Psyllid ID: psy9049

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60----
Protein Sequence
MKVRLDAEKFQLINNTVLPEAVHFWEQALMVRKTEKNTVLPEAVHFWEQALMVRKTEKVIRLNR
Secondary Structure (PSIPRED)
ccccccHHHHHHHccccHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHccccccc
Secondary Structure Prediction (SSPRO)
ccccccHHHHHHHHHcHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHcHHHEEccc
Coil and Loop (DISEMBL)
mkvrldaekfqlinntvlpeaVHFWEQALMVRktekntvlpeaVHFWEQALMVRKTEKVIRLNR
Flexible Loop (DISEMBL)
mkvrldaekfqlinntvlpeaVHFWEQALMVRKTEKNTVLPEAVhfweqalmvrktekvirlnr
Low Complexity Region (SEG)
MKVRLDAEKFQLINNTVLPEAVHFWEQALMVRKTEKNTVLPEAVHFWEQALMVRKTEKVIRLNR
Disordered region (IsUnstruct)
*******EKFQLINNTVLPEAVHFWEQALMVRKTEKNTVLPEAVHFWEQALMVRKTEKV*****
Disordered Region (DISOPRED)
******AEKFQLINNTVLPEAVHFWEQALMVRKTEKNTVLPEAVHFWEQALMVRKTEK*IRL**
Disordered Region (DISEMBL)
MKVRLDAEKFQLINNTVLPEAVHFWEQALMVRKTEKNTVLPEAVHFWEQALMVRKTEKVIRLNR
Disordered Region (DISPRO)
*KVRLDAEKFQLINNTVLPEAVHFWEQALMVRKTEKNTVLPEAVHFWEQALMVRKTEKVIRLNR
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MKVRLDAEKFQLINNTVLPEAVHFWEQALMVRKTEKNTVLPEAVHFWEQALMVRKTEKVIRLNR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	64	2.2.26 [Sep-21-2011]
Q9VH19	683	Leishmanolysin-like pepti	yes	N/A	0.5	0.046	0.781	2e-08
Q29AK2	684	Leishmanolysin-like pepti	yes	N/A	0.5	0.046	0.781	2e-08

>sp|Q9VH19|LMLN_DROME Leishmanolysin-like peptidase OS=Drosophila melanogaster GN=Invadolysin PE=2 SV=2

 Score = 58.2 bits (139), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 25/32 (78%), Positives = 29/32 (90%)

Query: 4   RLDAEKFQLINNTVLPEAVHFWEQALMVRKTE 35
           RL+ EKF LIN+TVLPEAV FWEQALMVR+T+
Sbjct: 92  RLEEEKFNLINDTVLPEAVQFWEQALMVRETK 123

Essential for the coordination of mitotic progression, and also plays a role in cell migration.
Drosophila melanogaster (taxid: 7227)
EC: 3EC: .EC: 4EC: .EC: 2EC: 4EC: .EC: -

>sp|Q29AK2|LMLN_DROPS Leishmanolysin-like peptidase OS=Drosophila pseudoobscura pseudoobscura GN=GA17800 PE=3 SV=1

 Score = 57.8 bits (138), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 25/32 (78%), Positives = 29/32 (90%)

Query: 4   RLDAEKFQLINNTVLPEAVHFWEQALMVRKTE 35
           RL+ EKF LIN+TVLPEAV FWEQALMVR+T+
Sbjct: 92  RLEEEKFNLINDTVLPEAVQFWEQALMVRETK 123

Essential for the coordination of mitotic progression, and also plays a role in cell migration.

Drosophila pseudoobscura pseudoobscura (taxid: 46245)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 4

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	64
242021617	646	conserved hypothetical protein [Pediculu	0.515	0.051	0.878	1e-09
347968936	716	AGAP002955-PA [Anopheles gambiae str. PE	0.578	0.051	0.702	2e-07
340709352	682	PREDICTED: leishmanolysin-like peptidase	0.546	0.051	0.75	2e-07
350412280	682	PREDICTED: leishmanolysin-like peptidase	0.578	0.054	0.702	2e-07
328792845	683	PREDICTED: leishmanolysin-like peptidase	0.578	0.054	0.702	2e-07
195572047	693	GD18672 [Drosophila simulans] gi|1941999	0.5	0.046	0.781	6e-07
383861831	682	PREDICTED: leishmanolysin-like peptidase	0.5	0.046	0.75	6e-07
195054160	686	GH18015 [Drosophila grimshawi] gi|193895	0.5	0.046	0.781	6e-07
194902447	671	GG17434 [Drosophila erecta] gi|190652403	0.5	0.047	0.781	6e-07
21357023	683	invadolysin [Drosophila melanogaster] gi	0.5	0.046	0.781	7e-07

>gi|242021617|ref|XP_002431241.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212516490|gb|EEB18503.1| conserved hypothetical protein [Pediculus humanus corporis]

 Score = 67.0 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 29/33 (87%), Positives = 32/33 (96%)

Query: 4  RLDAEKFQLINNTVLPEAVHFWEQALMVRKTEK 36
          RLD EKF+LINNT+LPEAVHFWEQALMVRKT+K
Sbjct: 46 RLDEEKFELINNTILPEAVHFWEQALMVRKTDK 78

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|347968936|ref|XP_311944.4| AGAP002955-PA [Anopheles gambiae str. PEST] gi|333467773|gb|EAA07618.4| AGAP002955-PA [Anopheles gambiae str. PEST]

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/37 (70%), Positives = 31/37 (83%)

Query: 4   RLDAEKFQLINNTVLPEAVHFWEQALMVRKTEKNTVL 40
           RLD +KF LINNT+LPEAV FWEQALMVR+T++   L
Sbjct: 119 RLDTDKFSLINNTILPEAVRFWEQALMVRQTKETIRL 155

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340709352|ref|XP_003393274.1| PREDICTED: leishmanolysin-like peptidase-like [Bombus terrestris]

 Score = 59.7 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 27/36 (75%), Positives = 32/36 (88%), Gaps = 1/36 (2%)

Query: 4   RLDAEKFQLINNTVLPEAVHFWEQALMVRKTEKNTV 39
           RLD EK  LINNT+LPEAVHFWE+ALMVR+T K+T+
Sbjct: 94  RLDDEKLDLINNTILPEAVHFWERALMVRET-KSTI 128

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350412280|ref|XP_003489595.1| PREDICTED: leishmanolysin-like peptidase-like [Bombus impatiens]

 Score = 59.7 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/37 (70%), Positives = 30/37 (81%)

Query: 4   RLDAEKFQLINNTVLPEAVHFWEQALMVRKTEKNTVL 40
           RLD EK  LINNT+LPEAVHFWE+ALMVR+T+    L
Sbjct: 94  RLDDEKLDLINNTILPEAVHFWERALMVRETKSTIRL 130

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328792845|ref|XP_393414.4| PREDICTED: leishmanolysin-like peptidase [Apis mellifera]

 Score = 59.7 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/37 (70%), Positives = 30/37 (81%)

Query: 4   RLDAEKFQLINNTVLPEAVHFWEQALMVRKTEKNTVL 40
           RLD EK  LINNT+LPEAVHFWE+ALMVR+T+    L
Sbjct: 94  RLDDEKLDLINNTILPEAVHFWERALMVRETKSTIRL 130

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195572047|ref|XP_002104011.1| GD18672 [Drosophila simulans] gi|194199938|gb|EDX13514.1| GD18672 [Drosophila simulans]

 Score = 58.2 bits (139), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 25/32 (78%), Positives = 29/32 (90%)

Query: 4   RLDAEKFQLINNTVLPEAVHFWEQALMVRKTE 35
           RL+ EKF LIN+TVLPEAV FWEQALMVR+T+
Sbjct: 102 RLEEEKFNLINDTVLPEAVQFWEQALMVRETK 133

Source: Drosophila simulans

Species: Drosophila simulans

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383861831|ref|XP_003706388.1| PREDICTED: leishmanolysin-like peptidase-like [Megachile rotundata]

 Score = 58.2 bits (139), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 24/32 (75%), Positives = 29/32 (90%)

Query: 4   RLDAEKFQLINNTVLPEAVHFWEQALMVRKTE 35
           RLD EK  +INNT+LPEAVHFWE+ALMVR+T+
Sbjct: 94  RLDDEKLDVINNTILPEAVHFWERALMVRETK 125

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195054160|ref|XP_001993994.1| GH18015 [Drosophila grimshawi] gi|193895864|gb|EDV94730.1| GH18015 [Drosophila grimshawi]

 Score = 58.2 bits (139), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 25/32 (78%), Positives = 29/32 (90%)

Query: 4   RLDAEKFQLINNTVLPEAVHFWEQALMVRKTE 35
           RL+ EKF LIN+TVLPEAV FWEQALMVR+T+
Sbjct: 90  RLEEEKFNLINDTVLPEAVQFWEQALMVRETK 121

Source: Drosophila grimshawi

Species: Drosophila grimshawi

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194902447|ref|XP_001980700.1| GG17434 [Drosophila erecta] gi|190652403|gb|EDV49658.1| GG17434 [Drosophila erecta]

 Score = 58.2 bits (139), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 25/32 (78%), Positives = 29/32 (90%)

Query: 4   RLDAEKFQLINNTVLPEAVHFWEQALMVRKTE 35
           RL+ EKF LIN+TVLPEAV FWEQALMVR+T+
Sbjct: 80  RLEEEKFNLINDTVLPEAVQFWEQALMVRETK 111

Source: Drosophila erecta

Species: Drosophila erecta

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|21357023|ref|NP_652072.1| invadolysin [Drosophila melanogaster] gi|74869042|sp|Q9VH19.2|LMLN_DROME RecName: Full=Leishmanolysin-like peptidase; AltName: Full=Invadolysin gi|7211779|gb|AAF40433.1| IX-14 protein [Drosophila melanogaster] gi|23170882|gb|AAF54501.2| invadolysin [Drosophila melanogaster] gi|25013069|gb|AAN71624.1| RH66426p [Drosophila melanogaster] gi|220949452|gb|ACL87269.1| Invadolysin-PA [synthetic construct]

 Score = 58.2 bits (139), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 25/32 (78%), Positives = 29/32 (90%)

Query: 4   RLDAEKFQLINNTVLPEAVHFWEQALMVRKTE 35
           RL+ EKF LIN+TVLPEAV FWEQALMVR+T+
Sbjct: 92  RLEEEKFNLINDTVLPEAVQFWEQALMVRETK 123

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	64
FB|FBgn0086359	683	Invadolysin "Invadolysin" [Dro	0.5	0.046	0.781	1.9e-07
UNIPROTKB|Q29AK2	684	GA17800 "Leishmanolysin-like p	0.5	0.046	0.781	1.9e-07

FB|FBgn0086359 Invadolysin "Invadolysin" [Drosophila melanogaster (taxid:7227)]

 Score = 130 (50.8 bits), Expect = 1.9e-07, P = 1.9e-07
 Identities = 25/32 (78%), Positives = 29/32 (90%)

Query:     4 RLDAEKFQLINNTVLPEAVHFWEQALMVRKTE 35
             RL+ EKF LIN+TVLPEAV FWEQALMVR+T+
Sbjct:    92 RLEEEKFNLINDTVLPEAVQFWEQALMVRETK 123

GO:0004222 "metalloendopeptidase activity" evidence=ISS;IDA

GO:0007155 "cell adhesion" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0007444 "imaginal disc development" evidence=IMP

GO:0045842 "positive regulation of mitotic metaphase/anaphase transition" evidence=IMP

GO:0031252 "cell leading edge" evidence=ISS

GO:0008233 "peptidase activity" evidence=IDA

GO:0008354 "germ cell migration" evidence=IMP

GO:0007052 "mitotic spindle organization" evidence=IMP

GO:0006338 "chromatin remodeling" evidence=IMP

GO:0007100 "mitotic centrosome separation" evidence=IMP

GO:0007076 "mitotic chromosome condensation" evidence=IMP

GO:0005737 "cytoplasm" evidence=IDA

GO:0008406 "gonad development" evidence=IMP

GO:0051298 "centrosome duplication" evidence=IMP

GO:0007420 "brain development" evidence=IMP

GO:0051225 "spindle assembly" evidence=IMP

UNIPROTKB|Q29AK2 GA17800 "Leishmanolysin-like peptidase" [Drosophila pseudoobscura pseudoobscura (taxid:46245)]

 Score = 130 (50.8 bits), Expect = 1.9e-07, P = 1.9e-07
 Identities = 25/32 (78%), Positives = 29/32 (90%)

Query:     4 RLDAEKFQLINNTVLPEAVHFWEQALMVRKTE 35
             RL+ EKF LIN+TVLPEAV FWEQALMVR+T+
Sbjct:    92 RLEEEKFNLINDTVLPEAVQFWEQALMVRETK 123

GO:0005737 "cytoplasm" evidence=ISS

GO:0006338 "chromatin remodeling" evidence=ISS

GO:0007052 "mitotic spindle organization" evidence=ISS

GO:0007076 "mitotic chromosome condensation" evidence=ISS

GO:0007100 "mitotic centrosome separation" evidence=ISS

GO:0007420 "brain development" evidence=ISS

GO:0007444 "imaginal disc development" evidence=ISS

GO:0008233 "peptidase activity" evidence=ISS

GO:0008354 "germ cell migration" evidence=ISS

GO:0008406 "gonad development" evidence=ISS

GO:0045842 "positive regulation of mitotic metaphase/anaphase transition" evidence=ISS

GO:0051298 "centrosome duplication" evidence=ISS

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9VH19	LMLN_DROME	3, ., 4, ., 2, 4, ., -	0.7812	0.5	0.0468	yes	N/A
Q29AK2	LMLN_DROPS	3, ., 4, ., 2, 4, ., -	0.7812	0.5	0.0467	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	64
KOG2556|consensus	666		98.47
PTZ00257	622	Glycoprotein GP63 (leishmanolysin); Provisional	96.99
KOG2556|consensus	666		96.88
PTZ00337	567	surface protease GP63; Provisional	96.78
PF01457	521	Peptidase_M8: Leishmanolysin This Prosite motif co	94.15
PTZ00337	567	surface protease GP63; Provisional	83.98

>KOG2556|consensus

Probab=98.47  E-value=1.6e-08  Score=81.09  Aligned_cols=52  Identities=17%  Similarity=0.077  Sum_probs=46.8

Q ss_pred             cccchHHHHHHHhhcchhhHHHHHHHHHhhhhhcccccchhhH---HHHHHHHhh
Q psy9049           2 KVRLDAEKFQLINNTVLPEAVHFWEQALMVRKTEKNTVLPEAV---HFWEQALMV   53 (64)
Q Consensus         2 ~~~l~~ek~~lv~~~llPeav~y~e~~l~VR~~v~~iLLpRac---~y~~~~~~V   53 (64)
                      |+.|.+|+..+|+++|+|||+.|||.+|+||+...+|+|.|.|   .|+.+..|-
T Consensus        93 Ve~l~~e~~n~v~s~l~pea~~y~e~~~~vr~~a~~i~L~R~C~~~~y~~K~g~p  147 (666)
T KOG2556|consen   93 VEKLFHENGNVVLSVLDPEADVYQEIRIYVRYDAVGISLDRDCQRVGYIVKLGEP  147 (666)
T ss_pred             HHHHhHhhchhhhhhcChhhhhcceeeEEEecCCcceeeehhhhhhhhhhhcCCC
Confidence            5789999999999999999999999999999999999999999   566665554

>PTZ00257 Glycoprotein GP63 (leishmanolysin); Provisional

Probab=96.99  E-value=0.00043  Score=56.21  Aligned_cols=40  Identities=20%  Similarity=0.287  Sum_probs=37.2

Q ss_pred             ccchHHHHHHHhhcchhhHHHHHHHHHhhhhhcccccchh
Q psy9049           3 VRLDAEKFQLINNTVLPEAVHFWEQALMVRKTEKNTVLPE   42 (64)
Q Consensus         3 ~~l~~ek~~lv~~~llPeav~y~e~~l~VR~~v~~iLLpR   42 (64)
                      |=|++||+++++++|+|+|+.+|.+.|.||++.+++.+|.
T Consensus       144 DILT~eK~~il~~tllP~avk~~~erL~Vrp~~~~i~v~~  183 (622)
T PTZ00257        144 DILTEEKRDILVSYLIPQALQLHVERLRVRQVQGSWRVTG  183 (622)
T ss_pred             cccCHHHHHHHHHHhHHHHHHHHHHhheeecCCCCeEeec
Confidence            5689999999999999999999999999999999998874

>KOG2556|consensus

Probab=96.88  E-value=0.00017  Score=58.44  Aligned_cols=34  Identities=26%  Similarity=0.225  Sum_probs=32.1

Q ss_pred             hhhhcccccchhhHHHHHHHHhhhhccceeeecC
Q psy9049          31 VRKTEKNTVLPEAVHFWEQALMVRKTEKVIRLNR   64 (64)
Q Consensus        31 VR~~v~~iLLpRac~y~~~~~~VR~~~~~ilL~R   64 (64)
                      +-..++++++|+|..||+.+++||..+++|+|+|
T Consensus       100 ~~n~v~s~l~pea~~y~e~~~~vr~~a~~i~L~R  133 (666)
T KOG2556|consen  100 NGNVVLSVLDPEADVYQEIRIYVRYDAVGISLDR  133 (666)
T ss_pred             hchhhhhhcChhhhhcceeeEEEecCCcceeeeh
Confidence            4578999999999999999999999999999998

>PTZ00337 surface protease GP63; Provisional

Probab=96.78  E-value=0.00064  Score=54.34  Aligned_cols=40  Identities=25%  Similarity=0.430  Sum_probs=37.2

Q ss_pred             ccchHHHHHHHhhcchhhHHHHHHHHHhhhhhcccccchh
Q psy9049           3 VRLDAEKFQLINNTVLPEAVHFWEQALMVRKTEKNTVLPE   42 (64)
Q Consensus         3 ~~l~~ek~~lv~~~llPeav~y~e~~l~VR~~v~~iLLpR   42 (64)
                      |-|++||++++.+.+||.|+.|+++.|.|+++.+++.+|+
T Consensus       120 DILT~eK~~~i~~~~lp~a~~~~~~~L~V~p~~~~i~v~~  159 (567)
T PTZ00337        120 DVLTEERRSIILRQTLPAAIQLHAERLSVRPVTRPVLIPR  159 (567)
T ss_pred             cccCHHHHHHHHHHHHHHHHHHHHHheEEecCCCCeeecc
Confidence            4589999999989999999999999999999999999885

>PF01457 Peptidase_M8: Leishmanolysin This Prosite motif covers only the active site

Probab=94.15  E-value=0.021  Score=44.43  Aligned_cols=40  Identities=30%  Similarity=0.376  Sum_probs=29.1

Q ss_pred             ccchHHHHHHHhhcchhhHHHHHHHHHhhhhhcccccchh
Q psy9049           3 VRLDAEKFQLINNTVLPEAVHFWEQALMVRKTEKNTVLPE   42 (64)
Q Consensus         3 ~~l~~ek~~lv~~~llPeav~y~e~~l~VR~~v~~iLLpR   42 (64)
                      |=|+++|++.+.+.++|.|++|+++.|.|+++.+++.+|.
T Consensus        98 dIlt~~k~~~l~~~~~~~~~~~~~~~l~V~~~~~~~~v~~  137 (521)
T PF01457_consen   98 DILTEEKRDTLIKTLIPNAVKLHSERLKVRPVCGNIKVPN  137 (521)
T ss_dssp             G---HHHHHHHHHTHHHHHHHHHHTTEEE--EESEE----
T ss_pred             ccccHHHHHHHHHHHhhhHHHHHHhhhcccccCCCcCccc
Confidence            3478889999999999999999999999999999998876

This is family M8 in the peptidase classification. ; InterPro: IPR001577 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M8 (leishmanolysin family, clan MA(M)). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA. Leishmanolysin is an enzyme found in the eukaryotes including Leishmania and related parasitic protozoa []. The endopeptidase is the most abundant protein on the cell surface during the promastigote stage of the parasite, and is attached to the membrane by a glycosylphosphatidylinositol anchor []. In the amastigote form, the parasite lives in lysosomes of host macrophages, producing a form of the protease that has an acidic pH optimum []. This differs from most other metalloproteases and may be an adaptation to the environment in which the organism survives [].; GO: 0004222 metalloendopeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis, 0007155 cell adhesion, 0016020 membrane; PDB: 1LML_A.

>PTZ00337 surface protease GP63; Provisional

Probab=83.98  E-value=0.54  Score=37.98  Aligned_cols=32  Identities=22%  Similarity=0.356  Sum_probs=28.2

Q ss_pred             hhhcccccchhhHHHHHHHHhhhhccceeeec
Q psy9049          32 RKTEKNTVLPEAVHFWEQALMVRKTEKVIRLN   63 (64)
Q Consensus        32 R~~v~~iLLpRac~y~~~~~~VR~~~~~ilL~   63 (64)
                      +..+.+.+||.+..|+++.+.|+++.+||.+.
T Consensus       127 ~~~i~~~~lp~a~~~~~~~L~V~p~~~~i~v~  158 (567)
T PTZ00337        127 RSIILRQTLPAAIQLHAERLSVRPVTRPVLIP  158 (567)
T ss_pred             HHHHHHHHHHHHHHHHHHheEEecCCCCeeec
Confidence            56666788999999999999999999999764

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	64
1lml_A	478	Leishmanolysin; metalloprotease, glycoprotein; 1.8	97.39
1lml_A	478	Leishmanolysin; metalloprotease, glycoprotein; 1.8	89.42

>1lml_A Leishmanolysin; metalloprotease, glycoprotein; 1.86A {Leishmania major} SCOP: d.92.1.3

Probab=97.39  E-value=3.2e-05  Score=58.48  Aligned_cols=40  Identities=20%  Similarity=0.332  Sum_probs=38.0

Q ss_pred             ccchHHHHHHHhhcchhhHHHHHHHHHhhhhhcccccchh
Q psy9049           3 VRLDAEKFQLINNTVLPEAVHFWEQALMVRKTEKNTVLPE   42 (64)
Q Consensus         3 ~~l~~ek~~lv~~~llPeav~y~e~~l~VR~~v~~iLLpR   42 (64)
                      |-|++||+++++++++|+|+.+|++.|+||++.++|.+++
T Consensus        47 DiLT~~k~~~l~~tllp~av~~~~~~L~V~p~~~~i~v~~   86 (478)
T 1lml_A           47 DILTNEKRDILVKHLIPQAVQLHTERLKVQQVQGKWKVTD   86 (478)
T ss_dssp             GCCCHHHHHHHHHTHHHHHHHHHHTTEEECCEESEECCCC
T ss_pred             ccCCHHHHHHHHHHHHHHHHHHHHHhhcccccCCCeEecC
Confidence            5699999999999999999999999999999999999986

>1lml_A Leishmanolysin; metalloprotease, glycoprotein; 1.86A {Leishmania major} SCOP: d.92.1.3

Probab=89.42  E-value=0.086  Score=39.80  Aligned_cols=33  Identities=18%  Similarity=0.350  Sum_probs=29.7

Q ss_pred             hhhcccccchhhHHHHHHHHhhhhccceeeecC
Q psy9049          32 RKTEKNTVLPEAVHFWEQALMVRKTEKVIRLNR   64 (64)
Q Consensus        32 R~~v~~iLLpRac~y~~~~~~VR~~~~~ilL~R   64 (64)
                      +......+||.|+.+|.+.+.||+..+||.+++
T Consensus        54 ~~~l~~tllp~av~~~~~~L~V~p~~~~i~v~~   86 (478)
T 1lml_A           54 RDILVKHLIPQAVQLHTERLKVQQVQGKWKVTD   86 (478)
T ss_dssp             HHHHHHTHHHHHHHHHHTTEEECCEESEECCCC
T ss_pred             HHHHHHHHHHHHHHHHHHhhcccccCCCeEecC
Confidence            777888899999999999999999999998763

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	64
d1lmla_	475	d.92.1.3 (A:) Leishmanolysin {Leishmania major [Ta	4e-08
d1lmla_	475	d.92.1.3 (A:) Leishmanolysin {Leishmania major [Ta	3e-05

>d1lmla_ d.92.1.3 (A:) Leishmanolysin {Leishmania major [TaxId: 5664]} Length = 475

class: Alpha and beta proteins (a+b)
fold: Zincin-like
superfamily: Metalloproteases ("zincins"), catalytic domain
family: Leishmanolysin
domain: Leishmanolysin
species: Leishmania major [TaxId: 5664]

 Score = 45.2 bits (106), Expect = 4e-08
 Identities = 8/37 (21%), Positives = 18/37 (48%)

Query: 5  LDAEKFQLINNTVLPEAVHFWEQALMVRKTEKNTVLP 41
          L  EK  ++   ++P+AV    + L V++ +    + 
Sbjct: 49 LTNEKRDILVKHLIPQAVQLHTERLKVQQVQGKWKVT 85

>d1lmla_ d.92.1.3 (A:) Leishmanolysin {Leishmania major [TaxId: 5664]} Length = 475

class: Alpha and beta proteins (a+b)
fold: Zincin-like
superfamily: Metalloproteases ("zincins"), catalytic domain
family: Leishmanolysin
domain: Leishmanolysin
species: Leishmania major [TaxId: 5664]

 Score = 37.1 bits (85), Expect = 3e-05
 Identities = 6/33 (18%), Positives = 15/33 (45%)

Query: 32 RKTEKNTVLPEAVHFWEQALMVRKTEKVIRLNR 64
          R      ++P+AV    + L V++ +   ++  
Sbjct: 54 RDILVKHLIPQAVQLHTERLKVQQVQGKWKVTD 86

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	64
d1lmla_	475	Leishmanolysin {Leishmania major [TaxId: 5664]}	97.0
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	82.89
d1lmla_	475	Leishmanolysin {Leishmania major [TaxId: 5664]}	81.68

>d1lmla_ d.92.1.3 (A:) Leishmanolysin {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a+b)
fold: Zincin-like
superfamily: Metalloproteases ("zincins"), catalytic domain
family: Leishmanolysin
domain: Leishmanolysin
species: Leishmania major [TaxId: 5664]

Probab=97.00  E-value=6.7e-05  Score=54.47  Aligned_cols=41  Identities=20%  Similarity=0.319  Sum_probs=37.8

Q ss_pred             ccchHHHHHHHhhcchhhHHHHHHHHHhhhhhcccccchhh
Q psy9049           3 VRLDAEKFQLINNTVLPEAVHFWEQALMVRKTEKNTVLPEA   43 (64)
Q Consensus         3 ~~l~~ek~~lv~~~llPeav~y~e~~l~VR~~v~~iLLpRa   43 (64)
                      |=|++||++.+.++++|.|+.||+++|.|+++.++|.++..
T Consensus        47 Dilt~~k~~~l~~~~~~~~~~~~~~~L~V~p~~~~i~~~~~   87 (475)
T d1lmla_          47 DILTNEKRDILVKHLIPQAVQLHTERLKVQQVQGKWKVTDM   87 (475)
T ss_dssp             GCCCHHHHHHHHHTHHHHHHHHHHTTEEECCEESEECCCCC
T ss_pred             cccCHHHHHHHHHHHHHHHHHHHHHHheeecCCCCeEeccc
Confidence            45899999999999999999999999999999999988764

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.89  E-value=1.9  Score=22.93  Aligned_cols=49  Identities=14%  Similarity=0.042  Sum_probs=35.4

Q ss_pred             HHHhhcchhhHHHHHHHHHhhhhhcccc-------------------cchhhHHHHHHHHhhhhccce
Q psy9049          11 QLINNTVLPEAVHFWEQALMVRKTEKNT-------------------VLPEAVHFWEQALMVRKTEKV   59 (64)
Q Consensus        11 ~lv~~~llPeav~y~e~~l~VR~~v~~i-------------------LLpRac~y~~~~~~VR~~~~~   59 (64)
                      .+.+..=..+|+.++++|+..-+-....                   -+.+|+.+|++++...|....
T Consensus        14 ~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~   81 (95)
T d1tjca_          14 VAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQR   81 (95)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHH
Confidence            4455666799999999999875432211                   358889999999998876543

>d1lmla_ d.92.1.3 (A:) Leishmanolysin {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a+b)
fold: Zincin-like
superfamily: Metalloproteases ("zincins"), catalytic domain
family: Leishmanolysin
domain: Leishmanolysin
species: Leishmania major [TaxId: 5664]

Probab=81.68  E-value=0.17  Score=36.04  Aligned_cols=33  Identities=18%  Similarity=0.350  Sum_probs=28.9

Q ss_pred             hhhcccccchhhHHHHHHHHhhhhccceeeecC
Q psy9049          32 RKTEKNTVLPEAVHFWEQALMVRKTEKVIRLNR   64 (64)
Q Consensus        32 R~~v~~iLLpRac~y~~~~~~VR~~~~~ilL~R   64 (64)
                      +......++|.+..||++.+.|++..++|.+++
T Consensus        54 ~~~l~~~~~~~~~~~~~~~L~V~p~~~~i~~~~   86 (475)
T d1lmla_          54 RDILVKHLIPQAVQLHTERLKVQQVQGKWKVTD   86 (475)
T ss_dssp             HHHHHHTHHHHHHHHHHTTEEECCEESEECCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHheeecCCCCeEecc
Confidence            666677789999999999999999999998753