCCHHHHHHHH
Confidence 3466666789999999764 21 1123457788898888 8999999999 799999888
Q ss_pred c--CCEEEEeceEee
Q psy9039 233 T--ADALIIGSHFKQ 245 (251)
Q Consensus 233 ~--ADGvIVGS~~~~ 245 (251)
. ||+|.+|+.|..
T Consensus 276 ~~GAd~V~igr~~l~ 290 (332)
T 1vcf_A 276 ALGADLLAVARPLLR 290 (332)
T ss_dssp HHTCSEEEECGGGHH
T ss_pred HhCCChHhhhHHHHH
Confidence 6 999999999873
|
| >1vhn_A Putative flavin oxidoreducatase; structural genomics, unknown function; HET: FMN; 1.59A {Thermotoga maritima} SCOP: c.1.4.1 | Back alignment and structure |
|---|
Probab=97.46 E-value=8.4e-05 Score=66.60 Aligned_cols=69 Identities=13% Similarity=0.189 Sum_probs=55.3
Q ss_pred HHHHHHhhhccccEEEecCCCCCC----CCCHHHHHHHHhcCCCCEEEecCC-ChHhHHHhhc---CCEEEEeceEeec
Q psy9039 176 TETAKAASFFLSDGLIITGNATGD----PADVSQLMSVKNAVDLPILIGSGV-TSDNVEHYMT---ADALIIGSHFKQG 246 (251)
Q Consensus 176 ~~~a~~a~~~~~D~v~VTG~~~g~----~~~~~~l~~vr~~~~~PV~vG~GI-~~~~v~~~~~---ADGvIVGS~~~~~ 246 (251)
.+.++.++..|+|++.|+|..... ..+.+.++++++ ++||++.||| |++++.+++. ||+|.+|+++..|
T Consensus 143 ~~~a~~l~~~G~d~i~v~g~~~~~~~~~~~~~~~i~~i~~--~ipVi~~GgI~s~~da~~~l~~~gad~V~iGR~~l~~ 219 (318)
T 1vhn_A 143 EEIYRILVEEGVDEVFIHTRTVVQSFTGRAEWKALSVLEK--RIPTFVSGDIFTPEDAKRALEESGCDGLLVARGAIGR 219 (318)
T ss_dssp HHHHHHHHHTTCCEEEEESSCTTTTTSSCCCGGGGGGSCC--SSCEEEESSCCSHHHHHHHHHHHCCSEEEESGGGTTC
T ss_pred HHHHHHHHHhCCCEEEEcCCCccccCCCCcCHHHHHHHHc--CCeEEEECCcCCHHHHHHHHHcCCCCEEEECHHHHhC
Confidence 366777777899999999864321 235677888888 8999999999 7999998884 9999999998764
|
| >1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A* | Back alignment and structure |
|---|
Probab=97.43 E-value=6.2e-05 Score=71.72 Aligned_cols=70 Identities=23% Similarity=0.329 Sum_probs=53.1
Q ss_pred HHHHHHhhhccccEEEecCCCCC------------CCC--CHHHHHHHHhcCCCCEEEecCC-ChHhHHHhhc--CCEEE
Q psy9039 176 TETAKAASFFLSDGLIITGNATG------------DPA--DVSQLMSVKNAVDLPILIGSGV-TSDNVEHYMT--ADALI 238 (251)
Q Consensus 176 ~~~a~~a~~~~~D~v~VTG~~~g------------~~~--~~~~l~~vr~~~~~PV~vG~GI-~~~~v~~~~~--ADGvI 238 (251)
.+.++.+...|+|++.|+ .+.| .+. .+..+.++++..++||++.||| +++++.+++. ||+|.
T Consensus 307 ~~~a~~l~~aGad~I~vg-~~~G~~~~t~~~~~~g~~~~~~~~~~~~~~~~~~ipVia~GGI~~~~di~kala~GAd~V~ 385 (514)
T 1jcn_A 307 AAQAKNLIDAGVDGLRVG-MGCGSICITQEVMACGRPQGTAVYKVAEYARRFGVPIIADGGIQTVGHVVKALALGASTVM 385 (514)
T ss_dssp HHHHHHHHHHTCSEEEEC-SSCSCCBTTBCCCSCCCCHHHHHHHHHHHHGGGTCCEEEESCCCSHHHHHHHHHTTCSEEE
T ss_pred HHHHHHHHHcCCCEEEEC-CCCCcccccccccCCCccchhHHHHHHHHHhhCCCCEEEECCCCCHHHHHHHHHcCCCeee
Confidence 445666767799999883 2222 111 2466788888889999999999 6899999886 99999
Q ss_pred EeceEeec
Q psy9039 239 IGSHFKQG 246 (251)
Q Consensus 239 VGS~~~~~ 246 (251)
+||.|..+
T Consensus 386 iG~~~l~~ 393 (514)
T 1jcn_A 386 MGSLLAAT 393 (514)
T ss_dssp ESTTTTTS
T ss_pred ECHHHHcC
Confidence 99988653
|
| >1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A | Back alignment and structure |
|---|
Probab=97.42 E-value=8.2e-05 Score=63.85 Aligned_cols=73 Identities=19% Similarity=0.250 Sum_probs=55.6
Q ss_pred cHHHHHHHhhhccccEEEecCCCCCC---CCCHHHHHHHHhcCCCCEEEecCC-ChHhHHHhhc--CCEEEEeceEeec
Q psy9039 174 DITETAKAASFFLSDGLIITGNATGD---PADVSQLMSVKNAVDLPILIGSGV-TSDNVEHYMT--ADALIIGSHFKQG 246 (251)
Q Consensus 174 ~i~~~a~~a~~~~~D~v~VTG~~~g~---~~~~~~l~~vr~~~~~PV~vG~GI-~~~~v~~~~~--ADGvIVGS~~~~~ 246 (251)
...++++..+..|+|.+-++...... ....+.++++++.+++|+++++|| +++++.+++. ||++++|+....+
T Consensus 31 d~~~~a~~~~~~Gad~i~v~d~~~~~~~~~~~~~~i~~i~~~~~ipvi~~ggI~~~~~~~~~~~~Gad~V~lg~~~l~~ 109 (253)
T 1thf_D 31 DPVELGKFYSEIGIDELVFLDITASVEKRKTMLELVEKVAEQIDIPFTVGGGIHDFETASELILRGADKVSINTAAVEN 109 (253)
T ss_dssp CHHHHHHHHHHTTCCEEEEEESSCSSSHHHHHHHHHHHHHTTCCSCEEEESSCCSHHHHHHHHHTTCSEEEESHHHHHC
T ss_pred CHHHHHHHHHHcCCCEEEEECCchhhcCCcccHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCCEEEEChHHHhC
Confidence 44566666666799999887543221 123567888999899999999999 6899999886 9999999987554
|
| >1qo2_A Molecule: N-((5-phosphoribosyl)-formimino)-5-aminoimidazol- 4-carboxamid ribonucleotid...; isomerase, histidine biosynthesis; 1.85A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2cff_A 2w79_A | Back alignment and structure |
|---|
Probab=97.38 E-value=9.1e-05 Score=63.38 Aligned_cols=72 Identities=15% Similarity=0.101 Sum_probs=56.1
Q ss_pred cHHHHHHHhhhccccEEEecCCCC---CCCCCHHHHHHHHhcCCCCEEEecCC-ChHhHHHhhc--CCEEEEeceEeec
Q psy9039 174 DITETAKAASFFLSDGLIITGNAT---GDPADVSQLMSVKNAVDLPILIGSGV-TSDNVEHYMT--ADALIIGSHFKQG 246 (251)
Q Consensus 174 ~i~~~a~~a~~~~~D~v~VTG~~~---g~~~~~~~l~~vr~~~~~PV~vG~GI-~~~~v~~~~~--ADGvIVGS~~~~~ 246 (251)
...++++.....|+|.+.+|.... +.....+.+++++ .+++||+++||| +++++.+++. ||++++|+.+..+
T Consensus 31 ~~~~~a~~~~~~Gad~i~v~d~~~~~~~~~~~~~~i~~i~-~~~ipvi~~Ggi~~~~~~~~~~~~Gad~V~lg~~~l~~ 108 (241)
T 1qo2_A 31 DPVELVEKLIEEGFTLIHVVDLSNAIENSGENLPVLEKLS-EFAEHIQIGGGIRSLDYAEKLRKLGYRRQIVSSKVLED 108 (241)
T ss_dssp CHHHHHHHHHHTTCCCEEEEEHHHHHHCCCTTHHHHHHGG-GGGGGEEEESSCCSHHHHHHHHHTTCCEEEECHHHHHC
T ss_pred CHHHHHHHHHHcCCCEEEEecccccccCCchhHHHHHHHH-hcCCcEEEECCCCCHHHHHHHHHCCCCEEEECchHhhC
Confidence 345566666667999998886321 2344678888888 789999999999 6899999886 9999999987654
|
| >3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.94A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=97.37 E-value=0.00017 Score=66.11 Aligned_cols=68 Identities=18% Similarity=0.173 Sum_probs=50.4
Q ss_pred HHHHHHhhhccccEEEecCCCCCC-----------CCCHHHHHHHHhcCCCCEEEecCC-ChHhHHHhhc--CCEEEEec
Q psy9039 176 TETAKAASFFLSDGLIITGNATGD-----------PADVSQLMSVKNAVDLPILIGSGV-TSDNVEHYMT--ADALIIGS 241 (251)
Q Consensus 176 ~~~a~~a~~~~~D~v~VTG~~~g~-----------~~~~~~l~~vr~~~~~PV~vG~GI-~~~~v~~~~~--ADGvIVGS 241 (251)
.+.++.+...|+|++.|+.. .|. .+.++.|.++++... ||++-||| ++.++.+++. ||+|.+||
T Consensus 152 ~e~A~~a~~aGaD~I~Vg~g-~G~~~~tr~~~g~g~p~l~aI~~~~~~~~-PVIAdGGI~~~~di~kALa~GAd~V~iGr 229 (361)
T 3r2g_A 152 YAGADYLASCGADIIKAGIG-GGSVCSTRIKTGFGVPMLTCIQDCSRADR-SIVADGGIKTSGDIVKALAFGADFVMIGG 229 (361)
T ss_dssp HHHHHHHHHTTCSEEEECCS-SSSCHHHHHHHCCCCCHHHHHHHHTTSSS-EEEEESCCCSHHHHHHHHHTTCSEEEESG
T ss_pred HHHHHHHHHcCCCEEEEcCC-CCcCccccccCCccHHHHHHHHHHHHhCC-CEEEECCCCCHHHHHHHHHcCCCEEEECh
Confidence 34566777789999999522 221 223466666666555 99999999 6999999886 99999999
Q ss_pred eEee
Q psy9039 242 HFKQ 245 (251)
Q Consensus 242 ~~~~ 245 (251)
.|..
T Consensus 230 ~f~~ 233 (361)
T 3r2g_A 230 MLAG 233 (361)
T ss_dssp GGTT
T ss_pred HHhC
Confidence 9864
|
| >2nzl_A Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, GOX, GOX1, structural genomics, structural genom consortium, SGC, oxidoreductase; HET: FMN; 1.35A {Homo sapiens} PDB: 2rdu_A* 2rdt_A* 2rdw_A* 2w0u_A* | Back alignment and structure |
|---|
Probab=97.35 E-value=0.00013 Score=67.58 Aligned_cols=70 Identities=21% Similarity=0.393 Sum_probs=54.9
Q ss_pred HHHHHHhhhccccEEEecCC--CC--CCCCCHHHHHHHHhcC--CCCEEEecCC-ChHhHHHhhc--CCEEEEeceEee
Q psy9039 176 TETAKAASFFLSDGLIITGN--AT--GDPADVSQLMSVKNAV--DLPILIGSGV-TSDNVEHYMT--ADALIIGSHFKQ 245 (251)
Q Consensus 176 ~~~a~~a~~~~~D~v~VTG~--~~--g~~~~~~~l~~vr~~~--~~PV~vG~GI-~~~~v~~~~~--ADGvIVGS~~~~ 245 (251)
.+.++.+...|+|++.|+|. +. +..+..+.+.++++.+ ++||++.||| +++++.+++. ||+|.+|+.|..
T Consensus 263 ~e~A~~a~~aGad~I~vs~~ggr~~~~g~~~~~~l~~v~~av~~~ipVia~GGI~~g~Dv~kalalGAd~V~iGr~~l~ 341 (392)
T 2nzl_A 263 GDDAREAVKHGLNGILVSNHGARQLDGVPATIDVLPEIVEAVEGKVEVFLDGGVRKGTDVLKALALGAKAVFVGRPIVW 341 (392)
T ss_dssp HHHHHHHHHTTCCEEEECCGGGTSSTTCCCHHHHHHHHHHHHTTSSEEEECSSCCSHHHHHHHHHTTCSEEEECHHHHH
T ss_pred HHHHHHHHHcCCCEEEeCCCCCCcCCCCcChHHHHHHHHHHcCCCCEEEEECCCCCHHHHHHHHHhCCCeeEECHHHHH
Confidence 45567777789999999763 11 2234567888888876 5999999999 7999998886 999999998754
|
| >2c6q_A GMP reductase 2; TIM barrel, metal-binding, NADP, oxidoreductase, potassium; HET: IMP NDP; 1.70A {Homo sapiens} PDB: 2bzn_A* 2a7r_A* 2ble_A* 2bwg_A* | Back alignment and structure |
|---|
Probab=97.35 E-value=0.00017 Score=65.69 Aligned_cols=69 Identities=14% Similarity=0.184 Sum_probs=49.8
Q ss_pred HHHHHHhhhccccEEEecCCCCC----------CCCCHHHHHHHHh---cCCCCEEEecCC-ChHhHHHhhc--CCEEEE
Q psy9039 176 TETAKAASFFLSDGLIITGNATG----------DPADVSQLMSVKN---AVDLPILIGSGV-TSDNVEHYMT--ADALII 239 (251)
Q Consensus 176 ~~~a~~a~~~~~D~v~VTG~~~g----------~~~~~~~l~~vr~---~~~~PV~vG~GI-~~~~v~~~~~--ADGvIV 239 (251)
.+.|+.+...|+|++.|+..... ..+....+.++.+ ..++||++.||| ++.++.+++. ||+|.+
T Consensus 172 ~e~A~~a~~aGaD~I~v~~g~G~~~~~r~~~g~~~p~~~~l~~v~~~~~~~~ipvIa~GGI~~g~di~kAlalGA~~V~v 251 (351)
T 2c6q_A 172 GEMVEELILSGADIIKVGIGPGSVCTTRKKTGVGYPQLSAVMECADAAHGLKGHIISDGGCSCPGDVAKAFGAGADFVML 251 (351)
T ss_dssp HHHHHHHHHTTCSEEEECSSCSTTBCHHHHHCBCCCHHHHHHHHHHHHHHTTCEEEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHhCCCEEEECCCCCcCcCccccCCCCccHHHHHHHHHHHHhhcCCcEEEeCCCCCHHHHHHHHHcCCCceec
Confidence 45567777789999988642210 1233444444443 357999999999 7999998886 999999
Q ss_pred eceEe
Q psy9039 240 GSHFK 244 (251)
Q Consensus 240 GS~~~ 244 (251)
||.|.
T Consensus 252 G~~fl 256 (351)
T 2c6q_A 252 GGMLA 256 (351)
T ss_dssp STTTT
T ss_pred cHHHh
Confidence 99996
|
| >2qjg_A Putative aldolase MJ0400; beta-alpha barrel, lyase; HET: F2P; 2.60A {Methanocaldococcus jannaschii} PDB: 2qjh_A 2qji_A | Back alignment and structure |
|---|
Probab=97.31 E-value=0.00016 Score=62.84 Aligned_cols=142 Identities=13% Similarity=0.181 Sum_probs=81.9
Q ss_pred ccEEEEEeeCCh----------HHHHHHHHHcCccce--ecccccccccCCCceeecCcchhHHHHHhcCCCcchhhhhh
Q psy9039 93 VPVGVQILSGCN----------KAALATAQAAGLDFI--RAESFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDI 160 (251)
Q Consensus 93 ~P~Gvn~~~N~~----------~~~~~ia~a~g~~Fi--r~~~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v 160 (251)
+|+.+.+-.... ......+...|++++ ... .+. . ...-......++.+.+++++.. ++..+
T Consensus 80 ~~~~v~~~~~~~~~~d~~~~~~~~~v~~a~~~Ga~~v~~~l~--~~~-~-~~~~~~~~~~~v~~~~~~~g~~---viv~~ 152 (273)
T 2qjg_A 80 VGLIIHLSGGTAISPNPLKKVIVTTVEEAIRMGADAVSIHVN--VGS-D-EDWEAYRDLGMIAETCEYWGMP---LIAMM 152 (273)
T ss_dssp CEEEEECEECCTTSSSTTCCEECSCHHHHHHTTCSEEEEEEE--ETS-T-THHHHHHHHHHHHHHHHHHTCC---EEEEE
T ss_pred CCEEEEEcCCCcCCCCcccchHHHHHHHHHHcCCCEEEEEEe--cCC-C-CHHHHHHHHHHHHHHHHHcCCC---EEEEe
Confidence 588777654321 234555667788887 321 110 0 0001111244556666666652 22111
Q ss_pred HhhccCCCC--CCcccHHHHHHHhhhccccEEEecCCCCCCCCCHHHHHHHHhcCCCCEEEecCCCh---Hh----HHHh
Q psy9039 161 KKKHSSHAI--TADVDITETAKAASFFLSDGLIITGNATGDPADVSQLMSVKNAVDLPILIGSGVTS---DN----VEHY 231 (251)
Q Consensus 161 ~~k~~~~~~--~~~~~i~~~a~~a~~~~~D~v~VTG~~~g~~~~~~~l~~vr~~~~~PV~vG~GI~~---~~----v~~~ 231 (251)
.. .|.++. .+...+.+.++.+...|+|.+.+.- +.+++.++++++.+++||++-|||+. ++ +.++
T Consensus 153 ~~-~G~~l~~~~~~~~~~~~a~~a~~~Gad~i~~~~-----~~~~~~l~~i~~~~~ipvva~GGi~~~~~~~~~~~~~~~ 226 (273)
T 2qjg_A 153 YP-RGKHIQNERDPELVAHAARLGAELGADIVKTSY-----TGDIDSFRDVVKGCPAPVVVAGGPKTNTDEEFLQMIKDA 226 (273)
T ss_dssp EE-CSTTCSCTTCHHHHHHHHHHHHHTTCSEEEECC-----CSSHHHHHHHHHHCSSCEEEECCSCCSSHHHHHHHHHHH
T ss_pred CC-CCcccCCCCCHhHHHHHHHHHHHcCCCEEEECC-----CCCHHHHHHHHHhCCCCEEEEeCCCCCCHHHHHHHHHHH
Confidence 11 132220 1112334444666667999888762 34688899999888999999999973 44 6666
Q ss_pred hc--CCEEEEeceEeecC
Q psy9039 232 MT--ADALIIGSHFKQGG 247 (251)
Q Consensus 232 ~~--ADGvIVGS~~~~~g 247 (251)
+. |||+.+||+|.+..
T Consensus 227 ~~~Ga~gv~vg~~i~~~~ 244 (273)
T 2qjg_A 227 MEAGAAGVAVGRNIFQHD 244 (273)
T ss_dssp HHHTCSEEECCHHHHTSS
T ss_pred HHcCCcEEEeeHHhhCCC
Confidence 65 99999999987653
|
| >1kbi_A Cytochrome B2, L-LCR; flavocytochrome B2, electron transfer, oxidoreductase; HET: HEM FMN; 2.30A {Saccharomyces cerevisiae} SCOP: c.1.4.1 d.120.1.1 PDB: 1fcb_A* 1lco_A* 1ldc_A* 1sze_A* 2oz0_A* 1szf_A* 1szg_A* 1ltd_A* 1kbj_A* 1qcw_A* 3ks0_A* | Back alignment and structure |
|---|
Probab=97.26 E-value=0.00024 Score=67.94 Aligned_cols=69 Identities=20% Similarity=0.316 Sum_probs=53.5
Q ss_pred HHHHHHhhhccccEEEecCCCCCC-----CCCHHHHHHHHhcC-------CCCEEEecCC-ChHhHHHhhc--CCEEEEe
Q psy9039 176 TETAKAASFFLSDGLIITGNATGD-----PADVSQLMSVKNAV-------DLPILIGSGV-TSDNVEHYMT--ADALIIG 240 (251)
Q Consensus 176 ~~~a~~a~~~~~D~v~VTG~~~g~-----~~~~~~l~~vr~~~-------~~PV~vG~GI-~~~~v~~~~~--ADGvIVG 240 (251)
.+.|+.+...|+|++.|+|. .|. .+.++.+.++++.+ ++||++-||| +++++.+++. ||+|.+|
T Consensus 354 ~e~A~~a~~aGad~I~vs~h-gG~~~d~~~~~~~~l~~v~~~v~~~~~~~~ipVia~GGI~~g~Dv~kaLalGAdaV~iG 432 (511)
T 1kbi_A 354 TEDVIKAAEIGVSGVVLSNH-GGRQLDFSRAPIEVLAETMPILEQRNLKDKLEVFVDGGVRRGTDVLKALCLGAKGVGLG 432 (511)
T ss_dssp HHHHHHHHHTTCSEEEECCT-TTTSSTTCCCHHHHHHHHHHHHHTTTCBTTBEEEEESSCCSHHHHHHHHHHTCSEEEEC
T ss_pred HHHHHHHHHcCCCEEEEcCC-CCccCCCCCchHHHHHHHHHHHHhhccCCCcEEEEECCCCCHHHHHHHHHcCCCEEEEC
Confidence 45567777789999999773 221 23356777777765 7999999999 7999998886 9999999
Q ss_pred ceEee
Q psy9039 241 SHFKQ 245 (251)
Q Consensus 241 S~~~~ 245 (251)
+.|..
T Consensus 433 r~~l~ 437 (511)
T 1kbi_A 433 RPFLY 437 (511)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98753
|
| >2gou_A Oxidoreductase, FMN-binding; OLD yeallow enzyme, flavoenzyme; HET: BOG FMN PE4; 1.40A {Shewanella oneidensis} PDB: 2gq8_A* 2gq9_A* 2gqa_A* | Back alignment and structure |
|---|
Probab=97.22 E-value=0.00032 Score=64.20 Aligned_cols=72 Identities=18% Similarity=0.127 Sum_probs=56.4
Q ss_pred HHHHHHhhhccccEEEecCCCC-CCC-CCHHHHHHHHhcCCCCEEEecCCChHhHHHhhc---CCEEEEeceEeecC
Q psy9039 176 TETAKAASFFLSDGLIITGNAT-GDP-ADVSQLMSVKNAVDLPILIGSGVTSDNVEHYMT---ADALIIGSHFKQGG 247 (251)
Q Consensus 176 ~~~a~~a~~~~~D~v~VTG~~~-g~~-~~~~~l~~vr~~~~~PV~vG~GI~~~~v~~~~~---ADGvIVGS~~~~~g 247 (251)
.++++.++..|+|++.+++... +.+ ...+.++++|+.+++||++.|||+++++.+++. ||+|.+|+.|+.|-
T Consensus 253 ~~~a~~l~~~G~d~i~v~~~~~~~~~~~~~~~~~~i~~~~~iPvi~~Ggi~~~~a~~~l~~g~aD~V~igR~~i~~P 329 (365)
T 2gou_A 253 TAAAALLNKHRIVYLHIAEVDWDDAPDTPVSFKRALREAYQGVLIYAGRYNAEKAEQAINDGLADMIGFGRPFIANP 329 (365)
T ss_dssp HHHHHHHHHTTCSEEEEECCBTTBCCCCCHHHHHHHHHHCCSEEEEESSCCHHHHHHHHHTTSCSEEECCHHHHHCT
T ss_pred HHHHHHHHHcCCCEEEEeCCCcCCCCCccHHHHHHHHHHCCCcEEEeCCCCHHHHHHHHHCCCcceehhcHHHHhCc
Confidence 3445555567999999987521 111 235778899999999999999999999999984 99999999988763
|
| >3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex} | Back alignment and structure |
|---|
Probab=97.21 E-value=0.0013 Score=64.67 Aligned_cols=196 Identities=13% Similarity=0.084 Sum_probs=111.9
Q ss_pred cCCCCccEEEEeecC------CCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCC----------------
Q psy9039 46 VPVGVQHGVIVENMH------DVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGC---------------- 103 (251)
Q Consensus 46 ~~~Gv~D~i~ieN~~------~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~---------------- 103 (251)
.++|+ ..|+.|+.. +.|+..+.-..+.....+.++++.+++. . .+++++++-..
T Consensus 54 a~gG~-gliite~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vh~~-g--~~i~~Ql~h~Gr~~~~~~~~~~~~~ps 129 (690)
T 3k30_A 54 AEGGW-SAVCTEQVEIHATSDIAPFIELRIWDDQDLPALKRIADAIHEG-G--GLAGIELAHNGMNAPNQLSRETPLGPG 129 (690)
T ss_dssp HHTTC-SEEEEEEEECSGGGCCTTSCCEECSSGGGHHHHHHHHHHHHHT-T--CEEEEEEECCGGGCCCTTTCCCCEESS
T ss_pred hccCC-EEEEecceEeccccccCCCcCCccCCHHHHHHHHHHHHHHHhc-C--CEEEEEccCCcccccccccCCCccCCC
Confidence 35888 888877432 2343321223456778899999999875 4 48899987210
Q ss_pred -------------h---------------HHHHHHHHHcCccceeccccccc------------ccCCC--ceeecC---
Q psy9039 104 -------------N---------------KAALATAQAAGLDFIRAESFVFG------------HMADE--GLMNAQ--- 138 (251)
Q Consensus 104 -------------~---------------~~~~~ia~a~g~~Fir~~~~~~~------------~~~~~--Gli~~d--- 138 (251)
+ ..+...|...|.+.+.++.-.|. .-+++ |-++.+
T Consensus 130 ~~~~~~~~~~~~~p~~~t~~ei~~~i~~f~~aA~~a~~aGfDgVeih~a~gy~L~~qFlsp~~N~R~D~yGGs~enR~r~ 209 (690)
T 3k30_A 130 HLPVAPDTIAPIQARAMTKQDIDDLRRWHRNAVRRSIEAGYDIVYVYGAHGYSGVHHFLSKRYNQRTDEYGGSLENRMRL 209 (690)
T ss_dssp SCBSCSSCCCSCBCEECCHHHHHHHHHHHHHHHHHHHHHTCSEEEEEECTTCSHHHHHHCTTTCCCCSTTSSSHHHHTHH
T ss_pred CCcccccccCCCCCCcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEcccccchHHHHhCCCccCCCccccCCCHHHHHHH
Confidence 0 11233344567788888644443 11111 333332
Q ss_pred cchh-HHHHHhcCCCcchhhhhhHhhccCCCCCCcccHHHHHHHhhhccccEEEecCCC------C----CCCCCHHHHH
Q psy9039 139 AGPL-LRYRKQIGADNVLVFTDIKKKHSSHAITADVDITETAKAASFFLSDGLIITGNA------T----GDPADVSQLM 207 (251)
Q Consensus 139 a~e~-~~~r~~l~~~~i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~~~~~D~v~VTG~~------~----g~~~~~~~l~ 207 (251)
..|+ ...|+..|. +..+...+.+....+.-.+.....++++..+. ++|++-|++.. . ......+.++
T Consensus 210 ~~ei~~avr~~~g~-~~~v~~r~s~~~~~~~g~~~~~~~~~~~~l~~-~~d~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (690)
T 3k30_A 210 LRELLEDTLDECAG-RAAVACRITVEEEIDGGITREDIEGVLRELGE-LPDLWDFAMGSWEGDSVTSRFAPEGRQEEFVA 287 (690)
T ss_dssp HHHHHHHHHHHHTT-SSEEEEEEECCCCSTTSCCHHHHHHHHHHHTT-SSSEEEEECSCHHHHTCCTTTCCTTTTHHHHT
T ss_pred HHHHHHHHHHHhCC-CceEEEEECccccCCCCCCHHHHHHHHHHHHh-hcCEEEEecccccccCCCCccCCccccHHHHH
Confidence 2222 235555654 32232222211100000111223344444444 79999887632 0 1111246788
Q ss_pred HHHhcCCCCEEEecCC-ChHhHHHhhc---CCEEEEeceEeecC
Q psy9039 208 SVKNAVDLPILIGSGV-TSDNVEHYMT---ADALIIGSHFKQGG 247 (251)
Q Consensus 208 ~vr~~~~~PV~vG~GI-~~~~v~~~~~---ADGvIVGS~~~~~g 247 (251)
++|+.+++||+..||| +++.+.+++. ||+|.+|..|+.|-
T Consensus 288 ~i~~~~~~pvi~~G~i~~~~~a~~~l~~g~~d~v~~gR~~~~~P 331 (690)
T 3k30_A 288 GLKKLTTKPVVGVGRFTSPDAMVRQIKAGILDLIGAARPSIADP 331 (690)
T ss_dssp TSGGGCSSCEEECSCCCCHHHHHHHHHTTSCSEEEESHHHHHCT
T ss_pred HHHHHcCCeEEEeCCCCCHHHHHHHHHCCCcceEEEcHHhHhCc
Confidence 8999999999999999 6899998884 99999999887664
|
| >2bdq_A Copper homeostasis protein CUTC; alpha beta protein, structural genomics, PSI, protein structure initiative; 2.30A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=97.16 E-value=0.0068 Score=51.80 Aligned_cols=64 Identities=14% Similarity=0.302 Sum_probs=45.7
Q ss_pred HHhhhccccEEEecCCCCC--CCCCHHHHHHHHhcC--CCCEEEecCCChHhHHHhhc---CCEEEEeceEe
Q psy9039 180 KAASFFLSDGLIITGNATG--DPADVSQLMSVKNAV--DLPILIGSGVTSDNVEHYMT---ADALIIGSHFK 244 (251)
Q Consensus 180 ~~a~~~~~D~v~VTG~~~g--~~~~~~~l~~vr~~~--~~PV~vG~GI~~~~v~~~~~---ADGvIVGS~~~ 244 (251)
+.....|+|.+-.+|.... .....+.|+++.+.. .+-|++|+||+++|+.++++ ++-+= ||.++
T Consensus 140 e~L~~lGv~rILTSG~~~~~~a~~g~~~L~~Lv~~a~~ri~Im~GgGV~~~Ni~~l~~~tGv~e~H-~s~i~ 210 (224)
T 2bdq_A 140 DQLVALGFTRILLHGSSNGEPIIENIKHIKALVEYANNRIEIMVGGGVTAENYQYICQETGVKQAH-GTRIT 210 (224)
T ss_dssp HHHHHTTCCEEEECSCSSCCCGGGGHHHHHHHHHHHTTSSEEEECSSCCTTTHHHHHHHHTCCEEE-ETTCC
T ss_pred HHHHHcCCCEEECCCCCCCCcHHHHHHHHHHHHHhhCCCeEEEeCCCCCHHHHHHHHHhhCCCEEc-ccccc
Confidence 4444569999999998776 334467777765543 57799999999999999883 65554 44443
|
| >2y88_A Phosphoribosyl isomerase A; aromatic amino acid biosynthesis, TIM-barrel, His biosynthesis, tryptophan biosynthesis; HET: 2ER; 1.33A {Mycobacterium tuberculosis} PDB: 2y89_A 2y85_A* | Back alignment and structure |
|---|
Probab=97.15 E-value=0.00031 Score=59.81 Aligned_cols=70 Identities=9% Similarity=0.124 Sum_probs=52.6
Q ss_pred HHHHHHHhhhccccEEEec---CCCCCCCCCHHHHHHHHhcCCCCEEEecCC-ChHhHHHhhc--CCEEEEeceEee
Q psy9039 175 ITETAKAASFFLSDGLIIT---GNATGDPADVSQLMSVKNAVDLPILIGSGV-TSDNVEHYMT--ADALIIGSHFKQ 245 (251)
Q Consensus 175 i~~~a~~a~~~~~D~v~VT---G~~~g~~~~~~~l~~vr~~~~~PV~vG~GI-~~~~v~~~~~--ADGvIVGS~~~~ 245 (251)
..++++.....|+|.+-+. |...+.... +.++++++.+++|+++++|| +++++.+++. ||++.+|+....
T Consensus 33 ~~~~a~~~~~~Gad~i~v~~~d~~~~~~~~~-~~i~~i~~~~~ipv~v~ggi~~~~~~~~~l~~Gad~V~lg~~~l~ 108 (244)
T 2y88_A 33 AVDAALGWQRDGAEWIHLVDLDAAFGRGSNH-ELLAEVVGKLDVQVELSGGIRDDESLAAALATGCARVNVGTAALE 108 (244)
T ss_dssp HHHHHHHHHHTTCSEEEEEEHHHHTTSCCCH-HHHHHHHHHCSSEEEEESSCCSHHHHHHHHHTTCSEEEECHHHHH
T ss_pred HHHHHHHHHHcCCCEEEEEcCcccccCCChH-HHHHHHHHhcCCcEEEECCCCCHHHHHHHHHcCCCEEEECchHhh
Confidence 3455555555688888764 333233333 78999999999999999999 6899999986 999999997654
|
| >2czd_A Orotidine 5'-phosphate decarboxylase; pyrimidine biosynthesis, orotidine 5'-phosphate decarboxylas (ompdecase), structural genomics; 1.60A {Pyrococcus horikoshii} SCOP: c.1.2.3 PDB: 2cz5_A 2cze_A* 2czf_A* | Back alignment and structure |
|---|
Probab=97.13 E-value=0.0021 Score=53.83 Aligned_cols=65 Identities=14% Similarity=0.243 Sum_probs=47.5
Q ss_pred HHHHHHHhhhccccEEEecCCCCCCCCCHHHHHHHHhcCC-CCEEEecCCChH--hHHHhhc--CCEEEEeceEee
Q psy9039 175 ITETAKAASFFLSDGLIITGNATGDPADVSQLMSVKNAVD-LPILIGSGVTSD--NVEHYMT--ADALIIGSHFKQ 245 (251)
Q Consensus 175 i~~~a~~a~~~~~D~v~VTG~~~g~~~~~~~l~~vr~~~~-~PV~vG~GI~~~--~v~~~~~--ADGvIVGS~~~~ 245 (251)
....++.+...|.|++.+... ..+.++++|+..+ .++++-+||+++ ++.++++ ||++++||++.+
T Consensus 121 v~~~~~~a~~~G~~G~~~~~~------~~~~i~~lr~~~~~~~~iv~gGI~~~g~~~~~~~~aGad~vvvGr~I~~ 190 (208)
T 2czd_A 121 TDRFIEVANEIEPFGVIAPGT------RPERIGYIRDRLKEGIKILAPGIGAQGGKAKDAVKAGADYIIVGRAIYN 190 (208)
T ss_dssp HHHHHHHHHHHCCSEEECCCS------STHHHHHHHHHSCTTCEEEECCCCSSTTHHHHHHHHTCSEEEECHHHHT
T ss_pred HHHHHHHHHHhCCcEEEECCC------ChHHHHHHHHhCCCCeEEEECCCCCCCCCHHHHHHcCCCEEEEChHHhc
Confidence 445555555568888755532 2466777887764 467899999876 8888886 999999998765
|
| >2agk_A 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) methylideneamino] imidazole-4-carboxamide...; TIM alpha/beta barrel; HET: CIT; 1.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.05 E-value=0.00056 Score=59.74 Aligned_cols=68 Identities=15% Similarity=0.118 Sum_probs=53.5
Q ss_pred HHHHHHhhhccccEEEe---cCCCCCCCCCHHHHHHHHhcCCCCEEEecCCChHhHHHhhc-CCEEEEeceEeec-Cee
Q psy9039 176 TETAKAASFFLSDGLII---TGNATGDPADVSQLMSVKNAVDLPILIGSGVTSDNVEHYMT-ADALIIGSHFKQG-GRT 249 (251)
Q Consensus 176 ~~~a~~a~~~~~D~v~V---TG~~~g~~~~~~~l~~vr~~~~~PV~vG~GI~~~~v~~~~~-ADGvIVGS~~~~~-g~~ 249 (251)
.+.|+.....|++.+.+ ++ .+.+.++++.+.+++|+.+||||+..++++++. ||-+++||+.++| |++
T Consensus 41 ~~~A~~~~~~Ga~~l~vvDL~~------~n~~~i~~i~~~~~~pv~vgGGir~~~~~~~l~Ga~~Viigs~a~~~~g~~ 113 (260)
T 2agk_A 41 SYYAKLYKDRDVQGCHVIKLGP------NNDDAAREALQESPQFLQVGGGINDTNCLEWLKWASKVIVTSWLFTKEGHF 113 (260)
T ss_dssp HHHHHHHHHTTCTTCEEEEESS------SCHHHHHHHHHHSTTTSEEESSCCTTTHHHHTTTCSCEEECGGGBCTTCCB
T ss_pred HHHHHHHHHcCCCEEEEEeCCC------CCHHHHHHHHhcCCceEEEeCCCCHHHHHHHhcCCCEEEECcHHHhhcCCC
Confidence 44555555457777766 65 467889999998999999999996458888888 9999999998888 654
|
| >1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1 | Back alignment and structure |
|---|
Probab=97.04 E-value=0.00032 Score=59.40 Aligned_cols=73 Identities=21% Similarity=0.278 Sum_probs=55.5
Q ss_pred cHHHHHHHhhhccccEEEecCCCCCCC---CCHHHHHHHHhcCCCCEEEecCC-ChHhHHHhhc--CCEEEEeceEeec
Q psy9039 174 DITETAKAASFFLSDGLIITGNATGDP---ADVSQLMSVKNAVDLPILIGSGV-TSDNVEHYMT--ADALIIGSHFKQG 246 (251)
Q Consensus 174 ~i~~~a~~a~~~~~D~v~VTG~~~g~~---~~~~~l~~vr~~~~~PV~vG~GI-~~~~v~~~~~--ADGvIVGS~~~~~ 246 (251)
...+.++.....|+|++.++....... ...+.++++++.+++|+++++|+ +++++.+++. ||++.+|+.+..+
T Consensus 34 ~~~~~a~~~~~~G~d~i~v~~~~~~~~~~~~~~~~i~~i~~~~~ipvi~~g~i~~~~~~~~~~~~Gad~V~i~~~~~~~ 112 (253)
T 1h5y_A 34 DPVEMAVRYEEEGADEIAILDITAAPEGRATFIDSVKRVAEAVSIPVLVGGGVRSLEDATTLFRAGADKVSVNTAAVRN 112 (253)
T ss_dssp CHHHHHHHHHHTTCSCEEEEECCCCTTTHHHHHHHHHHHHHHCSSCEEEESSCCSHHHHHHHHHHTCSEEEESHHHHHC
T ss_pred cHHHHHHHHHHcCCCEEEEEeCCccccCCcccHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcCCCEEEEChHHhhC
Confidence 455666766667999998875432211 23467888998889999999999 6899988886 9999999876543
|
| >1vzw_A Phosphoribosyl isomerase A; histidine biosynthesis, tryptophan biosynthesis; 1.8A {Streptomyces coelicolor} SCOP: c.1.2.1 PDB: 2vep_A 2x30_A | Back alignment and structure |
|---|
Probab=97.03 E-value=0.00038 Score=59.44 Aligned_cols=71 Identities=14% Similarity=0.154 Sum_probs=53.5
Q ss_pred cHHHHHHHhhhccccEEEecC---CCCCCCCCHHHHHHHHhcCCCCEEEecCC-ChHhHHHhhc--CCEEEEeceEee
Q psy9039 174 DITETAKAASFFLSDGLIITG---NATGDPADVSQLMSVKNAVDLPILIGSGV-TSDNVEHYMT--ADALIIGSHFKQ 245 (251)
Q Consensus 174 ~i~~~a~~a~~~~~D~v~VTG---~~~g~~~~~~~l~~vr~~~~~PV~vG~GI-~~~~v~~~~~--ADGvIVGS~~~~ 245 (251)
...+.++.....|+|.+-+.. ...+.... +.++++++.+++|+++++|| +++++.+++. ||++.+|+....
T Consensus 33 d~~~~a~~~~~~Gad~i~v~~~d~~~~~~~~~-~~i~~i~~~~~ipv~v~ggI~~~~~~~~~l~~Gad~V~lg~~~l~ 109 (244)
T 1vzw_A 33 SPLEAALAWQRSGAEWLHLVDLDAAFGTGDNR-ALIAEVAQAMDIKVELSGGIRDDDTLAAALATGCTRVNLGTAALE 109 (244)
T ss_dssp CHHHHHHHHHHTTCSEEEEEEHHHHHTSCCCH-HHHHHHHHHCSSEEEEESSCCSHHHHHHHHHTTCSEEEECHHHHH
T ss_pred CHHHHHHHHHHcCCCEEEEecCchhhcCCChH-HHHHHHHHhcCCcEEEECCcCCHHHHHHHHHcCCCEEEECchHhh
Confidence 345555665557889886643 32233444 77999999999999999999 6899998886 999999996543
|
| >1q6o_A Humps, 3-keto-L-gulonate 6-phosphate decarboxylase, D-; beta barrel, lyase; HET: LG6; 1.20A {Escherichia coli} SCOP: c.1.2.3 PDB: 1kw1_A* 1q6l_A* 1kv8_A* 1q6q_A* 1q6r_A* 1xbv_A* 1so5_A* 1so4_A* 1xby_A* 1so3_A* 1so6_A* 1xbz_A* 1xbx_A* | Back alignment and structure |
|---|
Probab=97.02 E-value=0.0032 Score=52.96 Aligned_cols=44 Identities=9% Similarity=0.328 Sum_probs=37.9
Q ss_pred CHHHHHHHHhcC--CCCEEEecCCChHhHHHhhc--CCEEEEeceEee
Q psy9039 202 DVSQLMSVKNAV--DLPILIGSGVTSDNVEHYMT--ADALIIGSHFKQ 245 (251)
Q Consensus 202 ~~~~l~~vr~~~--~~PV~vG~GI~~~~v~~~~~--ADGvIVGS~~~~ 245 (251)
..+.++++|+.. +.|+++-+||+++++.++++ ||+++|||++.+
T Consensus 149 ~~~~i~~lr~~~~~~~~i~v~GGI~~~~~~~~~~aGad~ivvG~~I~~ 196 (216)
T 1q6o_A 149 GEADITAIKRLSDMGFKVTVTGGLALEDLPLFKGIPIHVFIAGRSIRD 196 (216)
T ss_dssp CHHHHHHHHHHHHTTCEEEEESSCCGGGGGGGTTSCCSEEEESHHHHT
T ss_pred CHHHHHHHHHhcCCCCcEEEECCcChhhHHHHHHcCCCEEEEeehhcC
Confidence 467788888776 68899999999999999986 999999998765
|
| >1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1 | Back alignment and structure |
|---|
Probab=96.96 E-value=0.00085 Score=63.42 Aligned_cols=68 Identities=21% Similarity=0.377 Sum_probs=49.3
Q ss_pred HHHHHHhhhccccEEEecCCCCC-----------CCCCHHHHHHHHh---cCCCCEEEecCC-ChHhHHHhhc--CCEEE
Q psy9039 176 TETAKAASFFLSDGLIITGNATG-----------DPADVSQLMSVKN---AVDLPILIGSGV-TSDNVEHYMT--ADALI 238 (251)
Q Consensus 176 ~~~a~~a~~~~~D~v~VTG~~~g-----------~~~~~~~l~~vr~---~~~~PV~vG~GI-~~~~v~~~~~--ADGvI 238 (251)
.+.++.+...|+|++.|++. .| ..+....+..+++ ..++||++.||| +++++.+++. ||+|.
T Consensus 289 ~e~a~~l~~~G~d~I~v~~~-~G~~~~~~~~~~~g~p~~~~l~~v~~~~~~~~ipvia~GGI~~~~di~kala~GAd~V~ 367 (494)
T 1vrd_A 289 PEGTEALIKAGADAVKVGVG-PGSICTTRVVAGVGVPQLTAVMECSEVARKYDVPIIADGGIRYSGDIVKALAAGAESVM 367 (494)
T ss_dssp HHHHHHHHHTTCSEEEECSS-CSTTCHHHHHHCCCCCHHHHHHHHHHHHHTTTCCEEEESCCCSHHHHHHHHHTTCSEEE
T ss_pred HHHHHHHHHcCCCEEEEcCC-CCccccccccCCCCccHHHHHHHHHHHHhhcCCCEEEECCcCCHHHHHHHHHcCCCEEE
Confidence 34456666679999999543 22 1233444454444 368999999999 7999999886 99999
Q ss_pred EeceEe
Q psy9039 239 IGSHFK 244 (251)
Q Consensus 239 VGS~~~ 244 (251)
+|++|.
T Consensus 368 iGr~~l 373 (494)
T 1vrd_A 368 VGSIFA 373 (494)
T ss_dssp ESHHHH
T ss_pred ECHHHh
Confidence 999995
|
| >3vkj_A Isopentenyl-diphosphate delta-isomerase; type 2 isopentenyl diphosphate isomerase; HET: FNR; 1.70A {Sulfolobus shibatae} PDB: 2zrv_A* 2zrw_A* 2zrx_A* 2zry_A* 2zrz_A* 3b03_A* 3b04_A* 3b05_A* 3b06_A* 2zru_A* | Back alignment and structure |
|---|
Probab=96.90 E-value=0.00085 Score=61.55 Aligned_cols=69 Identities=19% Similarity=0.218 Sum_probs=52.7
Q ss_pred HHHHHHhhhccccEEEecCCCCC----------------------------CCCCHHHHHHHHhcC-CCCEEEecCC-Ch
Q psy9039 176 TETAKAASFFLSDGLIITGNATG----------------------------DPADVSQLMSVKNAV-DLPILIGSGV-TS 225 (251)
Q Consensus 176 ~~~a~~a~~~~~D~v~VTG~~~g----------------------------~~~~~~~l~~vr~~~-~~PV~vG~GI-~~ 225 (251)
.+.|+.+...|+|++.|+|.. | ..+....+.++++.. ++||++-||| ++
T Consensus 201 ~~~A~~l~~aGad~I~V~g~G-Gt~~~~iE~~R~~~~~~~~~~~~~~~~~~g~pt~~~l~~v~~~~~~ipvia~GGI~~~ 279 (368)
T 3vkj_A 201 METAKLLYSYGIKNFDTSGQG-GTNWIAIEMIRDIRRGNWKAESAKNFLDWGVPTAASIMEVRYSVPDSFLVGSGGIRSG 279 (368)
T ss_dssp HHHHHHHHHTTCCEEECCCBT-SBCHHHHHHHHHHHTTCTHHHHHHHTTTCSCBHHHHHHHHHHHSTTCEEEEESSCCSH
T ss_pred HHHHHHHHhCCCCEEEEeCCC-CCcccchhhhhcccccccchhhccccccccccHHHHHHHHHHHcCCCcEEEECCCCCH
Confidence 455677777899999997751 2 112234567788777 5999999999 79
Q ss_pred HhHHHhhc--CCEEEEeceEee
Q psy9039 226 DNVEHYMT--ADALIIGSHFKQ 245 (251)
Q Consensus 226 ~~v~~~~~--ADGvIVGS~~~~ 245 (251)
.++.+.+. ||+|.+|+.|..
T Consensus 280 ~d~~kal~lGA~~v~ig~~~l~ 301 (368)
T 3vkj_A 280 LDAAKAIALGADIAGMALPVLK 301 (368)
T ss_dssp HHHHHHHHHTCSEEEECHHHHH
T ss_pred HHHHHHHHcCCCEEEEcHHHHH
Confidence 99888886 999999998763
|
| >4gj1_A 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) methylideneamino] imidazole-4-carboxamide...; HISA, csgid, niaid,; 2.15A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=96.86 E-value=0.00046 Score=59.62 Aligned_cols=64 Identities=16% Similarity=0.313 Sum_probs=52.9
Q ss_pred ccccEEEe---cCCCCCCCCCHHHHHHHHhcCCCCEEEecCC-ChHhHHHhhc--CCEEEEeceEeecCe
Q psy9039 185 FLSDGLII---TGNATGDPADVSQLMSVKNAVDLPILIGSGV-TSDNVEHYMT--ADALIIGSHFKQGGR 248 (251)
Q Consensus 185 ~~~D~v~V---TG~~~g~~~~~~~l~~vr~~~~~PV~vG~GI-~~~~v~~~~~--ADGvIVGS~~~~~g~ 248 (251)
.|+|-+.+ +|+..+.....+.++++.+.+.+|+-+|||| +.++++++++ ||=+++||+..++.+
T Consensus 43 ~gad~lhvvDld~a~~~~~~~~~~i~~i~~~~~~pl~vGGGIrs~e~~~~~l~~GadkVii~t~a~~~p~ 112 (243)
T 4gj1_A 43 AGAKELHLVDLTGAKDPSKRQFALIEKLAKEVSVNLQVGGGIRSKEEVKALLDCGVKRVVIGSMAIKDAT 112 (243)
T ss_dssp HTCCEEEEEEHHHHHCGGGCCHHHHHHHHHHCCSEEEEESSCCCHHHHHHHHHTTCSEEEECTTTTTCHH
T ss_pred CCCCEEEEEecCcccccchhHHHHHHHHHHhcCCCeEeccccccHHHHHHHHHcCCCEEEEccccccCCc
Confidence 47776654 5666666677899999999999999999999 6899999996 999999998877643
|
| >3sr7_A Isopentenyl-diphosphate delta-isomerase; isopentenyl pyrophosphate isomerase, TIM-barrel; 2.04A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=96.78 E-value=0.0012 Score=60.59 Aligned_cols=70 Identities=16% Similarity=0.216 Sum_probs=51.2
Q ss_pred HHHHHHhhhccccEEEecCCC-CC------------------CCCCHHHHHHHHhcC-CCCEEEecCC-ChHhHHHhhc-
Q psy9039 176 TETAKAASFFLSDGLIITGNA-TG------------------DPADVSQLMSVKNAV-DLPILIGSGV-TSDNVEHYMT- 233 (251)
Q Consensus 176 ~~~a~~a~~~~~D~v~VTG~~-~g------------------~~~~~~~l~~vr~~~-~~PV~vG~GI-~~~~v~~~~~- 233 (251)
.+.|+.+...|+|++.|+|.. +. ..+....+..++... ++||++-||| ++.++.+++.
T Consensus 220 ~e~A~~l~~aGad~I~V~g~GGt~~a~ie~~r~~~~~~~~~~g~pt~~~L~~v~~~~~~ipvia~GGI~~g~Dv~KaLal 299 (365)
T 3sr7_A 220 VKTIQTAIDLGVKTVDISGRGGTSFAYIENRRGGNRSYLNQWGQTTAQVLLNAQPLMDKVEILASGGIRHPLDIIKALVL 299 (365)
T ss_dssp HHHHHHHHHHTCCEEECCCBC--------------CGGGTTCSCBHHHHHHHHGGGTTTSEEEECSSCCSHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCEEEEeCCCCcccchhhccccccccccccccccHHHHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHHc
Confidence 345666667799999998751 10 112235566666544 7999999999 7999888886
Q ss_pred -CCEEEEeceEee
Q psy9039 234 -ADALIIGSHFKQ 245 (251)
Q Consensus 234 -ADGvIVGS~~~~ 245 (251)
||+|.+||.|..
T Consensus 300 GAdaV~ig~~~l~ 312 (365)
T 3sr7_A 300 GAKAVGLSRTMLE 312 (365)
T ss_dssp TCSEEEESHHHHH
T ss_pred CCCEEEECHHHHH
Confidence 999999998864
|
| >1twd_A Copper homeostasis protein CUTC; TIM-like protein, structural genomics, PSI, protein structure initiative; 1.70A {Shigella flexneri} SCOP: c.1.30.1 PDB: 1x7i_A 1x8c_A | Back alignment and structure |
|---|
Probab=96.74 E-value=0.0092 Score=51.96 Aligned_cols=59 Identities=15% Similarity=0.281 Sum_probs=45.0
Q ss_pred HHhhhccccEEEecCCCCCCCCCHHHHHHHHhcC-CCCEEEecCCChHhHHHhhc--CCEEE
Q psy9039 180 KAASFFLSDGLIITGNATGDPADVSQLMSVKNAV-DLPILIGSGVTSDNVEHYMT--ADALI 238 (251)
Q Consensus 180 ~~a~~~~~D~v~VTG~~~g~~~~~~~l~~vr~~~-~~PV~vG~GI~~~~v~~~~~--ADGvI 238 (251)
+.....|+|.+-.+|....-....+.|+++.+.. .+-|++|+||+++|+.+++. ++-+=
T Consensus 135 e~L~~lG~~rILTSG~~~~a~~g~~~L~~Lv~~a~~i~Im~GgGv~~~Ni~~l~~tGv~e~H 196 (256)
T 1twd_A 135 NNLAELGIARVLTSGQKSDALQGLSKIMELIAHRDAPIIMAGAGVRAENLHHFLDAGVLEVH 196 (256)
T ss_dssp HHHHHHTCCEEEECTTSSSTTTTHHHHHHHHTSSSCCEEEEESSCCTTTHHHHHHHTCSEEE
T ss_pred HHHHHcCCCEEECCCCCCCHHHHHHHHHHHHHhhCCcEEEecCCcCHHHHHHHHHcCCCeEe
Confidence 4444469999999998776666778888876644 67799999999999998873 54443
|
| >1w8s_A FBP aldolase, fructose-bisphosphate aldolase class I; TIM barrel, glycolytic, archaeal, catalytic mechanism, reaction intermediate, lyase; HET: FBP; 1.85A {Thermoproteus tenax} SCOP: c.1.10.1 PDB: 1w8r_A* 2yce_A* 1ojx_A 1ok4_A 1ok6_A | Back alignment and structure |
|---|
Probab=96.74 E-value=0.0014 Score=57.32 Aligned_cols=63 Identities=21% Similarity=0.261 Sum_probs=47.4
Q ss_pred HHHhhhccccEEEecCCCCCCCCCHHHHHHHHhcCCC-CEEEecCCChH-------hHHHhhc--CCEEEEeceEeec
Q psy9039 179 AKAASFFLSDGLIITGNATGDPADVSQLMSVKNAVDL-PILIGSGVTSD-------NVEHYMT--ADALIIGSHFKQG 246 (251)
Q Consensus 179 a~~a~~~~~D~v~VTG~~~g~~~~~~~l~~vr~~~~~-PV~vG~GI~~~-------~v~~~~~--ADGvIVGS~~~~~ 246 (251)
++.+...|+|.+.+. . +.+.+.++++++.++. ||++.|||+.+ ++.++++ |+|+++|+++.+.
T Consensus 165 ~~~a~~~GAD~vkt~-~----~~~~e~~~~~~~~~~~~pV~asGGi~~~~~~~~l~~i~~~~~aGA~GvsvgraI~~~ 237 (263)
T 1w8s_A 165 ARIALELGADAMKIK-Y----TGDPKTFSWAVKVAGKVPVLMSGGPKTKTEEDFLKQVEGVLEAGALGIAVGRNVWQR 237 (263)
T ss_dssp HHHHHHHTCSEEEEE-C----CSSHHHHHHHHHHTTTSCEEEECCSCCSSHHHHHHHHHHHHHTTCCEEEESHHHHTS
T ss_pred HHHHHHcCCCEEEEc-C----CCCHHHHHHHHHhCCCCeEEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEEehhhcCC
Confidence 344445799998776 2 2367889999988877 99999999633 5555555 9999999988654
|
| >1vc4_A Indole-3-glycerol phosphate synthase; lyase, tryptophan biosynthesis, riken structural genomics/PR initiative, RSGI, structural genomics; 1.80A {Thermus thermophilus} SCOP: c.1.2.4 | Back alignment and structure |
|---|
Probab=96.63 E-value=0.0061 Score=52.93 Aligned_cols=71 Identities=25% Similarity=0.145 Sum_probs=55.2
Q ss_pred ccHHHHHHHhhhccccEEEe-cCCCCCCCCCHHHHHHHHhcCCCCEEEecCC-ChHhHHHhhc--CCEEEEeceEe
Q psy9039 173 VDITETAKAASFFLSDGLII-TGNATGDPADVSQLMSVKNAVDLPILIGSGV-TSDNVEHYMT--ADALIIGSHFK 244 (251)
Q Consensus 173 ~~i~~~a~~a~~~~~D~v~V-TG~~~g~~~~~~~l~~vr~~~~~PV~vG~GI-~~~~v~~~~~--ADGvIVGS~~~ 244 (251)
....++|+..+..|++++-| |-.. -.....+.++.+|+.+++||+.+.+| ++.++.++.. ||++.+|++..
T Consensus 65 ~~p~~~A~~~~~~GA~~isvlt~~~-~f~G~~~~l~~i~~~v~lPvl~kdfI~d~~qi~~a~~~GAD~VlL~~~~l 139 (254)
T 1vc4_A 65 VDPVEAALAYARGGARAVSVLTEPH-RFGGSLLDLKRVREAVDLPLLRKDFVVDPFMLEEARAFGASAALLIVALL 139 (254)
T ss_dssp CCHHHHHHHHHHTTCSEEEEECCCS-SSCCCHHHHHHHHHHCCSCEEEESCCCSHHHHHHHHHTTCSEEEEEHHHH
T ss_pred CCHHHHHHHHHHcCCCEEEEecchh-hhccCHHHHHHHHHhcCCCEEECCcCCCHHHHHHHHHcCCCEEEECccch
Confidence 45677777777789999865 4332 23346788999999999999999999 5778888775 99999998754
|
| >1vkf_A Glycerol uptake operon antiterminator-related Pro; struc genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: CIT; 1.65A {Thermotoga maritima} SCOP: c.1.29.1 | Back alignment and structure |
|---|
Probab=96.59 E-value=0.0034 Score=52.33 Aligned_cols=127 Identities=13% Similarity=0.088 Sum_probs=77.7
Q ss_pred HHHHHHHHHHhCCCCccEEEEEeeCChH--HHHHHHHHcCccceecccccccccCCCceeecCcchhHHHHHhcCCCcch
Q psy9039 78 MTRLCAEIRKVLPPSVPVGVQILSGCNK--AALATAQAAGLDFIRAESFVFGHMADEGLMNAQAGPLLRYRKQIGADNVL 155 (251)
Q Consensus 78 ~~~~i~~vr~~~~~~~P~Gvn~~~N~~~--~~~~ia~a~g~~Fir~~~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~ 155 (251)
+..+++++|+. . .|+-|+.=.-... .+.++ .|++ ....+|++... ....+..+++|...|+
T Consensus 45 L~~iv~~ik~~-g--K~vivh~DlI~GLs~d~~ai------~fL~-------~~~pdGIIsTk-~~~i~~Akk~GL~tIq 107 (188)
T 1vkf_A 45 LKFHLKILKDR-G--KTVFVDMDFVNGLGEGEEAI------LFVK-------KAGADGIITIK-PKNYVVAKKNGIPAVL 107 (188)
T ss_dssp HHHHHHHHHHT-T--CEEEEEGGGEETCCSSHHHH------HHHH-------HHTCSEEEESC-HHHHHHHHHTTCCEEE
T ss_pred HHHHHHHHHHC-C--CeEEEecCcccccCCCHHHH------HHHH-------hcCCCEEEcCc-HHHHHHHHHcCCEEee
Confidence 77888999887 5 5766653111111 22333 5651 24577877766 4455667777876554
Q ss_pred hhhhhHhhccCCCCCCcccHHHHHHHhhhccccEEEecCCCCCCCCC--HHHHHHHHhcCCCCEEEecCC-ChHhHHHhh
Q psy9039 156 VFTDIKKKHSSHAITADVDITETAKAASFFLSDGLIITGNATGDPAD--VSQLMSVKNAVDLPILIGSGV-TSDNVEHYM 232 (251)
Q Consensus 156 i~a~v~~k~~~~~~~~~~~i~~~a~~a~~~~~D~v~VTG~~~g~~~~--~~~l~~vr~~~~~PV~vG~GI-~~~~v~~~~ 232 (251)
-+. ..+...++...+......+|++-+- +.. .+.++++ +++|+++||+| |+|++.+ +
T Consensus 108 R~F----------liDs~al~~~~~~I~~~kPD~iEiL------Pg~v~p~~I~~v---~~~PiIaGGlI~t~edv~~-l 167 (188)
T 1vkf_A 108 RFF----------ALDSKAVERGIEQIETLGVDVVEVL------PGAVAPKVARKI---PGRTVIAAGLVETEEEARE-I 167 (188)
T ss_dssp EEE----------CCSHHHHHHHHHHHHHHTCSEEEEE------SGGGHHHHHTTS---TTSEEEEESCCCSHHHHHH-H
T ss_pred EEE----------EEEeHHHhhhhhhccccCCCeEeec------CCCchHHHHHHh---cCCCEEEECCcCCHHHHHH-H
Confidence 431 1222334444444444567775443 222 3555555 78999999999 7999999 7
Q ss_pred c--CCEEEEec
Q psy9039 233 T--ADALIIGS 241 (251)
Q Consensus 233 ~--ADGvIVGS 241 (251)
+ ||++..|+
T Consensus 168 ~aGA~aIsTs~ 178 (188)
T 1vkf_A 168 LKHVSAISTSS 178 (188)
T ss_dssp TTTSSEEEECC
T ss_pred HCCCeEEEeCC
Confidence 5 99999886
|
| >1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A* | Back alignment and structure |
|---|
Probab=96.54 E-value=0.0023 Score=60.87 Aligned_cols=70 Identities=17% Similarity=0.204 Sum_probs=50.0
Q ss_pred cHHHHHHHhhhccccEEEecCCCCCC-----------CCCHHHHHHHHhcC---------CCCEEEecCC-ChHhHHHhh
Q psy9039 174 DITETAKAASFFLSDGLIITGNATGD-----------PADVSQLMSVKNAV---------DLPILIGSGV-TSDNVEHYM 232 (251)
Q Consensus 174 ~i~~~a~~a~~~~~D~v~VTG~~~g~-----------~~~~~~l~~vr~~~---------~~PV~vG~GI-~~~~v~~~~ 232 (251)
...+.++.+...|+|++.| |...|. .+....+.++.+.+ ++||++.||| ++.++.+++
T Consensus 293 ~t~~~a~~l~~aGad~I~V-g~~~g~~~~~r~~~~~g~p~~~~l~~v~~~~~~~~~~~~~~ipvia~GGi~~~~di~kAl 371 (503)
T 1me8_A 293 VDGEGFRYLADAGADFIKI-GIGGGSICITREQKGIGRGQATAVIDVVAERNKYFEETGIYIPVCSDGGIVYDYHMTLAL 371 (503)
T ss_dssp CSHHHHHHHHHHTCSEEEE-CSSCSTTCCSTTTTCCCCCHHHHHHHHHHHHHHHHHHHSEECCEEEESCCCSHHHHHHHH
T ss_pred cCHHHHHHHHHhCCCeEEe-cccCCcCcccccccCCCCchHHHHHHHHHHHHHHhhhcCCCceEEEeCCCCCHHHHHHHH
Confidence 3344556666679999988 654321 13345555554432 6999999999 799988888
Q ss_pred c--CCEEEEeceEe
Q psy9039 233 T--ADALIIGSHFK 244 (251)
Q Consensus 233 ~--ADGvIVGS~~~ 244 (251)
. ||+|.+||.|.
T Consensus 372 alGA~~V~iG~~~~ 385 (503)
T 1me8_A 372 AMGADFIMLGRYFA 385 (503)
T ss_dssp HTTCSEEEESHHHH
T ss_pred HcCCCEEEECchhh
Confidence 6 99999999984
|
| >3exr_A RMPD (hexulose-6-phosphate synthase); beta barrel, lyase; 1.70A {Streptococcus mutans} SCOP: c.1.2.3 PDB: 3exs_A* 3ext_A | Back alignment and structure |
|---|
Probab=96.53 E-value=0.0033 Score=53.46 Aligned_cols=48 Identities=17% Similarity=0.329 Sum_probs=38.3
Q ss_pred CCCCCHHHHHHHHhcC--CCCEEEecCCChHhHHHhhc--CCEEEEeceEee
Q psy9039 198 GDPADVSQLMSVKNAV--DLPILIGSGVTSDNVEHYMT--ADALIIGSHFKQ 245 (251)
Q Consensus 198 g~~~~~~~l~~vr~~~--~~PV~vG~GI~~~~v~~~~~--ADGvIVGS~~~~ 245 (251)
|.....+.++++|+.+ +.|+.+-+||++++++++.. ||.++|||++-+
T Consensus 150 Gvv~s~~e~~~ir~~~~~~~~i~v~gGI~~~~~~~~~~aGad~~VvG~~I~~ 201 (221)
T 3exr_A 150 GETWGEKDLNKVKKLIEMGFRVSVTGGLSVDTLKLFEGVDVFTFIAGRGITE 201 (221)
T ss_dssp TCCCCHHHHHHHHHHHHHTCEEEEESSCCGGGGGGGTTCCCSEEEECHHHHT
T ss_pred ccccCHHHHHHHHHhhcCCceEEEECCCCHHHHHHHHHCCCCEEEECchhhC
Confidence 3333456777777765 68899999999999998886 999999998754
|
| >1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1 | Back alignment and structure |
|---|
Probab=96.49 E-value=0.0031 Score=59.35 Aligned_cols=67 Identities=19% Similarity=0.270 Sum_probs=48.3
Q ss_pred HHHHHhhhccccEEEecCCCC----------C-CCCCHHHHHHHHh---cCCCCEEEecCC-ChHhHHHhhc--CCEEEE
Q psy9039 177 ETAKAASFFLSDGLIITGNAT----------G-DPADVSQLMSVKN---AVDLPILIGSGV-TSDNVEHYMT--ADALII 239 (251)
Q Consensus 177 ~~a~~a~~~~~D~v~VTG~~~----------g-~~~~~~~l~~vr~---~~~~PV~vG~GI-~~~~v~~~~~--ADGvIV 239 (251)
+.++.+...|+|++.|+ ... + ..+..+.+.++.+ ..++||++.||| +++++.+++. ||+|++
T Consensus 286 ~~a~~~~~~Gad~I~vg-~g~g~~~~tr~~~~~~~p~~~~l~~~~~~~~~~~ipvia~GGi~~~~di~kal~~GA~~v~v 364 (491)
T 1zfj_A 286 EGARALYDAGVDVVKVG-IGPGSICTTRVVAGVGVPQVTAIYDAAAVAREYGKTIIADGGIKYSGDIVKALAAGGNAVML 364 (491)
T ss_dssp HHHHHHHHTTCSEEEEC-SSCCTTBCHHHHTCCCCCHHHHHHHHHHHHHHTTCEEEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHcCCCEEEEC-ccCCcceEEeeecCCCCCcHHHHHHHHHHHhhcCCCEEeeCCCCCHHHHHHHHHcCCcceee
Confidence 44555555799999773 211 1 1234455665554 358999999999 7999998886 999999
Q ss_pred eceEe
Q psy9039 240 GSHFK 244 (251)
Q Consensus 240 GS~~~ 244 (251)
||+|.
T Consensus 365 G~~~~ 369 (491)
T 1zfj_A 365 GSMFA 369 (491)
T ss_dssp STTTT
T ss_pred CHHhh
Confidence 99996
|
| >4a3u_A NCR, NADH\:flavin oxidoreductase/NADH oxidase; HET: FMN; 1.70A {Zymomonas mobilis} | Back alignment and structure |
|---|
Probab=96.47 E-value=0.01 Score=53.90 Aligned_cols=64 Identities=14% Similarity=0.164 Sum_probs=45.2
Q ss_pred ccccEEEecCCCCCC----CCCHHHHHHHHhcCCCCEEEecCCChHhHHHhhc---CCEEEEeceEeecCe
Q psy9039 185 FLSDGLIITGNATGD----PADVSQLMSVKNAVDLPILIGSGVTSDNVEHYMT---ADALIIGSHFKQGGR 248 (251)
Q Consensus 185 ~~~D~v~VTG~~~g~----~~~~~~l~~vr~~~~~PV~vG~GI~~~~v~~~~~---ADGvIVGS~~~~~g~ 248 (251)
.++|.+.+++..... .......+++|+.+..||++|++.+++.+.++++ ||.|-+|-.|+.|=+
T Consensus 253 ~~~~~i~~~~~~~~~~~~~~~~~~~a~~ik~~~~~~v~~~g~~~~~~ae~~l~~G~aD~V~~gR~~ladPd 323 (358)
T 4a3u_A 253 LDIAFLGMREGAVDGTFGKTDQPKLSPEIRKVFKPPLVLNQDYTFETAQAALDSGVADAISFGRPFIGNPD 323 (358)
T ss_dssp HTCSEEEEECCBTTCSSSBCSSCCCHHHHHHHCCSCEEEESSCCHHHHHHHHHHTSCSEEEESHHHHHCTT
T ss_pred cCccccccccccccCcccccccHHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHcCCceEeHhhHHHHhChh
Confidence 467777665432211 1112345677888889999988889999999984 999999988877643
|
| >1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf; substrate channeling, amidotransferase, TIM-barrel AS A SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae} SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A 1ox4_A | Back alignment and structure |
|---|
Probab=96.23 E-value=0.0064 Score=58.50 Aligned_cols=70 Identities=19% Similarity=0.217 Sum_probs=49.4
Q ss_pred HHHHHHhhhccccEEEe---cCCCCCC---CCCHHHHHHHHhcCCCCEEEecCC-Ch-----------HhHHHhhc--CC
Q psy9039 176 TETAKAASFFLSDGLII---TGNATGD---PADVSQLMSVKNAVDLPILIGSGV-TS-----------DNVEHYMT--AD 235 (251)
Q Consensus 176 ~~~a~~a~~~~~D~v~V---TG~~~g~---~~~~~~l~~vr~~~~~PV~vG~GI-~~-----------~~v~~~~~--AD 235 (251)
.++|+.....|+|.+.+ +|.+.+. ....+.++++++.+++||.+|||| +. +++.+++. ||
T Consensus 283 ~~~A~~~~~~Ga~~l~~~dl~~~~~~~~~~~~~~~~i~~i~~~~~ipi~vgGGIr~~~d~~~~~~~~~~~a~~~l~aGad 362 (555)
T 1jvn_A 283 VQLAQKYYQQGADEVTFLNITSFRDCPLKDTPMLEVLKQAAKTVFVPLTVGGGIKDIVDVDGTKIPALEVASLYFRSGAD 362 (555)
T ss_dssp HHHHHHHHHTTCSEEEEEEEC---CCCGGGCHHHHHHHHHTTTCCSCEEEESSCSCEECTTCCEECHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHcCCCEEEEEeCCccccccCCCchHHHHHHHHHhhCCCcEEEeCccccchhcccccchHHHHHHHHHHcCCC
Confidence 34455444458888755 4544332 223578889988899999999999 55 56999986 99
Q ss_pred EEEEeceEee
Q psy9039 236 ALIIGSHFKQ 245 (251)
Q Consensus 236 GvIVGS~~~~ 245 (251)
-+++||...+
T Consensus 363 ~V~igt~~~~ 372 (555)
T 1jvn_A 363 KVSIGTDAVY 372 (555)
T ss_dssp EEEECHHHHH
T ss_pred EEEECCHHhh
Confidence 9999998754
|
| >3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A* | Back alignment and structure |
|---|
Probab=96.09 E-value=0.0047 Score=54.24 Aligned_cols=74 Identities=16% Similarity=0.083 Sum_probs=52.6
Q ss_pred cccHHHHHHHhhhccccEEEecCCCCCCCCCHHHHHHHHhcCCCCEEEecCC-ChHhHHHhhc--CCEEEEeceEee
Q psy9039 172 DVDITETAKAASFFLSDGLIITGNATGDPADVSQLMSVKNAVDLPILIGSGV-TSDNVEHYMT--ADALIIGSHFKQ 245 (251)
Q Consensus 172 ~~~i~~~a~~a~~~~~D~v~VTG~~~g~~~~~~~l~~vr~~~~~PV~vG~GI-~~~~v~~~~~--ADGvIVGS~~~~ 245 (251)
+....++|+..+..|++++-|.=...-.....+.++++|+.+++||+....| ++.++.++.. |||+++|.+...
T Consensus 71 ~~~p~~~A~~y~~~GA~~isvltd~~~f~Gs~~~l~~ir~~v~lPvl~kdfiid~~qv~~A~~~GAD~VlLi~a~l~ 147 (272)
T 3qja_A 71 IADPAKLAQAYQDGGARIVSVVTEQRRFQGSLDDLDAVRASVSIPVLRKDFVVQPYQIHEARAHGADMLLLIVAALE 147 (272)
T ss_dssp --CHHHHHHHHHHTTCSEEEEECCGGGHHHHHHHHHHHHHHCSSCEEEESCCCSHHHHHHHHHTTCSEEEEEGGGSC
T ss_pred CCCHHHHHHHHHHcCCCEEEEecChhhcCCCHHHHHHHHHhCCCCEEECccccCHHHHHHHHHcCCCEEEEecccCC
Confidence 4456777777666799998653111111123678999999999999998766 8888988885 999999876443
|
| >3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0 | Back alignment and structure |
|---|
Probab=96.04 E-value=0.019 Score=50.51 Aligned_cols=89 Identities=22% Similarity=0.150 Sum_probs=63.7
Q ss_pred chhhhhhHhhccCCC---CCCcccHHHHHHHhhhccccEEEe-cCCCCCCCCCHHHHHHHHhcCCCCEEEecCC-ChHhH
Q psy9039 154 VLVFTDIKKKHSSHA---ITADVDITETAKAASFFLSDGLII-TGNATGDPADVSQLMSVKNAVDLPILIGSGV-TSDNV 228 (251)
Q Consensus 154 i~i~a~v~~k~~~~~---~~~~~~i~~~a~~a~~~~~D~v~V-TG~~~g~~~~~~~l~~vr~~~~~PV~vG~GI-~~~~v 228 (251)
..+++.+.+.. |. +..+....++|+..+..|++++-| |=.. -...+.+.++++|+.+++||+...+| ++.++
T Consensus 59 ~~vIaE~KraS--PSkG~i~~~~dp~~~A~~y~~~GA~~IsVltd~~-~f~Gs~~~L~~ir~~v~lPVl~Kdfi~d~~qi 135 (272)
T 3tsm_A 59 FALIAEIKKAS--PSKGLIRPDFDPPALAKAYEEGGAACLSVLTDTP-SFQGAPEFLTAARQACSLPALRKDFLFDPYQV 135 (272)
T ss_dssp CEEEEEECSEE--TTTEESCSSCCHHHHHHHHHHTTCSEEEEECCST-TTCCCHHHHHHHHHTSSSCEEEESCCCSTHHH
T ss_pred ceEEEEeccCC--CCCCccCCCCCHHHHHHHHHHCCCCEEEEecccc-ccCCCHHHHHHHHHhcCCCEEECCccCCHHHH
Confidence 45666554331 21 234456778888777789999844 5322 22346789999999999999999888 68899
Q ss_pred HHhhc--CCEEEEeceEee
Q psy9039 229 EHYMT--ADALIIGSHFKQ 245 (251)
Q Consensus 229 ~~~~~--ADGvIVGS~~~~ 245 (251)
.++.. ||++.++.+...
T Consensus 136 ~ea~~~GAD~VlLi~a~L~ 154 (272)
T 3tsm_A 136 YEARSWGADCILIIMASVD 154 (272)
T ss_dssp HHHHHTTCSEEEEETTTSC
T ss_pred HHHHHcCCCEEEEcccccC
Confidence 88875 999999987654
|
| >1to3_A Putative aldolase YIHT; beta-alpha barrel, structural genomics, PSI, protein structure initiative; 2.70A {Salmonella typhimurium} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=95.92 E-value=0.01 Score=52.95 Aligned_cols=71 Identities=21% Similarity=0.288 Sum_probs=47.6
Q ss_pred HHHHHHHhhhccccEEEecCCCCCCCCCHHHHHHHHhc----CCCC-EEEecCCCh----HhHHHhhc--CCEEEEeceE
Q psy9039 175 ITETAKAASFFLSDGLIITGNATGDPADVSQLMSVKNA----VDLP-ILIGSGVTS----DNVEHYMT--ADALIIGSHF 243 (251)
Q Consensus 175 i~~~a~~a~~~~~D~v~VTG~~~g~~~~~~~l~~vr~~----~~~P-V~vG~GI~~----~~v~~~~~--ADGvIVGS~~ 243 (251)
+.+.++.+...|+|.+.+--...+ ..+.+.+.++.+. +.+| |++.||+++ ++++.++. |+|++||+++
T Consensus 179 v~~aa~~a~~lGaD~iKv~~~~~~-~g~~~~~~~vv~~~~~~~~~P~Vv~aGG~~~~~~~~~~~~a~~aGa~Gv~vGRaI 257 (304)
T 1to3_A 179 IIDAAKELGDSGADLYKVEMPLYG-KGARSDLLTASQRLNGHINMPWVILSSGVDEKLFPRAVRVAMEAGASGFLAGRAV 257 (304)
T ss_dssp HHHHHHHHTTSSCSEEEECCGGGG-CSCHHHHHHHHHHHHHTCCSCEEECCTTSCTTTHHHHHHHHHHTTCCEEEESHHH
T ss_pred HHHHHHHHHHcCCCEEEeCCCcCC-CCCHHHHHHHHHhccccCCCCeEEEecCCCHHHHHHHHHHHHHcCCeEEEEehHH
Confidence 333344444579999866332111 1145555555555 8899 999999976 56888875 9999999987
Q ss_pred eec
Q psy9039 244 KQG 246 (251)
Q Consensus 244 ~~~ 246 (251)
-+.
T Consensus 258 ~q~ 260 (304)
T 1to3_A 258 WSS 260 (304)
T ss_dssp HGG
T ss_pred hCc
Confidence 644
|
| >2p10_A MLL9387 protein; putative phosphonopyruvate hydrolase, structural genomics, J center for structural genomics, JCSG; HET: MSE; 2.15A {Mesorhizobium loti} SCOP: c.1.12.9 | Back alignment and structure |
|---|
Probab=95.91 E-value=0.012 Score=51.98 Aligned_cols=70 Identities=20% Similarity=0.235 Sum_probs=41.9
Q ss_pred HHHHHHhhhccccEEEe-----cCCCCCC--CCCH----HHHH----HHHhc-CCCCEEEec-CC-ChHhHHHhhc----
Q psy9039 176 TETAKAASFFLSDGLII-----TGNATGD--PADV----SQLM----SVKNA-VDLPILIGS-GV-TSDNVEHYMT---- 233 (251)
Q Consensus 176 ~~~a~~a~~~~~D~v~V-----TG~~~g~--~~~~----~~l~----~vr~~-~~~PV~vG~-GI-~~~~v~~~~~---- 233 (251)
.+.++.....++|.+++ ||..-|. ..+. +.++ .+|+. .++-|++++ || +++++..+++
T Consensus 173 ~eeA~amA~agpDiI~~h~glT~gglIG~~~avs~~~~~e~i~~i~~a~~~vnpdvivLc~gGpIstpeDv~~~l~~t~G 252 (286)
T 2p10_A 173 PEDAVAMAKAGADILVCHMGLTTGGAIGARSGKSMDDCVSLINECIEAARTIRDDIIILSHGGPIANPEDARFILDSCQG 252 (286)
T ss_dssp HHHHHHHHHHTCSEEEEECSCC---------CCCHHHHHHHHHHHHHHHHHHCSCCEEEEESTTCCSHHHHHHHHHHCTT
T ss_pred HHHHHHHHHcCCCEEEECCCCCCCCcccCCCcccHHHhHHHHHHHHHHHHHhCCCcEEEecCCCCCCHHHHHHHHhcCCC
Confidence 34445444569999876 2322221 1122 2333 33333 267788877 89 6999998884
Q ss_pred CCEEEEeceEee
Q psy9039 234 ADALIIGSHFKQ 245 (251)
Q Consensus 234 ADGvIVGS~~~~ 245 (251)
+||++.+|++.+
T Consensus 253 ~~G~~gASsier 264 (286)
T 2p10_A 253 CHGFYGASSMER 264 (286)
T ss_dssp CCEEEESHHHHH
T ss_pred ccEEEeehhhhc
Confidence 899999998764
|
| >1ea0_A Glutamate synthase [NADPH] large chain; oxidoreductase, iron sulphur flavoprotein; HET: OMT FMN AKG; 3.0A {Azospirillum brasilense} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB: 2vdc_A* | Back alignment and structure |
|---|
Probab=95.89 E-value=0.0072 Score=63.84 Aligned_cols=72 Identities=19% Similarity=0.195 Sum_probs=53.7
Q ss_pred cHHHHHHHhhhccccEEEecCCCCCC------------CCCHHHHHHHHhcC-------CCCEEEecCC-ChHhHHHhhc
Q psy9039 174 DITETAKAASFFLSDGLIITGNATGD------------PADVSQLMSVKNAV-------DLPILIGSGV-TSDNVEHYMT 233 (251)
Q Consensus 174 ~i~~~a~~a~~~~~D~v~VTG~~~g~------------~~~~~~l~~vr~~~-------~~PV~vG~GI-~~~~v~~~~~ 233 (251)
.+...|+.+...|+|++.|+|...|. .+....|.++++.. ++||++.||| |..++.+++.
T Consensus 1005 gi~~~A~~a~~AGAD~IvVsG~eGGTgasp~~~~~~~G~Pt~~aL~ev~~al~~~glr~~VpVIAdGGIrtG~DVakALa 1084 (1479)
T 1ea0_A 1005 GIGTIAAGVAKANADIILISGNSGGTGASPQTSIKFAGLPWEMGLSEVHQVLTLNRLRHRVRLRTDGGLKTGRDIVIAAM 1084 (1479)
T ss_dssp THHHHHHHHHHTTCSEEEEECTTCCCSSEETTHHHHSCCCHHHHHHHHHHHHHTTTCTTTSEEEEESSCCSHHHHHHHHH
T ss_pred ChHHHHHHHHHcCCcEEEEcCCCCCCCCCchhhhcCCchhHHHHHHHHHHHHHHcCCCCCceEEEECCCCCHHHHHHHHH
Confidence 34556666666799999999985442 12234566666542 6999999999 7899888885
Q ss_pred --CCEEEEeceEee
Q psy9039 234 --ADALIIGSHFKQ 245 (251)
Q Consensus 234 --ADGvIVGS~~~~ 245 (251)
||+|.+||+|..
T Consensus 1085 LGAdaV~iGTafL~ 1098 (1479)
T 1ea0_A 1085 LGAEEFGIGTASLI 1098 (1479)
T ss_dssp TTCSEEECCHHHHH
T ss_pred cCCCeeeEcHHHHH
Confidence 999999999854
|
| >3glc_A Aldolase LSRF; TIM barrel, lyase, schiff base; HET: R5P; 2.50A {Escherichia coli} PDB: 3gnd_A* 3gkf_O | Back alignment and structure |
|---|
Probab=95.85 E-value=0.0076 Score=53.61 Aligned_cols=64 Identities=13% Similarity=0.134 Sum_probs=46.1
Q ss_pred HHHHHHHhhhccccEEEecCCCCCCCCCHHHHHHHHhcCCCCEEEecCCC-h-----HhHHHhhc--CCEEEEeceEee
Q psy9039 175 ITETAKAASFFLSDGLIITGNATGDPADVSQLMSVKNAVDLPILIGSGVT-S-----DNVEHYMT--ADALIIGSHFKQ 245 (251)
Q Consensus 175 i~~~a~~a~~~~~D~v~VTG~~~g~~~~~~~l~~vr~~~~~PV~vG~GI~-~-----~~v~~~~~--ADGvIVGS~~~~ 245 (251)
+...++.|...|+|.+-++= ++ +.++++++.+++||++-||++ + +++++++. |+|++||+.+.+
T Consensus 191 i~~aariA~elGAD~VKt~~--t~-----e~~~~vv~~~~vPVv~~GG~~~~~~~~l~~v~~ai~aGA~Gv~vGRnI~q 262 (295)
T 3glc_A 191 FSLATRIAAEMGAQIIKTYY--VE-----KGFERIVAGCPVPIVIAGGKKLPEREALEMCWQAIDQGASGVDMGRNIFQ 262 (295)
T ss_dssp HHHHHHHHHHTTCSEEEEEC--CT-----TTHHHHHHTCSSCEEEECCSCCCHHHHHHHHHHHHHTTCSEEEESHHHHT
T ss_pred HHHHHHHHHHhCCCEEEeCC--CH-----HHHHHHHHhCCCcEEEEECCCCCHHHHHHHHHHHHHhCCeEEEeHHHHhc
Confidence 34445555567999987762 11 236778888899999999995 3 35666665 999999998754
|
| >2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1 | Back alignment and structure |
|---|
Probab=95.83 E-value=0.0029 Score=59.79 Aligned_cols=59 Identities=19% Similarity=0.389 Sum_probs=42.8
Q ss_pred cccEEEecCCCCCC-----------CCC---HHHHHHHHhcCCCCEEEecCC-ChHhHHHhhc--CCEEEEeceEee
Q psy9039 186 LSDGLIITGNATGD-----------PAD---VSQLMSVKNAVDLPILIGSGV-TSDNVEHYMT--ADALIIGSHFKQ 245 (251)
Q Consensus 186 ~~D~v~VTG~~~g~-----------~~~---~~~l~~vr~~~~~PV~vG~GI-~~~~v~~~~~--ADGvIVGS~~~~ 245 (251)
|+|++.| |...+. .+. +..++++.+..++||++.||| +..++.+++. ||+|.+||.|..
T Consensus 287 G~d~v~v-g~g~g~~~~~r~~~~~g~~~~~~l~~~~~~~~~~~vpVia~GGi~~~~di~kalalGA~~v~~g~~~~~ 362 (486)
T 2cu0_A 287 FADAVKV-GIGPGSICTTRIVAGVGVPQITAVAMVADRAQEYGLYVIADGGIRYSGDIVKAIAAGADAVMLGNLLAG 362 (486)
T ss_dssp TSSEEEE-CSSCSTTBCHHHHTCCCCCHHHHHHHHHHHHHHHTCEEEEESCCCSHHHHHHHHHTTCSEEEESTTTTT
T ss_pred CCCeEEE-eeeeccceeeeEEeecCcchHHHHHHHHHHHHHcCCcEEecCCCCCHHHHHHHHHcCCCceeeChhhhc
Confidence 9999988 432211 111 234455555568999999999 7888888885 999999999873
|
| >1mzh_A Deoxyribose-phosphate aldolase; alpha-beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Aquifex aeolicus} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=95.82 E-value=0.021 Score=48.53 Aligned_cols=62 Identities=13% Similarity=0.180 Sum_probs=46.0
Q ss_pred cHHHHHHHhhhccccEEEec-CCCCCCCCCHHHHHHHHhcC--CCCEEEecCC-ChHhHHHhhc--CCE
Q psy9039 174 DITETAKAASFFLSDGLIIT-GNATGDPADVSQLMSVKNAV--DLPILIGSGV-TSDNVEHYMT--ADA 236 (251)
Q Consensus 174 ~i~~~a~~a~~~~~D~v~VT-G~~~g~~~~~~~l~~vr~~~--~~PV~vG~GI-~~~~v~~~~~--ADG 236 (251)
.+.+.++.+...|+|++-++ |..+| ..+++.++.+++.+ ++||++.||| |++++.+++. ||-
T Consensus 133 ~~~~~a~~a~eaGad~I~tstg~~~g-ga~~~~i~~v~~~v~~~ipVia~GGI~t~~da~~~l~aGA~~ 200 (225)
T 1mzh_A 133 EIKKAVEICIEAGADFIKTSTGFAPR-GTTLEEVRLIKSSAKGRIKVKASGGIRDLETAISMIEAGADR 200 (225)
T ss_dssp HHHHHHHHHHHHTCSEEECCCSCSSS-CCCHHHHHHHHHHHTTSSEEEEESSCCSHHHHHHHHHTTCSE
T ss_pred HHHHHHHHHHHhCCCEEEECCCCCCC-CCCHHHHHHHHHHhCCCCcEEEECCCCCHHHHHHHHHhCchH
Confidence 35566666666799999433 33222 24678888888876 7999999999 7899999885 994
|
| >1ofd_A Ferredoxin-dependent glutamate synthase 2; oxidoreductase, complex enzyme, substrate channeling, amidotransferase, flavoprotein, iron-sulphur; HET: FMN AKG; 2.00A {Synechocystis SP} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB: 1llz_A* 1lm1_A* 1llw_A* 1ofe_A* | Back alignment and structure |
|---|
Probab=95.81 E-value=0.0078 Score=63.73 Aligned_cols=72 Identities=18% Similarity=0.107 Sum_probs=53.3
Q ss_pred cHHHHHHHhhhccccEEEecCCCCCC------------CCCHHHHHHHHhcC-------CCCEEEecCC-ChHhHHHhhc
Q psy9039 174 DITETAKAASFFLSDGLIITGNATGD------------PADVSQLMSVKNAV-------DLPILIGSGV-TSDNVEHYMT 233 (251)
Q Consensus 174 ~i~~~a~~a~~~~~D~v~VTG~~~g~------------~~~~~~l~~vr~~~-------~~PV~vG~GI-~~~~v~~~~~ 233 (251)
.+...|+.+...|+|++.|+|...|. .+....|.++++.. ++||++.||| |..++.+++.
T Consensus 1040 gi~~~A~~a~kAGAD~IvVsG~eGGTgasp~~~~~~~GlPt~~aL~ev~~al~~~glr~~IpVIAdGGIrtG~DVakALa 1119 (1520)
T 1ofd_A 1040 GIGTIAAGVAKANADIIQISGHDGGTGASPLSSIKHAGSPWELGVTEVHRVLMENQLRDRVLLRADGGLKTGWDVVMAAL 1119 (1520)
T ss_dssp THHHHHHHHHHTTCSEEEEECTTCCCSSEEHHHHHHBCCCHHHHHHHHHHHHHHTTCGGGCEEEEESSCCSHHHHHHHHH
T ss_pred ChHHHHHHHHHcCCCEEEEeCCCCccCCCcchhhcCCchhHHHHHHHHHHHHHhcCCCCCceEEEECCCCCHHHHHHHHH
Confidence 34556666666799999999986432 12235566665532 6999999999 7899888885
Q ss_pred --CCEEEEeceEee
Q psy9039 234 --ADALIIGSHFKQ 245 (251)
Q Consensus 234 --ADGvIVGS~~~~ 245 (251)
||+|.+||+|..
T Consensus 1120 LGAdaV~iGTafL~ 1133 (1520)
T 1ofd_A 1120 MGAEEYGFGSIAMI 1133 (1520)
T ss_dssp TTCSEEECSHHHHH
T ss_pred cCCCeeEEcHHHHH
Confidence 999999999854
|
| >4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B* | Back alignment and structure |
|---|
Probab=95.73 E-value=0.045 Score=52.36 Aligned_cols=39 Identities=13% Similarity=0.400 Sum_probs=30.9
Q ss_pred HHHHHhcCCCCEEEecCC-ChHhHHHhhc--CCEEEEeceEe
Q psy9039 206 LMSVKNAVDLPILIGSGV-TSDNVEHYMT--ADALIIGSHFK 244 (251)
Q Consensus 206 l~~vr~~~~~PV~vG~GI-~~~~v~~~~~--ADGvIVGS~~~ 244 (251)
..+..+...+|||+=||| ++.++.+.+. ||.|.+||.|-
T Consensus 376 ~a~~a~~~~vpvIADGGI~~sGDi~KAlaaGAd~VMlGsllA 417 (556)
T 4af0_A 376 VAEFASRFGIPCIADGGIGNIGHIAKALALGASAVMMGGLLA 417 (556)
T ss_dssp HHHHHGGGTCCEEEESCCCSHHHHHHHHHTTCSEEEESTTTT
T ss_pred HHHHHHHcCCCEEecCCcCcchHHHHHhhcCCCEEEEchhhc
Confidence 334444457999999999 6888888885 99999999773
|
| >2qr6_A IMP dehydrogenase/GMP reductase; NP_599840.1, G reductase domain, structural genomics, joint center for STR genomics, JCSG; HET: MSE; 1.50A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=95.70 E-value=0.022 Score=52.13 Aligned_cols=67 Identities=22% Similarity=0.308 Sum_probs=46.5
Q ss_pred HHHHHHHhhhccccEEEecCCC----CCCCC-CHHHHHHHHhcCCCCEEEecCCChHhHHHhhc--CCEEEEec
Q psy9039 175 ITETAKAASFFLSDGLIITGNA----TGDPA-DVSQLMSVKNAVDLPILIGSGVTSDNVEHYMT--ADALIIGS 241 (251)
Q Consensus 175 i~~~a~~a~~~~~D~v~VTG~~----~g~~~-~~~~l~~vr~~~~~PV~vG~GI~~~~v~~~~~--ADGvIVGS 241 (251)
..+.++.....++|.+.+.+.. ...+. .+..+.++++.+++||++|+..|++.+..+.+ ||+++||+
T Consensus 167 ~~e~a~~~~~agad~i~i~~~~~~~~~~~~~~~~~~i~~l~~~~~~pvi~ggi~t~e~a~~~~~~Gad~i~vg~ 240 (393)
T 2qr6_A 167 VREIAPIVIKAGADLLVIQGTLISAEHVNTGGEALNLKEFIGSLDVPVIAGGVNDYTTALHMMRTGAVGIIVGG 240 (393)
T ss_dssp HHHHHHHHHHTTCSEEEEECSSCCSSCCCC-----CHHHHHHHCSSCEEEECCCSHHHHHHHHTTTCSEEEESC
T ss_pred HHHHHHHHHHCCCCEEEEeCCccccccCCCcccHHHHHHHHHhcCCCEEECCcCCHHHHHHHHHcCCCEEEECC
Confidence 3444444444689999887643 11121 44568889988999999976669999998886 99999976
|
| >1aj0_A DHPS, dihydropteroate synthase; antibiotic, resistance, transferase, folate, biosynthesis; HET: PH2 SAN; 2.00A {Escherichia coli} SCOP: c.1.21.1 PDB: 1aj2_A* 1ajz_A 3tyz_A* 3tyu_A* 3tzf_A* 3tzn_A | Back alignment and structure |
|---|
Probab=95.49 E-value=0.064 Score=47.25 Aligned_cols=98 Identities=14% Similarity=0.087 Sum_probs=63.1
Q ss_pred HHHHhhCCCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHHHHHHHHcC
Q psy9039 36 AEIRKVLPPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQAAG 115 (251)
Q Consensus 36 ~~a~~~a~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g 115 (251)
+.+++.++.+++.|+ |.|-|-=+-.-|.+.++. ..+=.+.+..+++.+++.++ +|+.+.++.. ..+..|...|
T Consensus 38 ~~a~~~a~~~v~~GA-diIDIGgestrPga~~v~-~~eE~~rv~pvi~~l~~~~~--~piSIDT~~~---~va~aAl~aG 110 (282)
T 1aj0_A 38 IDAVKHANLMINAGA-TIIDVGGESTRPGAAEVS-VEEELQRVIPVVEAIAQRFE--VWISVDTSKP---EVIRESAKVG 110 (282)
T ss_dssp HHHHHHHHHHHHHTC-SEEEEESSCCSTTCCCCC-HHHHHHHHHHHHHHHHHHCC--CEEEEECCCH---HHHHHHHHTT
T ss_pred HHHHHHHHHHHHCCC-CEEEECCCcCCCCCCcCC-HHHHHHHHHHHHHHHHhhcC--CeEEEeCCCH---HHHHHHHHcC
Confidence 334444456778899 999874444457766642 23445556778899988877 7999999863 3345555568
Q ss_pred ccceecccccccccCCCceeecCcchhHHHHHhcCCC
Q psy9039 116 LDFIRAESFVFGHMADEGLMNAQAGPLLRYRKQIGAD 152 (251)
Q Consensus 116 ~~Fir~~~~~~~~~~~~Gli~~da~e~~~~r~~l~~~ 152 (251)
++.+-. ..|. ...+..+..+++++.
T Consensus 111 a~iINd---------vsg~---~d~~~~~~~a~~~~~ 135 (282)
T 1aj0_A 111 AHIIND---------IRSL---SEPGALEAAAETGLP 135 (282)
T ss_dssp CCEEEE---------TTTT---CSTTHHHHHHHHTCC
T ss_pred CCEEEE---------CCCC---CCHHHHHHHHHhCCe
Confidence 888774 2222 223567777788773
|
| >1o4u_A Type II quinolic acid phosphoribosyltransferase; structural genomics, joint center for structural genomics, J protein structure initiative; 2.50A {Thermotoga maritima} SCOP: c.1.17.1 d.41.2.1 | Back alignment and structure |
|---|
Probab=95.44 E-value=0.018 Score=50.93 Aligned_cols=62 Identities=16% Similarity=0.196 Sum_probs=44.8
Q ss_pred HHHHHhhhccccEEEecCCCCCCCCCHHHHHHHHhcC-----CCCEEEecCCChHhHHHhhc--CCEEEEeceEe
Q psy9039 177 ETAKAASFFLSDGLIITGNATGDPADVSQLMSVKNAV-----DLPILIGSGVTSDNVEHYMT--ADALIIGSHFK 244 (251)
Q Consensus 177 ~~a~~a~~~~~D~v~VTG~~~g~~~~~~~l~~vr~~~-----~~PV~vG~GI~~~~v~~~~~--ADGvIVGS~~~ 244 (251)
+.++.|...|+|.+.+-- .+.+.++++.+.. .+|+.+.||||++|++++.. +|++.|||.+.
T Consensus 204 eea~eA~~aGaD~I~LDn------~~~e~l~~av~~l~~~~~~v~ieASGGIt~eni~~~a~tGVD~IsvGslt~ 272 (285)
T 1o4u_A 204 EDALRAVEAGADIVMLDN------LSPEEVKDISRRIKDINPNVIVEVSGGITEENVSLYDFETVDVISSSRLTL 272 (285)
T ss_dssp HHHHHHHHTTCSEEEEES------CCHHHHHHHHHHHHHHCTTSEEEEEECCCTTTGGGGCCTTCCEEEEGGGTS
T ss_pred HHHHHHHHcCCCEEEECC------CCHHHHHHHHHHhhccCCCceEEEECCCCHHHHHHHHHcCCCEEEEeHHHc
Confidence 445666657899987643 2334444333322 68999999999999999997 99999999654
|
| >1x1o_A Nicotinate-nucleotide pyrophosphorylase; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=95.03 E-value=0.034 Score=49.13 Aligned_cols=60 Identities=13% Similarity=0.130 Sum_probs=43.8
Q ss_pred HHHHhhhccccEEEecCCCCCCCCCHHHHHHHHhcC--CCCEEEecCCChHhHHHhhc--CCEEEEeceE
Q psy9039 178 TAKAASFFLSDGLIITGNATGDPADVSQLMSVKNAV--DLPILIGSGVTSDNVEHYMT--ADALIIGSHF 243 (251)
Q Consensus 178 ~a~~a~~~~~D~v~VTG~~~g~~~~~~~l~~vr~~~--~~PV~vG~GI~~~~v~~~~~--ADGvIVGS~~ 243 (251)
.++.|...|+|++.+--. ..+.++++.+.. ++|+.+.||||++|++++.. +|++.|||.+
T Consensus 208 ea~eA~~aGaD~I~ld~~------~~~~~k~av~~v~~~ipi~AsGGIt~eni~~~a~tGvD~IsVgs~~ 271 (286)
T 1x1o_A 208 ELEEALEAGADLILLDNF------PLEALREAVRRVGGRVPLEASGNMTLERAKAAAEAGVDYVSVGALT 271 (286)
T ss_dssp HHHHHHHHTCSEEEEESC------CHHHHHHHHHHHTTSSCEEEESSCCHHHHHHHHHHTCSEEECTHHH
T ss_pred HHHHHHHcCCCEEEECCC------CHHHHHHHHHHhCCCCeEEEEcCCCHHHHHHHHHcCCCEEEEcHHH
Confidence 345565668999866432 234444444333 69999999999999999997 9999998854
|
| >3tr9_A Dihydropteroate synthase; biosynthesis of cofactors, prosthetic groups, and carriers, transferase; HET: PT1; 1.90A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=94.90 E-value=0.083 Score=47.29 Aligned_cols=96 Identities=16% Similarity=0.138 Sum_probs=56.9
Q ss_pred HHHhhCCCCcCCCCccEEEEeecCCCCccc----cCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHHHHHHH
Q psy9039 37 EIRKVLPPSVPVGVQHGVIVENMHDVPYVL----EAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQ 112 (251)
Q Consensus 37 ~a~~~a~~l~~~Gv~D~i~ieN~~~~Pf~~----p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~ 112 (251)
.+++.++.+++.|+ |.|-|-=+-..|.+. ++ +..+=.+-+..+++++++.++ +|+.|..+... + +..|.
T Consensus 50 ~al~~A~~~v~~GA-dIIDIGgeSTrPga~~~~~~V-~~~eE~~Rv~pvI~~l~~~~~--vpISIDT~~~~-V--a~aAl 122 (314)
T 3tr9_A 50 SALRTAEKMVDEGA-DILDIGGEATNPFVDIKTDSP-STQIELDRLLPVIDAIKKRFP--QLISVDTSRPR-V--MREAV 122 (314)
T ss_dssp HHHHHHHHHHHTTC-SEEEEECCCSCTTC-----CH-HHHHHHHHHHHHHHHHHHHCC--SEEEEECSCHH-H--HHHHH
T ss_pred HHHHHHHHHHHCCC-CEEEECCCCCCCCcccccCCC-CHHHHHHHHHHHHHHHHhhCC--CeEEEeCCCHH-H--HHHHH
Confidence 34444566788999 999873344456554 32 111222224456788888777 89999998633 4 44444
Q ss_pred HcCccceecccccccccCCCceeecCcchhHHHHHhcCC
Q psy9039 113 AAGLDFIRAESFVFGHMADEGLMNAQAGPLLRYRKQIGA 151 (251)
Q Consensus 113 a~g~~Fir~~~~~~~~~~~~Gli~~da~e~~~~r~~l~~ 151 (251)
..|++.+-. ..|.- ..+..+..+++++
T Consensus 123 ~aGa~iIND---------Vsg~~---~~~m~~v~a~~g~ 149 (314)
T 3tr9_A 123 NTGADMIND---------QRALQ---LDDALTTVSALKT 149 (314)
T ss_dssp HHTCCEEEE---------TTTTC---STTHHHHHHHHTC
T ss_pred HcCCCEEEE---------CCCCC---chHHHHHHHHhCC
Confidence 458888764 11211 1256777777876
|
| >2b7n_A Probable nicotinate-nucleotide pyrophosphorylase; quinolinate phosphoribosyltransferase, quinolinic acid, HELI pylori, transferase; HET: NTM; 2.30A {Helicobacter pylori} PDB: 2b7p_A* 2b7q_A* | Back alignment and structure |
|---|
Probab=94.76 E-value=0.019 Score=50.37 Aligned_cols=60 Identities=15% Similarity=0.169 Sum_probs=43.9
Q ss_pred HHHhhhccccEEEecCCCCCCCCCHHHHHHHHhcC-----CCCEEEecCCChHhHHHhhc--CCEEEEeceEe
Q psy9039 179 AKAASFFLSDGLIITGNATGDPADVSQLMSVKNAV-----DLPILIGSGVTSDNVEHYMT--ADALIIGSHFK 244 (251)
Q Consensus 179 a~~a~~~~~D~v~VTG~~~g~~~~~~~l~~vr~~~-----~~PV~vG~GI~~~~v~~~~~--ADGvIVGS~~~ 244 (251)
++.+...|+|.+.+-- .+++.++++++.. ++|+.+.||||++|++++.. +|++.|||.+.
T Consensus 195 ~~~A~~aGaD~I~ld~------~~~~~l~~~v~~l~~~~~~~~i~AsGGI~~~ni~~~~~aGaD~i~vGs~i~ 261 (273)
T 2b7n_A 195 AKNAMNAGADIVMCDN------LSVLETKEIAAYRDAHYPFVLLEASGNISLESINAYAKSGVDAISVGALIH 261 (273)
T ss_dssp HHHHHHHTCSEEEEET------CCHHHHHHHHHHHHHHCTTCEEEEESSCCTTTHHHHHTTTCSEEECTHHHH
T ss_pred HHHHHHcCCCEEEECC------CCHHHHHHHHHHhhccCCCcEEEEECCCCHHHHHHHHHcCCcEEEEcHHhc
Confidence 4555556899987631 2344555433332 48999999999999999997 99999999764
|
| >2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=94.65 E-value=0.06 Score=43.30 Aligned_cols=69 Identities=12% Similarity=0.111 Sum_probs=49.6
Q ss_pred CcccHHHHHHHhhhccccEEEecCCCCCCCCCH-HHHHHHHhcC--CCCEEEecCCChHhHHHhhc--CCEEEE
Q psy9039 171 ADVDITETAKAASFFLSDGLIITGNATGDPADV-SQLMSVKNAV--DLPILIGSGVTSDNVEHYMT--ADALII 239 (251)
Q Consensus 171 ~~~~i~~~a~~a~~~~~D~v~VTG~~~g~~~~~-~~l~~vr~~~--~~PV~vG~GI~~~~v~~~~~--ADGvIV 239 (251)
.+.+.+++++.+....+|.+++|...+...+.. +.++.+|+.. ++||++||-+..+....+.. +|+++.
T Consensus 54 ~~~p~e~lv~aa~~~~~diV~lS~~~~~~~~~~~~~i~~L~~~g~~~i~v~vGG~~~~~~~~~l~~~G~d~v~~ 127 (161)
T 2yxb_A 54 LRQTPEQVAMAAVQEDVDVIGVSILNGAHLHLMKRLMAKLRELGADDIPVVLGGTIPIPDLEPLRSLGIREIFL 127 (161)
T ss_dssp SBCCHHHHHHHHHHTTCSEEEEEESSSCHHHHHHHHHHHHHHTTCTTSCEEEEECCCHHHHHHHHHTTCCEEEC
T ss_pred CCCCHHHHHHHHHhcCCCEEEEEeechhhHHHHHHHHHHHHhcCCCCCEEEEeCCCchhcHHHHHHCCCcEEEC
Confidence 446788888888778999999998765433333 5567788763 69999998886666544333 998664
|
| >2jbm_A Nicotinate-nucleotide pyrophosphorylase; NAD, enzyme, metabolism, transferase, polymorphism, glycosyltransferase, pyridine nucleotide biosynthesis; HET: SRT; 2.0A {Homo sapiens} PDB: 3lar_A | Back alignment and structure |
|---|
Probab=94.51 E-value=0.025 Score=50.34 Aligned_cols=64 Identities=17% Similarity=0.263 Sum_probs=45.2
Q ss_pred cHHHHHHHhhhccccEEEecCCCCCCCCCHHHHHHHHhcC-----CCCEEEecCCChHhHHHhhc--CCEEEEeceEe
Q psy9039 174 DITETAKAASFFLSDGLIITGNATGDPADVSQLMSVKNAV-----DLPILIGSGVTSDNVEHYMT--ADALIIGSHFK 244 (251)
Q Consensus 174 ~i~~~a~~a~~~~~D~v~VTG~~~g~~~~~~~l~~vr~~~-----~~PV~vG~GI~~~~v~~~~~--ADGvIVGS~~~ 244 (251)
++++ ++.+...|+|.+.+.- .+++.++++++.. ++|+.+.||||++|++++.. +|++.|||.+.
T Consensus 206 tlee-~~~A~~aGaD~I~ld~------~~~~~l~~~v~~l~~~~~~~~I~ASGGIt~~ni~~~~~aGaD~i~vGs~i~ 276 (299)
T 2jbm_A 206 SLQE-AVQAAEAGADLVLLDN------FKPEELHPTATVLKAQFPSVAVEASGGITLDNLPQFCGPHIDVISMGMLTQ 276 (299)
T ss_dssp SHHH-HHHHHHTTCSEEEEES------CCHHHHHHHHHHHHHHCTTSEEEEESSCCTTTHHHHCCTTCCEEECTHHHH
T ss_pred CHHH-HHHHHHcCCCEEEECC------CCHHHHHHHHHHhhccCCCeeEEEECCCCHHHHHHHHHCCCCEEEEChhhc
Confidence 4433 4555556899987732 1244454433332 48999999999999999996 99999999653
|
| >1qap_A Quinolinic acid phosphoribosyltransferase; glycosyltransferase, NAD biosynthesis; HET: NTM; 2.80A {Salmonella typhimurium} SCOP: c.1.17.1 d.41.2.1 | Back alignment and structure |
|---|
Probab=94.45 E-value=0.075 Score=47.14 Aligned_cols=63 Identities=14% Similarity=0.230 Sum_probs=48.1
Q ss_pred cHHHHHHHhhhccccEEEecCCCCCCCCCHHHHHHHHhcC--CCCEEEecCCChHhHHHhhc--CCEEEEeceE
Q psy9039 174 DITETAKAASFFLSDGLIITGNATGDPADVSQLMSVKNAV--DLPILIGSGVTSDNVEHYMT--ADALIIGSHF 243 (251)
Q Consensus 174 ~i~~~a~~a~~~~~D~v~VTG~~~g~~~~~~~l~~vr~~~--~~PV~vG~GI~~~~v~~~~~--ADGvIVGS~~ 243 (251)
++++ ++.+...|+|.+.+. ..+.+.++++++.. ++|+.+.||||.+|++++.. +|++.|||.+
T Consensus 217 tlee-~~eA~~aGaD~I~ld------~~~~e~l~~~v~~~~~~~~I~ASGGIt~~~i~~~a~~GvD~isvGsli 283 (296)
T 1qap_A 217 NLDE-LDDALKAGADIIMLD------NFNTDQMREAVKRVNGQARLEVSGNVTAETLREFAETGVDFISVGALT 283 (296)
T ss_dssp SHHH-HHHHHHTTCSEEEES------SCCHHHHHHHHHTTCTTCCEEECCCSCHHHHHHHHHTTCSEEECSHHH
T ss_pred CHHH-HHHHHHcCCCEEEEC------CCCHHHHHHHHHHhCCCCeEEEECCCCHHHHHHHHHcCCCEEEEeHHH
Confidence 4433 455555689998773 24567777666665 58999999999999999996 9999999954
|
| >1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1 | Back alignment and structure |
|---|
Probab=94.31 E-value=0.067 Score=50.17 Aligned_cols=66 Identities=17% Similarity=0.253 Sum_probs=48.7
Q ss_pred HHHHHHHhhhccccEEEecCCCCCCCC-CHHHHHHHHhcC-CCCEEEecCCChHhHHHhhc--CCEEEEec
Q psy9039 175 ITETAKAASFFLSDGLIITGNATGDPA-DVSQLMSVKNAV-DLPILIGSGVTSDNVEHYMT--ADALIIGS 241 (251)
Q Consensus 175 i~~~a~~a~~~~~D~v~VTG~~~g~~~-~~~~l~~vr~~~-~~PV~vG~GI~~~~v~~~~~--ADGvIVGS 241 (251)
..+.++.+...|+|++++++.. +... .++.++++++.+ ++|++.|+..+.+.+..++. ||++.||.
T Consensus 234 ~~~~a~~l~~~G~d~ivi~~a~-g~~~~~~~~i~~l~~~~p~~pvi~G~v~t~~~a~~~~~~Gad~I~vg~ 303 (491)
T 1zfj_A 234 TFERAEALFEAGADAIVIDTAH-GHSAGVLRKIAEIRAHFPNRTLIAGNIATAEGARALYDAGVDVVKVGI 303 (491)
T ss_dssp HHHHHHHHHHHTCSEEEECCSC-TTCHHHHHHHHHHHHHCSSSCEEEEEECSHHHHHHHHHTTCSEEEECS
T ss_pred HHHHHHHHHHcCCCeEEEeeec-CcchhHHHHHHHHHHHCCCCcEeCCCccCHHHHHHHHHcCCCEEEECc
Confidence 3455566655799999998853 3322 247788899887 89999555558888888886 99999983
|
| >3c2e_A Nicotinate-nucleotide pyrophosphorylase; qprtase, prtase, BNA6, mechanism, cytoplasm, glycosyltransferase, nucleus; 1.90A {Saccharomyces cerevisiae} PDB: 3c2f_A* 3c2o_A* 3c2v_A* 3c2r_A* | Back alignment and structure |
|---|
Probab=94.09 E-value=0.025 Score=50.12 Aligned_cols=60 Identities=18% Similarity=0.185 Sum_probs=32.2
Q ss_pred HHHhhhccccEEEecCCCCCCCCCHHHHHHHHhcC--------CCCEEEecCCChHhHHHhhc--CCEEEEeceEe
Q psy9039 179 AKAASFFLSDGLIITGNATGDPADVSQLMSVKNAV--------DLPILIGSGVTSDNVEHYMT--ADALIIGSHFK 244 (251)
Q Consensus 179 a~~a~~~~~D~v~VTG~~~g~~~~~~~l~~vr~~~--------~~PV~vG~GI~~~~v~~~~~--ADGvIVGS~~~ 244 (251)
++.+...|+|++.+.- . +++.++++++.. ++|+.+.||||++|++++.. +|++.|||.+.
T Consensus 212 ~~~A~~aGaD~I~ld~---~---~~~~l~~~v~~l~~~~~g~~~v~I~ASGGIt~~ni~~~~~~GvD~i~vGs~i~ 281 (294)
T 3c2e_A 212 ATEAIEAGADVIMLDN---F---KGDGLKMCAQSLKNKWNGKKHFLLECSGGLNLDNLEEYLCDDIDIYSTSSIHQ 281 (294)
T ss_dssp HHHHHHHTCSEEECCC---------------------------CCEEEEECCCCC------CCCSCSEEECGGGTS
T ss_pred HHHHHHcCCCEEEECC---C---CHHHHHHHHHHhcccccCCCCeEEEEECCCCHHHHHHHHHcCCCEEEEechhc
Confidence 3444446899987621 2 233344333332 38999999999999999996 99999999864
|
| >3tjl_A NADPH dehydrogenase; OLD yellow enzyme, flavin mononucleotide, TIM barrel, NADPH oxidoreductase, enone reductase; HET: FMN; 1.50A {Scheffersomyces stipitis cbs 6054} PDB: 3upw_A* 4df2_A* | Back alignment and structure |
|---|
Probab=94.05 E-value=0.034 Score=51.55 Aligned_cols=43 Identities=9% Similarity=-0.006 Sum_probs=31.6
Q ss_pred HHHHHHhcCCCCEEEecCCC-hHh----HHHhh-c-CCEEEEeceEeecC
Q psy9039 205 QLMSVKNAVDLPILIGSGVT-SDN----VEHYM-T-ADALIIGSHFKQGG 247 (251)
Q Consensus 205 ~l~~vr~~~~~PV~vG~GI~-~~~----v~~~~-~-ADGvIVGS~~~~~g 247 (251)
.+..+|+..+.||++.|||+ +++ +.+.+ . ||+|.+|..|+-|-
T Consensus 304 ~~~~ir~~~~~PvI~~Ggi~~~~dA~~~i~~~~~g~aDlVa~GR~~iaNP 353 (407)
T 3tjl_A 304 DNEFVSKIWKGVILKAGNYSYDAPEFKTLKEDIADKRTLVGFSRYFTSNP 353 (407)
T ss_dssp CSHHHHHHCCSEEEEESCGGGGTTTTHHHHHHHTTSSEEEECSHHHHHCT
T ss_pred HHHHHHHHhCCCEEecCCCCCHHHHHHHHHhhccCCCeEEEeChhhhhCc
Confidence 35677778889999999996 442 33323 4 99999999887653
|
| >1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1 | Back alignment and structure |
|---|
Probab=93.97 E-value=0.079 Score=49.83 Aligned_cols=65 Identities=25% Similarity=0.340 Sum_probs=49.4
Q ss_pred HHHHHHhhhccccEEEecCCCCCCCC-CHHHHHHHHhcC-CCCEEEecCCChHhHHHhhc--CCEEEEec
Q psy9039 176 TETAKAASFFLSDGLIITGNATGDPA-DVSQLMSVKNAV-DLPILIGSGVTSDNVEHYMT--ADALIIGS 241 (251)
Q Consensus 176 ~~~a~~a~~~~~D~v~VTG~~~g~~~-~~~~l~~vr~~~-~~PV~vG~GI~~~~v~~~~~--ADGvIVGS 241 (251)
.+.++.+...|+|++.+.... |... .++.++++|+.+ ++||++|++.+.+.+..+.+ +|++.||.
T Consensus 239 ~~~a~~l~~aGvd~v~i~~~~-G~~~~~~e~i~~i~~~~p~~pvi~g~~~t~e~a~~l~~~G~d~I~v~~ 307 (494)
T 1vrd_A 239 MERVEKLVKAGVDVIVIDTAH-GHSRRVIETLEMIKADYPDLPVVAGNVATPEGTEALIKAGADAVKVGV 307 (494)
T ss_dssp HHHHHHHHHTTCSEEEECCSC-CSSHHHHHHHHHHHHHCTTSCEEEEEECSHHHHHHHHHTTCSEEEECS
T ss_pred HHHHHHHHHhCCCEEEEEecC-CchHHHHHHHHHHHHHCCCceEEeCCcCCHHHHHHHHHcCCCEEEEcC
Confidence 444555555799999885543 3332 357899999988 79999998889999888875 99999954
|
| >2jgq_A Triosephosphate isomerase; glycolysis, pentose shunt, gluconeogenesis, lipid synthesis, fatty acid biosynthesis; HET: QGA; 2.3A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=93.93 E-value=0.029 Score=48.20 Aligned_cols=41 Identities=27% Similarity=0.417 Sum_probs=33.6
Q ss_pred HHHHHHhcC--CCCEEEecCCChHhHHHhhc---CCEEEEeceEee
Q psy9039 205 QLMSVKNAV--DLPILIGSGVTSDNVEHYMT---ADALIIGSHFKQ 245 (251)
Q Consensus 205 ~l~~vr~~~--~~PV~vG~GI~~~~v~~~~~---ADGvIVGS~~~~ 245 (251)
..+.+|+.. +++|+-||+++++|+.+++. .||+-||++-.+
T Consensus 177 v~~~IR~~l~~~vrIlYGGSV~~~N~~~l~~~~diDG~LVGgAsl~ 222 (233)
T 2jgq_A 177 THGFLKQILNQKTPLLYGGSVNTQNAKEILGIDSVDGLLIGSASWE 222 (233)
T ss_dssp HHHHHHHHSCTTSCEEEESSCCTTTHHHHHTSTTCCEEEESGGGGS
T ss_pred HHHHHHHHHhcCCcEEEcCCcChhhHHHHhcCCCCCeeEecHHHhC
Confidence 344677665 59999999999999999984 999999987543
|
| >3tqv_A Nicotinate-nucleotide pyrophosphorylase; glycosyltransferase, transferase; 2.62A {Francisella tularensis subsp} | Back alignment and structure |
|---|
Probab=93.52 E-value=0.092 Score=46.41 Aligned_cols=63 Identities=6% Similarity=0.130 Sum_probs=46.2
Q ss_pred cHHHHHHHhhhccccEEEecCCCCCCCCCHHHHHHHHhcC--CCCEEEecCCChHhHHHhhc--CCEEEEeceE
Q psy9039 174 DITETAKAASFFLSDGLIITGNATGDPADVSQLMSVKNAV--DLPILIGSGVTSDNVEHYMT--ADALIIGSHF 243 (251)
Q Consensus 174 ~i~~~a~~a~~~~~D~v~VTG~~~g~~~~~~~l~~vr~~~--~~PV~vG~GI~~~~v~~~~~--ADGvIVGS~~ 243 (251)
++ +.++.|...|+|.+-.-- .+.+.++++.+.. ++++.+.||||++|++++.. +|.+.||+..
T Consensus 207 tl-~ea~eAl~aGaD~I~LDn------~~~~~l~~av~~~~~~v~ieaSGGIt~~~i~~~a~tGVD~IsvGalt 273 (287)
T 3tqv_A 207 NL-DELNQAIAAKADIVMLDN------FSGEDIDIAVSIARGKVALEVSGNIDRNSIVAIAKTGVDFISVGAIT 273 (287)
T ss_dssp SH-HHHHHHHHTTCSEEEEES------CCHHHHHHHHHHHTTTCEEEEESSCCTTTHHHHHTTTCSEEECSHHH
T ss_pred CH-HHHHHHHHcCCCEEEEcC------CCHHHHHHHHHhhcCCceEEEECCCCHHHHHHHHHcCCCEEEEChhh
Confidence 44 445666666899987732 2345555544433 68999999999999999997 9999999754
|
| >2dqw_A Dihydropteroate synthase; dimer, structural genomics; 1.65A {Thermus thermophilus} PDB: 2dza_A* 2dzb_A* | Back alignment and structure |
|---|
Probab=93.52 E-value=0.08 Score=46.96 Aligned_cols=96 Identities=14% Similarity=0.115 Sum_probs=53.3
Q ss_pred HHHHhhCCCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHHHHHHHHcC
Q psy9039 36 AEIRKVLPPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQAAG 115 (251)
Q Consensus 36 ~~a~~~a~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g 115 (251)
+.+++.++.+++.|+ |.|-|-=+-..|.+.++ +..+-.+-+..+++++++. + +|+.+.++.. ..+..|...|
T Consensus 52 ~~a~~~a~~~v~~GA-dIIDIGgeSTrPga~~v-~~~eE~~Rv~pvI~~l~~~-~--vpiSIDT~~~---~Va~aAl~aG 123 (294)
T 2dqw_A 52 ERALERAREMVAEGA-DILDLGAESTRPGAAPV-PVEEEKRRLLPVLEAVLSL-G--VPVSVDTRKP---EVAEEALKLG 123 (294)
T ss_dssp -CCHHHHHHHHHHTC-SEEEEECC------------CCHHHHHHHHHHHHHTT-C--SCEEEECSCH---HHHHHHHHHT
T ss_pred HHHHHHHHHHHHCCC-CEEEECCCcCCCCCCCC-CHHHHHHHHHHHHHHHHhC-C--CeEEEECCCH---HHHHHHHHhC
Confidence 444555566888999 99987444445665554 2233333444566777765 5 7999999863 3344445558
Q ss_pred ccceecccccccccCCCceeecCcchhHHHHHhcCC
Q psy9039 116 LDFIRAESFVFGHMADEGLMNAQAGPLLRYRKQIGA 151 (251)
Q Consensus 116 ~~Fir~~~~~~~~~~~~Gli~~da~e~~~~r~~l~~ 151 (251)
++.+-. ..|. ...+..+..+++++
T Consensus 124 a~iINd---------Vsg~---~d~~m~~v~a~~~~ 147 (294)
T 2dqw_A 124 AHLLND---------VTGL---RDERMVALAARHGV 147 (294)
T ss_dssp CSEEEC---------SSCS---CCHHHHHHHHHHTC
T ss_pred CCEEEE---------CCCC---CChHHHHHHHHhCC
Confidence 887764 2222 22356777788876
|
| >3tjx_A Dihydroorotate dehydrogenase; PYRD, dhodh, lmdhodh, oxidored mutation H174A; HET: FMN; 1.64A {Leishmania major} PDB: 3gz3_A* 3gye_A* 3tro_A* | Back alignment and structure |
|---|
Probab=93.51 E-value=0.027 Score=50.87 Aligned_cols=44 Identities=16% Similarity=0.233 Sum_probs=35.6
Q ss_pred HHHHHHHhcC-CCCEEEecCC-ChHhHHHhhc--CCEEEEeceEeecC
Q psy9039 204 SQLMSVKNAV-DLPILIGSGV-TSDNVEHYMT--ADALIIGSHFKQGG 247 (251)
Q Consensus 204 ~~l~~vr~~~-~~PV~vG~GI-~~~~v~~~~~--ADGvIVGS~~~~~g 247 (251)
+.+.++++.+ ++||+.-||| |.+++.+.+. ||.|.|||+|...|
T Consensus 266 ~~v~~~~~~~~~~pIIg~GGI~s~~Da~e~i~aGAs~Vqv~Ta~~y~G 313 (354)
T 3tjx_A 266 ANINAFYRRCPGKLIFGCGGVYTGEDAFLHVLAGASMVQVGTALQEEG 313 (354)
T ss_dssp HHHHHHHHHCTTSEEEEESSCCSHHHHHHHHHHTEEEEEECHHHHHHC
T ss_pred HHHHHHHHhcCCCcEEEeCCcCCHHHHHHHHHcCCCEEEEChhhhhcC
Confidence 4456666665 7999999999 7899888885 99999999987554
|
| >3noy_A 4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth; iron-sulfur protein, non-mevalonate pathway, terpene biosynt isoprenoid biosynthesis; 2.70A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=93.46 E-value=0.12 Score=47.02 Aligned_cols=150 Identities=19% Similarity=0.179 Sum_probs=88.8
Q ss_pred CCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHHHHHHHHcCccceecc
Q psy9039 43 PPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQAAGLDFIRAE 122 (251)
Q Consensus 43 ~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g~~Fir~~ 122 (251)
+.|.++|+ |.|-+ .+|-.+ ..+.++++|+.++ +|+...+-+|. ..++. |...|++-+|.|
T Consensus 53 ~~l~~aG~-diVRv----avp~~~-----------~a~al~~I~~~~~--vPlvaDiHf~~-~lal~-a~e~G~dklRIN 112 (366)
T 3noy_A 53 KRLYEAGC-EIVRV----AVPHKE-----------DVEALEEIVKKSP--MPVIADIHFAP-SYAFL-SMEKGVHGIRIN 112 (366)
T ss_dssp HHHHHTTC-CEEEE----ECCSHH-----------HHHHHHHHHHHCS--SCEEEECCSCH-HHHHH-HHHTTCSEEEEC
T ss_pred HHHHHcCC-CEEEe----CCCChH-----------HHHHHHHHHhcCC--CCEEEeCCCCH-HHHHH-HHHhCCCeEEEC
Confidence 88999999 99964 443211 2577888998888 89999998886 43333 344677779975
Q ss_pred cccccccCCCceeecCcchhHHHHHhcCCCcchh------h-hhhHhhccCCCCCCcccHHHHHHHh---hhccccEEEe
Q psy9039 123 SFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLV------F-TDIKKKHSSHAITADVDITETAKAA---SFFLSDGLII 192 (251)
Q Consensus 123 ~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i------~-a~v~~k~~~~~~~~~~~i~~~a~~a---~~~~~D~v~V 192 (251)
. ...+. .....++.+.+++.+. .+.+ + .++..|++-+ +++...+...+.+ +..+-+-+++
T Consensus 113 P---GNig~----~~~~~~vv~~ak~~~~-piRIGvN~GSL~~~ll~~yg~~--~~eamVeSAl~~~~~~e~~gf~~ivi 182 (366)
T 3noy_A 113 P---GNIGK----EEIVREIVEEAKRRGV-AVRIGVNSGSLEKDLLEKYGYP--SAEALAESALRWSEKFEKWGFTNYKV 182 (366)
T ss_dssp H---HHHSC----HHHHHHHHHHHHHHTC-EEEEEEEGGGCCHHHHHHHSSC--CHHHHHHHHHHHHHHHHHTTCCCEEE
T ss_pred C---cccCc----hhHHHHHHHHHHHcCC-CEEEecCCcCCCHHHHHhcCCC--CHHHHHHHHHHHHHHHHhCCCCeEEE
Confidence 1 11111 1124567777777775 4444 1 2455566533 2222222222222 2245577777
Q ss_pred cCCCCCCCCCHHHHHHHHhcCCCCEEEecC
Q psy9039 193 TGNATGDPADVSQLMSVKNAVDLPILIGSG 222 (251)
Q Consensus 193 TG~~~g~~~~~~~l~~vr~~~~~PV~vG~G 222 (251)
|=..++.....+..+.+.+.++.|+-+|-+
T Consensus 183 S~K~S~v~~~i~ayr~la~~~dyPLHlGvT 212 (366)
T 3noy_A 183 SIKGSDVLQNVRANLIFAERTDVPLHIGIT 212 (366)
T ss_dssp EEECSSHHHHHHHHHHHHHHCCCCEEECCS
T ss_pred eeecCChHHHHHHHHHHHhccCCCEEEccC
Confidence 766544333345566677778999986643
|
| >2y5s_A DHPS, dihydropteroate synthase; transferase, folate biosynthesis; HET: 78H; 1.95A {Burkholderia cenocepacia} PDB: 2y5j_A* | Back alignment and structure |
|---|
Probab=93.37 E-value=0.13 Score=45.52 Aligned_cols=96 Identities=16% Similarity=0.137 Sum_probs=57.9
Q ss_pred HHHHhhCCCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHHHHHHHHcC
Q psy9039 36 AEIRKVLPPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQAAG 115 (251)
Q Consensus 36 ~~a~~~a~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g 115 (251)
+.+++.++.+++.|+ |.|-|-=+-..|.+.++ +..+-.+-+..+++.+++. + +|+.|..+... + +..|...|
T Consensus 46 ~~a~~~a~~~v~~GA-diIDIGgeSTrPga~~v-~~~eE~~Rv~pvi~~l~~~-~--vpiSIDT~~~~-V--a~aAl~aG 117 (294)
T 2y5s_A 46 DDALRRAERMIAEGA-DLLDIGGESTRPGAPPV-PLDEELARVIPLVEALRPL-N--VPLSIDTYKPA-V--MRAALAAG 117 (294)
T ss_dssp THHHHHHHHHHHTTC-SEEEEESSCCSTTCCCC-CHHHHHHHHHHHHHHHGGG-C--SCEEEECCCHH-H--HHHHHHHT
T ss_pred HHHHHHHHHHHHCCC-CEEEECCCcCCCCCCCC-CHHHHHHHHHHHHHHHhhC-C--CeEEEECCCHH-H--HHHHHHcC
Confidence 344455566888999 99987444445666654 3334434444566777655 5 79999998632 3 44445558
Q ss_pred ccceecccccccccCCCceeecCcchhHHHHHhcCC
Q psy9039 116 LDFIRAESFVFGHMADEGLMNAQAGPLLRYRKQIGA 151 (251)
Q Consensus 116 ~~Fir~~~~~~~~~~~~Gli~~da~e~~~~r~~l~~ 151 (251)
++.+-. ..|.- ..+..+..+++++
T Consensus 118 a~iINd---------Vsg~~---d~~m~~~~a~~~~ 141 (294)
T 2y5s_A 118 ADLIND---------IWGFR---QPGAIDAVRDGNS 141 (294)
T ss_dssp CSEEEE---------TTTTC---STTHHHHHSSSSC
T ss_pred CCEEEE---------CCCCC---chHHHHHHHHhCC
Confidence 888764 11211 2346667777776
|
| >1pii_A N-(5'phosphoribosyl)anthranilate isomerase; bifunctional(isomerase and synthase); 2.00A {Escherichia coli} SCOP: c.1.2.4 c.1.2.4 PDB: 1jcm_P* 2kzh_A | Back alignment and structure |
|---|
Probab=93.26 E-value=0.049 Score=51.14 Aligned_cols=161 Identities=16% Similarity=0.154 Sum_probs=88.2
Q ss_pred hCCCCcCCCCccEEEEeecCCCCccc--cCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChH-HHHHHHHHcCcc
Q psy9039 41 VLPPSVPVGVQHGVIVENMHDVPYVL--EAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNK-AALATAQAAGLD 117 (251)
Q Consensus 41 ~a~~l~~~Gv~D~i~ieN~~~~Pf~~--p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~-~~~~ia~a~g~~ 117 (251)
++++..+.|+ |.+ |+=|.. |-...|...+ .+++. .. ..-|-++.|... .-..++...+.+
T Consensus 267 da~~a~~~Ga-d~i------GfIf~~~SpR~V~~~~a~---~i~~~----~~---v~~VgVFvn~~~~~i~~~~~~~~ld 329 (452)
T 1pii_A 267 DAKAAYDAGA-IYG------GLIFVATSPRCVNVEQAQ---EVMAA----AP---LQYVGVFRNHDIADVVDKAKVLSLA 329 (452)
T ss_dssp HHHHHHHHTC-SEE------EEECCTTCTTBCCHHHHH---HHHHH----CC---CEEEEEESSCCHHHHHHHHHHHTCS
T ss_pred HHHHHHhcCC-CEE------EeecCCCCCCCCCHHHHH---HHHhc----CC---CCEEEEEeCCCHHHHHHHHHhcCCC
Confidence 3366678899 988 444432 1123343333 23332 22 223445567643 336666667789
Q ss_pred ceecccccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHhhccCCCCCCcccHHHHHHHhhhc-cccEEEe-cC-
Q psy9039 118 FIRAESFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSSHAITADVDITETAKAASFF-LSDGLII-TG- 194 (251)
Q Consensus 118 Fir~~~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~~~-~~D~v~V-TG- 194 (251)
+++.+ | ..+.+.+..++.+++. .++++.-+..+. ... . ..| .+|++.. |+
T Consensus 330 ~vQLH---G---------~E~~~~~~~l~~~~p~-~~~iika~~v~~-------~~~-----~--~~~~~~d~~LlD~~~ 382 (452)
T 1pii_A 330 AVQLH---G---------NEEQLYIDTLREALPA-HVAIWKALSVGE-------TLP-----A--REFQHVDKYVLDNGQ 382 (452)
T ss_dssp EEEEC---S---------CCCHHHHHHHHHHSCT-TSEEEEEEECSS-------SCC-----C--CCCTTCCEEEEESCS
T ss_pred EEEEC---C---------CCCHHHHHHHHhhccC-CCcEEEEEecCC-------ccc-----h--hhhhcccEEEecCCC
Confidence 98864 2 1123333445555542 344442222221 100 0 112 3565544 21
Q ss_pred CCCCCCCCHHHHHHHHhcCCCCEEEecCCChHhHHHhhc--CCEEEEeceEee-cCe
Q psy9039 195 NATGDPADVSQLMSVKNAVDLPILIGSGVTSDNVEHYMT--ADALIIGSHFKQ-GGR 248 (251)
Q Consensus 195 ~~~g~~~~~~~l~~vr~~~~~PV~vG~GI~~~~v~~~~~--ADGvIVGS~~~~-~g~ 248 (251)
..+|..-+++.+. +..+.|++++||++|+|+.+++. ..|+=|-|.+.. .|+
T Consensus 383 GGtG~~fdW~~l~---~~~~~p~iLAGGL~p~NV~~ai~~~p~gvDvsSGVE~~pG~ 436 (452)
T 1pii_A 383 GGSGQRFDWSLLN---GQSLGNVLLAGGLGADNCVEAAQTGCAGLDFNSAVESQPGI 436 (452)
T ss_dssp CCSSCCCCGGGGT---TSCCTTEEEESSCCTTTHHHHHTTCCSEEEECGGGEEETTE
T ss_pred CCCCCccCHHHhh---cccCCcEEEEcCCCHHHHHHHHhcCCCEEEeCCceeCCCCC
Confidence 2345555776654 33478999999999999988776 899999998874 454
|
| >1xg4_A Probable methylisocitrate lyase; 2-methylisocitrate lyase/inhibitor complex, isocitrate lyase superfamily; HET: ICT; 1.60A {Escherichia coli} PDB: 1xg3_A* 1mum_A 1oqf_A 1ujq_A 1o5q_A | Back alignment and structure |
|---|
Probab=93.21 E-value=0.25 Score=43.74 Aligned_cols=178 Identities=12% Similarity=0.096 Sum_probs=98.0
Q ss_pred CcCCCCccEEEEee------cCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEE---ee-CChHHH---HHHH
Q psy9039 45 SVPVGVQHGVIVEN------MHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQI---LS-GCNKAA---LATA 111 (251)
Q Consensus 45 l~~~Gv~D~i~ieN------~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~---~~-N~~~~~---~~ia 111 (251)
+++.|+ |+|.+.- .+|.| | -++++...|...++++.+.++ .|+.+.+ |- |+ ... ..-.
T Consensus 33 ~~~aG~-~ai~vs~~~~a~~~~G~p--D---~~~vt~~em~~~~~~I~~~~~--~PviaD~d~Gyg~~~-~~~~~~v~~l 103 (295)
T 1xg4_A 33 AQRAGY-QAIYLSGGGVAAGSLGLP--D---LGISTLDDVLTDIRRITDVCS--LPLLVDADIGFGSSA-FNVARTVKSM 103 (295)
T ss_dssp HHHTTC-SCEEECHHHHHHTTTCCC--S---SSCSCHHHHHHHHHHHHHHCC--SCEEEECTTCSSSSH-HHHHHHHHHH
T ss_pred HHHcCC-CEEEECchHhhhhhcCCC--C---CCCCCHHHHHHHHHHHHhhCC--CCEEecCCcccCCCH-HHHHHHHHHH
Confidence 356799 9998863 33432 2 378888889999999999888 7988887 75 43 111 1111
Q ss_pred HHcCccceecccccc-cccCCCc--eeecC---cchhHHHHHhcCCCcchhhhhhHhhccCCCCCCcccHHHHHHHhh--
Q psy9039 112 QAAGLDFIRAESFVF-GHMADEG--LMNAQ---AGPLLRYRKQIGADNVLVFTDIKKKHSSHAITADVDITETAKAAS-- 183 (251)
Q Consensus 112 ~a~g~~Fir~~~~~~-~~~~~~G--li~~d---a~e~~~~r~~l~~~~i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~-- 183 (251)
...|+.-+..+--++ ..++-.| -+.|. ...+...++.-...+..+.+..... ....+++..+.+.
T Consensus 104 ~~aGa~gv~iEd~~~~k~cgH~~gk~L~p~~~~~~~I~Aa~~a~~~~~~~i~aRtda~-------~~~gl~~ai~ra~ay 176 (295)
T 1xg4_A 104 IKAGAAGLHIEDQVGAKRSGHRPNKAIVSKEEMVDRIRAAVDAKTDPDFVIMARTDAL-------AVEGLDAAIERAQAY 176 (295)
T ss_dssp HHHTCSEEEEECBCSSCCCTTSSSCCBCCHHHHHHHHHHHHHHCSSTTSEEEEEECCH-------HHHCHHHHHHHHHHH
T ss_pred HHcCCeEEEECCCCCCcccCCCCCCccCCHHHHHHHHHHHHHhccCCCcEEEEecHHh-------hhcCHHHHHHHHHHH
Confidence 234555555431111 0011000 12222 1122222222211234443311100 0012344555554
Q ss_pred -hccccEEEecCCCCCCCCCHHHHHHHHhcCCCCEEEe---cCCCh-HhHHHhhc--CCEEEEeceE
Q psy9039 184 -FFLSDGLIITGNATGDPADVSQLMSVKNAVDLPILIG---SGVTS-DNVEHYMT--ADALIIGSHF 243 (251)
Q Consensus 184 -~~~~D~v~VTG~~~g~~~~~~~l~~vr~~~~~PV~vG---~GI~~-~~v~~~~~--ADGvIVGS~~ 243 (251)
..|+|++.+-|. ++.+.++++.+.+++|+++. ||-+| -+..++.. .+.+++|.++
T Consensus 177 ~eAGAd~i~~e~~-----~~~~~~~~i~~~~~iP~~~N~~~~g~~p~~~~~eL~~~G~~~v~~~~~~ 238 (295)
T 1xg4_A 177 VEAGAEMLFPEAI-----TELAMYRQFADAVQVPILANITEFGATPLFTTDELRSAHVAMALYPLSA 238 (295)
T ss_dssp HHTTCSEEEETTC-----CSHHHHHHHHHHHCSCBEEECCSSSSSCCCCHHHHHHTTCSEEEESSHH
T ss_pred HHcCCCEEEEeCC-----CCHHHHHHHHHHcCCCEEEEecccCCCCCCCHHHHHHcCCCEEEEChHH
Confidence 369999999764 35788889998889998652 34443 34555554 9999998764
|
| >3m47_A Orotidine 5'-phosphate decarboxylase; orotidine 5'-monophosphate decarboxylase, mutant I218A, LYAS; 1.20A {Methanothermobacter thermautotrophicusdelta H} SCOP: c.1.2.3 PDB: 3li1_A 3m5z_A 3lty_A 3ltp_A* 3g18_A* 3g1d_A* 3g1f_A* 3g1h_A* 3g1a_A* 3lv6_A* 1klz_A* 3g1y_A 3g22_A* 3g24_A* 3p5z_A* 3siz_A* 3sy5_A* 1loq_A* 1lor_A* 1kly_A* ... | Back alignment and structure |
|---|
Probab=92.97 E-value=0.37 Score=40.83 Aligned_cols=161 Identities=19% Similarity=0.205 Sum_probs=79.1
Q ss_pred CCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHH----HHHHHHHcCccceecccc
Q psy9039 49 GVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKA----ALATAQAAGLDFIRAESF 124 (251)
Q Consensus 49 Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~----~~~ia~a~g~~Fir~~~~ 124 (251)
.+ |.+.+ |+++-. .-||.+ ++++|+... .++-+.+=..+... ........|++++-++.+
T Consensus 37 ~v-~~~Kv----g~~lf~--~~G~~~-------v~~l~~~~g--~~v~lD~Kl~DipnTv~~~~~~~~~~gad~vtvh~~ 100 (228)
T 3m47_A 37 YI-DTVKI----GYPLVL--SEGMDI-------IAEFRKRFG--CRIIADFKVADIPETNEKICRATFKAGADAIIVHGF 100 (228)
T ss_dssp TC-SEEEE----EHHHHH--HHCTHH-------HHHHHHHHC--CEEEEEEEECSCHHHHHHHHHHHHHTTCSEEEEEST
T ss_pred cc-cEEEE----cHHHHH--hcCHHH-------HHHHHhcCC--CeEEEEEeecccHhHHHHHHHHHHhCCCCEEEEecc
Confidence 48 88876 444432 246654 345555223 36666665554211 223334467788776533
Q ss_pred cccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHhhccCCCCCCcccHHHHHHHhhhccccEEEecCCCCCCCCCHH
Q psy9039 125 VFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSSHAITADVDITETAKAASFFLSDGLIITGNATGDPADVS 204 (251)
Q Consensus 125 ~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~~~~~D~v~VTG~~~g~~~~~~ 204 (251)
.|. .. .....++.++.+. .+.+++.......... -.....+.++.+...|.|+++++.. ..+
T Consensus 101 ~G~-----~~----l~~~~~~~~~~g~-~v~vLt~~s~~~~~~~--~~~~~~~~a~~a~~~G~~GvV~~at------~~~ 162 (228)
T 3m47_A 101 PGA-----DS----VRACLNVAEEMGR-EVFLLTEMSHPGAEMF--IQGAADEIARMGVDLGVKNYVGPST------RPE 162 (228)
T ss_dssp TCH-----HH----HHHHHHHHHHHTC-EEEEECCCCSGGGGTT--HHHHHHHHHHHHHHTTCCEEECCSS------CHH
T ss_pred CCH-----HH----HHHHHHHHHhcCC-CeEEEEeCCCccHHHH--HHHHHHHHHHHHHHhCCcEEEECCC------ChH
Confidence 321 11 2223444444453 4544432221110000 0011234455555578999776542 356
Q ss_pred HHHHHHhcCC--CCEEEecCCChH--hHHHhhc--CCEEEEeceEee
Q psy9039 205 QLMSVKNAVD--LPILIGSGVTSD--NVEHYMT--ADALIIGSHFKQ 245 (251)
Q Consensus 205 ~l~~vr~~~~--~PV~vG~GI~~~--~v~~~~~--ADGvIVGS~~~~ 245 (251)
.++++|+.+. .++ +-.||.++ +. +... ||.++||+++-+
T Consensus 163 e~~~ir~~~~~~~~i-v~PGI~~~g~~p-~~~~aGad~iVvGr~I~~ 207 (228)
T 3m47_A 163 RLSRLREIIGQDSFL-ISPGVGAQGGDP-GETLRFADAIIVGRSIYL 207 (228)
T ss_dssp HHHHHHHHHCSSSEE-EECC----------CGGGTCSEEEECHHHHT
T ss_pred HHHHHHHhcCCCCEE-EecCcCcCCCCH-hHHHcCCCEEEECHHHhC
Confidence 6778887763 566 55577544 56 5554 999999998754
|
| >1yya_A Triosephosphate isomerase; riken structural genomics/proteom initiative, RSGI, structural genomics; 1.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=92.92 E-value=0.051 Score=47.14 Aligned_cols=32 Identities=22% Similarity=0.402 Sum_probs=28.5
Q ss_pred CCCEEEecCCChHhHHHhhc---CCEEEEeceEee
Q psy9039 214 DLPILIGSGVTSDNVEHYMT---ADALIIGSHFKQ 245 (251)
Q Consensus 214 ~~PV~vG~GI~~~~v~~~~~---ADGvIVGS~~~~ 245 (251)
+++|+-||+++++|+.+++. .||+-||++-.+
T Consensus 204 ~vrIlYGGSV~~~N~~~l~~~~diDG~LVGgAsL~ 238 (250)
T 1yya_A 204 RVRILYGGSVNPKNFADLLSMPNVDGGLVGGASLE 238 (250)
T ss_dssp TCEEEEESSCCTTTHHHHHTSTTCCEEEESGGGSS
T ss_pred ceeEEEcCCCCHHHHHHHHcCCCCCeeEeeHHHhC
Confidence 58999999999999999994 999999987543
|
| >2btm_A TIM, protein (triosephosphate isomerase); thermophilic triose-phosphate, glycolysis; 2.40A {Geobacillus stearothermophilus} SCOP: c.1.1.1 PDB: 1btm_A | Back alignment and structure |
|---|
Probab=92.91 E-value=0.051 Score=47.17 Aligned_cols=32 Identities=22% Similarity=0.497 Sum_probs=28.4
Q ss_pred CCCEEEecCCChHhHHHhhc---CCEEEEeceEee
Q psy9039 214 DLPILIGSGVTSDNVEHYMT---ADALIIGSHFKQ 245 (251)
Q Consensus 214 ~~PV~vG~GI~~~~v~~~~~---ADGvIVGS~~~~ 245 (251)
+++|+-||+++++|+.+++. .||+-||++-.+
T Consensus 204 ~vrIlYGGSV~~~N~~~l~~~~diDG~LVGgAsL~ 238 (252)
T 2btm_A 204 AIRIQYGGSVKPDNIRDFLAQQQIDGALVGGASLE 238 (252)
T ss_dssp TSEEEEESSCCTTTHHHHHTSTTCCEEEESGGGSS
T ss_pred ceeEEEcCCCCHHHHHHHHcCCCCCeeEecHHHhC
Confidence 58999999999999999993 999999987543
|
| >3paj_A Nicotinate-nucleotide pyrophosphorylase, carboxyl; TIM barrel, pyridin dicarboxylate, 5-phospho-alpha-D-ribose 1-diphosphate; 2.00A {Vibrio cholerae o1 biovar el tor} | Back alignment and structure |
|---|
Probab=92.91 E-value=0.14 Score=45.91 Aligned_cols=62 Identities=11% Similarity=0.135 Sum_probs=45.6
Q ss_pred cHHHHHHHhhhccccEEEecCCCCCCCCCHHHHHHHHhcC--CCCEEEecCCChHhHHHhhc--CCEEEEece
Q psy9039 174 DITETAKAASFFLSDGLIITGNATGDPADVSQLMSVKNAV--DLPILIGSGVTSDNVEHYMT--ADALIIGSH 242 (251)
Q Consensus 174 ~i~~~a~~a~~~~~D~v~VTG~~~g~~~~~~~l~~vr~~~--~~PV~vG~GI~~~~v~~~~~--ADGvIVGS~ 242 (251)
+++ .++.|...|+|.+-+-- .+.+.++++++.. ++++.+.||||++|++++.. +|++.||+.
T Consensus 240 tld-ea~eAl~aGaD~I~LDn------~~~~~l~~av~~l~~~v~ieaSGGIt~~~I~~~a~tGVD~isvGal 305 (320)
T 3paj_A 240 TLA-ELEEAISAGADIIMLDN------FSLEMMREAVKINAGRAALENSGNITLDNLKECAETGVDYISVGAL 305 (320)
T ss_dssp SHH-HHHHHHHTTCSEEEEES------CCHHHHHHHHHHHTTSSEEEEESSCCHHHHHHHHTTTCSEEECTHH
T ss_pred CHH-HHHHHHHcCCCEEEECC------CCHHHHHHHHHHhCCCCeEEEECCCCHHHHHHHHHcCCCEEEECce
Confidence 443 34555556899987721 2455666555443 68999999999999999997 999999984
|
| >3m9y_A Triosephosphate isomerase; TIM barrel, glycolysis, gluconeogenesis, pentose; HET: CIT; 1.90A {Staphylococcus aureus} SCOP: c.1.1.1 PDB: 3uwv_A* 3uwu_A* 3uww_A* 3uwy_A 3uwz_A* | Back alignment and structure |
|---|
Probab=92.86 E-value=0.1 Score=45.34 Aligned_cols=31 Identities=26% Similarity=0.477 Sum_probs=27.8
Q ss_pred CCCEEEecCCChHhHHHhhc---CCEEEEeceEe
Q psy9039 214 DLPILIGSGVTSDNVEHYMT---ADALIIGSHFK 244 (251)
Q Consensus 214 ~~PV~vG~GI~~~~v~~~~~---ADGvIVGS~~~ 244 (251)
+++|+-||+++++|+.+++. .||+.||++-.
T Consensus 208 ~~rIlYGGSV~~~N~~~l~~~~diDG~LVGgASL 241 (254)
T 3m9y_A 208 ATRIQYGGSVKPNNIKEYMAQTDIDGALVGGASL 241 (254)
T ss_dssp TSEEEECSCCCTTTHHHHHTSTTCCEEEESGGGS
T ss_pred CccEEEcCCcCHHHHHHHHcCCCCCeEEeeHHhh
Confidence 58999999999999999983 99999998643
|
| >4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor} | Back alignment and structure |
|---|
Probab=92.83 E-value=0.13 Score=48.65 Aligned_cols=63 Identities=22% Similarity=0.280 Sum_probs=48.1
Q ss_pred HHHHHhhhccccEEEecCCCCCCCC-CHHHHHHHHhcC-CCCEEEecCCChHhHHHhhc--CCEEEEe
Q psy9039 177 ETAKAASFFLSDGLIITGNATGDPA-DVSQLMSVKNAV-DLPILIGSGVTSDNVEHYMT--ADALIIG 240 (251)
Q Consensus 177 ~~a~~a~~~~~D~v~VTG~~~g~~~-~~~~l~~vr~~~-~~PV~vG~GI~~~~v~~~~~--ADGvIVG 240 (251)
+.++.....|+|.+.+...+ +... ..+.++++|+.. ++||++|...+.+.++.+.+ ||+++||
T Consensus 234 ~~a~~l~~aG~d~I~id~a~-g~~~~~~~~i~~ir~~~p~~~Vi~g~v~t~e~a~~l~~aGaD~I~Vg 300 (496)
T 4fxs_A 234 ERVKALVEAGVDVLLIDSSH-GHSEGVLQRIRETRAAYPHLEIIGGNVATAEGARALIEAGVSAVKVG 300 (496)
T ss_dssp HHHHHHHHTTCSEEEEECSC-TTSHHHHHHHHHHHHHCTTCCEEEEEECSHHHHHHHHHHTCSEEEEC
T ss_pred HHHHHHHhccCceEEecccc-ccchHHHHHHHHHHHHCCCceEEEcccCcHHHHHHHHHhCCCEEEEC
Confidence 33444444699999997665 3322 247899999987 89999987779999998886 9999997
|
| >4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=92.78 E-value=0.14 Score=48.32 Aligned_cols=64 Identities=20% Similarity=0.254 Sum_probs=47.9
Q ss_pred HHHHHHhhhccccEEEecCCCCCCCC-CHHHHHHHHhcC-CCCEEEecCCChHhHHHhhc--CCEEEEe
Q psy9039 176 TETAKAASFFLSDGLIITGNATGDPA-DVSQLMSVKNAV-DLPILIGSGVTSDNVEHYMT--ADALIIG 240 (251)
Q Consensus 176 ~~~a~~a~~~~~D~v~VTG~~~g~~~-~~~~l~~vr~~~-~~PV~vG~GI~~~~v~~~~~--ADGvIVG 240 (251)
.+.++.....|+|.+.+...+ +... ..+.++++|+.. ++||++|...+.+.++.+.+ ||++.||
T Consensus 231 ~~~a~~l~~aG~d~I~id~a~-g~~~~~~~~v~~i~~~~p~~~Vi~g~v~t~e~a~~l~~aGaD~I~vg 298 (490)
T 4avf_A 231 GERVAALVAAGVDVVVVDTAH-GHSKGVIERVRWVKQTFPDVQVIGGNIATAEAAKALAEAGADAVKVG 298 (490)
T ss_dssp HHHHHHHHHTTCSEEEEECSC-CSBHHHHHHHHHHHHHCTTSEEEEEEECSHHHHHHHHHTTCSEEEEC
T ss_pred HHHHHHHhhcccceEEecccC-CcchhHHHHHHHHHHHCCCceEEEeeeCcHHHHHHHHHcCCCEEEEC
Confidence 344444444699999887554 3332 247899999887 88999987779999988886 9999996
|
| >3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0 | Back alignment and structure |
|---|
Probab=92.65 E-value=0.24 Score=42.16 Aligned_cols=66 Identities=18% Similarity=0.205 Sum_probs=48.8
Q ss_pred CcccHHHHHHHhhhccccEEEecCCCCCCCCCHHHHHHHHhcCCCCEEE------e---cCCCh--HhHHHhhc--CCEE
Q psy9039 171 ADVDITETAKAASFFLSDGLIITGNATGDPADVSQLMSVKNAVDLPILI------G---SGVTS--DNVEHYMT--ADAL 237 (251)
Q Consensus 171 ~~~~i~~~a~~a~~~~~D~v~VTG~~~g~~~~~~~l~~vr~~~~~PV~v------G---~GI~~--~~v~~~~~--ADGv 237 (251)
+...+.++|+.++..|+.++.++ ..+.|+++|+.+++||+- | +=|++ +++.+++. ||.+
T Consensus 34 ~~~~~~~~A~a~~~~Ga~~i~~~--------~~~~i~~ir~~v~~Pvig~~k~d~~~~~~~I~~~~~~i~~~~~~Gad~V 105 (232)
T 3igs_A 34 KPEIVAAMALAAEQAGAVAVRIE--------GIDNLRMTRSLVSVPIIGIIKRDLDESPVRITPFLDDVDALAQAGAAII 105 (232)
T ss_dssp SHHHHHHHHHHHHHTTCSEEEEE--------SHHHHHHHHTTCCSCEEEECBCCCSSCCCCBSCSHHHHHHHHHHTCSEE
T ss_pred CcchHHHHHHHHHHCCCeEEEEC--------CHHHHHHHHHhcCCCEEEEEeecCCCcceEeCccHHHHHHHHHcCCCEE
Confidence 34566777777777899988762 378899999999999951 1 22454 67888876 9999
Q ss_pred EEeceEe
Q psy9039 238 IIGSHFK 244 (251)
Q Consensus 238 IVGS~~~ 244 (251)
++++...
T Consensus 106 ~l~~~~~ 112 (232)
T 3igs_A 106 AVDGTAR 112 (232)
T ss_dssp EEECCSS
T ss_pred EECcccc
Confidence 9998753
|
| >1tx2_A DHPS, dihydropteroate synthase; folate biosynthesis, pterine, MA transferase; HET: 680; 1.83A {Bacillus anthracis} SCOP: c.1.21.1 PDB: 1tww_A* 1twz_A* 1tx0_A* 1tws_A* 3h21_A* 3h22_A* 3h23_A* 3h24_A* 3h26_A* 3h2a_A* 3h2c_A* 3h2e_A* 3h2f_A* 3h2m_A* 3h2n_A* 3h2o_A* 3tya_A* 3tyb_A* 3tyc_A* 3tyd_A* ... | Back alignment and structure |
|---|
Probab=92.63 E-value=0.69 Score=40.91 Aligned_cols=163 Identities=12% Similarity=0.153 Sum_probs=82.7
Q ss_pred HHHHhhCCCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHHHHHHHHcC
Q psy9039 36 AEIRKVLPPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQAAG 115 (251)
Q Consensus 36 ~~a~~~a~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g 115 (251)
+.+++.++.+++.|+ |.|-|-=+-.-|...++ +..+-.+-+..+++++++.++ +|+.+..+.. ..+..|...|
T Consensus 63 ~~a~~~a~~~v~~GA-diIDIGgeStrPga~~v-~~~eE~~RvvpvI~~l~~~~~--vpiSIDT~~~---~V~~aAl~aG 135 (297)
T 1tx2_A 63 DAAVRHAKEMRDEGA-HIIDIGGESTRPGFAKV-SVEEEIKRVVPMIQAVSKEVK--LPISIDTYKA---EVAKQAIEAG 135 (297)
T ss_dssp HHHHHHHHHHHHTTC-SEEEEESCC----CCCC-CHHHHHHHHHHHHHHHHHHSC--SCEEEECSCH---HHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCC-CEEEECCCcCCCCCCCC-CHHHHHHHHHHHHHHHHhcCC--ceEEEeCCCH---HHHHHHHHcC
Confidence 555666677888999 99987333333554443 222332333345588888777 8999999853 3344444458
Q ss_pred ccceecccccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHhhccCCCCCCc------ccHHHHHHHhhhcccc-
Q psy9039 116 LDFIRAESFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSSHAITAD------VDITETAKAASFFLSD- 188 (251)
Q Consensus 116 ~~Fir~~~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~k~~~~~~~~~------~~i~~~a~~a~~~~~D- 188 (251)
++.+-.- .|.- ...+..+..+++++.-|-+-. .|.|. ..+ .-+.+..+.+..+|++
T Consensus 136 a~iINdv---------sg~~--~d~~m~~~aa~~g~~vVlmh~-----~G~p~-y~d~v~ev~~~l~~~i~~a~~~GI~~ 198 (297)
T 1tx2_A 136 AHIINDI---------WGAK--AEPKIAEVAAHYDVPIILMHN-----RDNMN-YRNLMADMIADLYDSIKIAKDAGVRD 198 (297)
T ss_dssp CCEEEET---------TTTS--SCTHHHHHHHHHTCCEEEECC-----CSCCC-CSSHHHHHHHHHHHHHHHHHHTTCCG
T ss_pred CCEEEEC---------CCCC--CCHHHHHHHHHhCCcEEEEeC-----CCCCC-cchHHHHHHHHHHHHHHHHHHcCCCh
Confidence 8887641 1110 123566777777763322210 12221 011 1122222333335654
Q ss_pred --EEEecCCCCCCC--CCHHHHHHHHhc--CCCCEEEecC
Q psy9039 189 --GLIITGNATGDP--ADVSQLMSVKNA--VDLPILIGSG 222 (251)
Q Consensus 189 --~v~VTG~~~g~~--~~~~~l~~vr~~--~~~PV~vG~G 222 (251)
-++=.|...+.. .+++.++++++. ...|+++|-.
T Consensus 199 ~~IilDPg~Gfgk~~~~n~~ll~~l~~l~~lg~Pvl~G~S 238 (297)
T 1tx2_A 199 ENIILDPGIGFAKTPEQNLEAMRNLEQLNVLGYPVLLGTS 238 (297)
T ss_dssp GGEEEECCTTSSCCHHHHHHHHHTGGGGGGGCSCBEEECT
T ss_pred hcEEEeCCCCcCCCHHHHHHHHHHHHHHHhCCCCEEEEec
Confidence 333344433222 124556655543 4799999864
|
| >1w5q_A Delta-aminolevulinic acid dehydratase; synthase, evolution, metalloenzyme, porphobilinogen synthase, protein engineering,; 1.4A {Pseudomonas aeruginosa} PDB: 1w5p_A* 1w5o_A 1w5n_A 1w56_A 1w5m_A 1w54_A 1gzg_A* 1b4k_A 2woq_A* 2c14_A* 2c16_A* 2c19_A* 2c15_A* 2c18_A* 2c13_A* | Back alignment and structure |
|---|
Probab=92.51 E-value=1 Score=40.31 Aligned_cols=31 Identities=16% Similarity=0.250 Sum_probs=24.0
Q ss_pred ccccEEEecCCCCCCCCCHHHHHHHHhcCCCCEEE
Q psy9039 185 FLSDGLIITGNATGDPADVSQLMSVKNAVDLPILI 219 (251)
Q Consensus 185 ~~~D~v~VTG~~~g~~~~~~~l~~vr~~~~~PV~v 219 (251)
-|+|.+.|- .+ -+-++.++++|+.+++|+.+
T Consensus 252 EGAD~vMVK---Pa-l~YLDIir~vk~~~~~Pvaa 282 (337)
T 1w5q_A 252 EGADMVMVK---PG-MPYLDIVRRVKDEFRAPTFV 282 (337)
T ss_dssp TTCSEEEEE---SC-GGGHHHHHHHHHHHCSCEEE
T ss_pred hCCCEEEEc---CC-CchHHHHHHHHHhcCCCEEE
Confidence 499999883 22 22368899999999999986
|
| >1hg3_A Triosephosphate isomerase; thermostability, tetrameric; 2.7A {Pyrococcus woesei} SCOP: c.1.1.1 | Back alignment and structure |
|---|
Probab=92.47 E-value=0.044 Score=46.76 Aligned_cols=41 Identities=15% Similarity=0.283 Sum_probs=31.1
Q ss_pred HHHhcC-CCCEEEecCCChHhHHHhhc---CCEEEEeceEeecCe
Q psy9039 208 SVKNAV-DLPILIGSGVTSDNVEHYMT---ADALIIGSHFKQGGR 248 (251)
Q Consensus 208 ~vr~~~-~~PV~vG~GI~~~~v~~~~~---ADGvIVGS~~~~~g~ 248 (251)
.+|+.. +++++.||||++.|..+++. +||+-||+++.+-.+
T Consensus 169 ~ir~~~~~~~ilyggsV~~~n~~~~~~~~~vDG~LVG~a~l~a~~ 213 (225)
T 1hg3_A 169 LVKKVNPEVKVLCGAGISTGEDVKKAIELGTVGVLLASGVTKAKD 213 (225)
T ss_dssp HHHHHCTTSEEEEESSCCSHHHHHHHHHTTCSEEEESHHHHTCSS
T ss_pred HHHhccCCCEEEEeCCCCcHHHHHHHHhCCCCEEEeCHHHHCCcC
Confidence 344443 68999999998777666553 999999999877543
|
| >1eye_A DHPS 1, dihydropteroate synthase I; alpha-beta barrel, transferase; HET: PMM; 1.70A {Mycobacterium tuberculosis H37RV} SCOP: c.1.21.1 | Back alignment and structure |
|---|
Probab=92.41 E-value=0.39 Score=42.14 Aligned_cols=100 Identities=10% Similarity=0.058 Sum_probs=52.7
Q ss_pred hHHHHHHHHHhhCCCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHHHH
Q psy9039 30 NMTRLCAEIRKVLPPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALA 109 (251)
Q Consensus 30 ~~~~i~~~a~~~a~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ 109 (251)
+.+.+++++ +.+++.|+ |.|-|-=+-..|...++ +..+-..-+..+++++++. + +|+.+.++.. ..+.
T Consensus 27 ~~~~a~~~a----~~~v~~GA-diIDIGgestrpga~~v-~~~eE~~Rv~pvi~~l~~~-~--~piSIDT~~~---~va~ 94 (280)
T 1eye_A 27 DLDDAVKHG----LAMAAAGA-GIVDVGGESSRPGATRV-DPAVETSRVIPVVKELAAQ-G--ITVSIDTMRA---DVAR 94 (280)
T ss_dssp SHHHHHHHH----HHHHHTTC-SEEEEECC---------------HHHHHHHHHHHHHT-T--CCEEEECSCH---HHHH
T ss_pred CHHHHHHHH----HHHHHCCC-CEEEECCccCCCCCCCC-CHHHHHHHHHHHHHHhhcC-C--CEEEEeCCCH---HHHH
Confidence 455554444 55778999 99987322223444443 2233333344466777765 5 7999999853 3355
Q ss_pred HHHHcCccceecccccccccCCCceeecCcchhHHHHHhcCCC
Q psy9039 110 TAQAAGLDFIRAESFVFGHMADEGLMNAQAGPLLRYRKQIGAD 152 (251)
Q Consensus 110 ia~a~g~~Fir~~~~~~~~~~~~Gli~~da~e~~~~r~~l~~~ 152 (251)
.|...|++.+-.- .|.- ...+..+..+++++.
T Consensus 95 aAl~aGa~iINdv---------sg~~--~d~~m~~~~a~~~~~ 126 (280)
T 1eye_A 95 AALQNGAQMVNDV---------SGGR--ADPAMGPLLAEADVP 126 (280)
T ss_dssp HHHHTTCCEEEET---------TTTS--SCTTHHHHHHHHTCC
T ss_pred HHHHcCCCEEEEC---------CCCC--CCHHHHHHHHHhCCe
Confidence 5556688887641 1111 123567777888873
|
| >4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio cholerae o1 biovar el tor} PDB: 4ff0_A* 4hlv_A* 4fez_A | Back alignment and structure |
|---|
Probab=92.40 E-value=0.16 Score=46.36 Aligned_cols=63 Identities=22% Similarity=0.296 Sum_probs=46.0
Q ss_pred HHHHHhhhccccEEEecCCCCCCCCC-HHHHHHHHhcC-CCCEEEecCCChHhHHHhhc--CCEEEEe
Q psy9039 177 ETAKAASFFLSDGLIITGNATGDPAD-VSQLMSVKNAV-DLPILIGSGVTSDNVEHYMT--ADALIIG 240 (251)
Q Consensus 177 ~~a~~a~~~~~D~v~VTG~~~g~~~~-~~~l~~vr~~~-~~PV~vG~GI~~~~v~~~~~--ADGvIVG 240 (251)
+.++.+...++|.+.++-.+ +.+.. .+.++++|+.. ++||++|...|++.+.++.+ ||++.||
T Consensus 111 ~~~~~lieaGvd~I~idta~-G~~~~~~~~I~~ik~~~p~v~Vi~G~v~t~e~A~~a~~aGAD~I~vG 177 (366)
T 4fo4_A 111 ERVKALVEAGVDVLLIDSSH-GHSEGVLQRIRETRAAYPHLEIIGGNVATAEGARALIEAGVSAVKVG 177 (366)
T ss_dssp HHHHHHHHTTCSEEEEECSC-TTSHHHHHHHHHHHHHCTTCEEEEEEECSHHHHHHHHHHTCSEEEEC
T ss_pred HHHHHHHhCCCCEEEEeCCC-CCCHHHHHHHHHHHHhcCCCceEeeeeCCHHHHHHHHHcCCCEEEEe
Confidence 33455555689999884332 22222 36688888886 89999988779999998886 9999995
|
| >2vp8_A Dihydropteroate synthase 2; RV1207 transferase, folate biosynthesis, antibiotic resistance; 2.64A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=92.37 E-value=0.32 Score=43.53 Aligned_cols=98 Identities=18% Similarity=0.167 Sum_probs=54.1
Q ss_pred HHHHHhhCCCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHHHHHHHHc
Q psy9039 35 CAEIRKVLPPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQAA 114 (251)
Q Consensus 35 ~~~a~~~a~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~ 114 (251)
.+.+++.++.+++.|+ |.|-|-=+-.-|- .++ +..+-.+-+..+++++++.+++ +|+.|.+|.. ..+..|...
T Consensus 64 ~~~a~~~A~~~v~~GA-dIIDIGgeSTrPG-~~v-~~~eEl~Rv~pvI~~l~~~~~~-vpISIDT~~~---~VaeaAl~a 136 (318)
T 2vp8_A 64 DAAARDAVHRAVADGA-DVIDVGGVKAGPG-ERV-DVDTEITRLVPFIEWLRGAYPD-QLISVDTWRA---QVAKAACAA 136 (318)
T ss_dssp CHHHHHHHHHHHHTTC-SEEEEC------------CHHHHHHHHHHHHHHHHHHSTT-CEEEEECSCH---HHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCC-CEEEECCCcCCCC-CCC-CHHHHHHHHHHHHHHHHhhCCC-CeEEEeCCCH---HHHHHHHHh
Confidence 3455555567888999 9997611111133 222 1222222233357888888722 7999999863 334444556
Q ss_pred CccceecccccccccCCCceeecCcchhHHHHHhcCC
Q psy9039 115 GLDFIRAESFVFGHMADEGLMNAQAGPLLRYRKQIGA 151 (251)
Q Consensus 115 g~~Fir~~~~~~~~~~~~Gli~~da~e~~~~r~~l~~ 151 (251)
|++.+-. ..|.- ..+..+..+++++
T Consensus 137 Ga~iIND---------Vsg~~---d~~m~~vaa~~g~ 161 (318)
T 2vp8_A 137 GADLIND---------TWGGV---DPAMPEVAAEFGA 161 (318)
T ss_dssp TCCEEEE---------TTSSS---STTHHHHHHHHTC
T ss_pred CCCEEEE---------CCCCC---chHHHHHHHHhCC
Confidence 8888764 12221 2356777778876
|
| >1mo0_A TIM, triosephosphate isomerase; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; 1.70A {Caenorhabditis elegans} SCOP: c.1.1.1 | Back alignment and structure |
|---|
Probab=92.37 E-value=0.11 Score=45.67 Aligned_cols=32 Identities=25% Similarity=0.404 Sum_probs=28.4
Q ss_pred CCCEEEecCCChHhHHHhhc---CCEEEEeceEee
Q psy9039 214 DLPILIGSGVTSDNVEHYMT---ADALIIGSHFKQ 245 (251)
Q Consensus 214 ~~PV~vG~GI~~~~v~~~~~---ADGvIVGS~~~~ 245 (251)
+++|+-||+|+++|+.+++. .||+-||++-.+
T Consensus 222 ~vrILYGGSV~~~N~~el~~~~diDG~LVGgASLk 256 (275)
T 1mo0_A 222 ATRIIYGGSVTADNAAELGKKPDIDGFLVGGASLK 256 (275)
T ss_dssp HSCEEEESSCCTTTHHHHTTSTTCCEEEESGGGGS
T ss_pred cccEEEcCCCCHhhHHHHhcCCCCCeeEechHHhC
Confidence 48999999999999999994 999999987543
|
| >1r2r_A TIM, triosephosphate isomerase; closed loop conformation in the ligand-free state, conformational heterogeneity, TIM-barrel; 1.50A {Oryctolagus cuniculus} SCOP: c.1.1.1 PDB: 1r2s_A 1r2t_A 2jk2_A 1wyi_A 1hti_A 2vom_A 1tph_1* 8tim_A 1sw3_A 1spq_A 1tpb_1* 1tpw_A* 1sw7_A 1tpu_A* 1tpc_1* 1ssd_A 1ssg_A 1sw0_A 1sq7_A 1tpv_A* ... | Back alignment and structure |
|---|
Probab=92.31 E-value=0.1 Score=45.09 Aligned_cols=32 Identities=19% Similarity=0.384 Sum_probs=28.4
Q ss_pred CCCEEEecCCChHhHHHhhc---CCEEEEeceEee
Q psy9039 214 DLPILIGSGVTSDNVEHYMT---ADALIIGSHFKQ 245 (251)
Q Consensus 214 ~~PV~vG~GI~~~~v~~~~~---ADGvIVGS~~~~ 245 (251)
+++|+-||+++++|+.+++. .||+-||++-.+
T Consensus 203 ~vrIlYGGSV~~~N~~~l~~~~diDG~LVGgAsL~ 237 (248)
T 1r2r_A 203 STRIIYGGSVTGATCKELASQPDVDGFLVGGASLK 237 (248)
T ss_dssp HCCEEECSCCCTTTHHHHHTSTTCCEEEESGGGGS
T ss_pred cccEEEcCCcCHhHHHHHHcCCCCCeeEechHHhC
Confidence 48999999999999999994 999999987544
|
| >4djd_D C/Fe-SP, corrinoid/iron-sulfur protein small subunit; TIM barrel, rossmann fold, B12-dependent methyltransferase; HET: B12; 2.38A {Moorella thermoacetica} PDB: 4dje_D* 4djf_D* | Back alignment and structure |
|---|
Probab=92.31 E-value=0.62 Score=41.76 Aligned_cols=65 Identities=12% Similarity=0.034 Sum_probs=44.1
Q ss_pred CcchHHHHHHHHHhhCCCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeC
Q psy9039 27 ITANMTRLCAEIRKVLPPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSG 102 (251)
Q Consensus 27 ~~~~~~~i~~~a~~~a~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N 102 (251)
|+...+.+.++|++-. .+.|+ |.|-|-++-.-|...+ +..+-+.+.++++++.++ +|+.|..--|
T Consensus 75 ~~~~~~~~~~~A~~~v---~~~GA-diIDIg~eStrP~~~~-----vs~ee~~~~V~~v~~~~~--vPlsIDg~~~ 139 (323)
T 4djd_D 75 FTDVINEPGRWAQKCV---AEYGA-DLIYLKLDGADPEGAN-----HSVDQCVATVKEVLQAVG--VPLVVVGCGD 139 (323)
T ss_dssp GTTTTTCHHHHHHHHH---HTTCC-SEEEEECGGGCTTTTC-----CCHHHHHHHHHHHHHHCC--SCEEEECCSC
T ss_pred HHHHHHhHHHHHHHHH---HHcCC-CEEEEcCccCCCCCCC-----CCHHHHHHHHHHHHhhCC--ceEEEECCCC
Confidence 3334455666666554 38899 9999877766666544 233337778899998888 8999994333
|
| >2i9e_A Triosephosphate isomerase; 2.00A {Tenebrio molitor} | Back alignment and structure |
|---|
Probab=92.31 E-value=0.093 Score=45.73 Aligned_cols=32 Identities=22% Similarity=0.413 Sum_probs=28.4
Q ss_pred CCCEEEecCCChHhHHHhhc---CCEEEEeceEee
Q psy9039 214 DLPILIGSGVTSDNVEHYMT---ADALIIGSHFKQ 245 (251)
Q Consensus 214 ~~PV~vG~GI~~~~v~~~~~---ADGvIVGS~~~~ 245 (251)
+++|+-||+++++|+.+++. .||+-||++-.+
T Consensus 202 ~vrIlYGGSV~~~N~~~l~~~~diDG~LVGgAsL~ 236 (259)
T 2i9e_A 202 SIRIQYGGSVTAANCKELASQPDIDGFLVGGASLK 236 (259)
T ss_dssp HCEEEECSCCCTTTHHHHHTSTTCCEEEESGGGGS
T ss_pred cccEEEcCCCCHhhHHHHhcCCCCCeeeechHhhC
Confidence 48999999999999999994 999999987544
|
| >2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri} | Back alignment and structure |
|---|
Probab=92.29 E-value=0.15 Score=43.93 Aligned_cols=83 Identities=13% Similarity=0.044 Sum_probs=54.2
Q ss_pred hhhhhhHhhccCCC--CCCcccHHHHHHHhhhccccEEEecCCCCCCCCCH-HHHHHHHhcC-CCCEEEecCCChHhHHH
Q psy9039 155 LVFTDIKKKHSSHA--ITADVDITETAKAASFFLSDGLIITGNATGDPADV-SQLMSVKNAV-DLPILIGSGVTSDNVEH 230 (251)
Q Consensus 155 ~i~a~v~~k~~~~~--~~~~~~i~~~a~~a~~~~~D~v~VTG~~~g~~~~~-~~l~~vr~~~-~~PV~vG~GI~~~~v~~ 230 (251)
.+++.+...+|... ...+.+.+++.+.+....+|.+++|...+...+.+ +.++++|+.. ++||++||....+...+
T Consensus 141 ~iva~~L~~~G~~Vi~LG~~vp~e~l~~~~~~~~~d~V~lS~l~~~~~~~~~~~i~~l~~~~~~~~v~vGG~~~~~~~~~ 220 (258)
T 2i2x_B 141 NIVTALLRANGYNVVDLGRDVPAEEVLAAVQKEKPIMLTGTALMTTTMYAFKEVNDMLLENGIKIPFACGGGAVNQDFVS 220 (258)
T ss_dssp HHHHHHHHHTTCEEEEEEEECCSHHHHHHHHHHCCSEEEEECCCTTTTTHHHHHHHHHHTTTCCCCEEEESTTCCHHHHH
T ss_pred HHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEEeeccCCHHHHHHHHHHHHhcCCCCcEEEECccCCHHHHH
Confidence 44555555555443 22346677887777778999999999866555444 5677888764 79999999884333433
Q ss_pred hhcCCEE
Q psy9039 231 YMTADAL 237 (251)
Q Consensus 231 ~~~ADGv 237 (251)
.+.||+.
T Consensus 221 ~igad~~ 227 (258)
T 2i2x_B 221 QFALGVY 227 (258)
T ss_dssp TSTTEEE
T ss_pred HcCCeEE
Confidence 3336554
|
| >2vxn_A Triosephosphate isomerase; fatty acid biosynthesis, transition state analogue, glycolysis, pentose shunt, gluconeogenesis, TIM, glycosome; HET: PGH PGA; 0.82A {Leishmania mexicana} PDB: 1if2_A* 1qds_A 1n55_A* 2y61_A 2y62_A 2y63_A 1amk_A 1tpf_A 1iig_A 1ag1_O* 1iih_A 1tpd_A 1trd_A* 2v5l_A 4tim_A* 5tim_A 6tim_A* | Back alignment and structure |
|---|
Probab=92.23 E-value=0.07 Score=46.28 Aligned_cols=32 Identities=22% Similarity=0.414 Sum_probs=28.8
Q ss_pred CCCEEEecCCChHhHHHhhc---CCEEEEeceEee
Q psy9039 214 DLPILIGSGVTSDNVEHYMT---ADALIIGSHFKQ 245 (251)
Q Consensus 214 ~~PV~vG~GI~~~~v~~~~~---ADGvIVGS~~~~ 245 (251)
+++|+-||+++++|+.+++. .||+-||++-.+
T Consensus 206 ~vrIlYGGSV~~~N~~~l~~~~diDG~LVGgAsL~ 240 (251)
T 2vxn_A 206 KLRILYGGSVNAANAATLYAKPDINGFLVGGASLK 240 (251)
T ss_dssp HCEEEEESSCCTTTHHHHHTSTTCCEEEESGGGGS
T ss_pred cccEEEcCCcCHhHHHHHhcCCCCCeeeecHHHHH
Confidence 48999999999999999994 999999988655
|
| >1qpo_A Quinolinate acid phosphoribosyl transferase; type II prtase, de novo NAD biosynthesis, PRPP, phosphoribos transferase; 2.40A {Mycobacterium tuberculosis H37RV} SCOP: c.1.17.1 d.41.2.1 PDB: 1qpn_A 1qpq_A* 1qpr_A* | Back alignment and structure |
|---|
Probab=92.22 E-value=0.19 Score=44.20 Aligned_cols=65 Identities=12% Similarity=0.116 Sum_probs=44.6
Q ss_pred HHHHHhhhccccEEEecCCCCCCCCCH-HHHHHHHhc-CCCCEEEecCCChHhHHHhhc--CCEEEEeceEe
Q psy9039 177 ETAKAASFFLSDGLIITGNATGDPADV-SQLMSVKNA-VDLPILIGSGVTSDNVEHYMT--ADALIIGSHFK 244 (251)
Q Consensus 177 ~~a~~a~~~~~D~v~VTG~~~g~~~~~-~~l~~vr~~-~~~PV~vG~GI~~~~v~~~~~--ADGvIVGS~~~ 244 (251)
+.++.+...|+|.+..=-.. +.++ +.++.+++. ..+++.+.||||++|++++.. +|++.||+.+.
T Consensus 205 eea~eal~aGaD~I~LDn~~---~~~~~~~v~~l~~~~~~v~ieaSGGIt~~~i~~~a~tGVD~isvG~l~~ 273 (284)
T 1qpo_A 205 EQLDAVLPEKPELILLDNFA---VWQTQTAVQRRDSRAPTVMLESSGGLSLQTAATYAETGVDYLAVGALTH 273 (284)
T ss_dssp HHHHHHGGGCCSEEEEETCC---HHHHHHHHHHHHHHCTTCEEEEESSCCTTTHHHHHHTTCSEEECGGGTS
T ss_pred HHHHHHHHcCCCEEEECCCC---HHHHHHHHHHhhccCCCeEEEEECCCCHHHHHHHHhcCCCEEEECHHHc
Confidence 44566665789987664311 1122 234445542 258999999999999999996 99999999553
|
| >2yc6_A Triosephosphate isomerase; glycolysis; HET: PGA; 1.45A {Giardia intestinalis} PDB: 2dp3_A 2yc7_A* 3pf3_A 2yc8_A | Back alignment and structure |
|---|
Probab=92.20 E-value=0.071 Score=46.39 Aligned_cols=31 Identities=19% Similarity=0.358 Sum_probs=28.1
Q ss_pred CCCEEEecCCChHhHHHhhc---CCEEEEeceEe
Q psy9039 214 DLPILIGSGVTSDNVEHYMT---ADALIIGSHFK 244 (251)
Q Consensus 214 ~~PV~vG~GI~~~~v~~~~~---ADGvIVGS~~~ 244 (251)
+++|+-||+++++|+.+++. .||+.||++-.
T Consensus 208 ~vrIlYGGSV~~~N~~~l~~~~diDG~LVGgAsL 241 (257)
T 2yc6_A 208 HIRIIYGGSANGSNNEKLGQCPNIDGFLVGGASL 241 (257)
T ss_dssp TCEEEEESSCCTTTHHHHHTSTTCCEEEESGGGG
T ss_pred cceEEEcCccCHHHHHHHHcCCCCCeeeecHHHH
Confidence 68999999999999999994 99999998754
|
| >2j27_A Triosephosphate isomerase glycosomal; TIM, 2PG, LOOP7, glycosome, TIM-barrel, gluconeogenesis, lipid synthesis, atomic resolution; 1.15A {Trypanosoma brucei brucei} PDB: 2j24_A 1kv5_A 1tpe_A 1tsi_A* 3tim_A 2v2c_A 2v0t_A 1tri_A 1tti_A 1mss_A 1ttj_A* 2wsq_A 2y70_A 2y6z_A* 1ml1_A 2wsr_A 3q37_A 2v2h_A 2v2d_A 1dkw_A ... | Back alignment and structure |
|---|
Probab=92.18 E-value=0.08 Score=45.89 Aligned_cols=32 Identities=22% Similarity=0.445 Sum_probs=28.8
Q ss_pred CCCEEEecCCChHhHHHhhc---CCEEEEeceEee
Q psy9039 214 DLPILIGSGVTSDNVEHYMT---ADALIIGSHFKQ 245 (251)
Q Consensus 214 ~~PV~vG~GI~~~~v~~~~~---ADGvIVGS~~~~ 245 (251)
+++|+-||+++++|+++++. .||+-||++-.+
T Consensus 205 ~vrIlYGGSV~~~N~~~l~~~~diDG~LVGgAsL~ 239 (250)
T 2j27_A 205 ELRILYGGSVNGKNARTLYQQRDVNGFLVGGASLK 239 (250)
T ss_dssp HCCEEEESSCCTTTHHHHHTSTTCCEEEESGGGGS
T ss_pred cccEEEcCCCCHHHHHHHHcCCCCCeeeeehHHHH
Confidence 48999999999999999993 999999988655
|
| >3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.94A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=92.16 E-value=0.16 Score=46.35 Aligned_cols=65 Identities=17% Similarity=0.089 Sum_probs=46.3
Q ss_pred HHHHHHHhhhccccEEEecCCCCCCCCC-HHHHHHHHhcC-CCCEEEecCCChHhHHHhhc--CCEEEEe
Q psy9039 175 ITETAKAASFFLSDGLIITGNATGDPAD-VSQLMSVKNAV-DLPILIGSGVTSDNVEHYMT--ADALIIG 240 (251)
Q Consensus 175 i~~~a~~a~~~~~D~v~VTG~~~g~~~~-~~~l~~vr~~~-~~PV~vG~GI~~~~v~~~~~--ADGvIVG 240 (251)
..+.++.+...|+|.+.+.... |.... .+.++++|+.. ++||++|.-.|++.+..+.+ ||++.||
T Consensus 101 ~~e~~~~a~~aGvdvI~id~a~-G~~~~~~e~I~~ir~~~~~~~Vi~G~V~T~e~A~~a~~aGaD~I~Vg 169 (361)
T 3r2g_A 101 ELQRAEALRDAGADFFCVDVAH-AHAKYVGKTLKSLRQLLGSRCIMAGNVATYAGADYLASCGADIIKAG 169 (361)
T ss_dssp HHHHHHHHHHTTCCEEEEECSC-CSSHHHHHHHHHHHHHHTTCEEEEEEECSHHHHHHHHHTTCSEEEEC
T ss_pred HHHHHHHHHHcCCCEEEEeCCC-CCcHhHHHHHHHHHHhcCCCeEEEcCcCCHHHHHHHHHcCCCEEEEc
Confidence 3444555555689988774332 33222 46788999886 79999875558999988886 9999996
|
| >2v5b_A Triosephosphate isomerase; TIM, unfolding, monotctim, glycosome, gluconeogenesis, lipid synthesis, monomeric mutant, glycolysis, pentose shunt; 2.00A {Trypanosoma cruzi} | Back alignment and structure |
|---|
Probab=92.12 E-value=0.058 Score=46.63 Aligned_cols=30 Identities=27% Similarity=0.481 Sum_probs=27.1
Q ss_pred CCCEEEecCCChHhHHHhhc---CCEEEEeceE
Q psy9039 214 DLPILIGSGVTSDNVEHYMT---ADALIIGSHF 243 (251)
Q Consensus 214 ~~PV~vG~GI~~~~v~~~~~---ADGvIVGS~~ 243 (251)
+++|+-||+++++|+++++. .||+.||.+=
T Consensus 199 ~vrIlYGGSV~~~N~~~l~~~~diDG~LVGgAS 231 (244)
T 2v5b_A 199 QLRILYGGSVTAKNARTLYQMRDINGFLVGGAS 231 (244)
T ss_dssp HCEEEECSCCCHHHHHHHHTSTTCCEEEESGGG
T ss_pred cccEEEcCCCCHhHHHHHhcCCCCCeeeechHH
Confidence 48999999999999999994 9999999653
|
| >1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica} | Back alignment and structure |
|---|
Probab=92.11 E-value=0.27 Score=40.67 Aligned_cols=82 Identities=12% Similarity=0.138 Sum_probs=53.6
Q ss_pred hhhhhhHhhccCCC--CCCcccHHHHHHHhhhccccEEEecCCCCCCCCCH-HHHHHHHhcC---CCCEEEecCC-ChHh
Q psy9039 155 LVFTDIKKKHSSHA--ITADVDITETAKAASFFLSDGLIITGNATGDPADV-SQLMSVKNAV---DLPILIGSGV-TSDN 227 (251)
Q Consensus 155 ~i~a~v~~k~~~~~--~~~~~~i~~~a~~a~~~~~D~v~VTG~~~g~~~~~-~~l~~vr~~~---~~PV~vG~GI-~~~~ 227 (251)
.+++.....+|... ...+.+.+++.+.+....+|.+++|...+...+.+ +.++++|+.. ++||++||.. +++-
T Consensus 106 ~~va~~l~~~G~~v~~LG~~vp~~~l~~~~~~~~~d~v~lS~~~~~~~~~~~~~i~~l~~~~~~~~~~v~vGG~~~~~~~ 185 (210)
T 1y80_A 106 NLVAMMLESGGFTVYNLGVDIEPGKFVEAVKKYQPDIVGMSALLTTTMMNMKSTIDALIAAGLRDRVKVIVGGAPLSQDF 185 (210)
T ss_dssp HHHHHHHHHTTCEEEECCSSBCHHHHHHHHHHHCCSEEEEECCSGGGTHHHHHHHHHHHHTTCGGGCEEEEESTTCCHHH
T ss_pred HHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEeccccccHHHHHHHHHHHHhcCCCCCCeEEEECCCCCHHH
Confidence 44444444544332 24457788888888777999999999765443334 5577888763 4999999988 5543
Q ss_pred HHHhhcCCEE
Q psy9039 228 VEHYMTADAL 237 (251)
Q Consensus 228 v~~~~~ADGv 237 (251)
. +.+.||+.
T Consensus 186 ~-~~~gad~~ 194 (210)
T 1y80_A 186 A-DEIGADGY 194 (210)
T ss_dssp H-HHHTCSEE
T ss_pred H-HHcCCeEE
Confidence 3 33347753
|
| >1m6j_A TIM, TPI, triosephosphate isomerase; asymmetry, monomer stability; 1.50A {Entamoeba histolytica} SCOP: c.1.1.1 | Back alignment and structure |
|---|
Probab=92.07 E-value=0.12 Score=45.14 Aligned_cols=32 Identities=19% Similarity=0.310 Sum_probs=28.3
Q ss_pred CCCEEEecCCChHhHHHhhc---CCEEEEeceEee
Q psy9039 214 DLPILIGSGVTSDNVEHYMT---ADALIIGSHFKQ 245 (251)
Q Consensus 214 ~~PV~vG~GI~~~~v~~~~~---ADGvIVGS~~~~ 245 (251)
+++|+-||+++++|+.+++. .||+.||++-.+
T Consensus 212 ~vrIlYGGSV~~~N~~~l~~~~diDG~LVGgAsL~ 246 (261)
T 1m6j_A 212 ATRIQYGGSVNPANCNELAKKADIDGFLVGGASLD 246 (261)
T ss_dssp HSCEEECSCCCTTTHHHHHTSTTCCEEEESGGGGS
T ss_pred cccEEEcCCcCHhhHHHHhcCCCCCeeEecHHHhC
Confidence 48999999999999999994 999999987543
|
| >3mcm_A 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase/dihydropteroate...; folate, TIM barrel, synthase, HPPK, DHPS; 2.20A {Francisella tularensis subsp} PDB: 3mcn_A* 3mco_A* | Back alignment and structure |
|---|
Probab=92.03 E-value=0.22 Score=46.53 Aligned_cols=99 Identities=9% Similarity=-0.041 Sum_probs=56.9
Q ss_pred HHHHhhCCCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHH---h--CCCCccEEEEEeeCChHHHHHH
Q psy9039 36 AEIRKVLPPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRK---V--LPPSVPVGVQILSGCNKAALAT 110 (251)
Q Consensus 36 ~~a~~~a~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~---~--~~~~~P~Gvn~~~N~~~~~~~i 110 (251)
+.+++.++.+++.|+ |.|-|-=+-..|...++ +..+-.+-+..+++++++ . ++ +|+.|.+|... +...++
T Consensus 212 ~~al~~A~~mv~~GA-dIIDIGgeSTrPGa~~V-s~~EE~~Rv~pvI~~l~~~~~~~~~~--vpISIDT~~~~-VaeaAL 286 (442)
T 3mcm_A 212 NQRKLNLDELIQSGA-EIIDIGAESTKPDAKPI-SIEEEFNKLNEFLEYFKSQLANLIYK--PLVSIDTRKLE-VMQKIL 286 (442)
T ss_dssp CHHHHHHHHHHHHTC-SEEEEECCCCCC----C-CHHHHHHHHHHHHHHHHHHTTTCSSC--CEEEEECCCHH-HHHHHH
T ss_pred HHHHHHHHHHHHCCC-CEEEECCCCCCCCCCCC-CHHHHHHHHHHHHHHHHhhccccCCC--CeEEEeCCCHH-HHHHHH
Confidence 445555677888999 99987333334555443 122222223335788887 3 25 79999998643 555565
Q ss_pred HHHcCccc-eecccccccccCCCceeecCcchhHHHHHhcCC
Q psy9039 111 AQAAGLDF-IRAESFVFGHMADEGLMNAQAGPLLRYRKQIGA 151 (251)
Q Consensus 111 a~a~g~~F-ir~~~~~~~~~~~~Gli~~da~e~~~~r~~l~~ 151 (251)
....|++. +-. ..|. ...+..+..+++++
T Consensus 287 ~~~aGa~i~IND---------Vsg~---~d~~m~~v~a~~g~ 316 (442)
T 3mcm_A 287 AKHHDIIWMIND---------VECN---NIEQKAQLIAKYNK 316 (442)
T ss_dssp HHHGGGCCEEEE---------CCCT---THHHHHHHHHHHTC
T ss_pred hhCCCCCEEEEc---------CCCC---CChHHHHHHHHhCC
Confidence 54578888 664 2221 12356677777776
|
| >1o5x_A TIM, triosephosphate isomerase; 2- phosphoglycerate, META-phosphate, catalytic LOOP6; HET: 2PG; 1.10A {Plasmodium falciparum} SCOP: c.1.1.1 PDB: 1lzo_A 1m7o_A* 1m7p_A* 1lyx_A* 1ydv_A 2vfi_A* 3psw_A 3psv_A 3pwa_A 2vfh_A* 2vff_A 2vfg_A* 1vga_A 1woa_A* 1wob_A 3pvf_A 3py2_A 2vfd_A 2vfe_A* | Back alignment and structure |
|---|
Probab=91.95 E-value=0.034 Score=48.23 Aligned_cols=32 Identities=22% Similarity=0.496 Sum_probs=28.8
Q ss_pred CCCEEEecCCChHhHHHhhc---CCEEEEeceEee
Q psy9039 214 DLPILIGSGVTSDNVEHYMT---ADALIIGSHFKQ 245 (251)
Q Consensus 214 ~~PV~vG~GI~~~~v~~~~~---ADGvIVGS~~~~ 245 (251)
+++|+-||+++++|+++++. .||+-||++-.+
T Consensus 203 ~vrIlYGGSV~~~N~~~l~~~~diDG~LVGgAsL~ 237 (248)
T 1o5x_A 203 QIRILYGGSVNTENCSSLIQQEDIDGFLVGNASLK 237 (248)
T ss_dssp HSEEEECSCCCTTTHHHHHTSTTCCEEEECGGGGS
T ss_pred cceEEEcCCCCHHHHHHHHcCCCCCeeEeeHHHHH
Confidence 48999999999999999994 999999988655
|
| >1b9b_A TIM, protein (triosephosphate isomerase); thermophilic; 2.85A {Thermotoga maritima} SCOP: c.1.1.1 | Back alignment and structure |
|---|
Probab=91.86 E-value=0.052 Score=47.19 Aligned_cols=32 Identities=22% Similarity=0.379 Sum_probs=28.3
Q ss_pred CCCEEEecCCChHhHHHhhc---CCEEEEeceEee
Q psy9039 214 DLPILIGSGVTSDNVEHYMT---ADALIIGSHFKQ 245 (251)
Q Consensus 214 ~~PV~vG~GI~~~~v~~~~~---ADGvIVGS~~~~ 245 (251)
+++|+-||+++++|+.+++. .||+-||++-.+
T Consensus 206 ~vrIlYGGSV~~~N~~~l~~~~diDG~LVGgASLk 240 (255)
T 1b9b_A 206 SIRILYGGSIKPDNFLGLIVQKDIDGGLVGGASLK 240 (255)
T ss_dssp HSEEEEESSCCHHHHTTTSSSTTCCEEEESGGGTS
T ss_pred cceEEEcCcCCHHHHHHHHcCCCCCeeEeehHhhc
Confidence 48999999999999999993 999999987543
|
| >1aw2_A Triosephosphate isomerase; psychrophilic, vibrio marinus; 2.65A {Moritella marina} SCOP: c.1.1.1 PDB: 1aw1_A | Back alignment and structure |
|---|
Probab=91.85 E-value=0.11 Score=45.06 Aligned_cols=32 Identities=22% Similarity=0.447 Sum_probs=28.4
Q ss_pred CCCEEEecCCChHhHHHhhc---CCEEEEeceEee
Q psy9039 214 DLPILIGSGVTSDNVEHYMT---ADALIIGSHFKQ 245 (251)
Q Consensus 214 ~~PV~vG~GI~~~~v~~~~~---ADGvIVGS~~~~ 245 (251)
+++|+-||+++++|+.+++. .||+.||++-.+
T Consensus 206 ~vrIlYGGSV~~~N~~~l~~~~diDG~LVGgAsL~ 240 (256)
T 1aw2_A 206 NVVIQYGGSVKPENAAAYFAQPDIDGALVGGAALD 240 (256)
T ss_dssp HCEEEECSCCCTTTHHHHTTSTTCCEEEESGGGGC
T ss_pred cccEEEcCCCCHHHHHHHHcCCCCCeeeecHHHhC
Confidence 48999999999999999994 999999987543
|
| >3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri} | Back alignment and structure |
|---|
Probab=91.79 E-value=0.14 Score=43.04 Aligned_cols=81 Identities=12% Similarity=0.124 Sum_probs=51.8
Q ss_pred hhhhhhHhhccCCC--CCCcccHHHHHHHhhhccccEEEecCCCCC--CCCCH-HHHHHHHhcC---CCCEEEecCC-Ch
Q psy9039 155 LVFTDIKKKHSSHA--ITADVDITETAKAASFFLSDGLIITGNATG--DPADV-SQLMSVKNAV---DLPILIGSGV-TS 225 (251)
Q Consensus 155 ~i~a~v~~k~~~~~--~~~~~~i~~~a~~a~~~~~D~v~VTG~~~g--~~~~~-~~l~~vr~~~---~~PV~vG~GI-~~ 225 (251)
.+++.+...+|... ...+.+.+++.+.+....+|.+++||+..- ....+ +.++++|+.. ++||++||.. ++
T Consensus 110 ~iv~~~l~~~G~~Vi~LG~~vp~e~iv~~~~~~~~d~v~l~~S~l~~~~~~~~~~~i~~l~~~~~~~~v~v~vGG~~~~~ 189 (215)
T 3ezx_A 110 RLVTTMLGANGFQIVDLGVDVLNENVVEEAAKHKGEKVLLVGSALMTTSMLGQKDLMDRLNEEKLRDSVKCMFGGAPVSD 189 (215)
T ss_dssp HHHHHHHHHTSCEEEECCSSCCHHHHHHHHHHTTTSCEEEEEECSSHHHHTHHHHHHHHHHHTTCGGGSEEEEESSSCCH
T ss_pred HHHHHHHHHCCCeEEEcCCCCCHHHHHHHHHHcCCCEEEEEchhcccCcHHHHHHHHHHHHHcCCCCCCEEEEECCCCCH
Confidence 44444444444332 245678888888888889999999554332 22223 5677888774 6999999998 65
Q ss_pred HhHHHhhcCCE
Q psy9039 226 DNVEHYMTADA 236 (251)
Q Consensus 226 ~~v~~~~~ADG 236 (251)
+ .++.+.||+
T Consensus 190 ~-~a~~iGad~ 199 (215)
T 3ezx_A 190 K-WIEEIGADA 199 (215)
T ss_dssp H-HHHHHTCCB
T ss_pred H-HHHHhCCeE
Confidence 4 444444664
|
| >1ney_A TIM, triosephosphate isomerase; yeast, DHAP, dihydroxyacetone phosphate, michaelis complex; HET: FTR 13P; 1.20A {Saccharomyces cerevisiae} SCOP: c.1.1.1 PDB: 1nf0_A* 1i45_A* 1ypi_A 2ypi_A 7tim_A* 3ypi_A* | Back alignment and structure |
|---|
Probab=91.69 E-value=0.033 Score=48.24 Aligned_cols=32 Identities=22% Similarity=0.453 Sum_probs=28.8
Q ss_pred CCCEEEecCCChHhHHHhhc---CCEEEEeceEee
Q psy9039 214 DLPILIGSGVTSDNVEHYMT---ADALIIGSHFKQ 245 (251)
Q Consensus 214 ~~PV~vG~GI~~~~v~~~~~---ADGvIVGS~~~~ 245 (251)
+++|+-||+++++|+.+++. .||+-||++-.+
T Consensus 202 ~vrIlYGGSV~~~N~~~l~~~~diDG~LVGgAsL~ 236 (247)
T 1ney_A 202 ELRILYGGSANGSNAVTFKDKADVDGFLVGGASLK 236 (247)
T ss_dssp HCCEEEESSCCTTTGGGGTTCTTCCEEEESGGGGS
T ss_pred cceEEEcCCcCHhHHHHHHcCCCCCeeEeehHHHH
Confidence 48999999999999999994 999999988655
|
| >2c6q_A GMP reductase 2; TIM barrel, metal-binding, NADP, oxidoreductase, potassium; HET: IMP NDP; 1.70A {Homo sapiens} PDB: 2bzn_A* 2a7r_A* 2ble_A* 2bwg_A* | Back alignment and structure |
|---|
Probab=91.50 E-value=0.15 Score=46.19 Aligned_cols=54 Identities=22% Similarity=0.273 Sum_probs=42.3
Q ss_pred cccEEEecCCCCCCCC-CHHHHHHHHhcC-CCCEEEecCCChHhHHHhhc--CCEEEEe
Q psy9039 186 LSDGLIITGNATGDPA-DVSQLMSVKNAV-DLPILIGSGVTSDNVEHYMT--ADALIIG 240 (251)
Q Consensus 186 ~~D~v~VTG~~~g~~~-~~~~l~~vr~~~-~~PV~vG~GI~~~~v~~~~~--ADGvIVG 240 (251)
++|++.++... +... .++.++++|+.+ ++||++|+..|++++..+.+ ||+++|+
T Consensus 132 g~~~i~i~~~~-g~~~~~~~~i~~lr~~~~~~~vi~g~v~t~e~A~~a~~aGaD~I~v~ 189 (351)
T 2c6q_A 132 QVKYICLDVAN-GYSEHFVEFVKDVRKRFPQHTIMAGNVVTGEMVEELILSGADIIKVG 189 (351)
T ss_dssp TCCEEEEECSC-TTBHHHHHHHHHHHHHCTTSEEEEEEECSHHHHHHHHHTTCSEEEEC
T ss_pred CCCEEEEEecC-CCcHHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHHHhCCCEEEEC
Confidence 78988776432 3222 247799999988 89999998889999988886 9999996
|
| >1tre_A Triosephosphate isomerase; intramolecular oxidoreductase; 2.60A {Escherichia coli} SCOP: c.1.1.1 PDB: 1tmh_A | Back alignment and structure |
|---|
Probab=91.47 E-value=0.059 Score=46.86 Aligned_cols=32 Identities=19% Similarity=0.346 Sum_probs=28.4
Q ss_pred CCCEEEecCCChHhHHHhhc---CCEEEEeceEee
Q psy9039 214 DLPILIGSGVTSDNVEHYMT---ADALIIGSHFKQ 245 (251)
Q Consensus 214 ~~PV~vG~GI~~~~v~~~~~---ADGvIVGS~~~~ 245 (251)
+++|+-||+++++|+.+++. .||+.||++-.+
T Consensus 204 ~vrIlYGGSV~~~N~~~l~~~~diDG~LVGgAsL~ 238 (255)
T 1tre_A 204 QVIIQYGGSVNASNAAELFAQPDIDGALVGGASLK 238 (255)
T ss_dssp HCEEEECSCCCTTTHHHHHTSTTCCEEEESGGGGC
T ss_pred cccEEEcCCCCHHHHHHHHcCCCCCeeEecHHHhC
Confidence 58999999999999999994 999999987543
|
| >3th6_A Triosephosphate isomerase; alpha/beta barrel, embryogenesis, glycolysis; 2.40A {Rhipicephalus microplus} | Back alignment and structure |
|---|
Probab=91.46 E-value=0.13 Score=44.53 Aligned_cols=31 Identities=19% Similarity=0.334 Sum_probs=27.6
Q ss_pred CCCEEEecCCChHhHHHhhc---CCEEEEeceEe
Q psy9039 214 DLPILIGSGVTSDNVEHYMT---ADALIIGSHFK 244 (251)
Q Consensus 214 ~~PV~vG~GI~~~~v~~~~~---ADGvIVGS~~~ 244 (251)
+++|+-||+++++|+.+++. .||+.||++=.
T Consensus 203 ~vrIlYGGSV~~~N~~~l~~~~diDG~LVGgASL 236 (249)
T 3th6_A 203 KVRIQYGGSVNAGNCKELGRKPDIDGFLVGGASL 236 (249)
T ss_dssp HCCEEECSCCCTTTHHHHHTSTTCCEEEECGGGG
T ss_pred cccEEEcCccCHhHHHHHhcCCCCCEEEeehHhh
Confidence 48999999999999999984 99999998743
|
| >3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum} | Back alignment and structure |
|---|
Probab=91.45 E-value=0.23 Score=45.10 Aligned_cols=63 Identities=21% Similarity=0.392 Sum_probs=45.8
Q ss_pred HHHHHhhhccccEEEecCCCCCCCCC-HHHHHHHHhcCCCCEEEecCCChHhHHHhhc--CCEEEEe
Q psy9039 177 ETAKAASFFLSDGLIITGNATGDPAD-VSQLMSVKNAVDLPILIGSGVTSDNVEHYMT--ADALIIG 240 (251)
Q Consensus 177 ~~a~~a~~~~~D~v~VTG~~~g~~~~-~~~l~~vr~~~~~PV~vG~GI~~~~v~~~~~--ADGvIVG 240 (251)
+.++.+...++|.+.+.-.+ +.+.. .+.++++|+..++||++|.-.|++.+..+.+ ||++.||
T Consensus 108 e~a~~l~eaGad~I~ld~a~-G~~~~~~~~i~~i~~~~~~~Vivg~v~t~e~A~~l~~aGaD~I~VG 173 (361)
T 3khj_A 108 ERAKLLVEAGVDVIVLDSAH-GHSLNIIRTLKEIKSKMNIDVIVGNVVTEEATKELIENGADGIKVG 173 (361)
T ss_dssp HHHHHHHHTTCSEEEECCSC-CSBHHHHHHHHHHHHHCCCEEEEEEECSHHHHHHHHHTTCSEEEEC
T ss_pred HHHHHHHHcCcCeEEEeCCC-CCcHHHHHHHHHHHHhcCCcEEEccCCCHHHHHHHHHcCcCEEEEe
Confidence 34444555689998874332 33222 3678888888899999977668999988886 9999996
|
| >1p0k_A Isopentenyl-diphosphate delta-isomerase; terpene biosynthesis, dimethylallyl diphosphate, flavoprotein; 1.90A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1p0n_A* | Back alignment and structure |
|---|
Probab=91.42 E-value=0.4 Score=42.92 Aligned_cols=65 Identities=22% Similarity=0.404 Sum_probs=44.6
Q ss_pred HHHHHHhhhccccEEEecCCCC-------CCCC---CHHHHHHHHhcCCCCEEE---ecCCChHhHHHhhc--CCEEEEe
Q psy9039 176 TETAKAASFFLSDGLIITGNAT-------GDPA---DVSQLMSVKNAVDLPILI---GSGVTSDNVEHYMT--ADALIIG 240 (251)
Q Consensus 176 ~~~a~~a~~~~~D~v~VTG~~~-------g~~~---~~~~l~~vr~~~~~PV~v---G~GI~~~~v~~~~~--ADGvIVG 240 (251)
+...+..+..++|++.+..... +.+. ..+.++++|+.+++||++ |+|++++.+..+.+ +|+++|.
T Consensus 130 ~~~~~~~~~~gad~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~vr~~~~~Pv~vK~~~~~~~~~~a~~a~~~Gad~I~v~ 209 (349)
T 1p0k_A 130 AQAKEAVEMIGANALQIHLNVIQEIVMPEGDRSFSGALKRIEQICSRVSVPVIVKEVGFGMSKASAGKLYEAGAAAVDIG 209 (349)
T ss_dssp HHHHHHHHHTTCSEEEEEECTTTTC--------CTTHHHHHHHHHHHCSSCEEEEEESSCCCHHHHHHHHHHTCSEEEEE
T ss_pred HHHHHHHHhcCCCeEEecccchhhhcCCCCCcchHHHHHHHHHHHHHcCCCEEEEecCCCCCHHHHHHHHHcCCCEEEEc
Confidence 3333333446789886654321 1111 136788999989999998 78889988888876 9999995
|
| >1w1z_A Delta-aminolevulinic acid dehydratase; synthase, tetrapyrrole biosynthesis, ALAD, porphyrin biosynt heme biosynthesis, lyase; 2.6A {Prosthecochloris vibrioformis} SCOP: c.1.10.3 PDB: 2c1h_A* | Back alignment and structure |
|---|
Probab=91.36 E-value=0.89 Score=40.53 Aligned_cols=31 Identities=23% Similarity=0.314 Sum_probs=24.0
Q ss_pred ccccEEEecCCCCCCCCCHHHHHHHHhcCCCCEEE
Q psy9039 185 FLSDGLIITGNATGDPADVSQLMSVKNAVDLPILI 219 (251)
Q Consensus 185 ~~~D~v~VTG~~~g~~~~~~~l~~vr~~~~~PV~v 219 (251)
-|+|.+.|- .+ -+-++.++++|+.+++|+.+
T Consensus 245 EGAD~vMVK---Pa-l~YLDIir~vk~~~~~P~aa 275 (328)
T 1w1z_A 245 EGADIVMVK---PG-LAYLDIVWRTKERFDVPVAI 275 (328)
T ss_dssp HTCSEEEEE---SC-GGGHHHHHHHHHHHCSCEEE
T ss_pred hCCCEEEEc---CC-CchHHHHHHHHHhcCCCEEE
Confidence 499999883 22 22368899999999999986
|
| >3sgz_A Hydroxyacid oxidase 2; flavoprotein, homology, INH oxidoreductase-oxidoreductase inhibitor complex; HET: FMN HO6; 1.35A {Rattus norvegicus} PDB: 1tb3_A* | Back alignment and structure |
|---|
Probab=91.35 E-value=0.34 Score=43.98 Aligned_cols=41 Identities=17% Similarity=0.314 Sum_probs=34.4
Q ss_pred CCHHHHHHHHhcCCCCEEEecCCChHhHHHhhc--CCEEEEec
Q psy9039 201 ADVSQLMSVKNAVDLPILIGSGVTSDNVEHYMT--ADALIIGS 241 (251)
Q Consensus 201 ~~~~~l~~vr~~~~~PV~vG~GI~~~~v~~~~~--ADGvIVGS 241 (251)
.+++.++.+|+.+++||++-+=.+.+.+..+.+ +|+++|..
T Consensus 204 ~~w~~i~~lr~~~~~PvivK~v~~~e~A~~a~~~GaD~I~vsn 246 (352)
T 3sgz_A 204 FCWNDLSLLQSITRLPIILKGILTKEDAELAMKHNVQGIVVSN 246 (352)
T ss_dssp CCHHHHHHHHHHCCSCEEEEEECSHHHHHHHHHTTCSEEEECC
T ss_pred CCHHHHHHHHHhcCCCEEEEecCcHHHHHHHHHcCCCEEEEeC
Confidence 357889999999999999986558888888775 99999954
|
| >1pv8_A Delta-aminolevulinic acid dehydratase; porphobilinogen synthase, tetrapyrrole biosynthesis, reactio intermediate, lyase; HET: PB1; 2.20A {Homo sapiens} SCOP: c.1.10.3 PDB: 1e51_A* 2z0i_A 2z1b_A | Back alignment and structure |
|---|
Probab=91.17 E-value=1 Score=40.25 Aligned_cols=31 Identities=26% Similarity=0.362 Sum_probs=23.9
Q ss_pred ccccEEEecCCCCCCCCCHHHHHHHHhcC-CCCEEE
Q psy9039 185 FLSDGLIITGNATGDPADVSQLMSVKNAV-DLPILI 219 (251)
Q Consensus 185 ~~~D~v~VTG~~~g~~~~~~~l~~vr~~~-~~PV~v 219 (251)
-|+|.+.|- .+ -+-++.++++|+.+ ++|+.+
T Consensus 244 EGAD~vMVK---Pa-l~YLDIi~~vk~~~p~~P~aa 275 (330)
T 1pv8_A 244 EGADMLMVK---PG-MPYLDIVREVKDKHPDLPLAV 275 (330)
T ss_dssp TTCSBEEEE---SC-GGGHHHHHHHHHHSTTSCEEE
T ss_pred hCCceEEEe---cC-ccHHHHHHHHHHhcCCCCeEE
Confidence 599999883 22 12368899999999 999986
|
| >3ve9_A Orotidine-5'-phosphate decarboxylase; TIM barrel fold, orotidine 5'-monopho decarboxylase, lyase; 1.45A {Metallosphaera sedula} PDB: 3ve7_A | Back alignment and structure |
|---|
Probab=91.11 E-value=0.24 Score=41.81 Aligned_cols=66 Identities=20% Similarity=0.180 Sum_probs=48.2
Q ss_pred cHHHHHHHhhhccccEEEecCCCCCCCCCHHHHHHHHhcCCCCEEEecCCChH--hHHHhhc--CCEEEEeceEee
Q psy9039 174 DITETAKAASFFLSDGLIITGNATGDPADVSQLMSVKNAVDLPILIGSGVTSD--NVEHYMT--ADALIIGSHFKQ 245 (251)
Q Consensus 174 ~i~~~a~~a~~~~~D~v~VTG~~~g~~~~~~~l~~vr~~~~~PV~vG~GI~~~--~v~~~~~--ADGvIVGS~~~~ 245 (251)
-..+.++.+...|+|++++++. ..+.++++|+.+.-.+++-.||+++ +..+++. +|-++||+.+-+
T Consensus 116 ~v~~~a~~a~~~G~~GvV~sat------~~~e~~~ir~~~~~f~~v~pGI~~~g~~~~~a~~~Gad~iVvGr~I~~ 185 (215)
T 3ve9_A 116 FYPYLREVARRVNPKGFVAPAT------RPSMISRVKGDFPDKLVISPGVGTQGAKPGIALCHGADYEIVGRSVYQ 185 (215)
T ss_dssp GHHHHHHHHHHHCCSEEECCTT------SHHHHHHHHHHCTTSEEEECCTTSTTCCTTHHHHTTCSEEEECHHHHT
T ss_pred HHHHHHHHHHHcCCCceeeCCC------CHHHHHHHHHhCCCcEEEcCCCCcCcCCHHHHHHcCCCEEEeCHHHcC
Confidence 3556666676678999887644 2556778888763378888999876 6666664 999999987754
|
| >3vkj_A Isopentenyl-diphosphate delta-isomerase; type 2 isopentenyl diphosphate isomerase; HET: FNR; 1.70A {Sulfolobus shibatae} PDB: 2zrv_A* 2zrw_A* 2zrx_A* 2zry_A* 2zrz_A* 3b03_A* 3b04_A* 3b05_A* 3b06_A* 2zru_A* | Back alignment and structure |
|---|
Probab=91.05 E-value=0.19 Score=45.81 Aligned_cols=39 Identities=13% Similarity=0.436 Sum_probs=34.7
Q ss_pred HHHHHHHHhcCCCCEEE---ecCCChHhHHHhhc--CCEEEEec
Q psy9039 203 VSQLMSVKNAVDLPILI---GSGVTSDNVEHYMT--ADALIIGS 241 (251)
Q Consensus 203 ~~~l~~vr~~~~~PV~v---G~GI~~~~v~~~~~--ADGvIVGS 241 (251)
.+.|+++++.+++||++ |+|++++.++.+.+ +|+++|+-
T Consensus 176 ~~~i~~i~~~~~vPVivK~vG~g~s~~~A~~l~~aGad~I~V~g 219 (368)
T 3vkj_A 176 LEKLRDISKELSVPIIVKESGNGISMETAKLLYSYGIKNFDTSG 219 (368)
T ss_dssp HHHHHHHHTTCSSCEEEECSSSCCCHHHHHHHHHTTCCEEECCC
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHHhCCCCEEEEeC
Confidence 57899999999999999 99999999988886 99999943
|
| >4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B* | Back alignment and structure |
|---|
Probab=90.98 E-value=0.29 Score=46.89 Aligned_cols=57 Identities=19% Similarity=0.334 Sum_probs=45.4
Q ss_pred hccccEEEecCCCCCCCC-CHHHHHHHHhcC-CCCEEEecCCChHhHHHhhc--CCEEEEec
Q psy9039 184 FFLSDGLIITGNATGDPA-DVSQLMSVKNAV-DLPILIGSGVTSDNVEHYMT--ADALIIGS 241 (251)
Q Consensus 184 ~~~~D~v~VTG~~~g~~~-~~~~l~~vr~~~-~~PV~vG~GI~~~~v~~~~~--ADGvIVGS 241 (251)
..|+|.+++-.++ |... -.+.++.+|+.. ++||++|-=.|.+.+..++. ||++-||-
T Consensus 291 ~AGvD~iviD~ah-Ghs~~v~~~i~~ik~~~p~~~viaGNVaT~e~a~~Li~aGAD~vkVGi 351 (556)
T 4af0_A 291 EAGLDVVVLDSSQ-GNSVYQIEFIKWIKQTYPKIDVIAGNVVTREQAAQLIAAGADGLRIGM 351 (556)
T ss_dssp HTTCCEEEECCSC-CCSHHHHHHHHHHHHHCTTSEEEEEEECSHHHHHHHHHHTCSEEEECS
T ss_pred hcCCcEEEEeccc-cccHHHHHHHHHHHhhCCcceEEeccccCHHHHHHHHHcCCCEEeecC
Confidence 4699999998775 4433 357888899876 78888777779999999986 99999983
|
| >1eep_A Inosine 5'-monophosphate dehydrogenase; alpha-beta barrel, TIM barrel, IMPDH, IMP dehydrogenase, LOO purine biosynthesis, oxidoreductase; 2.40A {Borrelia burgdorferi} SCOP: c.1.5.1 | Back alignment and structure |
|---|
Probab=90.96 E-value=0.36 Score=44.21 Aligned_cols=64 Identities=22% Similarity=0.313 Sum_probs=45.4
Q ss_pred HHHHHHhhhccccEEEecCCCCCCCC-CHHHHHHHHhcC-CCCEEEecCCChHhHHHhhc--CCEEEEe
Q psy9039 176 TETAKAASFFLSDGLIITGNATGDPA-DVSQLMSVKNAV-DLPILIGSGVTSDNVEHYMT--ADALIIG 240 (251)
Q Consensus 176 ~~~a~~a~~~~~D~v~VTG~~~g~~~-~~~~l~~vr~~~-~~PV~vG~GI~~~~v~~~~~--ADGvIVG 240 (251)
.+.++.+...|+|++.+-.. .+.+. ..+.++++|+.+ ++||+++++.+.+.+..+.+ +|+++||
T Consensus 155 ~~~a~~~~~~G~d~i~i~~~-~g~~~~~~e~i~~ir~~~~~~pviv~~v~~~~~a~~a~~~Gad~I~vg 222 (404)
T 1eep_A 155 IERVEELVKAHVDILVIDSA-HGHSTRIIELIKKIKTKYPNLDLIAGNIVTKEAALDLISVGADCLKVG 222 (404)
T ss_dssp HHHHHHHHHTTCSEEEECCS-CCSSHHHHHHHHHHHHHCTTCEEEEEEECSHHHHHHHHTTTCSEEEEC
T ss_pred HHHHHHHHHCCCCEEEEeCC-CCChHHHHHHHHHHHHHCCCCeEEEcCCCcHHHHHHHHhcCCCEEEEC
Confidence 33444444568999887211 13222 247788999988 89999977778888888876 9999994
|
| >3krs_A Triosephosphate isomerase; ssgcid, SBRI, emerald biostructures, university of washingto niaid, I structural genomics; 1.55A {Cryptosporidium parvum iowa II} | Back alignment and structure |
|---|
Probab=90.56 E-value=0.082 Score=46.36 Aligned_cols=32 Identities=28% Similarity=0.549 Sum_probs=28.5
Q ss_pred CCCEEEecCCChHhHHHhhc---CCEEEEeceEee
Q psy9039 214 DLPILIGSGVTSDNVEHYMT---ADALIIGSHFKQ 245 (251)
Q Consensus 214 ~~PV~vG~GI~~~~v~~~~~---ADGvIVGS~~~~ 245 (251)
+++|+-||+++++|+.+++. .||+.||++-.+
T Consensus 226 ~vrILYGGSV~~~N~~el~~~~diDG~LVGgASL~ 260 (271)
T 3krs_A 226 NLRIIYGGSVTPDNCNELIKCADIDGFLVGGASLK 260 (271)
T ss_dssp HCCEEECSCCCTTTHHHHHHSTTCCEEEESGGGGS
T ss_pred CccEEEcCCcCHHHHHHHhcCCCCCEEEeeHHhhh
Confidence 48999999999999999983 999999987555
|
| >3qst_A Triosephosphate isomerase, putative; TIM barrel; 1.75A {Trichomonas vaginalis} PDB: 3qsr_A | Back alignment and structure |
|---|
Probab=90.55 E-value=0.075 Score=46.19 Aligned_cols=32 Identities=22% Similarity=0.453 Sum_probs=28.3
Q ss_pred CCCEEEecCCChHhHHHhhc---CCEEEEeceEee
Q psy9039 214 DLPILIGSGVTSDNVEHYMT---ADALIIGSHFKQ 245 (251)
Q Consensus 214 ~~PV~vG~GI~~~~v~~~~~---ADGvIVGS~~~~ 245 (251)
+++|+-||+++++|+.+++. .||+.||++=.+
T Consensus 207 ~vrIlYGGSV~~~N~~~l~~~~diDG~LVGgASL~ 241 (255)
T 3qst_A 207 KVRILYGGSVKPNNCNELAACPDVDGFLVGGASLE 241 (255)
T ss_dssp HCEEEECSCCCTTTHHHHHHSTTCCEEEECGGGGS
T ss_pred cccEEEcCCcCHhHHHHHhcCCCCCEEEeeHHHhh
Confidence 48999999999999999983 999999987544
|
| >1w0m_A TIM, triosephosphate isomerase; glycolysis, gluconeogenesis; 2.5A {Thermoproteus tenax} SCOP: c.1.1.1 | Back alignment and structure |
|---|
Probab=90.36 E-value=0.12 Score=43.97 Aligned_cols=41 Identities=12% Similarity=0.245 Sum_probs=30.9
Q ss_pred HHHhcC-CCCEEEecCCChHhHHHhhc---CCEEEEeceEeecCe
Q psy9039 208 SVKNAV-DLPILIGSGVTSDNVEHYMT---ADALIIGSHFKQGGR 248 (251)
Q Consensus 208 ~vr~~~-~~PV~vG~GI~~~~v~~~~~---ADGvIVGS~~~~~g~ 248 (251)
.+|+.. +++++.||||++.|..+++. +||+-||+++++-.+
T Consensus 166 ~ir~~~~~~~ilyggsV~~~n~~~~~~~~giDG~LVG~a~l~a~~ 210 (226)
T 1w0m_A 166 LVSRHFPEVSVITGAGIESGDDVAAALRLGTRGVLLASAAVKAKD 210 (226)
T ss_dssp HHHHHCTTSEEEEESSCCSHHHHHHHHHTTCSEEEECHHHHTCSS
T ss_pred HHHhccCCCEEEEeCCCCcHHHHHHHHhCCCCEEEECHHHHCCcC
Confidence 344443 68999999998777666553 999999999877543
|
| >2yci_X 5-methyltetrahydrofolate corrinoid/iron sulfur PR methyltransferase; 1.78A {Carboxydothermus hydrogenoformans} PDB: 2ycj_A* 2yck_X* | Back alignment and structure |
|---|
Probab=90.16 E-value=0.63 Score=40.56 Aligned_cols=93 Identities=15% Similarity=0.132 Sum_probs=54.8
Q ss_pred HHHHhhCCCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHHHHHHHHcC
Q psy9039 36 AEIRKVLPPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQAAG 115 (251)
Q Consensus 36 ~~a~~~a~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g 115 (251)
+.+++.++.+++.|+ |.|-| ++-+ + ...-.+.+..+++.+++.++ +|+.+..+... +...++..+.|
T Consensus 34 ~~a~~~a~~~v~~GA-diIDI---g~~s-~-----~~eE~~rv~~vi~~l~~~~~--~pisIDT~~~~-v~~aal~a~~G 100 (271)
T 2yci_X 34 RPIQEWARRQAEKGA-HYLDV---NTGP-T-----ADDPVRVMEWLVKTIQEVVD--LPCCLDSTNPD-AIEAGLKVHRG 100 (271)
T ss_dssp HHHHHHHHHHHHTTC-SEEEE---ECCS-C-----SSCHHHHHHHHHHHHHHHCC--CCEEEECSCHH-HHHHHHHHCCS
T ss_pred HHHHHHHHHHHHCCC-CEEEE---cCCc-C-----chhHHHHHHHHHHHHHHhCC--CeEEEeCCCHH-HHHHHHHhCCC
Confidence 444555566778999 99976 2222 1 11234557788899998887 89999998532 43344332237
Q ss_pred ccceecccccccccCCCceeecCcchhHHHHHhcCC
Q psy9039 116 LDFIRAESFVFGHMADEGLMNAQAGPLLRYRKQIGA 151 (251)
Q Consensus 116 ~~Fir~~~~~~~~~~~~Gli~~da~e~~~~r~~l~~ 151 (251)
++.+-. ..|. ..+..+..+..+++++
T Consensus 101 a~iINd---------vs~~-~d~~~~~~~~~a~~~~ 126 (271)
T 2yci_X 101 HAMINS---------TSAD-QWKMDIFFPMAKKYEA 126 (271)
T ss_dssp CCEEEE---------ECSC-HHHHHHHHHHHHHHTC
T ss_pred CCEEEE---------CCCC-ccccHHHHHHHHHcCC
Confidence 777663 1111 1011456667777776
|
| >3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum} | Back alignment and structure |
|---|
Probab=90.00 E-value=0.36 Score=44.54 Aligned_cols=63 Identities=21% Similarity=0.395 Sum_probs=45.1
Q ss_pred HHHHHhhhccccEEEecCCCCCCCCC-HHHHHHHHhcCCCCEEEecCCChHhHHHhhc--CCEEEEe
Q psy9039 177 ETAKAASFFLSDGLIITGNATGDPAD-VSQLMSVKNAVDLPILIGSGVTSDNVEHYMT--ADALIIG 240 (251)
Q Consensus 177 ~~a~~a~~~~~D~v~VTG~~~g~~~~-~~~l~~vr~~~~~PV~vG~GI~~~~v~~~~~--ADGvIVG 240 (251)
+.++.+...|+|.+++.-. .+.+.. .+.++++|+..++||++|.-.|.+.+..+.+ ||+++||
T Consensus 147 e~~~~lveaGvdvIvldta-~G~~~~~~e~I~~ik~~~~i~Vi~g~V~t~e~A~~a~~aGAD~I~vG 212 (400)
T 3ffs_A 147 ERAKLLVEAGVDVIVLDSA-HGHSLNIIRTLKEIKSKMNIDVIVGNVVTEEATKELIENGADGIKVG 212 (400)
T ss_dssp HHHHHHHHHTCSEEEECCS-CCSBHHHHHHHHHHHTTCCCEEEEEEECSHHHHHHHHHTTCSEEEEC
T ss_pred HHHHHHHHcCCCEEEEeCC-CCCcccHHHHHHHHHhcCCCeEEEeecCCHHHHHHHHHcCCCEEEEe
Confidence 3344444569999987422 233332 4778899988889999865448899888886 9999996
|
| >1vqt_A Orotidine 5'-phosphate decarboxylase; TM0332, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.00A {Thermotoga maritima} SCOP: c.1.2.3 | Back alignment and structure |
|---|
Probab=89.95 E-value=0.33 Score=40.69 Aligned_cols=58 Identities=14% Similarity=0.296 Sum_probs=38.2
Q ss_pred HHHHHHHhhhccccEEEecCCCCCCCCCHHHHHHHHhcCCCCEEEecCCChHh----------HHHhhc--CCEEEEece
Q psy9039 175 ITETAKAASFFLSDGLIITGNATGDPADVSQLMSVKNAVDLPILIGSGVTSDN----------VEHYMT--ADALIIGSH 242 (251)
Q Consensus 175 i~~~a~~a~~~~~D~v~VTG~~~g~~~~~~~l~~vr~~~~~PV~vG~GI~~~~----------v~~~~~--ADGvIVGS~ 242 (251)
..+.++. ...|+| ++.+. +.++++|+.++.| ++-.||++++ ..+ ++ ||+++||+.
T Consensus 128 v~~~a~~-~e~G~d-vV~~~---------~~~~~ir~~~~~~-~v~pGI~~~~~~~dq~rv~t~~~-i~aGad~iVvGR~ 194 (213)
T 1vqt_A 128 MDRIEKL-NKLGCD-FVLPG---------PWAKALREKIKGK-ILVPGIRMEVKADDQKDVVTLEE-MKGIANFAVLGRE 194 (213)
T ss_dssp HHHHHHH-HHHTCE-EECCH---------HHHHHHTTTCCSC-EEECCBC---------CCBCHHH-HTTTCSEEEESHH
T ss_pred HHHHHHH-hcCCCE-EEEcH---------HHHHHHHHHCCCC-EEECCCCCCCCccchhhcCCHHH-HHCCCCEEEEChh
Confidence 3444555 446888 43332 5678889888778 6667997665 466 64 999999998
Q ss_pred Eee
Q psy9039 243 FKQ 245 (251)
Q Consensus 243 ~~~ 245 (251)
+-+
T Consensus 195 I~~ 197 (213)
T 1vqt_A 195 IYL 197 (213)
T ss_dssp HHT
T ss_pred hcC
Confidence 754
|
| >3gnn_A Nicotinate-nucleotide pyrophosphorylase; decode biostructures, ssgcid, niaid, SBRI, UWPPG, glycosyltransferase, transferase, structural genomics; 2.25A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=89.90 E-value=0.31 Score=43.22 Aligned_cols=63 Identities=13% Similarity=0.177 Sum_probs=44.8
Q ss_pred cHHHHHHHhhhccccEEEecCCCCCCCCCHHHHHHHHhc--CCCCEEEecCCChHhHHHhhc--CCEEEEeceE
Q psy9039 174 DITETAKAASFFLSDGLIITGNATGDPADVSQLMSVKNA--VDLPILIGSGVTSDNVEHYMT--ADALIIGSHF 243 (251)
Q Consensus 174 ~i~~~a~~a~~~~~D~v~VTG~~~g~~~~~~~l~~vr~~--~~~PV~vG~GI~~~~v~~~~~--ADGvIVGS~~ 243 (251)
++++ ++.|...|+|.+-.=- .+.+.++++.+. .++++.+.||||++|++++.. +|++.|||..
T Consensus 218 tlde-~~eAl~aGaD~I~LDn------~~~~~l~~av~~i~~~v~ieaSGGI~~~~i~~~a~tGVD~isvG~lt 284 (298)
T 3gnn_A 218 TLDQ-LRTALAHGARSVLLDN------FTLDMMRDAVRVTEGRAVLEVSGGVNFDTVRAIAETGVDRISIGALT 284 (298)
T ss_dssp SHHH-HHHHHHTTCEEEEEES------CCHHHHHHHHHHHTTSEEEEEESSCSTTTHHHHHHTTCSEEECGGGG
T ss_pred CHHH-HHHHHHcCCCEEEECC------CCHHHHHHHHHHhCCCCeEEEEcCCCHHHHHHHHHcCCCEEEECCee
Confidence 4443 4555556899886621 234555543332 368899999999999999996 9999999854
|
| >3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=89.90 E-value=0.85 Score=38.59 Aligned_cols=66 Identities=20% Similarity=0.276 Sum_probs=49.0
Q ss_pred CcccHHHHHHHhhhccccEEEecCCCCCCCCCHHHHHHHHhcCCCCEE----E-e----cCCCh--HhHHHhhc--CCEE
Q psy9039 171 ADVDITETAKAASFFLSDGLIITGNATGDPADVSQLMSVKNAVDLPIL----I-G----SGVTS--DNVEHYMT--ADAL 237 (251)
Q Consensus 171 ~~~~i~~~a~~a~~~~~D~v~VTG~~~g~~~~~~~l~~vr~~~~~PV~----v-G----~GI~~--~~v~~~~~--ADGv 237 (251)
+...+.++|+.++..|+.++-+. ..+.|+++|+.+++||+ - . +=|++ +++.++.. ||.+
T Consensus 34 ~~~~~~~~A~a~~~~Ga~~i~~~--------~~~~i~~ir~~v~~Pvig~~k~~~~~~~~~I~~~~~~i~~~~~aGad~I 105 (229)
T 3q58_A 34 KPEIVAAMAQAAASAGAVAVRIE--------GIENLRTVRPHLSVPIIGIIKRDLTGSPVRITPYLQDVDALAQAGADII 105 (229)
T ss_dssp SHHHHHHHHHHHHHTTCSEEEEE--------SHHHHHHHGGGCCSCEEEECBCCCSSCCCCBSCSHHHHHHHHHHTCSEE
T ss_pred CcchHHHHHHHHHHCCCcEEEEC--------CHHHHHHHHHhcCCCEEEEEeecCCCCceEeCccHHHHHHHHHcCCCEE
Confidence 34566777777777899998763 37889999999999987 1 1 22454 67888876 9999
Q ss_pred EEeceEe
Q psy9039 238 IIGSHFK 244 (251)
Q Consensus 238 IVGS~~~ 244 (251)
++++...
T Consensus 106 ~l~~~~~ 112 (229)
T 3q58_A 106 AFDASFR 112 (229)
T ss_dssp EEECCSS
T ss_pred EECcccc
Confidence 9988753
|
| >1h7n_A 5-aminolaevulinic acid dehydratase; lyase, aldolase, TIM barrel, tetrapyrrole synthesis; HET: SHF; 1.6A {Saccharomyces cerevisiae} SCOP: c.1.10.3 PDB: 1h7p_A* 1h7r_A* 1ohl_A* 1qml_A 1qnv_A 1w31_A* 1h7o_A* 1eb3_A* 1gjp_A* 1ylv_A* 1aw5_A | Back alignment and structure |
|---|
Probab=89.78 E-value=1.6 Score=39.20 Aligned_cols=40 Identities=20% Similarity=0.215 Sum_probs=27.7
Q ss_pred HHHHHHhh-h--ccccEEEecCCCCCCCCCHHHHHHHHhcC-CCCEEE
Q psy9039 176 TETAKAAS-F--FLSDGLIITGNATGDPADVSQLMSVKNAV-DLPILI 219 (251)
Q Consensus 176 ~~~a~~a~-~--~~~D~v~VTG~~~g~~~~~~~l~~vr~~~-~~PV~v 219 (251)
.+..+.+. . -|+|.+.|- .+ -+-++.++++|+.+ ++|+.+
T Consensus 243 ~EAlre~~~Di~EGAD~vMVK---Pa-l~YLDIi~~vk~~~p~~P~aa 286 (342)
T 1h7n_A 243 GLARRALERDMSEGADGIIVK---PS-TFYLDIMRDASEICKDLPICA 286 (342)
T ss_dssp HHHHHHHHHHHHTTCSEEEEE---SS-GGGHHHHHHHHHHTTTSCEEE
T ss_pred HHHHHHHHhhHHhCCCeEEEe---cC-ccHHHHHHHHHHhccCCCeEE
Confidence 34445543 2 599999883 22 12368899999999 999986
|
| >4g1k_A Triosephosphate isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel, TPIA; 2.35A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=89.15 E-value=0.18 Score=44.20 Aligned_cols=29 Identities=28% Similarity=0.497 Sum_probs=26.8
Q ss_pred CCCEEEecCCChHhHHHhhc---CCEEEEece
Q psy9039 214 DLPILIGSGVTSDNVEHYMT---ADALIIGSH 242 (251)
Q Consensus 214 ~~PV~vG~GI~~~~v~~~~~---ADGvIVGS~ 242 (251)
++||+-||.++++|+.+++. .||+.||.+
T Consensus 226 ~~rIlYGGSV~~~N~~el~~~~dIDG~LVGgA 257 (272)
T 4g1k_A 226 HVSLLYGGSVKADNAAELFGQPDIDGGLIGGA 257 (272)
T ss_dssp TSCEEECSCCCTTTHHHHHTSTTCCEEEECGG
T ss_pred CceEEEcCCcCHhHHHHHhcCCCCCEEEechH
Confidence 58999999999999999994 999999965
|
| >2qiw_A PEP phosphonomutase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: P6G; 1.80A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=89.06 E-value=2.5 Score=36.43 Aligned_cols=176 Identities=14% Similarity=0.122 Sum_probs=87.5
Q ss_pred cCCCCccEEEEee-----cCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEE---eeCChHHHHHHHHHcCcc
Q psy9039 46 VPVGVQHGVIVEN-----MHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQI---LSGCNKAALATAQAAGLD 117 (251)
Q Consensus 46 ~~~Gv~D~i~ieN-----~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~---~~N~~~~~~~ia~a~g~~ 117 (251)
++.|+ |+|.+.- .+|. .| -++++..-|...++.+.+.++ .|+.+.+ |-+.+.....-....|+.
T Consensus 37 ~~aG~-dai~vg~~s~a~~~G~--pD---~~~vt~~em~~~~~~I~r~~~--~pviaD~~~Gyg~~~~~~~~~l~~aGa~ 108 (255)
T 2qiw_A 37 EEAGF-SGLTIGSHPVADATGS--SD---GENMNFADYMAVVKKITSAVS--IPVSVDVESGYGLSPADLIAQILEAGAV 108 (255)
T ss_dssp HHTTC-SCEEECHHHHHHHTTC--CT---TTCSCHHHHHHHHHHHHHHCS--SCEEEECTTCTTCCHHHHHHHHHHTTCC
T ss_pred HHcCC-CEEEEChHHHHHhCCC--CC---CCCcCHHHHHHHHHHHHhcCC--CCEEeccCCCcCcHHHHHHHHHHHcCCc
Confidence 45799 9998862 2333 22 368888889999999998888 6877754 222211111111113333
Q ss_pred ceecccccccccCCCceeecC---cchhH---HHHHhcCCCcchhhhhhHhh-ccCCCCCCcccHHHHHHHhh-h--ccc
Q psy9039 118 FIRAESFVFGHMADEGLMNAQ---AGPLL---RYRKQIGADNVLVFTDIKKK-HSSHAITADVDITETAKAAS-F--FLS 187 (251)
Q Consensus 118 Fir~~~~~~~~~~~~Gli~~d---a~e~~---~~r~~l~~~~i~i~a~v~~k-~~~~~~~~~~~i~~~a~~a~-~--~~~ 187 (251)
-+... +..-....-+.+- .+.+. +.++..|. +.++.+..... .+.. .....+++..+.+. + .|+
T Consensus 109 gv~iE---d~~~~~~k~l~~~~e~~~~I~a~~~a~~~~g~-~~~v~aRtd~~~~g~~--~~~~~~~~ai~ra~a~~eAGA 182 (255)
T 2qiw_A 109 GINVE---DVVHSEGKRVREAQEHADYIAAARQAADVAGV-DVVINGRTDAVKLGAD--VFEDPMVEAIKRIKLMEQAGA 182 (255)
T ss_dssp EEEEC---SEEGGGTTEECCHHHHHHHHHHHHHHHHHHTC-CCEEEEEECHHHHCTT--TSSSHHHHHHHHHHHHHHHTC
T ss_pred EEEEC---CCCCCCCCcccCHHHHHHHHHHHHHHHHhcCC-CeEEEEEechhhccCC--cchHHHHHHHHHHHHHHHcCC
Confidence 33321 0000000001110 11111 12222233 33444422110 1110 00123566666665 3 699
Q ss_pred cEEEecCCCCCCCCCHHHHHHHHhcCCCCEEEe---cC----CChHhHHHhhcCCEEEEec
Q psy9039 188 DGLIITGNATGDPADVSQLMSVKNAVDLPILIG---SG----VTSDNVEHYMTADALIIGS 241 (251)
Q Consensus 188 D~v~VTG~~~g~~~~~~~l~~vr~~~~~PV~vG---~G----I~~~~v~~~~~ADGvIVGS 241 (251)
|++.+-|. ++.+.++++.+.+++|+.+- ++ .+.++++++- ..-++.|+
T Consensus 183 d~i~~e~~-----~~~~~~~~i~~~~~~P~n~~~~~~~~~p~~~~~eL~~lG-v~~v~~~~ 237 (255)
T 2qiw_A 183 RSVYPVGL-----STAEQVERLVDAVSVPVNITAHPVDGHGAGDLATLAGLG-VRRVTFGP 237 (255)
T ss_dssp SEEEECCC-----CSHHHHHHHHTTCSSCBEEECBTTTBBTTBCHHHHHHTT-CCEEECTT
T ss_pred cEEEEcCC-----CCHHHHHHHHHhCCCCEEEEecCCCCCCCCCHHHHHHcC-CCEEEEHH
Confidence 99999764 34678889988888887763 33 3444444431 66666554
|
| >1f6y_A 5-methyltetrahydrofolate corrinoid/iron sulfur PR methyltransferase; carbon dioxide fixation, cobalamin, methyltatrahydrofolate; 2.20A {Moorella thermoacetica} SCOP: c.1.21.2 PDB: 2e7f_A* 4djd_A* 4dje_A* 4djf_A* 2ogy_A* | Back alignment and structure |
|---|
Probab=89.00 E-value=1 Score=38.97 Aligned_cols=158 Identities=13% Similarity=0.068 Sum_probs=81.4
Q ss_pred HHHHhhCCCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHHHHHHHHcC
Q psy9039 36 AEIRKVLPPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQAAG 115 (251)
Q Consensus 36 ~~a~~~a~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g 115 (251)
+.+++.++.+++.|+ |.|-| ++- + ......+.+.|++..++..++ +|+.+..+... +...++..+.|
T Consensus 25 ~~a~~~a~~~v~~GA-diIDI---g~g--~----~~v~~~ee~~rvv~~i~~~~~--~pisIDT~~~~-v~~aAl~a~~G 91 (262)
T 1f6y_A 25 APVQEWARRQEEGGA-RALDL---NVG--P----AVQDKVSAMEWLVEVTQEVSN--LTLCLDSTNIK-AIEAGLKKCKN 91 (262)
T ss_dssp HHHHHHHHHHHHHTC-SEEEE---BCC----------CHHHHHHHHHHHHHTTCC--SEEEEECSCHH-HHHHHHHHCSS
T ss_pred HHHHHHHHHHHHCCC-cEEEE---CCC--C----CCCChHHHHHHHHHHHHHhCC--CeEEEeCCCHH-HHHHHHhhCCC
Confidence 445555566778999 99976 221 1 112245668889999988766 79999998532 44444433337
Q ss_pred ccceecccccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHhhccCCCCCCcccH---HHHHHHhhhcccc---E
Q psy9039 116 LDFIRAESFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSSHAITADVDI---TETAKAASFFLSD---G 189 (251)
Q Consensus 116 ~~Fir~~~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~k~~~~~~~~~~~i---~~~a~~a~~~~~D---~ 189 (251)
++.+-. ..|. .....+..+..+++++ .+-++. ....|.|. +.+.++ .+..+.+..+|++ -
T Consensus 92 a~iINd---------vs~~-~d~~~~~~~~~a~~~~-~vvlmh--~~~~G~p~-t~~~~~~~~~~~~~~a~~~Gi~~~~I 157 (262)
T 1f6y_A 92 RAMINS---------TNAE-REKVEKLFPLAVEHGA-ALIGLT--MNKTGIPK-DSDTRLAFAMELVAAADEFGLPMEDL 157 (262)
T ss_dssp CEEEEE---------ECSC-HHHHHHHHHHHHHTTC-EEEEES--CCSSCSCS-SHHHHHHHHHHHHHHHHHHTCCGGGE
T ss_pred CCEEEE---------CCCC-cccHHHHHHHHHHhCC-cEEEEc--CCCCCCCC-CHHHHHHHHHHHHHHHHHCCCCcccE
Confidence 777663 1121 1111256677777776 222221 01123332 111121 2222333335653 3
Q ss_pred EEecCC---CCCCCCC---HHHHHHHHhcC--CCCEEEe
Q psy9039 190 LIITGN---ATGDPAD---VSQLMSVKNAV--DLPILIG 220 (251)
Q Consensus 190 v~VTG~---~~g~~~~---~~~l~~vr~~~--~~PV~vG 220 (251)
++=.|. ..+.... ++.+.++|+.. ..|+++|
T Consensus 158 ilDPg~g~~g~~~~~~~~~l~~l~~l~~~~~pg~pvl~G 196 (262)
T 1f6y_A 158 YIDPLILPANVAQDHAPEVLKTLQQIKMLADPAPKTVLG 196 (262)
T ss_dssp EEECCCCCTTTCTTHHHHHHHHHHHHHTCCSSCCEEEEE
T ss_pred EEeCCCCcCCCChHHHHHHHHHHHHHHHHhCCCCCEEEe
Confidence 322332 2222222 34566777754 8999998
|
| >1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A* | Back alignment and structure |
|---|
Probab=88.95 E-value=0.6 Score=44.05 Aligned_cols=65 Identities=15% Similarity=0.253 Sum_probs=46.6
Q ss_pred HHHHHHHhhhccccEEEecCCCCCCCC-CHHHHHHHHhcC-CCCEEEecCCChHhHHHhhc--CCEEEEe
Q psy9039 175 ITETAKAASFFLSDGLIITGNATGDPA-DVSQLMSVKNAV-DLPILIGSGVTSDNVEHYMT--ADALIIG 240 (251)
Q Consensus 175 i~~~a~~a~~~~~D~v~VTG~~~g~~~-~~~~l~~vr~~~-~~PV~vG~GI~~~~v~~~~~--ADGvIVG 240 (251)
..+.++.+...|+|++.+-... |.+. ..+.++++|+.+ ++||++|.=.+.+.+..+.+ ||+++||
T Consensus 256 ~~~~a~~~~~aG~d~v~i~~~~-G~~~~~~~~i~~i~~~~~~~pvi~~~v~t~~~a~~l~~aGad~I~vg 324 (514)
T 1jcn_A 256 DKYRLDLLTQAGVDVIVLDSSQ-GNSVYQIAMVHYIKQKYPHLQVIGGNVVTAAQAKNLIDAGVDGLRVG 324 (514)
T ss_dssp HHHHHHHHHHTTCSEEEECCSC-CCSHHHHHHHHHHHHHCTTCEEEEEEECSHHHHHHHHHHTCSEEEEC
T ss_pred hHHHHHHHHHcCCCEEEeeccC-CcchhHHHHHHHHHHhCCCCceEecccchHHHHHHHHHcCCCEEEEC
Confidence 4455555555799999984433 3332 247799999998 89998754347888888876 9999994
|
| >3sr7_A Isopentenyl-diphosphate delta-isomerase; isopentenyl pyrophosphate isomerase, TIM-barrel; 2.04A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=88.46 E-value=0.63 Score=42.35 Aligned_cols=67 Identities=12% Similarity=0.134 Sum_probs=45.9
Q ss_pred HHHHHHHhhhccccEEEecCCC------CCCCCC---H-HHHHHHHhcCCCCEEEe---cCCChHhHHHhhc--CCEEEE
Q psy9039 175 ITETAKAASFFLSDGLIITGNA------TGDPAD---V-SQLMSVKNAVDLPILIG---SGVTSDNVEHYMT--ADALII 239 (251)
Q Consensus 175 i~~~a~~a~~~~~D~v~VTG~~------~g~~~~---~-~~l~~vr~~~~~PV~vG---~GI~~~~v~~~~~--ADGvIV 239 (251)
.++..+..+..++|++.+.-.. .....+ + +.|+++|+.+++||++- +|.+++.+..+.+ +|+++|
T Consensus 157 ~e~~~~~ve~~~adal~ihln~~qe~~~p~Gd~~~~~~~~~I~~l~~~~~~PVivK~vg~g~s~e~A~~l~~aGad~I~V 236 (365)
T 3sr7_A 157 YQAGLQAVRDLQPLFLQVHINLMQELLMPEGEREFRSWKKHLSDYAKKLQLPFILKEVGFGMDVKTIQTAIDLGVKTVDI 236 (365)
T ss_dssp HHHHHHHHHHHCCSCEEEEECHHHHHTSSSSCCCCHHHHHHHHHHHHHCCSCEEEEECSSCCCHHHHHHHHHHTCCEEEC
T ss_pred HHHHHHHHHhcCCCEEEEeccccccccCCCCCCcHHHHHHHHHHHHHhhCCCEEEEECCCCCCHHHHHHHHHcCCCEEEE
Confidence 3444444445689998775321 111222 2 67899999999999986 4467888888886 999999
Q ss_pred ec
Q psy9039 240 GS 241 (251)
Q Consensus 240 GS 241 (251)
+-
T Consensus 237 ~g 238 (365)
T 3sr7_A 237 SG 238 (365)
T ss_dssp CC
T ss_pred eC
Confidence 53
|
| >1ydn_A Hydroxymethylglutaryl-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative; 2.30A {Brucella melitensis} | Back alignment and structure |
|---|
Probab=88.40 E-value=1.1 Score=38.94 Aligned_cols=176 Identities=11% Similarity=0.060 Sum_probs=88.8
Q ss_pred CCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHHHHHHHHcCccceecc
Q psy9039 43 PPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQAAGLDFIRAE 122 (251)
Q Consensus 43 ~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g~~Fir~~ 122 (251)
+.|.+.|+ +.|++--+....|..-++ .....++++++..+ +|+.+.+ .| ...+.-|...|.+.++..
T Consensus 33 ~~L~~~Gv-~~IE~g~~~~~~~~p~~~-------~~~e~~~~i~~~~~--~~v~~l~-~n--~~~i~~a~~~G~~~V~i~ 99 (295)
T 1ydn_A 33 NRLSDCGY-ARIEATSFVSPKWVPQLA-------DSREVMAGIRRADG--VRYSVLV-PN--MKGYEAAAAAHADEIAVF 99 (295)
T ss_dssp HHHTTTTC-SEEEEEECSCTTTCGGGT-------THHHHHHHSCCCSS--SEEEEEC-SS--HHHHHHHHHTTCSEEEEE
T ss_pred HHHHHcCc-CEEEEccCcCcccccccc-------CHHHHHHHHHhCCC--CEEEEEe-CC--HHHHHHHHHCCCCEEEEE
Confidence 66788999 999873322211111011 12234455554433 5876665 44 455666667777776652
Q ss_pred ccccc---------ccCCCceeecCcchhHHHHHhcCCCcch-hhhh-hHhhccCCCCCCcccHHHHHHHhhhccccEEE
Q psy9039 123 SFVFG---------HMADEGLMNAQAGPLLRYRKQIGADNVL-VFTD-IKKKHSSHAITADVDITETAKAASFFLSDGLI 191 (251)
Q Consensus 123 ~~~~~---------~~~~~Gli~~da~e~~~~r~~l~~~~i~-i~a~-v~~k~~~~~~~~~~~i~~~a~~a~~~~~D~v~ 191 (251)
... ..+.+. ......+..++.++.|. .+. .++- +-..++.. ++...+.+.++.+...|+|.+.
T Consensus 100 --~~~S~~h~~~~~~~~~~e-~~~~~~~~v~~a~~~G~-~V~~~l~~~~~~e~~~~--~~~~~~~~~~~~~~~~G~d~i~ 173 (295)
T 1ydn_A 100 --ISASEGFSKANINCTIAE-SIERLSPVIGAAINDGL-AIRGYVSCVVECPYDGP--VTPQAVASVTEQLFSLGCHEVS 173 (295)
T ss_dssp --EESCHHHHHHHTSSCHHH-HHHHHHHHHHHHHHTTC-EEEEEEECSSEETTTEE--CCHHHHHHHHHHHHHHTCSEEE
T ss_pred --EecCHHHHHHHcCCCHHH-HHHHHHHHHHHHHHcCC-eEEEEEEEEecCCcCCC--CCHHHHHHHHHHHHhcCCCEEE
Confidence 110 000000 01124455677777765 222 0100 00011111 2334455555555567999987
Q ss_pred ecCCCCCCC-C-C-HHHHHHHHhcCC-CCEEE----ecCCChHhHHHhhc--CCEEE
Q psy9039 192 ITGNATGDP-A-D-VSQLMSVKNAVD-LPILI----GSGVTSDNVEHYMT--ADALI 238 (251)
Q Consensus 192 VTG~~~g~~-~-~-~~~l~~vr~~~~-~PV~v----G~GI~~~~v~~~~~--ADGvI 238 (251)
+.=+ .|.. | . .++++++++.++ +|+-+ .+|+...|....+. ++-+-
T Consensus 174 l~Dt-~G~~~P~~~~~lv~~l~~~~~~~~l~~H~Hn~~Gla~an~l~Ai~aG~~~vd 229 (295)
T 1ydn_A 174 LGDT-IGRGTPDTVAAMLDAVLAIAPAHSLAGHYHDTGGRALDNIRVSLEKGLRVFD 229 (295)
T ss_dssp EEET-TSCCCHHHHHHHHHHHHTTSCGGGEEEEEBCTTSCHHHHHHHHHHHTCCEEE
T ss_pred ecCC-CCCcCHHHHHHHHHHHHHhCCCCeEEEEECCCcchHHHHHHHHHHhCCCEEE
Confidence 7522 2322 2 2 366888888876 78766 46776666655553 66544
|
| >1zco_A 2-dehydro-3-deoxyphosphoheptonate aldolase; arabino-heptulosonate, synthase, shikimate, DAHP, DAH7P, DAH DAH7PS, lyase; HET: PEP; 2.25A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=88.40 E-value=3.6 Score=35.50 Aligned_cols=186 Identities=16% Similarity=0.171 Sum_probs=98.6
Q ss_pred cccccCCCCCCCcchHHHHHHHHHhhCCCCcCCCCccEEEEeecC--CCCccccCCCchHHHHHHHHHHHHHHHhCCCCc
Q psy9039 16 PYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQHGVIVENMH--DVPYVLEAESGPEITANMTRLCAEIRKVLPPSV 93 (251)
Q Consensus 16 p~~~~~pG~P~~~~~~~~i~~~a~~~a~~l~~~Gv~D~i~ieN~~--~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~ 93 (251)
||+-+ | |....|.+...+.+ +.+.++|+ |.|.++-+- -.||+.. |+. ..-.+++++++++.. +
T Consensus 24 ~~vIA--g-pc~~~~~e~a~~~a----~~l~~~Ga-~~vk~~~fkprts~~~~~---g~~--~egl~~l~~~~~~~G--l 88 (262)
T 1zco_A 24 FTIIA--G-PCSIESREQIMKVA----EFLAEVGI-KVLRGGAFKPRTSPYSFQ---GYG--EKALRWMREAADEYG--L 88 (262)
T ss_dssp CEEEE--E-CSBCCCHHHHHHHH----HHHHHTTC-CEEECBSSCCCSSTTSCC---CCT--HHHHHHHHHHHHHHT--C
T ss_pred cEEEE--e-CCCCCCHHHHHHHH----HHHHHcCC-CEEEEEecccCCCccccc---Ccc--HHHHHHHHHHHHHcC--C
Confidence 88888 5 77777755554444 55666899 999865441 1233322 321 233456677777777 7
Q ss_pred cEEEEEeeCChHHHHHHHHHcCccceecccccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHhhccCCCCCCcc
Q psy9039 94 PVGVQILSGCNKAALATAQAAGLDFIRAESFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSSHAITADV 173 (251)
Q Consensus 94 P~Gvn~~~N~~~~~~~ia~a~g~~Fir~~~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~k~~~~~~~~~~ 173 (251)
|+..-.+-.. +....... .++++++++.- ....+++...+.+. .|-+ |.|.. -
T Consensus 89 ~~~te~~d~~---~~~~l~~~-vd~~kIga~~~-----------~n~~ll~~~a~~~k-PV~l------k~G~~-----~ 141 (262)
T 1zco_A 89 VTVTEVMDTR---HVELVAKY-SDILQIGARNS-----------QNFELLKEVGKVEN-PVLL------KRGMG-----N 141 (262)
T ss_dssp EEEEECCCGG---GHHHHHHH-CSEEEECGGGT-----------TCHHHHHHHTTSSS-CEEE------ECCTT-----C
T ss_pred cEEEeeCCHH---hHHHHHhh-CCEEEECcccc-----------cCHHHHHHHHhcCC-cEEE------ecCCC-----C
Confidence 8888776432 33333333 68888743211 11223444444432 2222 33321 2
Q ss_pred cHHHHHHHhhh---ccc-cEEE-ecCCCC--CC---CCCHHHHHHHHhcCCCCEEEecCCC-h--H---hH-HHhh-c-C
Q psy9039 174 DITETAKAASF---FLS-DGLI-ITGNAT--GD---PADVSQLMSVKNAVDLPILIGSGVT-S--D---NV-EHYM-T-A 234 (251)
Q Consensus 174 ~i~~~a~~a~~---~~~-D~v~-VTG~~~--g~---~~~~~~l~~vr~~~~~PV~vG~GI~-~--~---~v-~~~~-~-A 234 (251)
+++++..+++. .|. +.+. --|.++ +. ..++..+..+|+.+++||++-..=+ . + .+ .+.. . |
T Consensus 142 t~~e~~~Av~~i~~~Gn~~i~L~~RG~~~~~~y~~~~v~L~ai~~lk~~~~~pVi~d~sH~~g~~~~v~~~~~aAva~Ga 221 (262)
T 1zco_A 142 TIQELLYSAEYIMAQGNENVILCERGIRTFETATRFTLDISAVPVVKELSHLPIIVDPSHPAGRRSLVIPLAKAAYAIGA 221 (262)
T ss_dssp CHHHHHHHHHHHHTTTCCCEEEEECCBCCSCCSSSSBCCTTHHHHHHHHBSSCEEECSSTTTCSGGGHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHCCCCeEEEEECCCCCCCCcChhhcCHHHHHHHHhhhCCCEEEEcCCCCCccchHHHHHHHHHHcCC
Confidence 45665555442 354 3332 223211 11 1245678888988899987654331 1 1 22 2222 3 9
Q ss_pred CEEEEeceE
Q psy9039 235 DALIIGSHF 243 (251)
Q Consensus 235 DGvIVGS~~ 243 (251)
||+++=+.|
T Consensus 222 ~Gl~iE~H~ 230 (262)
T 1zco_A 222 DGIMVEVHP 230 (262)
T ss_dssp SEEEEEBCS
T ss_pred CEEEEEecC
Confidence 999999886
|
| >1eix_A Orotidine 5'-monophosphate decarboxylase; alpha-beta-barrel, protein-inhibitor complex, homodimer, lyase; HET: BMQ; 2.50A {Escherichia coli} SCOP: c.1.2.3 PDB: 1jjk_A* 1l2u_A | Back alignment and structure |
|---|
Probab=88.20 E-value=0.39 Score=40.97 Aligned_cols=52 Identities=19% Similarity=0.313 Sum_probs=38.5
Q ss_pred ccccEEEecCCCCCCCCCHHHHHHHHhcC-CCCEEEecCCChH-----------hHHHhhc--CCEEEEeceEee
Q psy9039 185 FLSDGLIITGNATGDPADVSQLMSVKNAV-DLPILIGSGVTSD-----------NVEHYMT--ADALIIGSHFKQ 245 (251)
Q Consensus 185 ~~~D~v~VTG~~~g~~~~~~~l~~vr~~~-~~PV~vG~GI~~~-----------~v~~~~~--ADGvIVGS~~~~ 245 (251)
+|.++++.+. .+ ++++|+.. +.++.+-+||+++ ++.++++ ||.+++||++-+
T Consensus 161 ~G~~g~V~~~--------~e-i~~lr~~~~~~~i~v~gGI~~~g~~~~dq~rv~t~~~a~~aGad~iVvGr~I~~ 226 (245)
T 1eix_A 161 CGLDGVVCSA--------QE-AVRFKQVFGQEFKLVTPGIRPQGSEAGDQRRIMTPEQALSAGVDYMVIGRPVTQ 226 (245)
T ss_dssp TTCSEEECCG--------GG-HHHHHHHHCSSSEEEECCBCCTTCCCTTCCSCBCHHHHHHTTCSEEEECHHHHT
T ss_pred cCCCeEEeCH--------HH-HHHHHHhcCCCCEEEECCcCCCCCCccchhccCCHHHHHHcCCCEEEECHHHcC
Confidence 5777754432 12 55566554 4789999999988 8888885 999999998764
|
| >1ypf_A GMP reductase; GUAC, purines, pyrimidines, nucleosides, nucleotides, nucleo nucleoside interconversions, spine, structural genomics; 1.80A {Bacillus anthracis} PDB: 2a1y_A* | Back alignment and structure |
|---|
Probab=87.93 E-value=0.61 Score=41.62 Aligned_cols=61 Identities=16% Similarity=0.172 Sum_probs=40.6
Q ss_pred HHhhhcc--ccEEEecCCCCCCCC-CHHHHHHHHhcCC-CCEEEecCCChHhHHHhhc--CCEEEEec
Q psy9039 180 KAASFFL--SDGLIITGNATGDPA-DVSQLMSVKNAVD-LPILIGSGVTSDNVEHYMT--ADALIIGS 241 (251)
Q Consensus 180 ~~a~~~~--~D~v~VTG~~~g~~~-~~~~l~~vr~~~~-~PV~vG~GI~~~~v~~~~~--ADGvIVGS 241 (251)
+.....+ +|.+.+.... |.+. ..+.++++|+.++ .||+.|+..+.+.++.+.+ ||+++|++
T Consensus 112 ~~~~~~g~~~~~i~i~~~~-G~~~~~~~~i~~lr~~~~~~~vi~G~v~s~e~A~~a~~aGad~Ivvs~ 178 (336)
T 1ypf_A 112 QQLAAEHLTPEYITIDIAH-GHSNAVINMIQHIKKHLPESFVIAGNVGTPEAVRELENAGADATKVGI 178 (336)
T ss_dssp HHHHHTTCCCSEEEEECSS-CCSHHHHHHHHHHHHHCTTSEEEEEEECSHHHHHHHHHHTCSEEEECS
T ss_pred HHHHhcCCCCCEEEEECCC-CCcHHHHHHHHHHHHhCCCCEEEECCcCCHHHHHHHHHcCCCEEEEec
Confidence 3333356 8887764432 3322 3478999999986 4555443448898888886 99999954
|
| >3ru6_A Orotidine 5'-phosphate decarboxylase; structural genomics, center for structural genomics of infec diseases (csgid), TIM-barrel; 1.80A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=87.88 E-value=0.65 Score=41.24 Aligned_cols=59 Identities=14% Similarity=0.144 Sum_probs=41.2
Q ss_pred HHHHhhhccccEEEecCCCCCCCCCHHHHHHHHhcC-CCCEEEecCCChH-----------hHHHhhc--CCEEEEeceE
Q psy9039 178 TAKAASFFLSDGLIITGNATGDPADVSQLMSVKNAV-DLPILIGSGVTSD-----------NVEHYMT--ADALIIGSHF 243 (251)
Q Consensus 178 ~a~~a~~~~~D~v~VTG~~~g~~~~~~~l~~vr~~~-~~PV~vG~GI~~~-----------~v~~~~~--ADGvIVGS~~ 243 (251)
.|+.+...|+|+++.+.. + ++++|+.+ +-.+++-.||.++ +..++.. ||.+||||++
T Consensus 163 lA~~a~~~G~dGvV~s~~------E---~~~IR~~~~~~fl~VTPGIr~qG~~~~DQ~Rv~t~~~a~~aGAd~iVvGr~I 233 (303)
T 3ru6_A 163 FSKISYENGLDGMVCSVF------E---SKKIKEHTSSNFLTLTPGIRPFGETNDDQKRVANLAMARENLSDYIVVGRPI 233 (303)
T ss_dssp HHHHHHHTTCSEEECCTT------T---HHHHHHHSCTTSEEEECCCCTTC--------CCSHHHHHHTTCSEEEECHHH
T ss_pred HHHHHHHcCCCEEEECHH------H---HHHHHHhCCCccEEECCCcCcccCCcccccccCCHHHHHHcCCCEEEEChHH
Confidence 444555578999766432 2 45677766 4578889999765 5666664 9999999987
Q ss_pred ee
Q psy9039 244 KQ 245 (251)
Q Consensus 244 ~~ 245 (251)
-+
T Consensus 234 ~~ 235 (303)
T 3ru6_A 234 YK 235 (303)
T ss_dssp HT
T ss_pred hC
Confidence 54
|
| >2yyu_A Orotidine 5'-phosphate decarboxylase; TIM barrel, structural genomics, NPPSFA, national project on structural and functional analyses; HET: C5P; 2.20A {Geobacillus kaustophilus} PDB: 2yyt_A* | Back alignment and structure |
|---|
Probab=87.81 E-value=0.42 Score=40.79 Aligned_cols=52 Identities=13% Similarity=0.204 Sum_probs=38.5
Q ss_pred ccccEEEecCCCCCCCCCHHHHHHHHhcC-CCCEEEecCCChH-----------hHHHhhc--CCEEEEeceEee
Q psy9039 185 FLSDGLIITGNATGDPADVSQLMSVKNAV-DLPILIGSGVTSD-----------NVEHYMT--ADALIIGSHFKQ 245 (251)
Q Consensus 185 ~~~D~v~VTG~~~g~~~~~~~l~~vr~~~-~~PV~vG~GI~~~-----------~v~~~~~--ADGvIVGS~~~~ 245 (251)
+|.++++.+. .+ ++++|+.. ..++.+-+||+++ ++.++++ ||.+++||++.+
T Consensus 155 ~G~~g~V~~~--------~e-i~~lr~~~~~~~i~V~gGI~~~g~~~~dq~rv~t~~~a~~aGad~iVvGr~I~~ 220 (246)
T 2yyu_A 155 SGLDGVVCSA--------NE-AAFIKERCGASFLAVTPGIRFADDAAHDQVRVVTPRKARALGSDYIVIGRSLTR 220 (246)
T ss_dssp HTCCEEECCH--------HH-HHHHHHHHCTTSEEEECCCCCCC-------CCCCHHHHHHHTCSEEEECHHHHT
T ss_pred hCCCEEEeCH--------HH-HHHHHHhcCCCCEEEeCCcCCCCCCcccccccCCHHHHHHcCCCEEEECHhhcC
Confidence 5777754332 23 66677665 3569999999887 7888875 999999998764
|
| >1l6s_A Porphobilinogen synthase; dehydratase, lyase; HET: CME DSB; 1.70A {Escherichia coli} SCOP: c.1.10.3 PDB: 1i8j_A* 1l6y_A* 1b4e_A | Back alignment and structure |
|---|
Probab=87.71 E-value=1.9 Score=38.33 Aligned_cols=40 Identities=18% Similarity=0.203 Sum_probs=28.2
Q ss_pred HHHHHHhh-h--ccccEEEecCCCCCCCCCHHHHHHHHhcCCCCEEE
Q psy9039 176 TETAKAAS-F--FLSDGLIITGNATGDPADVSQLMSVKNAVDLPILI 219 (251)
Q Consensus 176 ~~~a~~a~-~--~~~D~v~VTG~~~g~~~~~~~l~~vr~~~~~PV~v 219 (251)
.+..+.+. . -|+|.+.|- .+ -+-++.++++|+.+++|+.+
T Consensus 226 ~EAlre~~~Di~EGAD~vMVK---Pa-l~YLDIi~~vk~~~~~P~aa 268 (323)
T 1l6s_A 226 REAIRESLLDEAQGADCLMVK---PA-GAYLDIVRELRERTELPIGA 268 (323)
T ss_dssp HHHHHHHHHHHHTTCSBEEEE---SC-TTCHHHHHHHHTTCSSCEEE
T ss_pred HHHHHHHHhhHHhCCceEEEe---cC-cchhHHHHHHHHhcCCCeEE
Confidence 34444443 2 599999883 22 23478899999999999986
|
| >3oa3_A Aldolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, pathogenic fungus; 1.60A {Coccidioides immitis} | Back alignment and structure |
|---|
Probab=87.57 E-value=1.8 Score=38.11 Aligned_cols=56 Identities=18% Similarity=0.200 Sum_probs=37.3
Q ss_pred HHhhhccccEEEe-cCCCCCCCC--CHHHHHHHHh--cCCCCEEEecCC-ChHhHHHhhc--CC
Q psy9039 180 KAASFFLSDGLII-TGNATGDPA--DVSQLMSVKN--AVDLPILIGSGV-TSDNVEHYMT--AD 235 (251)
Q Consensus 180 ~~a~~~~~D~v~V-TG~~~g~~~--~~~~l~~vr~--~~~~PV~vG~GI-~~~~v~~~~~--AD 235 (251)
+.+...|+|.+=+ ||..++..+ +.++++++.+ ..++||-+.||| |.+++.+++. |+
T Consensus 195 ~ia~eaGADfVKTSTGf~~~GAT~edv~lmr~~v~~~g~~v~VKAAGGIrt~edAl~mi~aGA~ 258 (288)
T 3oa3_A 195 VLSSLAGADYVKTSTGFNGPGASIENVSLMSAVCDSLQSETRVKASGGIRTIEDCVKMVRAGAE 258 (288)
T ss_dssp HHHHHTTCSEEECCCSSSSCCCCHHHHHHHHHHHHHSSSCCEEEEESSCCSHHHHHHHHHTTCS
T ss_pred HHHHHcCCCEEEcCCCCCCCCCCHHHHHHHHHHHHHhCCCceEEEeCCCCCHHHHHHHHHcCCc
Confidence 3344579999855 455433322 2344555443 247999999999 6899999986 87
|
| >2fli_A Ribulose-phosphate 3-epimerase; (beta/alpha)8-barrel, D- xylitol 5-phosphate, isomerase; HET: DX5; 1.80A {Streptococcus pyogenes} SCOP: c.1.2.2 | Back alignment and structure |
|---|
Probab=87.54 E-value=2 Score=35.19 Aligned_cols=69 Identities=14% Similarity=0.110 Sum_probs=47.7
Q ss_pred ccHHHHHHHhhhccccEEEe---cCC-CCCCCCCHHHHHHHHhcCCCCEEEecCCC-hH-hHHHhhc--CCEEEEec
Q psy9039 173 VDITETAKAASFFLSDGLII---TGN-ATGDPADVSQLMSVKNAVDLPILIGSGVT-SD-NVEHYMT--ADALIIGS 241 (251)
Q Consensus 173 ~~i~~~a~~a~~~~~D~v~V---TG~-~~g~~~~~~~l~~vr~~~~~PV~vG~GI~-~~-~v~~~~~--ADGvIVGS 241 (251)
.++.+.++.+...|+|.+.+ -|. ........+.++++|+.++.|+.+++.++ ++ .+..+.. +|++++..
T Consensus 16 ~~~~~~~~~~~~~G~~~i~~~~~dg~~~~~~~~g~~~i~~i~~~~~~~~~v~l~v~d~~~~i~~~~~~gad~v~vh~ 92 (220)
T 2fli_A 16 ANFASELARIEETDAEYVHIDIMDGQFVPNISFGADVVASMRKHSKLVFDCHLMVVDPERYVEAFAQAGADIMTIHT 92 (220)
T ss_dssp GGHHHHHHHHHHTTCCEEEEEEEBSSSSSCBCBCHHHHHHHHTTCCSEEEEEEESSSGGGGHHHHHHHTCSEEEEEG
T ss_pred HHHHHHHHHHHHcCCCEEEEEeecCCCCCccccCHHHHHHHHHhCCCCEEEEEeecCHHHHHHHHHHcCCCEEEEcc
Confidence 35566666666668887533 354 21123347889999998889999999994 54 5766665 99999964
|
| >3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A* | Back alignment and structure |
|---|
Probab=87.17 E-value=0.89 Score=43.06 Aligned_cols=64 Identities=14% Similarity=0.235 Sum_probs=45.3
Q ss_pred HHHHHhhhccccEEEecCCCCCCCCCHHHHHHHHhcC-CCCEEEecCCChHhHHHhhc--CCEEEEe
Q psy9039 177 ETAKAASFFLSDGLIITGNATGDPADVSQLMSVKNAV-DLPILIGSGVTSDNVEHYMT--ADALIIG 240 (251)
Q Consensus 177 ~~a~~a~~~~~D~v~VTG~~~g~~~~~~~l~~vr~~~-~~PV~vG~GI~~~~v~~~~~--ADGvIVG 240 (251)
+.++.....|+|.+++...+.....-.+.++++|+.. ++||++|.-.+.+.++.+.+ ||+++||
T Consensus 259 era~aLveaGvd~I~Id~a~g~~~~v~~~i~~i~~~~~~~~vi~g~v~t~e~a~~~~~aGad~i~vg 325 (511)
T 3usb_A 259 TRIDALVKASVDAIVLDTAHGHSQGVIDKVKEVRAKYPSLNIIAGNVATAEATKALIEAGANVVKVG 325 (511)
T ss_dssp HHHHHHHHTTCSEEEEECSCTTSHHHHHHHHHHHHHCTTSEEEEEEECSHHHHHHHHHHTCSEEEEC
T ss_pred HHHHHHHhhccceEEecccccchhhhhhHHHHHHHhCCCceEEeeeeccHHHHHHHHHhCCCEEEEC
Confidence 3344444569999999876532222247888999886 58888665448888888886 9999985
|
| >4dbe_A Orotidine 5'-phosphate decarboxylase; TIM barrel, orotidine 5'-monophosphate decarboxylase, inhibi lyase-lyase inhibitor complex; HET: BMP; 1.79A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=87.08 E-value=0.67 Score=39.13 Aligned_cols=64 Identities=14% Similarity=0.265 Sum_probs=45.4
Q ss_pred HHHHHHhhhccccEEEecCCCCCCCCCHHHHHHHHhcCCCCEEEecCCChH--hHHHhhc--CCEEEEeceEee
Q psy9039 176 TETAKAASFFLSDGLIITGNATGDPADVSQLMSVKNAVDLPILIGSGVTSD--NVEHYMT--ADALIIGSHFKQ 245 (251)
Q Consensus 176 ~~~a~~a~~~~~D~v~VTG~~~g~~~~~~~l~~vr~~~~~PV~vG~GI~~~--~v~~~~~--ADGvIVGS~~~~ 245 (251)
.+.++.+...|+|++++++. ..+.++++|+.++--+++-.||.++ +..+++. +|-+|||..+-+
T Consensus 125 ~~~a~~a~~~g~~GvV~sat------~p~e~~~ir~~~~~~~~vtPGI~~~g~tp~~a~~~Gad~iVVGR~I~~ 192 (222)
T 4dbe_A 125 DYIKNVIREISPKGIVVGGT------KLDHITQYRRDFEKMTIVSPGMGSQGGSYGDAVCAGADYEIIGRSIYN 192 (222)
T ss_dssp HHHHHHHHHHCCSEEEECTT------CHHHHHHHHHHCTTCEEEECCBSTTSBCTTHHHHHTCSEEEECHHHHT
T ss_pred HHHHHHHHHhCCCEEEECCC------CHHHHHHHHHhCCCCEEEcCCcccCccCHHHHHHcCCCEEEECHHhcC
Confidence 45566666678999887653 3466778888764367788899765 5666664 999999987643
|
| >2v82_A 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; lyase, kdpgal; HET: KDP; 2.1A {Escherichia coli} PDB: 2v81_A* | Back alignment and structure |
|---|
Probab=87.05 E-value=0.68 Score=38.04 Aligned_cols=65 Identities=18% Similarity=0.184 Sum_probs=44.8
Q ss_pred cHHHHHHHhhhccccEEEecCCCCCCCCCHHHHHHHHhcCCCCEEEecC-C-ChHhHHHhhc--CCEEEEec
Q psy9039 174 DITETAKAASFFLSDGLIITGNATGDPADVSQLMSVKNAVDLPILIGSG-V-TSDNVEHYMT--ADALIIGS 241 (251)
Q Consensus 174 ~i~~~a~~a~~~~~D~v~VTG~~~g~~~~~~~l~~vr~~~~~PV~vG~G-I-~~~~v~~~~~--ADGvIVGS 241 (251)
...+.++.+...|+|.+-++=.. ....+.++++++..++|+++|.| + +++++..++. ||++.+|+
T Consensus 20 ~~~~~~~~~~~~G~~~i~l~~~~---~~~~~~i~~i~~~~~~~l~vg~g~~~~~~~i~~a~~~Gad~V~~~~ 88 (212)
T 2v82_A 20 EALAHVGAVIDAGFDAVEIPLNS---PQWEQSIPAIVDAYGDKALIGAGTVLKPEQVDALARMGCQLIVTPN 88 (212)
T ss_dssp HHHHHHHHHHHHTCCEEEEETTS---TTHHHHHHHHHHHHTTTSEEEEECCCSHHHHHHHHHTTCCEEECSS
T ss_pred HHHHHHHHHHHCCCCEEEEeCCC---hhHHHHHHHHHHhCCCCeEEEeccccCHHHHHHHHHcCCCEEEeCC
Confidence 34455555555689999885332 22346677777777889888644 4 6888888886 99998776
|
| >3l0g_A Nicotinate-nucleotide pyrophosphorylase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.05A {Ehrlichia chaffeensis} | Back alignment and structure |
|---|
Probab=86.90 E-value=0.84 Score=40.46 Aligned_cols=63 Identities=16% Similarity=0.185 Sum_probs=44.3
Q ss_pred cHHHHHHHhhhccccEEEecCCCCCCCCCHHHHHHHHhcC--CCCEEEecCCChHhHHHhhc--CCEEEEeceE
Q psy9039 174 DITETAKAASFFLSDGLIITGNATGDPADVSQLMSVKNAV--DLPILIGSGVTSDNVEHYMT--ADALIIGSHF 243 (251)
Q Consensus 174 ~i~~~a~~a~~~~~D~v~VTG~~~g~~~~~~~l~~vr~~~--~~PV~vG~GI~~~~v~~~~~--ADGvIVGS~~ 243 (251)
++ +.++.|...|+|.+-.-. .+.+.++++.+.. .+.+-+.||||++|++++.. +|.+.+|+..
T Consensus 216 tl-~e~~eAl~aGaDiImLDn------~s~~~l~~av~~~~~~v~leaSGGIt~~~i~~~A~tGVD~IsvGalt 282 (300)
T 3l0g_A 216 NI-SQVEESLSNNVDMILLDN------MSISEIKKAVDIVNGKSVLEVSGCVNIRNVRNIALTGVDYISIGCIT 282 (300)
T ss_dssp SH-HHHHHHHHTTCSEEEEES------CCHHHHHHHHHHHTTSSEEEEESSCCTTTHHHHHTTTCSEEECGGGT
T ss_pred CH-HHHHHHHHcCCCEEEECC------CCHHHHHHHHHhhcCceEEEEECCCCHHHHHHHHHcCCCEEEeCccc
Confidence 44 345556556899886632 2344454433322 58899999999999999997 9999999754
|
| >3ta6_A Triosephosphate isomerase; HET: FLC; 1.41A {Mycobacterium tuberculosis} SCOP: c.1.1.0 PDB: 3tao_A* 3gvg_A | Back alignment and structure |
|---|
Probab=86.81 E-value=0.69 Score=40.34 Aligned_cols=29 Identities=24% Similarity=0.478 Sum_probs=26.6
Q ss_pred CCCEEEecCCChHhHHHhhc---CCEEEEece
Q psy9039 214 DLPILIGSGVTSDNVEHYMT---ADALIIGSH 242 (251)
Q Consensus 214 ~~PV~vG~GI~~~~v~~~~~---ADGvIVGS~ 242 (251)
+++|+-||.++++|+++++. .||+.||.+
T Consensus 210 ~~rIlYGGSV~~~N~~el~~~~diDG~LVGgA 241 (267)
T 3ta6_A 210 TVRVLYGGSVNAKNVGDIVAQDDVDGGLVGGA 241 (267)
T ss_dssp TSCEEECSCCCTTTHHHHHTSTTCCEEEECGG
T ss_pred cceEEEcCCcCHhHHHHHhcCCCCCEEEechH
Confidence 58999999999999999984 999999965
|
| >1dbt_A Orotidine 5'-phosphate decarboxylase; UMP, TIM barrel, lyase; HET: U5P; 2.40A {Bacillus subtilis} SCOP: c.1.2.3 | Back alignment and structure |
|---|
Probab=86.78 E-value=0.5 Score=40.06 Aligned_cols=53 Identities=13% Similarity=0.172 Sum_probs=39.1
Q ss_pred hccccEEEecCCCCCCCCCHHHHHHHHhcC-CCCEEEecCCChHhH-----------HHhhc--CCEEEEeceEee
Q psy9039 184 FFLSDGLIITGNATGDPADVSQLMSVKNAV-DLPILIGSGVTSDNV-----------EHYMT--ADALIIGSHFKQ 245 (251)
Q Consensus 184 ~~~~D~v~VTG~~~g~~~~~~~l~~vr~~~-~~PV~vG~GI~~~~v-----------~~~~~--ADGvIVGS~~~~ 245 (251)
.+|.++++.+. +.++++|+.. +.++.+-+||++++. .++++ ||.+++||++.+
T Consensus 153 ~~G~~g~v~~~---------~~i~~lr~~~~~~~i~v~gGI~~~~~~~~dq~rv~tp~~a~~aGad~iVvGr~I~~ 219 (239)
T 1dbt_A 153 ESGLDGVVCSV---------HEAKAIYQAVSPSFLTVTPGIRMSEDAANDQVRVATPAIAREKGSSAIVVGRSITK 219 (239)
T ss_dssp HTTCSEEECCG---------GGHHHHTTTSCTTCEEEECCBCCTTSCCTTCSSCBCHHHHHHTTCSEEEECHHHHT
T ss_pred HhCCCEEEECH---------HHHHHHHHhcCCCcEEEeCCcCCCCCCccceeccCCHHHHHHcCCCEEEEChhhcC
Confidence 35777754442 2466677766 478999999998776 66665 999999998764
|
| >3k13_A 5-methyltetrahydrofolate-homocysteine methyltrans; 5-methyltetrahydrofolate,methyltransferase, TIM barrel, STRU genomics, PSI-2; HET: MSE THH GOL; 2.00A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=86.74 E-value=0.51 Score=41.85 Aligned_cols=95 Identities=21% Similarity=0.095 Sum_probs=53.4
Q ss_pred HHHHhhCCCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHH---HhCCCCccEEEEEeeCChHHHHHHHH
Q psy9039 36 AEIRKVLPPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIR---KVLPPSVPVGVQILSGCNKAALATAQ 112 (251)
Q Consensus 36 ~~a~~~a~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr---~~~~~~~P~Gvn~~~N~~~~~~~ia~ 112 (251)
+.+++.++.+++.|+ |.|-| |. |. .++ + -.+.|.|++..++ +..+ +|+.+..+... +...++..
T Consensus 37 ~~a~~~A~~~v~~GA-diIDI-g~-g~---~~v-~---~~eem~rvv~~i~~~~~~~~--vpisIDT~~~~-V~eaaL~~ 103 (300)
T 3k13_A 37 DEALSIARQQVEDGA-LVIDV-NM-DD---GLL-D---ARTEMTTFLNLIMSEPEIAR--VPVMIDSSKWE-VIEAGLKC 103 (300)
T ss_dssp HHHHHHHHHHHHTTC-SEEEE-EC-CC---TTS-C---HHHHHHHHHHHHHTCHHHHT--SCEEEECSCHH-HHHHHHHH
T ss_pred HHHHHHHHHHHHCCC-CEEEE-CC-CC---CCC-C---HHHHHHHHHHHHHHhhhcCC--CeEEEeCCCHH-HHHHHHHh
Confidence 444555566778999 99976 22 21 111 2 3445777666665 4456 79999998643 54555543
Q ss_pred HcCccceecccccccccCCCceeecCcchhHHHHHhcCC
Q psy9039 113 AAGLDFIRAESFVFGHMADEGLMNAQAGPLLRYRKQIGA 151 (251)
Q Consensus 113 a~g~~Fir~~~~~~~~~~~~Gli~~da~e~~~~r~~l~~ 151 (251)
+.|++.+-.- .+ .. ..+...+..+..+++++
T Consensus 104 ~~Ga~iINdI--s~----~~--~d~~~~~~~~l~a~~ga 134 (300)
T 3k13_A 104 LQGKSIVNSI--SL----KE--GEEVFLEHARIIKQYGA 134 (300)
T ss_dssp CSSCCEEEEE--CS----TT--CHHHHHHHHHHHHHHTC
T ss_pred cCCCCEEEeC--Cc----cc--CChhHHHHHHHHHHhCC
Confidence 3576665530 00 00 01122256777888887
|
| >4adt_A Pyridoxine biosynthetic enzyme PDX1 homologue, PU; transferase, pyridoxal 5-phosphate biosynthesis; 2.42A {Plasmodium berghei} PDB: 4adu_A* 4ads_A | Back alignment and structure |
|---|
Probab=86.65 E-value=1.2 Score=39.42 Aligned_cols=63 Identities=17% Similarity=0.171 Sum_probs=43.2
Q ss_pred HHHHHHHhhhccccEEEe-cCC----C-CC---CCCCHHHHHHHHhcCCCCEEEecCCC-hHhHHHhhc--CCEE
Q psy9039 175 ITETAKAASFFLSDGLII-TGN----A-TG---DPADVSQLMSVKNAVDLPILIGSGVT-SDNVEHYMT--ADAL 237 (251)
Q Consensus 175 i~~~a~~a~~~~~D~v~V-TG~----~-~g---~~~~~~~l~~vr~~~~~PV~vG~GI~-~~~v~~~~~--ADGv 237 (251)
..++|+..+..|+|++.+ |-. + .+ ...+.+.|+++|+.+++||+.+.++. -+.++.+.. ||.+
T Consensus 30 ~~e~A~~ye~~GA~~lsvLe~~~~Di~~~~g~~R~~~~~~i~~i~~~v~iPvl~k~~i~~ide~qil~aaGAD~I 104 (297)
T 4adt_A 30 NVEQAKIAEKAGAIGVMILENIPSELRNTDGVARSVDPLKIEEIRKCISINVLAKVRIGHFVEAQILEELKVDML 104 (297)
T ss_dssp SHHHHHHHHHHTCSEEEECCCCC-----CCCCCCCCCHHHHHHHHTTCCSEEEEEEETTCHHHHHHHHHTTCSEE
T ss_pred cHHHHHHHHHcCCCEEEEecCCCCcchhcCCcccCCCHHHHHHHHHhcCCCEEEeccCCcHHHHHHHHHcCCCEE
Confidence 346666666678888754 311 1 11 12368999999999999999998884 555555554 9998
|
| >1gox_A (S)-2-hydroxy-acid oxidase, peroxisomal; oxidoreductase (oxygen(A)); HET: FMN; 2.00A {Spinacia oleracea} SCOP: c.1.4.1 PDB: 1gyl_A* 1al8_A* 1al7_A* 2cdh_0 | Back alignment and structure |
|---|
Probab=86.20 E-value=2.6 Score=38.01 Aligned_cols=40 Identities=18% Similarity=0.354 Sum_probs=34.2
Q ss_pred CHHHHHHHHhcCCCCEEEecCCChHhHHHhhc--CCEEEEec
Q psy9039 202 DVSQLMSVKNAVDLPILIGSGVTSDNVEHYMT--ADALIIGS 241 (251)
Q Consensus 202 ~~~~l~~vr~~~~~PV~vG~GI~~~~v~~~~~--ADGvIVGS 241 (251)
.++.++++|+.+++||++++-.+++.+..+.+ +|+++|+.
T Consensus 213 ~~~~i~~l~~~~~~pv~vK~~~~~e~a~~a~~~Gad~I~vs~ 254 (370)
T 1gox_A 213 SWKDVAWLQTITSLPILVKGVITAEDARLAVQHGAAGIIVSN 254 (370)
T ss_dssp CHHHHHHHHHHCCSCEEEECCCSHHHHHHHHHTTCSEEEECC
T ss_pred hHHHHHHHHHHhCCCEEEEecCCHHHHHHHHHcCCCEEEECC
Confidence 46789999999999999876668988888886 99999975
|
| >3bul_A Methionine synthase; transferase, reactivation conformation, cobalamin, intermodular interactions, amino-acid biosynthesis, cobalt; HET: B12; 2.30A {Escherichia coli} SCOP: a.46.1.1 c.23.6.1 d.173.1.1 PDB: 3iv9_A* 3iva_A* 1k7y_A* 1k98_A* 1bmt_A* | Back alignment and structure |
|---|
Probab=85.98 E-value=0.77 Score=44.31 Aligned_cols=76 Identities=12% Similarity=0.137 Sum_probs=52.2
Q ss_pred chhhhhhHhhccCCC--CCCcccHHHHHHHhhhccccEEEecCCCCCCCCCH-HHHHHHHhcC-CCCEEEecCC-ChHhH
Q psy9039 154 VLVFTDIKKKHSSHA--ITADVDITETAKAASFFLSDGLIITGNATGDPADV-SQLMSVKNAV-DLPILIGSGV-TSDNV 228 (251)
Q Consensus 154 i~i~a~v~~k~~~~~--~~~~~~i~~~a~~a~~~~~D~v~VTG~~~g~~~~~-~~l~~vr~~~-~~PV~vG~GI-~~~~v 228 (251)
..+++.+...+|..+ ...+.+.+++.+.+....+|.+++|+..+.....+ +.++++++.. ++||++||.. +.+..
T Consensus 115 ~~iva~~L~~~G~eVi~LG~~vP~e~iv~aa~~~~~diVgLS~l~t~~~~~m~~~i~~Lr~~g~~i~ViVGGa~~~~~~a 194 (579)
T 3bul_A 115 KNIVGVVLQCNNYEIVDLGVMVPAEKILRTAKEVNADLIGLSGLITPSLDEMVNVAKEMERQGFTIPLLIGGATTSKAHT 194 (579)
T ss_dssp HHHHHHHHHTTTCEEEECCSSBCHHHHHHHHHHHTCSEEEEECCSTHHHHHHHHHHHHHHHTTCCSCEEEESTTCCHHHH
T ss_pred HHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEEecCCCCHHHHHHHHHHHHHcCCCCeEEEEccccchhhh
Confidence 345555555555443 34567888988888878999999999765433333 4566777654 8999999998 56554
Q ss_pred H
Q psy9039 229 E 229 (251)
Q Consensus 229 ~ 229 (251)
+
T Consensus 195 ~ 195 (579)
T 3bul_A 195 A 195 (579)
T ss_dssp H
T ss_pred h
Confidence 4
|
| >3flu_A DHDPS, dihydrodipicolinate synthase; TIM barrel, beta-alpha-barrel, amino-acid biosynthesis, diaminopimelate biosynthesis; 2.00A {Neisseria meningitidis serogroup B} SCOP: c.1.10.0 | Back alignment and structure |
|---|
Probab=85.95 E-value=11 Score=32.70 Aligned_cols=171 Identities=15% Similarity=0.148 Sum_probs=76.5
Q ss_pred CCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHHHHH---HHHcCccce
Q psy9039 43 PPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALAT---AQAAGLDFI 119 (251)
Q Consensus 43 ~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~i---a~a~g~~Fi 119 (251)
+-|+++|+ |||.+-=-.|=-++. .-.+..+-+..+++.++. .+|+.+.+-.|....+... |...|++.+
T Consensus 35 ~~li~~Gv-~gl~~~GttGE~~~L---s~~Er~~v~~~~~~~~~g----rvpviaGvg~~~t~~ai~la~~a~~~Gadav 106 (297)
T 3flu_A 35 DWHIENGT-DGIVAVGTTGESATL---SVEEHTAVIEAVVKHVAK----RVPVIAGTGANNTVEAIALSQAAEKAGADYT 106 (297)
T ss_dssp HHHHHTTC-CEEEESSTTTTGGGS---CHHHHHHHHHHHHHHHTT----SSCEEEECCCSSHHHHHHHHHHHHHTTCSEE
T ss_pred HHHHHcCC-CEEEeCccccCcccC---CHHHHHHHHHHHHHHhCC----CCcEEEeCCCcCHHHHHHHHHHHHHcCCCEE
Confidence 55678999 999862111111111 122333333333333332 2688888777764444443 333444443
Q ss_pred ecccccccccCCCceeecCcchhHHHHHhcCC-Ccchh-hhhhHhhccCCCCCCcccHHHHHHHhhhccccEEEecCCCC
Q psy9039 120 RAESFVFGHMADEGLMNAQAGPLLRYRKQIGA-DNVLV-FTDIKKKHSSHAITADVDITETAKAASFFLSDGLIITGNAT 197 (251)
Q Consensus 120 r~~~~~~~~~~~~Gli~~da~e~~~~r~~l~~-~~i~i-~a~v~~k~~~~~~~~~~~i~~~a~~a~~~~~D~v~VTG~~~ 197 (251)
-.- ..-...+..+++.++.+.+-. -++.+ ++++-...+.. .+.+.+.+.++.-.+- |-+.
T Consensus 107 lv~--------~P~y~~~~~~~l~~~f~~va~a~~lPiilYn~P~~tg~~-----l~~~~~~~La~~pniv-----giKd 168 (297)
T 3flu_A 107 LSV--------VPYYNKPSQEGIYQHFKTIAEATSIPMIIYNVPGRTVVS-----MTNDTILRLAEIPNIV-----GVKE 168 (297)
T ss_dssp EEE--------CCCSSCCCHHHHHHHHHHHHHHCCSCEEEEECHHHHSSC-----CCHHHHHHHTTSTTEE-----EEEE
T ss_pred EEC--------CCCCCCCCHHHHHHHHHHHHHhCCCCEEEEECCchhccC-----CCHHHHHHHHcCCCEE-----EEEe
Confidence 321 111112234455555444311 12222 33333233443 2344444444322222 2221
Q ss_pred CCCCCHHHHHHHHhcC--CCCEEEecCCChHhHHHhhc-CCEEEEece
Q psy9039 198 GDPADVSQLMSVKNAV--DLPILIGSGVTSDNVEHYMT-ADALIIGSH 242 (251)
Q Consensus 198 g~~~~~~~l~~vr~~~--~~PV~vG~GI~~~~v~~~~~-ADGvIVGS~ 242 (251)
...++..+.++++.+ +.-|+.|. ..--...+.. ++|+|-|++
T Consensus 169 -ssgd~~~~~~~~~~~~~~f~v~~G~--d~~~l~~l~~G~~G~is~~a 213 (297)
T 3flu_A 169 -ASGNIGSNIELINRAPEGFVVLSGD--DHTALPFMLCGGHGVITVAA 213 (297)
T ss_dssp -CSCCHHHHHHHHHHSCTTCEEEECC--GGGHHHHHHTTCCEEEESGG
T ss_pred -CCCCHHHHHHHHHhcCCCeEEEECc--HHHHHHHHhCCCCEEEechH
Confidence 123566777776655 45555543 2222333444 999998865
|
| >2nzl_A Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, GOX, GOX1, structural genomics, structural genom consortium, SGC, oxidoreductase; HET: FMN; 1.35A {Homo sapiens} PDB: 2rdu_A* 2rdt_A* 2rdw_A* 2w0u_A* | Back alignment and structure |
|---|
Probab=85.51 E-value=1.7 Score=39.68 Aligned_cols=40 Identities=10% Similarity=0.280 Sum_probs=31.5
Q ss_pred CHHHHHHHHhcCCCCEEEecCCChHhHHHhhc--CCEEEEec
Q psy9039 202 DVSQLMSVKNAVDLPILIGSGVTSDNVEHYMT--ADALIIGS 241 (251)
Q Consensus 202 ~~~~l~~vr~~~~~PV~vG~GI~~~~v~~~~~--ADGvIVGS 241 (251)
.++.++++|+.+++||++.+-.+++.+..+.+ +|+++|+.
T Consensus 240 ~~~~i~~lr~~~~~PvivKgv~~~e~A~~a~~aGad~I~vs~ 281 (392)
T 2nzl_A 240 SWEDIKWLRRLTSLPIVAKGILRGDDAREAVKHGLNGILVSN 281 (392)
T ss_dssp CHHHHHHHC--CCSCEEEEEECCHHHHHHHHHTTCCEEEECC
T ss_pred HHHHHHHHHHhhCCCEEEEecCCHHHHHHHHHcCCCEEEeCC
Confidence 46789999999999999985448888888875 99999953
|
| >1o66_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; structural genomics; HET: MSE; 1.75A {Neisseria meningitidis serogroup B} SCOP: c.1.12.8 PDB: 1o68_A* | Back alignment and structure |
|---|
Probab=84.68 E-value=5.7 Score=34.66 Aligned_cols=149 Identities=10% Similarity=0.019 Sum_probs=74.7
Q ss_pred CcCCCCccEEEEe-----ecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCcc-EEEEEeeC----ChHHHHHHHHHc
Q psy9039 45 SVPVGVQHGVIVE-----NMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVP-VGVQILSG----CNKAALATAQAA 114 (251)
Q Consensus 45 l~~~Gv~D~i~ie-----N~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P-~Gvn~~~N----~~~~~~~ia~a~ 114 (251)
+.++|+ |.|.+- ..+|.| + -+|++..-|...++.+++.++ .| +.+.+=+. .+..++.-|
T Consensus 33 ~e~aG~-d~ilvGdSl~~~~lG~~--d---t~~vTldemi~h~~aV~r~~~--~~~vvaD~pfgsy~~s~~~a~~na--- 101 (275)
T 1o66_A 33 MDDAGV-EMLLVGDSLGMAVQGRK--S---TLPVSLRDMCYHTECVARGAK--NAMIVSDLPFGAYQQSKEQAFAAA--- 101 (275)
T ss_dssp HHHTTC-CEEEECTTHHHHTTCCS--S---STTCCHHHHHHHHHHHHHHCS--SSEEEEECCTTSSSSCHHHHHHHH---
T ss_pred HHHcCC-CEEEECHHHHHHHcCCC--C---CCCCCHHHHHHHHHHHHhhCC--CCeEEEECCCCCccCCHHHHHHHH---
Confidence 468999 999863 233332 2 367888889999999998877 44 44442220 111112111
Q ss_pred CccceecccccccccCCCceeecCcchhHHHHHhcCCCcchhhhhh--Hhhc-----cCCCCCCcccHHHHHHHhh---h
Q psy9039 115 GLDFIRAESFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDI--KKKH-----SSHAITADVDITETAKAAS---F 184 (251)
Q Consensus 115 g~~Fir~~~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v--~~k~-----~~~~~~~~~~i~~~a~~a~---~ 184 (251)
.++++ .|.+|+-..+..+..+.-+.+-...|.+++.+ .|+. +.-....+.+.+++.+.|. .
T Consensus 102 -~rl~k--------aGa~aVklEdg~e~~~~I~al~~agIpV~gHiGLtPQs~~~~ggf~v~grt~~a~~~i~rA~a~~e 172 (275)
T 1o66_A 102 -AELMA--------AGAHMVKLEGGVWMAETTEFLQMRGIPVCAHIGLTPQSVFAFGGYKVQGRGGKAQALLNDAKAHDD 172 (275)
T ss_dssp -HHHHH--------TTCSEEEEECSGGGHHHHHHHHHTTCCEEEEEESCGGGTTC-----------CHHHHHHHHHHHHH
T ss_pred -HHHHH--------cCCcEEEECCcHHHHHHHHHHHHcCCCeEeeeccCceeecccCCeEEEeChHHHHHHHHHHHHHHH
Confidence 13333 22344333333333322222222244443211 2221 0000011123345555554 3
Q ss_pred ccccEEEecCCCCCCCCCHHHHHHHHhcCCCCEEE
Q psy9039 185 FLSDGLIITGNATGDPADVSQLMSVKNAVDLPILI 219 (251)
Q Consensus 185 ~~~D~v~VTG~~~g~~~~~~~l~~vr~~~~~PV~v 219 (251)
.|||++++-+.. .++.+++.+.+++|++-
T Consensus 173 AGA~~ivlE~vp------~~~a~~it~~l~iP~ig 201 (275)
T 1o66_A 173 AGAAVVLMECVL------AELAKKVTETVSCPTIG 201 (275)
T ss_dssp TTCSEEEEESCC------HHHHHHHHHHCSSCEEE
T ss_pred cCCcEEEEecCC------HHHHHHHHHhCCCCEEE
Confidence 699999997742 35677888889999874
|
| >3kxq_A Triosephosphate isomerase; ssgcid, NIH, niaid, SBRI, UW, gluconeogenesis, glycolysis, pentose shunt; 1.60A {Bartonella henselae} | Back alignment and structure |
|---|
Probab=84.67 E-value=0.42 Score=41.91 Aligned_cols=29 Identities=21% Similarity=0.456 Sum_probs=26.8
Q ss_pred CCCEEEecCCChHhHHHhhc---CCEEEEece
Q psy9039 214 DLPILIGSGVTSDNVEHYMT---ADALIIGSH 242 (251)
Q Consensus 214 ~~PV~vG~GI~~~~v~~~~~---ADGvIVGS~ 242 (251)
++||+-||.++++|+++++. .||+.||.+
T Consensus 227 ~~rIlYGGSV~~~Na~el~~~~dIDG~LVGgA 258 (275)
T 3kxq_A 227 KIRLLYGGSVKPSNAFELLSTAHVNGALIGGA 258 (275)
T ss_dssp TSCEEECSCCCTTTHHHHHTSTTCCEEEESGG
T ss_pred cceEEEcCCcCHhHHHHHHcCCccceEEeehh
Confidence 58999999999999999994 999999965
|
| >3dxi_A Putative aldolase; TIM barrel, 11107N, PSI2, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Bacteroides vulgatus atcc 8482} | Back alignment and structure |
|---|
Probab=84.32 E-value=2 Score=38.24 Aligned_cols=168 Identities=12% Similarity=0.049 Sum_probs=82.8
Q ss_pred CCCcCCCCccEEEEeecCCCCccccCC--C-chHHHHHHHHHHHHHHHhCCCCccEEEEEeeCCh-----HHHHHHHHHc
Q psy9039 43 PPSVPVGVQHGVIVENMHDVPYVLEAE--S-GPEITANMTRLCAEIRKVLPPSVPVGVQILSGCN-----KAALATAQAA 114 (251)
Q Consensus 43 ~~l~~~Gv~D~i~ieN~~~~Pf~~p~~--~-gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~-----~~~~~ia~a~ 114 (251)
+.|.+.|+ |.||+ |.|- .|-+ + .|-. +-...++++++... .++..++ .|.+ +..+-.+.+.
T Consensus 31 ~~L~~aGv-~~IEv----g~~~-~p~~~f~~~~~~--~~~e~l~~i~~~~~--~~~~~L~-r~~~~~~~dv~~~~~a~~~ 99 (320)
T 3dxi_A 31 LAMNELPI-DYLEV----GYRN-KPSKEYMGKFGY--TPVSVLKHLRNIST--KKIAIML-NEKNTTPEDLNHLLLPIIG 99 (320)
T ss_dssp HHHHTTTC-CEEEE----EECC-SCCSSCCCHHHH--CCHHHHHHHHHHCC--SEEEEEE-EGGGCCGGGHHHHHGGGTT
T ss_pred HHHHHhCC-CEEEE----eccc-CCcccccccccc--ChHHHHHHHhhccC--CeEEEEe-cCCCCChhhHHHHHHhhhc
Confidence 56888999 99986 5442 2211 0 1211 11345566666433 4776664 3321 3333333445
Q ss_pred CccceecccccccccCCCceeecCcchhHHHHHhcCCCcchh-hhhhHhhccCCCCCCcccHHHHHHHhhhccccEEEec
Q psy9039 115 GLDFIRAESFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLV-FTDIKKKHSSHAITADVDITETAKAASFFLSDGLIIT 193 (251)
Q Consensus 115 g~~Fir~~~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i-~a~v~~k~~~~~~~~~~~i~~~a~~a~~~~~D~v~VT 193 (251)
|.+.+|+.. .... ...+.+..++.++.|.+ +.. +.+.. +....+..+..+.+ ...|+|.+.+.
T Consensus 100 Gvd~~ri~~----~~~n----le~~~~~v~~ak~~G~~-v~~~~~~~~-----~~~~~~~~l~~~~~--~~~G~~~i~l~ 163 (320)
T 3dxi_A 100 LVDMIRIAI----DPQN----IDRAIVLAKAIKTMGFE-VGFNVMYMS-----KWAEMNGFLSKLKA--IDKIADLFCMV 163 (320)
T ss_dssp TCSEEEEEE----CGGG----HHHHHHHHHHHHTTTCE-EEEEECCTT-----TGGGSTTSGGGGGG--GTTTCSEEEEE
T ss_pred CCCEEEEEe----cHHH----HHHHHHHHHHHHHCCCE-EEEEEEeCC-----CCCCHHHHHHHHHH--hhCCCCEEEEC
Confidence 556666421 0000 11134455566777652 322 22211 11011112222211 13589998886
Q ss_pred CCCCCCCC-CH-HHHHHHHhcCCCCEEEe----cCCChHh-HHHhhc-CCEE
Q psy9039 194 GNATGDPA-DV-SQLMSVKNAVDLPILIG----SGVTSDN-VEHYMT-ADAL 237 (251)
Q Consensus 194 G~~~g~~~-~~-~~l~~vr~~~~~PV~vG----~GI~~~~-v~~~~~-ADGv 237 (251)
.+.-...| .. ++++.+|+.+++|+-+- +|....| ++.+.. ||-+
T Consensus 164 Dt~G~~~P~~~~~lv~~l~~~~~~~i~~H~Hn~~G~a~an~laA~~aGa~~v 215 (320)
T 3dxi_A 164 DSFGGITPKEVKNLLKEVRKYTHVPVGFHGHDNLQLGLINSITAIDDGIDFI 215 (320)
T ss_dssp CTTSCCCHHHHHHHHHHHHHHCCSCEEEECBCTTSCHHHHHHHHHHTTCSEE
T ss_pred cccCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCCccHHHHHHHHHHhCCCEE
Confidence 65322223 23 67888999888998888 7885555 444434 6643
|
| >1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A* | Back alignment and structure |
|---|
Probab=84.28 E-value=0.54 Score=36.45 Aligned_cols=53 Identities=13% Similarity=0.071 Sum_probs=38.5
Q ss_pred CcccHHHHHHHhhhccccEEEecCCCCCCCCCH-HHHHHHHhcC--CCCEEEecCC
Q psy9039 171 ADVDITETAKAASFFLSDGLIITGNATGDPADV-SQLMSVKNAV--DLPILIGSGV 223 (251)
Q Consensus 171 ~~~~i~~~a~~a~~~~~D~v~VTG~~~g~~~~~-~~l~~vr~~~--~~PV~vG~GI 223 (251)
.+.+.+++++.+....+|.+++|...+...... +.++.+|+.. ++||++||..
T Consensus 39 ~~~p~e~~v~~a~~~~~d~v~lS~~~~~~~~~~~~~i~~l~~~g~~~i~v~vGG~~ 94 (137)
T 1ccw_A 39 VLSPQELFIKAAIETKADAILVSSLYGQGEIDCKGLRQKCDEAGLEGILLYVGGNI 94 (137)
T ss_dssp EEECHHHHHHHHHHHTCSEEEEEECSSTHHHHHTTHHHHHHHTTCTTCEEEEEESC
T ss_pred CCCCHHHHHHHHHhcCCCEEEEEecCcCcHHHHHHHHHHHHhcCCCCCEEEEECCC
Confidence 356788888888878999999998765332222 4566777653 6999999875
|
| >1req_A Methylmalonyl-COA mutase; isomerase, intramolecular transferase; HET: B12 DCA; 2.00A {Propionibacterium freudenreichii subspshermanii} SCOP: c.1.19.1 c.23.6.1 PDB: 2req_A* 3req_A* 4req_A* 6req_A* 7req_A* 5req_A* 1e1c_A* | Back alignment and structure |
|---|
Probab=84.14 E-value=0.92 Score=44.92 Aligned_cols=70 Identities=16% Similarity=0.061 Sum_probs=48.5
Q ss_pred CCcccHHHHHHHhhhccccEEEecCCCCCCCCCH-HHHHHHHhcC--CCCEEEecCCChHhHHHhhc--CCEEEE
Q psy9039 170 TADVDITETAKAASFFLSDGLIITGNATGDPADV-SQLMSVKNAV--DLPILIGSGVTSDNVEHYMT--ADALII 239 (251)
Q Consensus 170 ~~~~~i~~~a~~a~~~~~D~v~VTG~~~g~~~~~-~~l~~vr~~~--~~PV~vG~GI~~~~v~~~~~--ADGvIV 239 (251)
..+.+.+++++.+....+|.+++|+..+.....+ +.++.+|+.- ++||++||.+-.+....+.. +|+++-
T Consensus 631 G~~v~~eeiv~aA~e~~adiVglSsl~~~~~~~~~~vi~~L~~~G~~~i~VivGG~~p~~d~~~l~~~GaD~~f~ 705 (727)
T 1req_A 631 PLFQTPEETARQAVEADVHVVGVSSLAGGHLTLVPALRKELDKLGRPDILITVGGVIPEQDFDELRKDGAVEIYT 705 (727)
T ss_dssp CTTBCHHHHHHHHHHTTCSEEEEEECSSCHHHHHHHHHHHHHHTTCTTSEEEEEESCCGGGHHHHHHTTEEEEEC
T ss_pred CCCCCHHHHHHHHHHcCCCEEEEeeecHhHHHHHHHHHHHHHhcCCCCCEEEEcCCCccccHHHHHhCCCCEEEc
Confidence 3456788888888888999999999865443333 5566777764 68998888674443333332 888775
|
| >3fkr_A L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL family, complex, pyruvate, lyase; HET: KPI; 1.80A {Azospirillum brasilense} PDB: 3fkk_A | Back alignment and structure |
|---|
Probab=84.10 E-value=1.5 Score=38.73 Aligned_cols=58 Identities=16% Similarity=0.145 Sum_probs=36.8
Q ss_pred hccccEEEecCCCCCCCC--CH----HHHHHHHhcC--CCCEEEecCC-ChHh-HH---Hhhc--CCEEEEece
Q psy9039 184 FFLSDGLIITGNATGDPA--DV----SQLMSVKNAV--DLPILIGSGV-TSDN-VE---HYMT--ADALIIGSH 242 (251)
Q Consensus 184 ~~~~D~v~VTG~~~g~~~--~~----~~l~~vr~~~--~~PV~vG~GI-~~~~-v~---~~~~--ADGvIVGS~ 242 (251)
..|+|++++.|+ ||+.. +. +.++.+++.+ ++||++|-|- +.++ ++ .+.+ |||+.+-+-
T Consensus 40 ~~Gv~gl~v~Gt-TGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~A~~~Gadavlv~~P 112 (309)
T 3fkr_A 40 DAGSDGLCILAN-FSEQFAITDDERDVLTRTILEHVAGRVPVIVTTSHYSTQVCAARSLRAQQLGAAMVMAMPP 112 (309)
T ss_dssp HTTCSCEEESSG-GGTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSSHHHHHHHHHHHHHTTCSEEEECCS
T ss_pred HcCCCEEEECcc-ccCcccCCHHHHHHHHHHHHHHhCCCCcEEEecCCchHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 369999999886 35432 11 3355555554 6999999886 5433 33 2223 999988753
|
| >1vli_A Spore coat polysaccharide biosynthesis protein SP; 2636322, JCSG, protein structure initiative, BS SPSE, PSI; 2.38A {Bacillus subtilis} SCOP: b.85.1.1 c.1.10.6 | Back alignment and structure |
|---|
Probab=83.72 E-value=4.5 Score=37.02 Aligned_cols=115 Identities=13% Similarity=0.205 Sum_probs=68.2
Q ss_pred HHHHHHcCccceecccccccccCCCceeecCcc----------hhHHHHHh--cCCCcchhhhhhHhhccCCCCCCcccH
Q psy9039 108 LATAQAAGLDFIRAESFVFGHMADEGLMNAQAG----------PLLRYRKQ--IGADNVLVFTDIKKKHSSHAITADVDI 175 (251)
Q Consensus 108 ~~ia~a~g~~Fir~~~~~~~~~~~~Gli~~da~----------e~~~~r~~--l~~~~i~i~a~v~~k~~~~~~~~~~~i 175 (251)
...|+..|++.++--.|. .+-++.+++. .+.+..++ ++.+..+.+.+...+.|+++.++.-..
T Consensus 50 i~~Ak~aGAdavKfQ~~k-----~~tl~s~~~~~fq~~~~~~~~~ye~~~~~~l~~e~~~~L~~~~~~~Gi~~~stpfD~ 124 (385)
T 1vli_A 50 IDAAAEAGADAVKFQMFQ-----ADRMYQKDPGLYKTAAGKDVSIFSLVQSMEMPAEWILPLLDYCREKQVIFLSTVCDE 124 (385)
T ss_dssp HHHHHHHTCSEEEECCBC-----GGGGTSCCC---------CCCHHHHGGGBSSCGGGHHHHHHHHHHTTCEEECBCCSH
T ss_pred HHHHHHhCCCEEeeeeec-----cCcccCcchhhhccCCCCCccHHHHHHhcCCCHHHHHHHHHHHHHcCCcEEEccCCH
Confidence 555666888888853222 2222222220 12233443 556777888888888888875555544
Q ss_pred HHHHHHhhhccccEEEecCCCCCCCCCHHHHHHHHhcCCCCEEEecCC-ChHhHHHhh
Q psy9039 176 TETAKAASFFLSDGLIITGNATGDPADVSQLMSVKNAVDLPILIGSGV-TSDNVEHYM 232 (251)
Q Consensus 176 ~~~a~~a~~~~~D~v~VTG~~~g~~~~~~~l~~vr~~~~~PV~vG~GI-~~~~v~~~~ 232 (251)
..+ +....+++|.+=|- ++.-.+..+|+++-+ +.+||++-.|. |-+.+..+.
T Consensus 125 ~sv-d~l~~~~vd~~KIg---S~~~~N~pLL~~va~-~gKPViLStGmaTl~Ei~~Av 177 (385)
T 1vli_A 125 GSA-DLLQSTSPSAFKIA---SYEINHLPLLKYVAR-LNRPMIFSTAGAEISDVHEAW 177 (385)
T ss_dssp HHH-HHHHTTCCSCEEEC---GGGTTCHHHHHHHHT-TCSCEEEECTTCCHHHHHHHH
T ss_pred HHH-HHHHhcCCCEEEEC---cccccCHHHHHHHHh-cCCeEEEECCCCCHHHHHHHH
Confidence 333 33344678887442 123446788887755 68999999999 666655443
|
| >3obk_A Delta-aminolevulinic acid dehydratase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, lyase; HET: PBG; 2.50A {Toxoplasma gondii ME49} | Back alignment and structure |
|---|
Probab=83.71 E-value=5.6 Score=35.74 Aligned_cols=31 Identities=19% Similarity=0.331 Sum_probs=23.8
Q ss_pred ccccEEEecCCCCCCCCCHHHHHHHHhcCCCCEEE
Q psy9039 185 FLSDGLIITGNATGDPADVSQLMSVKNAVDLPILI 219 (251)
Q Consensus 185 ~~~D~v~VTG~~~g~~~~~~~l~~vr~~~~~PV~v 219 (251)
-|+|.+.|- .+ -+-++.|+++|+.+++|+.+
T Consensus 259 EGAD~vMVK---Pa-l~YLDIi~~vk~~~~~Pvaa 289 (356)
T 3obk_A 259 EGADMLMVK---PG-LPYLDVLAKIREKSKLPMVA 289 (356)
T ss_dssp TTCSEEEEE---SS-GGGHHHHHHHHHHCSSCEEE
T ss_pred cCCCEEEec---CC-CcHHHHHHHHHhcCCCCEEE
Confidence 499999883 22 22368899999999999985
|
| >2ftp_A Hydroxymethylglutaryl-COA lyase; structural genomics, PSI, protein structure initiativ midwest center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=83.61 E-value=4.6 Score=35.29 Aligned_cols=172 Identities=13% Similarity=0.051 Sum_probs=87.4
Q ss_pred CCCcCCCCccEEEEeec---CCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHHHHHHHHcCccce
Q psy9039 43 PPSVPVGVQHGVIVENM---HDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQAAGLDFI 119 (251)
Q Consensus 43 ~~l~~~Gv~D~i~ieN~---~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g~~Fi 119 (251)
+.|.+.|+ |.|++-.+ -.+||.. + ...+++.+++..+ +|+.+.+ .| ...+..|...|.+.+
T Consensus 37 ~~L~~~Gv-~~IE~g~~~~~~~~~~~~----d------~~~~~~~~~~~~~--~~~~~l~-~~--~~~i~~a~~aG~~~v 100 (302)
T 2ftp_A 37 DDLSAAGL-DYIEVGSFVSPKWVPQMA----G------SAEVFAGIRQRPG--VTYAALA-PN--LKGFEAALESGVKEV 100 (302)
T ss_dssp HHHHHTTC-SEEEEEECSCTTTCGGGT----T------HHHHHHHSCCCTT--SEEEEEC-CS--HHHHHHHHHTTCCEE
T ss_pred HHHHHcCc-CEEEECCCcCcccccccc----C------HHHHHHHhhhcCC--CEEEEEe-CC--HHHHHHHHhCCcCEE
Confidence 66788999 99987421 1123321 1 1223445544333 5777665 34 445566666777766
Q ss_pred ecccccccc---------cCCCceeecCcchhHHHHHhcCCCcchh-hhhh-HhhccCCCCCCcccHHHHHHHhhhcccc
Q psy9039 120 RAESFVFGH---------MADEGLMNAQAGPLLRYRKQIGADNVLV-FTDI-KKKHSSHAITADVDITETAKAASFFLSD 188 (251)
Q Consensus 120 r~~~~~~~~---------~~~~Gli~~da~e~~~~r~~l~~~~i~i-~a~v-~~k~~~~~~~~~~~i~~~a~~a~~~~~D 188 (251)
+.. .... .+.+ -......+..++.++.|. .+.. +..+ ....... ++.+...+.++.+...|+|
T Consensus 101 ~i~--~~~s~~~~~~~~~~s~e-e~l~~~~~~v~~a~~~G~-~V~~~l~~~~~~e~~~~--~~~~~~~~~~~~~~~~G~d 174 (302)
T 2ftp_A 101 AVF--AAASEAFSQRNINCSIK-DSLERFVPVLEAARQHQV-RVRGYISCVLGCPYDGD--VDPRQVAWVARELQQMGCY 174 (302)
T ss_dssp EEE--EESCHHHHHHHHSSCHH-HHHHHHHHHHHHHHHTTC-EEEEEEECTTCBTTTBC--CCHHHHHHHHHHHHHTTCS
T ss_pred EEE--EecCHHHHHHHhCCCHH-HHHHHHHHHHHHHHHCCC-eEEEEEEEEeeCCcCCC--CCHHHHHHHHHHHHHcCCC
Confidence 641 1100 0000 000114566777777775 2320 0000 0000001 2334445555555567999
Q ss_pred EEEecCCCCCCC-C-C-HHHHHHHHhcC-CCCEEE----ecCCChHhHHHhhc--CCEE
Q psy9039 189 GLIITGNATGDP-A-D-VSQLMSVKNAV-DLPILI----GSGVTSDNVEHYMT--ADAL 237 (251)
Q Consensus 189 ~v~VTG~~~g~~-~-~-~~~l~~vr~~~-~~PV~v----G~GI~~~~v~~~~~--ADGv 237 (251)
.+.+.-+ .|.. | . .++++++|+.+ ++|+-+ .+|+...|....+. ++-+
T Consensus 175 ~i~l~DT-~G~~~P~~~~~lv~~l~~~~~~~~l~~H~Hn~~Gla~An~laAv~aGa~~v 232 (302)
T 2ftp_A 175 EVSLGDT-IGVGTAGATRRLIEAVASEVPRERLAGHFHDTYGQALANIYASLLEGIAVF 232 (302)
T ss_dssp EEEEEES-SSCCCHHHHHHHHHHHTTTSCGGGEEEEEBCTTSCHHHHHHHHHHTTCCEE
T ss_pred EEEEeCC-CCCcCHHHHHHHHHHHHHhCCCCeEEEEeCCCccHHHHHHHHHHHhCCCEE
Confidence 9887622 2332 2 2 36788888888 588876 46776677665554 6544
|
| >1geq_A Tryptophan synthase alpha-subunit; hyperthermophIle, pyrococ furiosus, X-RAY analysis, stability, calorimetry, lyase; 2.00A {Pyrococcus furiosus} SCOP: c.1.2.4 PDB: 1wdw_A* 2dzu_A 2dzp_A 2e09_A 2dzw_A 2dzs_A 2dzv_A 2dzt_A 2dzx_A | Back alignment and structure |
|---|
Probab=83.53 E-value=0.9 Score=38.16 Aligned_cols=39 Identities=8% Similarity=0.134 Sum_probs=32.4
Q ss_pred HHHHHHHHhcCCCCEEEecCCCh-------HhHHHhhc--CCEEEEec
Q psy9039 203 VSQLMSVKNAVDLPILIGSGVTS-------DNVEHYMT--ADALIIGS 241 (251)
Q Consensus 203 ~~~l~~vr~~~~~PV~vG~GI~~-------~~v~~~~~--ADGvIVGS 241 (251)
.+.++++|+.+++||.++.++++ +.++.++. ||++++++
T Consensus 69 ~~~i~~i~~~~~~pv~~~~~~~~~~~~~~~~~~~~~~~~Gad~v~~~~ 116 (248)
T 1geq_A 69 FWIVKEFRRHSSTPIVLMTYYNPIYRAGVRNFLAEAKASGVDGILVVD 116 (248)
T ss_dssp HHHHHHHHTTCCCCEEEEECHHHHHHHCHHHHHHHHHHHTCCEEEETT
T ss_pred HHHHHHHHhhCCCCEEEEeccchhhhcCHHHHHHHHHHCCCCEEEECC
Confidence 57788999999999999888776 55777765 99999996
|
| >1xrs_B D-lysine 5,6-aminomutase beta subunit; TIM barrel, rossmann domain, PLP, cobalamin, 5'-deoxyad radical, adenosylcobalamin; HET: B12 PLP 5AD; 2.80A {Clostridium sticklandii} SCOP: c.23.6.1 d.230.4.1 | Back alignment and structure |
|---|
Probab=83.25 E-value=1.7 Score=37.74 Aligned_cols=68 Identities=15% Similarity=0.126 Sum_probs=46.3
Q ss_pred CCcccHHHHHHHhhhccccEEEecCCCCCC---CCCH-HHHHHHHhcC---CCCEEEecCC-ChHhHHHhhcCCEEE
Q psy9039 170 TADVDITETAKAASFFLSDGLIITGNATGD---PADV-SQLMSVKNAV---DLPILIGSGV-TSDNVEHYMTADALI 238 (251)
Q Consensus 170 ~~~~~i~~~a~~a~~~~~D~v~VTG~~~g~---~~~~-~~l~~vr~~~---~~PV~vG~GI-~~~~v~~~~~ADGvI 238 (251)
..+.+.+++.+.+....+|++++|...+.. ...+ +.++++|+.. ++||++||.. +++-+. .+.+|+..
T Consensus 164 G~~vp~e~iv~aa~e~~~d~VglS~l~t~~~~~~~~~~~~i~~L~~~g~~~~i~vivGG~~~~~~~a~-~iGad~~~ 239 (262)
T 1xrs_B 164 GSQVANEDFIKKAVELEADVLLVSQTVTQKNVHIQNMTHLIELLEAEGLRDRFVLLCGGPRINNEIAK-ELGYDAGF 239 (262)
T ss_dssp CSSBCHHHHHHHHHHTTCSEEEEECCCCTTSHHHHHHHHHHHHHHHTTCGGGSEEEEECTTCCHHHHH-TTTCSEEE
T ss_pred CCCCCHHHHHHHHHHcCCCEEEEEeecCCccchHHHHHHHHHHHHhcCCCCCCEEEEECCcCCHHHHH-HcCCeEEE
Confidence 445788888888888899999999987642 2222 4566777653 3899999988 544433 33377653
|
| >3ndo_A Deoxyribose-phosphate aldolase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; HET: GOL; 1.25A {Mycobacterium smegmatis} PDB: 3ng3_A | Back alignment and structure |
|---|
Probab=83.10 E-value=2.4 Score=36.07 Aligned_cols=55 Identities=22% Similarity=0.239 Sum_probs=38.9
Q ss_pred HHhhhccccEEEe-cCCC-CCCCCCHHHHHHHHhcC--CCCEEEecCC-ChHhHHHhhc--CC
Q psy9039 180 KAASFFLSDGLII-TGNA-TGDPADVSQLMSVKNAV--DLPILIGSGV-TSDNVEHYMT--AD 235 (251)
Q Consensus 180 ~~a~~~~~D~v~V-TG~~-~g~~~~~~~l~~vr~~~--~~PV~vG~GI-~~~~v~~~~~--AD 235 (251)
+.+...|+|.+=+ ||.. ++ ..+.+.++.+|+.+ ++||-+.||| |.+++.+++. |+
T Consensus 153 ~ia~~aGADfVKTSTGf~~~~-gAt~edv~lm~~~v~~~v~VKaaGGIrt~~~a~~~i~aGa~ 214 (231)
T 3ndo_A 153 RVARDAGADFVKTSTGFHPSG-GASVQAVEIMARTVGERLGVKASGGIRTAEQAAAMLDAGAT 214 (231)
T ss_dssp HHHHHTTCSEEECCCSCCTTC-SCCHHHHHHHHHHHTTTSEEEEESSCCSHHHHHHHHHTTCS
T ss_pred HHHHHHCcCEEEcCCCCCCCC-CCCHHHHHHHHHHhCCCceEEEeCCCCCHHHHHHHHHhcch
Confidence 3344579999844 5654 33 33466666666654 6999999999 6899999986 77
|
| >2xij_A Methylmalonyl-COA mutase, mitochondrial; isomerase, organic aciduria, vitamin B12; HET: B12 5AD BTB; 1.95A {Homo sapiens} PDB: 2xiq_A* 3bic_A | Back alignment and structure |
|---|
Probab=82.82 E-value=1.5 Score=43.73 Aligned_cols=69 Identities=13% Similarity=0.085 Sum_probs=47.3
Q ss_pred CcccHHHHHHHhhhccccEEEecCCCCCCCCCH-HHHHHHHhcC--CCCEEEecCCChHhHHHhhc--CCEEEE
Q psy9039 171 ADVDITETAKAASFFLSDGLIITGNATGDPADV-SQLMSVKNAV--DLPILIGSGVTSDNVEHYMT--ADALII 239 (251)
Q Consensus 171 ~~~~i~~~a~~a~~~~~D~v~VTG~~~g~~~~~-~~l~~vr~~~--~~PV~vG~GI~~~~v~~~~~--ADGvIV 239 (251)
.+.+.+++++.+....+|.+++|+..+...... +.++.+|+.- ++||++||-+-.++...+.. +|+++-
T Consensus 640 ~~v~~eeiv~aA~e~~adiVglSsl~~~~~~~~~~vi~~Lr~~G~~dv~VivGG~~P~~d~~~l~~~GaD~~f~ 713 (762)
T 2xij_A 640 LFQTPREVAQQAVDADVHAVGVSTLAAGHKTLVPELIKELNSLGRPDILVMCGGVIPPQDYEFLFEVGVSNVFG 713 (762)
T ss_dssp TTCCHHHHHHHHHHTTCSEEEEEECSSCHHHHHHHHHHHHHHTTCTTSEEEEEESCCGGGHHHHHHHTCCEEEC
T ss_pred CCCCHHHHHHHHHHcCCCEEEEeeecHHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCcccHHHHHhCCCCEEeC
Confidence 446788888888888999999998866443333 5566777764 68888887553333333333 998875
|
| >2nli_A Lactate oxidase; flavoenzyme, FMN, D-lactate, oxidoreducta; HET: FMN; 1.59A {Aerococcus viridans} PDB: 2zfa_A* 2du2_A* 2e77_A* 2j6x_A* | Back alignment and structure |
|---|
Probab=82.63 E-value=3 Score=37.75 Aligned_cols=40 Identities=8% Similarity=0.257 Sum_probs=33.8
Q ss_pred CHHHHHHHHhcCCCCEEEecCCChHhHHHhhc--CCEEEEec
Q psy9039 202 DVSQLMSVKNAVDLPILIGSGVTSDNVEHYMT--ADALIIGS 241 (251)
Q Consensus 202 ~~~~l~~vr~~~~~PV~vG~GI~~~~v~~~~~--ADGvIVGS 241 (251)
.++.++.+|+.+++||++-+-.+++.+..+.+ +|+++|..
T Consensus 217 ~~~~i~~lr~~~~~PvivK~v~~~e~a~~a~~~Gad~I~vs~ 258 (368)
T 2nli_A 217 SPRDIEEIAGHSGLPVFVKGIQHPEDADMAIKRGASGIWVSN 258 (368)
T ss_dssp CHHHHHHHHHHSSSCEEEEEECSHHHHHHHHHTTCSEEEECC
T ss_pred hHHHHHHHHHHcCCCEEEEcCCCHHHHHHHHHcCCCEEEEcC
Confidence 46789999999999999985558888888875 99999954
|
| >3kp1_A D-ornithine aminomutase E component; 5 aminomutase (OAM), metal binding protein; HET: PLP B12 5AD; 2.01A {Clostridium sticklandii} PDB: 3kow_A* 3koy_A* 3koz_A* 3kp0_A* 3kox_A* | Back alignment and structure |
|---|
Probab=82.52 E-value=1.6 Score=42.68 Aligned_cols=70 Identities=14% Similarity=0.074 Sum_probs=48.5
Q ss_pred CCCcccHHHHHHHhhhccccEEEecCCCCCC---CCCH-HHHHHHHhcC---CCCEEEecCCChHhHHHhhcCCEEE
Q psy9039 169 ITADVDITETAKAASFFLSDGLIITGNATGD---PADV-SQLMSVKNAV---DLPILIGSGVTSDNVEHYMTADALI 238 (251)
Q Consensus 169 ~~~~~~i~~~a~~a~~~~~D~v~VTG~~~g~---~~~~-~~l~~vr~~~---~~PV~vG~GI~~~~v~~~~~ADGvI 238 (251)
...+.+.+++++.+....+|.+++|+.-+.. -..+ +.++.+|+.- ++||++||.+-.+..++.+.||+..
T Consensus 640 LGvdVPpEeIVeAA~EedADVVGLSsLLTt~dihL~~MkevIelLrE~GlrDkIkVIVGGa~~tqd~AkeIGADa~f 716 (763)
T 3kp1_A 640 LGTSVPVEKLVDAAIELKADAILASTIISHDDIHYKNMKRIHELAVEKGIRDKIMIGCGGTQVTPEVAVKQGVDAGF 716 (763)
T ss_dssp CCSSBCHHHHHHHHHHTTCSEEEEECCCCGGGHHHHHHHHHHHHHHHTTCTTTSEEEEECTTCCHHHHHTTTCSEEE
T ss_pred CCCCCCHHHHHHHHHHcCCCEEEEeccccCchhhHHHHHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHcCCcEEE
Confidence 3556888999988888899999999876652 1223 4566777663 3899999988434444444487753
|
| >2pgw_A Muconate cycloisomerase; enolase superfamily, octamer, small metabolism, PSI-II, NYSGXRC, structural genomics, PR structure initiative; 1.95A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=81.89 E-value=3.4 Score=37.18 Aligned_cols=60 Identities=17% Similarity=0.210 Sum_probs=44.0
Q ss_pred HHHHHhhhccccEEEecCCCCCCCCCHHHHHHHHhcCCCCEEEecCC-ChHhHHHhhc---CCEEEEe
Q psy9039 177 ETAKAASFFLSDGLIITGNATGDPADVSQLMSVKNAVDLPILIGSGV-TSDNVEHYMT---ADALIIG 240 (251)
Q Consensus 177 ~~a~~a~~~~~D~v~VTG~~~g~~~~~~~l~~vr~~~~~PV~vG~GI-~~~~v~~~~~---ADGvIVG 240 (251)
+.++..+.++++.+- - .-.+.+.+.++++|+.+++||+.+..+ +++.+.++++ +|.+.+.
T Consensus 208 ~~~~~l~~~~i~~iE--q--P~~~~~~~~~~~l~~~~~iPI~~de~i~~~~~~~~~i~~~~~d~v~ik 271 (384)
T 2pgw_A 208 NMCRKLEKYDIEFIE--Q--PTVSWSIPAMAHVREKVGIPIVADQAAFTLYDVYEICRQRAADMICIG 271 (384)
T ss_dssp HHHHHHGGGCCSEEE--C--CSCTTCHHHHHHHHHHCSSCEEESTTCCSHHHHHHHHHTTCCSEEEEC
T ss_pred HHHHHHHhcCCCEEe--C--CCChhhHHHHHHHHhhCCCCEEEeCCcCCHHHHHHHHHcCCCCEEEEc
Confidence 344444457888753 1 112236788999999999999999999 6899999883 9999874
|
| >3ngj_A Deoxyribose-phosphate aldolase; lyase, structural genomics, structural genomics center for infectious disease, ssgcid; 1.70A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=81.61 E-value=3.2 Score=35.49 Aligned_cols=89 Identities=16% Similarity=0.110 Sum_probs=52.6
Q ss_pred cchhHHHHHhcCCCcchhhhhhHhhccCCCCCCcccHHHHHHHhhhccccEEEe-cCCCCCCCCCHHHHHHHHhcC--CC
Q psy9039 139 AGPLLRYRKQIGADNVLVFTDIKKKHSSHAITADVDITETAKAASFFLSDGLII-TGNATGDPADVSQLMSVKNAV--DL 215 (251)
Q Consensus 139 a~e~~~~r~~l~~~~i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~~~~~D~v~V-TG~~~g~~~~~~~l~~vr~~~--~~ 215 (251)
..++...++..+...+|++- +.+ . .+++.+....+.+...|+|.+=+ ||..++. .+.+.++.+|+.+ ++
T Consensus 130 ~~eI~~v~~a~~~~~lKVIl----Et~--~-Lt~eei~~a~~ia~~aGADfVKTSTGf~~gg-At~~dv~lmr~~vg~~v 201 (239)
T 3ngj_A 130 EKDVKAVVDASGKALTKVII----ECC--Y-LTNEEKVEVCKRCVAAGAEYVKTSTGFGTHG-ATPEDVKLMKDTVGDKA 201 (239)
T ss_dssp HHHHHHHHHHHTTSEEEEEC----CGG--G-SCHHHHHHHHHHHHHHTCSEEECCCSSSSCC-CCHHHHHHHHHHHGGGS
T ss_pred HHHHHHHHHHhcCCceEEEE----ecC--C-CCHHHHHHHHHHHHHHCcCEEECCCCCCCCC-CCHHHHHHHHHhhCCCc
Confidence 34455555555433455542 111 1 12223333334444579999866 4765443 3456666666554 69
Q ss_pred CEEEecCC-ChHhHHHhhc--CC
Q psy9039 216 PILIGSGV-TSDNVEHYMT--AD 235 (251)
Q Consensus 216 PV~vG~GI-~~~~v~~~~~--AD 235 (251)
||-+.||| |.+++.+++. |+
T Consensus 202 ~VKasGGIrt~~da~~~i~aGA~ 224 (239)
T 3ngj_A 202 LVKAAGGIRTFDDAMKMINNGAS 224 (239)
T ss_dssp EEEEESSCCSHHHHHHHHHTTEE
T ss_pred eEEEeCCCCCHHHHHHHHHhccc
Confidence 99999999 6899999886 65
|
| >1ub3_A Aldolase protein; schiff base, deoxyribose phosphate, carbinolamine, structural genomics, riken structural genomics/proteomics initiative; HET: HPD; 1.40A {Thermus thermophilus} SCOP: c.1.10.1 PDB: 1j2w_A* | Back alignment and structure |
|---|
Probab=81.20 E-value=4.3 Score=34.12 Aligned_cols=124 Identities=16% Similarity=0.093 Sum_probs=66.3
Q ss_pred HHHHHHcCccceecccccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHhhccCCCCCCcccHHHHHHHhhhccc
Q psy9039 108 LATAQAAGLDFIRAESFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSSHAITADVDITETAKAASFFLS 187 (251)
Q Consensus 108 ~~ia~a~g~~Fir~~~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~~~~~ 187 (251)
..-|...|++-+-.-...|.. -+|-+..-..++.+.++..+...++++-.. +. + + ++-+...++.+...|+
T Consensus 77 ~~~Ai~~GAdevd~vinig~~--~~g~~~~v~~ei~~v~~a~~~~~lkvIlet----~~-l-~-~e~i~~a~~ia~eaGA 147 (220)
T 1ub3_A 77 AALACARGADEVDMVLHLGRA--KAGDLDYLEAEVRAVREAVPQAVLKVILET----GY-F-S-PEEIARLAEAAIRGGA 147 (220)
T ss_dssp HHHHHHTTCSEEEEECCHHHH--HTTCHHHHHHHHHHHHHHSTTSEEEEECCG----GG-S-C-HHHHHHHHHHHHHHTC
T ss_pred HHHHHHcCCCEEEecccchhh--hCCCHHHHHHHHHHHHHHHcCCCceEEEec----CC-C-C-HHHHHHHHHHHHHhCC
Confidence 444555677665542222211 011121124455566666654456644211 11 1 1 2223333344445799
Q ss_pred cEEEe-cCCCCCCCCCHHHHHHHHh--cCCCCEEEecCC-ChHhHHHhhc--CC--EEEEec
Q psy9039 188 DGLII-TGNATGDPADVSQLMSVKN--AVDLPILIGSGV-TSDNVEHYMT--AD--ALIIGS 241 (251)
Q Consensus 188 D~v~V-TG~~~g~~~~~~~l~~vr~--~~~~PV~vG~GI-~~~~v~~~~~--AD--GvIVGS 241 (251)
|.+=+ ||..++. .+.+.++.+++ ..++||-+.||| |.+++.+++. |+ |+-.|-
T Consensus 148 DfVKTsTGf~~~g-at~~dv~~m~~~vg~~v~VkaaGGirt~~~al~~i~aGa~RiG~S~g~ 208 (220)
T 1ub3_A 148 DFLKTSTGFGPRG-ASLEDVALLVRVAQGRAQVKAAGGIRDRETALRMLKAGASRLGTSSGV 208 (220)
T ss_dssp SEEECCCSSSSCC-CCHHHHHHHHHHHTTSSEEEEESSCCSHHHHHHHHHTTCSEEEETTHH
T ss_pred CEEEeCCCCCCCC-CCHHHHHHHHHhhCCCCeEEEECCCCCHHHHHHHHHCCCcccchhHHH
Confidence 99854 4665443 34555555555 357999999999 6888888886 88 554433
|
| >3qze_A DHDPS, dihydrodipicolinate synthase; alpha beta barrel, cytoplasmic; 1.59A {Pseudomonas aeruginosa} PDB: 3puo_A* 3noe_A 3ps7_A* 3s8h_A | Back alignment and structure |
|---|
Probab=80.90 E-value=8 Score=34.04 Aligned_cols=170 Identities=12% Similarity=0.117 Sum_probs=75.6
Q ss_pred CCCcCCCCccEEEEe-ecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHHHHHH---HHcCccc
Q psy9039 43 PPSVPVGVQHGVIVE-NMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATA---QAAGLDF 118 (251)
Q Consensus 43 ~~l~~~Gv~D~i~ie-N~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia---~a~g~~F 118 (251)
+-|++.|+ |||.+- .-+-.|.- .-.+..+-+..+++.++. .+|+.+.+-.|....+...+ ...|++.
T Consensus 51 ~~li~~Gv-~Gl~v~GtTGE~~~L----s~~Er~~v~~~~v~~~~g----rvpViaGvg~~st~eai~la~~A~~~Gada 121 (314)
T 3qze_A 51 DFHLQEGT-NAIVAVGTTGESATL----DVEEHIQVIRRVVDQVKG----RIPVIAGTGANSTREAVALTEAAKSGGADA 121 (314)
T ss_dssp HHHHHHTC-CEEEESSGGGTGGGC----CHHHHHHHHHHHHHHHTT----SSCEEEECCCSSHHHHHHHHHHHHHTTCSE
T ss_pred HHHHHcCC-CEEEECccccChhhC----CHHHHHHHHHHHHHHhCC----CCcEEEeCCCcCHHHHHHHHHHHHHcCCCE
Confidence 45678999 999862 11111111 122333333333333332 26888887777644444432 2344443
Q ss_pred eecccccccccCCCceeecCcchhHHHHHhcCC-Ccchh-hhhhHhhccCCCCCCcccHHHHHHHhhhccccEEEecCCC
Q psy9039 119 IRAESFVFGHMADEGLMNAQAGPLLRYRKQIGA-DNVLV-FTDIKKKHSSHAITADVDITETAKAASFFLSDGLIITGNA 196 (251)
Q Consensus 119 ir~~~~~~~~~~~~Gli~~da~e~~~~r~~l~~-~~i~i-~a~v~~k~~~~~~~~~~~i~~~a~~a~~~~~D~v~VTG~~ 196 (251)
+-.- ..-...+..+++.++.+.+-. -++.+ ++++-...+.. .+.+.+.+.++.-.+- |-+
T Consensus 122 vlv~--------~P~y~~~s~~~l~~~f~~va~a~~lPiilYn~P~~tg~~-----l~~~~~~~La~~pnIv-----giK 183 (314)
T 3qze_A 122 CLLV--------TPYYNKPTQEGMYQHFRHIAEAVAIPQILYNVPGRTSCD-----MLPETVERLSKVPNII-----GIK 183 (314)
T ss_dssp EEEE--------CCCSSCCCHHHHHHHHHHHHHHSCSCEEEEECHHHHSCC-----CCHHHHHHHHTSTTEE-----EEE
T ss_pred EEEc--------CCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCC-----CCHHHHHHHhcCCCEE-----EEE
Confidence 3220 111112234455555444311 12222 33332233433 2334444444321221 222
Q ss_pred CCCCCCHHHHHHHHhcC--CCCEEEecCCChHhHHHhhc-CCEEEEece
Q psy9039 197 TGDPADVSQLMSVKNAV--DLPILIGSGVTSDNVEHYMT-ADALIIGSH 242 (251)
Q Consensus 197 ~g~~~~~~~l~~vr~~~--~~PV~vG~GI~~~~v~~~~~-ADGvIVGS~ 242 (251)
. ...+...+.++++.. +.-|+.|. ..--...+.. ++|+|-+++
T Consensus 184 d-ssgd~~~~~~~~~~~~~~f~v~~G~--d~~~l~~l~~Ga~G~is~~a 229 (314)
T 3qze_A 184 E-ATGDLQRAKEVIERVGKDFLVYSGD--DATAVELMLLGGKGNISVTA 229 (314)
T ss_dssp E-CSCCHHHHHHHHHHSCTTSEEEESC--GGGHHHHHHTTCCEEEESGG
T ss_pred c-CCCCHHHHHHHHHHcCCCeEEEecC--hHHHHHHHHCCCCEEEecHH
Confidence 1 122566677766655 35555444 2222334444 999998865
|
| >1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A* | Back alignment and structure |
|---|
Probab=80.85 E-value=1.9 Score=40.65 Aligned_cols=62 Identities=19% Similarity=0.143 Sum_probs=45.3
Q ss_pred HHHhhhccccEEEecCCCCCCCC-CHHHHHHHHhcC-C-CCEEEecCCChHhHHHhhc--CCEEEEec
Q psy9039 179 AKAASFFLSDGLIITGNATGDPA-DVSQLMSVKNAV-D-LPILIGSGVTSDNVEHYMT--ADALIIGS 241 (251)
Q Consensus 179 a~~a~~~~~D~v~VTG~~~g~~~-~~~~l~~vr~~~-~-~PV~vG~GI~~~~v~~~~~--ADGvIVGS 241 (251)
++.....+++.+.+.-.+ +... ..+.++.+|+.. + +||++|...+.+.+..+.+ ||+++||.
T Consensus 247 ~~~l~e~gv~~l~Vd~~~-g~~~~~~~~i~~lk~~~~~~~~Vi~G~V~t~~~a~~l~~aGad~I~Vg~ 313 (503)
T 1me8_A 247 VPALVEAGADVLCIDSSD-GFSEWQKITIGWIREKYGDKVKVGAGNIVDGEGFRYLADAGADFIKIGI 313 (503)
T ss_dssp HHHHHHHTCSEEEECCSC-CCSHHHHHHHHHHHHHHGGGSCEEEEEECSHHHHHHHHHHTCSEEEECS
T ss_pred HHHHHhhhccceEEeccc-CcccchhhHHHHHHHhCCCCceEeeccccCHHHHHHHHHhCCCeEEecc
Confidence 444444589998885443 2222 246788888876 5 8999988889999998886 99999974
|
| >1kbi_A Cytochrome B2, L-LCR; flavocytochrome B2, electron transfer, oxidoreductase; HET: HEM FMN; 2.30A {Saccharomyces cerevisiae} SCOP: c.1.4.1 d.120.1.1 PDB: 1fcb_A* 1lco_A* 1ldc_A* 1sze_A* 2oz0_A* 1szf_A* 1szg_A* 1ltd_A* 1kbj_A* 1qcw_A* 3ks0_A* | Back alignment and structure |
|---|
Probab=80.83 E-value=3.8 Score=38.77 Aligned_cols=39 Identities=15% Similarity=0.308 Sum_probs=32.4
Q ss_pred HHHHHHHHhcCCCCEEEecCCChHhHHHhhc--CCEEEEec
Q psy9039 203 VSQLMSVKNAVDLPILIGSGVTSDNVEHYMT--ADALIIGS 241 (251)
Q Consensus 203 ~~~l~~vr~~~~~PV~vG~GI~~~~v~~~~~--ADGvIVGS 241 (251)
++.++++|+.+++||++-+..+.+.+..+.+ +|+++|+.
T Consensus 332 ~~~i~~lr~~~~~PvivKgv~~~e~A~~a~~aGad~I~vs~ 372 (511)
T 1kbi_A 332 WKDIEELKKKTKLPIVIKGVQRTEDVIKAAEIGVSGVVLSN 372 (511)
T ss_dssp HHHHHHHHHHCSSCEEEEEECSHHHHHHHHHTTCSEEEECC
T ss_pred HHHHHHHHHHhCCcEEEEeCCCHHHHHHHHHcCCCEEEEcC
Confidence 6779999999999999985447888877775 99999954
|
| >1mdl_A Mandelate racemase; isomerase, mandelate pathway, magnesium; HET: RMN SMN; 1.85A {Pseudomonas aeruginosa} SCOP: c.1.11.2 d.54.1.1 PDB: 1mdr_A* 3uxk_A* 3uxl_A* 1dtn_A* 1mra_A* 2mnr_A 1mns_A | Back alignment and structure |
|---|
Probab=80.71 E-value=2.3 Score=37.91 Aligned_cols=91 Identities=9% Similarity=0.096 Sum_probs=56.9
Q ss_pred cchhHHHHHhcCCCcchhhhhhHhhccCCCCCCcccHHHHHHHhhhccccEEEecCCCCCCCCCHHHHHHHHhcCCCCEE
Q psy9039 139 AGPLLRYRKQIGADNVLVFTDIKKKHSSHAITADVDITETAKAASFFLSDGLIITGNATGDPADVSQLMSVKNAVDLPIL 218 (251)
Q Consensus 139 a~e~~~~r~~l~~~~i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~~~~~D~v~VTG~~~g~~~~~~~l~~vr~~~~~PV~ 218 (251)
.+-+...|+.+|. ++.+.-|.+ .+ + +.....+.++..+.++++.+- ..-.+.+.+.++++|+.+++||+
T Consensus 176 ~e~v~avr~a~g~-~~~l~vDan--~~--~--~~~~a~~~~~~l~~~~i~~iE----~P~~~~~~~~~~~l~~~~~iPI~ 244 (359)
T 1mdl_A 176 LAVVRSIRQAVGD-DFGIMVDYN--QS--L--DVPAAIKRSQALQQEGVTWIE----EPTLQHDYEGHQRIQSKLNVPVQ 244 (359)
T ss_dssp HHHHHHHHHHHCS-SSEEEEECT--TC--S--CHHHHHHHHHHHHHHTCSCEE----CCSCTTCHHHHHHHHHTCSSCEE
T ss_pred HHHHHHHHHHhCC-CCEEEEECC--CC--C--CHHHHHHHHHHHHHhCCCeEE----CCCChhhHHHHHHHHHhCCCCEE
Confidence 3444556777764 566654443 11 1 112223344444446777651 11112357889999999999999
Q ss_pred EecCC-ChHhHHHhhc---CCEEEEe
Q psy9039 219 IGSGV-TSDNVEHYMT---ADALIIG 240 (251)
Q Consensus 219 vG~GI-~~~~v~~~~~---ADGvIVG 240 (251)
.+..+ +++.+.+++. +|.+.+.
T Consensus 245 ~de~~~~~~~~~~~i~~~~~d~v~ik 270 (359)
T 1mdl_A 245 MGENWLGPEEMFKALSIGACRLAMPD 270 (359)
T ss_dssp ECTTCCSHHHHHHHHHTTCCSEECCB
T ss_pred eCCCCCCHHHHHHHHHcCCCCEEeec
Confidence 99999 7899998874 8988764
|
| >3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=80.64 E-value=4.7 Score=35.31 Aligned_cols=58 Identities=24% Similarity=0.398 Sum_probs=37.1
Q ss_pred hccccEEEecCCCCCCCCC--H----HHHHHHHhcC--CCCEEEecCC-Ch-HhHH---Hhhc--CCEEEEece
Q psy9039 184 FFLSDGLIITGNATGDPAD--V----SQLMSVKNAV--DLPILIGSGV-TS-DNVE---HYMT--ADALIIGSH 242 (251)
Q Consensus 184 ~~~~D~v~VTG~~~g~~~~--~----~~l~~vr~~~--~~PV~vG~GI-~~-~~v~---~~~~--ADGvIVGS~ 242 (251)
..|+|++++-|+. |+... . +.++.+++.+ .+||++|-|- +. +.++ .+.+ |||+.+-+-
T Consensus 48 ~~Gv~gl~v~Gtt-GE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~st~~ai~la~~A~~~Gadavlv~~P 120 (304)
T 3cpr_A 48 DKGLDSLVLAGTT-GESPTTTAAEKLELLKAVREEVGDRAKLIAGVGTNNTRTSVELAEAAASAGADGLLVVTP 120 (304)
T ss_dssp HTTCCEEEESSTT-TTTTTSCHHHHHHHHHHHHHHHTTTSEEEEECCCSCHHHHHHHHHHHHHTTCSEEEEECC
T ss_pred HcCCCEEEECccc-cChhhCCHHHHHHHHHHHHHHhCCCCcEEecCCCCCHHHHHHHHHHHHhcCCCEEEECCC
Confidence 3599999998874 44332 2 3345555554 5999999998 54 3333 2222 999988653
|
| >1xky_A Dihydrodipicolinate synthase; TIM barrel, , lysine biosynthesis;spine, lyase; 1.94A {Bacillus anthracis} SCOP: c.1.10.1 PDB: 1xl9_A 3hij_A* | Back alignment and structure |
|---|
Probab=80.51 E-value=4 Score=35.75 Aligned_cols=58 Identities=16% Similarity=0.365 Sum_probs=37.1
Q ss_pred hccccEEEecCCCCCCCC--CH----HHHHHHHhcC--CCCEEEecCC-Ch-HhHH---Hhhc--CCEEEEece
Q psy9039 184 FFLSDGLIITGNATGDPA--DV----SQLMSVKNAV--DLPILIGSGV-TS-DNVE---HYMT--ADALIIGSH 242 (251)
Q Consensus 184 ~~~~D~v~VTG~~~g~~~--~~----~~l~~vr~~~--~~PV~vG~GI-~~-~~v~---~~~~--ADGvIVGS~ 242 (251)
..|+|++++.|+. |+.. +. +.++.+++.+ ++||++|-|- +. +.++ .+.+ |||+.+-+-
T Consensus 44 ~~Gv~gl~v~GtT-GE~~~Ls~eEr~~v~~~~~~~~~grvpViaGvg~~~t~~ai~la~~A~~~Gadavlv~~P 116 (301)
T 1xky_A 44 DNGTTAIVVGGTT-GESPTLTSEEKVALYRHVVSVVDKRVPVIAGTGSNNTHASIDLTKKATEVGVDAVMLVAP 116 (301)
T ss_dssp HTTCCEEEESSTT-TTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSCHHHHHHHHHHHHHTTCSEEEEECC
T ss_pred HcCCCEEEECccc-cChhhCCHHHHHHHHHHHHHHhCCCceEEeCCCCCCHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 3699999998874 4432 22 3345555554 6999999998 54 3333 2222 999988653
|
| >2ovl_A Putative racemase; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.13A {Streptomyces coelicolor A3} PDB: 3ck5_A | Back alignment and structure |
|---|
Probab=80.21 E-value=2.6 Score=37.82 Aligned_cols=91 Identities=12% Similarity=0.047 Sum_probs=57.2
Q ss_pred cchhHHHHHhcCCCcchhhhhhHhhccCCCCCCcccHHHHHHHhhhccccEEEecCCCCCCCCCHHHHHHHHhcCCCCEE
Q psy9039 139 AGPLLRYRKQIGADNVLVFTDIKKKHSSHAITADVDITETAKAASFFLSDGLIITGNATGDPADVSQLMSVKNAVDLPIL 218 (251)
Q Consensus 139 a~e~~~~r~~l~~~~i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~~~~~D~v~VTG~~~g~~~~~~~l~~vr~~~~~PV~ 218 (251)
.+-+...|+.+|. ++.+.-|.+ .+ + +.....+.++..+.++++.+- ..-.+.+.+.++++|+.+++||+
T Consensus 178 ~e~v~avr~a~G~-d~~l~vDan--~~--~--~~~~a~~~~~~l~~~~i~~iE----qP~~~~d~~~~~~l~~~~~iPI~ 246 (371)
T 2ovl_A 178 VDRVSALREHLGD-SFPLMVDAN--MK--W--TVDGAIRAARALAPFDLHWIE----EPTIPDDLVGNARIVRESGHTIA 246 (371)
T ss_dssp HHHHHHHHHHHCT-TSCEEEECT--TC--S--CHHHHHHHHHHHGGGCCSEEE----CCSCTTCHHHHHHHHHHHCSCEE
T ss_pred HHHHHHHHHHhCC-CCeEEEECC--CC--C--CHHHHHHHHHHHHhcCCCEEE----CCCCcccHHHHHHHHhhCCCCEE
Confidence 3445556777764 555554443 11 1 112233344444447788752 11112357889999999999999
Q ss_pred EecCC-ChHhHHHhhc---CCEEEEe
Q psy9039 219 IGSGV-TSDNVEHYMT---ADALIIG 240 (251)
Q Consensus 219 vG~GI-~~~~v~~~~~---ADGvIVG 240 (251)
.+..+ +++++.++++ +|.+.+.
T Consensus 247 ~dE~~~~~~~~~~~i~~~~~d~v~ik 272 (371)
T 2ovl_A 247 GGENLHTLYDFHNAVRAGSLTLPEPD 272 (371)
T ss_dssp ECTTCCSHHHHHHHHHHTCCSEECCC
T ss_pred eCCCCCCHHHHHHHHHcCCCCEEeeC
Confidence 99999 7899998874 8988764
|
| >2nql_A AGR_PAT_674P, isomerase/lactonizing enzyme; enolase, structural genomics, protein structure initiative, nysgxrc; 1.80A {Agrobacterium tumefaciens str} PDB: 4dn1_A | Back alignment and structure |
|---|
Probab=80.13 E-value=2.8 Score=37.88 Aligned_cols=88 Identities=16% Similarity=0.126 Sum_probs=55.5
Q ss_pred hHHHHHhcCCCcchhhhhhHhhccCCCCCCcccHHHHHHHhhhccccEEEecCCCCCCCCCHHHHHHHHhcCCCCEEEec
Q psy9039 142 LLRYRKQIGADNVLVFTDIKKKHSSHAITADVDITETAKAASFFLSDGLIITGNATGDPADVSQLMSVKNAVDLPILIGS 221 (251)
Q Consensus 142 ~~~~r~~l~~~~i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~~~~~D~v~VTG~~~g~~~~~~~l~~vr~~~~~PV~vG~ 221 (251)
+...|+.+|. ++.+.-|.+ .+ + +.....+.++..+.++++.+- ..-.+.+.+.++++|+.+++||+.+.
T Consensus 198 v~avr~a~g~-d~~l~vDan--~~--~--~~~~a~~~~~~l~~~~i~~iE----qP~~~~d~~~~~~l~~~~~iPI~~dE 266 (388)
T 2nql_A 198 IANLRQVLGP-QAKIAADMH--WN--Q--TPERALELIAEMQPFDPWFAE----APVWTEDIAGLEKVSKNTDVPIAVGE 266 (388)
T ss_dssp HHHHHHHHCT-TSEEEEECC--SC--S--CHHHHHHHHHHHGGGCCSCEE----CCSCTTCHHHHHHHHTSCCSCEEECT
T ss_pred HHHHHHHhCC-CCEEEEECC--CC--C--CHHHHHHHHHHHhhcCCCEEE----CCCChhhHHHHHHHHhhCCCCEEEeC
Confidence 4445666764 555554432 11 1 112223344444446777752 11112357889999999999999999
Q ss_pred CC-ChHhHHHhhc---CCEEEEe
Q psy9039 222 GV-TSDNVEHYMT---ADALIIG 240 (251)
Q Consensus 222 GI-~~~~v~~~~~---ADGvIVG 240 (251)
.+ +++++.++++ +|.+.+-
T Consensus 267 ~~~~~~~~~~~i~~~~~d~v~ik 289 (388)
T 2nql_A 267 EWRTHWDMRARIERCRIAIVQPE 289 (388)
T ss_dssp TCCSHHHHHHHHTTSCCSEECCC
T ss_pred CcCCHHHHHHHHHcCCCCEEEec
Confidence 99 6899999884 9998764
|
| >3l21_A DHDPS, dihydrodipicolinate synthase; DAPA, dimer, RV2753C, lysine biosynthesis, amino-acid biosynthesis, diaminopimelate biosynthesis; HET: KPI CME; 2.10A {Mycobacterium tuberculosis} SCOP: c.1.10.1 PDB: 1xxx_A | Back alignment and structure |
|---|
Probab=80.12 E-value=3.8 Score=35.98 Aligned_cols=57 Identities=23% Similarity=0.406 Sum_probs=36.9
Q ss_pred hccccEEEecCCCCCCCC--CH----HHHHHHHhcC--CCCEEEecCC-ChHh-HH---Hhhc--CCEEEEec
Q psy9039 184 FFLSDGLIITGNATGDPA--DV----SQLMSVKNAV--DLPILIGSGV-TSDN-VE---HYMT--ADALIIGS 241 (251)
Q Consensus 184 ~~~~D~v~VTG~~~g~~~--~~----~~l~~vr~~~--~~PV~vG~GI-~~~~-v~---~~~~--ADGvIVGS 241 (251)
..|+|++++.|+. |+.. +. +.++.+++.+ ++||++|-|- +.++ ++ .+.+ |||+.+-+
T Consensus 47 ~~Gv~gi~v~Gtt-GE~~~Lt~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~a~~~Gadavlv~~ 118 (304)
T 3l21_A 47 DQGCDGLVVSGTT-GESPTTTDGEKIELLRAVLEAVGDRARVIAGAGTYDTAHSIRLAKACAAEGAHGLLVVT 118 (304)
T ss_dssp HTTCSEEEESSTT-TTGGGSCHHHHHHHHHHHHHHHTTTSEEEEECCCSCHHHHHHHHHHHHHHTCSEEEEEC
T ss_pred HcCCCEEEeCccc-cchhhCCHHHHHHHHHHHHHHhCCCCeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEECC
Confidence 3699999998874 4432 22 3355555554 6899999986 5433 33 2223 99998875
|
| >2vef_A Dihydropteroate synthase; antibiotic resistance, transferase, folate biosynthesis; 1.8A {Streptococcus pneumoniae} PDB: 2veg_A* | Back alignment and structure |
|---|
Probab=80.05 E-value=1.7 Score=38.65 Aligned_cols=99 Identities=16% Similarity=0.116 Sum_probs=56.0
Q ss_pred HHHHHhhCCCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHHHHHHHHc
Q psy9039 35 CAEIRKVLPPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQAA 114 (251)
Q Consensus 35 ~~~a~~~a~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~ 114 (251)
.+.+++.++.+++.|+ |.|-|-=+--.|.+.++ +..+=.+-+..+++++++.++ +|+.|.++.. ..+..|...
T Consensus 32 ~~~a~~~a~~~v~~GA-dIIDIGgeSTrPGa~~v-~~~eE~~Rv~pvI~~l~~~~~--vpiSIDT~~~---~Va~aAl~a 104 (314)
T 2vef_A 32 LEQALQQARKLIAEGA-SMLDIGGESTRPGSSYV-EIEEEIQRVVPVIKAIRKESD--VLISIDTWKS---QVAEAALAA 104 (314)
T ss_dssp HHHHHHHHHHHHHTTC-SEEEEECCC-----CHH-HHHHHHHHHHHHHHHHHHHCC--CEEEEECSCH---HHHHHHHHT
T ss_pred HHHHHHHHHHHHHCCC-CEEEECCCcCCCCCCCC-CHHHHHHHHHHHHHHHHhhCC--ceEEEeCCCH---HHHHHHHHc
Confidence 3455566677888999 99986222222443332 111222333446788888777 7999999863 334455556
Q ss_pred CccceecccccccccCCCceeecCcchhHHHHHhcCC
Q psy9039 115 GLDFIRAESFVFGHMADEGLMNAQAGPLLRYRKQIGA 151 (251)
Q Consensus 115 g~~Fir~~~~~~~~~~~~Gli~~da~e~~~~r~~l~~ 151 (251)
|++.+-. ..|.- .| .+..+..+++++
T Consensus 105 Ga~iIND---------Vsg~~-~d-~~m~~v~a~~~~ 130 (314)
T 2vef_A 105 GADLVND---------ITGLM-GD-EKMPHVVAEARA 130 (314)
T ss_dssp TCCEEEE---------TTTTC-SC-TTHHHHHHHHTC
T ss_pred CCCEEEE---------CCCCC-CC-hHHHHHHHHcCC
Confidence 8888764 11111 11 356667777776
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 251 | |||
| d1qopa_ | 267 | Trp synthase alpha-subunit {Salmonella typhimurium | 100.0 | |
| d1geqa_ | 248 | Trp synthase alpha-subunit {Archaeon Pyrococcus fu | 100.0 | |
| d1ujpa_ | 271 | Trp synthase alpha-subunit {Thermus thermophilus [ | 100.0 | |
| d1rd5a_ | 261 | Trp synthase alpha-subunit {Maize (Zea mays) [TaxI | 100.0 | |
| d2f6ua1 | 231 | (S)-3-O-geranylgeranylglyceryl phosphate synthase | 99.86 | |
| d1viza_ | 229 | PcrB protein homolog YerE {Bacillus subtilis [TaxI | 99.81 | |
| d1y0ea_ | 222 | Putative N-acetylmannosamine-6-phosphate 2-epimera | 98.91 | |
| d1yxya1 | 230 | Putative N-acetylmannosamine-6-phosphate 2-epimera | 98.72 | |
| d1xi3a_ | 206 | Thiamin phosphate synthase {Archaeon (Pyrococcus f | 98.62 | |
| d1h5ya_ | 252 | Cyclase subunit (or domain) of imidazoleglycerolph | 98.22 | |
| d2tpsa_ | 226 | Thiamin phosphate synthase {Bacillus subtilis [Tax | 98.18 | |
| d1thfd_ | 253 | Cyclase subunit (or domain) of imidazoleglycerolph | 98.09 | |
| d1wa3a1 | 202 | KDPG aldolase {Thermotoga maritima [TaxId: 2336]} | 98.08 | |
| d1wbha1 | 213 | KDPG aldolase {Escherichia coli [TaxId: 562]} | 98.07 | |
| d1vhca_ | 212 | Hypothetical protein HI0047 {Haemophilus influenza | 98.05 | |
| d1ep3a_ | 311 | Dihydroorotate dehydrogenase {Lactococcus lactis, | 98.04 | |
| d1vzwa1 | 239 | Phosphoribosylformimino-5-aminoimidazole carboxami | 98.02 | |
| d1gtea2 | 312 | Dihydropyrimidine dehydrogenase, domain 4 {Pig (Su | 98.0 | |
| d1a53a_ | 247 | Indole-3-glycerophosphate synthase, IPGS {Archaeon | 97.86 | |
| d1h1ya_ | 220 | D-ribulose-5-phosphate 3-epimerase {Rice (Oryza sa | 97.83 | |
| d1ka9f_ | 251 | Cyclase subunit (or domain) of imidazoleglycerolph | 97.75 | |
| d1mxsa_ | 216 | KDPG aldolase {Pseudomonas putida [TaxId: 303]} | 97.65 | |
| d1f76a_ | 336 | Dihydroorotate dehydrogenase {Escherichia coli [Ta | 97.58 | |
| d1vrda1 | 330 | Inosine monophosphate dehydrogenase (IMPDH) {Therm | 97.55 | |
| d1q6oa_ | 213 | 3-keto-L-gulonate 6-phosphate decarboxylase {Esche | 97.5 | |
| d1tqxa_ | 221 | D-ribulose-5-phosphate 3-epimerase {Plasmodium fal | 97.48 | |
| d2flia1 | 217 | D-ribulose-5-phosphate 3-epimerase {Streptococcus | 97.47 | |
| d1vc4a_ | 254 | Indole-3-glycerophosphate synthase, IPGS {Thermus | 97.45 | |
| d1rpxa_ | 230 | D-ribulose-5-phosphate 3-epimerase {Potato (Solanu | 97.41 | |
| d1wv2a_ | 243 | Thiazole biosynthesis protein ThiG {Pseudomonas ae | 97.37 | |
| d1qo2a_ | 241 | Phosphoribosylformimino-5-aminoimidazole carboxami | 97.31 | |
| d1xm3a_ | 251 | Thiazole biosynthesis protein ThiG {Bacillus subti | 97.31 | |
| d1djqa1 | 340 | Trimethylamine dehydrogenase, N-terminal domain {M | 97.3 | |
| d1z41a1 | 337 | NADPH dehydrogenase NamA {Bacillus subtilis [TaxId | 97.29 | |
| d1juba_ | 311 | Dihydroorotate dehydrogenase {Lactococcus lactis, | 97.28 | |
| d1d3ga_ | 367 | Dihydroorotate dehydrogenase {Human (Homo sapiens) | 97.25 | |
| d1jvna1 | 323 | Cyclase subunit (or domain) of imidazoleglycerolph | 97.22 | |
| d1tqja_ | 221 | D-ribulose-5-phosphate 3-epimerase {Synechocystis | 97.19 | |
| d1piia2 | 254 | Indole-3-glycerophosphate synthase, IPGS {Escheric | 97.04 | |
| d1ps9a1 | 330 | 2,4-dienoyl-CoA reductase, N-terminal domain {Esch | 97.01 | |
| d1vyra_ | 363 | Pentaerythritol tetranirate reductase {Enterobacte | 97.0 | |
| d1i4na_ | 251 | Indole-3-glycerophosphate synthase, IPGS {Thermoto | 96.97 | |
| d1tv5a1 | 409 | Dihydroorotate dehydrogenase {Plasmodium falciparu | 96.96 | |
| d1nsja_ | 205 | N-(5'phosphoribosyl)antranilate isomerase, PRAI {T | 96.87 | |
| d1twda_ | 247 | Copper homeostasis protein CutC {Shigella flexneri | 96.63 | |
| d1vhna_ | 305 | Putative flavin oxidoreducatase TM0096 {Thermotoga | 96.54 | |
| d1jr1a1 | 378 | Inosine monophosphate dehydrogenase (IMPDH) {Chine | 96.45 | |
| d1hg3a_ | 224 | Triosephosphate isomerase {Archaeon Pyrococcus woe | 96.31 | |
| d1piia1 | 198 | N-(5'phosphoribosyl)antranilate isomerase, PRAI {E | 96.28 | |
| d1v5xa_ | 200 | N-(5'phosphoribosyl)antranilate isomerase, PRAI {T | 96.27 | |
| d1w0ma_ | 226 | Triosephosphate isomerase {Thermoproteus tenax [Ta | 96.25 | |
| d1ka9f_ | 251 | Cyclase subunit (or domain) of imidazoleglycerolph | 96.12 | |
| d1vcfa1 | 310 | Isopentenyl-diphosphate delta-isomerase {Thermus t | 96.12 | |
| d1thfd_ | 253 | Cyclase subunit (or domain) of imidazoleglycerolph | 96.1 | |
| d1gwja_ | 374 | Morphinone reductase {Pseudomonas putida [TaxId: 3 | 96.03 | |
| d1h5ya_ | 252 | Cyclase subunit (or domain) of imidazoleglycerolph | 95.79 | |
| d1icpa_ | 364 | 12-oxophytodienoate reductase (OPR, OYE homolog) { | 95.49 | |
| d1znna1 | 254 | Pyridoxal biosynthesis lyase PdxS {Bacillus stearo | 95.45 | |
| d1jvna1 | 323 | Cyclase subunit (or domain) of imidazoleglycerolph | 95.3 | |
| d1p0ka_ | 329 | Isopentenyl-diphosphate delta-isomerase {Bacillus | 95.18 | |
| d1eepa_ | 388 | Inosine monophosphate dehydrogenase (IMPDH) {Lyme | 94.96 | |
| d1vzwa1 | 239 | Phosphoribosylformimino-5-aminoimidazole carboxami | 94.29 | |
| d1tb3a1 | 349 | Hydroxyacid oxidase {Rat (Rattus norvegicus) [TaxI | 94.08 | |
| d1zfja1 | 365 | Inosine monophosphate dehydrogenase (IMPDH) {Strep | 94.03 | |
| d7reqa2 | 168 | Methylmalonyl-CoA mutase alpha subunit, C-terminal | 93.74 | |
| d1qo2a_ | 241 | Phosphoribosylformimino-5-aminoimidazole carboxami | 93.7 | |
| d1ccwa_ | 137 | Glutamate mutase, small subunit {Clostridium cochl | 93.67 | |
| d1vc4a_ | 254 | Indole-3-glycerophosphate synthase, IPGS {Thermus | 93.51 | |
| d2b4ga1 | 312 | Dihydroorotate dehydrogenase {Trypanosoma brucei [ | 93.5 | |
| d3bula2 | 156 | Methionine synthase, C-terminal domain {Escherichi | 92.84 | |
| d1trea_ | 255 | Triosephosphate isomerase {Escherichia coli [TaxId | 92.78 | |
| d1eepa_ | 388 | Inosine monophosphate dehydrogenase (IMPDH) {Lyme | 92.58 | |
| d1kv5a_ | 249 | Triosephosphate isomerase {Trypanosoma brucei [Tax | 92.42 | |
| d2btma_ | 251 | Triosephosphate isomerase {Bacillus stearothermoph | 92.26 | |
| d1o5xa_ | 246 | Triosephosphate isomerase {Plasmodium falciparum [ | 92.1 | |
| d1km4a_ | 212 | Orotidine 5'-monophosphate decarboxylase (OMP deca | 91.61 | |
| d1vrda1 | 330 | Inosine monophosphate dehydrogenase (IMPDH) {Therm | 91.47 | |
| d1neya_ | 247 | Triosephosphate isomerase {Baker's yeast (Saccharo | 91.07 | |
| d1n55a_ | 249 | Triosephosphate isomerase {Leishmania mexicana [Ta | 91.06 | |
| d1m6ja_ | 260 | Triosephosphate isomerase {Entamoeba histolytica [ | 90.88 | |
| d2cu0a1 | 368 | Inosine monophosphate dehydrogenase (IMPDH) {Pyroc | 90.37 | |
| d1xrsb1 | 160 | D-lysine 5,6-aminomutase beta subunit KamE, C-term | 90.14 | |
| d1b9ba_ | 252 | Triosephosphate isomerase {Thermotoga maritima [Ta | 89.88 | |
| d1mo0a_ | 257 | Triosephosphate isomerase {Nematode (Caenorhabditi | 89.81 | |
| d1zfja1 | 365 | Inosine monophosphate dehydrogenase (IMPDH) {Strep | 89.71 | |
| d1r2ra_ | 246 | Triosephosphate isomerase {Rabbit (Oryctolagus cun | 89.71 | |
| d1aw1a_ | 255 | Triosephosphate isomerase {Vibrio marinus [TaxId: | 89.15 | |
| d1goxa_ | 359 | Glycolate oxidase {Spinach (Spinacia oleracea) [Ta | 88.99 | |
| d7reqb2 | 163 | Methylmalonyl-CoA mutase beta subunit, C-terminal | 88.9 | |
| d1p4ca_ | 353 | Membrane-associated (S)-mandelate dehydrogenase {P | 88.85 | |
| d1pvna1 | 362 | Inosine monophosphate dehydrogenase (IMPDH) {Tritr | 88.24 | |
| d1p0ka_ | 329 | Isopentenyl-diphosphate delta-isomerase {Bacillus | 86.84 | |
| d1o66a_ | 260 | Ketopantoate hydroxymethyltransferase PanB {Neisse | 85.71 | |
| d1jr1a1 | 378 | Inosine monophosphate dehydrogenase (IMPDH) {Chine | 85.0 | |
| d1q45a_ | 380 | 12-oxophytodienoate reductase (OPR, OYE homolog) { | 84.63 | |
| d1kbia1 | 414 | Flavocytochrome b2, C-terminal domain {Baker's yea | 84.0 | |
| d1o4ua1 | 170 | Quinolinic acid phosphoribosyltransferase (Nicotin | 83.28 | |
| d1qapa1 | 167 | Quinolinic acid phosphoribosyltransferase (Nicotin | 83.17 | |
| d1l6sa_ | 323 | 5-aminolaevulinate dehydratase, ALAD (porphobilino | 82.46 | |
| d2czda1 | 206 | Orotidine 5'-monophosphate decarboxylase (OMP deca | 82.02 | |
| d1gvfa_ | 284 | Tagatose-1,6-bisphosphate aldolase {Escherichia co | 82.0 | |
| d1tx2a_ | 273 | Dihydropteroate synthetase {Bacillus anthracis [Ta | 81.09 | |
| d1ajza_ | 282 | Dihydropteroate synthetase {Escherichia coli [TaxI | 80.39 | |
| d1qpoa1 | 169 | Quinolinic acid phosphoribosyltransferase (Nicotin | 80.04 |
| >d1qopa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Trp synthase alpha-subunit species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=2.8e-39 Score=284.78 Aligned_cols=197 Identities=18% Similarity=0.281 Sum_probs=169.6
Q ss_pred cccccccCCCCCCCcchHHHHHHHHHhhCCCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHH-------------
Q psy9039 14 DVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTR------------- 80 (251)
Q Consensus 14 ~~p~~~~~pG~P~~~~~~~~i~~~a~~~a~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~------------- 80 (251)
++||+|+ |||+++.+.+.+ ++|+++|+ |.|| +|+|||||++|||+||+|..+
T Consensus 19 li~y~t~--G~P~~~~~~~~~--------~~l~~~Ga-DiiE----lGiPfSDP~aDGpvIq~a~~~al~~G~~~~~~~~ 83 (267)
T d1qopa_ 19 FVPFVTL--GDPGIEQSLKII--------DTLIDAGA-DALE----LGVPFSDPLADGPTIQNANLRAFAAGVTPAQCFE 83 (267)
T ss_dssp EEEEEET--TSSCHHHHHHHH--------HHHHHTTC-SSEE----EECCCSCCTTCCHHHHHHHHHHHHTTCCHHHHHH
T ss_pred EEEEEeC--cCCCHHHHHHHH--------HHHHHcCC-CEEE----ECCCCCcccccchHHHhhhhhcccccchhhhhhh
Confidence 7999999 999999999999 88999999 9997 499999999999999999997
Q ss_pred HHHHHHHhCCCCccEEEEEeeCChHHHHHHHHHcCccceecccccccccCCCceeecC-----cchhHHHHHhcCCCcch
Q psy9039 81 LCAEIRKVLPPSVPVGVQILSGCNKAALATAQAAGLDFIRAESFVFGHMADEGLMNAQ-----AGPLLRYRKQIGADNVL 155 (251)
Q Consensus 81 ~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g~~Fir~~~~~~~~~~~~Gli~~d-----a~e~~~~r~~l~~~~i~ 155 (251)
+++++|+...+ +|+.+|.|+|+ +.++++ .+|++.+ ..+|.+|+|+|| ..++....++.+.+.|.
T Consensus 84 ~~~~~r~~~~~-~pivlm~Y~N~-i~~~G~-----~~f~~~~----~~~Gv~GliipDlP~ee~~~~~~~~~~~~l~~I~ 152 (267)
T d1qopa_ 84 MLAIIREKHPT-IPIGLLMYANL-VFNNGI-----DAFYARC----EQVGVDSVLVADVPVEESAPFRQAALRHNIAPIF 152 (267)
T ss_dssp HHHHHHHHCSS-SCEEEEECHHH-HHTTCH-----HHHHHHH----HHHTCCEEEETTCCGGGCHHHHHHHHHTTCEEEC
T ss_pred hhhhhcccccc-cceEEEeeccc-hhhcCc-----hHHHHHH----HhcCCCceeccchhhhhhHHHHHhhhccCceEEE
Confidence 55788887543 69999999998 899998 4999875 567799999999 55566666777777777
Q ss_pred hhhhhHhhccCCCCCCcccHHHHHHHhh-h-ccccEEEecCCCCCCCCCH-HHHHHHHhcCCCCEEEecCC-ChHhHHHh
Q psy9039 156 VFTDIKKKHSSHAITADVDITETAKAAS-F-FLSDGLIITGNATGDPADV-SQLMSVKNAVDLPILIGSGV-TSDNVEHY 231 (251)
Q Consensus 156 i~a~v~~k~~~~~~~~~~~i~~~a~~a~-~-~~~D~v~VTG~~~g~~~~~-~~l~~vr~~~~~PV~vG~GI-~~~~v~~~ 231 (251)
+++ | +|+++|++++++.+. | |+++..+|||.+.....+. +.++++|+.+++||++|||| |++++++.
T Consensus 153 lva--------P-tt~~~Ri~~i~~~a~gFiY~vs~~GvTG~~~~~~~~~~~~i~~ik~~t~~Pv~vGFGI~~~e~v~~~ 223 (267)
T d1qopa_ 153 ICP--------P-NADDDLLRQVASYGRGYTYLLSRSGVTGAENRGALPLHHLIEKLKEYHAAPALQGFGISSPEQVSAA 223 (267)
T ss_dssp EEC--------T-TCCHHHHHHHHHHCCSCEEEESSSSCCCSSSCC--CCHHHHHHHHHTTCCCEEEESSCCSHHHHHHH
T ss_pred Eec--------c-cccHHHHHHHHhhCchhhhhhcccccCCcccccchhHHHHHHHHhhhccCCceeecccCCHHHHHHH
Confidence 752 4 477889999999987 8 8999999999998776664 78999999999999999999 69999886
Q ss_pred h-c-CCEEEEeceEee
Q psy9039 232 M-T-ADALIIGSHFKQ 245 (251)
Q Consensus 232 ~-~-ADGvIVGS~~~~ 245 (251)
+ . ||||||||+|++
T Consensus 224 ~~~~ADGvIVGSAivk 239 (267)
T d1qopa_ 224 VRAGAAGAISGSAIVK 239 (267)
T ss_dssp HHTTCSEEEECHHHHH
T ss_pred HhcCCCEEEECHHHHH
Confidence 6 4 999999999986
|
| >d1geqa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Trp synthase alpha-subunit species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=2.2e-39 Score=282.41 Aligned_cols=196 Identities=16% Similarity=0.250 Sum_probs=162.8
Q ss_pred ecccccccCCCCCCCcchHHHHHHHHHhhCCCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHH------------
Q psy9039 13 HDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTR------------ 80 (251)
Q Consensus 13 ~~~p~~~~~pG~P~~~~~~~~i~~~a~~~a~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~------------ 80 (251)
-|+||+|+ |+|+++.|.+.+ ++|. .|+ |.|| +|+|||||++|||+||.|..|
T Consensus 6 ali~y~ta--G~P~~~~s~~~l--------~~l~-~g~-d~iE----iGiPfSDP~aDGpvIq~A~~rAl~~G~~~~~~~ 69 (248)
T d1geqa_ 6 SLIPYLTA--GDPDKQSTLNFL--------LALD-EYA-GAIE----LGIPFSDPIADGKTIQESHYRALKNGFKLREAF 69 (248)
T ss_dssp EEEEEEET--TSSCHHHHHHHH--------HHHG-GGB-SCEE----EECCCSCCTTSCHHHHHHHHHHHHTTCCHHHHH
T ss_pred ceEEEEcC--cCCCHHHHHHHH--------HHHH-cCC-CEEE----ECCCCCCccccCHHHHHhhhHHHhCCccHHHHH
Confidence 58999999 999999999988 7775 499 9997 599999999999999999997
Q ss_pred -HHHHHHHhCCCCccEEEEEeeCChHHHHHHHHHcCccceecccccccccCCCceeecC-----cchhHHHHHhcCCCcc
Q psy9039 81 -LCAEIRKVLPPSVPVGVQILSGCNKAALATAQAAGLDFIRAESFVFGHMADEGLMNAQ-----AGPLLRYRKQIGADNV 154 (251)
Q Consensus 81 -~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g~~Fir~~~~~~~~~~~~Gli~~d-----a~e~~~~r~~l~~~~i 154 (251)
+++++|+..+ +|+.+|.|+|+ +.++++ .+|++.+ ...|.+|++.|| ++++....++.+.+.|
T Consensus 70 ~~~~~~r~~~~--~pivlm~Y~N~-i~~~G~-----~~f~~~~----~~~Gv~GliipDLP~eE~~~~~~~~~~~gl~~I 137 (248)
T d1geqa_ 70 WIVKEFRRHSS--TPIVLMTYYNP-IYRAGV-----RNFLAEA----KASGVDGILVVDLPVFHAKEFTEIAREEGIKTV 137 (248)
T ss_dssp HHHHHHHTTCC--CCEEEEECHHH-HHHHCH-----HHHHHHH----HHHTCCEEEETTCCGGGHHHHHHHHHHHTCEEE
T ss_pred HHHHHHhhcCC--CcEEEEecccc-ccccCH-----HHHhhhh----cccCeeEEeccCCcHHHHHHHHhhccccCcceE
Confidence 4588888766 79999999998 899998 5999976 567799999999 4455666677787777
Q ss_pred hhhhhhHhhccCCCCCCcccHHHHHHHhh-h-ccccEEEecCCCCCCCCCH-HHHHHHHhcCCCCEEEecCC-ChHhHHH
Q psy9039 155 LVFTDIKKKHSSHAITADVDITETAKAAS-F-FLSDGLIITGNATGDPADV-SQLMSVKNAVDLPILIGSGV-TSDNVEH 230 (251)
Q Consensus 155 ~i~a~v~~k~~~~~~~~~~~i~~~a~~a~-~-~~~D~v~VTG~~~g~~~~~-~~l~~vr~~~~~PV~vG~GI-~~~~v~~ 230 (251)
.+++ | +|+++|++++++.+. | |+++..+|||.++..+... +.++++|+++++||++|||| |++++++
T Consensus 138 ~lva--------P-tt~~~ri~~i~~~s~gFiY~vs~~GvTG~~~~~~~~~~~~v~~vk~~t~~Pv~vGFGI~~~e~v~~ 208 (248)
T d1geqa_ 138 FLAA--------P-NTPDERLKVIDDMTTGFVYLVSLYGTTGAREEIPKTAYDLLRRAKRICRNKVAVGFGVSKREHVVS 208 (248)
T ss_dssp EEEC--------T-TCCHHHHHHHHHHCSSEEEEECCC-------CCCHHHHHHHHHHHHHCSSCEEEESCCCSHHHHHH
T ss_pred EEec--------c-cchhHHHHHHHhcCCCeEEEEecccccccchhhhhhHHHHHHHHhhhcccceeeecccCCHHHHHH
Confidence 7762 4 378899999999987 7 8999999999998776654 77999999999999999999 7999998
Q ss_pred hh-c-CCEEEEeceEee
Q psy9039 231 YM-T-ADALIIGSHFKQ 245 (251)
Q Consensus 231 ~~-~-ADGvIVGS~~~~ 245 (251)
++ . ||||||||+|++
T Consensus 209 ~~~~~ADGvIVGSaiv~ 225 (248)
T d1geqa_ 209 LLKEGANGVVVGSALVK 225 (248)
T ss_dssp HHHTTCSEEEECHHHHH
T ss_pred HHhcCCCEEEECHHHHH
Confidence 77 4 999999999965
|
| >d1ujpa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Trp synthase alpha-subunit species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=3.6e-39 Score=283.86 Aligned_cols=195 Identities=20% Similarity=0.307 Sum_probs=156.0
Q ss_pred ecccccccCCCCCCCcchHHHHHHHHHhhCCCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHH------------
Q psy9039 13 HDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTR------------ 80 (251)
Q Consensus 13 ~~~p~~~~~pG~P~~~~~~~~i~~~a~~~a~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~------------ 80 (251)
-|+||+++ |||+++.+.+.+ ++|.+ |+ |.|| +|+|||||++|||+||.|..|
T Consensus 17 ali~yita--G~P~~~~~~~~l--------~~l~~-ga-DiiE----lGiPfSDP~ADGpvIq~A~~rAL~~G~~~~~~~ 80 (271)
T d1ujpa_ 17 ALIPYLTA--GFPSREGFLQAV--------EEVLP-YA-DLLE----IGLPYSDPLGDGPVIQRASELALRKGMSVQGAL 80 (271)
T ss_dssp EEEEEEET--TSSCHHHHHHHH--------HHHGG-GC-SSEE----EECCCCC----CHHHHHHHHHHHHTTCCHHHHH
T ss_pred eEEEEEeC--cCCCHHHHHHHH--------HHHHc-CC-CEEE----eCCCCCCcccCCCeeeeeeeeccccccchhhHH
Confidence 48999999 999999999988 77766 99 9997 599999999999999999997
Q ss_pred -HHHHHHHhCCCCccEEEEEeeCChHHHHHHHHHcCccceecccccccccCCCceeecC-----cchhHHHHHhcCCCcc
Q psy9039 81 -LCAEIRKVLPPSVPVGVQILSGCNKAALATAQAAGLDFIRAESFVFGHMADEGLMNAQ-----AGPLLRYRKQIGADNV 154 (251)
Q Consensus 81 -~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g~~Fir~~~~~~~~~~~~Gli~~d-----a~e~~~~r~~l~~~~i 154 (251)
+++++|+..+ +|+.+|+|+|+ +.++++ .+|++.+ ...|.+|+|.|| ..++....++.+.+.|
T Consensus 81 ~~~~~~r~~~~--~pivlm~Y~N~-i~~~G~-----~~F~~~~----~~aGvdGliipDLP~ee~~~~~~~~~~~gl~~I 148 (271)
T d1ujpa_ 81 ELVREVRALTE--KPLFLMTYLNP-VLAWGP-----ERFFGLF----KQAGATGVILPDLPPDEDPGLVRLAQEIGLETV 148 (271)
T ss_dssp HHHHHHHHHCC--SCEEEECCHHH-HHHHCH-----HHHHHHH----HHHTCCEEECTTCCGGGCHHHHHHHHHHTCEEE
T ss_pred HHHHHHhcccC--CcEEEEeechh-hhhCCc-----hhHhHHH----hhcCceeEeccchhhhhHHHHHHHhhcccccee
Confidence 5588998887 79999999998 899998 4999986 566799999999 5677777888888788
Q ss_pred hhhhhhHhhccCCCCCCcccHHHHHHHhh-h-ccccEEEecCCCCCCCCCH-HHHHHHHhcCCCCEEEecCC-ChHhHHH
Q psy9039 155 LVFTDIKKKHSSHAITADVDITETAKAAS-F-FLSDGLIITGNATGDPADV-SQLMSVKNAVDLPILIGSGV-TSDNVEH 230 (251)
Q Consensus 155 ~i~a~v~~k~~~~~~~~~~~i~~~a~~a~-~-~~~D~v~VTG~~~g~~~~~-~~l~~vr~~~~~PV~vG~GI-~~~~v~~ 230 (251)
.+++ | +|+++|+.++++.+. | |+++..+|||.++..+... +.++++|+.+++||++|||| ++++++.
T Consensus 149 ~lvs--------P-tT~~eRi~~i~~~s~GFIY~Vs~~GvTG~~~~~~~~~~~~i~~ik~~t~~Pv~vGFGIs~~e~v~~ 219 (271)
T d1ujpa_ 149 FLLA--------P-TSTDARIATVVRHATGFVYAVSVTGVTGMRERLPEEVKDLVRRIKARTALPVAVGFGVSGKATAAQ 219 (271)
T ss_dssp CEEC--------T-TCCHHHHHHHHTTCCSCEEEECC------------CCHHHHHHHHTTCCSCEEEESCCCSHHHHHH
T ss_pred eccC--------C-CcchHHHHHHHHhCcchhhhhcccCccCccccchHHHHHHHHhhhccccCCeEEeCCCCCHHHHHH
Confidence 7762 4 378899999999987 8 8999999999998776654 78999999999999999999 6899887
Q ss_pred hhc-CCEEEEeceEee
Q psy9039 231 YMT-ADALIIGSHFKQ 245 (251)
Q Consensus 231 ~~~-ADGvIVGS~~~~ 245 (251)
+ . ||||||||+|++
T Consensus 220 ~-~~ADGvIVGSAiV~ 234 (271)
T d1ujpa_ 220 A-AVADGVVVGSALVR 234 (271)
T ss_dssp H-TTSSEEEECHHHHH
T ss_pred h-CCCCEEEEcHHHHH
Confidence 5 6 999999999975
|
| >d1rd5a_ c.1.2.4 (A:) Trp synthase alpha-subunit {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Trp synthase alpha-subunit species: Maize (Zea mays) [TaxId: 4577]
Probab=100.00 E-value=2.9e-37 Score=270.98 Aligned_cols=193 Identities=23% Similarity=0.299 Sum_probs=165.0
Q ss_pred ecccccccCCCCCCCcchHHHHHHHHHhhCCCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHH------------
Q psy9039 13 HDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTR------------ 80 (251)
Q Consensus 13 ~~~p~~~~~pG~P~~~~~~~~i~~~a~~~a~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~------------ 80 (251)
-++||+++ |||+++.+.+.+ ++|.++|+ |.|| +|+|||||++|||+||.|+.+
T Consensus 18 ~li~y~~a--G~P~~~~~~~~l--------~~l~~~G~-DiiE----lGiPfSDP~aDGpvIq~a~~rAL~~G~~~~~~~ 82 (261)
T d1rd5a_ 18 AFIPYITA--GDPDLATTAEAL--------RLLDGCGA-DVIE----LGVPCSDPYIDGPIIQASVARALASGTTMDAVL 82 (261)
T ss_dssp EEEEEEET--TSSCHHHHHHHH--------HHHHHTTC-SSEE----EECCCSCCTTSCHHHHHHHHHHHTTTCCHHHHH
T ss_pred eEEEEEeC--cCCCHHHHHHHH--------HHHHHcCC-CEEE----ECCCCCCcCcCCcceeeeeeeccccCcchhhhh
Confidence 47999999 999999999999 89999999 9997 499999999999999999997
Q ss_pred -HHHHHHHhCCCCccEEEEEeeCChHHHHHHHHHcCccceecccccccccCCCceeecC-----cchhHHHHHhcCCCcc
Q psy9039 81 -LCAEIRKVLPPSVPVGVQILSGCNKAALATAQAAGLDFIRAESFVFGHMADEGLMNAQ-----AGPLLRYRKQIGADNV 154 (251)
Q Consensus 81 -~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g~~Fir~~~~~~~~~~~~Gli~~d-----a~e~~~~r~~l~~~~i 154 (251)
+++++|+..+ +|+.+|.|+|+ ...++ +..+ ...|.+|+|.|| +.++....++.+.+.|
T Consensus 83 ~~~~~~r~~~~--~p~ilm~Y~n~-~~~~~---------~~~~----~~~GvdG~IipDlp~eE~~~~~~~~~~~gl~~I 146 (261)
T d1rd5a_ 83 EMLREVTPELS--CPVVLLSYYKP-IMFRS---------LAKM----KEAGVHGLIVPDLPYVAAHSLWSEAKNNNLELV 146 (261)
T ss_dssp HHHHHHGGGCS--SCEEEECCSHH-HHSCC---------THHH----HHTTCCEEECTTCBTTTHHHHHHHHHHTTCEEC
T ss_pred hhhhccccccc--Cceeeeeeecc-hhhHH---------HHHH----HhcCceeeeecCccHHHHHHHHHHHhccccceE
Confidence 5588888777 79999999997 54433 3321 446799999999 5555666677777777
Q ss_pred hhhhhhHhhccCCCCCCcccHHHHHHHhh-h-ccccEEEecCCCCCCCCCH-HHHHHHHhcCCCCEEEecCC-ChHhHHH
Q psy9039 155 LVFTDIKKKHSSHAITADVDITETAKAAS-F-FLSDGLIITGNATGDPADV-SQLMSVKNAVDLPILIGSGV-TSDNVEH 230 (251)
Q Consensus 155 ~i~a~v~~k~~~~~~~~~~~i~~~a~~a~-~-~~~D~v~VTG~~~g~~~~~-~~l~~vr~~~~~PV~vG~GI-~~~~v~~ 230 (251)
.+++ | +|+++|++++++.+. | |+++..+|||.+....... +.++++|+.+++||++|||| +++++++
T Consensus 147 ~lva--------P-tt~~~Ri~~i~~~a~gFvY~vs~~GvTG~~~~~~~~~~~~i~~ik~~t~~Pi~vGFGI~~~e~v~~ 217 (261)
T d1rd5a_ 147 LLTT--------P-AIPEDRMKEITKASEGFVYLVSVNGVTGPRANVNPRVESLIQEVKKVTNKPVAVGFGISKPEHVKQ 217 (261)
T ss_dssp EEEC--------T-TSCHHHHHHHHHHCCSCEEEECSSCCBCTTSCBCTHHHHHHHHHHHHCSSCEEEESCCCSHHHHHH
T ss_pred EEec--------c-CCchhHHHHHHhcCcchhhhhhccCcccccccchhHHHHHHHHhhhccCCCeEEEcCCCCHHHHHH
Confidence 7762 4 378899999999987 8 8999999999998776665 67999999999999999999 7999999
Q ss_pred hhc--CCEEEEeceEee
Q psy9039 231 YMT--ADALIIGSHFKQ 245 (251)
Q Consensus 231 ~~~--ADGvIVGS~~~~ 245 (251)
+.+ ||||||||+|++
T Consensus 218 ~~~~gaDGvIVGSaiv~ 234 (261)
T d1rd5a_ 218 IAQWGADGVIIGSAMVR 234 (261)
T ss_dssp HHHTTCSEEEECHHHHH
T ss_pred HHhcCCCEEEECHHHHH
Confidence 986 999999999975
|
| >d2f6ua1 c.1.4.1 (A:1001-1231) (S)-3-O-geranylgeranylglyceryl phosphate synthase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: (S)-3-O-geranylgeranylglyceryl phosphate synthase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.86 E-value=1.2e-23 Score=180.68 Aligned_cols=189 Identities=14% Similarity=0.094 Sum_probs=121.9
Q ss_pred cccCCCCCCCcchHHHHHHHHHhhCCCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEE
Q psy9039 18 VLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGV 97 (251)
Q Consensus 18 ~~~~pG~P~~~~~~~~i~~~a~~~a~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gv 97 (251)
+|. +||+++.|.+.+ ++|.++|+ |.||| | ||||+++||.++.. ++.+ ... +|.++
T Consensus 9 it~--~DPd~~~t~~~i--------~~l~~~Ga-D~IEl----G--fSdpi~~g~~~~~i-----~~~~-~~~--lp~~~ 63 (231)
T d2f6ua1 9 ITK--LDPDRTNTDEII--------KAVADSGT-DAVMI----S--GTQNVTYEKARTLI-----EKVS-QYG--LPIVV 63 (231)
T ss_dssp EEE--ECTTSCCCHHHH--------HHHHTTTC-SEEEE----C--CCTTCCHHHHHHHH-----HHHT-TSC--CCEEE
T ss_pred eee--ECCCCccHHHHH--------HHHHHcCC-CEEEE----c--CCCccccccHHHHH-----HHHH-hCC--CCeEE
Confidence 566 899999999999 89999999 99986 6 99999999987742 2333 233 35443
Q ss_pred --------------------EEeeCChHHHHHHHHHcCccceecccccccccCCCceeecCcchhHHHHHhcCCCcchhh
Q psy9039 98 --------------------QILSGCNKAALATAQAAGLDFIRAESFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVF 157 (251)
Q Consensus 98 --------------------n~~~N~~~~~~~ia~a~g~~Fir~~~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~ 157 (251)
|.|+|+ .+.++... ..++|+..+ ...+..++..++ .+...+........+..+
T Consensus 64 ~~~~~~~~~~~~d~~~~~~~m~~~n~-~~~~g~~~-~~~~~~~~~----~~~~i~~~~~~~-~~~e~~~~~~~~~~~~~i 136 (231)
T d2f6ua1 64 EPSDPSNVVYDVDYLFVPTVLNSADG-DWITGKHA-QWVRMHYEN----LQKFTEIIESEF-IQIEGYIVLNPDSAVARV 136 (231)
T ss_dssp CCSSCCCCCCCSSEEEEEEETTBSBG-GGTTHHHH-HHHHTTGGG----HHHHHHHHHSTT-EEEEEEEECCTTSHHHHH
T ss_pred EecchhhcccccccceeehhhccCCh-hhhhhhHH-HHHHHHHhc----ccceeecCCCch-hhhhHHHHhCCCCCeeEe
Confidence 334454 45455421 112343321 111111111111 000001111111112222
Q ss_pred hhhHhhccCCCCCCcccHHHHHHHhh-h-ccccEEEecCCCCCCCCCHHHHHHHHhc-CCCCEEEecCC-ChHhHHHhhc
Q psy9039 158 TDIKKKHSSHAITADVDITETAKAAS-F-FLSDGLIITGNATGDPADVSQLMSVKNA-VDLPILIGSGV-TSDNVEHYMT 233 (251)
Q Consensus 158 a~v~~k~~~~~~~~~~~i~~~a~~a~-~-~~~D~v~VTG~~~g~~~~~~~l~~vr~~-~~~PV~vG~GI-~~~~v~~~~~ 233 (251)
. + .+++.+++++++.+. | |+++..+|||.+.+.....+.+.++++. +++||++|||| |+++++++.+
T Consensus 137 ---~-----~-~~~~~~~~~i~~~a~~~~y~vs~~gvtg~~~~~~~~~~~~~~~~k~~~~~Pv~VGFGI~s~e~a~~~~~ 207 (231)
T d2f6ua1 137 ---T-----K-ALCNIDKELAASYALVGEKLFNLPIIYIEYSGTYGNPELVAEVKKVLDKARLFYGGGIDSREKAREMLR 207 (231)
T ss_dssp ---T-----T-BCCCCCHHHHHHHHHHHHHTTCCSEEEEECTTSCCCHHHHHHHHHHCSSSEEEEESCCCSHHHHHHHHH
T ss_pred ---c-----c-CCCCCcHHHHHHHHHhhhhhcceEEEEEecccccchhhHHHHHHHhcCCCCEEEEeCcCCHHHHHHHHh
Confidence 1 2 256678899988876 6 8999999999987777777776666665 57999999999 7999999998
Q ss_pred -CCEEEEeceEeecC
Q psy9039 234 -ADALIIGSHFKQGG 247 (251)
Q Consensus 234 -ADGvIVGS~~~~~g 247 (251)
|||+||||+|++.+
T Consensus 208 ~ADgvIVGSaive~~ 222 (231)
T d2f6ua1 208 YADTIIVGNVIYEKG 222 (231)
T ss_dssp HSSEEEECHHHHHHC
T ss_pred cCCEEEEChHHhccc
Confidence 99999999998753
|
| >d1viza_ c.1.4.1 (A:) PcrB protein homolog YerE {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: PcrB protein homolog YerE species: Bacillus subtilis [TaxId: 1423]
Probab=99.81 E-value=2.6e-21 Score=165.83 Aligned_cols=187 Identities=10% Similarity=0.123 Sum_probs=106.4
Q ss_pred CCCCcchHHHHHHHHHhhCCCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCC
Q psy9039 24 GPEITANMTRLCAEIRKVLPPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGC 103 (251)
Q Consensus 24 ~P~~~~~~~~i~~~a~~~a~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~ 103 (251)
||+.+.|.+.+ ++|.++|+ |.||| | ||||+++||++|. .++++.++ +|+.++.|.|.
T Consensus 15 DPd~~~t~e~i--------~~l~e~Ga-DiIEl----G--fSDpiadg~viq~------~~~~~~~~--~p~il~~~~~~ 71 (229)
T d1viza_ 15 DPNKDLPDEQL--------EILCESGT-DAVII----G--GSDGVTEDNVLRM------MSKVRRFL--VPCVLEVSAIE 71 (229)
T ss_dssp CTTSCCCHHHH--------HHHHTSCC-SEEEE----C--C----CHHHHHHH------HHHHTTSS--SCEEEECSCGG
T ss_pred CCCCCCHHHHH--------HHHHHcCC-CEEEE----c--CCCcccccHHHHH------HHHhhcCC--CCEEEEecccc
Confidence 89999999999 88999999 99986 6 9999999999983 34566677 79999999997
Q ss_pred hHHHHHHHHHcCccceecccccccccCCCceeecCcchh--HHHHHhcCCCcc----hhhh----hhHhhccCCCC-CCc
Q psy9039 104 NKAALATAQAAGLDFIRAESFVFGHMADEGLMNAQAGPL--LRYRKQIGADNV----LVFT----DIKKKHSSHAI-TAD 172 (251)
Q Consensus 104 ~~~~~~ia~a~g~~Fir~~~~~~~~~~~~Gli~~da~e~--~~~r~~l~~~~i----~i~a----~v~~k~~~~~~-~~~ 172 (251)
..+.+. ..|+..+.. .+.+..+..+.... -.....++.+.. .++. +... ...+.. .+.
T Consensus 72 -~~~~~~-----~~~~~~~~~----~g~~~~~~~~~~~~~~~~i~~~l~~de~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 140 (229)
T d1viza_ 72 -AIVPGF-----DLYFIPSVL----NSKNADWIVGMHQKAMKEYGELMSMEEIVAEGYCIANPDCKAAA-LTEADADLNM 140 (229)
T ss_dssp -GCCSCC-----SEEEEEEET----TBSSGGGTTHHHHHHHHHCHHHHHHSCEEEEEEEECCTTSHHHH-HTTBCCCCCH
T ss_pred -eeeccc-----chhhHHHHH----cccCHHHHhhhHHhhhccccCCCCcccCHHHHHHHHhcccceee-eeccCCCCCH
Confidence 444433 366665322 22332221110000 000000000000 0000 0000 011211 122
Q ss_pred ccHHHHHHHhhhccccEEEecCCCCCCCCCHHHHHHHHhcC-CCCEEEecCC-ChHhHHHhhc-CCEEEEeceEeec
Q psy9039 173 VDITETAKAASFFLSDGLIITGNATGDPADVSQLMSVKNAV-DLPILIGSGV-TSDNVEHYMT-ADALIIGSHFKQG 246 (251)
Q Consensus 173 ~~i~~~a~~a~~~~~D~v~VTG~~~g~~~~~~~l~~vr~~~-~~PV~vG~GI-~~~~v~~~~~-ADGvIVGS~~~~~ 246 (251)
.++...+..+..|+.....++++.+. .+.+.+..+++.. ++|+++|||| |+++++++.+ ||||||||+|+++
T Consensus 141 ~~~~~~a~~~~~~~~~~~~~~~tg~~--~~~~~~~~v~~~~~~~Pl~VGFGIst~e~a~~v~~~ADgVVVGSAiv~~ 215 (229)
T d1viza_ 141 DDIVAYARVSELLQLPIFYLEYSGVL--GDIEAVKKTKAVLETSTLFYGGGIKDAETAKQYAEHADVIVVGNAVYED 215 (229)
T ss_dssp HHHHHHHHHHHHTTCSEEEEECTTSC--CCHHHHHHHHHTCSSSEEEEESSCCSHHHHHHHHTTCSEEEECTHHHHC
T ss_pred HHHHHHHhhccceeEEEEEEeccCcc--ccchhHHHHHhhccCcceEEEcccCCHHHHHHHHcCCCEEEECHHHHhh
Confidence 23333333344244444444443322 2456666666654 7999999999 7999999998 9999999999764
|
| >d1y0ea_ c.1.2.5 (A:) Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: NanE-like domain: Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE species: Staphylococcus aureus [TaxId: 1280]
Probab=98.91 E-value=1.6e-08 Score=83.19 Aligned_cols=67 Identities=24% Similarity=0.237 Sum_probs=51.3
Q ss_pred HHHhhhccccEEEecCCC---C--CCCC---CHHHHHHHHhcCCCCEEEecCC-ChHhHHHhhc--CCEEEEeceEee
Q psy9039 179 AKAASFFLSDGLIITGNA---T--GDPA---DVSQLMSVKNAVDLPILIGSGV-TSDNVEHYMT--ADALIIGSHFKQ 245 (251)
Q Consensus 179 a~~a~~~~~D~v~VTG~~---~--g~~~---~~~~l~~vr~~~~~PV~vG~GI-~~~~v~~~~~--ADGvIVGS~~~~ 245 (251)
+..+...|+|++++++.. . +... .++.+.++++.+++||+++||| |+++++++++ ||||+|||+|.+
T Consensus 132 a~~~~~~g~d~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~iPVia~GGI~t~~d~~~~~~~GAdgV~iGsAi~r 209 (222)
T d1y0ea_ 132 AKNAARLGFDYIGTTLHGYTSYTQGQLLYQNDFQFLKDVLQSVDAKVIAEGNVITPDMYKRVMDLGVHCSVVGGAITR 209 (222)
T ss_dssp HHHHHHTTCSEEECTTTTSSTTSTTCCTTHHHHHHHHHHHHHCCSEEEEESSCCSHHHHHHHHHTTCSEEEECHHHHC
T ss_pred HHHHHHcCCCeEEEeccCCcccccCccchhhHHHHHHHHHhcCCCcEEEeCCCCCHHHHHHHHHcCCCEEEEchhhcC
Confidence 444555789998875431 1 1111 2467888888999999999999 7999999997 999999999865
|
| >d1yxya1 c.1.2.5 (A:4-233) Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: NanE-like domain: Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE species: Streptococcus pyogenes [TaxId: 1314]
Probab=98.72 E-value=1.9e-08 Score=83.41 Aligned_cols=70 Identities=7% Similarity=0.065 Sum_probs=53.2
Q ss_pred HHHHHHhhhccccEEEecCCCCCC-----CCCHHHHHHHHhcCCCCEEEecCC-ChHhHHHhhc--CCEEEEeceEee
Q psy9039 176 TETAKAASFFLSDGLIITGNATGD-----PADVSQLMSVKNAVDLPILIGSGV-TSDNVEHYMT--ADALIIGSHFKQ 245 (251)
Q Consensus 176 ~~~a~~a~~~~~D~v~VTG~~~g~-----~~~~~~l~~vr~~~~~PV~vG~GI-~~~~v~~~~~--ADGvIVGS~~~~ 245 (251)
.+.++.+...|+|.+++++..... ......+.++++..++||+++||| |++++.+++. ||||+|||+|.+
T Consensus 140 ~~~a~~a~~~Gad~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipvia~GGI~t~~d~~~al~~GAd~V~vGsAi~~ 217 (230)
T d1yxya1 140 FDEGLVAHQAGIDFVGTTLSGYTPYSRQEAGPDVALIEALCKAGIAVIAEGKIHSPEEAKKINDLGVAGIVVGGAITR 217 (230)
T ss_dssp HHHHHHHHHTTCSEEECTTTTSSTTSCCSSSCCHHHHHHHHHTTCCEEEESCCCSHHHHHHHHTTCCSEEEECHHHHC
T ss_pred HHHHHHHHhcCCCEEEeecccccccccccchHHHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHHcCCCEEEEChhhcC
Confidence 345566677899999888753321 222344666667789999999999 7999999987 999999999864
|
| >d1xi3a_ c.1.3.1 (A:) Thiamin phosphate synthase {Archaeon (Pyrococcus furiosus) [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Thiamin phosphate synthase family: Thiamin phosphate synthase domain: Thiamin phosphate synthase species: Archaeon (Pyrococcus furiosus) [TaxId: 2261]
Probab=98.62 E-value=2.3e-07 Score=76.44 Aligned_cols=155 Identities=15% Similarity=0.155 Sum_probs=91.6
Q ss_pred CCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHHHHHHHHcCccceecc
Q psy9039 43 PPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQAAGLDFIRAE 122 (251)
Q Consensus 43 ~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g~~Fir~~ 122 (251)
+.+.++|+ +.|.+ ..+....... ......++++-+... +|+.+| +. ..+|...+++.++..
T Consensus 24 ~~~l~~Gv-~~vql--------R~k~~~~~e~-~~~a~~l~~i~~~~~--~~liin----d~---~~lA~~~~adGvHl~ 84 (206)
T d1xi3a_ 24 REALEGGA-TAIQM--------RIKNAPTREM-YEIGKTLRQLTREYD--ALFFVD----DR---VDVALAVDADGVQLG 84 (206)
T ss_dssp HHHHHTTC-SEEEE--------CCCSCCHHHH-HHHHHHHHHHHHHTT--CEEEEE----SC---HHHHHHHTCSEEEEC
T ss_pred HHHHHcCC-CEEEE--------cCCCCCHHHH-HHHHHHHHHHHHHcC--CeEEec----hh---HHHHHhccCceEeec
Confidence 44567899 99873 2221122222 222333444444555 576665 42 456666677777642
Q ss_pred cccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHhhccCCCCCCcccHHHHHHHhhhccccEEEec-----CCCC
Q psy9039 123 SFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSSHAITADVDITETAKAASFFLSDGLIIT-----GNAT 197 (251)
Q Consensus 123 ~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~~~~~D~v~VT-----G~~~ 197 (251)
.. + .....++.++.+.+ +.+ +.+ +.++ +..+...++|+++++ -++.
T Consensus 85 --------~~-----~--~~~~~~~~~~~~~i-ig~------s~h------~~~e-~~~a~~~g~DYi~~gpvf~T~tk~ 135 (206)
T d1xi3a_ 85 --------PE-----D--MPIEVAKEIAPNLI-IGA------SVY------SLEE-ALEAEKKGADYLGAGSVFPTKTKE 135 (206)
T ss_dssp --------TT-----S--CCHHHHHHHCTTSE-EEE------EES------SHHH-HHHHHHHTCSEEEEECSSCC----
T ss_pred --------cc-----c--ccHhhhhhcccccc-ccc------ccC------CHHH-HHHHHhcCCCEEEecccccccccc
Confidence 11 1 12234455554222 211 111 3333 455555688988764 3344
Q ss_pred CCCC-CHHHHHHHHhcCCCCEEEecCCChHhHHHhhc--CCEEEEeceEee
Q psy9039 198 GDPA-DVSQLMSVKNAVDLPILIGSGVTSDNVEHYMT--ADALIIGSHFKQ 245 (251)
Q Consensus 198 g~~~-~~~~l~~vr~~~~~PV~vG~GI~~~~v~~~~~--ADGvIVGS~~~~ 245 (251)
+..+ .++.++++++.+++||++-||||++|+.+++. |||+.|.|+|..
T Consensus 136 ~~~~~g~~~l~~~~~~~~~Pv~AiGGI~~~ni~~~~~~Ga~gvAvis~I~~ 186 (206)
T d1xi3a_ 136 DARVIGLEGLRKIVESVKIPVVAIGGINKDNAREVLKTGVDGIAVISAVMG 186 (206)
T ss_dssp CCCCCHHHHHHHHHHHCSSCEEEESSCCTTTHHHHHTTTCSEEEESHHHHT
T ss_pred ccccccHHHHHHHHHhcCCCEEEECCCCHHHHHHHHHhCCCEEEEhHHHHC
Confidence 4333 46889999988999999999999999999996 999999998864
|
| >d1h5ya_ c.1.2.1 (A:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=98.22 E-value=1.3e-06 Score=74.01 Aligned_cols=179 Identities=16% Similarity=0.189 Sum_probs=114.6
Q ss_pred CCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHHHHHHHHcCccceecc
Q psy9039 43 PPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQAAGLDFIRAE 122 (251)
Q Consensus 43 ~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g~~Fir~~ 122 (251)
+.+.+.|+ |-+.|-+..+.....+ ....+++++.+... .|+-+-.=... .+...-....|++-+-.+
T Consensus 39 ~~~~~~ga-dei~ivDl~~~~~~~~---------~~~~~i~~i~~~~~--~pi~~gGGIr~-~e~~~~ll~~G~~kVii~ 105 (252)
T d1h5ya_ 39 VRYEEEGA-DEIAILDITAAPEGRA---------TFIDSVKRVAEAVS--IPVLVGGGVRS-LEDATTLFRAGADKVSVN 105 (252)
T ss_dssp HHHHHTTC-SCEEEEECCCCTTTHH---------HHHHHHHHHHHHCS--SCEEEESSCCS-HHHHHHHHHHTCSEEEES
T ss_pred HHHHHCCC-CEEEEEeccccccccc---------cHHHHHHHHHhhcC--Ccceeecccch-hhhhhhHhhcCCcEEEec
Confidence 66778999 9998877665532211 13456777777777 79877765554 444454455666655542
Q ss_pred cccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHh--------hccCCCCCCcccHHHHHHHhhhccccEEEecC
Q psy9039 123 SFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKK--------KHSSHAITADVDITETAKAASFFLSDGLIITG 194 (251)
Q Consensus 123 ~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~--------k~~~~~~~~~~~i~~~a~~a~~~~~D~v~VTG 194 (251)
. ....+...+.+..+.+|...+-+--|+.. .|+... ....++.+.++....+++..+++|-
T Consensus 106 s----------~~~~~~~~~~~~~~~~G~q~iv~slD~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~g~~eii~td 174 (252)
T d1h5ya_ 106 T----------AAVRNPQLVALLAREFGSQSTVVAIDAKWNGEYYEVYVKGGRE-ATGLDAVKWAKEVEELGAGEILLTS 174 (252)
T ss_dssp H----------HHHHCTHHHHHHHHHHCGGGEEEEEEEEECSSSEEEEETTTTE-EEEEEHHHHHHHHHHHTCSEEEEEE
T ss_pred c----------cccCCcchHHHHHHhcCCCcEEEEEEEEEcCCcEEEEEeCCeE-cCCCCHHHHHHHHHhcCCCEEEEEe
Confidence 1 12224555666777777543322112210 112111 1224566777776778999999985
Q ss_pred CCC-C--CCCCHHHHHHHHhcCCCCEEEecCC-ChHhHHHhhc--CCEEEEeceEee
Q psy9039 195 NAT-G--DPADVSQLMSVKNAVDLPILIGSGV-TSDNVEHYMT--ADALIIGSHFKQ 245 (251)
Q Consensus 195 ~~~-g--~~~~~~~l~~vr~~~~~PV~vG~GI-~~~~v~~~~~--ADGvIVGS~~~~ 245 (251)
-.. | ...+.+.++++++.+++|++++||+ +.+++.++.. ++|+++||+|..
T Consensus 175 I~~dG~~~G~d~~~~~~i~~~~~~pii~~GGv~~~~di~~l~~~g~~gv~~gs~l~~ 231 (252)
T d1h5ya_ 175 IDRDGTGLGYDVELIRRVADSVRIPVIASGGAGRVEHFYEAAAAGADAVLAASLFHF 231 (252)
T ss_dssp TTTTTTCSCCCHHHHHHHHHHCSSCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHT
T ss_pred ecccCccCCcCHHHHHHHHHhcCCCEEEecCCCCHHHHHHHHHCCCCEEEEhhHHHc
Confidence 322 2 2346889999999999999999999 5799998885 999999999844
|
| >d2tpsa_ c.1.3.1 (A:) Thiamin phosphate synthase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Thiamin phosphate synthase family: Thiamin phosphate synthase domain: Thiamin phosphate synthase species: Bacillus subtilis [TaxId: 1423]
Probab=98.18 E-value=1.7e-05 Score=66.02 Aligned_cols=157 Identities=20% Similarity=0.130 Sum_probs=90.8
Q ss_pred CCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHHHHHHHHcCccceeccc
Q psy9039 44 PSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQAAGLDFIRAES 123 (251)
Q Consensus 44 ~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g~~Fir~~~ 123 (251)
...++|+ +.|.+- .+-.+. ..........+.++++-+... +++.|| +. +.+|...+++.++..
T Consensus 38 ~al~~Gv-~~iqlR----~K~~~~--~~~~~~~~~a~~l~~lc~~~~--~~liIn---d~----~~lA~~~~adGvHl~- 100 (226)
T d2tpsa_ 38 KALKGGA-TLYQFR----EKGGDA--LTGEARIKFAEKAQAACREAG--VPFIVN---DD----VELALNLKADGIHIG- 100 (226)
T ss_dssp HHHHHTC-SEEEEC----CCSTTC--CCHHHHHHHHHHHHHHHHHHT--CCEEEE---SC----HHHHHHHTCSEEEEC-
T ss_pred HHHHCCC-CEEEEc----CCCccc--hhHHHHHHHHHHHHHHHHHhC--CeEEEc---CC----HHHHhhccCCEEEec-
Confidence 3445799 999742 111111 111222222233344444445 576666 33 466667777777742
Q ss_pred ccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHhhccCCCCCCcccHHHHHHHhhhccccEEEecC-----CCCC
Q psy9039 124 FVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSSHAITADVDITETAKAASFFLSDGLIITG-----NATG 198 (251)
Q Consensus 124 ~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~~~~~D~v~VTG-----~~~g 198 (251)
. +.......|+.++. .+ +.. +.+ +.++ ++.|...++|+++++= ++.+
T Consensus 101 -------~------~d~~~~~~r~~~~~-~i-ig~------S~h------~~~e-~~~a~~~g~DYi~~gpvf~T~sK~~ 152 (226)
T d2tpsa_ 101 -------Q------EDANAKEVRAAIGD-MI-LGV------SAH------TMSE-VKQAEEDGADYVGLGPIYPTETKKD 152 (226)
T ss_dssp -------T------TSSCHHHHHHHHTT-SE-EEE------EEC------SHHH-HHHHHHHTCSEEEECCSSCCCSSSS
T ss_pred -------c------ccchhhhhhhcccc-ee-eee------ecc------chHH-HHHHHhCcCCeEEEecccccccccc
Confidence 1 11234555666663 22 211 112 3333 3455556899987743 3333
Q ss_pred CCC--CHHHHHHHHh-cCCCCEEEecCCChHhHHHhhc--CCEEEEeceEee
Q psy9039 199 DPA--DVSQLMSVKN-AVDLPILIGSGVTSDNVEHYMT--ADALIIGSHFKQ 245 (251)
Q Consensus 199 ~~~--~~~~l~~vr~-~~~~PV~vG~GI~~~~v~~~~~--ADGvIVGS~~~~ 245 (251)
..+ ..+.++.+++ .+++||++-||||++|+.++.. +||+.|.|++..
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~Pv~AiGGI~~~ni~~l~~~Ga~giAvis~I~~ 204 (226)
T d2tpsa_ 153 TRAVQGVSLIEAVRRQGISIPIVGIGGITIDNAAPVIQAGADGVSMISAISQ 204 (226)
T ss_dssp CCCCCTTHHHHHHHHTTCCCCEEEESSCCTTTSHHHHHTTCSEEEESHHHHT
T ss_pred cccccccchhHHHHHhcCCCCEEEecCCCHHHHHHHHHhCCCEEEEhHHhhc
Confidence 322 3467777764 5799999999999999999986 999999998865
|
| >d1thfd_ c.1.2.1 (D:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Thermotoga maritima [TaxId: 2336]
Probab=98.09 E-value=4e-06 Score=70.93 Aligned_cols=179 Identities=15% Similarity=0.168 Sum_probs=113.0
Q ss_pred CCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHHHHHHHHcCccceecc
Q psy9039 43 PPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQAAGLDFIRAE 122 (251)
Q Consensus 43 ~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g~~Fir~~ 122 (251)
+.+.+.|+ |-+.+-+..+.-. +.. ....+++++.+... +|+-+-.=... .....-....|++-+-.+
T Consensus 37 ~~~~~~g~-dei~ivDld~~~~------~~~---~~~~~i~~i~~~~~--~pi~vgGGIr~-~e~i~~~l~~Ga~kviig 103 (253)
T d1thfd_ 37 KFYSEIGI-DELVFLDITASVE------KRK---TMLELVEKVAEQID--IPFTVGGGIHD-FETASELILRGADKVSIN 103 (253)
T ss_dssp HHHHHTTC-CEEEEEESSCSSS------HHH---HHHHHHHHHHTTCC--SCEEEESSCCS-HHHHHHHHHTTCSEEEES
T ss_pred HHHHHcCC-CEEEEEeeccccc------Ccc---cHHHHHHHHHhccC--ccceeeccccc-chhhhhHHhcCCCEEEEC
Confidence 56778899 9999866554311 111 13457788888777 78777654444 444444455565554432
Q ss_pred cccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHh--------hccCCCCCCcccHHHHHHHhhhccccEEEecC
Q psy9039 123 SFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKK--------KHSSHAITADVDITETAKAASFFLSDGLIITG 194 (251)
Q Consensus 123 ~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~--------k~~~~~~~~~~~i~~~a~~a~~~~~D~v~VTG 194 (251)
. ....+...+.+..+++|...+-+.-++.. .++... .....+.+.......+++.-+++|-
T Consensus 104 s----------~~~~n~~~l~~~~~~~G~~~iv~~id~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~eii~td 172 (253)
T d1thfd_ 104 T----------AAVENPSLITQIAQTFGSQAVVVAIDAKRVDGEFMVFTYSGKK-NTGILLRDWVVEVEKRGAGEILLTS 172 (253)
T ss_dssp H----------HHHHCTHHHHHHHHHHCGGGEEEEEEEEEETTEEEEEETTTTE-EEEEEHHHHHHHHHHTTCSEEEEEE
T ss_pred h----------HHhhChHHHHHHHHHcCCeeEEEeeeecccCCceeeeeeeccc-ccchhHHHHHHHHHhccCCEEEEEE
Confidence 1 11224556677777777533322212110 011110 1224456666666667999998887
Q ss_pred CCC-C--CCCCHHHHHHHHhcCCCCEEEecCC-ChHhHHHhhc--CCEEEEeceEee
Q psy9039 195 NAT-G--DPADVSQLMSVKNAVDLPILIGSGV-TSDNVEHYMT--ADALIIGSHFKQ 245 (251)
Q Consensus 195 ~~~-g--~~~~~~~l~~vr~~~~~PV~vG~GI-~~~~v~~~~~--ADGvIVGS~~~~ 245 (251)
-.. | ...+.+.++++++.+++|++++||+ +.+++.+++. ++|+++||+|..
T Consensus 173 I~~dGt~~G~d~~ll~~i~~~~~~pvi~~GGv~s~~di~~l~~~g~~gvivgsal~~ 229 (253)
T d1thfd_ 173 IDRDGTKSGYDTEMIRFVRPLTTLPIIASGGAGKMEHFLEAFLAGADAALAASVFHF 229 (253)
T ss_dssp TTTTTSCSCCCHHHHHHHGGGCCSCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHT
T ss_pred ecccCccCCccccccccccccccceEEEecCCCCHHHHHHHHHCCCCEEEEchHHHc
Confidence 433 2 2457899999999999999999999 5899999885 999999999844
|
| >d1wa3a1 c.1.10.1 (A:2-203) KDPG aldolase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: KDPG aldolase species: Thermotoga maritima [TaxId: 2336]
Probab=98.08 E-value=1.1e-06 Score=72.47 Aligned_cols=155 Identities=15% Similarity=0.176 Sum_probs=101.8
Q ss_pred HhhCCCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhC-CCCccEEEEEeeCChHHHHHHHHHcCcc
Q psy9039 39 RKVLPPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVL-PPSVPVGVQILSGCNKAALATAQAAGLD 117 (251)
Q Consensus 39 ~~~a~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~-~~~~P~Gvn~~~N~~~~~~~ia~a~g~~ 117 (251)
++-+++|.++|+ +.+|| +|+.|. ....++++++.. ++ .-+|+-+..| ..++..|...|++
T Consensus 24 ~~~~~al~~~Gi-~~iEi------tlr~p~---------a~~~i~~l~~~~~~~-~~vGaGTV~~--~~~~~~a~~aGa~ 84 (202)
T d1wa3a1 24 KEKALAVFEGGV-HLIEI------TFTVPD---------ADTVIKELSFLKEKG-AIIGAGTVTS--VEQCRKAVESGAE 84 (202)
T ss_dssp HHHHHHHHHTTC-CEEEE------ETTSTT---------HHHHHHHTHHHHHTT-CEEEEESCCS--HHHHHHHHHHTCS
T ss_pred HHHHHHHHHcCC-CEEEE------ecCCcc---------HHHHHHHHHHhcCCC-cEEEeccccc--HHHHHHHHhhccc
Confidence 333478899999 99987 565552 233445555432 32 4689888886 4677778889999
Q ss_pred ceecccccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHhhccCCCCCCcccHHHHHHHhhhccccEEEecCCCC
Q psy9039 118 FIRAESFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSSHAITADVDITETAKAASFFLSDGLIITGNAT 197 (251)
Q Consensus 118 Fir~~~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~~~~~D~v~VTG~~~ 197 (251)
|+=.. | + ..++.+++.+.+. .++ +.......+..|..+|+|.+=+==...
T Consensus 85 fivsP----------~-~---~~~v~~~~~~~~i---~~i-------------PGv~TpsEi~~A~~~G~~~lK~fPa~~ 134 (202)
T d1wa3a1 85 FIVSP----------H-L---DEEISQFCKEKGV---FYM-------------PGVMTPTELVKAMKLGHTILKLFPGEV 134 (202)
T ss_dssp EEECS----------S-C---CHHHHHHHHHHTC---EEE-------------CEECSHHHHHHHHHTTCCEEEETTHHH
T ss_pred EEeCC----------C-C---cHHHHHHHHhcCC---cee-------------CCcCcHHHHHHHHHCCCCEEEecchhh
Confidence 96421 1 1 2456667766554 222 112222334555567888875411111
Q ss_pred CCCCCHHHHHHHHhcC-CCCEEEecCCChHhHHHhhc--CCEEEEeceEee
Q psy9039 198 GDPADVSQLMSVKNAV-DLPILIGSGVTSDNVEHYMT--ADALIIGSHFKQ 245 (251)
Q Consensus 198 g~~~~~~~l~~vr~~~-~~PV~vG~GI~~~~v~~~~~--ADGvIVGS~~~~ 245 (251)
. ....++.++.-. ++|++.-|||+.+|+.++++ +.++.+||++.+
T Consensus 135 ~---G~~~lk~l~~p~p~i~~iptGGI~~~n~~~~l~aga~avg~Gs~l~~ 182 (202)
T d1wa3a1 135 V---GPQFVKAMKGPFPNVKFVPTGGVNLDNVCEWFKAGVLAVGVGSALVK 182 (202)
T ss_dssp H---HHHHHHHHHTTCTTCEEEEBSSCCTTTHHHHHHHTCSCEEECHHHHC
T ss_pred c---CHHHHHHHhCcccCCcEEeeCCCCHHHHHHHHHCCCeEEEEchhhcC
Confidence 0 135788887765 79999999999999999997 999999999975
|
| >d1wbha1 c.1.10.1 (A:1-213) KDPG aldolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: KDPG aldolase species: Escherichia coli [TaxId: 562]
Probab=98.07 E-value=5.2e-06 Score=68.81 Aligned_cols=152 Identities=18% Similarity=0.192 Sum_probs=107.4
Q ss_pred CCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHHHHHHHHcCccceecc
Q psy9039 43 PPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQAAGLDFIRAE 122 (251)
Q Consensus 43 ~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g~~Fir~~ 122 (251)
++|.++|+ ..+|| +++.|. ..+.++++++++++. -+|+=+..+ ..++..+...|++|+=..
T Consensus 34 ~al~~~Gi-~~iEi------tl~tp~---------a~~~I~~l~~~~p~~-~vGaGTV~~--~~~~~~a~~aGa~FivSP 94 (213)
T d1wbha1 34 KALVAGGV-RVLNV------TLRTEC---------AVDAIRAIAKEVPEA-IVGAGTVLN--PQQLAEVTEAGAQFAISP 94 (213)
T ss_dssp HHHHHTTC-CEEEE------ESCSTT---------HHHHHHHHHHHCTTS-EEEEESCCS--HHHHHHHHHHTCSCEEES
T ss_pred HHHHHCCC-CEEEE------eCCChh---------HHHHHHHHHHHCCCC-eeecccccc--HHHHHHHHHCCCcEEECC
Confidence 77999999 99987 666552 356778888887764 799999887 567888888999996632
Q ss_pred cccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHhhccCCCCCCcccHHHHHHHhhhccccEEEecCCCCCCCCC
Q psy9039 123 SFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSSHAITADVDITETAKAASFFLSDGLIITGNATGDPAD 202 (251)
Q Consensus 123 ~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~~~~~D~v~VTG~~~g~~~~ 202 (251)
| -..++.+++++.+. .++ +.......+..|..+|++.+=+==.. ....
T Consensus 95 ----------~----~~~~v~~~a~~~~i---~~i-------------PGv~TpsEi~~A~~~G~~~vKlFPA~--~~Gg 142 (213)
T d1wbha1 95 ----------G----LTEPLLKAATEGTI---PLI-------------PGISTVSELMLGMDYGLKEFKFFPAE--ANGG 142 (213)
T ss_dssp ----------S----CCHHHHHHHHHSSS---CEE-------------EEESSHHHHHHHHHTTCCEEEETTTT--TTTH
T ss_pred ----------C----CCHHHHHHHHhcCC---Ccc-------------CCcCCHHHHHHHHHCCCCEEEeccch--hcCh
Confidence 1 13457777777654 221 12222333456666788887442111 1112
Q ss_pred HHHHHHHHhcC-CCCEEEecCCChHhHHHhhc--CCEEEEeceEee
Q psy9039 203 VSQLMSVKNAV-DLPILIGSGVTSDNVEHYMT--ADALIIGSHFKQ 245 (251)
Q Consensus 203 ~~~l~~vr~~~-~~PV~vG~GI~~~~v~~~~~--ADGvIVGS~~~~ 245 (251)
...++.++.-. +++++.-|||+.+|+.++++ +.++..||++..
T Consensus 143 ~~~lkal~~p~p~~~~~ptGGV~~~n~~~yl~~g~v~~~~Gs~l~~ 188 (213)
T d1wbha1 143 VKALQAIAGPFSQVRFCPTGGISPANYRDYLALKSVLCIGGSWLVP 188 (213)
T ss_dssp HHHHHHHHTTCTTCEEEEBSSCCTTTHHHHHTSTTBSCEEEGGGSC
T ss_pred HHHHHHhcCcccCCceeeeCCCCHHHHHHHHhCCCEEEEEChhhCC
Confidence 56788888765 79999999999999999997 889999998863
|
| >d1vhca_ c.1.10.1 (A:) Hypothetical protein HI0047 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Hypothetical protein HI0047 species: Haemophilus influenzae [TaxId: 727]
Probab=98.05 E-value=7.3e-06 Score=67.84 Aligned_cols=151 Identities=15% Similarity=0.183 Sum_probs=106.4
Q ss_pred CCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHHHHHHHHcCccceecc
Q psy9039 43 PPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQAAGLDFIRAE 122 (251)
Q Consensus 43 ~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g~~Fir~~ 122 (251)
++|.++|+ ..+|| +++.|. ..+.++++++..++ .-+|+=+..+ ..+...+...|++|+=..
T Consensus 33 ~al~~~Gi-~~iEi------tl~~~~---------a~~~I~~l~~~~p~-~~vGaGTV~~--~~~~~~a~~aGa~FivSP 93 (212)
T d1vhca_ 33 DTLAKNGL-SVAEI------TFRSEA---------AADAIRLLRANRPD-FLIAAGTVLT--AEQVVLAKSSGADFVVTP 93 (212)
T ss_dssp HHHHHTTC-CEEEE------ETTSTT---------HHHHHHHHHHHCTT-CEEEEESCCS--HHHHHHHHHHTCSEEECS
T ss_pred HHHHHCCC-CEEEE------eCCChh---------HHHHHHHHHhcCCC-ceEeeeeccc--HHHHHHHHhhCCcEEECC
Confidence 77899999 99987 555542 24567888888776 4899999887 467777788999996632
Q ss_pred cccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHhhccCCCCCCcccHHHHHHHhhhccccEEEecCCCCCCCCC
Q psy9039 123 SFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSSHAITADVDITETAKAASFFLSDGLIITGNATGDPAD 202 (251)
Q Consensus 123 ~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~~~~~D~v~VTG~~~g~~~~ 202 (251)
| + ..++.+++++.+. +. .+.......+..|..+|+|.+=+==.. ....
T Consensus 94 ----------~-~---~~~v~~~a~~~~i---------------~~-iPGv~TpsEi~~A~~~G~~~vK~FPA~--~~gG 141 (212)
T d1vhca_ 94 ----------G-L---NPKIVKLCQDLNF---------------PI-TPGVNNPMAIEIALEMGISAVKFFPAE--ASGG 141 (212)
T ss_dssp ----------S-C---CHHHHHHHHHTTC---------------CE-ECEECSHHHHHHHHHTTCCEEEETTTT--TTTH
T ss_pred ----------C-C---CHHHHHHHHhcCC---------------Cc-cCCcCCHHHHHHHHHCCCCEEEEcccc--ccch
Confidence 1 1 3457777777654 22 122222333466666788887542211 1113
Q ss_pred HHHHHHHHhcC-CCCEEEecCCChHhHHHhhc--CCEEEEeceEe
Q psy9039 203 VSQLMSVKNAV-DLPILIGSGVTSDNVEHYMT--ADALIIGSHFK 244 (251)
Q Consensus 203 ~~~l~~vr~~~-~~PV~vG~GI~~~~v~~~~~--ADGvIVGS~~~ 244 (251)
...++.++.-. ++|++.-|||+.+|+.++++ +.++..||+|.
T Consensus 142 ~~~lkal~~p~p~~~~~ptGGV~~~N~~~yl~~g~v~~~~Gs~l~ 186 (212)
T d1vhca_ 142 VKMIKALLGPYAQLQIMPTGGIGLHNIRDYLAIPNIVACGGSWFV 186 (212)
T ss_dssp HHHHHHHHTTTTTCEEEEBSSCCTTTHHHHHTSTTBCCEEECGGG
T ss_pred HHHHHHHhccccCCeEEecCCCCHHHHHHHHhCCCEEEEEChhhC
Confidence 57788888765 79999999999999999997 78899999876
|
| >d1ep3a_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Lactococcus lactis, isozyme B [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydroorotate dehydrogenase species: Lactococcus lactis, isozyme B [TaxId: 1358]
Probab=98.04 E-value=1.1e-05 Score=69.26 Aligned_cols=158 Identities=21% Similarity=0.254 Sum_probs=90.3
Q ss_pred HHHHHHHHHhCCCCccEEEEEeeCChHHHHHHHHH----cCccceecccccccccCCCceeecC---cchhHHHHHhcCC
Q psy9039 79 TRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQA----AGLDFIRAESFVFGHMADEGLMNAQ---AGPLLRYRKQIGA 151 (251)
Q Consensus 79 ~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a----~g~~Fir~~~~~~~~~~~~Gli~~d---a~e~~~~r~~l~~ 151 (251)
.+..+.+++..++ .|+++++..+........+.. .|++++..|..|-...........+ ..++....+...
T Consensus 86 ~~~~~~~~~~~~~-~pii~si~~~~~~~~~~~~~~~~~~~g~d~ielN~~cP~~~~~~~~~~~~~~~~~~~~~~v~~~~- 163 (311)
T d1ep3a_ 86 TEKLPWLNENFPE-LPIIANVAGSEEADYVAVCAKIGDAANVKAIELNISCPNVKHGGQAFGTDPEVAAALVKACKAVS- 163 (311)
T ss_dssp HTHHHHHHHHCTT-SCEEEEECCSSHHHHHHHHHHHTTSTTEEEEEEECCSEEGGGTTEEGGGCHHHHHHHHHHHHHHC-
T ss_pred hhhhhhhhcccCC-CcccccccchhhhHHHHHHHHHhhcccccccccccCCCcccccccccccCHHHHHHHHHHHHhcc-
Confidence 3344555555444 599999988764322333322 3567777765544322221222222 112222222221
Q ss_pred CcchhhhhhHhhccCCCCCCcccHHHHHHHhhhccccEEEecCCCCCC------------------------CCCHHHHH
Q psy9039 152 DNVLVFTDIKKKHSSHAITADVDITETAKAASFFLSDGLIITGNATGD------------------------PADVSQLM 207 (251)
Q Consensus 152 ~~i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~~~~~D~v~VTG~~~g~------------------------~~~~~~l~ 207 (251)
.+.++ .|.+.. . ....++++.+...++|++++.+..... +..++.+.
T Consensus 164 -~~p~~----vkl~~~--~--~~~~~~a~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~sG~~i~~~~l~~i~ 234 (311)
T d1ep3a_ 164 -KVPLY----VKLSPN--V--TDIVPIAKAVEAAGADGLTMINTLMGVRFDLKTRQPILANITGGLSGPAIKPVALKLIH 234 (311)
T ss_dssp -SSCEE----EEECSC--S--SCSHHHHHHHHHTTCSEEEECCCEEECCBCTTTCSBSSTTSCEEEESGGGHHHHHHHHH
T ss_pred -CCCee----eeeccc--c--cchHHHHHHHHHhhhheeEEEeeccccccccccccccccccCCCCCCCcccchhHHHHH
Confidence 12221 122211 1 123456666666788888876531110 01256788
Q ss_pred HHHhcCCCCEEEecCC-ChHhHHHhhc--CCEEEEeceEeecC
Q psy9039 208 SVKNAVDLPILIGSGV-TSDNVEHYMT--ADALIIGSHFKQGG 247 (251)
Q Consensus 208 ~vr~~~~~PV~vG~GI-~~~~v~~~~~--ADGvIVGS~~~~~g 247 (251)
++++.+++||+..||| |++++.+++. ||+|.+||++..++
T Consensus 235 ~i~~~~~ipIig~GGI~s~~Da~~~i~~GAd~V~ig~~~~~~P 277 (311)
T d1ep3a_ 235 QVAQDVDIPIIGMGGVANAQDVLEMYMAGASAVAVGTANFADP 277 (311)
T ss_dssp HHHTTCSSCEEECSSCCSHHHHHHHHHHTCSEEEECTHHHHCT
T ss_pred HHhhhcceeEEEeCCcCCHHHHHHHHHcCCCEEEecHHHHcCC
Confidence 9999999999999999 7899888885 99999999988765
|
| >d1vzwa1 c.1.2.1 (A:2-240) Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA species: Streptomyces coelicolor [TaxId: 1902]
Probab=98.02 E-value=3.5e-06 Score=70.63 Aligned_cols=179 Identities=16% Similarity=0.140 Sum_probs=104.0
Q ss_pred CCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHHHHHHHHcCccceecc
Q psy9039 43 PPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQAAGLDFIRAE 122 (251)
Q Consensus 43 ~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g~~Fir~~ 122 (251)
+.+.+.|+ |-|.|.+.... ...+. ...+++++.+... +|+-+-.=... .....-....|++.+-.+
T Consensus 38 ~~~~~~ga-~~l~i~DLd~~-~~~~~---------~~~~i~~i~~~~~--~pi~vGGGIrs-~~~~~~ll~~Ga~kVvi~ 103 (239)
T d1vzwa1 38 LAWQRSGA-EWLHLVDLDAA-FGTGD---------NRALIAEVAQAMD--IKVELSGGIRD-DDTLAAALATGCTRVNLG 103 (239)
T ss_dssp HHHHHTTC-SEEEEEEHHHH-HTSCC---------CHHHHHHHHHHCS--SEEEEESSCCS-HHHHHHHHHTTCSEEEEC
T ss_pred HHHHHcCC-CEEEEEeeccc-ccccc---------hHHHHHHHHhhcC--cceEeeccccc-chhhhhhhccccccchhh
Confidence 55778899 99998765433 22221 1245667777777 68766644333 444444445666655542
Q ss_pred cccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHhh----ccCCCCCCcccHHHHHHHhhhccccEEEecCCCC-
Q psy9039 123 SFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKK----HSSHAITADVDITETAKAASFFLSDGLIITGNAT- 197 (251)
Q Consensus 123 ~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~k----~~~~~~~~~~~i~~~a~~a~~~~~D~v~VTG~~~- 197 (251)
. ....+...+.+..+.++. .+-+-.|...+ ++.. .......+..+.....++..+++|--..
T Consensus 104 s----------~~~~~~~~~~~~~~~~g~-~~vv~~d~~~~~~~~~g~~--~~~~~~~~~~~~~~~~g~~eii~tdi~~d 170 (239)
T d1vzwa1 104 T----------AALETPEWVAKVIAEHGD-KIAVGLDVRGTTLRGRGWT--RDGGDLYETLDRLNKEGCARYVVTDIAKD 170 (239)
T ss_dssp H----------HHHHCHHHHHHHHHHHGG-GEEEEEEEETTEECCSSSC--CCCCBHHHHHHHHHHTTCCCEEEEEC---
T ss_pred H----------HhhhccccchhhhccCCc-eeeeeeccceeeecCccce--eeccccchhhhhhhhccccEEEEEeeccc
Confidence 1 112233334445555553 22121122111 1211 2223444444544446888888885322
Q ss_pred --CCCCCHHHHHHHHhcCCCCEEEecCC-ChHhHHHh--h--c-CCEEEEeceEeecCee
Q psy9039 198 --GDPADVSQLMSVKNAVDLPILIGSGV-TSDNVEHY--M--T-ADALIIGSHFKQGGRT 249 (251)
Q Consensus 198 --g~~~~~~~l~~vr~~~~~PV~vG~GI-~~~~v~~~--~--~-ADGvIVGS~~~~~g~~ 249 (251)
...++.++++++++.+++|++++||| +.+++.++ + . +||++|||+| +.|++
T Consensus 171 Gt~~G~d~~l~~~i~~~~~~pvi~sGGv~s~~Di~~l~~l~~~g~~gvivg~al-~~g~i 229 (239)
T d1vzwa1 171 GTLQGPNLELLKNVCAATDRPVVASGGVSSLDDLRAIAGLVPAGVEGAIVGKAL-YAKAF 229 (239)
T ss_dssp ----CCCHHHHHHHHHTCSSCEEEESCCCSHHHHHHHHTTGGGTEEEEEECHHH-HTTSS
T ss_pred ceecCCcchhhhhhhhccCceEEEECCCCCHHHHHHHHhhhhCCccEeeEhHHH-HCCCC
Confidence 23457889999999999999999999 67888776 3 2 9999999998 55654
|
| >d1gtea2 c.1.4.1 (A:533-844) Dihydropyrimidine dehydrogenase, domain 4 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydropyrimidine dehydrogenase, domain 4 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.00 E-value=2e-05 Score=68.12 Aligned_cols=74 Identities=23% Similarity=0.359 Sum_probs=56.1
Q ss_pred cHHHHHHHhhhccccEEEecCCCCCC--------------------------C----CCHHHHHHHHhcC-CCCEEEecC
Q psy9039 174 DITETAKAASFFLSDGLIITGNATGD--------------------------P----ADVSQLMSVKNAV-DLPILIGSG 222 (251)
Q Consensus 174 ~i~~~a~~a~~~~~D~v~VTG~~~g~--------------------------~----~~~~~l~~vr~~~-~~PV~vG~G 222 (251)
...++++.+...++|++.+++...+. + ..++.++++++.. ++||+..||
T Consensus 184 ~~~~i~~~~~~~g~~gi~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~gg~sG~~i~~~al~~v~~~~~~~~~ipIi~~GG 263 (312)
T d1gtea2 184 DIVSIARAAKEGGADGVTATNTVSGLMGLKADGTPWPAVGAGKRTTYGGVSGTAIRPIALRAVTTIARALPGFPILATGG 263 (312)
T ss_dssp CHHHHHHHHHHHTCSEEEECCCEEECCCBCTTSCBSSCBTTTTBBCCEEEESGGGHHHHHHHHHHHHHHSTTCCEEEESS
T ss_pred hHHHHHHHHHHhcccceEEEeecccccccccccccccccccccccccccccCcCcchhhHHHHHHHHHHcCCCcEEEEcC
Confidence 45667777777799999876641100 0 0145678888877 699999999
Q ss_pred C-ChHhHHHhhc--CCEEEEeceEeecC
Q psy9039 223 V-TSDNVEHYMT--ADALIIGSHFKQGG 247 (251)
Q Consensus 223 I-~~~~v~~~~~--ADGvIVGS~~~~~g 247 (251)
| |.+++.+++. ||+|.|||+|+.+|
T Consensus 264 I~~~~d~~~~l~aGA~~Vqv~ta~~~~G 291 (312)
T d1gtea2 264 IDSAESGLQFLHSGASVLQVCSAVQNQD 291 (312)
T ss_dssp CCSHHHHHHHHHTTCSEEEESHHHHTSC
T ss_pred CCCHHHHHHHHHcCCCeeEECHhhhccC
Confidence 9 7999998885 99999999998876
|
| >d1a53a_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Indole-3-glycerophosphate synthase, IPGS species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=97.86 E-value=7.5e-05 Score=62.89 Aligned_cols=161 Identities=12% Similarity=0.150 Sum_probs=108.1
Q ss_pred CcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHHHHHHHHcCccceecccc
Q psy9039 45 SVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQAAGLDFIRAESF 124 (251)
Q Consensus 45 l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g~~Fir~~~~ 124 (251)
+.++|+ +++-|-.+- .|... ...-++++|+.++ +|+---=+.-+ .++...|.+.|++-+-.-+
T Consensus 71 ~~~~gA-~aiSVLTd~--~~F~G----------s~~dl~~v~~~~~--~PiLrKDFIid-~~QI~ea~~~GADaiLLI~- 133 (247)
T d1a53a_ 71 FMERYA-VGLSILTEE--KYFNG----------SYETLRKIASSVS--IPILMKDFIVK-ESQIDDAYNLGADTVLLIV- 133 (247)
T ss_dssp HHTTTC-SEEEEECCC--TTTCC----------CHHHHHHHHHHCC--SCEEEESCCCS-HHHHHHHHHHTCSEEEEEG-
T ss_pred HHHhCC-CeEEEecCc--ccccc----------chHHHHHHHhccc--cceeecccccC-hHHHHHHHHhhcchhhhhh-
Confidence 457899 998774322 33332 2345567788888 79776655555 6788888888888665421
Q ss_pred cccccCCCceee-cCcchhHHHHHhcCCCcchhhhhhHhhccCCCCCCcccHHHHHHHhhhccccEEEecCCCCC-CCCC
Q psy9039 125 VFGHMADEGLMN-AQAGPLLRYRKQIGADNVLVFTDIKKKHSSHAITADVDITETAKAASFFLSDGLIITGNATG-DPAD 202 (251)
Q Consensus 125 ~~~~~~~~Gli~-~da~e~~~~r~~l~~~~i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~~~~~D~v~VTG~~~g-~~~~ 202 (251)
.++. .+..++..+++.+|.+-+-.+ | .++.++.+...+++.++|....-. ...+
T Consensus 134 --------~~L~~~~l~~l~~~a~~lgl~~LvEv---------h-------~~~El~~a~~~~a~iIGINnRnL~t~~vd 189 (247)
T d1a53a_ 134 --------KILTERELESLLEYARSYGMEPLIEI---------N-------DENDLDIALRIGARFIGINSRDLETLEIN 189 (247)
T ss_dssp --------GGSCHHHHHHHHHHHHTTTCCCEEEE---------C-------SHHHHHHHHHTTCSEEEEESBCTTTCCBC
T ss_pred --------hhccHHHHHHHHHHHHHHhhhHHhhc---------C-------CHHHHHHHHhCCCCeEeeeccChhhhhhh
Confidence 1121 136778888888887433221 2 233445555568999999876432 3446
Q ss_pred HHHHHHHHhcC--CCCEEEecCC-ChHhHHHhhc--CCEEEEeceEeec
Q psy9039 203 VSQLMSVKNAV--DLPILIGSGV-TSDNVEHYMT--ADALIIGSHFKQG 246 (251)
Q Consensus 203 ~~~l~~vr~~~--~~PV~vG~GI-~~~~v~~~~~--ADGvIVGS~~~~~ 246 (251)
.+...++.+.. +.+++.=+|| +++++..+.. +||+.||++|++.
T Consensus 190 ~~~~~~L~~~ip~~~~~IaESGI~t~~dv~~l~~~G~davLIGeaLmk~ 238 (247)
T d1a53a_ 190 KENQRKLISMIPSNVVKVAESGISERNEIEELRKLGVNAFLIGSSLMRN 238 (247)
T ss_dssp HHHHHHHHHHSCTTSEEEEESCCCCHHHHHHHHHTTCCEEEECHHHHHC
T ss_pred hhHHHHHHhhCCCCCeEEEecCCCCHHHHHHHHHCCCCEEEECHHHcCC
Confidence 66655665554 6899999999 7999999875 9999999999874
|
| >d1h1ya_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Rice (Oryza sativa) [TaxId: 4530]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: D-ribulose-5-phosphate 3-epimerase domain: D-ribulose-5-phosphate 3-epimerase species: Rice (Oryza sativa) [TaxId: 4530]
Probab=97.83 E-value=3.4e-05 Score=63.92 Aligned_cols=173 Identities=13% Similarity=0.119 Sum_probs=102.8
Q ss_pred CCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHHHHHHHHcCccceecc
Q psy9039 43 PPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQAAGLDFIRAE 122 (251)
Q Consensus 43 ~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g~~Fir~~ 122 (251)
+.+.++|+ |.+.+==+-| =|.+...-||. .++++|+.++ .|+=+-++.+.+...+.--...|++-+-..
T Consensus 21 ~~l~~~~~-d~iHiDimDg-~Fvpn~t~~~~-------~i~~i~~~~~--~~~dvHLMv~~p~~~i~~~~~~g~~~I~~H 89 (220)
T d1h1ya_ 21 DRMVRLGA-DWLHMDIMDG-HFVPNLTIGAP-------VIQSLRKHTK--AYLDCHLMVTNPSDYVEPLAKAGASGFTFH 89 (220)
T ss_dssp HHHHHTTC-SEEEEEEEBS-SSSSCBCBCHH-------HHHHHHTTCC--SEEEEEEESSCGGGGHHHHHHHTCSEEEEE
T ss_pred HHHHHcCC-CEEEEeeecC-ccccccccCch-------hhhhhhhhcc--hhhhhHHHhcchhhhhHHhhhcccceeeec
Confidence 56778899 9887631222 24433344553 4566788777 799888888876444443334555544432
Q ss_pred cccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHhhccCCCCCCcccHHHHHHHhhh-ccccEEEecCCCCCCC-
Q psy9039 123 SFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSSHAITADVDITETAKAASF-FLSDGLIITGNATGDP- 200 (251)
Q Consensus 123 ~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~~-~~~D~v~VTG~~~g~~- 200 (251)
... ...+..++..+.++.+. ..-+. ++ | .|+...+... ... ..+|.+.+.+...|..
T Consensus 90 ~E~---------~~~~~~~~i~~i~~~g~-~~Gla--l~-----p-~t~~~~~~~~---l~~~~~~d~vlim~v~PG~~G 148 (220)
T d1h1ya_ 90 IEV---------SRDNWQELIQSIKAKGM-RPGVS--LR-----P-GTPVEEVFPL---VEAENPVELVLVMTVEPGFGG 148 (220)
T ss_dssp GGG---------CTTTHHHHHHHHHHTTC-EEEEE--EC-----T-TSCGGGGHHH---HHSSSCCSEEEEESSCTTCSS
T ss_pred ccc---------cchhHHHHHHHHHHcCC-Cccee--ec-----c-ccchhHHHHH---HhcccccceEEEEecCCCCcc
Confidence 110 01123345555566664 11111 11 1 1222222222 222 3588887776544432
Q ss_pred -----CCHHHHHHHHhcC-CCCEEEecCCChHhHHHhhc--CCEEEEeceEeecC
Q psy9039 201 -----ADVSQLMSVKNAV-DLPILIGSGVTSDNVEHYMT--ADALIIGSHFKQGG 247 (251)
Q Consensus 201 -----~~~~~l~~vr~~~-~~PV~vG~GI~~~~v~~~~~--ADGvIVGS~~~~~g 247 (251)
...++++++|+.. ++++.+=|||+.+|+..+.+ ||.+++||++....
T Consensus 149 Q~f~~~~l~kI~~l~~~~~~~~I~VDGGIn~~~i~~l~~aGad~~V~GS~if~~~ 203 (220)
T d1h1ya_ 149 QKFMPEMMEKVRALRKKYPSLDIEVDGGLGPSTIDVAASAGANCIVAGSSIFGAA 203 (220)
T ss_dssp CCCCGGGHHHHHHHHHHCTTSEEEEESSCSTTTHHHHHHHTCCEEEESHHHHTSS
T ss_pred cccchhhhHHHHHHHhcCCCceEEEEecCCHHHHHHHHHCCCCEEEECHHHHCCC
Confidence 2357788888754 79999999999999999996 99999999987644
|
| >d1ka9f_ c.1.2.1 (F:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Thermus thermophilus [TaxId: 274]
Probab=97.75 E-value=2.2e-05 Score=66.04 Aligned_cols=179 Identities=14% Similarity=0.150 Sum_probs=109.0
Q ss_pred CCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHHHHHHHHcCccceecc
Q psy9039 43 PPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQAAGLDFIRAE 122 (251)
Q Consensus 43 ~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g~~Fir~~ 122 (251)
+.+.+.|+ |-+.+....+.-...+ ....+++++.+.+. +|+-+-.=... .+...-....|++-+-.+
T Consensus 37 ~~~~~~g~-dei~iiDl~~~~~~~~---------~~~~~i~~i~~~~~--~pi~vgGGIrs-~e~~~~ll~~Ga~kVii~ 103 (251)
T d1ka9f_ 37 RAYDEAGA-DELVFLDISATHEERA---------ILLDVVARVAERVF--IPLTVGGGVRS-LEDARKLLLSGADKVSVN 103 (251)
T ss_dssp HHHHHHTC-SCEEEEECCSSTTCHH---------HHHHHHHHHHTTCC--SCEEEESSCCS-HHHHHHHHHHTCSEEEEC
T ss_pred HHHHHcCC-CEEEEEecccccccch---------hHHHHHHHHHhccC--cchheeccccC-HHHHHHHHHcCCCEEEEC
Confidence 55678899 9998866654432221 24567788888777 78866543333 333333344455554432
Q ss_pred cccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHh--------hccCCCCCCcccHHHHHHHhhhccccEEEecC
Q psy9039 123 SFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKK--------KHSSHAITADVDITETAKAASFFLSDGLIITG 194 (251)
Q Consensus 123 ~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~--------k~~~~~~~~~~~i~~~a~~a~~~~~D~v~VTG 194 (251)
. ....+...+....+.+|...+-.--++.. .|+... .++..+.+..+....+|+.-+++|-
T Consensus 104 s----------~~~~n~~~i~~~~~~~G~q~iv~~id~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~eii~td 172 (251)
T d1ka9f_ 104 S----------AAVRRPELIRELADHFGAQAVVLAIDARWRGDFPEVHVAGGRV-PTGLHAVEWAVKGVELGAGEILLTS 172 (251)
T ss_dssp H----------HHHHCTHHHHHHHHHHCGGGEEEEEEEEEETTEEEEEETTTTE-EEEEEHHHHHHHHHHHTCCEEEEEE
T ss_pred c----------hhhhCHHHHHHHHHhhcccccccccchhhcccceEEEecccee-cCCccHHHHHHHHHhcCCCEEEEEe
Confidence 1 11223444555666666522211111110 011110 1223556666666667899999987
Q ss_pred CCC-C--CCCCHHHHHHHHhcCCCCEEEecCC-ChHhHHHhhc--CCEEEEeceEee
Q psy9039 195 NAT-G--DPADVSQLMSVKNAVDLPILIGSGV-TSDNVEHYMT--ADALIIGSHFKQ 245 (251)
Q Consensus 195 ~~~-g--~~~~~~~l~~vr~~~~~PV~vG~GI-~~~~v~~~~~--ADGvIVGS~~~~ 245 (251)
-.. | ..++.+.++++++.+++|++++||+ +.+++.++++ ++||++||+|..
T Consensus 173 i~~dG~~~G~d~~l~~~i~~~~~~pii~~GGv~~~~dl~~l~~~g~~gviig~al~~ 229 (251)
T d1ka9f_ 173 MDRDGTKEGYDLRLTRMVAEAVGVPVIASGGAGRMEHFLEAFQAGAEAALAASVFHF 229 (251)
T ss_dssp TTTTTTCSCCCHHHHHHHHHHCSSCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHT
T ss_pred ecccCccCCcchhHHHHHHhhcceeEEEecCCCCHHHHHHHHHCCCCEEEEhHHHHc
Confidence 432 2 2356899999999999999999999 5899998886 999999999853
|
| >d1mxsa_ c.1.10.1 (A:) KDPG aldolase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: KDPG aldolase species: Pseudomonas putida [TaxId: 303]
Probab=97.65 E-value=3.9e-05 Score=63.50 Aligned_cols=152 Identities=14% Similarity=0.135 Sum_probs=104.2
Q ss_pred CCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHHHHHHHHcCccceecc
Q psy9039 43 PPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQAAGLDFIRAE 122 (251)
Q Consensus 43 ~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g~~Fir~~ 122 (251)
++|.++|+ ..+|| +++.|. ..+.++++|+..++ +-+|+=+..| .+++..+...|++|+=..
T Consensus 36 ~al~~~Gi-~~iEi------tl~~p~---------a~~~i~~l~~~~p~-~~vGaGTV~~--~~~~~~a~~aGa~FivsP 96 (216)
T d1mxsa_ 36 DALAAGGI-RTLEV------TLRSQH---------GLKAIQVLREQRPE-LCVGAGTVLD--RSMFAAVEAAGAQFVVTP 96 (216)
T ss_dssp HHHHHTTC-CEEEE------ESSSTH---------HHHHHHHHHHHCTT-SEEEEECCCS--HHHHHHHHHHTCSSEECS
T ss_pred HHHHHCCC-CEEEE------eCCChh---------HHHHHHHHHHhCCC-cceeeeeeec--HHHHHHHHhCCCCEEECC
Confidence 77999999 99986 666551 23567788888876 4899999987 567888888999996632
Q ss_pred cccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHhhccCCCCCCcccHHHHHHHhhhccccEEEecCCCCCCCCC
Q psy9039 123 SFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSSHAITADVDITETAKAASFFLSDGLIITGNATGDPAD 202 (251)
Q Consensus 123 ~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~~~~~D~v~VTG~~~g~~~~ 202 (251)
| -..++.+++++.+..-+. .-.+.. .+..|..+|++.+=+==... ...
T Consensus 97 ----------~----~~~~v~~~a~~~~i~~iP---------------Gv~Tps-Ei~~A~~~G~~~vKlFPA~~--~~g 144 (216)
T d1mxsa_ 97 ----------G----ITEDILEAGVDSEIPLLP---------------GISTPS-EIMMGYALGYRRFKLFPAEI--SGG 144 (216)
T ss_dssp ----------S----CCHHHHHHHHHCSSCEEC---------------EECSHH-HHHHHHTTTCCEEEETTHHH--HTH
T ss_pred ----------C----CcHHHHHHHHhcCCCccC---------------CcCCHH-HHHHHHHCCCCEEEeccccc--ccc
Confidence 1 245577777776652221 112333 34666667888874421110 012
Q ss_pred HHHHHHHHhcC-CCCEEEecCCChHhHHHhhc--CCEEEEeceEee
Q psy9039 203 VSQLMSVKNAV-DLPILIGSGVTSDNVEHYMT--ADALIIGSHFKQ 245 (251)
Q Consensus 203 ~~~l~~vr~~~-~~PV~vG~GI~~~~v~~~~~--ADGvIVGS~~~~ 245 (251)
.+.++.++.-. ++|++.-|||+.+|+.++++ +-.+..||++..
T Consensus 145 ~~~ikal~~p~p~~~fiptGGV~~~n~~~yl~~~~v~avggs~l~~ 190 (216)
T d1mxsa_ 145 VAAIKAFGGPFGDIRFCPTGGVNPANVRNYMALPNVMCVGTTWMLD 190 (216)
T ss_dssp HHHHHHHHTTTTTCEEEEBSSCCTTTHHHHHHSTTBCCEEECTTSC
T ss_pred HHHHHHHhcccccCceeccCCCCHHHHHHHHhcCCeEEEEccccCC
Confidence 46788888765 79999999999999999996 556666777653
|
| >d1f76a_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydroorotate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=97.58 E-value=0.00017 Score=62.86 Aligned_cols=75 Identities=19% Similarity=0.206 Sum_probs=53.6
Q ss_pred ccHHHHHHHhhhccccEEEecCCCCCC-----------------CC----CHHHHHHHHhcC--CCCEEEecCC-ChHhH
Q psy9039 173 VDITETAKAASFFLSDGLIITGNATGD-----------------PA----DVSQLMSVKNAV--DLPILIGSGV-TSDNV 228 (251)
Q Consensus 173 ~~i~~~a~~a~~~~~D~v~VTG~~~g~-----------------~~----~~~~l~~vr~~~--~~PV~vG~GI-~~~~v 228 (251)
..+.++++.+...++|++..+....+. ++ .++.+.++++.+ ++||+..||| |.+++
T Consensus 225 ~~i~~~a~~~~~~g~~gv~~int~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~v~~v~~~~~~~ipIIG~GGI~s~~Da 304 (336)
T d1f76a_ 225 EELIQVADSLVRHNIDGVIATNTTLDRSLVQGMKNCDQTGGLSGRPLQLKSTEIIRRLSLELNGRLPIIGVGGIDSVIAA 304 (336)
T ss_dssp HHHHHHHHHHHHTTCSEEEECCCBCCCTTSTTSTTTTCSSEEEEGGGHHHHHHHHHHHHHHHTTSSCEEEESSCCSHHHH
T ss_pred hhhhhhHHHHHhcCccchhhhhhhhcccccccccccccccccccchhHHHHHHHHHHHHHHcCCCCeEEEECCCCCHHHH
Confidence 455566665555688888775532221 01 135577787776 7999999999 79999
Q ss_pred HHhhc--CCEEEEeceEeecC
Q psy9039 229 EHYMT--ADALIIGSHFKQGG 247 (251)
Q Consensus 229 ~~~~~--ADGvIVGS~~~~~g 247 (251)
.+++. ||.|.|||+|+..|
T Consensus 305 ~e~i~aGAsaVQv~Tal~~~G 325 (336)
T d1f76a_ 305 REKIAAGASLVQIYSGFIFKG 325 (336)
T ss_dssp HHHHHHTCSEEEESHHHHHHC
T ss_pred HHHHHcCCcHHHHHHHHHhcC
Confidence 99985 99999999986543
|
| >d1vrda1 c.1.5.1 (A:1-85,A:213-457) Inosine monophosphate dehydrogenase (IMPDH) {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Thermotoga maritima [TaxId: 2336]
Probab=97.55 E-value=2.2e-05 Score=69.03 Aligned_cols=69 Identities=23% Similarity=0.367 Sum_probs=48.7
Q ss_pred HHHHHHhhhccccEEEecCCCC----------CCC-CC---HHHHHHHHhcCCCCEEEecCC-ChHhHHHhhc--CCEEE
Q psy9039 176 TETAKAASFFLSDGLIITGNAT----------GDP-AD---VSQLMSVKNAVDLPILIGSGV-TSDNVEHYMT--ADALI 238 (251)
Q Consensus 176 ~~~a~~a~~~~~D~v~VTG~~~----------g~~-~~---~~~l~~vr~~~~~PV~vG~GI-~~~~v~~~~~--ADGvI 238 (251)
.+.++.....|||++.| |... |.. +. ..++.++++..++||++-||| +..++++.+. ||+|.
T Consensus 150 ~~~a~~l~~~GaD~v~V-Gig~Gs~ctt~~~~G~g~p~~sai~~~~~~~~~~~vpvIAdGGi~~~gdiakAla~GAd~Vm 228 (330)
T d1vrda1 150 PEGTEALIKAGADAVKV-GVGPGSICTTRVVAGVGVPQLTAVMECSEVARKYDVPIIADGGIRYSGDIVKALAAGAESVM 228 (330)
T ss_dssp HHHHHHHHHTTCSEEEE-CSSCSTTCHHHHHHCCCCCHHHHHHHHHHHHHTTTCCEEEESCCCSHHHHHHHHHTTCSEEE
T ss_pred HHHHHHHHHcCCCEEee-ccccCccccccceeccccccchhHHHHHHHHHhcCceEEecCCcccCCchheeeeccCceee
Confidence 44455555569999977 3222 221 22 234556677779999999999 6888888885 99999
Q ss_pred EeceEee
Q psy9039 239 IGSHFKQ 245 (251)
Q Consensus 239 VGS~~~~ 245 (251)
+||.|..
T Consensus 229 ~Gs~fa~ 235 (330)
T d1vrda1 229 VGSIFAG 235 (330)
T ss_dssp ESHHHHT
T ss_pred ecchhee
Confidence 9998853
|
| >d1q6oa_ c.1.2.3 (A:) 3-keto-L-gulonate 6-phosphate decarboxylase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Decarboxylase domain: 3-keto-L-gulonate 6-phosphate decarboxylase species: Escherichia coli [TaxId: 562]
Probab=97.50 E-value=4.8e-05 Score=60.91 Aligned_cols=161 Identities=12% Similarity=0.106 Sum_probs=87.0
Q ss_pred CCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHH-HHHHHHcCccceecccccc
Q psy9039 48 VGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAA-LATAQAAGLDFIRAESFVF 126 (251)
Q Consensus 48 ~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~-~~ia~a~g~~Fir~~~~~~ 126 (251)
.++ |++.+ |+|+... .|+. .++++|+..++ .++-......+.... ...+...|++++-+....+
T Consensus 25 ~~v-diiki----g~~~~~~--~G~~-------~i~~l~~~~~~-~~i~~d~k~~d~~~~~~~~~~~~gad~vtvh~~~g 89 (213)
T d1q6oa_ 25 EEV-DIIEV----GTILCVG--EGVR-------AVRDLKALYPH-KIVLADAKIADAGKILSRMCFEANADWVTVICCAD 89 (213)
T ss_dssp GGC-SEEEE----CHHHHHH--HCTH-------HHHHHHHHCTT-SEEEEEEEECSCHHHHHHHHHHTTCSEEEEETTSC
T ss_pred CCc-cEEEe----Ceecccc--CCHH-------HHHHHHHhccc-ccceeEEeeccchHHHHHHHHHcCCCEEEEeccCC
Confidence 489 99974 7777643 4654 45677776553 365555555443222 2344456777766542211
Q ss_pred cccCCCceeecCcchhHHHHHhcCCCcchhhhhhHhhccCCCCCCcccHHHHHHHhhhccccEEEe-cCC---CCCCCCC
Q psy9039 127 GHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSSHAITADVDITETAKAASFFLSDGLII-TGN---ATGDPAD 202 (251)
Q Consensus 127 ~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~~~~~D~v~V-TG~---~~g~~~~ 202 (251)
.+ ...++....++++.. +.+. . ++..+... .......+++.+++ .+. ..+....
T Consensus 90 ----~~-----~~~~~~~~~~~~~~~-~~v~----------~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 147 (213)
T d1q6oa_ 90 ----IN-----TAKGALDVAKEFNGD-VQIE----------L-TGYWTWEQ-AQQWRDAGIGQVVYHRSRDAQAAGVAWG 147 (213)
T ss_dssp ----HH-----HHHHHHHHHHHTTCE-EEEE----------E-CSCCCHHH-HHHHHHTTCCEEEEECCHHHHHTTCCCC
T ss_pred ----ch-----HHHHHHHHHHHcCCc-eecc----------c-CCCCCHHH-HHHHHHhHHHHHHHHHhcccCcCCeeCC
Confidence 10 123344555555531 1110 0 11112222 22222235555543 221 1122333
Q ss_pred HHHHHHHHhc--CCCCEEEecCCChHhHHHhhc--CCEEEEeceEee
Q psy9039 203 VSQLMSVKNA--VDLPILIGSGVTSDNVEHYMT--ADALIIGSHFKQ 245 (251)
Q Consensus 203 ~~~l~~vr~~--~~~PV~vG~GI~~~~v~~~~~--ADGvIVGS~~~~ 245 (251)
...+.++|+. ...|+.++||++++++.++.. ||++||||++.+
T Consensus 148 ~~~l~~i~~~~~~~~~i~~~gGi~~~~~~~~~~~Gad~iVVGr~I~~ 194 (213)
T d1q6oa_ 148 EADITAIKRLSDMGFKVTVTGGLALEDLPLFKGIPIHVFIAGRSIRD 194 (213)
T ss_dssp HHHHHHHHHHHHTTCEEEEESSCCGGGGGGGTTSCCSEEEESHHHHT
T ss_pred HHHHHHHHHhhccCceEecCCCcCcCCHHHHHHcCCCEEEEChhhcC
Confidence 4445555444 368999999999999999996 999999998765
|
| >d1tqxa_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: D-ribulose-5-phosphate 3-epimerase domain: D-ribulose-5-phosphate 3-epimerase species: Plasmodium falciparum [TaxId: 5833]
Probab=97.48 E-value=9.9e-05 Score=61.03 Aligned_cols=174 Identities=10% Similarity=0.129 Sum_probs=93.3
Q ss_pred CCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHHHHHHHHcCccceecc
Q psy9039 43 PPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQAAGLDFIRAE 122 (251)
Q Consensus 43 ~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g~~Fir~~ 122 (251)
+.+.++|+ |.+.+==+-|. |.....-||.+ ++++|+.+++ .|+=+.++.+.|..-+......|+.-+...
T Consensus 22 ~~l~~~~~-d~iHiDimDG~-Fvpn~t~g~~~-------v~~i~~~~~~-~~~dvHLMv~~P~~~i~~~~~~~~~~i~~~ 91 (221)
T d1tqxa_ 22 QRMESLGA-EWIHLDVMDMH-FVPNLSFGPPV-------INNLKKYTKS-IFFDVHLMVEYPEKYVPLLKTSNQLTFHFE 91 (221)
T ss_dssp HHHHHTTC-SEEEEEEEBSS-SSSCBCCCHHH-------HHHHGGGCSS-CEEEEEEESSCGGGGGGGCTTSSEEEEEGG
T ss_pred HHHHHcCC-CEEEEECccCc-CcCccccChHH-------HhhhhhcCCc-hhhhhhHHhhhhhhhhhhhhhcCceeEEee
Confidence 55677888 88765322232 55444456543 4577776543 599999998875321111000111110000
Q ss_pred cccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHhhccCCCCCCcccHHHHHHHhhhccccEEEecCCCCCCC--
Q psy9039 123 SFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSSHAITADVDITETAKAASFFLSDGLIITGNATGDP-- 200 (251)
Q Consensus 123 ~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~~~~~D~v~VTG~~~g~~-- 200 (251)
. ..--..+..+.+++.++.|. + .|+.+ .++.+++.+...-....+|.+.+.+...|..
T Consensus 92 ------~--~~~~~~~~~~~i~~i~~~g~---~--------~Gial-~p~t~~~~~~~~l~~~~~d~vlim~V~pG~~GQ 151 (221)
T d1tqxa_ 92 ------A--LNEDTERCIQLAKEIRDNNL---W--------CGISI-KPKTDVQKLVPILDTNLINTVLVMTVEPGFGGQ 151 (221)
T ss_dssp ------G--GTTCHHHHHHHHHHHHTTTC---E--------EEEEE-CTTSCGGGGHHHHTTTCCSEEEEESSCTTCSSC
T ss_pred ------h--hccccchhhHHHHHHHhcCC---e--------EEEee-ccccccccchhhcccccccEEEEEeeccccccc
Confidence 0 00000011122334444443 1 12111 1112222221111113588886655544432
Q ss_pred ----CCHHHHHHHHhcC-CCCEEEecCCChHhHHHhhc--CCEEEEeceEeec
Q psy9039 201 ----ADVSQLMSVKNAV-DLPILIGSGVTSDNVEHYMT--ADALIIGSHFKQG 246 (251)
Q Consensus 201 ----~~~~~l~~vr~~~-~~PV~vG~GI~~~~v~~~~~--ADGvIVGS~~~~~ 246 (251)
..+++++++|+.. ++.+.|=|||+.+|+..+.. ||.+++||++.+.
T Consensus 152 ~f~~~~l~KI~~lr~~~~~~~I~VDGGIn~~~i~~l~~aGad~iV~GS~if~~ 204 (221)
T d1tqxa_ 152 SFMHDMMGKVSFLRKKYKNLNIQVDGGLNIETTEISASHGANIIVAGTSIFNA 204 (221)
T ss_dssp CCCGGGHHHHHHHHHHCTTCEEEEESSCCHHHHHHHHHHTCCEEEESHHHHTC
T ss_pred ccCcchhHHHHHHHHhcCCcceEEEcccCHHhHHHHHHcCCCEEEEChHHHCC
Confidence 2357888888775 78999999999999999996 9999999998754
|
| >d2flia1 c.1.2.2 (A:3-219) D-ribulose-5-phosphate 3-epimerase {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: D-ribulose-5-phosphate 3-epimerase domain: D-ribulose-5-phosphate 3-epimerase species: Streptococcus pyogenes [TaxId: 1314]
Probab=97.47 E-value=0.0001 Score=60.77 Aligned_cols=171 Identities=17% Similarity=0.193 Sum_probs=102.8
Q ss_pred CCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHHHHHHHHcCccceecc
Q psy9039 43 PPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQAAGLDFIRAE 122 (251)
Q Consensus 43 ~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g~~Fir~~ 122 (251)
+.+.++|+ |.+.+==+ |-=|.+...-||. .++++|+.++ .|+=+-++.+.|...+......|++.+-..
T Consensus 21 ~~~~~~g~-d~iHiDim-Dg~Fvpn~s~g~~-------~i~~i~~~t~--~~~dvHLMv~~P~~~i~~~~~~ga~~i~~H 89 (217)
T d2flia1 21 ARIEETDA-EYVHIDIM-DGQFVPNISFGAD-------VVASMRKHSK--LVFDCHLMVVDPERYVEAFAQAGADIMTIH 89 (217)
T ss_dssp HHHHHTTC-CEEEEEEE-BSSSSSCBCBCHH-------HHHHHHTTCC--SEEEEEEESSSGGGGHHHHHHHTCSEEEEE
T ss_pred HHHHHcCC-CEEEEEcc-cCcCCCccccCHH-------HHHHHHhcCC--CceEeEEEecCHHHHHHHHHHcCCcEEEec
Confidence 66778899 99875211 1224444455664 4567887777 799998888886555555555677766543
Q ss_pred cccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHhhccCCCCCCcccHHHHHHHhhhccccEEEecCCCCCC---
Q psy9039 123 SFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSSHAITADVDITETAKAASFFLSDGLIITGNATGD--- 199 (251)
Q Consensus 123 ~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~~~~~D~v~VTG~~~g~--- 199 (251)
... ..+..+..++.++.+. .+-+. ++ | .|+-..+.... ..+|.+-+-+...|.
T Consensus 90 ~E~----------~~~~~~~i~~i~~~g~-~~Gia--l~-----p-~T~~~~~~~~l-----~~id~vliM~V~pG~~Gq 145 (217)
T d2flia1 90 TES----------TRHIHGALQKIKAAGM-KAGVV--IN-----P-GTPATALEPLL-----DLVDQVLIMTVNPGFGGQ 145 (217)
T ss_dssp GGG----------CSCHHHHHHHHHHTTS-EEEEE--EC-----T-TSCGGGGGGGT-----TTCSEEEEESSCTTCSSC
T ss_pred ccc----------ccCHHHHHHHHHhcCC-eEEEE--ec-----C-CcchhHHHhHH-----hhcCEEEEEEEcCccccc
Confidence 111 1234556677777765 22111 11 1 12212211111 246666544433332
Q ss_pred ---CCCHHHHHHHHhc-----CCCCEEEecCCChHhHHHhhc--CCEEEEeceEeecCe
Q psy9039 200 ---PADVSQLMSVKNA-----VDLPILIGSGVTSDNVEHYMT--ADALIIGSHFKQGGR 248 (251)
Q Consensus 200 ---~~~~~~l~~vr~~-----~~~PV~vG~GI~~~~v~~~~~--ADGvIVGS~~~~~g~ 248 (251)
+...++++++|+. .++++.+=|||+.+|+..+.+ ||.+++||++.+..+
T Consensus 146 ~f~~~~~~ki~~l~~~~~~~~~~~~I~vDGGIn~~~i~~l~~aGad~~V~Gsaif~~~d 204 (217)
T d2flia1 146 AFIPECLEKVATVAKWRDEKGLSFDIEVDGGVDNKTIRACYEAGANVFVAGSYLFKASD 204 (217)
T ss_dssp CCCGGGHHHHHHHHHHHHHTTCCCEEEEESSCCTTTHHHHHHHTCCEEEESHHHHTSSC
T ss_pred ccchhhHHHHHHHHHHHHhcCCCeEEEEeCCCCHHHHHHHHHCCCCEEEEchHHhCCCC
Confidence 1234667666643 368999999999999999986 999999999876543
|
| >d1vc4a_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Indole-3-glycerophosphate synthase, IPGS species: Thermus thermophilus [TaxId: 274]
Probab=97.45 E-value=0.00014 Score=61.44 Aligned_cols=165 Identities=15% Similarity=0.098 Sum_probs=104.9
Q ss_pred CCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHHHHHHHHcCccceecc
Q psy9039 43 PPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQAAGLDFIRAE 122 (251)
Q Consensus 43 ~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g~~Fir~~ 122 (251)
+.++++|+ ++|-|-.+- .|... ...-++++|+.++ +|+---=+.-+ .++..-|++.|++-+=.-
T Consensus 72 ~~y~~~GA-~aiSVLTe~--~~F~G----------s~~dl~~v~~~~~--iPvLrKDFIid-~~QI~ea~~~GADaVLLI 135 (254)
T d1vc4a_ 72 LAYARGGA-RAVSVLTEP--HRFGG----------SLLDLKRVREAVD--LPLLRKDFVVD-PFMLEEARAFGASAALLI 135 (254)
T ss_dssp HHHHHTTC-SEEEEECCC--SSSCC----------CHHHHHHHHHHCC--SCEEEESCCCS-HHHHHHHHHTTCSEEEEE
T ss_pred HHHHhcCC-ceEEEEcCc--ccccc----------cHHHHHHHHHHcC--CCcccCCcccc-HHHHHHHHhccchHHHHH
Confidence 66889999 999885432 33332 2334577888888 79777666656 688888888998876542
Q ss_pred cccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHhhccCCCCCCcccHHHHHHHhhhccccEEEecCCCCC-CCC
Q psy9039 123 SFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSSHAITADVDITETAKAASFFLSDGLIITGNATG-DPA 201 (251)
Q Consensus 123 ~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~~~~~D~v~VTG~~~g-~~~ 201 (251)
+ .+......++..+.+.+|.+.+-.+ | .++.+..+...+++.++|-...-. ...
T Consensus 136 a---------all~~~l~~l~~~A~~lgl~~LVEv---------h-------~~~El~~a~~~~a~iIGINnRdL~t~~v 190 (254)
T d1vc4a_ 136 V---------ALLGELTGAYLEEARRLGLEALVEV---------H-------TERELEIALEAGAEVLGINNRDLATLHI 190 (254)
T ss_dssp H---------HHHGGGHHHHHHHHHHHTCEEEEEE---------C-------SHHHHHHHHHHTCSEEEEESBCTTTCCB
T ss_pred H---------HHHHHHHHHHHHHHHHhCCceEEEe---------c-------cHHHHhhhhcCCCCEEEEeccchhhhhc
Confidence 1 1111123567777888887332221 2 233345555568899999764221 122
Q ss_pred CH---HHH-HHHHhcC-CCCEEEecCC-ChHhHHHhhc-CCEEEEeceEeecCe
Q psy9039 202 DV---SQL-MSVKNAV-DLPILIGSGV-TSDNVEHYMT-ADALIIGSHFKQGGR 248 (251)
Q Consensus 202 ~~---~~l-~~vr~~~-~~PV~vG~GI-~~~~v~~~~~-ADGvIVGS~~~~~g~ 248 (251)
+. ..+ ..+++.. +..++.-+|| |++++..+.. +||+.||++|++..+
T Consensus 191 d~~~~~~l~~~i~~~~~~~i~IsESGI~~~~dv~~l~~g~davLIGesLm~~~d 244 (254)
T d1vc4a_ 191 NLETAPRLGRLARKRGFGGVLVAESGYSRKEELKALEGLFDAVLIGTSLMRAPD 244 (254)
T ss_dssp CTTHHHHHHHHHHHTTCCSEEEEESCCCSHHHHHTTTTTCSEEEECHHHHTSSC
T ss_pred chHHHHHhhhcccccCCCCEEEEccCCCCHHHHHHHHcCCCEEEEChhhcCCCC
Confidence 22 223 3344443 6789999999 7899887655 999999999997654
|
| >d1rpxa_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Potato (Solanum tuberosum) [TaxId: 4113]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: D-ribulose-5-phosphate 3-epimerase domain: D-ribulose-5-phosphate 3-epimerase species: Potato (Solanum tuberosum) [TaxId: 4113]
Probab=97.41 E-value=0.00032 Score=58.33 Aligned_cols=169 Identities=18% Similarity=0.218 Sum_probs=101.9
Q ss_pred CCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHHHHHHHHcCccceecc
Q psy9039 43 PPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQAAGLDFIRAE 122 (251)
Q Consensus 43 ~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g~~Fir~~ 122 (251)
+.|.++|+ |.+.+==+ |-=|.....-||. .++++|+.+. .|+=+-++.+.|...+.--...|++.+-..
T Consensus 30 ~~l~~~g~-d~iHiDIm-DG~Fvpn~t~~~~-------~v~~i~~~t~--~~~dvHLMv~~P~~~i~~~~~~g~~~i~~H 98 (230)
T d1rpxa_ 30 KAIEQAGC-DWIHVDVM-DGRFVPNITIGPL-------VVDSLRPITD--LPLDVHLMIVEPDQRVPDFIKAGADIVSVH 98 (230)
T ss_dssp HHHHHTTC-CCEEEEEE-BSSSSSCBCCCHH-------HHHHHGGGCC--SCEEEEEESSSHHHHHHHHHHTTCSEEEEE
T ss_pred HHHHHcCC-CEEEEeCc-cCCcCCccccChH-------HHhhhhhccC--ceeeeeeeecchhhhHHHHhhcccceeEEe
Confidence 55667788 88765322 2235555556664 4556777777 799999999886544554455667766543
Q ss_pred cccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHhhccCCCCCCcccHHHHHHHhh-h-ccccEEEecCCCCCCC
Q psy9039 123 SFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSSHAITADVDITETAKAAS-F-FLSDGLIITGNATGDP 200 (251)
Q Consensus 123 ~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~-~-~~~D~v~VTG~~~g~~ 200 (251)
..+. . ..+..+++.+-++.|. .+-+ .+ .++.+++.+ . + ..+|.+.+-+...|..
T Consensus 99 ~E~~----~----~~~~~~~i~~ik~~g~-k~Gi----------al-np~T~~~~l----~~~l~~vD~VllM~V~PGf~ 154 (230)
T d1rpxa_ 99 CEQS----S----TIHLHRTINQIKSLGA-KAGV----------VL-NPGTPLTAI----EYVLDAVDLVLIMSVNPGFG 154 (230)
T ss_dssp CSTT----T----CSCHHHHHHHHHHTTS-EEEE----------EE-CTTCCGGGG----TTTTTTCSEEEEESSCTTCS
T ss_pred cccc----c----cccHHHHHHHHHHcCC-eEEE----------Ee-CCCCCHHHH----HHHHhhCCEEEEEEecCCcc
Confidence 2111 0 1134556666666665 2211 11 111222222 2 2 3588886655444432
Q ss_pred -----C-CHHHHHHHHhc-----CCCCEEEecCCChHhHHHhhc--CCEEEEeceEeec
Q psy9039 201 -----A-DVSQLMSVKNA-----VDLPILIGSGVTSDNVEHYMT--ADALIIGSHFKQG 246 (251)
Q Consensus 201 -----~-~~~~l~~vr~~-----~~~PV~vG~GI~~~~v~~~~~--ADGvIVGS~~~~~ 246 (251)
+ ..++++++|+. .+..|.+=|||+.+|+.++.. ||.+++||++...
T Consensus 155 GQ~f~~~~~~kI~~~~~~~~~~~~~~~I~vDGGIn~~~i~~l~~~Gad~~V~GS~if~~ 213 (230)
T d1rpxa_ 155 GQSFIESQVKKISDLRKICAERGLNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGA 213 (230)
T ss_dssp SCCCCTTHHHHHHHHHHHHHHHTCCCEEEEESSCCTTTHHHHHHHTCCEEEESHHHHTS
T ss_pred cchhhhhhHHHHHHHHHHHHhcCCceEEEEECCcCHHHHHHHHHcCCCEEEEChHHHCC
Confidence 2 24666665543 368899999999999999996 9999999998654
|
| >d1wv2a_ c.1.31.1 (A:) Thiazole biosynthesis protein ThiG {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: ThiG-like family: ThiG-like domain: Thiazole biosynthesis protein ThiG species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.37 E-value=0.00017 Score=60.38 Aligned_cols=122 Identities=16% Similarity=0.233 Sum_probs=85.8
Q ss_pred HHHHHHc--CccceecccccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHhhccCCCCCCcccHHHHHHHhhhc
Q psy9039 108 LATAQAA--GLDFIRAESFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSSHAITADVDITETAKAASFF 185 (251)
Q Consensus 108 ~~ia~a~--g~~Fir~~~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~~~ 185 (251)
..++... +.+|+... ..+++--..||..+..+..+.+-.++..++. .+++|. ..++.-+..
T Consensus 85 A~larE~~~~~~~iKLE-----Vi~d~~~L~Pd~~etl~Aa~~Lv~egF~Vlp---------y~~~D~---v~ak~le~~ 147 (243)
T d1wv2a_ 85 CRLARELLDGHNLVKLE-----VLADQKTLFPNVVETLKAAEQLVKDGFDVMV---------YTSDDP---IIARQLAEI 147 (243)
T ss_dssp HHHHHTTTTSCCEEEEC-----CBSCTTTCCBCHHHHHHHHHHHHTTTCEEEE---------EECSCH---HHHHHHHHS
T ss_pred HHHHHHHhCCCceEEEe-----eeccccccCCcHHHHHHHHHHhhcCceEEEe---------ccCCCH---HHHhHHHHc
Confidence 3444443 24677753 3456666778888888888887777777763 223332 234555556
Q ss_pred cccEEEecCCCCCC---CCCHHHHHHHHhcCCCCEEEecCC-ChHhHHHhhc--CCEEEEeceEeec
Q psy9039 186 LSDGLIITGNATGD---PADVSQLMSVKNAVDLPILIGSGV-TSDNVEHYMT--ADALIIGSHFKQG 246 (251)
Q Consensus 186 ~~D~v~VTG~~~g~---~~~~~~l~~vr~~~~~PV~vG~GI-~~~~v~~~~~--ADGvIVGS~~~~~ 246 (251)
|+.++-.-|+--|. ..+...++.+++..++||+++.|| ++.++.++++ ||||.|.|++-+-
T Consensus 148 Gc~~vMplgsPIGsg~Gi~n~~~l~~i~~~~~vpvivdAGIg~psdaa~AMElG~dgVLvnsaIa~A 214 (243)
T d1wv2a_ 148 GCIAVMPLAGLIGSGLGICNPYNLRIILEEAKVPVLVDAGVGTASDAAIAMELGCEAVLMNTAIAHA 214 (243)
T ss_dssp CCSEEEECSSSTTCCCCCSCHHHHHHHHHHCSSCBEEESCCCSHHHHHHHHHHTCSEEEESHHHHTS
T ss_pred CceeeeecccccccccccccHHHHHhccccCCcceEeecccCCHHHHHHHHHccCCEEEechHhhcC
Confidence 99998887764332 234567888888899999999999 8999999997 9999999987653
|
| >d1qo2a_ c.1.2.1 (A:) Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA species: Thermotoga maritima [TaxId: 2336]
Probab=97.31 E-value=6.2e-05 Score=62.81 Aligned_cols=77 Identities=14% Similarity=0.219 Sum_probs=59.5
Q ss_pred cccHHHHHHHhhhccccEEEecCCCC---CCCCCHHHHHHHHhcCCCCEEEecCC-ChHhHHHhh-------c-CCEEEE
Q psy9039 172 DVDITETAKAASFFLSDGLIITGNAT---GDPADVSQLMSVKNAVDLPILIGSGV-TSDNVEHYM-------T-ADALII 239 (251)
Q Consensus 172 ~~~i~~~a~~a~~~~~D~v~VTG~~~---g~~~~~~~l~~vr~~~~~PV~vG~GI-~~~~v~~~~-------~-ADGvIV 239 (251)
..++.+..+.....++.-+++|--.. ....+.+.++++++.+++|++++||+ +.+++.++. . ++||+|
T Consensus 143 ~~~~~~~~~~~~~~g~~eii~~dId~dGt~~G~d~~l~~~i~~~~~~pvi~~GGv~s~~di~~l~~ig~~~~~~~~gviv 222 (241)
T d1qo2a_ 143 EIDPVSLLKRLKEYGLEEIVHTEIEKDGTLQEHDFSLTKKIAIEAEVKVLAAGGISSENSLKTAQKVHTETNGLLKGVIV 222 (241)
T ss_dssp CCCHHHHHHHHHTTTCCEEEEEETTHHHHTCCCCHHHHHHHHHHHTCEEEEESSCCSHHHHHHHHHHHHHTTTSEEEEEE
T ss_pred eeehhHHHHHhhccccceEEEeehhhhhhccccchhhhhhhhccCCceEEEECCCCCHHHHHHHHHccccccCCEeeEEE
Confidence 35667777766667888888876422 23457899999999899999999999 688888774 2 799999
Q ss_pred eceEeecCee
Q psy9039 240 GSHFKQGGRT 249 (251)
Q Consensus 240 GS~~~~~g~~ 249 (251)
||+| +.|++
T Consensus 223 G~al-~~g~l 231 (241)
T d1qo2a_ 223 GRAF-LEGIL 231 (241)
T ss_dssp CHHH-HTTSS
T ss_pred HHHH-HCCCC
Confidence 9998 45654
|
| >d1xm3a_ c.1.31.1 (A:) Thiazole biosynthesis protein ThiG {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: ThiG-like family: ThiG-like domain: Thiazole biosynthesis protein ThiG species: Bacillus subtilis [TaxId: 1423]
Probab=97.31 E-value=0.00026 Score=59.05 Aligned_cols=121 Identities=15% Similarity=0.222 Sum_probs=88.7
Q ss_pred HHHHHHc-CccceecccccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHhhccCCCCCCcccHHHHHHHhhhcc
Q psy9039 108 LATAQAA-GLDFIRAESFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSSHAITADVDITETAKAASFFL 186 (251)
Q Consensus 108 ~~ia~a~-g~~Fir~~~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~~~~ 186 (251)
.-+|... +-+|+... -.+++--+.||..|.++..+.|-.++..++ |.+++|. ..++..+..|
T Consensus 84 A~lARE~~~t~~IKLE-----Vi~D~~~L~PD~~etl~Aae~Lv~eGF~Vl---------pY~~~D~---v~ak~Le~~G 146 (251)
T d1xm3a_ 84 ARLAKASGLCDMIKVE-----VIGCSRSLLPDPVETLKASEQLLEEGFIVL---------PYTSDDV---VLARKLEELG 146 (251)
T ss_dssp HHHHHHTTCCSSEEEC-----CBCCTTTCCBCHHHHHHHHHHHHHTTCCEE---------EEECSCH---HHHHHHHHHT
T ss_pred HHHHHHhcCCceEEEE-----EecCCCCcCCCHHHHHHHHHHHHhCCcEEE---------EecCCCH---HHHHHHHHcC
Confidence 3344443 45888864 355777788999999998888876777776 3333332 2455556668
Q ss_pred ccEEEecCCCCCC---CCCHHHHHHHHhcCCCCEEEecCC-ChHhHHHhhc--CCEEEEeceEee
Q psy9039 187 SDGLIITGNATGD---PADVSQLMSVKNAVDLPILIGSGV-TSDNVEHYMT--ADALIIGSHFKQ 245 (251)
Q Consensus 187 ~D~v~VTG~~~g~---~~~~~~l~~vr~~~~~PV~vG~GI-~~~~v~~~~~--ADGvIVGS~~~~ 245 (251)
|.++-.=|+--|. -.+...|+.+++..++||++=.|| +|.++.+.++ ||||.|-|++-+
T Consensus 147 c~avMPlgsPIGSg~Gl~n~~~l~~i~~~~~vPvIvDAGIG~pSdAa~AMElG~daVLvNTAIA~ 211 (251)
T d1xm3a_ 147 VHAIMPGASPIGSGQGILNPLNLSFIIEQAKVPVIVDAGIGSPKDAAYAMELGADGVLLNTAVSG 211 (251)
T ss_dssp CSCBEECSSSTTCCCCCSCHHHHHHHHHHCSSCBEEESCCCSHHHHHHHHHTTCSEEEESHHHHT
T ss_pred ChhHHHhhhhhhcCCCcCChHHHHHHHhcCCccEEEecCCCCHHHHHHHHHccCCEEEechhhhc
Confidence 8888776654332 235678899998899999999999 8999999997 999999998754
|
| >d1djqa1 c.1.4.1 (A:1-340) Trimethylamine dehydrogenase, N-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Trimethylamine dehydrogenase, N-terminal domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=97.30 E-value=0.00091 Score=58.25 Aligned_cols=45 Identities=16% Similarity=0.090 Sum_probs=38.8
Q ss_pred HHHHHHHHhcCCCCEEEecCC-ChHhHHHhhc---CCEEEEeceEeecC
Q psy9039 203 VSQLMSVKNAVDLPILIGSGV-TSDNVEHYMT---ADALIIGSHFKQGG 247 (251)
Q Consensus 203 ~~~l~~vr~~~~~PV~vG~GI-~~~~v~~~~~---ADGvIVGS~~~~~g 247 (251)
....+.+|+.+++||++.||| +++.+.++++ ||.|-+|-.|+-|=
T Consensus 280 ~~~~~~ik~~~~~pVi~~G~i~~~~~a~~~l~~G~aDlV~~gR~~iadP 328 (340)
T d1djqa1 280 IPWVKLVKQVSKKPVLGVGRYTDPEKMIEIVTKGYADIIGCARPSIADP 328 (340)
T ss_dssp HHHHHHHHTTCSSCEEECSCCCCHHHHHHHHHTTSCSBEEESHHHHHCT
T ss_pred HHHHHHHHHHcCCeEEEECCCCCHHHHHHHHHCCCccchhhHHHHHHCc
Confidence 466778999999999999999 6999999884 99999998887664
|
| >d1z41a1 c.1.4.1 (A:2-338) NADPH dehydrogenase NamA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: NADPH dehydrogenase NamA species: Bacillus subtilis [TaxId: 1423]
Probab=97.29 E-value=0.00061 Score=59.43 Aligned_cols=65 Identities=15% Similarity=0.049 Sum_probs=48.4
Q ss_pred hccccEEEecCCCCCC-----C--CCHHHHHHHHhcCCCCEEEecCC-ChHhHHHhhc---CCEEEEeceEeecCe
Q psy9039 184 FFLSDGLIITGNATGD-----P--ADVSQLMSVKNAVDLPILIGSGV-TSDNVEHYMT---ADALIIGSHFKQGGR 248 (251)
Q Consensus 184 ~~~~D~v~VTG~~~g~-----~--~~~~~l~~vr~~~~~PV~vG~GI-~~~~v~~~~~---ADGvIVGS~~~~~g~ 248 (251)
..|+|.+-+++..... . ......+++|+.+++||++.||| +++.+.++++ ||.|-+|-.|+-|-+
T Consensus 239 ~~g~d~~~~s~g~~~~~~~~~~~~~~~~~~~~ik~~~~~pvi~~G~i~~~~~ae~~l~~g~~D~V~~gR~~iadPd 314 (337)
T d1z41a1 239 EQGVDLIDCSSGALVHADINVFPGYQVSFAEKIREQADMATGAVGMITDGSMAEEILQNGRADLIFIGRELLRDPF 314 (337)
T ss_dssp HTTCCEEEEECCCSSCCCCCCCTTTTHHHHHHHHHHHCCEEEECSSCCSHHHHHHHHHTTSCSEEEECHHHHHCTT
T ss_pred HcCCcccccccccccccccccCCcccHHHHHHHHHhcCceEEEeCCcCCHHHHHHHHHCCCcceehhhHHHHhCch
Confidence 3467777665432211 1 13466778999999999999999 6999999984 999999988876643
|
| >d1juba_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Lactococcus lactis, isozyme A [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydroorotate dehydrogenase species: Lactococcus lactis, isozyme A [TaxId: 1358]
Probab=97.28 E-value=0.0004 Score=59.39 Aligned_cols=164 Identities=10% Similarity=0.030 Sum_probs=86.7
Q ss_pred HHHHHHHHHHHHhCCCCccEEEEEeeCChHHHHHH----HHHcCccceecccccccccCCCceeecCcchhHHHHHhcCC
Q psy9039 76 ANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALAT----AQAAGLDFIRAESFVFGHMADEGLMNAQAGPLLRYRKQIGA 151 (251)
Q Consensus 76 aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~i----a~a~g~~Fir~~~~~~~~~~~~Gli~~da~e~~~~r~~l~~ 151 (251)
..+.++.+..|+...+ .|+++++..+....-... ..+.+++++..|..|-...+.. -..-+...+.+..+++..
T Consensus 78 ~~~~~~~~~~~~~~~~-~pvi~si~~~~~~~~~~~~~~~~~~~~ad~ielNiscPn~~~~~-~~~~~~~~~~~~~~~v~~ 155 (311)
T d1juba_ 78 YYLDYVLKNQKENAQE-GPIFFSIAGMSAAENIAMLKKIQESDFSGITELNLSCPNVPGEP-QLAYDFEATEKLLKEVFT 155 (311)
T ss_dssp HHHHHHHHHHHHTCSS-SCCEEEECCSSHHHHHHHHHHHHHSCCCSEEEEESCCCCSSSCC-CGGGCHHHHHHHHHHHTT
T ss_pred HHHHHHHHhhhhcccC-CCceeeccccccchhHHHHHHHhhccccceeeeccccccccccc-cccccHHHHHHHHHHhhc
Confidence 3455566666655443 599999877653221222 2223367777764443221111 011122222222222221
Q ss_pred -CcchhhhhhHhhccCCCCCCcccHHHHHHHhhhccccEEEecCCC---------C-----------CC---CC----CH
Q psy9039 152 -DNVLVFTDIKKKHSSHAITADVDITETAKAASFFLSDGLIITGNA---------T-----------GD---PA----DV 203 (251)
Q Consensus 152 -~~i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~~~~~D~v~VTG~~---------~-----------g~---~~----~~ 203 (251)
..+.++ .|.+ |. .....+..+++.+...++|++...+.. + |. .+ .+
T Consensus 156 ~~~~pv~----vKl~-p~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~sg~~l~~~al 229 (311)
T d1juba_ 156 FFTKPLG----VKLP-PY-FDLVHFDIMAEILNQFPLTYVNSVNSIGNGLFIDPEAESVVIKPKDGFGGIGGAYIKPTAL 229 (311)
T ss_dssp TCCSCEE----EEEC-CC-CSHHHHHHHHHHHTTSCCCEEEECCCEEEEECEETTTTEESCSGGGGEEEEESGGGHHHHH
T ss_pred cccccee----eccc-cc-chhhHHHHHHHHHHhhccceEeccccccccccccccccccccccccccCCccccccCchHH
Confidence 122222 2321 21 222334445555555677777554320 0 00 00 13
Q ss_pred HHHHHHHhcC--CCCEEEecCC-ChHhHHHhhc--CCEEEEeceEeecC
Q psy9039 204 SQLMSVKNAV--DLPILIGSGV-TSDNVEHYMT--ADALIIGSHFKQGG 247 (251)
Q Consensus 204 ~~l~~vr~~~--~~PV~vG~GI-~~~~v~~~~~--ADGvIVGS~~~~~g 247 (251)
+.+.++++.+ ++||+..||| |++++.+++. ||.|.++|+|+.+|
T Consensus 230 ~~i~~i~~~~~~~~~Iig~GGI~s~~Da~~~i~aGA~~Vql~tal~~~G 278 (311)
T d1juba_ 230 ANVRAFYTRLKPEIQIIGTGGIETGQDAFEHLLCGATMLQIGTALHKEG 278 (311)
T ss_dssp HHHHHHHTTSCTTSEEEEESSCCSHHHHHHHHHHTCSEEEECHHHHHHC
T ss_pred HHHHHHHHhcCCCeeEEecCCcCCHHHHHHHHHcCCCceeeeHhhHhcC
Confidence 5566777766 5999999999 7999999886 99999999998766
|
| >d1d3ga_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydroorotate dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.25 E-value=0.0006 Score=59.90 Aligned_cols=74 Identities=19% Similarity=0.258 Sum_probs=53.2
Q ss_pred cHHHHHHHhhhccccEEEecCCCCCCC---------------------CCHHHHHHHHhcC--CCCEEEecCC-ChHhHH
Q psy9039 174 DITETAKAASFFLSDGLIITGNATGDP---------------------ADVSQLMSVKNAV--DLPILIGSGV-TSDNVE 229 (251)
Q Consensus 174 ~i~~~a~~a~~~~~D~v~VTG~~~g~~---------------------~~~~~l~~vr~~~--~~PV~vG~GI-~~~~v~ 229 (251)
.+.++++.+...++|++..+....+.. ..+..++++++.+ ++||+..||| |.+++.
T Consensus 235 ~i~~~a~~~~~~g~~gi~~~nt~~~~~~~~~~~~~~~~gg~sG~~~~~i~l~~v~~v~~~~~~~ipIig~GGI~s~~Da~ 314 (367)
T d1d3ga_ 235 DKEDIASVVKELGIDGLIVTNTTVSRPAGLQGALRSETGGLSGKPLRDLSTQTIREMYALTQGRVPIIGVGGVSSGQDAL 314 (367)
T ss_dssp HHHHHHHHHHHHTCCEEEECCCBSCCCTTCCCTTTTSSSEEEEGGGHHHHHHHHHHHHHHTTTCSCEEEESSCCSHHHHH
T ss_pred hhhhhHHHHHhhhhheeecccccccccccccccccccccccccccchhhhHHHHHHHHHHhCCCccEEEECCCCCHHHHH
Confidence 455566666667999998765422110 1134566777655 6999999999 799999
Q ss_pred Hhhc--CCEEEEeceEeecC
Q psy9039 230 HYMT--ADALIIGSHFKQGG 247 (251)
Q Consensus 230 ~~~~--ADGvIVGS~~~~~g 247 (251)
+++. ||.|.|||+|+..|
T Consensus 315 e~i~aGAs~VQi~Ta~~~~G 334 (367)
T d1d3ga_ 315 EKIRAGASLVQLYTALTFWG 334 (367)
T ss_dssp HHHHHTCSEEEESHHHHHHC
T ss_pred HHHHcCCCHHHhhHHHHhcC
Confidence 9985 99999999986443
|
| >d1jvna1 c.1.2.1 (A:230-552) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Baker's yeast (Saccharomyces cerevisiae), His7 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Baker's yeast (Saccharomyces cerevisiae), His7 [TaxId: 4932]
Probab=97.22 E-value=0.00026 Score=61.73 Aligned_cols=74 Identities=23% Similarity=0.384 Sum_probs=61.1
Q ss_pred cccHHHHHHHhhhccccEEEecCCCC-C--CCCCHHHHHHHHhcCCCCEEEecCC-ChHhHHHhhc---CCEEEEeceEe
Q psy9039 172 DVDITETAKAASFFLSDGLIITGNAT-G--DPADVSQLMSVKNAVDLPILIGSGV-TSDNVEHYMT---ADALIIGSHFK 244 (251)
Q Consensus 172 ~~~i~~~a~~a~~~~~D~v~VTG~~~-g--~~~~~~~l~~vr~~~~~PV~vG~GI-~~~~v~~~~~---ADGvIVGS~~~ 244 (251)
+..+.+.++....+|+.-+++|--.. | ...+.++++++++.+++||++.||+ +.+++.+++. +||+++||+|-
T Consensus 219 ~~~l~~~i~~~~~~G~GEIlltdIdrDGt~~G~D~el~~~i~~~~~iPiIasGGi~s~~di~~ll~~~~v~gv~~gs~~~ 298 (323)
T d1jvna1 219 DLGVWELTRACEALGAGEILLNCIDKDGSNSGYDLELIEHVKDAVKIPVIASSGAGVPEHFEEAFLKTRADACLGAGMFH 298 (323)
T ss_dssp EEEHHHHHHHHHHTTCCEEEECCGGGTTTCSCCCHHHHHHHHHHCSSCEEECSCCCSHHHHHHHHHHSCCSEEEESHHHH
T ss_pred CchHHHHhhhhhccCcceeEEEeecccccccccchhHHHHHHHhCCCCEEEECCCCCHHHHHHHHHhCCCeEEEEhhHHH
Confidence 34677888888878999999998533 3 2457899999999999999999999 6899988763 99999999985
Q ss_pred e
Q psy9039 245 Q 245 (251)
Q Consensus 245 ~ 245 (251)
.
T Consensus 299 ~ 299 (323)
T d1jvna1 299 R 299 (323)
T ss_dssp T
T ss_pred c
Confidence 4
|
| >d1tqja_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Synechocystis sp. PCC 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: D-ribulose-5-phosphate 3-epimerase domain: D-ribulose-5-phosphate 3-epimerase species: Synechocystis sp. PCC 6803 [TaxId: 1148]
Probab=97.19 E-value=0.00033 Score=57.85 Aligned_cols=172 Identities=16% Similarity=0.154 Sum_probs=100.0
Q ss_pred CCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHHHHHHHHcCccceecc
Q psy9039 43 PPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQAAGLDFIRAE 122 (251)
Q Consensus 43 ~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g~~Fir~~ 122 (251)
+.+.++|+ |.+.+== .|--|.....-||. +++.+|+.++ .|+=+-++.+.|...+.--...|++.+-..
T Consensus 22 ~~l~~~g~-d~iHiDI-mDG~Fvpn~t~~~~-------~~~~i~~~t~--~~~dvHLMv~~P~~~i~~~~~~g~~~i~~H 90 (221)
T d1tqja_ 22 KAVDEAGA-DWIHVDV-MDGRFVPNITIGPL-------IVDAIRPLTK--KTLDVHLMIVEPEKYVEDFAKAGADIISVH 90 (221)
T ss_dssp HHHHHTTC-SEEEEEE-EBSSSSSCBCBCHH-------HHHHHGGGCC--SEEEEEEESSSGGGTHHHHHHHTCSEEEEE
T ss_pred HHHHHcCC-CEEEEEC-ccCCccCccccCcH-------hHHhhhhccC--cceeeeEEEeCHHHHHHHHhhccceEEEEe
Confidence 56678889 8887521 23346555556664 4566777777 799999999886444443344555555443
Q ss_pred cccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHhhccCCCCCCcccHHHHHHHhhhccccEEEecCCCCCCC--
Q psy9039 123 SFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSSHAITADVDITETAKAASFFLSDGLIITGNATGDP-- 200 (251)
Q Consensus 123 ~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~~~~~D~v~VTG~~~g~~-- 200 (251)
.... -.++..+...+.++.|. .+-+. ++ | .|+-..+.... .-+|.+-+-+...|..
T Consensus 91 ~E~~--------~~~~~~~~~~~i~~~g~-~~Gia--l~-----p-~T~~~~l~~~l-----~~~d~vlvM~V~pG~~GQ 148 (221)
T d1tqja_ 91 VEHN--------ASPHLHRTLCQIRELGK-KAGAV--LN-----P-STPLDFLEYVL-----PVCDLILIMSVNPGFGGQ 148 (221)
T ss_dssp CSTT--------TCTTHHHHHHHHHHTTC-EEEEE--EC-----T-TCCGGGGTTTG-----GGCSEEEEESSCC----C
T ss_pred eccc--------cChhhHHHHHHHHHCCC-CEEEE--ec-----C-CCcHHHHHHHH-----hhhcEEEEEEecCCCCCc
Confidence 1110 12234555666666665 11111 11 1 12222221111 2477776644433321
Q ss_pred ----CCHHHHHHHHhc-----CCCCEEEecCCChHhHHHhhc--CCEEEEeceEeecC
Q psy9039 201 ----ADVSQLMSVKNA-----VDLPILIGSGVTSDNVEHYMT--ADALIIGSHFKQGG 247 (251)
Q Consensus 201 ----~~~~~l~~vr~~-----~~~PV~vG~GI~~~~v~~~~~--ADGvIVGS~~~~~g 247 (251)
...++++++++. .+.++.+=|||+.+|+.++.. ||.+++||++.++.
T Consensus 149 ~f~~~~~~ki~~l~~~~~~~~~~~~I~VDGGIn~~~i~~l~~~Gad~~V~GS~if~~~ 206 (221)
T d1tqja_ 149 SFIPEVLPKIRALRQMCDERGLDPWIEVDGGLKPNNTWQVLEAGANAIVAGSAVFNAP 206 (221)
T ss_dssp CCCGGGHHHHHHHHHHHHHHTCCCEEEEESSCCTTTTHHHHHHTCCEEEESHHHHTSS
T ss_pred ccchhhHHHHHHHHhhhhccccceEEEEECCcCHHHHHHHHHcCCCEEEEChHHhCCC
Confidence 224666665553 368899999999999999996 99999999976543
|
| >d1piia2 c.1.2.4 (A:1-254) Indole-3-glycerophosphate synthase, IPGS {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Indole-3-glycerophosphate synthase, IPGS species: Escherichia coli [TaxId: 562]
Probab=97.04 E-value=0.0011 Score=55.74 Aligned_cols=163 Identities=12% Similarity=0.072 Sum_probs=102.3
Q ss_pred CcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHHHHHHHHcCccceecccc
Q psy9039 45 SVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQAAGLDFIRAESF 124 (251)
Q Consensus 45 l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g~~Fir~~~~ 124 (251)
++++|+ ++|-|-.+- .|-.. ...-++++|+.++ .|+---=|.-+ .++..-|+..|++-+=.-+
T Consensus 76 ~~~~gA-~aiSVLTe~--~~F~G----------s~~~l~~v~~~~~--~PiLrKDFIid-~~QI~ear~~GADavLLI~- 138 (254)
T d1piia2 76 IYKHYA-SAISVLTDE--KYFQG----------SFNFLPIVSQIAP--QPILCKDFIID-PYQIYLARYYQADACLLML- 138 (254)
T ss_dssp HHTTTC-SEEEEECCS--TTTCC----------CTTHHHHHHHHCC--SCEEEESCCCS-HHHHHHHHHTTCSEEEEET-
T ss_pred HHHhcc-CceEEeccc--ccCCC----------CHHHHHHHHhccc--cccchhcccCc-HHHHHHHHhhccchhhhhH-
Confidence 667899 998875432 23322 1123456788888 78654444444 6788888888887655311
Q ss_pred cccccCCCceeec-CcchhHHHHHhcCCCcchhhhhhHhhccCCCCCCcccHHHHHHHhhhccccEEEecCCCCC-CCCC
Q psy9039 125 VFGHMADEGLMNA-QAGPLLRYRKQIGADNVLVFTDIKKKHSSHAITADVDITETAKAASFFLSDGLIITGNATG-DPAD 202 (251)
Q Consensus 125 ~~~~~~~~Gli~~-da~e~~~~r~~l~~~~i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~~~~~D~v~VTG~~~g-~~~~ 202 (251)
.++.+ ...++..+.+.+|.+.+-.+ | .++..+.+...+++.++|-...-. ...+
T Consensus 139 --------~~L~~~~l~~l~~~a~~lgl~~LVEv---------h-------~~~El~~a~~~~a~iIGINnRnL~tf~vd 194 (254)
T d1piia2 139 --------SVLDDDQYRQLAAVAHSLEMGVLTEV---------S-------NEEEQERAIALGAKVVGINNRDLRDLSID 194 (254)
T ss_dssp --------TTCCHHHHHHHHHHHHHTTCEEEEEE---------C-------SHHHHHHHHHTTCSEEEEESEETTTTEEC
T ss_pred --------hhhcccHHHHHHHHHHHHhhhHHHhh---------c-------cHHHHHHHHhhcccccCccccchhhhhhh
Confidence 11222 35678888899987432221 2 133345555568899988764221 2234
Q ss_pred HHHHHHHHhcC--CCCEEEecCC-ChHhHHHhhc-CCEEEEeceEeecCe
Q psy9039 203 VSQLMSVKNAV--DLPILIGSGV-TSDNVEHYMT-ADALIIGSHFKQGGR 248 (251)
Q Consensus 203 ~~~l~~vr~~~--~~PV~vG~GI-~~~~v~~~~~-ADGvIVGS~~~~~g~ 248 (251)
++...++.+.. +..++.-+|| |+++++.+.. +||+.||++|++..+
T Consensus 195 ~~~t~~L~~~ip~~~~~VsESGI~~~~d~~~l~~g~davLiGeslm~~~d 244 (254)
T d1piia2 195 LNRTRELAPKLGHNVTVISESGINTYAQVRELSHFANGFLIGSALMAHDD 244 (254)
T ss_dssp THHHHHHHHHHCTTSEEEEESCCCCHHHHHHHTTTCSEEEECHHHHTCSC
T ss_pred hHHHHHHHHhCCCCCEEEEcCCCCCHHHHHHHHcCCCEEEEChHHhCCCC
Confidence 44444444443 6788999999 7999988766 999999999987643
|
| >d1ps9a1 c.1.4.1 (A:1-330) 2,4-dienoyl-CoA reductase, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: 2,4-dienoyl-CoA reductase, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.01 E-value=0.00016 Score=63.02 Aligned_cols=46 Identities=15% Similarity=0.270 Sum_probs=39.1
Q ss_pred HHHHHHHHhcCCCCEEEecCC-ChHhHHHhhc---CCEEEEeceEeecCe
Q psy9039 203 VSQLMSVKNAVDLPILIGSGV-TSDNVEHYMT---ADALIIGSHFKQGGR 248 (251)
Q Consensus 203 ~~~l~~vr~~~~~PV~vG~GI-~~~~v~~~~~---ADGvIVGS~~~~~g~ 248 (251)
....+++|+.+++||++.||| +++.+.++++ ||.|-+|-.|+-|-+
T Consensus 269 ~~~~~~ik~~~~~pvi~~G~i~~~~~ae~~l~~g~~D~V~~gR~~iadP~ 318 (330)
T d1ps9a1 269 SWVTRKLKGHVSLPLVTTNRINDPQVADDILSRGDADMVSMARPFLADAE 318 (330)
T ss_dssp HHHHHHHTTSCSSCEEECSSCCSHHHHHHHHHTTSCSEEEESTHHHHCTT
T ss_pred HHHHHHHHhhCCceEEEeCCCCCHHHHHHHHHCCCcchhHhhHHHHhChh
Confidence 355678999999999999999 6999999984 999999988876643
|
| >d1vyra_ c.1.4.1 (A:) Pentaerythritol tetranirate reductase {Enterobacter cloacae [TaxId: 550]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Pentaerythritol tetranirate reductase species: Enterobacter cloacae [TaxId: 550]
Probab=97.00 E-value=0.0011 Score=58.26 Aligned_cols=65 Identities=12% Similarity=0.072 Sum_probs=48.9
Q ss_pred hccccEEEecCCCCC-CCC-CHHHHHHHHhcCCCCEEEecCCChHhHHHhhc---CCEEEEeceEeecCe
Q psy9039 184 FFLSDGLIITGNATG-DPA-DVSQLMSVKNAVDLPILIGSGVTSDNVEHYMT---ADALIIGSHFKQGGR 248 (251)
Q Consensus 184 ~~~~D~v~VTG~~~g-~~~-~~~~l~~vr~~~~~PV~vG~GI~~~~v~~~~~---ADGvIVGS~~~~~g~ 248 (251)
..|+|.+=++..... ..+ ....-+.+|+.++.||+.+|++|++.+.++++ ||.|-+|-.|+-|-+
T Consensus 261 ~~gvd~i~vs~~~~~~~~~~~~~~~~~~~~~~~~~vi~~G~~t~~~ae~~l~~G~~DlV~~gR~liadP~ 330 (363)
T d1vyra_ 261 KRGIAYLHMSETDLAGGKPYSEAFRQKVRERFHGVIIGAGAYTAEKAEDLIGKGLIDAVAFGRDYIANPD 330 (363)
T ss_dssp HTTCSEEEEECCBTTBCCCCCHHHHHHHHHHCCSEEEEESSCCHHHHHHHHHTTSCSEEEESHHHHHCTT
T ss_pred hcCCeeeecccCCccCCccccHHHHHHHHHhcCceEEecCCCCHHHHHHHHHCCCcceehhhHHHHHCcc
Confidence 357888877754322 222 34556678888999999888889999999984 999999988877644
|
| >d1i4na_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Indole-3-glycerophosphate synthase, IPGS species: Thermotoga maritima [TaxId: 2336]
Probab=96.97 E-value=0.0018 Score=54.28 Aligned_cols=161 Identities=12% Similarity=0.143 Sum_probs=101.5
Q ss_pred CCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHHHHHHHHcCccceecccccc
Q psy9039 47 PVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQAAGLDFIRAESFVF 126 (251)
Q Consensus 47 ~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g~~Fir~~~~~~ 126 (251)
++|+ ++|-|-.+- .|-.. ...-++++|+.++ +|+---=|.-+ .++..-|+..|++-+=.-+
T Consensus 71 e~GA-~aiSVLTd~--~~F~G----------s~~~l~~vr~~~~--~PiLrKDFIid-~~QI~ea~~~GADaiLLI~--- 131 (251)
T d1i4na_ 71 DELA-DAISILTEK--HYFKG----------DPAFVRAARNLTC--RPILAKDFYID-TVQVKLASSVGADAILIIA--- 131 (251)
T ss_dssp HHHC-SEEEEECCC--SSSCC----------CTHHHHHHHTTCC--SCEEEECCCCS-THHHHHHHHTTCSEEEEEG---
T ss_pred hcCC-cceEEeccc--CCCCC----------CHHHHHHHhhccc--CchhhhhhhhC-HHHHHHHHhhccceEEeec---
Confidence 4588 888774322 22222 1223567888877 79665545445 5778888888887655421
Q ss_pred cccCCCceee-cCcchhHHHHHhcCCCcchhhhhhHhhccCCCCCCcccHHHHHHHhh-hccccEEEecCCCCC-CCCCH
Q psy9039 127 GHMADEGLMN-AQAGPLLRYRKQIGADNVLVFTDIKKKHSSHAITADVDITETAKAAS-FFLSDGLIITGNATG-DPADV 203 (251)
Q Consensus 127 ~~~~~~Gli~-~da~e~~~~r~~l~~~~i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~-~~~~D~v~VTG~~~g-~~~~~ 203 (251)
.++. ....++..+.+.+|.+.+-.+ | + ++....+. ..+++.++|-...-. ...+.
T Consensus 132 ------~~L~~~~l~~l~~~a~~lgle~LvEv---------h------~-~~El~~al~~~~a~iiGINnRdL~t~~vd~ 189 (251)
T d1i4na_ 132 ------RILTAEQIKEIYEAAEELGMDSLVEV---------H------S-REDLEKVFSVIRPKIIGINTRDLDTFEIKK 189 (251)
T ss_dssp ------GGSCHHHHHHHHHHHHTTTCEEEEEE---------C------S-HHHHHHHHTTCCCSEEEEECBCTTTCCBCT
T ss_pred ------ccccHHHHHHHHHHHHHhCCeeeccc---------C------C-HHHHHHHhcccccceeeeeecchhccchhh
Confidence 1121 136778888888887433221 2 2 22334443 457899999775322 23345
Q ss_pred HHHHHHHhcC--CCCEEEecCC-ChHhHHHhhc-CCEEEEeceEeecCe
Q psy9039 204 SQLMSVKNAV--DLPILIGSGV-TSDNVEHYMT-ADALIIGSHFKQGGR 248 (251)
Q Consensus 204 ~~l~~vr~~~--~~PV~vG~GI-~~~~v~~~~~-ADGvIVGS~~~~~g~ 248 (251)
+...++.... +.+++.-+|| +++++..+.. +||+.||++|++..+
T Consensus 190 ~~~~~L~~~ip~~~~~IaESGI~~~~d~~~l~~G~davLIG~sLm~~~~ 238 (251)
T d1i4na_ 190 NVLWELLPLVPDDTVVVAESGIKDPRELKDLRGKVNAVLVGTSIMKAEN 238 (251)
T ss_dssp THHHHHGGGSCTTSEEEEESCCCCGGGHHHHTTTCSEEEECHHHHHCSS
T ss_pred hHHHHHHhhCCCCCEEEEcCCCCCHHHHHHHHhCCCEEEEChHHhCCCC
Confidence 5555555554 6899999999 7999987755 999999999998654
|
| >d1tv5a1 c.1.4.1 (A:158-566) Dihydroorotate dehydrogenase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydroorotate dehydrogenase species: Plasmodium falciparum [TaxId: 5833]
Probab=96.96 E-value=0.00033 Score=62.81 Aligned_cols=76 Identities=18% Similarity=0.186 Sum_probs=58.4
Q ss_pred cccHHHHHHHhhhccccEEEecCCCCCCC-------------------CCHHHHHHHHhcC--CCCEEEecCC-ChHhHH
Q psy9039 172 DVDITETAKAASFFLSDGLIITGNATGDP-------------------ADVSQLMSVKNAV--DLPILIGSGV-TSDNVE 229 (251)
Q Consensus 172 ~~~i~~~a~~a~~~~~D~v~VTG~~~g~~-------------------~~~~~l~~vr~~~--~~PV~vG~GI-~~~~v~ 229 (251)
+..+.++++.+..+++|++++|.+..+.. ..++.+.++++.+ ++||+.-||| |.+++.
T Consensus 279 ~~~i~~i~~~~~~~g~dgii~~Nt~~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~v~~~~~~~ipIIGvGGI~s~~Da~ 358 (409)
T d1tv5a1 279 QEQKKEIADVLLETNIDGMIISNTTTQINDIKSFENKKGGVSGAKLKDISTKFICEMYNYTNKQIPIIASGGIFSGLDAL 358 (409)
T ss_dssp HHHHHHHHHHHHHTTCSEEEECCCBSCCCCCGGGTTCCSEEEEHHHHHHHHHHHHHHHHHTTTCSCEEEESSCCSHHHHH
T ss_pred chhhHHHHHHHHhccccceecccccccccccccccccCCcccchhHHHHHHHHHHHHHHHcCCCceEEEECCCCCHHHHH
Confidence 34466777776678999999988754431 1245677888877 4999999999 789988
Q ss_pred Hhhc--CCEEEEeceEeecC
Q psy9039 230 HYMT--ADALIIGSHFKQGG 247 (251)
Q Consensus 230 ~~~~--ADGvIVGS~~~~~g 247 (251)
+.+. ||.|+|+|+|+..|
T Consensus 359 e~i~AGAs~VQv~T~li~~G 378 (409)
T d1tv5a1 359 EKIEAGASVCQLYSCLVFNG 378 (409)
T ss_dssp HHHHTTEEEEEESHHHHHHG
T ss_pred HHHHcCCCHHhhhhHHHhcC
Confidence 8885 99999999987654
|
| >d1nsja_ c.1.2.4 (A:) N-(5'phosphoribosyl)antranilate isomerase, PRAI {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: N-(5'phosphoribosyl)antranilate isomerase, PRAI species: Thermotoga maritima [TaxId: 2336]
Probab=96.87 E-value=0.00028 Score=57.35 Aligned_cols=51 Identities=18% Similarity=0.300 Sum_probs=39.3
Q ss_pred CCCCCCHHHHHHHHhcCCCCEEEecCCChHhHHHhhc---CCEEEEeceEee-cCe
Q psy9039 197 TGDPADVSQLMSVKNAVDLPILIGSGVTSDNVEHYMT---ADALIIGSHFKQ-GGR 248 (251)
Q Consensus 197 ~g~~~~~~~l~~vr~~~~~PV~vG~GI~~~~v~~~~~---ADGvIVGS~~~~-~g~ 248 (251)
+|..-+++.++.++.. ..|++++|||+++|+.++++ .+|+=|-|.+.. .|.
T Consensus 135 tG~~~dw~~~~~~~~~-~~~~~LAGGl~~~Nv~~ai~~~~p~gvDvsSgvE~~~G~ 189 (205)
T d1nsja_ 135 SGKTFDWSLILPYRDR-FRYLVLSGGLNPENVRSAIDVVRPFAVDVSSGVEAFPGK 189 (205)
T ss_dssp CCSCCCGGGTGGGGGG-SSCEEEESSCCTTTHHHHHHHHCCSEEEESGGGEEETTE
T ss_pred CCcccchhhcccchhc-ccceeeecCCCHHHHHHHHHHhCCCEEEEcCcccCCCCc
Confidence 4445567766665543 36999999999999998884 999999999876 564
|
| >d1twda_ c.1.30.1 (A:) Copper homeostasis protein CutC {Shigella flexneri [TaxId: 623]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: CutC-like family: CutC-like domain: Copper homeostasis protein CutC species: Shigella flexneri [TaxId: 623]
Probab=96.63 E-value=0.0058 Score=50.94 Aligned_cols=54 Identities=19% Similarity=0.364 Sum_probs=42.1
Q ss_pred HHhhhccccEEEecCCCCCCCCCHHHHHHHHhcCC-CCEEEecCCChHhHHHhhc
Q psy9039 180 KAASFFLSDGLIITGNATGDPADVSQLMSVKNAVD-LPILIGSGVTSDNVEHYMT 233 (251)
Q Consensus 180 ~~a~~~~~D~v~VTG~~~g~~~~~~~l~~vr~~~~-~PV~vG~GI~~~~v~~~~~ 233 (251)
+.....|+|.+-.||....-....+.|+++.+..+ .=|++||||+++|+.++++
T Consensus 134 ~~Li~lG~~rILTSGg~~~a~~G~~~L~~L~~~a~~~iIm~GgGI~~~Ni~~l~~ 188 (247)
T d1twda_ 134 NNLAELGIARVLTSGQKSDALQGLSKIMELIAHRDAPIIMAGAGVRAENLHHFLD 188 (247)
T ss_dssp HHHHHHTCCEEEECTTSSSTTTTHHHHHHHHTSSSCCEEEEESSCCTTTHHHHHH
T ss_pred HHHHhcCCCeEeccCCCCchhHHHHHHHHHHHhcCCcEEEecCCCCHHHHHHHHH
Confidence 44444589999999987766667888888876653 3378899999999998875
|
| >d1vhna_ c.1.4.1 (A:) Putative flavin oxidoreducatase TM0096 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Putative flavin oxidoreducatase TM0096 species: Thermotoga maritima [TaxId: 2336]
Probab=96.54 E-value=0.0048 Score=52.80 Aligned_cols=73 Identities=12% Similarity=0.194 Sum_probs=54.6
Q ss_pred cccHHHHHHHhhhccccEEEecCCCCC----CCCCHHHHHHHHhcCCCCEEEecCC-ChHhHHHhhc---CCEEEEeceE
Q psy9039 172 DVDITETAKAASFFLSDGLIITGNATG----DPADVSQLMSVKNAVDLPILIGSGV-TSDNVEHYMT---ADALIIGSHF 243 (251)
Q Consensus 172 ~~~i~~~a~~a~~~~~D~v~VTG~~~g----~~~~~~~l~~vr~~~~~PV~vG~GI-~~~~v~~~~~---ADGvIVGS~~ 243 (251)
+....+.++.....|+|.+.|=|.... .+.+++.++++++ ++||++.||| |.+++.+.++ ||||.+|-..
T Consensus 135 ~~~~~~~~~~l~~~G~~~itvH~Rt~~q~~~~~a~~~~i~~~~~--~ipvi~NGdI~s~~d~~~~l~~tg~dgVMiGRga 212 (305)
T d1vhna_ 135 KNEVEEIYRILVEEGVDEVFIHTRTVVQSFTGRAEWKALSVLEK--RIPTFVSGDIFTPEDAKRALEESGCDGLLVARGA 212 (305)
T ss_dssp SCCHHHHHHHHHHTTCCEEEEESSCTTTTTSSCCCGGGGGGSCC--SSCEEEESSCCSHHHHHHHHHHHCCSEEEESGGG
T ss_pred cchhhHHHHHHHHhCCcEEEechhhhhhccccchhhhHHHhhhh--hhhhhcccccccHHHHHHHHHhcCCCeEehhHHH
Confidence 344556666666679999999775322 2346777887766 6999999999 7899998884 9999999765
Q ss_pred eec
Q psy9039 244 KQG 246 (251)
Q Consensus 244 ~~~ 246 (251)
..+
T Consensus 213 l~n 215 (305)
T d1vhna_ 213 IGR 215 (305)
T ss_dssp TTC
T ss_pred HHh
Confidence 543
|
| >d1jr1a1 c.1.5.1 (A:17-112,A:233-514) Inosine monophosphate dehydrogenase (IMPDH) {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=96.45 E-value=0.0023 Score=56.66 Aligned_cols=70 Identities=13% Similarity=0.194 Sum_probs=49.7
Q ss_pred HHHHHHhhhccccEEEecCCCCCC----------CCCH---HHHHHHHhcCCCCEEEecCC-ChHhHHHhhc--CCEEEE
Q psy9039 176 TETAKAASFFLSDGLIITGNATGD----------PADV---SQLMSVKNAVDLPILIGSGV-TSDNVEHYMT--ADALII 239 (251)
Q Consensus 176 ~~~a~~a~~~~~D~v~VTG~~~g~----------~~~~---~~l~~vr~~~~~PV~vG~GI-~~~~v~~~~~--ADGvIV 239 (251)
.+.++.....|||++.|.+..-+. .+.+ .++.++++..++|||+-||| ++.++.+.+. ||+|.+
T Consensus 171 ~e~a~~L~~aGAD~VkVGiG~Gs~ctTr~~tGvG~pq~sai~~~~~~a~~~~vpIIADGGi~~~gdiakAla~GAd~VMm 250 (378)
T d1jr1a1 171 AAQAKNLIDAGVDALRVGMGCGSICITQEVLACGRPQATAVYKVSEYARRFGVPVIADGGIQNVGHIAKALALGASTVMM 250 (378)
T ss_dssp HHHHHHHHHHTCSEEEECSSCSTTBCHHHHHCCCCCHHHHHHHHHHHHGGGTCCEEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHhCCCEEeeccccccccccccccccCcccchhhhHHHHhhcccCCceecccccccCCceeeEEEeecceeee
Confidence 445555555799999886543221 1223 33445666678999999999 6888888885 999999
Q ss_pred eceEee
Q psy9039 240 GSHFKQ 245 (251)
Q Consensus 240 GS~~~~ 245 (251)
||.|..
T Consensus 251 Gs~fAg 256 (378)
T d1jr1a1 251 GSLLAA 256 (378)
T ss_dssp STTTTT
T ss_pred cceeee
Confidence 998863
|
| >d1hg3a_ c.1.1.1 (A:) Triosephosphate isomerase {Archaeon Pyrococcus woesei [TaxId: 2262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Triosephosphate isomerase (TIM) family: Triosephosphate isomerase (TIM) domain: Triosephosphate isomerase species: Archaeon Pyrococcus woesei [TaxId: 2262]
Probab=96.31 E-value=0.0012 Score=53.99 Aligned_cols=43 Identities=16% Similarity=0.399 Sum_probs=31.5
Q ss_pred HHHHHhcC-CCCEEEecCCCh-HhHHHhhc--CCEEEEeceEeecCe
Q psy9039 206 LMSVKNAV-DLPILIGSGVTS-DNVEHYMT--ADALIIGSHFKQGGR 248 (251)
Q Consensus 206 l~~vr~~~-~~PV~vG~GI~~-~~v~~~~~--ADGvIVGS~~~~~g~ 248 (251)
++.+++.. ++||+.||||++ +++..++. +||+.|||++.+-.+
T Consensus 166 i~~i~~~~~~v~vlygGsV~~~n~~~~~~~~g~dGvLVGsAsl~a~d 212 (224)
T d1hg3a_ 166 VELVKKVNPEVKVLCGAGISTGEDVKKAIELGTVGVLLASGVTKAKD 212 (224)
T ss_dssp HHHHHHHCTTSEEEEESSCCSHHHHHHHHHTTCSEEEESHHHHTCSS
T ss_pred hhhhhhhccccceEEeCCcCCHHHHHHHHhCCCCEEEEcceeecCcC
Confidence 44555443 789999999964 55665554 999999999876443
|
| >d1piia1 c.1.2.4 (A:255-452) N-(5'phosphoribosyl)antranilate isomerase, PRAI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: N-(5'phosphoribosyl)antranilate isomerase, PRAI species: Escherichia coli [TaxId: 562]
Probab=96.28 E-value=0.00048 Score=55.71 Aligned_cols=60 Identities=20% Similarity=0.223 Sum_probs=43.3
Q ss_pred cccEEEecC--CCCCCCCCHHHHHHHHhcCCCCEEEecCCChHhHHHhhc--CCEEEEeceEeec-Ce
Q psy9039 186 LSDGLIITG--NATGDPADVSQLMSVKNAVDLPILIGSGVTSDNVEHYMT--ADALIIGSHFKQG-GR 248 (251)
Q Consensus 186 ~~D~v~VTG--~~~g~~~~~~~l~~vr~~~~~PV~vG~GI~~~~v~~~~~--ADGvIVGS~~~~~-g~ 248 (251)
.+|.+..-+ ..+|..-+++.+. .....|++++|||+++|+.++++ ..|+=|-|.+... |.
T Consensus 118 ~~d~~lld~~~gGtG~~fdw~~~~---~~~~~~~~LAGGl~~~Nv~~a~~~~p~gvDvsSGvE~~pG~ 182 (198)
T d1piia1 118 HVDKYVLDNGQGGSGQRFDWSLLN---GQSLGNVLLAGGLGADNCVEAAQTGCAGLDFNSAVESQPGI 182 (198)
T ss_dssp TCCEEEEESCSCCSSCCCCGGGGT---TSCCTTEEEESSCCTTTHHHHHTTCCSEEEECGGGEEETTE
T ss_pred hhcccccCCcccccceeeehhhhc---ccccceeEEecCCCHHHHHHHHhcCCCEEEeCCcccCCCCC
Confidence 466665522 2344444666543 44567999999999999999986 9999999998765 54
|
| >d1v5xa_ c.1.2.4 (A:) N-(5'phosphoribosyl)antranilate isomerase, PRAI {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: N-(5'phosphoribosyl)antranilate isomerase, PRAI species: Thermus thermophilus [TaxId: 274]
Probab=96.27 E-value=0.0011 Score=53.55 Aligned_cols=63 Identities=16% Similarity=0.341 Sum_probs=42.2
Q ss_pred ccccEEEecCCCC--CCCCCHHHHHHHHhcCCCCEEEecCCChHhHHHhhc--CCEEEEeceEee-cCe
Q psy9039 185 FLSDGLIITGNAT--GDPADVSQLMSVKNAVDLPILIGSGVTSDNVEHYMT--ADALIIGSHFKQ-GGR 248 (251)
Q Consensus 185 ~~~D~v~VTG~~~--g~~~~~~~l~~vr~~~~~PV~vG~GI~~~~v~~~~~--ADGvIVGS~~~~-~g~ 248 (251)
+.+|++.+-.... |...+.+....... ...|++++|||+++|+.+++. ..|+=|-|.+.. .|.
T Consensus 116 ~~~~~~L~D~~~~g~g~~~~~~~~~~~~~-~~~~~~LAGGl~~~Nv~~~~~~~p~gvDvsSGvE~~~G~ 183 (200)
T d1v5xa_ 116 YPAQALLLDGKRPGSGEAYPRAWAKPLLA-TGRRVILAGGIAPENLEEVLALRPYALDLASGVEEAPGV 183 (200)
T ss_dssp SSCSEEEEECSSTTSCCCCCGGGGHHHHH-TTSCEEECSSCCSTTHHHHHHHCCSEEEESGGGEEETTE
T ss_pred cchhheeecccccCcccccchHHHhhhhh-ccCceEecCCCCHHHHHHHHhcCCCEEEEcCceECCCCc
Confidence 4577776544332 22233333222222 357999999999999999987 999999999874 564
|
| >d1w0ma_ c.1.1.1 (A:) Triosephosphate isomerase {Thermoproteus tenax [TaxId: 2271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Triosephosphate isomerase (TIM) family: Triosephosphate isomerase (TIM) domain: Triosephosphate isomerase species: Thermoproteus tenax [TaxId: 2271]
Probab=96.25 E-value=0.00089 Score=55.05 Aligned_cols=40 Identities=13% Similarity=0.298 Sum_probs=29.6
Q ss_pred HHHHHhcC-CCCEEEecCCChHhH-HHhhc--CCEEEEeceEee
Q psy9039 206 LMSVKNAV-DLPILIGSGVTSDNV-EHYMT--ADALIIGSHFKQ 245 (251)
Q Consensus 206 l~~vr~~~-~~PV~vG~GI~~~~v-~~~~~--ADGvIVGS~~~~ 245 (251)
++.+++.. ++||+.||||+.+|. ..++. +||+.|||++.+
T Consensus 164 i~~~~~~~~~i~vlygGgV~~~n~~~~~~~~g~dGvLVGsA~l~ 207 (226)
T d1w0ma_ 164 VGLVSRHFPEVSVITGAGIESGDDVAAALRLGTRGVLLASAAVK 207 (226)
T ss_dssp HHHHHHHCTTSEEEEESSCCSHHHHHHHHHTTCSEEEECHHHHT
T ss_pred hhhhhccCCCceEEEecCcCChHHHHHHhcCCCCEEEechheec
Confidence 34444443 799999999976554 44443 999999999875
|
| >d1ka9f_ c.1.2.1 (F:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Thermus thermophilus [TaxId: 274]
Probab=96.12 E-value=0.0019 Score=53.80 Aligned_cols=70 Identities=20% Similarity=0.254 Sum_probs=51.6
Q ss_pred HHHHHhhhccccEEEecCC---CCCCCCCHHHHHHHHhcCCCCEEEecCC-ChHhHHHhhc--CCEEEEeceEeec
Q psy9039 177 ETAKAASFFLSDGLIITGN---ATGDPADVSQLMSVKNAVDLPILIGSGV-TSDNVEHYMT--ADALIIGSHFKQG 246 (251)
Q Consensus 177 ~~a~~a~~~~~D~v~VTG~---~~g~~~~~~~l~~vr~~~~~PV~vG~GI-~~~~v~~~~~--ADGvIVGS~~~~~ 246 (251)
+.|+.-...|+|-+.+.-- ..+.....+.++++.+.+.+|+.+|||| +.+++..++. ||=+++||...++
T Consensus 34 ~~a~~~~~~g~dei~iiDl~~~~~~~~~~~~~i~~i~~~~~~pi~vgGGIrs~e~~~~ll~~Ga~kVii~s~~~~n 109 (251)
T d1ka9f_ 34 EAARAYDEAGADELVFLDISATHEERAILLDVVARVAERVFIPLTVGGGVRSLEDARKLLLSGADKVSVNSAAVRR 109 (251)
T ss_dssp HHHHHHHHHTCSCEEEEECCSSTTCHHHHHHHHHHHHTTCCSCEEEESSCCSHHHHHHHHHHTCSEEEECHHHHHC
T ss_pred HHHHHHHHcCCCEEEEEecccccccchhHHHHHHHHHhccCcchheeccccCHHHHHHHHHcCCCEEEECchhhhC
Confidence 3344333358888877543 2222234567888888889999999999 6899999997 9999999987655
|
| >d1vcfa1 c.1.4.1 (A:23-332) Isopentenyl-diphosphate delta-isomerase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Isopentenyl-diphosphate delta-isomerase species: Thermus thermophilus [TaxId: 274]
Probab=96.12 E-value=0.005 Score=51.79 Aligned_cols=70 Identities=19% Similarity=0.290 Sum_probs=50.8
Q ss_pred HHHHHHhhhccccEEEecCCCCCC----------------------CCCHHHHHHHHhcC-CCCEEEecCC-ChHhHHHh
Q psy9039 176 TETAKAASFFLSDGLIITGNATGD----------------------PADVSQLMSVKNAV-DLPILIGSGV-TSDNVEHY 231 (251)
Q Consensus 176 ~~~a~~a~~~~~D~v~VTG~~~g~----------------------~~~~~~l~~vr~~~-~~PV~vG~GI-~~~~v~~~ 231 (251)
.+.++.+...|+|++.|+|..-.. .+..+.+.++++.. ++||++-||| +..++.++
T Consensus 173 ~e~a~~~~~aGvd~i~vsn~gg~~~~~~~~~~~~~~~~~~~~~~~g~~~~~al~~~~~~~~~i~Ii~dGGIr~g~Dv~KA 252 (310)
T d1vcfa1 173 REAALALRDLPLAAVDVAGAGGTSWARVEEWVRFGEVRHPELCEIGIPTARAILEVREVLPHLPLVASGGVYTGTDGAKA 252 (310)
T ss_dssp HHHHHHHTTSCCSEEECCCBTSCCHHHHHHTC--------CCTTCSCBHHHHHHHHHHHCSSSCEEEESSCCSHHHHHHH
T ss_pred HHHHHHHHHcCCCEEEeccccccchhhcccccccCchhhhhhhhcchHHHHHHHHHHhhcCCCeEEeCCCCCchHHHHHH
Confidence 455566666799999998752210 11234455566554 7999999999 78998888
Q ss_pred hc--CCEEEEeceEee
Q psy9039 232 MT--ADALIIGSHFKQ 245 (251)
Q Consensus 232 ~~--ADGvIVGS~~~~ 245 (251)
+. ||+|.+|+.|..
T Consensus 253 LalGAdaV~iGr~~l~ 268 (310)
T d1vcfa1 253 LALGADLLAVARPLLR 268 (310)
T ss_dssp HHHTCSEEEECGGGHH
T ss_pred HHhCCCEeeEhHHHHH
Confidence 86 999999998864
|
| >d1thfd_ c.1.2.1 (D:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Thermotoga maritima [TaxId: 2336]
Probab=96.10 E-value=0.0014 Score=54.60 Aligned_cols=64 Identities=16% Similarity=0.245 Sum_probs=49.8
Q ss_pred hccccEEEecCC---CCCCCCCHHHHHHHHhcCCCCEEEecCC-ChHhHHHhhc--CCEEEEeceEeecC
Q psy9039 184 FFLSDGLIITGN---ATGDPADVSQLMSVKNAVDLPILIGSGV-TSDNVEHYMT--ADALIIGSHFKQGG 247 (251)
Q Consensus 184 ~~~~D~v~VTG~---~~g~~~~~~~l~~vr~~~~~PV~vG~GI-~~~~v~~~~~--ADGvIVGS~~~~~g 247 (251)
..|+|-+.+.-- ..+.....+.+.++.+.+++|+.+|||| +.+++..++. ||=+++||...+|-
T Consensus 41 ~~g~dei~ivDld~~~~~~~~~~~~i~~i~~~~~~pi~vgGGIr~~e~i~~~l~~Ga~kviigs~~~~n~ 110 (253)
T d1thfd_ 41 EIGIDELVFLDITASVEKRKTMLELVEKVAEQIDIPFTVGGGIHDFETASELILRGADKVSINTAAVENP 110 (253)
T ss_dssp HTTCCEEEEEESSCSSSHHHHHHHHHHHHHTTCCSCEEEESSCCSHHHHHHHHHTTCSEEEESHHHHHCT
T ss_pred HcCCCEEEEEeecccccCcccHHHHHHHHHhccCccceeecccccchhhhhHHhcCCCEEEEChHHhhCh
Confidence 358888877443 2222234577888888899999999999 6899999996 99999999887764
|
| >d1gwja_ c.1.4.1 (A:) Morphinone reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Morphinone reductase species: Pseudomonas putida [TaxId: 303]
Probab=96.03 E-value=0.0017 Score=57.34 Aligned_cols=65 Identities=9% Similarity=-0.037 Sum_probs=47.6
Q ss_pred ccccEEEecCCCCCC---CCCHHHHHHHHhcCCCCEEEecCCChHhHHHhhc---CCEEEEeceEeecCee
Q psy9039 185 FLSDGLIITGNATGD---PADVSQLMSVKNAVDLPILIGSGVTSDNVEHYMT---ADALIIGSHFKQGGRT 249 (251)
Q Consensus 185 ~~~D~v~VTG~~~g~---~~~~~~l~~vr~~~~~PV~vG~GI~~~~v~~~~~---ADGvIVGS~~~~~g~~ 249 (251)
.++|.+-++....-. .......+++|+.+++||++.|+++++.+.+++. ||.|-+|-.|+.|-+|
T Consensus 264 ~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pvi~~G~i~~~~ae~~l~~g~aDlV~~gR~~iadPd~ 334 (374)
T d1gwja_ 264 RGLAYLHFNEPDWIGGDITYPEGFREQMRQRFKGGLIYCGNYDAGRAQARLDDNTADAVAFGRPFIANPDL 334 (374)
T ss_dssp HTCSEEEEECSCBTTBCCCCCTTHHHHHHHHCCSEEEEESSCCHHHHHHHHHTTSCSEEEESHHHHHCTTH
T ss_pred cCceEEEeccCcccCCCcchhHHHHHHHHHHcCCCEEEECCcCHHHHHHHHHcCCCcEehhhHHHHHCccH
Confidence 467777666543211 1122345678999999999999999999888884 9999999988776443
|
| >d1h5ya_ c.1.2.1 (A:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=95.79 E-value=0.0024 Score=53.22 Aligned_cols=65 Identities=20% Similarity=0.340 Sum_probs=49.8
Q ss_pred hccccEEEecC---CCCCCCCCHHHHHHHHhcCCCCEEEecCC-ChHhHHHhhc--CCEEEEeceEeecCe
Q psy9039 184 FFLSDGLIITG---NATGDPADVSQLMSVKNAVDLPILIGSGV-TSDNVEHYMT--ADALIIGSHFKQGGR 248 (251)
Q Consensus 184 ~~~~D~v~VTG---~~~g~~~~~~~l~~vr~~~~~PV~vG~GI-~~~~v~~~~~--ADGvIVGS~~~~~g~ 248 (251)
..|+|-+.+.- ...+.....+.++++.+.+.+|+.+|||| +.+++..++. ||=+++||...++-+
T Consensus 43 ~~gadei~ivDl~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGIr~~e~~~~ll~~G~~kVii~s~~~~~~~ 113 (252)
T d1h5ya_ 43 EEGADEIAILDITAAPEGRATFIDSVKRVAEAVSIPVLVGGGVRSLEDATTLFRAGADKVSVNTAAVRNPQ 113 (252)
T ss_dssp HTTCSCEEEEECCCCTTTHHHHHHHHHHHHHHCSSCEEEESSCCSHHHHHHHHHHTCSEEEESHHHHHCTH
T ss_pred HCCCCEEEEEeccccccccccHHHHHHHHHhhcCCcceeecccchhhhhhhHhhcCCcEEEecccccCCcc
Confidence 35888776653 32222334577888888899999999999 6899999996 999999998776643
|
| >d1icpa_ c.1.4.1 (A:) 12-oxophytodienoate reductase (OPR, OYE homolog) {Tomato (Lycopersicon esculentum), OPR1 [TaxId: 4081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: 12-oxophytodienoate reductase (OPR, OYE homolog) species: Tomato (Lycopersicon esculentum), OPR1 [TaxId: 4081]
Probab=95.49 E-value=0.021 Score=49.70 Aligned_cols=45 Identities=16% Similarity=0.294 Sum_probs=37.0
Q ss_pred HHHHHHHhcCCCCEEEecCCChHhHHHhhc---CCEEEEeceEeecCe
Q psy9039 204 SQLMSVKNAVDLPILIGSGVTSDNVEHYMT---ADALIIGSHFKQGGR 248 (251)
Q Consensus 204 ~~l~~vr~~~~~PV~vG~GI~~~~v~~~~~---ADGvIVGS~~~~~g~ 248 (251)
+....+|+.++.|+++++|++++++.+++. ||.|-+|-.|+-|-+
T Consensus 282 ~~~~~i~~~~~~~vi~~g~~~~~~ae~~l~~g~aD~V~~gR~~iadPd 329 (364)
T d1icpa_ 282 ESLVPMRKAYKGTFIVAGGYDREDGNRALIEDRADLVAYGRLFISNPD 329 (364)
T ss_dssp CCSHHHHHHCCSCEEEESSCCHHHHHHHHHTTSCSEEEESHHHHHCTT
T ss_pred HHHHHHHHhcCCCEEEECCCCHHHHHHHHHcCCCceehhHHHHHHCcc
Confidence 335567888899999999999999888883 999999988876643
|
| >d1znna1 c.1.2.6 (A:18-271) Pyridoxal biosynthesis lyase PdxS {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: PdxS-like domain: Pyridoxal biosynthesis lyase PdxS species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.45 E-value=0.0054 Score=50.71 Aligned_cols=47 Identities=26% Similarity=0.346 Sum_probs=38.3
Q ss_pred CCHHHHHHHHhc--CCCCEEEecCC-ChHhHHHhhc--CCEEEEeceEeecC
Q psy9039 201 ADVSQLMSVKNA--VDLPILIGSGV-TSDNVEHYMT--ADALIIGSHFKQGG 247 (251)
Q Consensus 201 ~~~~~l~~vr~~--~~~PV~vG~GI-~~~~v~~~~~--ADGvIVGS~~~~~g 247 (251)
...+++.++++. .++|+++.+|| ||.+++.+++ |||+.|||++-+-+
T Consensus 174 ~p~~l~~~v~~~g~l~v~~~~~~Gi~tpadaa~~MelG~dgV~v~s~I~~s~ 225 (254)
T d1znna1 174 APVEVLREIKRLGRLPVVNFAAGGVTTPADAALMMHLGADGVFVGSGIFKSE 225 (254)
T ss_dssp CCHHHHHHHHHHTSCSSEEEEESSCCSHHHHHHHHHTTCSEEEECGGGGGSS
T ss_pred CchHHHHHHHHhCCCCceEEecCCCCChhhHHHHHHcCCCEEEEcchhhcCC
Confidence 345677777754 58999999999 8999998887 99999999986643
|
| >d1jvna1 c.1.2.1 (A:230-552) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Baker's yeast (Saccharomyces cerevisiae), His7 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Baker's yeast (Saccharomyces cerevisiae), His7 [TaxId: 4932]
Probab=95.30 E-value=0.0096 Score=51.46 Aligned_cols=61 Identities=20% Similarity=0.247 Sum_probs=44.5
Q ss_pred ccccEEEe---cCCCCCCCC---CHHHHHHHHhcCCCCEEEecCC-Ch-----------HhHHHhhc--CCEEEEeceEe
Q psy9039 185 FLSDGLII---TGNATGDPA---DVSQLMSVKNAVDLPILIGSGV-TS-----------DNVEHYMT--ADALIIGSHFK 244 (251)
Q Consensus 185 ~~~D~v~V---TG~~~g~~~---~~~~l~~vr~~~~~PV~vG~GI-~~-----------~~v~~~~~--ADGvIVGS~~~ 244 (251)
.|||-+.+ ++++.+... ..+.++++.+.+.+|+-+|||| +- +++++++. ||=|++||+.+
T Consensus 60 ~gaDeL~ivDidas~~~~~~~~~~~~~I~~i~~~~~vPi~vGGGIrsi~di~~~~~~~~e~A~~ll~~GadKVvI~T~ai 139 (323)
T d1jvna1 60 QGADEVTFLNITSFRDCPLKDTPMLEVLKQAAKTVFVPLTVGGGIKDIVDVDGTKIPALEVASLYFRSGADKVSIGTDAV 139 (323)
T ss_dssp TTCSEEEEEEEC---CCCGGGCHHHHHHHHHTTTCCSCEEEESSCSCEECTTCCEECHHHHHHHHHHHTCSEEEECHHHH
T ss_pred CCCCEEEEEECcCCCCCcCCCchHHHHHHhhccccceeEEEecCcccHHHhhhccchhhHHHHHHHHcCCCeEEechHHh
Confidence 58888865 555444332 3577888888899999999999 53 44678886 99999999875
Q ss_pred e
Q psy9039 245 Q 245 (251)
Q Consensus 245 ~ 245 (251)
+
T Consensus 140 ~ 140 (323)
T d1jvna1 140 Y 140 (323)
T ss_dssp H
T ss_pred h
Confidence 3
|
| >d1p0ka_ c.1.4.1 (A:) Isopentenyl-diphosphate delta-isomerase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Isopentenyl-diphosphate delta-isomerase species: Bacillus subtilis [TaxId: 1423]
Probab=95.18 E-value=0.011 Score=50.31 Aligned_cols=69 Identities=13% Similarity=0.168 Sum_probs=46.0
Q ss_pred HHHHHHhhhccccEEEecCCCCCC--------------------CCCHHHHHHHHhcC-CCCEEEecCC-ChHhHHHhhc
Q psy9039 176 TETAKAASFFLSDGLIITGNATGD--------------------PADVSQLMSVKNAV-DLPILIGSGV-TSDNVEHYMT 233 (251)
Q Consensus 176 ~~~a~~a~~~~~D~v~VTG~~~g~--------------------~~~~~~l~~vr~~~-~~PV~vG~GI-~~~~v~~~~~ 233 (251)
.+.++.+...|+|++.|+|..-.. .+....+.+++... ++||++-||| +..++.+.+.
T Consensus 172 ~~~a~~~~~~GaD~i~v~~~gG~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~v~viadGGIr~g~Dv~KAla 251 (329)
T d1p0ka_ 172 KASAGKLYEAGAAAVDIGGYGGTNFSKIENLRRQRQISFFNSWGISTAASLAEIRSEFPASTMIASGGLQDALDVAKAIA 251 (329)
T ss_dssp HHHHHHHHHHTCSEEEEEC---------------CCGGGGTTCSCCHHHHHHHHHHHCTTSEEEEESSCCSHHHHHHHHH
T ss_pred HHHHHHHHhcCCCEEEEcCCCCCCccccchhhcccCccchhHhHHHHHHHHHHHHhhcCCceEEEcCCcccHHHHHHHHH
Confidence 344445555699999998742110 01233444444443 7999999999 7888888885
Q ss_pred --CCEEEEeceEe
Q psy9039 234 --ADALIIGSHFK 244 (251)
Q Consensus 234 --ADGvIVGS~~~ 244 (251)
||+|.+|+.|.
T Consensus 252 lGAdaV~iGr~~l 264 (329)
T d1p0ka_ 252 LGASCTGMAGHFL 264 (329)
T ss_dssp TTCSEEEECHHHH
T ss_pred cCCCchhccHHHH
Confidence 99999999764
|
| >d1eepa_ c.1.5.1 (A:) Inosine monophosphate dehydrogenase (IMPDH) {Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]
Probab=94.96 E-value=0.019 Score=50.68 Aligned_cols=62 Identities=21% Similarity=0.314 Sum_probs=47.6
Q ss_pred HHHhhhccccEEEecCCCCCCCCC-HHHHHHHHhcC-CCCEEEecCCChHhHHHhhc--CCEEEEec
Q psy9039 179 AKAASFFLSDGLIITGNATGDPAD-VSQLMSVKNAV-DLPILIGSGVTSDNVEHYMT--ADALIIGS 241 (251)
Q Consensus 179 a~~a~~~~~D~v~VTG~~~g~~~~-~~~l~~vr~~~-~~PV~vG~GI~~~~v~~~~~--ADGvIVGS 241 (251)
+......|+|.+++-.++ |.... .+.++++|+.. ++||++|.=.|++.+.++++ ||++.||-
T Consensus 156 a~~L~~aG~D~ivID~Ah-G~s~~~~~~i~~ik~~~~~v~vIaGNV~T~e~a~~L~~~GaD~VkVGi 221 (388)
T d1eepa_ 156 VEELVKAHVDILVIDSAH-GHSTRIIELIKKIKTKYPNLDLIAGNIVTKEAALDLISVGADCLKVGI 221 (388)
T ss_dssp HHHHHHTTCSEEEECCSC-CSSHHHHHHHHHHHHHCTTCEEEEEEECSHHHHHHHHTTTCSEEEECS
T ss_pred HHHHHhhccceeeeeccc-cchHHHHHHHHHHHHHCCCCceeeccccCHHHHHHHHhcCCCeeeecc
Confidence 333344699999998876 44333 47788888765 89988877779999999997 99999983
|
| >d1vzwa1 c.1.2.1 (A:2-240) Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA species: Streptomyces coelicolor [TaxId: 1902]
Probab=94.29 E-value=0.014 Score=47.75 Aligned_cols=61 Identities=13% Similarity=0.237 Sum_probs=47.4
Q ss_pred ccccEEEec---CCCCCCCCCHHHHHHHHhcCCCCEEEecCC-ChHhHHHhhc--CCEEEEeceEeec
Q psy9039 185 FLSDGLIIT---GNATGDPADVSQLMSVKNAVDLPILIGSGV-TSDNVEHYMT--ADALIIGSHFKQG 246 (251)
Q Consensus 185 ~~~D~v~VT---G~~~g~~~~~~~l~~vr~~~~~PV~vG~GI-~~~~v~~~~~--ADGvIVGS~~~~~ 246 (251)
.|+|-+.+. +.. +.....+.++++.+.+.+|+-+|||| +.+++.+++. ||-+++||....+
T Consensus 43 ~ga~~l~i~DLd~~~-~~~~~~~~i~~i~~~~~~pi~vGGGIrs~~~~~~ll~~Ga~kVvi~s~~~~~ 109 (239)
T d1vzwa1 43 SGAEWLHLVDLDAAF-GTGDNRALIAEVAQAMDIKVELSGGIRDDDTLAAALATGCTRVNLGTAALET 109 (239)
T ss_dssp TTCSEEEEEEHHHHH-TSCCCHHHHHHHHHHCSSEEEEESSCCSHHHHHHHHHTTCSEEEECHHHHHC
T ss_pred cCCCEEEEEeecccc-cccchHHHHHHHHhhcCcceEeecccccchhhhhhhccccccchhhHHhhhc
Confidence 466666553 332 23446788999988889999999999 6899999986 9999999987655
|
| >d1tb3a1 c.1.4.1 (A:1-349) Hydroxyacid oxidase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Hydroxyacid oxidase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=94.08 E-value=0.024 Score=48.95 Aligned_cols=68 Identities=22% Similarity=0.350 Sum_probs=51.4
Q ss_pred HHHHHhhhccccEEEecCCCC----CCCCCHHHHHHHHhcC--CCCEEEecCC-ChHhHHHhhc--CCEEEEeceEe
Q psy9039 177 ETAKAASFFLSDGLIITGNAT----GDPADVSQLMSVKNAV--DLPILIGSGV-TSDNVEHYMT--ADALIIGSHFK 244 (251)
Q Consensus 177 ~~a~~a~~~~~D~v~VTG~~~----g~~~~~~~l~~vr~~~--~~PV~vG~GI-~~~~v~~~~~--ADGvIVGS~~~ 244 (251)
+-+..+...|+|++.|++..- +.++..+.+.++++.+ ++||++-||| +..++.+.+. ||.|-+|..|.
T Consensus 229 ~da~~a~~~G~d~i~vsnhggr~~d~~~~~~~~l~~i~~~~~~~~~iiadGGIR~G~Dv~KALALGA~~V~igrp~L 305 (349)
T d1tb3a1 229 EDAELAMKHNVQGIVVSNHGGRQLDEVSASIDALREVVAAVKGKIEVYMDGGVRTGTDVLKALALGARCIFLGRPIL 305 (349)
T ss_dssp HHHHHHHHTTCSEEEECCGGGTSSCSBCCHHHHHHHHHHHHTTSSEEEEESSCCSHHHHHHHHHTTCSCEEESHHHH
T ss_pred HHHHHHHHhhccceeeeccccccccccccchhhcceeeeccCCCeeEEeccCcCcHHHHHHHHHcCCCEEEEChHHH
Confidence 445566668999999998521 2233457777887765 6899999999 7888888886 99999997654
|
| >d1zfja1 c.1.5.1 (A:2-94,A:221-492) Inosine monophosphate dehydrogenase (IMPDH) {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Streptococcus pyogenes [TaxId: 1314]
Probab=94.03 E-value=0.018 Score=50.46 Aligned_cols=70 Identities=20% Similarity=0.264 Sum_probs=46.5
Q ss_pred HHHHHHhhhccccEEEec---------CCCCCCC-CCHHHHH---HHHhcCCCCEEEecCC-ChHhHHHhhc--CCEEEE
Q psy9039 176 TETAKAASFFLSDGLIIT---------GNATGDP-ADVSQLM---SVKNAVDLPILIGSGV-TSDNVEHYMT--ADALII 239 (251)
Q Consensus 176 ~~~a~~a~~~~~D~v~VT---------G~~~g~~-~~~~~l~---~vr~~~~~PV~vG~GI-~~~~v~~~~~--ADGvIV 239 (251)
.+.+......|||++-|- -..+|.. +.+..+. +.++...+|||+=||| ++.++.+.+. ||.|.+
T Consensus 159 ~e~a~~L~~aGaD~VkVGiG~Gs~CTTr~~tGvGvPq~sai~~~~~~~~~~~~~iIADGGi~~~GDi~KAla~GAd~VMl 238 (365)
T d1zfja1 159 AEGARALYDAGVDVVKVGIGPGSICTTRVVAGVGVPQVTAIYDAAAVAREYGKTIIADGGIKYSGDIVKALAAGGNAVML 238 (365)
T ss_dssp HHHHHHHHHTTCSEEEECSSCCTTBCHHHHTCCCCCHHHHHHHHHHHHHHTTCEEEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHhcCCceEEeeecccccccCcceeeeeccchhHHHHHHHHHHhCCceEEecCCcCcchhhhhhhhccCCEEEe
Confidence 444555555699998552 2223322 2334443 4445568999999999 6888887775 999999
Q ss_pred eceEee
Q psy9039 240 GSHFKQ 245 (251)
Q Consensus 240 GS~~~~ 245 (251)
||.|-.
T Consensus 239 G~~lAg 244 (365)
T d1zfja1 239 GSMFAG 244 (365)
T ss_dssp STTTTT
T ss_pred cchhcc
Confidence 998743
|
| >d7reqa2 c.23.6.1 (A:561-728) Methylmalonyl-CoA mutase alpha subunit, C-terminal domain {Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Cobalamin (vitamin B12)-binding domain family: Cobalamin (vitamin B12)-binding domain domain: Methylmalonyl-CoA mutase alpha subunit, C-terminal domain species: Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]
Probab=93.74 E-value=0.036 Score=43.23 Aligned_cols=66 Identities=17% Similarity=0.064 Sum_probs=47.0
Q ss_pred CcccHHHHHHHhhhccccEEEecCCCCCCCCCH-HHHHHHHhc--CCCCEEEecCCChHhHHHhhc--CCE
Q psy9039 171 ADVDITETAKAASFFLSDGLIITGNATGDPADV-SQLMSVKNA--VDLPILIGSGVTSDNVEHYMT--ADA 236 (251)
Q Consensus 171 ~~~~i~~~a~~a~~~~~D~v~VTG~~~g~~~~~-~~l~~vr~~--~~~PV~vG~GI~~~~v~~~~~--ADG 236 (251)
...+.+++++.+....+|.+++|...+...+.. +.++++|+. .++||++||=|.+++..++.+ .|.
T Consensus 73 ~~~~~e~iv~aa~~~~advI~iSs~~~~~~~~~~~l~~~L~~~g~~~v~VivGG~ip~~d~~~l~~~Gv~~ 143 (168)
T d7reqa2 73 LFQTPEETARQAVEADVHVVGVSSLAGGHLTLVPALRKELDKLGRPDILITVGGVIPEQDFDELRKDGAVE 143 (168)
T ss_dssp TTBCHHHHHHHHHHHTCSEEEEEECSSCHHHHHHHHHHHHHHTTCTTSEEEEEESCCGGGHHHHHHHTEEE
T ss_pred CcCcHHHHHHHHHccCCCEEEEecCcccchHHHHHHHHHHHhcCCCCeEEEEeCCCCHHHHHHHHhCCCCE
Confidence 446788888888888999999997765444444 456677776 368888777667777777664 554
|
| >d1qo2a_ c.1.2.1 (A:) Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA species: Thermotoga maritima [TaxId: 2336]
Probab=93.70 E-value=0.016 Score=47.44 Aligned_cols=62 Identities=15% Similarity=0.122 Sum_probs=43.9
Q ss_pred ccccEEEe---cCCCCCCCCCHHHHHHHHhcCCCCEEEecCC-ChHhHHHhhc--CCEEEEeceEeecC
Q psy9039 185 FLSDGLII---TGNATGDPADVSQLMSVKNAVDLPILIGSGV-TSDNVEHYMT--ADALIIGSHFKQGG 247 (251)
Q Consensus 185 ~~~D~v~V---TG~~~g~~~~~~~l~~vr~~~~~PV~vG~GI-~~~~v~~~~~--ADGvIVGS~~~~~g 247 (251)
.|+|-+.+ .+...+.+.....+..+++.+ .|+-+|||| +.+++..++. ||-++++|++.++-
T Consensus 42 ~g~~~l~ivDLda~~~~~~~~~~~~~~~~~~~-~pl~~gGGI~s~~~~~~~~~~Ga~kVvi~s~~~~~~ 109 (241)
T d1qo2a_ 42 EGFTLIHVVDLSNAIENSGENLPVLEKLSEFA-EHIQIGGGIRSLDYAEKLRKLGYRRQIVSSKVLEDP 109 (241)
T ss_dssp TTCCCEEEEEHHHHHHCCCTTHHHHHHGGGGG-GGEEEESSCCSHHHHHHHHHTTCCEEEECHHHHHCT
T ss_pred CCCCEEEEEecccccccCCcchhheehhcccc-cchhhhhhhhhhhhhhhccccccceEecCcccccCc
Confidence 35555533 233333444455666666654 799999999 6899999996 99999999887653
|
| >d1ccwa_ c.23.6.1 (A:) Glutamate mutase, small subunit {Clostridium cochlearium [TaxId: 1494]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Cobalamin (vitamin B12)-binding domain family: Cobalamin (vitamin B12)-binding domain domain: Glutamate mutase, small subunit species: Clostridium cochlearium [TaxId: 1494]
Probab=93.67 E-value=0.023 Score=42.77 Aligned_cols=53 Identities=13% Similarity=0.080 Sum_probs=40.2
Q ss_pred CcccHHHHHHHhhhccccEEEecCCCCCCCCCH-HHHHHHHhc--CCCCEEEecCC
Q psy9039 171 ADVDITETAKAASFFLSDGLIITGNATGDPADV-SQLMSVKNA--VDLPILIGSGV 223 (251)
Q Consensus 171 ~~~~i~~~a~~a~~~~~D~v~VTG~~~g~~~~~-~~l~~vr~~--~~~PV~vG~GI 223 (251)
.+.+.+++.+.+....+|.+++|...+...... +.++++|+. .++||++||++
T Consensus 39 ~~~p~e~iv~a~~~~~~d~v~lS~~~~~~~~~~~~~~~~l~~~~~~~i~iivGG~~ 94 (137)
T d1ccwa_ 39 VLSPQELFIKAAIETKADAILVSSLYGQGEIDCKGLRQKCDEAGLEGILLYVGGNI 94 (137)
T ss_dssp EEECHHHHHHHHHHHTCSEEEEEECSSTHHHHHTTHHHHHHHTTCTTCEEEEEESC
T ss_pred cccCHHHHHHHHHhcCCCEEEEeeccccchHHHHHHHHHHHHhccCCCEEEEeCCc
Confidence 456788888888888999999998866544333 445666665 37999999998
|
| >d1vc4a_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Indole-3-glycerophosphate synthase, IPGS species: Thermus thermophilus [TaxId: 274]
Probab=93.51 E-value=0.11 Score=43.03 Aligned_cols=91 Identities=22% Similarity=0.192 Sum_probs=62.7
Q ss_pred CCcchhhhhhHhhccCCC--CCCcccHHHHHHHhhhccccEEEe-cCCCCCCCCCHHHHHHHHhcCCCCEEEecCC-ChH
Q psy9039 151 ADNVLVFTDIKKKHSSHA--ITADVDITETAKAASFFLSDGLII-TGNATGDPADVSQLMSVKNAVDLPILIGSGV-TSD 226 (251)
Q Consensus 151 ~~~i~i~a~v~~k~~~~~--~~~~~~i~~~a~~a~~~~~D~v~V-TG~~~g~~~~~~~l~~vr~~~~~PV~vG~GI-~~~ 226 (251)
...+.+++++..+. |. ...+....++|+.-+..||+++-| |-. .-...+.+.+.++|+.+++||+.-=-| ++.
T Consensus 43 ~~~~~vIAEiKr~S--PS~G~i~~~dp~~~A~~y~~~GA~aiSVLTe~-~~F~Gs~~dl~~v~~~~~iPvLrKDFIid~~ 119 (254)
T d1vc4a_ 43 RPGLSVIAEVKRQS--PSEGLIREVDPVEAALAYARGGARAVSVLTEP-HRFGGSLLDLKRVREAVDLPLLRKDFVVDPF 119 (254)
T ss_dssp SSSCEEEEEECSCC--TTTCCCCSCCHHHHHHHHHHTTCSEEEEECCC-SSSCCCHHHHHHHHHHCCSCEEEESCCCSHH
T ss_pred cCCCeEEEEeeecC--CCCCccccCCHHHHHHHHHhcCCceEEEEcCc-ccccccHHHHHHHHHHcCCCcccCCccccHH
Confidence 34556776665442 21 122344555655444468999855 543 345667899999999999999999999 899
Q ss_pred hHHHhhc--CCEEEEeceEe
Q psy9039 227 NVEHYMT--ADALIIGSHFK 244 (251)
Q Consensus 227 ~v~~~~~--ADGvIVGS~~~ 244 (251)
|+.+... ||++..-.++.
T Consensus 120 QI~ea~~~GADaVLLIaall 139 (254)
T d1vc4a_ 120 MLEEARAFGASAALLIVALL 139 (254)
T ss_dssp HHHHHHHTTCSEEEEEHHHH
T ss_pred HHHHHHhccchHHHHHHHHH
Confidence 9988775 99998776653
|
| >d2b4ga1 c.1.4.1 (A:2-313) Dihydroorotate dehydrogenase {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydroorotate dehydrogenase species: Trypanosoma brucei [TaxId: 5691]
Probab=93.50 E-value=0.013 Score=49.78 Aligned_cols=45 Identities=13% Similarity=0.229 Sum_probs=36.9
Q ss_pred HHHHHHHHhcC-CCCEEEecCC-ChHhHHHhhc--CCEEEEeceEeecC
Q psy9039 203 VSQLMSVKNAV-DLPILIGSGV-TSDNVEHYMT--ADALIIGSHFKQGG 247 (251)
Q Consensus 203 ~~~l~~vr~~~-~~PV~vG~GI-~~~~v~~~~~--ADGvIVGS~~~~~g 247 (251)
++.+.++++.+ +.|++.+||| |.+++.+++. ||.|.++|+|+..|
T Consensus 230 l~~v~~~~~~~~~~~Iig~GGI~s~~Da~e~i~aGAs~Vqv~Tal~~~G 278 (312)
T d2b4ga1 230 LANVNAFFRRCPDKLVFGCGGVYSGEEAFLHILAGASMVQVGTALHDEG 278 (312)
T ss_dssp HHHHHHHHHHCTTSEEEEESSCCSHHHHHHHHHHTEEEEEESHHHHHHC
T ss_pred hHHHHHHHHHcCCCceeecCCcCCHHHHHHHHHcCCChheeehhhHhcC
Confidence 45677777666 6788899999 6899888885 99999999998765
|
| >d3bula2 c.23.6.1 (A:741-896) Methionine synthase, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Cobalamin (vitamin B12)-binding domain family: Cobalamin (vitamin B12)-binding domain domain: Methionine synthase, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=92.84 E-value=0.061 Score=41.28 Aligned_cols=76 Identities=12% Similarity=0.135 Sum_probs=50.4
Q ss_pred hhhhhhHhhccCCC--CCCcccHHHHHHHhhhccccEEEecCCCCCCCCCH-HHHHHHHhcC-CCCEEEecCC-ChHhHH
Q psy9039 155 LVFTDIKKKHSSHA--ITADVDITETAKAASFFLSDGLIITGNATGDPADV-SQLMSVKNAV-DLPILIGSGV-TSDNVE 229 (251)
Q Consensus 155 ~i~a~v~~k~~~~~--~~~~~~i~~~a~~a~~~~~D~v~VTG~~~g~~~~~-~~l~~vr~~~-~~PV~vG~GI-~~~~v~ 229 (251)
.+++.+...+|... ...+.+.+++.+.+....+|.+++|..-+...+.+ +.++.+++.- +.|+++|||. +.+..+
T Consensus 24 ~iv~~~l~~~G~~Vi~LG~~~p~e~~~~~~~~~~~d~i~lS~l~~~~~~~~~~~~~~l~~~g~~~~vivGG~~~~~~~~~ 103 (156)
T d3bula2 24 NIVGVVLQCNNYEIVDLGVMVPAEKILRTAKEVNADLIGLSGLITPSLDEMVNVAKEMERQGFTIPLLIGGATTSKAHTA 103 (156)
T ss_dssp HHHHHHHHTTTCEEEECCSSBCHHHHHHHHHHHTCSEEEEECCSTHHHHHHHHHHHHHHHTTCCSCEEEESTTCCHHHHH
T ss_pred HHHHHHHHHCCCEEEECCCCCCHHHHHHHHHhhCCCEEEEecccccchHHHHHHHHHHHhccccceEEEecccccchHHH
Confidence 44444444444222 35567888888888878899999998865433333 4456677653 7899999998 655544
Q ss_pred H
Q psy9039 230 H 230 (251)
Q Consensus 230 ~ 230 (251)
.
T Consensus 104 ~ 104 (156)
T d3bula2 104 V 104 (156)
T ss_dssp H
T ss_pred h
Confidence 3
|
| >d1trea_ c.1.1.1 (A:) Triosephosphate isomerase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Triosephosphate isomerase (TIM) family: Triosephosphate isomerase (TIM) domain: Triosephosphate isomerase species: Escherichia coli [TaxId: 562]
Probab=92.78 E-value=0.035 Score=46.13 Aligned_cols=31 Identities=19% Similarity=0.341 Sum_probs=27.8
Q ss_pred CCCEEEecCCChHhHHHhhc---CCEEEEeceEe
Q psy9039 214 DLPILIGSGVTSDNVEHYMT---ADALIIGSHFK 244 (251)
Q Consensus 214 ~~PV~vG~GI~~~~v~~~~~---ADGvIVGS~~~ 244 (251)
++||+-||+|+++|+.+++. .||+.||++-.
T Consensus 204 ~v~iLYGGSV~~~N~~~i~~~~~vdG~LVGgASl 237 (255)
T d1trea_ 204 QVIIQYGGSVNASNAAELFAQPDIDGALVGGASL 237 (255)
T ss_dssp HCEEEECSCCCTTTHHHHHTSTTCCEEEESGGGG
T ss_pred CccEEecCCcCHhHHHHHhcCCCCCEEEechhhc
Confidence 58999999999999999984 99999998743
|
| >d1eepa_ c.1.5.1 (A:) Inosine monophosphate dehydrogenase (IMPDH) {Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]
Probab=92.58 E-value=0.045 Score=48.13 Aligned_cols=70 Identities=23% Similarity=0.309 Sum_probs=46.4
Q ss_pred HHHHHHHhhhccccEEEe---------cCCCCCCC-CCHHHHH---HHHhcCCCCEEEecCC-ChHhHHHhhc--CCEEE
Q psy9039 175 ITETAKAASFFLSDGLII---------TGNATGDP-ADVSQLM---SVKNAVDLPILIGSGV-TSDNVEHYMT--ADALI 238 (251)
Q Consensus 175 i~~~a~~a~~~~~D~v~V---------TG~~~g~~-~~~~~l~---~vr~~~~~PV~vG~GI-~~~~v~~~~~--ADGvI 238 (251)
..+.++.....|||++-| |...+|.. +....+. +......+|||+=||| ++.++.+.+. ||.|.
T Consensus 202 T~e~a~~L~~~GaD~VkVGiGpGs~CtTr~~~GvG~pq~sai~~~~~~~~~~~vpiIADGGi~~~Gdi~KAla~GAd~VM 281 (388)
T d1eepa_ 202 TKEAALDLISVGADCLKVGIGPGSICTTRIVAGVGVPQITAICDVYEACNNTNICIIADGGIRFSGDVVKAIAAGADSVM 281 (388)
T ss_dssp SHHHHHHHHTTTCSEEEECSSCSTTSHHHHHHCCCCCHHHHHHHHHHHHTTSSCEEEEESCCCSHHHHHHHHHHTCSEEE
T ss_pred CHHHHHHHHhcCCCeeeeccccccccccccccccCcchHHHHHHHHHHhccCCceEEeccccCcCCceeeeEEeccceee
Confidence 344455555568999855 22222322 2233333 3444458999999999 6888888886 99999
Q ss_pred EeceEe
Q psy9039 239 IGSHFK 244 (251)
Q Consensus 239 VGS~~~ 244 (251)
+||.|-
T Consensus 282 lG~~lA 287 (388)
T d1eepa_ 282 IGNLFA 287 (388)
T ss_dssp ECHHHH
T ss_pred cchhhh
Confidence 999774
|
| >d1kv5a_ c.1.1.1 (A:) Triosephosphate isomerase {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Triosephosphate isomerase (TIM) family: Triosephosphate isomerase (TIM) domain: Triosephosphate isomerase species: Trypanosoma brucei [TaxId: 5691]
Probab=92.42 E-value=0.05 Score=44.99 Aligned_cols=29 Identities=24% Similarity=0.529 Sum_probs=26.8
Q ss_pred CCCEEEecCCChHhHHHhhc---CCEEEEece
Q psy9039 214 DLPILIGSGVTSDNVEHYMT---ADALIIGSH 242 (251)
Q Consensus 214 ~~PV~vG~GI~~~~v~~~~~---ADGvIVGS~ 242 (251)
++||+-||-++++|+.+++. .||+.||++
T Consensus 204 ~~~ilYGGSV~~~N~~~i~~~~~vDG~LVGgA 235 (249)
T d1kv5a_ 204 ELRILYGGSVNGKNARTLYQQRDVNGFLVGGA 235 (249)
T ss_dssp HCCEEEESSCCTTTHHHHHTSTTCCEEEESGG
T ss_pred CCcEEEcCCCCHhHHHHHhcCCCCCEEEechH
Confidence 48999999999999999994 999999976
|
| >d2btma_ c.1.1.1 (A:) Triosephosphate isomerase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Triosephosphate isomerase (TIM) family: Triosephosphate isomerase (TIM) domain: Triosephosphate isomerase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=92.26 E-value=0.063 Score=44.41 Aligned_cols=30 Identities=23% Similarity=0.534 Sum_probs=27.4
Q ss_pred CCCEEEecCCChHhHHHhhc---CCEEEEeceE
Q psy9039 214 DLPILIGSGVTSDNVEHYMT---ADALIIGSHF 243 (251)
Q Consensus 214 ~~PV~vG~GI~~~~v~~~~~---ADGvIVGS~~ 243 (251)
++||+-||.++++|+.+++. .||+.||++=
T Consensus 204 ~i~ilYGGSV~~~N~~~i~~~~~vDG~LVG~AS 236 (251)
T d2btma_ 204 AIRIQYGGSVKPDNIRDFLAQQQIDGALVGGAS 236 (251)
T ss_dssp TSEEEEESSCCTTTHHHHHTSTTCCEEEESGGG
T ss_pred cCcEEeeCCCCHhHHHHHhcCCCCCEEEechHh
Confidence 58999999999999999985 8999999863
|
| >d1o5xa_ c.1.1.1 (A:) Triosephosphate isomerase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Triosephosphate isomerase (TIM) family: Triosephosphate isomerase (TIM) domain: Triosephosphate isomerase species: Plasmodium falciparum [TaxId: 5833]
Probab=92.10 E-value=0.05 Score=44.94 Aligned_cols=32 Identities=22% Similarity=0.496 Sum_probs=28.5
Q ss_pred CCCEEEecCCChHhHHHhhc---CCEEEEeceEee
Q psy9039 214 DLPILIGSGVTSDNVEHYMT---ADALIIGSHFKQ 245 (251)
Q Consensus 214 ~~PV~vG~GI~~~~v~~~~~---ADGvIVGS~~~~ 245 (251)
++||+-||.++++|+.+++. .||+.||++=.+
T Consensus 201 ~i~ilYGGSV~~~N~~~i~~~~~idG~LVG~ASL~ 235 (246)
T d1o5xa_ 201 QIRILYGGSVNTENCSSLIQQEDIDGFLVGNASLK 235 (246)
T ss_dssp HSEEEECSCCCTTTHHHHHTSTTCCEEEECGGGGS
T ss_pred cccEEEeCCCCHhHHHHHhcCCCCCEEEeecccCC
Confidence 58999999999999999994 999999987544
|
| >d1km4a_ c.1.2.3 (A:) Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Decarboxylase domain: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=91.61 E-value=0.37 Score=38.09 Aligned_cols=164 Identities=18% Similarity=0.223 Sum_probs=87.4
Q ss_pred CCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChH---HH-HHHHHHcCccceeccc
Q psy9039 48 VGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNK---AA-LATAQAAGLDFIRAES 123 (251)
Q Consensus 48 ~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~---~~-~~ia~a~g~~Fir~~~ 123 (251)
..+ +++.+ |+||-.. -|+ ..++++++.++ .|+-+.+=.++-. .. .......|++++-++.
T Consensus 26 ~~v-~~iKi----g~~l~~~--~G~-------~~v~~l~~~~~--~~i~~D~K~~DIg~t~~~~~~~~~~~gad~~TVh~ 89 (212)
T d1km4a_ 26 EYI-DTVKI----GYPLVLS--EGM-------DIIAEFRKRFG--CRIIADFAVADIPETNEKICRATFKAGADAIIVHG 89 (212)
T ss_dssp TTC-SEEEE----EHHHHHH--HCT-------HHHHHHHHHHC--CEEEEEEEECSCHHHHHHHHHHHHHTTCSEEEEES
T ss_pred CCC-cEEEE----CHHHHHh--cCH-------HHHHHHHHhcc--cceehhhhhhccccHHHHhHhhhccccccEEEEec
Confidence 568 88875 5554432 243 35677777767 5766665555521 11 2222346788887754
Q ss_pred ccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHhhccCCCCCCcccHHHHHHHhhhccccEEEecCCCCCCCCCH
Q psy9039 124 FVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSSHAITADVDITETAKAASFFLSDGLIITGNATGDPADV 203 (251)
Q Consensus 124 ~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~~~~~D~v~VTG~~~g~~~~~ 203 (251)
+.| .+ . -....+..++.+. .+.+++..... +... .......+..+.+...+.+++++- ....
T Consensus 90 ~~g----~~-~----i~~~~~~a~~~~~-~~~~l~~~s~~-~~~~-~~~~~~~~~~~~~~~~g~~g~v~~------~~~~ 151 (212)
T d1km4a_ 90 FPG----AD-S----VRACLNVAEEMGR-EVFLLTEMSHP-GAEM-FIQGAADEIARMGVDLGVKNYVGP------STRP 151 (212)
T ss_dssp TTC----HH-H----HHHHHHHHHHHTC-EEEEECSCSSG-GGGT-THHHHHHHHHHHHHHHTCCEEECC------TTCH
T ss_pred cCC----hH-H----HHHHHHHHHhcCC-ccccchhhcch-hhhh-hhhhHHHHHHHHHHHhCCcccccc------ccCH
Confidence 333 11 1 2234455556654 34443211100 0000 001112222333333567765432 2346
Q ss_pred HHHHHHHhcC-CCCEEEecCCCh--HhHHHhhc-CCEEEEeceEee
Q psy9039 204 SQLMSVKNAV-DLPILIGSGVTS--DNVEHYMT-ADALIIGSHFKQ 245 (251)
Q Consensus 204 ~~l~~vr~~~-~~PV~vG~GI~~--~~v~~~~~-ADGvIVGS~~~~ 245 (251)
+.++++|+.. +..+++-.||.+ .+..+.++ ||.+|||+++-+
T Consensus 152 ~~i~~ir~~~~~~~~~vtpGI~~~g~~~~d~~~~ad~iIvGR~I~~ 197 (212)
T d1km4a_ 152 ERLSRLREIIGQDSFLISPGVGAQGGDPGETLRFADAIIVGRSIYL 197 (212)
T ss_dssp HHHHHHHHHHCSSSEEEECCBSTTSBCHHHHTTTCSEEEECHHHHT
T ss_pred HHHhhhhhccCCceeEEcCccccCCCCHHHHHhhCCEEEECchhcc
Confidence 6778888876 567788899964 34666667 999999998754
|
| >d1vrda1 c.1.5.1 (A:1-85,A:213-457) Inosine monophosphate dehydrogenase (IMPDH) {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Thermotoga maritima [TaxId: 2336]
Probab=91.47 E-value=0.15 Score=43.68 Aligned_cols=60 Identities=25% Similarity=0.372 Sum_probs=45.1
Q ss_pred HHhhhccccEEEecCCCCCCCCC-HHHHHHHHhcC-CCCEEEecCCChHhHHHhhc--CCEEEEe
Q psy9039 180 KAASFFLSDGLIITGNATGDPAD-VSQLMSVKNAV-DLPILIGSGVTSDNVEHYMT--ADALIIG 240 (251)
Q Consensus 180 ~~a~~~~~D~v~VTG~~~g~~~~-~~~l~~vr~~~-~~PV~vG~GI~~~~v~~~~~--ADGvIVG 240 (251)
+.....++|.+++..++ |.... .+.++++|+.. ++||++|-=.|++.+.++.+ ||++.||
T Consensus 104 ~~li~agvd~ivId~A~-G~~~~~~~~ik~ik~~~~~~~viaGnV~t~~~a~~l~~~GaD~v~VG 167 (330)
T d1vrda1 104 EKLVKAGVDVIVIDTAH-GHSRRVIETLEMIKADYPDLPVVAGNVATPEGTEALIKAGADAVKVG 167 (330)
T ss_dssp HHHHHTTCSEEEECCSC-CSSHHHHHHHHHHHHHCTTSCEEEEEECSHHHHHHHHHTTCSEEEEC
T ss_pred HHHHHCCCCEEEEecCC-CCchhHHHHHHHHHHhCCCCCEEeechhHHHHHHHHHHcCCCEEeec
Confidence 33334689999987664 33333 36788888765 79999888889999998875 9999997
|
| >d1neya_ c.1.1.1 (A:) Triosephosphate isomerase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Triosephosphate isomerase (TIM) family: Triosephosphate isomerase (TIM) domain: Triosephosphate isomerase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.07 E-value=0.068 Score=44.13 Aligned_cols=30 Identities=23% Similarity=0.490 Sum_probs=27.3
Q ss_pred CCCEEEecCCChHhHHHhhc---CCEEEEeceE
Q psy9039 214 DLPILIGSGVTSDNVEHYMT---ADALIIGSHF 243 (251)
Q Consensus 214 ~~PV~vG~GI~~~~v~~~~~---ADGvIVGS~~ 243 (251)
++||+-||.++++|+.+++. .||+.||++=
T Consensus 202 ~i~iLYGGSV~~~N~~~i~~~~~iDG~LVGgAS 234 (247)
T d1neya_ 202 ELRILYGGSANGSNAVTFKDKADVDGFLVGGAS 234 (247)
T ss_dssp HCCEEEESSCCTTTGGGGTTCTTCCEEEESGGG
T ss_pred cCcEEEeCCCCHHHHHHHhcCCCCCeEEeehHh
Confidence 48999999999999999995 8999999763
|
| >d1n55a_ c.1.1.1 (A:) Triosephosphate isomerase {Leishmania mexicana [TaxId: 5665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Triosephosphate isomerase (TIM) family: Triosephosphate isomerase (TIM) domain: Triosephosphate isomerase species: Leishmania mexicana [TaxId: 5665]
Probab=91.06 E-value=0.035 Score=46.00 Aligned_cols=29 Identities=24% Similarity=0.495 Sum_probs=26.9
Q ss_pred CCCEEEecCCChHhHHHhhc---CCEEEEece
Q psy9039 214 DLPILIGSGVTSDNVEHYMT---ADALIIGSH 242 (251)
Q Consensus 214 ~~PV~vG~GI~~~~v~~~~~---ADGvIVGS~ 242 (251)
++||+-||.++++|+.+++. .||+.||++
T Consensus 204 ~i~ilYGGSV~~~N~~~i~~~~~vdG~LVG~A 235 (249)
T d1n55a_ 204 KLRILYGGSVNAANAATLYAKPDINGFLVGGA 235 (249)
T ss_dssp HCEEEEESSCCTTTHHHHHTSTTCCEEEESGG
T ss_pred cccEEEcCCCCHhHHHHHhcCCCCCeEEeehh
Confidence 48999999999999999994 999999976
|
| >d1m6ja_ c.1.1.1 (A:) Triosephosphate isomerase {Entamoeba histolytica [TaxId: 5759]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Triosephosphate isomerase (TIM) family: Triosephosphate isomerase (TIM) domain: Triosephosphate isomerase species: Entamoeba histolytica [TaxId: 5759]
Probab=90.88 E-value=0.086 Score=43.75 Aligned_cols=30 Identities=20% Similarity=0.344 Sum_probs=27.3
Q ss_pred CCCEEEecCCChHhHHHhhc---CCEEEEeceE
Q psy9039 214 DLPILIGSGVTSDNVEHYMT---ADALIIGSHF 243 (251)
Q Consensus 214 ~~PV~vG~GI~~~~v~~~~~---ADGvIVGS~~ 243 (251)
++||+-||.++++|+.+++. .||+.||++=
T Consensus 211 ~v~ilYGGSV~~~N~~~i~~~~~vDG~LVGgAS 243 (260)
T d1m6ja_ 211 ATRIQYGGSVNPANCNELAKKADIDGFLVGGAS 243 (260)
T ss_dssp HSCEEECSCCCTTTHHHHHTSTTCCEEEESGGG
T ss_pred CCcEEEcCCCCHhHHHHHhCCCCCCeEEechHh
Confidence 48999999999999999995 9999999863
|
| >d2cu0a1 c.1.5.1 (A:3-96,A:207-480) Inosine monophosphate dehydrogenase (IMPDH) {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Pyrococcus horikoshii [TaxId: 53953]
Probab=90.37 E-value=0.12 Score=45.05 Aligned_cols=55 Identities=15% Similarity=0.280 Sum_probs=42.7
Q ss_pred hccccEEEecCCCCCCCC-CHHHHHHHHhcCCCCEEEecCC-ChHhHHHhhcCCEEEEe
Q psy9039 184 FFLSDGLIITGNATGDPA-DVSQLMSVKNAVDLPILIGSGV-TSDNVEHYMTADALIIG 240 (251)
Q Consensus 184 ~~~~D~v~VTG~~~g~~~-~~~~l~~vr~~~~~PV~vG~GI-~~~~v~~~~~ADGvIVG 240 (251)
..|+|.+++..++ |... ..+.++++|+..++|+++ |++ |++.+..+..||++-||
T Consensus 126 ~aGvd~ivID~A~-Gh~~~~i~~lK~ir~~~~~~vIa-GNVaT~e~~~~l~gaD~VkVG 182 (368)
T d2cu0a1 126 KAGVDVIVVDTAH-AHNLKAIKSMKEMRQKVDADFIV-GNIANPKAVDDLTFADAVKVG 182 (368)
T ss_dssp HTTCSEEEEECSC-CCCHHHHHHHHHHHHTCCSEEEE-EEECCHHHHTTCTTSSEEEEC
T ss_pred HcCCCEEEecCcc-cchhhhhhhhhhhhhhcccceee-ccccCHHHHHhhhcCcceeec
Confidence 4689999998886 3333 347788999988999887 677 88887665459999988
|
| >d1xrsb1 c.23.6.1 (B:102-261) D-lysine 5,6-aminomutase beta subunit KamE, C-terminal domain {Clostridium sticklandii [TaxId: 1511]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Cobalamin (vitamin B12)-binding domain family: Cobalamin (vitamin B12)-binding domain domain: D-lysine 5,6-aminomutase beta subunit KamE, C-terminal domain species: Clostridium sticklandii [TaxId: 1511]
Probab=90.14 E-value=0.36 Score=36.88 Aligned_cols=67 Identities=15% Similarity=0.143 Sum_probs=45.4
Q ss_pred CcccHHHHHHHhhhccccEEEecCCCCCCCC---CH-HHHHHHHhcC---CCCEEEecCC-ChHhHHHhhcCCEEE
Q psy9039 171 ADVDITETAKAASFFLSDGLIITGNATGDPA---DV-SQLMSVKNAV---DLPILIGSGV-TSDNVEHYMTADALI 238 (251)
Q Consensus 171 ~~~~i~~~a~~a~~~~~D~v~VTG~~~g~~~---~~-~~l~~vr~~~---~~PV~vG~GI-~~~~v~~~~~ADGvI 238 (251)
.+.+.+++++.+....+|.+++|..-+.... .+ +.++.+|+.. ++||++||+. +++-++ .+.||++.
T Consensus 64 ~~vp~e~~v~~a~e~~~d~VglS~l~t~~~~h~~~~~~~i~~l~~~g~~d~v~vivGG~~~~~~~a~-~~GaD~~f 138 (160)
T d1xrsb1 64 SQVANEDFIKKAVELEADVLLVSQTVTQKNVHIQNMTHLIELLEAEGLRDRFVLLCGGPRINNEIAK-ELGYDAGF 138 (160)
T ss_dssp SSBCHHHHHHHHHHTTCSEEEEECCCCTTSHHHHHHHHHHHHHHHTTCGGGSEEEEECTTCCHHHHH-TTTCSEEE
T ss_pred CCCCHHHHHHHHHhcCCCEEEEeecccccchhHHHHHHHHHHHHHcCCCCceEEEEcCCCCCHHHHH-HcCCCEEc
Confidence 4467788888888789999999987543221 22 4566777763 4899999988 554443 33488764
|
| >d1b9ba_ c.1.1.1 (A:) Triosephosphate isomerase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Triosephosphate isomerase (TIM) family: Triosephosphate isomerase (TIM) domain: Triosephosphate isomerase species: Thermotoga maritima [TaxId: 2336]
Probab=89.88 E-value=0.11 Score=42.95 Aligned_cols=31 Identities=23% Similarity=0.375 Sum_probs=27.6
Q ss_pred CCCEEEecCCChHhHHHhhc---CCEEEEeceEe
Q psy9039 214 DLPILIGSGVTSDNVEHYMT---ADALIIGSHFK 244 (251)
Q Consensus 214 ~~PV~vG~GI~~~~v~~~~~---ADGvIVGS~~~ 244 (251)
++||+-||.++++|+.+++. .||+.||++=.
T Consensus 205 ~i~ilYGGSV~~~N~~~i~~~~~vDG~LVGgASL 238 (252)
T d1b9ba_ 205 SIRILYGGSIKPDNFLGLIVQKDIDGGLVGGASL 238 (252)
T ss_dssp HSEEEEESSCCHHHHTTTSSSTTCCEEEESGGGT
T ss_pred cccEEEcCCCCHHHHHHHhcCCCCCEEEeechhC
Confidence 48999999999999999995 99999997643
|
| >d1mo0a_ c.1.1.1 (A:) Triosephosphate isomerase {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Triosephosphate isomerase (TIM) family: Triosephosphate isomerase (TIM) domain: Triosephosphate isomerase species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=89.81 E-value=0.058 Score=44.84 Aligned_cols=29 Identities=28% Similarity=0.485 Sum_probs=26.7
Q ss_pred CCCEEEecCCChHhHHHhhc---CCEEEEece
Q psy9039 214 DLPILIGSGVTSDNVEHYMT---ADALIIGSH 242 (251)
Q Consensus 214 ~~PV~vG~GI~~~~v~~~~~---ADGvIVGS~ 242 (251)
++||+-||-++++|+.+++. .||+.||++
T Consensus 210 ~~~iLYGGSV~~~N~~~i~~~~~vDG~LVGgA 241 (257)
T d1mo0a_ 210 ATRIIYGGSVTADNAAELGKKPDIDGFLVGGA 241 (257)
T ss_dssp HSCEEEESSCCTTTHHHHTTSTTCCEEEESGG
T ss_pred cccEEeeCCcCHHHHHHHhcCCCCCeEEeehH
Confidence 48999999999999999995 999999976
|
| >d1zfja1 c.1.5.1 (A:2-94,A:221-492) Inosine monophosphate dehydrogenase (IMPDH) {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Streptococcus pyogenes [TaxId: 1314]
Probab=89.71 E-value=0.25 Score=42.84 Aligned_cols=56 Identities=13% Similarity=0.305 Sum_probs=42.5
Q ss_pred hccccEEEecCCCCCCCCC-HHHHHHHHhcC-CCCEEEecCC-ChHhHHHhhc--CCEEEEec
Q psy9039 184 FFLSDGLIITGNATGDPAD-VSQLMSVKNAV-DLPILIGSGV-TSDNVEHYMT--ADALIIGS 241 (251)
Q Consensus 184 ~~~~D~v~VTG~~~g~~~~-~~~l~~vr~~~-~~PV~vG~GI-~~~~v~~~~~--ADGvIVGS 241 (251)
..|+|.+++.-++ |.... .+.++++|+.. ++||++ |.+ |++.+.++.+ ||++.||-
T Consensus 117 ~agvd~ivID~A~-G~s~~~~~~i~~ik~~~~~~~iIa-GNV~T~e~a~~L~~aGaD~VkVGi 177 (365)
T d1zfja1 117 EAGADAIVIDTAH-GHSAGVLRKIAEIRAHFPNRTLIA-GNIATAEGARALYDAGVDVVKVGI 177 (365)
T ss_dssp HHTCSEEEECCSC-TTCHHHHHHHHHHHHHCSSSCEEE-EEECSHHHHHHHHHTTCSEEEECS
T ss_pred HcCCCEEEEECCc-ccccchhHHHHHHHhhCCCcceee-cccccHHHHHHHHhcCCceEEeee
Confidence 3589999998664 33333 46788888776 788775 556 8999999986 99999994
|
| >d1r2ra_ c.1.1.1 (A:) Triosephosphate isomerase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Triosephosphate isomerase (TIM) family: Triosephosphate isomerase (TIM) domain: Triosephosphate isomerase species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=89.71 E-value=0.12 Score=42.45 Aligned_cols=29 Identities=21% Similarity=0.462 Sum_probs=26.8
Q ss_pred CCCEEEecCCChHhHHHhhc---CCEEEEece
Q psy9039 214 DLPILIGSGVTSDNVEHYMT---ADALIIGSH 242 (251)
Q Consensus 214 ~~PV~vG~GI~~~~v~~~~~---ADGvIVGS~ 242 (251)
++||+-||-++++|+.+++. .||+.||++
T Consensus 201 ~i~ilYGGSV~~~N~~~i~~~~~vDG~LVGgA 232 (246)
T d1r2ra_ 201 STRIIYGGSVTGATCKELASQPDVDGFLVGGA 232 (246)
T ss_dssp HCCEEECSCCCTTTHHHHHTSTTCCEEEESGG
T ss_pred cccEEecCCCCHHHHHHHhcCCCCCeEEeehh
Confidence 48999999999999999994 999999976
|
| >d1aw1a_ c.1.1.1 (A:) Triosephosphate isomerase {Vibrio marinus [TaxId: 90736]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Triosephosphate isomerase (TIM) family: Triosephosphate isomerase (TIM) domain: Triosephosphate isomerase species: Vibrio marinus [TaxId: 90736]
Probab=89.15 E-value=0.13 Score=42.53 Aligned_cols=30 Identities=23% Similarity=0.490 Sum_probs=27.1
Q ss_pred CCCEEEecCCChHhHHHhhc---CCEEEEeceE
Q psy9039 214 DLPILIGSGVTSDNVEHYMT---ADALIIGSHF 243 (251)
Q Consensus 214 ~~PV~vG~GI~~~~v~~~~~---ADGvIVGS~~ 243 (251)
++||+-||-++++|+.+++. .||+.||++=
T Consensus 205 ~i~ilYGGSV~~~N~~~i~~~~~vDG~LVG~AS 237 (255)
T d1aw1a_ 205 NVVIQYGGSVKPENAAAYFAQPDIDGALVGGAA 237 (255)
T ss_dssp HCEEEECSCCCTTTHHHHHTSTTCCEEEESGGG
T ss_pred cceEEEcCCCCHhHHHHHhcCCCCCeEEechHh
Confidence 47999999999999999995 9999999864
|
| >d1goxa_ c.1.4.1 (A:) Glycolate oxidase {Spinach (Spinacia oleracea) [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Glycolate oxidase species: Spinach (Spinacia oleracea) [TaxId: 3562]
Probab=88.99 E-value=0.43 Score=40.61 Aligned_cols=66 Identities=24% Similarity=0.404 Sum_probs=47.4
Q ss_pred HHHhhhccccEEEecCCCCC----CCCCHHHHHHHHhcC--CCCEEEecCC-ChHhHHHhhc--CCEEEEeceEe
Q psy9039 179 AKAASFFLSDGLIITGNATG----DPADVSQLMSVKNAV--DLPILIGSGV-TSDNVEHYMT--ADALIIGSHFK 244 (251)
Q Consensus 179 a~~a~~~~~D~v~VTG~~~g----~~~~~~~l~~vr~~~--~~PV~vG~GI-~~~~v~~~~~--ADGvIVGS~~~ 244 (251)
+..+..+|+|.+.++...-- .....+.+..+++.+ ++||++-||| |.-++.+.+. ||.|-+|-.|.
T Consensus 238 a~~a~~~g~~~~~vsnhggr~ld~~~~~~~~l~~i~~~~~~~~~iiadGGIR~G~Di~KALaLGAd~vgigrp~L 312 (359)
T d1goxa_ 238 ARLAVQHGAAGIIVSNHGARQLDYVPATIMALEEVVKAAQGRIPVFLDGGVRRGTDVFKALALGAAGVFIGRPVV 312 (359)
T ss_dssp HHHHHHTTCSEEEECCGGGTSSTTCCCHHHHHHHHHHHTTTSSCEEEESSCCSHHHHHHHHHHTCSEEEECHHHH
T ss_pred HHHHHHccccceecccccccccccccchhhhchhhhhccCCccceeeccCcCcHHHHHHHHHcCCCEEEEcHHHH
Confidence 45556678999998764221 122345666666554 6899999999 7899888886 99999986543
|
| >d7reqb2 c.23.6.1 (B:476-638) Methylmalonyl-CoA mutase beta subunit, C-terminal domain {Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Cobalamin (vitamin B12)-binding domain family: Cobalamin (vitamin B12)-binding domain domain: Methylmalonyl-CoA mutase beta subunit, C-terminal domain species: Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]
Probab=88.90 E-value=0.061 Score=41.57 Aligned_cols=65 Identities=12% Similarity=-0.085 Sum_probs=45.4
Q ss_pred cHHHHHHHhhhccccEEEecCCCCCCCCCH-HHHHHHHhcC-CCCEEEecCCChHhHHHhhc--CCEEE
Q psy9039 174 DITETAKAASFFLSDGLIITGNATGDPADV-SQLMSVKNAV-DLPILIGSGVTSDNVEHYMT--ADALI 238 (251)
Q Consensus 174 ~i~~~a~~a~~~~~D~v~VTG~~~g~~~~~-~~l~~vr~~~-~~PV~vG~GI~~~~v~~~~~--ADGvI 238 (251)
+.++.++.+...++|.+++++..+...+.. +.++.+|+.- +..|++|+++.+++...+.. .|++|
T Consensus 74 ~~~e~v~aa~~~~a~vvvicssd~~y~~~~~~~~~aLk~ag~~~~vlaGg~~~~~d~~~l~~aGVd~~i 142 (163)
T d7reqb2 74 TTAEIVEAFKKSGAQVADLCSSAKVYAQQGLEVAKALKAAGAKALYLSGAFKEFGDDAAEAEKLIDGRL 142 (163)
T ss_dssp CHHHHHHHHHHHTCSEEEEECCHHHHHHHHHHHHHHHHHTTCSEEEEESCGGGGGGGHHHHHHHCCEEE
T ss_pred CcHHHHHHHHhCCCCEEEEecCccchHHHHHHHHHHHHhcccceeEEEecCCCcccHHHHHhCCCCeEe
Confidence 345555555567999999999865544433 5677788764 67788888877666666654 88876
|
| >d1p4ca_ c.1.4.1 (A:) Membrane-associated (S)-mandelate dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Membrane-associated (S)-mandelate dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=88.85 E-value=0.29 Score=41.34 Aligned_cols=66 Identities=20% Similarity=0.299 Sum_probs=47.8
Q ss_pred HHHhhhccccEEEecCC---CCC-CCCCHHHHHHHHhcCCCCEEEecCC-ChHhHHHhhc--CCEEEEeceEe
Q psy9039 179 AKAASFFLSDGLIITGN---ATG-DPADVSQLMSVKNAVDLPILIGSGV-TSDNVEHYMT--ADALIIGSHFK 244 (251)
Q Consensus 179 a~~a~~~~~D~v~VTG~---~~g-~~~~~~~l~~vr~~~~~PV~vG~GI-~~~~v~~~~~--ADGvIVGS~~~ 244 (251)
+..+...++|++.++.. ... ..+..+.+.+++...++||++-||| ++-++.+.+. ||.|-+|-.|.
T Consensus 236 ~~~a~~~g~~~~~~s~~gg~~~~~~~~~~~~l~~i~~~~~~~viasGGIR~G~Dv~KALaLGAd~vgigrp~L 308 (353)
T d1p4ca_ 236 ADRCIAEGADGVILSNHGGRQLDCAISPMEVLAQSVAKTGKPVLIDSGFRRGSDIVKALALGAEAVLLGRATL 308 (353)
T ss_dssp HHHHHHTTCSEEEECCGGGTSCTTCCCGGGTHHHHHHHHCSCEEECSSCCSHHHHHHHHHTTCSCEEESHHHH
T ss_pred HHHHHhcCCchhhhcccccccccccccchhcccchhcccccceeecCCcCchHHHHHHHHcCCCEEEEcHHHH
Confidence 34444568999988743 111 2234566777777788999999999 7899888886 99999886543
|
| >d1pvna1 c.1.5.1 (A:2-99,A:231-494) Inosine monophosphate dehydrogenase (IMPDH) {Tritrichomonas foetus [TaxId: 5724]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Tritrichomonas foetus [TaxId: 5724]
Probab=88.24 E-value=0.13 Score=44.59 Aligned_cols=68 Identities=19% Similarity=0.263 Sum_probs=42.7
Q ss_pred HHHHHHhhhccccEEEe---------cCCCCCCC-CCHHHHHHHH---h------cCCCCEEEecCC-ChHhHHHhhc--
Q psy9039 176 TETAKAASFFLSDGLII---------TGNATGDP-ADVSQLMSVK---N------AVDLPILIGSGV-TSDNVEHYMT-- 233 (251)
Q Consensus 176 ~~~a~~a~~~~~D~v~V---------TG~~~g~~-~~~~~l~~vr---~------~~~~PV~vG~GI-~~~~v~~~~~-- 233 (251)
.+.++.....|+|++-| |-..+|.. |.+..+.++. + ...+||+.-||| ++.++.+.+.
T Consensus 163 ~e~~~~L~~aGaD~vkVGIG~Gs~CTTr~~tGvG~Pq~sAv~e~a~~~~~~~~~~~~~v~iiaDGGi~~~gdi~KAla~G 242 (362)
T d1pvna1 163 GEGFRYLADAGADFIKIGIGGGSICITREQKGIGRGQATAVIDVVAERNKYFEETGIYIPVCSDGGIVYDYHMTLALAMG 242 (362)
T ss_dssp HHHHHHHHHHTCSEEEECSSCSTTBCHHHHTCBCCCHHHHHHHHHHHHHHHHHHHSEECCEEEESCCCSHHHHHHHHHTT
T ss_pred HHHHHHHHHhCCcEEEecccccccccchhhhccCCchHHHHHHHHHHHHHhhhhcccCCceeeccccCcccceeEEEEEe
Confidence 33444444458888844 33334432 2344444332 2 125999999999 6888888885
Q ss_pred CCEEEEeceE
Q psy9039 234 ADALIIGSHF 243 (251)
Q Consensus 234 ADGvIVGS~~ 243 (251)
||.|.+||.|
T Consensus 243 Ad~VM~G~~l 252 (362)
T d1pvna1 243 ADFIMLGRYF 252 (362)
T ss_dssp CSEEEESHHH
T ss_pred ccceeehhhh
Confidence 9999997754
|
| >d1p0ka_ c.1.4.1 (A:) Isopentenyl-diphosphate delta-isomerase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Isopentenyl-diphosphate delta-isomerase species: Bacillus subtilis [TaxId: 1423]
Probab=86.84 E-value=0.84 Score=37.98 Aligned_cols=67 Identities=18% Similarity=0.346 Sum_probs=45.5
Q ss_pred HHHHHHHhhhccccEEEecCCCCCC----------CCCHHHHHHHHhcCCCCEE---EecCCChHhHHHhhc--CCEEEE
Q psy9039 175 ITETAKAASFFLSDGLIITGNATGD----------PADVSQLMSVKNAVDLPIL---IGSGVTSDNVEHYMT--ADALII 239 (251)
Q Consensus 175 i~~~a~~a~~~~~D~v~VTG~~~g~----------~~~~~~l~~vr~~~~~PV~---vG~GI~~~~v~~~~~--ADGvIV 239 (251)
.....+..+..+.+++.++-..... ....+.++++|+.++.|++ +|.+.+++.++.+.+ +|+++|
T Consensus 109 ~~~~~~~~~~~g~~ai~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~vivk~v~~~~~~~~a~~~~~~GaD~i~v 188 (329)
T d1p0ka_ 109 AAQAKEAVEMIGANALQIHLNVIQEIVMPEGDRSFSGALKRIEQICSRVSVPVIVKEVGFGMSKASAGKLYEAGAAAVDI 188 (329)
T ss_dssp HHHHHHHHHHTTCSEEEEEECTTTTC--------CTTHHHHHHHHHHHCSSCEEEEEESSCCCHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHHHHHcCCCEEEecccccchhhhccccccccchHHHHHHHHHHcCCCcEEEecCCcchHHHHHHHHhcCCCEEEE
Confidence 3333333344678888776543321 1124778899999888888 455568888888876 999999
Q ss_pred ec
Q psy9039 240 GS 241 (251)
Q Consensus 240 GS 241 (251)
+.
T Consensus 189 ~~ 190 (329)
T d1p0ka_ 189 GG 190 (329)
T ss_dssp EC
T ss_pred cC
Confidence 75
|
| >d1o66a_ c.1.12.8 (A:) Ketopantoate hydroxymethyltransferase PanB {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Ketopantoate hydroxymethyltransferase PanB domain: Ketopantoate hydroxymethyltransferase PanB species: Neisseria meningitidis [TaxId: 487]
Probab=85.71 E-value=0.65 Score=38.25 Aligned_cols=150 Identities=12% Similarity=0.032 Sum_probs=72.2
Q ss_pred CcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEE-E----EeeCChHHHHHHH---HHcCc
Q psy9039 45 SVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGV-Q----ILSGCNKAALATA---QAAGL 116 (251)
Q Consensus 45 l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gv-n----~~~N~~~~~~~ia---~a~g~ 116 (251)
+.++|+ |.|++-.-+++-+.-...--|++..-|..-.+.+|+..+ .++.+ . .|.+...+....+ ...|+
T Consensus 31 ae~agi-DiilVGDSlgm~~~G~~~T~~vt~d~mi~h~~aV~rga~--~~~~i~dmPf~sy~~~~~~~~~a~~~~~~~ga 107 (260)
T d1o66a_ 31 MDDAGV-EMLLVGDSLGMAVQGRKSTLPVSLRDMCYHTECVARGAK--NAMIVSDLPFGAYQQSKEQAFAAAAELMAAGA 107 (260)
T ss_dssp HHHTTC-CEEEECTTHHHHTTCCSSSTTCCHHHHHHHHHHHHHHCS--SSEEEEECCTTSSSSCHHHHHHHHHHHHHTTC
T ss_pred HHHcCC-CEEEEcCCchheecCCCCccccchhhhhhhhHHHHccCc--ceeeecchhhhhhcchhHHHHHHHHHHHHhhh
Confidence 678999 999984211111111111235667778888899999877 34443 2 2222212222211 22344
Q ss_pred cceecccccccccCCCceeecCcchhHHHHHhcCCCcchhhhhh--HhhccCCC-----CCCcccHHHHHHHh---hhcc
Q psy9039 117 DFIRAESFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDI--KKKHSSHA-----ITADVDITETAKAA---SFFL 186 (251)
Q Consensus 117 ~Fir~~~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v--~~k~~~~~-----~~~~~~i~~~a~~a---~~~~ 186 (251)
+.+.. ++. .+..+.-+.+-.+.|.+++-+ .|++.... ...+..-.++.+.| +..|
T Consensus 108 davk~--------------eg~-~~~~~~i~~l~~~gIPV~gHiGl~Pq~~~~~gG~r~~Gk~~e~~~l~~~a~~le~AG 172 (260)
T d1o66a_ 108 HMVKL--------------EGG-VWMAETTEFLQMRGIPVCAHIGLTPQSVFAFGGYKVQGRGGKAQALLNDAKAHDDAG 172 (260)
T ss_dssp SEEEE--------------ECS-GGGHHHHHHHHHTTCCEEEEEESCGGGTTC-----------CHHHHHHHHHHHHHTT
T ss_pred hhccc--------------cch-hhhhHHHHHHHHcCCeeEeecccccchheecCcceeccccchhHHHHHHHHHHHHhh
Confidence 44442 111 222222222222355665522 33321100 00011112344444 3479
Q ss_pred ccEEEecCCCCCCCCCHHHHHHHHhcCCCCEE
Q psy9039 187 SDGLIITGNATGDPADVSQLMSVKNAVDLPIL 218 (251)
Q Consensus 187 ~D~v~VTG~~~g~~~~~~~l~~vr~~~~~PV~ 218 (251)
|.++.+.+. ..+.-+++.+.+++|++
T Consensus 173 a~~ivlE~V------p~~va~~It~~~~iptI 198 (260)
T d1o66a_ 173 AAVVLMECV------LAELAKKVTETVSCPTI 198 (260)
T ss_dssp CSEEEEESC------CHHHHHHHHHHCSSCEE
T ss_pred hhehhhhhc------cHHHHHHHHhhhcceee
Confidence 999988654 24556678888999998
|
| >d1jr1a1 c.1.5.1 (A:17-112,A:233-514) Inosine monophosphate dehydrogenase (IMPDH) {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=85.00 E-value=0.63 Score=40.34 Aligned_cols=58 Identities=17% Similarity=0.278 Sum_probs=42.4
Q ss_pred hccccEEEecCCCCCCCCCHHHHHHHHhcC-CCCEEEecCCChHhHHHhhc--CCEEEEec
Q psy9039 184 FFLSDGLIITGNATGDPADVSQLMSVKNAV-DLPILIGSGVTSDNVEHYMT--ADALIIGS 241 (251)
Q Consensus 184 ~~~~D~v~VTG~~~g~~~~~~~l~~vr~~~-~~PV~vG~GI~~~~v~~~~~--ADGvIVGS 241 (251)
..++|.+++.+++.....-.+.++.+|+.. ++||++|-=.|++.+..+.+ ||++.||-
T Consensus 129 ~agv~vi~id~a~g~~~~~~~~i~~ik~~~~~~~iIaGnVaT~e~a~~L~~aGAD~VkVGi 189 (378)
T d1jr1a1 129 LAGVDVVVLDSSQGNSIFQINMIKYMKEKYPNLQVIGGNVVTAAQAKNLIDAGVDALRVGM 189 (378)
T ss_dssp HHTCCEEEECCSSCCSHHHHHHHHHHHHHSTTCEEEEEEECSHHHHHHHHHHTCSEEEECS
T ss_pred hhccceEeeeccCccchhhHHHHHHHHHHCCCCceeecccccHHHHHHHHHhCCCEEeecc
Confidence 468999999888633222346688888776 67776544348999999886 99999984
|
| >d1q45a_ c.1.4.1 (A:) 12-oxophytodienoate reductase (OPR, OYE homolog) {Thale cress (Arabidopsis thaliana), OPR3 [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: 12-oxophytodienoate reductase (OPR, OYE homolog) species: Thale cress (Arabidopsis thaliana), OPR3 [TaxId: 3702]
Probab=84.63 E-value=0.24 Score=42.79 Aligned_cols=44 Identities=16% Similarity=0.168 Sum_probs=37.5
Q ss_pred HHHHHHHhcCCCCEEEecCCChHhHHHhhc---CCEEEEeceEeecC
Q psy9039 204 SQLMSVKNAVDLPILIGSGVTSDNVEHYMT---ADALIIGSHFKQGG 247 (251)
Q Consensus 204 ~~l~~vr~~~~~PV~vG~GI~~~~v~~~~~---ADGvIVGS~~~~~g 247 (251)
...+.+|+.++.||++.||++++.+.+++. ||.|-+|-.|+-|-
T Consensus 297 ~~~~~ik~~~~~pv~~~Gg~~~~~ae~~l~~G~~DlV~~gR~liaDP 343 (380)
T d1q45a_ 297 KLMKSLRMAYNGTFMSSGGFNKELGMQAVQQGDADLVSYGRLFIANP 343 (380)
T ss_dssp HHHHHHHHHSCSCEEEESSCCHHHHHHHHHTTSCSEEEESHHHHHCT
T ss_pred HHHHHHhhccCCcEEeCCCCCHHHHHHHHHcCCccchhhhHHHHHCc
Confidence 456678888999999999999999888884 99999998887653
|
| >d1kbia1 c.1.4.1 (A:98-511) Flavocytochrome b2, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Flavocytochrome b2, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=84.00 E-value=0.82 Score=39.74 Aligned_cols=67 Identities=16% Similarity=0.249 Sum_probs=45.3
Q ss_pred HHHHhhhccccEEEecCCCCCC----CCCHHHHHHHHh------c-CCCCEEEecCC-ChHhHHHhhc--CCEEEEeceE
Q psy9039 178 TAKAASFFLSDGLIITGNATGD----PADVSQLMSVKN------A-VDLPILIGSGV-TSDNVEHYMT--ADALIIGSHF 243 (251)
Q Consensus 178 ~a~~a~~~~~D~v~VTG~~~g~----~~~~~~l~~vr~------~-~~~PV~vG~GI-~~~~v~~~~~--ADGvIVGS~~ 243 (251)
-+..+..+|+|++.+++..-.. .....-+.++.+ . .++||++-||| +.-++.+.+. ||.|-+|..|
T Consensus 259 da~~~~~~G~~~i~vsnhggr~~d~~~~~~~~l~~i~~~~~~~~v~~~~~viadGGIR~G~DVaKALALGAdaVgigrp~ 338 (414)
T d1kbia1 259 DVIKAAEIGVSGVVLSNHGGRQLDFSRAPIEVLAETMPILEQRNLKDKLEVFVDGGVRRGTDVLKALCLGAKGVGLGRPF 338 (414)
T ss_dssp HHHHHHHTTCSEEEECCTTTTSSTTCCCHHHHHHHHHHHHHTTTCBTTBEEEEESSCCSHHHHHHHHHHTCSEEEECHHH
T ss_pred HHHHHHhcCCcceeeccccccccccccccccchhhhhhhhhhhccCCceeEEecCCcCcHHHHHHHHHcCCCEEEEcHHH
Confidence 3445556799999998853211 112233333332 1 25999999999 7888888886 9999999766
Q ss_pred e
Q psy9039 244 K 244 (251)
Q Consensus 244 ~ 244 (251)
.
T Consensus 339 L 339 (414)
T d1kbia1 339 L 339 (414)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >d1o4ua1 c.1.17.1 (A:104-273) Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Nicotinate/Quinolinate PRTase C-terminal domain-like family: NadC C-terminal domain-like domain: Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=83.28 E-value=0.5 Score=36.49 Aligned_cols=64 Identities=20% Similarity=0.230 Sum_probs=42.8
Q ss_pred HHHHHhhhccccEEEecCCCCCCCCCH-HHHHHHHhcC-CCCEEEecCCChHhHHHhhc--CCEEEEeceE
Q psy9039 177 ETAKAASFFLSDGLIITGNATGDPADV-SQLMSVKNAV-DLPILIGSGVTSDNVEHYMT--ADALIIGSHF 243 (251)
Q Consensus 177 ~~a~~a~~~~~D~v~VTG~~~g~~~~~-~~l~~vr~~~-~~PV~vG~GI~~~~v~~~~~--ADGvIVGS~~ 243 (251)
+.+..+...++|.+-.-... +.+. +.++.+|+.. .+-+-+.|||+.+|+.++.. +|.+.+|+-.
T Consensus 89 ~e~~~a~~~g~d~i~LDn~~---pe~~k~~~~~lk~~~~~i~lEaSGGI~~~ni~~~a~~GVD~Is~g~lt 156 (170)
T d1o4ua1 89 EDALRAVEAGADIVMLDNLS---PEEVKDISRRIKDINPNVIVEVSGGITEENVSLYDFETVDVISSSRLT 156 (170)
T ss_dssp HHHHHHHHTTCSEEEEESCC---HHHHHHHHHHHHHHCTTSEEEEEECCCTTTGGGGCCTTCCEEEEGGGT
T ss_pred HHHHHHHhcCccEEEEcCcC---hhhHhHHHHHHHhhCCcEEEEEECCCCHHHHHHHHHcCCCEEEcCccc
Confidence 33455555689988765332 1123 2234555544 56778999999999999996 9988888643
|
| >d1qapa1 c.1.17.1 (A:130-296) Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Nicotinate/Quinolinate PRTase C-terminal domain-like family: NadC C-terminal domain-like domain: Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=83.17 E-value=1.5 Score=33.59 Aligned_cols=62 Identities=15% Similarity=0.249 Sum_probs=42.5
Q ss_pred cHHHHHHHhhhccccEEEecCCCCCCCCCHHHHHHHHhcC--CCCEEEecCCChHhHHHhhc--CCEEEEece
Q psy9039 174 DITETAKAASFFLSDGLIITGNATGDPADVSQLMSVKNAV--DLPILIGSGVTSDNVEHYMT--ADALIIGSH 242 (251)
Q Consensus 174 ~i~~~a~~a~~~~~D~v~VTG~~~g~~~~~~~l~~vr~~~--~~PV~vG~GI~~~~v~~~~~--ADGvIVGS~ 242 (251)
++++ ++.+...++|.+-.-.. +++.+++.-+.. +..+-+.|||+.+|+.++.. +|.+.+|+-
T Consensus 88 ~~~~-~~~a~~~g~diImLDN~------~pe~~~~av~~i~~~~~lEaSGgI~~~ni~~ya~~GVD~IS~gal 153 (167)
T d1qapa1 88 NLDE-LDDALKAGADIIMLDNF------NTDQMREAVKRVNGQARLEVSGNVTAETLREFAETGVDFISVGAL 153 (167)
T ss_dssp SHHH-HHHHHHTTCSEEEESSC------CHHHHHHHHHTTCTTCCEEECCCSCHHHHHHHHHTTCSEEECSHH
T ss_pred cHHH-HHHHHhcCCcEEEecCC------CHHHHHHHHHhcCCceEEEEeCCCCHHHHHHHHHcCCCEEECCcc
Confidence 4444 44554468999766422 344555433333 57788999999999999996 999988874
|
| >d1l6sa_ c.1.10.3 (A:) 5-aminolaevulinate dehydratase, ALAD (porphobilinogen synthase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: 5-aminolaevulinate dehydratase, ALAD (porphobilinogen synthase) domain: 5-aminolaevulinate dehydratase, ALAD (porphobilinogen synthase) species: Escherichia coli [TaxId: 562]
Probab=82.46 E-value=1.5 Score=37.04 Aligned_cols=40 Identities=18% Similarity=0.257 Sum_probs=28.9
Q ss_pred HHHHHHhhh---ccccEEEecCCCCCCCCCHHHHHHHHhcCCCCEEE
Q psy9039 176 TETAKAASF---FLSDGLIITGNATGDPADVSQLMSVKNAVDLPILI 219 (251)
Q Consensus 176 ~~~a~~a~~---~~~D~v~VTG~~~g~~~~~~~l~~vr~~~~~PV~v 219 (251)
.+..+++.. -|||.+.|- .+ -+-++.|+++|+.+++||.+
T Consensus 226 ~ea~~e~~~d~~EGAD~lmVK---Pa-~~yLDii~~~k~~~~~Pv~a 268 (323)
T d1l6sa_ 226 REAIRESLLDEAQGADCLMVK---PA-GAYLDIVRELRERTELPIGA 268 (323)
T ss_dssp HHHHHHHHHHHHTTCSBEEEE---SC-TTCHHHHHHHHTTCSSCEEE
T ss_pred hHHHHHHHHHHhhccceEEec---cc-hhhHHHHHHHHHhcCCCEEE
Confidence 344455542 499999983 22 33579999999999999986
|
| >d2czda1 c.1.2.3 (A:1-206) Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Decarboxylase domain: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) species: Pyrococcus horikoshii [TaxId: 53953]
Probab=82.02 E-value=5.8 Score=30.39 Aligned_cols=159 Identities=15% Similarity=0.213 Sum_probs=77.2
Q ss_pred CCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChH---H-HHHHHHHcCccceeccc
Q psy9039 48 VGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNK---A-ALATAQAAGLDFIRAES 123 (251)
Q Consensus 48 ~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~---~-~~~ia~a~g~~Fir~~~ 123 (251)
..+ |++.+ |.||-.. -|+ +.++++|+..+ .|+-+.+=..|-. . ........|++++-++.
T Consensus 23 ~~v-~~iKv----G~~l~~~--~G~-------~~i~~l~~~~~--~~if~DlK~~Di~~t~~~~~~~~~~~gad~~Tvh~ 86 (206)
T d2czda1 23 DYI-SMIKV----NWPLILG--SGV-------DIIRRLKEETG--VEIIADLKLADIPNTNRLIARKVFGAGADYVIVHT 86 (206)
T ss_dssp GGC-SEEEE----EHHHHHH--HCT-------THHHHHHHHHC--CEEEEEEEECSCHHHHHHHHHHHHHTTCSEEEEES
T ss_pred Ccc-cEEEE----CHHHHhh--cCH-------HHHHHHHHhcC--CeEEEEeeeeeecccchheehhhccccccEEEeee
Confidence 468 88875 5555432 233 35667776656 6888887777621 1 12222345778877653
Q ss_pred ccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHhhccCCCCCCcccHHHHHHHhhhccccEEEecCCCCCCCCCH
Q psy9039 124 FVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSSHAITADVDITETAKAASFFLSDGLIITGNATGDPADV 203 (251)
Q Consensus 124 ~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~~~~~D~v~VTG~~~g~~~~~ 203 (251)
..| .+.++..++.+. ...+.......+... ...-.++..+.+...+.+++...+. ..
T Consensus 87 ~~g-------------~~~i~~~~~~~~--~~~~~~~s~~~~~~~--~~~~~~~~~~~a~~~~~~g~~~~~~------~~ 143 (206)
T d2czda1 87 FVG-------------RDSVMAVKELGE--IIMVVEMSHPGALEF--INPLTDRFIEVANEIEPFGVIAPGT------RP 143 (206)
T ss_dssp TTC-------------HHHHHHHHTTSE--EEEECCCCSGGGGTT--TGGGHHHHHHHHHHHCCSEEECCCS------ST
T ss_pred ccc-------------HHHHHHhhhccc--ceEEEeccCCccccc--ccHHHHHHHHHHHhccccccccccc------Cc
Confidence 222 123333333331 111111111100000 0111222233333334555544433 23
Q ss_pred HHHHHHHhcC--CCCEEEec-CCChHhHHHhhc--CCEEEEeceEee
Q psy9039 204 SQLMSVKNAV--DLPILIGS-GVTSDNVEHYMT--ADALIIGSHFKQ 245 (251)
Q Consensus 204 ~~l~~vr~~~--~~PV~vG~-GI~~~~v~~~~~--ADGvIVGS~~~~ 245 (251)
+.+..+|+.. +..++..| |....+..++++ ||-+|||+++-+
T Consensus 144 ~~~~~~r~~~~~~~~i~~pGI~~~~~~~~~ai~~Gad~iVvGR~I~~ 190 (206)
T d2czda1 144 ERIGYIRDRLKEGIKILAPGIGAQGGKAKDAVKAGADYIIVGRAIYN 190 (206)
T ss_dssp HHHHHHHHHSCTTCEEEECCCCSSTTHHHHHHHHTCSEEEECHHHHT
T ss_pred hhhhhhhhhhcccceEECCCccccCCCHHHHHHhCCCEEEEChhhcc
Confidence 4566677665 34444333 444556666665 999999998754
|
| >d1gvfa_ c.1.10.2 (A:) Tagatose-1,6-bisphosphate aldolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class II FBP aldolase domain: Tagatose-1,6-bisphosphate aldolase species: Escherichia coli [TaxId: 562]
Probab=82.00 E-value=9.3 Score=31.25 Aligned_cols=51 Identities=25% Similarity=0.470 Sum_probs=37.4
Q ss_pred hhccccEEEec-CCCCCC---CC--CHHHHHHHHhcCCCCEEE--ecCCChHhHHHhhc
Q psy9039 183 SFFLSDGLIIT-GNATGD---PA--DVSQLMSVKNAVDLPILI--GSGVTSDNVEHYMT 233 (251)
Q Consensus 183 ~~~~~D~v~VT-G~~~g~---~~--~~~~l~~vr~~~~~PV~v--G~GI~~~~v~~~~~ 233 (251)
+.-|+|.+-|+ |...|. .+ +.++|+++++.+++|+++ |+|+..+++++...
T Consensus 164 ~~TgvD~LAvaiGt~HG~y~~~p~l~~~~L~~i~~~~~vPLVlHGgSG~~~e~i~~ai~ 222 (284)
T d1gvfa_ 164 ELTGVDSLAVAIGTAHGLYSKTPKIDFQRLAEIREVVDVPLVLHGASDVPDEFVRRTIE 222 (284)
T ss_dssp HHHCCSEEEECSSCCSSCCSSCCCCCHHHHHHHHHHCCSCEEECCCTTCCHHHHHHHHH
T ss_pred HHhCCCEEeeecCceeeccCCCCccccchhhhhhccccCCeEeeCCCCCCHHHHHHHHH
Confidence 34589999775 554443 22 458899999999999998 55667788888774
|
| >d1tx2a_ c.1.21.1 (A:) Dihydropteroate synthetase {Bacillus anthracis [TaxId: 1392]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Dihydropteroate synthetase-like family: Dihydropteroate synthetase domain: Dihydropteroate synthetase species: Bacillus anthracis [TaxId: 1392]
Probab=81.09 E-value=1.5 Score=36.09 Aligned_cols=90 Identities=11% Similarity=0.075 Sum_probs=58.5
Q ss_pred CCCCcchHHHHHHHHHhhCCCCcCCCCccEEEEeecCCCCccccCCCchH-HHHHHHHHHHHHHHhCCCCccEEEEEeeC
Q psy9039 24 GPEITANMTRLCAEIRKVLPPSVPVGVQHGVIVENMHDVPYVLEAESGPE-ITANMTRLCAEIRKVLPPSVPVGVQILSG 102 (251)
Q Consensus 24 ~P~~~~~~~~i~~~a~~~a~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~-i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N 102 (251)
|-.|+++.-.=.+.|++.++.|.+.|+ |.|-|-=+=-.|.++++ .+. -..-+..+++++++..+ .|+-|.+|..
T Consensus 30 DSFsdgg~~~~~~~a~~~a~~~i~~GA-diIDIGaeSTrPg~~~i--s~~eE~~rl~p~i~~~~~~~~--~~iSIDT~~~ 104 (273)
T d1tx2a_ 30 DSFSDGGSYNEVDAAVRHAKEMRDEGA-HIIDIGGESTRPGFAKV--SVEEEIKRVVPMIQAVSKEVK--LPISIDTYKA 104 (273)
T ss_dssp CTTCSSCBHHHHHHHHHHHHHHHHTTC-SEEEEESCC----CCCC--CHHHHHHHHHHHHHHHHHHSC--SCEEEECSCH
T ss_pred CCCCCCCcCCCHHHHHHHHHHHHHCCC-CEEEeeceecccccccc--CHHHHHHhhchhHHhhhccce--EEEehHHhhH
Confidence 445665433334567777788999999 99998666668888885 332 22333446778887777 7999999864
Q ss_pred ChHHHHHHHHHcCccceec
Q psy9039 103 CNKAALATAQAAGLDFIRA 121 (251)
Q Consensus 103 ~~~~~~~ia~a~g~~Fir~ 121 (251)
. + +..|...|++++-+
T Consensus 105 ~-V--a~~al~~G~~iIND 120 (273)
T d1tx2a_ 105 E-V--AKQAIEAGAHIIND 120 (273)
T ss_dssp H-H--HHHHHHHTCCEEEE
T ss_pred H-H--HHHHHHcCCeEEec
Confidence 3 4 44556788898885
|
| >d1ajza_ c.1.21.1 (A:) Dihydropteroate synthetase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Dihydropteroate synthetase-like family: Dihydropteroate synthetase domain: Dihydropteroate synthetase species: Escherichia coli [TaxId: 562]
Probab=80.39 E-value=1.1 Score=37.31 Aligned_cols=91 Identities=12% Similarity=0.031 Sum_probs=60.2
Q ss_pred CCCCcchHHHHHHHHHhhCCCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCC
Q psy9039 24 GPEITANMTRLCAEIRKVLPPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGC 103 (251)
Q Consensus 24 ~P~~~~~~~~i~~~a~~~a~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~ 103 (251)
|-.|+++.-.=.+.|++.++.|.+.|+ |.|-|-=+=-.|...++. -.+-..-+.-+++.+|+..+ .|+-|.+|...
T Consensus 26 DSFsdgg~~~~~~~a~~~a~~mi~~GA-diIDIGgeSTrPga~~vs-~eeE~~Rl~pvi~~l~~~~~--~~iSIDT~~~e 101 (282)
T d1ajza_ 26 DSFSDGGTHNSLIDAVKHANLMINAGA-TIIDVGGESTRPGAAEVS-VEEELQRVIPVVEAIAQRFE--VWISVDTSKPE 101 (282)
T ss_dssp TTSTTTTCSSHHHHHHHHHHHHHHHTC-SEEEEESSCCSTTCCCCC-HHHHHHHHHHHHHHHHHHCC--CEEEEECCCHH
T ss_pred CCCCCCCcCCCHHHHHHHHHHHHHCCC-CEEEECCccccccccCCc-HHHHHHHHHHHHHHHhhccc--ceEEEEecChH
Confidence 344554322223455566677889999 999886666688888752 22333334457788888877 78999998743
Q ss_pred hHHHHHHHHHcCccceec
Q psy9039 104 NKAALATAQAAGLDFIRA 121 (251)
Q Consensus 104 ~~~~~~ia~a~g~~Fir~ 121 (251)
+ ...|...|++++-+
T Consensus 102 -V--a~~al~~Ga~iIND 116 (282)
T d1ajza_ 102 -V--IRESAKVGAHIIND 116 (282)
T ss_dssp -H--HHHHHHTTCCEECC
T ss_pred -H--HHHHHhcCceEEec
Confidence 3 45556788899885
|
| >d1qpoa1 c.1.17.1 (A:117-285) Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Nicotinate/Quinolinate PRTase C-terminal domain-like family: NadC C-terminal domain-like domain: Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=80.04 E-value=0.81 Score=35.15 Aligned_cols=64 Identities=13% Similarity=0.129 Sum_probs=43.6
Q ss_pred HHHHHHhhhccccEEEecCCCCCCCCCH-HHHHHHHhcC-CCCEEEecCCChHhHHHhhc--CCEEEEece
Q psy9039 176 TETAKAASFFLSDGLIITGNATGDPADV-SQLMSVKNAV-DLPILIGSGVTSDNVEHYMT--ADALIIGSH 242 (251)
Q Consensus 176 ~~~a~~a~~~~~D~v~VTG~~~g~~~~~-~~l~~vr~~~-~~PV~vG~GI~~~~v~~~~~--ADGvIVGS~ 242 (251)
.+.++.+...++|.+-.-... +.+. +.++.+++.. .+.+-+.|||+.+|+.++.. +|.+.+|+-
T Consensus 89 ~~q~~~a~~~~~diImLDN~s---p~~~k~~v~~~~~~~~~i~lEaSGgI~~~ni~~ya~~GvD~IS~gal 156 (169)
T d1qpoa1 89 LEQLDAVLPEKPELILLDNFA---VWQTQTAVQRRDSRAPTVMLESSGGLSLQTAATYAETGVDYLAVGAL 156 (169)
T ss_dssp HHHHHHHGGGCCSEEEEETCC---HHHHHHHHHHHHHHCTTCEEEEESSCCTTTHHHHHHTTCSEEECGGG
T ss_pred HHHhhhhhhcCCcEEEecCcC---hHhHHHHHHHhhccCCeeEEEEeCCCCHHHHHHHHHcCCCEEECCcc
Confidence 344566666789998775331 1123 3355555544 45667889999999999996 999999974
|