Psyllid ID: psy9056

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------36
Protein Sequence
MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAPLKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQTECKKNRLGKPQTPVKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPFKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPITKIAAASKRPDKVRNMGRI
Secondary Structure (PSIPRED)
ccccccccHHccccccEEEccccccccccccccccccccccccccccccccHHHHHHHHHccccccHHHHHHcccccEEccccccccccHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHcHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHccccccccccccEEEEEcccccHHHHHHHHHHccccEEEEEccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHccccccccccccccccEEEEEEccccHHHHHHHHHHHHHcccccEEEcccccccHHHHHHHccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccHHHHHHHHHccEEEEEcccEEEcHHHHHccccccccccHHHHHHcHHHHHHHHHHcccEEHHHHHHHccccEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHcccccHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHccccccccccccEEEEEcccHHHHHHHHHHHHcccEEEEEcccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHccccccHHHHccccEEEEEEEccHHHHHHHHHHHHHHccccEEEEEccccccHHHHHHHcccccHEEEcccc
Coil and Loop (DISEMBL)
mfaepslaTVALACHYRIVVkdkktglglpevmlgllpgaggtqrlpkltalpnvldmtltgktlkadkakkmgivdqlveplgpglnhpeerTMEYLEEVAVNTASQlasgklkinrtkpmipdkvLDVALKFEFVRNQIFGKAKEKVMKmsgglypaplkILDVVRTgiekgpsagyeaeaegfsqlamtpqskglMGLFRAQTEckknrlgkpqtpvKTVAVLGAGLMGAGIAHvtvdkgyntIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVgtlsydpfknADMVIEAVFEDINIKHQVIKEIeavvpphcvvatntsaipitkiaaaskrpdkvrnmgri
Flexible Loop (DISEMBL)
mfaepslaTVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKtlkadkakkmGIVDQlveplgpglnhPEERTMEYLEEVAVNTAsqlasgklkinrtkpmipdKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAPLKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQTECkknrlgkpqtpVKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLArglgqiktgldgavkrkkmsaldrDRYLASLVgtlsydpfKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVatntsaipitkiaaaskrpdkvrnmgri
Low Complexity Region (SEG)
MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAPLKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQTECKKNRLGKPQTPVKTvavlgaglmgagiaHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPFKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPITKIAAASKRPDKVRNMGRI
Disordered region (IsUnstruct)
******LATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEP**************YLEEVAVNTASQLASGKLKINRTKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAPLKILDVVRTGIE**************************MGLFRA*************TPVKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPFKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPITKIA***************
Disordered Region (DISOPRED)
**AEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLAS****************LDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAPLKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQTE************VKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGL*****************LASLVGTLSYDPFKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPITKIAAASKRPDKVRNMGRI
Disordered Region (DISEMBL)
MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAPLKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQTECKKNRLGKPQTPVKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPFKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPITKIAAASKRPDKVRNMGRI
Disordered Region (DISPRO)
*FAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAPLKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQTECKKNRLGKPQTPVKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPFKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPITKIAAASKRPDKVRNMGRI
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAPLKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQTECKKNRLGKPQTPVKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPFKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPITKIAAASKRPDKVRNMGRI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	359	2.2.26 [Sep-21-2011]
Q29554	763	Trifunctional enzyme subu	yes	N/A	0.963	0.453	0.587	1e-116
P40939	763	Trifunctional enzyme subu	yes	N/A	0.963	0.453	0.579	1e-115
Q64428	763	Trifunctional enzyme subu	yes	N/A	0.963	0.453	0.561	1e-114
Q8BMS1	763	Trifunctional enzyme subu	yes	N/A	0.963	0.453	0.561	1e-114
A8A2L0	714	Fatty acid oxidation comp	yes	N/A	0.896	0.450	0.410	2e-63
A4WCW6	715	Fatty acid oxidation comp	yes	N/A	0.896	0.450	0.416	3e-60
A8ADP2	715	Fatty acid oxidation comp	yes	N/A	0.896	0.450	0.421	1e-58
A9N453	715	Fatty acid oxidation comp	yes	N/A	0.896	0.450	0.416	9e-58
Q8XCP2	714	Fatty acid oxidation comp	N/A	N/A	0.896	0.450	0.413	9e-58
Q8ZNA7	715	Fatty acid oxidation comp	yes	N/A	0.896	0.450	0.416	9e-58

>sp|Q29554|ECHA_PIG Trifunctional enzyme subunit alpha, mitochondrial OS=Sus scrofa GN=HADHA PE=1 SV=1

 Score =  418 bits (1074), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 204/347 (58%), Positives = 264/347 (76%), Gaps = 1/347 (0%)

Query: 10  VALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADK 69
           +A++C YRI  KDKKT LG PEV+LG+LPGAGGTQRLPK+  +P   DM LTG+ ++ADK
Sbjct: 152 LAISCQYRIATKDKKTVLGAPEVLLGILPGAGGTQRLPKMVGVPAAFDMMLTGRGIRADK 211

Query: 70  AKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLD 129
           AKKMG+VDQLVEPLGPGL  PEERT+EYLEEVAV  A  LA  K+   R K ++ +K+  
Sbjct: 212 AKKMGLVDQLVEPLGPGLKPPEERTIEYLEEVAVTFAKGLADKKISPKRDKGLV-EKLTS 270

Query: 130 VALKFEFVRNQIFGKAKEKVMKMSGGLYPAPLKILDVVRTGIEKGPSAGYEAEAEGFSQL 189
            A+   FVR QI+ K +EKV K + GLYPAPLKI+DVV+TGIE+G  AGY +E++ F +L
Sbjct: 271 YAMSIPFVRQQIYKKVEEKVRKQTKGLYPAPLKIIDVVKTGIEQGSDAGYLSESQKFGEL 330

Query: 190 AMTPQSKGLMGLFRAQTECKKNRLGKPQTPVKTVAVLGAGLMGAGIAHVTVDKGYNTIVK 249
           AMT +SK LMGL+R QT CKKN+ G PQ  VK +A+LGAGLMGAGIA V+VDK   TI+K
Sbjct: 331 AMTKESKALMGLYRGQTLCKKNKFGAPQKEVKHLAILGAGLMGAGIAQVSVDKHLKTILK 390

Query: 250 DSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPFKNADMVIEAVFE 309
           D+    L RG  Q+  GL+  V++K +++ +RD   ++L G L Y  F+ ADMVIEAVFE
Sbjct: 391 DASLPALGRGQQQVFKGLNDKVRKKALTSFERDSLFSNLTGQLDYQGFEKADMVIEAVFE 450

Query: 310 DINIKHQVIKEIEAVVPPHCVVATNTSAIPITKIAAASKRPDKVRNM 356
           ++++KH+V+KE+EAV+P HCV A+NTSA+PI++IAA SKRP+KV  M
Sbjct: 451 ELSLKHKVLKEVEAVIPDHCVFASNTSALPISEIAAVSKRPEKVIGM 497

Bifunctional subunit; cannot use crotonyl-CoA or 3-hydroxybutyryl-CoA as substrate.
Sus scrofa (taxid: 9823)
EC: 1EC: .EC: 1EC: .EC: 1EC: .EC: 2EC: 1EC: 1

>sp|P40939|ECHA_HUMAN Trifunctional enzyme subunit alpha, mitochondrial OS=Homo sapiens GN=HADHA PE=1 SV=2

 Score =  415 bits (1066), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 201/347 (57%), Positives = 262/347 (75%), Gaps = 1/347 (0%)

Query: 10  VALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADK 69
           VA++C YRI  KD+KT LG PEV+LG LPGAGGTQRLPK+  +P  LDM LTG++++AD+
Sbjct: 152 VAISCQYRIATKDRKTVLGTPEVLLGALPGAGGTQRLPKMVGVPAALDMMLTGRSIRADR 211

Query: 70  AKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLD 129
           AKKMG+VDQLVEPLGPGL  PEERT+EYLEEVA+  A  LA  K+   R K ++ +K+  
Sbjct: 212 AKKMGLVDQLVEPLGPGLKPPEERTIEYLEEVAITFAKGLADKKISPKRDKGLV-EKLTA 270

Query: 130 VALKFEFVRNQIFGKAKEKVMKMSGGLYPAPLKILDVVRTGIEKGPSAGYEAEAEGFSQL 189
            A+   FVR Q++ K +EKV K + GLYPAPLKI+DVV+TGIE+G  AGY  E++ F +L
Sbjct: 271 YAMTIPFVRQQVYKKVEEKVRKQTKGLYPAPLKIIDVVKTGIEQGSDAGYLCESQKFGEL 330

Query: 190 AMTPQSKGLMGLFRAQTECKKNRLGKPQTPVKTVAVLGAGLMGAGIAHVTVDKGYNTIVK 249
            MT +SK LMGL+  Q  CKKN+ G PQ  VK +A+LGAGLMGAGIA V+VDKG  TI+K
Sbjct: 331 VMTKESKALMGLYHGQVLCKKNKFGAPQKDVKHLAILGAGLMGAGIAQVSVDKGLKTILK 390

Query: 250 DSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPFKNADMVIEAVFE 309
           D+    L RG  Q+  GL+  VK+K +++ +RD   ++L G L Y  F+ ADMVIEAVFE
Sbjct: 391 DATLTALDRGQQQVFKGLNDKVKKKALTSFERDSIFSNLTGQLDYQGFEKADMVIEAVFE 450

Query: 310 DINIKHQVIKEIEAVVPPHCVVATNTSAIPITKIAAASKRPDKVRNM 356
           D+++KH+V+KE+EAV+P HC+ A+NTSA+PI++IAA SKRP+KV  M
Sbjct: 451 DLSLKHRVLKEVEAVIPDHCIFASNTSALPISEIAAVSKRPEKVIGM 497

Bifunctional subunit.

Homo sapiens (taxid: 9606)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 1

EC: 1

>sp|Q64428|ECHA_RAT Trifunctional enzyme subunit alpha, mitochondrial OS=Rattus norvegicus GN=Hadha PE=1 SV=2

 Score =  412 bits (1060), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 195/347 (56%), Positives = 263/347 (75%), Gaps = 1/347 (0%)

Query: 10  VALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADK 69
           +A+AC YRI  KD+KT LG+PEV+LG+LPGAGGTQRLPK+  +P   DM LTG+ ++AD+
Sbjct: 152 LAIACQYRIATKDRKTVLGVPEVLLGILPGAGGTQRLPKMVGVPAAFDMMLTGRNIRADR 211

Query: 70  AKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLD 129
           AKKMG+VDQLV+PLGPG+  PEERT+EYLEEVAVN A  LA  K+   ++K ++ +K+  
Sbjct: 212 AKKMGLVDQLVDPLGPGIKSPEERTIEYLEEVAVNFAKGLADRKVSAKQSKGLM-EKLTS 270

Query: 130 VALKFEFVRNQIFGKAKEKVMKMSGGLYPAPLKILDVVRTGIEKGPSAGYEAEAEGFSQL 189
            A+   FVR Q++   +EKV K + GLYPAPLKI+D V+TG+E+G  AGY AE+E F +L
Sbjct: 271 YAMTIPFVRQQVYKTVEEKVKKQTKGLYPAPLKIIDAVKTGLEQGNDAGYLAESEKFGEL 330

Query: 190 AMTPQSKGLMGLFRAQTECKKNRLGKPQTPVKTVAVLGAGLMGAGIAHVTVDKGYNTIVK 249
           A+T +SK LMGL+  Q  CKKN+ G PQ  V+ +A+LGAGLMGAGIA V+VDKG  T++K
Sbjct: 331 ALTKESKALMGLYNGQVLCKKNKFGAPQKTVQQLAILGAGLMGAGIAQVSVDKGLKTLLK 390

Query: 250 DSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPFKNADMVIEAVFE 309
           D+   GL RG  Q+  GL+  VK+K +++ +RD   ++L+G L Y  F+ ADMVIEAVFE
Sbjct: 391 DTTVTGLGRGQQQVFKGLNDKVKKKALTSFERDSIFSNLIGQLDYKGFEKADMVIEAVFE 450

Query: 310 DINIKHQVIKEIEAVVPPHCVVATNTSAIPITKIAAASKRPDKVRNM 356
           D+ +KH+V+KE+E+V P HC+ A+NTSA+PI +IAA S+RP+KV  M
Sbjct: 451 DLAVKHKVLKEVESVTPEHCIFASNTSALPINQIAAVSQRPEKVIGM 497

Bifunctional subunit.

Rattus norvegicus (taxid: 10116)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 1

EC: 1

>sp|Q8BMS1|ECHA_MOUSE Trifunctional enzyme subunit alpha, mitochondrial OS=Mus musculus GN=Hadha PE=1 SV=1

 Score =  412 bits (1059), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 195/347 (56%), Positives = 262/347 (75%), Gaps = 1/347 (0%)

Query: 10  VALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADK 69
           +A+AC YRI  KD+KT LG+PEV+LG+LPGAGGTQRLPK+  +P   DM LTG+ ++AD+
Sbjct: 152 LAIACQYRIATKDRKTVLGVPEVLLGILPGAGGTQRLPKMVGVPAAFDMMLTGRNIRADR 211

Query: 70  AKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLD 129
           AKKMG+VDQLVEPLGPG+  PEERT+EYLEEVAVN A  LA  K+   ++K ++ +K+  
Sbjct: 212 AKKMGLVDQLVEPLGPGIKSPEERTIEYLEEVAVNFAKGLADRKVSAKQSKGLV-EKLTT 270

Query: 130 VALKFEFVRNQIFGKAKEKVMKMSGGLYPAPLKILDVVRTGIEKGPSAGYEAEAEGFSQL 189
            A+   FVR Q++   +EKV K + GLYPAPLKI+D V+ G+E+G  AGY AE++ F +L
Sbjct: 271 YAMTVPFVRQQVYKTVEEKVKKQTKGLYPAPLKIIDAVKAGLEQGSDAGYLAESQKFGEL 330

Query: 190 AMTPQSKGLMGLFRAQTECKKNRLGKPQTPVKTVAVLGAGLMGAGIAHVTVDKGYNTIVK 249
           A+T +SK LMGL+  Q  CKKN+ G PQ  V+ +A+LGAGLMGAGIA V+VDKG  T++K
Sbjct: 331 ALTKESKALMGLYNGQVLCKKNKFGAPQKNVQQLAILGAGLMGAGIAQVSVDKGLKTLLK 390

Query: 250 DSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPFKNADMVIEAVFE 309
           D+   GL RG  Q+  GL+  VK+K +++ +RD   ++L+G L Y  F+ ADMVIEAVFE
Sbjct: 391 DTTVTGLGRGQQQVFKGLNDKVKKKALTSFERDSIFSNLIGQLDYKGFEKADMVIEAVFE 450

Query: 310 DINIKHQVIKEIEAVVPPHCVVATNTSAIPITKIAAASKRPDKVRNM 356
           D+ +KH+V+KE+E+V P HC+ A+NTSA+PI +IAA SKRP+KV  M
Sbjct: 451 DLGVKHKVLKEVESVTPEHCIFASNTSALPINQIAAVSKRPEKVIGM 497

Bifunctional subunit.

Mus musculus (taxid: 10090)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 1

EC: 1

>sp|A8A2L0|FADJ_ECOHS Fatty acid oxidation complex subunit alpha OS=Escherichia coli O9:H4 (strain HS) GN=fadJ PE=3 SV=1

 Score =  243 bits (619), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 142/346 (41%), Positives = 205/346 (59%), Gaps = 24/346 (6%)

Query: 10  VALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADK 69
           +ALACH R+   D KT LGLPEV LGLLPG+GGTQRLP+L  +   L+M LTGK L+A +
Sbjct: 119 LALACHGRVCTDDPKTVLGLPEVQLGLLPGSGGTQRLPRLIGVSTALEMILTGKQLRAKQ 178

Query: 70  AKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLD 129
           A K+G+VD +V                    + +  A +LA      +R  P + +++L 
Sbjct: 179 ALKLGLVDDVVP-----------------HSILLEAAVELAKKDRPSSRPLP-VRERILA 220

Query: 130 VALKFEFVRNQIFGKAKEKVMKMSGGLYPAPLKILDVVRTGIEKGPSAGYEAEAEGFSQL 189
             L     R  +F    +K    + G YPA  +IL+VV TG+ +G S+GY+AEA  F +L
Sbjct: 221 GPLG----RALLFKMVGKKTEHKTQGNYPATERILEVVETGLAQGTSSGYDAEARAFGEL 276

Query: 190 AMTPQSKGLMGLFRAQTECKKN-RLGKPQTPVKTVAVLGAGLMGAGIAHVTVDK-GYNTI 247
           AMTPQS+ L  +F A T+ KK+     P  P+ +V +LG GLMGAGIA+VT  K G    
Sbjct: 277 AMTPQSQALRSIFFASTDVKKDPGSDAPPAPLNSVGILGGGLMGAGIAYVTACKAGLPVR 336

Query: 248 VKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPFKNADMVIEAV 307
           +KD   +G+   L      L+G V+R+ + A +RD+ LA + GT  Y  F + D++IEAV
Sbjct: 337 IKDINPQGINHALKYSWDQLEGKVRRRHLKASERDKQLALISGTTDYRGFAHRDLIIEAV 396

Query: 308 FEDINIKHQVIKEIEAVVPPHCVVATNTSAIPITKIAAASKRPDKV 353
           FE++ +K Q++ E+E     H + A+NTS++PI  IAA + RP++V
Sbjct: 397 FENLELKQQMVAEVEQNCAAHTIFASNTSSLPIGDIAAHAARPEQV 442

Catalyzes the formation of an hydroxyacyl-CoA by addition of water on enoyl-CoA. Also exhibits 3-hydroxyacyl-CoA epimerase and 3-hydroxyacyl-CoA dehydrogenase activities.

Escherichia coli O9:H4 (strain HS) (taxid: 331112)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 5

>sp|A4WCW6|FADJ_ENT38 Fatty acid oxidation complex subunit alpha OS=Enterobacter sp. (strain 638) GN=fadJ PE=3 SV=1

 Score =  232 bits (591), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 144/346 (41%), Positives = 209/346 (60%), Gaps = 24/346 (6%)

Query: 10  VALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADK 69
           +ALACH R+   D KT LGLPEV LGLLPG+GGTQRLP+L  +   L+M LTGK L+  +
Sbjct: 119 LALACHSRVCTDDAKTVLGLPEVQLGLLPGSGGTQRLPRLVGVSTALEMILTGKQLRPRQ 178

Query: 70  AKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLD 129
           A K+G+VD++V                    + +  A +LA  + + +R  P + +++L 
Sbjct: 179 ALKVGLVDEVVP-----------------HSILLTAAVELAQKERQASRHLP-VRERILA 220

Query: 130 VALKFEFVRNQIFGKAKEKVMKMSGGLYPAPLKILDVVRTGIEKGPSAGYEAEAEGFSQL 189
             L     R  +F +  +K  + + G YPA  +ILDV+ TG+ +G S+GY AEA+ F +L
Sbjct: 221 GPLG----RALLFNRVGKKTEQKTKGNYPATKRILDVIETGLSQGSSSGYAAEAKAFGEL 276

Query: 190 AMTPQSKGLMGLFRAQTECKKNRLGK-PQTPVKTVAVLGAGLMGAGIAHVTVDKGYNTI- 247
           AMTPQS+ L  +F A TE KK+   +    P+  + VLG GLMG GI+ VT  KG   + 
Sbjct: 277 AMTPQSQALRSIFFASTEVKKDPGSEVAPGPLNAIGVLGGGLMGGGISFVTASKGKLPVR 336

Query: 248 VKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPFKNADMVIEAV 307
           +KD   KG+   L      LD  VKR+ + A +RDR LA + GT+ +  FK+ D+VIEAV
Sbjct: 337 IKDINAKGINHALQYSWQLLDQKVKRRHIKASERDRALALISGTIDFSGFKHRDVVIEAV 396

Query: 308 FEDINIKHQVIKEIEAVVPPHCVVATNTSAIPITKIAAASKRPDKV 353
           FED+ +K Q++ ++E    PH + A+NTS++PI  IAA + RP++V
Sbjct: 397 FEDLQLKQQMVADVEQYCAPHTIFASNTSSLPIGDIAANAARPEQV 442

Catalyzes the formation of an hydroxyacyl-CoA by addition of water on enoyl-CoA. Also exhibits 3-hydroxyacyl-CoA epimerase and 3-hydroxyacyl-CoA dehydrogenase activities.

Enterobacter sp. (strain 638) (taxid: 399742)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 5

>sp|A8ADP2|FADJ_CITK8 Fatty acid oxidation complex subunit alpha OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) GN=fadJ PE=3 SV=1

 Score =  226 bits (577), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 146/346 (42%), Positives = 208/346 (60%), Gaps = 24/346 (6%)

Query: 10  VALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADK 69
           +ALACH RI   D KT LGLPEV LGLLPG+GGTQRLP+L  +   LDM LTGK L+  +
Sbjct: 119 MALACHRRICTDDAKTVLGLPEVQLGLLPGSGGTQRLPRLVGVSTALDMILTGKQLRPKQ 178

Query: 70  AKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLD 129
           A ++G+VD++V         P    +E   E+A+   S          R  P + +++L 
Sbjct: 179 ALRVGLVDEVV---------PHAILLEAAVELAIKGRSA--------QRNLP-VRERILA 220

Query: 130 VALKFEFVRNQIFGKAKEKVMKMSGGLYPAPLKILDVVRTGIEKGPSAGYEAEAEGFSQL 189
             L     R  +F    +K  + + G YPA  +IL+V+ TG+ +G S+GY+AEA  F +L
Sbjct: 221 GPLG----RTLLFRMVSKKTGQKTQGNYPATERILEVIETGLAQGSSSGYDAEARAFGEL 276

Query: 190 AMTPQSKGLMGLFRAQTECKKNRLGKPQT-PVKTVAVLGAGLMGAGIAHVTVDKGYNTI- 247
           AMTPQS+ L  +F A TE KK+     Q  P+ +V VLG GLMG GIA+VT  KG  ++ 
Sbjct: 277 AMTPQSQALRNIFFASTEVKKDPGSDAQPGPLASVGVLGGGLMGGGIAYVTACKGGLSVR 336

Query: 248 VKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPFKNADMVIEAV 307
           +KD   KG+   L      L+  V+R+ + A +RD+ LA + G+  Y  F + D+VIEAV
Sbjct: 337 IKDINAKGINHALKYSWDQLETKVRRRHIKAGERDKQLALISGSTDYRGFSHRDLVIEAV 396

Query: 308 FEDINIKHQVIKEIEAVVPPHCVVATNTSAIPITKIAAASKRPDKV 353
           FED+ +K Q++ E+E    PH + A+NTS++PI  IAA + RP++V
Sbjct: 397 FEDLALKQQMVAEVEQNCAPHTIFASNTSSLPIGDIAANAARPEQV 442

Catalyzes the formation of an hydroxyacyl-CoA by addition of water on enoyl-CoA. Also exhibits 3-hydroxyacyl-CoA epimerase and 3-hydroxyacyl-CoA dehydrogenase activities.

Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) (taxid: 290338)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 5

>sp|A9N453|FADJ_SALPB Fatty acid oxidation complex subunit alpha OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=fadJ PE=3 SV=1

 Score =  224 bits (571), Expect = 9e-58,   Method: Compositional matrix adjust.
 Identities = 144/346 (41%), Positives = 206/346 (59%), Gaps = 24/346 (6%)

Query: 10  VALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADK 69
           +ALACH RI   D KT LGLPEV LGLLPG+GGTQRLP+L  +   LDM LTGK L+A +
Sbjct: 119 MALACHRRICTDDVKTVLGLPEVQLGLLPGSGGTQRLPRLVGVSTALDMILTGKQLRARQ 178

Query: 70  AKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLD 129
           A K G+VD +V                  + + +  A +LA  +    RT P + +++L 
Sbjct: 179 ALKAGLVDDVVP-----------------QTILLEAAVELAKKERLAQRTLP-VRERILA 220

Query: 130 VALKFEFVRNQIFGKAKEKVMKMSGGLYPAPLKILDVVRTGIEKGPSAGYEAEAEGFSQL 189
             L     R  +F   ++K  + + G YPA  +I+DV+ TG+ +G S+GY+AEA  F +L
Sbjct: 221 GPLG----RALLFRLVRKKTAQKTQGNYPATERIIDVIETGLAQGSSSGYDAEARAFGEL 276

Query: 190 AMTPQSKGLMGLFRAQTECKKN-RLGKPQTPVKTVAVLGAGLMGAGIAHVTVDKGYNTI- 247
           AMTPQS+ L  +F A TE KK+     P  P+ +V +LG GLMG GIA VT  KG   + 
Sbjct: 277 AMTPQSQALRAIFFASTEVKKDPGSDAPPGPLNSVGILGGGLMGGGIAWVTACKGGLPVR 336

Query: 248 VKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPFKNADMVIEAV 307
           +KD   +G+   L      L+  V+R+ + A +RD+ LA + G+  Y  F + D+VIEAV
Sbjct: 337 IKDINTQGINHALKYSWDLLETKVRRRHIKASERDKQLALISGSTDYRGFSHRDLVIEAV 396

Query: 308 FEDINIKHQVIKEIEAVVPPHCVVATNTSAIPITKIAAASKRPDKV 353
           FED+ +K Q++ E+E     H + A+NTS++PI  IAA + RP++V
Sbjct: 397 FEDLPLKQQMVAEVEQNCAAHTIFASNTSSLPIGDIAANAARPEQV 442

Catalyzes the formation of an hydroxyacyl-CoA by addition of water on enoyl-CoA. Also exhibits 3-hydroxyacyl-CoA epimerase and 3-hydroxyacyl-CoA dehydrogenase activities.

Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) (taxid: 1016998)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 5

>sp|Q8XCP2|FADJ_ECO57 Fatty acid oxidation complex subunit alpha OS=Escherichia coli O157:H7 GN=fadJ PE=3 SV=1

 Score =  224 bits (571), Expect = 9e-58,   Method: Compositional matrix adjust.
 Identities = 143/346 (41%), Positives = 205/346 (59%), Gaps = 24/346 (6%)

Query: 10  VALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADK 69
           +ALACH R+   D KT LGLPEV LGLLPG+GGTQRLP+L  +   L+M LTGK L+A +
Sbjct: 119 LALACHGRVCTDDPKTVLGLPEVQLGLLPGSGGTQRLPRLIGVSTALEMILTGKQLRAKQ 178

Query: 70  AKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLD 129
           A K+G+VD +V                    + +  A +LA      +R  P + +++L 
Sbjct: 179 ALKLGLVDDVVP-----------------HSILLEAAVELAKKDRPSSRPLP-VRERILA 220

Query: 130 VALKFEFVRNQIFGKAKEKVMKMSGGLYPAPLKILDVVRTGIEKGPSAGYEAEAEGFSQL 189
             L     R Q+F    +K    + G YPA  +IL+VV TG+ +G S+GY+AEA  F +L
Sbjct: 221 GPLG----RAQLFKMVGKKTEHKTQGNYPATERILEVVETGLAQGTSSGYDAEARAFGEL 276

Query: 190 AMTPQSKGLMGLFRAQTECKKN-RLGKPQTPVKTVAVLGAGLMGAGIAHVTVDK-GYNTI 247
           AMTPQS+ L  +F A TE KK+     P  P+ +V +LG GLMG GIA+VT  K G    
Sbjct: 277 AMTPQSQALRSIFFASTEVKKDPGSDAPPAPLNSVGILGGGLMGGGIAYVTACKAGIPVR 336

Query: 248 VKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPFKNADMVIEAV 307
           +KD   +G+   L      L+G V+R+ + A +RD+ LA + GT  Y  F + D++IEAV
Sbjct: 337 IKDINPQGINHALKYSWDQLEGKVRRRHLKASERDKQLALISGTTDYRGFAHRDLIIEAV 396

Query: 308 FEDINIKHQVIKEIEAVVPPHCVVATNTSAIPITKIAAASKRPDKV 353
           FE++ +K Q++ E+E     H + A+NTS++PI  IAA + RP++V
Sbjct: 397 FENLELKQQMVAEVEQNCAAHTIFASNTSSLPIGDIAAHATRPEQV 442

Catalyzes the formation of an hydroxyacyl-CoA by addition of water on enoyl-CoA. Also exhibits 3-hydroxyacyl-CoA epimerase and 3-hydroxyacyl-CoA dehydrogenase activities.

Escherichia coli O157:H7 (taxid: 83334)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 5

>sp|Q8ZNA7|FADJ_SALTY Fatty acid oxidation complex subunit alpha OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=fadJ PE=3 SV=1

 Score =  224 bits (570), Expect = 9e-58,   Method: Compositional matrix adjust.
 Identities = 144/346 (41%), Positives = 206/346 (59%), Gaps = 24/346 (6%)

Query: 10  VALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADK 69
           +ALACH RI   D KT LGLPEV LGLLPG+GGTQRLP+L  +   LDM LTGK L+A +
Sbjct: 119 MALACHRRICTDDVKTVLGLPEVQLGLLPGSGGTQRLPRLVGVSTALDMILTGKQLRARQ 178

Query: 70  AKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLD 129
           A K G+VD +V                  + + +  A +LA  +    RT P + +++L 
Sbjct: 179 ALKAGLVDDVVP-----------------QTILLEAAVELAKKERLAQRTLP-VRERILA 220

Query: 130 VALKFEFVRNQIFGKAKEKVMKMSGGLYPAPLKILDVVRTGIEKGPSAGYEAEAEGFSQL 189
             L     R  +F   ++K  + + G YPA  +I+DV+ TG+ +G S+GY+AEA  F +L
Sbjct: 221 GPLG----RALLFRLVRKKTAQKTQGNYPATERIIDVIETGLAQGSSSGYDAEARAFGEL 276

Query: 190 AMTPQSKGLMGLFRAQTECKKN-RLGKPQTPVKTVAVLGAGLMGAGIAHVTVDKGYNTI- 247
           AMTPQS+ L  +F A TE KK+     P  P+ +V +LG GLMG GIA VT  KG   + 
Sbjct: 277 AMTPQSQALRAIFFASTEVKKDPGSDAPPGPLNSVGILGGGLMGGGIAWVTACKGGLPVR 336

Query: 248 VKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPFKNADMVIEAV 307
           +KD   +G+   L      L+  V+R+ + A +RD+ LA + G+  Y  F + D+VIEAV
Sbjct: 337 IKDINTQGINHALKYSWDLLETKVRRRHIKASERDKQLALISGSTDYRGFSHRDLVIEAV 396

Query: 308 FEDINIKHQVIKEIEAVVPPHCVVATNTSAIPITKIAAASKRPDKV 353
           FED+ +K Q++ E+E     H + A+NTS++PI  IAA + RP++V
Sbjct: 397 FEDLPLKQQMVAEVEQNCAAHTIFASNTSSLPIGDIAANAARPEQV 442

Catalyzes the formation of an hydroxyacyl-CoA by addition of water on enoyl-CoA. Also exhibits 3-hydroxyacyl-CoA epimerase and 3-hydroxyacyl-CoA dehydrogenase activities.

Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) (taxid: 99287)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 5

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	359
91083819	761	PREDICTED: similar to hydroxyacyl-coenzy	0.966	0.455	0.734	1e-149
270007934	697	hypothetical protein TcasGA2_TC014680 [T	0.966	0.497	0.734	1e-149
158297504	771	AGAP007784-PA [Anopheles gambiae str. PE	0.966	0.450	0.665	1e-137
332376637	761	unknown [Dendroctonus ponderosae]	0.961	0.453	0.713	1e-135
312384727	772	hypothetical protein AND_01710 [Anophele	0.966	0.449	0.659	1e-134
157140862	741	3-hydroxyacyl-coa dehyrogenase [Aedes ae	0.966	0.468	0.651	1e-134
157125238	770	3-hydroxyacyl-coa dehyrogenase [Aedes ae	0.966	0.450	0.651	1e-134
170073935	744	fatty acid oxidation complex subunit alp	0.966	0.466	0.651	1e-133
114052230	762	hydroxyacyl-coenzyme A dehydrogenase [Bo	0.963	0.454	0.690	1e-132
350404620	764	PREDICTED: trifunctional enzyme subunit	0.966	0.454	0.657	1e-132

>gi|91083819|ref|XP_973530.1| PREDICTED: similar to hydroxyacyl-coenzyme A dehydrogenase [Tribolium castaneum]

 Score =  534 bits (1376), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 255/347 (73%), Positives = 300/347 (86%)

Query: 10  VALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADK 69
           VAL+CHYRI VKDKKTGLGLPEVMLGLLPGAGGTQRLP+L+ +PN LDM+LTGKTLKAD+
Sbjct: 148 VALSCHYRIAVKDKKTGLGLPEVMLGLLPGAGGTQRLPRLSTVPNALDMSLTGKTLKADR 207

Query: 70  AKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLD 129
           AKKMGIVD LV+PLGPGL  PE  T +YLE VAV+ A QLASGKLK++R K  + D++L+
Sbjct: 208 AKKMGIVDLLVDPLGPGLGEPETVTRQYLESVAVDVAKQLASGKLKVDRKKSQLTDRLLE 267

Query: 130 VALKFEFVRNQIFGKAKEKVMKMSGGLYPAPLKILDVVRTGIEKGPSAGYEAEAEGFSQL 189
            AL++ +V++QIFGKAK +VMKMSGGLYPAPL+IL+V+RTGI+KGP AGYEAEA  F +L
Sbjct: 268 FALQYNWVKDQIFGKAKAQVMKMSGGLYPAPLRILEVIRTGIDKGPKAGYEAEARAFGEL 327

Query: 190 AMTPQSKGLMGLFRAQTECKKNRLGKPQTPVKTVAVLGAGLMGAGIAHVTVDKGYNTIVK 249
           AMTPQSKGLMGLFR QTECKKNR GKP   VKTVAVLGAGLMGAGIAHV+VDKGYN I+K
Sbjct: 328 AMTPQSKGLMGLFRGQTECKKNRFGKPSKEVKTVAVLGAGLMGAGIAHVSVDKGYNVILK 387

Query: 250 DSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPFKNADMVIEAVFE 309
           D+   GLARGLGQI+ GL  AVKRK+++ L+RDR+L++L  TL Y  FK AD+VIEAVFE
Sbjct: 388 DTNPVGLARGLGQIQNGLQNAVKRKRLTGLERDRFLSNLDATLDYKNFKKADIVIEAVFE 447

Query: 310 DINIKHQVIKEIEAVVPPHCVVATNTSAIPITKIAAASKRPDKVRNM 356
           D+NIKH+V+KE+EA++PP CV ATNTSAIPI+KIAAAS RPDKV  M
Sbjct: 448 DLNIKHKVVKEVEAIIPPECVFATNTSAIPISKIAAASSRPDKVIGM 494

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270007934|gb|EFA04382.1| hypothetical protein TcasGA2_TC014680 [Tribolium castaneum]

 Score =  533 bits (1373), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 255/347 (73%), Positives = 300/347 (86%)

Query: 10  VALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADK 69
           VAL+CHYRI VKDKKTGLGLPEVMLGLLPGAGGTQRLP+L+ +PN LDM+LTGKTLKAD+
Sbjct: 84  VALSCHYRIAVKDKKTGLGLPEVMLGLLPGAGGTQRLPRLSTVPNALDMSLTGKTLKADR 143

Query: 70  AKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLD 129
           AKKMGIVD LV+PLGPGL  PE  T +YLE VAV+ A QLASGKLK++R K  + D++L+
Sbjct: 144 AKKMGIVDLLVDPLGPGLGEPETVTRQYLESVAVDVAKQLASGKLKVDRKKSQLTDRLLE 203

Query: 130 VALKFEFVRNQIFGKAKEKVMKMSGGLYPAPLKILDVVRTGIEKGPSAGYEAEAEGFSQL 189
            AL++ +V++QIFGKAK +VMKMSGGLYPAPL+IL+V+RTGI+KGP AGYEAEA  F +L
Sbjct: 204 FALQYNWVKDQIFGKAKAQVMKMSGGLYPAPLRILEVIRTGIDKGPKAGYEAEARAFGEL 263

Query: 190 AMTPQSKGLMGLFRAQTECKKNRLGKPQTPVKTVAVLGAGLMGAGIAHVTVDKGYNTIVK 249
           AMTPQSKGLMGLFR QTECKKNR GKP   VKTVAVLGAGLMGAGIAHV+VDKGYN I+K
Sbjct: 264 AMTPQSKGLMGLFRGQTECKKNRFGKPSKEVKTVAVLGAGLMGAGIAHVSVDKGYNVILK 323

Query: 250 DSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPFKNADMVIEAVFE 309
           D+   GLARGLGQI+ GL  AVKRK+++ L+RDR+L++L  TL Y  FK AD+VIEAVFE
Sbjct: 324 DTNPVGLARGLGQIQNGLQNAVKRKRLTGLERDRFLSNLDATLDYKNFKKADIVIEAVFE 383

Query: 310 DINIKHQVIKEIEAVVPPHCVVATNTSAIPITKIAAASKRPDKVRNM 356
           D+NIKH+V+KE+EA++PP CV ATNTSAIPI+KIAAAS RPDKV  M
Sbjct: 384 DLNIKHKVVKEVEAIIPPECVFATNTSAIPISKIAAASSRPDKVIGM 430

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158297504|ref|XP_317731.4| AGAP007784-PA [Anopheles gambiae str. PEST] gi|157015227|gb|EAA12305.4| AGAP007784-PA [Anopheles gambiae str. PEST]

 Score =  494 bits (1271), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 231/347 (66%), Positives = 287/347 (82%)

Query: 10  VALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADK 69
           +ALACHYR+ +KDKKT +GLPEVMLGLLPGAGGTQRLPKLT++P  LD+ LTGK++KADK
Sbjct: 156 LALACHYRVALKDKKTVVGLPEVMLGLLPGAGGTQRLPKLTSIPTALDLALTGKSVKADK 215

Query: 70  AKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLD 129
           AKK+GIVD LV PLGPGL   ++ T+EYLE+VA+  A  LAS KLK+NR K  +  KV D
Sbjct: 216 AKKLGIVDMLVNPLGPGLKPADQNTLEYLEQVAIQVAKDLASEKLKVNRQKTGLVAKVTD 275

Query: 130 VALKFEFVRNQIFGKAKEKVMKMSGGLYPAPLKILDVVRTGIEKGPSAGYEAEAEGFSQL 189
            A   E+V+N++F KA+E+VMKMSGGLYPAPLKILDV+R G++KG  AGYEAE +GF +L
Sbjct: 276 FAFGIEWVKNKVFEKAREQVMKMSGGLYPAPLKILDVIRVGVDKGQEAGYEAERKGFGEL 335

Query: 190 AMTPQSKGLMGLFRAQTECKKNRLGKPQTPVKTVAVLGAGLMGAGIAHVTVDKGYNTIVK 249
           + TPQSKGL+GLFR QTECKKNR GKP  P KT+ VLGAGLMGAGI  V++DKGY  I+K
Sbjct: 336 SQTPQSKGLIGLFRGQTECKKNRFGKPANPPKTIGVLGAGLMGAGIVQVSIDKGYQVIMK 395

Query: 250 DSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPFKNADMVIEAVFE 309
           D+ E GL RG+GQ++ GL GA+KRK++SA++RD+ L++L  TLSY+PF+  D+VIEAVFE
Sbjct: 396 DTTEAGLGRGIGQVQNGLQGAIKRKRISAIERDQILSNLTSTLSYEPFRQTDIVIEAVFE 455

Query: 310 DINIKHQVIKEIEAVVPPHCVVATNTSAIPITKIAAASKRPDKVRNM 356
           +I+IKH+VIKE+E VVP HC++ATNTSAIPITKIAA S RP+ V  M
Sbjct: 456 NIDIKHRVIKELEQVVPKHCIIATNTSAIPITKIAAGSSRPENVVGM 502

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332376637|gb|AEE63458.1| unknown [Dendroctonus ponderosae]

 Score =  487 bits (1253), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 247/346 (71%), Positives = 292/346 (84%), Gaps = 1/346 (0%)

Query: 11  ALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKA 70
           ALACHYRI VKDKKTGLG PEVMLGLLPG GGTQRLPKL  +PN LD+ LTGKTLKADKA
Sbjct: 151 ALACHYRIAVKDKKTGLGCPEVMLGLLPGGGGTQRLPKLAGVPNSLDLCLTGKTLKADKA 210

Query: 71  KKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDV 130
           K  GIVD LV+PLGPGL+ PE  T +YLE +A++ A Q+ASGKL   + K +  +KVL++
Sbjct: 211 KTFGIVDLLVDPLGPGLDTPENCTRKYLETIAIDVAKQIASGKLSTEKKKGLT-EKVLNL 269

Query: 131 ALKFEFVRNQIFGKAKEKVMKMSGGLYPAPLKILDVVRTGIEKGPSAGYEAEAEGFSQLA 190
           AL+++FV++QIF KAK +VMKMSGGLYPAPLKILDV+RTGI+KG  AGYEAEA+GF +LA
Sbjct: 270 ALQYDFVKDQIFKKAKAQVMKMSGGLYPAPLKILDVIRTGIDKGQEAGYEAEAKGFGELA 329

Query: 191 MTPQSKGLMGLFRAQTECKKNRLGKPQTPVKTVAVLGAGLMGAGIAHVTVDKGYNTIVKD 250
           MTPQSKGL+ LF+ QT+CKKNR GKP    KTVAVLGAGLMGAGIAHVTVDKGY+ I+KD
Sbjct: 330 MTPQSKGLISLFQGQTQCKKNRFGKPSKEFKTVAVLGAGLMGAGIAHVTVDKGYDVILKD 389

Query: 251 SFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPFKNADMVIEAVFED 310
           +   GLARG+ QI TG++ AVKRK++S+LD+DRYLA+L  TL+YD FKNAD+VIEAVFED
Sbjct: 390 TNSNGLARGVNQISTGINNAVKRKRISSLDKDRYLANLNATLNYDSFKNADVVIEAVFED 449

Query: 311 INIKHQVIKEIEAVVPPHCVVATNTSAIPITKIAAASKRPDKVRNM 356
           ++IKH+V+KE+EAVV P CV ATNTSAIPI  IAAAS RPDKV  M
Sbjct: 450 LSIKHKVLKEVEAVVRPECVFATNTSAIPIRNIAAASSRPDKVIGM 495

Source: Dendroctonus ponderosae

Species: Dendroctonus ponderosae

Genus: Dendroctonus

Family: Curculionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|312384727|gb|EFR29384.1| hypothetical protein AND_01710 [Anopheles darlingi]

 Score =  485 bits (1249), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 229/347 (65%), Positives = 286/347 (82%)

Query: 10  VALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADK 69
           +ALAC YR+ +KDKKT +GLPEVMLGLLPGAGGTQRLPKLT++P  LD+ LTGK++KADK
Sbjct: 157 LALACQYRVALKDKKTVVGLPEVMLGLLPGAGGTQRLPKLTSIPTALDLALTGKSVKADK 216

Query: 70  AKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLD 129
           AKK+GIVD LV PLGPGL   E+ T+EYLE+VA+  A  LAS KLK++R K  + +KV +
Sbjct: 217 AKKLGIVDLLVNPLGPGLKPAEQNTLEYLEQVAIQVAKDLASEKLKVSRQKTGLVNKVTE 276

Query: 130 VALKFEFVRNQIFGKAKEKVMKMSGGLYPAPLKILDVVRTGIEKGPSAGYEAEAEGFSQL 189
            A   E+V+ ++F KA+E+VMK+SGGLYPAPLKILDV+R G++KG  AGYEAE +GF +L
Sbjct: 277 FAFGIEWVKEKVFAKAREQVMKLSGGLYPAPLKILDVIRVGVDKGQEAGYEAERKGFGEL 336

Query: 190 AMTPQSKGLMGLFRAQTECKKNRLGKPQTPVKTVAVLGAGLMGAGIAHVTVDKGYNTIVK 249
           + TPQSKGL+GLFR QTECKKNR G+P  P KTV VLGAGLMGAGI  V++DKGY  I+K
Sbjct: 337 SQTPQSKGLIGLFRGQTECKKNRFGRPANPPKTVGVLGAGLMGAGIVQVSIDKGYQVIMK 396

Query: 250 DSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPFKNADMVIEAVFE 309
           D+ E GL RG+GQI+ GL  A+KRK++SA++RD+ L++L  TLSY+PFKN D+VIEAVFE
Sbjct: 397 DTTEAGLGRGVGQIQGGLQNAIKRKRISAIERDQILSNLTSTLSYEPFKNTDIVIEAVFE 456

Query: 310 DINIKHQVIKEIEAVVPPHCVVATNTSAIPITKIAAASKRPDKVRNM 356
           +I+IKH+VIKE+E VVP HC++ATNTSAIPITKIAA S RP+ V  M
Sbjct: 457 NIDIKHRVIKELEQVVPKHCIIATNTSAIPITKIAAGSSRPENVVGM 503

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157140862|ref|XP_001647675.1| 3-hydroxyacyl-coa dehyrogenase [Aedes aegypti] gi|108867146|gb|EAT32343.1| AAEL015524-PA [Aedes aegypti]

 Score =  484 bits (1247), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 226/347 (65%), Positives = 284/347 (81%)

Query: 10  VALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADK 69
           +A+ACHYRI VKDKKT LGLPEVMLGLLPGAGGTQRLPKL+++P  LD+ LTGK +KADK
Sbjct: 126 LAMACHYRIAVKDKKTNLGLPEVMLGLLPGAGGTQRLPKLSSIPTALDLALTGKNVKADK 185

Query: 70  AKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLD 129
           AKK+GIVD LV PLGPGL   E+ T+EYLE+VA+ TA  LAS KLK+NR K  + + + D
Sbjct: 186 AKKLGIVDMLVTPLGPGLKSAEQNTIEYLEKVAIQTAKDLASDKLKVNRKKSGLVNAITD 245

Query: 130 VALKFEFVRNQIFGKAKEKVMKMSGGLYPAPLKILDVVRTGIEKGPSAGYEAEAEGFSQL 189
            A   ++V++++FGKA+E+VMK+SGGLYPAPLKI+DV+R G++KG  AG EAE +GF +L
Sbjct: 246 YAFSIDWVKDKVFGKAREQVMKLSGGLYPAPLKIIDVIRVGVDKGFEAGSEAERKGFGEL 305

Query: 190 AMTPQSKGLMGLFRAQTECKKNRLGKPQTPVKTVAVLGAGLMGAGIAHVTVDKGYNTIVK 249
           + TPQSKGL+GLFR QTECKKNR GKP  P K + VLGAGLMGAGI  V++DKGY  ++K
Sbjct: 306 SQTPQSKGLIGLFRGQTECKKNRFGKPANPPKNIGVLGAGLMGAGIVQVSIDKGYQVVMK 365

Query: 250 DSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPFKNADMVIEAVFE 309
           D+ E GL RG+GQ++ GL  AVKRK++S +++D+ L++L  TLSYD FKN D+VIEAVFE
Sbjct: 366 DTTEAGLGRGVGQVQNGLQNAVKRKRISGIEKDQILSNLNATLSYDAFKNTDIVIEAVFE 425

Query: 310 DINIKHQVIKEIEAVVPPHCVVATNTSAIPITKIAAASKRPDKVRNM 356
           +I+IKH+VIKE+E VVP HC++ATNTSAIPITKIAA S RP+ V  M
Sbjct: 426 NIDIKHKVIKELEQVVPKHCIIATNTSAIPITKIAAGSSRPENVVGM 472

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157125238|ref|XP_001654257.1| 3-hydroxyacyl-coa dehyrogenase [Aedes aegypti] gi|157125240|ref|XP_001654258.1| 3-hydroxyacyl-coa dehyrogenase [Aedes aegypti] gi|108873690|gb|EAT37915.1| AAEL010146-PA [Aedes aegypti] gi|108873691|gb|EAT37916.1| AAEL010146-PB [Aedes aegypti]

 Score =  484 bits (1245), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 226/347 (65%), Positives = 284/347 (81%)

Query: 10  VALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADK 69
           +A+ACHYRI VKDKKT LGLPEVMLGLLPGAGGTQRLPKL+++P  LD+ LTGK +KADK
Sbjct: 155 LAMACHYRIAVKDKKTNLGLPEVMLGLLPGAGGTQRLPKLSSIPTALDLALTGKNVKADK 214

Query: 70  AKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLD 129
           AKK+GIVD LV PLGPGL   E+ T+EYLE+VA+ TA  LAS KLK+NR K  + + + D
Sbjct: 215 AKKLGIVDLLVTPLGPGLKSAEQNTIEYLEKVAIQTAKDLASDKLKVNRKKSGLVNAITD 274

Query: 130 VALKFEFVRNQIFGKAKEKVMKMSGGLYPAPLKILDVVRTGIEKGPSAGYEAEAEGFSQL 189
            A   ++V++++FGKA+E+VMK+SGGLYPAPLKI+DV+R G++KG  AG EAE +GF +L
Sbjct: 275 YAFSIDWVKDKVFGKAREQVMKLSGGLYPAPLKIIDVIRVGVDKGFEAGSEAERKGFGEL 334

Query: 190 AMTPQSKGLMGLFRAQTECKKNRLGKPQTPVKTVAVLGAGLMGAGIAHVTVDKGYNTIVK 249
           + TPQSKGL+GLFR QTECKKNR GKP  P K + VLGAGLMGAGI  V++DKGY  ++K
Sbjct: 335 SQTPQSKGLIGLFRGQTECKKNRFGKPANPPKNIGVLGAGLMGAGIVQVSIDKGYQVVMK 394

Query: 250 DSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPFKNADMVIEAVFE 309
           D+ E GL RG+GQ++ GL  AVKRK++S +++D+ L++L  TLSYD FKN D+VIEAVFE
Sbjct: 395 DTTEAGLGRGVGQVQNGLQNAVKRKRISGIEKDQILSNLNATLSYDAFKNTDIVIEAVFE 454

Query: 310 DINIKHQVIKEIEAVVPPHCVVATNTSAIPITKIAAASKRPDKVRNM 356
           +I+IKH+VIKE+E VVP HC++ATNTSAIPITKIAA S RP+ V  M
Sbjct: 455 NIDIKHKVIKELEQVVPKHCIIATNTSAIPITKIAAGSSRPENVVGM 501

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170073935|ref|XP_001870475.1| fatty acid oxidation complex subunit alpha [Culex quinquefasciatus] gi|167870657|gb|EDS34040.1| fatty acid oxidation complex subunit alpha [Culex quinquefasciatus]

 Score =  481 bits (1239), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 226/347 (65%), Positives = 287/347 (82%)

Query: 10  VALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADK 69
           +ALAC YRI VK KKT LGLPEVMLGLLPGAGGTQRLPKL+++P  LD+ LTGK +KADK
Sbjct: 129 LALACQYRIAVKSKKTNLGLPEVMLGLLPGAGGTQRLPKLSSIPTALDLALTGKNVKADK 188

Query: 70  AKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLD 129
           AKK+GIVD LV PLGPGL + E+ T+EYLE+VA+  A  +AS KLK+NR K  + + V+D
Sbjct: 189 AKKLGIVDLLVNPLGPGLKNSEDSTIEYLEKVAIQAAKDIASDKLKVNRKKGGLVNGVMD 248

Query: 130 VALKFEFVRNQIFGKAKEKVMKMSGGLYPAPLKILDVVRTGIEKGPSAGYEAEAEGFSQL 189
            A   ++V++++FGKA+E+VMKMSGGLYPAPLKILDV+RTG++KG   G EAE +GF +L
Sbjct: 249 FAFSIDWVKDKVFGKAREQVMKMSGGLYPAPLKILDVIRTGVDKGFEVGSEAERKGFGEL 308

Query: 190 AMTPQSKGLMGLFRAQTECKKNRLGKPQTPVKTVAVLGAGLMGAGIAHVTVDKGYNTIVK 249
           + TPQSKGL+GLFR QTECKKNR GKP  P KT+ VLGAGLMGAGI  V++DKGY+ ++K
Sbjct: 309 SQTPQSKGLIGLFRGQTECKKNRFGKPANPPKTIGVLGAGLMGAGIVQVSIDKGYHVVMK 368

Query: 250 DSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPFKNADMVIEAVFE 309
           D+ E GL RG+GQ++TGL  A+KRK++SA++RD+ L++L  TL+YD F+N D+VIEAVFE
Sbjct: 369 DTTEAGLGRGIGQVQTGLQNAIKRKRISAIERDQILSNLNPTLNYDEFRNVDIVIEAVFE 428

Query: 310 DINIKHQVIKEIEAVVPPHCVVATNTSAIPITKIAAASKRPDKVRNM 356
           +++IKH+VIKE+E V+P H ++ATNTSAIPITKIAA S RPDKV  M
Sbjct: 429 NLDIKHKVIKELEQVIPKHAIIATNTSAIPITKIAAGSSRPDKVVGM 475

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|114052230|ref|NP_001040132.1| hydroxyacyl-coenzyme A dehydrogenase [Bombyx mori] gi|87248157|gb|ABD36131.1| hydroxyacyl-coenzyme A dehydrogenase [Bombyx mori]

 Score =  479 bits (1232), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 239/346 (69%), Positives = 286/346 (82%)

Query: 11  ALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKA 70
           ALAC YRI VKD KTG GLPEVMLGLLPG GGTQRLP LT++P  LD+ LTGKT+KADKA
Sbjct: 150 ALACKYRIAVKDSKTGFGLPEVMLGLLPGGGGTQRLPALTSIPTTLDLALTGKTVKADKA 209

Query: 71  KKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDV 130
           KK+GIVD LV PLGPGL  PEE T +YLE VA+  A  +A+GK+ ++R+K  +  K+  +
Sbjct: 210 KKLGIVDLLVSPLGPGLGQPEENTAKYLETVAIQIAKDIAAGKIIVDRSKKGLVQKITAI 269

Query: 131 ALKFEFVRNQIFGKAKEKVMKMSGGLYPAPLKILDVVRTGIEKGPSAGYEAEAEGFSQLA 190
            +++EFV+N IF KAKE+VMK S GLYPAPLKIL+VVRTG++KGP AGYEAEA+GF +LA
Sbjct: 270 VMQWEFVKNIIFKKAKEQVMKASRGLYPAPLKILEVVRTGVDKGPVAGYEAEAQGFGELA 329

Query: 191 MTPQSKGLMGLFRAQTECKKNRLGKPQTPVKTVAVLGAGLMGAGIAHVTVDKGYNTIVKD 250
           MTPQSKGL+GLFR QTECKKNR GK Q  VKT+ VLGAGLMGAGI  V++DKGYN ++KD
Sbjct: 330 MTPQSKGLIGLFRGQTECKKNRFGKSQVDVKTIGVLGAGLMGAGIVQVSIDKGYNVVMKD 389

Query: 251 SFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPFKNADMVIEAVFED 310
           +   GL RG+GQI+TGL  AVKRK++S+L +D+YL++L+ TL Y  FKNAD VIEAVFED
Sbjct: 390 ATNAGLYRGVGQIQTGLSNAVKRKRISSLQKDKYLSNLLPTLDYAKFKNADCVIEAVFED 449

Query: 311 INIKHQVIKEIEAVVPPHCVVATNTSAIPITKIAAASKRPDKVRNM 356
           INIKH+VIKE+EAVVP HC++ATNTSAIPITKIAA S RPDKV  M
Sbjct: 450 INIKHKVIKELEAVVPKHCIIATNTSAIPITKIAAGSSRPDKVIGM 495

Source: Bombyx mori

Species: Bombyx mori

Genus: Bombyx

Family: Bombycidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350404620|ref|XP_003487165.1| PREDICTED: trifunctional enzyme subunit alpha, mitochondrial-like [Bombus impatiens]

 Score =  477 bits (1228), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 228/347 (65%), Positives = 279/347 (80%)

Query: 10  VALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADK 69
           VA+ACHYR+ V D+KT LGLPEVMLGLLPGAGGTQRLP+LT+LPN LDMTLTGK LKA K
Sbjct: 153 VAMACHYRLAVNDQKTSLGLPEVMLGLLPGAGGTQRLPQLTSLPNALDMTLTGKNLKAIK 212

Query: 70  AKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLD 129
           AK++G+VD LV  LGPG+  PEE TM YLEE A+  A  LA+G LKI+R+   + DKV++
Sbjct: 213 AKQVGLVDILVNRLGPGIGTPEENTMRYLEETAIRAAKDLANGTLKIDRSSKTLMDKVMN 272

Query: 130 VALKFEFVRNQIFGKAKEKVMKMSGGLYPAPLKILDVVRTGIEKGPSAGYEAEAEGFSQL 189
            AL +EFV+NQ+F +AK +VMK +GGLYPAPLKILDV+RTG++KGP AGYEAEA+ F +L
Sbjct: 273 FALSYEFVKNQVFTRAKNEVMKKTGGLYPAPLKILDVIRTGMDKGPKAGYEAEAKAFGEL 332

Query: 190 AMTPQSKGLMGLFRAQTECKKNRLGKPQTPVKTVAVLGAGLMGAGIAHVTVDKGYNTIVK 249
           A+T Q +GL  LF  QT CKKNR G P+  VK +AV+GAGLMGAGI  V++DKG++ I+K
Sbjct: 333 AVTSQCRGLTSLFFGQTACKKNRFGAPKNAVKKIAVVGAGLMGAGIVQVSIDKGFDVIMK 392

Query: 250 DSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPFKNADMVIEAVFE 309
           D+ E GL RG  Q++ GLD AVKRKK S + +D+YL+ L  TL+Y+ FKNAD+VIEAVFE
Sbjct: 393 DTSEAGLYRGFNQVQKGLDTAVKRKKYSNVQKDKYLSQLDSTLAYNSFKNADIVIEAVFE 452

Query: 310 DINIKHQVIKEIEAVVPPHCVVATNTSAIPITKIAAASKRPDKVRNM 356
           DI IKH+VIKEIEA  P +CV+ATNTSAIPIT+IAA S RPDKV  M
Sbjct: 453 DIAIKHKVIKEIEANTPDYCVLATNTSAIPITEIAAGSSRPDKVIGM 499

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	359
FB|FBgn0028479	783	Mtpalpha "Mitochondrial trifun	0.966	0.443	0.625	1.9e-115
UNIPROTKB|F1PIP0	747	HADHA "Uncharacterized protein	0.963	0.463	0.559	3.8e-101
ZFIN|ZDB-GENE-041111-204	763	hadhab "hydroxyacyl-Coenzyme A	0.958	0.450	0.547	7.1e-100
UNIPROTKB|Q3SZ00	763	HADHA "HADHA protein" [Bos tau	0.963	0.453	0.553	1.5e-99
ZFIN|ZDB-GENE-031222-5	761	hadhaa "hydroxyacyl-Coenzyme A	0.961	0.453	0.563	1.5e-99
UNIPROTKB|Q29554	763	HADHA "Trifunctional enzyme su	0.963	0.453	0.553	5e-99
UNIPROTKB|F1NI29	697	HADHA "Uncharacterized protein	0.963	0.496	0.533	8.2e-99
UNIPROTKB|P40939	763	HADHA "Trifunctional enzyme su	0.963	0.453	0.544	2.8e-98
MGI|MGI:2135593	763	Hadha "hydroxyacyl-Coenzyme A	0.963	0.453	0.527	2.5e-97
RGD|620512	763	Hadha "hydroxyacyl-CoA dehydro	0.963	0.453	0.527	3.2e-97

FB|FBgn0028479 Mtpalpha "Mitochondrial trifunctional protein alpha subunit" [Drosophila melanogaster (taxid:7227)]

 Score = 1138 (405.7 bits), Expect = 1.9e-115, P = 1.9e-115
 Identities = 217/347 (62%), Positives = 270/347 (77%)

Query:    10 VALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADK 69
             +ALACHYRI  KD KT LGLPEVMLGLLPG GGT RLPKLT++P  LDM LTGK ++AD+
Sbjct:   163 LALACHYRIATKDSKTKLGLPEVMLGLLPGGGGTVRLPKLTSVPTALDMELTGKQVRADR 222

Query:    70 AKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLD 129
             AK++GIVD LV+PLGPGL   E+ T+EYLE+ AV  A+ LASGKL++NR K  +  K+  
Sbjct:   223 AKRLGIVDLLVDPLGPGLQPAEQNTIEYLEKTAVQVANDLASGKLRVNREKSGLVSKIQS 282

Query:   130 VALKFEFVRNQIFGKAKEKVMKMSGGLYPAPLKILDVVRTGIEKGPSAGYEAEAEGFSQL 189
               +  +FV+N+IF  A+++V+K S GLYPAPLKILDV+R G++KG  AGYEAE +GF +L
Sbjct:   283 FVMDTDFVKNKIFDTARKQVLKASNGLYPAPLKILDVIRAGVDKGTDAGYEAERKGFGEL 342

Query:   190 AMTPQSKGLMGLFRAQTECKKNRLGKPQTPVKTXXXXXXXXXXXXXXHVTVDKGYNTIVK 249
             + TP+SKGL+ LFR QTECKKNR GKP+ PVKT               V+VDKGY  ++K
Sbjct:   343 SATPESKGLIALFRGQTECKKNRFGKPERPVKTVGVLGAGLMGAGIVQVSVDKGYQVVMK 402

Query:   250 DSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPFKNADMVIEAVFE 309
             D+ E GLARG+GQ++ GL+ AVKRK++SAL+RD+ LASL  TL Y  FKNAD++IEAVFE
Sbjct:   403 DATEAGLARGIGQVQKGLETAVKRKRISALERDQTLASLRPTLDYSDFKNADIIIEAVFE 462

Query:   310 DINIKHQVIKEIEAVVPPHCVVATNTSAIPITKIAAASKRPDKVRNM 356
             DI +KH+VIKE+EAVVP HCV+ATNTSAIPITKIAA S RP+KV  M
Sbjct:   463 DIKVKHRVIKELEAVVPEHCVIATNTSAIPITKIAAGSSRPEKVVGM 509

GO:0016507 "mitochondrial fatty acid beta-oxidation multienzyme complex" evidence=ISS

GO:0016509 "long-chain-3-hydroxyacyl-CoA dehydrogenase activity" evidence=ISS

GO:0016508 "long-chain-enoyl-CoA hydratase activity" evidence=ISS

GO:0006635 "fatty acid beta-oxidation" evidence=ISS;IMP

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003857 "3-hydroxyacyl-CoA dehydrogenase activity" evidence=IEA

GO:0004300 "enoyl-CoA hydratase activity" evidence=IEA

GO:0050662 "coenzyme binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005811 "lipid particle" evidence=IDA

GO:0005875 "microtubule associated complex" evidence=IDA

GO:0042060 "wound healing" evidence=IMP

GO:0042594 "response to starvation" evidence=IMP

GO:0008340 "determination of adult lifespan" evidence=IMP

UNIPROTKB|F1PIP0 HADHA "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 1003 (358.1 bits), Expect = 3.8e-101, P = 3.8e-101
 Identities = 194/347 (55%), Positives = 252/347 (72%)

Query:    10 VALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADK 69
             +A++C YRI  KD+KT LG PEV+LG+LPGAGGTQRLPK+  LP   DM LTG+ ++AD+
Sbjct:   137 LAISCQYRIATKDRKTVLGAPEVLLGILPGAGGTQRLPKMVGLPAAFDMMLTGRNIRADR 196

Query:    70 AKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLD 129
             AK+MG+VDQLVEPLGPGL  PEERT+EYLEEVAVN A  L+  K+ I R K ++ +K+  
Sbjct:   197 AKRMGLVDQLVEPLGPGLKPPEERTIEYLEEVAVNFAKGLSDKKISIKRDKGLV-EKLTS 255

Query:   130 VALKFEFVRNQIFGKAKEKVMKMSGGLYPAPLKILDVVRTGIEKGPSAGYEAEAEGFSQL 189
              AL   FVR Q++ K +EKV K + GLYPAPLKI+DVV+TGIE+G  AGY +E++ F +L
Sbjct:   256 YALSIPFVRQQVYKKVEEKVRKQTKGLYPAPLKIIDVVKTGIEQGNDAGYLSESQKFGEL 315

Query:   190 AMTPQSKGLMGLFRAQTECKKNRLGKPQTPVKTXXXXXXXXXXXXXXHVTVDKGYNTIVK 249
             AMT +SK LMGL+  Q  CKKN+ G PQ  VK                V+VDKG  TI+K
Sbjct:   316 AMTKESKALMGLYHGQVLCKKNKFGAPQKEVKDLAILGAGLMGAGIAQVSVDKGLKTILK 375

Query:   250 DSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPFKNADMVIEAVFE 309
             D+   GL RG  Q+  GL+  VK+K +++ +RD   ++L G L Y  F+ ADMVIEAVFE
Sbjct:   376 DATLTGLGRGQQQVFKGLNDKVKKKALTSFERDSIFSNLTGQLDYQGFEKADMVIEAVFE 435

Query:   310 DINIKHQVIKEIEAVVPPHCVVATNTSAIPITKIAAASKRPDKVRNM 356
             D+++KH+V+KE+EAV+P HCV A+NTSA+PI +IAAASKRP+KV  M
Sbjct:   436 DLSLKHRVLKEVEAVIPGHCVFASNTSALPINEIAAASKRPEKVIGM 482

GO:0050662 "coenzyme binding" evidence=IEA

GO:0016507 "mitochondrial fatty acid beta-oxidation multienzyme complex" evidence=IEA

GO:0006635 "fatty acid beta-oxidation" evidence=IEA

GO:0004300 "enoyl-CoA hydratase activity" evidence=IEA

GO:0003857 "3-hydroxyacyl-CoA dehydrogenase activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

ZFIN|ZDB-GENE-041111-204 hadhab "hydroxyacyl-Coenzyme A dehydrogenase/3-ketoacyl-Coenzyme A thiolase/enoyl-Coenzyme A hydratase, alpha subunit b" [Danio rerio (taxid:7955)]

 Score = 991 (353.9 bits), Expect = 7.1e-100, P = 7.1e-100
 Identities = 189/345 (54%), Positives = 248/345 (71%)

Query:    12 LACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAK 71
             +AC YRI  K KKT LG PEVMLGLLPGAGGTQRLPK+  LP+  D+ LTG++++ADKAK
Sbjct:   154 IACQYRIATKSKKTVLGCPEVMLGLLPGAGGTQRLPKMLGLPSAFDVMLTGRSIRADKAK 213

Query:    72 KMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDVA 131
             KMG+V QLV+ LGPGL  PEERT+EYLEEVAV  A  LA  K+ + + K  +  K+ D  
Sbjct:   214 KMGLVHQLVDTLGPGLKSPEERTIEYLEEVAVEAARGLAQKKITLTKEKGWM-QKIQDYV 272

Query:   132 LKFEFVRNQIFGKAKEKVMKMSGGLYPAPLKILDVVRTGIEKGPSAGYEAEAEGFSQLAM 191
             + + FVR QI+   ++KVMK + GLYPAPLKI++ V+ G+E+GP+ GY  E++ F +LAM
Sbjct:   273 MSYPFVRQQIYNTVEKKVMKQTKGLYPAPLKIIESVKAGVEQGPTTGYLVESQQFGKLAM 332

Query:   192 TPQSKGLMGLFRAQTECKKNRLGKPQTPVKTXXXXXXXXXXXXXXHVTVDKGYNTIVKDS 251
             T +SK L+GL+  Q  CKKNR G P+  VKT               VTVDKG +TI+KD+
Sbjct:   333 TNESKALIGLYHGQVACKKNRFGTPEKEVKTLAILGAGLMGAGIAQVTVDKGIHTILKDT 392

Query:   252 FEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPFKNADMVIEAVFEDI 311
                GL+RG  Q+  GL+   K+K +++ +RD +L++L G L Y+ F  ADM+IEAVFED+
Sbjct:   393 TVDGLSRGEQQVFKGLNDKTKKKSLTSFERDTFLSNLTGQLDYNGFNKADMIIEAVFEDL 452

Query:   312 NIKHQVIKEIEAVVPPHCVVATNTSAIPITKIAAASKRPDKVRNM 356
             +IKH+V+KE+EAV+PPHC+ ATNTSA+PI  IAA SKRPDKV  M
Sbjct:   453 SIKHKVLKEVEAVIPPHCIFATNTSALPIKDIAAVSKRPDKVVGM 497

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0003857 "3-hydroxyacyl-CoA dehydrogenase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0004300 "enoyl-CoA hydratase activity" evidence=IEA

GO:0006631 "fatty acid metabolic process" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0016507 "mitochondrial fatty acid beta-oxidation multienzyme complex" evidence=IEA

GO:0050662 "coenzyme binding" evidence=IEA

GO:0006635 "fatty acid beta-oxidation" evidence=IEA

UNIPROTKB|Q3SZ00 HADHA "HADHA protein" [Bos taurus (taxid:9913)]

 Score = 988 (352.9 bits), Expect = 1.5e-99, P = 1.5e-99
 Identities = 192/347 (55%), Positives = 250/347 (72%)

Query:    10 VALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADK 69
             +A++C YRI  KDKKT LG PEV+LG+LPGAG TQRLPK+  +P   DM LTG+ ++AD+
Sbjct:   152 LAISCQYRIATKDKKTVLGSPEVLLGILPGAGATQRLPKMVGIPAAFDMMLTGRGIRADR 211

Query:    70 AKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLD 129
             AKKMG+VDQLVEPLGPG+  PEERT+EYLEEVA+  A  LA  K+   R K ++ +K+  
Sbjct:   212 AKKMGLVDQLVEPLGPGVKPPEERTIEYLEEVAITFAKGLADKKITPKRDKGLV-EKLTS 270

Query:   130 VALKFEFVRNQIFGKAKEKVMKMSGGLYPAPLKILDVVRTGIEKGPSAGYEAEAEGFSQL 189
              AL   FVR QI+ K +EKV K + GLYPAPLKI+DVV+TGIE+G +AGY +E++ F +L
Sbjct:   271 YALSIPFVRQQIYKKVEEKVRKQTKGLYPAPLKIIDVVKTGIEQGSNAGYLSESQTFGEL 330

Query:   190 AMTPQSKGLMGLFRAQTECKKNRLGKPQTPVKTXXXXXXXXXXXXXXHVTVDKGYNTIVK 249
             AMT +SK LMGL+R QT+CKKN+ G PQ  VK                V+VDKG  TI+K
Sbjct:   331 AMTKESKALMGLYRGQTQCKKNKFGAPQKEVKQLAVLGAGLMGAGIAQVSVDKGLQTILK 390

Query:   250 DSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPFKNADMVIEAVFE 309
             D+    L RG  Q+  GL+  VK+K +++ +RD   ++L+G L Y  F+ ADMVIEAVFE
Sbjct:   391 DTTLPALGRGQQQVFKGLNDKVKKKTLTSFERDAMFSNLIGQLDYRGFEKADMVIEAVFE 450

Query:   310 DINIKHQVIKEIEAVVPPHCVVATNTSAIPITKIAAASKRPDKVRNM 356
             D+N+KH+V+KE EAV+P HCV A+NTSA+PI +IA  SKRP+KV  M
Sbjct:   451 DLNLKHRVLKEAEAVIPDHCVFASNTSALPIGEIATVSKRPEKVIGM 497

GO:0042645 "mitochondrial nucleoid" evidence=IEA

GO:0032868 "response to insulin stimulus" evidence=IEA

GO:0016509 "long-chain-3-hydroxyacyl-CoA dehydrogenase activity" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0050662 "coenzyme binding" evidence=IEA

GO:0016507 "mitochondrial fatty acid beta-oxidation multienzyme complex" evidence=IEA

GO:0006635 "fatty acid beta-oxidation" evidence=IEA

GO:0004300 "enoyl-CoA hydratase activity" evidence=IEA

GO:0003857 "3-hydroxyacyl-CoA dehydrogenase activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

ZFIN|ZDB-GENE-031222-5 hadhaa "hydroxyacyl-Coenzyme A dehydrogenase/3-ketoacyl-Coenzyme A thiolase/enoyl-Coenzyme A hydratase, alpha subunit a" [Danio rerio (taxid:7955)]

 Score = 988 (352.9 bits), Expect = 1.5e-99, P = 1.5e-99
 Identities = 195/346 (56%), Positives = 245/346 (70%)

Query:    11 ALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKA 70
             A+AC YRI  K KKT LG PEVMLGLLPGAGGTQRLPK+  LP   DM LTG+ ++ADKA
Sbjct:   151 AIACQYRIATKSKKTVLGTPEVMLGLLPGAGGTQRLPKMVGLPAAFDMMLTGRNIRADKA 210

Query:    71 KKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDV 130
             KKMG+V QLV+PLGPGL  PEERT+EYLEEVAV+ A  LA+ K+ + + K ++  KV D 
Sbjct:   211 KKMGLVHQLVDPLGPGLKSPEERTIEYLEEVAVDFAKGLAAKKVTLEKKKGLM-QKVQDF 269

Query:   131 ALKFEFVRNQIFGKAKEKVMKMSGGLYPAPLKILDVVRTGIEKGPSAGYEAEAEGFSQLA 190
              +    VR QI+     KVMK S GLYPAPLKI++ ++TGIEKG +AGY AEA+ F QLA
Sbjct:   270 VMGLSLVRQQIYKTVHGKVMKQSKGLYPAPLKIIECIQTGIEKGNAAGYLAEAQNFGQLA 329

Query:   191 MTPQSKGLMGLFRAQTECKKNRLGKPQTPVKTXXXXXXXXXXXXXXHVTVDKGYNTIVKD 250
             M+ +S+ L+GL+  Q  CKKN  GKP+  VK                VT+DKG  TI+KD
Sbjct:   330 MSSESRALIGLYHGQVACKKNHFGKPEREVKNLAILGAGLMGAGIAQVTIDKGVATILKD 389

Query:   251 SFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPFKNADMVIEAVFED 310
             +  +GLARG  Q+  GL+   K+K ++  +RD  ++ L G L Y  F+ ADMVIEAVFED
Sbjct:   390 TTLEGLARGEQQVYKGLNDKTKKKSLTTFERDGIMSKLSGQLDYHGFEKADMVIEAVFED 449

Query:   311 INIKHQVIKEIEAVVPPHCVVATNTSAIPITKIAAASKRPDKVRNM 356
             + IKH+V+KE+EAV+PPHC+ ATNTSA+PI  IAAASKRP+KV  M
Sbjct:   450 LAIKHKVLKEVEAVIPPHCIFATNTSALPIKDIAAASKRPEKVIGM 495

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0003857 "3-hydroxyacyl-CoA dehydrogenase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0004300 "enoyl-CoA hydratase activity" evidence=IEA

GO:0006631 "fatty acid metabolic process" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0016507 "mitochondrial fatty acid beta-oxidation multienzyme complex" evidence=IEA

GO:0050662 "coenzyme binding" evidence=IEA

GO:0006635 "fatty acid beta-oxidation" evidence=IEA

GO:0009617 "response to bacterium" evidence=IDA

UNIPROTKB|Q29554 HADHA "Trifunctional enzyme subunit alpha, mitochondrial" [Sus scrofa (taxid:9823)]

 Score = 983 (351.1 bits), Expect = 5.0e-99, P = 5.0e-99
 Identities = 192/347 (55%), Positives = 250/347 (72%)

Query:    10 VALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADK 69
             +A++C YRI  KDKKT LG PEV+LG+LPGAGGTQRLPK+  +P   DM LTG+ ++ADK
Sbjct:   152 LAISCQYRIATKDKKTVLGAPEVLLGILPGAGGTQRLPKMVGVPAAFDMMLTGRGIRADK 211

Query:    70 AKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLD 129
             AKKMG+VDQLVEPLGPGL  PEERT+EYLEEVAV  A  LA  K+   R K ++ +K+  
Sbjct:   212 AKKMGLVDQLVEPLGPGLKPPEERTIEYLEEVAVTFAKGLADKKISPKRDKGLV-EKLTS 270

Query:   130 VALKFEFVRNQIFGKAKEKVMKMSGGLYPAPLKILDVVRTGIEKGPSAGYEAEAEGFSQL 189
              A+   FVR QI+ K +EKV K + GLYPAPLKI+DVV+TGIE+G  AGY +E++ F +L
Sbjct:   271 YAMSIPFVRQQIYKKVEEKVRKQTKGLYPAPLKIIDVVKTGIEQGSDAGYLSESQKFGEL 330

Query:   190 AMTPQSKGLMGLFRAQTECKKNRLGKPQTPVKTXXXXXXXXXXXXXXHVTVDKGYNTIVK 249
             AMT +SK LMGL+R QT CKKN+ G PQ  VK                V+VDK   TI+K
Sbjct:   331 AMTKESKALMGLYRGQTLCKKNKFGAPQKEVKHLAILGAGLMGAGIAQVSVDKHLKTILK 390

Query:   250 DSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPFKNADMVIEAVFE 309
             D+    L RG  Q+  GL+  V++K +++ +RD   ++L G L Y  F+ ADMVIEAVFE
Sbjct:   391 DASLPALGRGQQQVFKGLNDKVRKKALTSFERDSLFSNLTGQLDYQGFEKADMVIEAVFE 450

Query:   310 DINIKHQVIKEIEAVVPPHCVVATNTSAIPITKIAAASKRPDKVRNM 356
             ++++KH+V+KE+EAV+P HCV A+NTSA+PI++IAA SKRP+KV  M
Sbjct:   451 ELSLKHKVLKEVEAVIPDHCVFASNTSALPISEIAAVSKRPEKVIGM 497

GO:0006635 "fatty acid beta-oxidation" evidence=IEA

GO:0042645 "mitochondrial nucleoid" evidence=IEA

GO:0032868 "response to insulin stimulus" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0016509 "long-chain-3-hydroxyacyl-CoA dehydrogenase activity" evidence=IEA

GO:0004300 "enoyl-CoA hydratase activity" evidence=IEA

GO:0050662 "coenzyme binding" evidence=IEA

GO:0016507 "mitochondrial fatty acid beta-oxidation multienzyme complex" evidence=IEA

GO:0003857 "3-hydroxyacyl-CoA dehydrogenase activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|F1NI29 HADHA "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 981 (350.4 bits), Expect = 8.2e-99, P = 8.2e-99
 Identities = 185/347 (53%), Positives = 247/347 (71%)

Query:    10 VALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADK 69
             VA+ACHYRI  KD+KT LG PEV+LGLLPGAG TQRLPK+  LP   DM LTG+ + AD+
Sbjct:   159 VAIACHYRIATKDRKTILGTPEVLLGLLPGAGATQRLPKMVGLPAAFDMMLTGRNINADR 218

Query:    70 AKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLD 129
             AKKMG+VDQLV+PLGPG+  PE RT+EYLEEVA+  A  LA+  +   R+K ++  ++ D
Sbjct:   219 AKKMGLVDQLVDPLGPGVKPPEARTIEYLEEVAIGFARGLANKTVSAKRSKGLV-QRITD 277

Query:   130 VALKFEFVRNQIFGKAKEKVMKMSGGLYPAPLKILDVVRTGIEKGPSAGYEAEAEGFSQL 189
              A+   FVR Q++   + KV K + GLYPAPLKI++VV+ G+++G   GY  E++ F  L
Sbjct:   278 YAMALPFVRQQVYKTVENKVQKQTKGLYPAPLKIIEVVKAGLDQGHDTGYLTESQSFGHL 337

Query:   190 AMTPQSKGLMGLFRAQTECKKNRLGKPQTPVKTXXXXXXXXXXXXXXHVTVDKGYNTIVK 249
             AMT +SK L+GL+  Q  CKKN+ G PQ  VKT               V+VDKG  TI+K
Sbjct:   338 AMTNESKALIGLYHGQVRCKKNKFGTPQREVKTLAVLGAGLMGAGIAQVSVDKGLKTILK 397

Query:   250 DSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPFKNADMVIEAVFE 309
             D+ ++GL RG  Q+  GL+G VK+K +++ +RD  L+++   L Y  F+ ADMVIEAVFE
Sbjct:   398 DTMQQGLDRGQQQVFKGLNGKVKKKSLTSFERDSILSNMTAQLDYKGFEKADMVIEAVFE 457

Query:   310 DINIKHQVIKEIEAVVPPHCVVATNTSAIPITKIAAASKRPDKVRNM 356
             DINIKH+V+KE+EAV+PPHC+ A+NTSA+PI +IAA S+RP+KV  M
Sbjct:   458 DINIKHKVLKEVEAVIPPHCIFASNTSALPINQIAAVSQRPEKVIGM 504

GO:0003857 "3-hydroxyacyl-CoA dehydrogenase activity" evidence=IEA

GO:0004300 "enoyl-CoA hydratase activity" evidence=IEA

GO:0006635 "fatty acid beta-oxidation" evidence=IEA

GO:0016507 "mitochondrial fatty acid beta-oxidation multienzyme complex" evidence=IEA

GO:0050662 "coenzyme binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0016509 "long-chain-3-hydroxyacyl-CoA dehydrogenase activity" evidence=IEA

GO:0032868 "response to insulin stimulus" evidence=IEA

GO:0042645 "mitochondrial nucleoid" evidence=IEA

UNIPROTKB|P40939 HADHA "Trifunctional enzyme subunit alpha, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 976 (348.6 bits), Expect = 2.8e-98, P = 2.8e-98
 Identities = 189/347 (54%), Positives = 248/347 (71%)

Query:    10 VALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADK 69
             VA++C YRI  KD+KT LG PEV+LG LPGAGGTQRLPK+  +P  LDM LTG++++AD+
Sbjct:   152 VAISCQYRIATKDRKTVLGTPEVLLGALPGAGGTQRLPKMVGVPAALDMMLTGRSIRADR 211

Query:    70 AKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLD 129
             AKKMG+VDQLVEPLGPGL  PEERT+EYLEEVA+  A  LA  K+   R K ++ +K+  
Sbjct:   212 AKKMGLVDQLVEPLGPGLKPPEERTIEYLEEVAITFAKGLADKKISPKRDKGLV-EKLTA 270

Query:   130 VALKFEFVRNQIFGKAKEKVMKMSGGLYPAPLKILDVVRTGIEKGPSAGYEAEAEGFSQL 189
              A+   FVR Q++ K +EKV K + GLYPAPLKI+DVV+TGIE+G  AGY  E++ F +L
Sbjct:   271 YAMTIPFVRQQVYKKVEEKVRKQTKGLYPAPLKIIDVVKTGIEQGSDAGYLCESQKFGEL 330

Query:   190 AMTPQSKGLMGLFRAQTECKKNRLGKPQTPVKTXXXXXXXXXXXXXXHVTVDKGYNTIVK 249
              MT +SK LMGL+  Q  CKKN+ G PQ  VK                V+VDKG  TI+K
Sbjct:   331 VMTKESKALMGLYHGQVLCKKNKFGAPQKDVKHLAILGAGLMGAGIAQVSVDKGLKTILK 390

Query:   250 DSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPFKNADMVIEAVFE 309
             D+    L RG  Q+  GL+  VK+K +++ +RD   ++L G L Y  F+ ADMVIEAVFE
Sbjct:   391 DATLTALDRGQQQVFKGLNDKVKKKALTSFERDSIFSNLTGQLDYQGFEKADMVIEAVFE 450

Query:   310 DINIKHQVIKEIEAVVPPHCVVATNTSAIPITKIAAASKRPDKVRNM 356
             D+++KH+V+KE+EAV+P HC+ A+NTSA+PI++IAA SKRP+KV  M
Sbjct:   451 DLSLKHRVLKEVEAVIPDHCIFASNTSALPISEIAAVSKRPEKVIGM 497

GO:0004300 "enoyl-CoA hydratase activity" evidence=IEA

GO:0016509 "long-chain-3-hydroxyacyl-CoA dehydrogenase activity" evidence=IEA

GO:0000062 "fatty-acyl-CoA binding" evidence=IEA

GO:0003857 "3-hydroxyacyl-CoA dehydrogenase activity" evidence=IEA

GO:0016507 "mitochondrial fatty acid beta-oxidation multienzyme complex" evidence=IEA

GO:0016508 "long-chain-enoyl-CoA hydratase activity" evidence=IEA

GO:0032403 "protein complex binding" evidence=IEA

GO:0032868 "response to insulin stimulus" evidence=IEA

GO:0042493 "response to drug" evidence=IEA

GO:0051287 "NAD binding" evidence=IEA

GO:0006635 "fatty acid beta-oxidation" evidence=IEA;TAS

GO:0003985 "acetyl-CoA C-acetyltransferase activity" evidence=TAS

GO:0005743 "mitochondrial inner membrane" evidence=TAS

GO:0006644 "phospholipid metabolic process" evidence=TAS

GO:0035965 "cardiolipin acyl-chain remodeling" evidence=TAS

GO:0044255 "cellular lipid metabolic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0046474 "glycerophospholipid biosynthetic process" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0042645 "mitochondrial nucleoid" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

MGI|MGI:2135593 Hadha "hydroxyacyl-Coenzyme A dehydrogenase/3-ketoacyl-Coenzyme A thiolase/enoyl-Coenzyme A hydratase (trifunctional protein), alpha subunit" [Mus musculus (taxid:10090)]

 Score = 967 (345.5 bits), Expect = 2.5e-97, P = 2.5e-97
 Identities = 183/347 (52%), Positives = 248/347 (71%)

Query:    10 VALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADK 69
             +A+AC YRI  KD+KT LG+PEV+LG+LPGAGGTQRLPK+  +P   DM LTG+ ++AD+
Sbjct:   152 LAIACQYRIATKDRKTVLGVPEVLLGILPGAGGTQRLPKMVGVPAAFDMMLTGRNIRADR 211

Query:    70 AKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLD 129
             AKKMG+VDQLVEPLGPG+  PEERT+EYLEEVAVN A  LA  K+   ++K ++ +K+  
Sbjct:   212 AKKMGLVDQLVEPLGPGIKSPEERTIEYLEEVAVNFAKGLADRKVSAKQSKGLV-EKLTT 270

Query:   130 VALKFEFVRNQIFGKAKEKVMKMSGGLYPAPLKILDVVRTGIEKGPSAGYEAEAEGFSQL 189
              A+   FVR Q++   +EKV K + GLYPAPLKI+D V+ G+E+G  AGY AE++ F +L
Sbjct:   271 YAMTVPFVRQQVYKTVEEKVKKQTKGLYPAPLKIIDAVKAGLEQGSDAGYLAESQKFGEL 330

Query:   190 AMTPQSKGLMGLFRAQTECKKNRLGKPQTPVKTXXXXXXXXXXXXXXHVTVDKGYNTIVK 249
             A+T +SK LMGL+  Q  CKKN+ G PQ  V+                V+VDKG  T++K
Sbjct:   331 ALTKESKALMGLYNGQVLCKKNKFGAPQKNVQQLAILGAGLMGAGIAQVSVDKGLKTLLK 390

Query:   250 DSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPFKNADMVIEAVFE 309
             D+   GL RG  Q+  GL+  VK+K +++ +RD   ++L+G L Y  F+ ADMVIEAVFE
Sbjct:   391 DTTVTGLGRGQQQVFKGLNDKVKKKALTSFERDSIFSNLIGQLDYKGFEKADMVIEAVFE 450

Query:   310 DINIKHQVIKEIEAVVPPHCVVATNTSAIPITKIAAASKRPDKVRNM 356
             D+ +KH+V+KE+E+V P HC+ A+NTSA+PI +IAA SKRP+KV  M
Sbjct:   451 DLGVKHKVLKEVESVTPEHCIFASNTSALPINQIAAVSKRPEKVIGM 497

GO:0000062 "fatty-acyl-CoA binding" evidence=ISO

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0003857 "3-hydroxyacyl-CoA dehydrogenase activity" evidence=ISO

GO:0003988 "acetyl-CoA C-acyltransferase activity" evidence=ISO

GO:0004300 "enoyl-CoA hydratase activity" evidence=ISO;TAS

GO:0005739 "mitochondrion" evidence=ISO;IDA;TAS

GO:0005743 "mitochondrial inner membrane" evidence=IDA

GO:0006629 "lipid metabolic process" evidence=IEA

GO:0006631 "fatty acid metabolic process" evidence=IEA

GO:0006635 "fatty acid beta-oxidation" evidence=ISO;IMP

GO:0008152 "metabolic process" evidence=TAS

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016507 "mitochondrial fatty acid beta-oxidation multienzyme complex" evidence=ISO

GO:0016508 "long-chain-enoyl-CoA hydratase activity" evidence=ISO

GO:0016509 "long-chain-3-hydroxyacyl-CoA dehydrogenase activity" evidence=ISO;IDA

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0016829 "lyase activity" evidence=IEA

GO:0032403 "protein complex binding" evidence=ISO

GO:0032868 "response to insulin stimulus" evidence=IMP

GO:0042493 "response to drug" evidence=ISO

GO:0042645 "mitochondrial nucleoid" evidence=ISO

GO:0050662 "coenzyme binding" evidence=IEA

GO:0051287 "NAD binding" evidence=ISO

GO:0055114 "oxidation-reduction process" evidence=IDA

RGD|620512 Hadha "hydroxyacyl-CoA dehydrogenase/3-ketoacyl-CoA thiolase/enoyl-CoA hydratase (trifunctional protein), alpha subunit" [Rattus norvegicus (taxid:10116)]

 Score = 966 (345.1 bits), Expect = 3.2e-97, P = 3.2e-97
 Identities = 183/347 (52%), Positives = 249/347 (71%)

Query:    10 VALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADK 69
             +A+AC YRI  KD+KT LG+PEV+LG+LPGAGGTQRLPK+  +P   DM LTG+ ++AD+
Sbjct:   152 LAIACQYRIATKDRKTVLGVPEVLLGILPGAGGTQRLPKMVGVPAAFDMMLTGRNIRADR 211

Query:    70 AKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLD 129
             AKKMG+VDQLV+PLGPG+  PEERT+EYLEEVAVN A  LA  K+   ++K ++ +K+  
Sbjct:   212 AKKMGLVDQLVDPLGPGIKSPEERTIEYLEEVAVNFAKGLADRKVSAKQSKGLM-EKLTS 270

Query:   130 VALKFEFVRNQIFGKAKEKVMKMSGGLYPAPLKILDVVRTGIEKGPSAGYEAEAEGFSQL 189
              A+   FVR Q++   +EKV K + GLYPAPLKI+D V+TG+E+G  AGY AE+E F +L
Sbjct:   271 YAMTIPFVRQQVYKTVEEKVKKQTKGLYPAPLKIIDAVKTGLEQGNDAGYLAESEKFGEL 330

Query:   190 AMTPQSKGLMGLFRAQTECKKNRLGKPQTPVKTXXXXXXXXXXXXXXHVTVDKGYNTIVK 249
             A+T +SK LMGL+  Q  CKKN+ G PQ  V+                V+VDKG  T++K
Sbjct:   331 ALTKESKALMGLYNGQVLCKKNKFGAPQKTVQQLAILGAGLMGAGIAQVSVDKGLKTLLK 390

Query:   250 DSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPFKNADMVIEAVFE 309
             D+   GL RG  Q+  GL+  VK+K +++ +RD   ++L+G L Y  F+ ADMVIEAVFE
Sbjct:   391 DTTVTGLGRGQQQVFKGLNDKVKKKALTSFERDSIFSNLIGQLDYKGFEKADMVIEAVFE 450

Query:   310 DINIKHQVIKEIEAVVPPHCVVATNTSAIPITKIAAASKRPDKVRNM 356
             D+ +KH+V+KE+E+V P HC+ A+NTSA+PI +IAA S+RP+KV  M
Sbjct:   451 DLAVKHKVLKEVESVTPEHCIFASNTSALPINQIAAVSQRPEKVIGM 497

GO:0000062 "fatty-acyl-CoA binding" evidence=IDA

GO:0003857 "3-hydroxyacyl-CoA dehydrogenase activity" evidence=IMP;IDA

GO:0003988 "acetyl-CoA C-acyltransferase activity" evidence=IDA

GO:0004300 "enoyl-CoA hydratase activity" evidence=IMP;IDA

GO:0005730 "nucleolus" evidence=IEA;ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0005739 "mitochondrion" evidence=ISO;IDA;TAS

GO:0005743 "mitochondrial inner membrane" evidence=IEA;ISO

GO:0006635 "fatty acid beta-oxidation" evidence=IEA;ISO;IDA

GO:0016507 "mitochondrial fatty acid beta-oxidation multienzyme complex" evidence=IDA;TAS

GO:0016508 "long-chain-enoyl-CoA hydratase activity" evidence=IDA

GO:0016509 "long-chain-3-hydroxyacyl-CoA dehydrogenase activity" evidence=ISO;IDA

GO:0032403 "protein complex binding" evidence=IMP

GO:0032868 "response to insulin stimulus" evidence=IEA;ISO

GO:0042493 "response to drug" evidence=IDA

GO:0042645 "mitochondrial nucleoid" evidence=IEA;ISO

GO:0051287 "NAD binding" evidence=IDA

GO:0055114 "oxidation-reduction process" evidence=ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P40939	ECHA_HUMAN	1, ., 1, ., 1, ., 2, 1, 1	0.5792	0.9637	0.4534	yes	N/A
Q64428	ECHA_RAT	1, ., 1, ., 1, ., 2, 1, 1	0.5619	0.9637	0.4534	yes	N/A
Q8BMS1	ECHA_MOUSE	1, ., 1, ., 1, ., 2, 1, 1	0.5619	0.9637	0.4534	yes	N/A
Q29554	ECHA_PIG	1, ., 1, ., 1, ., 2, 1, 1	0.5878	0.9637	0.4534	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	1.1.1	LOW CONFIDENCE prediction!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	359
TIGR02441	737	TIGR02441, fa_ox_alpha_mit, fatty acid oxidation c	0.0
PRK11154	708	PRK11154, fadJ, multifunctional fatty acid oxidati	1e-117
TIGR02440	699	TIGR02440, FadJ, fatty oxidation complex, alpha su	2e-91
PRK11730	715	PRK11730, fadB, multifunctional fatty acid oxidati	2e-75
TIGR02437	714	TIGR02437, FadB, fatty oxidation complex, alpha su	7e-56
pfam02737	180	pfam02737, 3HCDH_N, 3-hydroxyacyl-CoA dehydrogenas	5e-49
COG1250	307	COG1250, FadB, 3-hydroxyacyl-CoA dehydrogenase [Li	1e-44
PRK05808	282	PRK05808, PRK05808, 3-hydroxybutyryl-CoA dehydroge	6e-40
PRK07530	292	PRK07530, PRK07530, 3-hydroxybutyryl-CoA dehydroge	6e-33
PRK07819	286	PRK07819, PRK07819, 3-hydroxybutyryl-CoA dehydroge	1e-30
PRK08268	507	PRK08268, PRK08268, 3-hydroxy-acyl-CoA dehydrogena	7e-30
PRK09260	288	PRK09260, PRK09260, 3-hydroxybutyryl-CoA dehydroge	1e-29
PLN02545	295	PLN02545, PLN02545, 3-hydroxybutyryl-CoA dehydroge	9e-26
pfam00378	245	pfam00378, ECH, Enoyl-CoA hydratase/isomerase fami	4e-24
TIGR02279	503	TIGR02279, PaaC-3OHAcCoADH, 3-hydroxyacyl-CoA dehy	2e-23
PRK06035	291	PRK06035, PRK06035, 3-hydroxyacyl-CoA dehydrogenas	2e-23
PRK06130	311	PRK06130, PRK06130, 3-hydroxybutyryl-CoA dehydroge	4e-22
COG1024	257	COG1024, CaiD, Enoyl-CoA hydratase/carnithine race	1e-19
cd06558	195	cd06558, crotonase-like, Crotonase/Enoyl-Coenzyme	2e-19
PRK08293	287	PRK08293, PRK08293, 3-hydroxybutyryl-CoA dehydroge	4e-18
PRK07657	260	PRK07657, PRK07657, enoyl-CoA hydratase; Provision	2e-15
PRK07658	257	PRK07658, PRK07658, enoyl-CoA hydratase; Provision	2e-14
PRK09674	255	PRK09674, PRK09674, enoyl-CoA hydratase-isomerase;	2e-12
PRK05809	260	PRK05809, PRK05809, 3-hydroxybutyryl-CoA dehydrata	1e-11
PRK08138	261	PRK08138, PRK08138, enoyl-CoA hydratase; Provision	1e-11
PRK09076	258	PRK09076, PRK09076, enoyl-CoA hydratase; Provision	3e-11
PLN02600	251	PLN02600, PLN02600, enoyl-CoA hydratase	3e-10
PRK05862	257	PRK05862, PRK05862, enoyl-CoA hydratase; Provision	1e-09
PRK08150	255	PRK08150, PRK08150, enoyl-CoA hydratase; Provision	1e-09
PRK03580	261	PRK03580, PRK03580, carnitinyl-CoA dehydratase; Pr	4e-09
PRK06129	308	PRK06129, PRK06129, 3-hydroxyacyl-CoA dehydrogenas	4e-09
PRK06494	259	PRK06494, PRK06494, enoyl-CoA hydratase; Provision	6e-09
PRK08252	254	PRK08252, PRK08252, enoyl-CoA hydratase; Provision	6e-09
PRK06688	259	PRK06688, PRK06688, enoyl-CoA hydratase; Provision	5e-08
PRK08788	287	PRK08788, PRK08788, enoyl-CoA hydratase; Validated	9e-08
PRK08269	314	PRK08269, PRK08269, 3-hydroxybutyryl-CoA dehydroge	2e-07
PRK05980	260	PRK05980, PRK05980, enoyl-CoA hydratase; Provision	3e-07
PRK07509	262	PRK07509, PRK07509, enoyl-CoA hydratase; Provision	8e-07
PRK06210	272	PRK06210, PRK06210, enoyl-CoA hydratase; Provision	7e-06
PRK08259	254	PRK08259, PRK08259, enoyl-CoA hydratase; Provision	2e-05
PRK09245	266	PRK09245, PRK09245, enoyl-CoA hydratase; Provision	4e-05
PRK05869	222	PRK05869, PRK05869, enoyl-CoA hydratase; Validated	5e-05
PRK06127	269	PRK06127, PRK06127, enoyl-CoA hydratase; Provision	5e-05
PRK07531	495	PRK07531, PRK07531, bifunctional 3-hydroxyacyl-CoA	9e-05
PRK07799	263	PRK07799, PRK07799, enoyl-CoA hydratase; Provision	2e-04
PRK06563	255	PRK06563, PRK06563, enoyl-CoA hydratase; Provision	2e-04
TIGR03222	546	TIGR03222, benzo_boxC, benzoyl-CoA-dihydrodiol lya	4e-04
TIGR02280	256	TIGR02280, PaaB1, phenylacetate degradation probab	4e-04
PRK08184	550	PRK08184, PRK08184, benzoyl-CoA-dihydrodiol lyase;	4e-04
PLN02664	275	PLN02664, PLN02664, enoyl-CoA hydratase/delta3,5-d	5e-04
PRK06190	258	PRK06190, PRK06190, enoyl-CoA hydratase; Provision	5e-04
PRK08140	262	PRK08140, PRK08140, enoyl-CoA hydratase; Provision	0.001
PRK06143	256	PRK06143, PRK06143, enoyl-CoA hydratase; Provision	0.002

>gnl|CDD|131494 TIGR02441, fa_ox_alpha_mit, fatty acid oxidation complex, alpha subunit, mitochondrial

 Score =  524 bits (1352), Expect = 0.0
 Identities = 227/347 (65%), Positives = 278/347 (80%), Gaps = 1/347 (0%)

Query: 10  VALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADK 69
           +ALACHYRI  KD+KT LGLPEVMLGLLPGAGGTQRLPKLT +P  LDM LTGK ++AD+
Sbjct: 126 LALACHYRIATKDRKTLLGLPEVMLGLLPGAGGTQRLPKLTGVPAALDMMLTGKKIRADR 185

Query: 70  AKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLD 129
           AKKMGIVDQLV+PLGPGL   EE T+EYLEEVAV  A  LA+GKL INR K ++  K+  
Sbjct: 186 AKKMGIVDQLVDPLGPGLKPAEENTIEYLEEVAVKFAQGLANGKLSINRDKGLV-HKITQ 244

Query: 130 VALKFEFVRNQIFGKAKEKVMKMSGGLYPAPLKILDVVRTGIEKGPSAGYEAEAEGFSQL 189
             +   FVR Q++  A++KVMK + GLYPAPLKILDVVRTG ++GP AGYEAE++ F +L
Sbjct: 245 YVMTNPFVRQQVYKTAEDKVMKQTKGLYPAPLKILDVVRTGYDQGPDAGYEAESKAFGEL 304

Query: 190 AMTPQSKGLMGLFRAQTECKKNRLGKPQTPVKTVAVLGAGLMGAGIAHVTVDKGYNTIVK 249
           +MT +SK L+GLF  QT+CKKN+ GKPQ PVKT+AVLGAGLMGAGIA V+VDKG  T++K
Sbjct: 305 SMTFESKALIGLFHGQTDCKKNKFGKPQRPVKTLAVLGAGLMGAGIAQVSVDKGLKTVLK 364

Query: 250 DSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPFKNADMVIEAVFE 309
           D+   GL RG  Q+  GL+  VKRKK+++L+RD  L++L  TL Y  FKNADMVIEAVFE
Sbjct: 365 DATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPTLDYSGFKNADMVIEAVFE 424

Query: 310 DINIKHQVIKEIEAVVPPHCVVATNTSAIPITKIAAASKRPDKVRNM 356
           D+++KH+VIKE+EAVVPPHC++A+NTSA+PI  IAA S RP+KV  M
Sbjct: 425 DLSLKHKVIKEVEAVVPPHCIIASNTSALPIKDIAAVSSRPEKVIGM 471

Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human , pig , and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16). Length = 737

>gnl|CDD|236864 PRK11154, fadJ, multifunctional fatty acid oxidation complex subunit alpha; Reviewed

 Score =  354 bits (911), Expect = e-117
 Identities = 160/346 (46%), Positives = 212/346 (61%), Gaps = 23/346 (6%)

Query: 10  VALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADK 69
           +ALACHYR+   D KT LGLPEV LGLLPG+GGTQRLP+L  +   LDM LTGK L+A +
Sbjct: 119 LALACHYRVCTDDPKTVLGLPEVQLGLLPGSGGTQRLPRLIGVSTALDMILTGKQLRAKQ 178

Query: 70  AKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLD 129
           A K+G+VD +V         P       L EVAV  A      K K  R    + +++L+
Sbjct: 179 ALKLGLVDDVV---------PHS----ILLEVAVELAK-----KGKPARRPLPVRERLLE 220

Query: 130 VALKFEFVRNQIFGKAKEKVMKMSGGLYPAPLKILDVVRTGIEKGPSAGYEAEAEGFSQL 189
                   R  +F +A++K +  + G YPAP +ILDVVRTG+EKG S+GYEAEA  F +L
Sbjct: 221 ---GNPLGRALLFKQARKKTLAKTQGNYPAPERILDVVRTGLEKGMSSGYEAEARAFGEL 277

Query: 190 AMTPQSKGLMGLFRAQTECKK-NRLGKPQTPVKTVAVLGAGLMGAGIAHVTVDK-GYNTI 247
           AMTP+S  L  +F A TE KK         PV  V VLG GLMG GIA+VT  K G    
Sbjct: 278 AMTPESAALRSIFFATTEMKKDTGSDAKPRPVNKVGVLGGGLMGGGIAYVTATKAGLPVR 337

Query: 248 VKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPFKNADMVIEAV 307
           +KD   +G+   L      LD  VKR+ +   +RD+ +A + GT  Y  FK+AD+VIEAV
Sbjct: 338 IKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGTTDYRGFKHADVVIEAV 397

Query: 308 FEDINIKHQVIKEIEAVVPPHCVVATNTSAIPITKIAAASKRPDKV 353
           FED+ +K Q++ E+E    PH + A+NTS++PI +IAAA+ RP++V
Sbjct: 398 FEDLALKQQMVAEVEQNCAPHTIFASNTSSLPIGQIAAAAARPEQV 443

Length = 708

>gnl|CDD|131493 TIGR02440, FadJ, fatty oxidation complex, alpha subunit FadJ

 Score =  288 bits (738), Expect = 2e-91
 Identities = 149/347 (42%), Positives = 202/347 (58%), Gaps = 25/347 (7%)

Query: 10  VALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADK 69
           +ALACH R+   D KT LGLPEV LGLLPG+GGTQRLP+L  +   LDM LTGK L+A +
Sbjct: 114 LALACHSRVCSDDDKTVLGLPEVQLGLLPGSGGTQRLPRLIGVSTALDMILTGKQLRAKQ 173

Query: 70  AKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLD 129
           A K+G+VD +V P                  + ++TA ++A     I +   +    +  
Sbjct: 174 ALKLGLVDDVV-PQ----------------SILLDTAVEMALKGKPIRKPLSLQERLLEG 216

Query: 130 VALKFEFVRNQIFGKAKEKVMKMSGGLYPAPLKILDVVRTGIEKGPSAGYEAEAEGFSQL 189
             L     R  +F +A +K  K + G YPA  +ILDVVR G+ +G   G +AEA  F +L
Sbjct: 217 TPLG----RALLFDQAAKKTAKKTQGNYPAAERILDVVRQGLAQGMQKGLDAEARAFGEL 272

Query: 190 AMTPQSKGLMGLFRAQTECKKNRLGKPQTP--VKTVAVLGAGLMGAGIAHVTVDK-GYNT 246
            MTP+S  L  +F A TE KK   G   TP  +K V +LG GLMG GIA VT  K G   
Sbjct: 273 VMTPESAALRSIFFATTEMKKET-GSDATPAKIKKVGILGGGLMGGGIASVTATKAGIPV 331

Query: 247 IVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPFKNADMVIEA 306
            +KD   +G+   L      LD  VKR+ M+  +RD  +A + GT  Y  FK+ D+VIEA
Sbjct: 332 RIKDINPQGINNALKYAWKLLDKGVKRRHMTPAERDNQMALITGTTDYRGFKDVDIVIEA 391

Query: 307 VFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPITKIAAASKRPDKV 353
           VFED+ +KHQ++K+IE     H + A+NTS++PI +IAAA+ RP+ V
Sbjct: 392 VFEDLALKHQMVKDIEQECAAHTIFASNTSSLPIGQIAAAASRPENV 438

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog model [Fatty acid and phospholipid metabolism, Degradation]. Length = 699

>gnl|CDD|183293 PRK11730, fadB, multifunctional fatty acid oxidation complex subunit alpha; Reviewed

 Score =  245 bits (629), Expect = 2e-75
 Identities = 123/349 (35%), Positives = 176/349 (50%), Gaps = 35/349 (10%)

Query: 11  ALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKA 70
            LA  YR+        +GLPE  LG++PG GGT RLP+L    N L+    GK ++A+ A
Sbjct: 121 VLATDYRVA--SPDARIGLPETKLGIMPGFGGTVRLPRLIGADNALEWIAAGKDVRAEDA 178

Query: 71  KKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKL--KINRTKPMIPDKVL 128
            K+G VD +V P             E L+E A+    Q  +GKL  K  R   + P    
Sbjct: 179 LKVGAVDAVVAP-------------EKLQEAALALLKQAIAGKLDWKARRQPKLEP---- 221

Query: 129 DVALKFEFVRNQI-----FGKAKEKVMKMSGGLYPAPLKILDVVRTGIEKGPSAGYEAEA 183
              LK     ++I     F  AK  V + +G  YPAP+  +  +      G     E EA
Sbjct: 222 ---LKL----SKIEAMMSFTTAKGMVAQKAGKHYPAPMTAVKTIEAAAGLGRDEALELEA 274

Query: 184 EGFSQLAMTPQSKGLMGLFRAQTECKK--NRLGKPQTPVKTVAVLGAGLMGAGIAHVTVD 241
           +GF +LA T  ++ L+G+F      K    +L K   PVK  AVLGAG+MG GIA+ +  
Sbjct: 275 KGFVKLAKTNVARALVGIFLNDQYVKGKAKKLAKDAKPVKQAAVLGAGIMGGGIAYQSAS 334

Query: 242 KGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPFKNAD 301
           KG   I+KD  +K L  G+ +    L+  V+R K+        L+S+  TL Y  F+  D
Sbjct: 335 KGVPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPTLDYAGFERVD 394

Query: 302 MVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPITKIAAASKRP 350
           +V+EAV E+  +K  V+ E+E  V    ++A+NTS I I+ +A A KRP
Sbjct: 395 VVVEAVVENPKVKAAVLAEVEQKVREDTILASNTSTISISLLAKALKRP 443

Length = 715

>gnl|CDD|131490 TIGR02437, FadB, fatty oxidation complex, alpha subunit FadB

 Score =  193 bits (493), Expect = 7e-56
 Identities = 115/351 (32%), Positives = 171/351 (48%), Gaps = 29/351 (8%)

Query: 12  LACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAK 71
           LA  +RI   D    +GLPE  LG++PG GGT RLP++    N L+   +GK  +A+ A 
Sbjct: 122 LATDFRIA--DDTAKIGLPETKLGIMPGFGGTVRLPRVIGADNALEWIASGKENRAEDAL 179

Query: 72  KMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKL--KINRTKPMIPDKV-- 127
           K+G VD +V               + L   A+       +GKL  K  R   + P K+  
Sbjct: 180 KVGAVDAVVTA-------------DKLGAAALQLLKDAINGKLDWKAKRQPKLEPLKLSK 226

Query: 128 LDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAPLKILDVVRTGIEKGPSAGYEAEAEGFS 187
           ++  + F   +  +   A        G  YPAP+  +  +      G     E EA+GF 
Sbjct: 227 IEAMMSFTTAKGMVAQVA--------GPHYPAPMTAVKTIEKAARFGRDKALEIEAKGFV 278

Query: 188 QLAMTPQSKGLMGLFRAQTECKK--NRLGKPQTPVKTVAVLGAGLMGAGIAHVTVDKGYN 245
           +LA T ++K L+GLF      K    +  K    VK  AVLGAG+MG GIA+ +  KG  
Sbjct: 279 KLAKTSEAKALIGLFLNDQYVKGKAKKADKIAKDVKQAAVLGAGIMGGGIAYQSASKGTP 338

Query: 246 TIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPFKNADMVIE 305
            ++KD  +  L  GL +    L+  V+R +++       L  +  TLSY  F N D+V+E
Sbjct: 339 IVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPTLSYAGFDNVDIVVE 398

Query: 306 AVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPITKIAAASKRPDKVRNM 356
           AV E+  +K  V+ E+E  V    ++A+NTS I I+ +A A KRP+    M
Sbjct: 399 AVVENPKVKAAVLAEVEQHVREDAILASNTSTISISLLAKALKRPENFCGM 449

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399 [Fatty acid and phospholipid metabolism, Degradation]. Length = 714

>gnl|CDD|202367 pfam02737, 3HCDH_N, 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain

 Score =  162 bits (413), Expect = 5e-49
 Identities = 50/132 (37%), Positives = 84/132 (63%)

Query: 222 TVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDR 281
            VAV+GAG MGAGIA V    G   ++ D  E+ L +   +I+  L   V++ +++  D 
Sbjct: 1   KVAVIGAGTMGAGIAQVFARAGLEVVLVDISEEALEKARARIEKSLARLVEKGRITEEDA 60

Query: 282 DRYLASLVGTLSYDPFKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPIT 341
           D  LA +  T       +AD+VIEAV E++++K ++  E++A+ PP  ++A+NTS++ IT
Sbjct: 61  DAVLARISFTTDLADAVDADLVIEAVPENLDLKRELFAELDAIAPPDAILASNTSSLSIT 120

Query: 342 KIAAASKRPDKV 353
           ++AAA+KRP++ 
Sbjct: 121 ELAAATKRPERF 132

This family also includes lambda crystallin. Length = 180

>gnl|CDD|224170 COG1250, FadB, 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]

 Score =  155 bits (393), Expect = 1e-44
 Identities = 57/136 (41%), Positives = 87/136 (63%)

Query: 218 TPVKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMS 277
             +K VAV+GAG+MGAGIA V    GY+ ++KD   + L R L  I+  L+  V++ K++
Sbjct: 1   MEIKKVAVIGAGVMGAGIAAVFALAGYDVVLKDISPEALERALAYIEKNLEKLVEKGKLT 60

Query: 278 ALDRDRYLASLVGTLSYDPFKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSA 337
             + D  LA +  T      K+AD+VIEAV ED+ +K QV  E+EA+  P  ++A+NTS+
Sbjct: 61  EEEADAALARITPTTDLAALKDADLVIEAVVEDLELKKQVFAELEALAKPDAILASNTSS 120

Query: 338 IPITKIAAASKRPDKV 353
           + IT++A A KRP++ 
Sbjct: 121 LSITELAEALKRPERF 136

Length = 307

>gnl|CDD|180269 PRK05808, PRK05808, 3-hydroxybutyryl-CoA dehydrogenase; Validated

 Score =  142 bits (359), Expect = 6e-40
 Identities = 56/137 (40%), Positives = 89/137 (64%)

Query: 220 VKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSAL 279
           ++ + V+GAG MG GIA V    GY+ ++ D  +  + RGL  I   LD  VK+ KM+  
Sbjct: 3   IQKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEA 62

Query: 280 DRDRYLASLVGTLSYDPFKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIP 339
           D++  LA + GT   D  K+AD+VIEA  E++++K ++  +++ +  P  ++ATNTS++ 
Sbjct: 63  DKEAALARITGTTDLDDLKDADLVIEAATENMDLKKKIFAQLDEIAKPEAILATNTSSLS 122

Query: 340 ITKIAAASKRPDKVRNM 356
           IT++AAA+KRPDKV  M
Sbjct: 123 ITELAAATKRPDKVIGM 139

Length = 282

>gnl|CDD|181018 PRK07530, PRK07530, 3-hydroxybutyryl-CoA dehydrogenase; Validated

 Score =  123 bits (312), Expect = 6e-33
 Identities = 49/135 (36%), Positives = 75/135 (55%)

Query: 218 TPVKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMS 277
             +K V V+GAG MG GIAHV    GY+ ++ D     L  GL  I   L   V + K+S
Sbjct: 2   MAIKKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSADRLEAGLATINGNLARQVAKGKIS 61

Query: 278 ALDRDRYLASLVGTLSYDPFKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSA 337
              R   LA +      +   + D+VIEA  ED  +K ++  ++  V+ P  ++ATNTS+
Sbjct: 62  EEARAAALARISTATDLEDLADCDLVIEAATEDETVKRKIFAQLCPVLKPEAILATNTSS 121

Query: 338 IPITKIAAASKRPDK 352
           I IT++A+A+ RP++
Sbjct: 122 ISITRLASATDRPER 136

Length = 292

>gnl|CDD|181133 PRK07819, PRK07819, 3-hydroxybutyryl-CoA dehydrogenase; Validated

 Score =  117 bits (296), Expect = 1e-30
 Identities = 57/137 (41%), Positives = 84/137 (61%), Gaps = 1/137 (0%)

Query: 218 TPVKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMS 277
             ++ V V+GAG MGAGIA V    G + +V ++ E+    G  +I+  L+ AV R K++
Sbjct: 3   DAIQRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEELATAGRNRIEKSLERAVSRGKLT 62

Query: 278 ALDRDRYLASLVGTLSYDPFKNADMVIEAVFEDINIKHQVIKEIEAVVP-PHCVVATNTS 336
             +RD  LA L  T     F +  +VIEAV ED  +K ++  E++ VV  P  V+A+NTS
Sbjct: 63  ERERDAALARLRFTTDLGDFADRQLVIEAVVEDEAVKTEIFAELDKVVTDPDAVLASNTS 122

Query: 337 AIPITKIAAASKRPDKV 353
           +IPI K+AAA+KRP +V
Sbjct: 123 SIPIMKLAAATKRPGRV 139

Length = 286

>gnl|CDD|236211 PRK08268, PRK08268, 3-hydroxy-acyl-CoA dehydrogenase; Validated

 Score =  119 bits (300), Expect = 7e-30
 Identities = 51/139 (36%), Positives = 79/139 (56%)

Query: 215 KPQTPVKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRK 274
                + TVAV+GAG MGAGIA V    G+  ++ D+     A     I   L   V++ 
Sbjct: 2   MALPSIATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAGAAAAARDGIAARLAKLVEKG 61

Query: 275 KMSALDRDRYLASLVGTLSYDPFKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATN 334
           K++A   D  LA L    +     + D+V+EA+ E +++K  +  ++EA+V P C++ATN
Sbjct: 62  KLTAEQADAALARLRPVEALADLADCDLVVEAIVERLDVKQALFAQLEAIVSPDCILATN 121

Query: 335 TSAIPITKIAAASKRPDKV 353
           TS++ IT IAAA K P++V
Sbjct: 122 TSSLSITAIAAALKHPERV 140

Length = 507

>gnl|CDD|236434 PRK09260, PRK09260, 3-hydroxybutyryl-CoA dehydrogenase; Validated

 Score =  115 bits (289), Expect = 1e-29
 Identities = 49/138 (35%), Positives = 78/138 (56%), Gaps = 1/138 (0%)

Query: 220 VKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSAL 279
           ++ + V+GAG+MG GIA+V    G+ T + D  ++ L     +I +  +  V R K++  
Sbjct: 1   IEKLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEA 60

Query: 280 DRDRYLASLVGTLSYDP-FKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAI 338
            R   LA L  +L       +AD+VIEAV E + +K  V +  +A  P  C +ATNTS +
Sbjct: 61  ARQAALARLSYSLDLKAAVADADLVIEAVPEKLELKKAVFETADAHAPAECYIATNTSTM 120

Query: 339 PITKIAAASKRPDKVRNM 356
             T+IA+ +KRP++V  M
Sbjct: 121 SPTEIASFTKRPERVIAM 138

Length = 288

>gnl|CDD|215300 PLN02545, PLN02545, 3-hydroxybutyryl-CoA dehydrogenase

 Score =  104 bits (261), Expect = 9e-26
 Identities = 50/137 (36%), Positives = 84/137 (61%)

Query: 220 VKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSAL 279
           +K V V+GAG MG+GIA +    G +  + DS    L+RGL  I + L   VK+ KMS  
Sbjct: 4   IKKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQE 63

Query: 280 DRDRYLASLVGTLSYDPFKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIP 339
           + D  L  +  T + +  ++AD +IEA+ E  ++K ++  E++ +  P  ++A+NTS+I 
Sbjct: 64  EADATLGRIRCTTNLEELRDADFIIEAIVESEDLKKKLFSELDRICKPSAILASNTSSIS 123

Query: 340 ITKIAAASKRPDKVRNM 356
           IT++A+A++RP +V  M
Sbjct: 124 ITRLASATQRPQQVIGM 140

Length = 295

>gnl|CDD|201191 pfam00378, ECH, Enoyl-CoA hydratase/isomerase family

 Score = 98.9 bits (247), Expect = 4e-24
 Identities = 58/160 (36%), Positives = 80/160 (50%), Gaps = 31/160 (19%)

Query: 10  VALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADK 69
           +ALAC YRI   + K   GLPEV LG++PGAGGTQRLP++  +   L+M LTG+ ++A +
Sbjct: 108 LALACDYRIAADNAK--FGLPEVKLGIIPGAGGTQRLPRIIGVSAALEMLLTGRRIRAQE 165

Query: 70  AKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASG-KLKINRTKPMIPDKVL 128
           A KMG+VD++V         PEE+    L E A+  A +LA    L +   K  +     
Sbjct: 166 ALKMGLVDKVV---------PEEQ----LVEEAIELAQRLADKPPLALAALKAAM----- 207

Query: 129 DVALKFEFVRNQIFGKAKEKVMKMSGGLYPAPLKILDVVR 168
                           A  +V   +  LYPAP    DV  
Sbjct: 208 ----------RAALEDALPEVRAQALRLYPAPFSTDDVKE 237

This family contains a diverse set of enzymes including: Enoyl-CoA hydratase. Napthoate synthase. Carnitate racemase. 3-hydoxybutyryl-CoA dehydratase. Dodecanoyl-CoA delta-isomerase. Length = 245

>gnl|CDD|188207 TIGR02279, PaaC-3OHAcCoADH, 3-hydroxyacyl-CoA dehydrogenase PaaC

 Score =  101 bits (252), Expect = 2e-23
 Identities = 50/139 (35%), Positives = 82/139 (58%)

Query: 218 TPVKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMS 277
           T V TVAV+GAG MGAGIA V    G+  ++ D   + LAR +  I+  L+  V + K++
Sbjct: 3   TNVVTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAEALARAIAGIEARLNSLVTKGKLT 62

Query: 278 ALDRDRYLASLVGTLSYDPFKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSA 337
           A + +R L  L+         +A +VIEA+ E++ +K  +  ++E + P   ++A+NTS+
Sbjct: 63  AEECERTLKRLIPVTDLHALADAGLVIEAIVENLEVKKALFAQLEELCPADTIIASNTSS 122

Query: 338 IPITKIAAASKRPDKVRNM 356
           + IT IAA   RP++V  +
Sbjct: 123 LSITAIAAGLARPERVAGL 141

This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families. Length = 503

>gnl|CDD|180361 PRK06035, PRK06035, 3-hydroxyacyl-CoA dehydrogenase; Validated

 Score = 98.0 bits (244), Expect = 2e-23
 Identities = 49/140 (35%), Positives = 81/140 (57%), Gaps = 3/140 (2%)

Query: 220 VKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTG---LDGAVKRKKM 276
           +K + V+G+G+MG GIA V    GY+  + D  E+ L   +  I++G   L   V++ KM
Sbjct: 3   IKVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKM 62

Query: 277 SALDRDRYLASLVGTLSYDPFKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTS 336
           S  +    +A +  + SY+   +AD ++EAV E +++K +V  E+E  V P  ++A+NTS
Sbjct: 63  SEDEAKAIMARIRTSTSYESLSDADFIVEAVPEKLDLKRKVFAELERNVSPETIIASNTS 122

Query: 337 AIPITKIAAASKRPDKVRNM 356
            I I +IA A +R D+   M
Sbjct: 123 GIMIAEIATALERKDRFIGM 142

Length = 291

>gnl|CDD|235707 PRK06130, PRK06130, 3-hydroxybutyryl-CoA dehydrogenase; Validated

 Score = 94.8 bits (236), Expect = 4e-22
 Identities = 44/144 (30%), Positives = 69/144 (47%), Gaps = 14/144 (9%)

Query: 218 TPVKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMS 277
            P++ +A++GAG MG+GIA +   KG   ++ D  E  L R  G I+  L          
Sbjct: 2   NPIQNLAIIGAGTMGSGIAALFARKGLQVVLIDVMEGALERARGVIERAL---------G 52

Query: 278 ALDRDRYLASLVGTLSYDP-----FKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVA 332
                   ++ +G +  +         AD+VIEAV E + +K  V   ++ +  P  + A
Sbjct: 53  VYAPLGIASAGMGRIRMEAGLAAAVSGADLVIEAVPEKLELKRDVFARLDGLCDPDTIFA 112

Query: 333 TNTSAIPITKIAAASKRPDKVRNM 356
           TNTS +PIT IA A  RP++    
Sbjct: 113 TNTSGLPITAIAQAVTRPERFVGT 136

Length = 311

>gnl|CDD|223955 COG1024, CaiD, Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism]

 Score = 86.7 bits (215), Expect = 1e-19
 Identities = 48/140 (34%), Positives = 68/140 (48%), Gaps = 8/140 (5%)

Query: 11  ALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKA 70
           ALAC  RI  +D K   GLPEV LGLLPG GGTQRLP+L       ++ LTG+ + A +A
Sbjct: 117 ALACDIRIAAEDAK--FGLPEVNLGLLPGDGGTQRLPRLLGRGRAKELLLTGEPISAAEA 174

Query: 71  KKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDV 130
            ++G+VD++V           ER +E    +A    + LA+ K  +         + L+ 
Sbjct: 175 LELGLVDEVVPDAE----ELLERALELARRLAAPPLA-LAATKRLVRAALEADLAEALEA 229

Query: 131 ALKFEFVRNQIFGKAKEKVM 150
                F R       +E V 
Sbjct: 230 EAL-AFARLFSSEDFREGVR 248

Length = 257

>gnl|CDD|119339 cd06558, crotonase-like, Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily

 Score = 84.5 bits (210), Expect = 2e-19
 Identities = 35/94 (37%), Positives = 52/94 (55%), Gaps = 7/94 (7%)

Query: 8   ATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKA 67
             +ALAC  RI  +D     GLPEV LGL+PG GGTQRLP+L       ++ LTG+ + A
Sbjct: 109 LELALACDIRIAAED--AKFGLPEVKLGLVPGGGGTQRLPRLVGPARARELLLTGRRISA 166

Query: 68  DKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEV 101
           ++A ++G+VD++V              +E    +
Sbjct: 167 EEALELGLVDEVVPD-----EELLAAALELARRL 195

This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. Many of these play important roles in fatty acid metabolism. In addition to a conserved structural core and the formation of trimers (or dimers of trimers), a common feature in this superfamily is the stabilization of an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two conserved backbone NH groups in active sites that form an oxyanion hole. Length = 195

>gnl|CDD|181359 PRK08293, PRK08293, 3-hydroxybutyryl-CoA dehydrogenase; Validated

 Score = 83.1 bits (206), Expect = 4e-18
 Identities = 45/149 (30%), Positives = 73/149 (48%), Gaps = 30/149 (20%)

Query: 220 VKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSAL 279
           +K V V GAG++G+ IA  T   G++  + D  ++ L +              +++++ L
Sbjct: 3   IKNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDEALEKA-------------KERIAKL 49

Query: 280 DRDRYLASLVG-------------TLSYD---PFKNADMVIEAVFEDINIKHQVIKEIEA 323
             DRY+  L               TL+ D     K+AD+VIEAV ED  IK    +E+  
Sbjct: 50  -ADRYVRDLEATKEAPAEAALNRITLTTDLAEAVKDADLVIEAVPEDPEIKGDFYEELAK 108

Query: 324 VVPPHCVVATNTSAIPITKIAAASKRPDK 352
           V P   + ATN+S +  ++ A A+ RP+K
Sbjct: 109 VAPEKTIFATNSSTLLPSQFAEATGRPEK 137

Length = 287

>gnl|CDD|181069 PRK07657, PRK07657, enoyl-CoA hydratase; Provisional

 Score = 74.8 bits (184), Expect = 2e-15
 Identities = 38/108 (35%), Positives = 61/108 (56%), Gaps = 7/108 (6%)

Query: 11  ALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKA 70
           ALAC +RI  +     LGL E  L ++PGAGGTQRLP+L  +    ++  TG+ + A +A
Sbjct: 116 ALACDFRIAAES--ASLGLTETTLAIIPGAGGTQRLPRLIGVGRAKELIYTGRRISAQEA 173

Query: 71  KKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINR 118
           K++G+V+ +V       +  EE+ +E  E++A N    +   K  I+ 
Sbjct: 174 KEIGLVEFVVPA-----HLLEEKAIEIAEKIASNGPIAVRQAKEAISN 216

Length = 260

>gnl|CDD|181070 PRK07658, PRK07658, enoyl-CoA hydratase; Provisional

 Score = 72.4 bits (178), Expect = 2e-14
 Identities = 36/101 (35%), Positives = 53/101 (52%), Gaps = 15/101 (14%)

Query: 11  ALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKA 70
           A++CH R   +  K  LGLPE+ LGL+PG  GTQRLP+       L+M LT + +   +A
Sbjct: 113 AMSCHIRFATESAK--LGLPELNLGLIPGFAGTQRLPRYVGKAKALEMMLTSEPITGAEA 170

Query: 71  KKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLAS 111
            K G+V+ +          PEE     L++ A   A ++A 
Sbjct: 171 LKWGLVNGV---------FPEE---TLLDD-AKKLAKKIAG 198

Length = 257

>gnl|CDD|182026 PRK09674, PRK09674, enoyl-CoA hydratase-isomerase; Provisional

 Score = 66.3 bits (162), Expect = 2e-12
 Identities = 37/116 (31%), Positives = 57/116 (49%), Gaps = 18/116 (15%)

Query: 2   FAEPSLATV---------ALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTAL 52
           F +P +A V          LA    IV+  +    GLPE+ LG++PGAGGTQRL +    
Sbjct: 91  FNKPLIAAVNGYALGAGCELALLCDIVIAGENARFGLPEITLGIMPGAGGTQRLIRSVGK 150

Query: 53  PNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQ 108
                M LTG+++ A +A++ G+V ++          P E T+E   ++A   A  
Sbjct: 151 SLASQMVLTGESITAQQAQQAGLVSEV---------FPPELTLERALQLASKIARH 197

Length = 255

>gnl|CDD|180270 PRK05809, PRK05809, 3-hydroxybutyryl-CoA dehydratase; Validated

 Score = 64.0 bits (156), Expect = 1e-11
 Identities = 28/73 (38%), Positives = 46/73 (63%), Gaps = 2/73 (2%)

Query: 10  VALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADK 69
           +++AC  RI  +  K   G PEV LG+ PG GGTQRL ++       ++  TG  + A++
Sbjct: 115 LSMACDIRIASEKAK--FGQPEVGLGITPGFGGTQRLARIVGPGKAKELIYTGDMINAEE 172

Query: 70  AKKMGIVDQLVEP 82
           A ++G+V+++VEP
Sbjct: 173 ALRIGLVNKVVEP 185

Length = 260

>gnl|CDD|236162 PRK08138, PRK08138, enoyl-CoA hydratase; Provisional

 Score = 63.5 bits (155), Expect = 1e-11
 Identities = 29/70 (41%), Positives = 42/70 (60%)

Query: 12  LACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAK 71
           LA H  I+V  +    G PE+ +GL+PGAGGTQRL +       + M LTG  + A +A 
Sbjct: 116 LAMHADIIVAGESASFGQPEIKVGLMPGAGGTQRLVRAVGKFKAMRMALTGCMVPAPEAL 175

Query: 72  KMGIVDQLVE 81
            +G+V ++VE
Sbjct: 176 AIGLVSEVVE 185

Length = 261

>gnl|CDD|236373 PRK09076, PRK09076, enoyl-CoA hydratase; Provisional

 Score = 62.6 bits (153), Expect = 3e-11
 Identities = 30/72 (41%), Positives = 43/72 (59%), Gaps = 2/72 (2%)

Query: 10  VALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADK 69
            ALAC  RI   +++  + LPE  +GLLP AGGTQ LP L        M L G+ + A  
Sbjct: 113 CALACDIRIA--EEQAQMALPEASVGLLPCAGGTQNLPWLVGEGWAKRMILCGERVDAAT 170

Query: 70  AKKMGIVDQLVE 81
           A ++G+V+++VE
Sbjct: 171 ALRIGLVEEVVE 182

Length = 258

>gnl|CDD|178210 PLN02600, PLN02600, enoyl-CoA hydratase

 Score = 59.8 bits (145), Expect = 3e-10
 Identities = 29/71 (40%), Positives = 43/71 (60%), Gaps = 2/71 (2%)

Query: 10  VALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADK 69
           +AL+C  RI  ++     GLPE  L ++PGAGGTQRLP+L       ++  TG+ + A +
Sbjct: 106 LALSCDLRICGEEAV--FGLPETGLAIIPGAGGTQRLPRLVGRSRAKELIFTGRRIGARE 163

Query: 70  AKKMGIVDQLV 80
           A  MG+V+  V
Sbjct: 164 AASMGLVNYCV 174

Length = 251

>gnl|CDD|180295 PRK05862, PRK05862, enoyl-CoA hydratase; Provisional

 Score = 57.7 bits (140), Expect = 1e-09
 Identities = 22/55 (40%), Positives = 36/55 (65%)

Query: 28  GLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEP 82
           G PE+ LG+LPG GG+QRL +       +D+ LTG+ + A +A++ G+V ++V  
Sbjct: 128 GQPEIKLGVLPGMGGSQRLTRAVGKAKAMDLCLTGRMMDAAEAERAGLVSRVVPA 182

Length = 257

>gnl|CDD|181254 PRK08150, PRK08150, enoyl-CoA hydratase; Provisional

 Score = 57.7 bits (140), Expect = 1e-09
 Identities = 32/95 (33%), Positives = 48/95 (50%), Gaps = 7/95 (7%)

Query: 11  ALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKA 70
           A A H R  V D+ T   LPE   G+  G GG+ R+P+L  +  + DM LTG+   A + 
Sbjct: 111 ASAAHIR--VADESTYFALPEGQRGIFVGGGGSVRVPRLIGVARMTDMMLTGRVYDAQEG 168

Query: 71  KKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNT 105
           +++G+   LV   G  L    ++ ME    +A N 
Sbjct: 169 ERLGLAQYLVPA-GEAL----DKAMELARRIAQNA 198

Length = 255

>gnl|CDD|179599 PRK03580, PRK03580, carnitinyl-CoA dehydratase; Provisional

 Score = 56.2 bits (136), Expect = 4e-09
 Identities = 33/103 (32%), Positives = 53/103 (51%), Gaps = 15/103 (14%)

Query: 10  VALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADK 69
           +ALA  + IV  D  +   LPE  LG++P +GG  RLPK        +M +TG+ + A++
Sbjct: 112 LALAADF-IVCADNAS-FALPEAKLGIVPDSGGVLRLPKRLPPAIANEMVMTGRRMDAEE 169

Query: 70  AKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASG 112
           A + GIV+++V         P+   M+   E+    A QL + 
Sbjct: 170 ALRWGIVNRVV---------PQAELMDRAREL----AQQLVNS 199

Length = 261

>gnl|CDD|235706 PRK06129, PRK06129, 3-hydroxyacyl-CoA dehydrogenase; Validated

 Score = 57.0 bits (138), Expect = 4e-09
 Identities = 35/130 (26%), Positives = 63/130 (48%), Gaps = 3/130 (2%)

Query: 219 PVKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSA 278
           P+ +VA++GAGL+G   A V    G+   + D+     A     I   L+       +  
Sbjct: 1   PMGSVAIIGAGLIGRAWAIVFARAGHEVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDG 60

Query: 279 LDRDRYLA--SLVGTLSYDPFKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTS 336
              D  LA   +  +L+ D   +AD V E+  E++ +K  +  E++A+ PPH ++A++TS
Sbjct: 61  EAPDAVLARIRVTDSLA-DAVADADYVQESAPENLELKRALFAELDALAPPHAILASSTS 119

Query: 337 AIPITKIAAA 346
           A+  +     
Sbjct: 120 ALLASAFTEH 129

Length = 308

>gnl|CDD|180591 PRK06494, PRK06494, enoyl-CoA hydratase; Provisional

 Score = 55.8 bits (135), Expect = 6e-09
 Identities = 27/73 (36%), Positives = 40/73 (54%), Gaps = 2/73 (2%)

Query: 10  VALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADK 69
           +ALAC   IV  +  T   LPE  +GL   AGG  RLP+   L   + M LTG+ + A +
Sbjct: 112 LALACDL-IVAAENAT-FALPEPRVGLAALAGGLHRLPRQIGLKRAMGMILTGRRVTARE 169

Query: 70  AKKMGIVDQLVEP 82
             ++G V+++V  
Sbjct: 170 GLELGFVNEVVPA 182

Length = 259

>gnl|CDD|181325 PRK08252, PRK08252, enoyl-CoA hydratase; Provisional

 Score = 55.8 bits (135), Expect = 6e-09
 Identities = 28/73 (38%), Positives = 44/73 (60%), Gaps = 2/73 (2%)

Query: 10  VALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADK 69
           +ALAC   ++V  +    GLPEV  GL+   GG  RLP+       +++ LTG  L A++
Sbjct: 109 LALACD--LIVAARDAKFGLPEVKRGLVAAGGGLLRLPRRIPYHIAMELALTGDMLTAER 166

Query: 70  AKKMGIVDQLVEP 82
           A ++G+V++L EP
Sbjct: 167 AHELGLVNRLTEP 179

Length = 254

>gnl|CDD|235852 PRK06688, PRK06688, enoyl-CoA hydratase; Provisional

 Score = 52.9 bits (128), Expect = 5e-08
 Identities = 25/73 (34%), Positives = 40/73 (54%)

Query: 10  VALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADK 69
           V+LA    +V   +     LP   LGL P AGG+  LP+L       +M L G+ L A++
Sbjct: 112 VSLALACDLVYASESAKFSLPFAKLGLCPDAGGSALLPRLIGRARAAEMLLLGEPLSAEE 171

Query: 70  AKKMGIVDQLVEP 82
           A ++G+V+++V  
Sbjct: 172 ALRIGLVNRVVPA 184

Length = 259

>gnl|CDD|236338 PRK08788, PRK08788, enoyl-CoA hydratase; Validated

 Score = 52.6 bits (127), Expect = 9e-08
 Identities = 25/77 (32%), Positives = 41/77 (53%), Gaps = 12/77 (15%)

Query: 11  ALACHYRIVVKDKKTGLGLPEVMLGLLPGAGG----TQRL-PKLTALPNVLDMTLTGKTL 65
           AL+ H   ++ ++   +G PE++  L PG G      +R+ PKL       ++ L+GK  
Sbjct: 140 ALSHHT--IIAERGAKMGFPEILFNLFPGMGAYSFLARRVGPKLAE-----ELILSGKLY 192

Query: 66  KADKAKKMGIVDQLVEP 82
            A++   MG+VD LVE 
Sbjct: 193 TAEELHDMGLVDVLVED 209

Length = 287

>gnl|CDD|181340 PRK08269, PRK08269, 3-hydroxybutyryl-CoA dehydrogenase; Validated

 Score = 52.0 bits (125), Expect = 2e-07
 Identities = 32/136 (23%), Positives = 58/136 (42%), Gaps = 10/136 (7%)

Query: 231 MGAGIAHVTVDKGYNTIVKD-------SFEKGLARGLGQIKTGLDGAVKRKKMSALDRDR 283
           MG GIA      G++  + D        +    A    +I+  L   V   ++ A   D 
Sbjct: 1   MGQGIALAFAFAGHDVTLIDFKPRDAAGWRALDAEARAEIERTLAALVALGRIDAAQADA 60

Query: 284 YLA--SLVG-TLSYDPFKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPI 340
            LA  ++V    + D   +AD+V EAV E ++ K + ++ +   V    ++A+ TS   +
Sbjct: 61  VLARIAVVARDGAADALADADLVFEAVPEVLDAKREALRWLGRHVDADAIIASTTSTFLV 120

Query: 341 TKIAAASKRPDKVRNM 356
           T +      P++  N 
Sbjct: 121 TDLQRHVAHPERFLNA 136

Length = 314

>gnl|CDD|180335 PRK05980, PRK05980, enoyl-CoA hydratase; Provisional

 Score = 50.9 bits (122), Expect = 3e-07
 Identities = 22/53 (41%), Positives = 34/53 (64%)

Query: 30  PEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEP 82
           PE+ LG+ P  GGTQRLP+L      L++ LTG    A++A ++G+V+ +V  
Sbjct: 136 PEIRLGMPPTFGGTQRLPRLAGRKRALELLLTGDAFSAERALEIGLVNAVVPH 188

Length = 260

>gnl|CDD|181008 PRK07509, PRK07509, enoyl-CoA hydratase; Provisional

 Score = 49.5 bits (119), Expect = 8e-07
 Identities = 29/110 (26%), Positives = 48/110 (43%), Gaps = 9/110 (8%)

Query: 10  VALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADK 69
           +AL    RI   D K  L + E   GL+P   GT  L  L       ++T T +   A++
Sbjct: 120 IALGADIRIAAPDTK--LSIMEAKWGLVPDMAGTVSLRGLVRKDVARELTYTARVFSAEE 177

Query: 70  AKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRT 119
           A ++G+V  + +        P    +    E+A  +   +A+ K  INR+
Sbjct: 178 ALELGLVTHVSD-------DPLAAALALAREIAQRSPDAIAAAKRLINRS 220

Length = 262

>gnl|CDD|180472 PRK06210, PRK06210, enoyl-CoA hydratase; Provisional

 Score = 46.6 bits (111), Expect = 7e-06
 Identities = 24/72 (33%), Positives = 43/72 (59%), Gaps = 5/72 (6%)

Query: 35  GLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERT 94
           GL+   G +  LP+L    N LD+ L+ +T  A++A ++G+V+++V P     +   ERT
Sbjct: 149 GLIAEHGISWILPRLVGHANALDLLLSARTFYAEEALRLGLVNRVVPP-----DELMERT 203

Query: 95  MEYLEEVAVNTA 106
           + Y E++A N +
Sbjct: 204 LAYAEDLARNVS 215

Length = 272

>gnl|CDD|236205 PRK08259, PRK08259, enoyl-CoA hydratase; Provisional

 Score = 45.7 bits (109), Expect = 2e-05
 Identities = 20/52 (38%), Positives = 31/52 (59%), Gaps = 1/52 (1%)

Query: 41  GGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEE 92
           GGT RLP+L      +D+ LTG+ + AD+A  +G+ +++V P G      EE
Sbjct: 140 GGTVRLPRLIGHSRAMDLILTGRPVDADEALAIGLANRVV-PKGQARAAAEE 190

Length = 254

>gnl|CDD|181723 PRK09245, PRK09245, enoyl-CoA hydratase; Provisional

 Score = 44.6 bits (106), Expect = 4e-05
 Identities = 18/51 (35%), Positives = 28/51 (54%)

Query: 32  VMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEP 82
           V LGL+PG GG   LP++  +    +M  TG  + A  A + G+V ++V  
Sbjct: 141 VKLGLIPGDGGAWLLPRIIGMARAAEMAFTGDAIDAATALEWGLVSRVVPA 191

Length = 266

>gnl|CDD|235632 PRK05869, PRK05869, enoyl-CoA hydratase; Validated

 Score = 43.7 bits (103), Expect = 5e-05
 Identities = 21/74 (28%), Positives = 39/74 (52%), Gaps = 2/74 (2%)

Query: 9   TVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKAD 68
           T+ALA  +R+   + K   G  E++ GL P   G  RL +        ++  +G+   A+
Sbjct: 116 TLALAADWRVSGDNVK--FGATEILAGLAPSGDGMARLTRAAGPSRAKELVFSGRFFDAE 173

Query: 69  KAKKMGIVDQLVEP 82
           +A  +G++D++V P
Sbjct: 174 EALALGLIDEMVAP 187

Length = 222

>gnl|CDD|235705 PRK06127, PRK06127, enoyl-CoA hydratase; Provisional

 Score = 43.9 bits (104), Expect = 5e-05
 Identities = 29/107 (27%), Positives = 46/107 (42%), Gaps = 7/107 (6%)

Query: 10  VALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADK 69
           +ALAC  RI  +D +   G+P   LGL  G  G + L  L       D+  T +   A +
Sbjct: 124 IALACDIRIAAEDSR--FGIPAARLGLGYGYDGVKNLVDLVGPSAAKDLFYTARRFDAAE 181

Query: 70  AKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKI 116
           A ++G+V ++        +  E    +Y   +A N    L + K  I
Sbjct: 182 ALRIGLVHRVTAA-----DDLETALADYAATIAGNAPLTLRAAKRAI 223

Length = 269

>gnl|CDD|236044 PRK07531, PRK07531, bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated

 Score = 44.0 bits (104), Expect = 9e-05
 Identities = 30/141 (21%), Positives = 63/141 (44%), Gaps = 13/141 (9%)

Query: 218 TPVKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMS 277
           T +   A +G G++G G A   +  G +  V D   +   R +G++    + A      +
Sbjct: 2   TMIMKAACIGGGVIGGGWAARFLLAGIDVAVFDPHPEA-ERIIGEVLANAERAYAMLTDA 60

Query: 278 ALDRDRYLASLVGTLSY-----DPFKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVA 332
            L  +       G L++     +    AD + E+V E +++K +V+ EI+A   P  ++ 
Sbjct: 61  PLPPE-------GRLTFCASLAEAVAGADWIQESVPERLDLKRRVLAEIDAAARPDALIG 113

Query: 333 TNTSAIPITKIAAASKRPDKV 353
           ++TS    + +      P+++
Sbjct: 114 SSTSGFLPSDLQEGMTHPERL 134

Length = 495

>gnl|CDD|181122 PRK07799, PRK07799, enoyl-CoA hydratase; Provisional

 Score = 42.4 bits (100), Expect = 2e-04
 Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 5/77 (6%)

Query: 28  GLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGL 87
           G+ E    L P  G   RL +        D+ LTG+ + A +AK++G++  +V P G  L
Sbjct: 134 GISEAKWSLFPMGGSAVRLVRQIPYTVACDLLLTGRHITAAEAKEIGLIGHVV-PDGQAL 192

Query: 88  NHPEERTMEYLEEVAVN 104
               ++ +E  E +  N
Sbjct: 193 ----DKALELAELINAN 205

Length = 263

>gnl|CDD|180625 PRK06563, PRK06563, enoyl-CoA hydratase; Provisional

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 30/85 (35%), Positives = 41/85 (48%), Gaps = 5/85 (5%)

Query: 18  IVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVD 77
           IVV    T     EV  G+LP  G T R P+     N +   LTG    A +A ++G+V 
Sbjct: 116 IVVAADNTRFAQLEVQRGILPFGGATLRFPQAAGWGNAMRYLLTGDEFDAQEALRLGLVQ 175

Query: 78  QLVEPLGPGLNHPEERTMEYLEEVA 102
           ++V P G  L    ER +E  E +A
Sbjct: 176 EVVPP-GEQL----ERAIELAERIA 195

Length = 255

>gnl|CDD|213787 TIGR03222, benzo_boxC, benzoyl-CoA-dihydrodiol lyase

 Score = 42.1 bits (99), Expect = 4e-04
 Identities = 27/76 (35%), Positives = 47/76 (61%), Gaps = 3/76 (3%)

Query: 10  VALACHYRIVVKDKKTGLGLPEV-MLGLLPGAGGTQRLP-KLTALPNVLDMTLT-GKTLK 66
           +ALAC   ++V D+ + + LPEV +LG+LPG GG  R+  K     +  D+  T  + ++
Sbjct: 137 LALACDEIMLVDDRSSSVSLPEVPLLGVLPGTGGLTRVTDKRRVRRDHADIFCTIEEGVR 196

Query: 67  ADKAKKMGIVDQLVEP 82
             +AK+  +VD++V+P
Sbjct: 197 GKRAKEWRLVDEVVKP 212

In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH. Length = 546

>gnl|CDD|131333 TIGR02280, PaaB1, phenylacetate degradation probable enoyl-CoA hydratase paaB

 Score = 41.4 bits (97), Expect = 4e-04
 Identities = 34/128 (26%), Positives = 55/128 (42%), Gaps = 11/128 (8%)

Query: 8   ATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKA 67
           A +ALAC   IV+  +          +GL+P +GGT  LP+L      + + + G+ L A
Sbjct: 109 ANLALACD--IVLAAESARFIQAFAKIGLIPDSGGTWSLPRLVGRARAMGLAMLGEKLDA 166

Query: 68  DKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKV 127
             A   G++ Q+V+         +   M+  + +AV+ A+Q   G     R         
Sbjct: 167 RTAASWGLIWQVVD---------DAALMDEAQALAVHLAAQPTRGLALTKRAIQAAATNS 217

Query: 128 LDVALKFE 135
           LD  L  E
Sbjct: 218 LDTQLDLE 225

This family of proteins are found within apparent operons for the degradation of phenylacetic acid. These proteins contain the enoyl-CoA hydratase domain as detected by pfam00378. This activity is consistent with current hypotheses for the degradation pathway which involve the ligation of phenylacetate with coenzyme A (paaF), hydroxylation (paaGHIJK), ring-opening (paaN) and degradation of the resulting fatty acid-like compound to a Krebs cycle intermediate (paaABCDE). Length = 256

>gnl|CDD|181274 PRK08184, PRK08184, benzoyl-CoA-dihydrodiol lyase; Provisional

 Score = 41.9 bits (99), Expect = 4e-04
 Identities = 18/37 (48%), Positives = 26/37 (70%), Gaps = 1/37 (2%)

Query: 11  ALACHYRIVVKDKKTGLGLPEV-MLGLLPGAGGTQRL 46
           ALAC   ++V D+ + + LPEV +LG+LPG GG  R+
Sbjct: 142 ALACDEIVLVDDRSSAVSLPEVPLLGVLPGTGGLTRV 178

Length = 550

>gnl|CDD|178269 PLN02664, PLN02664, enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA isomerase

 Score = 41.0 bits (96), Expect = 5e-04
 Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 2/70 (2%)

Query: 10  VALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADK 69
           +  AC  R   +D      + EV L +    G  QRLP +    N +++ LTG+     +
Sbjct: 129 IVTACDIRYCSED--AFFSVKEVDLAITADLGTLQRLPSIVGYGNAMELALTGRRFSGSE 186

Query: 70  AKKMGIVDQL 79
           AK++G+V ++
Sbjct: 187 AKELGLVSRV 196

Length = 275

>gnl|CDD|235733 PRK06190, PRK06190, enoyl-CoA hydratase; Provisional

 Score = 40.7 bits (96), Expect = 5e-04
 Identities = 18/49 (36%), Positives = 28/49 (57%)

Query: 34  LGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEP 82
           +G+LPG G + RLP+   +     M+LTG  L A  A + G+V ++V  
Sbjct: 134 VGILPGWGLSVRLPQKVGIGRARRMSLTGDFLDAADALRAGLVTEVVPH 182

Length = 258

>gnl|CDD|236163 PRK08140, PRK08140, enoyl-CoA hydratase; Provisional

 Score = 39.5 bits (93), Expect = 0.001
 Identities = 25/74 (33%), Positives = 44/74 (59%), Gaps = 2/74 (2%)

Query: 8   ATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKA 67
           A +ALAC   IV+  +        V +GL+P +GGT  LP+L  +   L + L G+ L A
Sbjct: 115 ANLALACD--IVLAARSASFIQAFVKIGLVPDSGGTWFLPRLVGMARALGLALLGEKLSA 172

Query: 68  DKAKKMGIVDQLVE 81
           ++A++ G++ ++V+
Sbjct: 173 EQAEQWGLIWRVVD 186

Length = 262

>gnl|CDD|180423 PRK06143, PRK06143, enoyl-CoA hydratase; Provisional

 Score = 38.9 bits (91), Expect = 0.002
 Identities = 25/73 (34%), Positives = 38/73 (52%), Gaps = 3/73 (4%)

Query: 10  VALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADK 69
           +A AC  RI   D +   G+PEV +G+ P       LP+L        + LTG+T+ A +
Sbjct: 118 LAAACDLRIAAHDAQ--FGMPEVRVGI-PSVIHAALLPRLIGWARTRWLLLTGETIDAAQ 174

Query: 70  AKKMGIVDQLVEP 82
           A   G+VD++V  
Sbjct: 175 ALAWGLVDRVVPL 187

Length = 256

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	359
TIGR02441	737	fa_ox_alpha_mit fatty acid oxidation complex, alph	100.0
TIGR02437	714	FadB fatty oxidation complex, alpha subunit FadB.	100.0
PRK11730	715	fadB multifunctional fatty acid oxidation complex	100.0
PRK11154	708	fadJ multifunctional fatty acid oxidation complex	100.0
TIGR02440	699	FadJ fatty oxidation complex, alpha subunit FadJ.	100.0
KOG1680|consensus	290		99.97
PRK08150	255	enoyl-CoA hydratase; Provisional	99.96
PRK05862	257	enoyl-CoA hydratase; Provisional	99.96
PLN02600	251	enoyl-CoA hydratase	99.96
PRK08252	254	enoyl-CoA hydratase; Provisional	99.96
PRK05980	260	enoyl-CoA hydratase; Provisional	99.96
TIGR02280	256	PaaB1 phenylacetate degradation probable enoyl-CoA	99.96
PRK09076	258	enoyl-CoA hydratase; Provisional	99.96
PRK07658	257	enoyl-CoA hydratase; Provisional	99.96
PRK06563	255	enoyl-CoA hydratase; Provisional	99.96
PRK08138	261	enoyl-CoA hydratase; Provisional	99.96
PRK09674	255	enoyl-CoA hydratase-isomerase; Provisional	99.96
PRK05809	260	3-hydroxybutyryl-CoA dehydratase; Validated	99.96
PRK07799	263	enoyl-CoA hydratase; Provisional	99.96
PRK06494	259	enoyl-CoA hydratase; Provisional	99.96
PRK08140	262	enoyl-CoA hydratase; Provisional	99.96
PRK09245	266	enoyl-CoA hydratase; Provisional	99.96
PLN02664	275	enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA	99.96
PRK06142	272	enoyl-CoA hydratase; Provisional	99.96
PRK07657	260	enoyl-CoA hydratase; Provisional	99.96
PLN02888	265	enoyl-CoA hydratase	99.96
PRK06127	269	enoyl-CoA hydratase; Provisional	99.96
PRK07511	260	enoyl-CoA hydratase; Provisional	99.96
PRK03580	261	carnitinyl-CoA dehydratase; Provisional	99.96
PRK08258	277	enoyl-CoA hydratase; Provisional	99.96
PRK07659	260	enoyl-CoA hydratase; Provisional	99.96
PLN03214	278	probable enoyl-CoA hydratase/isomerase; Provisiona	99.96
TIGR01929	259	menB naphthoate synthase (dihydroxynaphthoic acid	99.95
PRK08139	266	enoyl-CoA hydratase; Validated	99.95
PRK06143	256	enoyl-CoA hydratase; Provisional	99.95
PRK05981	266	enoyl-CoA hydratase; Provisional	99.95
PRK06688	259	enoyl-CoA hydratase; Provisional	99.95
PRK06210	272	enoyl-CoA hydratase; Provisional	99.95
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	99.95
PRK05995	262	enoyl-CoA hydratase; Provisional	99.95
PRK07468	262	enoyl-CoA hydratase; Provisional	99.95
PRK07396	273	dihydroxynaphthoic acid synthetase; Validated	99.95
PRK09120	275	p-hydroxycinnamoyl CoA hydratase/lyase; Validated	99.95
TIGR03210	256	badI 2-ketocyclohexanecarboxyl-CoA hydrolase. Memb	99.95
PRK07260	255	enoyl-CoA hydratase; Provisional	99.95
COG1250	307	FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabo	99.95
PRK05674	265	gamma-carboxygeranoyl-CoA hydratase; Validated	99.95
PRK08259	254	enoyl-CoA hydratase; Provisional	99.95
PRK07509	262	enoyl-CoA hydratase; Provisional	99.95
PRK11423	261	methylmalonyl-CoA decarboxylase; Provisional	99.95
PRK05864	276	enoyl-CoA hydratase; Provisional	99.95
PLN02921	327	naphthoate synthase	99.95
PRK06495	257	enoyl-CoA hydratase; Provisional	99.94
PRK07938	249	enoyl-CoA hydratase; Provisional	99.94
PRK08260	296	enoyl-CoA hydratase; Provisional	99.94
PF00378	245	ECH: Enoyl-CoA hydratase/isomerase family; InterPr	99.94
PRK07327	268	enoyl-CoA hydratase; Provisional	99.94
PRK08321	302	naphthoate synthase; Validated	99.94
PRK06023	251	enoyl-CoA hydratase; Provisional	99.94
PRK07854	243	enoyl-CoA hydratase; Provisional	99.94
PRK06144	262	enoyl-CoA hydratase; Provisional	99.94
TIGR03189	251	dienoyl_CoA_hyt cyclohexa-1,5-dienecarbonyl-CoA hy	99.94
PLN02157	401	3-hydroxyisobutyryl-CoA hydrolase-like protein	99.94
COG1024	257	CaiD Enoyl-CoA hydratase/carnithine racemase [Lipi	99.94
PRK12478	298	enoyl-CoA hydratase; Provisional	99.94
PRK06072	248	enoyl-CoA hydratase; Provisional	99.94
PRK07827	260	enoyl-CoA hydratase; Provisional	99.94
PRK05617	342	3-hydroxyisobutyryl-CoA hydrolase; Provisional	99.93
PRK05870	249	enoyl-CoA hydratase; Provisional	99.93
PRK08184	550	benzoyl-CoA-dihydrodiol lyase; Provisional	99.93
TIGR03222	546	benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the p	99.93
PLN02874	379	3-hydroxyisobutyryl-CoA hydrolase-like protein	99.93
PRK07112	255	polyketide biosynthesis enoyl-CoA hydratase; Valid	99.93
PRK07110	249	polyketide biosynthesis enoyl-CoA hydratase; Valid	99.93
PRK07819	286	3-hydroxybutyryl-CoA dehydrogenase; Validated	99.93
PLN02988	381	3-hydroxyisobutyryl-CoA hydrolase	99.93
PRK06190	258	enoyl-CoA hydratase; Provisional	99.92
KOG1679|consensus	291		99.91
PLN02851	407	3-hydroxyisobutyryl-CoA hydrolase-like protein	99.91
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	99.91
PRK08268	507	3-hydroxy-acyl-CoA dehydrogenase; Validated	99.9
TIGR02279	503	PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa	99.9
KOG2304|consensus	298		99.9
PRK08788	287	enoyl-CoA hydratase; Validated	99.9
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	99.89
PRK05808	282	3-hydroxybutyryl-CoA dehydrogenase; Validated	99.88
PRK07530	292	3-hydroxybutyryl-CoA dehydrogenase; Validated	99.88
PRK06035	291	3-hydroxyacyl-CoA dehydrogenase; Validated	99.88
PLN02545	295	3-hydroxybutyryl-CoA dehydrogenase	99.88
KOG1684|consensus	401		99.88
PRK05869	222	enoyl-CoA hydratase; Validated	99.87
PRK06213	229	enoyl-CoA hydratase; Provisional	99.87
PRK08290	288	enoyl-CoA hydratase; Provisional	99.87
PRK09260	288	3-hydroxybutyryl-CoA dehydrogenase; Validated	99.86
TIGR03200	360	dearomat_oah 6-oxocyclohex-1-ene-1-carbonyl-CoA hy	99.86
PRK08272	302	enoyl-CoA hydratase; Provisional	99.83
PRK06129	308	3-hydroxyacyl-CoA dehydrogenase; Validated	99.82
PRK08269	314	3-hydroxybutyryl-CoA dehydrogenase; Validated	99.81
PLN02267	239	enoyl-CoA hydratase/isomerase family protein	99.81
COG0447	282	MenB Dihydroxynaphthoic acid synthase [Coenzyme me	99.8
KOG0016|consensus	266		99.8
KOG1681|consensus	292		99.78
TIGR03222	546	benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the p	99.77
PRK08184	550	benzoyl-CoA-dihydrodiol lyase; Provisional	99.76
PRK07531	495	bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe	99.75
PRK06130	311	3-hydroxybutyryl-CoA dehydrogenase; Validated	99.75
KOG1682|consensus	287		99.74
cd06558	195	crotonase-like Crotonase/Enoyl-Coenzyme A (CoA) hy	99.74
KOG2305|consensus	313		99.69
KOG1683|consensus	380		99.58
PF01210	157	NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate	99.38
PRK07417	279	arogenate dehydrogenase; Reviewed	99.35
PF03446	163	NAD_binding_2: NAD binding domain of 6-phosphogluc	99.35
cd07020	187	Clp_protease_NfeD_1 Nodulation formation efficienc	99.33
COG0240	329	GpsA Glycerol-3-phosphate dehydrogenase [Energy pr	99.32
PRK12491	272	pyrroline-5-carboxylate reductase; Reviewed	99.27
PTZ00082	321	L-lactate dehydrogenase; Provisional	99.27
PLN02688	266	pyrroline-5-carboxylate reductase	99.26
PRK07679	279	pyrroline-5-carboxylate reductase; Reviewed	99.25
PRK11880	267	pyrroline-5-carboxylate reductase; Reviewed	99.23
cd01339	300	LDH-like_MDH L-lactate dehydrogenase-like malate d	99.23
PRK06223	307	malate dehydrogenase; Reviewed	99.22
PRK11199	374	tyrA bifunctional chorismate mutase/prephenate deh	99.21
PTZ00117	319	malate dehydrogenase; Provisional	99.2
COG2084	286	MmsB 3-hydroxyisobutyrate dehydrogenase and relate	99.18
PF03721	185	UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen	99.18
PRK11559	296	garR tartronate semialdehyde reductase; Provisiona	99.16
PF03807	96	F420_oxidored: NADP oxidoreductase coenzyme F420-d	99.15
TIGR01505	291	tartro_sem_red 2-hydroxy-3-oxopropionate reductase	99.15
PRK15461	296	NADH-dependent gamma-hydroxybutyrate dehydrogenase	99.13
PRK06545	359	prephenate dehydrogenase; Validated	99.12
PRK00094	325	gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr	99.12
PRK11064	415	wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro	99.12
PF10727	127	Rossmann-like: Rossmann-like domain; InterPro: IPR	99.11
TIGR01915	219	npdG NADPH-dependent F420 reductase. This model re	99.11
PLN02256	304	arogenate dehydrogenase	99.11
PRK07502	307	cyclohexadienyl dehydrogenase; Validated	99.11
COG0677	436	WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenas	99.1
PRK08655	437	prephenate dehydrogenase; Provisional	99.1
PRK08229	341	2-dehydropantoate 2-reductase; Provisional	99.09
TIGR00872	298	gnd_rel 6-phosphogluconate dehydrogenase (decarbox	99.09
PRK08507	275	prephenate dehydrogenase; Validated	99.08
cd05297	423	GH4_alpha_glucosidase_galactosidase Glycoside Hydr	99.07
TIGR03026	411	NDP-sugDHase nucleotide sugar dehydrogenase. All o	99.07
COG0345	266	ProC Pyrroline-5-carboxylate reductase [Amino acid	99.07
COG0287	279	TyrA Prephenate dehydrogenase [Amino acid transpor	99.06
COG1004	414	Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en	99.06
TIGR01763	305	MalateDH_bact malate dehydrogenase, NAD-dependent.	99.05
TIGR03376	342	glycerol3P_DH glycerol-3-phosphate dehydrogenase (	99.05
PTZ00345	365	glycerol-3-phosphate dehydrogenase; Provisional	99.04
PRK07680	273	late competence protein ComER; Validated	99.02
PTZ00142	470	6-phosphogluconate dehydrogenase; Provisional	99.02
PRK15057	388	UDP-glucose 6-dehydrogenase; Provisional	99.01
PRK06928	277	pyrroline-5-carboxylate reductase; Reviewed	99.0
PRK07634	245	pyrroline-5-carboxylate reductase; Reviewed	99.0
PLN02350	493	phosphogluconate dehydrogenase (decarboxylating)	98.97
PRK12490	299	6-phosphogluconate dehydrogenase-like protein; Rev	98.96
cd00650	263	LDH_MDH_like NAD-dependent, lactate dehydrogenase-	98.96
COG2085	211	Predicted dinucleotide-binding enzymes [General fu	98.93
PRK12439	341	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	98.93
PRK14618	328	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	98.93
PRK06522	304	2-dehydropantoate 2-reductase; Reviewed	98.93
PRK15182	425	Vi polysaccharide biosynthesis protein TviB; Provi	98.92
PRK08818	370	prephenate dehydrogenase; Provisional	98.92
PRK06476	258	pyrroline-5-carboxylate reductase; Reviewed	98.92
PRK09599	301	6-phosphogluconate dehydrogenase-like protein; Rev	98.91
PF00056	141	Ldh_1_N: lactate/malate dehydrogenase, NAD binding	98.89
TIGR01692	288	HIBADH 3-hydroxyisobutyrate dehydrogenase. This en	98.89
PLN02712	667	arogenate dehydrogenase	98.89
PRK14619	308	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	98.88
PRK14620	326	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	98.88
TIGR00873	467	gnd 6-phosphogluconate dehydrogenase, decarboxylat	98.87
KOG0409|consensus	327		98.86
PLN02353	473	probable UDP-glucose 6-dehydrogenase	98.86
PRK15059	292	tartronate semialdehyde reductase; Provisional	98.85
cd07014	177	S49_SppA Signal peptide peptidase A. Signal peptid	98.84
PRK14806	735	bifunctional cyclohexadienyl dehydrogenase/ 3-phos	98.82
PRK12557	342	H(2)-dependent methylenetetrahydromethanopterin de	98.82
PRK05479	330	ketol-acid reductoisomerase; Provisional	98.82
PLN02712	667	arogenate dehydrogenase	98.8
cd05291	306	HicDH_like L-2-hydroxyisocapronate dehydrogenases	98.8
PRK12921	305	2-dehydropantoate 2-reductase; Provisional	98.8
TIGR00465	314	ilvC ketol-acid reductoisomerase. This is the seco	98.78
cd05293	312	LDH_1 A subgroup of L-lactate dehydrogenases. L-la	98.75
PLN02602	350	lactate dehydrogenase	98.74
PRK06249	313	2-dehydropantoate 2-reductase; Provisional	98.7
PRK12480	330	D-lactate dehydrogenase; Provisional	98.7
cd07016	160	S14_ClpP_1 Caseinolytic protease (ClpP) is an ATP-	98.69
cd05292	308	LDH_2 A subgroup of L-lactate dehydrogenases. L-la	98.69
PTZ00431	260	pyrroline carboxylate reductase; Provisional	98.69
cd00300	300	LDH_like L-lactate dehydrogenase-like enzymes. Mem	98.67
PLN02858	1378	fructose-bisphosphate aldolase	98.66
cd05290	307	LDH_3 A subgroup of L-lactate dehydrogenases. L-la	98.66
COG0039	313	Mdh Malate/lactate dehydrogenases [Energy producti	98.65
PRK00066	315	ldh L-lactate dehydrogenase; Reviewed	98.65
TIGR01724	341	hmd_rel H2-forming N(5),N(10)-methenyltetrahydrome	98.64
KOG1495|consensus	332		98.59
PF02558	151	ApbA: Ketopantoate reductase PanE/ApbA; InterPro:	98.59
PRK05708	305	2-dehydropantoate 2-reductase; Provisional	98.56
PRK15076	431	alpha-galactosidase; Provisional	98.54
PLN02858	1378	fructose-bisphosphate aldolase	98.53
TIGR02354	200	thiF_fam2 thiamine biosynthesis protein ThiF, fami	98.53
KOG2711|consensus	372		98.52
cd05294	309	LDH-like_MDH_nadp A lactate dehydrogenases-like st	98.46
TIGR01759	323	MalateDH-SF1 malate dehydrogenase. This model repr	98.45
COG1893	307	ApbA Ketopantoate reductase [Coenzyme metabolism]	98.45
PRK05442	326	malate dehydrogenase; Provisional	98.44
PRK13403	335	ketol-acid reductoisomerase; Provisional	98.41
COG1023	300	Gnd Predicted 6-phosphogluconate dehydrogenase [Ca	98.41
PRK13243	333	glyoxylate reductase; Reviewed	98.39
PLN00112	444	malate dehydrogenase (NADP); Provisional	98.39
PF07991	165	IlvN: Acetohydroxy acid isomeroreductase, catalyti	98.37
PRK08605	332	D-lactate dehydrogenase; Validated	98.37
cd01338	322	MDH_choloroplast_like Chloroplast-like malate dehy	98.36
cd01337	310	MDH_glyoxysomal_mitochondrial Glyoxysomal and mito	98.36
cd01065	155	NAD_bind_Shikimate_DH NAD(P) binding domain of Shi	98.35
TIGR01772	312	MDH_euk_gproteo malate dehydrogenase, NAD-dependen	98.33
TIGR01757	387	Malate-DH_plant malate dehydrogenase, NADP-depende	98.32
TIGR01771	299	L-LDH-NAD L-lactate dehydrogenase. This model repr	98.3
PLN00106	323	malate dehydrogenase	98.3
PRK15469	312	ghrA bifunctional glyoxylate/hydroxypyruvate reduc	98.29
PLN03139	386	formate dehydrogenase; Provisional	98.27
PRK07574	385	formate dehydrogenase; Provisional	98.27
PRK06436	303	glycerate dehydrogenase; Provisional	98.23
cd00704	323	MDH Malate dehydrogenase. Malate dehydrogenase (MD	98.22
TIGR00705	584	SppA_67K signal peptide peptidase SppA, 67K type.	98.16
PTZ00325	321	malate dehydrogenase; Provisional	98.15
PF02153	258	PDH: Prephenate dehydrogenase; InterPro: IPR003099	98.11
TIGR01758	324	MDH_euk_cyt malate dehydrogenase, NAD-dependent. T	98.09
PF02826	178	2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy	98.09
PRK09287	459	6-phosphogluconate dehydrogenase; Validated	98.08
PRK13302	271	putative L-aspartate dehydrogenase; Provisional	98.05
COG0111	324	SerA Phosphoglycerate dehydrogenase and related de	98.01
TIGR01327	525	PGDH D-3-phosphoglycerate dehydrogenase. This mode	97.99
PRK06444	197	prephenate dehydrogenase; Provisional	97.98
cd00394	161	Clp_protease_like Caseinolytic protease (ClpP) is	97.95
PRK13304	265	L-aspartate dehydrogenase; Reviewed	97.94
cd05197	425	GH4_glycoside_hydrolases Glycoside Hydrases Family	97.94
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	97.93
PLN02928	347	oxidoreductase family protein	97.91
PF02056	183	Glyco_hydro_4: Family 4 glycosyl hydrolase; InterP	97.91
COG0362	473	Gnd 6-phosphogluconate dehydrogenase [Carbohydrate	97.9
cd05213	311	NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain	97.89
PF00670	162	AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase	97.88
PRK13581	526	D-3-phosphoglycerate dehydrogenase; Provisional	97.87
PRK14194	301	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.85
PRK11790	409	D-3-phosphoglycerate dehydrogenase; Provisional	97.84
PRK00257	381	erythronate-4-phosphate dehydrogenase; Validated	97.83
PRK08410	311	2-hydroxyacid dehydrogenase; Provisional	97.76
PRK08306	296	dipicolinate synthase subunit A; Reviewed	97.74
cd01336	325	MDH_cytoplasmic_cytosolic Cytoplasmic and cytosoli	97.73
COG0569	225	TrkA K+ transport systems, NAD-binding component [	97.72
PRK06141	314	ornithine cyclodeaminase; Validated	97.71
TIGR00745	293	apbA_panE 2-dehydropantoate 2-reductase. This mode	97.71
cd01075	200	NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l	97.7
cd07021	178	Clp_protease_NfeD_like Nodulation formation effici	97.69
cd05296	419	GH4_P_beta_glucosidase Glycoside Hydrolases Family	97.68
PRK06932	314	glycerate dehydrogenase; Provisional	97.68
PRK06487	317	glycerate dehydrogenase; Provisional	97.68
PRK15438	378	erythronate-4-phosphate dehydrogenase PdxB; Provis	97.67
PRK05086	312	malate dehydrogenase; Provisional	97.66
PRK15409	323	bifunctional glyoxylate/hydroxypyruvate reductase	97.66
PLN02306	386	hydroxypyruvate reductase	97.62
COG4007	340	Predicted dehydrogenase related to H2-forming N5,N	97.6
COG1712	255	Predicted dinucleotide-utilizing enzyme [General f	97.6
TIGR00112	245	proC pyrroline-5-carboxylate reductase. This enzym	97.59
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	97.59
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	97.59
cd05298	437	GH4_GlvA_pagL_like Glycoside Hydrolases Family 4;	97.57
TIGR02371	325	ala_DH_arch alanine dehydrogenase, Archaeoglobus f	97.57
KOG0069|consensus	336		97.56
COG1052	324	LdhA Lactate dehydrogenase and related dehydrogena	97.55
PRK05225	487	ketol-acid reductoisomerase; Validated	97.54
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	97.52
PRK14188	296	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.52
PF13766	118	ECH_C: 2-enoyl-CoA Hydratase C-terminal region; PD	97.49
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	97.46
cd01487	174	E1_ThiF_like E1_ThiF_like. Member of superfamily o	97.44
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	97.42
smart00859	122	Semialdhyde_dh Semialdehyde dehydrogenase, NAD bin	97.42
PRK08618	325	ornithine cyclodeaminase; Validated	97.41
PRK12549	284	shikimate 5-dehydrogenase; Reviewed	97.41
PF01408	120	GFO_IDH_MocA: Oxidoreductase family, NAD-binding R	97.4
PRK04148	134	hypothetical protein; Provisional	97.39
PTZ00075	476	Adenosylhomocysteinase; Provisional	97.37
KOG2380|consensus	480		97.36
COG0059	338	IlvC Ketol-acid reductoisomerase [Amino acid trans	97.34
cd07022	214	S49_Sppa_36K_type Signal peptide peptidase A (SppA	97.34
PRK13301	267	putative L-aspartate dehydrogenase; Provisional	97.34
TIGR00507	270	aroE shikimate 5-dehydrogenase. This model finds p	97.33
PLN02494	477	adenosylhomocysteinase	97.32
KOG2666|consensus	481		97.32
PRK07340	304	ornithine cyclodeaminase; Validated	97.31
cd07019	211	S49_SppA_1 Signal peptide peptidase A (SppA), a se	97.3
TIGR02992	326	ectoine_eutC ectoine utilization protein EutC. Mem	97.26
PRK08644	212	thiamine biosynthesis protein ThiF; Provisional	97.26
PF01113	124	DapB_N: Dihydrodipicolinate reductase, N-terminus;	97.25
PRK14179	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.25
PRK00277	200	clpP ATP-dependent Clp protease proteolytic subuni	97.2
TIGR01035	417	hemA glutamyl-tRNA reductase. This enzyme, togethe	97.2
PRK08291	330	ectoine utilization protein EutC; Validated	97.2
TIGR00706	207	SppA_dom signal peptide peptidase SppA, 36K type.	97.19
cd01078	194	NAD_bind_H4MPT_DH NADP binding domain of methylene	97.19
KOG3124|consensus	267		97.16
PRK00258	278	aroE shikimate 5-dehydrogenase; Reviewed	97.12
PRK06046	326	alanine dehydrogenase; Validated	97.12
PF01118	121	Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi	97.1
cd07015	172	Clp_protease_NfeD Nodulation formation efficiency	97.1
PRK13940	414	glutamyl-tRNA reductase; Provisional	97.09
COG1486	442	CelF Alpha-galactosidases/6-phospho-beta-glucosida	97.09
PRK06407	301	ornithine cyclodeaminase; Provisional	97.08
COG2423	330	Predicted ornithine cyclodeaminase, mu-crystallin	97.05
PRK09310	477	aroDE bifunctional 3-dehydroquinate dehydratase/sh	97.05
PLN00203	519	glutamyl-tRNA reductase	97.01
PRK00045	423	hemA glutamyl-tRNA reductase; Reviewed	97.0
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	96.97
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	96.96
PRK06823	315	ornithine cyclodeaminase; Validated	96.95
PRK00048	257	dihydrodipicolinate reductase; Provisional	96.89
PRK09496	453	trkA potassium transporter peripheral membrane com	96.83
PRK13303	265	L-aspartate dehydrogenase; Provisional	96.78
PRK09496	453	trkA potassium transporter peripheral membrane com	96.78
PF13460	183	NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X	96.74
PRK07589	346	ornithine cyclodeaminase; Validated	96.73
PRK14175	286	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.66
cd07023	208	S49_Sppa_N_C Signal peptide peptidase A (SppA), a	96.66
TIGR01809	282	Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO	96.66
PRK12553	207	ATP-dependent Clp protease proteolytic subunit; Re	96.66
COG0373	414	HemA Glutamyl-tRNA reductase [Coenzyme metabolism]	96.58
PRK10669	558	putative cation:proton antiport protein; Provision	96.57
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	96.57
PRK03659	601	glutathione-regulated potassium-efflux system prot	96.56
PF03059	276	NAS: Nicotianamine synthase protein; InterPro: IPR	96.54
cd05191	86	NAD_bind_amino_acid_DH NAD(P) binding domain of am	96.54
cd07013	162	S14_ClpP Caseinolytic protease (ClpP) is an ATP-de	96.48
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	96.47
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	96.46
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	96.45
COG0673	342	MviM Predicted dehydrogenases and related proteins	96.41
PF02423	313	OCD_Mu_crystall: Ornithine cyclodeaminase/mu-cryst	96.41
COG2910	211	Putative NADH-flavin reductase [General function p	96.4
TIGR00561	511	pntA NAD(P) transhydrogenase, alpha subunit. In so	96.4
TIGR01921	324	DAP-DH diaminopimelate dehydrogenase. This model r	96.38
PRK02318	381	mannitol-1-phosphate 5-dehydrogenase; Provisional	96.34
PRK14512	197	ATP-dependent Clp protease proteolytic subunit; Pr	96.33
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	96.28
cd05295	452	MDH_like Malate dehydrogenase-like. These MDH-like	96.26
PLN02819	1042	lysine-ketoglutarate reductase/saccharopine dehydr	96.24
COG0169	283	AroE Shikimate 5-dehydrogenase [Amino acid transpo	96.23
PRK14189	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.21
PRK06719	157	precorrin-2 dehydrogenase; Validated	96.2
PRK03562	621	glutathione-regulated potassium-efflux system prot	96.16
PRK06199	379	ornithine cyclodeaminase; Validated	96.16
TIGR00036	266	dapB dihydrodipicolinate reductase.	96.15
PRK00436	343	argC N-acetyl-gamma-glutamyl-phosphate reductase;	96.12
CHL00028	200	clpP ATP-dependent Clp protease proteolytic subuni	96.1
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	96.07
PRK12409	410	D-amino acid dehydrogenase small subunit; Provisio	96.07
PF13380	116	CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5	96.06
TIGR00493	191	clpP ATP-dependent Clp protease, proteolytic subun	96.06
PF03435	386	Saccharop_dh: Saccharopine dehydrogenase ; InterPr	96.05
COG0686	371	Ald Alanine dehydrogenase [Amino acid transport an	96.04
PRK07688	339	thiamine/molybdopterin biosynthesis ThiF/MoeB-like	96.02
KOG2653|consensus	487		95.99
cd05311	226	NAD_bind_2_malic_enz NAD(P) binding domain of mali	95.97
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.92
PRK04207	341	glyceraldehyde-3-phosphate dehydrogenase; Provisio	95.92
PRK12319	256	acetyl-CoA carboxylase subunit alpha; Provisional	95.92
PRK14192	283	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.89
PRK14027	283	quinate/shikimate dehydrogenase; Provisional	95.79
CHL00198	322	accA acetyl-CoA carboxylase carboxyltransferase al	95.79
PRK14514	221	ATP-dependent Clp protease proteolytic subunit; Pr	95.77
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.75
cd07017	171	S14_ClpP_2 Caseinolytic protease (ClpP) is an ATP-	95.74
PRK12548	289	shikimate 5-dehydrogenase; Provisional	95.73
PRK12829	264	short chain dehydrogenase; Provisional	95.71
COG4091	438	Predicted homoserine dehydrogenase [Amino acid tra	95.71
PLN02968	381	Probable N-acetyl-gamma-glutamyl-phosphate reducta	95.68
cd07018	222	S49_SppA_67K_type Signal peptide peptidase A (SppA	95.64
cd01483	143	E1_enzyme_family Superfamily of activating enzymes	95.63
PLN03230	431	acetyl-coenzyme A carboxylase carboxyl transferase	95.6
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	95.59
PRK07236	386	hypothetical protein; Provisional	95.53
PLN00135	309	malate dehydrogenase	95.5
PRK12550	272	shikimate 5-dehydrogenase; Reviewed	95.48
PRK14513	201	ATP-dependent Clp protease proteolytic subunit; Pr	95.43
TIGR01850	346	argC N-acetyl-gamma-glutamyl-phosphate reductase,	95.41
PRK06153	393	hypothetical protein; Provisional	95.38
COG0300	265	DltE Short-chain dehydrogenases of various substra	95.34
PRK05868	372	hypothetical protein; Validated	95.3
KOG1683|consensus	380		95.26
PRK08300	302	acetaldehyde dehydrogenase; Validated	95.26
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	95.26
PRK10792	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.23
PRK12828	239	short chain dehydrogenase; Provisional	95.22
TIGR00513	316	accA acetyl-CoA carboxylase, carboxyl transferase,	95.22
PF13450	68	NAD_binding_8: NAD(P)-binding Rossmann-like domain	95.21
PRK12749	288	quinate/shikimate dehydrogenase; Reviewed	95.2
cd01079	197	NAD_bind_m-THF_DH NAD binding domain of methylene-	95.19
PRK14191	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.16
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	94.98
PF02882	160	THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cycl	94.96
PLN03229	762	acetyl-coenzyme A carboxylase carboxyl transferase	94.96
cd05212	140	NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding dom	94.96
PRK06194	287	hypothetical protein; Provisional	94.94
PRK12551	196	ATP-dependent Clp protease proteolytic subunit; Re	94.94
TIGR03215	285	ac_ald_DH_ac acetaldehyde dehydrogenase (acetylati	94.94
PRK09186	256	flagellin modification protein A; Provisional	94.88
PRK05597	355	molybdopterin biosynthesis protein MoeB; Validated	94.88
PF01494	356	FAD_binding_3: FAD binding domain; InterPro: IPR00	94.88
TIGR03736	244	PRTRC_ThiF PRTRC system ThiF family protein. A nov	94.87
PRK00683	418	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.86
cd00757	228	ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1	94.85
PRK00421	461	murC UDP-N-acetylmuramate--L-alanine ligase; Provi	94.81
PF01266	358	DAO: FAD dependent oxidoreductase; InterPro: IPR00	94.81
PRK00711	416	D-amino acid dehydrogenase small subunit; Validate	94.8
PRK14178	279	bifunctional 5,10-methylene-tetrahydrofolate dehyd	94.77
PRK14874	334	aspartate-semialdehyde dehydrogenase; Provisional	94.76
cd01076	227	NAD_bind_1_Glu_DH NAD(P) binding domain of glutama	94.75
PLN03075	296	nicotianamine synthase; Provisional	94.75
PRK05653	246	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	94.72
PRK05724	319	acetyl-CoA carboxylase carboxyltransferase subunit	94.7
PRK08762	376	molybdopterin biosynthesis protein MoeB; Validated	94.68
PF00574	182	CLP_protease: Clp protease; InterPro: IPR001907 In	94.66
cd05211	217	NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of	94.62
PRK13394	262	3-hydroxybutyrate dehydrogenase; Provisional	94.62
PRK06057	255	short chain dehydrogenase; Provisional	94.61
PLN00016	378	RNA-binding protein; Provisional	94.61
PRK01710	458	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.61
PRK05600	370	thiamine biosynthesis protein ThiF; Validated	94.61
PRK06847	375	hypothetical protein; Provisional	94.6
PRK11579	346	putative oxidoreductase; Provisional	94.59
PRK05854	313	short chain dehydrogenase; Provisional	94.58
PRK08163	396	salicylate hydroxylase; Provisional	94.57
COG0499	420	SAM1 S-adenosylhomocysteine hydrolase [Coenzyme me	94.56
PRK09414	445	glutamate dehydrogenase; Provisional	94.55
PRK12429	258	3-hydroxybutyrate dehydrogenase; Provisional	94.53
PRK00141	473	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.53
PRK06753	373	hypothetical protein; Provisional	94.52
PRK14176	287	bifunctional 5,10-methylene-tetrahydrofolate dehyd	94.51
PRK06270	341	homoserine dehydrogenase; Provisional	94.49
TIGR02355	240	moeB molybdopterin synthase sulfurylase MoeB. This	94.49
PRK08849	384	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	94.47
PF00899	135	ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a	94.45
PRK07231	251	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	94.43
PRK07326	237	short chain dehydrogenase; Provisional	94.42
PRK03369	488	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.42
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	94.41
PRK11259	376	solA N-methyltryptophan oxidase; Provisional	94.39
PRK07890	258	short chain dehydrogenase; Provisional	94.38
PRK07832	272	short chain dehydrogenase; Provisional	94.35
TIGR01851	310	argC_other N-acetyl-gamma-glutamyl-phosphate reduc	94.34
COG0665	387	DadA Glycine/D-amino acid oxidases (deaminating) [	94.34
PRK06138	252	short chain dehydrogenase; Provisional	94.32
PRK05786	238	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	94.31
PRK05866	293	short chain dehydrogenase; Provisional	94.3
PRK07454	241	short chain dehydrogenase; Provisional	94.3
TIGR01377	380	soxA_mon sarcosine oxidase, monomeric form. Sarcos	94.29
PRK07523	255	gluconate 5-dehydrogenase; Provisional	94.27
PLN03209	576	translocon at the inner envelope of chloroplast su	94.27
COG0740	200	ClpP Protease subunit of ATP-dependent Clp proteas	94.23
PRK07814	263	short chain dehydrogenase; Provisional	94.23
PRK02472	447	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.22
KOG0068|consensus	406		94.21
PRK06475	400	salicylate hydroxylase; Provisional	94.2
PRK08223	287	hypothetical protein; Validated	94.2
COG0654	387	UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and	94.14
PRK06196	315	oxidoreductase; Provisional	94.12
cd00755	231	YgdL_like Family of activating enzymes (E1) of ubi	94.11
cd01486	307	Apg7 Apg7 is an E1-like protein, that activates tw	94.1
COG0002	349	ArgC Acetylglutamate semialdehyde dehydrogenase [A	94.09
PRK05732	395	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	94.08
PRK08643	256	acetoin reductase; Validated	94.06
PRK06617	374	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	94.05
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	94.04
PRK07588	391	hypothetical protein; Provisional	94.03
PRK09072	263	short chain dehydrogenase; Provisional	94.03
PRK14183	281	bifunctional 5,10-methylene-tetrahydrofolate dehyd	94.03
PRK06949	258	short chain dehydrogenase; Provisional	94.02
PRK08340	259	glucose-1-dehydrogenase; Provisional	93.98
PRK08013	400	oxidoreductase; Provisional	93.97
PRK07102	243	short chain dehydrogenase; Provisional	93.93
PRK06197	306	short chain dehydrogenase; Provisional	93.92
PRK14982	340	acyl-ACP reductase; Provisional	93.91
PRK07109	334	short chain dehydrogenase; Provisional	93.91
PRK08267	260	short chain dehydrogenase; Provisional	93.91
PRK07074	257	short chain dehydrogenase; Provisional	93.9
PLN02985	514	squalene monooxygenase	93.86
PRK07831	262	short chain dehydrogenase; Provisional	93.85
PRK05867	253	short chain dehydrogenase; Provisional	93.84
COG1648	210	CysG Siroheme synthase (precorrin-2 oxidase/ferroc	93.83
PRK08945	247	putative oxoacyl-(acyl carrier protein) reductase;	93.8
PRK07825	273	short chain dehydrogenase; Provisional	93.78
PRK08213	259	gluconate 5-dehydrogenase; Provisional	93.75
PRK07774	250	short chain dehydrogenase; Provisional	93.74
PRK06180	277	short chain dehydrogenase; Provisional	93.72
PRK07067	257	sorbitol dehydrogenase; Provisional	93.71
PRK10538	248	malonic semialdehyde reductase; Provisional	93.7
PRK14177	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	93.7
PRK07677	252	short chain dehydrogenase; Provisional	93.69

>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial

Probab=100.00  E-value=9e-59  Score=483.95  Aligned_cols=358  Identities=63%  Similarity=0.989  Sum_probs=321.5

Q ss_pred             CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceec
Q psy9056           1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLV   80 (359)
Q Consensus         1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~   80 (359)
                      |.|+|||++|+++||||||+++++++|++||+++|++|++|++++|++++|..+|++|++||++++++||+++||||+++
T Consensus       117 G~a~GgG~eLALacD~ria~~~a~a~fglpEv~lGl~Pg~Ggt~rLprliG~~~A~~l~ltG~~i~a~eA~~~GLVd~vv  196 (737)
T TIGR02441       117 GSCLGGGLELALACHYRIATKDRKTLLGLPEVMLGLLPGAGGTQRLPKLTGVPAALDMMLTGKKIRADRAKKMGIVDQLV  196 (737)
T ss_pred             CEeecHHHHHHHhCCEEEEcCCCCCeEecchhhhCCCCCccHhhhHHHhhCHHHHHHHHHcCCcCCHHHHHHCCCCeEec
Confidence            68999999999999999999985579999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccccccCCCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHhhCCCCCcH
Q psy9056          81 EPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAP  160 (359)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (359)
                      |+.++.++.+.++..+++.+.+.+++.+++..+....+.+...+ +.........+.+...+...+..+.+++++++|+|
T Consensus       197 ~~~~~~~~~l~~~~~~~l~~~A~~~a~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~Ap  275 (737)
T TIGR02441       197 DPLGPGLKPAEENTIEYLEEVAVKFAQGLANGKLSINRDKGLVH-KITQYVMTNPFVRQQVYKTAEDKVMKQTKGLYPAP  275 (737)
T ss_pred             CCcccccccchhhhHHHHHHHHHHHHHHhhcccCCccccccccC-ccchhhcccchhHHHHHHHHHHHHHHhccCCCccH
Confidence            86445566677788888999999999998765544443332211 11111111224467788999999999999999999


Q ss_pred             HHHHHHHHHhhccChhhHHHHHHHHhhhhhcChhhHHHHHhHhhhhhhhhcCCCCCCCCccEEEEECCCcchHHHHHHHH
Q psy9056         161 LKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQTECKKNRLGKPQTPVKTVAVLGAGLMGAGIAHVTV  240 (359)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~s~~~~~~~~af~~k~~~~~~~~~~~~~~~~kI~IIG~G~mG~~iA~~l~  240 (359)
                      .+++++++.+...+++++++.|.+.|.+++.|++++..++.|+.+|..++.+.+.+++++++|+|||+|.||.+||..++
T Consensus       276 ~~~l~~v~~~~~~~~~~gl~~E~~~f~~l~~s~~a~al~~~f~~~~~~~~~~~~~~~~~i~~v~ViGaG~MG~gIA~~~a  355 (737)
T TIGR02441       276 LKILDVVRTGYDQGPDAGYEAESKAFGELSMTFESKALIGLFHGQTDCKKNKFGKPQRPVKTLAVLGAGLMGAGIAQVSV  355 (737)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHccCCCCCCCCCcccEEEEECCCHhHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999998877654445689999999999999999999999


Q ss_pred             HCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcCCCCCccEEEEcccCCHHHHHHHHHH
Q psy9056         241 DKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPFKNADMVIEAVFEDINIKHQVIKE  320 (359)
Q Consensus       241 ~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~aD~Vi~avp~~~~~k~~v~~~  320 (359)
                      .+|++|+++|++++.++.+..++...+++..+.+.+++...+..+++++++++++++++||+||||+||+.++|+++|++
T Consensus       356 ~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDlViEAv~E~l~~K~~vf~~  435 (737)
T TIGR02441       356 DKGLKTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPTLDYSGFKNADMVIEAVFEDLSLKHKVIKE  435 (737)
T ss_pred             hCCCcEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHHhccCCeehhhccccHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhCCCCcEEEEcCCCCcHHHHHhhcCCCCcEEeecCC
Q psy9056         321 IEAVVPPHCVVATNTSAIPITKIAAASKRPDKVRNMGRI  359 (359)
Q Consensus       321 l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~rvig~h~~  359 (359)
                      +.+++++++||+||||+++++++++.+.+|+|++|+|||
T Consensus       436 l~~~~~~~~ilasNTSsl~i~~la~~~~~p~r~ig~Hff  474 (737)
T TIGR02441       436 VEAVVPPHCIIASNTSALPIKDIAAVSSRPEKVIGMHYF  474 (737)
T ss_pred             HHhhCCCCcEEEEcCCCCCHHHHHhhcCCccceEEEecc
Confidence            999999999999999999999999999999999999997

Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).

>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB

Probab=100.00  E-value=1.6e-56  Score=466.17  Aligned_cols=340  Identities=33%  Similarity=0.475  Sum_probs=303.4

Q ss_pred             CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceec
Q psy9056           1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLV   80 (359)
Q Consensus         1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~   80 (359)
                      |.|+|||++|+++||||||+++  ++|++||+++|++|++|++++|++++|..+|++|++||++++++||+++||||+++
T Consensus       111 G~alGGGleLalacD~ria~~~--a~fglPEv~lGl~Pg~Ggt~rL~rliG~~~A~~llltG~~~~A~eA~~~GLvd~vv  188 (714)
T TIGR02437       111 GIALGGGCECVLATDFRIADDT--AKIGLPETKLGIMPGFGGTVRLPRVIGADNALEWIASGKENRAEDALKVGAVDAVV  188 (714)
T ss_pred             CeeecHHHHHHHhCCEEEEeCC--CEEecchhhcCCCCCccHHHHHHHHhCHHHHHHHHHcCCcCCHHHHHHCCCCcEee
Confidence            6899999999999999999988  99999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccccccCCCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHhhCCCCCcH
Q psy9056          81 EPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAP  160 (359)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (359)
                      |+             +++.+.+.++++++..........++.-   ... +......+...+......+.++..+++|+|
T Consensus       189 ~~-------------~~l~~~a~~~a~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~pap  251 (714)
T TIGR02437       189 TA-------------DKLGAAALQLLKDAINGKLDWKAKRQPK---LEP-LKLSKIEAMMSFTTAKGMVAQVAGPHYPAP  251 (714)
T ss_pred             Ch-------------hHHHHHHHHHHHHHhhcCCcccccCCCC---ccc-ccccchHHHHHHHHHHHHHHHhhcCCCCCH
Confidence            98             8899999999998766432222111100   000 000112333445666676778899999999


Q ss_pred             HHHHHHHHHhhccChhhHHHHHHHHhhhhhcChhhHHHHHhHhhhhhhhhcCCC--CCCCCccEEEEECCCcchHHHHHH
Q psy9056         161 LKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQTECKKNRLG--KPQTPVKTVAVLGAGLMGAGIAHV  238 (359)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~s~~~~~~~~af~~k~~~~~~~~~--~~~~~~~kI~IIG~G~mG~~iA~~  238 (359)
                      ..+++.++.+...+++++++.|.+.|.+++.|++++++++.|+.+|..++.+..  ..++++++|+|||+|.||.+||..
T Consensus       252 ~~~~~~v~~~~~~~~~~gl~~E~~~f~~l~~s~~a~~l~~~ff~~r~~~~~~~~~~~~~~~i~~v~ViGaG~mG~gIA~~  331 (714)
T TIGR02437       252 MTAVKTIEKAARFGRDKALEIEAKGFVKLAKTSEAKALIGLFLNDQYVKGKAKKADKIAKDVKQAAVLGAGIMGGGIAYQ  331 (714)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHhhhHhhcCCCCCCCCCccccceEEEECCchHHHHHHHH
Confidence            999999999999999999999999999999999999999999999988765422  345799999999999999999999


Q ss_pred             HHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcCCCCCccEEEEcccCCHHHHHHHH
Q psy9056         239 TVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPFKNADMVIEAVFEDINIKHQVI  318 (359)
Q Consensus       239 l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~aD~Vi~avp~~~~~k~~v~  318 (359)
                      ++.+|++|+++|++++.++.+..++...++...+.+.+++...+..+++++++++++.+++||+||||+||+.++|+++|
T Consensus       332 ~a~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDlViEav~E~l~~K~~vf  411 (714)
T TIGR02437       332 SASKGTPIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPTLSYAGFDNVDIVVEAVVENPKVKAAVL  411 (714)
T ss_pred             HHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCHHHhcCCCEEEEcCcccHHHHHHHH
Confidence            99999999999999999999999999999999999999999989999999999999889999999999999999999999


Q ss_pred             HHHHHhCCCCcEEEEcCCCCcHHHHHhhcCCCCcEEeecCC
Q psy9056         319 KEIEAVVPPHCVVATNTSAIPITKIAAASKRPDKVRNMGRI  359 (359)
Q Consensus       319 ~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~rvig~h~~  359 (359)
                      +++.+++++++||+||||+++++++++.+.+|+|++|+|||
T Consensus       412 ~~l~~~~~~~~ilasnTS~l~i~~ia~~~~~p~r~ig~Hff  452 (714)
T TIGR02437       412 AEVEQHVREDAILASNTSTISISLLAKALKRPENFCGMHFF  452 (714)
T ss_pred             HHHHhhCCCCcEEEECCCCCCHHHHHhhcCCcccEEEEecC
Confidence            99999999999999999999999999999999999999997

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.

>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=100.00  E-value=1.9e-56  Score=466.50  Aligned_cols=338  Identities=36%  Similarity=0.530  Sum_probs=302.4

Q ss_pred             CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceec
Q psy9056           1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLV   80 (359)
Q Consensus         1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~   80 (359)
                      |.|+|||++|+++|||||++++  ++|++||+++|++|++|++++|++++|..+|++|++||++++|+||+++||||+++
T Consensus       111 G~a~GgG~~LAlacD~ria~~~--a~f~~pe~~lGl~p~~g~~~~L~rlvG~~~A~~llltG~~~~A~eA~~~GLv~~vv  188 (715)
T PRK11730        111 GYALGGGCECVLATDYRVASPD--ARIGLPETKLGIMPGFGGTVRLPRLIGADNALEWIAAGKDVRAEDALKVGAVDAVV  188 (715)
T ss_pred             CEeehHHHHHHHhCCEEEEcCC--CEEeCchhhcCCCCCchHHHHHHHhcCHHHHHHHHHcCCcCCHHHHHHCCCCeEec
Confidence            6899999999999999999988  99999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccccccCCC--CCCchhhhhhhhhhhhhhHHHHHHHHHHHHhhCCCCC
Q psy9056          81 EPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKP--MIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYP  158 (359)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~k~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (359)
                      |+             +++.+.+.+++++++..+......+.  ..|..+      ....+...+...+..+.++..+++|
T Consensus       189 ~~-------------~~l~~~a~~~a~~la~~~~~~~~~~~~~~~p~a~------~~~~~~~~~~~~k~~~~~~~~~~~p  249 (715)
T PRK11730        189 AP-------------EKLQEAALALLKQAIAGKLDWKARRQPKLEPLKL------SKIEAMMSFTTAKGMVAQKAGKHYP  249 (715)
T ss_pred             CH-------------HHHHHHHHHHHHHHhhcCCccccccCcccccccc------cchhHHHHHHHHHHHHHHhhccCCc
Confidence            98             88999999999999987532111110  000000      0122233445555666777899999


Q ss_pred             cHHHHHHHHHHhhccChhhHHHHHHHHhhhhhcChhhHHHHHhHhhhhhhhhcCCC--CCCCCccEEEEECCCcchHHHH
Q psy9056         159 APLKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQTECKKNRLG--KPQTPVKTVAVLGAGLMGAGIA  236 (359)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~s~~~~~~~~af~~k~~~~~~~~~--~~~~~~~kI~IIG~G~mG~~iA  236 (359)
                      ++..+++.++.+...+++++++.|.+.+..++.|+|+++++++|+++|..++.+..  .+...|++|+|||+|.||.+||
T Consensus       250 a~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~d~~egi~aF~~~~~~~~~~~~~~~~~~~i~~v~ViGaG~mG~gIA  329 (715)
T PRK11730        250 APMTAVKTIEAAAGLGRDEALELEAKGFVKLAKTNVARALVGIFLNDQYVKGKAKKLAKDAKPVKQAAVLGAGIMGGGIA  329 (715)
T ss_pred             cHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCCCCCCCCccccceEEEECCchhHHHHH
Confidence            99999999999988999999999999999999999999999999999988765422  3457899999999999999999


Q ss_pred             HHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcCCCCCccEEEEcccCCHHHHHH
Q psy9056         237 HVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPFKNADMVIEAVFEDINIKHQ  316 (359)
Q Consensus       237 ~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~aD~Vi~avp~~~~~k~~  316 (359)
                      ..++.+|++|+++|++++.++.+...+...+++..+.+.+++......+++++++++++.+++||+||||+||+.++|++
T Consensus       330 ~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDlViEav~E~l~~K~~  409 (715)
T PRK11730        330 YQSASKGVPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPTLDYAGFERVDVVVEAVVENPKVKAA  409 (715)
T ss_pred             HHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCHHHhcCCCEEEecccCcHHHHHH
Confidence            99999999999999999999999999999999999999999988888999999999998899999999999999999999


Q ss_pred             HHHHHHHhCCCCcEEEEcCCCCcHHHHHhhcCCCCcEEeecCC
Q psy9056         317 VIKEIEAVVPPHCVVATNTSAIPITKIAAASKRPDKVRNMGRI  359 (359)
Q Consensus       317 v~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~rvig~h~~  359 (359)
                      +|+++.+++++++||+||||+++++++++.+.+|+|++|+|||
T Consensus       410 vf~~l~~~~~~~~ilasNTSsl~i~~la~~~~~p~r~~g~Hff  452 (715)
T PRK11730        410 VLAEVEQKVREDTILASNTSTISISLLAKALKRPENFCGMHFF  452 (715)
T ss_pred             HHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCCccEEEEecC
Confidence            9999999999999999999999999999999999999999997

>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=100.00  E-value=4.1e-56  Score=463.84  Aligned_cols=337  Identities=46%  Similarity=0.690  Sum_probs=303.5

Q ss_pred             CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceec
Q psy9056           1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLV   80 (359)
Q Consensus         1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~   80 (359)
                      |+|+|||++|+++|||||++++++++|++||+++|++|++|++++|++++|..+|++|++||++++++||+++||||+++
T Consensus       110 G~a~GgG~~LalacD~ria~~~a~a~fg~pe~~lGl~p~~gg~~~L~r~vG~~~A~~llltG~~i~a~eA~~~GLv~~vv  189 (708)
T PRK11154        110 GACLGGGLELALACHYRVCTDDPKTVLGLPEVQLGLLPGSGGTQRLPRLIGVSTALDMILTGKQLRAKQALKLGLVDDVV  189 (708)
T ss_pred             CeeechHHHHHHhCCEEEEeCCCCceEeCccccCCCCCCccHHhHHHhhcCHHHHHHHHHhCCcCCHHHHHHCCCCcEec
Confidence            68999999999999999999874569999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccccccCCCCCCchhhh-hhhhhhhhhhHHHHHHHHHHHHhhCCCCCc
Q psy9056          81 EPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLD-VALKFEFVRNQIFGKAKEKVMKMSGGLYPA  159 (359)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~k~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (359)
                      |+             +++.+.+.++++++......    .+     ... .+...+..+...+......+.++++|++++
T Consensus       190 ~~-------------~~l~~~a~~~A~~~~~~~~~----~~-----~~~~~~~~~p~~~~~~~~~~~~~~~~~~~g~~~A  247 (708)
T PRK11154        190 PH-------------SILLEVAVELAKKGKPARRP----LP-----VRERLLEGNPLGRALLFKQARKKTLAKTQGNYPA  247 (708)
T ss_pred             Ch-------------HHHHHHHHHHHHhcCCccCc----CC-----chhhhcccCchhHHHHHHHHHHHHHHhcccCChH
Confidence            98             88999999999884211110    00     000 011123456778888899999999999999


Q ss_pred             HHHHHHHHHHhhccChhhHHHHHHHHhhhhhcChhhHHHHHhHhhhhhhhhcCCC-CCCCCccEEEEECCCcchHHHHHH
Q psy9056         160 PLKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQTECKKNRLG-KPQTPVKTVAVLGAGLMGAGIAHV  238 (359)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~s~~~~~~~~af~~k~~~~~~~~~-~~~~~~~kI~IIG~G~mG~~iA~~  238 (359)
                      +..++++++.+...++++++..|.+.|..++.|+|+++++++|+.+|..++.+.. .++.++++|+|||+|.||.+||..
T Consensus       248 ~~~~k~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~aF~~~~~~~~~~~~~~~~~~i~~v~ViGaG~mG~giA~~  327 (708)
T PRK11154        248 PERILDVVRTGLEKGMSSGYEAEARAFGELAMTPESAALRSIFFATTEMKKDTGSDAKPRPVNKVGVLGGGLMGGGIAYV  327 (708)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCCCCCCCCCcccEEEEECCchhhHHHHHH
Confidence            9999999999999999999999999999999999999999999999887664331 244789999999999999999999


Q ss_pred             HH-HCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcCCCCCccEEEEcccCCHHHHHHH
Q psy9056         239 TV-DKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPFKNADMVIEAVFEDINIKHQV  317 (359)
Q Consensus       239 l~-~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~aD~Vi~avp~~~~~k~~v  317 (359)
                      ++ .+|++|+++|++++.++.+...++..+++..+.+.+++......+++|+++++++++++||+||||+||+.++|+++
T Consensus       328 ~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~aDlViEav~E~~~~K~~v  407 (708)
T PRK11154        328 TATKAGLPVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGTTDYRGFKHADVVIEAVFEDLALKQQM  407 (708)
T ss_pred             HHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEeCChHHhccCCEEeecccccHHHHHHH
Confidence            99 88999999999999999999999999999999999999888888899999999988999999999999999999999


Q ss_pred             HHHHHHhCCCCcEEEEcCCCCcHHHHHhhcCCCCcEEeecCC
Q psy9056         318 IKEIEAVVPPHCVVATNTSAIPITKIAAASKRPDKVRNMGRI  359 (359)
Q Consensus       318 ~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~rvig~h~~  359 (359)
                      |+++.+++++++||+||||+++++++++.+.+|+|++|+|||
T Consensus       408 ~~~le~~~~~~~ilasnTS~l~i~~la~~~~~p~r~ig~Hff  449 (708)
T PRK11154        408 VAEVEQNCAPHTIFASNTSSLPIGQIAAAAARPEQVIGLHYF  449 (708)
T ss_pred             HHHHHhhCCCCcEEEECCCCCCHHHHHHhcCcccceEEEecC
Confidence            999999999999999999999999999999999999999997

>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ

Probab=100.00  E-value=4.3e-56  Score=462.78  Aligned_cols=337  Identities=43%  Similarity=0.655  Sum_probs=301.0

Q ss_pred             CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceec
Q psy9056           1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLV   80 (359)
Q Consensus         1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~   80 (359)
                      |.|+|||++|+++||||||+++++++|++||+++|++|++|++++|++++|..++++|++||++++++||+++||||+++
T Consensus       105 G~a~GgG~~LaLacD~ria~~~~~a~fg~pev~lGl~p~~g~~~~L~r~vG~~~A~~llltG~~~~a~eA~~~GLV~~vv  184 (699)
T TIGR02440       105 GACLGGGLELALACHSRVCSDDDKTVLGLPEVQLGLLPGSGGTQRLPRLIGVSTALDMILTGKQLRAKQALKLGLVDDVV  184 (699)
T ss_pred             CEeecHHHHHHHhCCEEEEcCCCCcEEechhhcccCCCCccHHHHHHHhcCHHHHHHHHHcCCcCCHHHHHhCCCCcEec
Confidence            68999999999999999999875689999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccccccCCCCCCchhh-hhhhhhhhhhhHHHHHHHHHHHHhhCCCCCc
Q psy9056          81 EPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVL-DVALKFEFVRNQIFGKAKEKVMKMSGGLYPA  159 (359)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~k~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (359)
                      |+             +++.+.+.+++++.  .+.   + ++.   ... ....+.+......+......+.+++.+++|+
T Consensus       185 ~~-------------~~l~~~a~~~A~~~--~~~---~-~~~---~~~~~~~~~~~~a~~~~~~~~~k~~~~~~~~~~~a  242 (699)
T TIGR02440       185 PQ-------------SILLDTAVEMALKG--KPI---R-KPL---SLQERLLEGTPLGRALLFDQAAKKTAKKTQGNYPA  242 (699)
T ss_pred             Ch-------------hHHHHHHHHHHHhC--CCC---C-CCc---cchhhhcccCchhHHHHHHHHHHHHHHhcccCChh
Confidence            98             88999999999761  111   0 000   001 1112223445566677788888889999999


Q ss_pred             HHHHHHHHHHhhccChhhHHHHHHHHhhhhhcChhhHHHHHhHhhhhhhhhcCCC-CCCCCccEEEEECCCcchHHHHHH
Q psy9056         160 PLKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQTECKKNRLG-KPQTPVKTVAVLGAGLMGAGIAHV  238 (359)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~s~~~~~~~~af~~k~~~~~~~~~-~~~~~~~kI~IIG~G~mG~~iA~~  238 (359)
                      +..+++.++.+...+++++++.|.+.|..++.|+|+++++++|+.++..++.+.. ....++++|+|||+|.||.+||..
T Consensus       243 ~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~~f~~~~~~~~~~~~~~~~~~i~~v~ViGaG~mG~~iA~~  322 (699)
T TIGR02440       243 AERILDVVRQGLAQGMQKGLDAEARAFGELVMTPESAALRSIFFATTEMKKETGSDATPAKIKKVGILGGGLMGGGIASV  322 (699)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCCCCCcccccEEEEECCcHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999887664332 234688999999999999999999


Q ss_pred             HH-HCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcCCCCCccEEEEcccCCHHHHHHH
Q psy9056         239 TV-DKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPFKNADMVIEAVFEDINIKHQV  317 (359)
Q Consensus       239 l~-~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~aD~Vi~avp~~~~~k~~v  317 (359)
                      ++ ++|++|+++|++++.++.+..++...+++..+.+.+++...+..+.+|+++++++.+++||+||||+||+.++|+++
T Consensus       323 ~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~adlViEav~E~l~~K~~v  402 (699)
T TIGR02440       323 TATKAGIPVRIKDINPQGINNALKYAWKLLDKGVKRRHMTPAERDNQMALITGTTDYRGFKDVDIVIEAVFEDLALKHQM  402 (699)
T ss_pred             HHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeEEeCChHHhccCCEEEEeccccHHHHHHH
Confidence            98 58999999999999999999999999999999999999888888999999999999999999999999999999999


Q ss_pred             HHHHHHhCCCCcEEEEcCCCCcHHHHHhhcCCCCcEEeecCC
Q psy9056         318 IKEIEAVVPPHCVVATNTSAIPITKIAAASKRPDKVRNMGRI  359 (359)
Q Consensus       318 ~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~rvig~h~~  359 (359)
                      |++|.+++++++||+||||+++++++++.+.+|+|++|+|||
T Consensus       403 ~~~l~~~~~~~~ilasnTS~l~i~~la~~~~~p~r~~g~Hff  444 (699)
T TIGR02440       403 VKDIEQECAAHTIFASNTSSLPIGQIAAAASRPENVIGLHYF  444 (699)
T ss_pred             HHHHHhhCCCCcEEEeCCCCCCHHHHHHhcCCcccEEEEecC
Confidence            999999999999999999999999999999999999999997

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.

>KOG1680|consensus

Probab=99.97  E-value=1.1e-30  Score=235.01  Aligned_cols=154  Identities=29%  Similarity=0.380  Sum_probs=144.4

Q ss_pred             CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceec
Q psy9056           1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLV   80 (359)
Q Consensus         1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~   80 (359)
                      |||+|||++|+++||+|||+++  ++|++|+.++|++|++|||++|++.+|..+|++|++||++++++||+++||||+|+
T Consensus       136 G~AlgGG~ELalmCDirva~~~--Akfg~~~~~~Gi~p~~GGT~rl~r~vG~s~Ale~~ltg~~~~AqeA~~~GlVn~Vv  213 (290)
T KOG1680|consen  136 GFALGGGLELALMCDIRVAGEG--AKFGFFEIRMGIIPSWGGTQRLPRIVGKSRALEMILTGRRLGAQEAKKIGLVNKVV  213 (290)
T ss_pred             ceeeccchhhhhhcceEeccCC--CeecccccccCCccCCCchhhHHHHhChHHHHHHHHhcCcccHHHHHhCCceeEee
Confidence            7999999999999999999998  99999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccccccCCCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHhhCCCCCcH
Q psy9056          81 EPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAP  160 (359)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (359)
                      |.             ++++.+|.+++++|++.|+.+.                                           
T Consensus       214 p~-------------~~~l~eAv~l~~~Ia~~~~~~v-------------------------------------------  237 (290)
T KOG1680|consen  214 PS-------------GDALGEAVKLAEQIAKNSPLVV-------------------------------------------  237 (290)
T ss_pred             cc-------------hhHHHHHHHHHHHHHhCCHHHH-------------------------------------------
Confidence            99             8899999999999999987322                                           


Q ss_pred             HHHHHHHHHhhccChhhHHHHHHHHhhhhhcChhhHHHHHhHhhhhhhhhcC
Q psy9056         161 LKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQTECKKNR  212 (359)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~s~~~~~~~~af~~k~~~~~~~  212 (359)
                      ...+++++.+.+.++.+++..|.+.|...+..+|.+|||.+|-+||+++|.+
T Consensus       238 ~~~K~svn~~~e~~l~e~l~~e~~~~~s~~~~~d~~Eg~~~f~~kr~~~~~k  289 (290)
T KOG1680|consen  238 RADKESVNAAYETTLFEGLELERDLFGSTFATEDRLEGMTAFAEKRKPKFSK  289 (290)
T ss_pred             HHHHHHHHHHhhccHHHHHHhhhhhhhhhhhhHHHHHHHHHhcccCCccccc
Confidence            2456777888889999999999999999999999999999999999998854

>PRK08150 enoyl-CoA hydratase; Provisional

Probab=99.96  E-value=1.7e-29  Score=234.13  Aligned_cols=154  Identities=22%  Similarity=0.310  Sum_probs=141.5

Q ss_pred             CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceec
Q psy9056           1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLV   80 (359)
Q Consensus         1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~   80 (359)
                      |+|+|||++|+++|||||++++  ++|++||+++|++|++|++++|++++|..++++|++||++++++||+++||||+++
T Consensus       101 G~a~GgG~~lalacD~~ia~~~--a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~a~~l~ltg~~~~a~eA~~~Glv~~vv  178 (255)
T PRK08150        101 GAVVGGGLELASAAHIRVADES--TYFALPEGQRGIFVGGGGSVRVPRLIGVARMTDMMLTGRVYDAQEGERLGLAQYLV  178 (255)
T ss_pred             CEEEcHHHHHHHhCCEEEEeCC--CEEeccccccCCCCCccHHHHHHHHhCHHHHHHHHHcCCcCCHHHHHHcCCccEee
Confidence            6899999999999999999988  99999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccccccCCCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHhhCCCCCcH
Q psy9056          81 EPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAP  160 (359)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (359)
                      |+             +++.+.+.+++++++..++..                                           .
T Consensus       179 ~~-------------~~l~~~a~~~a~~la~~~~~a-------------------------------------------~  202 (255)
T PRK08150        179 PA-------------GEALDKAMELARRIAQNAPLT-------------------------------------------N  202 (255)
T ss_pred             Cc-------------hHHHHHHHHHHHHHHhCCHHH-------------------------------------------H
Confidence            98             889999999999999987732                                           2


Q ss_pred             HHHHHHHHHhhccChhhHHHHHHHHhhhhhcChhhHHHHHhHhhhhhhhhcC
Q psy9056         161 LKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQTECKKNR  212 (359)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~s~~~~~~~~af~~k~~~~~~~  212 (359)
                      ..+|+.++.....+++++++.|.+.+..++.|+|+++++.+|++||+|+|++
T Consensus       203 ~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~s~d~~eg~~af~~kr~p~~~~  254 (255)
T PRK08150        203 FAVLNALPRIADMSADDGLFVESLMAAVAQSAPEAKERLRAFLEKKAAKVKP  254 (255)
T ss_pred             HHHHHHHHHhccCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHhccCCCCCCC
Confidence            2456677777677889999999999999999999999999999999998853

>PRK05862 enoyl-CoA hydratase; Provisional

Probab=99.96  E-value=1.8e-29  Score=234.31  Aligned_cols=153  Identities=28%  Similarity=0.407  Sum_probs=141.9

Q ss_pred             CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceec
Q psy9056           1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLV   80 (359)
Q Consensus         1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~   80 (359)
                      |.|+|||++|+++||+||++++  ++|++||+++|++|++|++++|++++|..++++|+++|++++++||+++||||+++
T Consensus       103 G~a~GgG~~lalacD~~ia~~~--a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv  180 (257)
T PRK05862        103 GYALGGGCELAMMCDIIIAADT--AKFGQPEIKLGVLPGMGGSQRLTRAVGKAKAMDLCLTGRMMDAAEAERAGLVSRVV  180 (257)
T ss_pred             cEEeHHHHHHHHHCCEEEEeCC--CEEeCchhccCcCCCccHHHHHHHHhCHHHHHHHHHhCCccCHHHHHHcCCCCEee
Confidence            6899999999999999999988  99999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccccccCCCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHhhCCCCCcH
Q psy9056          81 EPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAP  160 (359)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (359)
                      |+             +++.+.+.++++++++.++.                                           +.
T Consensus       181 ~~-------------~~l~~~a~~~a~~l~~~~~~-------------------------------------------a~  204 (257)
T PRK05862        181 PA-------------DKLLDEALAAATTIASFSLP-------------------------------------------AV  204 (257)
T ss_pred             CH-------------hHHHHHHHHHHHHHHhCCHH-------------------------------------------HH
Confidence            98             88999999999999987762                                           33


Q ss_pred             HHHHHHHHHhhccChhhHHHHHHHHhhhhhcChhhHHHHHhHhhhhhhhhc
Q psy9056         161 LKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQTECKKN  211 (359)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~s~~~~~~~~af~~k~~~~~~  211 (359)
                      ..+|+.++.....+++++++.|.+.+..++.|+|+++++++|++||+|++.
T Consensus       205 ~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~~~~e~i~af~~kr~p~~~  255 (257)
T PRK05862        205 MMAKEAVNRAYETTLAEGLLFERRLFHSLFATEDQKEGMAAFVEKRKPVFK  255 (257)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcChhHHHHHHHHhccCCCCCC
Confidence            356777787777889999999999999999999999999999999998763

>PLN02600 enoyl-CoA hydratase

Probab=99.96  E-value=4.7e-29  Score=230.75  Aligned_cols=153  Identities=27%  Similarity=0.363  Sum_probs=141.6

Q ss_pred             CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceec
Q psy9056           1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLV   80 (359)
Q Consensus         1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~   80 (359)
                      |.|+|||++|+++|||||++++  ++|++||+++|++|++|++++|++++|..++++|++||++++++||+++||||+++
T Consensus        97 G~a~GgG~~lala~D~~ia~~~--a~f~~pe~~~Gl~p~~g~~~~l~~~~G~~~a~~l~ltg~~~~a~eA~~~Glv~~vv  174 (251)
T PLN02600         97 GAALGGGLELALSCDLRICGEE--AVFGLPETGLAIIPGAGGTQRLPRLVGRSRAKELIFTGRRIGAREAASMGLVNYCV  174 (251)
T ss_pred             CeecchhHHHHHhCCEEEeeCC--CEEeCcccccCcCCCchHHHHHHHHhCHHHHHHHHHhCCccCHHHHHHcCCCcEee
Confidence            6899999999999999999998  99999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccccccCCCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHhhCCCCCcH
Q psy9056          81 EPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAP  160 (359)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (359)
                      |+             +++++.+.++++++++.|+..                                           .
T Consensus       175 ~~-------------~~~~~~a~~~a~~la~~~p~a-------------------------------------------~  198 (251)
T PLN02600        175 PA-------------GEAYEKALELAQEINQKGPLA-------------------------------------------I  198 (251)
T ss_pred             Ch-------------hHHHHHHHHHHHHHHhCCHHH-------------------------------------------H
Confidence            98             889999999999999988732                                           2


Q ss_pred             HHHHHHHHHhhccChhhHHHHHHHHhhhhhcChhhHHHHHhHhhhhhhhhc
Q psy9056         161 LKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQTECKKN  211 (359)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~s~~~~~~~~af~~k~~~~~~  211 (359)
                      ..+|+.++.....++++.++.|.+.+..++.++|++|++++|++||+|++.
T Consensus       199 ~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~ekr~p~~~  249 (251)
T PLN02600        199 KMAKKAINEGSEVDMASGLEIEEECYEQVLKTKDRLEGLAAFAEKRKPVYT  249 (251)
T ss_pred             HHHHHHHHHHccCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHhcCCCCCCC
Confidence            256677777777889999999999999999999999999999999998763

>PRK08252 enoyl-CoA hydratase; Provisional

Probab=99.96  E-value=3.7e-29  Score=231.86  Aligned_cols=153  Identities=24%  Similarity=0.348  Sum_probs=140.6

Q ss_pred             CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceec
Q psy9056           1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLV   80 (359)
Q Consensus         1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~   80 (359)
                      |.|+|||++|+++|||||++++  ++|++||+++|++|++|++++|++++|..++++|+++|++++++||+++||||+++
T Consensus       100 G~a~GgG~~lalacD~~ia~~~--a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~~l~l~g~~~~a~eA~~~Glv~~vv  177 (254)
T PRK08252        100 GYALAGGFELALACDLIVAARD--AKFGLPEVKRGLVAAGGGLLRLPRRIPYHIAMELALTGDMLTAERAHELGLVNRLT  177 (254)
T ss_pred             CEEehHHHHHHHhCCEEEEeCC--CEEeCchhhcCCCCCchHHHHHHHHcCHHHHHHHHHcCCccCHHHHHHcCCcceec
Confidence            6799999999999999999988  99999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccccccCCCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHhhCCCCCcH
Q psy9056          81 EPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAP  160 (359)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (359)
                      |+             +++.+.+.+++++++..|+.                                           +.
T Consensus       178 ~~-------------~~l~~~a~~~a~~l~~~~~~-------------------------------------------a~  201 (254)
T PRK08252        178 EP-------------GQALDAALELAERIAANGPL-------------------------------------------AV  201 (254)
T ss_pred             Cc-------------chHHHHHHHHHHHHHhCCHH-------------------------------------------HH
Confidence            98             88999999999999988763                                           22


Q ss_pred             HHHHHHHHHhhccChhhHHHHHHHHhhhhhcChhhHHHHHhHhhhhhhhhc
Q psy9056         161 LKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQTECKKN  211 (359)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~s~~~~~~~~af~~k~~~~~~  211 (359)
                      ..+|++++.....+++++++.|.+.+..++.++|+++++.+|++||+|+|.
T Consensus       202 ~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~~~~eg~~af~~kr~p~~~  252 (254)
T PRK08252        202 AASKRIVVESGDWSEDEMFARQRELIAPVFTSADAKEGATAFAEKRAPVWT  252 (254)
T ss_pred             HHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCchHHHHHHHHhcCCCCCCC
Confidence            356677777767788999999999999999999999999999999988763

>PRK05980 enoyl-CoA hydratase; Provisional

Probab=99.96  E-value=3.6e-29  Score=232.76  Aligned_cols=152  Identities=26%  Similarity=0.354  Sum_probs=140.2

Q ss_pred             CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceec
Q psy9056           1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLV   80 (359)
Q Consensus         1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~   80 (359)
                      |+|+|||++|+++|||||++++  ++|++||+++|++|++|++++|++++|..++++|+++|++++++||+++||||+++
T Consensus       109 G~a~GgG~~lal~cD~ria~~~--a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv  186 (260)
T PRK05980        109 GLAFGGGCEITEAVHLAIASER--ALFAKPEIRLGMPPTFGGTQRLPRLAGRKRALELLLTGDAFSAERALEIGLVNAVV  186 (260)
T ss_pred             CEEEhhhhHHhHhCCEEEecCC--CEecCcccccCCCCCchHhhHHHhhcCHHHHHHHHHcCCccCHHHHHHcCCCCccc
Confidence            6899999999999999999988  99999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccccccCCCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHhhCCCCCcH
Q psy9056          81 EPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAP  160 (359)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (359)
                      |+             +++++.+.++++++++.++.                                           +.
T Consensus       187 ~~-------------~~l~~~a~~~a~~la~~~p~-------------------------------------------a~  210 (260)
T PRK05980        187 PH-------------EELLPAARALARRIIRHSPV-------------------------------------------AV  210 (260)
T ss_pred             CH-------------HHHHHHHHHHHHHHHhCCHH-------------------------------------------HH
Confidence            98             88999999999999988762                                           22


Q ss_pred             HHHHHHHHHhhccChhhHHHHHHHHhhhhhcChhhHHHHHhHhhhhhhhh
Q psy9056         161 LKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQTECKK  210 (359)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~s~~~~~~~~af~~k~~~~~  210 (359)
                      ..+|+.++.....+++++++.|.+.+..++.++|+++++.+|++||+|++
T Consensus       211 ~~~K~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr~p~~  260 (260)
T PRK05980        211 AAILTAVTRGLNLSIAEGLLIESEQFARMAGSADLREGLAAWIERRRPAY  260 (260)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcChhHHHHHHHHhccCCCCC
Confidence            34566777777788999999999999999999999999999999998764

>TIGR02280 PaaB1 phenylacetate degradation probable enoyl-CoA hydratase paaB

Probab=99.96  E-value=5.4e-29  Score=231.05  Aligned_cols=153  Identities=20%  Similarity=0.241  Sum_probs=141.7

Q ss_pred             CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceec
Q psy9056           1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLV   80 (359)
Q Consensus         1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~   80 (359)
                      |+|+|||++|+++||||||+++  ++|++||+++|++|++|++++|++++|..++++|+++|++++++||+++||||+++
T Consensus       102 G~a~GgG~~lala~D~ria~~~--a~f~~pe~~lG~~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv  179 (256)
T TIGR02280       102 GVAAGAGANLALACDIVLAAES--ARFIQAFAKIGLIPDSGGTWSLPRLVGRARAMGLAMLGEKLDARTAASWGLIWQVV  179 (256)
T ss_pred             CeeehHHHHHHHhCCEEEecCC--CEEeChhhhcCCCCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHcCCcceee
Confidence            6899999999999999999998  99999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccccccCCCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHhhCCCCCcH
Q psy9056          81 EPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAP  160 (359)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (359)
                      |+             +++.+.+.++++++++.|+..                                           .
T Consensus       180 ~~-------------~~l~~~a~~~a~~la~~~~~~-------------------------------------------~  203 (256)
T TIGR02280       180 DD-------------AALMDEAQALAVHLAAQPTRG-------------------------------------------L  203 (256)
T ss_pred             Ch-------------HHHHHHHHHHHHHHHhCCHHH-------------------------------------------H
Confidence            98             889999999999999988632                                           2


Q ss_pred             HHHHHHHHHhhccChhhHHHHHHHHhhhhhcChhhHHHHHhHhhhhhhhhc
Q psy9056         161 LKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQTECKKN  211 (359)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~s~~~~~~~~af~~k~~~~~~  211 (359)
                      ..+|+.++.....+++++++.|.+.+..++.|+|+++++++|++||+|++.
T Consensus       204 ~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~~kr~p~~~  254 (256)
T TIGR02280       204 ALTKRAIQAAATNSLDTQLDLERDLQRELGRSADYAEGVTAFLDKRNPQFT  254 (256)
T ss_pred             HHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcChhHHHHHHHHHcCCCCCCC
Confidence            356677777777889999999999999999999999999999999998873

This family of proteins are found within apparent operons for the degradation of phenylacetic acid. These proteins contain the enoyl-CoA hydratase domain as detected by pfam00378. This activity is consistent with current hypotheses for the degradation pathway which involve the ligation of phenylacetate with coenzyme A (paaF), hydroxylation (paaGHIJK), ring-opening (paaN) and degradation of the resulting fatty acid-like compound to a Krebs cycle intermediate (paaABCDE).

>PRK09076 enoyl-CoA hydratase; Provisional

Probab=99.96  E-value=5.7e-29  Score=231.14  Aligned_cols=153  Identities=27%  Similarity=0.336  Sum_probs=140.9

Q ss_pred             CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceec
Q psy9056           1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLV   80 (359)
Q Consensus         1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~   80 (359)
                      |.|+|||++|+++||+||++++  ++|++||+++|++|++|++++|++++|..++++|+++|++++++||+++||||+++
T Consensus       104 G~a~GgG~~lalacD~~ia~~~--a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv  181 (258)
T PRK09076        104 GYAMGGGLECALACDIRIAEEQ--AQMALPEASVGLLPCAGGTQNLPWLVGEGWAKRMILCGERVDAATALRIGLVEEVV  181 (258)
T ss_pred             CEEecHHHHHHHhCCEEEecCC--CEeeCcccccCCCCCccHHHHHHHHhCHHHHHHHHHcCCcCCHHHHHHCCCCceec
Confidence            6899999999999999999988  99999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccccccCCCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHhhCCCCCcH
Q psy9056          81 EPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAP  160 (359)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (359)
                      |+             +++.+.+.+++++++..++..                                           .
T Consensus       182 ~~-------------~~l~~~a~~~a~~l~~~~~~a-------------------------------------------~  205 (258)
T PRK09076        182 EK-------------GEAREAALALAQKVANQSPSA-------------------------------------------V  205 (258)
T ss_pred             Cc-------------hhHHHHHHHHHHHHHhCCHHH-------------------------------------------H
Confidence            98             889999999999999987732                                           2


Q ss_pred             HHHHHHHHHhhccChhhHHHHHHHHhhhhhcChhhHHHHHhHhhhhhhhhc
Q psy9056         161 LKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQTECKKN  211 (359)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~s~~~~~~~~af~~k~~~~~~  211 (359)
                      ..+|++++.....++++.++.|.+.+..++.++|++|++++|++||+|++.
T Consensus       206 ~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~eg~~af~~kr~p~~~  256 (258)
T PRK09076        206 AACKTLIQAARNGPRAAALALERELFVDLFDTEDQREGVNAFLEKRAPQWK  256 (258)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCchHHHHHHHHhcCCCCCCC
Confidence            346667777767789999999999999999999999999999999998763

>PRK07658 enoyl-CoA hydratase; Provisional

Probab=99.96  E-value=5.4e-29  Score=231.25  Aligned_cols=153  Identities=27%  Similarity=0.395  Sum_probs=141.3

Q ss_pred             CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceec
Q psy9056           1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLV   80 (359)
Q Consensus         1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~   80 (359)
                      |.|+|||++|+++|||||++++  ++|++||+++|++|++|++++|++++|..++++|+++|++++++||+++||||+++
T Consensus       103 G~a~GgG~~lalacD~ria~~~--a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv  180 (257)
T PRK07658        103 GAALGGGLELAMSCHIRFATES--AKLGLPELNLGLIPGFAGTQRLPRYVGKAKALEMMLTSEPITGAEALKWGLVNGVF  180 (257)
T ss_pred             CeeeeHHHHHHHhCCEEEecCC--CcccCcccccCCCCCCcHHHHHHHHhCHHHHHHHHHcCCCcCHHHHHHcCCcCeec
Confidence            6899999999999999999988  99999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccccccCCCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHhhCCCCCcH
Q psy9056          81 EPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAP  160 (359)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (359)
                      |+             +++.+.+.++++++++.++.                                           +.
T Consensus       181 ~~-------------~~l~~~a~~~a~~l~~~~~~-------------------------------------------a~  204 (257)
T PRK07658        181 PE-------------ETLLDDAKKLAKKIAGKSPA-------------------------------------------TT  204 (257)
T ss_pred             Ch-------------hHHHHHHHHHHHHHHhCCHH-------------------------------------------HH
Confidence            98             88999999999999988762                                           22


Q ss_pred             HHHHHHHHHhhccChhhHHHHHHHHhhhhhcChhhHHHHHhHhhhhhhhhc
Q psy9056         161 LKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQTECKKN  211 (359)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~s~~~~~~~~af~~k~~~~~~  211 (359)
                      ..+|+.++.....++++.++.|.+.+..++.++|+++++.+|++||+|++.
T Consensus       205 ~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~egi~af~~kr~p~~~  255 (257)
T PRK07658        205 RAVLELLQTTKSSSYYEGVKREAKIFGEVFTSEDAKEGVQAFLEKRKPSFS  255 (257)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCCCCC
Confidence            356677777777789999999999999999999999999999999998763

>PRK06563 enoyl-CoA hydratase; Provisional

Probab=99.96  E-value=6.1e-29  Score=230.58  Aligned_cols=153  Identities=22%  Similarity=0.275  Sum_probs=140.5

Q ss_pred             CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceec
Q psy9056           1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLV   80 (359)
Q Consensus         1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~   80 (359)
                      |.|+|||++|+++||||||+++  ++|++||+++|++|++|++++|++++|..++++|++||++++++||+++||||+++
T Consensus       101 G~a~GgG~~lal~cD~ria~~~--a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~ltg~~~~a~eA~~~Glv~~vv  178 (255)
T PRK06563        101 GYCLTLGIELMLAADIVVAADN--TRFAQLEVQRGILPFGGATLRFPQAAGWGNAMRYLLTGDEFDAQEALRLGLVQEVV  178 (255)
T ss_pred             CeeecHHHHHHHhCCEEEecCC--CEEeChhhhcCCCCCccHHHHHHHHhhHHHHHHHHHcCCCcCHHHHHHcCCCcEee
Confidence            6899999999999999999998  99999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccccccCCCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHhhCCCCCcH
Q psy9056          81 EPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAP  160 (359)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (359)
                      |+             +++.+.+.+++++++..++..                                           .
T Consensus       179 ~~-------------~~l~~~a~~~a~~la~~~~~a-------------------------------------------~  202 (255)
T PRK06563        179 PP-------------GEQLERAIELAERIARAAPLG-------------------------------------------V  202 (255)
T ss_pred             CH-------------HHHHHHHHHHHHHHHhcCHHH-------------------------------------------H
Confidence            98             889999999999999887632                                           2


Q ss_pred             HHHHHHHHHhhccChhhHHHHHHHHhhhhhcChhhHHHHHhHhhhhhhhhc
Q psy9056         161 LKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQTECKKN  211 (359)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~s~~~~~~~~af~~k~~~~~~  211 (359)
                      ..+|+.++.....+++++++.|.+.+..++.++|+++++.+|++||+|++.
T Consensus       203 ~~~K~~~~~~~~~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~~kr~p~~~  253 (255)
T PRK06563        203 QATLASARAAVREGEAAAAAQLPPELRPLFTSEDAKEGVQAFLERRPARFK  253 (255)
T ss_pred             HHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCchHHHHHHHHhcCCCCCCC
Confidence            245666676667789999999999999999999999999999999998763

>PRK08138 enoyl-CoA hydratase; Provisional

Probab=99.96  E-value=8.9e-29  Score=230.20  Aligned_cols=153  Identities=27%  Similarity=0.337  Sum_probs=140.9

Q ss_pred             CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceec
Q psy9056           1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLV   80 (359)
Q Consensus         1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~   80 (359)
                      |.|+|||++|+++|||||++++  ++|++||+++|++|++|++++|++++|..++++|+++|++++++||+++||||+++
T Consensus       107 G~a~GgG~~lalacD~ria~~~--a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv  184 (261)
T PRK08138        107 GYALGGGCELAMHADIIVAGES--ASFGQPEIKVGLMPGAGGTQRLVRAVGKFKAMRMALTGCMVPAPEALAIGLVSEVV  184 (261)
T ss_pred             cEEEcHHHHHHHhCCEEEecCC--CEeeCcccccccCCCCcHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHCCCCcEec
Confidence            6799999999999999999988  99999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccccccCCCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHhhCCCCCcH
Q psy9056          81 EPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAP  160 (359)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (359)
                      |+             +++.+.+.++++++++.|+.                                           ++
T Consensus       185 ~~-------------~~l~~~a~~~a~~l~~~~~~-------------------------------------------a~  208 (261)
T PRK08138        185 ED-------------EQTLPRALELAREIARMPPL-------------------------------------------AL  208 (261)
T ss_pred             Cc-------------hHHHHHHHHHHHHHHhCCHH-------------------------------------------HH
Confidence            98             88999999999999987752                                           23


Q ss_pred             HHHHHHHHHhhccChhhHHHHHHHHhhhhhcChhhHHHHHhHhhhhhhhhc
Q psy9056         161 LKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQTECKKN  211 (359)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~s~~~~~~~~af~~k~~~~~~  211 (359)
                      ..+|+.++.....++++++..|.+.+..++.++++++++++|++||+|++.
T Consensus       209 ~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~i~af~~kr~~~~~  259 (261)
T PRK08138        209 AQIKEVVLAGADAPLDAALALERKAFQLLFDSEDQKEGMDAFLEKRKPAYK  259 (261)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHhcCCCCCCC
Confidence            356677777777889999999999999999999999999999999998763

>PRK09674 enoyl-CoA hydratase-isomerase; Provisional

Probab=99.96  E-value=8.6e-29  Score=229.54  Aligned_cols=153  Identities=30%  Similarity=0.404  Sum_probs=141.5

Q ss_pred             CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceec
Q psy9056           1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLV   80 (359)
Q Consensus         1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~   80 (359)
                      |.|+|||++|+++|||||++++  ++|++||+++|++|++|++++|++++|..++++|+++|++++++||+++||||+++
T Consensus       101 G~a~GgG~~lalacD~~ia~~~--a~f~~pe~~~Gl~p~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~eA~~~Glv~~vv  178 (255)
T PRK09674        101 GYALGAGCELALLCDIVIAGEN--ARFGLPEITLGIMPGAGGTQRLIRSVGKSLASQMVLTGESITAQQAQQAGLVSEVF  178 (255)
T ss_pred             CEeehHHHHHHHhCCEEEecCC--CEEeCchhhcCCCCCccHHHHHHHHhCHHHHHHHHHcCCccCHHHHHHcCCCcEec
Confidence            6899999999999999999988  99999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccccccCCCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHhhCCCCCcH
Q psy9056          81 EPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAP  160 (359)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (359)
                      |+             +++.+.+.+++++++..|+.                                           +.
T Consensus       179 ~~-------------~~~~~~a~~~a~~l~~~~~~-------------------------------------------a~  202 (255)
T PRK09674        179 PP-------------ELTLERALQLASKIARHSPL-------------------------------------------AL  202 (255)
T ss_pred             Ch-------------HHHHHHHHHHHHHHHhCCHH-------------------------------------------HH
Confidence            98             88999999999999988763                                           22


Q ss_pred             HHHHHHHHHhhccChhhHHHHHHHHhhhhhcChhhHHHHHhHhhhhhhhhc
Q psy9056         161 LKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQTECKKN  211 (359)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~s~~~~~~~~af~~k~~~~~~  211 (359)
                      ..+|+.++.....++++.++.|.+.+..++.++|+++++++|++||+|++.
T Consensus       203 ~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~i~af~~kr~p~~~  253 (255)
T PRK09674        203 RAAKQALRQSQEVDLQAGLAQERQLFTLLAATEDRHEGISAFLEKRTPDFK  253 (255)
T ss_pred             HHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHhccCCCCCC
Confidence            356677777777889999999999999999999999999999999988763

>PRK05809 3-hydroxybutyryl-CoA dehydratase; Validated

Probab=99.96  E-value=1e-28  Score=229.71  Aligned_cols=153  Identities=30%  Similarity=0.429  Sum_probs=142.0

Q ss_pred             CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceec
Q psy9056           1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLV   80 (359)
Q Consensus         1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~   80 (359)
                      |.|+|||++|+++|||||++++  ++|++||+++|++|++|++++|++++|..++++|+++|++++++||+++||||+++
T Consensus       106 G~a~GgG~~lal~cD~~va~~~--a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv  183 (260)
T PRK05809        106 GFALGGGCELSMACDIRIASEK--AKFGQPEVGLGITPGFGGTQRLARIVGPGKAKELIYTGDMINAEEALRIGLVNKVV  183 (260)
T ss_pred             CeeecHHHHHHHhCCEEEeeCC--CEEeCcccccCCCCCccHHHHHHHHhCHHHHHHHHHhCCCCCHHHHHHcCCCCccc
Confidence            6899999999999999999988  99999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccccccCCCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHhhCCCCCcH
Q psy9056          81 EPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAP  160 (359)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (359)
                      |+             +++.+.+.+++++++..++.                                           +.
T Consensus       184 ~~-------------~~l~~~a~~~a~~la~~~~~-------------------------------------------a~  207 (260)
T PRK05809        184 EP-------------EKLMEEAKALANKIAANAPI-------------------------------------------AV  207 (260)
T ss_pred             Ch-------------HHHHHHHHHHHHHHHhCCHH-------------------------------------------HH
Confidence            98             88999999999999988762                                           23


Q ss_pred             HHHHHHHHHhhccChhhHHHHHHHHhhhhhcChhhHHHHHhHhhhhhhhhc
Q psy9056         161 LKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQTECKKN  211 (359)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~s~~~~~~~~af~~k~~~~~~  211 (359)
                      ..+|+.++.....+++++++.|.+.+..++.++|+++++++|++||+|++.
T Consensus       208 ~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~egi~af~~~r~p~~~  258 (260)
T PRK05809        208 KLCKDAINRGMQVDIDTAVAIEAEDFGECFSTEDQTEGMTAFVEKREKNFK  258 (260)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHhcCCCCCCC
Confidence            356777777777889999999999999999999999999999999998763

>PRK07799 enoyl-CoA hydratase; Provisional

Probab=99.96  E-value=9.1e-29  Score=230.43  Aligned_cols=153  Identities=17%  Similarity=0.198  Sum_probs=140.9

Q ss_pred             CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceec
Q psy9056           1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLV   80 (359)
Q Consensus         1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~   80 (359)
                      |.|+|||++|+++|||||++++  ++|++||+++|++|++|++++|++++|..++++|++||++++++||+++||||+++
T Consensus       109 G~a~GgG~~lalacD~ria~~~--a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~ltg~~~~a~eA~~~Glv~~vv  186 (263)
T PRK07799        109 GPAIAGGTEILQGTDIRVAGES--AKFGISEAKWSLFPMGGSAVRLVRQIPYTVACDLLLTGRHITAAEAKEIGLIGHVV  186 (263)
T ss_pred             CeEeccHHHHHHhCCEEEecCC--CEecCcccccCcCCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHcCCccEec
Confidence            6899999999999999999988  99999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccccccCCCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHhhCCCCCcH
Q psy9056          81 EPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAP  160 (359)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (359)
                      |+             +++.+.+.+++++++..|+.                                           +.
T Consensus       187 ~~-------------~~l~~~a~~~a~~~~~~~~~-------------------------------------------a~  210 (263)
T PRK07799        187 PD-------------GQALDKALELAELINANGPL-------------------------------------------AV  210 (263)
T ss_pred             Cc-------------chHHHHHHHHHHHHHhcChH-------------------------------------------HH
Confidence            98             78899999999999988762                                           22


Q ss_pred             HHHHHHHHHhhccChhhHHHHHHHHhhhhhcChhhHHHHHhHhhhhhhhhc
Q psy9056         161 LKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQTECKKN  211 (359)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~s~~~~~~~~af~~k~~~~~~  211 (359)
                      ..+|+.++.....+++++++.|.+.+..++.++|+++++++|++||+|++.
T Consensus       211 ~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~~~~egi~af~~~r~p~~~  261 (263)
T PRK07799        211 QAILRTIRETEGMHENEAFKIDTKIGIPVFLSEDAKEGPRAFAEKRAPNFQ  261 (263)
T ss_pred             HHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCccHHHHHHHHHccCCCCCC
Confidence            356677777777889999999999999999999999999999999988763

>PRK06494 enoyl-CoA hydratase; Provisional

Probab=99.96  E-value=1.1e-28  Score=229.32  Aligned_cols=153  Identities=22%  Similarity=0.247  Sum_probs=139.1

Q ss_pred             CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceec
Q psy9056           1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLV   80 (359)
Q Consensus         1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~   80 (359)
                      |+|+|||++|+++|||||++++  ++|++||+++|++|++|++++|++++|..++++|++||++++++||+++||||+++
T Consensus       103 G~a~GgG~~lalacD~ria~~~--a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~~lll~g~~~~a~eA~~~GLv~~vv  180 (259)
T PRK06494        103 GVAMGGGFELALACDLIVAAEN--ATFALPEPRVGLAALAGGLHRLPRQIGLKRAMGMILTGRRVTAREGLELGFVNEVV  180 (259)
T ss_pred             CEEecHHHHHHHhCCEEEEeCC--CEEeCcccccCCCCCchHHHHHHHHcCHHHHHHHHHcCCcCCHHHHHHcCCCcEec
Confidence            6899999999999999999988  99999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccccccCCCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHhhCCCCCcH
Q psy9056          81 EPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAP  160 (359)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (359)
                      |+             +++++.+.+++++++..|+.                                           +.
T Consensus       181 ~~-------------~~l~~~a~~~a~~la~~~~~-------------------------------------------a~  204 (259)
T PRK06494        181 PA-------------GELLAAAERWADDILACSPL-------------------------------------------SI  204 (259)
T ss_pred             CH-------------hHHHHHHHHHHHHHHhcCHH-------------------------------------------HH
Confidence            98             88999999999999998873                                           22


Q ss_pred             HHHHHHHHHhhccChhhHHHHH--HHHhhhhhcChhhHHHHHhHhhhhhhhhc
Q psy9056         161 LKILDVVRTGIEKGPSAGYEAE--AEGFSQLAMTPQSKGLMGLFRAQTECKKN  211 (359)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~e--~~~~~~~~~s~~~~~~~~af~~k~~~~~~  211 (359)
                      ..+|+.++.....+++++++.|  ...+..++.++|+++++.+|++||+|++.
T Consensus       205 ~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~d~~eg~~af~~kr~p~~~  257 (259)
T PRK06494        205 RASKQAVYRGLEVSLEEAITAQRDYPAVEARRASQDYIEGPKAFAEKRPPRWK  257 (259)
T ss_pred             HHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHccCCCCCC
Confidence            3456677776677889999998  55788999999999999999999987763

>PRK08140 enoyl-CoA hydratase; Provisional

Probab=99.96  E-value=1.6e-28  Score=228.75  Aligned_cols=152  Identities=22%  Similarity=0.298  Sum_probs=140.7

Q ss_pred             CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceec
Q psy9056           1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLV   80 (359)
Q Consensus         1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~   80 (359)
                      |+|+|||++|+++||+||++++  ++|++||+++|++|++|++++|++++|..++++|+++|++++++||+++||||+++
T Consensus       108 G~a~GgG~~lalacD~ria~~~--a~f~~pe~~~G~~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv  185 (262)
T PRK08140        108 GVAAGAGANLALACDIVLAARS--ASFIQAFVKIGLVPDSGGTWFLPRLVGMARALGLALLGEKLSAEQAEQWGLIWRVV  185 (262)
T ss_pred             CeeehhHHHHHHhCCEEEecCC--CEEeccccccCCCCCccHHHHHHHHhCHHHHHHHHHcCCCcCHHHHHHcCCccEee
Confidence            6899999999999999999998  99999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccccccCCCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHhhCCCCCcH
Q psy9056          81 EPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAP  160 (359)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (359)
                      |+             +++++.+.+++++++..++.                                           +.
T Consensus       186 ~~-------------~~l~~~a~~~a~~ia~~~~~-------------------------------------------a~  209 (262)
T PRK08140        186 DD-------------AALADEAQQLAAHLATQPTR-------------------------------------------GL  209 (262)
T ss_pred             Ch-------------HHHHHHHHHHHHHHHhCCHH-------------------------------------------HH
Confidence            98             88999999999999988763                                           22


Q ss_pred             HHHHHHHHHhhccChhhHHHHHHHHhhhhhcChhhHHHHHhHhhhhhhhh
Q psy9056         161 LKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQTECKK  210 (359)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~s~~~~~~~~af~~k~~~~~  210 (359)
                      ..+|+.++.....+++++++.|.+.+..++.++|+++++.+|++||+|.+
T Consensus       210 ~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr~p~~  259 (262)
T PRK08140        210 ALIKQAMNASATNTLDAQLDLERDLQREAGRSADYAEGVSAFLEKRAPRF  259 (262)
T ss_pred             HHHHHHHHHhhhCCHHHHHHHHHHHHHHHhcChhHHHHHHHHhcCCCCCC
Confidence            35667777777788999999999999999999999999999999998776

>PRK09245 enoyl-CoA hydratase; Provisional

Probab=99.96  E-value=1.3e-28  Score=229.84  Aligned_cols=153  Identities=22%  Similarity=0.256  Sum_probs=141.0

Q ss_pred             CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceec
Q psy9056           1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLV   80 (359)
Q Consensus         1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~   80 (359)
                      |+|+|||++|+++|||||++++  ++|++||+++|++|++|+++++++++|..++++|+++|++++++||+++||||+++
T Consensus       112 G~a~GgG~~lalacD~ria~~~--a~f~~pe~~~G~~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv  189 (266)
T PRK09245        112 GPAIGAGCDLACMCDIRIASET--ARFAESFVKLGLIPGDGGAWLLPRIIGMARAAEMAFTGDAIDAATALEWGLVSRVV  189 (266)
T ss_pred             CEeecHHHHHHHhCCEEEecCC--CEEcccccccCcCCCcchhhhHHHHhhHHHHHHHHHcCCCcCHHHHHHcCCcceec
Confidence            6899999999999999999988  99999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccccccCCCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHhhCCCCCcH
Q psy9056          81 EPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAP  160 (359)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (359)
                      |+             +++++.+.+++++++..|+..                                           .
T Consensus       190 ~~-------------~~l~~~a~~~a~~l~~~~~~a-------------------------------------------~  213 (266)
T PRK09245        190 PA-------------DQLLPAARALAERIAANPPHA-------------------------------------------L  213 (266)
T ss_pred             CH-------------HHHHHHHHHHHHHHHhCCHHH-------------------------------------------H
Confidence            98             889999999999999988732                                           2


Q ss_pred             HHHHHHHHHhhccChhhHHHHHHHHhhhhhcChhhHHHHHhHhhhhhhhhc
Q psy9056         161 LKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQTECKKN  211 (359)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~s~~~~~~~~af~~k~~~~~~  211 (359)
                      ..+|++++.....++++.+..|.+.+..++.++|+++++.+|++||+|.+.
T Consensus       214 ~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~~kr~p~~~  264 (266)
T PRK09245        214 RLTKRLLREGQHASLDTLLELSAAYQALAHHTADHREAVDAFLEKRPPVFT  264 (266)
T ss_pred             HHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCHhHHHHHHHHHcCCCCCCC
Confidence            246677777777788999999999999999999999999999999998763

>PLN02664 enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA isomerase

Probab=99.96  E-value=1.3e-28  Score=230.71  Aligned_cols=154  Identities=19%  Similarity=0.201  Sum_probs=140.1

Q ss_pred             CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceec
Q psy9056           1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLV   80 (359)
Q Consensus         1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~   80 (359)
                      |+|+|||++|+++||+||++++  ++|++||+++|++|++|++++|++++|..++++|++||++++++||+++||||+++
T Consensus       120 G~a~GgG~~lal~cD~~ia~~~--a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~A~~l~ltg~~~~a~eA~~~GLv~~vv  197 (275)
T PLN02664        120 GACIGGGVDIVTACDIRYCSED--AFFSVKEVDLAITADLGTLQRLPSIVGYGNAMELALTGRRFSGSEAKELGLVSRVF  197 (275)
T ss_pred             CccccchHHHHHhCCEEEecCC--CEeccHHHhhCCCCCccHHHHHHHHhCHHHHHHHHHhCCCCCHHHHHHcCCCceee
Confidence            6899999999999999999998  99999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccccccCCCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHhhCCCCCcH
Q psy9056          81 EPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAP  160 (359)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (359)
                      |+.            +++.+.+.+++++++..++..                                           .
T Consensus       198 ~~~------------~~l~~~~~~~a~~ia~~~p~a-------------------------------------------~  222 (275)
T PLN02664        198 GSK------------EDLDEGVRLIAEGIAAKSPLA-------------------------------------------V  222 (275)
T ss_pred             CCh------------hHHHHHHHHHHHHHHhCCHHH-------------------------------------------H
Confidence            841            779899999999999988732                                           2


Q ss_pred             HHHHHHHHHhhccChhhHHHHHHHHhhhhhcChhhHHHHHhHhhhhhhhhc
Q psy9056         161 LKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQTECKKN  211 (359)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~s~~~~~~~~af~~k~~~~~~  211 (359)
                      ..+|+.++.....+++++++.|.+.+..++.++|++||+++|++||+|.+.
T Consensus       223 ~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~ekr~p~~~  273 (275)
T PLN02664        223 TGTKAVLLRSRELSVEQGLDYVATWNSAMLVSDDLNEAVSAQIQKRKPVFA  273 (275)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHhccChhHHHHHHHHhccCCCCCC
Confidence            245666777667789999999999999999999999999999999998764

>PRK06142 enoyl-CoA hydratase; Provisional

Probab=99.96  E-value=1.1e-28  Score=230.92  Aligned_cols=153  Identities=19%  Similarity=0.241  Sum_probs=140.2

Q ss_pred             CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceec
Q psy9056           1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLV   80 (359)
Q Consensus         1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~   80 (359)
                      |.|+|||++|+++||+||++++  ++|++||+++|++|++|++++|++++|..++++|+++|++++++||+++||||+++
T Consensus       118 G~a~GgG~~lalacD~~ia~~~--a~f~~pe~~~Gl~p~~g~~~~l~~~~G~~~a~~l~l~g~~~~a~eA~~~GLv~~vv  195 (272)
T PRK06142        118 GWCIGGGVDLISACDMRYASAD--AKFSVREVDLGMVADVGSLQRLPRIIGDGHLRELALTGRDIDAAEAEKIGLVNRVY  195 (272)
T ss_pred             CccccchHHHHHhCCEEEecCC--CeecchhhhhCCCCCchHHHHHHHHhCHHHHHHHHHhCCCcCHHHHHHcCCccEec
Confidence            6899999999999999999998  99999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccccccCCCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHhhCCCCCcH
Q psy9056          81 EPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAP  160 (359)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (359)
                      |+.            +++.+.+.+++++++..|+..                                           .
T Consensus       196 ~~~------------~~l~~~a~~~a~~ia~~~~~a-------------------------------------------~  220 (272)
T PRK06142        196 DDA------------DALLAAAHATAREIAAKSPLA-------------------------------------------V  220 (272)
T ss_pred             CCH------------HHHHHHHHHHHHHHHhCCHHH-------------------------------------------H
Confidence            852            679999999999999887732                                           2


Q ss_pred             HHHHHHHHHhhccChhhHHHHHHHHhhhhhcChhhHHHHHhHhhhhhhhh
Q psy9056         161 LKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQTECKK  210 (359)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~s~~~~~~~~af~~k~~~~~  210 (359)
                      ..+|+.++.....++++.++.|.+.+..++.|+|++||+.+|++||+|+|
T Consensus       221 ~~~K~~l~~~~~~~l~~~~~~~~~~~~~~~~~~d~~egv~af~~kr~p~~  270 (272)
T PRK06142        221 RGTKEVLDYMRDHRVADGLRYVATWNAAMLPSKDLTEAIAAHMEKRPPEF  270 (272)
T ss_pred             HHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCccHHHHHHHHhcCCCCCC
Confidence            24666777777778999999999999999999999999999999999876

>PRK07657 enoyl-CoA hydratase; Provisional

Probab=99.96  E-value=1.7e-28  Score=228.26  Aligned_cols=153  Identities=29%  Similarity=0.467  Sum_probs=141.4

Q ss_pred             CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceec
Q psy9056           1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLV   80 (359)
Q Consensus         1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~   80 (359)
                      |.|+|||++|+++|||||++++  ++|++||+++|++|++|++++|++++|..++++|+++|++++++||+++||||+++
T Consensus       106 G~a~GgG~~lal~cD~~ia~~~--a~f~~pe~~~G~~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv  183 (260)
T PRK07657        106 GIALGGGLELALACDFRIAAES--ASLGLTETTLAIIPGAGGTQRLPRLIGVGRAKELIYTGRRISAQEAKEIGLVEFVV  183 (260)
T ss_pred             CEeechHHHHHHhCCEEEeeCC--CEEcCchhccCcCCCccHHHHHHHHhCHHHHHHHHHhCCCCCHHHHHHcCCCCeec
Confidence            6899999999999999999988  99999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccccccCCCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHhhCCCCCcH
Q psy9056          81 EPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAP  160 (359)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (359)
                      |+             +++++.+.+++++++..++.                                           +.
T Consensus       184 ~~-------------~~l~~~a~~~a~~l~~~~~~-------------------------------------------a~  207 (260)
T PRK07657        184 PA-------------HLLEEKAIEIAEKIASNGPI-------------------------------------------AV  207 (260)
T ss_pred             CH-------------HHHHHHHHHHHHHHHhCCHH-------------------------------------------HH
Confidence            98             88999999999999988763                                           23


Q ss_pred             HHHHHHHHHhhccChhhHHHHHHHHhhhhhcChhhHHHHHhHhhhhhhhhc
Q psy9056         161 LKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQTECKKN  211 (359)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~s~~~~~~~~af~~k~~~~~~  211 (359)
                      ..+|+.++.....+++++++.|.+.+..++.++|+++++++|++||+|++.
T Consensus       208 ~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~~r~~~~~  258 (260)
T PRK07657        208 RQAKEAISNGIQVDLHTGLQIEKQAYEGTIPTKDRLEGLQAFKEKRKPMYK  258 (260)
T ss_pred             HHHHHHHHHhccCCHHHHHHHHHHHHHHHhcCHhHHHHHHHHhcCCCCCCC
Confidence            356677777777889999999999999999999999999999999988763

>PLN02888 enoyl-CoA hydratase

Probab=99.96  E-value=2.9e-28  Score=227.07  Aligned_cols=154  Identities=23%  Similarity=0.289  Sum_probs=140.0

Q ss_pred             CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceec
Q psy9056           1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLV   80 (359)
Q Consensus         1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~   80 (359)
                      |.|+|||++|+++|||||++++  ++|++||+++|++|++|++++|++++|..++++|++||++++++||+++||||+++
T Consensus       108 G~a~GgG~~lal~cD~ria~~~--a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~ltg~~~~a~eA~~~Glv~~vv  185 (265)
T PLN02888        108 GFAITAGFEIALACDILVASRG--AKFIDTHAKFGIFPSWGLSQKLSRIIGANRAREVSLTAMPLTAETAERWGLVNHVV  185 (265)
T ss_pred             CeeechHHHHHHhCCEEEecCC--CEecCccccccCCCCccHhhHHHHHhCHHHHHHHHHhCCccCHHHHHHcCCccEee
Confidence            6899999999999999999998  99999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccccccCCCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHhhCCCCCcH
Q psy9056          81 EPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAP  160 (359)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (359)
                      |+             +++.+.+.+++++++..++.                                           +.
T Consensus       186 ~~-------------~~l~~~a~~~a~~la~~~~~-------------------------------------------a~  209 (265)
T PLN02888        186 EE-------------SELLKKAREVAEAIIKNNQG-------------------------------------------MV  209 (265)
T ss_pred             Ch-------------HHHHHHHHHHHHHHHhCCHH-------------------------------------------HH
Confidence            98             88999999999999998773                                           22


Q ss_pred             HHHHHHHHHhhccChhhHHHHHHHHhhhhh--cChhhHHHHHhHhhhhhhhhcC
Q psy9056         161 LKILDVVRTGIEKGPSAGYEAEAEGFSQLA--MTPQSKGLMGLFRAQTECKKNR  212 (359)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~--~s~~~~~~~~af~~k~~~~~~~  212 (359)
                      ..+|+.++.....+++++++.|.+.+..++  .++|+++++++|++||++|+.+
T Consensus       210 ~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~d~~e~~~af~ekr~~~~~~  263 (265)
T PLN02888        210 LRYKSVINDGLKLDLGHALQLEKERAHDYYNGMTKEQFQKMQEFIAGRSSKKPS  263 (265)
T ss_pred             HHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHhcCCCCCCC
Confidence            356677777777888999999988888875  5999999999999999988753

>PRK06127 enoyl-CoA hydratase; Provisional

Probab=99.96  E-value=2.5e-28  Score=228.09  Aligned_cols=153  Identities=19%  Similarity=0.232  Sum_probs=140.7

Q ss_pred             CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceec
Q psy9056           1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLV   80 (359)
Q Consensus         1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~   80 (359)
                      |.|+|||++|+++||+||++++  ++|++||+++|++|++|++++|++++|..++++|++||++++++||+++||||+++
T Consensus       115 G~a~GgG~~LalacD~~ia~~~--a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~ltg~~~~a~eA~~~Glv~~vv  192 (269)
T PRK06127        115 GYCIGGGMGIALACDIRIAAED--SRFGIPAARLGLGYGYDGVKNLVDLVGPSAAKDLFYTARRFDAAEALRIGLVHRVT  192 (269)
T ss_pred             CEEecHHHHHHHhCCEEEeeCC--CEeeCchhhhCCCCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHcCCCCEee
Confidence            6899999999999999999998  99999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccccccCCCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHhhCCCCCcH
Q psy9056          81 EPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAP  160 (359)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (359)
                      |+             +++++.+.+++++++..++..                                           .
T Consensus       193 ~~-------------~~l~~~a~~~a~~l~~~~~~a-------------------------------------------~  216 (269)
T PRK06127        193 AA-------------DDLETALADYAATIAGNAPLT-------------------------------------------L  216 (269)
T ss_pred             CH-------------HHHHHHHHHHHHHHHhCCHHH-------------------------------------------H
Confidence            98             889999999999999887632                                           2


Q ss_pred             HHHHHHHHHhhccChhhHHHHHHHHhhhhhcChhhHHHHHhHhhhhhhhhc
Q psy9056         161 LKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQTECKKN  211 (359)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~s~~~~~~~~af~~k~~~~~~  211 (359)
                      ..+|+.++.....++++.++.|.+.+..++.++|+++++.+|++||+|++.
T Consensus       217 ~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~d~~e~~~af~ekr~p~~~  267 (269)
T PRK06127        217 RAAKRAIAELLKDEPERDMAACQALVAACFDSEDYREGRAAFMEKRKPVFK  267 (269)
T ss_pred             HHHHHHHHHhccCCHHHHHHHHHHHHHHHhcChHHHHHHHHHhcCCCCCCC
Confidence            245666676667788999999999999999999999999999999998764

>PRK07511 enoyl-CoA hydratase; Provisional

Probab=99.96  E-value=2.9e-28  Score=226.69  Aligned_cols=152  Identities=24%  Similarity=0.312  Sum_probs=140.3

Q ss_pred             CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceec
Q psy9056           1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLV   80 (359)
Q Consensus         1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~   80 (359)
                      |.|+|||++|+++||+||++++  ++|++||+++|++|++|++++|++++|..++++|++||++++++||+++||||+++
T Consensus       107 G~a~GgG~~lala~D~~ia~~~--a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~~l~ltg~~~~a~eA~~~Glv~~vv  184 (260)
T PRK07511        107 GAAAGAGFSLALACDLLVAARD--AKFVMAYVKVGLTPDGGGSWFLARALPRQLATELLLEGKPISAERLHALGVVNRLA  184 (260)
T ss_pred             CeeehHHHHHHHhCCEEEeeCC--CEEeccccccCcCCCchHHHHHHHHhCHHHHHHHHHhCCCCCHHHHHHcCCccEee
Confidence            6899999999999999999998  99999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccccccCCCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHhhCCCCCcH
Q psy9056          81 EPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAP  160 (359)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (359)
                      |+             +++.+++.++++++++.++.                                           +.
T Consensus       185 ~~-------------~~~~~~a~~~a~~l~~~~~~-------------------------------------------~~  208 (260)
T PRK07511        185 EP-------------GQALAEALALADQLAAGSPN-------------------------------------------AL  208 (260)
T ss_pred             Cc-------------hHHHHHHHHHHHHHHhCCHH-------------------------------------------HH
Confidence            98             78899999999999987762                                           22


Q ss_pred             HHHHHHHHHhhccChhhHHHHHHHHhhhhhcChhhHHHHHhHhhhhhhhh
Q psy9056         161 LKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQTECKK  210 (359)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~s~~~~~~~~af~~k~~~~~  210 (359)
                      ..+|+.++.....+++++++.|.+.+..++.++++++++++|+++|+|++
T Consensus       209 ~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~i~~f~~~r~~~~  258 (260)
T PRK07511        209 ARIKSLIADAPEATLAAQLEAERDHFVASLHHADALEGIAAFLEKRAPDY  258 (260)
T ss_pred             HHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCchHHHHHHHHhccCCCCC
Confidence            34667777777788999999999999999999999999999999998876

>PRK03580 carnitinyl-CoA dehydratase; Provisional

Probab=99.96  E-value=3.2e-28  Score=226.49  Aligned_cols=153  Identities=22%  Similarity=0.302  Sum_probs=138.4

Q ss_pred             CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceec
Q psy9056           1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLV   80 (359)
Q Consensus         1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~   80 (359)
                      |+|+|||++|+++|||||++++  ++|++||+++|++|++|++++|++++|..++++++++|++++++||+++||||+++
T Consensus       103 G~a~GgG~~lalacD~~ia~~~--a~f~~pe~~~G~~p~~g~~~~l~~~vg~~~a~~l~l~g~~~~a~eA~~~Glv~~vv  180 (261)
T PRK03580        103 GYAFGGGFELALAADFIVCADN--ASFALPEAKLGIVPDSGGVLRLPKRLPPAIANEMVMTGRRMDAEEALRWGIVNRVV  180 (261)
T ss_pred             CeeehHHHHHHHHCCEEEecCC--CEEeCcccccCcCCCccHHHHHHHHhCHHHHHHHHHhCCccCHHHHHHcCCCcEec
Confidence            6899999999999999999988  99999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccccccCCCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHhhCCCCCcH
Q psy9056          81 EPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAP  160 (359)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (359)
                      |+             +++.+.+.+++.+++..++..                                           .
T Consensus       181 ~~-------------~~l~~~a~~~a~~la~~~~~a-------------------------------------------~  204 (261)
T PRK03580        181 PQ-------------AELMDRARELAQQLVNSAPLA-------------------------------------------I  204 (261)
T ss_pred             CH-------------hHHHHHHHHHHHHHHhCCHHH-------------------------------------------H
Confidence            98             889999999999999887732                                           2


Q ss_pred             HHHHHHHHHhhccChhhHHHHHH----HHhhhhhcChhhHHHHHhHhhhhhhhhc
Q psy9056         161 LKILDVVRTGIEKGPSAGYEAEA----EGFSQLAMTPQSKGLMGLFRAQTECKKN  211 (359)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~e~----~~~~~~~~s~~~~~~~~af~~k~~~~~~  211 (359)
                      ..+|+.++.....+++++++.|.    +.+..++.++|+++++++|++||+|++.
T Consensus       205 ~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~d~~e~~~af~ekr~~~~~  259 (261)
T PRK03580        205 AALKEIYRETSEMPVEEAYRYIRSGVLKHYPSVLHSEDALEGPRAFAEKRDPVWK  259 (261)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHhhhHHHHHHHhcCccHHHHHHHHhcCCCCCCC
Confidence            24566677766778888888886    4778899999999999999999987763

>PRK08258 enoyl-CoA hydratase; Provisional

Probab=99.96  E-value=3.3e-28  Score=228.20  Aligned_cols=153  Identities=21%  Similarity=0.227  Sum_probs=140.4

Q ss_pred             CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCC-CcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCccee
Q psy9056           1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLP-GAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQL   79 (359)
Q Consensus         1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p-~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~   79 (359)
                      |.|+|||++|+++|||||++++  ++|++||+++|++| ++|++++|++++|..++++|+++|++++++||+++||||++
T Consensus       122 G~a~GgG~~LalacD~ria~~~--a~f~~pe~~~Gl~p~~~g~~~~l~~~vG~~~a~~l~ltg~~~~a~eA~~~Glv~~v  199 (277)
T PRK08258        122 GVCAGAGAILAMASDLRLGTPS--AKTAFLFTRVGLAGADMGACALLPRIIGQGRASELLYTGRSMSAEEGERWGFFNRL  199 (277)
T ss_pred             CeeehHHHHHHHhCCEEEecCC--CEEeccccccCcCCCCchHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHcCCCcEe
Confidence            6899999999999999999998  99999999999995 78899999999999999999999999999999999999999


Q ss_pred             cCCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccccccCCCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHhhCCCCCc
Q psy9056          80 VEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPA  159 (359)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (359)
                      +|+             +++++.+.+++++++..|+..                                           
T Consensus       200 v~~-------------~~l~~~a~~~a~~la~~~~~a-------------------------------------------  223 (277)
T PRK08258        200 VEP-------------EELLAEAQALARRLAAGPTFA-------------------------------------------  223 (277)
T ss_pred             cCH-------------HHHHHHHHHHHHHHHhCCHHH-------------------------------------------
Confidence            998             889999999999999988732                                           


Q ss_pred             HHHHHHHHHHhhccChhhHHHHHHHHhhhhhcChhhHHHHHhHhhhhhhhhc
Q psy9056         160 PLKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQTECKKN  211 (359)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~s~~~~~~~~af~~k~~~~~~  211 (359)
                      ...+|+.++.....++++.++.|.+.+..++.|+|+++++++|++||+|++.
T Consensus       224 ~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~d~~eg~~af~ekr~p~~~  275 (277)
T PRK08258        224 HGMTKTMLHQEWDMGLEEAIEAEAQAQAICMQTEDFRRAYEAFVAKRKPVFE  275 (277)
T ss_pred             HHHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCchHHHHHHHHhcCCCCCCC
Confidence            2246677777777889999999999999999999999999999999998763

>PRK07659 enoyl-CoA hydratase; Provisional

Probab=99.96  E-value=2.4e-28  Score=227.18  Aligned_cols=152  Identities=19%  Similarity=0.174  Sum_probs=139.9

Q ss_pred             CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceec
Q psy9056           1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLV   80 (359)
Q Consensus         1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~   80 (359)
                      |+|+|||++|+++|||||++++  ++|++||+++|++|++|++++|++++|..++++|+++|++++++||+++||||+++
T Consensus       107 G~a~GgG~~lalacD~ria~~~--a~f~~pe~~~Gl~p~~g~~~~L~~~vg~~~a~~l~ltg~~~~a~eA~~~Glv~~vv  184 (260)
T PRK07659        107 GPAAGLGLSIALTADYVIADIS--AKLAMNFIGIGLIPDGGGHFFLQKRVGENKAKQIIWEGKKLSATEALDLGLIDEVI  184 (260)
T ss_pred             CceecHHHHHHHhCCEEEEcCC--CEEcCchhhcCCCCCCchhhhHHHhcCHHHHHHHHHhCCccCHHHHHHcCChHHHh
Confidence            6899999999999999999998  99999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccccccCCCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHhhCCCCCcH
Q psy9056          81 EPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAP  160 (359)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (359)
                       +             +++.+.+.+++++++..|+.                                           +.
T Consensus       185 -~-------------~~~~~~a~~~a~~l~~~~~~-------------------------------------------a~  207 (260)
T PRK07659        185 -G-------------GDFQTAAKQKISEWLQKPLK-------------------------------------------AM  207 (260)
T ss_pred             -h-------------hHHHHHHHHHHHHHHhCCHH-------------------------------------------HH
Confidence             6             77999999999999988762                                           22


Q ss_pred             HHHHHHHHHhhccChhhHHHHHHHHhhhhhcChhhHHHHHhHhhhhhhhhc
Q psy9056         161 LKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQTECKKN  211 (359)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~s~~~~~~~~af~~k~~~~~~  211 (359)
                      ..+|+.++.....++++.++.|.+.+..++.++|+++++.+|++||+|++.
T Consensus       208 ~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~~~~egi~af~~kr~p~~~  258 (260)
T PRK07659        208 IETKQIYCELNRSQLEQVLQLEKRAQYAMRQTADHKEGIRAFLEKRLPVFK  258 (260)
T ss_pred             HHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCHhHHHHHHHHhcCCCCCCC
Confidence            346667777777889999999999999999999999999999999998763

>PLN03214 probable enoyl-CoA hydratase/isomerase; Provisional

Probab=99.96  E-value=4.4e-28  Score=227.24  Aligned_cols=155  Identities=21%  Similarity=0.286  Sum_probs=141.1

Q ss_pred             CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCC-CCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCccee
Q psy9056           1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGL-LPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQL   79 (359)
Q Consensus         1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi-~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~   79 (359)
                      |.|+|||++|+++|||||++++  ++|++||+++|+ +|+++++++|++++|..++++|++||+.++++||+++||||++
T Consensus       116 G~a~GgG~~lalacD~ria~~~--a~f~~pe~~lGl~~p~~~~~~~l~~~~G~~~a~~llltg~~~~a~eA~~~Glv~~v  193 (278)
T PLN03214        116 GACPAGGCAVSLCCDYRLQTTE--GTMGLNEVALGIPVPKFWARLFMGRVIDRKVAESLLLRGRLVRPAEAKQLGLIDEV  193 (278)
T ss_pred             CcccchHHHHHHhCCEEEecCC--CEecCcHHHhCCCCCChhHHHHHHHhcCHHHHHHHHHcCCccCHHHHHHcCCCcEe
Confidence            6899999999999999999988  999999999999 5999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccccccCCCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHhhCCCCCc
Q psy9056          80 VEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPA  159 (359)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (359)
                      +|+             +++++.+.+++.+++..++.                                           +
T Consensus       194 v~~-------------~~l~~~a~~~a~~l~~~~~~-------------------------------------------a  217 (278)
T PLN03214        194 VPA-------------AALMEAAASAMERALKLPSA-------------------------------------------A  217 (278)
T ss_pred             cCh-------------HHHHHHHHHHHHHHHcCCHH-------------------------------------------H
Confidence            998             88999999999999988762                                           2


Q ss_pred             HHHHHHHHHHhhccChhhHHHHHHHHhhhhhcChhhHHHHHhHhhhhhhhhcCC
Q psy9056         160 PLKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQTECKKNRL  213 (359)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~s~~~~~~~~af~~k~~~~~~~~  213 (359)
                      ...+|+.++.....+++++++.|.+.+..++.|+|+++++.+|++|.+.|+.+.
T Consensus       218 ~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~d~~egi~aflek~~~~~~~~  271 (278)
T PLN03214        218 RAATKALLREEFSAAWEAYYEEEAKGGWKMLSEPSIIKALGGVMERLSSGKEKK  271 (278)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhccccc
Confidence            224666777776778899999999999999999999999999999999877544

>TIGR01929 menB naphthoate synthase (dihydroxynaphthoic acid synthetase)

Probab=99.95  E-value=2.6e-28  Score=226.73  Aligned_cols=153  Identities=15%  Similarity=0.206  Sum_probs=133.9

Q ss_pred             CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceec
Q psy9056           1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLV   80 (359)
Q Consensus         1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~   80 (359)
                      |.|+|||++|+++|||||++++  ++|++||+++|++|++|++.+|++++|..++++|+++|++++++||+++||||+++
T Consensus       106 G~a~GgG~~lalacD~~ia~~~--a~f~~pe~~~G~~p~~~~~~~l~~~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv  183 (259)
T TIGR01929       106 GYAIGGGHVLHVVCDLTIAAEN--ARFGQTGPKVGSFDGGYGSSYLARIVGQKKAREIWFLCRQYDAEQALDMGLVNTVV  183 (259)
T ss_pred             CEEehHHHHHHHhCCEEEecCC--CEecCcccccccCCCccHHHHHHHHhHHHHHHHHHHhCCccCHHHHHHcCCccccc
Confidence            6899999999999999999988  99999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccccccCCCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHhhCCCCCcH
Q psy9056          81 EPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAP  160 (359)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (359)
                      |+             +++.+.+.+++++++..|+...+                                          
T Consensus       184 ~~-------------~~l~~~a~~~a~~la~~~~~a~~------------------------------------------  208 (259)
T TIGR01929       184 PL-------------ADLEKETVRWCREILQKSPMAIR------------------------------------------  208 (259)
T ss_pred             CH-------------HHHHHHHHHHHHHHHhCCHHHHH------------------------------------------
Confidence            98             89999999999999998873222                                          


Q ss_pred             HHHHHHHHHhhccChhhHHHHHHHHhhhhhcChhhHHHHHhHhhhhhhhhcC
Q psy9056         161 LKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQTECKKNR  212 (359)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~s~~~~~~~~af~~k~~~~~~~  212 (359)
                       .+|++++.... ........|.+.+..++.++|+++++.+|++||+|++.+
T Consensus       209 -~~K~~l~~~~~-~~~~~~~~e~~~~~~~~~~~d~~egi~af~~kr~p~~~~  258 (259)
T TIGR01929       209 -MLKAALNADCD-GQAGLQELAGNATMLFYMTEEGQEGRNAFLEKRQPDFSK  258 (259)
T ss_pred             -HHHHHHHhhhc-cchHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCCCCC
Confidence             34455554332 234555667788889999999999999999999988743

This model represents an enzyme, naphthoate synthase (dihydroxynaphthoic acid synthetase), which is involved in the fifth step of the menaquinone biosynthesis pathway. Together with o-succinylbenzoate-CoA ligase (menE: TIGR01923), this enzyme takes 2-succinylbenzoate and converts it into 1,4-di-hydroxy-2-naphthoate. Included above the trusted cutoff are two enzymes from Arabadopsis thaliana and one from Staphylococcus aureus which are identified as putative enoyl-CoA hydratase/isomerases. These enzymes group with the naphthoate synthases when building a tree and when doing BLAST searches.

>PRK08139 enoyl-CoA hydratase; Validated

Probab=99.95  E-value=5.2e-28  Score=225.55  Aligned_cols=152  Identities=16%  Similarity=0.222  Sum_probs=139.1

Q ss_pred             CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceec
Q psy9056           1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLV   80 (359)
Q Consensus         1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~   80 (359)
                      |+|+|||++|+++|||||++++  ++|++||+++|++|+++ +++|++++|..++++|+++|++++++||+++||||+++
T Consensus       113 G~a~GgG~~lalacD~ria~~~--a~f~~pe~~~Gl~p~~~-~~~l~r~vG~~~A~~l~ltg~~~~a~eA~~~GLv~~vv  189 (266)
T PRK08139        113 GIATAAGCQLVASCDLAVAADT--ARFAVPGVNIGLFCSTP-MVALSRNVPRKQAMEMLLTGEFIDAATAREWGLVNRVV  189 (266)
T ss_pred             ceeeHHHHHHHHhCCEEEEeCC--CEEeCcccCcCCCCCcc-HHHHHHHhCHHHHHHHHHcCCccCHHHHHHcCCccEee
Confidence            6899999999999999999998  99999999999999865 56899999999999999999999999999999999999


Q ss_pred             CCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccccccCCCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHhhCCCCCcH
Q psy9056          81 EPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAP  160 (359)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (359)
                      |+             +++.+.+.+++++++..++.                                           +.
T Consensus       190 ~~-------------~~l~~~a~~~a~~la~~~~~-------------------------------------------a~  213 (266)
T PRK08139        190 PA-------------DALDAAVARLAAVIAAKSPA-------------------------------------------AV  213 (266)
T ss_pred             Ch-------------hHHHHHHHHHHHHHHhCCHH-------------------------------------------HH
Confidence            98             88999999999999998773                                           22


Q ss_pred             HHHHHHHHHhhccChhhHHHHHHHHhhhhhcChhhHHHHHhHhhhhhhhhc
Q psy9056         161 LKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQTECKKN  211 (359)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~s~~~~~~~~af~~k~~~~~~  211 (359)
                      ..+|+.++.....+++++++.|.+.+..++.++|+++++++|++||+|++.
T Consensus       214 ~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~~kr~p~~~  264 (266)
T PRK08139        214 RIGKEAFYRQAEMPLADAYAYAGDVMAENMMAEDAEEGIDAFLEKRPPEWR  264 (266)
T ss_pred             HHHHHHHHHhccCCHHHHHHHHHHHHHHHhcCchHHHHHHHHhcCCCCCCC
Confidence            356677787777889999999999999999999999999999999988763

>PRK06143 enoyl-CoA hydratase; Provisional

Probab=99.95  E-value=5.7e-28  Score=224.06  Aligned_cols=148  Identities=24%  Similarity=0.309  Sum_probs=136.3

Q ss_pred             CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceec
Q psy9056           1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLV   80 (359)
Q Consensus         1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~   80 (359)
                      |+|+|||++|+++|||||++++  ++|++||+++|+ |+++++++|++++|..++++|+++|++++++||+++||||+++
T Consensus       109 G~a~GgG~~lalacD~~ia~~~--a~f~~pe~~~G~-p~~~~~~~l~~~iG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv  185 (256)
T PRK06143        109 GWCLGGGLELAAACDLRIAAHD--AQFGMPEVRVGI-PSVIHAALLPRLIGWARTRWLLLTGETIDAAQALAWGLVDRVV  185 (256)
T ss_pred             CEEeehhHHHHHhCCEEEecCC--CEEeCCccccCC-CCccHHHHHHHhcCHHHHHHHHHcCCcCCHHHHHHCCCcCeec
Confidence            6899999999999999999988  999999999998 8888899999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccccccCCCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHhhCCCCCcH
Q psy9056          81 EPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAP  160 (359)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (359)
                      |+             +++.+.+.+++++++..|+.                                           +.
T Consensus       186 ~~-------------~~l~~~a~~~a~~la~~~~~-------------------------------------------a~  209 (256)
T PRK06143        186 PL-------------AELDAAVERLAASLAGCGPQ-------------------------------------------AL  209 (256)
T ss_pred             CH-------------HHHHHHHHHHHHHHHcCCHH-------------------------------------------HH
Confidence            98             89999999999999998873                                           22


Q ss_pred             HHHHHHHHHhhccChhhHHHHHHHHhhhhhcChhhHHHHHhHhhhhh
Q psy9056         161 LKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQTE  207 (359)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~s~~~~~~~~af~~k~~  207 (359)
                      ..+|+.++.....++++.++.|.+.+..++.++|+++++++|++||+
T Consensus       210 ~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~d~~e~~~af~ekr~  256 (256)
T PRK06143        210 RQQKRLLREWEDMPLDVAIDDSVAEFGAAFLTGEPQRHMAAFLNRKR  256 (256)
T ss_pred             HHHHHHHHHHccCCHHHHHHHHHHHHHHHhcChHHHHHHHHHHhhcC
Confidence            34667777777788999999999999999999999999999999974

>PRK05981 enoyl-CoA hydratase; Provisional

Probab=99.95  E-value=4.5e-28  Score=226.17  Aligned_cols=153  Identities=22%  Similarity=0.217  Sum_probs=140.7

Q ss_pred             CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceec
Q psy9056           1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLV   80 (359)
Q Consensus         1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~   80 (359)
                      |.|+|||++|+++||||||+++  ++|++||+++|++|++|++++|++++|..++++|+++|++++++||+++|||++++
T Consensus       112 G~a~GgG~~lalacD~~ia~~~--a~f~~~e~~lG~~p~~g~~~~l~~~vg~~~a~~l~l~g~~~~a~eA~~~Glv~~vv  189 (266)
T PRK05981        112 GPAAGVGMSFALMGDLILCARS--AYFLQAFRRIGLVPDGGSTWLLPRLVGKARAMELSLLGEKLPAETALQWGLVNRVV  189 (266)
T ss_pred             CEeehHHHHHHHhCCEEEecCC--CEEechHhhcCCCCCccHHHHHHHHhHHHHHHHHHHhCCCcCHHHHHHcCCceEee
Confidence            6799999999999999999998  99999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccccccCCCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHhhCCCCCcH
Q psy9056          81 EPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAP  160 (359)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (359)
                      |+             +++.+.+.++++++++.|+.                                           +.
T Consensus       190 ~~-------------~~~~~~a~~~a~~l~~~~~~-------------------------------------------a~  213 (266)
T PRK05981        190 DD-------------AELMAEAMKLAHELANGPTV-------------------------------------------AL  213 (266)
T ss_pred             CH-------------hHHHHHHHHHHHHHHcCCHH-------------------------------------------HH
Confidence            98             88999999999999987762                                           22


Q ss_pred             HHHHHHHHHhhccChhhHHHHHHHHhhhhhcChhhHHHHHhHhhhhhhhhc
Q psy9056         161 LKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQTECKKN  211 (359)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~s~~~~~~~~af~~k~~~~~~  211 (359)
                      ..+|+++++....++++.++.|...+..++.|+|+++++.+|++||+|++.
T Consensus       214 ~~~K~~~~~~~~~~~~~~~~~e~~~~~~~~~s~d~~e~~~af~~kr~~~~~  264 (266)
T PRK05981        214 GLIRKLYWDSPENDFEEQLNLEREAQRIAGKTEDFKEGVGAFLQKRPAQFK  264 (266)
T ss_pred             HHHHHHHHHhhhcCHHHHHHHHHHHHHHHhcChhHHHHHHHHhcCCCCCCC
Confidence            245667777777889999999999999999999999999999999998763

>PRK06688 enoyl-CoA hydratase; Provisional

Probab=99.95  E-value=5.1e-28  Score=224.95  Aligned_cols=152  Identities=26%  Similarity=0.340  Sum_probs=140.0

Q ss_pred             CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceec
Q psy9056           1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLV   80 (359)
Q Consensus         1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~   80 (359)
                      |+|+|||++|+++|||||++++  ++|++||+++|++|++|+++++++++|..++++|+++|++++++||+++||||+++
T Consensus       105 G~a~GgG~~lal~cD~ria~~~--a~f~~pe~~~G~~p~~g~~~~l~~~~G~~~a~~l~l~g~~~~a~eA~~~Glv~~v~  182 (259)
T PRK06688        105 GPAVGVGVSLALACDLVYASES--AKFSLPFAKLGLCPDAGGSALLPRLIGRARAAEMLLLGEPLSAEEALRIGLVNRVV  182 (259)
T ss_pred             CeeecHHHHHHHhCCEEEecCC--CEecCchhhcCCCCCcchhhHHHHHhhHHHHHHHHHhCCccCHHHHHHcCCcceec
Confidence            6899999999999999999988  99999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccccccCCCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHhhCCCCCcH
Q psy9056          81 EPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAP  160 (359)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (359)
                      |+             +++.+.+.+++++++..++..                                           .
T Consensus       183 ~~-------------~~l~~~a~~~a~~i~~~~~~a-------------------------------------------~  206 (259)
T PRK06688        183 PA-------------AELDAEADAQAAKLAAGPASA-------------------------------------------L  206 (259)
T ss_pred             CH-------------HHHHHHHHHHHHHHHhCCHHH-------------------------------------------H
Confidence            98             889999999999999877621                                           2


Q ss_pred             HHHHHHHHHhhccChhhHHHHHHHHhhhhhcChhhHHHHHhHhhhhhhhh
Q psy9056         161 LKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQTECKK  210 (359)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~s~~~~~~~~af~~k~~~~~  210 (359)
                      ..+|+.++.....++++++..|.+.+..++.++++++++++|++||+|++
T Consensus       207 ~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~af~~~~~p~~  256 (259)
T PRK06688        207 RYTKRAINAATLTELEEALAREAAGFGRLLRTPDFREGATAFIEKRKPDF  256 (259)
T ss_pred             HHHHHHHHhhhhCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCCCC
Confidence            24566677777788999999999999999999999999999999998876

>PRK06210 enoyl-CoA hydratase; Provisional

Probab=99.95  E-value=4.5e-28  Score=226.87  Aligned_cols=153  Identities=20%  Similarity=0.202  Sum_probs=139.6

Q ss_pred             CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceec
Q psy9056           1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLV   80 (359)
Q Consensus         1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~   80 (359)
                      |.|+|||++|+++||+||++++  ++|++||+++|++|++|++++|++++|..++++|++||++++++||+++||||+++
T Consensus       117 G~a~GgG~~lala~D~~ia~~~--a~f~~pe~~~Gl~p~~g~~~~l~~~ig~~~a~~l~ltg~~~~a~eA~~~Glv~~vv  194 (272)
T PRK06210        117 GACAGIGLTHALMCDVRFAADG--AKFTTAFARRGLIAEHGISWILPRLVGHANALDLLLSARTFYAEEALRLGLVNRVV  194 (272)
T ss_pred             CeeehHHHHHHHhCCEEEEeCC--CEEechHHhcCCCCCCchhhhhHhhhCHHHHHHHHHcCCccCHHHHHHcCCcceec
Confidence            6899999999999999999998  99999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCcchhhHHHHHHHHHHHHHHHhcC-ccccccCCCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHhhCCCCCc
Q psy9056          81 EPLGPGLNHPEERTMEYLEEVAVNTASQLASG-KLKINRTKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPA  159 (359)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~-~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (359)
                      |+             +++.+.+.++++++++. ++.                                           +
T Consensus       195 ~~-------------~~l~~~a~~~a~~i~~~~~p~-------------------------------------------a  218 (272)
T PRK06210        195 PP-------------DELMERTLAYAEDLARNVSPA-------------------------------------------S  218 (272)
T ss_pred             CH-------------HHHHHHHHHHHHHHHhcCCHH-------------------------------------------H
Confidence            98             88999999999999974 552                                           2


Q ss_pred             HHHHHHHHHHhhccChhhHHHHHHHHhhhhhcChhhHHHHHhHhhhhhhhhc
Q psy9056         160 PLKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQTECKKN  211 (359)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~s~~~~~~~~af~~k~~~~~~  211 (359)
                      ...+|+.++.....++++.++.|.+.+..++.+++++|++.+|++||+|.+.
T Consensus       219 ~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~~~~egi~af~~kr~p~~~  270 (272)
T PRK06210        219 MAVIKRQLYEDAFQTLAEATARANREMHESLQRPDFIEGVASFLEKRPPRFP  270 (272)
T ss_pred             HHHHHHHHHhcccCCHHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCCCC
Confidence            2245666777767889999999999999999999999999999999987763

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=99.95  E-value=9.2e-28  Score=211.05  Aligned_cols=138  Identities=35%  Similarity=0.549  Sum_probs=125.7

Q ss_pred             EEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcCCCCCcc
Q psy9056         222 TVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPFKNAD  301 (359)
Q Consensus       222 kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~aD  301 (359)
                      ||+|||+|.||.+||..++.+|++|++||++++.++.+.++++..++...+.+.+++......++++++++|++++.+||
T Consensus         1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl~~~~~ad   80 (180)
T PF02737_consen    1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFTTDLEEAVDAD   80 (180)
T ss_dssp             EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEESSGGGGCTES
T ss_pred             CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccccCHHHHhhhh
Confidence            69999999999999999999999999999999999999999999999999999999999999999999999998777999


Q ss_pred             EEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCcHHHHHhhcCCCCcEEeecCC
Q psy9056         302 MVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPITKIAAASKRPDKVRNMGRI  359 (359)
Q Consensus       302 ~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~rvig~h~~  359 (359)
                      +||||+||+.++|+++|++|.+++++++||+||||+++++++++.+.+|+|++|+|||
T Consensus        81 lViEai~E~l~~K~~~~~~l~~~~~~~~ilasnTSsl~i~~la~~~~~p~R~ig~Hf~  138 (180)
T PF02737_consen   81 LVIEAIPEDLELKQELFAELDEICPPDTILASNTSSLSISELAAALSRPERFIGMHFF  138 (180)
T ss_dssp             EEEE-S-SSHHHHHHHHHHHHCCS-TTSEEEE--SSS-HHHHHTTSSTGGGEEEEEE-
T ss_pred             eehhhccccHHHHHHHHHHHHHHhCCCceEEecCCCCCHHHHHhccCcCceEEEEecc
Confidence            9999999999999999999999999999999999999999999999999999999997

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>PRK05995 enoyl-CoA hydratase; Provisional

Probab=99.95  E-value=8.8e-28  Score=223.71  Aligned_cols=152  Identities=18%  Similarity=0.166  Sum_probs=136.7

Q ss_pred             CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceec
Q psy9056           1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLV   80 (359)
Q Consensus         1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~   80 (359)
                      |+|+|||++|+++|||||++++  ++|++||+++|++|++|++ ++++++|..++++|+++|++++++||+++||||+++
T Consensus       108 G~a~GgG~~lalacD~ria~~~--a~f~~pe~~~Gl~p~~g~~-~l~~~vg~~~a~~l~l~g~~~~a~eA~~~Glv~~vv  184 (262)
T PRK05995        108 GDAYAGGMGLVAACDIAVAADH--AVFCLSEVRLGLIPATISP-YVIRAMGERAARRYFLTAERFDAAEALRLGLVHEVV  184 (262)
T ss_pred             CEEEhhHHHHHHhCCEEEeeCC--CEEeCcccccccCccchHH-HHHHHhCHHHHHHHHHcCCccCHHHHHHcCCCCeec
Confidence            6899999999999999999998  9999999999999998765 588999999999999999999999999999999999


Q ss_pred             CCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccccccCCCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHhhCCCCCcH
Q psy9056          81 EPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAP  160 (359)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (359)
                      |+             +++.+.+.+++++++..|+.                                           +.
T Consensus       185 ~~-------------~~l~~~a~~~a~~la~~~~~-------------------------------------------a~  208 (262)
T PRK05995        185 PA-------------EALDAKVDELLAALVANSPQ-------------------------------------------AV  208 (262)
T ss_pred             CH-------------HHHHHHHHHHHHHHHhCCHH-------------------------------------------HH
Confidence            98             88999999999999988762                                           22


Q ss_pred             HHHHHHHHHhhccChhhH-HHHHHHHhhhhhcChhhHHHHHhHhhhhhhhhc
Q psy9056         161 LKILDVVRTGIEKGPSAG-YEAEAEGFSQLAMTPQSKGLMGLFRAQTECKKN  211 (359)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~-~~~e~~~~~~~~~s~~~~~~~~af~~k~~~~~~  211 (359)
                      ..+|+.++.....++++. ++.|...+..++.++|+++++.+|++||+|+|.
T Consensus       209 ~~~K~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~d~~e~~~af~~kr~p~~~  260 (262)
T PRK05995        209 RAGKRLVRDVAGRPIDAALIADTASRIALIRATEEAREGVAAFLEKRKPAWR  260 (262)
T ss_pred             HHHHHHHHhhhcCChhhHHHHHHHHHHHHHhcCHHHHHHHHHHhcCCCCCCC
Confidence            345666777667788888 888889999999999999999999999998763

>PRK07468 enoyl-CoA hydratase; Provisional

Probab=99.95  E-value=1.2e-27  Score=222.72  Aligned_cols=152  Identities=17%  Similarity=0.155  Sum_probs=135.4

Q ss_pred             CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceec
Q psy9056           1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLV   80 (359)
Q Consensus         1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~   80 (359)
                      |+|+|||++|+++||+||++++  ++|++||+++|++|++|+++++ +++|..++++|+++|++++++||+++||||+++
T Consensus       109 G~a~GgG~~lala~D~ria~~~--a~f~~pe~~~Gl~p~~g~~~~~-~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~  185 (262)
T PRK07468        109 GQAFGGGVGLISVCDVAIAVSG--ARFGLTETRLGLIPATISPYVV-ARMGEANARRVFMSARLFDAEEAVRLGLLSRVV  185 (262)
T ss_pred             CEEEhHHHHHHHhCCEEEEeCC--CEEeCchhccCCCcccchhhHH-hhccHHHHHHHHHhCCccCHHHHHHcCCcceec
Confidence            6899999999999999999998  9999999999999999998755 559999999999999999999999999999999


Q ss_pred             CCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccccccCCCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHhhCCCCCcH
Q psy9056          81 EPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAP  160 (359)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (359)
                      |.             +++.+.+.+++++++..++..                                           .
T Consensus       186 ~~-------------~~l~~~~~~~a~~l~~~~~~a-------------------------------------------~  209 (262)
T PRK07468        186 PA-------------ERLDAAVEAEVTPYLSCAPGA-------------------------------------------V  209 (262)
T ss_pred             CH-------------HHHHHHHHHHHHHHHhcCHHH-------------------------------------------H
Confidence            98             889999999999999887632                                           2


Q ss_pred             HHHHHHHHHhhccChhhHHHHHHHHhhhhhcChhhHHHHHhHhhhhhhhhc
Q psy9056         161 LKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQTECKKN  211 (359)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~s~~~~~~~~af~~k~~~~~~  211 (359)
                      ..+|++++......+++.++.|.+.+..++.|+|+++++.+|++||+|+|.
T Consensus       210 ~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~s~d~~e~~~af~~kr~~~~~  260 (262)
T PRK07468        210 AAAKALVRALGAPIDEAVIDATIEALADTWETEEAREGIAAFFDKRAPAWR  260 (262)
T ss_pred             HHHHHHHHhhhccChHHHHHHHHHHHHHHhcCHHHHHHHHHHHcCCCCCCC
Confidence            245566665555567888999999999999999999999999999998763

>PRK07396 dihydroxynaphthoic acid synthetase; Validated

Probab=99.95  E-value=1.3e-27  Score=223.64  Aligned_cols=153  Identities=16%  Similarity=0.202  Sum_probs=133.9

Q ss_pred             CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceec
Q psy9056           1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLV   80 (359)
Q Consensus         1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~   80 (359)
                      |.|+|||++|+++|||||++++  ++|++||+++|++|+++++.+|++++|..++++|++||++++++||+++||||+++
T Consensus       116 G~a~GgG~~lalacD~ria~~~--a~f~~pe~~~Gl~p~~~~~~~l~~~vG~~~a~~l~ltg~~~~A~eA~~~GLv~~vv  193 (273)
T PRK07396        116 GYAIGGGHVLHLVCDLTIAADN--AIFGQTGPKVGSFDGGYGASYLARIVGQKKAREIWFLCRQYDAQEALDMGLVNTVV  193 (273)
T ss_pred             CEEehHHHHHHHhCCEEEeeCC--cEEecccccccccCCchHHHHHHHHhhHHHHHHHHHhCCCcCHHHHHHcCCcCeec
Confidence            6799999999999999999998  99999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccccccCCCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHhhCCCCCcH
Q psy9056          81 EPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAP  160 (359)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (359)
                      |+             +++++.+.+++++|++.++...+                                          
T Consensus       194 ~~-------------~~l~~~a~~~a~~la~~~~~a~~------------------------------------------  218 (273)
T PRK07396        194 PL-------------ADLEKETVRWCREMLQNSPMALR------------------------------------------  218 (273)
T ss_pred             CH-------------HHHHHHHHHHHHHHHhCCHHHHH------------------------------------------
Confidence            98             89999999999999998873222                                          


Q ss_pred             HHHHHHHHHhhccChhhHHHHHHHHhhhhhcChhhHHHHHhHhhhhhhhhcC
Q psy9056         161 LKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQTECKKNR  212 (359)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~s~~~~~~~~af~~k~~~~~~~  212 (359)
                       .+|+.++.... ..+...+.|.+.+..++.++|+++++.+|++||+|++.+
T Consensus       219 -~~K~~l~~~~~-~~~~~~~~e~~~~~~~~~~~d~~egi~af~~kr~p~~~~  268 (273)
T PRK07396        219 -CLKAALNADCD-GQAGLQELAGNATMLFYMTEEAQEGRNAFNEKRQPDFSK  268 (273)
T ss_pred             -HHHHHHHhhhc-cHHHHHHHHHHHHHHHhcChhHHHHHHHHhCCCCCCCCC
Confidence             34445554322 344455567788889999999999999999999988754

>PRK09120 p-hydroxycinnamoyl CoA hydratase/lyase; Validated

Probab=99.95  E-value=2e-27  Score=222.57  Aligned_cols=149  Identities=17%  Similarity=0.177  Sum_probs=134.8

Q ss_pred             CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceec
Q psy9056           1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLV   80 (359)
Q Consensus         1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~   80 (359)
                      |+|+|||++|+++||+||++++  ++|++||+++|++|++|++++|++++|..++++|++||++++++||+++|||++++
T Consensus       113 G~a~GgG~~lal~cD~~ia~~~--a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~a~~llltg~~~~A~eA~~~Glv~~vv  190 (275)
T PRK09120        113 GWCFGGGFSPLVACDLAIAADE--AQFGLSEINWGIPPGGGVSKAMADTVGHRDALYYIMTGETFTGRKAAEMGLVNESV  190 (275)
T ss_pred             CEEechhHHHHHhCCEEEEeCC--cEecCCccccCCCCCcchHHHHHHHcCHHHHHHHHhcCCccCHHHHHHcCCcceec
Confidence            6899999999999999999998  99999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccccccCCCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHhhCCCCCcH
Q psy9056          81 EPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAP  160 (359)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (359)
                      |+             +++++.+.+++++|+..|+..                                           .
T Consensus       191 ~~-------------~~l~~~a~~~a~~la~~~p~a-------------------------------------------~  214 (275)
T PRK09120        191 PL-------------AQLRARTRELAAKLLEKNPVV-------------------------------------------L  214 (275)
T ss_pred             CH-------------HHHHHHHHHHHHHHHhCCHHH-------------------------------------------H
Confidence            98             899999999999999987732                                           2


Q ss_pred             HHHHHHHHHhhccChhhHHHHHHH--HhhhhhcCh-hhHHHHHhHhhhhh
Q psy9056         161 LKILDVVRTGIEKGPSAGYEAEAE--GFSQLAMTP-QSKGLMGLFRAQTE  207 (359)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~e~~--~~~~~~~s~-~~~~~~~af~~k~~  207 (359)
                      ..+|+.++.....++++.++.|.+  .+..++.++ |+++|+++|++||.
T Consensus       215 ~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~d~~eg~~afl~kr~  264 (275)
T PRK09120        215 RAAKDGFKRVRELTWDQAEDYLYAKLEQANSLDPEGGREEGLKQFLDDKS  264 (275)
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhccc
Confidence            246677777777888899888764  355678898 89999999999998

>TIGR03210 badI 2-ketocyclohexanecarboxyl-CoA hydrolase

Probab=99.95  E-value=2.1e-27  Score=220.36  Aligned_cols=152  Identities=13%  Similarity=0.121  Sum_probs=129.3

Q ss_pred             CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceec
Q psy9056           1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLV   80 (359)
Q Consensus         1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~   80 (359)
                      |+|+|||++|+++||+||++++  ++|++||+++|++|+++++++|++++|..+|++|+++|++++|+||+++||||+++
T Consensus       103 G~a~GgG~~lal~cD~~ia~~~--a~f~~pe~~~G~~~~~~~~~~l~~~vG~~~A~~lll~g~~~~a~eA~~~Glv~~vv  180 (256)
T TIGR03210       103 GYAIGGGNVLVTICDLTIASEK--AQFGQVGPKVGSVDPGYGTALLARVVGEKKAREIWYLCRRYTAQEALAMGLVNAVV  180 (256)
T ss_pred             CEEehhhHHHHHhCCEEEEeCC--CEEecccccccccCCccHHHHHHHHhCHHHHHHHHHhCCCcCHHHHHHcCCceeee
Confidence            6899999999999999999988  99999999999998888899999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccccccCCCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHhhCCCCCcH
Q psy9056          81 EPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAP  160 (359)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (359)
                      |+             +++.+.+.++++++++.|+...                                           
T Consensus       181 ~~-------------~~l~~~a~~~a~~ia~~~~~a~-------------------------------------------  204 (256)
T TIGR03210       181 PH-------------DQLDAEVQKWCDEIVEKSPTAI-------------------------------------------  204 (256)
T ss_pred             CH-------------HHHHHHHHHHHHHHHhCCHHHH-------------------------------------------
Confidence            98             8999999999999999887322                                           


Q ss_pred             HHHHHHHHHhhccChhhHH-HHHHHHhhhhhcChhhHHHHHhHhhhhhhhhcC
Q psy9056         161 LKILDVVRTGIEKGPSAGY-EAEAEGFSQLAMTPQSKGLMGLFRAQTECKKNR  212 (359)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~-~~e~~~~~~~~~s~~~~~~~~af~~k~~~~~~~  212 (359)
                      ..+|++++......  ... ..|.+.+..++.++|+++++.+|++||+|++.+
T Consensus       205 ~~~K~~l~~~~~~~--~~~~~~~~~~~~~~~~~~d~~e~~~af~~kr~p~~~~  255 (256)
T TIGR03210       205 AIAKRSFNMDTAHQ--RGIAGMGMYALKLYYDTAESREGVKAFQEKRKPEFRK  255 (256)
T ss_pred             HHHHHHHHHhhccc--chHHHHHHHHHHHHccChhHHHHHHHHhccCCCCCCC
Confidence            23445555433221  111 124567778899999999999999999988753

Members of this protein family are 2-ketocyclohexanecarboxyl-CoA hydrolase, a ring-opening enzyme that acts in catabolism of molecules such as benzoyl-CoA and cyclohexane carboxylate. It converts -ketocyclohexanecarboxyl-CoA to pimelyl-CoA. It is not sensitive to oxygen.

>PRK07260 enoyl-CoA hydratase; Provisional

Probab=99.95  E-value=2e-27  Score=220.37  Aligned_cols=149  Identities=25%  Similarity=0.249  Sum_probs=138.0

Q ss_pred             CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceec
Q psy9056           1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLV   80 (359)
Q Consensus         1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~   80 (359)
                      |.|+|||++|+++|||||++++  ++|++||+++|++|++|++++|++++|..++++|+++|++++++||+++||||+++
T Consensus       107 G~a~GgG~~lala~D~ria~~~--a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~~l~l~g~~~sa~eA~~~Glv~~vv  184 (255)
T PRK07260        107 GAVAGAAANMAVAADFCIASTK--TKFIQAFVGVGLAPDAGGLFLLTRAIGLNRATHLAMTGEALTAEKALEYGFVYRVA  184 (255)
T ss_pred             CeeehhhHHHHHhCCEEEEeCC--CEEechHhhcCCCCCCchhhhhHHhhCHHHHHHHHHhCCccCHHHHHHcCCcceec
Confidence            6799999999999999999998  99999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccccccCCCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHhhCCCCCcH
Q psy9056          81 EPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAP  160 (359)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (359)
                      |+             +++.+.+.++++++++.++.                                           +.
T Consensus       185 ~~-------------~~l~~~a~~~a~~la~~~~~-------------------------------------------a~  208 (255)
T PRK07260        185 ES-------------EKLEKTCEQLLKKLRRGSSN-------------------------------------------SY  208 (255)
T ss_pred             CH-------------hHHHHHHHHHHHHHHcCCHH-------------------------------------------HH
Confidence            98             88999999999999988762                                           22


Q ss_pred             HHHHHHHHHhhccChhhHHHHHHHHhhhhhcChhhHHHHHhHhhhhh
Q psy9056         161 LKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQTE  207 (359)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~s~~~~~~~~af~~k~~  207 (359)
                      ..+|+.++.....++++.+..|.+.+..++.|+|+++++.+|++||+
T Consensus       209 ~~~K~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr~  255 (255)
T PRK07260        209 AAIKSLVWESFFKGWEDYAKLELALQESLAFKEDFKEGVRAFSERRR  255 (255)
T ss_pred             HHHHHHHHHHhhcCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCC
Confidence            35667777777788999999999999999999999999999999874

>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]

Probab=99.95  E-value=2.9e-27  Score=221.33  Aligned_cols=142  Identities=40%  Similarity=0.620  Sum_probs=138.0

Q ss_pred             CCccEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcCCC
Q psy9056         218 TPVKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPF  297 (359)
Q Consensus       218 ~~~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l  297 (359)
                      +.+++|+|||+|.||.+||..++..||+|+++|++++.++.+...+...+++..+.|++++...+..+.++++++++.++
T Consensus         1 ~~i~kv~ViGaG~MG~gIA~~~A~~G~~V~l~D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~~l~~i~~~~~~~~l   80 (307)
T COG1250           1 MEIKKVAVIGAGVMGAGIAAVFALAGYDVVLKDISPEALERALAYIEKNLEKLVEKGKLTEEEADAALARITPTTDLAAL   80 (307)
T ss_pred             CCccEEEEEcccchhHHHHHHHhhcCCceEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHhhccccCchhHh
Confidence            46899999999999999999999988999999999999999999999999999999999999999999999999999999


Q ss_pred             CCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCcHHHHHhhcCCCCcEEeecCC
Q psy9056         298 KNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPITKIAAASKRPDKVRNMGRI  359 (359)
Q Consensus       298 ~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~rvig~h~~  359 (359)
                      ++||+|||++||+.++|+.+|+++.+++++++|+.||||+++++.+++.+.+|+||+|+|||
T Consensus        81 ~~~DlVIEAv~E~levK~~vf~~l~~~~~~~aIlASNTSsl~it~ia~~~~rper~iG~HFf  142 (307)
T COG1250          81 KDADLVIEAVVEDLELKKQVFAELEALAKPDAILASNTSSLSITELAEALKRPERFIGLHFF  142 (307)
T ss_pred             ccCCEEEEeccccHHHHHHHHHHHHhhcCCCcEEeeccCCCCHHHHHHHhCCchhEEEEecc
Confidence            99999999999999999999999999999999999999999999999999999999999998

>PRK05674 gamma-carboxygeranoyl-CoA hydratase; Validated

Probab=99.95  E-value=1.6e-27  Score=222.13  Aligned_cols=152  Identities=14%  Similarity=0.125  Sum_probs=134.7

Q ss_pred             CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceec
Q psy9056           1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLV   80 (359)
Q Consensus         1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~   80 (359)
                      |+|+|||++|+++|||||++++  ++|++||+++|++|+++++ ++++++|.+++++|++||+.++++||+++||||+++
T Consensus       110 G~a~GgG~~lal~~D~~ia~~~--a~f~~pe~~~Gi~p~~~~~-~l~~~vG~~~a~~l~ltg~~~~a~eA~~~Glv~~vv  186 (265)
T PRK05674        110 GAAFGGALGLISCCDMAIGADD--AQFCLSEVRIGLAPAVISP-FVVKAIGERAARRYALTAERFDGRRARELGLLAESY  186 (265)
T ss_pred             CEEEechhhHhhhcCEEEEeCC--CEEeCcccccCCCcchhHH-HHHHHhCHHHHHHHHHhCcccCHHHHHHCCCcceec
Confidence            6899999999999999999988  9999999999999988765 588999999999999999999999999999999999


Q ss_pred             CCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccccccCCCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHhhCCCCCcH
Q psy9056          81 EPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAP  160 (359)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (359)
                      |+             +++.+.+.+++.+++..++...                                           
T Consensus       187 ~~-------------~~l~~~a~~~a~~la~~~p~a~-------------------------------------------  210 (265)
T PRK05674        187 PA-------------AELEAQVEAWIANLLLNSPQAL-------------------------------------------  210 (265)
T ss_pred             CH-------------HHHHHHHHHHHHHHHhcCHHHH-------------------------------------------
Confidence            98             8899999999999999887322                                           


Q ss_pred             HHHHHHHHHhhccChhhHHHH-HHHHhhhhhcChhhHHHHHhHhhhhhhhhc
Q psy9056         161 LKILDVVRTGIEKGPSAGYEA-EAEGFSQLAMTPQSKGLMGLFRAQTECKKN  211 (359)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~-e~~~~~~~~~s~~~~~~~~af~~k~~~~~~  211 (359)
                      ..+|+.++.....++++.++. +.+.+..++.|+|+++++++|++||+|++.
T Consensus       211 ~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~e~~~af~~kr~p~~~  262 (265)
T PRK05674        211 RASKDLLREVGDGELSPALRRYCENAIARIRVSAEGQEGLRAFLEKRTPAWQ  262 (265)
T ss_pred             HHHHHHHHHhhccChhHHHHHHHHHHHHHHhcCHHHHHHHHHHHccCCCCCC
Confidence            245667777777788888765 456778889999999999999999987763

>PRK08259 enoyl-CoA hydratase; Provisional

Probab=99.95  E-value=2.8e-27  Score=219.24  Aligned_cols=148  Identities=22%  Similarity=0.192  Sum_probs=135.4

Q ss_pred             CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceec
Q psy9056           1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLV   80 (359)
Q Consensus         1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~   80 (359)
                      |+|+|||++|+++|||||++++  ++|++||+++|++|++|++++|++++|..++++|+++|++++++||+++||||+++
T Consensus       102 G~a~GgG~~lalacD~~ia~~~--a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~a~~lll~g~~~~a~eA~~~Glv~~vv  179 (254)
T PRK08259        102 GYAVAGGLELALWCDLRVAEED--AVFGVFCRRWGVPLIDGGTVRLPRLIGHSRAMDLILTGRPVDADEALAIGLANRVV  179 (254)
T ss_pred             CEEEhHHHHHHHhCCEEEecCC--CEecCcccccCCCCCccHHHHHHHHhCHHHHHHHHHcCCccCHHHHHHcCCCCEee
Confidence            6899999999999999999998  99999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccccccCCCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHhhCCCCCcH
Q psy9056          81 EPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAP  160 (359)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (359)
                      |+             +++.+.+.+++++|++.|+..                                           .
T Consensus       180 ~~-------------~~l~~~a~~~a~~la~~~~~a-------------------------------------------~  203 (254)
T PRK08259        180 PK-------------GQARAAAEELAAELAAFPQTC-------------------------------------------L  203 (254)
T ss_pred             Ch-------------hHHHHHHHHHHHHHHhCCHHH-------------------------------------------H
Confidence            98             889999999999999988732                                           2


Q ss_pred             HHHHHHHHHhhccChhhHHHHHHHHhhhhhcChhhHHHHHhHhhhhh
Q psy9056         161 LKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQTE  207 (359)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~s~~~~~~~~af~~k~~  207 (359)
                      ..+|++++.....+++++++.|.+.+..++. +|++|++.+|++|+.
T Consensus       204 ~~~K~~~~~~~~~~~~~~~~~e~~~~~~~~~-~d~~egi~af~~~~~  249 (254)
T PRK08259        204 RADRLSALEQWGLPEEAALANEFAHGLAVLA-AEALEGAARFAAGAG  249 (254)
T ss_pred             HHHHHHHHHhhcCCHHHHHHHHHHHHHHHHh-hHHHHHHHHHHhhhc
Confidence            2456677776677899999999988777777 999999999999876

>PRK07509 enoyl-CoA hydratase; Provisional

Probab=99.95  E-value=2e-27  Score=221.25  Aligned_cols=151  Identities=20%  Similarity=0.168  Sum_probs=137.1

Q ss_pred             CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceec
Q psy9056           1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLV   80 (359)
Q Consensus         1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~   80 (359)
                      |.|+|||++|+++|||||++++  ++|++||+++|++|++|++++|++++|..++++|++||++++++||+++||||+++
T Consensus       111 G~a~GgG~~lalacD~~ia~~~--a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~~a~~l~ltg~~~~a~eA~~~Glv~~vv  188 (262)
T PRK07509        111 GVCFGGGLQIALGADIRIAAPD--TKLSIMEAKWGLVPDMAGTVSLRGLVRKDVARELTYTARVFSAEEALELGLVTHVS  188 (262)
T ss_pred             CeeecchHHHHHhCCEEEecCC--CEeecchhccCCCCCchHHHHHHHHhCHHHHHHHHHcCCCcCHHHHHHcCChhhhh
Confidence            6899999999999999999998  99999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccccccCCCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHhhCCCCCcH
Q psy9056          81 EPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAP  160 (359)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (359)
                      ++               +.+.+.+++++++..|+.                                           +.
T Consensus       189 ~~---------------~~~~a~~~a~~l~~~~~~-------------------------------------------~~  210 (262)
T PRK07509        189 DD---------------PLAAALALAREIAQRSPD-------------------------------------------AI  210 (262)
T ss_pred             ch---------------HHHHHHHHHHHHHhCCHH-------------------------------------------HH
Confidence            64               567899999999988763                                           22


Q ss_pred             HHHHHHHHHhhccChhhHHHHHHHHhhhhhcChhhHHHHHhHhhhhhhhhc
Q psy9056         161 LKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQTECKKN  211 (359)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~s~~~~~~~~af~~k~~~~~~  211 (359)
                      ..+|+.++.....++++++..|.+.+..++.++|+++++.+|++||+|++.
T Consensus       211 ~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~d~~e~~~af~ekr~p~~~  261 (262)
T PRK07509        211 AAAKRLINRSWTASVRALLARESVEQIRLLLGKNQKIAVKAQMKKRAPKFL  261 (262)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcChhHHHHHHHHhcCCCCCCC
Confidence            345667777777888999999999999999999999999999999988763

>PRK11423 methylmalonyl-CoA decarboxylase; Provisional

Probab=99.95  E-value=2.2e-27  Score=220.74  Aligned_cols=153  Identities=16%  Similarity=0.132  Sum_probs=135.7

Q ss_pred             CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceec
Q psy9056           1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLV   80 (359)
Q Consensus         1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~   80 (359)
                      |.|+|||++|+++||+||++++  ++|++||+++|++|++|++.++++++|..++++|+++|++++++||+++||||+++
T Consensus       105 G~a~GgG~~lalacD~~ia~~~--a~f~~pe~~~Gl~~~~g~~~~l~~~vg~~~a~~l~l~g~~~~a~eA~~~GLv~~vv  182 (261)
T PRK11423        105 GSVWGGAFELIMSCDLIIAAST--STFAMTPANLGVPYNLSGILNFTNDAGFHIVKEMFFTASPITAQRALAVGILNHVV  182 (261)
T ss_pred             cEEechHHHHHHhCCEEEecCC--CEecCchhhcCCCCCccHHHHHHHHhHHHHHHHHHHcCCCcCHHHHHHcCCcCccc
Confidence            6799999999999999999988  99999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccccccCCCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHhhCCCCCcH
Q psy9056          81 EPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAP  160 (359)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (359)
                      |+             +++++.+.++++++++.++..                                           .
T Consensus       183 ~~-------------~~l~~~a~~~a~~l~~~~~~a-------------------------------------------~  206 (261)
T PRK11423        183 EV-------------EELEDFTLQMAHHISEKAPLA-------------------------------------------I  206 (261)
T ss_pred             CH-------------HHHHHHHHHHHHHHHhcCHHH-------------------------------------------H
Confidence            98             889999999999999887632                                           2


Q ss_pred             HHHHHHHHHhhc-cCh-hhHHHHHHHHhhhhhcChhhHHHHHhHhhhhhhhhc
Q psy9056         161 LKILDVVRTGIE-KGP-SAGYEAEAEGFSQLAMTPQSKGLMGLFRAQTECKKN  211 (359)
Q Consensus       161 ~~~~~~~~~~~~-~~~-~~~~~~e~~~~~~~~~s~~~~~~~~af~~k~~~~~~  211 (359)
                      ..+|+.++.... .++ ++.++.|.+.+..++.|+|+++++.+|++||+|++.
T Consensus       207 ~~~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~eg~~af~~kr~p~~~  259 (261)
T PRK11423        207 AVIKEQLRVLGEAHPMNPDEFERIQGLRRAVYDSEDYQEGMNAFLEKRKPVFV  259 (261)
T ss_pred             HHHHHHHHhhcccCCcchHHHHHHHHHHHHHhCChhHHHHHHHHhccCCCCCC
Confidence            245555654332 233 577888888999999999999999999999998763

>PRK05864 enoyl-CoA hydratase; Provisional

Probab=99.95  E-value=2.6e-27  Score=222.07  Aligned_cols=153  Identities=18%  Similarity=0.156  Sum_probs=132.9

Q ss_pred             CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCC-CcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCccee
Q psy9056           1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLP-GAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQL   79 (359)
Q Consensus         1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p-~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~   79 (359)
                      |.|+|||++|+++||+||++++  ++|++||+++|++| ++|++++|++++|..++++|+++|++++++||+++||||++
T Consensus       118 G~a~GgG~~LalacD~ria~~~--a~f~~pe~~~Gl~p~~~g~~~~l~~~vG~~~A~~l~l~g~~~~a~eA~~~Glv~~v  195 (276)
T PRK05864        118 GPAIGGGLCLALAADIRVASSS--AYFRAAGINNGLTASELGLSYLLPRAIGSSRAFEIMLTGRDVDAEEAERIGLVSRQ  195 (276)
T ss_pred             CEeehhHHHHHHhCCEEEeeCC--CEecCcccccCCCCCCcchheehHhhhCHHHHHHHHHcCCccCHHHHHHcCCccee
Confidence            6899999999999999999998  99999999999997 78889999999999999999999999999999999999999


Q ss_pred             cCCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccccccCCCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHhhCCCCCc
Q psy9056          80 VEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPA  159 (359)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (359)
                      +|+             +++++.+.+++++|+..|+..                                           
T Consensus       196 v~~-------------~~l~~~a~~~a~~la~~~p~a-------------------------------------------  219 (276)
T PRK05864        196 VPD-------------EQLLDTCYAIAARMAGFSRPG-------------------------------------------  219 (276)
T ss_pred             eCH-------------HHHHHHHHHHHHHHHhCCHHH-------------------------------------------
Confidence            998             889999999999999887732                                           


Q ss_pred             HHHHHHHHHHhhcc-ChhhHHHHHHHHh-hhhhcChhhHHHHHhHhhhhhhhhc
Q psy9056         160 PLKILDVVRTGIEK-GPSAGYEAEAEGF-SQLAMTPQSKGLMGLFRAQTECKKN  211 (359)
Q Consensus       160 ~~~~~~~~~~~~~~-~~~~~~~~e~~~~-~~~~~s~~~~~~~~af~~k~~~~~~  211 (359)
                      ...+|+.++..... ++++.+..|.... ..++.++|+++++.+|++||+|++.
T Consensus       220 ~~~~K~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~~d~~e~~~af~~kr~p~~~  273 (276)
T PRK05864        220 IELTKRTLWSGLDAASLEAHMQAEGLGQLFVRLLTANFEEAVAARAEKRPPVFT  273 (276)
T ss_pred             HHHHHHHHHhhcccCCHHHHHHHHHHHHHHHhccChhHHHHHHHHhccCCCCCC
Confidence            22455666655444 6778887776532 2357899999999999999998764

>PLN02921 naphthoate synthase

Probab=99.95  E-value=4.5e-27  Score=224.41  Aligned_cols=154  Identities=12%  Similarity=0.126  Sum_probs=133.2

Q ss_pred             CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceec
Q psy9056           1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLV   80 (359)
Q Consensus         1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~   80 (359)
                      |.|+|||++|+++||+|||+++  ++|++||+++|++|+++++++|++++|..++++|+++|++|+|+||+++||||+++
T Consensus       170 G~a~GGG~~LalacD~riA~~~--A~f~~pe~~~Gl~p~~gg~~~L~rliG~~~A~ellltG~~~~A~eA~~~GLV~~vv  247 (327)
T PLN02921        170 GYAVGGGHILHMVCDLTIAADN--AVFGQTGPKVGSFDAGYGSSIMARLVGQKKAREMWFLARFYTASEALKMGLVNTVV  247 (327)
T ss_pred             CEEecHHHHHHHhCCEEEEeCC--CEEeCcccccCCCCCccHHHHHHHHhCHHHHHHHHHcCCcCCHHHHHHCCCceEEe
Confidence            6899999999999999999998  99999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccccccCCCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHhhCCCCCcH
Q psy9056          81 EPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAP  160 (359)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (359)
                      |.             +++.+++.+++++|+..++...                                           
T Consensus       248 ~~-------------~~l~~~a~~~a~~la~~~p~al-------------------------------------------  271 (327)
T PLN02921        248 PL-------------DELEGETVKWCREILRNSPTAI-------------------------------------------  271 (327)
T ss_pred             CH-------------HHHHHHHHHHHHHHHccCHHHH-------------------------------------------
Confidence            98             8999999999999999887322                                           


Q ss_pred             HHHHHHHHHhhccChhhHHHHHHHHhhhhhcChhhHHHHHhHhhhhhhhhcCC
Q psy9056         161 LKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQTECKKNRL  213 (359)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~s~~~~~~~~af~~k~~~~~~~~  213 (359)
                      ..+|++++..... .......|.+.+..++.++|++||+.+|++||+|+|...
T Consensus       272 ~~~K~~l~~~~~~-~~~~~~~~~~~~~~~~~s~d~~egi~Af~ekr~p~f~~~  323 (327)
T PLN02921        272 RVLKSALNAADDG-HAGLQELGGNATLLFYGSEEGNEGRTAYLEGRAPDFSKF  323 (327)
T ss_pred             HHHHHHHHHhhcc-hhHHHHHHHHHHHHHhcCHHHHHHHHHHhccCCCCCCCC
Confidence            2345555544332 233334445788889999999999999999999988643

>PRK06495 enoyl-CoA hydratase; Provisional

Probab=99.94  E-value=5.7e-27  Score=217.59  Aligned_cols=150  Identities=23%  Similarity=0.232  Sum_probs=136.2

Q ss_pred             CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceec
Q psy9056           1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLV   80 (359)
Q Consensus         1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~   80 (359)
                      |.|+|||++|+++||+||++++  ++|++||+++|++   |++.++++++|..++++|+++|++++++||+++||||+++
T Consensus       106 G~a~GgG~~lalacD~~ia~~~--a~f~~pe~~~Gl~---~~~~~l~~~~g~~~a~~lll~g~~~~a~eA~~~GLv~~vv  180 (257)
T PRK06495        106 GPALGAGLGLVASCDIIVASEN--AVFGLPEIDVGLA---GGGKHAMRLFGHSLTRRMMLTGYRVPAAELYRRGVIEACL  180 (257)
T ss_pred             CeeehhHHHHHHhCCEEEecCC--CEeeChhhccCcc---ccHHHHHHHhCHHHHHHHHHcCCeeCHHHHHHcCCcceec
Confidence            6899999999999999999988  9999999999996   4567899999999999999999999999999999999999


Q ss_pred             CCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccccccCCCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHhhCCCCCcH
Q psy9056          81 EPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAP  160 (359)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (359)
                      |+             +++.+.+.++++++++.|+..                                           .
T Consensus       181 ~~-------------~~~~~~a~~~a~~l~~~~~~a-------------------------------------------~  204 (257)
T PRK06495        181 PP-------------EELMPEAMEIAREIASKSPLA-------------------------------------------T  204 (257)
T ss_pred             CH-------------HHHHHHHHHHHHHHHhCCHHH-------------------------------------------H
Confidence            98             889999999999999988732                                           2


Q ss_pred             HHHHHHHHHhhccChhhHHHHHHHHhhhhhcChhhHHHHHhHhhhhhhhhc
Q psy9056         161 LKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQTECKKN  211 (359)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~s~~~~~~~~af~~k~~~~~~  211 (359)
                      ..+|+.++.....+++++++.|.+.+..++.|+|+++|+++|++||+|++.
T Consensus       205 ~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~d~~egi~af~~kr~p~~~  255 (257)
T PRK06495        205 RLAKDALNTIENMSLRDGYRYEQDITAKLAKTEDAKEAQRAFLEKRPPVFK  255 (257)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcChHHHHHHHHHhccCCCCCC
Confidence            345666777767889999999999999999999999999999999998863

>PRK07938 enoyl-CoA hydratase; Provisional

Probab=99.94  E-value=5.1e-27  Score=216.83  Aligned_cols=147  Identities=19%  Similarity=0.213  Sum_probs=133.3

Q ss_pred             CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceec
Q psy9056           1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLV   80 (359)
Q Consensus         1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~   80 (359)
                      |.|+|||++|+++||+||++++  ++|++||+++|++   |++.+|++++|..++++|+++|++++++||+++||||+++
T Consensus       103 G~a~GgG~~Lal~cD~ria~~~--a~f~~pe~~~G~~---g~~~~l~~~vg~~~a~~l~ltg~~~~a~eA~~~Glv~~vv  177 (249)
T PRK07938        103 GFCLGGGIGLVGNADVIVASDD--ATFGLPEVDRGAL---GAATHLQRLVPQHLMRALFFTAATITAAELHHFGSVEEVV  177 (249)
T ss_pred             CEEeehHHHHHHhCCEEEEeCC--CEeeCccceecCc---hhHHHHHHhcCHHHHHHHHHhCCcCCHHHHHHCCCccEEe
Confidence            6899999999999999999988  9999999999986   4567899999999999999999999999999999999999


Q ss_pred             CCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccccccCCCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHhhCCCCCcH
Q psy9056          81 EPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAP  160 (359)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (359)
                      |+             +++++.+.++++++++.++.                                           +.
T Consensus       178 ~~-------------~~l~~~a~~~a~~la~~~~~-------------------------------------------a~  201 (249)
T PRK07938        178 PR-------------DQLDEAALEVARKIAAKDTR-------------------------------------------VI  201 (249)
T ss_pred             CH-------------HHHHHHHHHHHHHHHhCCHH-------------------------------------------HH
Confidence            98             89999999999999998773                                           22


Q ss_pred             HHHHHHHHHhhccChhhHHHHHHHHhhhhhcChhhHHHHHhHhhhhhh
Q psy9056         161 LKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQTEC  208 (359)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~s~~~~~~~~af~~k~~~  208 (359)
                      ..+|+.++.....++++.++.|.+.+..++.++|++|++++|++||+|
T Consensus       202 ~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~d~~eg~~af~ekr~p  249 (249)
T PRK07938        202 RAAKEALNGIDPQDVERSYRWEQGFTFELNLAGVSDEHRDAFVEKRKA  249 (249)
T ss_pred             HHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCccHHHHHHHHHhcCCC
Confidence            356677777667788999999999999999999999999999999875

>PRK08260 enoyl-CoA hydratase; Provisional

Probab=99.94  E-value=5.9e-27  Score=221.72  Aligned_cols=155  Identities=18%  Similarity=0.167  Sum_probs=132.8

Q ss_pred             CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceec
Q psy9056           1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLV   80 (359)
Q Consensus         1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~   80 (359)
                      |.|+|||++|+++|||||++++  ++|++||+++|++|++|++++|++++|..++++|+++|++++++||+++||||+++
T Consensus       122 G~a~GgG~~LalacD~ria~~~--a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~A~~llltg~~~~a~eA~~~GLv~~vv  199 (296)
T PRK08260        122 GPAVGVGATMTLAMDIRLASTA--ARFGFVFGRRGIVPEAASSWFLPRLVGLQTALEWVYSGRVFDAQEALDGGLVRSVH  199 (296)
T ss_pred             CeeehHhHHHHHhCCEEEeeCC--CEEecchhhcCcCCCcchhhhHHHhhCHHHHHHHHHcCCccCHHHHHHCCCceeec
Confidence            6899999999999999999998  99999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCcchhhHHHHHHHHHHHHHHHhcC-ccccccCCCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHhhCCCCCc
Q psy9056          81 EPLGPGLNHPEERTMEYLEEVAVNTASQLASG-KLKINRTKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPA  159 (359)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~-~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (359)
                      |+             +++.+.+.+++++++.. ++..                                           
T Consensus       200 ~~-------------~~l~~~a~~~a~~i~~~~~~~a-------------------------------------------  223 (296)
T PRK08260        200 PP-------------DELLPAARALAREIADNTSPVS-------------------------------------------  223 (296)
T ss_pred             CH-------------HHHHHHHHHHHHHHHhcCChHH-------------------------------------------
Confidence            98             88999999999999985 5521                                           


Q ss_pred             HHHHHHHHHHhhc-cChhhHHHHHHHHhhhhhcChhhHHHHHhHhhhhhhhhcCC
Q psy9056         160 PLKILDVVRTGIE-KGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQTECKKNRL  213 (359)
Q Consensus       160 ~~~~~~~~~~~~~-~~~~~~~~~e~~~~~~~~~s~~~~~~~~af~~k~~~~~~~~  213 (359)
                      ...+|+.++.... ....+....|.+.+..++.++|+++++.+|++||+|.|...
T Consensus       224 ~~~~K~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~d~~egi~af~~kr~p~f~~~  278 (296)
T PRK08260        224 VALTRQMMWRMAGADHPMEAHRVDSRAIYSRGRSGDGKEGVSSFLEKRPAVFPGK  278 (296)
T ss_pred             HHHHHHHHHhcccCCCcHHHHHHHHHHHHHHccChhHHHHHHHHhcCCCCCCCCC
Confidence            2234555555432 11223335677888899999999999999999999888543

>PF00378 ECH: Enoyl-CoA hydratase/isomerase family; InterPro: IPR001753 The crotonase superfamily is comprised of mechanistically diverse proteins that share a conserved trimeric quaternary structure (sometimes a hexamer consisting of a dimer of trimers), the core of which consists of 4 turns of a (beta/beta/alpha)n superhelix

Probab=99.94  E-value=4.3e-27  Score=216.93  Aligned_cols=147  Identities=31%  Similarity=0.470  Sum_probs=137.0

Q ss_pred             CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceec
Q psy9056           1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLV   80 (359)
Q Consensus         1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~   80 (359)
                      |+|+|||++|+++|||||++++  ++|++||+++|++|++|++++|++++|..++++++++|++++++||+++||||+++
T Consensus        99 G~a~GgG~~lala~D~~ia~~~--a~f~~pe~~~G~~p~~g~~~~l~r~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v~  176 (245)
T PF00378_consen   99 GHAVGGGFELALACDFRIAAED--AKFGFPEVRLGIFPGAGGTFRLPRLIGPSRARELLLTGEPISAEEALELGLVDEVV  176 (245)
T ss_dssp             SEEETHHHHHHHHSSEEEEETT--TEEETGGGGGTSSSTSTHHHHHHHHHHHHHHHHHHHHTCEEEHHHHHHTTSSSEEE
T ss_pred             ccccccccccccccceEEeecc--cceeeeecccCcccccccccccceeeecccccccccccccchhHHHHhhcceeEEc
Confidence            6799999999999999999998  99999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccccccCCCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHhhCCCCCcH
Q psy9056          81 EPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAP  160 (359)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (359)
                      |+             +++.+.+.+++++++..|+..                                           .
T Consensus       177 ~~-------------~~l~~~a~~~a~~l~~~~~~a-------------------------------------------~  200 (245)
T PF00378_consen  177 PD-------------EELDEEALELAKRLAAKPPSA-------------------------------------------L  200 (245)
T ss_dssp             SG-------------GGHHHHHHHHHHHHHTSCHHH-------------------------------------------H
T ss_pred             Cc-------------hhhhHHHHHHHHHHhcCCHHH-------------------------------------------H
Confidence            98             779999999999999987632                                           2


Q ss_pred             HHHHHHHHHhhccChhhHHHHHHHHhhhhhcChhhHHHHHhHhhh
Q psy9056         161 LKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQ  205 (359)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~s~~~~~~~~af~~k  205 (359)
                      ..+++.++......+++.++.|.+.+..++.++|++|++++|++|
T Consensus       201 ~~~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~f~eK  245 (245)
T PF00378_consen  201 RATKKALNRALEQSLEEALEFEQDLFAECFKSEDFQEGIAAFLEK  245 (245)
T ss_dssp             HHHHHHHHHHHHSHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHhCc
Confidence            256677777777889999999999999999999999999999987

Some enzymes in the superfamily have been shown to display dehalogenase, hydratase, and isomerase activities, while others have been implicated in carbon-carbon bond formation and cleavage as well as the hydrolysis of thioesters []. However, these different enzymes share the need to stabilise an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two structurally conserved peptidic NH groups that provide hydrogen bonds to the carbonyl moieties of the acyl-CoA substrates and form an "oxyanion hole". The CoA thioester derivatives bind in a characteristic hooked shape and a conserved tunnel binds the pantetheine group of CoA, which links the 3'-phosphate ADP binding site to the site of reaction []. Enzymes in the crotonase superfamily include: Enoyl-CoA hydratase (crotonase; 4.2.1.17 from EC), which catalyses the hydratation of 2-trans-enoyl-CoA into 3-hydroxyacyl-CoA []. 3-2trans-enoyl-CoA isomerase (or dodecenoyl-CoA isomerise; 5.3.3.8 from EC), which shifts the 3-double bond of the intermediates of unsaturated fatty acid oxidation to the 2-trans position []. 3-hydroxbutyryl-CoA dehydratase (crotonase; 4.2.1.55 from EC), a bacterial enzyme involved in the butyrate/butanol-producing pathway. 4-Chlorobenzoyl-CoA dehalogenase (3.8.1.6 from EC), a Pseudomonas enzyme which catalyses the conversion of 4-chlorobenzoate-CoA to 4-hydroxybenzoate-CoA []. Dienoyl-CoA isomerise, which catalyses the isomerisation of 3-trans,5-cis-dienoyl-CoA to 2-trans,4-trans-dienoyl-CoA []. Naphthoate synthase (MenB, or DHNA synthetase; 4.1.3.36 from EC), a bacterial enzyme involved in the biosynthesis of menaquinone (vitamin K2) []. Carnitine racemase (gene caiD), which catalyses the reversible conversion of crotonobetaine to L-carnitine in Escherichia coli []. Methylmalonyl CoA decarboxylase (MMCD; 4.1.1.41 from EC), which has a hexameric structure (dimer of trimers) []. Carboxymethylproline synthase (CarB), which is involved in carbapenem biosynthesis []. 6-oxo camphor hydrolase, which catalyses the desymmetrisation of bicyclic beta-diketones to optically active keto acids []. The alpha subunit of fatty oxidation complex, a multi-enzyme complex that catalyses the last three reactions in the fatty acid beta-oxidation cycle []. AUH protein, a bifunctional RNA-binding homologue of enoyl-CoA hydratase []. This entry represents the core domain found in crotonase superfamily members.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2VRE_B 3RSI_A 1HZD_F 2ZQR_E 2ZQQ_D 3R9S_C 1O8U_E 1SZO_C 3MOY_A 2UZF_A ....

>PRK07327 enoyl-CoA hydratase; Provisional

Probab=99.94  E-value=9.2e-27  Score=217.45  Aligned_cols=149  Identities=17%  Similarity=0.125  Sum_probs=126.7

Q ss_pred             CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceec
Q psy9056           1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLV   80 (359)
Q Consensus         1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~   80 (359)
                      |.|+|||++|+++|||||++++  ++|++||+++|++|++|++++|++++|..++++|++||++++++||+++||||+++
T Consensus       115 G~a~GgG~~lalacD~ria~~~--a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~ltg~~~~a~eA~~~Glv~~vv  192 (268)
T PRK07327        115 GPAVGAGLVAALLADISIAAKD--ARIIDGHTRLGVAAGDHAAIVWPLLCGMAKAKYYLLLCEPVSGEEAERIGLVSLAV  192 (268)
T ss_pred             CeeeehhhHHHHhCCEEEecCC--CEEeCcccccCCCCCcchhhHHHHHhCHHHHHHHHHcCCccCHHHHHHcCCcceec
Confidence            6899999999999999999998  99999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccccccCCCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHhhCCCCCcH
Q psy9056          81 EPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAP  160 (359)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (359)
                      |+             +++++.+.++++++++.|+...+                                          
T Consensus       193 ~~-------------~~l~~~a~~~a~~la~~~~~a~~------------------------------------------  217 (268)
T PRK07327        193 DD-------------DELLPKALEVAERLAAGSQTAIR------------------------------------------  217 (268)
T ss_pred             CH-------------HHHHHHHHHHHHHHHcCCHHHHH------------------------------------------
Confidence            98             88999999999999998873322                                          


Q ss_pred             HHHHHHHHHhh---ccChhhHHHHHHHHhhhhhcChhhHHHHHhHhhhhhhhhc
Q psy9056         161 LKILDVVRTGI---EKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQTECKKN  211 (359)
Q Consensus       161 ~~~~~~~~~~~---~~~~~~~~~~e~~~~~~~~~s~~~~~~~~af~~k~~~~~~  211 (359)
                       .+|+.++...   ..++++.+..|    ..++.++|+++++.+|++||+|+|.
T Consensus       218 -~~K~~l~~~~~~~~~~~~~~~~~~----~~~~~~~d~~eg~~af~ekr~p~~~  266 (268)
T PRK07327        218 -WTKYALNNWLRMAGPTFDTSLALE----FMGFSGPDVREGLASLREKRAPDFP  266 (268)
T ss_pred             -HHHHHHHHhhhhhhhhHHHHHHHH----HHHccChhHHHHHHHHHhcCCCCCC
Confidence             2334444321   12344444443    2467999999999999999998763

>PRK08321 naphthoate synthase; Validated

Probab=99.94  E-value=1.3e-26  Score=219.72  Aligned_cols=153  Identities=16%  Similarity=0.169  Sum_probs=133.2

Q ss_pred             CCCCchHHHHHHhcCEEEEe-cCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCccee
Q psy9056           1 MFAEPSLATVALACHYRIVV-KDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQL   79 (359)
Q Consensus         1 ~~a~GgG~~lalacD~ria~-~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~   79 (359)
                      |.|+|||++|+++||||||+ ++  ++|++||+++|++|+++++.+|++++|..++++|++||++++|+||+++|||+++
T Consensus       144 G~a~GgG~~lalacD~ria~~~~--a~f~~pe~~~Gl~p~~~~~~~L~r~vG~~~A~~l~ltG~~~~A~eA~~~GLv~~v  221 (302)
T PRK08321        144 GWAAGGGHSLHVVCDLTLASREH--ARFKQTDADVGSFDGGYGSAYLARQVGQKFAREIFFLGRTYSAEEAHDMGAVNAV  221 (302)
T ss_pred             CeeehHHHHHHHhCCEEEEecCC--CEEECCccccccCCCchHHHHHHHHhCHHHHHHHHHcCCccCHHHHHHCCCceEe
Confidence            67999999999999999999 57  9999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccccccCCCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHhhCCCCCc
Q psy9056          80 VEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPA  159 (359)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (359)
                      +|+             +++++.+.+++++|++.++...+                                         
T Consensus       222 v~~-------------~~l~~~a~~~a~~la~~~~~a~~-----------------------------------------  247 (302)
T PRK08321        222 VPH-------------AELETEALEWAREINGKSPTAMR-----------------------------------------  247 (302)
T ss_pred             eCH-------------HHHHHHHHHHHHHHHhCCHHHHH-----------------------------------------
Confidence            998             88999999999999998873222                                         


Q ss_pred             HHHHHHHHHHhhccChhhHHHHHHHHhhhhhcChhhHHHHHhHhhhhhhhhcC
Q psy9056         160 PLKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQTECKKNR  212 (359)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~s~~~~~~~~af~~k~~~~~~~  212 (359)
                        .+|++++.... ...+....|.+.+..++.++|+++++.+|++||+|++..
T Consensus       248 --~~K~~l~~~~~-~~~~~~~~e~~~~~~~~~~~d~~egi~af~ekr~p~~~~  297 (302)
T PRK08321        248 --MLKYAFNLTDD-GLVGQQLFAGEATRLAYMTDEAQEGRDAFLEKRDPDWSD  297 (302)
T ss_pred             --HHHHHHHhhhc-ccHHHHHHHHHHHHHHhcCHHHHHHHHHHhccCCCCCCC
Confidence              34455544333 334445568888899999999999999999999988753

>PRK06023 enoyl-CoA hydratase; Provisional

Probab=99.94  E-value=1.4e-26  Score=214.34  Aligned_cols=146  Identities=21%  Similarity=0.279  Sum_probs=131.6

Q ss_pred             CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceec
Q psy9056           1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLV   80 (359)
Q Consensus         1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~   80 (359)
                      |.|+|||++|+++|||||++++  ++|++||+++|++|++|+++++++++|..++++|+++|++++++||+++|||++++
T Consensus       106 G~a~GgG~~la~acD~ria~~~--a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~vv  183 (251)
T PRK06023        106 GLAIGIGTTIHLHCDLTFASPR--SLFRTPFVDLALVPEAGSSLLAPRLMGHQRAFALLALGEGFSAEAAQEAGLIWKIV  183 (251)
T ss_pred             CceecHHHHHHHhCCEEEEeCC--CEecCcccccCCCCCchHHHHHHHHHhHHHHHHHHHhCCCCCHHHHHHcCCcceee
Confidence            6899999999999999999988  99999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccccccCCCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHhhCCCCCcH
Q psy9056          81 EPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAP  160 (359)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (359)
                      |.             +++.+.+.+++++|+..|+...                                           
T Consensus       184 ~~-------------~~l~~~a~~~a~~l~~~~~~a~-------------------------------------------  207 (251)
T PRK06023        184 DE-------------EAVEAETLKAAEELAAKPPQAL-------------------------------------------  207 (251)
T ss_pred             CH-------------HHHHHHHHHHHHHHHhCCHHHH-------------------------------------------
Confidence            98             8899999999999999887322                                           


Q ss_pred             HHHHHHHHHhhccChhhHHHHHHHHhhhhhcChhhHHHHHhHhhh
Q psy9056         161 LKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQ  205 (359)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~s~~~~~~~~af~~k  205 (359)
                      ..+|+.++.. ...+.+.++.|.+.+..++.++|+++++++|++|
T Consensus       208 ~~~K~~l~~~-~~~l~~~~~~e~~~~~~~~~~~~~~e~~~af~e~  251 (251)
T PRK06023        208 QIARDLMRGP-REDILARIDEEAKHFAARLKSAEARAAFEAFMRR  251 (251)
T ss_pred             HHHHHHHHhc-hhhHHHHHHHHHHHHHHHhCCHHHHHHHHHHhcC
Confidence            2345555544 2457888888999999999999999999999875

>PRK07854 enoyl-CoA hydratase; Provisional

Probab=99.94  E-value=1e-26  Score=214.10  Aligned_cols=147  Identities=17%  Similarity=0.108  Sum_probs=130.6

Q ss_pred             CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceec
Q psy9056           1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLV   80 (359)
Q Consensus         1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~   80 (359)
                      |.|+|||++|+++||+|||+++  ++|++||+++|++|++|++++|++++|..++++|++||++++++||+++||||+++
T Consensus        95 G~a~GgG~~lal~cD~~ia~~~--a~f~~pe~~~G~~p~~g~~~~l~~~~G~~~a~~l~ltg~~~~a~eA~~~Glv~~v~  172 (243)
T PRK07854         95 GPAIGAGLQLAMACDLRVVAPE--AYFQFPVAKYGIALDNWTIRRLSSLVGGGRARAMLLGAEKLTAEQALATGMANRIG  172 (243)
T ss_pred             CcccccHHHHHHhCCEEEEcCC--CEEeccccccccCCCccHHHHHHHHhCHHHHHHHHHcCCCcCHHHHHHCCCccccc
Confidence            6899999999999999999988  99999999999999999999999999999999999999999999999999999997


Q ss_pred             CCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccccccCCCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHhhCCCCCcH
Q psy9056          81 EPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAP  160 (359)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (359)
                      +.             +    .+.++++++++.|+..                                           .
T Consensus       173 ~~-------------~----~a~~~a~~l~~~~~~a-------------------------------------------~  192 (243)
T PRK07854        173 TL-------------A----DAQAWAAEIAGLAPLA-------------------------------------------L  192 (243)
T ss_pred             CH-------------H----HHHHHHHHHHhCCHHH-------------------------------------------H
Confidence            53             3    6788999999887632                                           2


Q ss_pred             HHHHHHHHHhhccChhhHHHHHHHHhhhhhcChhhHHHHHhHhhhhhhhhc
Q psy9056         161 LKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQTECKKN  211 (359)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~s~~~~~~~~af~~k~~~~~~  211 (359)
                      ..+|+.++..  .+++++++.|.+.+..++.++|+++++.+|++||+|.+.
T Consensus       193 ~~~K~~l~~~--~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~~kr~p~~~  241 (243)
T PRK07854        193 QHAKRVLNDD--GAIEEAWPAHKELFDKAWASQDAIEAQVARIEKRPPKFQ  241 (243)
T ss_pred             HHHHHHHHcc--CCHHHHHHHHHHHHHHHhcCchHHHHHHHHhCCCCCCCC
Confidence            2455556554  568889999999999999999999999999999987763

>PRK06144 enoyl-CoA hydratase; Provisional

Probab=99.94  E-value=1.4e-26  Score=215.49  Aligned_cols=149  Identities=23%  Similarity=0.228  Sum_probs=130.3

Q ss_pred             CCCCchHHHHHHhcCEEEEecCCceEEeccccC-CCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCccee
Q psy9056           1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVM-LGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQL   79 (359)
Q Consensus         1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~-~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~   79 (359)
                      |.|+|||++|+++||||||+++  ++|++||++ +|++|++|++++|++++|..++++++++|++++++||+++||||++
T Consensus       111 G~a~GgG~~lala~D~~ia~~~--a~f~~pe~~~~G~~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~v  188 (262)
T PRK06144        111 GACVGGGAAIAAACDLRIATPS--ARFGFPIARTLGNCLSMSNLARLVALLGAARVKDMLFTARLLEAEEALAAGLVNEV  188 (262)
T ss_pred             CeeeehHHHHHHhCCEEEecCC--CEeechhHHhccCCCCccHHHHHHHHhCHHHHHHHHHcCCCcCHHHHHHcCCcCee
Confidence            6899999999999999999998  999999997 9999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccccccCCCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHhhCCCCCc
Q psy9056          80 VEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPA  159 (359)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (359)
                      +|+             +++++.+.++++++++.|+....                                         
T Consensus       189 v~~-------------~~l~~~a~~~a~~i~~~~~~a~~-----------------------------------------  214 (262)
T PRK06144        189 VED-------------AALDARADALAELLAAHAPLTLR-----------------------------------------  214 (262)
T ss_pred             cCH-------------HHHHHHHHHHHHHHHhCCHHHHH-----------------------------------------
Confidence            998             89999999999999998873222                                         


Q ss_pred             HHHHHHHHHHhhccChhhHHHHHHHHhhhhhcChhhHHHHHhHhhhhhhhhc
Q psy9056         160 PLKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQTECKKN  211 (359)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~s~~~~~~~~af~~k~~~~~~  211 (359)
                        .+|+.++.....    .++.+.+.+..++.++|+++++.+|++||+|++.
T Consensus       215 --~~K~~l~~~~~~----~l~~~~~~~~~~~~~~~~~e~~~af~~kr~p~~~  260 (262)
T PRK06144        215 --ATKEALRRLRRE----GLPDGDDLIRMCYMSEDFREGVEAFLEKRPPKWK  260 (262)
T ss_pred             --HHHHHHHHhhhc----CHHHHHHHHHHHhcChHHHHHHHHHhcCCCCCCC
Confidence              344455543333    3445567788899999999999999999988763

>TIGR03189 dienoyl_CoA_hyt cyclohexa-1,5-dienecarbonyl-CoA hydratase

Probab=99.94  E-value=2.4e-26  Score=212.51  Aligned_cols=150  Identities=17%  Similarity=0.184  Sum_probs=127.7

Q ss_pred             CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceec
Q psy9056           1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLV   80 (359)
Q Consensus         1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~   80 (359)
                      |.|+|||++|+++|||||++++  ++|++||+++|++|+ +++++|++++|..++++|++||++++++||+++|||++++
T Consensus        98 G~a~GgG~~lal~cD~~ia~~~--a~f~~pe~~~Gl~p~-~~~~~l~~~vg~~~a~~l~ltg~~~~a~eA~~~Glv~~v~  174 (251)
T TIGR03189        98 GQCLGGGLEVAAAGNLMFAAPD--AKLGQPEIVLGVFAP-AASCLLPERMGRVAAEDLLYSGRSIDGAEGARIGLANAVA  174 (251)
T ss_pred             CeeeeHHHHHHHhCCEEEEcCC--CEEeCchhhcCCCCC-chHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHCCCcceec
Confidence            6899999999999999999998  999999999999987 4678999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCcchhhHHHHHHHHHHH-HHHHhcCccccccCCCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHhhCCCCCc
Q psy9056          81 EPLGPGLNHPEERTMEYLEEVAVNT-ASQLASGKLKINRTKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPA  159 (359)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~~~~-~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (359)
                      |+             ++  ..+.++ +++++..|+..                                           
T Consensus       175 ~~-------------~~--~~a~~~~a~~la~~~p~a-------------------------------------------  196 (251)
T TIGR03189       175 ED-------------PE--NAALAWFDEHPAKLSASS-------------------------------------------  196 (251)
T ss_pred             Cc-------------HH--HHHHHHHHHHHHhCCHHH-------------------------------------------
Confidence            86             33  345555 68898887632                                           


Q ss_pred             HHHHHHHHHHhhccChhhHHH-HHHHHhhhhhcChhhHHHHHhHhhhhhhhhc
Q psy9056         160 PLKILDVVRTGIEKGPSAGYE-AEAEGFSQLAMTPQSKGLMGLFRAQTECKKN  211 (359)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~-~e~~~~~~~~~s~~~~~~~~af~~k~~~~~~  211 (359)
                      ...+|+.++.....++++.+. .|.+.+..++.|+|++|++++|++||+|+|.
T Consensus       197 ~~~~K~~l~~~~~~~~~~~~~~~e~~~~~~~~~s~d~~eg~~af~ekr~p~~~  249 (251)
T TIGR03189       197 LRFAVRAARLGMNERVKAKIAEVEALYLEELMATHDAVEGLNAFLEKRPALWE  249 (251)
T ss_pred             HHHHHHHHHhhhcccHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHhcCCCCCC
Confidence            224556666666677777664 7778888999999999999999999998763

This enzyme, cyclohexa-1,5-dienecarbonyl-CoA hydratase, also called dienoyl-CoA hydratase, acts on the product of benzoyl-CoA reductase (EC 1.3.99.15). Benzoyl-CoA is a common intermediate in the degradation of many aromatic compounds, and this enzyme is part of an anaerobic pathway for dearomatization and degradation.

>PLN02157 3-hydroxyisobutyryl-CoA hydrolase-like protein

Probab=99.94  E-value=1.8e-26  Score=224.79  Aligned_cols=189  Identities=13%  Similarity=0.069  Sum_probs=150.1

Q ss_pred             CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceec
Q psy9056           1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLV   80 (359)
Q Consensus         1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~   80 (359)
                      |+|+|||++|+++|||||++++  ++|++||+++|++|++|++++|++++|. .+++|++||++++++||+++||++++|
T Consensus       142 G~a~GGG~~Lal~cD~rvate~--a~fa~PE~~iGl~Pd~G~s~~L~rl~G~-~a~~L~LTG~~i~A~eA~~~GLv~~vV  218 (401)
T PLN02157        142 GVTMGGGTGVSIPGTFRVATDR--TIFATPETIIGFHPDAGASFNLSHLPGR-LGEYLGLTGLKLSGAEMLACGLATHYI  218 (401)
T ss_pred             CeEeehhHHHHHhCCEEEEeCC--CEEEChhhhcCCCCCccHHHHHHHhhhH-HHHHHHHcCCcCCHHHHHHcCCceEEe
Confidence            7899999999999999999998  9999999999999999999999999995 799999999999999999999999999


Q ss_pred             CCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccc-cccCCCCCC-------ch-------------hhhhhhhhhhhhh
Q psy9056          81 EPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLK-INRTKPMIP-------DK-------------VLDVALKFEFVRN  139 (359)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~-~~~~k~~~~-------~~-------------~~~~~~~~~~~~~  139 (359)
                      |+             +++ +.+.+++.+++..++. +...|..+.       ..             -.+..+++..+.+
T Consensus       219 p~-------------~~l-~~~~~~~~~i~~~~p~av~~~k~~~~~~~~~~~~~l~~~~~~i~~~f~~~d~~ei~~al~~  284 (401)
T PLN02157        219 RS-------------EEI-PVMEEQLKKLLTDDPSVVESCLEKCAEVAHPEKTGVIRRIDLLEKCFSHDTVEEIIDSLEI  284 (401)
T ss_pred             CH-------------hHH-HHHHHHHHHHHcCCHHHHHHHHHHHhcccCCcchhHHHHHHHHHHHhcCCCHHHHHHHHHh
Confidence            98             666 4666777777665431 111221110       00             0111222233322


Q ss_pred             H----HHHHHHHHHHHhhCCCCCcHHHHHHHHHHhhccChhhHHHHHHHHhhhhhc---ChhhHHHHHh-Hhhhh
Q psy9056         140 Q----IFGKAKEKVMKMSGGLYPAPLKILDVVRTGIEKGPSAGYEAEAEGFSQLAM---TPQSKGLMGL-FRAQT  206 (359)
Q Consensus       140 ~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~---s~~~~~~~~a-f~~k~  206 (359)
                      .    ...|....+.....+++.+...++++++++...+++++++.|++...+++.   ++||.|||++ .++|.
T Consensus       285 ~~~kr~~~wa~~~~~~l~~~sP~Sl~vt~~~~~~~~~~~l~e~~~~e~~~~~~~~~~~~~~DF~EGVRA~LiDKd  359 (401)
T PLN02157        285 EAGRRKDTWCITTLRRLKESSPLSLKVALRSIREGRLQTLDQCLIREYRMSLQGLIGPMSGNFCEGVRARLIDKD  359 (401)
T ss_pred             hhcccchHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHcCCC
Confidence            1    245777777777778889999999999999999999999999999999885   7999999997 45565

>COG1024 CaiD Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism]

Probab=99.94  E-value=3.6e-26  Score=212.27  Aligned_cols=150  Identities=36%  Similarity=0.482  Sum_probs=133.2

Q ss_pred             CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceec
Q psy9056           1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLV   80 (359)
Q Consensus         1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~   80 (359)
                      |+|+|||++|+++||+|||+++  ++|++||+++|++|++|++++|++++|..++++|++||+.++++||+++|||++++
T Consensus       107 G~a~GgG~eLal~~D~ria~~~--a~f~~pe~~iGl~Pg~g~~~~l~r~~G~~~a~~l~ltg~~~~a~eA~~~Glv~~vv  184 (257)
T COG1024         107 GYALGGGLELALACDIRIAAED--AKFGLPEVNLGLLPGDGGTQRLPRLLGRGRAKELLLTGEPISAAEALELGLVDEVV  184 (257)
T ss_pred             ceEeechhhhhhcCCeEEecCC--cEecCcccccccCCCCcHHHHHHHhcCHHHHHHHHHcCCcCCHHHHHHcCCcCeee
Confidence            6899999999999999999998  99999999999999889999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccccccCCCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHhhCCCCCcH
Q psy9056          81 EPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAP  160 (359)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (359)
                      ++.            +++.+.+.+++++++. ++.                                           +.
T Consensus       185 ~~~------------~~l~~~a~~~a~~~a~-~~~-------------------------------------------a~  208 (257)
T COG1024         185 PDA------------EELLERALELARRLAA-PPL-------------------------------------------AL  208 (257)
T ss_pred             CCH------------HHHHHHHHHHHHHHcc-CHH-------------------------------------------HH
Confidence            852            6899999999999997 331                                           22


Q ss_pred             HHHHHHHHHhhccChhhHHHHHHHHhhhhhcChhhHHHHHhHhhhhhhh
Q psy9056         161 LKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQTECK  209 (359)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~s~~~~~~~~af~~k~~~~  209 (359)
                      ..++..++.....++++.+..|...+...+.++|++|++++|++ |+|.
T Consensus       209 ~~~k~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~eg~~a~~~-r~p~  256 (257)
T COG1024         209 AATKRLVRAALEADLAEALEAEALAFARLFSSEDFREGVRAFLE-RKPV  256 (257)
T ss_pred             HHHHHHHHHhhhccHHHHHHHHHHHHHHHhcChhHHHHHHHHHc-cCCC
Confidence            24556666665666889999999998888999999999999999 7654

>PRK12478 enoyl-CoA hydratase; Provisional

Probab=99.94  E-value=4.8e-26  Score=215.40  Aligned_cols=151  Identities=19%  Similarity=0.110  Sum_probs=132.7

Q ss_pred             CCCCchHHHHHHhcCEEEEecCCceEEeccccCC-CCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCccee
Q psy9056           1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVML-GLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQL   79 (359)
Q Consensus         1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~-Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~   79 (359)
                      |+|+|||++|+++||+|||+++  ++|++||+++ |+++  ++++  .+++|..++++|++||++++|+||+++||||++
T Consensus       121 G~a~GgG~~LalacD~ria~~~--A~f~~pe~~l~G~~~--~~~~--~~~vG~~~A~~llltg~~i~A~eA~~~GLV~~v  194 (298)
T PRK12478        121 GWCVGGASDYALCADIVIASDD--AVIGTPYSRMWGAYL--TGMW--LYRLSLAKVKWHSLTGRPLTGVQAAEAELINEA  194 (298)
T ss_pred             cEEehhHHHHHHHCCEEEEcCC--cEEeccccccccCCc--hhHH--HHHhhHHHHHHHHHcCCccCHHHHHHcCCccee
Confidence            6899999999999999999998  9999999997 9875  3333  356999999999999999999999999999999


Q ss_pred             cCCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccccccCCCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHhhCCCCCc
Q psy9056          80 VEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPA  159 (359)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (359)
                      ||+             +++++++.+++++++..|+...                                          
T Consensus       195 v~~-------------~~l~~~a~~~a~~la~~~p~a~------------------------------------------  219 (298)
T PRK12478        195 VPF-------------ERLEARVAEVATELARIPLSQL------------------------------------------  219 (298)
T ss_pred             cCH-------------HHHHHHHHHHHHHHHhCCHHHH------------------------------------------
Confidence            998             8999999999999999877322                                          


Q ss_pred             HHHHHHHHHHhhc-cChhhHHHHHHHHhhhhhcChhhH--------HHHHhHhhhhhhhhcCC
Q psy9056         160 PLKILDVVRTGIE-KGPSAGYEAEAEGFSQLAMTPQSK--------GLMGLFRAQTECKKNRL  213 (359)
Q Consensus       160 ~~~~~~~~~~~~~-~~~~~~~~~e~~~~~~~~~s~~~~--------~~~~af~~k~~~~~~~~  213 (359)
                       ..+|++++.... .+++++++.|.+.+..++.|+|++        ||+.+|++||+|.|..+
T Consensus       220 -~~~K~~l~~~~~~~~l~~~~~~e~~~~~~~~~s~d~~e~~~~~~~egv~Af~ekR~p~f~~~  281 (298)
T PRK12478        220 -QAQKLIVNQAYENMGLASTQTLGGILDGLMRNTPDALEFIRTAETQGVRAAVERRDGPFGDY  281 (298)
T ss_pred             -HHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHhcCCccccc
Confidence             245666676655 468999999999999999999997        59999999999998865

>PRK06072 enoyl-CoA hydratase; Provisional

Probab=99.94  E-value=4.7e-26  Score=210.33  Aligned_cols=149  Identities=18%  Similarity=0.177  Sum_probs=132.7

Q ss_pred             CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceec
Q psy9056           1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLV   80 (359)
Q Consensus         1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~   80 (359)
                      |.|+|||++|+++|||||++++  ++|++||+++|++|++|+++++++++|. +++++++||++++++||+++||||+ +
T Consensus        98 G~a~GgG~~lal~cD~~ia~~~--a~f~~~~~~~Gl~p~~g~~~~l~~~~g~-~a~~lll~g~~~~a~eA~~~Glv~~-~  173 (248)
T PRK06072         98 GVTAGACIGIALSTDFKFASRD--VKFVTAFQRLGLASDTGVAYFLLKLTGQ-RFYEILVLGGEFTAEEAERWGLLKI-S  173 (248)
T ss_pred             CeeehHHHHHHHhCCEEEEcCC--CEEecchhhcCcCCCchHHHHHHHHhhH-HHHHHHHhCCccCHHHHHHCCCccc-c
Confidence            6899999999999999999998  9999999999999999999999999996 8999999999999999999999995 3


Q ss_pred             CCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccccccCCCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHhhCCCCCcH
Q psy9056          81 EPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAP  160 (359)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (359)
                      +               ++.+.+.+++++++..|+..                                           .
T Consensus       174 ~---------------~~~~~a~~~a~~la~~~~~a-------------------------------------------~  195 (248)
T PRK06072        174 E---------------DPLSDAEEMANRISNGPFQS-------------------------------------------Y  195 (248)
T ss_pred             c---------------hHHHHHHHHHHHHHhCCHHH-------------------------------------------H
Confidence            2               25678899999999887632                                           2


Q ss_pred             HHHHHHHHHhhccChhhHHHHHHHHhhhhhcChhhHHHHHhHhhhhhhhhc
Q psy9056         161 LKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQTECKKN  211 (359)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~s~~~~~~~~af~~k~~~~~~  211 (359)
                      ..+|+.++.....++++.++.|.+.+..++.++|+++++.+|++||+|++.
T Consensus       196 ~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~d~~eg~~af~~kr~p~~~  246 (248)
T PRK06072        196 IAAKRMINLVLYNDLEEFLEYESAIQGYLGKTEDFKEGISSFKEKREPKFK  246 (248)
T ss_pred             HHHHHHHHHHhhcCHHHHHHHHHHHHHHHhCChhHHHHHHHHhcCCCCCCC
Confidence            245667777667888999999999999999999999999999999998763

>PRK07827 enoyl-CoA hydratase; Provisional

Probab=99.94  E-value=2.5e-26  Score=213.63  Aligned_cols=149  Identities=16%  Similarity=0.212  Sum_probs=134.2

Q ss_pred             CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceec
Q psy9056           1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLV   80 (359)
Q Consensus         1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~   80 (359)
                      |.|+|||++|+++|||||++++  ++|++||+++|++|++|+++++++++ ..++++|+++|++++++||+++||||+++
T Consensus       110 G~a~GgG~~lalacD~ria~~~--a~f~~pe~~~Gl~p~~g~~~~l~~l~-~~~a~~l~l~g~~~~a~eA~~~Glv~~v~  186 (260)
T PRK07827        110 GHVRAGGFGLVGACDIVVAGPE--STFALTEARIGVAPAIISLTLLPRLS-PRAAARYYLTGEKFGAAEAARIGLVTAAA  186 (260)
T ss_pred             CeeecchhhHHHhCCEEEEcCC--CEEeCcccccCCCCCcccchhHHhhh-HHHHHHHHHhCCccCHHHHHHcCCcccch
Confidence            6799999999999999999988  99999999999999999999999875 56899999999999999999999999986


Q ss_pred             CCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccccccCCCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHhhCCCCCcH
Q psy9056          81 EPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAP  160 (359)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (359)
                      ++               +++.+.++++++++.++.                                           +.
T Consensus       187 ~~---------------l~~~a~~~a~~la~~~~~-------------------------------------------a~  208 (260)
T PRK07827        187 DD---------------VDAAVAALLADLRRGSPQ-------------------------------------------GL  208 (260)
T ss_pred             HH---------------HHHHHHHHHHHHHhCCHH-------------------------------------------HH
Confidence            43               888999999999988763                                           23


Q ss_pred             HHHHHHHHHhhccChhhHHHHHHHHhhhhhcChhhHHHHHhHhhhhhhhh
Q psy9056         161 LKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQTECKK  210 (359)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~s~~~~~~~~af~~k~~~~~  210 (359)
                      ..+|+.++.....++++.++.|.+.+..++.++++++++.+|++||+|++
T Consensus       209 ~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~kr~p~~  258 (260)
T PRK07827        209 AESKALTTAAVLAGFDRDAEELTEESARLFVSDEAREGMTAFLQKRPPRW  258 (260)
T ss_pred             HHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcChhHHHHHHHHhcCCCCCC
Confidence            35667777777788999999999999999999999999999999998765

>PRK05617 3-hydroxyisobutyryl-CoA hydrolase; Provisional

Probab=99.93  E-value=1.5e-26  Score=222.60  Aligned_cols=191  Identities=17%  Similarity=0.107  Sum_probs=146.2

Q ss_pred             CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceec
Q psy9056           1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLV   80 (359)
Q Consensus         1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~   80 (359)
                      |.|+|||++|+++|||||++++  ++|++||+++|++|++|++++|+++.| ..+++|++||++++++||+++|||++++
T Consensus       109 G~a~GgG~~LalacD~ria~~~--a~f~~pe~~lGl~P~~g~~~~L~r~~g-~~a~~llltG~~i~A~eA~~~GLv~~vv  185 (342)
T PRK05617        109 GIVMGGGVGISAHGSHRIVTER--TKMAMPETGIGFFPDVGGTYFLSRAPG-ALGTYLALTGARISAADALYAGLADHFV  185 (342)
T ss_pred             CEEEccHhHHhhhCCEEEEcCC--CEeeCCccccCcCCCccceeEehhccc-HHHHHHHHcCCCCCHHHHHHcCCcceec
Confidence            6899999999999999999988  999999999999999999999999877 7899999999999999999999999999


Q ss_pred             CCCCCCCCCcchhhHHHHHHHHHHHH------------HHHhcCccccccCCCC--CC---------chhhhhhhhhhhh
Q psy9056          81 EPLGPGLNHPEERTMEYLEEVAVNTA------------SQLASGKLKINRTKPM--IP---------DKVLDVALKFEFV  137 (359)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~~~~~------------~~l~~~~~~~~~~k~~--~~---------~~~~~~~~~~~~~  137 (359)
                      |+             +++.....+++            ..+.+...+... ..+  ..         ..+.+..   .+.
T Consensus       186 ~~-------------~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~---~~l  248 (342)
T PRK05617        186 PS-------------ADLPALLDALISLRWDSGADVVDAALAAFATPAPA-SELAAQRAWIDECFAGDTVEDII---AAL  248 (342)
T ss_pred             CH-------------HHHHHHHHHHHhcCCccchhHHHHHHHHhccCCCc-chhHHHHHHHHHHhCCCCHHHHH---HHH
Confidence            98             66655432222            112221111110 000  00         0011111   122


Q ss_pred             hhHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHhhccChhhHHHHHHHHhhhhhcChhhHHHHHhHh-hh-hhhhhc
Q psy9056         138 RNQIFGKAKEKVMKMSGGLYPAPLKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFR-AQ-TECKKN  211 (359)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~s~~~~~~~~af~-~k-~~~~~~  211 (359)
                      ++..-+++...+.+....++.+...+++++++....+++++++.|.+.+..++.++|+++|+++|+ +| |+|++.
T Consensus       249 ~~~~~~~a~~~a~~i~~~sp~a~~~~k~~l~~~~~~~l~~~~~~e~~~~~~~~~~~d~~egv~afl~ek~r~p~~~  324 (342)
T PRK05617        249 EADGGEFAAKTADTLRSRSPTSLKVTLEQLRRARGLTLEECLRRELRLALAMLRSPDFVEGVRAVLIDKDRNPKWS  324 (342)
T ss_pred             HhccHHHHHHHHHHHHhCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCchhhccceEEEcCCCCCCCC
Confidence            222235666677777777788888999999998888999999999999999999999999999997 76 777764

>PRK05870 enoyl-CoA hydratase; Provisional

Probab=99.93  E-value=3.2e-26  Score=211.61  Aligned_cols=145  Identities=19%  Similarity=0.143  Sum_probs=132.4

Q ss_pred             CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceec
Q psy9056           1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLV   80 (359)
Q Consensus         1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~   80 (359)
                      |.|+|||++|+++|||||++++  ++|++||+++|++|++|++++|++++|..++++|++||++++++||+++||||+++
T Consensus       104 G~a~GgG~~lal~cD~ria~~~--a~f~~pe~~~G~~p~~g~~~~l~~~~G~~~a~~l~ltg~~~~a~eA~~~Glv~~vv  181 (249)
T PRK05870        104 GAAVGAGLNLALAADVRIAGPK--ALFDARFQKLGLHPGGGATWMLQRAVGPQVARAALLFGMRFDAEAAVRHGLALMVA  181 (249)
T ss_pred             CEeEchhHHHHHhCCEEEEcCC--CEEeCcccccCcCCCCcceeeHHhhhCHHHHHHHHHhCCccCHHHHHHcCCHHHHH
Confidence            6799999999999999999988  99999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccccccCCCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHhhCCCCCcH
Q psy9056          81 EPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAP  160 (359)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (359)
                       +             + +.+.+.+++++++..|+..                                           .
T Consensus       182 -~-------------~-l~~~a~~~a~~la~~~~~a-------------------------------------------~  203 (249)
T PRK05870        182 -D-------------D-PVAAALELAAGPAAAPREL-------------------------------------------V  203 (249)
T ss_pred             -h-------------h-HHHHHHHHHHHHHhCCHHH-------------------------------------------H
Confidence             5             3 7789999999999988732                                           2


Q ss_pred             HHHHHHHHHhhc-cChhhHHHHHHHHhhhhhcChhhHHHHHhHhhh
Q psy9056         161 LKILDVVRTGIE-KGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQ  205 (359)
Q Consensus       161 ~~~~~~~~~~~~-~~~~~~~~~e~~~~~~~~~s~~~~~~~~af~~k  205 (359)
                      ..+|+.++.... .+++++++.|.+.+..++.++|++|++++|+++
T Consensus       204 ~~~K~~~~~~~~~~~l~~~~~~e~~~~~~~~~~~d~~eg~~af~~~  249 (249)
T PRK05870        204 LATKASMRATASLAQHAAAVEFELGPQAASVQSPEFAARLAAAQRR  249 (249)
T ss_pred             HHHHHHHHhccccCCHHHHHHHHHHHHHHHhcChhHHHHHHHHhcC
Confidence            356677777766 788999999999999999999999999999874

>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional

Probab=99.93  E-value=3.1e-26  Score=231.35  Aligned_cols=153  Identities=18%  Similarity=0.183  Sum_probs=141.4

Q ss_pred             CCCCchH-HHHHHhcCEEEEe-------cCCceEEeccccCCCCCCCcchHhHHhhh-cChHHHHHH--HhcCCCCCHHH
Q psy9056           1 MFAEPSL-ATVALACHYRIVV-------KDKKTGLGLPEVMLGLLPGAGGTQRLPKL-TALPNVLDM--TLTGKTLKADK   69 (359)
Q Consensus         1 ~~a~GgG-~~lalacD~ria~-------~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~-~g~~~a~~~--~ltg~~~~a~e   69 (359)
                      |+|+||| ++|+++||+|||+       ++  ++|++||+++|++|++|++++|+++ +|..+|++|  ++||++++++|
T Consensus       379 G~a~GgG~~eLalacD~~ia~~~~~~~~~~--a~f~~pe~~~Gl~p~~gg~~~L~r~~vG~~~A~~~~l~~tg~~i~A~e  456 (550)
T PRK08184        379 GSCFAGTLAELALAADRSYMLALPDDNDPA--PAITLSALNFGLYPMVNGLSRLARRFYGEPDPLAAVRAKIGQPLDADA  456 (550)
T ss_pred             CceehhHHHHHHHHCChhhhcCCCCCCCCC--CEEECccccccCCCCCCcHHHhHHHhcChHHHHHHHHHHhCCcCCHHH
Confidence            6899999 9999999999999       77  9999999999999999999999998 799999997  58999999999


Q ss_pred             HHHcCCcceecCCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccccccCCCCCCchhhhhhhhhhhhhhHHHHHHHHHH
Q psy9056          70 AKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDVALKFEFVRNQIFGKAKEKV  149 (359)
Q Consensus        70 A~~~Glv~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (359)
                      |+++||||+++|+             +++++++.++++++++.++.                                  
T Consensus       457 A~~~GLv~~vv~~-------------~~l~~~a~~~a~~ia~~~p~----------------------------------  489 (550)
T PRK08184        457 AEELGLVTAAPDD-------------IDWEDEVRIALEERASLSPD----------------------------------  489 (550)
T ss_pred             HHHcCCcccccCh-------------HHHHHHHHHHHHHHHhCCHH----------------------------------
Confidence            9999999999998             89999999999999998873                                  


Q ss_pred             HHhhCCCCCcHHHHHHHHHHhhccChhhH-HHHHHHHhhhhhcChhhHH---HHHhHhhhhhhhhc
Q psy9056         150 MKMSGGLYPAPLKILDVVRTGIEKGPSAG-YEAEAEGFSQLAMTPQSKG---LMGLFRAQTECKKN  211 (359)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~~~~~~~~~s~~~~~---~~~af~~k~~~~~~  211 (359)
                               +...+|+.++.+...+++++ +..|.+.+..+++++|.+|   |+.+|++||+|.|.
T Consensus       490 ---------a~~~~K~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~d~~e~~~g~~af~ekr~~~f~  546 (550)
T PRK08184        490 ---------ALTGMEANLRFAGPETMETRIFGRLTAWQNWIFQRPNAVGEKGALKVYGTGQKAQFD  546 (550)
T ss_pred             ---------HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCCcccccchHHHHhccCCCCCCC
Confidence                     22356677888888999999 9999999999999999999   99999999999874

>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase

Probab=99.93  E-value=3.9e-26  Score=229.88  Aligned_cols=153  Identities=16%  Similarity=0.147  Sum_probs=140.7

Q ss_pred             CCCCchH-HHHHHhcCEEEE-------ecCCceEEeccccCCCCCCCcchHhHHhhhc-ChHHH--HHHHhcCCCCCHHH
Q psy9056           1 MFAEPSL-ATVALACHYRIV-------VKDKKTGLGLPEVMLGLLPGAGGTQRLPKLT-ALPNV--LDMTLTGKTLKADK   69 (359)
Q Consensus         1 ~~a~GgG-~~lalacD~ria-------~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~-g~~~a--~~~~ltg~~~~a~e   69 (359)
                      |+|.||| ++|+++||+||+       +++  ++|++||+++|++|++|++++|++++ |..++  ++|++||++++|+|
T Consensus       375 G~a~GgG~~eLalacD~~ia~~~~~~~~~~--a~f~~~e~~lGl~p~~gg~~~L~~~v~G~~~a~~~~~~ltg~~i~A~e  452 (546)
T TIGR03222       375 GSCFAGTLAELAFAADRSYMLAFPDNNDPE--PAITLSELNFGLYPMVNGLSRLATRFYAEPAPVAAVRDKIGQALDAEE  452 (546)
T ss_pred             CeEeHHHHHHHHHhCceeeecCCCCCCCCC--CEEeCCccccccCCCcCcHHHHHHHhcCchhHHHHHHHHhCCCCCHHH
Confidence            6899999 999999999999       887  99999999999999999999999998 99888  55999999999999


Q ss_pred             HHHcCCcceecCCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccccccCCCCCCchhhhhhhhhhhhhhHHHHHHHHHH
Q psy9056          70 AKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDVALKFEFVRNQIFGKAKEKV  149 (359)
Q Consensus        70 A~~~Glv~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (359)
                      |+++|||++++|+             +++.+++.++++++++.++..                                 
T Consensus       453 A~~~Glv~~vv~~-------------~~l~~~a~~~a~~la~~~p~a---------------------------------  486 (546)
T TIGR03222       453 AERLGLVTAAPDD-------------IDWEDEIRIALEERASFSPDA---------------------------------  486 (546)
T ss_pred             HHHcCCcccccCc-------------hHHHHHHHHHHHHHHhcCHHH---------------------------------
Confidence            9999999999998             889999999999999988732                                 


Q ss_pred             HHhhCCCCCcHHHHHHHHHHhhccChhhH-HHHHHHHhhhhhcChhhHH---HHHhHhhhhhhhhc
Q psy9056         150 MKMSGGLYPAPLKILDVVRTGIEKGPSAG-YEAEAEGFSQLAMTPQSKG---LMGLFRAQTECKKN  211 (359)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~~~~~~~~~s~~~~~---~~~af~~k~~~~~~  211 (359)
                                ...+|+.++.....+++++ +..|.+.+..++.++|.+|   |+.+|++||+|.|.
T Consensus       487 ----------~~~~K~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~d~~e~~~g~~af~ekr~p~f~  542 (546)
T TIGR03222       487 ----------LTGLEANLRFAGPETMETRIFGRLTAWQNWIFNRPNAVGENGALKVYGSGKKAQFD  542 (546)
T ss_pred             ----------HHHHHHHHhhcCCcChhhhHHHHHHHHHHHHhcCCcccchhhHHHHHccCCCCCCC
Confidence                      2245677788888999999 9999999999999999999   99999999998773

In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.

>PLN02874 3-hydroxyisobutyryl-CoA hydrolase-like protein

Probab=99.93  E-value=4.5e-26  Score=221.98  Aligned_cols=194  Identities=14%  Similarity=0.095  Sum_probs=141.6

Q ss_pred             CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceec
Q psy9056           1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLV   80 (359)
Q Consensus         1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~   80 (359)
                      |+|+|||++|+++||+||++++  ++|++||+++|++|++|++++|++++|. .+++|++||++++++||+++|||+++|
T Consensus       114 G~a~GgG~~LalacD~ria~~~--a~f~~pe~~iGl~p~~g~~~~L~rl~g~-~a~~l~ltG~~i~a~eA~~~GLv~~vv  190 (379)
T PLN02874        114 GLVMGGGAGLMVPMKFRVVTEK--TVFATPEASVGFHTDCGFSYILSRLPGH-LGEYLALTGARLNGKEMVACGLATHFV  190 (379)
T ss_pred             CeEEecHHHHHHhCCeEEEeCC--eEEeccccccCcCCChhHHHHHHhhhHH-HHHHHHHcCCcccHHHHHHcCCccEEe
Confidence            6899999999999999999988  9999999999999999999999999884 899999999999999999999999999


Q ss_pred             CCCCCCCCCcchhhHHHHHHHHHHH--------------HHHHhcCccc-cccCCCCCCchhhh------hhhhhhhhhh
Q psy9056          81 EPLGPGLNHPEERTMEYLEEVAVNT--------------ASQLASGKLK-INRTKPMIPDKVLD------VALKFEFVRN  139 (359)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~~~~--------------~~~l~~~~~~-~~~~k~~~~~~~~~------~~~~~~~~~~  139 (359)
                      |+             +++.+.+.++              .++.....+. .......+ +.+..      ....+..+..
T Consensus       191 ~~-------------~~l~~~~~~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~i~~~f~~~~~~eii~al~~  256 (379)
T PLN02874        191 PS-------------EKLPELEKRLLNLNSGDESAVQEAIEEFSKDVQADEDSILNKQ-SWINECFSKDTVEEIIKAFES  256 (379)
T ss_pred             CH-------------HHHHHHHHHHHhcCCCCHHHHHHHHHHhhcccCCCcchhHHHH-HHHHHHhCCCCHHHHHHHHhh
Confidence            98             6665421111              1111100000 00000000 00000      0111111110


Q ss_pred             ----HHHHHHHHHHHHhhCCCCCcHHHHHHHHHHhhccChhhHHHHHHHHhhhhhc---ChhhHHHHHhHh-hh-hhhhh
Q psy9056         140 ----QIFGKAKEKVMKMSGGLYPAPLKILDVVRTGIEKGPSAGYEAEAEGFSQLAM---TPQSKGLMGLFR-AQ-TECKK  210 (359)
Q Consensus       140 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~---s~~~~~~~~af~-~k-~~~~~  210 (359)
                          ..-.|+.+.+.+...+++.+...++++++.+...+++++++.|.+....++.   ++|++||+++|+ +| |+|+|
T Consensus       257 ~~~~~~~~~A~~~a~~l~~~sP~al~~tk~~~~~~~~~~l~~~l~~e~~~~~~~~~~~~~~D~~EGv~AflidK~r~P~w  336 (379)
T PLN02874        257 EASKTGNEWIKETLKGLRRSSPTGLKITLRSIREGRKQSLAECLKKEFRLTMNILRSTVSDDVYEGIRALVIDKDNAPKW  336 (379)
T ss_pred             cccccccHHHHHHHHHHHhcChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCcCcchhhccceEEEcCCCCCCC
Confidence                0113455666677777778888999999998888999999999988888877   999999999997 88 77777


Q ss_pred             c
Q psy9056         211 N  211 (359)
Q Consensus       211 ~  211 (359)
                      .
T Consensus       337 ~  337 (379)
T PLN02874        337 N  337 (379)
T ss_pred             C
Confidence            4

>PRK07112 polyketide biosynthesis enoyl-CoA hydratase; Validated

Probab=99.93  E-value=1.1e-25  Score=208.71  Aligned_cols=149  Identities=14%  Similarity=0.081  Sum_probs=128.5

Q ss_pred             CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceec
Q psy9056           1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLV   80 (359)
Q Consensus         1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~   80 (359)
                      |.|+|||++|+++|||||++++  ++|++||+++|++|+++ +.+|++++|..++++|+++|++++++||+++||||+++
T Consensus       105 G~a~GgG~~lala~D~~ia~~~--a~f~~pe~~~Gl~p~~~-~~~l~~~vg~~~a~~l~l~g~~~~a~eA~~~Glv~~vv  181 (255)
T PRK07112        105 GKVNAGGIGFVAASDIVIADET--APFSLSELLFGLIPACV-LPFLIRRIGTQKAHYMTLMTQPVTAQQAFSWGLVDAYG  181 (255)
T ss_pred             cEEEcchhHHHHcCCEEEEcCC--CEEeCchhhhccCcchh-hHHHHHHhCHHHHHHHHHhCCcccHHHHHHcCCCceec
Confidence            6799999999999999999988  99999999999999865 56799999999999999999999999999999999999


Q ss_pred             CCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccccccCCCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHhhCCCCCcH
Q psy9056          81 EPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAP  160 (359)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (359)
                      |+             ++.  .+.+++++++..++..                                           .
T Consensus       182 ~~-------------~~~--~~~~~a~~l~~~~p~a-------------------------------------------~  203 (255)
T PRK07112        182 AN-------------SDT--LLRKHLLRLRCLNKAA-------------------------------------------V  203 (255)
T ss_pred             Cc-------------HHH--HHHHHHHHHHhCCHHH-------------------------------------------H
Confidence            97             432  4677899998887632                                           2


Q ss_pred             HHHHHHHHHhhccChhhHHHHHHHHhhhhhcChhhHHHHHhHhhhhhhhhc
Q psy9056         161 LKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQTECKKN  211 (359)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~s~~~~~~~~af~~k~~~~~~  211 (359)
                      ..+|+.++.. ..++.+.++.|.+.+..++.++|+++++.+|++||+|.+.
T Consensus       204 ~~~K~~~~~~-~~~~~~~~~~e~~~~~~~~~~~~~~eg~~af~~kr~p~~~  253 (255)
T PRK07112        204 ARYKSYASTL-DDTVAAARPAALAANIEMFADPENLRKIARYVETGKFPWE  253 (255)
T ss_pred             HHHHHHHHHh-hhhHHHHHHHHHHHHHHHHcChHHHHHHHHHHcCCCCCCC
Confidence            2345555543 4467889999999999999999999999999999987764

>PRK07110 polyketide biosynthesis enoyl-CoA hydratase; Validated

Probab=99.93  E-value=2.1e-25  Score=206.18  Aligned_cols=144  Identities=18%  Similarity=0.157  Sum_probs=133.4

Q ss_pred             CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceec
Q psy9056           1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLV   80 (359)
Q Consensus         1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~   80 (359)
                      |.|+|||++|+++||+||++++  ++|++||+++|++|++|++++|++++|..++++|++||++++++||+++|||++++
T Consensus       103 G~a~GgG~~lal~cD~~ia~~~--a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~~a~~llltg~~~~a~eA~~~Glv~~vv  180 (249)
T PRK07110        103 GHAIGGGLVLGLYADIVVLSRE--SVYTANFMKYGFTPGMGATAILPEKLGLALGQEMLLTARYYRGAELKKRGVPFPVL  180 (249)
T ss_pred             CceechHHHHHHhCCEEEEeCC--CEecCchhccCCCCCchHHHHHHHHhCHHHHHHHHHcCCccCHHHHHHcCCCeEEe
Confidence            6899999999999999999998  99999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccccccCCCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHhhCCCCCcH
Q psy9056          81 EPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAP  160 (359)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (359)
                      |+             +++.+.+.++++++++.|+.                                           +.
T Consensus       181 ~~-------------~~l~~~a~~~a~~la~~~~~-------------------------------------------a~  204 (249)
T PRK07110        181 PR-------------AEVLEKALELARSLAEKPRH-------------------------------------------SL  204 (249)
T ss_pred             Ch-------------HHHHHHHHHHHHHHHhCCHH-------------------------------------------HH
Confidence            98             88999999999999998773                                           22


Q ss_pred             HHHHHHHHHhhccChhhHHHHHHHHhhhhhcChhhHHHHHhH
Q psy9056         161 LKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLF  202 (359)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~s~~~~~~~~af  202 (359)
                      ..+|+.++......+++.++.|.+.+..++.++|++|++.+.
T Consensus       205 ~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~~~~egi~~~  246 (249)
T PRK07110        205 VLLKDHLVADRRRRLPEVIEQEVAMHEKTFHQPEVKRRIESL  246 (249)
T ss_pred             HHHHHHHHHhhhccHHHHHHHHHHHHHHHhCCHhHHHHHHHh
Confidence            356677777777889999999999999999999999999875

>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=99.93  E-value=5.1e-25  Score=207.40  Aligned_cols=142  Identities=40%  Similarity=0.589  Sum_probs=136.4

Q ss_pred             CCccEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcCCC
Q psy9056         218 TPVKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPF  297 (359)
Q Consensus       218 ~~~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l  297 (359)
                      +++++|+|||+|.||.+||..++++|++|++||++++.++.+.+.+.+.+++..+.|.+++......+++++++++++.+
T Consensus         3 ~~~~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~   82 (286)
T PRK07819          3 DAIQRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTTDLGDF   82 (286)
T ss_pred             CCccEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeCCHHHh
Confidence            46789999999999999999999999999999999999999999999999999999999888888889999999999889


Q ss_pred             CCccEEEEcccCCHHHHHHHHHHHHHhC-CCCcEEEEcCCCCcHHHHHhhcCCCCcEEeecCC
Q psy9056         298 KNADMVIEAVFEDINIKHQVIKEIEAVV-PPHCVVATNTSAIPITKIAAASKRPDKVRNMGRI  359 (359)
Q Consensus       298 ~~aD~Vi~avp~~~~~k~~v~~~l~~~~-~~~~ii~s~ts~~~~~~l~~~~~~~~rvig~h~~  359 (359)
                      ++||+||||+||+.++|+.+|..+.+++ ++++||+||||+++++.++..+.+|+|++|+|||
T Consensus        83 ~~~d~ViEav~E~~~~K~~l~~~l~~~~~~~~~il~snTS~~~~~~la~~~~~~~r~~g~hf~  145 (286)
T PRK07819         83 ADRQLVIEAVVEDEAVKTEIFAELDKVVTDPDAVLASNTSSIPIMKLAAATKRPGRVLGLHFF  145 (286)
T ss_pred             CCCCEEEEecccCHHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCCccEEEEecC
Confidence            9999999999999999999999999998 8999999999999999999999999999999997

>PLN02988 3-hydroxyisobutyryl-CoA hydrolase

Probab=99.93  E-value=1.8e-25  Score=217.11  Aligned_cols=189  Identities=16%  Similarity=0.170  Sum_probs=146.8

Q ss_pred             CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceec
Q psy9056           1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLV   80 (359)
Q Consensus         1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~   80 (359)
                      |+|+|||++|+++|||||++++  ++|++||+++|++|++|++++|++++|. .+++|++||+++++++|+++||++++|
T Consensus       114 G~a~GGG~~Lal~~D~rvate~--a~f~mPE~~iGl~Pd~G~s~~L~rl~G~-~~~~l~LTG~~i~a~eA~~~GLv~~vv  190 (381)
T PLN02988        114 GIVMGGGAGVSVHGRFRIATEN--TVFAMPETALGLFPDVGASYFLSRLPGF-FGEYVGLTGARLDGAEMLACGLATHFV  190 (381)
T ss_pred             CeEeehhhHHhhcCCeEEEcCC--cEEeChhhhcCcCCCccHHHHHHHHHHH-HHHHHHHcCCCCCHHHHHHcCCceEec
Confidence            7899999999999999999988  9999999999999999999999999996 689999999999999999999999999


Q ss_pred             CCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCcc-ccccCCCCC-------C----------------chhhhhhhhhhh
Q psy9056          81 EPLGPGLNHPEERTMEYLEEVAVNTASQLASGKL-KINRTKPMI-------P----------------DKVLDVALKFEF  136 (359)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~-~~~~~k~~~-------~----------------~~~~~~~~~~~~  136 (359)
                      |+             +++.+.+.+++ +++..++ .+...+..+       +                ..+.+.+..+..
T Consensus       191 ~~-------------~~l~~~~~~la-~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~f~~~~~~~i~~~L~~  256 (381)
T PLN02988        191 PS-------------TRLTALEADLC-RIGSNDPTFASTILDAYTQHPRLKPQSAYHRLDVIDRCFSRRTVEEIISALER  256 (381)
T ss_pred             CH-------------hHHHHHHHHHH-HhhccCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCCHHHHHHHHHh
Confidence            98             66777666666 4443332 111010000       0                112222222221


Q ss_pred             hhh-HHHHHHHHHHHHhhCCCCCcHHHHHHHHHHhhccChhhHHHHHHHHhhhhhc---ChhhHHHHHh-Hhhhh
Q psy9056         137 VRN-QIFGKAKEKVMKMSGGLYPAPLKILDVVRTGIEKGPSAGYEAEAEGFSQLAM---TPQSKGLMGL-FRAQT  206 (359)
Q Consensus       137 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~---s~~~~~~~~a-f~~k~  206 (359)
                      ... ..-.|..+.+.....+++.+...+++.++++...++.++++.|.+...+++.   ++||.|||++ .++|.
T Consensus       257 ~~~~~~~~wa~~~~~~l~~~sP~sl~vt~~~~~~~~~~sl~e~~~~e~~~~~~~~~~~~~~DF~EGVRA~LiDKd  331 (381)
T PLN02988        257 EATQEADGWISATIQALKKASPASLKISLRSIREGRLQGVGQCLIREYRMVCHVMKGEISKDFVEGCRAILVDKD  331 (381)
T ss_pred             hccccccHHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCchHHHhHHHHhcCCC
Confidence            100 1235666677777777888999999999999999999999999999999998   7999999997 45564

>PRK06190 enoyl-CoA hydratase; Provisional

Probab=99.92  E-value=1.9e-24  Score=200.52  Aligned_cols=147  Identities=23%  Similarity=0.233  Sum_probs=128.9

Q ss_pred             CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceec
Q psy9056           1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLV   80 (359)
Q Consensus         1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~   80 (359)
                      |.|+|||++|+++||||||+++  ++|++||+++|++|++|++++|++++|..++++|++||++++++||+++||||+++
T Consensus       103 G~a~GgG~~lalacD~~ia~~~--a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~ltg~~~~a~eA~~~GLv~~vv  180 (258)
T PRK06190        103 GAAVTGGLELALACDILIASER--ARFADTHARVGILPGWGLSVRLPQKVGIGRARRMSLTGDFLDAADALRAGLVTEVV  180 (258)
T ss_pred             CEeecHHHHHHHhCCEEEEeCC--CEEECcccccCcCCCccHHHHHHHHhCHHHHHHHHHhCCccCHHHHHHcCCCeEec
Confidence            6899999999999999999998  99999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccccccCCCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHhhCCCCCcH
Q psy9056          81 EPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAP  160 (359)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (359)
                      |+             +++++.+.++++++++.|+.                                           +.
T Consensus       181 ~~-------------~~l~~~a~~~a~~la~~~~~-------------------------------------------a~  204 (258)
T PRK06190        181 PH-------------DELLPRARRLAASIAGNNPA-------------------------------------------AV  204 (258)
T ss_pred             CH-------------hHHHHHHHHHHHHHHcCCHH-------------------------------------------HH
Confidence            98             88999999999999998773                                           22


Q ss_pred             HHHHHHHHHhhccChhhHHHHHHHHhhhhhcC---hhhHHHHHhHhhh
Q psy9056         161 LKILDVVRTGIEKGPSAGYEAEAEGFSQLAMT---PQSKGLMGLFRAQ  205 (359)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~s---~~~~~~~~af~~k  205 (359)
                      ..+|+.++.....++++.++.|.+.+..++.|   +...+....|..+
T Consensus       205 ~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~~~~~~~~~~~~~~~~  252 (258)
T PRK06190        205 RALKASYDDGAAAQTGDALALEAEAARAHNRSVSPDGIAARREAVMAR  252 (258)
T ss_pred             HHHHHHHHHhhcCCHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHh
Confidence            35667777777788999999999999999988   3333433344443

>KOG1679|consensus

Probab=99.91  E-value=2.8e-25  Score=192.30  Aligned_cols=157  Identities=25%  Similarity=0.366  Sum_probs=137.7

Q ss_pred             CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceec
Q psy9056           1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLV   80 (359)
Q Consensus         1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~   80 (359)
                      |+|.|||++|+++||+|+++++  ++||++|++++|+|++|+|++|+|.+|...++++++|++.+++.||...||||++|
T Consensus       133 G~ALGGGLElALACDiRva~s~--akmGLvET~laiiPGaGGtQRLpR~vg~alaKELIftarvl~g~eA~~lGlVnhvv  210 (291)
T KOG1679|consen  133 GAALGGGLELALACDIRVAASS--AKMGLVETKLAIIPGAGGTQRLPRIVGVALAKELIFTARVLNGAEAAKLGLVNHVV  210 (291)
T ss_pred             chhcccchhhhhhccceehhhh--ccccccccceeeecCCCccchhHHHHhHHHHHhHhhhheeccchhHHhcchHHHHH
Confidence            6899999999999999999998  99999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccccccCCCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHhhCCCCCcH
Q psy9056          81 EPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAP  160 (359)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (359)
                      ..-+.+         |...+.+.++++++....|-                                           +.
T Consensus       211 ~qneeg---------daa~~kal~lA~eilp~gPi-------------------------------------------av  238 (291)
T KOG1679|consen  211 EQNEEG---------DAAYQKALELAREILPQGPI-------------------------------------------AV  238 (291)
T ss_pred             hcCccc---------cHHHHHHHHHHHHhccCCch-------------------------------------------hh
Confidence            762222         67888899999998765441                                           22


Q ss_pred             HHHHHHHHHhhccChhhHHHHHHHHhhhhhcChhhHHHHHhHhhhhhhhhc
Q psy9056         161 LKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQTECKKN  211 (359)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~s~~~~~~~~af~~k~~~~~~  211 (359)
                      ...+-+|..+...++..++..|..-+.+..-+.|-.||+.+|.+||+|.+.
T Consensus       239 r~aKlAIn~G~evdiasgl~iEe~CYaq~i~t~drLeglaaf~ekr~p~y~  289 (291)
T KOG1679|consen  239 RLAKLAINLGMEVDIASGLSIEEMCYAQIIPTKDRLEGLAAFKEKRKPEYK  289 (291)
T ss_pred             hHHHHHhccCceecccccccHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcC
Confidence            234455677777888889999988888999999999999999999998774

>PLN02851 3-hydroxyisobutyryl-CoA hydrolase-like protein

Probab=99.91  E-value=5.4e-24  Score=207.41  Aligned_cols=190  Identities=15%  Similarity=0.116  Sum_probs=142.7

Q ss_pred             CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceec
Q psy9056           1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLV   80 (359)
Q Consensus         1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~   80 (359)
                      |+|+|||++|+++|||||++++  ++|++||+++|++|++|++++|++++|. .+++|++||+++++++|+++||+++++
T Consensus       147 G~amGGG~gLal~~D~rVate~--a~famPE~~iGl~PdvG~s~~L~rl~g~-~g~~L~LTG~~i~a~eA~~~GLa~~~v  223 (407)
T PLN02851        147 GITMGCGAGISIPGMFRVVTDK--TVFAHPEVQMGFHPDAGASYYLSRLPGY-LGEYLALTGQKLNGVEMIACGLATHYC  223 (407)
T ss_pred             CEEeeHHHHHHHhCCEEEEeCC--ceEecchhccCCCCCccHHHHHHHhcCH-HHHHHHHhCCcCCHHHHHHCCCceeec
Confidence            7899999999999999999998  9999999999999999999999999996 599999999999999999999999999


Q ss_pred             CCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCcccc-c------------cCCCCCC-----------chhhhhhhhhhh
Q psy9056          81 EPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKI-N------------RTKPMIP-----------DKVLDVALKFEF  136 (359)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~-~------------~~k~~~~-----------~~~~~~~~~~~~  136 (359)
                      |+             +.+ +.+.+.+.++...++.. .            ....+..           +.+.+.+..+..
T Consensus       224 ~~-------------~~l-~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~I~~~F~~~sv~~I~~~L~~  289 (407)
T PLN02851        224 LN-------------ARL-PLIEERLGKLLTDDPAVIEDSLAQYGDLVYPDKSSVLHKIETIDKCFGHDTVEEIIEALEN  289 (407)
T ss_pred             CH-------------hhH-HHHHHHHHhhccCCHHHHHHHHHHhccccCCCcccHHHHHHHHHHHhCCCCHHHHHHHHHh
Confidence            98             333 22333333222211000 0            0000000           112222222222


Q ss_pred             h-hhHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHhhccChhhHHHHHHHHhhhhh---cChhhHHHHHh-Hhhhhh
Q psy9056         137 V-RNQIFGKAKEKVMKMSGGLYPAPLKILDVVRTGIEKGPSAGYEAEAEGFSQLA---MTPQSKGLMGL-FRAQTE  207 (359)
Q Consensus       137 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~---~s~~~~~~~~a-f~~k~~  207 (359)
                      . ......|+...+.....+++.+...+++.++++...+++++++.|.++...++   .++||.|||++ .++|.+
T Consensus       290 ~~~~~~~~wa~~~~~~l~~~SP~Sl~vt~~~~~~~~~~sl~e~l~~E~~l~~~~~~~~~~~DF~EGVRA~LIDKd~  365 (407)
T PLN02851        290 EAASSYDEWCKKALKKIKEASPLSLKVTLQSIREGRFQTLDQCLAREYRISLCGVSKWVSGDFCEGVRARLVDKDF  365 (407)
T ss_pred             cccccchHHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCccchHHHHHHHHhcCCCC
Confidence            1 00124677777777788888999999999999999999999999999999887   58999999997 555653

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=99.91  E-value=9e-24  Score=200.78  Aligned_cols=138  Identities=19%  Similarity=0.240  Sum_probs=124.5

Q ss_pred             CCccEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CC
Q psy9056         218 TPVKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DP  296 (359)
Q Consensus       218 ~~~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~  296 (359)
                      +++++|+|||+|.||.+||..++.+|++|++||++++.++.+...+.+.++...+.+. ..   ....+++++++++ +.
T Consensus         5 ~~i~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~-~~---~~~~~~i~~~~~l~~a   80 (321)
T PRK07066          5 TDIKTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPGAEAALRANVANAWPALERQGL-AP---GASPARLRFVATIEAC   80 (321)
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCC-Ch---hhHHhhceecCCHHHH
Confidence            5689999999999999999999999999999999999999888888877777766653 22   2334678888888 56


Q ss_pred             CCCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCcHHHHHhhcCCCCcEEeecCC
Q psy9056         297 FKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPITKIAAASKRPDKVRNMGRI  359 (359)
Q Consensus       297 l~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~rvig~h~~  359 (359)
                      +++||+||||+||+.++|+.+|+++.+++++++||.||||+++++++++.+.+|+|++|+|||
T Consensus        81 v~~aDlViEavpE~l~vK~~lf~~l~~~~~~~aIlaSnTS~l~~s~la~~~~~p~R~~g~Hff  143 (321)
T PRK07066         81 VADADFIQESAPEREALKLELHERISRAAKPDAIIASSTSGLLPTDFYARATHPERCVVGHPF  143 (321)
T ss_pred             hcCCCEEEECCcCCHHHHHHHHHHHHHhCCCCeEEEECCCccCHHHHHHhcCCcccEEEEecC
Confidence            899999999999999999999999999999999999999999999999999999999999997

>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated

Probab=99.90  E-value=2.5e-23  Score=209.80  Aligned_cols=142  Identities=36%  Similarity=0.552  Sum_probs=137.0

Q ss_pred             CCccEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcCCC
Q psy9056         218 TPVKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPF  297 (359)
Q Consensus       218 ~~~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l  297 (359)
                      .++++|+|||+|.||.+||..++++|++|++||++++.++.+..+++..+++..+.|+++....+..+++++.+++++++
T Consensus         5 ~~i~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~~   84 (507)
T PRK08268          5 PSIATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRPVEALADL   84 (507)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHHh
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999999999888


Q ss_pred             CCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCcHHHHHhhcCCCCcEEeecCC
Q psy9056         298 KNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPITKIAAASKRPDKVRNMGRI  359 (359)
Q Consensus       298 ~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~rvig~h~~  359 (359)
                      .+||+||||+||+.++|+.+|.++...+++++||+||||+++++++++.+.+|+|++|+|||
T Consensus        85 ~~aDlViEav~E~~~vK~~vf~~l~~~~~~~ailasntStl~i~~la~~~~~p~r~~G~hff  146 (507)
T PRK08268         85 ADCDLVVEAIVERLDVKQALFAQLEAIVSPDCILATNTSSLSITAIAAALKHPERVAGLHFF  146 (507)
T ss_pred             CCCCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCcccEEEEeec
Confidence            99999999999999999999999999999999999999999999999999999999999997

>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC

Probab=99.90  E-value=2.2e-23  Score=209.73  Aligned_cols=142  Identities=35%  Similarity=0.561  Sum_probs=136.1

Q ss_pred             CCccEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcCCC
Q psy9056         218 TPVKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPF  297 (359)
Q Consensus       218 ~~~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l  297 (359)
                      ..+++|+|||+|.||.+||..++++|++|++||++++.++.+...++..++...+.|.+++...+..+++++++++++++
T Consensus         3 ~~~~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~l   82 (503)
T TIGR02279         3 INVVTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIPVTDLHAL   82 (503)
T ss_pred             CCccEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEEeCCHHHh
Confidence            35789999999999999999999999999999999999999999999999999999999998888999999999999888


Q ss_pred             CCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCcHHHHHhhcCCCCcEEeecCC
Q psy9056         298 KNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPITKIAAASKRPDKVRNMGRI  359 (359)
Q Consensus       298 ~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~rvig~h~~  359 (359)
                      ++||+||+|+||+.++|+.+|.++.+++++++||+||||+++++++++.+..|.|++|+|||
T Consensus        83 ~~aDlVIEav~E~~~vK~~vf~~l~~~~~~~~IlasnTStl~i~~iA~~~~~p~r~~G~HFf  144 (503)
T TIGR02279        83 ADAGLVIEAIVENLEVKKALFAQLEELCPADTIIASNTSSLSITAIAAGLARPERVAGLHFF  144 (503)
T ss_pred             CCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCCCCHHHHHHhcCcccceEEEecc
Confidence            99999999999999999999999999999999999999999999999999999999999997

This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.

>KOG2304|consensus

Probab=99.90  E-value=5e-24  Score=186.60  Aligned_cols=142  Identities=32%  Similarity=0.548  Sum_probs=132.2

Q ss_pred             CCccEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHH-----Hhhhccccccc
Q psy9056         218 TPVKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDR-----DRYLASLVGTL  292 (359)
Q Consensus       218 ~~~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~-----~~~~~~i~~~~  292 (359)
                      ..++.|+|||+|.||++||+..+.+|++|+++|++++.+.++.+.|.+.+.+..+++..+....     ...+++|..++
T Consensus         9 ~~~~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~~aL~~A~~~I~~sl~rvakKk~~~~~~~~~e~v~~~l~ri~~~t   88 (298)
T KOG2304|consen    9 AEIKNVAIVGAGQMGSGIAQVAATSGLNVWLVDANEDALSRATKAISSSLKRVAKKKKADDPVALEEFVDDTLDRIKTST   88 (298)
T ss_pred             ccccceEEEcccccchhHHHHHHhcCCceEEecCCHHHHHHHHHHHHHHHHHHHhhcccCChhhHHHHHHHHHHHHHHcC
Confidence            5678999999999999999999999999999999999999999999999999888877765443     55678999999


Q ss_pred             Cc-CCCCCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCcHHHHHhhcCCCCcEEeecCC
Q psy9056         293 SY-DPFKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPITKIAAASKRPDKVRNMGRI  359 (359)
Q Consensus       293 ~~-~~l~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~rvig~h~~  359 (359)
                      +. +.++++|+|||++.|+.++|+.+|++|...+++++|++||||++.+++++....+|.||.|+|||
T Consensus        89 nv~~~v~dadliiEAivEn~diK~~lF~~l~~~ak~~~il~tNTSSl~lt~ia~~~~~~srf~GlHFf  156 (298)
T KOG2304|consen   89 NVSDAVSDADLIIEAIVENLDIKRKLFKDLDKIAKSSTILATNTSSLSLTDIASATQRPSRFAGLHFF  156 (298)
T ss_pred             CHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHhhcccceEEeecccceeHHHHHhhccChhhhceeecc
Confidence            98 56899999999999999999999999999999999999999999999999999999999999998

>PRK08788 enoyl-CoA hydratase; Validated

Probab=99.90  E-value=5.9e-23  Score=192.72  Aligned_cols=152  Identities=18%  Similarity=0.133  Sum_probs=126.6

Q ss_pred             CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceec
Q psy9056           1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLV   80 (359)
Q Consensus         1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~   80 (359)
                      |+|+|||++|+++||+||++++  ++|++||+++|++|++|++++|++++|..++++|++||+.++++||+++||||+++
T Consensus       130 G~a~GgG~~LalacD~ria~~~--a~f~~pev~lGl~p~~g~~~~l~~~vG~~~A~ellltG~~l~A~eA~~~GLV~~vv  207 (287)
T PRK08788        130 GDALGGGFEAALSHHTIIAERG--AKMGFPEILFNLFPGMGAYSFLARRVGPKLAEELILSGKLYTAEELHDMGLVDVLV  207 (287)
T ss_pred             CeeehHHHHHHHhCCEEEecCC--CEeeCchhhhCcCCCchHHHHHHHHhhHHHHHHHHHcCCCCCHHHHHHCCCCcEec
Confidence            6899999999999999999988  99999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccccccCCCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHhhCCCCCcH
Q psy9056          81 EPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAP  160 (359)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (359)
                      |+             +++.+.+.+++++++..+..                                            +
T Consensus       208 ~~-------------~el~~~a~~~a~~ia~~~~~--------------------------------------------~  230 (287)
T PRK08788        208 ED-------------GQGEAAVRTFIRKSKRKLNG--------------------------------------------W  230 (287)
T ss_pred             Cc-------------hHHHHHHHHHHHHHhcCccH--------------------------------------------H
Confidence            98             88999999999999976321                                            1


Q ss_pred             HHHHHHHHHhhccChhhHHHHHHHHhhhhhcCh-hhHHHHHhHhhhhhhhhc
Q psy9056         161 LKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTP-QSKGLMGLFRAQTECKKN  211 (359)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~s~-~~~~~~~af~~k~~~~~~  211 (359)
                      ..+++..+.....++++.++.|......++++. ...+-|..|..-.+.+.+
T Consensus       231 ~a~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (287)
T PRK08788        231 RAMLRARRRVNPLSLEELMDITEIWVDAALQLEEKDLRTMERLVRAQNRRVG  282 (287)
T ss_pred             HHHHHHHHhhccCCHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHhhhcc
Confidence            123333444445678888888877776655544 457778888776664443

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=99.89  E-value=3.7e-22  Score=188.32  Aligned_cols=142  Identities=30%  Similarity=0.393  Sum_probs=129.2

Q ss_pred             CCccEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHH-HHhhhcccccccCcC-
Q psy9056         218 TPVKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALD-RDRYLASLVGTLSYD-  295 (359)
Q Consensus       218 ~~~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~i~~~~~~~-  295 (359)
                      |++++|+|||+|.||.++|..++++|++|++||++++.++.+.+.++..++...+.+.++... .....++++++++++ 
T Consensus         1 ~~~~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~   80 (287)
T PRK08293          1 MDIKNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLTTDLAE   80 (287)
T ss_pred             CCccEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEeCCHHH
Confidence            357899999999999999999999999999999999999999888888888888877776655 555667888888984 


Q ss_pred             CCCCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCcHHHHHhhcCCCCcEEeecCC
Q psy9056         296 PFKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPITKIAAASKRPDKVRNMGRI  359 (359)
Q Consensus       296 ~l~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~rvig~h~~  359 (359)
                      .+++||+||+|+|++.++|+.+++++.+++++++||++++|+++++++++.+.+|+|++|+|||
T Consensus        81 a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~sntSt~~~~~~~~~~~~~~r~vg~Hf~  144 (287)
T PRK08293         81 AVKDADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFATNSSTLLPSQFAEATGRPEKFLALHFA  144 (287)
T ss_pred             HhcCCCEEEEeccCCHHHHHHHHHHHHhhCCCCCEEEECcccCCHHHHHhhcCCcccEEEEcCC
Confidence            6899999999999999999999999999999999999999999999999999999999999996

>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=99.88  E-value=3.8e-22  Score=187.75  Aligned_cols=141  Identities=40%  Similarity=0.671  Sum_probs=131.9

Q ss_pred             CccEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcCCCC
Q psy9056         219 PVKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPFK  298 (359)
Q Consensus       219 ~~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~  298 (359)
                      .|++|+|||+|.||.++|..++++|++|++||++++.++.+...++..++...+.+.++.........+++++++++.++
T Consensus         2 ~~~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~   81 (282)
T PRK05808          2 GIQKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTTDLDDLK   81 (282)
T ss_pred             CccEEEEEccCHHHHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHHhc
Confidence            47899999999999999999999999999999999999998888888888888988888777777778888888887799


Q ss_pred             CccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCcHHHHHhhcCCCCcEEeecCC
Q psy9056         299 NADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPITKIAAASKRPDKVRNMGRI  359 (359)
Q Consensus       299 ~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~rvig~h~~  359 (359)
                      +||+||+|+|++..+|+.+++++.++++++++|+|++++++++.+++.+++|.|++++||+
T Consensus        82 ~aDlVi~av~e~~~~k~~~~~~l~~~~~~~~il~s~ts~~~~~~la~~~~~~~r~ig~h~~  142 (282)
T PRK05808         82 DADLVIEAATENMDLKKKIFAQLDEIAKPEAILATNTSSLSITELAAATKRPDKVIGMHFF  142 (282)
T ss_pred             cCCeeeecccccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHHhhCCCcceEEeecc
Confidence            9999999999999999999999999999999999999999999999999999999999996

>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=99.88  E-value=4.8e-22  Score=187.97  Aligned_cols=142  Identities=35%  Similarity=0.559  Sum_probs=131.0

Q ss_pred             CCccEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcCCC
Q psy9056         218 TPVKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPF  297 (359)
Q Consensus       218 ~~~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l  297 (359)
                      +++++|+|||+|.||.+||..++++|++|++||++++.++.+.+.+...+....+.+.++.........+++++++++++
T Consensus         2 ~~~~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~   81 (292)
T PRK07530          2 MAIKKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTATDLEDL   81 (292)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEeeCCHHHh
Confidence            56789999999999999999999999999999999999999888888888888888888777777777888888888889


Q ss_pred             CCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCcHHHHHhhcCCCCcEEeecCC
Q psy9056         298 KNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPITKIAAASKRPDKVRNMGRI  359 (359)
Q Consensus       298 ~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~rvig~h~~  359 (359)
                      ++||+||+|+|++.++|+.+++++.+.++++++|+|+||+++++.+++.+.+|.|++|+|||
T Consensus        82 ~~aD~Vieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~s~la~~~~~~~r~~g~h~~  143 (292)
T PRK07530         82 ADCDLVIEAATEDETVKRKIFAQLCPVLKPEAILATNTSSISITRLASATDRPERFIGIHFM  143 (292)
T ss_pred             cCCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCcccEEEeecc
Confidence            99999999999999999999999999999999999999999999999999889999999996

>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=99.88  E-value=6e-22  Score=187.23  Aligned_cols=142  Identities=35%  Similarity=0.560  Sum_probs=127.2

Q ss_pred             CCccEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHH---hHHHHHhhccCChHHHHhhhcccccccCc
Q psy9056         218 TPVKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKT---GLDGAVKRKKMSALDRDRYLASLVGTLSY  294 (359)
Q Consensus       218 ~~~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~---~l~~~~~~~~~~~~~~~~~~~~i~~~~~~  294 (359)
                      |++++|+|||+|.||.+||..++++|++|++||++++.++.+.+.+++   .++...+.+.++....+...+++.+++++
T Consensus         1 ~~i~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~   80 (291)
T PRK06035          1 MDIKVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTSTSY   80 (291)
T ss_pred             CCCcEEEEECccHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEeeCCH
Confidence            357899999999999999999999999999999999999887776654   35556666777777777777888888888


Q ss_pred             CCCCCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCcHHHHHhhcCCCCcEEeecCC
Q psy9056         295 DPFKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPITKIAAASKRPDKVRNMGRI  359 (359)
Q Consensus       295 ~~l~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~rvig~h~~  359 (359)
                      +.+++||+||+|+|++.++|+.+++++.+++++++||+|++|+++++++++.+..++|++|+|||
T Consensus        81 ~~~~~aDlVieav~e~~~~k~~~~~~l~~~~~~~~il~S~tsg~~~~~la~~~~~~~r~ig~hf~  145 (291)
T PRK06035         81 ESLSDADFIVEAVPEKLDLKRKVFAELERNVSPETIIASNTSGIMIAEIATALERKDRFIGMHWF  145 (291)
T ss_pred             HHhCCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEEcCCCCCHHHHHhhcCCcccEEEEecC
Confidence            77899999999999999999999999999999999999999999999999999999999999997

>PLN02545 3-hydroxybutyryl-CoA dehydrogenase

Probab=99.88  E-value=9.7e-22  Score=186.18  Aligned_cols=142  Identities=35%  Similarity=0.583  Sum_probs=132.2

Q ss_pred             CCccEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcCCC
Q psy9056         218 TPVKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPF  297 (359)
Q Consensus       218 ~~~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l  297 (359)
                      +++++|+|||+|.||.+||..++++|++|++||++++.++...+.+++.++...+.+.++.......++++.++++.+.+
T Consensus         2 ~~~~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~   81 (295)
T PLN02545          2 AEIKKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCTTNLEEL   81 (295)
T ss_pred             CCcCEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEeeCCHHHh
Confidence            35789999999999999999999999999999999999999999999889999988988887777777788888888889


Q ss_pred             CCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCcHHHHHhhcCCCCcEEeecCC
Q psy9056         298 KNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPITKIAAASKRPDKVRNMGRI  359 (359)
Q Consensus       298 ~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~rvig~h~~  359 (359)
                      ++||+||+|+|+++++|..+++++.+++++++||+|++|+++++++++.+..+.+++|+||+
T Consensus        82 ~~aD~Vieav~e~~~~k~~v~~~l~~~~~~~~il~s~tS~i~~~~l~~~~~~~~r~~g~h~~  143 (295)
T PLN02545         82 RDADFIIEAIVESEDLKKKLFSELDRICKPSAILASNTSSISITRLASATQRPQQVIGMHFM  143 (295)
T ss_pred             CCCCEEEEcCccCHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCCcceEEEecc
Confidence            99999999999999999999999999999999999999999999999999999999999996

>KOG1684|consensus

Probab=99.88  E-value=1.1e-22  Score=188.69  Aligned_cols=202  Identities=18%  Similarity=0.159  Sum_probs=162.1

Q ss_pred             CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceec
Q psy9056           1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLV   80 (359)
Q Consensus         1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~   80 (359)
                      |+.||||++|..+--||||+|+  +.|.|||+.||++|++|++++++|+.| +...++.+||+++++.+|+..||.+|+|
T Consensus       144 GITMGgG~GLS~hg~fRVATer--T~~AmPEt~IGlfPDVG~Sy~lsrlpg-~lg~YLgLTG~rl~GaD~~~~GlATHyv  220 (401)
T KOG1684|consen  144 GITMGGGVGLSVHGRFRVATER--TVFAMPETGIGLFPDVGASYFLSRLPG-YLGLYLGLTGQRLSGADALRCGLATHYV  220 (401)
T ss_pred             ceeecCCcceeecceeEEeecc--ceecccccccccccCccceeehhhCcc-HHHHhhhhccceecchHHHHhcchhhcc
Confidence            6899999999999999999998  999999999999999999999999999 8899999999999999999999999999


Q ss_pred             CCCCCCCCCcchhhHHHH----HHHHHHHHHHHhcCccccccCCCCCC---------chhhhhhhhhhhhh--hHHHHHH
Q psy9056          81 EPLGPGLNHPEERTMEYL----EEVAVNTASQLASGKLKINRTKPMIP---------DKVLDVALKFEFVR--NQIFGKA  145 (359)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l----~~~~~~~~~~l~~~~~~~~~~k~~~~---------~~~~~~~~~~~~~~--~~~~~~~  145 (359)
                      |+  +.|+.|+|++.-.+    ...+.+...+..+.+.+.........         ..|.+.+..+.-+.  +..-.|+
T Consensus       221 ~S--~~l~~Lee~L~~~l~~dp~~~I~~~l~~y~~~~~~~~~~~~~~~~~i~~~Fs~~tVeeIie~lk~~q~~~~~~ewa  298 (401)
T KOG1684|consen  221 PS--EKLPSLEERLLKNLNDDPQSVINETLEKYASPAKDESFSLSLKLDVINKCFSANTVEEIIEALKNYQQSADGSEWA  298 (401)
T ss_pred             ch--hhhhHHHHHHhhhcCCCcHHHHHHHHHHhcccCCCccccchhhHHHHHHhhccccHHHHHHHHHHHhhhhhHHHHH
Confidence            98  57888887665112    12333444444433211111000000         22445555443344  7788899


Q ss_pred             HHHHHHhhCCCCCcHHHHHHHHHHhhccChhhHHHHHHHHhhhhhcChhhHHHHHh-Hhhhhh
Q psy9056         146 KEKVMKMSGGLYPAPLKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGL-FRAQTE  207 (359)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~s~~~~~~~~a-f~~k~~  207 (359)
                      .+++.+....++.+...+.+.++.+..+++++++.+|++.......++||.||+++ .++|..
T Consensus       299 k~tlk~L~k~SPtSLkvT~r~i~egs~~tl~~~l~~Eyr~s~~~~~~~DF~EGvRA~LIDKd~  361 (401)
T KOG1684|consen  299 KETLKTLKKMSPTSLKVTLRQIREGSKQTLDQCLTMEYRLSLRMLMRGDFCEGVRAVLIDKDQ  361 (401)
T ss_pred             HHHHHHHhhcCCchHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhccchhhhhhheeecCCc
Confidence            99999999999999999999999999999999999999999999999999999997 556654

>PRK05869 enoyl-CoA hydratase; Validated

Probab=99.87  E-value=4.6e-22  Score=180.67  Aligned_cols=100  Identities=24%  Similarity=0.454  Sum_probs=96.4

Q ss_pred             CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceec
Q psy9056           1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLV   80 (359)
Q Consensus         1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~   80 (359)
                      |.|+|||++|+++|||||++++  ++|++||+++|++|++|++.+|++++|..++++++++|++++++||+++||+|+++
T Consensus       108 G~a~GgG~~lalacD~ria~~~--a~f~~pe~~~Gl~p~~g~~~~l~~~ig~~~a~~l~ltg~~~~a~eA~~~Glv~~vv  185 (222)
T PRK05869        108 GYALGAGLTLALAADWRVSGDN--VKFGATEILAGLAPSGDGMARLTRAAGPSRAKELVFSGRFFDAEEALALGLIDEMV  185 (222)
T ss_pred             CEeecHHHHHHHhCCEEEecCC--CEEcCchhccCCCCCccHHHHHHHHhCHHHHHHHHHcCCCcCHHHHHHCCCCCEee
Confidence            6899999999999999999988  99999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccc
Q psy9056          81 EPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLK  115 (359)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~  115 (359)
                      |+             +++.+.+.++++++++.|+.
T Consensus       186 ~~-------------~~l~~~a~~~a~~ia~~~~~  207 (222)
T PRK05869        186 AP-------------DDVYDAAAAWARRFLDGPPH  207 (222)
T ss_pred             Cc-------------hHHHHHHHHHHHHHHcCCHH
Confidence            98             88999999999999998873

>PRK06213 enoyl-CoA hydratase; Provisional

Probab=99.87  E-value=6.1e-22  Score=180.86  Aligned_cols=129  Identities=22%  Similarity=0.229  Sum_probs=112.8

Q ss_pred             CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceec
Q psy9056           1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLV   80 (359)
Q Consensus         1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~   80 (359)
                      |.|+|||++|+++||||||+++ +++|++||+++|++|+++++.++++++|...+++|+++|++++++||+++||||+++
T Consensus       100 G~a~GgG~~lal~~D~rva~~~-~a~f~~pe~~~Gl~~~~~~~~~l~~~~g~~~a~~lll~g~~~~a~eA~~~Glv~~vv  178 (229)
T PRK06213        100 GHAIAKGAFLLLSADYRIGVHG-PFKIGLNEVAIGMTMPHAAIELARDRLTPSAFQRAVINAEMFDPEEAVAAGFLDEVV  178 (229)
T ss_pred             CeeeHHHHHHHHhCCeeeEecC-CcEEECchhhhCCcCChHHHHHHHHHcCHHHHHHHHHcCcccCHHHHHHCCCceecc
Confidence            6899999999999999999975 489999999999998888888999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccccccCCCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHhhCCCCCcH
Q psy9056          81 EPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAP  160 (359)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (359)
                      |+             +++.+.+.+++++++..++..                                           .
T Consensus       179 ~~-------------~~l~~~a~~~a~~la~~~~~a-------------------------------------------~  202 (229)
T PRK06213        179 PP-------------EQLLARAQAAARELAGLNMGA-------------------------------------------H  202 (229)
T ss_pred             Ch-------------HHHHHHHHHHHHHHhcCCHHH-------------------------------------------H
Confidence            98             889999999999999887632                                           2


Q ss_pred             HHHHHHHHHhhccChhhHHHHHHHHh
Q psy9056         161 LKILDVVRTGIEKGPSAGYEAEAEGF  186 (359)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~e~~~~  186 (359)
                      ..+|+.++......++++++.|.+.+
T Consensus       203 ~~~K~~l~~~~~~~l~~~~~~~~~~~  228 (229)
T PRK06213        203 AATKLKVRAAALEAIRAAIEGDAAEF  228 (229)
T ss_pred             HHHHHHHHHHHHHHHHhchhhhhhhc
Confidence            34566666666667777777777654

>PRK08290 enoyl-CoA hydratase; Provisional

Probab=99.87  E-value=9e-22  Score=185.48  Aligned_cols=134  Identities=19%  Similarity=0.192  Sum_probs=116.6

Q ss_pred             CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceec
Q psy9056           1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLV   80 (359)
Q Consensus         1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~   80 (359)
                      |.|+|||++|+++|||||++++  ++|++||+++|+ |+ .+++++++++|..++++|++||++++++||+++||||++|
T Consensus       127 G~a~GgG~~lalacD~ria~e~--a~f~~pe~~lGl-~~-~~~~~l~~~iG~~~A~~llltG~~i~A~eA~~~GLV~~vv  202 (288)
T PRK08290        127 GACIAGGLMLAWVCDLIVASDD--AFFSDPVVRMGI-PG-VEYFAHPWELGPRKAKELLFTGDRLTADEAHRLGMVNRVV  202 (288)
T ss_pred             CEeeHHHHHHHHhCCEEEeeCC--CEecCcccccCc-Cc-chHHHHHHHhhHHHHHHHHHcCCCCCHHHHHHCCCccEee
Confidence            6899999999999999999998  999999999999 44 4567789999999999999999999999999999999999


Q ss_pred             CCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccccccCCCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHhhCCCCCcH
Q psy9056          81 EPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAP  160 (359)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (359)
                      |+             +++++.+.+++++++..|+...                                           
T Consensus       203 ~~-------------~~l~~~a~~~a~~la~~~~~a~-------------------------------------------  226 (288)
T PRK08290        203 PR-------------DELEAETLELARRIAAMPPFGL-------------------------------------------  226 (288)
T ss_pred             CH-------------HHHHHHHHHHHHHHHhCCHHHH-------------------------------------------
Confidence            98             8899999999999999887322                                           


Q ss_pred             HHHHHHHHHhhcc-ChhhHHHHHHHHhhhhh-cChh
Q psy9056         161 LKILDVVRTGIEK-GPSAGYEAEAEGFSQLA-MTPQ  194 (359)
Q Consensus       161 ~~~~~~~~~~~~~-~~~~~~~~e~~~~~~~~-~s~~  194 (359)
                      ..+|+.++..... ++++++..|.+.....+ ++++
T Consensus       227 ~~~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (288)
T PRK08290        227 RLTKRAVNQTLDAQGFRAALDAVFDLHQLGHAHNAE  262 (288)
T ss_pred             HHHHHHHHHHHhhccHHHHHHHHHHHHHHccccchh
Confidence            2455666665554 68999999999988877 6765

>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=99.86  E-value=5.5e-21  Score=180.43  Aligned_cols=140  Identities=35%  Similarity=0.512  Sum_probs=128.7

Q ss_pred             ccEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CCCC
Q psy9056         220 VKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DPFK  298 (359)
Q Consensus       220 ~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~l~  298 (359)
                      +++|+|||+|.||.+||..++++|++|++||++++.++.+.+.+...++...+.+.++.........++++++++ +.++
T Consensus         1 ~~~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~   80 (288)
T PRK09260          1 IEKLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYSLDLKAAVA   80 (288)
T ss_pred             CcEEEEECccHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCcHHHhhc
Confidence            578999999999999999999999999999999999999888887777777777888877777777888888888 5789


Q ss_pred             CccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCcHHHHHhhcCCCCcEEeecCC
Q psy9056         299 NADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPITKIAAASKRPDKVRNMGRI  359 (359)
Q Consensus       299 ~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~rvig~h~~  359 (359)
                      +||+||+|+|++.++|+.++.++.+++++++||++++|+++++++++.+..+.|++|+|||
T Consensus        81 ~aD~Vi~avpe~~~~k~~~~~~l~~~~~~~~il~~~tSt~~~~~l~~~~~~~~r~~g~h~~  141 (288)
T PRK09260         81 DADLVIEAVPEKLELKKAVFETADAHAPAECYIATNTSTMSPTEIASFTKRPERVIAMHFF  141 (288)
T ss_pred             CCCEEEEeccCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCcccEEEEecC
Confidence            9999999999999999999999999999999999999999999999999999999999996

>TIGR03200 dearomat_oah 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase

Probab=99.86  E-value=2.9e-21  Score=183.54  Aligned_cols=181  Identities=14%  Similarity=0.083  Sum_probs=126.5

Q ss_pred             CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceec
Q psy9056           1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLV   80 (359)
Q Consensus         1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~   80 (359)
                      |.|+|||++|+++||+||++++  ++|++||+++|++|++|++++|++++|..+|++|+++|++++|+||+++|||++++
T Consensus       133 G~AiGGGleLALaCDlrIAse~--A~Fg~PE~rlGl~P~~Ggt~rLprlvG~~rA~~llltGe~~sA~EA~~~GLVd~VV  210 (360)
T TIGR03200       133 GMRIGGGQEIGMAADFTIAQDL--ANFGQAGPKHGSAPIGGATDFLPLMIGCEQAMVSGTLCEPWSAHKAKRLGIIMDVV  210 (360)
T ss_pred             CEeeeHHHHHHHhCCEEEEcCC--CEEeCchhccCCCCCccHHHHHHHhhCHHHHHHHHHhCCcCcHHHHHHcCChheec
Confidence            6799999999999999999998  99999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCcchhhHHHH------------HHHHHHHHHHHhcCccc--ccc-CCCCCCchhhhhhhhhhhh-hhHHHHH
Q psy9056          81 EPLGPGLNHPEERTMEYL------------EEVAVNTASQLASGKLK--INR-TKPMIPDKVLDVALKFEFV-RNQIFGK  144 (359)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l------------~~~~~~~~~~l~~~~~~--~~~-~k~~~~~~~~~~~~~~~~~-~~~~~~~  144 (359)
                      |+             +++            ++.+.++.+.+...++.  ..+ .|.++         ..... ....-..
T Consensus       211 p~-------------~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~k~~~---------~~~~~~~~~l~~~  268 (360)
T TIGR03200       211 PA-------------LKVDGKFVANPLVVTDRYLDEFGRIVHGEFKAGDELKAGKELI---------KQGTIDLSLLDEA  268 (360)
T ss_pred             Cc-------------hhcCcchhcCcccchHHHHHHHhHHhcCCCcchhHHHHHHHHH---------hcccchHhHHHHH
Confidence            98             455            56666777777666553  111 22211         00001 1111122


Q ss_pred             HHHHHHHhhCCCCCcHHHHHHHHHHhhccChhhHHHHHHHHhhhhhcChhhHHHHHhHhhhh
Q psy9056         145 AKEKVMKMSGGLYPAPLKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQT  206 (359)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~s~~~~~~~~af~~k~  206 (359)
                      ..+..++.....+-..-++++.++......+...-......+.--+. -+.++|+++|-++.
T Consensus       269 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  329 (360)
T TIGR03200       269 VEALCAKLLNTFPECLTKSIEELRKPKLFAWNQNKENSRAWLALNMM-NEARTGFRAFNEGK  329 (360)
T ss_pred             HHHHHHHHHHhchHHHHHHHHHhhhHHHHHHHhhhhhhHHHHHhhcc-cccchhhHHHhccc
Confidence            12222233332333334555666655555454444444444544444 88999999999953

Members of this protein family are 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase, a ring-hydrolyzing enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.

>PRK08272 enoyl-CoA hydratase; Provisional

Probab=99.83  E-value=2.6e-20  Score=176.87  Aligned_cols=97  Identities=19%  Similarity=0.275  Sum_probs=89.6

Q ss_pred             CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceec
Q psy9056           1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLV   80 (359)
Q Consensus         1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~   80 (359)
                      |+|+|||++|+++||+|||+++  ++|++||+++|.+|+.   ..+++++|.++|++|++||++++++||+++||||+++
T Consensus       136 G~a~GgG~~lalacD~~ias~~--a~f~~pe~~~gg~~~~---~~~~~~vG~~~A~~llltG~~i~a~eA~~~GLv~~vv  210 (302)
T PRK08272        136 GYCVAGGTDIALHCDQVIAADD--AKIGYPPTRVWGVPAT---GMWAYRLGPQRAKRLLFTGDCITGAQAAEWGLAVEAV  210 (302)
T ss_pred             cEeehhhHHHHHhCCEEEEeCC--CEecCcchhcccCChH---HHHHHHhhHHHHHHHHHcCCccCHHHHHHcCCCceec
Confidence            6899999999999999999998  9999999998666653   3578899999999999999999999999999999999


Q ss_pred             CCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccc
Q psy9056          81 EPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLK  115 (359)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~  115 (359)
                      |+             +++++.+.+++++|+..|+.
T Consensus       211 ~~-------------~~l~~~a~~la~~ia~~~~~  232 (302)
T PRK08272        211 PP-------------EELDERTERLVERIAAVPVN  232 (302)
T ss_pred             CH-------------HHHHHHHHHHHHHHHcCCHH
Confidence            98             89999999999999998874

>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=99.82  E-value=2.9e-19  Score=170.25  Aligned_cols=141  Identities=26%  Similarity=0.341  Sum_probs=128.5

Q ss_pred             CccEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CCC
Q psy9056         219 PVKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DPF  297 (359)
Q Consensus       219 ~~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~l  297 (359)
                      +|++|+|||+|.||++||..++++|++|++||++++.++.+...++..++...+.+.++........+++.+++++ +.+
T Consensus         1 ~~~~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~~~~~~~a~   80 (308)
T PRK06129          1 PMGSVAIIGAGLIGRAWAIVFARAGHEVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRVTDSLADAV   80 (308)
T ss_pred             CCcEEEEECccHHHHHHHHHHHHCCCeeEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEEECcHHHhh
Confidence            3578999999999999999999999999999999999999888888888888888887777777777888888888 468


Q ss_pred             CCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCcHHHHHhhcCCCCcEEeecCC
Q psy9056         298 KNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPITKIAAASKRPDKVRNMGRI  359 (359)
Q Consensus       298 ~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~rvig~h~~  359 (359)
                      ++||+||+|+|++.++++.+++++.+.++++++|.|++++++++++++.+..+.++++.||+
T Consensus        81 ~~ad~Vi~avpe~~~~k~~~~~~l~~~~~~~~ii~ssts~~~~~~la~~~~~~~~~~~~hp~  142 (308)
T PRK06129         81 ADADYVQESAPENLELKRALFAELDALAPPHAILASSTSALLASAFTEHLAGRERCLVAHPI  142 (308)
T ss_pred             CCCCEEEECCcCCHHHHHHHHHHHHHhCCCcceEEEeCCCCCHHHHHHhcCCcccEEEEecC
Confidence            99999999999999999999999999889999999999999999999999999999999996

>PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=99.81  E-value=3.4e-19  Score=169.71  Aligned_cols=129  Identities=24%  Similarity=0.296  Sum_probs=120.1

Q ss_pred             chHHHHHHHHHCCCeeEEecCCHH-------HHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccC--c-CCCCCc
Q psy9056         231 MGAGIAHVTVDKGYNTIVKDSFEK-------GLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLS--Y-DPFKNA  300 (359)
Q Consensus       231 mG~~iA~~l~~~G~~V~l~d~~~~-------~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~--~-~~l~~a  300 (359)
                      ||.+||..++.+|++|++||++++       .++.+.+.+...++...+.|.+++......+++++++++  . +++++|
T Consensus         1 MG~giA~~~a~~G~~V~l~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~a~~~a   80 (314)
T PRK08269          1 MGQGIALAFAFAGHDVTLIDFKPRDAAGWRALDAEARAEIERTLAALVALGRIDAAQADAVLARIAVVARDGAADALADA   80 (314)
T ss_pred             CcHHHHHHHHhCCCeEEEEeCCcccchhhHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEeecCcchHHHhccC
Confidence            899999999999999999999995       466788889999999999999999888888999998765  3 568999


Q ss_pred             cEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCcHHHHHhhcCCCCcEEeecCC
Q psy9056         301 DMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPITKIAAASKRPDKVRNMGRI  359 (359)
Q Consensus       301 D~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~rvig~h~~  359 (359)
                      |+||||+||+.++|+.+|.++.+.+++++||+||||+++++++++.+.+|+|++|+|||
T Consensus        81 D~ViEav~E~~~~K~~~f~~l~~~~~~~~ilaSntS~~~~~~la~~~~~p~r~~g~Hf~  139 (314)
T PRK08269         81 DLVFEAVPEVLDAKREALRWLGRHVDADAIIASTTSTFLVTDLQRHVAHPERFLNAHWL  139 (314)
T ss_pred             CEEEECCcCCHHHHHHHHHHHHhhCCCCcEEEEccccCCHHHHHhhcCCcccEEEEecC
Confidence            99999999999999999999999999999999999999999999999999999999997

>PLN02267 enoyl-CoA hydratase/isomerase family protein

Probab=99.81  E-value=1.1e-19  Score=166.99  Aligned_cols=101  Identities=30%  Similarity=0.273  Sum_probs=90.2

Q ss_pred             CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHH-HHHHhcCCCCCHHHHHHcCCccee
Q psy9056           1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNV-LDMTLTGKTLKADKAKKMGIVDQL   79 (359)
Q Consensus         1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a-~~~~ltg~~~~a~eA~~~Glv~~~   79 (359)
                      |.|+|||++|+++||+|||+++ +++|++||+++|++++.+++.++++++|..++ ++|+++|++++++||+++||||++
T Consensus       103 G~a~GgG~~lalacD~ria~~~-~a~f~~pe~~~Gl~~p~~~~~~l~~~vG~~~a~~~llltG~~~~a~eA~~~Glv~~v  181 (239)
T PLN02267        103 GHASAAGFILALSHDYVLMRKD-RGVLYMSEVDIGLPLPDYFMALLRAKIGSPAARRDVLLRAAKLTAEEAVEMGIVDSA  181 (239)
T ss_pred             CcchHHHHHHHHHCCEEEecCC-CCeEeccccccCCCCChHHHHHHHHHcChHHHHHHHHHcCCcCCHHHHHHCCCccee
Confidence            6899999999999999999853 27999999999997444558899999999999 699999999999999999999999


Q ss_pred             cCCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCcc
Q psy9056          80 VEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKL  114 (359)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~  114 (359)
                      +|+.            +++.+.+.++++++++.++
T Consensus       182 v~~~------------~~l~~~a~~~A~~ia~~~~  204 (239)
T PLN02267        182 HDSA------------EETVEAAVRLGEELAARKW  204 (239)
T ss_pred             cCCH------------HHHHHHHHHHHHHHhhccC
Confidence            9852            6799999999999998755

>COG0447 MenB Dihydroxynaphthoic acid synthase [Coenzyme metabolism]

Probab=99.80  E-value=3.1e-20  Score=161.35  Aligned_cols=156  Identities=16%  Similarity=0.183  Sum_probs=127.9

Q ss_pred             CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceec
Q psy9056           1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLV   80 (359)
Q Consensus         1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~   80 (359)
                      |||+|||-.|-+.||+.||+++  ++|+....++|-+-++.++..|.|++|..+|+|+.+.++.|+|+||++||+||.+|
T Consensus       125 G~AiGGGhvlhvvCDLTiAa~n--A~FgQTgp~VGSFD~G~Gs~ylar~VGqKkArEIwfLcR~Y~A~eal~MGlVN~Vv  202 (282)
T COG0447         125 GYAIGGGHVLHVVCDLTIAADN--AIFGQTGPKVGSFDGGYGSSYLARIVGQKKAREIWFLCRQYDAEEALDMGLVNTVV  202 (282)
T ss_pred             eEeccCccEEEEEeeeeeehhc--chhcCCCCCcccccCcccHHHHHHHhhhhhhHHhhhhhhhccHHHHHhcCceeeec
Confidence            6899999999999999999999  99999999999998888899999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccccccCCCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHhhCCCCCcH
Q psy9056          81 EPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAP  160 (359)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (359)
                      |-             ++|++++.+|++++.+.+|...+.                                         
T Consensus       203 p~-------------~~LE~e~v~W~~E~l~kSP~AlR~-----------------------------------------  228 (282)
T COG0447         203 PH-------------ADLEKETVQWAREMLAKSPTALRM-----------------------------------------  228 (282)
T ss_pred             cH-------------HHHHHHHHHHHHHHHhcChHHHHH-----------------------------------------
Confidence            98             999999999999999988744331                                         


Q ss_pred             HHHHHHHHHhhccChhhHHHHHHHHhhhhhcChhhHHHHHhHhhhhhhhhcCCCC
Q psy9056         161 LKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQTECKKNRLGK  215 (359)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~s~~~~~~~~af~~k~~~~~~~~~~  215 (359)
                         ++.--++...++.-..+..-+...-.+.+++.+||..+|.+||+|.|++++.
T Consensus       229 ---LK~Afnad~DGlaG~q~~ag~at~L~YmTdEa~EGr~AF~eKR~Pdf~~fp~  280 (282)
T COG0447         229 ---LKAAFNADCDGLAGLQELAGNATLLYYMTDEAQEGRDAFLEKRKPDFSKFPR  280 (282)
T ss_pred             ---HHHHhcCCCchhhHHHHhcccceEEEEechhhhhhHHHHhhccCCChHhcCC
Confidence               1111111122222222222333445568999999999999999999987653

>KOG0016|consensus

Probab=99.80  E-value=3e-19  Score=159.72  Aligned_cols=149  Identities=18%  Similarity=0.217  Sum_probs=137.6

Q ss_pred             CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceec
Q psy9056           1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLV   80 (359)
Q Consensus         1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~   80 (359)
                      |=|+|-|+.+.--||+++|+|.  ++|-+|++.+|..|.+|+++.+|.++|...|.||++.|++++|+||++.|||++++
T Consensus       116 GPAIGlgasil~lcD~V~A~Dk--a~F~TPfa~lGq~PEG~Ss~t~p~imG~~~A~E~ll~~~kltA~Ea~~~glVskif  193 (266)
T KOG0016|consen  116 GPAIGLGASILPLCDYVWASDK--AWFQTPFAKLGQSPEGCSSVTLPKIMGSASANEMLLFGEKLTAQEACEKGLVSKIF  193 (266)
T ss_pred             CCccchhhHHhhhhheEEeccc--eEEeccchhcCCCCCcceeeeehHhhchhhHHHHHHhCCcccHHHHHhcCchhhhc
Confidence            4489999999999999999987  99999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccccccCCCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHhhCCCCCcH
Q psy9056          81 EPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAP  160 (359)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (359)
                      +.             +.+.+.+...++++++.++.                                           +.
T Consensus       194 ~~-------------~tf~~~v~~~ikq~s~l~p~-------------------------------------------sl  217 (266)
T KOG0016|consen  194 PA-------------ETFNEEVLKKIKQYSKLSPE-------------------------------------------SL  217 (266)
T ss_pred             Ch-------------HHHHHHHHHHHHHHhcCCHH-------------------------------------------HH
Confidence            98             89999999999999997763                                           23


Q ss_pred             HHHHHHHHHhhccChhhHHHHHHHHhhhhhcChhhHHHHHhHhhhhh
Q psy9056         161 LKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQTE  207 (359)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~s~~~~~~~~af~~k~~  207 (359)
                      ...|+++|.+....+..+.+.|++.....|.|+|..+.+..|+.+..
T Consensus       218 ~~~K~L~rs~~k~~l~~an~~E~~~l~~~W~s~e~~~~~~~~~~~~~  264 (266)
T KOG0016|consen  218 LGMKKLLRSNIKEELIKANEEECNVLLKQWVSAECLARFKQYLSKKR  264 (266)
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHhhccChHHHHHHHHHhcccc
Confidence            35667788888889999999999999999999999999999988754

>KOG1681|consensus

Probab=99.78  E-value=3.6e-19  Score=155.83  Aligned_cols=151  Identities=18%  Similarity=0.159  Sum_probs=134.2

Q ss_pred             CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcC-hHHHHHHHhcCCCCCHHHHHHcCCccee
Q psy9056           1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTA-LPNVLDMTLTGKTLKADKAKKMGIVDQL   79 (359)
Q Consensus         1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g-~~~a~~~~ltg~~~~a~eA~~~Glv~~~   79 (359)
                      |.|+|||+.|..|||+|+++++  +.|+.-|+.+|+.-+.|...+||..+| ...++++.+|++.|+|+||++.|||+++
T Consensus       135 g~CiGagvDLiTAcDIRycsqD--AffsvkEVDvglaADvGTL~RlpkvVGn~s~~~elafTar~f~a~EAl~~GLvSrv  212 (292)
T KOG1681|consen  135 GACIGAGVDLITACDIRYCSQD--AFFSVKEVDVGLAADVGTLNRLPKVVGNQSLARELAFTARKFSADEALDSGLVSRV  212 (292)
T ss_pred             hhhccccccceeecceeeeccc--ceeeeeeeeeehhhchhhHhhhhHHhcchHHHHHHHhhhhhcchhhhhhcCcchhh
Confidence            5789999999999999999999  999999999999999999999999999 6899999999999999999999999999


Q ss_pred             cCCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCcc-ccccCCCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHhhCCCCC
Q psy9056          80 VEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKL-KINRTKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYP  158 (359)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~-~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (359)
                      +|+.            ++++..+..+|..|+..+| .+..                                        
T Consensus       213 f~dk------------~~ll~~~l~mA~~Ia~KSpvaVqg----------------------------------------  240 (292)
T KOG1681|consen  213 FPDK------------EELLNGALPMAELIASKSPVAVQG----------------------------------------  240 (292)
T ss_pred             cCCH------------HHHHhhhHHHHHHhccCCceeeec----------------------------------------
Confidence            9985            8999999999999999877 3322                                        


Q ss_pred             cHHHHHHHHHHhhccChhhHHHHHHHHhhhhhcChhhHHHHHhHhhhhhhh
Q psy9056         159 APLKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQTECK  209 (359)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~s~~~~~~~~af~~k~~~~  209 (359)
                          +++.+..+++.+.++.+..=.-.....+.|+|..+++.+-.+|+++.
T Consensus       241 ----TK~~L~ysrehsv~~sLnyvatwNms~L~s~Dl~~av~a~m~k~k~~  287 (292)
T KOG1681|consen  241 ----TKENLLYSREHSVEESLNYVATWNMSMLLSDDLVKAVMAQMEKLKTV  287 (292)
T ss_pred             ----hHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Confidence                34555777788888888888777778888999999999888877543

>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase

Probab=99.77  E-value=1.2e-18  Score=175.76  Aligned_cols=107  Identities=26%  Similarity=0.415  Sum_probs=97.8

Q ss_pred             CCCCchHHHHHHhcCEEEEecCCceEEeccccC-CCCCCCcchHhHHh--hhcChHHHHHHHhcCCCCCHHHHHHcCCcc
Q psy9056           1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVM-LGLLPGAGGTQRLP--KLTALPNVLDMTLTGKTLKADKAKKMGIVD   77 (359)
Q Consensus         1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~-~Gi~p~~g~~~~l~--~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~   77 (359)
                      |+|+|||++|+++||+||++++.+++|++||++ +|++|++|++.+++  +.+|..+|++|++||++++++||+++||||
T Consensus       128 G~a~GGG~~LALacD~rvAs~~a~a~f~~pEv~~lGl~P~~gg~~~l~~~~~vg~~~A~~llltG~~i~A~eA~~~GLV~  207 (546)
T TIGR03222       128 GTCAGGGYELALACDEIMLVDDRSSSVSLPEVPLLGVLPGTGGLTRVTDKRRVRRDHADIFCTIEEGVRGKRAKEWRLVD  207 (546)
T ss_pred             CEeehHHHHHHHhCCEEEEecCCCcEEEccchhccCcCCccchhhhccccchhCHHHHHHHHHcCCCccHHHHHHcCCce
Confidence            689999999999999999998533799999997 99999999999997  689999999999999999999999999999


Q ss_pred             eecCCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccccccCC
Q psy9056          78 QLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTK  120 (359)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~k  120 (359)
                      +++|+             +++.+.+.+++.+|++.|+.+...|
T Consensus       208 ~vv~~-------------~~l~~~a~~lA~~la~~~p~~~~~~  237 (546)
T TIGR03222       208 EVVKP-------------SQFDAAIAERAAELAAQSDRPADAK  237 (546)
T ss_pred             EEeCh-------------HHHHHHHHHHHHHHHhCCCCCcCCC
Confidence            99998             8899999999999999888544433

In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.

>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional

Probab=99.76  E-value=2.7e-18  Score=173.86  Aligned_cols=105  Identities=25%  Similarity=0.383  Sum_probs=97.2

Q ss_pred             CCCCchHHHHHHhcCEEEEecCCceEEeccccC-CCCCCCcchHhHHh--hhcChHHHHHHHhcCCCCCHHHHHHcCCcc
Q psy9056           1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVM-LGLLPGAGGTQRLP--KLTALPNVLDMTLTGKTLKADKAKKMGIVD   77 (359)
Q Consensus         1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~-~Gi~p~~g~~~~l~--~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~   77 (359)
                      |.|+|||++|+++|||||++++.+++|++||++ +|++|++|++++++  +.+|..++++|++||++++++||+++||||
T Consensus       132 G~a~GGG~~LALacD~rIas~~~~a~fg~pEv~~~Gl~P~~gg~~rl~~~~~vg~~~A~~llltG~~i~AeeA~~~GLVd  211 (550)
T PRK08184        132 GTCAGGGYELALACDEIVLVDDRSSAVSLPEVPLLGVLPGTGGLTRVTDKRKVRRDLADIFCTIEEGVRGKRAVDWRLVD  211 (550)
T ss_pred             CEeehHHHHHHHhCCEEEEecCCCcEEEccchhccccCCCcchHHHhhhhhhcCHHHHHHHHHhCCcccHHHHHHcCCcc
Confidence            679999999999999999997655899999997 99999999999998  779999999999999999999999999999


Q ss_pred             eecCCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCcccccc
Q psy9056          78 QLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINR  118 (359)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~  118 (359)
                      +++|+             +++.+.+.+++.+|+..++....
T Consensus       212 ~vv~~-------------d~l~~~a~~~A~~ia~~~~~~~~  239 (550)
T PRK08184        212 EVVKP-------------SKFDAKVAERAAELAAASDRPAD  239 (550)
T ss_pred             EeeCH-------------HHHHHHHHHHHHHHHhCCCCCCC
Confidence            99998             89999999999999999885443

>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated

Probab=99.75  E-value=1.8e-17  Score=167.41  Aligned_cols=137  Identities=18%  Similarity=0.222  Sum_probs=110.4

Q ss_pred             CccEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CCC
Q psy9056         219 PVKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DPF  297 (359)
Q Consensus       219 ~~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~l  297 (359)
                      .+++|+|||+|.||++||..|+++|++|++||++++.++.....+........   .+... .....+++++++++ +.+
T Consensus         3 ~i~kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~~~~~~~~~~~~~~~~~~~---~l~~~-~~~~~g~i~~~~~~~ea~   78 (495)
T PRK07531          3 MIMKAACIGGGVIGGGWAARFLLAGIDVAVFDPHPEAERIIGEVLANAERAYA---MLTDA-PLPPEGRLTFCASLAEAV   78 (495)
T ss_pred             CcCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHh---hhccc-hhhhhhceEeeCCHHHHh
Confidence            35799999999999999999999999999999999988765443322221111   01100 01112356777888 578


Q ss_pred             CCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCcHHHHHhhcCCCCcEEeecCC
Q psy9056         298 KNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPITKIAAASKRPDKVRNMGRI  359 (359)
Q Consensus       298 ~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~rvig~h~~  359 (359)
                      ++||+||+|+|++.++|+.+|.++.+++++++||.|+||+++++.+++.+..+.++++.|||
T Consensus        79 ~~aD~Vieavpe~~~vk~~l~~~l~~~~~~~~iI~SsTsgi~~s~l~~~~~~~~r~~~~hP~  140 (495)
T PRK07531         79 AGADWIQESVPERLDLKRRVLAEIDAAARPDALIGSSTSGFLPSDLQEGMTHPERLFVAHPY  140 (495)
T ss_pred             cCCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCcceEEEEecC
Confidence            99999999999999999999999999999999999999999999999999999999999986

>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=99.75  E-value=2.3e-17  Score=157.35  Aligned_cols=136  Identities=32%  Similarity=0.487  Sum_probs=111.2

Q ss_pred             CccEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcC-CC
Q psy9056         219 PVKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYD-PF  297 (359)
Q Consensus       219 ~~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~l  297 (359)
                      ++++|+|||+|.||.+||..++++|++|++||++++.++.+.+.+........+.+.     ......+++++++.+ .+
T Consensus         3 ~~~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~i~~~~~~~~~~   77 (311)
T PRK06130          3 PIQNLAIIGAGTMGSGIAALFARKGLQVVLIDVMEGALERARGVIERALGVYAPLGI-----ASAGMGRIRMEAGLAAAV   77 (311)
T ss_pred             CccEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHhhhccc-----HHHHhhceEEeCCHHHHh
Confidence            578999999999999999999999999999999999988877654432221111110     012234566677774 58


Q ss_pred             CCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCcHHHHHhhcCCCCcEEeecCC
Q psy9056         298 KNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPITKIAAASKRPDKVRNMGRI  359 (359)
Q Consensus       298 ~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~rvig~h~~  359 (359)
                      ++||+||+|+|++.+.+..++.++.+.++++++|+|++++++++++++.+..+.+++++||+
T Consensus        78 ~~aDlVi~av~~~~~~~~~v~~~l~~~~~~~~ii~s~tsg~~~~~l~~~~~~~~~~ig~h~~  139 (311)
T PRK06130         78 SGADLVIEAVPEKLELKRDVFARLDGLCDPDTIFATNTSGLPITAIAQAVTRPERFVGTHFF  139 (311)
T ss_pred             ccCCEEEEeccCcHHHHHHHHHHHHHhCCCCcEEEECCCCCCHHHHHhhcCCcccEEEEccC
Confidence            99999999999999999999999999999999999999999999999999888999999996

>KOG1682|consensus

Probab=99.74  E-value=3.2e-18  Score=147.48  Aligned_cols=151  Identities=14%  Similarity=0.191  Sum_probs=126.1

Q ss_pred             CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceec
Q psy9056           1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLV   80 (359)
Q Consensus         1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~   80 (359)
                      |+|..+||.|...||+++++++  ++|..|.+.+|++.+.-|. .|.|.++...+++|++||.+++++||+..||++++|
T Consensus       134 G~AaAAGcQLVaSCD~vVa~k~--SkF~tPG~~vGlFCSTPGv-AlaRavpRkva~~ML~Tg~Pi~~eeAl~sGlvskvV  210 (287)
T KOG1682|consen  134 GYAAAAGCQLVASCDMVVATKN--SKFSTPGAGVGLFCSTPGV-ALARAVPRKVAAYMLMTGLPITGEEALISGLVSKVV  210 (287)
T ss_pred             chhhhccceEEEeeeEEEEecC--ccccCCCCceeeEecCcch-hHhhhcchhHHHHHHHhCCCCchHHHHHhhhhhhcC
Confidence            6789999999999999999988  9999999999998776655 488999999999999999999999999999999999


Q ss_pred             CCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccccccCCCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHhhCCCCCcH
Q psy9056          81 EPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAP  160 (359)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (359)
                      |+             ++|+.++.++.++|-..+..+..                         .-               
T Consensus       211 p~-------------~el~~e~~~i~~~i~~~srav~s-------------------------lg---------------  237 (287)
T KOG1682|consen  211 PA-------------EELDKEIEEITNAIKAKSRAVIS-------------------------LG---------------  237 (287)
T ss_pred             CH-------------HHHHHHHHHHHHHHhhhHHHHHH-------------------------HH---------------
Confidence            99             99999999999998776653221                         11               


Q ss_pred             HHHHHHHHHhhccChhhHHHHHHHHhhhhhcChhhHHHHHhHhhhhhhhh
Q psy9056         161 LKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQTECKK  210 (359)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~s~~~~~~~~af~~k~~~~~  210 (359)
                         ++.......++-.+++....+.+-+-++=.|.+|||.+|++||.|.|
T Consensus       238 ---k~f~y~q~~ms~~ea~~~~~~~m~~n~ql~d~kegiasf~~krp~~~  284 (287)
T KOG1682|consen  238 ---KEFYYKQLAMSQAEAFSAAQEKMCENFQLGDTKEGIASFFEKRPPNW  284 (287)
T ss_pred             ---HHHHHHHHHHhHHHHHHHHHHHHhhcccccchHHHHHHHhccCCCCc
Confidence               11122233345557777777788888899999999999999999876

>cd06558 crotonase-like Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily

Probab=99.74  E-value=7.9e-18  Score=149.59  Aligned_cols=94  Identities=43%  Similarity=0.668  Sum_probs=89.6

Q ss_pred             CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceec
Q psy9056           1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLV   80 (359)
Q Consensus         1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~   80 (359)
                      |.|.|+|++++++|||||++++  ++|++||+++|++|+.|++.+|++++|...+.+++++|+.++++||+++||+++++
T Consensus       102 G~a~g~G~~la~~~D~~i~~~~--~~~~~pe~~~G~~p~~g~~~~l~~~~g~~~a~~~~l~g~~~~a~ea~~~Glv~~~~  179 (195)
T cd06558         102 GAALGGGLELALACDIRIAAED--AKFGLPEVKLGLVPGGGGTQRLPRLVGPARARELLLTGRRISAEEALELGLVDEVV  179 (195)
T ss_pred             CeeecHHHHHHHhCCEEEecCC--CEEechhhhcCCCCCCcHHHHHHHHhCHHHHHHHHHcCCccCHHHHHHcCCCCeec
Confidence            6789999999999999999998  99999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCcchhhHHHHHHHHHHHHHHH
Q psy9056          81 EPLGPGLNHPEERTMEYLEEVAVNTASQL  109 (359)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l  109 (359)
                      ++             +++.+.+.++++++
T Consensus       180 ~~-------------~~l~~~a~~~a~~~  195 (195)
T cd06558         180 PD-------------EELLAAALELARRL  195 (195)
T ss_pred             Ch-------------hHHHHHHHHHHhhC
Confidence            98             88999888888763

This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. Many of these play important roles in fatty acid metabolism. In addition to a conserved structural core and the formation of trimers (or dimers of trimers), a common feature in this superfamily is the stabilization of an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two conserved backbone NH groups in active sites that form an oxyanion hole.

>KOG2305|consensus

Probab=99.69  E-value=4.3e-17  Score=143.34  Aligned_cols=141  Identities=26%  Similarity=0.382  Sum_probs=124.5

Q ss_pred             CCccEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCCh-HHHHhhhcccccccCc-C
Q psy9056         218 TPVKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSA-LDRDRYLASLVGTLSY-D  295 (359)
Q Consensus       218 ~~~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~i~~~~~~-~  295 (359)
                      |.+.||+|+|.|.+|+++|..|+..||+|.+||+.++.+.-+...++..+...-+.|.+.. ..+++.+..+..++++ |
T Consensus         1 ms~~ki~ivgSgl~g~~WAmlFAs~GyqVqlYDI~e~Ql~~ALen~~Kel~~Lee~g~lrGnlsa~eqla~is~t~~l~E   80 (313)
T KOG2305|consen    1 MSFGKIAIVGSGLVGSSWAMLFASSGYQVQLYDILEKQLQTALENVEKELRKLEEHGLLRGNLSADEQLALISGTTSLNE   80 (313)
T ss_pred             CCccceeEeecccccchHHHHHhccCceEEEeeccHHHHHHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhCCccHHH
Confidence            4578999999999999999999999999999999999999988888877776666543321 2345666788889998 6


Q ss_pred             CCCCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCcHHHHHhhcCCCCcEEeecC
Q psy9056         296 PFKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPITKIAAASKRPDKVRNMGR  358 (359)
Q Consensus       296 ~l~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~rvig~h~  358 (359)
                      .++++=.|.||+||++++|+.++++|+..+.+.+|+.|+||+++++.+.+.+-++++++..|+
T Consensus        81 ~vk~Ai~iQEcvpE~L~lkk~ly~qlD~i~d~~tIlaSSTSt~mpS~~s~gL~~k~q~lvaHP  143 (313)
T KOG2305|consen   81 LVKGAIHIQECVPEDLNLKKQLYKQLDEIADPTTILASSTSTFMPSKFSAGLINKEQCLVAHP  143 (313)
T ss_pred             HHhhhhhHHhhchHhhHHHHHHHHHHHHhcCCceEEeccccccChHHHhhhhhhhhheeEecC
Confidence            689999999999999999999999999999999999999999999999999999999999996

>KOG1683|consensus

Probab=99.58  E-value=8.1e-15  Score=137.77  Aligned_cols=129  Identities=45%  Similarity=0.683  Sum_probs=123.4

Q ss_pred             chHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcCCCCCccEEEEcccCC
Q psy9056         231 MGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPFKNADMVIEAVFED  310 (359)
Q Consensus       231 mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~aD~Vi~avp~~  310 (359)
                      ||.+||..+..+|++|++.|.|...++.....+...+......+.+++........+++.+.|+..++++|+|++++.++
T Consensus         1 MG~gia~~~~~~~i~~vl~~~n~~~~~~~~~~v~a~l~~~~~~~~~~~~~~~~~~~~L~~~~Dy~~~~~~dmvieav~ed   80 (380)
T KOG1683|consen    1 MGAGIAIVFILAGIRTVLVDANVALLARGILQLAAHLNSEVKRGRLSGLEREKTKSNLVETLDYTGFANADMVIEAVFED   80 (380)
T ss_pred             CcchHHHHHHHcCCcEEEEeccHHHHHHhHHHHHHhhhHHHhhccccccchhhhhhhcccccccccccccceeccchhhh
Confidence            89999999999999999999999999988888888899999999999888888888899999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhCCCCcEEEEcCCCCcHHHHHhhcCCCCcEEeecCC
Q psy9056         311 INIKHQVIKEIEAVVPPHCVVATNTSAIPITKIAAASKRPDKVRNMGRI  359 (359)
Q Consensus       311 ~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~rvig~h~~  359 (359)
                      .++|++++++|.+.+++++|+.+|+|++++..+.+.++.|++++|+|||
T Consensus        81 l~Lk~~l~~~le~v~~~~~i~gsntSs~~~~~isa~ld~~e~vvg~h~f  129 (380)
T KOG1683|consen   81 LELKHELFKSLEKVEPPKCIRGSNTSSLDINVISAGLDRPEMVVGMHFF  129 (380)
T ss_pred             HHHHHHHHHHHHhhcCCcceeeeccccCChHHHhhccCchhhhcccccc
Confidence            9999999999999999999999999999999999999999999999997

>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate

Probab=99.38  E-value=6.7e-13  Score=114.20  Aligned_cols=105  Identities=17%  Similarity=0.258  Sum_probs=79.9

Q ss_pred             EEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CCCCCc
Q psy9056         222 TVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DPFKNA  300 (359)
Q Consensus       222 kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~l~~a  300 (359)
                      ||+|||+|+||.++|..++.+|++|++|+++++.++...+.-.+.  .+...        .....++.+++|+ ++++++
T Consensus         1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~~~~~~i~~~~~n~--~~~~~--------~~l~~~i~~t~dl~~a~~~a   70 (157)
T PF01210_consen    1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDEEQIEEINETRQNP--KYLPG--------IKLPENIKATTDLEEALEDA   70 (157)
T ss_dssp             EEEEESSSHHHHHHHHHHHHCTEEEEEETSCHHHHHHHHHHTSET--TTSTT--------SBEETTEEEESSHHHHHTT-
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhCCCC--CCCCC--------cccCcccccccCHHHHhCcc
Confidence            799999999999999999999999999999998877665422110  00110        1122467788888 568999


Q ss_pred             cEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCC
Q psy9056         301 DMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAI  338 (359)
Q Consensus       301 D~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~  338 (359)
                      |+||+++|.+.  .++++++|.++++++++|++.+.|+
T Consensus        71 d~IiiavPs~~--~~~~~~~l~~~l~~~~~ii~~~KG~  106 (157)
T PF01210_consen   71 DIIIIAVPSQA--HREVLEQLAPYLKKGQIIISATKGF  106 (157)
T ss_dssp             SEEEE-S-GGG--HHHHHHHHTTTSHTT-EEEETS-SE
T ss_pred             cEEEecccHHH--HHHHHHHHhhccCCCCEEEEecCCc
Confidence            99999999888  7899999999999999999998887

This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....

>PRK07417 arogenate dehydrogenase; Reviewed

Probab=99.35  E-value=4e-12  Score=119.52  Aligned_cols=112  Identities=16%  Similarity=0.232  Sum_probs=84.5

Q ss_pred             EEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcCCCCCcc
Q psy9056         222 TVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPFKNAD  301 (359)
Q Consensus       222 kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~aD  301 (359)
                      +|+|||+|.||.++|..|.++|++|++||++++.++.+..           .+..+           ..+++.+.++++|
T Consensus         2 ~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~~~~~~a~~-----------~g~~~-----------~~~~~~~~~~~aD   59 (279)
T PRK07417          2 KIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRESTCERAIE-----------RGLVD-----------EASTDLSLLKDCD   59 (279)
T ss_pred             eEEEEeecHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH-----------CCCcc-----------cccCCHhHhcCCC
Confidence            7999999999999999999999999999999987665432           11110           1223345678999


Q ss_pred             EEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCcHHHHHhhcCCCCcEEeecC
Q psy9056         302 MVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPITKIAAASKRPDKVRNMGR  358 (359)
Q Consensus       302 ~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~rvig~h~  358 (359)
                      +||+|+|.+.  ...+++++.++++++++|. .+++++.+.+........+++++|+
T Consensus        60 lVilavp~~~--~~~~~~~l~~~l~~~~ii~-d~~Svk~~~~~~~~~~~~~~v~~HP  113 (279)
T PRK07417         60 LVILALPIGL--LLPPSEQLIPALPPEAIVT-DVGSVKAPIVEAWEKLHPRFVGSHP  113 (279)
T ss_pred             EEEEcCCHHH--HHHHHHHHHHhCCCCcEEE-eCcchHHHHHHHHHHhhCCceeeCC
Confidence            9999999766  4578899999888888775 4555666655555444557999996

>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1

Probab=99.35  E-value=2.4e-12  Score=111.39  Aligned_cols=103  Identities=22%  Similarity=0.223  Sum_probs=73.3

Q ss_pred             ccEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CCCC
Q psy9056         220 VKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DPFK  298 (359)
Q Consensus       220 ~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~l~  298 (359)
                      |++|+|||.|.||..||..|.++||+|++||+++++.++..+                        ......++. +.++
T Consensus         1 m~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~------------------------~g~~~~~s~~e~~~   56 (163)
T PF03446_consen    1 MMKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSPEKAEALAE------------------------AGAEVADSPAEAAE   56 (163)
T ss_dssp             -BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSHHHHHHHHH------------------------TTEEEESSHHHHHH
T ss_pred             CCEEEEEchHHHHHHHHHHHHhcCCeEEeeccchhhhhhhHH------------------------hhhhhhhhhhhHhh
Confidence            689999999999999999999999999999999988776432                        123445555 5678


Q ss_pred             CccEEEEcccCCHHHHHHHHHH--HHHhCCCCcEEEEcCCCCcH--HHHHhhc
Q psy9056         299 NADMVIEAVFEDINIKHQVIKE--IEAVVPPHCVVATNTSAIPI--TKIAAAS  347 (359)
Q Consensus       299 ~aD~Vi~avp~~~~~k~~v~~~--l~~~~~~~~ii~s~ts~~~~--~~l~~~~  347 (359)
                      ++|+||.|+|++.+ .++++..  +.+.+.++++|+..++.-+-  .++++.+
T Consensus        57 ~~dvvi~~v~~~~~-v~~v~~~~~i~~~l~~g~iiid~sT~~p~~~~~~~~~~  108 (163)
T PF03446_consen   57 QADVVILCVPDDDA-VEAVLFGENILAGLRPGKIIIDMSTISPETSRELAERL  108 (163)
T ss_dssp             HBSEEEE-SSSHHH-HHHHHHCTTHGGGS-TTEEEEE-SS--HHHHHHHHHHH
T ss_pred             cccceEeecccchh-hhhhhhhhHHhhccccceEEEecCCcchhhhhhhhhhh
Confidence            89999999997665 5666766  88888999988866654432  2454444

1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....

>cd07020 Clp_protease_NfeD_1 Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease

Probab=99.33  E-value=3e-12  Score=113.28  Aligned_cols=80  Identities=19%  Similarity=0.172  Sum_probs=70.5

Q ss_pred             CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCc--------------chHhHHhhhcCh--HHHHHHHhcCCC
Q psy9056           1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGA--------------GGTQRLPKLTAL--PNVLDMTLTGKT   64 (359)
Q Consensus         1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~--------------g~~~~l~~~~g~--~~a~~~~ltg~~   64 (359)
                      |.|+|||+.|+++||+||++++  ++|+.+++..+..+..              +....+++..|.  ..+.+++++|+.
T Consensus        70 G~AasgG~~iala~D~iva~p~--a~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~~~~a~~~l~~g~~  147 (187)
T cd07020          70 ARAASAGTYILLAAHIAAMAPG--TNIGAAHPVAIGGGGGSDPVMEKKILNDAVAYIRSLAELRGRNAEWAEKAVRESLS  147 (187)
T ss_pred             CCchhHHHHHHHhCCceeECCC--CcEEeccccccCCCCcchHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCCe
Confidence            5899999999999999999988  9999999985554433              245578888897  689999999999


Q ss_pred             CCHHHHHHcCCcceecCC
Q psy9056          65 LKADKAKKMGIVDQLVEP   82 (359)
Q Consensus        65 ~~a~eA~~~Glv~~~~~~   82 (359)
                      |+++||+++||+|+++++
T Consensus       148 ~~a~eA~~~Glvd~v~~~  165 (187)
T cd07020         148 LTAEEALKLGVIDLIAAD  165 (187)
T ss_pred             ecHHHHHHcCCcccccCC
Confidence            999999999999999998

Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially c

>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=99.32  E-value=3e-12  Score=120.53  Aligned_cols=109  Identities=17%  Similarity=0.226  Sum_probs=88.3

Q ss_pred             ccEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CCCC
Q psy9056         220 VKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DPFK  298 (359)
Q Consensus       220 ~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~l~  298 (359)
                      +++|+|||+|+||+++|..++++||+|++|.++++..+++...-+  =.+++....        ..+++..++|+ ++++
T Consensus         1 ~~kI~ViGaGswGTALA~~la~ng~~V~lw~r~~~~~~~i~~~~~--N~~yLp~i~--------lp~~l~at~Dl~~a~~   70 (329)
T COG0240           1 MMKIAVIGAGSWGTALAKVLARNGHEVRLWGRDEEIVAEINETRE--NPKYLPGIL--------LPPNLKATTDLAEALD   70 (329)
T ss_pred             CceEEEEcCChHHHHHHHHHHhcCCeeEEEecCHHHHHHHHhcCc--CccccCCcc--------CCcccccccCHHHHHh
Confidence            469999999999999999999999999999999998887655311  122233222        22578888898 5678


Q ss_pred             CccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCcH
Q psy9056         299 NADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPI  340 (359)
Q Consensus       299 ~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~  340 (359)
                      ++|+|++++|.+.  .+++++++..+++++.++++.++|+..
T Consensus        71 ~ad~iv~avPs~~--~r~v~~~l~~~l~~~~~iv~~sKGie~  110 (329)
T COG0240          71 GADIIVIAVPSQA--LREVLRQLKPLLLKDAIIVSATKGLEP  110 (329)
T ss_pred             cCCEEEEECChHH--HHHHHHHHhhhccCCCeEEEEeccccC
Confidence            8999999999877  889999999899999999998887664

>PRK12491 pyrroline-5-carboxylate reductase; Reviewed

Probab=99.27  E-value=2.3e-11  Score=113.84  Aligned_cols=108  Identities=20%  Similarity=0.269  Sum_probs=86.1

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCC----eeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-C
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGY----NTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-D  295 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~----~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~  295 (359)
                      ++|+|||+|+||.+|+..|.++|+    +|+++|+++++++.+.+..                       .+..+++. +
T Consensus         3 ~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r~~~~~~~l~~~~-----------------------g~~~~~~~~e   59 (272)
T PRK12491          3 KQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLNVSNLKNASDKY-----------------------GITITTNNNE   59 (272)
T ss_pred             CeEEEECccHHHHHHHHHHHHCCCCCCceEEEECCCHHHHHHHHHhc-----------------------CcEEeCCcHH
Confidence            379999999999999999999885    6999999998766543210                       12233344 4


Q ss_pred             CCCCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCcHHHHHhhcCCCCcE
Q psy9056         296 PFKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPITKIAAASKRPDKV  353 (359)
Q Consensus       296 ~l~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~rv  353 (359)
                      .+.+||+||.|++.  ....++++++.++++++++|+|...|++++++.+.++.+.++
T Consensus        60 ~~~~aDiIiLavkP--~~~~~vl~~l~~~~~~~~lvISi~AGi~i~~l~~~l~~~~~v  115 (272)
T PRK12491         60 VANSADILILSIKP--DLYSSVINQIKDQIKNDVIVVTIAAGKSIKSTENEFDRKLKV  115 (272)
T ss_pred             HHhhCCEEEEEeCh--HHHHHHHHHHHHhhcCCcEEEEeCCCCcHHHHHHhcCCCCcE
Confidence            56899999999984  447899999999888889999999999999999998754343

>PTZ00082 L-lactate dehydrogenase; Provisional

Probab=99.27  E-value=1e-11  Score=118.78  Aligned_cols=127  Identities=20%  Similarity=0.266  Sum_probs=95.6

Q ss_pred             CccEEEEECCCcchHHHHHHHHHCCC-eeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcCCC
Q psy9056         219 PVKTVAVLGAGLMGAGIAHVTVDKGY-NTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPF  297 (359)
Q Consensus       219 ~~~kI~IIG~G~mG~~iA~~l~~~G~-~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l  297 (359)
                      +.+||+|||+|.||.++|..++..|+ +|+++|++++.++.-..++.+..    .        ......++..++|++++
T Consensus         5 ~~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~~~~~~~ld~~~~~----~--------~~~~~~~I~~~~d~~~l   72 (321)
T PTZ00082          5 KRRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKNIPQGKALDISHSN----V--------IAGSNSKVIGTNNYEDI   72 (321)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCchhhHHHHHHHhhh----h--------ccCCCeEEEECCCHHHh
Confidence            34799999999999999999999996 99999999987532211121110    0        00111256666888899


Q ss_pred             CCccEEEEcc-------------------cCCHHHHHHHHHHHHHhCCCCc-EEEEcCCCCcHHHHHhhcCCC-CcEEee
Q psy9056         298 KNADMVIEAV-------------------FEDINIKHQVIKEIEAVVPPHC-VVATNTSAIPITKIAAASKRP-DKVRNM  356 (359)
Q Consensus       298 ~~aD~Vi~av-------------------p~~~~~k~~v~~~l~~~~~~~~-ii~s~ts~~~~~~l~~~~~~~-~rvig~  356 (359)
                      ++||+||++.                   +++..+++++++.|.+++++.. |++||++.+.+..+....+.| +|++|+
T Consensus        73 ~~aDiVI~tag~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~p~a~~iv~sNP~di~t~~~~~~sg~p~~rviGl  152 (321)
T PTZ00082         73 AGSDVVIVTAGLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYCPNAFVIVITNPLDVMVKLLQEHSGLPKNKVCGM  152 (321)
T ss_pred             CCCCEEEECCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHhcCCChhhEEEe
Confidence            9999999955                   5577889999999999987643 556888888888888887765 899998


Q ss_pred             c
Q psy9056         357 G  357 (359)
Q Consensus       357 h  357 (359)
                      +
T Consensus       153 g  153 (321)
T PTZ00082        153 A  153 (321)
T ss_pred             c
Confidence            6

>PLN02688 pyrroline-5-carboxylate reductase

Probab=99.26  E-value=5e-11  Score=111.16  Aligned_cols=108  Identities=19%  Similarity=0.213  Sum_probs=84.6

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCC----eeEEe-cCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGY----NTIVK-DSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-  294 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~----~V~l~-d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-  294 (359)
                      +||+|||+|+||.+|+..|.++|+    +|++| |+++++.+...+           .             .+...++. 
T Consensus         1 ~kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~~r~~~~~~~~~~-----------~-------------g~~~~~~~~   56 (266)
T PLN02688          1 FRVGFIGAGKMAEAIARGLVASGVVPPSRISTADDSNPARRDVFQS-----------L-------------GVKTAASNT   56 (266)
T ss_pred             CeEEEECCcHHHHHHHHHHHHCCCCCcceEEEEeCCCHHHHHHHHH-----------c-------------CCEEeCChH
Confidence            379999999999999999999998    89999 999887554321           1             12333444 


Q ss_pred             CCCCCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCcHHHHHhhcCCCCcEEe
Q psy9056         295 DPFKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPITKIAAASKRPDKVRN  355 (359)
Q Consensus       295 ~~l~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~rvig  355 (359)
                      +.++++|+||+|++  ....++++.++.+.++++++|+|.+++++.+.+.+..+.. +++.
T Consensus        57 e~~~~aDvVil~v~--~~~~~~vl~~l~~~~~~~~~iIs~~~g~~~~~l~~~~~~~-~vvr  114 (266)
T PLN02688         57 EVVKSSDVIILAVK--PQVVKDVLTELRPLLSKDKLLVSVAAGITLADLQEWAGGR-RVVR  114 (266)
T ss_pred             HHHhcCCEEEEEEC--cHHHHHHHHHHHhhcCCCCEEEEecCCCcHHHHHHHcCCC-CEEE
Confidence            45788999999996  3347788888888888899988999999999999877643 5554

>PRK07679 pyrroline-5-carboxylate reductase; Reviewed

Probab=99.25  E-value=4e-11  Score=112.71  Aligned_cols=115  Identities=10%  Similarity=0.134  Sum_probs=88.0

Q ss_pred             CccEEEEECCCcchHHHHHHHHHCC----CeeEEecCCHH-HHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccC
Q psy9056         219 PVKTVAVLGAGLMGAGIAHVTVDKG----YNTIVKDSFEK-GLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLS  293 (359)
Q Consensus       219 ~~~kI~IIG~G~mG~~iA~~l~~~G----~~V~l~d~~~~-~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~  293 (359)
                      ..++|+|||+|+||.+|+..|.++|    ++|++||++++ +++......                       .+..+++
T Consensus         2 ~~mkI~~IG~G~mG~aia~~l~~~g~~~~~~v~v~~r~~~~~~~~l~~~~-----------------------g~~~~~~   58 (279)
T PRK07679          2 SIQNISFLGAGSIAEAIIGGLLHANVVKGEQITVSNRSNETRLQELHQKY-----------------------GVKGTHN   58 (279)
T ss_pred             CCCEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCCHHHHHHHHHhc-----------------------CceEeCC
Confidence            4469999999999999999999998    78999999764 434322100                       1223334


Q ss_pred             c-CCCCCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCcHHHHHhhcCCCCcEEeecC
Q psy9056         294 Y-DPFKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPITKIAAASKRPDKVRNMGR  358 (359)
Q Consensus       294 ~-~~l~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~rvig~h~  358 (359)
                      . +.+.++|+||+|+|.+.  ..+++.++.+.+.++++|+|..++++++.+.+.++...++++.|+
T Consensus        59 ~~e~~~~aDvVilav~p~~--~~~vl~~l~~~~~~~~liIs~~aGi~~~~l~~~~~~~~~v~r~mP  122 (279)
T PRK07679         59 KKELLTDANILFLAMKPKD--VAEALIPFKEYIHNNQLIISLLAGVSTHSIRNLLQKDVPIIRAMP  122 (279)
T ss_pred             HHHHHhcCCEEEEEeCHHH--HHHHHHHHHhhcCCCCEEEEECCCCCHHHHHHHcCCCCeEEEECC
Confidence            3 45688999999998555  567788898888888999999999999999988765556777764

>PRK11880 pyrroline-5-carboxylate reductase; Reviewed

Probab=99.23  E-value=5.7e-11  Score=110.82  Aligned_cols=112  Identities=17%  Similarity=0.224  Sum_probs=87.4

Q ss_pred             ccEEEEECCCcchHHHHHHHHHCC---CeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-C
Q psy9056         220 VKTVAVLGAGLMGAGIAHVTVDKG---YNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-D  295 (359)
Q Consensus       220 ~~kI~IIG~G~mG~~iA~~l~~~G---~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~  295 (359)
                      |++|+|||+|.||..++..+.++|   ++|.+||+++++.+.....+                       .+..+++. +
T Consensus         2 mm~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~r~~~~~~~~~~~~-----------------------g~~~~~~~~~   58 (267)
T PRK11880          2 MKKIGFIGGGNMASAIIGGLLASGVPAKDIIVSDPSPEKRAALAEEY-----------------------GVRAATDNQE   58 (267)
T ss_pred             CCEEEEEechHHHHHHHHHHHhCCCCcceEEEEcCCHHHHHHHHHhc-----------------------CCeecCChHH
Confidence            568999999999999999999999   78999999998766543211                       12223333 4


Q ss_pred             CCCCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCcHHHHHhhcCCCCcEEeecC
Q psy9056         296 PFKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPITKIAAASKRPDKVRNMGR  358 (359)
Q Consensus       296 ~l~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~rvig~h~  358 (359)
                      .+.++|+||+|+|.+.  .+++++++.+++  +++|+|.+++++.+.+...++...+++.+|+
T Consensus        59 ~~~~advVil~v~~~~--~~~v~~~l~~~~--~~~vvs~~~gi~~~~l~~~~~~~~~iv~~~P  117 (267)
T PRK11880         59 AAQEADVVVLAVKPQV--MEEVLSELKGQL--DKLVVSIAAGVTLARLERLLGADLPVVRAMP  117 (267)
T ss_pred             HHhcCCEEEEEcCHHH--HHHHHHHHHhhc--CCEEEEecCCCCHHHHHHhcCCCCcEEEecC
Confidence            4688999999997544  778888888776  5788899999999999988875567777775

>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins

Probab=99.23  E-value=1.9e-11  Score=116.20  Aligned_cols=122  Identities=21%  Similarity=0.232  Sum_probs=90.9

Q ss_pred             EEEECCCcchHHHHHHHHHCCC-eeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcCCCCCcc
Q psy9056         223 VAVLGAGLMGAGIAHVTVDKGY-NTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPFKNAD  301 (359)
Q Consensus       223 I~IIG~G~mG~~iA~~l~~~G~-~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~aD  301 (359)
                      |+|||+|.||..+|..++.+|+ +|+++|++++.++.....+.+..    .        ......++..+++++++++||
T Consensus         1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e~~~~g~~~dl~~~~----~--------~~~~~~~I~~t~d~~~l~dAD   68 (300)
T cd01339           1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVEGLPQGKALDISQAA----P--------ILGSDTKVTGTNDYEDIAGSD   68 (300)
T ss_pred             CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCCcHHHHHHHHHHHhh----h--------hcCCCeEEEEcCCHHHhCCCC
Confidence            6899999999999999999887 99999999875432221122110    0        001113566667788899999


Q ss_pred             EEEEcc--------------cCCHHHHHHHHHHHHHhCCCCc-EEEEcCCCCcHHHHHhhcCC-CCcEEee
Q psy9056         302 MVIEAV--------------FEDINIKHQVIKEIEAVVPPHC-VVATNTSAIPITKIAAASKR-PDKVRNM  356 (359)
Q Consensus       302 ~Vi~av--------------p~~~~~k~~v~~~l~~~~~~~~-ii~s~ts~~~~~~l~~~~~~-~~rvig~  356 (359)
                      +||+++              +++..++++++++|.++++++. |+++|+..+.+..+.+..+. |+|++|+
T Consensus        69 iVIit~g~p~~~~~~r~e~~~~n~~i~~~i~~~i~~~~p~~~iIv~sNP~di~t~~~~~~s~~~~~rviGl  139 (300)
T cd01339          69 VVVITAGIPRKPGMSRDDLLGTNAKIVKEVAENIKKYAPNAIVIVVTNPLDVMTYVAYKASGFPRNRVIGM  139 (300)
T ss_pred             EEEEecCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHhCCCHHHEEEe
Confidence            999866              6788899999999999997777 35577777777777777765 5789986

Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas

>PRK06223 malate dehydrogenase; Reviewed

Probab=99.22  E-value=3.8e-11  Score=114.41  Aligned_cols=125  Identities=22%  Similarity=0.259  Sum_probs=88.6

Q ss_pred             ccEEEEECCCcchHHHHHHHHHCCC-eeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcCCCC
Q psy9056         220 VKTVAVLGAGLMGAGIAHVTVDKGY-NTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPFK  298 (359)
Q Consensus       220 ~~kI~IIG~G~mG~~iA~~l~~~G~-~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~  298 (359)
                      |+||+|||+|.||..+|..++..|+ +|+++|++++.++.....+.+...   .         .....+++.++++++++
T Consensus         2 ~~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~~~~~~~~dl~~~~~---~---------~~~~~~i~~~~d~~~~~   69 (307)
T PRK06223          2 RKKISIIGAGNVGATLAHLLALKELGDVVLFDIVEGVPQGKALDIAEAAP---V---------EGFDTKITGTNDYEDIA   69 (307)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCchhHHHHHHHHhhhh---h---------cCCCcEEEeCCCHHHHC
Confidence            5799999999999999999999876 999999998875433222222110   0         00112466667788899


Q ss_pred             CccEEEEcc--------------cCCHHHHHHHHHHHHHhCCCCc-EEEEcCCCCcHHHHHhhcCC-CCcEEee
Q psy9056         299 NADMVIEAV--------------FEDINIKHQVIKEIEAVVPPHC-VVATNTSAIPITKIAAASKR-PDKVRNM  356 (359)
Q Consensus       299 ~aD~Vi~av--------------p~~~~~k~~v~~~l~~~~~~~~-ii~s~ts~~~~~~l~~~~~~-~~rvig~  356 (359)
                      +||+||+++              .++..++++++++|.+++++.. |+++|...+....+....+. +.|++|+
T Consensus        70 ~aDiVii~~~~p~~~~~~r~~~~~~n~~i~~~i~~~i~~~~~~~~viv~tNP~d~~~~~~~~~s~~~~~~viG~  143 (307)
T PRK06223         70 GSDVVVITAGVPRKPGMSRDDLLGINAKIMKDVAEGIKKYAPDAIVIVVTNPVDAMTYVALKESGFPKNRVIGM  143 (307)
T ss_pred             CCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHhCCCcccEEEe
Confidence            999999986              3466788999999999986553 33455555555566555554 4789986

>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional

Probab=99.21  E-value=1.6e-10  Score=113.00  Aligned_cols=100  Identities=24%  Similarity=0.399  Sum_probs=79.7

Q ss_pred             CccEEEEEC-CCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcCCC
Q psy9056         219 PVKTVAVLG-AGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPF  297 (359)
Q Consensus       219 ~~~kI~IIG-~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l  297 (359)
                      .+++|+||| .|.||.++|..|.++|++|++||+++..  .    .                              .+.+
T Consensus        97 ~~~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~~~~--~----~------------------------------~~~~  140 (374)
T PRK11199         97 DLRPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQDDWD--R----A------------------------------EDIL  140 (374)
T ss_pred             ccceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCCcch--h----H------------------------------HHHH
Confidence            568999999 8999999999999999999999986420  0    0                              0235


Q ss_pred             CCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCC--CcHHHHHhhcCCCCcEEeecCC
Q psy9056         298 KNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSA--IPITKIAAASKRPDKVRNMGRI  359 (359)
Q Consensus       298 ~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~--~~~~~l~~~~~~~~rvig~h~~  359 (359)
                      .+||+||+|+|++.  ...+++++.+ +++++||++++|.  .++..+.+.+.  .+|+|.||.
T Consensus       141 ~~aDlVilavP~~~--~~~~~~~l~~-l~~~~iv~Dv~SvK~~~~~~~~~~~~--~~fvg~HPm  199 (374)
T PRK11199        141 ADAGMVIVSVPIHL--TEEVIARLPP-LPEDCILVDLTSVKNAPLQAMLAAHS--GPVLGLHPM  199 (374)
T ss_pred             hcCCEEEEeCcHHH--HHHHHHHHhC-CCCCcEEEECCCccHHHHHHHHHhCC--CCEEeeCCC
Confidence            78999999999887  5688899888 8999999988775  34566666544  369999984

>PTZ00117 malate dehydrogenase; Provisional

Probab=99.20  E-value=4.5e-11  Score=114.42  Aligned_cols=125  Identities=19%  Similarity=0.270  Sum_probs=93.5

Q ss_pred             cEEEEECCCcchHHHHHHHHHCC-CeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcCCCCC
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKG-YNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPFKN  299 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G-~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~  299 (359)
                      +||+|||+|.||.+++..++..| .+|+++|++++.++....++.+.. .           ......++..+++++++++
T Consensus         6 ~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~~~~~g~~lDl~~~~-~-----------~~~~~~~i~~~~d~~~l~~   73 (319)
T PTZ00117          6 KKISMIGAGQIGSTVALLILQKNLGDVVLYDVIKGVPQGKALDLKHFS-T-----------LVGSNINILGTNNYEDIKD   73 (319)
T ss_pred             cEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCCccchhHHHHHhhhc-c-----------ccCCCeEEEeCCCHHHhCC
Confidence            59999999999999999999999 599999999877553222122110 0           0001124555678889999


Q ss_pred             ccEEEEcc--cCCH------------HHHHHHHHHHHHhCCCCc-EEEEcCCCCcHHHHHhhcCCC-CcEEeec
Q psy9056         300 ADMVIEAV--FEDI------------NIKHQVIKEIEAVVPPHC-VVATNTSAIPITKIAAASKRP-DKVRNMG  357 (359)
Q Consensus       300 aD~Vi~av--p~~~------------~~k~~v~~~l~~~~~~~~-ii~s~ts~~~~~~l~~~~~~~-~rvig~h  357 (359)
                      ||+||++.  |.+.            .+++++.+.+.+++++.. |++||++.+..+.+.+..+.| .|++|++
T Consensus        74 ADiVVitag~~~~~g~~r~dll~~n~~i~~~i~~~i~~~~p~a~vivvsNP~di~t~~~~~~s~~p~~rviG~g  147 (319)
T PTZ00117         74 SDVVVITAGVQRKEEMTREDLLTINGKIMKSVAESVKKYCPNAFVICVTNPLDCMVKVFQEKSGIPSNKICGMA  147 (319)
T ss_pred             CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecChHHHHHHHHHHhhCCCcccEEEec
Confidence            99999999  6666            789999999999987663 556777777777787777766 8999876

>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]

Probab=99.18  E-value=7.3e-11  Score=110.02  Aligned_cols=96  Identities=20%  Similarity=0.272  Sum_probs=74.3

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccC-cCCCCC
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLS-YDPFKN  299 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~l~~  299 (359)
                      .||++||.|.||.+||..|.++||+|++||+++++......          ..|             .....+ .+.+++
T Consensus         1 ~kIafIGLG~MG~pmA~~L~~aG~~v~v~~r~~~ka~~~~~----------~~G-------------a~~a~s~~eaa~~   57 (286)
T COG2084           1 MKIAFIGLGIMGSPMAANLLKAGHEVTVYNRTPEKAAELLA----------AAG-------------ATVAASPAEAAAE   57 (286)
T ss_pred             CeEEEEcCchhhHHHHHHHHHCCCEEEEEeCChhhhhHHHH----------HcC-------------CcccCCHHHHHHh
Confidence            48999999999999999999999999999999988432211          111             122223 367899


Q ss_pred             ccEEEEcccCCHHHHHHHH--HHHHHhCCCCcEEEEcCCCCc
Q psy9056         300 ADMVIEAVFEDINIKHQVI--KEIEAVVPPHCVVATNTSAIP  339 (359)
Q Consensus       300 aD~Vi~avp~~~~~k~~v~--~~l~~~~~~~~ii~s~ts~~~  339 (359)
                      +|+||.|+|++.++...++  ..+.+.++++++++++|+.-|
T Consensus        58 aDvVitmv~~~~~V~~V~~g~~g~~~~~~~G~i~IDmSTisp   99 (286)
T COG2084          58 ADVVITMLPDDAAVRAVLFGENGLLEGLKPGAIVIDMSTISP   99 (286)
T ss_pred             CCEEEEecCCHHHHHHHHhCccchhhcCCCCCEEEECCCCCH
Confidence            9999999998888766666  468888999999987765433

>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=99.18  E-value=5.8e-11  Score=104.80  Aligned_cols=108  Identities=26%  Similarity=0.316  Sum_probs=72.7

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHH----HhHHHHHhhccCChHHHHhhhcccccccCcC-
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIK----TGLDGAVKRKKMSALDRDRYLASLVGTLSYD-  295 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~----~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~-  295 (359)
                      +||+|||.|++|.++|..|+.+||+|+++|.|+++++.+.+...    ..++..++..        ....++.++++.+ 
T Consensus         1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~--------~~~~~l~~t~~~~~   72 (185)
T PF03721_consen    1 MKIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKEN--------VSAGRLRATTDIEE   72 (185)
T ss_dssp             -EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHH--------HHTTSEEEESEHHH
T ss_pred             CEEEEECCCcchHHHHHHHHhCCCEEEEEeCChHHHHHHhhccccccccchhhhhccc--------cccccchhhhhhhh
Confidence            58999999999999999999999999999999999887654321    1111111110        0125788888885 


Q ss_pred             CCCCccEEEEcccC--------CHHHHHHHHHHHHHhCCCCcEEEEcCC
Q psy9056         296 PFKNADMVIEAVFE--------DINIKHQVIKEIEAVVPPHCVVATNTS  336 (359)
Q Consensus       296 ~l~~aD~Vi~avp~--------~~~~k~~v~~~l~~~~~~~~ii~s~ts  336 (359)
                      ++.++|++|+|+|.        |......+.+.|.++++++++|+.-|+
T Consensus        73 ai~~adv~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~ST  121 (185)
T PF03721_consen   73 AIKDADVVFICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIEST  121 (185)
T ss_dssp             HHHH-SEEEE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEESSS
T ss_pred             hhhccceEEEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEEccE
Confidence            48999999999975        345677888999999999888764443

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....

>PRK11559 garR tartronate semialdehyde reductase; Provisional

Probab=99.16  E-value=9.8e-11  Score=110.91  Aligned_cols=105  Identities=23%  Similarity=0.320  Sum_probs=76.7

Q ss_pred             ccEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CCCC
Q psy9056         220 VKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DPFK  298 (359)
Q Consensus       220 ~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~l~  298 (359)
                      +++|+|||+|.||.++|..+++.|++|++||+++++.+....           .             ....+++. +.++
T Consensus         2 ~~~IgviG~G~mG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~-----------~-------------g~~~~~~~~e~~~   57 (296)
T PRK11559          2 TMKVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNPEAVAEVIA-----------A-------------GAETASTAKAVAE   57 (296)
T ss_pred             CceEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHH-----------C-------------CCeecCCHHHHHh
Confidence            358999999999999999999999999999999987654321           1             12233444 4568


Q ss_pred             CccEEEEcccCCHHHHHHHH--HHHHHhCCCCcEEEEcCCCCcH--HHHHhhcC
Q psy9056         299 NADMVIEAVFEDINIKHQVI--KEIEAVVPPHCVVATNTSAIPI--TKIAAASK  348 (359)
Q Consensus       299 ~aD~Vi~avp~~~~~k~~v~--~~l~~~~~~~~ii~s~ts~~~~--~~l~~~~~  348 (359)
                      ++|+||+|+|++..++..++  ..+.+.++++++|++.++..+.  ..+.+.+.
T Consensus        58 ~~d~vi~~vp~~~~~~~v~~~~~~~~~~~~~g~iiid~st~~~~~~~~l~~~~~  111 (296)
T PRK11559         58 QCDVIITMLPNSPHVKEVALGENGIIEGAKPGTVVIDMSSIAPLASREIAAALK  111 (296)
T ss_pred             cCCEEEEeCCCHHHHHHHHcCcchHhhcCCCCcEEEECCCCCHHHHHHHHHHHH
Confidence            99999999998887655544  3477778889998866655443  24555543

>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain

Probab=99.15  E-value=3.2e-11  Score=94.69  Aligned_cols=90  Identities=22%  Similarity=0.245  Sum_probs=69.5

Q ss_pred             EEEEECCCcchHHHHHHHHHCC---CeeEEe-cCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccc--cCcC
Q psy9056         222 TVAVLGAGLMGAGIAHVTVDKG---YNTIVK-DSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGT--LSYD  295 (359)
Q Consensus       222 kI~IIG~G~mG~~iA~~l~~~G---~~V~l~-d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~--~~~~  295 (359)
                      ||+|||+|+||.+++..|.++|   ++|.++ +++++++++..+...                       ..+.  +..+
T Consensus         1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~~-----------------------~~~~~~~~~~   57 (96)
T PF03807_consen    1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEYG-----------------------VQATADDNEE   57 (96)
T ss_dssp             EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHCT-----------------------TEEESEEHHH
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhhc-----------------------cccccCChHH
Confidence            7999999999999999999999   899966 999998776543211                       1222  2336


Q ss_pred             CCCCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCC
Q psy9056         296 PFKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSA  337 (359)
Q Consensus       296 ~l~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~  337 (359)
                      .++++|+||+|+|.+.  ..++++++ ....++++|+|.+.|
T Consensus        58 ~~~~advvilav~p~~--~~~v~~~i-~~~~~~~~vis~~ag   96 (96)
T PF03807_consen   58 AAQEADVVILAVKPQQ--LPEVLSEI-PHLLKGKLVISIAAG   96 (96)
T ss_dssp             HHHHTSEEEE-S-GGG--HHHHHHHH-HHHHTTSEEEEESTT
T ss_pred             hhccCCEEEEEECHHH--HHHHHHHH-hhccCCCEEEEeCCC
Confidence            6789999999998666  77899999 666788999888764

It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....

>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase

Probab=99.15  E-value=7.3e-11  Score=111.57  Aligned_cols=103  Identities=20%  Similarity=0.231  Sum_probs=74.8

Q ss_pred             EEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CCCCCc
Q psy9056         222 TVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DPFKNA  300 (359)
Q Consensus       222 kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~l~~a  300 (359)
                      +|+|||+|.||.+||..++++|++|++||+++++++.+..           .+             ....++. +.+++|
T Consensus         1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~~~~~~~~~-----------~g-------------~~~~~~~~~~~~~a   56 (291)
T TIGR01505         1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGPEVADELLA-----------AG-------------AVTAETARQVTEQA   56 (291)
T ss_pred             CEEEEEecHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHH-----------CC-------------CcccCCHHHHHhcC
Confidence            5999999999999999999999999999999987665321           11             1112233 567899


Q ss_pred             cEEEEcccCCHHHHHHHH--HHHHHhCCCCcEEEEcCCCCcH--HHHHhhcC
Q psy9056         301 DMVIEAVFEDINIKHQVI--KEIEAVVPPHCVVATNTSAIPI--TKIAAASK  348 (359)
Q Consensus       301 D~Vi~avp~~~~~k~~v~--~~l~~~~~~~~ii~s~ts~~~~--~~l~~~~~  348 (359)
                      |+||+|+|++..++..++  ..+...++++++|++.++..+.  .++.+.+.
T Consensus        57 Divi~~vp~~~~~~~v~~~~~~~~~~~~~g~iivd~st~~~~~~~~l~~~l~  108 (291)
T TIGR01505        57 DVIFTMVPDSPQVEEVAFGENGIIEGAKPGKTLVDMSSISPIESKRFAKAVK  108 (291)
T ss_pred             CEEEEecCCHHHHHHHHcCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHH
Confidence            999999998877655544  3366777888988865554443  24555543

This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.

>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional

Probab=99.13  E-value=1.8e-10  Score=109.17  Aligned_cols=97  Identities=15%  Similarity=0.204  Sum_probs=72.3

Q ss_pred             ccEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CCCC
Q psy9056         220 VKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DPFK  298 (359)
Q Consensus       220 ~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~l~  298 (359)
                      |++|+|||+|+||.+||..|+++|++|++||+++++.+....           .+             ....++. +.++
T Consensus         1 m~~Ig~IGlG~mG~~mA~~l~~~G~~V~v~d~~~~~~~~~~~-----------~g-------------~~~~~s~~~~~~   56 (296)
T PRK15461          1 MAAIAFIGLGQMGSPMASNLLKQGHQLQVFDVNPQAVDALVD-----------KG-------------ATPAASPAQAAA   56 (296)
T ss_pred             CCeEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHH-----------cC-------------CcccCCHHHHHh
Confidence            468999999999999999999999999999999988665432           11             1223333 5678


Q ss_pred             CccEEEEcccCCHHHHHHHH--HHHHHhCCCCcEEEEcCCCCcH
Q psy9056         299 NADMVIEAVFEDINIKHQVI--KEIEAVVPPHCVVATNTSAIPI  340 (359)
Q Consensus       299 ~aD~Vi~avp~~~~~k~~v~--~~l~~~~~~~~ii~s~ts~~~~  340 (359)
                      ++|+||+|+|++..+...+.  ..+.+.+++++++++.++..+.
T Consensus        57 ~aDvVi~~vp~~~~~~~vl~~~~~i~~~l~~g~lvid~sT~~p~  100 (296)
T PRK15461         57 GAEFVITMLPNGDLVRSVLFGENGVCEGLSRDALVIDMSTIHPL  100 (296)
T ss_pred             cCCEEEEecCCHHHHHHHHcCcccHhhcCCCCCEEEECCCCCHH
Confidence            99999999998765544433  2466677888888776665544

>PRK06545 prephenate dehydrogenase; Validated

Probab=99.12  E-value=2.4e-10  Score=111.26  Aligned_cols=116  Identities=16%  Similarity=0.144  Sum_probs=82.2

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CCCCC
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DPFKN  299 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~l~~  299 (359)
                      ++|+|||+|.||.++|..+.++|++|.+|+++++..+....         ...+..+           ..+++. +.+++
T Consensus         1 ~~I~iIG~GliG~siA~~L~~~G~~v~i~~~~~~~~~~~~a---------~~~~~~~-----------~~~~~~~~~~~~   60 (359)
T PRK06545          1 RTVLIVGLGLIGGSLALAIKAAGPDVFIIGYDPSAAQLARA---------LGFGVID-----------ELAADLQRAAAE   60 (359)
T ss_pred             CeEEEEEeCHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHHH---------hcCCCCc-----------ccccCHHHHhcC
Confidence            47999999999999999999999999999998765332211         0111100           122333 45789


Q ss_pred             ccEEEEcccCCHHHHHHHHHHHHH-hCCCCcEEEEcCCCC--cHHHHHhhcCCCCcEEeecC
Q psy9056         300 ADMVIEAVFEDINIKHQVIKEIEA-VVPPHCVVATNTSAI--PITKIAAASKRPDKVRNMGR  358 (359)
Q Consensus       300 aD~Vi~avp~~~~~k~~v~~~l~~-~~~~~~ii~s~ts~~--~~~~l~~~~~~~~rvig~h~  358 (359)
                      ||+||+|+|.+.  ...+++++.+ .++++++|.+.+|..  .++.+........++++.|+
T Consensus        61 aDlVilavP~~~--~~~vl~~l~~~~l~~~~ivtDv~SvK~~i~~~~~~~~~~~~~~ig~HP  120 (359)
T PRK06545         61 ADLIVLAVPVDA--TAALLAELADLELKPGVIVTDVGSVKGAILAEAEALLGDLIRFVGGHP  120 (359)
T ss_pred             CCEEEEeCCHHH--HHHHHHHHhhcCCCCCcEEEeCccccHHHHHHHHHhcCCCCeEEeeCC
Confidence            999999999764  6799999987 478888886555432  23455555455678999996

>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated

Probab=99.12  E-value=1.7e-10  Score=110.47  Aligned_cols=109  Identities=21%  Similarity=0.274  Sum_probs=79.3

Q ss_pred             ccEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CCCC
Q psy9056         220 VKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DPFK  298 (359)
Q Consensus       220 ~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~l~  298 (359)
                      |++|+|||+|.||+.+|..|+++|++|.+||+++++++.........  ... .+       .....++..+++. +.++
T Consensus         1 mmkI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~--~~~-~~-------~~~~~~~~~~~~~~~~~~   70 (325)
T PRK00094          1 MMKIAVLGAGSWGTALAIVLARNGHDVTLWARDPEQAAEINADRENP--RYL-PG-------IKLPDNLRATTDLAEALA   70 (325)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCccc--ccC-CC-------CcCCCCeEEeCCHHHHHh
Confidence            46899999999999999999999999999999998877654321000  000 00       0001134445555 3578


Q ss_pred             CccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCcH
Q psy9056         299 NADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPI  340 (359)
Q Consensus       299 ~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~  340 (359)
                      ++|+||+|+|..  ..+.+++++.++++++++|++.++|+..
T Consensus        71 ~~D~vi~~v~~~--~~~~v~~~l~~~~~~~~~vi~~~ngv~~  110 (325)
T PRK00094         71 DADLILVAVPSQ--ALREVLKQLKPLLPPDAPIVWATKGIEP  110 (325)
T ss_pred             CCCEEEEeCCHH--HHHHHHHHHHhhcCCCCEEEEEeecccC
Confidence            999999999974  4778889999998999998888776664

>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional

Probab=99.12  E-value=5.4e-10  Score=110.72  Aligned_cols=108  Identities=20%  Similarity=0.143  Sum_probs=75.5

Q ss_pred             CCccEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHH----HhHHHHHhhccCChHHHHhhhcccccccC
Q psy9056         218 TPVKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIK----TGLDGAVKRKKMSALDRDRYLASLVGTLS  293 (359)
Q Consensus       218 ~~~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~----~~l~~~~~~~~~~~~~~~~~~~~i~~~~~  293 (359)
                      |.+++|+|||+|+||.++|..|+++||+|++||+++++++.......    ..++..+...        ...+++..+++
T Consensus         1 m~~~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~l~~~--------~~~g~l~~~~~   72 (415)
T PRK11064          1 MSFETISVIGLGYIGLPTAAAFASRQKQVIGVDINQHAVDTINRGEIHIVEPDLDMVVKTA--------VEGGYLRATTT   72 (415)
T ss_pred             CCccEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHHHHHHHHCCCCCcCCCCHHHHHHHH--------hhcCceeeecc
Confidence            56789999999999999999999999999999999998886432110    0011110000        00123444443


Q ss_pred             cCCCCCccEEEEcccCC--------HHHHHHHHHHHHHhCCCCcEEEEcCC
Q psy9056         294 YDPFKNADMVIEAVFED--------INIKHQVIKEIEAVVPPHCVVATNTS  336 (359)
Q Consensus       294 ~~~l~~aD~Vi~avp~~--------~~~k~~v~~~l~~~~~~~~ii~s~ts  336 (359)
                         +++||+||+|+|.+        ......+.+.+.++++++++|+..|+
T Consensus        73 ---~~~aDvvii~vptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~ST  120 (415)
T PRK11064         73 ---PEPADAFLIAVPTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILEST  120 (415)
T ss_pred             ---cccCCEEEEEcCCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCC
Confidence               45899999999974        35566778889999999998765444

>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins

Probab=99.11  E-value=2.2e-10  Score=94.55  Aligned_cols=115  Identities=19%  Similarity=0.217  Sum_probs=73.4

Q ss_pred             ccEEEEECCCcchHHHHHHHHHCCCeeEEe-cCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcCCCC
Q psy9056         220 VKTVAVLGAGLMGAGIAHVTVDKGYNTIVK-DSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPFK  298 (359)
Q Consensus       220 ~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~-d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~  298 (359)
                      -.||+|||+|++|..++..|.++||+|..+ .++++..+.+...+.                      ...+.+..+.+.
T Consensus        10 ~l~I~iIGaGrVG~~La~aL~~ag~~v~~v~srs~~sa~~a~~~~~----------------------~~~~~~~~~~~~   67 (127)
T PF10727_consen   10 RLKIGIIGAGRVGTALARALARAGHEVVGVYSRSPASAERAAAFIG----------------------AGAILDLEEILR   67 (127)
T ss_dssp             --EEEEECTSCCCCHHHHHHHHTTSEEEEESSCHH-HHHHHHC--T----------------------T-----TTGGGC
T ss_pred             ccEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCcccccccccccc----------------------cccccccccccc
Confidence            369999999999999999999999998665 787766555432111                      111222225679


Q ss_pred             CccEEEEcccCCHHHHHHHHHHHHHh--CCCCcEEEEcCCCCcHHHHHhhcCCCCcEEeecC
Q psy9056         299 NADMVIEAVFEDINIKHQVIKEIEAV--VPPHCVVATNTSAIPITKIAAASKRPDKVRNMGR  358 (359)
Q Consensus       299 ~aD~Vi~avp~~~~~k~~v~~~l~~~--~~~~~ii~s~ts~~~~~~l~~~~~~~~rvig~h~  358 (359)
                      ++|++|+++|++.  ...+.++|..+  ..++++|+-++-..+.+.+...-.....+..+|+
T Consensus        68 ~aDlv~iavpDda--I~~va~~La~~~~~~~g~iVvHtSGa~~~~vL~p~~~~Ga~~~s~HP  127 (127)
T PF10727_consen   68 DADLVFIAVPDDA--IAEVAEQLAQYGAWRPGQIVVHTSGALGSDVLAPARERGAIVASLHP  127 (127)
T ss_dssp             C-SEEEE-S-CCH--HHHHHHHHHCC--S-TT-EEEES-SS--GGGGHHHHHTT-EEEEEEE
T ss_pred             cCCEEEEEechHH--HHHHHHHHHHhccCCCCcEEEECCCCChHHhhhhHHHCCCeEEEeCc
Confidence            9999999999997  78999999887  7789988755555666666554444455666664

This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.

>TIGR01915 npdG NADPH-dependent F420 reductase

Probab=99.11  E-value=3.8e-10  Score=102.38  Aligned_cols=105  Identities=20%  Similarity=0.204  Sum_probs=74.6

Q ss_pred             cEEEEEC-CCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcCCCCC
Q psy9056         221 KTVAVLG-AGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPFKN  299 (359)
Q Consensus       221 ~kI~IIG-~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~  299 (359)
                      +||+||| +|+||++++..|+++|++|++|++++++++.......+.+.   ..+ +.        .++..++..+.+++
T Consensus         1 MkI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~~~~~~l~~~~~~~~~---~~g-~~--------~~~~~~~~~ea~~~   68 (219)
T TIGR01915         1 MKIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDLEKAEEAAAKALEELG---HGG-SD--------IKVTGADNAEAAKR   68 (219)
T ss_pred             CEEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCHHHHHHHHHHHHhhcc---ccC-CC--------ceEEEeChHHHHhc
Confidence            3799997 89999999999999999999999999887665432211100   001 00        01222233356889


Q ss_pred             ccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCcH
Q psy9056         300 ADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPI  340 (359)
Q Consensus       300 aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~  340 (359)
                      +|+||+|+|.+.  ..++++++...+. +++|++.+++++.
T Consensus        69 aDvVilavp~~~--~~~~l~~l~~~l~-~~vvI~~~ngi~~  106 (219)
T TIGR01915        69 ADVVILAVPWDH--VLKTLESLRDELS-GKLVISPVVPLAS  106 (219)
T ss_pred             CCEEEEECCHHH--HHHHHHHHHHhcc-CCEEEEeccCcee
Confidence            999999998555  5678888877665 4888899888776

This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.

>PLN02256 arogenate dehydrogenase

Probab=99.11  E-value=3e-10  Score=107.88  Aligned_cols=114  Identities=11%  Similarity=0.060  Sum_probs=83.9

Q ss_pred             CCccEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcC-C
Q psy9056         218 TPVKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYD-P  296 (359)
Q Consensus       218 ~~~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~  296 (359)
                      ++.++|+|||+|.||.+++..+.+.|++|++||+++.. +.+.           ..|             +...++.+ .
T Consensus        34 ~~~~kI~IIG~G~mG~slA~~L~~~G~~V~~~d~~~~~-~~a~-----------~~g-------------v~~~~~~~e~   88 (304)
T PLN02256         34 SRKLKIGIVGFGNFGQFLAKTFVKQGHTVLATSRSDYS-DIAA-----------ELG-------------VSFFRDPDDF   88 (304)
T ss_pred             CCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECccHH-HHHH-----------HcC-------------CeeeCCHHHH
Confidence            34578999999999999999999999999999998632 1111           001             11223332 2


Q ss_pred             C-CCccEEEEcccCCHHHHHHHHHHH-HHhCCCCcEEEEcCC--CCcHHHHHhhcCCCCcEEeecC
Q psy9056         297 F-KNADMVIEAVFEDINIKHQVIKEI-EAVVPPHCVVATNTS--AIPITKIAAASKRPDKVRNMGR  358 (359)
Q Consensus       297 l-~~aD~Vi~avp~~~~~k~~v~~~l-~~~~~~~~ii~s~ts--~~~~~~l~~~~~~~~rvig~h~  358 (359)
                      + .++|+||+|+|.+.  ...+++++ ..+++++++|++.+|  +..++.+.+.++...++|++|+
T Consensus        89 ~~~~aDvVilavp~~~--~~~vl~~l~~~~l~~~~iviDv~SvK~~~~~~~~~~l~~~~~~V~~HP  152 (304)
T PLN02256         89 CEEHPDVVLLCTSILS--TEAVLRSLPLQRLKRSTLFVDVLSVKEFPKNLLLQVLPEEFDILCTHP  152 (304)
T ss_pred             hhCCCCEEEEecCHHH--HHHHHHhhhhhccCCCCEEEecCCchHHHHHHHHHhCCCCCeEEecCC
Confidence            3 46999999998654  66888888 567889999988888  4556777777765567999997

>PRK07502 cyclohexadienyl dehydrogenase; Validated

Probab=99.11  E-value=5.1e-10  Score=106.66  Aligned_cols=118  Identities=23%  Similarity=0.176  Sum_probs=83.3

Q ss_pred             CCccEEEEECCCcchHHHHHHHHHCCC--eeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-
Q psy9056         218 TPVKTVAVLGAGLMGAGIAHVTVDKGY--NTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-  294 (359)
Q Consensus       218 ~~~~kI~IIG~G~mG~~iA~~l~~~G~--~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-  294 (359)
                      +.+++|+|||+|.||.+++..+.+.|+  +|++||++++.++.+..           .+..           ....++. 
T Consensus         4 ~~~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~-----------~g~~-----------~~~~~~~~   61 (307)
T PRK07502          4 PLFDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARE-----------LGLG-----------DRVTTSAA   61 (307)
T ss_pred             cCCcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHh-----------CCCC-----------ceecCCHH
Confidence            456899999999999999999999995  89999999987654321           1110           0112233 


Q ss_pred             CCCCCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCC--cHHHHHhhcCCCCcEEeecCC
Q psy9056         295 DPFKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAI--PITKIAAASKRPDKVRNMGRI  359 (359)
Q Consensus       295 ~~l~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~--~~~~l~~~~~~~~rvig~h~~  359 (359)
                      +.++++|+||+|+|...  ...+++++.++++++++|++.++.-  .+..+........++++.|+.
T Consensus        62 ~~~~~aDvViiavp~~~--~~~v~~~l~~~l~~~~iv~dvgs~k~~~~~~~~~~~~~~~~~v~~hPm  126 (307)
T PRK07502         62 EAVKGADLVILCVPVGA--SGAVAAEIAPHLKPGAIVTDVGSVKASVIAAMAPHLPEGVHFIPGHPL  126 (307)
T ss_pred             HHhcCCCEEEECCCHHH--HHHHHHHHHhhCCCCCEEEeCccchHHHHHHHHHhCCCCCeEEeCCCC
Confidence            45789999999999755  5678888888888898876554421  123344444444589999863

>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=99.10  E-value=6.3e-10  Score=106.18  Aligned_cols=114  Identities=18%  Similarity=0.212  Sum_probs=85.0

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCCh-HHHHhhhcccccccCcCCCCC
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSA-LDRDRYLASLVGTLSYDPFKN  299 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~l~~  299 (359)
                      .+|+|||+|++|.++|..++++|++|+.+|+|+.+++...+......+...+     . .......+++..|+|.+.++.
T Consensus        10 ~~I~ViGLGYVGLPlA~~fA~~G~~ViG~DIn~~~Vd~ln~G~~~i~e~~~~-----~~v~~~v~~g~lraTtd~~~l~~   84 (436)
T COG0677          10 ATIGVIGLGYVGLPLAAAFASAGFKVIGVDINQKKVDKLNRGESYIEEPDLD-----EVVKEAVESGKLRATTDPEELKE   84 (436)
T ss_pred             eEEEEEccccccHHHHHHHHHcCCceEeEeCCHHHHHHHhCCcceeecCcHH-----HHHHHHHhcCCceEecChhhccc
Confidence            7999999999999999999999999999999999988765432111100000     0 000112246888999999999


Q ss_pred             ccEEEEcccC--------CHHHHHHHHHHHHHhCCCCcEEEEcCCCCc
Q psy9056         300 ADMVIEAVFE--------DINIKHQVIKEIEAVVPPHCVVATNTSAIP  339 (359)
Q Consensus       300 aD~Vi~avp~--------~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~  339 (359)
                      ||++|+|||.        |+.......+.|.++++.+.+|+..|+..|
T Consensus        85 ~dv~iI~VPTPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~P  132 (436)
T COG0677          85 CDVFIICVPTPLKKYREPDLSYVESAARSIAPVLKKGDLVILESTTPP  132 (436)
T ss_pred             CCEEEEEecCCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecCCCC
Confidence            9999999996        444566777889999999998876555443

>PRK08655 prephenate dehydrogenase; Provisional

Probab=99.10  E-value=3.3e-10  Score=112.92  Aligned_cols=113  Identities=21%  Similarity=0.243  Sum_probs=86.2

Q ss_pred             cEEEEEC-CCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CCCC
Q psy9056         221 KTVAVLG-AGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DPFK  298 (359)
Q Consensus       221 ~kI~IIG-~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~l~  298 (359)
                      ++|+||| .|.||.++|..+.++|++|++||++++..+.....          .             .+..+++. +.+.
T Consensus         1 MkI~IIGG~G~mG~slA~~L~~~G~~V~v~~r~~~~~~~~a~~----------~-------------gv~~~~~~~e~~~   57 (437)
T PRK08655          1 MKISIIGGTGGLGKWFARFLKEKGFEVIVTGRDPKKGKEVAKE----------L-------------GVEYANDNIDAAK   57 (437)
T ss_pred             CEEEEEecCCHHHHHHHHHHHHCCCEEEEEECChHHHHHHHHH----------c-------------CCeeccCHHHHhc
Confidence            3799998 79999999999999999999999998764332110          0             12223343 4578


Q ss_pred             CccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCC--CCcHHHHHhhcCCCCcEEeecC
Q psy9056         299 NADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTS--AIPITKIAAASKRPDKVRNMGR  358 (359)
Q Consensus       299 ~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts--~~~~~~l~~~~~~~~rvig~h~  358 (359)
                      ++|+||+|+|.+.  ...+++++.++++++++|++.+|  +.+.+.+.+.++...++++.|+
T Consensus        58 ~aDvVIlavp~~~--~~~vl~~l~~~l~~~~iViDvsSvK~~~~~~l~~~~~~~~~~V~~HP  117 (437)
T PRK08655         58 DADIVIISVPINV--TEDVIKEVAPHVKEGSLLMDVTSVKERPVEAMEEYAPEGVEILPTHP  117 (437)
T ss_pred             cCCEEEEecCHHH--HHHHHHHHHhhCCCCCEEEEcccccHHHHHHHHHhcCCCCEEEEcCC
Confidence            9999999999755  56888999999999999988877  3445667766655568999995

>PRK08229 2-dehydropantoate 2-reductase; Provisional

Probab=99.09  E-value=5.1e-10  Score=108.05  Aligned_cols=120  Identities=16%  Similarity=0.144  Sum_probs=82.4

Q ss_pred             ccEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcCCCCC
Q psy9056         220 VKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPFKN  299 (359)
Q Consensus       220 ~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~  299 (359)
                      |++|+|||+|.||..+|..|+++|++|++||+++. .+...+.   .+    ...............++.++++.+.+.+
T Consensus         2 ~mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~~~-~~~~~~~---g~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~   73 (341)
T PRK08229          2 MARICVLGAGSIGCYLGGRLAAAGADVTLIGRARI-GDELRAH---GL----TLTDYRGRDVRVPPSAIAFSTDPAALAT   73 (341)
T ss_pred             CceEEEECCCHHHHHHHHHHHhcCCcEEEEecHHH-HHHHHhc---Cc----eeecCCCcceecccceeEeccChhhccC
Confidence            46899999999999999999999999999998653 2322110   00    0000000000001123445566667789


Q ss_pred             ccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCcH-HHHHhhcCC
Q psy9056         300 ADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPI-TKIAAASKR  349 (359)
Q Consensus       300 aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~-~~l~~~~~~  349 (359)
                      +|+||+|++...  ..++++.+.++++++++|++.++|+.. +.+...++.
T Consensus        74 ~D~vil~vk~~~--~~~~~~~l~~~~~~~~iii~~~nG~~~~~~l~~~~~~  122 (341)
T PRK08229         74 ADLVLVTVKSAA--TADAAAALAGHARPGAVVVSFQNGVRNADVLRAALPG  122 (341)
T ss_pred             CCEEEEEecCcc--hHHHHHHHHhhCCCCCEEEEeCCCCCcHHHHHHhCCC
Confidence            999999998765  568889999999999999888888875 456666653

>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating)

Probab=99.09  E-value=9.6e-10  Score=104.36  Aligned_cols=96  Identities=15%  Similarity=0.192  Sum_probs=73.1

Q ss_pred             EEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CCCCCc
Q psy9056         222 TVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DPFKNA  300 (359)
Q Consensus       222 kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~l~~a  300 (359)
                      +|+|||+|.||.++|..++++|++|.+||+++++++...+.           +...          .....+. +.+..+
T Consensus         2 ~Ig~IGlG~mG~~la~~L~~~g~~V~~~dr~~~~~~~l~~~-----------g~~~----------~~s~~~~~~~~~~~   60 (298)
T TIGR00872         2 QLGLIGLGRMGANIVRRLAKRGHDCVGYDHDQDAVKAMKED-----------RTTG----------VANLRELSQRLSAP   60 (298)
T ss_pred             EEEEEcchHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHc-----------CCcc----------cCCHHHHHhhcCCC
Confidence            79999999999999999999999999999999987664321           1100          0000111 345779


Q ss_pred             cEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCcH
Q psy9056         301 DMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPI  340 (359)
Q Consensus       301 D~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~  340 (359)
                      |+||.|+|.+  ..+.+++++.++++++.+|++.+++.+.
T Consensus        61 dvIi~~vp~~--~~~~v~~~l~~~l~~g~ivid~st~~~~   98 (298)
T TIGR00872        61 RVVWVMVPHG--IVDAVLEELAPTLEKGDIVIDGGNSYYK   98 (298)
T ss_pred             CEEEEEcCch--HHHHHHHHHHhhCCCCCEEEECCCCCcc
Confidence            9999999987  3778889999999999999887776543

This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.

>PRK08507 prephenate dehydrogenase; Validated

Probab=99.08  E-value=7e-10  Score=104.08  Aligned_cols=110  Identities=16%  Similarity=0.233  Sum_probs=76.4

Q ss_pred             EEEEECCCcchHHHHHHHHHCCC--eeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcCCCCC
Q psy9056         222 TVAVLGAGLMGAGIAHVTVDKGY--NTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPFKN  299 (359)
Q Consensus       222 kI~IIG~G~mG~~iA~~l~~~G~--~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~  299 (359)
                      +|+|||+|.||.+++..+.++|+  +|++||+++++++.+.+           .|.            ....++.+.+.+
T Consensus         2 ~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~~-----------~g~------------~~~~~~~~~~~~   58 (275)
T PRK08507          2 KIGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHLKKALE-----------LGL------------VDEIVSFEELKK   58 (275)
T ss_pred             EEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHH-----------CCC------------CcccCCHHHHhc
Confidence            79999999999999999999996  79999999987665321           111            111223333445


Q ss_pred             ccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCc-HHHHHhhcCCCCcEEeecC
Q psy9056         300 ADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIP-ITKIAAASKRPDKVRNMGR  358 (359)
Q Consensus       300 aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~-~~~l~~~~~~~~rvig~h~  358 (359)
                      +|+||+|+|.+.  ...++.++.+ ++++++|++.++... +.+..... .+.++++.|+
T Consensus        59 aD~Vilavp~~~--~~~~~~~l~~-l~~~~iv~d~gs~k~~i~~~~~~~-~~~~~v~~hP  114 (275)
T PRK08507         59 CDVIFLAIPVDA--IIEILPKLLD-IKENTTIIDLGSTKAKIIESVPKH-IRKNFIAAHP  114 (275)
T ss_pred             CCEEEEeCcHHH--HHHHHHHHhc-cCCCCEEEECccchHHHHHHHHHh-cCCCEEecCC
Confidence            999999999766  5578888888 888998887655322 12222111 2357889986

>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases

Probab=99.07  E-value=3.6e-11  Score=119.37  Aligned_cols=125  Identities=16%  Similarity=0.087  Sum_probs=92.0

Q ss_pred             EEEEECCCcchHHHHH--HH----HHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-
Q psy9056         222 TVAVLGAGLMGAGIAH--VT----VDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-  294 (359)
Q Consensus       222 kI~IIG~G~mG~~iA~--~l----~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-  294 (359)
                      ||+|||+|+||.+++.  .+    ..+|++|++||+++++++.....+++.+...    .        ...++..++|+ 
T Consensus         2 KIaIIGaGs~G~a~a~~~~i~~~~~~~g~eV~L~Did~e~l~~~~~~~~~~~~~~----~--------~~~~I~~ttD~~   69 (423)
T cd05297           2 KIAFIGAGSVVFTKNLVGDLLKTPELSGSTIALMDIDEERLETVEILAKKIVEEL----G--------APLKIEATTDRR   69 (423)
T ss_pred             eEEEECCChHHhHHHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHhc----C--------CCeEEEEeCCHH
Confidence            7999999999998766  33    4557899999999999888766554433221    1        11357778886 


Q ss_pred             CCCCCccEEEEcccC----------CHHHHHHHHHHHHHhCCCCcEEEEcCCCCcHHHHHhhcCC--CCcEEeecCC
Q psy9056         295 DPFKNADMVIEAVFE----------DINIKHQVIKEIEAVVPPHCVVATNTSAIPITKIAAASKR--PDKVRNMGRI  359 (359)
Q Consensus       295 ~~l~~aD~Vi~avp~----------~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~--~~rvig~h~~  359 (359)
                      +++++||+||++++.          +..+|..++.++.+.+++++++.+++|...+.+++..+..  | +.+.+||+
T Consensus        70 eal~~AD~Vi~ai~~~~~~~~~~de~i~~K~g~~~~~~~t~g~ggi~~~~~s~~~i~~ia~~i~~~~p-~a~~i~~t  145 (423)
T cd05297          70 EALDGADFVINTIQVGGHEYTETDFEIPEKYGYYQTVGDTSGPGGIFRALRTIPVLLDIARDIEELCP-DAWLLNYA  145 (423)
T ss_pred             HHhcCCCEEEEeeEecCccchhhhhhhHHHcCeeeeccCCCcHHHHHHHHhhHHHHHHHHHHHHHHCC-CCEEEEcC
Confidence            689999999999982          4666777777777778888877777777777777766653  4 66677764

linked to 3D####ucture

>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase

Probab=99.07  E-value=6.8e-10  Score=110.03  Aligned_cols=106  Identities=21%  Similarity=0.267  Sum_probs=76.1

Q ss_pred             EEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHH----hHHHHHhhccCChHHHHhhhcccccccCc-CC
Q psy9056         222 TVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKT----GLDGAVKRKKMSALDRDRYLASLVGTLSY-DP  296 (359)
Q Consensus       222 kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~----~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~  296 (359)
                      +|+|||+|+||.++|..++++||+|++||+++++++........    .++......        ...++++++++. +.
T Consensus         2 kI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~~v~~l~~g~~~~~e~~l~~~~~~~--------~~~g~l~~~~~~~~~   73 (411)
T TIGR03026         2 KIAVIGLGYVGLPLAALLADLGHEVTGVDIDQEKVDKLNKGKSPIYEPGLDELLAKA--------LAAGRLRATTDYEDA   73 (411)
T ss_pred             EEEEECCCchhHHHHHHHHhcCCeEEEEECCHHHHHHhhcCCCCCCCCCHHHHHHHh--------hhcCCeEEECCHHHH
Confidence            79999999999999999999999999999999988765432100    011110000        001236666776 45


Q ss_pred             CCCccEEEEcccCCH--------HHHHHHHHHHHHhCCCCcEEEEcC
Q psy9056         297 FKNADMVIEAVFEDI--------NIKHQVIKEIEAVVPPHCVVATNT  335 (359)
Q Consensus       297 l~~aD~Vi~avp~~~--------~~k~~v~~~l~~~~~~~~ii~s~t  335 (359)
                      ++++|+||+|+|.+.        .....+.+.+.++++++++|+..|
T Consensus        74 ~~~advvii~vpt~~~~~~~~d~~~v~~~~~~i~~~l~~g~lvi~~S  120 (411)
T TIGR03026        74 IRDADVIIICVPTPLKEDGSPDLSYVESAAETIAKHLRKGATVVLES  120 (411)
T ss_pred             HhhCCEEEEEeCCCCCCCCCcChHHHHHHHHHHHHhcCCCCEEEEeC
Confidence            899999999999764        345677788888888998877544

All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.

>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]

Probab=99.07  E-value=9e-10  Score=101.81  Aligned_cols=103  Identities=20%  Similarity=0.267  Sum_probs=84.5

Q ss_pred             ccEEEEECCCcchHHHHHHHHHCC----CeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-
Q psy9056         220 VKTVAVLGAGLMGAGIAHVTVDKG----YNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-  294 (359)
Q Consensus       220 ~~kI~IIG~G~mG~~iA~~l~~~G----~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-  294 (359)
                      +++|+|||+|+||.+|+..|.++|    .+|++.++++++++.....+.                       +..+++. 
T Consensus         1 ~~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~~e~~~~l~~~~g-----------------------~~~~~~~~   57 (266)
T COG0345           1 MMKIGFIGAGNMGEAILSGLLKSGALPPEEIIVTNRSEEKRAALAAEYG-----------------------VVTTTDNQ   57 (266)
T ss_pred             CceEEEEccCHHHHHHHHHHHhcCCCCcceEEEeCCCHHHHHHHHHHcC-----------------------CcccCcHH
Confidence            468999999999999999999999    589999999998764332111                       1123444 


Q ss_pred             CCCCCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCcHHHHHhhcC
Q psy9056         295 DPFKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPITKIAAASK  348 (359)
Q Consensus       295 ~~l~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~  348 (359)
                      +.+.++|+||+|+  ++....++++++.. ..++.+|+|...|++++.+...++
T Consensus        58 ~~~~~advv~Lav--KPq~~~~vl~~l~~-~~~~~lvISiaAGv~~~~l~~~l~  108 (266)
T COG0345          58 EAVEEADVVFLAV--KPQDLEEVLSKLKP-LTKDKLVISIAAGVSIETLERLLG  108 (266)
T ss_pred             HHHhhCCEEEEEe--ChHhHHHHHHHhhc-ccCCCEEEEEeCCCCHHHHHHHcC
Confidence            5678899999999  45668899999988 778999999999999999999997

>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]

Probab=99.06  E-value=9e-10  Score=103.07  Aligned_cols=115  Identities=18%  Similarity=0.208  Sum_probs=83.1

Q ss_pred             ccEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHH--HHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccC--cC
Q psy9056         220 VKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKG--LARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLS--YD  295 (359)
Q Consensus       220 ~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~--l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~--~~  295 (359)
                      +++|+|+|.|.||.++|..+..+|+.|.+++++.+.  ++.+           .+.+..+         .  .+.+  .+
T Consensus         3 ~~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a-----------~~lgv~d---------~--~~~~~~~~   60 (279)
T COG0287           3 SMKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAA-----------LELGVID---------E--LTVAGLAE   60 (279)
T ss_pred             CcEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHH-----------hhcCccc---------c--cccchhhh
Confidence            579999999999999999999999988777666543  2221           1112111         0  1112  35


Q ss_pred             CCCCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCc--HHHHHhhcCCCCcEEeecC
Q psy9056         296 PFKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIP--ITKIAAASKRPDKVRNMGR  358 (359)
Q Consensus       296 ~l~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~--~~~l~~~~~~~~rvig~h~  358 (359)
                      .+.++|+||.|||-..  ...+++++.++++++++|++.+|...  ++.+.+..+...+|+|+|+
T Consensus        61 ~~~~aD~VivavPi~~--~~~~l~~l~~~l~~g~iv~Dv~S~K~~v~~a~~~~~~~~~~~vg~HP  123 (279)
T COG0287          61 AAAEADLVIVAVPIEA--TEEVLKELAPHLKKGAIVTDVGSVKSSVVEAMEKYLPGDVRFVGGHP  123 (279)
T ss_pred             hcccCCEEEEeccHHH--HHHHHHHhcccCCCCCEEEecccccHHHHHHHHHhccCCCeeEecCC
Confidence            6788999999999777  55999999999999999988777533  4555555543238999997

>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=99.06  E-value=6.3e-10  Score=106.50  Aligned_cols=110  Identities=25%  Similarity=0.321  Sum_probs=85.4

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHH----HHhHHHHHhhccCChHHHHhhhcccccccCcC-
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQI----KTGLDGAVKRKKMSALDRDRYLASLVGTLSYD-  295 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~----~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~-  295 (359)
                      +||+|+|.|++|...+.+|+..||+|+++|.++++++.+.+..    +..++.+++.+..        -+|+++|+|++ 
T Consensus         1 MkI~viGtGYVGLv~g~~lA~~GHeVv~vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~~--------~gRl~fTtd~~~   72 (414)
T COG1004           1 MKITVIGTGYVGLVTGACLAELGHEVVCVDIDESKVELLNKGISPIYEPGLEELLKENLA--------SGRLRFTTDYEE   72 (414)
T ss_pred             CceEEECCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHhCCCCCCcCccHHHHHHhccc--------cCcEEEEcCHHH
Confidence            5899999999999999999999999999999999999877653    2334444443322        14699999994 


Q ss_pred             CCCCccEEEEcccC--------CHHHHHHHHHHHHHhCCCCcEEEEcCCCCc
Q psy9056         296 PFKNADMVIEAVFE--------DINIKHQVIKEIEAVVPPHCVVATNTSAIP  339 (359)
Q Consensus       296 ~l~~aD~Vi~avp~--------~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~  339 (359)
                      +++++|++|+|||.        |......+.+.|.++++..++|+ +-|++|
T Consensus        73 a~~~adv~fIavgTP~~~dg~aDl~~V~ava~~i~~~~~~~~vvV-~KSTVP  123 (414)
T COG1004          73 AVKDADVVFIAVGTPPDEDGSADLSYVEAVAKDIGEILDGKAVVV-IKSTVP  123 (414)
T ss_pred             HHhcCCEEEEEcCCCCCCCCCccHHHHHHHHHHHHhhcCCCeEEE-EcCCCC
Confidence            68999999999976        44467788899999988766654 333444

>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent

Probab=99.05  E-value=5.3e-10  Score=106.34  Aligned_cols=123  Identities=19%  Similarity=0.192  Sum_probs=84.5

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCC-eeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcCCCCC
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGY-NTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPFKN  299 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~-~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~  299 (359)
                      +||+|||+|+||..+|..++..|+ +|+++|++++..+.....+.+   ..         .......++++++|++++++
T Consensus         2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~~l~~g~a~d~~~---~~---------~~~~~~~~i~~t~d~~~~~~   69 (305)
T TIGR01763         2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVEGIPQGKALDMYE---AS---------PVGGFDTKVTGTNNYADTAN   69 (305)
T ss_pred             CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCCChhHHHHHhhhh---hh---------hccCCCcEEEecCCHHHhCC
Confidence            489999999999999999999887 899999986643311111111   00         00111246777888877999


Q ss_pred             ccEEEEccc--------------CCHHHHHHHHHHHHHhCCCCcEEEEcC--CCCcHHHHHhhcCC-CCcEEee
Q psy9056         300 ADMVIEAVF--------------EDINIKHQVIKEIEAVVPPHCVVATNT--SAIPITKIAAASKR-PDKVRNM  356 (359)
Q Consensus       300 aD~Vi~avp--------------~~~~~k~~v~~~l~~~~~~~~ii~s~t--s~~~~~~l~~~~~~-~~rvig~  356 (359)
                      ||+||++++              .|..+.+++.++|.++. ++.+|+..|  ..+....+....+. +.|++|+
T Consensus        70 aDiVIitag~p~~~~~sR~~l~~~N~~iv~~i~~~I~~~~-p~~~iIv~tNP~di~t~~~~~~sg~~~~rviG~  142 (305)
T TIGR01763        70 SDIVVITAGLPRKPGMSREDLLSMNAGIVREVTGRIMEHS-PNPIIVVVSNPLDAMTYVAWQKSGFPKERVIGQ  142 (305)
T ss_pred             CCEEEEcCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCcHHHHHHHHHHHHCcCHHHEEEe
Confidence            999999997              24567777888899886 455554444  44444556666554 4789886

The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.

>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+))

Probab=99.05  E-value=2.8e-10  Score=109.59  Aligned_cols=108  Identities=17%  Similarity=0.157  Sum_probs=80.1

Q ss_pred             EEEEECCCcchHHHHHHHHHCC--------CeeEEecC-----CHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhccc
Q psy9056         222 TVAVLGAGLMGAGIAHVTVDKG--------YNTIVKDS-----FEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASL  288 (359)
Q Consensus       222 kI~IIG~G~mG~~iA~~l~~~G--------~~V~l~d~-----~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i  288 (359)
                      ||+|||+|+||+++|..++.+|        ++|.+|.+     +++..+......        +..++.++  -...+++
T Consensus         1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~--------~n~~ylpg--i~Lp~~i   70 (342)
T TIGR03376         1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEIINTTH--------ENVKYLPG--IKLPANL   70 (342)
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHHHHHHhcC--------CCccccCC--CcCCCCe
Confidence            6899999999999999999999        99999998     443333222211        11111000  1123567


Q ss_pred             ccccCc-CCCCCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCcHH
Q psy9056         289 VGTLSY-DPFKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPIT  341 (359)
Q Consensus       289 ~~~~~~-~~l~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~  341 (359)
                      ++++|+ +.++++|+||.++|.+.  .+.+++++.++++++.++++.++|+..+
T Consensus        71 ~at~dl~eal~~ADiIIlAVPs~~--i~~vl~~l~~~l~~~~~iVs~tKGie~~  122 (342)
T TIGR03376        71 VAVPDLVEAAKGADILVFVIPHQF--LEGICKQLKGHVKPNARAISCIKGLEVS  122 (342)
T ss_pred             EEECCHHHHHhcCCEEEEECChHH--HHHHHHHHHhhcCCCCEEEEEeCCcccC
Confidence            788888 56899999999999777  7899999999999888999988877654

Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.

>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional

Probab=99.04  E-value=2e-10  Score=111.42  Aligned_cols=112  Identities=18%  Similarity=0.160  Sum_probs=80.1

Q ss_pred             cEEEEECCCcchHHHHHHHHHCC-------CeeEEecCCHHH-HHHHHHHHHHhHHHHHhhccCChHHHHhhhccccccc
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKG-------YNTIVKDSFEKG-LARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTL  292 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G-------~~V~l~d~~~~~-l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~  292 (359)
                      .+|+|||+|.||+++|..++.+|       ++|.+|.++++. -+...+.++..    ....++.++  ....+++..++
T Consensus        12 ~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~----~~N~~ylp~--~~Lp~ni~~ts   85 (365)
T PTZ00345         12 LKVSVIGSGNWGSAISKVVGENTQRNYIFHNEVRMWVLEEIVEGEKLSDIINTK----HENVKYLPG--IKLPDNIVAVS   85 (365)
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEecccccchHHHHHHHhc----CCCcccCCC--CcCCCceEEec
Confidence            58999999999999999999998       799999999862 11111222211    011111110  12335788888


Q ss_pred             Cc-CCCCCccEEEEcccCCHHHHHHHHHHHHH--hCCCCcEEEEcCCCCcH
Q psy9056         293 SY-DPFKNADMVIEAVFEDINIKHQVIKEIEA--VVPPHCVVATNTSAIPI  340 (359)
Q Consensus       293 ~~-~~l~~aD~Vi~avp~~~~~k~~v~~~l~~--~~~~~~ii~s~ts~~~~  340 (359)
                      |+ ++++++|+||.++|.+.  .+++++++.+  +++++.+++|.+.|+..
T Consensus        86 dl~eav~~aDiIvlAVPsq~--l~~vl~~l~~~~~l~~~~~iIS~aKGIe~  134 (365)
T PTZ00345         86 DLKEAVEDADLLIFVIPHQF--LESVLSQIKENNNLKKHARAISLTKGIIV  134 (365)
T ss_pred             CHHHHHhcCCEEEEEcChHH--HHHHHHHhccccccCCCCEEEEEeCCccc
Confidence            87 56899999999998666  8899999998  77777788888777653

>PRK07680 late competence protein ComER; Validated

Probab=99.02  E-value=9.5e-10  Score=103.06  Aligned_cols=103  Identities=10%  Similarity=0.152  Sum_probs=80.7

Q ss_pred             EEEEECCCcchHHHHHHHHHCCC----eeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CC
Q psy9056         222 TVAVLGAGLMGAGIAHVTVDKGY----NTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DP  296 (359)
Q Consensus       222 kI~IIG~G~mG~~iA~~l~~~G~----~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~  296 (359)
                      +|+|||+|+||.+++..|.++|+    +|.+||+++++.+...+..                      ..+..+.+. +.
T Consensus         2 ~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r~~~~~~~~~~~~----------------------~g~~~~~~~~~~   59 (273)
T PRK07680          2 NIGFIGTGNMGTILIEAFLESGAVKPSQLTITNRTPAKAYHIKERY----------------------PGIHVAKTIEEV   59 (273)
T ss_pred             EEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCHHHHHHHHHHc----------------------CCeEEECCHHHH
Confidence            69999999999999999999994    7999999998765432110                      012333344 44


Q ss_pred             CCCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCcHHHHHhhcC
Q psy9056         297 FKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPITKIAAASK  348 (359)
Q Consensus       297 l~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~  348 (359)
                      +.++|+||+|+|.+.  ..++++++.+++.++++|++.+++++++.+...++
T Consensus        60 ~~~aDiVilav~p~~--~~~vl~~l~~~l~~~~~iis~~ag~~~~~L~~~~~  109 (273)
T PRK07680         60 ISQSDLIFICVKPLD--IYPLLQKLAPHLTDEHCLVSITSPISVEQLETLVP  109 (273)
T ss_pred             HHhCCEEEEecCHHH--HHHHHHHHHhhcCCCCEEEEECCCCCHHHHHHHcC
Confidence            788999999997433  67888999888888899999999999999988765

>PTZ00142 6-phosphogluconate dehydrogenase; Provisional

Probab=99.02  E-value=7.5e-10  Score=110.89  Aligned_cols=103  Identities=12%  Similarity=0.195  Sum_probs=77.2

Q ss_pred             ccEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-C---
Q psy9056         220 VKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-D---  295 (359)
Q Consensus       220 ~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~---  295 (359)
                      |.+|+|||+|.||++||..++++||+|.+||+++++.+...+...+       .+.           .+..+++. +   
T Consensus         1 ~~~IgvIGLG~MG~~lA~nL~~~G~~V~v~dr~~~~~~~l~~~~~~-------~g~-----------~i~~~~s~~e~v~   62 (470)
T PTZ00142          1 MSDIGLIGLAVMGQNLALNIASRGFKISVYNRTYEKTEEFVKKAKE-------GNT-----------RVKGYHTLEELVN   62 (470)
T ss_pred             CCEEEEEeEhHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhhhh-------cCC-----------cceecCCHHHHHh
Confidence            4589999999999999999999999999999999987775432110       010           12233343 2   


Q ss_pred             CCCCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCcHH
Q psy9056         296 PFKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPIT  341 (359)
Q Consensus       296 ~l~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~  341 (359)
                      .++.+|+||.++|.... .+.+++++.+++.++.||++.+++.+..
T Consensus        63 ~l~~~d~Iil~v~~~~~-v~~vi~~l~~~L~~g~iIID~gn~~~~d  107 (470)
T PTZ00142         63 SLKKPRKVILLIKAGEA-VDETIDNLLPLLEKGDIIIDGGNEWYLN  107 (470)
T ss_pred             cCCCCCEEEEEeCChHH-HHHHHHHHHhhCCCCCEEEECCCCCHHH
Confidence            23468999999885554 6777889999999999999888876554

>PRK15057 UDP-glucose 6-dehydrogenase; Provisional

Probab=99.01  E-value=7e-10  Score=108.83  Aligned_cols=106  Identities=19%  Similarity=0.268  Sum_probs=72.4

Q ss_pred             EEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CCCCCc
Q psy9056         222 TVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DPFKNA  300 (359)
Q Consensus       222 kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~l~~a  300 (359)
                      ||+|||+|+||.++|..++. ||+|++||+++++++.+.+......+..++..      ......+++.+++. +.++++
T Consensus         2 kI~VIGlGyvGl~~A~~lA~-G~~VigvD~d~~kv~~l~~g~~~~~e~~l~~~------l~~~~~~l~~t~~~~~~~~~a   74 (388)
T PRK15057          2 KITISGTGYVGLSNGLLIAQ-NHEVVALDILPSRVAMLNDRISPIVDKEIQQF------LQSDKIHFNATLDKNEAYRDA   74 (388)
T ss_pred             EEEEECCCHHHHHHHHHHHh-CCcEEEEECCHHHHHHHHcCCCCCCCcCHHHH------HHhCCCcEEEecchhhhhcCC
Confidence            79999999999999988875 99999999999998887664322211111110      00011234455554 557999


Q ss_pred             cEEEEcccCCH---------HHHHHHHHHHHHhCCCCcEEEEcC
Q psy9056         301 DMVIEAVFEDI---------NIKHQVIKEIEAVVPPHCVVATNT  335 (359)
Q Consensus       301 D~Vi~avp~~~---------~~k~~v~~~l~~~~~~~~ii~s~t  335 (359)
                      |+||+|+|++.         ...+.+++.|.. ++++++|+..|
T Consensus        75 d~vii~Vpt~~~~k~~~~dl~~v~~v~~~i~~-~~~g~lVV~~S  117 (388)
T PRK15057         75 DYVIIATPTDYDPKTNYFNTSSVESVIKDVVE-INPYAVMVIKS  117 (388)
T ss_pred             CEEEEeCCCCCccCCCCcChHHHHHHHHHHHh-cCCCCEEEEee
Confidence            99999999873         344566677877 57778765433

>PRK06928 pyrroline-5-carboxylate reductase; Reviewed

Probab=99.00  E-value=2.1e-09  Score=101.03  Aligned_cols=106  Identities=13%  Similarity=0.157  Sum_probs=80.9

Q ss_pred             ccEEEEECCCcchHHHHHHHHHCC----CeeEEecCCHHH-HHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc
Q psy9056         220 VKTVAVLGAGLMGAGIAHVTVDKG----YNTIVKDSFEKG-LARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY  294 (359)
Q Consensus       220 ~~kI~IIG~G~mG~~iA~~l~~~G----~~V~l~d~~~~~-l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~  294 (359)
                      |.+|+|||+|+||.+++..+.++|    ++|++|+++++. ++....       .               ......+++.
T Consensus         1 m~~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r~~~~~~~~l~~-------~---------------~~~~~~~~~~   58 (277)
T PRK06928          1 MEKIGFIGYGSMADMIATKLLETEVATPEEIILYSSSKNEHFNQLYD-------K---------------YPTVELADNE   58 (277)
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCCCCcccEEEEeCCcHHHHHHHHH-------H---------------cCCeEEeCCH
Confidence            568999999999999999999998    789999987532 222111       0               0012223343


Q ss_pred             -CCCCCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCcHHHHHhhcCC
Q psy9056         295 -DPFKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPITKIAAASKR  349 (359)
Q Consensus       295 -~~l~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~  349 (359)
                       +.+.++|+||+|+|.+.  ..++++++.++++++++|+|.+.|++++++.+.++.
T Consensus        59 ~e~~~~aDvVilavpp~~--~~~vl~~l~~~l~~~~~ivS~~aGi~~~~l~~~~~~  112 (277)
T PRK06928         59 AEIFTKCDHSFICVPPLA--VLPLLKDCAPVLTPDRHVVSIAAGVSLDDLLEITPG  112 (277)
T ss_pred             HHHHhhCCEEEEecCHHH--HHHHHHHHHhhcCCCCEEEEECCCCCHHHHHHHcCC
Confidence             45789999999998444  778999998888888899999999999999998763

>PRK07634 pyrroline-5-carboxylate reductase; Reviewed

Probab=99.00  E-value=2.9e-09  Score=97.94  Aligned_cols=113  Identities=14%  Similarity=0.181  Sum_probs=82.3

Q ss_pred             CccEEEEECCCcchHHHHHHHHHCCC---e-eEEecC-CHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccC
Q psy9056         219 PVKTVAVLGAGLMGAGIAHVTVDKGY---N-TIVKDS-FEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLS  293 (359)
Q Consensus       219 ~~~kI~IIG~G~mG~~iA~~l~~~G~---~-V~l~d~-~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~  293 (359)
                      +..||+|||+|.||.+++..+.++|+   + |+++++ ++++++......                       .+..+++
T Consensus         3 ~~~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~   59 (245)
T PRK07634          3 KKHRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNRSNVEKLDQLQARY-----------------------NVSTTTD   59 (245)
T ss_pred             CCCeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECCCCHHHHHHHHHHc-----------------------CcEEeCC
Confidence            34689999999999999999998873   3 777887 456554432210                       1223344


Q ss_pred             c-CCCCCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCcHHHHHhhcCCCCcEEeec
Q psy9056         294 Y-DPFKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPITKIAAASKRPDKVRNMG  357 (359)
Q Consensus       294 ~-~~l~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~rvig~h  357 (359)
                      . +.+.++|+||+|+|.+.  .+++++++.++++ +.+|+|.+.+++++.+.+.++...+++-.|
T Consensus        60 ~~~~~~~~DiViiavp~~~--~~~v~~~l~~~~~-~~~vis~~~gi~~~~l~~~~~~~~~v~r~~  121 (245)
T PRK07634         60 WKQHVTSVDTIVLAMPPSA--HEELLAELSPLLS-NQLVVTVAAGIGPSYLEERLPKGTPVAWIM  121 (245)
T ss_pred             hHHHHhcCCEEEEecCHHH--HHHHHHHHHhhcc-CCEEEEECCCCCHHHHHHHcCCCCeEEEEC
Confidence            4 45788999999998655  6788888888765 568889999999999999886544454343

>PLN02350 phosphogluconate dehydrogenase (decarboxylating)

Probab=98.97  E-value=2.1e-09  Score=107.96  Aligned_cols=112  Identities=16%  Similarity=0.181  Sum_probs=78.9

Q ss_pred             CccEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc----
Q psy9056         219 PVKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY----  294 (359)
Q Consensus       219 ~~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~----  294 (359)
                      -+.+|||||.|.||.+||..|+++|++|.+|||++++.+...+...       ..|.          ..+....+.    
T Consensus         5 ~~~~IG~IGLG~MG~~mA~nL~~~G~~V~V~NRt~~k~~~l~~~~~-------~~Ga----------~~~~~a~s~~e~v   67 (493)
T PLN02350          5 ALSRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAK-------KEGN----------LPLYGFKDPEDFV   67 (493)
T ss_pred             CCCCEEEEeeHHHHHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhh-------hcCC----------cccccCCCHHHHH
Confidence            4568999999999999999999999999999999998776543110       0011          011222233    


Q ss_pred             CCCCCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCcH--HHHHhhcC
Q psy9056         295 DPFKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPI--TKIAAASK  348 (359)
Q Consensus       295 ~~l~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~--~~l~~~~~  348 (359)
                      +.++.+|+||.|+|.+.. .++++..+.+.+.++.||++.++..+.  ..+.+.+.
T Consensus        68 ~~l~~~dvIi~~v~~~~a-V~~Vi~gl~~~l~~G~iiID~sT~~~~~t~~~~~~l~  122 (493)
T PLN02350         68 LSIQKPRSVIILVKAGAP-VDQTIKALSEYMEPGDCIIDGGNEWYENTERRIKEAA  122 (493)
T ss_pred             hcCCCCCEEEEECCCcHH-HHHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHH
Confidence            234459999999997776 456668888888899999877765443  34444443

>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=98.96  E-value=3.1e-09  Score=100.96  Aligned_cols=101  Identities=15%  Similarity=0.163  Sum_probs=72.5

Q ss_pred             EEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CCC---
Q psy9056         222 TVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DPF---  297 (359)
Q Consensus       222 kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~l---  297 (359)
                      +|+|||+|.||.+||..+.++|++|++||+++++.+...+           .+             .....+. +.+   
T Consensus         2 ~Ig~IGlG~mG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~-----------~g-------------~~~~~s~~~~~~~~   57 (299)
T PRK12490          2 KLGLIGLGKMGGNMAERLREDGHEVVGYDVNQEAVDVAGK-----------LG-------------ITARHSLEELVSKL   57 (299)
T ss_pred             EEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHH-----------CC-------------CeecCCHHHHHHhC
Confidence            7999999999999999999999999999999987665321           11             1222233 222   


Q ss_pred             CCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCcH--HHHHhhc
Q psy9056         298 KNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPI--TKIAAAS  347 (359)
Q Consensus       298 ~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~--~~l~~~~  347 (359)
                      ..+|+||.|+|.+.. .+.++..+.+.++++.+|+..++..+.  .++.+.+
T Consensus        58 ~~advVi~~vp~~~~-~~~v~~~i~~~l~~g~ivid~st~~~~~~~~~~~~~  108 (299)
T PRK12490         58 EAPRTIWVMVPAGEV-TESVIKDLYPLLSPGDIVVDGGNSRYKDDLRRAEEL  108 (299)
T ss_pred             CCCCEEEEEecCchH-HHHHHHHHhccCCCCCEEEECCCCCchhHHHHHHHH
Confidence            337999999998744 556778888888888888876554442  3444444

>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family

Probab=98.96  E-value=1.5e-09  Score=101.22  Aligned_cols=121  Identities=23%  Similarity=0.271  Sum_probs=90.0

Q ss_pred             EEEECC-CcchHHHHHHHHHCC----CeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccC-cCC
Q psy9056         223 VAVLGA-GLMGAGIAHVTVDKG----YNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLS-YDP  296 (359)
Q Consensus       223 I~IIG~-G~mG~~iA~~l~~~G----~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~  296 (359)
                      |+|||+ |.||..++..++..|    .+|+++|+++++++.....+++.....             ...+++.++| +++
T Consensus         1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~-------------~~~~i~~~~d~~~~   67 (263)
T cd00650           1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPL-------------ADIKVSITDDPYEA   67 (263)
T ss_pred             CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhhhc-------------cCcEEEECCchHHH
Confidence            689999 999999999999999    699999999988887666655433221             0125666777 488


Q ss_pred             CCCccEEEE--------------cccCCHHHHHHHHHHHHHhCCCCcEEEEcCCC--CcHHHHHhhcCC-CCcEEeec
Q psy9056         297 FKNADMVIE--------------AVFEDINIKHQVIKEIEAVVPPHCVVATNTSA--IPITKIAAASKR-PDKVRNMG  357 (359)
Q Consensus       297 l~~aD~Vi~--------------avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~--~~~~~l~~~~~~-~~rvig~h  357 (359)
                      +++||+||+              .+.++..+++++++.+.+++ ++.+++..|+.  +....+.+..+. +.|++|+.
T Consensus        68 ~~~aDiVv~t~~~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~-p~a~~i~~tNP~d~~t~~~~~~sg~~~~kviG~~  144 (263)
T cd00650          68 FKDADVVIITAGVGRKPGMGRLDLLKRNVPIVKEIGDNIEKYS-PDAWIIVVSNPVDIITYLVWRYSGLPKEKVIGLG  144 (263)
T ss_pred             hCCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCcHHHHHHHHHHHhCCCchhEEEee
Confidence            999999999              56677889999999999998 55655544443  333445455443 58899864

Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains

>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]

Probab=98.93  E-value=4e-09  Score=93.35  Aligned_cols=95  Identities=24%  Similarity=0.307  Sum_probs=72.9

Q ss_pred             ccEEEEECCCcchHHHHHHHHHCCCeeEEecCCH-HHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcCCCC
Q psy9056         220 VKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFE-KGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPFK  298 (359)
Q Consensus       220 ~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~-~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~  298 (359)
                      |++|+|+|.|++|.++|..|+++||+|++-.++. ++++...+.+.                     ..++..+..++++
T Consensus         1 m~~~~i~GtGniG~alA~~~a~ag~eV~igs~r~~~~~~a~a~~l~---------------------~~i~~~~~~dA~~   59 (211)
T COG2085           1 MMIIAIIGTGNIGSALALRLAKAGHEVIIGSSRGPKALAAAAAALG---------------------PLITGGSNEDAAA   59 (211)
T ss_pred             CcEEEEeccChHHHHHHHHHHhCCCeEEEecCCChhHHHHHHHhhc---------------------cccccCChHHHHh
Confidence            6899999999999999999999999999996554 44444333222                     1244444457789


Q ss_pred             CccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCC
Q psy9056         299 NADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAI  338 (359)
Q Consensus       299 ~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~  338 (359)
                      .+|+||.++|-..  ..++++++.+.+. ++||++.+..+
T Consensus        60 ~aDVVvLAVP~~a--~~~v~~~l~~~~~-~KIvID~tnp~   96 (211)
T COG2085          60 LADVVVLAVPFEA--IPDVLAELRDALG-GKIVIDATNPI   96 (211)
T ss_pred             cCCEEEEeccHHH--HHhHHHHHHHHhC-CeEEEecCCCc
Confidence            9999999998555  6689999998776 88988877753

>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=98.93  E-value=3.5e-09  Score=102.41  Aligned_cols=111  Identities=17%  Similarity=0.166  Sum_probs=82.5

Q ss_pred             CCccEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CC
Q psy9056         218 TPVKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DP  296 (359)
Q Consensus       218 ~~~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~  296 (359)
                      ..++||+|||+|.||+.+|..++++| +|++|.++++..+.+.+...+  ..+...+       .....++..++|. +.
T Consensus         5 ~~~mkI~IiGaGa~G~alA~~La~~g-~v~l~~~~~~~~~~i~~~~~~--~~~l~~~-------~~l~~~i~~t~d~~~a   74 (341)
T PRK12439          5 KREPKVVVLGGGSWGTTVASICARRG-PTLQWVRSAETADDINDNHRN--SRYLGND-------VVLSDTLRATTDFAEA   74 (341)
T ss_pred             cCCCeEEEECCCHHHHHHHHHHHHCC-CEEEEeCCHHHHHHHHhcCCC--cccCCCC-------cccCCCeEEECCHHHH
Confidence            34578999999999999999999999 689999999887765432100  0000000       0111345667776 46


Q ss_pred             CCCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCcH
Q psy9056         297 FKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPI  340 (359)
Q Consensus       297 l~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~  340 (359)
                      ++++|+||+|+|...  .+.+++++.+++++++++++.++|+..
T Consensus        75 ~~~aDlVilavps~~--~~~vl~~i~~~l~~~~~vIsl~kGi~~  116 (341)
T PRK12439         75 ANCADVVVMGVPSHG--FRGVLTELAKELRPWVPVVSLVKGLEQ  116 (341)
T ss_pred             HhcCCEEEEEeCHHH--HHHHHHHHHhhcCCCCEEEEEEeCCcC
Confidence            899999999998554  789999999999999888888888875

>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=98.93  E-value=3.1e-09  Score=102.22  Aligned_cols=104  Identities=20%  Similarity=0.141  Sum_probs=71.9

Q ss_pred             ccEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CCCC
Q psy9056         220 VKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DPFK  298 (359)
Q Consensus       220 ~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~l~  298 (359)
                      +++|+|||+|.||.++|..|+++|++|++|++++++.+.+.....+..  ... +       .....++..+++. +.++
T Consensus         4 ~m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~~~~~~i~~~~~~~~--~~~-g-------~~~~~~~~~~~~~~e~~~   73 (328)
T PRK14618          4 GMRVAVLGAGAWGTALAVLAASKGVPVRLWARRPEFAAALAAERENRE--YLP-G-------VALPAELYPTADPEEALA   73 (328)
T ss_pred             CCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhCcccc--cCC-C-------CcCCCCeEEeCCHHHHHc
Confidence            358999999999999999999999999999999988766543211100  000 1       0011124445555 4578


Q ss_pred             CccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCc
Q psy9056         299 NADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIP  339 (359)
Q Consensus       299 ~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~  339 (359)
                      ++|+||+|+|++.  .++++    +.+++++++++.++|+.
T Consensus        74 ~aD~Vi~~v~~~~--~~~v~----~~l~~~~~vi~~~~Gi~  108 (328)
T PRK14618         74 GADFAVVAVPSKA--LRETL----AGLPRALGYVSCAKGLA  108 (328)
T ss_pred             CCCEEEEECchHH--HHHHH----HhcCcCCEEEEEeeccc
Confidence            9999999999775  34554    44567788888888765

>PRK06522 2-dehydropantoate 2-reductase; Reviewed

Probab=98.93  E-value=9.6e-09  Score=97.36  Aligned_cols=112  Identities=17%  Similarity=0.170  Sum_probs=80.4

Q ss_pred             EEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcCCCCCcc
Q psy9056         222 TVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPFKNAD  301 (359)
Q Consensus       222 kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~aD  301 (359)
                      +|+|||+|.||+.+|..|+++|++|++++++++.++.....   .+.  ...+.        ....+..+++.+.+..+|
T Consensus         2 ~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~---g~~--~~~~~--------~~~~~~~~~~~~~~~~~d   68 (304)
T PRK06522          2 KIAILGAGAIGGLFGAALAQAGHDVTLVARRGAHLDALNEN---GLR--LEDGE--------ITVPVLAADDPAELGPQD   68 (304)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCeEEEEECChHHHHHHHHc---CCc--ccCCc--------eeecccCCCChhHcCCCC
Confidence            79999999999999999999999999999988776654321   000  00110        001122334444458899


Q ss_pred             EEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCcHH-HHHhhcC
Q psy9056         302 MVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPIT-KIAAASK  348 (359)
Q Consensus       302 ~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~-~l~~~~~  348 (359)
                      +||+|++...  ...+++++.+++.++++|++..+|+... .+...++
T Consensus        69 ~vila~k~~~--~~~~~~~l~~~l~~~~~iv~~~nG~~~~~~l~~~~~  114 (304)
T PRK06522         69 LVILAVKAYQ--LPAALPSLAPLLGPDTPVLFLQNGVGHLEELAAYIG  114 (304)
T ss_pred             EEEEeccccc--HHHHHHHHhhhcCCCCEEEEecCCCCcHHHHHHhcC
Confidence            9999998665  5788999999988888888888888754 4555454

>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional

Probab=98.92  E-value=3.8e-09  Score=104.91  Aligned_cols=107  Identities=16%  Similarity=0.125  Sum_probs=75.3

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcCCCCCc
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPFKNA  300 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~a  300 (359)
                      +||+|||.|+||.++|..++. ||+|++||+++++++.+.+......+...       ... ....++.++++.+.+++|
T Consensus         7 mkI~vIGlGyvGlpmA~~la~-~~~V~g~D~~~~~ve~l~~G~~~~~e~~~-------~~l-~~~g~l~~t~~~~~~~~a   77 (425)
T PRK15182          7 VKIAIIGLGYVGLPLAVEFGK-SRQVVGFDVNKKRILELKNGVDVNLETTE-------EEL-REARYLKFTSEIEKIKEC   77 (425)
T ss_pred             CeEEEECcCcchHHHHHHHhc-CCEEEEEeCCHHHHHHHHCcCCCCCCCCH-------HHH-HhhCCeeEEeCHHHHcCC
Confidence            589999999999999999877 69999999999998876532111000000       000 011356677777778999


Q ss_pred             cEEEEcccCCH--------HHHHHHHHHHHHhCCCCcEEEEcCC
Q psy9056         301 DMVIEAVFEDI--------NIKHQVIKEIEAVVPPHCVVATNTS  336 (359)
Q Consensus       301 D~Vi~avp~~~--------~~k~~v~~~l~~~~~~~~ii~s~ts  336 (359)
                      |++|+|+|.+.        .......+.|.++++++.+|+..|+
T Consensus        78 dvvii~Vptp~~~~~~~dl~~v~~a~~~i~~~l~~g~lVI~~ST  121 (425)
T PRK15182         78 NFYIITVPTPINTYKQPDLTPLIKASETVGTVLNRGDIVVYEST  121 (425)
T ss_pred             CEEEEEcCCCCCCCCCcchHHHHHHHHHHHHhcCCCCEEEEecC
Confidence            99999999652        3334445678899998887765444

>PRK08818 prephenate dehydrogenase; Provisional

Probab=98.92  E-value=4.1e-09  Score=102.29  Aligned_cols=98  Identities=18%  Similarity=0.199  Sum_probs=74.8

Q ss_pred             cEEEEECC-CcchHHHHHHHHHC-CCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CCC
Q psy9056         221 KTVAVLGA-GLMGAGIAHVTVDK-GYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DPF  297 (359)
Q Consensus       221 ~kI~IIG~-G~mG~~iA~~l~~~-G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~l  297 (359)
                      ++|+|||. |.||.++|..|.+. |++|+.+|++++.                                   .++. +.+
T Consensus         5 ~~I~IIGl~GliGgslA~alk~~~~~~V~g~D~~d~~-----------------------------------~~~~~~~v   49 (370)
T PRK08818          5 PVVGIVGSAGAYGRWLARFLRTRMQLEVIGHDPADPG-----------------------------------SLDPATLL   49 (370)
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCCCEEEEEcCCccc-----------------------------------cCCHHHHh
Confidence            68999999 99999999999974 8999999985321                                   0111 357


Q ss_pred             CCccEEEEcccCCHHHHHHHHHHHHHh---CCCCcEEEEcCCCCc--HHHHHhhcCCCCcEEeecC
Q psy9056         298 KNADMVIEAVFEDINIKHQVIKEIEAV---VPPHCVVATNTSAIP--ITKIAAASKRPDKVRNMGR  358 (359)
Q Consensus       298 ~~aD~Vi~avp~~~~~k~~v~~~l~~~---~~~~~ii~s~ts~~~--~~~l~~~~~~~~rvig~h~  358 (359)
                      ++||+||+|+|.+.  ...+++++.++   ++++++|.+.+|...  ++.+   .....+|||+|+
T Consensus        50 ~~aDlVilavPv~~--~~~~l~~l~~~~~~l~~~~iVtDVgSvK~~i~~~~---~~~~~~fVG~HP  110 (370)
T PRK08818         50 QRADVLIFSAPIRH--TAALIEEYVALAGGRAAGQLWLDVTSIKQAPVAAM---LASQAEVVGLHP  110 (370)
T ss_pred             cCCCEEEEeCCHHH--HHHHHHHHhhhhcCCCCCeEEEECCCCcHHHHHHH---HhcCCCEEeeCC
Confidence            89999999999766  56899998876   689999988777542  2333   222346999997

>PRK06476 pyrroline-5-carboxylate reductase; Reviewed

Probab=98.92  E-value=5.7e-09  Score=96.95  Aligned_cols=106  Identities=15%  Similarity=0.141  Sum_probs=78.3

Q ss_pred             EEEEECCCcchHHHHHHHHHCCCe---eEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CCC
Q psy9056         222 TVAVLGAGLMGAGIAHVTVDKGYN---TIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DPF  297 (359)
Q Consensus       222 kI~IIG~G~mG~~iA~~l~~~G~~---V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~l  297 (359)
                      +|+|||+|+||.+++..|.++|++   |.+|++++++.+.....+                      ......++. +.+
T Consensus         2 ~IgiIG~G~mG~aia~~L~~~g~~~~~i~v~~r~~~~~~~l~~~~----------------------~~~~~~~~~~~~~   59 (258)
T PRK06476          2 KIGFIGTGAITEAMVTGLLTSPADVSEIIVSPRNAQIAARLAERF----------------------PKVRIAKDNQAVV   59 (258)
T ss_pred             eEEEECcCHHHHHHHHHHHhCCCChheEEEECCCHHHHHHHHHHc----------------------CCceEeCCHHHHH
Confidence            799999999999999999999864   588999988765433211                      012233344 346


Q ss_pred             CCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCcHHHHHhhcCCCCcE
Q psy9056         298 KNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPITKIAAASKRPDKV  353 (359)
Q Consensus       298 ~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~rv  353 (359)
                      .++|+||+|+|.  .....+++++.  ..++++|+|...+++++.+...++...++
T Consensus        60 ~~aDvVilav~p--~~~~~vl~~l~--~~~~~~vis~~ag~~~~~l~~~~~~~~~~  111 (258)
T PRK06476         60 DRSDVVFLAVRP--QIAEEVLRALR--FRPGQTVISVIAATDRAALLEWIGHDVKL  111 (258)
T ss_pred             HhCCEEEEEeCH--HHHHHHHHHhc--cCCCCEEEEECCCCCHHHHHHHhCCCCCE
Confidence            789999999984  33567777763  46788888999999999999888643333

>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=98.91  E-value=6e-09  Score=99.05  Aligned_cols=93  Identities=16%  Similarity=0.188  Sum_probs=69.7

Q ss_pred             EEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CC---C
Q psy9056         222 TVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DP---F  297 (359)
Q Consensus       222 kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~---l  297 (359)
                      +|+|||+|.||.+||..|+++|++|++||+++++.+...+           .|             ....++. +.   +
T Consensus         2 ~Ig~IGlG~MG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~-----------~g-------------~~~~~~~~e~~~~~   57 (301)
T PRK09599          2 QLGMIGLGRMGGNMARRLLRGGHEVVGYDRNPEAVEALAE-----------EG-------------ATGADSLEELVAKL   57 (301)
T ss_pred             EEEEEcccHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHH-----------CC-------------CeecCCHHHHHhhc
Confidence            7999999999999999999999999999999988665421           11             1122222 22   2


Q ss_pred             CCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCc
Q psy9056         298 KNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIP  339 (359)
Q Consensus       298 ~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~  339 (359)
                      .++|+||.++|.+.. .+.++..+.+.++++.++++.+++.+
T Consensus        58 ~~~dvvi~~v~~~~~-~~~v~~~l~~~l~~g~ivid~st~~~   98 (301)
T PRK09599         58 PAPRVVWLMVPAGEI-TDATIDELAPLLSPGDIVIDGGNSYY   98 (301)
T ss_pred             CCCCEEEEEecCCcH-HHHHHHHHHhhCCCCCEEEeCCCCCh
Confidence            347999999997643 45677888888888898887766554

>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []

Probab=98.89  E-value=1.1e-08  Score=86.34  Aligned_cols=121  Identities=21%  Similarity=0.275  Sum_probs=83.9

Q ss_pred             cEEEEECC-CcchHHHHHHHHHCCC--eeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcCCC
Q psy9056         221 KTVAVLGA-GLMGAGIAHVTVDKGY--NTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPF  297 (359)
Q Consensus       221 ~kI~IIG~-G~mG~~iA~~l~~~G~--~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l  297 (359)
                      .||+|||+ |.+|..+|..+...++  +++++|++++.++....++++......             ........+++++
T Consensus         1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~-------------~~~~i~~~~~~~~   67 (141)
T PF00056_consen    1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPLP-------------SPVRITSGDYEAL   67 (141)
T ss_dssp             SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGST-------------EEEEEEESSGGGG
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhcc-------------ccccccccccccc
Confidence            48999999 9999999999999986  899999999877776665554321110             0112234667899


Q ss_pred             CCccEEEEcccC--------------CHHHHHHHHHHHHHhCCCCcEEEEcCCCCc--HHHHHhhcC-CCCcEEe
Q psy9056         298 KNADMVIEAVFE--------------DINIKHQVIKEIEAVVPPHCVVATNTSAIP--ITKIAAASK-RPDKVRN  355 (359)
Q Consensus       298 ~~aD~Vi~avp~--------------~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~--~~~l~~~~~-~~~rvig  355 (359)
                      ++||+||++.-.              +..+.+++.+.+.++. ++.+++..|+.+.  .+.+.+..+ .|+|++|
T Consensus        68 ~~aDivvitag~~~~~g~sR~~ll~~N~~i~~~~~~~i~~~~-p~~~vivvtNPvd~~t~~~~~~s~~~~~kviG  141 (141)
T PF00056_consen   68 KDADIVVITAGVPRKPGMSRLDLLEANAKIVKEIAKKIAKYA-PDAIVIVVTNPVDVMTYVAQKYSGFPPNKVIG  141 (141)
T ss_dssp             TTESEEEETTSTSSSTTSSHHHHHHHHHHHHHHHHHHHHHHS-TTSEEEE-SSSHHHHHHHHHHHHTSSGGGEEE
T ss_pred             ccccEEEEeccccccccccHHHHHHHhHhHHHHHHHHHHHhC-CccEEEEeCCcHHHHHHHHHHhhCcCcccCcC
Confidence            999999987722              3446677788899997 5555555555544  344555555 3577876

L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....

>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase

Probab=98.89  E-value=4.8e-09  Score=99.10  Aligned_cols=91  Identities=20%  Similarity=0.208  Sum_probs=68.6

Q ss_pred             EECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CCCCCccEE
Q psy9056         225 VLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DPFKNADMV  303 (359)
Q Consensus       225 IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~l~~aD~V  303 (359)
                      |||+|.||.+||..|+++|++|++||+++++.+....           .|             ...+++. +.++++|+|
T Consensus         1 ~IGlG~mG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~-----------~g-------------~~~~~s~~~~~~~advV   56 (288)
T TIGR01692         1 FIGLGNMGGPMAANLLKAGHPVRVFDLFPDAVEEAVA-----------AG-------------AQAAASPAEAAEGADRV   56 (288)
T ss_pred             CCcccHhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHH-----------cC-------------CeecCCHHHHHhcCCEE
Confidence            6899999999999999999999999999987665422           11             2233344 567899999


Q ss_pred             EEcccCCHHHHHHHH---HHHHHhCCCCcEEEEcCCCCcHH
Q psy9056         304 IEAVFEDINIKHQVI---KEIEAVVPPHCVVATNTSAIPIT  341 (359)
Q Consensus       304 i~avp~~~~~k~~v~---~~l~~~~~~~~ii~s~ts~~~~~  341 (359)
                      |.|+|.+..+ +.++   +.+.+.++++++|++.+ ++.++
T Consensus        57 il~vp~~~~~-~~v~~g~~~l~~~~~~g~~vid~s-t~~p~   95 (288)
T TIGR01692        57 ITMLPAGQHV-ISVYSGDEGILPKVAKGSLLIDCS-TIDPD   95 (288)
T ss_pred             EEeCCChHHH-HHHHcCcchHhhcCCCCCEEEECC-CCCHH
Confidence            9999976654 4555   67777888888887666 44443

This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).

>PLN02712 arogenate dehydrogenase

Probab=98.89  E-value=9.3e-09  Score=107.29  Aligned_cols=114  Identities=11%  Similarity=0.078  Sum_probs=82.3

Q ss_pred             CCccEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcC-C
Q psy9056         218 TPVKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYD-P  296 (359)
Q Consensus       218 ~~~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~  296 (359)
                      .+.++|+|||+|.||.++|..+.+.|++|++||++... +.+.           +.|             +...++.+ .
T Consensus       367 ~~~~kIgIIGlG~mG~slA~~L~~~G~~V~~~dr~~~~-~~a~-----------~~G-------------v~~~~~~~el  421 (667)
T PLN02712        367 GSKLKIAIVGFGNFGQFLAKTMVKQGHTVLAYSRSDYS-DEAQ-----------KLG-------------VSYFSDADDL  421 (667)
T ss_pred             CCCCEEEEEecCHHHHHHHHHHHHCcCEEEEEECChHH-HHHH-----------HcC-------------CeEeCCHHHH
Confidence            45579999999999999999999999999999998542 1111           111             11223332 2


Q ss_pred             CC-CccEEEEcccCCHHHHHHHHHHHHH-hCCCCcEEEEcCCC--CcHHHHHhhcCCCCcEEeecC
Q psy9056         297 FK-NADMVIEAVFEDINIKHQVIKEIEA-VVPPHCVVATNTSA--IPITKIAAASKRPDKVRNMGR  358 (359)
Q Consensus       297 l~-~aD~Vi~avp~~~~~k~~v~~~l~~-~~~~~~ii~s~ts~--~~~~~l~~~~~~~~rvig~h~  358 (359)
                      +. .+|+||+|+|...  ...+++++.. .++++++|++.+|+  .++..+...++...++++.|+
T Consensus       422 ~~~~aDvVILavP~~~--~~~vi~~l~~~~lk~g~ivvDv~SvK~~~~~~~~~~l~~~~~~v~~HP  485 (667)
T PLN02712        422 CEEHPEVILLCTSILS--TEKVLKSLPFQRLKRSTLFVDVLSVKEFPRNLFLQHLPQDFDILCTHP  485 (667)
T ss_pred             HhcCCCEEEECCChHH--HHHHHHHHHHhcCCCCcEEEECCCccHHHHHHHHHhccCCCceEeeCC
Confidence            43 5899999999544  5677888765 57889999988776  455666666655557999997

>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=98.88  E-value=3.1e-09  Score=101.39  Aligned_cols=81  Identities=27%  Similarity=0.393  Sum_probs=65.9

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CCCCC
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DPFKN  299 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~l~~  299 (359)
                      ++|+|||+|.||.++|..|+.+||+|++|++++..                                     +. +.+++
T Consensus         5 m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~~~-------------------------------------~~~~~~~~   47 (308)
T PRK14619          5 KTIAILGAGAWGSTLAGLASANGHRVRVWSRRSGL-------------------------------------SLAAVLAD   47 (308)
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCEEEEEeCCCCC-------------------------------------CHHHHHhc
Confidence            37999999999999999999999999999998530                                     11 34678


Q ss_pred             ccEEEEcccCCHHHHHHHHHHHHHh-CCCCcEEEEcCCCCcH
Q psy9056         300 ADMVIEAVFEDINIKHQVIKEIEAV-VPPHCVVATNTSAIPI  340 (359)
Q Consensus       300 aD~Vi~avp~~~~~k~~v~~~l~~~-~~~~~ii~s~ts~~~~  340 (359)
                      +|+||+|+|.+  ..+.+++++..+ ++++++|+++++++.+
T Consensus        48 advvi~~vp~~--~~~~v~~~l~~~~~~~~~ivi~~s~gi~~   87 (308)
T PRK14619         48 ADVIVSAVSMK--GVRPVAEQVQALNLPPETIIVTATKGLDP   87 (308)
T ss_pred             CCEEEEECChH--HHHHHHHHHHHhcCCCCcEEEEeCCcccC
Confidence            99999999975  377888888774 6788888888775543

>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=98.88  E-value=7e-09  Score=99.66  Aligned_cols=107  Identities=16%  Similarity=0.131  Sum_probs=77.3

Q ss_pred             EEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcC-CC-CC
Q psy9056         222 TVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYD-PF-KN  299 (359)
Q Consensus       222 kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~l-~~  299 (359)
                      ||+|||+|.||+.+|..|+++|++|.+|+++++.++.....-.+        ....+.  .....++..+++.+ .+ .+
T Consensus         2 kI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~~~~~~i~~~~~~--------~~~~~~--~~~~~~i~~~~~~~~~~~~~   71 (326)
T PRK14620          2 KISILGAGSFGTAIAIALSSKKISVNLWGRNHTTFESINTKRKN--------LKYLPT--CHLPDNISVKSAIDEVLSDN   71 (326)
T ss_pred             EEEEECcCHHHHHHHHHHHHCCCeEEEEecCHHHHHHHHHcCCC--------cccCCC--CcCCCCeEEeCCHHHHHhCC
Confidence            69999999999999999999999999999998876655432100        000000  01112445556653 44 58


Q ss_pred             ccEEEEcccCCHHHHHHHHHHHHH-hCCCCcEEEEcCCCCcH
Q psy9056         300 ADMVIEAVFEDINIKHQVIKEIEA-VVPPHCVVATNTSAIPI  340 (359)
Q Consensus       300 aD~Vi~avp~~~~~k~~v~~~l~~-~~~~~~ii~s~ts~~~~  340 (359)
                      +|+||+++|...  ..++++++.+ ++.+++.|++.++|+..
T Consensus        72 ~Dliiiavks~~--~~~~l~~l~~~~l~~~~~vv~~~nGi~~  111 (326)
T PRK14620         72 ATCIILAVPTQQ--LRTICQQLQDCHLKKNTPILICSKGIEK  111 (326)
T ss_pred             CCEEEEEeCHHH--HHHHHHHHHHhcCCCCCEEEEEEcCeeC
Confidence            999999998666  7789999998 88888877778888743

>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating

Probab=98.87  E-value=6.8e-09  Score=104.04  Aligned_cols=100  Identities=16%  Similarity=0.246  Sum_probs=73.9

Q ss_pred             EEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc----CCC
Q psy9056         222 TVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY----DPF  297 (359)
Q Consensus       222 kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~----~~l  297 (359)
                      +|+|||+|.||.+||..++++|++|++||+++++.+...+...        .+.           .+...++.    +.+
T Consensus         1 ~IG~IGLG~MG~~mA~nL~~~G~~V~v~drt~~~~~~l~~~~~--------~g~-----------~~~~~~s~~e~v~~l   61 (467)
T TIGR00873         1 DIGVIGLAVMGSNLALNMADHGFTVSVYNRTPEKTDEFLAEHA--------KGK-----------KIVGAYSIEEFVQSL   61 (467)
T ss_pred             CEEEEeeHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHhhcc--------CCC-----------CceecCCHHHHHhhc
Confidence            4899999999999999999999999999999998776543100        010           01111122    245


Q ss_pred             CCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCcHH
Q psy9056         298 KNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPIT  341 (359)
Q Consensus       298 ~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~  341 (359)
                      +.+|+||.|+|.... .+.++.++.+++.++.||++.+++.+..
T Consensus        62 ~~~dvIil~v~~~~~-v~~Vi~~l~~~L~~g~iIID~gns~~~~  104 (467)
T TIGR00873        62 ERPRKIMLMVKAGAP-VDAVINQLLPLLEKGDIIIDGGNSHYPD  104 (467)
T ss_pred             CCCCEEEEECCCcHH-HHHHHHHHHhhCCCCCEEEECCCcCHHH
Confidence            679999999997554 5678889999999999998887765443

This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.

>KOG0409|consensus

Probab=98.86  E-value=5.1e-09  Score=96.63  Aligned_cols=107  Identities=17%  Similarity=0.186  Sum_probs=74.0

Q ss_pred             CccEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccC-cCCC
Q psy9056         219 PVKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLS-YDPF  297 (359)
Q Consensus       219 ~~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~l  297 (359)
                      ..++||+||.|+||.+|+..|.++||.|++||++.++.+...+           .|.             .+..+ .|.+
T Consensus        34 s~~~iGFIGLG~MG~~M~~nLik~G~kVtV~dr~~~k~~~f~~-----------~Ga-------------~v~~sPaeVa   89 (327)
T KOG0409|consen   34 SKTRIGFIGLGNMGSAMVSNLIKAGYKVTVYDRTKDKCKEFQE-----------AGA-------------RVANSPAEVA   89 (327)
T ss_pred             ccceeeEEeeccchHHHHHHHHHcCCEEEEEeCcHHHHHHHHH-----------hch-------------hhhCCHHHHH
Confidence            3579999999999999999999999999999999988665432           221             12222 3668


Q ss_pred             CCccEEEEcccCCHHHHHHHHHH--HHHhCCCCcEE-EEcCC--CCcHHHHHhhcCC
Q psy9056         298 KNADMVIEAVFEDINIKHQVIKE--IEAVVPPHCVV-ATNTS--AIPITKIAAASKR  349 (359)
Q Consensus       298 ~~aD~Vi~avp~~~~~k~~v~~~--l~~~~~~~~ii-~s~ts--~~~~~~l~~~~~~  349 (359)
                      ++||+||.++|.+.+++..++..  +...++++... +..|+  .-...++++....
T Consensus        90 e~sDvvitmv~~~~~v~~v~~g~~Gvl~g~~~g~~~~vDmSTidp~~s~ei~~~i~~  146 (327)
T KOG0409|consen   90 EDSDVVITMVPNPKDVKDVLLGKSGVLSGIRPGKKATVDMSTIDPDTSLEIAKAISN  146 (327)
T ss_pred             hhcCEEEEEcCChHhhHHHhcCCCcceeeccCCCceEEeccccCHHHHHHHHHHHHh
Confidence            99999999999888877766643  33334454433 33222  2223466665543

>PLN02353 probable UDP-glucose 6-dehydrogenase

Probab=98.86  E-value=7.3e-09  Score=103.88  Aligned_cols=106  Identities=20%  Similarity=0.191  Sum_probs=78.9

Q ss_pred             ccEEEEECCCcchHHHHHHHHHCC--CeeEEecCCHHHHHHHHHHH----HHhHHHHHhhccCChHHHHhhhcccccccC
Q psy9056         220 VKTVAVLGAGLMGAGIAHVTVDKG--YNTIVKDSFEKGLARGLGQI----KTGLDGAVKRKKMSALDRDRYLASLVGTLS  293 (359)
Q Consensus       220 ~~kI~IIG~G~mG~~iA~~l~~~G--~~V~l~d~~~~~l~~~~~~~----~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~  293 (359)
                      |++|+|||+|++|..+|..|+.+|  ++|+++|.++++++.+.+..    +..++..+...         .-.++.++++
T Consensus         1 ~m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~~~~~e~gl~ell~~~---------~~~~l~~t~~   71 (473)
T PLN02353          1 MVKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSDQLPIYEPGLDEVVKQC---------RGKNLFFSTD   71 (473)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcCCCccCCCCHHHHHHHh---------hcCCEEEEcC
Confidence            468999999999999999999985  78999999999988865432    11111111110         1125888898


Q ss_pred             c-CCCCCccEEEEcccCC-------------HHHHHHHHHHHHHhCCCCcEEEEc
Q psy9056         294 Y-DPFKNADMVIEAVFED-------------INIKHQVIKEIEAVVPPHCVVATN  334 (359)
Q Consensus       294 ~-~~l~~aD~Vi~avp~~-------------~~~k~~v~~~l~~~~~~~~ii~s~  334 (359)
                      + +++++||++|+|||..             ......+.++|.++++++++|+.-
T Consensus        72 ~~~~i~~advi~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv~~  126 (473)
T PLN02353         72 VEKHVAEADIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEK  126 (473)
T ss_pred             HHHHHhcCCEEEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEEEe
Confidence            7 4689999999999633             336778889999999998877643

>PRK15059 tartronate semialdehyde reductase; Provisional

Probab=98.85  E-value=7.7e-09  Score=97.86  Aligned_cols=93  Identities=13%  Similarity=0.103  Sum_probs=66.2

Q ss_pred             EEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CCCCCc
Q psy9056         222 TVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DPFKNA  300 (359)
Q Consensus       222 kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~l~~a  300 (359)
                      +|+|||.|+||.+|+..|.++|++|++||+++. .+..           ...|             .....+. +.++.+
T Consensus         2 ~Ig~IGlG~MG~~ma~~L~~~G~~v~v~~~~~~-~~~~-----------~~~g-------------~~~~~s~~~~~~~a   56 (292)
T PRK15059          2 KLGFIGLGIMGTPMAINLARAGHQLHVTTIGPV-ADEL-----------LSLG-------------AVSVETARQVTEAS   56 (292)
T ss_pred             eEEEEccCHHHHHHHHHHHHCCCeEEEEeCCHh-HHHH-----------HHcC-------------CeecCCHHHHHhcC
Confidence            799999999999999999999999999999874 2221           1111             1122222 457899


Q ss_pred             cEEEEcccCCHHHHHHHHH--HHHHhCCCCcEEEEcCCCCc
Q psy9056         301 DMVIEAVFEDINIKHQVIK--EIEAVVPPHCVVATNTSAIP  339 (359)
Q Consensus       301 D~Vi~avp~~~~~k~~v~~--~l~~~~~~~~ii~s~ts~~~  339 (359)
                      |+||.|+|++..+...++.  .+...+.++++|+..++.-+
T Consensus        57 dvVi~~v~~~~~v~~v~~~~~g~~~~~~~g~ivvd~sT~~p   97 (292)
T PRK15059         57 DIIFIMVPDTPQVEEVLFGENGCTKASLKGKTIVDMSSISP   97 (292)
T ss_pred             CEEEEeCCChHHHHHHHcCCcchhccCCCCCEEEECCCCCH
Confidence            9999999988765554443  25556778888876655443

>cd07014 S49_SppA Signal peptide peptidase A

Probab=98.84  E-value=3e-09  Score=93.28  Aligned_cols=80  Identities=16%  Similarity=0.074  Sum_probs=65.9

Q ss_pred             CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHh--------HHhhhcC--hHHHHHHHhcCCCCCHHHH
Q psy9056           1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQ--------RLPKLTA--LPNVLDMTLTGKTLKADKA   70 (359)
Q Consensus         1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~--------~l~~~~g--~~~a~~~~ltg~~~~a~eA   70 (359)
                      |.|.|||+.|+++||+++++++  ++|+++.+..+..+......        .+++..|  ....++++..|..+++++|
T Consensus        80 G~a~g~g~~la~a~D~i~a~~~--a~~~~~G~~~~~~~~~~~l~~~~~~~~~~v~~~rg~~~~~~~~~l~~g~~~~a~~A  157 (177)
T cd07014          80 GNAASGGYWISTPANYIVANPS--TLVGSIGIFGVQLADQLSIENGYKRFITLVADNRHSTPEQQIDKIAQGGVWTGQDA  157 (177)
T ss_pred             CchhHHHHHHHHhCCEEEECCC--CeEEEechHhhHHHHHHHHHHHHHHHHHHHHHhCCCCHHHhHHHhcCcCeEeHHHH
Confidence            5789999999999999999988  99999988777433322222        4445555  6778899999999999999


Q ss_pred             HHcCCcceecCC
Q psy9056          71 KKMGIVDQLVEP   82 (359)
Q Consensus        71 ~~~Glv~~~~~~   82 (359)
                      ++.||||++.+.
T Consensus       158 ~~~GLVD~v~~~  169 (177)
T cd07014         158 KANGLVDSLGSF  169 (177)
T ss_pred             HHcCCcccCCCH
Confidence            999999999987

Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is an intramembrane enzyme found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be ClpP-like serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain, cleaving peptide bonds in the plane of the lipid bilayer. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal p

>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional

Probab=98.82  E-value=2e-08  Score=106.71  Aligned_cols=116  Identities=19%  Similarity=0.246  Sum_probs=84.4

Q ss_pred             CccEEEEECCCcchHHHHHHHHHCC--CeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-C
Q psy9056         219 PVKTVAVLGAGLMGAGIAHVTVDKG--YNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-D  295 (359)
Q Consensus       219 ~~~kI~IIG~G~mG~~iA~~l~~~G--~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~  295 (359)
                      ++++|+|||+|.||.+++..+.++|  ++|++||+++++++.+.+           .+..           ....++. +
T Consensus         2 ~~~~I~IIG~G~mG~ala~~l~~~G~~~~V~~~d~~~~~~~~a~~-----------~g~~-----------~~~~~~~~~   59 (735)
T PRK14806          2 LFGRVVVIGLGLIGGSFAKALRERGLAREVVAVDRRAKSLELAVS-----------LGVI-----------DRGEEDLAE   59 (735)
T ss_pred             CCcEEEEEeeCHHHHHHHHHHHhcCCCCEEEEEECChhHHHHHHH-----------CCCC-----------CcccCCHHH
Confidence            3589999999999999999999999  489999999887655321           1110           0112233 4


Q ss_pred             CCCCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCC--CcHHHHHhhcCC-CCcEEeecC
Q psy9056         296 PFKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSA--IPITKIAAASKR-PDKVRNMGR  358 (359)
Q Consensus       296 ~l~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~--~~~~~l~~~~~~-~~rvig~h~  358 (359)
                      .++++|+||+|+|.+  ....+++++.++++++++|.+.++.  ..++.+.+.+.. ..|+++.|+
T Consensus        60 ~~~~aDvVilavp~~--~~~~vl~~l~~~~~~~~ii~d~~svk~~~~~~l~~~~~~~~~r~~~~hP  123 (735)
T PRK14806         60 AVSGADVIVLAVPVL--AMEKVLADLKPLLSEHAIVTDVGSTKGNVVDAARAVFGELPAGFVPGHP  123 (735)
T ss_pred             HhcCCCEEEECCCHH--HHHHHHHHHHHhcCCCcEEEEcCCCchHHHHHHHHhccccCCeEEecCC
Confidence            578999999999865  4789999999998888877655442  225666666543 468888887

>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional

Probab=98.82  E-value=2.7e-08  Score=95.99  Aligned_cols=108  Identities=12%  Similarity=0.132  Sum_probs=72.4

Q ss_pred             chHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CCCCCccEEEEcccC
Q psy9056         231 MGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DPFKNADMVIEAVFE  309 (359)
Q Consensus       231 mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~l~~aD~Vi~avp~  309 (359)
                      =|.+||..|+++||+|++||++++.++...      ++.....             .+.++++. +.+.++|+||+|+|.
T Consensus        31 gG~~MA~~La~aG~~V~v~Dr~~~~l~~~~------~~~l~~~-------------Gi~~asd~~eaa~~ADvVIlaVP~   91 (342)
T PRK12557         31 GGSRMAIEFAEAGHDVVLAEPNRSILSEEL------WKKVEDA-------------GVKVVSDDAEAAKHGEIHILFTPF   91 (342)
T ss_pred             CHHHHHHHHHhCCCeEEEEECCHHHhhHHH------HHHHHHC-------------CCEEeCCHHHHHhCCCEEEEECCC
Confidence            489999999999999999999998654311      1111111             23444444 567899999999997


Q ss_pred             CHHHHHHHHHHHHHhCCCCcEEEEcCCCCcH---HHHHhhcCCCCcEEeecC
Q psy9056         310 DINIKHQVIKEIEAVVPPHCVVATNTSAIPI---TKIAAASKRPDKVRNMGR  358 (359)
Q Consensus       310 ~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~---~~l~~~~~~~~rvig~h~  358 (359)
                      +. ..+.++..+.+.++++++|++.+++.+.   ..+.+.+..+.+.+|.|+
T Consensus        92 ~~-~v~~Vl~~L~~~L~~g~IVId~ST~~~~~~s~~l~~~l~~~~~~~gi~~  142 (342)
T PRK12557         92 GK-KTVEIAKNILPHLPENAVICNTCTVSPVVLYYSLEGELRTKRKDVGISS  142 (342)
T ss_pred             cH-HHHHHHHHHHhhCCCCCEEEEecCCCHHHHHHHHHHHhcccccccCeee
Confidence            65 4667888999999999988866654333   234455543334444443

>PRK05479 ketol-acid reductoisomerase; Provisional

Probab=98.82  E-value=1e-08  Score=97.88  Aligned_cols=110  Identities=17%  Similarity=0.103  Sum_probs=80.0

Q ss_pred             ccEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcCCCCC
Q psy9056         220 VKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPFKN  299 (359)
Q Consensus       220 ~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~  299 (359)
                      -++|+|||.|+||.++|..|..+|++|++++++..+......          +.             .+...+..+.++.
T Consensus        17 gktIgIIG~GsmG~AlA~~L~~sG~~Vvv~~r~~~~s~~~A~----------~~-------------G~~~~s~~eaa~~   73 (330)
T PRK05479         17 GKKVAIIGYGSQGHAHALNLRDSGVDVVVGLREGSKSWKKAE----------AD-------------GFEVLTVAEAAKW   73 (330)
T ss_pred             CCEEEEEeeHHHHHHHHHHHHHCCCEEEEEECCchhhHHHHH----------HC-------------CCeeCCHHHHHhc
Confidence            378999999999999999999999999998877543222110          01             1222222256889


Q ss_pred             ccEEEEcccCCHHHHHHHH-HHHHHhCCCCcEEEEcCCCCcHHHHHhhcCCCCcEEe
Q psy9056         300 ADMVIEAVFEDINIKHQVI-KEIEAVVPPHCVVATNTSAIPITKIAAASKRPDKVRN  355 (359)
Q Consensus       300 aD~Vi~avp~~~~~k~~v~-~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~rvig  355 (359)
                      ||+|++++|.+..  ..++ +++.++++++++| +.+.|+.+.......+...+++-
T Consensus        74 ADVVvLaVPd~~~--~~V~~~~I~~~Lk~g~iL-~~a~G~~i~~~~~~p~~~~~Vi~  127 (330)
T PRK05479         74 ADVIMILLPDEVQ--AEVYEEEIEPNLKEGAAL-AFAHGFNIHFGQIVPPADVDVIM  127 (330)
T ss_pred             CCEEEEcCCHHHH--HHHHHHHHHhcCCCCCEE-EECCCCChhhceeccCCCCcEEE
Confidence            9999999996663  6777 7799999999988 88889888877665544444443

>PLN02712 arogenate dehydrogenase

Probab=98.80  E-value=2.7e-08  Score=103.89  Aligned_cols=112  Identities=10%  Similarity=0.065  Sum_probs=79.7

Q ss_pred             ccEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcCC-C-
Q psy9056         220 VKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDP-F-  297 (359)
Q Consensus       220 ~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-l-  297 (359)
                      .++|+|||.|.||.++|..+.+.|++|++||++... +.+.           +.             .+...++.+. + 
T Consensus        52 ~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~~~-~~A~-----------~~-------------Gv~~~~d~~e~~~  106 (667)
T PLN02712         52 QLKIAIIGFGNYGQFLAKTLISQGHTVLAHSRSDHS-LAAR-----------SL-------------GVSFFLDPHDLCE  106 (667)
T ss_pred             CCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHH-HHHH-----------Hc-------------CCEEeCCHHHHhh
Confidence            358999999999999999999999999999998543 1111           00             1222334422 3 


Q ss_pred             CCccEEEEcccCCHHHHHHHHHHHH-HhCCCCcEEEEcCCCCc--HHHHHhhcCCCCcEEeecC
Q psy9056         298 KNADMVIEAVFEDINIKHQVIKEIE-AVVPPHCVVATNTSAIP--ITKIAAASKRPDKVRNMGR  358 (359)
Q Consensus       298 ~~aD~Vi~avp~~~~~k~~v~~~l~-~~~~~~~ii~s~ts~~~--~~~l~~~~~~~~rvig~h~  358 (359)
                      .++|+||+|+|.+  ....+++++. ++++++++|++.+|...  ...+...++...+++++|+
T Consensus       107 ~~aDvViLavP~~--~~~~vl~~l~~~~l~~g~iVvDv~SvK~~~~~~l~~~l~~~~~~v~~HP  168 (667)
T PLN02712        107 RHPDVILLCTSII--STENVLKSLPLQRLKRNTLFVDVLSVKEFAKNLLLDYLPEDFDIICSHP  168 (667)
T ss_pred             cCCCEEEEcCCHH--HHHHHHHhhhhhcCCCCeEEEECCCCcHHHHHHHHHhcCCCCeEEeeCC
Confidence            5699999999854  4678888876 66888999887765432  3445555554457999997

>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases

Probab=98.80  E-value=1.6e-08  Score=96.38  Aligned_cols=122  Identities=17%  Similarity=0.215  Sum_probs=83.5

Q ss_pred             cEEEEECCCcchHHHHHHHHHCC--CeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcCCCC
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKG--YNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPFK  298 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G--~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~  298 (359)
                      +||+|||+|.+|.++|..++..|  ++|+++|+++++++.....+++.....   +.          .....+.+++++.
T Consensus         1 ~kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~---~~----------~~~i~~~~~~~l~   67 (306)
T cd05291           1 RKVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFL---PS----------PVKIKAGDYSDCK   67 (306)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhcc---CC----------CeEEEcCCHHHhC
Confidence            48999999999999999999999  589999999988777665554332110   00          0011234566789


Q ss_pred             CccEEEEcccC--------------CHHHHHHHHHHHHHhCCCCcEEEEcCCC--CcHHHHHhhcCC-CCcEEee
Q psy9056         299 NADMVIEAVFE--------------DINIKHQVIKEIEAVVPPHCVVATNTSA--IPITKIAAASKR-PDKVRNM  356 (359)
Q Consensus       299 ~aD~Vi~avp~--------------~~~~k~~v~~~l~~~~~~~~ii~s~ts~--~~~~~l~~~~~~-~~rvig~  356 (359)
                      +||+||.++..              +..+.+++.+.+.++.+ +.+++..++.  +....+....+. ++|++|+
T Consensus        68 ~aDIVIitag~~~~~g~~R~dll~~N~~i~~~~~~~i~~~~~-~~~vivvsNP~d~~~~~~~~~~g~p~~~v~g~  141 (306)
T cd05291          68 DADIVVITAGAPQKPGETRLDLLEKNAKIMKSIVPKIKASGF-DGIFLVASNPVDVITYVVQKLSGLPKNRVIGT  141 (306)
T ss_pred             CCCEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCC-CeEEEEecChHHHHHHHHHHHhCcCHHHEeec
Confidence            99999998854              34466778888999876 5555544443  333444454444 4788875

L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine

>PRK12921 2-dehydropantoate 2-reductase; Provisional

Probab=98.80  E-value=4.7e-08  Score=92.79  Aligned_cols=119  Identities=18%  Similarity=0.143  Sum_probs=80.3

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcC-CCCC
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYD-PFKN  299 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~l~~  299 (359)
                      +||+|||+|.||..+|..|+++|++|++|++ +++++...+.   .+.  ....  . .  .... .....++.+ ....
T Consensus         1 mkI~IiG~G~iG~~~a~~L~~~g~~V~~~~r-~~~~~~~~~~---g~~--~~~~--~-~--~~~~-~~~~~~~~~~~~~~   68 (305)
T PRK12921          1 MRIAVVGAGAVGGTFGGRLLEAGRDVTFLVR-PKRAKALRER---GLV--IRSD--H-G--DAVV-PGPVITDPEELTGP   68 (305)
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCCceEEEec-HHHHHHHHhC---CeE--EEeC--C-C--eEEe-cceeecCHHHccCC
Confidence            3799999999999999999999999999999 7766654321   000  0000  0 0  0000 111234443 3588


Q ss_pred             ccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCcHH-HHHhhcCCCCcEE
Q psy9056         300 ADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPIT-KIAAASKRPDKVR  354 (359)
Q Consensus       300 aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~-~l~~~~~~~~rvi  354 (359)
                      +|+||+|++...  ...+++++.+++.++++|++.+.|+... .+.+.++ +.+++
T Consensus        69 ~d~vilavk~~~--~~~~~~~l~~~~~~~~~ii~~~nG~~~~~~l~~~~~-~~~v~  121 (305)
T PRK12921         69 FDLVILAVKAYQ--LDAAIPDLKPLVGEDTVIIPLQNGIGQLEQLEPYFG-RERVL  121 (305)
T ss_pred             CCEEEEEecccC--HHHHHHHHHhhcCCCCEEEEeeCCCChHHHHHHhCC-cccEE
Confidence            999999998765  5688899999888889888888888754 5555553 33444

>TIGR00465 ilvC ketol-acid reductoisomerase

Probab=98.78  E-value=2.1e-08  Score=95.65  Aligned_cols=108  Identities=18%  Similarity=0.189  Sum_probs=77.2

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCCeeEEecCC-HHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcCCCCC
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSF-EKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPFKN  299 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~-~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~  299 (359)
                      ++|+|||+|+||.++|..|..+|++|+++++. ++..+.+.           +.             .+...+..+.+++
T Consensus         4 kkIgiIG~G~mG~AiA~~L~~sG~~Viv~~~~~~~~~~~a~-----------~~-------------Gv~~~s~~ea~~~   59 (314)
T TIGR00465         4 KTVAIIGYGSQGHAQALNLRDSGLNVIVGLRKGGASWKKAT-----------ED-------------GFKVGTVEEAIPQ   59 (314)
T ss_pred             CEEEEEeEcHHHHHHHHHHHHCCCeEEEEECcChhhHHHHH-----------HC-------------CCEECCHHHHHhc
Confidence            68999999999999999999999998776544 33333221           11             1222222255789


Q ss_pred             ccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCcHHHHHhhcCCCCcEE
Q psy9056         300 ADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPITKIAAASKRPDKVR  354 (359)
Q Consensus       300 aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~rvi  354 (359)
                      +|+|+.++|.+.. ...+.+++.++++++. ++|...|+++..+...++...+++
T Consensus        60 ADiVvLaVpp~~~-~~~v~~ei~~~l~~g~-iVs~aaG~~i~~~~~~~~~~~~Vv  112 (314)
T TIGR00465        60 ADLIMNLLPDEVQ-HEVYEAEIQPLLKEGK-TLGFSHGFNIHFVQIVPPKDVDVV  112 (314)
T ss_pred             CCEEEEeCCcHhH-HHHHHHHHHhhCCCCc-EEEEeCCccHhhccccCCCCCcEE
Confidence            9999999996633 5566777888888776 668999999998887775443443

This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway

>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases

Probab=98.75  E-value=3e-08  Score=94.62  Aligned_cols=122  Identities=18%  Similarity=0.206  Sum_probs=83.9

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCC--eeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcCCCC
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGY--NTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPFK  298 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~--~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~  298 (359)
                      .||+|||+|.+|.++|..++..|.  +++|+|++++.++....++++.....             ....+..++++++++
T Consensus         4 ~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~-------------~~~~v~~~~dy~~~~   70 (312)
T cd05293           4 NKVTVVGVGQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAFL-------------KNPKIEADKDYSVTA   70 (312)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhccC-------------CCCEEEECCCHHHhC
Confidence            499999999999999999999987  79999999887666555555432100             012455567888899


Q ss_pred             CccEEEEcccC--------------CHHHHHHHHHHHHHhCCCCcEEEEcCC--CCcHHHHHhhcCC-CCcEEee
Q psy9056         299 NADMVIEAVFE--------------DINIKHQVIKEIEAVVPPHCVVATNTS--AIPITKIAAASKR-PDKVRNM  356 (359)
Q Consensus       299 ~aD~Vi~avp~--------------~~~~k~~v~~~l~~~~~~~~ii~s~ts--~~~~~~l~~~~~~-~~rvig~  356 (359)
                      +||+||++.-.              +..+.+++.+.|.++.+ +.+++..++  .+....+....+. +.|++|+
T Consensus        71 ~adivvitaG~~~k~g~~R~dll~~N~~i~~~~~~~i~~~~p-~~~vivvsNP~d~~t~~~~k~sg~p~~~viG~  144 (312)
T cd05293          71 NSKVVIVTAGARQNEGESRLDLVQRNVDIFKGIIPKLVKYSP-NAILLVVSNPVDIMTYVAWKLSGLPKHRVIGS  144 (312)
T ss_pred             CCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCC-CcEEEEccChHHHHHHHHHHHhCCCHHHEEec
Confidence            99999996521              33356677788999965 454444444  4434455555554 4788886

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PLN02602 lactate dehydrogenase

Probab=98.74  E-value=3.9e-08  Score=95.00  Aligned_cols=122  Identities=16%  Similarity=0.238  Sum_probs=84.0

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCC--eeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcCCCC
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGY--NTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPFK  298 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~--~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~  298 (359)
                      +||+|||+|.+|+++|..++..|.  ++.|+|++++.++....++++... +.  +         . ..+..++++++++
T Consensus        38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~~~~-~~--~---------~-~~i~~~~dy~~~~  104 (350)
T PLN02602         38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHAAA-FL--P---------R-TKILASTDYAVTA  104 (350)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHhhhh-cC--C---------C-CEEEeCCCHHHhC
Confidence            599999999999999999999987  799999999877766555554321 00  0         0 1344445788899


Q ss_pred             CccEEEEcccC--------------CHHHHHHHHHHHHHhCCCCcEEE--EcCCCCcHHHHHhhcCCC-CcEEee
Q psy9056         299 NADMVIEAVFE--------------DINIKHQVIKEIEAVVPPHCVVA--TNTSAIPITKIAAASKRP-DKVRNM  356 (359)
Q Consensus       299 ~aD~Vi~avp~--------------~~~~k~~v~~~l~~~~~~~~ii~--s~ts~~~~~~l~~~~~~~-~rvig~  356 (359)
                      +||+||++.-.              +..+.+++.+.|.+++++ .+++  ||...+....+....+.| .||+|+
T Consensus       105 daDiVVitAG~~~k~g~tR~dll~~N~~I~~~i~~~I~~~~p~-~ivivvtNPvdv~t~~~~k~sg~p~~rviG~  178 (350)
T PLN02602        105 GSDLCIVTAGARQIPGESRLNLLQRNVALFRKIIPELAKYSPD-TILLIVSNPVDVLTYVAWKLSGFPANRVIGS  178 (350)
T ss_pred             CCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCC-eEEEEecCchHHHHHHHHHHhCCCHHHEEee
Confidence            99999997521              334566777888888655 4444  444444445555555544 788875

>PRK06249 2-dehydropantoate 2-reductase; Provisional

Probab=98.70  E-value=6e-08  Score=92.70  Aligned_cols=122  Identities=11%  Similarity=0.124  Sum_probs=81.6

Q ss_pred             CccEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcCCCC
Q psy9056         219 PVKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPFK  298 (359)
Q Consensus       219 ~~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~  298 (359)
                      ..++|+|||+|.||+.+|..|+++|++|+++.+++.  +..... ...+..  ..+.       .........++.+...
T Consensus         4 ~~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~~--~~~~~~-g~~~~~--~~~~-------~~~~~~~~~~~~~~~~   71 (313)
T PRK06249          4 ETPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSDY--EAVREN-GLQVDS--VHGD-------FHLPPVQAYRSAEDMP   71 (313)
T ss_pred             cCcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCH--HHHHhC-CeEEEe--CCCC-------eeecCceEEcchhhcC
Confidence            335899999999999999999999999999999863  221110 000000  0000       0001122333445567


Q ss_pred             CccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCcHH-HHHhhcCCCCcEEe
Q psy9056         299 NADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPIT-KIAAASKRPDKVRN  355 (359)
Q Consensus       299 ~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~-~l~~~~~~~~rvig  355 (359)
                      .+|+||+|++...  ..++++.+.+.+.++++|++..+|+... .+.+.++ ++++++
T Consensus        72 ~~D~vilavK~~~--~~~~~~~l~~~~~~~~~iv~lqNG~~~~e~l~~~~~-~~~v~~  126 (313)
T PRK06249         72 PCDWVLVGLKTTA--NALLAPLIPQVAAPDAKVLLLQNGLGVEEQLREILP-AEHLLG  126 (313)
T ss_pred             CCCEEEEEecCCC--hHhHHHHHhhhcCCCCEEEEecCCCCcHHHHHHHCC-CCcEEE
Confidence            8999999998766  3578888999998999999999998875 4555554 445554

>PRK12480 D-lactate dehydrogenase; Provisional

Probab=98.70  E-value=1.3e-07  Score=90.90  Aligned_cols=100  Identities=22%  Similarity=0.218  Sum_probs=77.4

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CCCCC
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DPFKN  299 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~l~~  299 (359)
                      ++|+|||.|.||.++|..+...|++|++||++++.....                            +...+++ +.+++
T Consensus       147 ~~VgIIG~G~IG~~vA~~L~~~G~~V~~~d~~~~~~~~~----------------------------~~~~~~l~ell~~  198 (330)
T PRK12480        147 MTVAIIGTGRIGAATAKIYAGFGATITAYDAYPNKDLDF----------------------------LTYKDSVKEAIKD  198 (330)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEeCChhHhhhh----------------------------hhccCCHHHHHhc
Confidence            589999999999999999999999999999997532110                            1122334 46799


Q ss_pred             ccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCcH--HHHHhhcC
Q psy9056         300 ADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPI--TKIAAASK  348 (359)
Q Consensus       300 aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~--~~l~~~~~  348 (359)
                      ||+|++++|.+.+....+.+.+.+.++++++|++.+.|.-+  ..+.+.+.
T Consensus       199 aDiVil~lP~t~~t~~li~~~~l~~mk~gavlIN~aRG~~vd~~aL~~aL~  249 (330)
T PRK12480        199 ADIISLHVPANKESYHLFDKAMFDHVKKGAILVNAARGAVINTPDLIAAVN  249 (330)
T ss_pred             CCEEEEeCCCcHHHHHHHhHHHHhcCCCCcEEEEcCCccccCHHHHHHHHH
Confidence            99999999999887777777888889999999887776444  45555554

>cd07016 S14_ClpP_1 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease

Probab=98.69  E-value=3e-08  Score=85.41  Aligned_cols=77  Identities=16%  Similarity=0.125  Sum_probs=62.9

Q ss_pred             CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcc---------------hHhHHhhhcC--hHHHHHHHhcCC
Q psy9056           1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAG---------------GTQRLPKLTA--LPNVLDMTLTGK   63 (359)
Q Consensus         1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g---------------~~~~l~~~~g--~~~a~~~~ltg~   63 (359)
                      |.|.|+|+.|+++||+|+++++  ++|++++...|..+...               ....+.+..|  .....+++.++.
T Consensus        67 g~a~s~g~~ia~a~d~~~~~~~--a~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~~i~~~~~~~~  144 (160)
T cd07016          67 GLAASAASVIAMAGDEVEMPPN--AMLMIHNPSTGAAGNADDLRKAADLLDKIDESIANAYAEKTGLSEEEISALMDAET  144 (160)
T ss_pred             chHHhHHHHHHhcCCeEEECCC--cEEEEECCccccCcCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhCCe
Confidence            5688999999999999999988  99999887766544332               2334777788  577778888888


Q ss_pred             CCCHHHHHHcCCccee
Q psy9056          64 TLKADKAKKMGIVDQL   79 (359)
Q Consensus        64 ~~~a~eA~~~Glv~~~   79 (359)
                      .++++||+++||+|++
T Consensus       145 ~l~a~eA~~~GliD~v  160 (160)
T cd07016         145 WLTAQEAVELGFADEI  160 (160)
T ss_pred             ECcHHHHHHcCCCCcC
Confidence            9999999999999975

Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. This subfamily only contains bacterial sequences. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which a

>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases

Probab=98.69  E-value=4.7e-08  Score=93.25  Aligned_cols=120  Identities=20%  Similarity=0.218  Sum_probs=80.4

Q ss_pred             EEEEECCCcchHHHHHHHHHCC--CeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcCCCCC
Q psy9056         222 TVAVLGAGLMGAGIAHVTVDKG--YNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPFKN  299 (359)
Q Consensus       222 kI~IIG~G~mG~~iA~~l~~~G--~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~  299 (359)
                      ||+|||+|.+|.++|..++.+|  .+|.++|+++++.+.....+.+.... .     .        .....+++++++++
T Consensus         2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~~~~-~-----~--------~~~i~~~d~~~l~~   67 (308)
T cd05292           2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGTPF-V-----K--------PVRIYAGDYADCKG   67 (308)
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHccccc-c-----C--------CeEEeeCCHHHhCC
Confidence            7999999999999999999999  58999999988765433333321100 0     0        01223567788999


Q ss_pred             ccEEEEcccC--------------CHHHHHHHHHHHHHhCCCCcEEEEcCC--CCcHHHHHhhcCC-CCcEEee
Q psy9056         300 ADMVIEAVFE--------------DINIKHQVIKEIEAVVPPHCVVATNTS--AIPITKIAAASKR-PDKVRNM  356 (359)
Q Consensus       300 aD~Vi~avp~--------------~~~~k~~v~~~l~~~~~~~~ii~s~ts--~~~~~~l~~~~~~-~~rvig~  356 (359)
                      ||+||++++.              +..+.+++.+.|.++.+++. ++..++  .+....+....+. +.|++|+
T Consensus        68 aDiViita~~~~~~~~~r~dl~~~n~~i~~~~~~~l~~~~~~gi-iiv~tNP~d~~~~~~~~~sg~p~~~viG~  140 (308)
T cd05292          68 ADVVVITAGANQKPGETRLDLLKRNVAIFKEIIPQILKYAPDAI-LLVVTNPVDVLTYVAYKLSGLPPNRVIGS  140 (308)
T ss_pred             CCEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeE-EEEecCcHHHHHHHHHHHHCcCHHHeecc
Confidence            9999999975              44466777888888876544 433333  3333444455444 4678875

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PTZ00431 pyrroline carboxylate reductase; Provisional

Probab=98.69  E-value=6.4e-08  Score=90.09  Aligned_cols=104  Identities=18%  Similarity=0.210  Sum_probs=77.6

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCC----eeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-C
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGY----NTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-D  295 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~----~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~  295 (359)
                      .||+|||+|+||++++..+.++|.    +|+++|+++++..                              .....+. +
T Consensus         4 mkI~iIG~G~mG~ai~~~l~~~~~~~~~~i~~~~~~~~~~~------------------------------~~~~~~~~~   53 (260)
T PTZ00431          4 IRVGFIGLGKMGSALAYGIENSNIIGKENIYYHTPSKKNTP------------------------------FVYLQSNEE   53 (260)
T ss_pred             CEEEEECccHHHHHHHHHHHhCCCCCcceEEEECCChhcCC------------------------------eEEeCChHH
Confidence            379999999999999999999873    4999998875310                              0112222 3


Q ss_pred             CCCCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCcHHHHHhhcCCCC---cEEeec
Q psy9056         296 PFKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPITKIAAASKRPD---KVRNMG  357 (359)
Q Consensus       296 ~l~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~---rvig~h  357 (359)
                      .+.++|+||+|+|.+  ..+++++++.+++++ .+|+|..+|++.+.+...++...   |+++.|
T Consensus        54 ~~~~~D~Vilavkp~--~~~~vl~~i~~~l~~-~~iIS~~aGi~~~~l~~~~~~~~~vvr~mPn~  115 (260)
T PTZ00431         54 LAKTCDIIVLAVKPD--LAGKVLLEIKPYLGS-KLLISICGGLNLKTLEEMVGVEAKIVRVMPNT  115 (260)
T ss_pred             HHHhCCEEEEEeCHH--HHHHHHHHHHhhccC-CEEEEEeCCccHHHHHHHcCCCCeEEEECCCc
Confidence            467899999999644  478999999888765 56689999999999998876432   444444

>cd00300 LDH_like L-lactate dehydrogenase-like enzymes

Probab=98.67  E-value=4.7e-08  Score=92.87  Aligned_cols=120  Identities=18%  Similarity=0.227  Sum_probs=84.4

Q ss_pred             EEEECCCcchHHHHHHHHHCC--CeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcCCCCCc
Q psy9056         223 VAVLGAGLMGAGIAHVTVDKG--YNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPFKNA  300 (359)
Q Consensus       223 I~IIG~G~mG~~iA~~l~~~G--~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~a  300 (359)
                      |+|||+|.+|+++|..++..|  .+++++|+++++++....++.+.....   .          ..++..+++++++++|
T Consensus         1 i~iiGaG~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~~~---~----------~~~i~~~~~~~~l~~a   67 (300)
T cd00300           1 ITIIGAGNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFL---A----------TGTIVRGGDYADAADA   67 (300)
T ss_pred             CEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhcccc---C----------CCeEEECCCHHHhCCC
Confidence            689999999999999999999  589999999988777666555433210   0          0134445667899999


Q ss_pred             cEEEEcccC--------------CHHHHHHHHHHHHHhCCCCcEEEEcCCC--CcHHHHHhhcCC-CCcEEee
Q psy9056         301 DMVIEAVFE--------------DINIKHQVIKEIEAVVPPHCVVATNTSA--IPITKIAAASKR-PDKVRNM  356 (359)
Q Consensus       301 D~Vi~avp~--------------~~~~k~~v~~~l~~~~~~~~ii~s~ts~--~~~~~l~~~~~~-~~rvig~  356 (359)
                      |+||+++..              +..+.+++.+.|.+++ ++.+++..++.  +....+....+. +.|++|+
T Consensus        68 DiVIitag~p~~~~~~R~~l~~~n~~i~~~~~~~i~~~~-p~~~viv~sNP~d~~~~~~~~~sg~~~~kviG~  139 (300)
T cd00300          68 DIVVITAGAPRKPGETRLDLINRNAPILRSVITNLKKYG-PDAIILVVSNPVDILTYVAQKLSGLPKNRVIGS  139 (300)
T ss_pred             CEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEccChHHHHHHHHHHHhCcCHHHEEec
Confidence            999998843              3446777888899988 55655544443  333445455443 4788886

Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot

>PLN02858 fructose-bisphosphate aldolase

Probab=98.66  E-value=7.8e-08  Score=107.46  Aligned_cols=103  Identities=10%  Similarity=0.080  Sum_probs=75.6

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CCCCC
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DPFKN  299 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~l~~  299 (359)
                      ++||+||.|.||.+||..|+++||+|++||+++++.+....           .|             ....++. +.+++
T Consensus         5 ~~IGfIGLG~MG~~mA~~L~~~G~~v~v~dr~~~~~~~l~~-----------~G-------------a~~~~s~~e~a~~   60 (1378)
T PLN02858          5 GVVGFVGLDSLSFELASSLLRSGFKVQAFEISTPLMEKFCE-----------LG-------------GHRCDSPAEAAKD   60 (1378)
T ss_pred             CeEEEEchhHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHH-----------cC-------------CeecCCHHHHHhc
Confidence            68999999999999999999999999999999988765432           12             1223333 56788


Q ss_pred             ccEEEEcccCCHHHHHHHH--HHHHHhCCCCcEEEEcCCCCcH--HHHHhhc
Q psy9056         300 ADMVIEAVFEDINIKHQVI--KEIEAVVPPHCVVATNTSAIPI--TKIAAAS  347 (359)
Q Consensus       300 aD~Vi~avp~~~~~k~~v~--~~l~~~~~~~~ii~s~ts~~~~--~~l~~~~  347 (359)
                      ||+||.|+|++..+...++  ..+.+.+.++.+|+..|+.-+-  .++++.+
T Consensus        61 advVi~~l~~~~~v~~V~~g~~g~~~~l~~g~iivd~STi~p~~~~~la~~l  112 (1378)
T PLN02858         61 AAALVVVLSHPDQVDDVFFGDEGAAKGLQKGAVILIRSTILPLQLQKLEKKL  112 (1378)
T ss_pred             CCEEEEEcCChHHHHHHHhchhhHHhcCCCcCEEEECCCCCHHHHHHHHHHH
Confidence            9999999998877654444  4577778888888766543322  2444444

>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases

Probab=98.66  E-value=5.9e-08  Score=92.31  Aligned_cols=122  Identities=17%  Similarity=0.226  Sum_probs=82.4

Q ss_pred             EEEEECCCcchHHHHHHHHHCCC--eeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcCCCCC
Q psy9056         222 TVAVLGAGLMGAGIAHVTVDKGY--NTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPFKN  299 (359)
Q Consensus       222 kI~IIG~G~mG~~iA~~l~~~G~--~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~  299 (359)
                      ||+|||+|.+|.++|..++..|.  +++|+|++++.++....++.+..... ....          -+++ +++++++++
T Consensus         1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~~~~~-~~~~----------~~i~-~~~y~~~~~   68 (307)
T cd05290           1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHATALT-YSTN----------TKIR-AGDYDDCAD   68 (307)
T ss_pred             CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhhhccC-CCCC----------EEEE-ECCHHHhCC
Confidence            69999999999999999999987  79999999887666555554322100 0000          0233 467889999


Q ss_pred             ccEEEEcccC----------------CHHHHHHHHHHHHHhCCCCcEEEEcCCC--CcHHHHHhhcCC-CCcEEee
Q psy9056         300 ADMVIEAVFE----------------DINIKHQVIKEIEAVVPPHCVVATNTSA--IPITKIAAASKR-PDKVRNM  356 (359)
Q Consensus       300 aD~Vi~avp~----------------~~~~k~~v~~~l~~~~~~~~ii~s~ts~--~~~~~l~~~~~~-~~rvig~  356 (359)
                      ||+||++.-.                +..+.+++.+.+.++. ++.+++..|+.  +....+.+..+. +.|++|+
T Consensus        69 aDivvitaG~~~kpg~tr~R~dll~~N~~I~~~i~~~i~~~~-p~~i~ivvsNPvDv~t~~~~k~sg~p~~rviG~  143 (307)
T cd05290          69 ADIIVITAGPSIDPGNTDDRLDLAQTNAKIIREIMGNITKVT-KEAVIILITNPLDIAVYIAATEFDYPANKVIGT  143 (307)
T ss_pred             CCEEEECCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEecCcHHHHHHHHHHHhCcChhheecc
Confidence            9999987621                2335666777888887 45655544444  444555566664 4788886

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]

Probab=98.65  E-value=8.4e-08  Score=90.57  Aligned_cols=123  Identities=23%  Similarity=0.275  Sum_probs=82.5

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCC--eeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcCCCC
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGY--NTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPFK  298 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~--~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~  298 (359)
                      +||+|||+|.+|+++|..++..++  ++.++|++++..+.-..++.+.....            ....++..+.++++++
T Consensus         1 ~KVaviGaG~VG~s~a~~l~~~~~~~el~LiDi~~~~~~G~a~DL~~~~~~~------------~~~~~i~~~~~y~~~~   68 (313)
T COG0039           1 MKVAVIGAGNVGSSLAFLLLLQGLGSELVLIDINEEKAEGVALDLSHAAAPL------------GSDVKITGDGDYEDLK   68 (313)
T ss_pred             CeEEEECCChHHHHHHHHHhcccccceEEEEEcccccccchhcchhhcchhc------------cCceEEecCCChhhhc
Confidence            489999999999999999988765  89999999665444333333221100            0001223324489999


Q ss_pred             CccEEEEcc--c------------CCHHHHHHHHHHHHHhCCCCcEEE--EcCCCCcHHHHHhhcCCC-CcEEee
Q psy9056         299 NADMVIEAV--F------------EDINIKHQVIKEIEAVVPPHCVVA--TNTSAIPITKIAAASKRP-DKVRNM  356 (359)
Q Consensus       299 ~aD~Vi~av--p------------~~~~~k~~v~~~l~~~~~~~~ii~--s~ts~~~~~~l~~~~~~~-~rvig~  356 (359)
                      ++|+|+++.  |            .|..+.+++.+++.++++ +.+++  ||...+....+.+..+.| +|++|+
T Consensus        69 ~aDiVvitAG~prKpGmtR~DLl~~Na~I~~~i~~~i~~~~~-d~ivlVvtNPvD~~ty~~~k~sg~p~~rvig~  142 (313)
T COG0039          69 GADIVVITAGVPRKPGMTRLDLLEKNAKIVKDIAKAIAKYAP-DAIVLVVTNPVDILTYIAMKFSGFPKNRVIGS  142 (313)
T ss_pred             CCCEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHhhCC-CeEEEEecCcHHHHHHHHHHhcCCCccceecc
Confidence            999999977  3            256678888899999987 55444  444444455666666644 787774

>PRK00066 ldh L-lactate dehydrogenase; Reviewed

Probab=98.65  E-value=7e-08  Score=92.26  Aligned_cols=121  Identities=16%  Similarity=0.192  Sum_probs=83.0

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCC--eeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcCCCC
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGY--NTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPFK  298 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~--~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~  298 (359)
                      +||+|||+|.+|.++|..++..|+  ++.++|++++.++....++.+..... . .           ..+. ++++++++
T Consensus         7 ~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~-~-~-----------~~i~-~~~~~~~~   72 (315)
T PRK00066          7 NKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFT-S-P-----------TKIY-AGDYSDCK   72 (315)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhcccc-C-C-----------eEEE-eCCHHHhC
Confidence            599999999999999999999998  89999999988777666665443111 0 0           1233 46678899


Q ss_pred             CccEEEEcccC--------------CHHHHHHHHHHHHHhCCCCcEEEEcCCC--CcHHHHHhhcCC-CCcEEee
Q psy9056         299 NADMVIEAVFE--------------DINIKHQVIKEIEAVVPPHCVVATNTSA--IPITKIAAASKR-PDKVRNM  356 (359)
Q Consensus       299 ~aD~Vi~avp~--------------~~~~k~~v~~~l~~~~~~~~ii~s~ts~--~~~~~l~~~~~~-~~rvig~  356 (359)
                      +||+||++.-.              +..+.+++...+.++.+ +.+++..++.  +....+....+. +.|++|+
T Consensus        73 ~adivIitag~~~k~g~~R~dll~~N~~i~~~i~~~i~~~~~-~~~vivvsNP~d~~~~~~~k~sg~p~~~viG~  146 (315)
T PRK00066         73 DADLVVITAGAPQKPGETRLDLVEKNLKIFKSIVGEVMASGF-DGIFLVASNPVDILTYATWKLSGFPKERVIGS  146 (315)
T ss_pred             CCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCC-CeEEEEccCcHHHHHHHHHHHhCCCHHHEeec
Confidence            99999986622              44466777788888865 5555444443  333444444443 4678775

>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein

Probab=98.64  E-value=2.7e-07  Score=86.69  Aligned_cols=93  Identities=10%  Similarity=0.088  Sum_probs=64.0

Q ss_pred             chHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CCCCCccEEEEcccC
Q psy9056         231 MGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DPFKNADMVIEAVFE  309 (359)
Q Consensus       231 mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~l~~aD~Vi~avp~  309 (359)
                      =|.+||..|+++||+|++||++++..+...      ++...+.|             ...+++. +.++++|+||.|+|.
T Consensus        31 gGspMArnLlkAGheV~V~Drnrsa~e~e~------~e~LaeaG-------------A~~AaS~aEAAa~ADVVIL~LPd   91 (341)
T TIGR01724        31 GGSRMAIEFAMAGHDVVLAEPNREFMSDDL------WKKVEDAG-------------VKVVSDDKEAAKHGEIHVLFTPF   91 (341)
T ss_pred             CHHHHHHHHHHCCCEEEEEeCChhhhhhhh------hHHHHHCC-------------CeecCCHHHHHhCCCEEEEecCC
Confidence            489999999999999999999987653211      01111222             2333443 678999999999995


Q ss_pred             CHHHHHHHHHHHHHhCCCCcEEEEcCCCCcHHHHH
Q psy9056         310 DINIKHQVIKEIEAVVPPHCVVATNTSAIPITKIA  344 (359)
Q Consensus       310 ~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~l~  344 (359)
                      ... .++++..+.+.++++++|+.+| ++++..+.
T Consensus        92 ~aa-V~eVl~GLaa~L~~GaIVID~S-TIsP~t~~  124 (341)
T TIGR01724        92 GKG-TFSIARTIIEHVPENAVICNTC-TVSPVVLY  124 (341)
T ss_pred             HHH-HHHHHHHHHhcCCCCCEEEECC-CCCHHHHH
Confidence            554 4566678888899999887554 44444433

This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.

>KOG1495|consensus

Probab=98.59  E-value=2.4e-07  Score=84.26  Aligned_cols=124  Identities=19%  Similarity=0.259  Sum_probs=90.7

Q ss_pred             CccEEEEECCCcchHHHHHHHHHCCC--eeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcCC
Q psy9056         219 PVKTVAVLGAGLMGAGIAHVTVDKGY--NTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDP  296 (359)
Q Consensus       219 ~~~kI~IIG~G~mG~~iA~~l~~~G~--~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  296 (359)
                      +..||.|+|.|.+|.++|..++.+|.  ++.++|.++++++....++++....             -...++....|+..
T Consensus        19 ~~~KItVVG~G~VGmAca~siL~k~Ladel~lvDv~~dklkGE~MDLqH~s~f-------------~~~~~V~~~~Dy~~   85 (332)
T KOG1495|consen   19 KHNKITVVGVGQVGMACAISILLKGLADELVLVDVNEDKLKGEMMDLQHGSAF-------------LSTPNVVASKDYSV   85 (332)
T ss_pred             cCceEEEEccchHHHHHHHHHHHhhhhhceEEEecCcchhhhhhhhhcccccc-------------ccCCceEecCcccc
Confidence            36899999999999999999999997  8999999999887765555432211             11235777888999


Q ss_pred             CCCccEEEEccc--------------CCHHHHHHHHHHHHHhCCCCcEEEEcCC--CCcHHHHHhhcCCC-CcEEee
Q psy9056         297 FKNADMVIEAVF--------------EDINIKHQVIKEIEAVVPPHCVVATNTS--AIPITKIAAASKRP-DKVRNM  356 (359)
Q Consensus       297 l~~aD~Vi~avp--------------~~~~~k~~v~~~l~~~~~~~~ii~s~ts--~~~~~~l~~~~~~~-~rvig~  356 (359)
                      .+++++||+..-              .+.++++.++.++.+|. |+++++..+.  .+.........+.| .|+||.
T Consensus        86 sa~S~lvIiTAGarq~~gesRL~lvQrNV~ifK~iip~lv~yS-pd~~llvvSNPVDilTYv~wKLSgfP~nRViGs  161 (332)
T KOG1495|consen   86 SANSKLVIITAGARQSEGESRLDLVQRNVDIFKAIIPALVKYS-PDCILLVVSNPVDILTYVTWKLSGFPKNRVIGS  161 (332)
T ss_pred             cCCCcEEEEecCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhcC-CCeEEEEecCchHHHHHHHHHHcCCcccceecc
Confidence            999999998652              24557777778888884 6676554444  44445666666766 788873

>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1

Probab=98.59  E-value=1.7e-07  Score=79.55  Aligned_cols=118  Identities=17%  Similarity=0.162  Sum_probs=78.0

Q ss_pred             EEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CCCCCcc
Q psy9056         223 VAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DPFKNAD  301 (359)
Q Consensus       223 I~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~l~~aD  301 (359)
                      |.|+|+|.||.-+|..|.+.|++|.++++++ .++...+.-       .   .+.....+..........+. +.....|
T Consensus         1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~-~~~~~~~~g-------~---~~~~~~~~~~~~~~~~~~~~~~~~~~~D   69 (151)
T PF02558_consen    1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP-RLEAIKEQG-------L---TITGPDGDETVQPPIVISAPSADAGPYD   69 (151)
T ss_dssp             EEEESTSHHHHHHHHHHHHTTCEEEEEESHH-HHHHHHHHC-------E---EEEETTEEEEEEEEEEESSHGHHHSTES
T ss_pred             CEEECcCHHHHHHHHHHHHCCCceEEEEccc-cHHhhhhee-------E---EEEecccceecccccccCcchhccCCCc
Confidence            7899999999999999999999999999998 666533210       0   00000000000000001111 2357899


Q ss_pred             EEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCcHH-HHHhhcCCCCcEE
Q psy9056         302 MVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPIT-KIAAASKRPDKVR  354 (359)
Q Consensus       302 ~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~-~l~~~~~~~~rvi  354 (359)
                      +||+|+....  .+.+++.+.+++.+++.|++..+|+... .+.+.++. .+++
T Consensus        70 ~viv~vKa~~--~~~~l~~l~~~~~~~t~iv~~qNG~g~~~~l~~~~~~-~~v~  120 (151)
T PF02558_consen   70 LVIVAVKAYQ--LEQALQSLKPYLDPNTTIVSLQNGMGNEEVLAEYFPR-PRVL  120 (151)
T ss_dssp             EEEE-SSGGG--HHHHHHHHCTGEETTEEEEEESSSSSHHHHHHCHSTG-SGEE
T ss_pred             EEEEEecccc--hHHHHHHHhhccCCCcEEEEEeCCCCcHHHHHHHcCC-CcEE
Confidence            9999996655  5688999999999999999999998865 55555543 3544

1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....

>PRK05708 2-dehydropantoate 2-reductase; Provisional

Probab=98.56  E-value=5.3e-07  Score=85.93  Aligned_cols=121  Identities=14%  Similarity=0.036  Sum_probs=81.3

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcCCCCCc
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPFKNA  300 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~a  300 (359)
                      +||+|+|+|.||+-+|..|+++|++|++++++.++++...+.-.-.+.   ..+..       ..-.... .+.+.....
T Consensus         3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~~~~~~i~~~~Gl~i~---~~g~~-------~~~~~~~-~~~~~~~~~   71 (305)
T PRK05708          3 MTWHILGAGSLGSLWACRLARAGLPVRLILRDRQRLAAYQQAGGLTLV---EQGQA-------SLYAIPA-ETADAAEPI   71 (305)
T ss_pred             ceEEEECCCHHHHHHHHHHHhCCCCeEEEEechHHHHHHhhcCCeEEe---eCCcc-------eeeccCC-CCccccccc
Confidence            379999999999999999999999999999998776655431000000   00100       0000111 111234678


Q ss_pred             cEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCcHH-HHHhhcCCCCcEEe
Q psy9056         301 DMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPIT-KIAAASKRPDKVRN  355 (359)
Q Consensus       301 D~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~-~l~~~~~~~~rvig  355 (359)
                      |+||+|+-  .....++++++.+++++++.|++..+|+... .+.+.++ .+++++
T Consensus        72 D~viv~vK--~~~~~~al~~l~~~l~~~t~vv~lQNGv~~~e~l~~~~~-~~~v~~  124 (305)
T PRK05708         72 HRLLLACK--AYDAEPAVASLAHRLAPGAELLLLQNGLGSQDAVAARVP-HARCIF  124 (305)
T ss_pred             CEEEEECC--HHhHHHHHHHHHhhCCCCCEEEEEeCCCCCHHHHHHhCC-CCcEEE
Confidence            99999994  3335578899999999999999999998875 4555554 344543

>PRK15076 alpha-galactosidase; Provisional

Probab=98.54  E-value=3.8e-07  Score=90.71  Aligned_cols=123  Identities=14%  Similarity=0.119  Sum_probs=82.3

Q ss_pred             ccEEEEECCCcchHHHHH--HHH----HCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccC
Q psy9056         220 VKTVAVLGAGLMGAGIAH--VTV----DKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLS  293 (359)
Q Consensus       220 ~~kI~IIG~G~mG~~iA~--~l~----~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~  293 (359)
                      |.||+|||+|+||.+.+.  .++    ..|.+|+++|+++++++.....+++.+...   +         ..-+++.++|
T Consensus         1 ~~KIaIIGaGsvg~~~~~~~~i~~~~~l~~~evvLvDid~er~~~~~~l~~~~~~~~---~---------~~~~i~~ttD   68 (431)
T PRK15076          1 MPKITFIGAGSTVFTKNLLGDILSVPALRDAEIALMDIDPERLEESEIVARKLAESL---G---------ASAKITATTD   68 (431)
T ss_pred             CcEEEEECCCHHHhHHHHHHHHhhCccCCCCEEEEECCCHHHHHHHHHHHHHHHHhc---C---------CCeEEEEECC
Confidence            469999999999977666  443    235699999999999886555454443322   1         0125677888


Q ss_pred             c-CCCCCccEEEEcccCC----H---------------------------------HHHHHHHHHHHHhCCCCcEEEEcC
Q psy9056         294 Y-DPFKNADMVIEAVFED----I---------------------------------NIKHQVIKEIEAVVPPHCVVATNT  335 (359)
Q Consensus       294 ~-~~l~~aD~Vi~avp~~----~---------------------------------~~k~~v~~~l~~~~~~~~ii~s~t  335 (359)
                      . +++++||+||+++-..    .                                 .+.+++.+.|.+++ |+.+|+..|
T Consensus        69 ~~eal~dADfVv~ti~vg~~~~~~~~De~Iplk~G~~~~r~et~G~GG~~~~~r~i~~i~~i~~~i~~~~-p~a~iin~t  147 (431)
T PRK15076         69 RREALQGADYVINAIQVGGYEPCTVTDFEIPKKYGLRQTIGDTLGIGGIMRALRTIPVLLDICEDMEEVC-PDALLLNYV  147 (431)
T ss_pred             HHHHhCCCCEEeEeeeeCCcchhhhhhhhhHHHcCCeeecccCcCccchhhhhhhHHHHHHHHHHHHHHC-CCeEEEEcC
Confidence            4 8899999999877321    1                                 14556778888887 567777666


Q ss_pred             CCCcH-HHHHhhcCCCCcEEee
Q psy9056         336 SAIPI-TKIAAASKRPDKVRNM  356 (359)
Q Consensus       336 s~~~~-~~l~~~~~~~~rvig~  356 (359)
                      +...+ +.....+ .+.|+||+
T Consensus       148 NP~divt~~~~~~-~~~rviG~  168 (431)
T PRK15076        148 NPMAMNTWAMNRY-PGIKTVGL  168 (431)
T ss_pred             ChHHHHHHHHhcC-CCCCEEEE
Confidence            65533 3333333 35789986

>PLN02858 fructose-bisphosphate aldolase

Probab=98.53  E-value=2.9e-07  Score=102.99  Aligned_cols=96  Identities=18%  Similarity=0.285  Sum_probs=71.3

Q ss_pred             CccEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CCC
Q psy9056         219 PVKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DPF  297 (359)
Q Consensus       219 ~~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~l  297 (359)
                      .+++|||||.|+||.+||..|+++|++|++||+++++.+....           .|             ....++. +.+
T Consensus       323 ~~~~IGfIGlG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~-----------~G-------------a~~~~s~~e~~  378 (1378)
T PLN02858        323 PVKRIGFIGLGAMGFGMASHLLKSNFSVCGYDVYKPTLVRFEN-----------AG-------------GLAGNSPAEVA  378 (1378)
T ss_pred             CCCeEEEECchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH-----------cC-------------CeecCCHHHHH
Confidence            3589999999999999999999999999999999987665321           11             1112233 567


Q ss_pred             CCccEEEEcccCCHHHHHHHH--HHHHHhCCCCcEEEEcCCCC
Q psy9056         298 KNADMVIEAVFEDINIKHQVI--KEIEAVVPPHCVVATNTSAI  338 (359)
Q Consensus       298 ~~aD~Vi~avp~~~~~k~~v~--~~l~~~~~~~~ii~s~ts~~  338 (359)
                      ++||+||.|+|++..+...++  ..+.+.+.++.+++..|+.-
T Consensus       379 ~~aDvVi~~V~~~~~v~~Vl~g~~g~~~~l~~g~ivVd~STvs  421 (1378)
T PLN02858        379 KDVDVLVIMVANEVQAENVLFGDLGAVSALPAGASIVLSSTVS  421 (1378)
T ss_pred             hcCCEEEEecCChHHHHHHHhchhhHHhcCCCCCEEEECCCCC
Confidence            899999999997776544443  34666778888887665543

>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2

Probab=98.53  E-value=4e-07  Score=81.35  Aligned_cols=106  Identities=21%  Similarity=0.236  Sum_probs=69.7

Q ss_pred             CccEEEEECCCcchHHHHHHHHHCCC-eeEEecCC---HHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc
Q psy9056         219 PVKTVAVLGAGLMGAGIAHVTVDKGY-NTIVKDSF---EKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY  294 (359)
Q Consensus       219 ~~~kI~IIG~G~mG~~iA~~l~~~G~-~V~l~d~~---~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~  294 (359)
                      .-.+|+|+|+|.+|+.+|..+++.|+ +|+++|.+   ++.+.... ...    .  ..|+.........+.++....+.
T Consensus        20 ~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~-~~~----~--~iG~~Ka~~~~~~l~~inp~~~i   92 (200)
T TIGR02354        20 EQATVAICGLGGLGSNVAINLARAGIGKLILVDFDVVEPSNLNRQQ-YKA----S--QVGEPKTEALKENISEINPYTEI   92 (200)
T ss_pred             hCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCCEEccccccccc-CCh----h--hCCCHHHHHHHHHHHHHCCCCEE
Confidence            33789999999999999999999999 79999999   55544311 000    0  11111111122222222221111


Q ss_pred             -------------CCCCCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEE
Q psy9056         295 -------------DPFKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVA  332 (359)
Q Consensus       295 -------------~~l~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~  332 (359)
                                   +.+.++|+||+| .++...+..+++.+....+...++.
T Consensus        93 ~~~~~~i~~~~~~~~~~~~DlVi~a-~Dn~~~k~~l~~~~~~~~~~~~ii~  142 (200)
T TIGR02354        93 EAYDEKITEENIDKFFKDADIVCEA-FDNAEAKAMLVNAVLEKYKDKYLIA  142 (200)
T ss_pred             EEeeeeCCHhHHHHHhcCCCEEEEC-CCCHHHHHHHHHHHHHHcCCCcEEE
Confidence                         136789999999 6898888888999888877666665

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.

>KOG2711|consensus

Probab=98.52  E-value=1.6e-07  Score=88.21  Aligned_cols=117  Identities=15%  Similarity=0.162  Sum_probs=82.5

Q ss_pred             CCCCCCccEEEEECCCcchHHHHHHHHHC--C-----CeeEEecCCHHHHH---HHHHHHH--HhHHHHHhhccCChHHH
Q psy9056         214 GKPQTPVKTVAVLGAGLMGAGIAHVTVDK--G-----YNTIVKDSFEKGLA---RGLGQIK--TGLDGAVKRKKMSALDR  281 (359)
Q Consensus       214 ~~~~~~~~kI~IIG~G~mG~~iA~~l~~~--G-----~~V~l~d~~~~~l~---~~~~~~~--~~l~~~~~~~~~~~~~~  281 (359)
                      +...+.-.||+|||+|+||++||..+..+  +     .+|.+|-...+.-.   ...+-|+  +.--++++..+      
T Consensus        15 ~~~~~~~~kV~ivGsGnWGsaiaki~~~n~~~~~~f~~~Vrmwv~ee~i~~~~~~L~eiIN~~heN~KYlpg~~------   88 (372)
T KOG2711|consen   15 GKAERDPLKVCIVGSGNWGSAIAKIVGENVKEFPIFDPQVRMWVFEEEINGEAEKLTEIINSRHENVKYLPGIK------   88 (372)
T ss_pred             CchhcCceEEEEEccChHHHHHHHHHhhhhhhccccCceeeEEEeccccCChhHHHHHHhccccccccccCCcc------
Confidence            33445567999999999999999988775  2     26888855443222   2222222  11112333322      


Q ss_pred             HhhhcccccccCc-CCCCCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCcH
Q psy9056         282 DRYLASLVGTLSY-DPFKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPI  340 (359)
Q Consensus       282 ~~~~~~i~~~~~~-~~l~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~  340 (359)
                        ...++..++|+ +++.++|++|..+|.+.  ...++++|..+.+++...+|.+.|+..
T Consensus        89 --lP~NvvAv~dl~ea~~dADilvf~vPhQf--~~~ic~~l~g~vk~~~~aISL~KG~e~  144 (372)
T KOG2711|consen   89 --LPENVVAVPDLVEAAKDADILVFVVPHQF--IPRICEQLKGYVKPGATAISLIKGVEV  144 (372)
T ss_pred             --CCCCeEecchHHHHhccCCEEEEeCChhh--HHHHHHHHhcccCCCCeEEEeecceec
Confidence              33578888888 78899999999999766  679999999999999999998887664

>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity

Probab=98.46  E-value=3.5e-07  Score=87.27  Aligned_cols=123  Identities=17%  Similarity=0.157  Sum_probs=81.5

Q ss_pred             cEEEEECC-CcchHHHHHHHHHCCC--eeEEecCCH--HHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcC
Q psy9056         221 KTVAVLGA-GLMGAGIAHVTVDKGY--NTIVKDSFE--KGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYD  295 (359)
Q Consensus       221 ~kI~IIG~-G~mG~~iA~~l~~~G~--~V~l~d~~~--~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~  295 (359)
                      +||+|+|+ |.+|..++..++..|+  +|+++|+++  ++++.....+.+.+.   ..+         ...++.++++++
T Consensus         1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~~~~~~l~~~~~dl~d~~~---~~~---------~~~~i~~~~d~~   68 (309)
T cd05294           1 MKVSIIGASGRVGSATALLLAKEDVVKEINLISRPKSLEKLKGLRLDIYDALA---AAG---------IDAEIKISSDLS   68 (309)
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEECcccccccccccchhhhchh---ccC---------CCcEEEECCCHH
Confidence            48999998 9999999999999997  499999965  444433333332111   111         001355566787


Q ss_pred             CCCCccEEEEcccC------C--------HHHHHHHHHHHHHhCCCCcEEEEcCCCCcH--HHHHhhcCC-CCcEEee
Q psy9056         296 PFKNADMVIEAVFE------D--------INIKHQVIKEIEAVVPPHCVVATNTSAIPI--TKIAAASKR-PDKVRNM  356 (359)
Q Consensus       296 ~l~~aD~Vi~avp~------~--------~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~--~~l~~~~~~-~~rvig~  356 (359)
                      ++.+||+||.++..      +        ..+.+.+.+.|.++++ +.+|+..++..++  ..+....+. +.|++|+
T Consensus        69 ~l~~aDiViitag~p~~~~~~r~dl~~~n~~i~~~~~~~i~~~~~-~~~viv~~npvd~~t~~~~~~~g~~~~~viG~  145 (309)
T cd05294          69 DVAGSDIVIITAGVPRKEGMSRLDLAKKNAKIVKKYAKQIAEFAP-DTKILVVTNPVDVMTYKALKESGFDKNRVFGL  145 (309)
T ss_pred             HhCCCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC-CeEEEEeCCchHHHHHHHHHhcCCCHHHEeec
Confidence            89999999998841      1        1456677778888875 6666666665554  345555554 4788886

The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox

>TIGR01759 MalateDH-SF1 malate dehydrogenase

Probab=98.45  E-value=7.4e-07  Score=85.38  Aligned_cols=122  Identities=19%  Similarity=0.109  Sum_probs=83.8

Q ss_pred             cEEEEECC-CcchHHHHHHHHHCCC-------eeEEecCCH--HHHHHHHHHHHHhHHHHHhhccCChHHHHhhhccccc
Q psy9056         221 KTVAVLGA-GLMGAGIAHVTVDKGY-------NTIVKDSFE--KGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVG  290 (359)
Q Consensus       221 ~kI~IIG~-G~mG~~iA~~l~~~G~-------~V~l~d~~~--~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~  290 (359)
                      -||+|||+ |.+|.++|..+...|+       +++|+|+++  ++++....++.+.....              ..+.++
T Consensus         4 ~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~--------------~~~~~i   69 (323)
T TIGR01759         4 VRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPL--------------LAGVVA   69 (323)
T ss_pred             eEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCCcccccchHHHHHhhccccc--------------cCCcEE
Confidence            48999998 9999999999999886       899999965  33444333343322100              011222


Q ss_pred             -ccCcCCCCCccEEEEcccC--------------CHHHHHHHHHHHHHhCCCCcEEEEcCCCCc--HHHHHhhc-CCC-C
Q psy9056         291 -TLSYDPFKNADMVIEAVFE--------------DINIKHQVIKEIEAVVPPHCVVATNTSAIP--ITKIAAAS-KRP-D  351 (359)
Q Consensus       291 -~~~~~~l~~aD~Vi~avp~--------------~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~--~~~l~~~~-~~~-~  351 (359)
                       +++++++++||+||++.-.              +..+.+++.++|.++++++.+++..|+.+.  ..-+.+.+ +.| .
T Consensus        70 ~~~~~~~~~daDvVVitAG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNPvDv~t~v~~k~s~g~p~~  149 (323)
T TIGR01759        70 TTDPEEAFKDVDAALLVGAFPRKPGMERADLLSKNGKIFKEQGKALNKVAKKDVKVLVVGNPANTNALIASKNAPDIPPK  149 (323)
T ss_pred             ecChHHHhCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCcHHHHHHHHHHHcCCCCHH
Confidence             4567899999999986621              345677888899999876777766665544  34556666 654 7


Q ss_pred             cEEee
Q psy9056         352 KVRNM  356 (359)
Q Consensus       352 rvig~  356 (359)
                      ||+|+
T Consensus       150 rViG~  154 (323)
T TIGR01759       150 NFSAM  154 (323)
T ss_pred             HEEEe
Confidence            88886

This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.

>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]

Probab=98.45  E-value=1.2e-06  Score=83.48  Aligned_cols=121  Identities=16%  Similarity=0.179  Sum_probs=84.1

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcCCCCCc
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPFKNA  300 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~a  300 (359)
                      +||.|+|+|.||+-++..|+++|++|+++.|++. ++..++.   .+.-....+        .........++.+.+..+
T Consensus         1 mkI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~~-~~~l~~~---GL~i~~~~~--------~~~~~~~~~~~~~~~~~~   68 (307)
T COG1893           1 MKILILGAGAIGSLLGARLAKAGHDVTLLVRSRR-LEALKKK---GLRIEDEGG--------NFTTPVVAATDAEALGPA   68 (307)
T ss_pred             CeEEEECCcHHHHHHHHHHHhCCCeEEEEecHHH-HHHHHhC---CeEEecCCC--------ccccccccccChhhcCCC
Confidence            4899999999999999999999988999888875 5554432   000000000        000112223334567799


Q ss_pred             cEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCcHHHHHhhcCCCCcEEe
Q psy9056         301 DMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPITKIAAASKRPDKVRN  355 (359)
Q Consensus       301 D~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~rvig  355 (359)
                      |+||+++-...  ..++++.+.++++++++|++..+|+...+........+++++
T Consensus        69 Dlviv~vKa~q--~~~al~~l~~~~~~~t~vl~lqNG~g~~e~l~~~~~~~~il~  121 (307)
T COG1893          69 DLVIVTVKAYQ--LEEALPSLAPLLGPNTVVLFLQNGLGHEEELRKILPKETVLG  121 (307)
T ss_pred             CEEEEEecccc--HHHHHHHhhhcCCCCcEEEEEeCCCcHHHHHHHhCCcceEEE
Confidence            99999995444  678999999999999999999999998764444444444443

>PRK05442 malate dehydrogenase; Provisional

Probab=98.44  E-value=5.6e-07  Score=86.32  Aligned_cols=123  Identities=17%  Similarity=0.081  Sum_probs=83.0

Q ss_pred             ccEEEEECC-CcchHHHHHHHHHCCC-------eeEEecCCHH--HHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccc
Q psy9056         220 VKTVAVLGA-GLMGAGIAHVTVDKGY-------NTIVKDSFEK--GLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLV  289 (359)
Q Consensus       220 ~~kI~IIG~-G~mG~~iA~~l~~~G~-------~V~l~d~~~~--~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~  289 (359)
                      ..||+|||+ |.+|.++|..+...|.       +++|+|++++  +++....++.+.....              ..+..
T Consensus         4 ~~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~~~--------------~~~~~   69 (326)
T PRK05442          4 PVRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVMELDDCAFPL--------------LAGVV   69 (326)
T ss_pred             CcEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeehhhhhhhhhh--------------cCCcE
Confidence            369999998 9999999999998775       7999999653  3443333333322111              01112


Q ss_pred             c-ccCcCCCCCccEEEEccc--------------CCHHHHHHHHHHHHHhCCCCcEEEEcCCCCcH--HHHHhhc-CCC-
Q psy9056         290 G-TLSYDPFKNADMVIEAVF--------------EDINIKHQVIKEIEAVVPPHCVVATNTSAIPI--TKIAAAS-KRP-  350 (359)
Q Consensus       290 ~-~~~~~~l~~aD~Vi~avp--------------~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~--~~l~~~~-~~~-  350 (359)
                      + +++++++++||+||++.-              .+..+.+++.+.|.++.+++.+++..|+...+  .-+.... +.| 
T Consensus        70 i~~~~y~~~~daDiVVitaG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNPvDv~t~v~~k~s~g~p~  149 (326)
T PRK05442         70 ITDDPNVAFKDADVALLVGARPRGPGMERKDLLEANGAIFTAQGKALNEVAARDVKVLVVGNPANTNALIAMKNAPDLPA  149 (326)
T ss_pred             EecChHHHhCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeCCchHHHHHHHHHHcCCCCH
Confidence            2 456789999999998652              13456777888899988778877766665543  3455555 544 


Q ss_pred             CcEEee
Q psy9056         351 DKVRNM  356 (359)
Q Consensus       351 ~rvig~  356 (359)
                      +||+|+
T Consensus       150 ~rViG~  155 (326)
T PRK05442        150 ENFTAM  155 (326)
T ss_pred             HHEEee
Confidence            789886

>PRK13403 ketol-acid reductoisomerase; Provisional

Probab=98.41  E-value=8e-07  Score=84.11  Aligned_cols=86  Identities=22%  Similarity=0.215  Sum_probs=63.3

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CCCCC
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DPFKN  299 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~l~~  299 (359)
                      ++|+|||.|+||.++|..+...|++|++|++.....+.+.           ..             ..... +. +.++.
T Consensus        17 KtVGIIG~GsIG~amA~nL~d~G~~ViV~~r~~~s~~~A~-----------~~-------------G~~v~-sl~Eaak~   71 (335)
T PRK13403         17 KTVAVIGYGSQGHAQAQNLRDSGVEVVVGVRPGKSFEVAK-----------AD-------------GFEVM-SVSEAVRT   71 (335)
T ss_pred             CEEEEEeEcHHHHHHHHHHHHCcCEEEEEECcchhhHHHH-----------Hc-------------CCEEC-CHHHHHhc
Confidence            7899999999999999999999999999986533222111           00             11222 33 56899


Q ss_pred             ccEEEEcccCCHHHHHHHH-HHHHHhCCCCcEEEE
Q psy9056         300 ADMVIEAVFEDINIKHQVI-KEIEAVVPPHCVVAT  333 (359)
Q Consensus       300 aD~Vi~avp~~~~~k~~v~-~~l~~~~~~~~ii~s  333 (359)
                      ||+|+.++|...+  +.++ .++.+.++++++++-
T Consensus        72 ADVV~llLPd~~t--~~V~~~eil~~MK~GaiL~f  104 (335)
T PRK13403         72 AQVVQMLLPDEQQ--AHVYKAEVEENLREGQMLLF  104 (335)
T ss_pred             CCEEEEeCCChHH--HHHHHHHHHhcCCCCCEEEE
Confidence            9999999997443  4565 568899999997753

>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]

Probab=98.41  E-value=1.2e-06  Score=78.65  Aligned_cols=93  Identities=17%  Similarity=0.258  Sum_probs=70.8

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc----CC
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY----DP  296 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~----~~  296 (359)
                      ++|+.||.|.||..++..+.+.||+|+.||+|++..+.+...           +             .+..+++    ..
T Consensus         1 M~iGmiGLGrMG~n~v~rl~~~ghdvV~yD~n~~av~~~~~~-----------g-------------a~~a~sl~el~~~   56 (300)
T COG1023           1 MQIGMIGLGRMGANLVRRLLDGGHDVVGYDVNQTAVEELKDE-----------G-------------ATGAASLDELVAK   56 (300)
T ss_pred             CcceeeccchhhHHHHHHHHhCCCeEEEEcCCHHHHHHHHhc-----------C-------------CccccCHHHHHHh
Confidence            479999999999999999999999999999999988876542           1             1111111    34


Q ss_pred             CCCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCC
Q psy9056         297 FKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAI  338 (359)
Q Consensus       297 l~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~  338 (359)
                      +...-.|-..+|.. ++...+++++.+.+..+.+|+...++.
T Consensus        57 L~~pr~vWlMvPag-~it~~vi~~la~~L~~GDivIDGGNS~   97 (300)
T COG1023          57 LSAPRIVWLMVPAG-DITDAVIDDLAPLLSAGDIVIDGGNSN   97 (300)
T ss_pred             cCCCcEEEEEccCC-CchHHHHHHHHhhcCCCCEEEECCccc
Confidence            55667788888754 236788999999999999998866554

>PRK13243 glyoxylate reductase; Reviewed

Probab=98.39  E-value=5.3e-07  Score=86.89  Aligned_cols=103  Identities=17%  Similarity=0.177  Sum_probs=75.5

Q ss_pred             ccEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CCCC
Q psy9056         220 VKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DPFK  298 (359)
Q Consensus       220 ~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~l~  298 (359)
                      =++|+|||.|.||..+|..+...|.+|+.||+++.....            ...+             ... .++ +.++
T Consensus       150 gktvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~------------~~~~-------------~~~-~~l~ell~  203 (333)
T PRK13243        150 GKTIGIIGFGRIGQAVARRAKGFGMRILYYSRTRKPEAE------------KELG-------------AEY-RPLEELLR  203 (333)
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCChhhH------------HHcC-------------CEe-cCHHHHHh
Confidence            379999999999999999999999999999998643110            0000             111 233 4579


Q ss_pred             CccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCcH--HHHHhhcC
Q psy9056         299 NADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPI--TKIAAASK  348 (359)
Q Consensus       299 ~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~--~~l~~~~~  348 (359)
                      +||+|+.++|.+.+.+.-+-++..+.++++.+++..+.+-.+  ..+.+.+.
T Consensus       204 ~aDiV~l~lP~t~~T~~~i~~~~~~~mk~ga~lIN~aRg~~vd~~aL~~aL~  255 (333)
T PRK13243        204 ESDFVSLHVPLTKETYHMINEERLKLMKPTAILVNTARGKVVDTKALVKALK  255 (333)
T ss_pred             hCCEEEEeCCCChHHhhccCHHHHhcCCCCeEEEECcCchhcCHHHHHHHHH
Confidence            999999999988876665556777889999999877665433  45555554

>PLN00112 malate dehydrogenase (NADP); Provisional

Probab=98.39  E-value=2.9e-06  Score=84.12  Aligned_cols=122  Identities=15%  Similarity=0.111  Sum_probs=88.1

Q ss_pred             cEEEEECC-CcchHHHHHHHHHC-------CC--eeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccc-
Q psy9056         221 KTVAVLGA-GLMGAGIAHVTVDK-------GY--NTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLV-  289 (359)
Q Consensus       221 ~kI~IIG~-G~mG~~iA~~l~~~-------G~--~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~-  289 (359)
                      -||+|||+ |.+|..+|..++..       |+  +++++|++.++++....++++......              .++. 
T Consensus       101 ~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~amDL~daa~~~~--------------~~v~i  166 (444)
T PLN00112        101 INVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVAMELEDSLYPLL--------------REVSI  166 (444)
T ss_pred             eEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHHHHHHHhhhhhc--------------CceEE
Confidence            59999999 99999999999988       65  899999999998877666665432211              1233 


Q ss_pred             cccCcCCCCCccEEEEccc--------------CCHHHHHHHHHHHHHhCCCCcEEEEcCCCCcH--HHHHhhcC-CCCc
Q psy9056         290 GTLSYDPFKNADMVIEAVF--------------EDINIKHQVIKEIEAVVPPHCVVATNTSAIPI--TKIAAASK-RPDK  352 (359)
Q Consensus       290 ~~~~~~~l~~aD~Vi~avp--------------~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~--~~l~~~~~-~~~r  352 (359)
                      .+++++++++||+||++.-              .+..+.+++.+.|.++..++.+|+..++...+  ..+.+..+ .|.|
T Consensus       167 ~~~~ye~~kdaDiVVitAG~prkpG~tR~dLl~~N~~I~k~i~~~I~~~a~p~~ivIVVsNPvDv~t~v~~k~sg~~~~r  246 (444)
T PLN00112        167 GIDPYEVFQDAEWALLIGAKPRGPGMERADLLDINGQIFAEQGKALNEVASRNVKVIVVGNPCNTNALICLKNAPNIPAK  246 (444)
T ss_pred             ecCCHHHhCcCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcCCcHHHHHHHHHHHcCCCCcc
Confidence            2467789999999998662              13456777778888866677777666665443  34445554 4578


Q ss_pred             EEee
Q psy9056         353 VRNM  356 (359)
Q Consensus       353 vig~  356 (359)
                      +||.
T Consensus       247 ViGt  250 (444)
T PLN00112        247 NFHA  250 (444)
T ss_pred             eEEe
Confidence            8875

>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates

Probab=98.37  E-value=6.3e-07  Score=76.31  Aligned_cols=94  Identities=23%  Similarity=0.256  Sum_probs=63.3

Q ss_pred             ccEEEEECCCcchHHHHHHHHHCCCeeEEecCCHH-HHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcCCCC
Q psy9056         220 VKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEK-GLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPFK  298 (359)
Q Consensus       220 ~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~-~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~  298 (359)
                      -++|+|||.|+.|.+.|..|..+|++|++-.+... ..+++.           +             +.+.+.+..|+++
T Consensus         4 ~k~IAViGyGsQG~a~AlNLrDSG~~V~Vglr~~s~s~~~A~-----------~-------------~Gf~v~~~~eAv~   59 (165)
T PF07991_consen    4 GKTIAVIGYGSQGHAHALNLRDSGVNVIVGLREGSASWEKAK-----------A-------------DGFEVMSVAEAVK   59 (165)
T ss_dssp             TSEEEEES-SHHHHHHHHHHHHCC-EEEEEE-TTCHHHHHHH-----------H-------------TT-ECCEHHHHHH
T ss_pred             CCEEEEECCChHHHHHHHHHHhCCCCEEEEecCCCcCHHHHH-----------H-------------CCCeeccHHHHHh
Confidence            37999999999999999999999999999988766 333222           1             2233333336789


Q ss_pred             CccEEEEcccCCHHHHHHHH-HHHHHhCCCCcEEEEcCCCCcH
Q psy9056         299 NADMVIEAVFEDINIKHQVI-KEIEAVVPPHCVVATNTSAIPI  340 (359)
Q Consensus       299 ~aD~Vi~avp~~~~~k~~v~-~~l~~~~~~~~ii~s~ts~~~~  340 (359)
                      .+|+|+..+|+..  ..+++ ++|.++++++..++ .+.+..+
T Consensus        60 ~aDvV~~L~PD~~--q~~vy~~~I~p~l~~G~~L~-fahGfni   99 (165)
T PF07991_consen   60 KADVVMLLLPDEV--QPEVYEEEIAPNLKPGATLV-FAHGFNI   99 (165)
T ss_dssp             C-SEEEE-S-HHH--HHHHHHHHHHHHS-TT-EEE-ESSSHHH
T ss_pred             hCCEEEEeCChHH--HHHHHHHHHHhhCCCCCEEE-eCCcchh
Confidence            9999999999766  45787 78999999999875 3444443

This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.

>PRK08605 D-lactate dehydrogenase; Validated

Probab=98.37  E-value=7.1e-07  Score=86.03  Aligned_cols=99  Identities=16%  Similarity=0.174  Sum_probs=70.0

Q ss_pred             cEEEEECCCcchHHHHHHHH-HCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CCCC
Q psy9056         221 KTVAVLGAGLMGAGIAHVTV-DKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DPFK  298 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~-~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~l~  298 (359)
                      ++|+|||.|.||.++|..++ ..|.+|+.||+++.....          .                 .+...+++ +.++
T Consensus       147 ~~VgIIG~G~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~----------~-----------------~~~~~~~l~ell~  199 (332)
T PRK08605        147 LKVAVIGTGRIGLAVAKIFAKGYGSDVVAYDPFPNAKAA----------T-----------------YVDYKDTIEEAVE  199 (332)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCccHhHH----------h-----------------hccccCCHHHHHH
Confidence            58999999999999999994 468899999988653110          0                 01122344 4578


Q ss_pred             CccEEEEcccCCHHHHHHHH-HHHHHhCCCCcEEEEcCCCCcH--HHHHhhc
Q psy9056         299 NADMVIEAVFEDINIKHQVI-KEIEAVVPPHCVVATNTSAIPI--TKIAAAS  347 (359)
Q Consensus       299 ~aD~Vi~avp~~~~~k~~v~-~~l~~~~~~~~ii~s~ts~~~~--~~l~~~~  347 (359)
                      +||+|+.++|.+..... ++ ....+.++++++|++.+.|..+  ..+.+.+
T Consensus       200 ~aDvIvl~lP~t~~t~~-li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL  250 (332)
T PRK08605        200 GADIVTLHMPATKYNHY-LFNADLFKHFKKGAVFVNCARGSLVDTKALLDAL  250 (332)
T ss_pred             hCCEEEEeCCCCcchhh-hcCHHHHhcCCCCcEEEECCCCcccCHHHHHHHH
Confidence            99999999998776533 33 4566778999999887776554  3444444

>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases

Probab=98.36  E-value=9.7e-07  Score=84.59  Aligned_cols=122  Identities=18%  Similarity=0.075  Sum_probs=81.0

Q ss_pred             cEEEEECC-CcchHHHHHHHHHCCC-------eeEEecCCHHH--HHHHHHHHHHhHHHHHhhccCChHHHHhhhccccc
Q psy9056         221 KTVAVLGA-GLMGAGIAHVTVDKGY-------NTIVKDSFEKG--LARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVG  290 (359)
Q Consensus       221 ~kI~IIG~-G~mG~~iA~~l~~~G~-------~V~l~d~~~~~--l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~  290 (359)
                      .||+|||+ |.+|.++|..++..|.       +++|+|++++.  ++....++.+....              ...++.+
T Consensus         3 ~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~--------------~~~~~~i   68 (322)
T cd01338           3 VRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAFP--------------LLAEIVI   68 (322)
T ss_pred             eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehhhhhcccc--------------ccCceEE
Confidence            59999999 9999999999999887       79999996532  33333333322100              0011222


Q ss_pred             -ccCcCCCCCccEEEEcccC--------------CHHHHHHHHHHHHHhCCCCcEEEEcCCCCcH--HHHHhhcC-C-CC
Q psy9056         291 -TLSYDPFKNADMVIEAVFE--------------DINIKHQVIKEIEAVVPPHCVVATNTSAIPI--TKIAAASK-R-PD  351 (359)
Q Consensus       291 -~~~~~~l~~aD~Vi~avp~--------------~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~--~~l~~~~~-~-~~  351 (359)
                       +++++++++||+||++.-.              +..+.+++...|.++.+++.+++..|+.+.+  ..+....+ . +.
T Consensus        69 ~~~~~~~~~daDivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD~~t~~~~k~sg~~p~~  148 (322)
T cd01338          69 TDDPNVAFKDADWALLVGAKPRGPGMERADLLKANGKIFTAQGKALNDVASRDVKVLVVGNPCNTNALIAMKNAPDIPPD  148 (322)
T ss_pred             ecCcHHHhCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEecCcHHHHHHHHHHHcCCCChH
Confidence             4567899999999987621              3456777888899998657766666655443  34555552 3 47


Q ss_pred             cEEee
Q psy9056         352 KVRNM  356 (359)
Q Consensus       352 rvig~  356 (359)
                      +++|+
T Consensus       149 ~ViG~  153 (322)
T cd01338         149 NFTAM  153 (322)
T ss_pred             heEEe
Confidence            88886

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases

Probab=98.36  E-value=1.4e-06  Score=82.84  Aligned_cols=117  Identities=16%  Similarity=0.176  Sum_probs=78.4

Q ss_pred             cEEEEECC-CcchHHHHHHHHHCCC--eeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccc-c-C--
Q psy9056         221 KTVAVLGA-GLMGAGIAHVTVDKGY--NTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGT-L-S--  293 (359)
Q Consensus       221 ~kI~IIG~-G~mG~~iA~~l~~~G~--~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~-~-~--  293 (359)
                      .||+|||+ |.+|+++|..++..|+  +++++|++  +++....++++..                ..-.+... . +  
T Consensus         1 ~KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~--~a~g~alDL~~~~----------------~~~~i~~~~~~~~~   62 (310)
T cd01337           1 VKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIV--NTPGVAADLSHIN----------------TPAKVTGYLGPEEL   62 (310)
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecC--ccceeehHhHhCC----------------CcceEEEecCCCch
Confidence            38999999 9999999999999985  89999998  3332222233221                00134422 3 2  


Q ss_pred             cCCCCCccEEEEccc--------------CCHHHHHHHHHHHHHhCCCCcEEEEcCCCCcH-----H-HHHhhcCC-CCc
Q psy9056         294 YDPFKNADMVIEAVF--------------EDINIKHQVIKEIEAVVPPHCVVATNTSAIPI-----T-KIAAASKR-PDK  352 (359)
Q Consensus       294 ~~~l~~aD~Vi~avp--------------~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~-----~-~l~~~~~~-~~r  352 (359)
                      ++++++||+||++.-              .+..+.+++.+.|.++. |+.+|+..|+...+     + .+....+. ++|
T Consensus        63 y~~~~daDivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~-p~a~vivvtNPvDv~~~i~t~~~~~~s~~p~~r  141 (310)
T cd01337          63 KKALKGADVVVIPAGVPRKPGMTRDDLFNINAGIVRDLATAVAKAC-PKALILIISNPVNSTVPIAAEVLKKAGVYDPKR  141 (310)
T ss_pred             HHhcCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEccCchhhHHHHHHHHHHHhcCCCHHH
Confidence            689999999998762              24556777888899985 57776666665533     3 34445554 468


Q ss_pred             EEee
Q psy9056         353 VRNM  356 (359)
Q Consensus       353 vig~  356 (359)
                      |+|+
T Consensus       142 viG~  145 (310)
T cd01337         142 LFGV  145 (310)
T ss_pred             EEee
Confidence            9886

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase

Probab=98.35  E-value=1e-06  Score=75.00  Aligned_cols=117  Identities=15%  Similarity=0.111  Sum_probs=72.7

Q ss_pred             ccEEEEECCCcchHHHHHHHHHCC-CeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CCC
Q psy9056         220 VKTVAVLGAGLMGAGIAHVTVDKG-YNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DPF  297 (359)
Q Consensus       220 ~~kI~IIG~G~mG~~iA~~l~~~G-~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~l  297 (359)
                      -++|+|+|+|.||.+++..+.+.| ++|+++|+++++.+...+.+...       . .          ... ..+. +.+
T Consensus        19 ~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~~-------~-~----------~~~-~~~~~~~~   79 (155)
T cd01065          19 GKKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGEL-------G-I----------AIA-YLDLEELL   79 (155)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhc-------c-c----------cee-ecchhhcc
Confidence            368999999999999999999996 79999999998876654332210       0 0          011 1222 347


Q ss_pred             CCccEEEEcccCCHH-HHHHHHHHHHHhCCCCcEEEEcCCCCcHHHHHhhcC-CCCcEEeec
Q psy9056         298 KNADMVIEAVFEDIN-IKHQVIKEIEAVVPPHCVVATNTSAIPITKIAAASK-RPDKVRNMG  357 (359)
Q Consensus       298 ~~aD~Vi~avp~~~~-~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~-~~~rvig~h  357 (359)
                      .++|+||.|+|.+.. .....+.  ...+++++++++.++.-..+.+.+.+. ...+++.+|
T Consensus        80 ~~~Dvvi~~~~~~~~~~~~~~~~--~~~~~~~~~v~D~~~~~~~~~l~~~~~~~g~~~v~g~  139 (155)
T cd01065          80 AEADLIINTTPVGMKPGDELPLP--PSLLKPGGVVYDVVYNPLETPLLKEARALGAKTIDGL  139 (155)
T ss_pred             ccCCEEEeCcCCCCCCCCCCCCC--HHHcCCCCEEEEcCcCCCCCHHHHHHHHCCCceeCCH
Confidence            899999999998763 1111111  123578888876655432224433332 234566554

Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann

>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent

Probab=98.33  E-value=1.1e-06  Score=83.71  Aligned_cols=116  Identities=20%  Similarity=0.237  Sum_probs=77.7

Q ss_pred             EEEEECC-CcchHHHHHHHHHCCC--eeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhccccc-c-cC--c
Q psy9056         222 TVAVLGA-GLMGAGIAHVTVDKGY--NTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVG-T-LS--Y  294 (359)
Q Consensus       222 kI~IIG~-G~mG~~iA~~l~~~G~--~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~-~-~~--~  294 (359)
                      ||+|||+ |.+|.++|..++..|+  +++|+|+++  .+....++.+..                ...++.. + ++  +
T Consensus         1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~--a~g~a~DL~~~~----------------~~~~i~~~~~~~~~~   62 (312)
T TIGR01772         1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAG--AAGVAADLSHIP----------------TAASVKGFSGEEGLE   62 (312)
T ss_pred             CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCC--CcEEEchhhcCC----------------cCceEEEecCCCchH
Confidence            6999999 9999999999999886  899999987  221111122110                0012332 2 23  6


Q ss_pred             CCCCCccEEEEccc--------------CCHHHHHHHHHHHHHhCCCCcEEEEcCCCCc-----H-HHHHhhcCC-CCcE
Q psy9056         295 DPFKNADMVIEAVF--------------EDINIKHQVIKEIEAVVPPHCVVATNTSAIP-----I-TKIAAASKR-PDKV  353 (359)
Q Consensus       295 ~~l~~aD~Vi~avp--------------~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~-----~-~~l~~~~~~-~~rv  353 (359)
                      +++++||+||++.-              .+..+.+++.+.|.++. |+.+|+..|+...     + ..+....+. ++||
T Consensus        63 ~~~~daDivvitaG~~~~~g~~R~dll~~N~~I~~~i~~~i~~~~-p~~iiivvsNPvDv~~~i~t~~~~~~sg~p~~rV  141 (312)
T TIGR01772        63 NALKGADVVVIPAGVPRKPGMTRDDLFNVNAGIVKDLVAAVAESC-PKAMILVITNPVNSTVPIAAEVLKKKGVYDPNKL  141 (312)
T ss_pred             HHcCCCCEEEEeCCCCCCCCccHHHHHHHhHHHHHHHHHHHHHhC-CCeEEEEecCchhhHHHHHHHHHHHhcCCChHHE
Confidence            89999999998662              35567778888899985 5676666666553     2 344455554 4689


Q ss_pred             Eee
Q psy9056         354 RNM  356 (359)
Q Consensus       354 ig~  356 (359)
                      +|+
T Consensus       142 iG~  144 (312)
T TIGR01772       142 FGV  144 (312)
T ss_pred             Eee
Confidence            886

Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.

>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent

Probab=98.32  E-value=5.1e-06  Score=81.17  Aligned_cols=122  Identities=18%  Similarity=0.172  Sum_probs=85.3

Q ss_pred             cEEEEECC-CcchHHHHHHHHHCCC-------eeEEe--cCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccc-
Q psy9056         221 KTVAVLGA-GLMGAGIAHVTVDKGY-------NTIVK--DSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLV-  289 (359)
Q Consensus       221 ~kI~IIG~-G~mG~~iA~~l~~~G~-------~V~l~--d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~-  289 (359)
                      -||+|||+ |.+|.++|..++..|.       .++|+  |++.++++.....+.+.....              ..++. 
T Consensus        45 ~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~diD~~~~~a~g~a~DL~d~a~~~--------------~~~v~i  110 (387)
T TIGR01757        45 VNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGSERSKEALEGVAMELEDSLYPL--------------LREVSI  110 (387)
T ss_pred             eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEeccCccchhhhHHHHHHHHhhhhh--------------cCceEE
Confidence            59999999 9999999999999875       24445  888888777666665443111              11233 


Q ss_pred             cccCcCCCCCccEEEEcccC--------------CHHHHHHHHHHHHHhCCCCcEEEEcCCCCcH--HHHHhhcC-CCCc
Q psy9056         290 GTLSYDPFKNADMVIEAVFE--------------DINIKHQVIKEIEAVVPPHCVVATNTSAIPI--TKIAAASK-RPDK  352 (359)
Q Consensus       290 ~~~~~~~l~~aD~Vi~avp~--------------~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~--~~l~~~~~-~~~r  352 (359)
                      .+++++++++||+||++.-.              +..+.+++.+.|.++.+++.+|+..++...+  ..+....+ .|.|
T Consensus       111 ~~~~y~~~kdaDIVVitAG~prkpg~tR~dll~~N~~I~k~i~~~I~~~a~~~~iviVVsNPvDv~t~v~~k~sg~~~~r  190 (387)
T TIGR01757       111 GIDPYEVFEDADWALLIGAKPRGPGMERADLLDINGQIFADQGKALNAVASKNCKVLVVGNPCNTNALIAMKNAPNIPRK  190 (387)
T ss_pred             ecCCHHHhCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCCcHHHHHHHHHHHcCCCccc
Confidence            24567899999999986521              3456777888899988788877766665443  34555553 4578


Q ss_pred             EEee
Q psy9056         353 VRNM  356 (359)
Q Consensus       353 vig~  356 (359)
                      +||+
T Consensus       191 viG~  194 (387)
T TIGR01757       191 NFHA  194 (387)
T ss_pred             EEEe
Confidence            8874

This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.

>TIGR01771 L-LDH-NAD L-lactate dehydrogenase

Probab=98.30  E-value=1e-06  Score=83.59  Aligned_cols=118  Identities=16%  Similarity=0.194  Sum_probs=79.7

Q ss_pred             EECCCcchHHHHHHHHHCCC--eeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcCCCCCccE
Q psy9056         225 VLGAGLMGAGIAHVTVDKGY--NTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPFKNADM  302 (359)
Q Consensus       225 IIG~G~mG~~iA~~l~~~G~--~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~aD~  302 (359)
                      |||+|.+|.++|..++..++  ++.++|++++.++....++++....... .           -.+. .++++++++||+
T Consensus         1 iIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~-~-----------~~i~-~~~~~~~~daDi   67 (299)
T TIGR01771         1 IIGAGNVGSSTAFALLNQGIADEIVLIDINKDKAEGEAMDLQHAASFLPT-P-----------KKIR-SGDYSDCKDADL   67 (299)
T ss_pred             CCCcCHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHhhcccCC-C-----------eEEe-cCCHHHHCCCCE
Confidence            79999999999999999987  7999999988776665555543211000 0           0122 456789999999


Q ss_pred             EEEcccC--------------CHHHHHHHHHHHHHhCCCCcEEEEcCCC--CcHHHHHhhcCCC-CcEEee
Q psy9056         303 VIEAVFE--------------DINIKHQVIKEIEAVVPPHCVVATNTSA--IPITKIAAASKRP-DKVRNM  356 (359)
Q Consensus       303 Vi~avp~--------------~~~~k~~v~~~l~~~~~~~~ii~s~ts~--~~~~~l~~~~~~~-~rvig~  356 (359)
                      ||++.-.              +..+.+++.+.+.++. ++.+++..|+.  +....+....+.| .|++|+
T Consensus        68 vVitag~~rk~g~~R~dll~~N~~i~~~~~~~i~~~~-p~~~vivvsNP~d~~t~~~~~~sg~p~~~viG~  137 (299)
T TIGR01771        68 VVITAGAPQKPGETRLELVGRNVRIMKSIVPEVVKSG-FDGIFLVATNPVDILTYVAWKLSGFPKNRVIGS  137 (299)
T ss_pred             EEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEeCCHHHHHHHHHHHHhCCCHHHEEec
Confidence            9997632              4446677778888885 55655544443  3344555555544 678775

This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.

>PLN00106 malate dehydrogenase

Probab=98.30  E-value=2.1e-06  Score=82.23  Aligned_cols=117  Identities=19%  Similarity=0.160  Sum_probs=76.8

Q ss_pred             cEEEEECC-CcchHHHHHHHHHCCC--eeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccc-cccC---
Q psy9056         221 KTVAVLGA-GLMGAGIAHVTVDKGY--NTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLV-GTLS---  293 (359)
Q Consensus       221 ~kI~IIG~-G~mG~~iA~~l~~~G~--~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~-~~~~---  293 (359)
                      .||+|||+ |.+|..+|..++..++  +++++|+++  .+.....+.+...               . -.+. ++++   
T Consensus        19 ~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~--~~g~a~Dl~~~~~---------------~-~~i~~~~~~~d~   80 (323)
T PLN00106         19 FKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIAN--TPGVAADVSHINT---------------P-AQVRGFLGDDQL   80 (323)
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCC--CCeeEchhhhCCc---------------C-ceEEEEeCCCCH
Confidence            59999999 9999999999998776  899999987  1111111211100               0 0122 1233   


Q ss_pred             cCCCCCccEEEEcc--------------cCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCc-----HH-HHHhhcC-CCCc
Q psy9056         294 YDPFKNADMVIEAV--------------FEDINIKHQVIKEIEAVVPPHCVVATNTSAIP-----IT-KIAAASK-RPDK  352 (359)
Q Consensus       294 ~~~l~~aD~Vi~av--------------p~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~-----~~-~l~~~~~-~~~r  352 (359)
                      +++++++|+||.+.              +.+..+.+++++.+.++. ++.+|+..|+...     .+ .+....+ +|.+
T Consensus        81 ~~~l~~aDiVVitAG~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~-p~aivivvSNPvD~~~~i~t~~~~~~s~~p~~~  159 (323)
T PLN00106         81 GDALKGADLVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEAVAKHC-PNALVNIISNPVNSTVPIAAEVLKKAGVYDPKK  159 (323)
T ss_pred             HHHcCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEeCCCccccHHHHHHHHHHcCCCCcce
Confidence            47899999999865              235557777888899887 5666665555553     23 3444444 4689


Q ss_pred             EEee
Q psy9056         353 VRNM  356 (359)
Q Consensus       353 vig~  356 (359)
                      ++|+
T Consensus       160 viG~  163 (323)
T PLN00106        160 LFGV  163 (323)
T ss_pred             EEEE
Confidence            9986

>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional

Probab=98.29  E-value=3e-06  Score=80.92  Aligned_cols=103  Identities=15%  Similarity=0.166  Sum_probs=74.7

Q ss_pred             ccEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CCCC
Q psy9056         220 VKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DPFK  298 (359)
Q Consensus       220 ~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~l~  298 (359)
                      =++|+|||.|.||..+|..+...|.+|+.||++++.....                          .......++ +.++
T Consensus       136 g~tvgIvG~G~IG~~vA~~l~afG~~V~~~~~~~~~~~~~--------------------------~~~~~~~~l~e~l~  189 (312)
T PRK15469        136 DFTIGILGAGVLGSKVAQSLQTWGFPLRCWSRSRKSWPGV--------------------------QSFAGREELSAFLS  189 (312)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCCCCCc--------------------------eeecccccHHHHHh
Confidence            3799999999999999999999999999999876421100                          001111233 4579


Q ss_pred             CccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCC--CcHHHHHhhcC
Q psy9056         299 NADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSA--IPITKIAAASK  348 (359)
Q Consensus       299 ~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~--~~~~~l~~~~~  348 (359)
                      +||+|+.++|.+.+...-+-++..+.++++.+++..+-|  +.-..+.+.+.
T Consensus       190 ~aDvvv~~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~vVde~aL~~aL~  241 (312)
T PRK15469        190 QTRVLINLLPNTPETVGIINQQLLEQLPDGAYLLNLARGVHVVEDDLLAALD  241 (312)
T ss_pred             cCCEEEECCCCCHHHHHHhHHHHHhcCCCCcEEEECCCccccCHHHHHHHHh
Confidence            999999999999887666666777788999998876654  33345555554

>PLN03139 formate dehydrogenase; Provisional

Probab=98.27  E-value=2.4e-06  Score=83.57  Aligned_cols=105  Identities=16%  Similarity=0.099  Sum_probs=75.5

Q ss_pred             ccEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CCCC
Q psy9056         220 VKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DPFK  298 (359)
Q Consensus       220 ~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~l~  298 (359)
                      =++|||||.|.||..+|..+...|.+|+.||++....+...           +.             .+....++ +.++
T Consensus       199 gktVGIVG~G~IG~~vA~~L~afG~~V~~~d~~~~~~~~~~-----------~~-------------g~~~~~~l~ell~  254 (386)
T PLN03139        199 GKTVGTVGAGRIGRLLLQRLKPFNCNLLYHDRLKMDPELEK-----------ET-------------GAKFEEDLDAMLP  254 (386)
T ss_pred             CCEEEEEeecHHHHHHHHHHHHCCCEEEEECCCCcchhhHh-----------hc-------------CceecCCHHHHHh
Confidence            36899999999999999999999999999998753211100           00             12223344 4578


Q ss_pred             CccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCcH--HHHHhhcC
Q psy9056         299 NADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPI--TKIAAASK  348 (359)
Q Consensus       299 ~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~--~~l~~~~~  348 (359)
                      +||+|+.++|.+.+.+.-+-+++.+.++++.+|+..+-|-.+  ..+.+.+.
T Consensus       255 ~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~  306 (386)
T PLN03139        255 KCDVVVINTPLTEKTRGMFNKERIAKMKKGVLIVNNARGAIMDTQAVADACS  306 (386)
T ss_pred             hCCEEEEeCCCCHHHHHHhCHHHHhhCCCCeEEEECCCCchhhHHHHHHHHH
Confidence            999999999988886665556788889999999876655333  35555554

>PRK07574 formate dehydrogenase; Provisional

Probab=98.27  E-value=3.1e-06  Score=82.83  Aligned_cols=104  Identities=13%  Similarity=0.078  Sum_probs=74.1

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CCCCC
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DPFKN  299 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~l~~  299 (359)
                      ++|+|||.|.||..+|..+...|.+|+.||++....+...           ..             .+....++ +.++.
T Consensus       193 ktVGIvG~G~IG~~vA~~l~~fG~~V~~~dr~~~~~~~~~-----------~~-------------g~~~~~~l~ell~~  248 (385)
T PRK07574        193 MTVGIVGAGRIGLAVLRRLKPFDVKLHYTDRHRLPEEVEQ-----------EL-------------GLTYHVSFDSLVSV  248 (385)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCchhhHh-----------hc-------------CceecCCHHHHhhc
Confidence            6899999999999999999999999999999863211100           00             11222334 45799


Q ss_pred             ccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCcH--HHHHhhcC
Q psy9056         300 ADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPI--TKIAAASK  348 (359)
Q Consensus       300 aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~--~~l~~~~~  348 (359)
                      ||+|++++|-+.+...-+=++....++++.++++.+.+-.+  ..+.+.+.
T Consensus       249 aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~  299 (385)
T PRK07574        249 CDVVTIHCPLHPETEHLFDADVLSRMKRGSYLVNTARGKIVDRDAVVRALE  299 (385)
T ss_pred             CCEEEEcCCCCHHHHHHhCHHHHhcCCCCcEEEECCCCchhhHHHHHHHHH
Confidence            99999999988876544445677788999999876665433  35555554

>PRK06436 glycerate dehydrogenase; Provisional

Probab=98.23  E-value=3e-06  Score=80.56  Aligned_cols=100  Identities=13%  Similarity=0.073  Sum_probs=72.2

Q ss_pred             ccEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CCCC
Q psy9056         220 VKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DPFK  298 (359)
Q Consensus       220 ~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~l~  298 (359)
                      =++|||||.|.||..+|..+...|.+|+.||++... +                +.            .....++ +.++
T Consensus       122 gktvgIiG~G~IG~~vA~~l~afG~~V~~~~r~~~~-~----------------~~------------~~~~~~l~ell~  172 (303)
T PRK06436        122 NKSLGILGYGGIGRRVALLAKAFGMNIYAYTRSYVN-D----------------GI------------SSIYMEPEDIMK  172 (303)
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCcc-c----------------Cc------------ccccCCHHHHHh
Confidence            379999999999999999888889999999987421 0                00            0001233 4578


Q ss_pred             CccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCc--HHHHHhhcC
Q psy9056         299 NADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIP--ITKIAAASK  348 (359)
Q Consensus       299 ~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~--~~~l~~~~~  348 (359)
                      +||+|+.++|.+.+...-+-++..+.++++.+++..+.+-.  ...+.+.+.
T Consensus       173 ~aDiv~~~lp~t~~T~~li~~~~l~~mk~ga~lIN~sRG~~vd~~aL~~aL~  224 (303)
T PRK06436        173 KSDFVLISLPLTDETRGMINSKMLSLFRKGLAIINVARADVVDKNDMLNFLR  224 (303)
T ss_pred             hCCEEEECCCCCchhhcCcCHHHHhcCCCCeEEEECCCccccCHHHHHHHHH
Confidence            99999999998887655454667777899999887665533  345655554

>cd00704 MDH Malate dehydrogenase

Probab=98.22  E-value=1.5e-06  Score=83.27  Aligned_cols=121  Identities=17%  Similarity=0.143  Sum_probs=80.0

Q ss_pred             EEEEECC-CcchHHHHHHHHHCCC-------eeEEecCCH--HHHHHHHHHHHHhHHHHHhhccCChHHHHhhhccccc-
Q psy9056         222 TVAVLGA-GLMGAGIAHVTVDKGY-------NTIVKDSFE--KGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVG-  290 (359)
Q Consensus       222 kI~IIG~-G~mG~~iA~~l~~~G~-------~V~l~d~~~--~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~-  290 (359)
                      ||+|+|+ |.+|..++..++..|+       +++++|+++  +.++.....+.+....              ......+ 
T Consensus         2 KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~d~~~~--------------~~~~~~i~   67 (323)
T cd00704           2 HVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAFP--------------LLKGVVIT   67 (323)
T ss_pred             EEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCccCccceeeeehhhhccc--------------ccCCcEEe
Confidence            7999999 9999999999998764       599999987  5433322222221100              0111222 


Q ss_pred             ccCcCCCCCccEEEEccc--------------CCHHHHHHHHHHHHHhCCCCcEEEEcCCCCc--HHHHHhhcC--CCCc
Q psy9056         291 TLSYDPFKNADMVIEAVF--------------EDINIKHQVIKEIEAVVPPHCVVATNTSAIP--ITKIAAASK--RPDK  352 (359)
Q Consensus       291 ~~~~~~l~~aD~Vi~avp--------------~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~--~~~l~~~~~--~~~r  352 (359)
                      .++++++++||+||.+.-              .+..+.+++...|.++++++.+++..|+...  ...+....+  ++.|
T Consensus        68 ~~~~~~~~~aDiVVitAG~~~~~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD~~t~~~~k~sg~~p~~~  147 (323)
T cd00704          68 TDPEEAFKDVDVAILVGAFPRKPGMERADLLRKNAKIFKEQGEALNKVAKPTVKVLVVGNPANTNALIALKNAPNLPPKN  147 (323)
T ss_pred             cChHHHhCCCCEEEEeCCCCCCcCCcHHHHHHHhHHHHHHHHHHHHHhCCCCeEEEEeCCcHHHHHHHHHHHcCCCCHHH
Confidence            345688999999998651              1455777888889999756776665565443  345556666  3578


Q ss_pred             EEee
Q psy9056         353 VRNM  356 (359)
Q Consensus       353 vig~  356 (359)
                      |+|+
T Consensus       148 vig~  151 (323)
T cd00704         148 FTAL  151 (323)
T ss_pred             EEEe
Confidence            8876

Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type

Probab=98.16  E-value=2e-06  Score=88.67  Aligned_cols=93  Identities=22%  Similarity=0.217  Sum_probs=74.6

Q ss_pred             CCCCchHHHHHHhcCEEEEecCCceEE------eccc------cCCCCCCCcchHhHHhh--------------------
Q psy9056           1 MFAEPSLATVALACHYRIVVKDKKTGL------GLPE------VMLGLLPGAGGTQRLPK--------------------   48 (359)
Q Consensus         1 ~~a~GgG~~lalacD~ria~~~~~~~~------~~pe------~~~Gi~p~~g~~~~l~~--------------------   48 (359)
                      ++|.+||.-++++||.++|.+.  +.+      +++.      .++|+.|+...+..+..                    
T Consensus       387 g~aaSggY~iA~aaD~I~a~p~--t~~GSIGv~~~~~~~~~~l~klGi~~~~~~t~~~~~~s~~~~~t~~~~~~~~~~l~  464 (584)
T TIGR00705       387 AMAASGGYWIASAADYIVASPN--TITGSIGVFSVLPTFENSLDRIGVHVDGVSTHELANVSLLRPLTAEDQAIMQLSVE  464 (584)
T ss_pred             CccccHHHHHHHhCCEEEECCC--CeeecCEEEEEccCHHHHHHhcCCceEEEeccCcCCCCCCCCCCHHHHHHHHHHHH
Confidence            4688999999999999999987  766      6663      68999998777765543                    


Q ss_pred             --------hcChHH-----HHHHHhcCCCCCHHHHHHcCCcceecCCCCCCCCCcchhhHHHHHHHHHHHHHHHhcC
Q psy9056          49 --------LTALPN-----VLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASG  112 (359)
Q Consensus        49 --------~~g~~~-----a~~~~ltg~~~~a~eA~~~Glv~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~  112 (359)
                              .++..+     ..+.+.+|+.++++||+++||||++-.-                 +.+.+.+.+++..
T Consensus       465 ~~y~~F~~~Va~~R~l~~e~v~~ia~Grv~tg~eA~~~GLVD~ig~~-----------------~~Ai~~a~~la~~  524 (584)
T TIGR00705       465 AGYRRFLSVVSAGRNLTPTQVDKVAQGRVWTGEDAVSNGLVDALGGL-----------------DEAVAKAAKLAHC  524 (584)
T ss_pred             HHHHHHHHHHHhhCCCCHHHHHHHHhCCCcCHHHHHHcCCcccCCCH-----------------HHHHHHHHHHcCC
Confidence                    555554     7788899999999999999999999532                 4566677788776

E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.

>PTZ00325 malate dehydrogenase; Provisional

Probab=98.15  E-value=5.5e-06  Score=79.26  Aligned_cols=121  Identities=18%  Similarity=0.219  Sum_probs=75.4

Q ss_pred             CCCccEEEEECC-CcchHHHHHHHHHCC--CeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccC
Q psy9056         217 QTPVKTVAVLGA-GLMGAGIAHVTVDKG--YNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLS  293 (359)
Q Consensus       217 ~~~~~kI~IIG~-G~mG~~iA~~l~~~G--~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~  293 (359)
                      ..+|+||+|||+ |.+|+.+|..++..+  .+++++|++.  .+.-...+.+...               . -.+...++
T Consensus         5 ~~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~~--~~g~a~Dl~~~~~---------------~-~~v~~~td   66 (321)
T PTZ00325          5 ALKMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIVG--APGVAADLSHIDT---------------P-AKVTGYAD   66 (321)
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecCC--CcccccchhhcCc---------------C-ceEEEecC
Confidence            367889999999 999999999999666  4899999932  1111111221100               0 12222222


Q ss_pred             ----cCCCCCccEEEEccc--C------------CHHHHHHHHHHHHHhCCCCcEEEEcCCCCcH-HHHH-----hhcC-
Q psy9056         294 ----YDPFKNADMVIEAVF--E------------DINIKHQVIKEIEAVVPPHCVVATNTSAIPI-TKIA-----AASK-  348 (359)
Q Consensus       294 ----~~~l~~aD~Vi~avp--~------------~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~-~~l~-----~~~~-  348 (359)
                          +++++++|+||.+.-  .            +..+.+.+++.+.++ .++.+|+..|.++.+ ..+.     ...+ 
T Consensus        67 ~~~~~~~l~gaDvVVitaG~~~~~~~tR~dll~~N~~i~~~i~~~i~~~-~~~~iviv~SNPvdv~~~~~~~~~~~~sg~  145 (321)
T PTZ00325         67 GELWEKALRGADLVLICAGVPRKPGMTRDDLFNTNAPIVRDLVAAVASS-APKAIVGIVSNPVNSTVPIAAETLKKAGVY  145 (321)
T ss_pred             CCchHHHhCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-CCCeEEEEecCcHHHHHHHHHhhhhhccCC
Confidence                678999999998762  1            222555677778887 456666666665443 2222     3343 


Q ss_pred             CCCcEEee
Q psy9056         349 RPDKVRNM  356 (359)
Q Consensus       349 ~~~rvig~  356 (359)
                      +|++++|+
T Consensus       146 p~~~viG~  153 (321)
T PTZ00325        146 DPRKLFGV  153 (321)
T ss_pred             Chhheeec
Confidence            56889886

>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1

Probab=98.11  E-value=5.3e-06  Score=77.14  Aligned_cols=100  Identities=17%  Similarity=0.139  Sum_probs=67.9

Q ss_pred             HHHHHHHCC--CeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcCCCCCccEEEEcccCCHH
Q psy9056         235 IAHVTVDKG--YNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPFKNADMVIEAVFEDIN  312 (359)
Q Consensus       235 iA~~l~~~G--~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~aD~Vi~avp~~~~  312 (359)
                      +|..|.++|  ++|+.||++++.++.+.+           .|..+.           ..++.+.+.++|+||+|+|.+. 
T Consensus         1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~~-----------~g~~~~-----------~~~~~~~~~~~DlvvlavP~~~-   57 (258)
T PF02153_consen    1 IALALRKAGPDVEVYGYDRDPETLEAALE-----------LGIIDE-----------ASTDIEAVEDADLVVLAVPVSA-   57 (258)
T ss_dssp             HHHHHHHTTTTSEEEEE-SSHHHHHHHHH-----------TTSSSE-----------EESHHHHGGCCSEEEE-S-HHH-
T ss_pred             ChHHHHhCCCCeEEEEEeCCHHHHHHHHH-----------CCCeee-----------ccCCHhHhcCCCEEEEcCCHHH-
Confidence            578889999  689999999988665432           222211           1122356899999999998655 


Q ss_pred             HHHHHHHHHHHhCCCCcEEEEcCCCC--cHHHHHhhcCCCCcEEeecC
Q psy9056         313 IKHQVIKEIEAVVPPHCVVATNTSAI--PITKIAAASKRPDKVRNMGR  358 (359)
Q Consensus       313 ~k~~v~~~l~~~~~~~~ii~s~ts~~--~~~~l~~~~~~~~rvig~h~  358 (359)
                       ...+++++.++++++++|++.+|..  .+..+.+..+...++||+|+
T Consensus        58 -~~~~l~~~~~~~~~~~iv~Dv~SvK~~~~~~~~~~~~~~~~~v~~HP  104 (258)
T PF02153_consen   58 -IEDVLEEIAPYLKPGAIVTDVGSVKAPIVEAMERLLPEGVRFVGGHP  104 (258)
T ss_dssp             -HHHHHHHHHCGS-TTSEEEE--S-CHHHHHHHHHHHTSSGEEEEEEE
T ss_pred             -HHHHHHHhhhhcCCCcEEEEeCCCCHHHHHHHHHhcCcccceeecCC
Confidence             6799999999999999998777653  23456666665679999996

3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.

>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent

Probab=98.09  E-value=1.3e-05  Score=77.04  Aligned_cols=121  Identities=16%  Similarity=0.105  Sum_probs=77.7

Q ss_pred             EEEEECC-CcchHHHHHHHHHCCC-------eeEEecCCHHH--HHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccc
Q psy9056         222 TVAVLGA-GLMGAGIAHVTVDKGY-------NTIVKDSFEKG--LARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGT  291 (359)
Q Consensus       222 kI~IIG~-G~mG~~iA~~l~~~G~-------~V~l~d~~~~~--l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~  291 (359)
                      +|+|||+ |.+|+.++..+...|+       +++|+|++++.  ++.....+.+...              .....+..+
T Consensus         1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~~~~~~a~g~~~Dl~d~~~--------------~~~~~~~~~   66 (324)
T TIGR01758         1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIPPAMKVLEGVVMELMDCAF--------------PLLDGVVPT   66 (324)
T ss_pred             CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEecCCcccccceeEeehhcccc--------------hhcCceecc
Confidence            6899999 9999999999998665       59999996542  2222122221110              011223333


Q ss_pred             -cCcCCCCCccEEEEcccC--------------CHHHHHHHHHHHHHhCCCCcEEEEcCCCCcH--HHHHhhc-CCCCcE
Q psy9056         292 -LSYDPFKNADMVIEAVFE--------------DINIKHQVIKEIEAVVPPHCVVATNTSAIPI--TKIAAAS-KRPDKV  353 (359)
Q Consensus       292 -~~~~~l~~aD~Vi~avp~--------------~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~--~~l~~~~-~~~~rv  353 (359)
                       ++++++++||+||++.-.              +..+.+++.+.|.++++++.+++..|+.+.+  ..+.+.. ..|.++
T Consensus        67 ~~~~~~~~~aDiVVitAG~~~~~~~tr~~ll~~N~~i~k~i~~~i~~~~~~~~iiivvsNPvDv~t~v~~~~sg~~~~~v  146 (324)
T TIGR01758        67 HDPAVAFTDVDVAILVGAFPRKEGMERRDLLSKNVKIFKEQGRALDKLAKKDCKVLVVGNPANTNALVLSNYAPSIPPKN  146 (324)
T ss_pred             CChHHHhCCCCEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCcHHHHHHHHHHHcCCCCcce
Confidence             346899999999986521              3335667778899987677777666665443  4455666 455667


Q ss_pred             Eee
Q psy9056         354 RNM  356 (359)
Q Consensus       354 ig~  356 (359)
                      +|+
T Consensus       147 ig~  149 (324)
T TIGR01758       147 FSA  149 (324)
T ss_pred             EEE
Confidence            774

This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography

>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=98.09  E-value=3.3e-06  Score=74.09  Aligned_cols=104  Identities=19%  Similarity=0.158  Sum_probs=69.8

Q ss_pred             ccEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CCCC
Q psy9056         220 VKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DPFK  298 (359)
Q Consensus       220 ~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~l~  298 (359)
                      =++|+|||.|.+|..+|..+..-|.+|+.||++....+...           .             ... ...++ +.++
T Consensus        36 g~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~-----------~-------------~~~-~~~~l~ell~   90 (178)
T PF02826_consen   36 GKTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSPKPEEGAD-----------E-------------FGV-EYVSLDELLA   90 (178)
T ss_dssp             TSEEEEESTSHHHHHHHHHHHHTT-EEEEEESSCHHHHHHH-----------H-------------TTE-EESSHHHHHH
T ss_pred             CCEEEEEEEcCCcCeEeeeeecCCceeEEecccCChhhhcc-----------c-------------ccc-eeeehhhhcc
Confidence            37999999999999999999999999999999987533110           0             011 12234 4578


Q ss_pred             CccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCcH--HHHHhhcC
Q psy9056         299 NADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPI--TKIAAASK  348 (359)
Q Consensus       299 ~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~--~~l~~~~~  348 (359)
                      .||+|+.++|-+.+...-+=++..+.++++.++++.+-|--+  +.+.+.+.
T Consensus        91 ~aDiv~~~~plt~~T~~li~~~~l~~mk~ga~lvN~aRG~~vde~aL~~aL~  142 (178)
T PF02826_consen   91 QADIVSLHLPLTPETRGLINAEFLAKMKPGAVLVNVARGELVDEDALLDALE  142 (178)
T ss_dssp             H-SEEEE-SSSSTTTTTSBSHHHHHTSTTTEEEEESSSGGGB-HHHHHHHHH
T ss_pred             hhhhhhhhhccccccceeeeeeeeeccccceEEEeccchhhhhhhHHHHHHh
Confidence            899999999976653333335566678999999876655333  45555553

All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....

>PRK09287 6-phosphogluconate dehydrogenase; Validated

Probab=98.08  E-value=7.1e-06  Score=82.16  Aligned_cols=91  Identities=13%  Similarity=0.152  Sum_probs=66.1

Q ss_pred             chHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcC----CCCCccEEEEc
Q psy9056         231 MGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYD----PFKNADMVIEA  306 (359)
Q Consensus       231 mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~----~l~~aD~Vi~a  306 (359)
                      ||..||..|+++||+|.+||+++++.+...+..          +.         -..+....+.+    .++.+|+||.|
T Consensus         1 MG~~mA~nL~~~G~~V~v~nrt~~~~~~l~~~~----------g~---------~~g~~~~~s~~e~v~~l~~~~~Ii~m   61 (459)
T PRK09287          1 MGKNLALNIASHGYTVAVYNRTPEKTDEFLAEE----------GK---------GKKIVPAYTLEEFVASLEKPRKILLM   61 (459)
T ss_pred             CcHHHHHHHHhCCCeEEEECCCHHHHHHHHHhh----------CC---------CCCeEeeCCHHHHHhhCCCCCEEEEE
Confidence            899999999999999999999999877654310          00         01133334442    23458999999


Q ss_pred             ccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCcHH
Q psy9056         307 VFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPIT  341 (359)
Q Consensus       307 vp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~  341 (359)
                      +|.... .++++..+.+++.++.||+..+++.+..
T Consensus        62 v~~g~~-v~~Vi~~l~~~l~~GdiiID~gn~~~~~   95 (459)
T PRK09287         62 VKAGAP-VDAVIEQLLPLLEKGDIIIDGGNSNYKD   95 (459)
T ss_pred             CCCchH-HHHHHHHHHhcCCCCCEEEECCCCCHHH
Confidence            998765 5667788999999999998877655443

>PRK13302 putative L-aspartate dehydrogenase; Provisional

Probab=98.05  E-value=2.4e-05  Score=73.25  Aligned_cols=81  Identities=20%  Similarity=0.199  Sum_probs=55.2

Q ss_pred             CCccEEEEECCCcchHHHHHHHHHC--CCeeE-EecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc
Q psy9056         218 TPVKTVAVLGAGLMGAGIAHVTVDK--GYNTI-VKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY  294 (359)
Q Consensus       218 ~~~~kI~IIG~G~mG~~iA~~l~~~--G~~V~-l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~  294 (359)
                      |+..||||||+|.||..++..+.+.  +++|. ++|+++++.+.....+                      +.....+++
T Consensus         4 m~~irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr~~~~a~~~a~~~----------------------g~~~~~~~~   61 (271)
T PRK13302          4 RPELRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVRDPQRHADFIWGL----------------------RRPPPVVPL   61 (271)
T ss_pred             CCeeEEEEECccHHHHHHHHHHHhcCCCeEEEEEECCCHHHHHHHHHhc----------------------CCCcccCCH
Confidence            5567999999999999999999874  77775 8899988755432211                      001122334


Q ss_pred             -CCCCCccEEEEcccCCHHHHHHHHHHHH
Q psy9056         295 -DPFKNADMVIEAVFEDINIKHQVIKEIE  322 (359)
Q Consensus       295 -~~l~~aD~Vi~avp~~~~~k~~v~~~l~  322 (359)
                       +.+.++|+|++|+|.+..  .++.....
T Consensus        62 eell~~~D~Vvi~tp~~~h--~e~~~~aL   88 (271)
T PRK13302         62 DQLATHADIVVEAAPASVL--RAIVEPVL   88 (271)
T ss_pred             HHHhcCCCEEEECCCcHHH--HHHHHHHH
Confidence             335779999999997663  45544443

>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]

Probab=98.01  E-value=1e-05  Score=77.59  Aligned_cols=103  Identities=20%  Similarity=0.176  Sum_probs=72.7

Q ss_pred             ccEEEEECCCcchHHHHHHHHHCCCeeEEecC-CHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CCC
Q psy9056         220 VKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDS-FEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DPF  297 (359)
Q Consensus       220 ~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~-~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~l  297 (359)
                      =++|||||.|.+|+.+|..+..-|.+|+.||+ .+...+..                          .......++ +.+
T Consensus       142 gkTvGIiG~G~IG~~va~~l~afgm~v~~~d~~~~~~~~~~--------------------------~~~~~~~~Ld~lL  195 (324)
T COG0111         142 GKTVGIIGLGRIGRAVAKRLKAFGMKVIGYDPYSPRERAGV--------------------------DGVVGVDSLDELL  195 (324)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCeEEEECCCCchhhhcc--------------------------ccceecccHHHHH
Confidence            37999999999999999999999999999999 33321110                          112233445 458


Q ss_pred             CCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCc--HHHHHhhcC
Q psy9056         298 KNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIP--ITKIAAASK  348 (359)
Q Consensus       298 ~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~--~~~l~~~~~  348 (359)
                      +.||+|+..+|-..+.+.-+=.+....++++.+++.++-|--  -..+.+.+.
T Consensus       196 ~~sDiv~lh~PlT~eT~g~i~~~~~a~MK~gailIN~aRG~vVde~aL~~AL~  248 (324)
T COG0111         196 AEADILTLHLPLTPETRGLINAEELAKMKPGAILINAARGGVVDEDALLAALD  248 (324)
T ss_pred             hhCCEEEEcCCCCcchhcccCHHHHhhCCCCeEEEECCCcceecHHHHHHHHH
Confidence            999999999998887544444556667899998876554433  235555554

>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase

Probab=97.99  E-value=1.3e-05  Score=81.89  Aligned_cols=103  Identities=15%  Similarity=0.110  Sum_probs=72.0

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CCCCC
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DPFKN  299 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~l~~  299 (359)
                      ++|+|||.|.||..+|..+...|.+|+.||+.... +...           +.             .+...+++ +.+++
T Consensus       139 ktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~-~~~~-----------~~-------------g~~~~~~l~ell~~  193 (525)
T TIGR01327       139 KTLGVIGLGRIGSIVAKRAKAFGMKVLAYDPYISP-ERAE-----------QL-------------GVELVDDLDELLAR  193 (525)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCh-hHHH-----------hc-------------CCEEcCCHHHHHhh
Confidence            78999999999999999999999999999985321 1100           00             11222344 45789


Q ss_pred             ccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCc--HHHHHhhcC
Q psy9056         300 ADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIP--ITKIAAASK  348 (359)
Q Consensus       300 aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~--~~~l~~~~~  348 (359)
                      ||+|+.++|-+.+.+.-+=++..+.++++++++..+-|--  -..+.+.+.
T Consensus       194 aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~  244 (525)
T TIGR01327       194 ADFITVHTPLTPETRGLIGAEELAKMKKGVIIVNCARGGIIDEAALYEALE  244 (525)
T ss_pred             CCEEEEccCCChhhccCcCHHHHhcCCCCeEEEEcCCCceeCHHHHHHHHH
Confidence            9999999998876544333556667899998887766533  345666554

This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.

>PRK06444 prephenate dehydrogenase; Provisional

Probab=97.98  E-value=2.8e-05  Score=69.21  Aligned_cols=75  Identities=17%  Similarity=0.186  Sum_probs=55.6

Q ss_pred             EEEEECC-CcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcCCCCCc
Q psy9056         222 TVAVLGA-GLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPFKNA  300 (359)
Q Consensus       222 kI~IIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~a  300 (359)
                      +|+|||+ |.||.-++..|.++|++|+                                                 +.+|
T Consensus         2 ~~~iiG~~G~mG~~~~~~~~~~g~~v~-------------------------------------------------~~~~   32 (197)
T PRK06444          2 MEIIIGKNGRLGRVLCSILDDNGLGVY-------------------------------------------------IKKA   32 (197)
T ss_pred             EEEEEecCCcHHHHHHHHHHhCCCEEE-------------------------------------------------ECCC
Confidence            8999998 9999999999999999985                                                 2468


Q ss_pred             cEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCcHHHHHhhcCCCCcEEeecC
Q psy9056         301 DMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPITKIAAASKRPDKVRNMGR  358 (359)
Q Consensus       301 D~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~rvig~h~  358 (359)
                      |+||+|+|.+.  ..++++++.      .+|++.+|...  .+.+.   ..+++|+|+
T Consensus        33 DlVilavPv~~--~~~~i~~~~------~~v~Dv~SvK~--~i~~~---~~~~vg~HP   77 (197)
T PRK06444         33 DHAFLSVPIDA--ALNYIESYD------NNFVEISSVKW--PFKKY---SGKIVSIHP   77 (197)
T ss_pred             CEEEEeCCHHH--HHHHHHHhC------CeEEeccccCH--HHHHh---cCCEEecCC
Confidence            99999999665  346666543      25666666433  23222   347999997

>cd00394 Clp_protease_like Caseinolytic protease (ClpP) is an ATP-dependent protease

Probab=97.95  E-value=1.4e-05  Score=68.81  Aligned_cols=77  Identities=17%  Similarity=0.080  Sum_probs=56.7

Q ss_pred             CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCc----------chHhHHhhh---------cChHHHHHHHhc
Q psy9056           1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGA----------GGTQRLPKL---------TALPNVLDMTLT   61 (359)
Q Consensus         1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~----------g~~~~l~~~---------~g~~~a~~~~lt   61 (359)
                      |.|.++|+.|+++||.|++.++  +.|++..+..+.....          .....+.+.         +......+++..
T Consensus        66 g~~~s~g~~la~~~d~~~~~~~--a~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~r~~~~~~~~~~~~~  143 (161)
T cd00394          66 GQAASAGYYIATAANKIVMAPG--TRVGSHGPIGGYGGNGNPTAQEADQRIILYFIARFISLVAENRGQTTEKLEEDIEK  143 (161)
T ss_pred             ChhHHHHHHHHhCCCEEEECCC--CEEEEeeeEEecCCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHhcC
Confidence            5688999999999999999988  9999998886654322          000011111         122346677888


Q ss_pred             CCCCCHHHHHHcCCccee
Q psy9056          62 GKTLKADKAKKMGIVDQL   79 (359)
Q Consensus        62 g~~~~a~eA~~~Glv~~~   79 (359)
                      +..++++||+++||||++
T Consensus       144 ~~~~~a~eA~~~GLvD~i  161 (161)
T cd00394         144 DLVLTAQEALEYGLVDAL  161 (161)
T ss_pred             CcEEcHHHHHHcCCcCcC
Confidence            999999999999999975

Clp protease (caseinolytic protease; ClpP; endopeptidase Clp; Peptidase S14; ATP-dependent protease, ClpAP)-like enzymes are highly conserved serine proteases and belong to the ClpP/Crotonase superfamily. Included in this family are Clp proteases that are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. The functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activity in the presence of ATP. Active site consists of the triad Ser, His and Asp, preferring hydrophobic or non-polar residues at P1 or P1' positions. The protease exists as a tetradec

>PRK13304 L-aspartate dehydrogenase; Reviewed

Probab=97.94  E-value=3.7e-05  Score=71.75  Aligned_cols=87  Identities=11%  Similarity=0.151  Sum_probs=57.8

Q ss_pred             cEEEEECCCcchHHHHHHHHHCC--Ce-eEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CC
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKG--YN-TIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DP  296 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G--~~-V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~  296 (359)
                      .||+|||+|.||..++..+.+.+  ++ +.++|+++++.+...+..                       .....+++ +.
T Consensus         2 mrIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~~~~~a~~~a~~~-----------------------~~~~~~~~~el   58 (265)
T PRK13304          2 LKIGIVGCGAIASLITKAILSGRINAELYAFYDRNLEKAENLASKT-----------------------GAKACLSIDEL   58 (265)
T ss_pred             CEEEEECccHHHHHHHHHHHcCCCCeEEEEEECCCHHHHHHHHHhc-----------------------CCeeECCHHHH
Confidence            58999999999999999998763  55 568899988765432210                       11223444 33


Q ss_pred             CCCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEE
Q psy9056         297 FKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVAT  333 (359)
Q Consensus       297 l~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s  333 (359)
                      +.++|+|++|+|.+.  ..++..++.+. +.+.++.+
T Consensus        59 l~~~DvVvi~a~~~~--~~~~~~~al~~-Gk~Vvv~s   92 (265)
T PRK13304         59 VEDVDLVVECASVNA--VEEVVPKSLEN-GKDVIIMS   92 (265)
T ss_pred             hcCCCEEEEcCChHH--HHHHHHHHHHc-CCCEEEEc
Confidence            588999999997544  44665555443 34444433

>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4

Probab=97.94  E-value=0.00011  Score=73.20  Aligned_cols=122  Identities=17%  Similarity=0.167  Sum_probs=78.1

Q ss_pred             cEEEEECCCcc-hHHHHHHHHHC-----CCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc
Q psy9056         221 KTVAVLGAGLM-GAGIAHVTVDK-----GYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY  294 (359)
Q Consensus       221 ~kI~IIG~G~m-G~~iA~~l~~~-----G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~  294 (359)
                      .||+|||+|+. ...+...+.+.     +-+|.++|+|+++++....-.+..    .+....+        -++..++|.
T Consensus         1 ~KI~iIGgGS~~tp~li~~l~~~~~~l~~~ei~L~Did~~Rl~~v~~l~~~~----~~~~g~~--------~~v~~ttD~   68 (425)
T cd05197           1 VKIAIIGGGSSFTPELVSGLLKTPEELPISEVTLYDIDEERLDIILTIAKRY----VEEVGAD--------IKFEKTMDL   68 (425)
T ss_pred             CEEEEECCchHhHHHHHHHHHcChhhCCCCEEEEEcCCHHHHHHHHHHHHHH----HHhhCCC--------eEEEEeCCH
Confidence            38999999883 33445555544     358999999999988743333322    2221110        146678888


Q ss_pred             -CCCCCccEEEEccc----------------------------------CCHHHHHHHHHHHHHhCCCCcEEEEcCCCCc
Q psy9056         295 -DPFKNADMVIEAVF----------------------------------EDINIKHQVIKEIEAVVPPHCVVATNTSAIP  339 (359)
Q Consensus       295 -~~l~~aD~Vi~avp----------------------------------~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~  339 (359)
                       +++.+||+||.++-                                  .+..+..++.+.+.+++ |+.+++..|+...
T Consensus        69 ~~Al~gADfVi~~irvGg~~~r~~De~Iplk~G~~gqeT~G~GG~~~alrni~ii~~i~~~i~~~~-P~a~lin~TNP~d  147 (425)
T cd05197          69 EDAIIDADFVINQFRVGGLTYREKDEQIPLKYGVIGQETVGPGGTFSGLRQIPYVLDIARKXEKLS-PDAWYLNFTNPAG  147 (425)
T ss_pred             HHHhCCCCEEEEeeecCChHHHHHHHhHHHHcCcccccccCcchhhhhhhhHHHHHHHHHHHHHhC-CCcEEEecCChHH
Confidence             78999999996542                                  13336667888899987 5676665555443


Q ss_pred             --HHHHHhhcCCCCcEEee
Q psy9056         340 --ITKIAAASKRPDKVRNM  356 (359)
Q Consensus       340 --~~~l~~~~~~~~rvig~  356 (359)
                        ...+...+ ++.|+||+
T Consensus       148 i~t~a~~~~~-p~~rviG~  165 (425)
T cd05197         148 EVTEAVRRYV-PPEKAVGL  165 (425)
T ss_pred             HHHHHHHHhC-CCCcEEEE
Confidence              34454443 45789985

Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=97.93  E-value=2.7e-05  Score=73.50  Aligned_cols=90  Identities=22%  Similarity=0.210  Sum_probs=62.8

Q ss_pred             ccEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CCCC
Q psy9056         220 VKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DPFK  298 (359)
Q Consensus       220 ~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~l~  298 (359)
                      -++|+|+|.|.+|..+|..+...|.+|+++++++++++....           .+. .         .+. ..++ +.+.
T Consensus       151 gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~~~~~~~~~-----------~g~-~---------~~~-~~~l~~~l~  208 (287)
T TIGR02853       151 GSNVMVLGFGRTGMTIARTFSALGARVFVGARSSADLARITE-----------MGL-I---------PFP-LNKLEEKVA  208 (287)
T ss_pred             CCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH-----------CCC-e---------eec-HHHHHHHhc
Confidence            379999999999999999999999999999999876543211           010 0         000 1122 4578


Q ss_pred             CccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCC
Q psy9056         299 NADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTS  336 (359)
Q Consensus       299 ~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts  336 (359)
                      ++|+||.++|...-     -++..+.++++++|++.++
T Consensus       209 ~aDiVint~P~~ii-----~~~~l~~~k~~aliIDlas  241 (287)
T TIGR02853       209 EIDIVINTIPALVL-----TADVLSKLPKHAVIIDLAS  241 (287)
T ss_pred             cCCEEEECCChHHh-----CHHHHhcCCCCeEEEEeCc
Confidence            99999999985421     1334455678888876655

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>PLN02928 oxidoreductase family protein

Probab=97.91  E-value=1.8e-05  Score=76.66  Aligned_cols=115  Identities=17%  Similarity=0.104  Sum_probs=73.2

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CCCCC
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DPFKN  299 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~l~~  299 (359)
                      ++|+|||.|.||..+|..+...|.+|+.||++........  ..  +    ...     ......+......++ +.++.
T Consensus       160 ktvGIiG~G~IG~~vA~~l~afG~~V~~~dr~~~~~~~~~--~~--~----~~~-----~~~~~~~~~~~~~~L~ell~~  226 (347)
T PLN02928        160 KTVFILGYGAIGIELAKRLRPFGVKLLATRRSWTSEPEDG--LL--I----PNG-----DVDDLVDEKGGHEDIYEFAGE  226 (347)
T ss_pred             CEEEEECCCHHHHHHHHHHhhCCCEEEEECCCCChhhhhh--hc--c----ccc-----cccccccccCcccCHHHHHhh
Confidence            7999999999999999999999999999998743211000  00  0    000     000000000011234 45799


Q ss_pred             ccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCC--cHHHHHhhcC
Q psy9056         300 ADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAI--PITKIAAASK  348 (359)
Q Consensus       300 aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~--~~~~l~~~~~  348 (359)
                      ||+|+.++|-+.+...-+-++..+.++++.+|++.+-|-  .-..+.+.+.
T Consensus       227 aDiVvl~lPlt~~T~~li~~~~l~~Mk~ga~lINvaRG~lVde~AL~~AL~  277 (347)
T PLN02928        227 ADIVVLCCTLTKETAGIVNDEFLSSMKKGALLVNIARGGLLDYDAVLAALE  277 (347)
T ss_pred             CCEEEECCCCChHhhcccCHHHHhcCCCCeEEEECCCccccCHHHHHHHHH
Confidence            999999999887754444456777789999998776553  3345655554

>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3

Probab=97.91  E-value=0.00015  Score=63.65  Aligned_cols=121  Identities=17%  Similarity=0.211  Sum_probs=73.8

Q ss_pred             EEEEECCCcchHHHHH-HHHHC-----CCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-
Q psy9056         222 TVAVLGAGLMGAGIAH-VTVDK-----GYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-  294 (359)
Q Consensus       222 kI~IIG~G~mG~~iA~-~l~~~-----G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-  294 (359)
                      ||+|||+|+.-.+.-. .....     +-+|.++|+|+++++....-.+...    +....+        -++..++|. 
T Consensus         1 KI~iIGaGS~~~~~~l~~~l~~~~~l~~~ei~L~Did~~RL~~~~~~~~~~~----~~~~~~--------~~v~~ttd~~   68 (183)
T PF02056_consen    1 KITIIGAGSTYFPLLLLGDLLRTEELSGSEIVLMDIDEERLEIVERLARRMV----EEAGAD--------LKVEATTDRR   68 (183)
T ss_dssp             EEEEETTTSCCHHHHHHHHHHCTTTSTEEEEEEE-SCHHHHHHHHHHHHHHH----HHCTTS--------SEEEEESSHH
T ss_pred             CEEEECCchHhhHHHHHHHHhcCccCCCcEEEEEcCCHHHHHHHHHHHHHHH----HhcCCC--------eEEEEeCCHH
Confidence            7999999998887543 23332     2389999999999887655444332    221111        146678888 


Q ss_pred             CCCCCccEEEEcccC------------------------------------CHHHHHHHHHHHHHhCCCCcEEEEcCCCC
Q psy9056         295 DPFKNADMVIEAVFE------------------------------------DINIKHQVIKEIEAVVPPHCVVATNTSAI  338 (359)
Q Consensus       295 ~~l~~aD~Vi~avp~------------------------------------~~~~k~~v~~~l~~~~~~~~ii~s~ts~~  338 (359)
                      ++++++|+||.++-.                                    +..+..++.+.+.+++ |+.-++.-|+..
T Consensus        69 eAl~gADfVi~~irvGg~~~r~~De~Ip~k~Gi~~~~~eT~G~GG~~~alRtipv~~~ia~~i~~~~-PdAw~iNytNP~  147 (183)
T PF02056_consen   69 EALEGADFVINQIRVGGLEAREIDEEIPLKYGIVGTIQETVGPGGFFRALRTIPVMLDIARDIEELC-PDAWLINYTNPM  147 (183)
T ss_dssp             HHHTTESEEEE---TTHHHHHHHHHHTGGCCTTT-BTTSSSTHHHHHHHHHHHHHHHHHHHHHHHHT-TTSEEEE-SSSH
T ss_pred             HHhCCCCEEEEEeeecchHHHHHHHHHHHHhCCccccccccCccHHHHHHhhHHHHHHHHHHHHHhC-CCcEEEeccChH
Confidence            679999999975521                                    1114446778899997 577776666543


Q ss_pred             cH--HHHHhhcCCCCcEEee
Q psy9056         339 PI--TKIAAASKRPDKVRNM  356 (359)
Q Consensus       339 ~~--~~l~~~~~~~~rvig~  356 (359)
                      .+  +.+.... ...+++|+
T Consensus       148 ~~vt~a~~r~~-~~~k~vGl  166 (183)
T PF02056_consen  148 GIVTEALSRYT-PKIKVVGL  166 (183)
T ss_dssp             HHHHHHHHHHS-TTSEEEEE
T ss_pred             HHHHHHHHHhC-CCCCEEEE
Confidence            32  3333333 33678874

2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.

>COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]

Probab=97.90  E-value=3.1e-05  Score=74.30  Aligned_cols=118  Identities=17%  Similarity=0.216  Sum_probs=80.7

Q ss_pred             ccEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc----C
Q psy9056         220 VKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY----D  295 (359)
Q Consensus       220 ~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~----~  295 (359)
                      ...||+||.|.||..+|..++.+||.|.+|+|+.++.++..+.-       ...+            ++....++    .
T Consensus         3 ~~~iGviGLaVMG~NLaLNi~~~G~~VavyNRt~~ktd~f~~~~-------~~~k------------~i~~~~sieefV~   63 (473)
T COG0362           3 KADIGVIGLAVMGSNLALNIADHGYTVAVYNRTTEKTDEFLAER-------AKGK------------NIVPAYSIEEFVA   63 (473)
T ss_pred             ccceeeEehhhhhHHHHHHHHhcCceEEEEeCCHHHHHHHHHhC-------ccCC------------CccccCcHHHHHH
Confidence            35799999999999999999999999999999999988755321       1111            23333333    2


Q ss_pred             CCCCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCcHHHHH--hhc-CCCCcEEeec
Q psy9056         296 PFKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPITKIA--AAS-KRPDKVRNMG  357 (359)
Q Consensus       296 ~l~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~l~--~~~-~~~~rvig~h  357 (359)
                      .++..--|++.|-.- ..+..++++|.+++.++.||++..++.-..++.  ..+ ...-.|||+.
T Consensus        64 ~Le~PRkI~lMVkAG-~~VD~~I~~L~p~Le~gDIiIDGGNs~y~DT~RR~~eL~~~Gi~FvG~G  127 (473)
T COG0362          64 SLEKPRKILLMVKAG-TPVDAVIEQLLPLLEKGDIIIDGGNSHYKDTIRRNKELSEKGILFVGMG  127 (473)
T ss_pred             HhcCCceEEEEEecC-CcHHHHHHHHHhhcCCCCEEEeCCCcCCchHHHHHHHHHhcCCeEEecc
Confidence            456666777766443 335788899999999999999877654333322  222 2334566653

>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase

Probab=97.89  E-value=0.00031  Score=67.10  Aligned_cols=95  Identities=18%  Similarity=0.129  Sum_probs=62.3

Q ss_pred             ccEEEEECCCcchHHHHHHHHHCC-CeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CCC
Q psy9056         220 VKTVAVLGAGLMGAGIAHVTVDKG-YNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DPF  297 (359)
Q Consensus       220 ~~kI~IIG~G~mG~~iA~~l~~~G-~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~l  297 (359)
                      -++|+|||+|.||..++..+...| .+|+++|+++++.+.....+..        .             ....++. +.+
T Consensus       178 ~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~g~--------~-------------~~~~~~~~~~l  236 (311)
T cd05213         178 GKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEELAKELGG--------N-------------AVPLDELLELL  236 (311)
T ss_pred             CCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHcCC--------e-------------EEeHHHHHHHH
Confidence            378999999999999999998866 6899999999876654332210        0             0000122 446


Q ss_pred             CCccEEEEcccCCHHHHHHHHHHHHHhC-CCCcEEEEcCCC
Q psy9056         298 KNADMVIEAVFEDINIKHQVIKEIEAVV-PPHCVVATNTSA  337 (359)
Q Consensus       298 ~~aD~Vi~avp~~~~~k~~v~~~l~~~~-~~~~ii~s~ts~  337 (359)
                      .++|+||.|++.+..  ..++..+.+.. ..+.++++.+..
T Consensus       237 ~~aDvVi~at~~~~~--~~~~~~~~~~~~~~~~~viDlavP  275 (311)
T cd05213         237 NEADVVISATGAPHY--AKIVERAMKKRSGKPRLIVDLAVP  275 (311)
T ss_pred             hcCCEEEECCCCCch--HHHHHHHHhhCCCCCeEEEEeCCC
Confidence            789999999986654  33344433222 245677766543

Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,

>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3

Probab=97.88  E-value=3.5e-05  Score=65.97  Aligned_cols=98  Identities=18%  Similarity=0.177  Sum_probs=60.4

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcCCCCCc
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPFKNA  300 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~a  300 (359)
                      +++.|+|.|.+|.++|..+...|.+|+++|+||-++-++..                        +.+.+.+-.+++..+
T Consensus        24 k~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DPi~alqA~~------------------------dGf~v~~~~~a~~~a   79 (162)
T PF00670_consen   24 KRVVVIGYGKVGKGIARALRGLGARVTVTEIDPIRALQAAM------------------------DGFEVMTLEEALRDA   79 (162)
T ss_dssp             SEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHH------------------------TT-EEE-HHHHTTT-
T ss_pred             CEEEEeCCCcccHHHHHHHhhCCCEEEEEECChHHHHHhhh------------------------cCcEecCHHHHHhhC
Confidence            68999999999999999999999999999999965433221                        223333222568999


Q ss_pred             cEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCC---CCcHHHHHhh
Q psy9056         301 DMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTS---AIPITKIAAA  346 (359)
Q Consensus       301 D~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts---~~~~~~l~~~  346 (359)
                      |++|-++-...-+..+-    .+.+++++|+++.++   -+.+..+.+.
T Consensus        80 di~vtaTG~~~vi~~e~----~~~mkdgail~n~Gh~d~Eid~~~L~~~  124 (162)
T PF00670_consen   80 DIFVTATGNKDVITGEH----FRQMKDGAILANAGHFDVEIDVDALEAN  124 (162)
T ss_dssp             SEEEE-SSSSSSB-HHH----HHHS-TTEEEEESSSSTTSBTHHHHHTC
T ss_pred             CEEEECCCCccccCHHH----HHHhcCCeEEeccCcCceeEeecccccc
Confidence            99998875433122233    335788999987654   2445555444

3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....

>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=97.87  E-value=2.7e-05  Score=79.66  Aligned_cols=102  Identities=19%  Similarity=0.175  Sum_probs=72.7

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CCCCC
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DPFKN  299 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~l~~  299 (359)
                      ++|+|||.|.||..+|..+...|.+|+.||+.... +...           ..             .+... ++ +.++.
T Consensus       141 ktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~-~~~~-----------~~-------------g~~~~-~l~ell~~  194 (526)
T PRK13581        141 KTLGIIGLGRIGSEVAKRAKAFGMKVIAYDPYISP-ERAA-----------QL-------------GVELV-SLDELLAR  194 (526)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCh-hHHH-----------hc-------------CCEEE-cHHHHHhh
Confidence            78999999999999999999999999999986421 1100           00             11122 33 45799


Q ss_pred             ccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCc--HHHHHhhcC
Q psy9056         300 ADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIP--ITKIAAASK  348 (359)
Q Consensus       300 aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~--~~~l~~~~~  348 (359)
                      ||+|+.++|.+.+.+.-+-++..+.++++.+++..+.|-.  -..+.+.+.
T Consensus       195 aDiV~l~lP~t~~t~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~  245 (526)
T PRK13581        195 ADFITLHTPLTPETRGLIGAEELAKMKPGVRIINCARGGIIDEAALAEALK  245 (526)
T ss_pred             CCEEEEccCCChHhhcCcCHHHHhcCCCCeEEEECCCCceeCHHHHHHHHh
Confidence            9999999998877544443667778899999887665533  345656554

>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.85  E-value=3.5e-05  Score=72.65  Aligned_cols=91  Identities=20%  Similarity=0.154  Sum_probs=66.7

Q ss_pred             hhhHHHHHhHhhhhhhhhcCCCCCCCCccEEEEECCC-cchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHH
Q psy9056         193 PQSKGLMGLFRAQTECKKNRLGKPQTPVKTVAVLGAG-LMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAV  271 (359)
Q Consensus       193 ~~~~~~~~af~~k~~~~~~~~~~~~~~~~kI~IIG~G-~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~  271 (359)
                      |-+..|+-.+++...-   +     -.=++|+|||.| .||.+||..|.++|++|++|++....++              
T Consensus       140 PcTp~aii~lL~~~~i---~-----l~Gk~V~vIG~s~ivG~PmA~~L~~~gatVtv~~~~t~~l~--------------  197 (301)
T PRK14194        140 PCTPSGCLRLLEDTCG---D-----LTGKHAVVIGRSNIVGKPMAALLLQAHCSVTVVHSRSTDAK--------------  197 (301)
T ss_pred             CCcHHHHHHHHHHhCC---C-----CCCCEEEEECCCCccHHHHHHHHHHCCCEEEEECCCCCCHH--------------
Confidence            4556777777776642   1     222799999995 9999999999999999999986643111              


Q ss_pred             hhccCChHHHHhhhcccccccCcCCCCCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcC
Q psy9056         272 KRKKMSALDRDRYLASLVGTLSYDPFKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNT  335 (359)
Q Consensus       272 ~~~~~~~~~~~~~~~~i~~~~~~~~l~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~t  335 (359)
                                             +.+++||+||.|++....+...       +++++++|++.+
T Consensus       198 -----------------------e~~~~ADIVIsavg~~~~v~~~-------~ik~GaiVIDvg  231 (301)
T PRK14194        198 -----------------------ALCRQADIVVAAVGRPRLIDAD-------WLKPGAVVIDVG  231 (301)
T ss_pred             -----------------------HHHhcCCEEEEecCChhcccHh-------hccCCcEEEEec
Confidence                                   3468899999999866443322       267899988765

>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=97.84  E-value=2.9e-05  Score=76.92  Aligned_cols=101  Identities=21%  Similarity=0.205  Sum_probs=72.3

Q ss_pred             ccEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CCCC
Q psy9056         220 VKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DPFK  298 (359)
Q Consensus       220 ~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~l~  298 (359)
                      =++|||||.|.+|..+|..+...|.+|+.||+.+....                            .......++ +.++
T Consensus       151 gktvGIiG~G~IG~~vA~~~~~fGm~V~~~d~~~~~~~----------------------------~~~~~~~~l~ell~  202 (409)
T PRK11790        151 GKTLGIVGYGHIGTQLSVLAESLGMRVYFYDIEDKLPL----------------------------GNARQVGSLEELLA  202 (409)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCccccc----------------------------CCceecCCHHHHHh
Confidence            37999999999999999999999999999998642100                            011122344 4579


Q ss_pred             CccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCC--cHHHHHhhcC
Q psy9056         299 NADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAI--PITKIAAASK  348 (359)
Q Consensus       299 ~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~--~~~~l~~~~~  348 (359)
                      .||+|+.++|-+.+.+.-+=++..+.++++.+++..+-|-  ....+.+.+.
T Consensus       203 ~sDiVslh~Plt~~T~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~  254 (409)
T PRK11790        203 QSDVVSLHVPETPSTKNMIGAEELALMKPGAILINASRGTVVDIDALADALK  254 (409)
T ss_pred             hCCEEEEcCCCChHHhhccCHHHHhcCCCCeEEEECCCCcccCHHHHHHHHH
Confidence            9999999999888754444356677789999988666543  3345555554

>PRK00257 erythronate-4-phosphate dehydrogenase; Validated

Probab=97.83  E-value=1.9e-05  Score=77.31  Aligned_cols=99  Identities=15%  Similarity=0.183  Sum_probs=68.2

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CCCCC
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DPFKN  299 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~l~~  299 (359)
                      ++|||||.|+||..+|..+...|.+|++||+.....+                +            ... ..++ +.+++
T Consensus       117 ktvGIIG~G~IG~~va~~l~a~G~~V~~~Dp~~~~~~----------------~------------~~~-~~~l~ell~~  167 (381)
T PRK00257        117 RTYGVVGAGHVGGRLVRVLRGLGWKVLVCDPPRQEAE----------------G------------DGD-FVSLERILEE  167 (381)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEECCcccccc----------------c------------Ccc-ccCHHHHHhh
Confidence            7899999999999999999999999999997543110                0            001 1233 44689


Q ss_pred             ccEEEEcccCCHH---HHHHHH-HHHHHhCCCCcEEEEcCCCCcH--HHHHhhcC
Q psy9056         300 ADMVIEAVFEDIN---IKHQVI-KEIEAVVPPHCVVATNTSAIPI--TKIAAASK  348 (359)
Q Consensus       300 aD~Vi~avp~~~~---~k~~v~-~~l~~~~~~~~ii~s~ts~~~~--~~l~~~~~  348 (359)
                      ||+|+.++|-..+   ....++ ++....+++++++++.+-|-.+  ..+.+.+.
T Consensus       168 aDiV~lh~Plt~~g~~~T~~li~~~~l~~mk~gailIN~aRG~vVde~AL~~aL~  222 (381)
T PRK00257        168 CDVISLHTPLTKEGEHPTRHLLDEAFLASLRPGAWLINASRGAVVDNQALREALL  222 (381)
T ss_pred             CCEEEEeCcCCCCccccccccCCHHHHhcCCCCeEEEECCCCcccCHHHHHHHHH
Confidence            9999999996542   122344 4456668999999876655333  45555543

>PRK08410 2-hydroxyacid dehydrogenase; Provisional

Probab=97.76  E-value=3.3e-05  Score=73.80  Aligned_cols=100  Identities=13%  Similarity=0.132  Sum_probs=71.4

Q ss_pred             ccEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CCCC
Q psy9056         220 VKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DPFK  298 (359)
Q Consensus       220 ~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~l~  298 (359)
                      =++|||||.|.+|..+|..+..-|-+|..||+.....+.                            .+. ..++ +.++
T Consensus       145 gktvGIiG~G~IG~~vA~~~~~fgm~V~~~d~~~~~~~~----------------------------~~~-~~~l~ell~  195 (311)
T PRK08410        145 GKKWGIIGLGTIGKRVAKIAQAFGAKVVYYSTSGKNKNE----------------------------EYE-RVSLEELLK  195 (311)
T ss_pred             CCEEEEECCCHHHHHHHHHHhhcCCEEEEECCCcccccc----------------------------Cce-eecHHHHhh
Confidence            378999999999999999999899999999986421000                            011 1233 4579


Q ss_pred             CccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCC--cHHHHHhhcC
Q psy9056         299 NADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAI--PITKIAAASK  348 (359)
Q Consensus       299 ~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~--~~~~l~~~~~  348 (359)
                      .||+|++++|-+.+.+.-+=++.-+.++++.++++.+-|-  .-..+.+.+.
T Consensus       196 ~sDvv~lh~Plt~~T~~li~~~~~~~Mk~~a~lIN~aRG~vVDe~AL~~AL~  247 (311)
T PRK08410        196 TSDIISIHAPLNEKTKNLIAYKELKLLKDGAILINVGRGGIVNEKDLAKALD  247 (311)
T ss_pred             cCCEEEEeCCCCchhhcccCHHHHHhCCCCeEEEECCCccccCHHHHHHHHH
Confidence            9999999999887754444456666789999998766553  3345655554

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=97.74  E-value=0.00016  Score=68.67  Aligned_cols=89  Identities=22%  Similarity=0.259  Sum_probs=62.2

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CCCCC
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DPFKN  299 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~l~~  299 (359)
                      ++|.|||.|.+|..++..+...|.+|+++|+++++.+....           .+. .         -+. ..++ +.+.+
T Consensus       153 ~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~~~~~~~~~-----------~G~-~---------~~~-~~~l~~~l~~  210 (296)
T PRK08306        153 SNVLVLGFGRTGMTLARTLKALGANVTVGARKSAHLARITE-----------MGL-S---------PFH-LSELAEEVGK  210 (296)
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH-----------cCC-e---------eec-HHHHHHHhCC
Confidence            79999999999999999999999999999999876443321           010 0         000 0122 45688


Q ss_pred             ccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCC
Q psy9056         300 ADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTS  336 (359)
Q Consensus       300 aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts  336 (359)
                      +|+||.++|...     +-++..+.++++.+|++..+
T Consensus       211 aDiVI~t~p~~~-----i~~~~l~~~~~g~vIIDla~  242 (296)
T PRK08306        211 IDIIFNTIPALV-----LTKEVLSKMPPEALIIDLAS  242 (296)
T ss_pred             CCEEEECCChhh-----hhHHHHHcCCCCcEEEEEcc
Confidence            999999998432     22445556778888876554

>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases

Probab=97.73  E-value=7e-05  Score=71.96  Aligned_cols=121  Identities=15%  Similarity=0.095  Sum_probs=73.8

Q ss_pred             cEEEEECC-CcchHHHHHHHHHCC-------CeeEEecCCHH--HHHHHHHHHHHhHHHHHhhccCChHHHHhhhccccc
Q psy9056         221 KTVAVLGA-GLMGAGIAHVTVDKG-------YNTIVKDSFEK--GLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVG  290 (359)
Q Consensus       221 ~kI~IIG~-G~mG~~iA~~l~~~G-------~~V~l~d~~~~--~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~  290 (359)
                      -||+|+|+ |.+|+.++..+...+       .+|+++|+++.  .++.....+.+...              ....++..
T Consensus         3 ~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~g~~~Dl~d~~~--------------~~~~~~~~   68 (325)
T cd01336           3 IRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGVVMELQDCAF--------------PLLKSVVA   68 (325)
T ss_pred             eEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCccccccceeeehhhccc--------------cccCCcee
Confidence            47999999 999999999999855       48999999753  12211111111000              01123344


Q ss_pred             ccCc-CCCCCccEEEEcccC--------------CHHHHHHHHHHHHHhCCCCcEEEEcCCCCcH--HHHHhhc-CCCCc
Q psy9056         291 TLSY-DPFKNADMVIEAVFE--------------DINIKHQVIKEIEAVVPPHCVVATNTSAIPI--TKIAAAS-KRPDK  352 (359)
Q Consensus       291 ~~~~-~~l~~aD~Vi~avp~--------------~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~--~~l~~~~-~~~~r  352 (359)
                      .+++ +++++||+||.+.-.              +..+.+++...|.++++++.+++..++...+  ..+.+.. ..|.+
T Consensus        69 ~~~~~~~l~~aDiVI~tAG~~~~~~~~R~~l~~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD~~t~~~~k~~~~~~~~  148 (325)
T cd01336          69 TTDPEEAFKDVDVAILVGAMPRKEGMERKDLLKANVKIFKEQGEALDKYAKKNVKVLVVGNPANTNALILLKYAPSIPKE  148 (325)
T ss_pred             cCCHHHHhCCCCEEEEeCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecCcHHHHHHHHHHHcCCCCHH
Confidence            4554 789999999986521              3334567778899988777776666654443  3444443 34433


Q ss_pred             EEe
Q psy9056         353 VRN  355 (359)
Q Consensus       353 vig  355 (359)
                      .+|
T Consensus       149 ~ig  151 (325)
T cd01336         149 NFT  151 (325)
T ss_pred             HEE
Confidence            354

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=97.72  E-value=0.00023  Score=64.88  Aligned_cols=95  Identities=20%  Similarity=0.284  Sum_probs=65.5

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhccccc-ccC---c-C
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVG-TLS---Y-D  295 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~-~~~---~-~  295 (359)
                      ++|.|||+|.+|.++|..|.+.|++|+++|.++++++.......       ...            -+.. .++   + +
T Consensus         1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~-------~~~------------~v~gd~t~~~~L~~   61 (225)
T COG0569           1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLADEL-------DTH------------VVIGDATDEDVLEE   61 (225)
T ss_pred             CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhhc-------ceE------------EEEecCCCHHHHHh
Confidence            58999999999999999999999999999999998776332100       000            0000 111   1 2


Q ss_pred             -CCCCccEEEEcccCCHHHHHHHHHHHHHh-CCCCcEEEEcCC
Q psy9056         296 -PFKNADMVIEAVFEDINIKHQVIKEIEAV-VPPHCVVATNTS  336 (359)
Q Consensus       296 -~l~~aD~Vi~avp~~~~~k~~v~~~l~~~-~~~~~ii~s~ts  336 (359)
                       .+.++|+++-++.++.  ...++-.+... ++...+|+-..+
T Consensus        62 agi~~aD~vva~t~~d~--~N~i~~~la~~~~gv~~viar~~~  102 (225)
T COG0569          62 AGIDDADAVVAATGNDE--VNSVLALLALKEFGVPRVIARARN  102 (225)
T ss_pred             cCCCcCCEEEEeeCCCH--HHHHHHHHHHHhcCCCcEEEEecC
Confidence             3799999999998877  55666665533 566667765444

>PRK06141 ornithine cyclodeaminase; Validated

Probab=97.71  E-value=7.7e-05  Score=71.38  Aligned_cols=94  Identities=10%  Similarity=0.054  Sum_probs=63.9

Q ss_pred             ccEEEEECCCcchHHHHHHHHH--CCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CC
Q psy9056         220 VKTVAVLGAGLMGAGIAHVTVD--KGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DP  296 (359)
Q Consensus       220 ~~kI~IIG~G~mG~~iA~~l~~--~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~  296 (359)
                      -++|+|||+|.||..++..+..  ...+|++|+|++++.+...+.++.       .+.           .+....+. +.
T Consensus       125 ~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~a~~~~~-------~g~-----------~~~~~~~~~~a  186 (314)
T PRK06141        125 ASRLLVVGTGRLASLLALAHASVRPIKQVRVWGRDPAKAEALAAELRA-------QGF-----------DAEVVTDLEAA  186 (314)
T ss_pred             CceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHh-------cCC-----------ceEEeCCHHHH
Confidence            4789999999999999885554  346899999999988876554321       010           12233444 46


Q ss_pred             CCCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCC
Q psy9056         297 FKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSA  337 (359)
Q Consensus       297 l~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~  337 (359)
                      +.++|+|+.|++...    .++..  +.++++++|...++.
T Consensus       187 v~~aDIVi~aT~s~~----pvl~~--~~l~~g~~i~~ig~~  221 (314)
T PRK06141        187 VRQADIISCATLSTE----PLVRG--EWLKPGTHLDLVGNF  221 (314)
T ss_pred             HhcCCEEEEeeCCCC----CEecH--HHcCCCCEEEeeCCC
Confidence            789999999888663    33321  456788876555443

>TIGR00745 apbA_panE 2-dehydropantoate 2-reductase

Probab=97.71  E-value=0.00016  Score=68.04  Aligned_cols=112  Identities=9%  Similarity=-0.006  Sum_probs=73.2

Q ss_pred             cchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcCCCCCccEEEEcccC
Q psy9056         230 LMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPFKNADMVIEAVFE  309 (359)
Q Consensus       230 ~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~aD~Vi~avp~  309 (359)
                      .||+.+|..|+++|++|++++++ ++++...+.-- .+..  ..+.       .....+..+++.+.+...|+||+|++.
T Consensus         1 aiG~~~a~~L~~~G~~V~l~~r~-~~~~~i~~~Gl-~i~~--~~~~-------~~~~~~~~~~~~~~~~~~D~iiv~vKs   69 (293)
T TIGR00745         1 AVGSLYGAYLARAGHDVTLLARG-EQLEALNQEGL-RIVS--LGGE-------FQFRPVSAATSPEELPPADLVIITVKA   69 (293)
T ss_pred             CchHHHHHHHHhCCCcEEEEecH-HHHHHHHHCCc-EEEe--cCCc-------EEEcccccccChhhcCCCCEEEEeccc
Confidence            37999999999999999999997 55554322100 0000  0000       000022334455557789999999986


Q ss_pred             CHHHHHHHHHHHHHhCCCCcEEEEcCCCCcHHH-HHhhcCCCCcEEe
Q psy9056         310 DINIKHQVIKEIEAVVPPHCVVATNTSAIPITK-IAAASKRPDKVRN  355 (359)
Q Consensus       310 ~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~-l~~~~~~~~rvig  355 (359)
                      ..  ...+++.+.+++.++++|++..+|+...+ +...++ +.++++
T Consensus        70 ~~--~~~~l~~l~~~l~~~~~iv~~qNG~g~~~~l~~~~~-~~~v~~  113 (293)
T TIGR00745        70 YQ--TEEAAALLLPLIGKNTKVLFLQNGLGHEERLRELLP-ARRILG  113 (293)
T ss_pred             hh--HHHHHHHhHhhcCCCCEEEEccCCCCCHHHHHHHhC-ccCEEE
Confidence            65  56888999999999999999999987654 555443 345543

This model describes enzymes that perform as 2-dehydropantoate 2-reductase, one of four enzymes required for the de novo biosynthesis of pantothenate (vitamin B5) from Asp and 2-oxoisovalerate. Although few members of the seed alignment are characterized experimentally, nearly all from complete genomes are found in a genome-wide (but not local) context of all three other pantothenate-biosynthetic enzymes (TIGR00222, TIGR00018, TIGR00223). The gene encoding this enzyme is designated apbA in Salmonella typhimurium and panE in Escherichia coli; this protein functions as a monomer and functions in the alternative pyrimidine biosynthetic, or APB, pathway, used to synthesize the pyrimidine moiety of thiamine. Note, synthesis of the pyrimidine moiety of thiamine occurs either via the first five steps in de novo purine biosynthesis, which uses the pur gene products, or through the APB pathway. Note that this family includes both NADH and NADPH

>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=97.70  E-value=0.00055  Score=61.19  Aligned_cols=43  Identities=37%  Similarity=0.429  Sum_probs=37.5

Q ss_pred             CCccEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHH
Q psy9056         218 TPVKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGL  260 (359)
Q Consensus       218 ~~~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~  260 (359)
                      .+=++|+|+|.|.||..+|..|.+.|++|+++|+++++++...
T Consensus        26 l~gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~~~~~~~~   68 (200)
T cd01075          26 LEGKTVAVQGLGKVGYKLAEHLLEEGAKLIVADINEEAVARAA   68 (200)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHH
Confidence            3336899999999999999999999999999999988766543

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc

>cd07021 Clp_protease_NfeD_like Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease

Probab=97.69  E-value=8.3e-05  Score=65.20  Aligned_cols=76  Identities=22%  Similarity=0.189  Sum_probs=55.2

Q ss_pred             CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcch--------HhH------HhhhcC--hHHHHHHHhcC--
Q psy9056           1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGG--------TQR------LPKLTA--LPNVLDMTLTG--   62 (359)
Q Consensus         1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~--------~~~------l~~~~g--~~~a~~~~ltg--   62 (359)
                      +.|.++|+.|+++||+++|.++  +.|+.+++-.+    .++        +..      +.+.-|  ...+..|+-..  
T Consensus        67 g~AaSaG~~ia~a~d~i~m~p~--a~iG~~~~v~~----~~~~~~~~K~~~~~~~~~~~~A~~~gr~~~~a~~mv~~~~~  140 (178)
T cd07021          67 DRAASAGALIALAADEIYMAPG--ATIGAAEPIPG----DGNGAADEKVQSYWRAKMRAAAEKKGRDPDIAEAMVDKDIE  140 (178)
T ss_pred             CchHHHHHHHHHhCCeEEECCC--CeEecCeeEcC----CCccchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhhhcc
Confidence            5688999999999999999988  99999865432    222        111      232333  24455555544  


Q ss_pred             -----------CCCCHHHHHHcCCcceecCC
Q psy9056          63 -----------KTLKADKAKKMGIVDQLVEP   82 (359)
Q Consensus        63 -----------~~~~a~eA~~~Glv~~~~~~   82 (359)
                                 -.++++||++.|++|.++++
T Consensus       141 v~~~~~~~~~~l~lta~eA~~~g~~d~ia~~  171 (178)
T cd07021         141 VPGVGIKGGELLTLTADEALKVGYAEGIAGS  171 (178)
T ss_pred             cccccccccceeeeCHHHHHHhCCeEEEECC
Confidence                       27999999999999999987

Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentiall

>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase

Probab=97.68  E-value=0.00024  Score=70.59  Aligned_cols=121  Identities=13%  Similarity=0.169  Sum_probs=76.3

Q ss_pred             cEEEEECCCcchH-HHHHHHHHC-----CCeeEEecCC-HHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccC
Q psy9056         221 KTVAVLGAGLMGA-GIAHVTVDK-----GYNTIVKDSF-EKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLS  293 (359)
Q Consensus       221 ~kI~IIG~G~mG~-~iA~~l~~~-----G~~V~l~d~~-~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~  293 (359)
                      .||+|||+|+.-+ .+...+++.     +-+|+++|+| +++++....-.+....    ....+        -.+..++|
T Consensus         1 ~KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~Did~~~rl~~v~~~~~~~~~----~~~~~--------~~v~~t~d   68 (419)
T cd05296           1 MKLTIIGGGSSYTPELIEGLIRRYEELPVTELVLVDIDEEEKLEIVGALAKRMVK----KAGLP--------IKVHLTTD   68 (419)
T ss_pred             CEEEEECCchHhHHHHHHHHHhccccCCCCEEEEecCChHHHHHHHHHHHHHHHH----hhCCC--------eEEEEeCC
Confidence            4899999988644 334455542     3489999999 8887764443333222    11100        14666778


Q ss_pred             c-CCCCCccEEEEcccC----------------------------------CHHHHHHHHHHHHHhCCCCcEEEEcCCCC
Q psy9056         294 Y-DPFKNADMVIEAVFE----------------------------------DINIKHQVIKEIEAVVPPHCVVATNTSAI  338 (359)
Q Consensus       294 ~-~~l~~aD~Vi~avp~----------------------------------~~~~k~~v~~~l~~~~~~~~ii~s~ts~~  338 (359)
                      . +++.++|+||.++-.                                  +..+..++.+.+.+++ |+.+++..|+..
T Consensus        69 ~~~al~gadfVi~~~~vg~~~~r~~de~i~~~~Gi~gqET~G~GG~~~a~rni~ii~~i~~~i~~~~-Pda~lin~TNP~  147 (419)
T cd05296          69 RREALEGADFVFTQIRVGGLEARALDERIPLKHGVIGQETTGAGGFAKALRTIPVILDIAEDVEELA-PDAWLINFTNPA  147 (419)
T ss_pred             HHHHhCCCCEEEEEEeeCCcchhhhhhhhHHHcCCccccCCCcchHHHhhhhHHHHHHHHHHHHHHC-CCeEEEEecCHH
Confidence            7 689999999976521                                  1135667778899987 567666555544


Q ss_pred             c--HHHHHhhcCCCCcEEee
Q psy9056         339 P--ITKIAAASKRPDKVRNM  356 (359)
Q Consensus       339 ~--~~~l~~~~~~~~rvig~  356 (359)
                      .  .+.+....  +.|++|+
T Consensus       148 ~ivt~a~~k~~--~~rviGl  165 (419)
T cd05296         148 GIVTEAVLRHT--GDRVIGL  165 (419)
T ss_pred             HHHHHHHHHhc--cCCEEee
Confidence            3  33444433  7788885

Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein

>PRK06932 glycerate dehydrogenase; Provisional

Probab=97.68  E-value=7.1e-05  Score=71.61  Aligned_cols=98  Identities=14%  Similarity=0.205  Sum_probs=70.2

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CCCCC
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DPFKN  299 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~l~~  299 (359)
                      ++|||||.|.+|..+|..+..-|.+|+.||+....  .        .    .               .. ..++ +.++.
T Consensus       148 ktvgIiG~G~IG~~va~~l~~fg~~V~~~~~~~~~--~--------~----~---------------~~-~~~l~ell~~  197 (314)
T PRK06932        148 STLGVFGKGCLGTEVGRLAQALGMKVLYAEHKGAS--V--------C----R---------------EG-YTPFEEVLKQ  197 (314)
T ss_pred             CEEEEECCCHHHHHHHHHHhcCCCEEEEECCCccc--c--------c----c---------------cc-cCCHHHHHHh
Confidence            79999999999999999999889999999975321  0        0    0               00 1133 45799


Q ss_pred             ccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCC--CcHHHHHhhcC
Q psy9056         300 ADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSA--IPITKIAAASK  348 (359)
Q Consensus       300 aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~--~~~~~l~~~~~  348 (359)
                      ||+|+.++|-+.+...-+=++..+.++++.++++.+-|  +.-..+.+.+.
T Consensus       198 sDiv~l~~Plt~~T~~li~~~~l~~mk~ga~lIN~aRG~~Vde~AL~~aL~  248 (314)
T PRK06932        198 ADIVTLHCPLTETTQNLINAETLALMKPTAFLINTGRGPLVDEQALLDALE  248 (314)
T ss_pred             CCEEEEcCCCChHHhcccCHHHHHhCCCCeEEEECCCccccCHHHHHHHHH
Confidence            99999999988775444445666778999999866654  33345655554

>PRK06487 glycerate dehydrogenase; Provisional

Probab=97.68  E-value=5.7e-05  Score=72.38  Aligned_cols=97  Identities=18%  Similarity=0.208  Sum_probs=70.6

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CCCCC
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DPFKN  299 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~l~~  299 (359)
                      ++|||||.|.+|..+|..+...|.+|+.||+.... +.                             .. ..++ +.++.
T Consensus       149 ktvgIiG~G~IG~~vA~~l~~fgm~V~~~~~~~~~-~~-----------------------------~~-~~~l~ell~~  197 (317)
T PRK06487        149 KTLGLLGHGELGGAVARLAEAFGMRVLIGQLPGRP-AR-----------------------------PD-RLPLDELLPQ  197 (317)
T ss_pred             CEEEEECCCHHHHHHHHHHhhCCCEEEEECCCCCc-cc-----------------------------cc-ccCHHHHHHh
Confidence            69999999999999999999999999999986321 00                             00 0123 45799


Q ss_pred             ccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCc--HHHHHhhcC
Q psy9056         300 ADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIP--ITKIAAASK  348 (359)
Q Consensus       300 aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~--~~~l~~~~~  348 (359)
                      ||+|+.++|-+.+.+.-+=++.-+.++++.+++..+-|--  -..+.+.+.
T Consensus       198 sDiv~l~lPlt~~T~~li~~~~~~~mk~ga~lIN~aRG~vVde~AL~~AL~  248 (317)
T PRK06487        198 VDALTLHCPLTEHTRHLIGARELALMKPGALLINTARGGLVDEQALADALR  248 (317)
T ss_pred             CCEEEECCCCChHHhcCcCHHHHhcCCCCeEEEECCCccccCHHHHHHHHH
Confidence            9999999998887544444566677899999987665533  345655554

>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional

Probab=97.67  E-value=3.9e-05  Score=74.93  Aligned_cols=99  Identities=14%  Similarity=0.150  Sum_probs=66.9

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CCCCC
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DPFKN  299 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~l~~  299 (359)
                      ++|||||.|+||+.+|..+...|.+|.+||+....  .               +           .... ..++ +.++.
T Consensus       117 ktvGIIG~G~IG~~vA~~l~a~G~~V~~~dp~~~~--~---------------~-----------~~~~-~~~L~ell~~  167 (378)
T PRK15438        117 RTVGIVGVGNVGRRLQARLEALGIKTLLCDPPRAD--R---------------G-----------DEGD-FRSLDELVQE  167 (378)
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCEEEEECCcccc--c---------------c-----------cccc-cCCHHHHHhh
Confidence            79999999999999999999999999999964321  0               0           0000 1234 45689


Q ss_pred             ccEEEEcccCCHH---HHHHHH-HHHHHhCCCCcEEEEcCCC--CcHHHHHhhcC
Q psy9056         300 ADMVIEAVFEDIN---IKHQVI-KEIEAVVPPHCVVATNTSA--IPITKIAAASK  348 (359)
Q Consensus       300 aD~Vi~avp~~~~---~k~~v~-~~l~~~~~~~~ii~s~ts~--~~~~~l~~~~~  348 (359)
                      ||+|+..+|-..+   -...++ ++..+.+++++++++.+-|  +.-..+.+.+.
T Consensus       168 sDiI~lh~PLt~~g~~~T~~li~~~~l~~mk~gailIN~aRG~vVDe~AL~~aL~  222 (378)
T PRK15438        168 ADILTFHTPLFKDGPYKTLHLADEKLIRSLKPGAILINACRGAVVDNTALLTCLN  222 (378)
T ss_pred             CCEEEEeCCCCCCcccccccccCHHHHhcCCCCcEEEECCCchhcCHHHHHHHHH
Confidence            9999999985442   011333 4556678899999876655  33345555553

>PRK05086 malate dehydrogenase; Provisional

Probab=97.66  E-value=9.5e-05  Score=70.68  Aligned_cols=118  Identities=18%  Similarity=0.181  Sum_probs=72.2

Q ss_pred             cEEEEECC-CcchHHHHHHHHH---CCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhccccc--ccC-
Q psy9056         221 KTVAVLGA-GLMGAGIAHVTVD---KGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVG--TLS-  293 (359)
Q Consensus       221 ~kI~IIG~-G~mG~~iA~~l~~---~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~--~~~-  293 (359)
                      +||+|||+ |.+|..++..+..   .+++++++|+++.. +.....+.+.       .         ....+..  .++ 
T Consensus         1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~~-~g~alDl~~~-------~---------~~~~i~~~~~~d~   63 (312)
T PRK05086          1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVT-PGVAVDLSHI-------P---------TAVKIKGFSGEDP   63 (312)
T ss_pred             CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCCC-cceehhhhcC-------C---------CCceEEEeCCCCH
Confidence            58999999 9999999998855   24689999998542 1100111110       0         0001221  345 


Q ss_pred             cCCCCCccEEEEcccC--------------CHHHHHHHHHHHHHhCCCCcEEEEcCCCCcH--HHHH----hhcCC-CCc
Q psy9056         294 YDPFKNADMVIEAVFE--------------DINIKHQVIKEIEAVVPPHCVVATNTSAIPI--TKIA----AASKR-PDK  352 (359)
Q Consensus       294 ~~~l~~aD~Vi~avp~--------------~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~--~~l~----~~~~~-~~r  352 (359)
                      +++++++|+||.|.-.              +..+.+++.+.+.++ .++.+|+..|+...+  ..+.    ...+. ++|
T Consensus        64 ~~~l~~~DiVIitaG~~~~~~~~R~dll~~N~~i~~~ii~~i~~~-~~~~ivivvsNP~D~~t~~~~~~~~~~sg~p~~r  142 (312)
T PRK05086         64 TPALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVEKVAKT-CPKACIGIITNPVNTTVAIAAEVLKKAGVYDKNK  142 (312)
T ss_pred             HHHcCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEEccCchHHHHHHHHHHHHHhcCCCHHH
Confidence            4788999999998732              233566777888888 456766655555432  2222    44444 478


Q ss_pred             EEee
Q psy9056         353 VRNM  356 (359)
Q Consensus       353 vig~  356 (359)
                      ++|+
T Consensus       143 vig~  146 (312)
T PRK05086        143 LFGV  146 (312)
T ss_pred             EEee
Confidence            8886

>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional

Probab=97.66  E-value=8e-05  Score=71.49  Aligned_cols=103  Identities=14%  Similarity=0.089  Sum_probs=71.3

Q ss_pred             ccEEEEECCCcchHHHHHHHH-HCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CCC
Q psy9056         220 VKTVAVLGAGLMGAGIAHVTV-DKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DPF  297 (359)
Q Consensus       220 ~~kI~IIG~G~mG~~iA~~l~-~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~l  297 (359)
                      =++|||||.|.+|..+|..+. .-|-+|..||+....-..  .          ..             .... .++ +.+
T Consensus       145 gktvGIiG~G~IG~~va~~l~~~fgm~V~~~~~~~~~~~~--~----------~~-------------~~~~-~~l~ell  198 (323)
T PRK15409        145 HKTLGIVGMGRIGMALAQRAHFGFNMPILYNARRHHKEAE--E----------RF-------------NARY-CDLDTLL  198 (323)
T ss_pred             CCEEEEEcccHHHHHHHHHHHhcCCCEEEEECCCCchhhH--H----------hc-------------CcEe-cCHHHHH
Confidence            379999999999999999987 678899999987421000  0          00             1111 234 457


Q ss_pred             CCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCC--CcHHHHHhhcC
Q psy9056         298 KNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSA--IPITKIAAASK  348 (359)
Q Consensus       298 ~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~--~~~~~l~~~~~  348 (359)
                      +.||+|+.++|-+.+.+.-+=++..+.++++.+++..+-|  +.-+.+.+.+.
T Consensus       199 ~~sDvv~lh~plt~~T~~li~~~~l~~mk~ga~lIN~aRG~vVde~AL~~AL~  251 (323)
T PRK15409        199 QESDFVCIILPLTDETHHLFGAEQFAKMKSSAIFINAGRGPVVDENALIAALQ  251 (323)
T ss_pred             HhCCEEEEeCCCChHHhhccCHHHHhcCCCCeEEEECCCccccCHHHHHHHHH
Confidence            9999999999988875544445677778999998766544  33345656554

>PLN02306 hydroxypyruvate reductase

Probab=97.62  E-value=0.00012  Score=71.99  Aligned_cols=118  Identities=20%  Similarity=0.195  Sum_probs=73.3

Q ss_pred             ccEEEEECCCcchHHHHHHHH-HCCCeeEEecCCHHH-HHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CC
Q psy9056         220 VKTVAVLGAGLMGAGIAHVTV-DKGYNTIVKDSFEKG-LARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DP  296 (359)
Q Consensus       220 ~~kI~IIG~G~mG~~iA~~l~-~~G~~V~l~d~~~~~-l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~  296 (359)
                      =++|||||.|.+|..+|..+. .-|.+|+.||+.... .+.........+.   ..+. .       ........++ +.
T Consensus       165 gktvGIiG~G~IG~~vA~~l~~~fGm~V~~~d~~~~~~~~~~~~~~~~~l~---~~~~-~-------~~~~~~~~~L~el  233 (386)
T PLN02306        165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQSTRLEKFVTAYGQFLK---ANGE-Q-------PVTWKRASSMEEV  233 (386)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCCchhhhhhhhhhccccc---cccc-c-------cccccccCCHHHH
Confidence            379999999999999999985 679999999987642 1110000000000   0000 0       0011122355 45


Q ss_pred             CCCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCc--HHHHHhhcC
Q psy9056         297 FKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIP--ITKIAAASK  348 (359)
Q Consensus       297 l~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~--~~~l~~~~~  348 (359)
                      ++.||+|+.++|-+.+...-+=++..+.++++.+++..+-|--  -..+.+.+.
T Consensus       234 l~~sDiV~lh~Plt~~T~~lin~~~l~~MK~ga~lIN~aRG~lVDe~AL~~AL~  287 (386)
T PLN02306        234 LREADVISLHPVLDKTTYHLINKERLALMKKEAVLVNASRGPVIDEVALVEHLK  287 (386)
T ss_pred             HhhCCEEEEeCCCChhhhhhcCHHHHHhCCCCeEEEECCCccccCHHHHHHHHH
Confidence            7999999999998776544444667777899999987665533  345555553

>COG4007 Predicted dehydrogenase related to H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [General function prediction only]

Probab=97.60  E-value=0.00046  Score=62.80  Aligned_cols=98  Identities=10%  Similarity=0.137  Sum_probs=66.7

Q ss_pred             hHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhccccc-ccCcCCCCCccEEEEcccCC
Q psy9056         232 GAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVG-TLSYDPFKNADMVIEAVFED  310 (359)
Q Consensus       232 G~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~l~~aD~Vi~avp~~  310 (359)
                      |+.||..|+.+||+|++.|.|.+-.++.      .+++....             ..+. ++|.++++.+++.+.-+|=-
T Consensus        33 Ga~mAiefAeAGHDVVLaePn~d~~dd~------~w~~vedA-------------GV~vv~dD~eaa~~~Ei~VLFTPFG   93 (340)
T COG4007          33 GARMAIEFAEAGHDVVLAEPNRDIMDDE------HWKRVEDA-------------GVEVVSDDAEAAEHGEIHVLFTPFG   93 (340)
T ss_pred             chHHHHHHHHcCCcEEeecCCccccCHH------HHHHHHhc-------------CcEEecCchhhhhcceEEEEecccc
Confidence            8899999999999999999998765542      12222121             2444 44558899999999999854


Q ss_pred             -HHHHHHHHHHHHHhCCCCcEEEEcCCCCcH---HHHHhhcCCC
Q psy9056         311 -INIKHQVIKEIEAVVPPHCVVATNTSAIPI---TKIAAASKRP  350 (359)
Q Consensus       311 -~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~---~~l~~~~~~~  350 (359)
                       .+.  .+.+.|.++++.+.+|++.++.-++   ..+...+..+
T Consensus        94 k~T~--~Iarei~~hvpEgAVicnTCT~sp~vLy~~LE~~Lr~k  135 (340)
T COG4007          94 KATF--GIAREILEHVPEGAVICNTCTVSPVVLYYSLEGELRTK  135 (340)
T ss_pred             hhhH--HHHHHHHhhCcCCcEecccccCchhHHHHHhhhhhcCc
Confidence             433  6778999999999999743332222   2455555544

>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]

Probab=97.60  E-value=0.0003  Score=62.88  Aligned_cols=89  Identities=17%  Similarity=0.190  Sum_probs=61.2

Q ss_pred             EEEEECCCcchHHHHHHHHHC--CC-eeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcC-CC
Q psy9056         222 TVAVLGAGLMGAGIAHVTVDK--GY-NTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYD-PF  297 (359)
Q Consensus       222 kI~IIG~G~mG~~iA~~l~~~--G~-~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~l  297 (359)
                      +|+|||+|.+|..+...+...  .+ -|.+||++.++...+....                      .. ...++++ .+
T Consensus         2 ~vgiVGcGaIG~~l~e~v~~~~~~~e~v~v~D~~~ek~~~~~~~~----------------------~~-~~~s~ide~~   58 (255)
T COG1712           2 KVGIVGCGAIGKFLLELVRDGRVDFELVAVYDRDEEKAKELEASV----------------------GR-RCVSDIDELI   58 (255)
T ss_pred             eEEEEeccHHHHHHHHHHhcCCcceeEEEEecCCHHHHHHHHhhc----------------------CC-CccccHHHHh
Confidence            799999999999998877544  24 4889999999866543211                      11 1225564 45


Q ss_pred             CCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCC
Q psy9056         298 KNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTS  336 (359)
Q Consensus       298 ~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts  336 (359)
                      ++.|+++||..  .+..++...++.+. +-|+||+|...
T Consensus        59 ~~~DlvVEaAS--~~Av~e~~~~~L~~-g~d~iV~SVGA   94 (255)
T COG1712          59 AEVDLVVEAAS--PEAVREYVPKILKA-GIDVIVMSVGA   94 (255)
T ss_pred             hccceeeeeCC--HHHHHHHhHHHHhc-CCCEEEEechh
Confidence            99999999995  44466666665543 45778877654

>TIGR00112 proC pyrroline-5-carboxylate reductase

Probab=97.59  E-value=0.00023  Score=65.60  Aligned_cols=82  Identities=18%  Similarity=0.222  Sum_probs=62.1

Q ss_pred             CeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CCCCCccEEEEcccCCHHHHHHHHHHHH
Q psy9056         244 YNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DPFKNADMVIEAVFEDINIKHQVIKEIE  322 (359)
Q Consensus       244 ~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~l~~aD~Vi~avp~~~~~k~~v~~~l~  322 (359)
                      ++|++++|++++++...+.+                       .++..++. +.+.++|+||+|++  +....+++.++.
T Consensus        10 ~~I~v~~R~~e~~~~l~~~~-----------------------g~~~~~~~~e~~~~aDiIiLaVk--P~~i~~vl~~l~   64 (245)
T TIGR00112        10 YDIIVINRSPEKLAALAKEL-----------------------GIVASSDAQEAVKEADVVFLAVK--PQDLEEVLSELK   64 (245)
T ss_pred             CeEEEEcCCHHHHHHHHHHc-----------------------CcEEeCChHHHHhhCCEEEEEeC--HHHHHHHHHHHh
Confidence            68999999998866543211                       12223333 44688999999997  555788899998


Q ss_pred             HhCCCCcEEEEcCCCCcHHHHHhhcCCC
Q psy9056         323 AVVPPHCVVATNTSAIPITKIAAASKRP  350 (359)
Q Consensus       323 ~~~~~~~ii~s~ts~~~~~~l~~~~~~~  350 (359)
                      .++.++++|+|...+++++++.+.++..
T Consensus        65 ~~~~~~~~ivS~~agi~~~~l~~~~~~~   92 (245)
T TIGR00112        65 SEKGKDKLLISIAAGVTLEKLSQLLGGT   92 (245)
T ss_pred             hhccCCCEEEEecCCCCHHHHHHHcCCC
Confidence            8777788999999999999999988643

This enzyme catalyzes the final step in proline biosynthesis. Among the four paralogs in Bacillus subtilis (proG, proH, proI, and comER), ComER is the most divergent and does not prevent proline auxotrophy from mutation of the other three. It is excluded from the seed and scores between the trusted and noise cutoffs.

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=97.59  E-value=0.00036  Score=68.94  Aligned_cols=86  Identities=17%  Similarity=0.117  Sum_probs=61.0

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcCCCCCc
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPFKNA  300 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~a  300 (359)
                      ++|+|+|+|.+|..++..+...|.+|+++|+++.+++.+..           .|.             ......+.+..+
T Consensus       203 ktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~-----------~G~-------------~~~~~~e~v~~a  258 (413)
T cd00401         203 KVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAAM-----------EGY-------------EVMTMEEAVKEG  258 (413)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHHh-----------cCC-------------EEccHHHHHcCC
Confidence            68999999999999999999999999999999988665432           111             000001345678


Q ss_pred             cEEEEcccCCHHHHHHHHH-HHHHhCCCCcEEEEcC
Q psy9056         301 DMVIEAVFEDINIKHQVIK-EIEAVVPPHCVVATNT  335 (359)
Q Consensus       301 D~Vi~avp~~~~~k~~v~~-~l~~~~~~~~ii~s~t  335 (359)
                      |+||+|+....     ++. ...+.++++.+++..+
T Consensus       259 DVVI~atG~~~-----~i~~~~l~~mk~GgilvnvG  289 (413)
T cd00401         259 DIFVTTTGNKD-----IITGEHFEQMKDGAIVCNIG  289 (413)
T ss_pred             CEEEECCCCHH-----HHHHHHHhcCCCCcEEEEeC
Confidence            99999986332     333 3455678888876554

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=97.59  E-value=7.5e-05  Score=62.42  Aligned_cols=76  Identities=17%  Similarity=0.183  Sum_probs=54.3

Q ss_pred             CccEEEEECCCcchHHHHHHHHHCCCe-eEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CC
Q psy9056         219 PVKTVAVLGAGLMGAGIAHVTVDKGYN-TIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DP  296 (359)
Q Consensus       219 ~~~kI~IIG~G~mG~~iA~~l~~~G~~-V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~  296 (359)
                      +-++|.|||+|-+|.+++..+...|.. |++++|+.++++...+.+.        ...+          .....++. +.
T Consensus        11 ~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~~--------~~~~----------~~~~~~~~~~~   72 (135)
T PF01488_consen   11 KGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEEFG--------GVNI----------EAIPLEDLEEA   72 (135)
T ss_dssp             TTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHHT--------GCSE----------EEEEGGGHCHH
T ss_pred             CCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHcC--------cccc----------ceeeHHHHHHH
Confidence            348999999999999999999999986 9999999998777654331        0000          01112222 34


Q ss_pred             CCCccEEEEcccCCHH
Q psy9056         297 FKNADMVIEAVFEDIN  312 (359)
Q Consensus       297 l~~aD~Vi~avp~~~~  312 (359)
                      +.++|+||.|+|....
T Consensus        73 ~~~~DivI~aT~~~~~   88 (135)
T PF01488_consen   73 LQEADIVINATPSGMP   88 (135)
T ss_dssp             HHTESEEEE-SSTTST
T ss_pred             HhhCCeEEEecCCCCc
Confidence            6889999999987653

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases

Probab=97.57  E-value=0.00085  Score=66.97  Aligned_cols=122  Identities=17%  Similarity=0.209  Sum_probs=76.5

Q ss_pred             cEEEEECCCcc-hHHHHHHHHHC-----CCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc
Q psy9056         221 KTVAVLGAGLM-GAGIAHVTVDK-----GYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY  294 (359)
Q Consensus       221 ~kI~IIG~G~m-G~~iA~~l~~~-----G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~  294 (359)
                      +||+|||+|+. +..+...+.+.     +-+|+++|+|+++++....-.+    +..+....+        -++..|+|.
T Consensus         1 ~KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~DId~~rl~~v~~l~~----~~~~~~g~~--------~~v~~Ttdr   68 (437)
T cd05298           1 FKIVIAGGGSTYTPGIVKSLLDRKEDFPLRELVLYDIDAERQEKVAEAVK----ILFKENYPE--------IKFVYTTDP   68 (437)
T ss_pred             CeEEEECCcHHHHHHHHHHHHhCcccCCCCEEEEECCCHHHHHHHHHHHH----HHHHhhCCC--------eEEEEECCH
Confidence            48999999874 22334445444     3589999999999887443333    222221111        146678887


Q ss_pred             -CCCCCccEEEEcccC----------------------------------CHHHHHHHHHHHHHhCCCCcEEEEcCCCCc
Q psy9056         295 -DPFKNADMVIEAVFE----------------------------------DINIKHQVIKEIEAVVPPHCVVATNTSAIP  339 (359)
Q Consensus       295 -~~l~~aD~Vi~avp~----------------------------------~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~  339 (359)
                       +++.+||+||.++-.                                  +..+..++.+.|.+++ |+.++++.|+...
T Consensus        69 ~eAl~gADfVi~~irvGg~~~r~~De~Ip~kyGi~gqET~G~GG~~~alRtip~~~~i~~~i~~~~-pda~lin~tNP~~  147 (437)
T cd05298          69 EEAFTDADFVFAQIRVGGYAMREQDEKIPLKHGVVGQETCGPGGFAYGLRSIGPMIELIDDIEKYS-PDAWILNYSNPAA  147 (437)
T ss_pred             HHHhCCCCEEEEEeeeCCchHHHHHHhHHHHcCcceecCccHHHHHHHHhhHHHHHHHHHHHHHHC-CCeEEEEecCcHH
Confidence             789999999965421                                  1225667888899987 5676666665544


Q ss_pred             H--HHHHhhcCCCCcEEee
Q psy9056         340 I--TKIAAASKRPDKVRNM  356 (359)
Q Consensus       340 ~--~~l~~~~~~~~rvig~  356 (359)
                      +  ..+... ....|++|+
T Consensus       148 ~vt~~~~~~-~~~~kviGl  165 (437)
T cd05298         148 IVAEALRRL-FPNARILNI  165 (437)
T ss_pred             HHHHHHHHH-CCCCCEEEE
Confidence            3  344434 334788884

Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas

>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type

Probab=97.57  E-value=0.00019  Score=69.08  Aligned_cols=94  Identities=9%  Similarity=0.011  Sum_probs=64.7

Q ss_pred             ccEEEEECCCcchHHHHHHHHH--CCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CC
Q psy9056         220 VKTVAVLGAGLMGAGIAHVTVD--KGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DP  296 (359)
Q Consensus       220 ~~kI~IIG~G~mG~~iA~~l~~--~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~  296 (359)
                      .++++|||+|.+|...+..+..  ...+|.+||+++++.+...+.+++       .+           -.+...++. +.
T Consensus       128 ~~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~r~~~~~~~~~~~~~~-------~g-----------~~v~~~~~~~ea  189 (325)
T TIGR02371       128 SSVLGIIGAGRQAWTQLEALSRVFDLEEVSVYCRTPSTREKFALRASD-------YE-----------VPVRAATDPREA  189 (325)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHh-------hC-----------CcEEEeCCHHHH
Confidence            4789999999999997666544  345899999999998776544321       01           013334455 56


Q ss_pred             CCCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCC
Q psy9056         297 FKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSA  337 (359)
Q Consensus       297 l~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~  337 (359)
                      +++||+|+.|+|...    .++.  .+.+++++.|....+.
T Consensus       190 v~~aDiVitaT~s~~----P~~~--~~~l~~g~~v~~vGs~  224 (325)
T TIGR02371       190 VEGCDILVTTTPSRK----PVVK--ADWVSEGTHINAIGAD  224 (325)
T ss_pred             hccCCEEEEecCCCC----cEec--HHHcCCCCEEEecCCC
Confidence            899999999998755    3332  2346788887666554

This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.

>KOG0069|consensus

Probab=97.56  E-value=0.00023  Score=67.91  Aligned_cols=105  Identities=17%  Similarity=0.128  Sum_probs=73.7

Q ss_pred             CCccEEEEECCCcchHHHHHHHHHCCCeeEEe-cCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcCC
Q psy9056         218 TPVKTVAVLGAGLMGAGIAHVTVDKGYNTIVK-DSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDP  296 (359)
Q Consensus       218 ~~~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~-d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  296 (359)
                      -.-++|+|+|+|.+|..+|..|...| .++.| .|++..-+...+...                        ...+..+.
T Consensus       160 ~~gK~vgilG~G~IG~~ia~rL~~Fg-~~i~y~~r~~~~~~~~~~~~~------------------------~~~d~~~~  214 (336)
T KOG0069|consen  160 LEGKTVGILGLGRIGKAIAKRLKPFG-CVILYHSRTQLPPEEAYEYYA------------------------EFVDIEEL  214 (336)
T ss_pred             ccCCEEEEecCcHHHHHHHHhhhhcc-ceeeeecccCCchhhHHHhcc------------------------cccCHHHH
Confidence            34579999999999999999999999 55555 555544333222110                        12222356


Q ss_pred             CCCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCcH--HHHHhhc
Q psy9056         297 FKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPI--TKIAAAS  347 (359)
Q Consensus       297 l~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~--~~l~~~~  347 (359)
                      +.++|+|++|.|-+.+...-+-++....++++.+|++..-|--+  ..+.+.+
T Consensus       215 ~~~sD~ivv~~pLt~~T~~liNk~~~~~mk~g~vlVN~aRG~iide~~l~eaL  267 (336)
T KOG0069|consen  215 LANSDVIVVNCPLTKETRHLINKKFIEKMKDGAVLVNTARGAIIDEEALVEAL  267 (336)
T ss_pred             HhhCCEEEEecCCCHHHHHHhhHHHHHhcCCCeEEEeccccccccHHHHHHHH
Confidence            89999999999999987777778888899999998876655333  3444443

>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]

Probab=97.55  E-value=0.00018  Score=68.91  Aligned_cols=103  Identities=15%  Similarity=0.134  Sum_probs=72.1

Q ss_pred             ccEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CCCC
Q psy9056         220 VKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DPFK  298 (359)
Q Consensus       220 ~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~l~  298 (359)
                      =+++||||.|.+|..+|+.+..-|-+|..||+++. -+. ...                       .+..... + +.++
T Consensus       146 gktvGIiG~GrIG~avA~r~~~Fgm~v~y~~~~~~-~~~-~~~-----------------------~~~~y~~-l~ell~  199 (324)
T COG1052         146 GKTLGIIGLGRIGQAVARRLKGFGMKVLYYDRSPN-PEA-EKE-----------------------LGARYVD-LDELLA  199 (324)
T ss_pred             CCEEEEECCCHHHHHHHHHHhcCCCEEEEECCCCC-hHH-Hhh-----------------------cCceecc-HHHHHH
Confidence            47999999999999999999977889999999974 111 000                       0011222 3 5689


Q ss_pred             CccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCcH--HHHHhhcC
Q psy9056         299 NADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPI--TKIAAASK  348 (359)
Q Consensus       299 ~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~--~~l~~~~~  348 (359)
                      .||+|++.+|-..+...-+=++..+.++++.+|+..+-|--+  ..+.+.+.
T Consensus       200 ~sDii~l~~Plt~~T~hLin~~~l~~mk~ga~lVNtaRG~~VDe~ALi~AL~  251 (324)
T COG1052         200 ESDIISLHCPLTPETRHLINAEELAKMKPGAILVNTARGGLVDEQALIDALK  251 (324)
T ss_pred             hCCEEEEeCCCChHHhhhcCHHHHHhCCCCeEEEECCCccccCHHHHHHHHH
Confidence            999999999988886555556677778998888755544333  34444443

>PRK05225 ketol-acid reductoisomerase; Validated

Probab=97.54  E-value=8.7e-05  Score=73.17  Aligned_cols=86  Identities=13%  Similarity=0.213  Sum_probs=63.7

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCCeeE------EecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGYNTI------VKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY  294 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~~V~------l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~  294 (359)
                      ++|+|||.|.+|...|..+.-.|++|+      .+|.+...-+.+.           +             +.+.+.+..
T Consensus        37 KtIaIIGyGSqG~AqAlNLrdSGvnVvvglr~~~id~~~~s~~kA~-----------~-------------dGF~v~~~~   92 (487)
T PRK05225         37 KKIVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKAT-----------E-------------NGFKVGTYE   92 (487)
T ss_pred             CEEEEEccCHHHHHHhCCCccccceeEEeccccccccccchHHHHH-----------h-------------cCCccCCHH
Confidence            799999999999999999999999988      3443333322211           1             112232222


Q ss_pred             CCCCCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEE
Q psy9056         295 DPFKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVA  332 (359)
Q Consensus       295 ~~l~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~  332 (359)
                      ++++.||+|+..+|+..  ...+++++.++++++..+.
T Consensus        93 Ea~~~ADvVviLlPDt~--q~~v~~~i~p~LK~Ga~L~  128 (487)
T PRK05225         93 ELIPQADLVINLTPDKQ--HSDVVRAVQPLMKQGAALG  128 (487)
T ss_pred             HHHHhCCEEEEcCChHH--HHHHHHHHHhhCCCCCEEE
Confidence            66899999999999884  6688899999999999875

>TIGR00936 ahcY adenosylhomocysteinase

Probab=97.52  E-value=0.00033  Score=69.00  Aligned_cols=97  Identities=24%  Similarity=0.160  Sum_probs=65.5

Q ss_pred             ccEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcCCCCC
Q psy9056         220 VKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPFKN  299 (359)
Q Consensus       220 ~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~  299 (359)
                      -++|+|+|.|.+|..+|..+...|.+|+++|+++.+...+..           .|             ..+.+..+.+..
T Consensus       195 Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~~-----------~G-------------~~v~~leeal~~  250 (406)
T TIGR00936       195 GKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIRALEAAM-----------DG-------------FRVMTMEEAAKI  250 (406)
T ss_pred             cCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhhHHHHHh-----------cC-------------CEeCCHHHHHhc
Confidence            468999999999999999999999999999999876433221           11             111111134678


Q ss_pred             ccEEEEcccCCHHHHHHHHH-HHHHhCCCCcEEEEcCCC---CcHHHHHh
Q psy9056         300 ADMVIEAVFEDINIKHQVIK-EIEAVVPPHCVVATNTSA---IPITKIAA  345 (359)
Q Consensus       300 aD~Vi~avp~~~~~k~~v~~-~l~~~~~~~~ii~s~ts~---~~~~~l~~  345 (359)
                      +|+||.++.. .    .++. +....++++.+|+..+.+   +....+.+
T Consensus       251 aDVVItaTG~-~----~vI~~~~~~~mK~GailiN~G~~~~eId~~aL~~  295 (406)
T TIGR00936       251 GDIFITATGN-K----DVIRGEHFENMKDGAIVANIGHFDVEIDVKALEE  295 (406)
T ss_pred             CCEEEECCCC-H----HHHHHHHHhcCCCCcEEEEECCCCceeCHHHHHH
Confidence            9999998753 2    3333 355677889988765442   44455544

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.52  E-value=0.00025  Score=66.96  Aligned_cols=93  Identities=15%  Similarity=0.166  Sum_probs=67.3

Q ss_pred             ChhhHHHHHhHhhhhhhhhcCCCCCCCCccEEEEEC-CCcchHHHHHHHHHCCCeeEEec-CCHHHHHHHHHHHHHhHHH
Q psy9056         192 TPQSKGLMGLFRAQTECKKNRLGKPQTPVKTVAVLG-AGLMGAGIAHVTVDKGYNTIVKD-SFEKGLARGLGQIKTGLDG  269 (359)
Q Consensus       192 s~~~~~~~~af~~k~~~~~~~~~~~~~~~~kI~IIG-~G~mG~~iA~~l~~~G~~V~l~d-~~~~~l~~~~~~~~~~l~~  269 (359)
                      -|-+..++-.+++....        +..=++|+||| .|.||.+||..|.++|++|++|+ ++++ ++            
T Consensus       138 ~PcTp~ai~~ll~~~~i--------~~~Gk~V~viGrs~~mG~PmA~~L~~~g~tVtv~~~rT~~-l~------------  196 (296)
T PRK14188        138 VPCTPLGCMMLLRRVHG--------DLSGLNAVVIGRSNLVGKPMAQLLLAANATVTIAHSRTRD-LP------------  196 (296)
T ss_pred             cCCCHHHHHHHHHHhCC--------CCCCCEEEEEcCCcchHHHHHHHHHhCCCEEEEECCCCCC-HH------------
Confidence            35556777777776542        12337999999 89999999999999999999995 5542 10            


Q ss_pred             HHhhccCChHHHHhhhcccccccCcCCCCCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCC
Q psy9056         270 AVKRKKMSALDRDRYLASLVGTLSYDPFKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSA  337 (359)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~  337 (359)
                                               +.++.||+||.|++....+...       +++++++|++.+..
T Consensus       197 -------------------------e~~~~ADIVIsavg~~~~v~~~-------~lk~GavVIDvGin  232 (296)
T PRK14188        197 -------------------------AVCRRADILVAAVGRPEMVKGD-------WIKPGATVIDVGIN  232 (296)
T ss_pred             -------------------------HHHhcCCEEEEecCChhhcchh-------eecCCCEEEEcCCc
Confidence                                     2367899999999865533222       27789998876543

>PF13766 ECH_C: 2-enoyl-CoA Hydratase C-terminal region; PDB: 3JU1_A 3BPT_A

Probab=97.49  E-value=0.00019  Score=58.59  Aligned_cols=71  Identities=11%  Similarity=-0.040  Sum_probs=55.1

Q ss_pred             HHHHHHHHHHHHhhCCCCCcHHHHHHHHHHhhccChhhHHHHHHHHhhhhhcChhhHHHHHh-Hhhhh-hhhh
Q psy9056         140 QIFGKAKEKVMKMSGGLYPAPLKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGL-FRAQT-ECKK  210 (359)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~s~~~~~~~~a-f~~k~-~~~~  210 (359)
                      ....++...+.....+++.+...+.++++++...++++++++|++...+++.++||.|||++ .++|. +|++
T Consensus        28 ~~~~~a~~~~~~l~~~SP~Sl~vt~~~l~~~~~~sl~e~l~~E~~~a~~~~~~~DF~EGVRA~LIDKd~~P~W  100 (118)
T PF13766_consen   28 DGDEWAQKTLETLRSGSPLSLKVTFEQLRRGRNLSLAECLRMEYRLASRCMRHPDFAEGVRALLIDKDKNPKW  100 (118)
T ss_dssp             HS-HHHHHHHHHHCCS-HHHHHHHHHHHHCCTTS-HHHHHHHHHHHHHHHHCCSCHHHHHHHHTTS-------
T ss_pred             cCcHHHHHHHHHHHHCCHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHhccchHHHHHHHHHhcCCCCCCC
Confidence            34456777777778888899999999999999999999999999999999999999999997 55564 4444

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=97.46  E-value=0.00046  Score=68.42  Aligned_cols=87  Identities=20%  Similarity=0.135  Sum_probs=61.3

Q ss_pred             ccEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CCCC
Q psy9056         220 VKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DPFK  298 (359)
Q Consensus       220 ~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~l~  298 (359)
                      =++|+|+|.|.+|..+|..+...|.+|+++|+++.+...+..           .|             ..+. +. +.+.
T Consensus       212 Gk~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~~A~~-----------~G-------------~~v~-~l~eal~  266 (425)
T PRK05476        212 GKVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPICALQAAM-----------DG-------------FRVM-TMEEAAE  266 (425)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCchhhHHHHh-----------cC-------------CEec-CHHHHHh
Confidence            368999999999999999999999999999999876443211           01             1111 11 3467


Q ss_pred             CccEEEEcccCCHHHHHHHHH-HHHHhCCCCcEEEEcCC
Q psy9056         299 NADMVIEAVFEDINIKHQVIK-EIEAVVPPHCVVATNTS  336 (359)
Q Consensus       299 ~aD~Vi~avp~~~~~k~~v~~-~l~~~~~~~~ii~s~ts  336 (359)
                      .+|+||.++.. .    .++. +....++++.++++.+.
T Consensus       267 ~aDVVI~aTG~-~----~vI~~~~~~~mK~GailiNvG~  300 (425)
T PRK05476        267 LGDIFVTATGN-K----DVITAEHMEAMKDGAILANIGH  300 (425)
T ss_pred             CCCEEEECCCC-H----HHHHHHHHhcCCCCCEEEEcCC
Confidence            89999998843 2    2343 45556788998876553

>cd01487 E1_ThiF_like E1_ThiF_like

Probab=97.44  E-value=0.00037  Score=60.86  Aligned_cols=95  Identities=21%  Similarity=0.221  Sum_probs=57.2

Q ss_pred             EEEEECCCcchHHHHHHHHHCCC-eeEEecCCH---HHHHHHHHHHHHhHHHHHhhccCChHHHHhhhccc----cc---
Q psy9056         222 TVAVLGAGLMGAGIAHVTVDKGY-NTIVKDSFE---KGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASL----VG---  290 (359)
Q Consensus       222 kI~IIG~G~mG~~iA~~l~~~G~-~V~l~d~~~---~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i----~~---  290 (359)
                      +|.|||+|.+|+.++..+++.|. +++++|.+.   +.+.+..-     ....  -|+.........+.++    .+   
T Consensus         1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~v~~sNl~Rq~~-----~~~~--vg~~Ka~~~~~~l~~lnp~v~i~~~   73 (174)
T cd01487           1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDVVEPSNLNRQQY-----FLSQ--IGEPKVEALKENLREINPFVKIEAI   73 (174)
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEEcCcchhcccc-----cHhh--CCChHHHHHHHHHHHHCCCCEEEEE
Confidence            58999999999999999999998 599999886   33221110     0011  1111111111212111    11   


Q ss_pred             ----cc-Cc-CCCCCccEEEEcccCCHHHHHHHHHHHHHh
Q psy9056         291 ----TL-SY-DPFKNADMVIEAVFEDINIKHQVIKEIEAV  324 (359)
Q Consensus       291 ----~~-~~-~~l~~aD~Vi~avp~~~~~k~~v~~~l~~~  324 (359)
                          .. +. +.++++|+||+| .++.+.+..+.+...+.
T Consensus        74 ~~~~~~~~~~~~l~~~DlVi~~-~d~~~~r~~i~~~~~~~  112 (174)
T cd01487          74 NIKIDENNLEGLFGDCDIVVEA-FDNAETKAMLAESLLGN  112 (174)
T ss_pred             EeecChhhHHHHhcCCCEEEEC-CCCHHHHHHHHHHHHHH
Confidence                01 11 346889999999 55777777677776665

Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=97.42  E-value=0.00026  Score=69.13  Aligned_cols=96  Identities=22%  Similarity=0.249  Sum_probs=63.7

Q ss_pred             ccEEEEECCCcchHHHHHHHHHCC-CeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhccccccc--Cc-C
Q psy9056         220 VKTVAVLGAGLMGAGIAHVTVDKG-YNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTL--SY-D  295 (359)
Q Consensus       220 ~~kI~IIG~G~mG~~iA~~l~~~G-~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~--~~-~  295 (359)
                      |++|.|||+|.+|+.+|..++++| .+|++.||+.++++++......         ++...       .+...+  .+ +
T Consensus         1 m~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~---------~v~~~-------~vD~~d~~al~~   64 (389)
T COG1748           1 MMKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGG---------KVEAL-------QVDAADVDALVA   64 (389)
T ss_pred             CCcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccc---------cceeE-------EecccChHHHHH
Confidence            579999999999999999999999 8999999999988876543211         11000       000010  11 3


Q ss_pred             CCCCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCC
Q psy9056         296 PFKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTS  336 (359)
Q Consensus       296 ~l~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts  336 (359)
                      .+++.|+||.|+|-..+.  .+++...   ..++-+++.+.
T Consensus        65 li~~~d~VIn~~p~~~~~--~i~ka~i---~~gv~yvDts~  100 (389)
T COG1748          65 LIKDFDLVINAAPPFVDL--TILKACI---KTGVDYVDTSY  100 (389)
T ss_pred             HHhcCCEEEEeCCchhhH--HHHHHHH---HhCCCEEEccc
Confidence            568889999999977754  4444332   33554544444

>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain

Probab=97.42  E-value=0.0006  Score=55.68  Aligned_cols=99  Identities=17%  Similarity=0.241  Sum_probs=60.3

Q ss_pred             EEEEECC-CcchHHHHHHHHHC-CCeeEEe-cCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcCCC-
Q psy9056         222 TVAVLGA-GLMGAGIAHVTVDK-GYNTIVK-DSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPF-  297 (359)
Q Consensus       222 kI~IIG~-G~mG~~iA~~l~~~-G~~V~l~-d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l-  297 (359)
                      ||+|+|+ |.+|..++..+... +++|..+ +++.+..+....          ..+.+..        .+...-+.+.+ 
T Consensus         1 ki~iiG~~g~~g~~~~~~l~~~~~~~l~av~~~~~~~~~~~~~----------~~~~~~~--------~~~~~~~~~~~~   62 (122)
T smart00859        1 KVAIVGATGYVGQELLRLLAEHPDFEVVALAASARSAGKRVSE----------AGPHLKG--------EVVLELEPEDFE   62 (122)
T ss_pred             CEEEECCCChHHHHHHHHHhcCCCceEEEEEechhhcCcCHHH----------HCccccc--------ccccccccCChh
Confidence            6899995 99999999999885 7777666 544322111111          0000000        00000111222 


Q ss_pred             -CCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCcH
Q psy9056         298 -KNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPI  340 (359)
Q Consensus       298 -~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~  340 (359)
                       .++|+||.|+|.+...  .+...+...+.++++++++++.+..
T Consensus        63 ~~~~DvV~~~~~~~~~~--~~~~~~~~~~~~g~~viD~s~~~~~  104 (122)
T smart00859       63 ELAVDIVFLALPHGVSK--EIAPLLPKAAEAGVKVIDLSSAFRM  104 (122)
T ss_pred             hcCCCEEEEcCCcHHHH--HHHHHHHhhhcCCCEEEECCccccC
Confidence             5899999999988754  5444555567889999999887653

The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.

>PRK08618 ornithine cyclodeaminase; Validated

Probab=97.41  E-value=0.00061  Score=65.53  Aligned_cols=93  Identities=13%  Similarity=0.139  Sum_probs=64.6

Q ss_pred             ccEEEEECCCcchHHHHHHHHH-CCC-eeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CC
Q psy9056         220 VKTVAVLGAGLMGAGIAHVTVD-KGY-NTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DP  296 (359)
Q Consensus       220 ~~kI~IIG~G~mG~~iA~~l~~-~G~-~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~  296 (359)
                      -++|+|||+|.+|...+..++. .+. +|.+||+++++.++..+.++...      +           -.+...++. +.
T Consensus       127 ~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~~~~------~-----------~~~~~~~~~~~~  189 (325)
T PRK08618        127 AKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQSKF------N-----------TEIYVVNSADEA  189 (325)
T ss_pred             CcEEEEECCcHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhc------C-----------CcEEEeCCHHHH
Confidence            4789999999999998877654 343 89999999998877655443210      0           012223444 46


Q ss_pred             CCCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCC
Q psy9056         297 FKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTS  336 (359)
Q Consensus       297 l~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts  336 (359)
                      +.++|+|+.|+|...    .++.   +.+++++.|....+
T Consensus       190 ~~~aDiVi~aT~s~~----p~i~---~~l~~G~hV~~iGs  222 (325)
T PRK08618        190 IEEADIIVTVTNAKT----PVFS---EKLKKGVHINAVGS  222 (325)
T ss_pred             HhcCCEEEEccCCCC----cchH---HhcCCCcEEEecCC
Confidence            789999999999764    3343   35688888876654

>PRK12549 shikimate 5-dehydrogenase; Reviewed

Probab=97.41  E-value=0.00038  Score=65.67  Aligned_cols=74  Identities=22%  Similarity=0.215  Sum_probs=53.7

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCC-eeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CCCC
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGY-NTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DPFK  298 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~-~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~l~  298 (359)
                      ++|.|||+|..|.+++..++..|. +|+++||+.++.+...+.+.+....                ..+....+. +.+.
T Consensus       128 k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~~ka~~la~~l~~~~~~----------------~~~~~~~~~~~~~~  191 (284)
T PRK12549        128 ERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDPARAAALADELNARFPA----------------ARATAGSDLAAALA  191 (284)
T ss_pred             CEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhCCC----------------eEEEeccchHhhhC
Confidence            789999999999999999999998 7999999999887765544321100                011111222 3568


Q ss_pred             CccEEEEcccCC
Q psy9056         299 NADMVIEAVFED  310 (359)
Q Consensus       299 ~aD~Vi~avp~~  310 (359)
                      ++|+||.|+|..
T Consensus       192 ~aDiVInaTp~G  203 (284)
T PRK12549        192 AADGLVHATPTG  203 (284)
T ss_pred             CCCEEEECCcCC
Confidence            899999998754

>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot

Probab=97.40  E-value=0.00094  Score=53.99  Aligned_cols=96  Identities=15%  Similarity=0.160  Sum_probs=61.4

Q ss_pred             EEEEECCCcchHHHHHHHHHC--CCee-EEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcC-CC
Q psy9056         222 TVAVLGAGLMGAGIAHVTVDK--GYNT-IVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYD-PF  297 (359)
Q Consensus       222 kI~IIG~G~mG~~iA~~l~~~--G~~V-~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~l  297 (359)
                      ||+|||+|.+|......+.+.  +.+| .++|+++++.+...+..                       .+...+|++ .+
T Consensus         2 ~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~~-----------------------~~~~~~~~~~ll   58 (120)
T PF01408_consen    2 RVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAEKY-----------------------GIPVYTDLEELL   58 (120)
T ss_dssp             EEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHT-----------------------TSEEESSHHHHH
T ss_pred             EEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHHHh-----------------------cccchhHHHHHH
Confidence            799999999999999888887  3454 57899998866543211                       122344443 33


Q ss_pred             --CCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCcHHHHH
Q psy9056         298 --KNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPITKIA  344 (359)
Q Consensus       298 --~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~l~  344 (359)
                        .+.|+|++++|.....  ++.....+.-.  -+++--.-....++..
T Consensus        59 ~~~~~D~V~I~tp~~~h~--~~~~~~l~~g~--~v~~EKP~~~~~~~~~  103 (120)
T PF01408_consen   59 ADEDVDAVIIATPPSSHA--EIAKKALEAGK--HVLVEKPLALTLEEAE  103 (120)
T ss_dssp             HHTTESEEEEESSGGGHH--HHHHHHHHTTS--EEEEESSSSSSHHHHH
T ss_pred             HhhcCCEEEEecCCcchH--HHHHHHHHcCC--EEEEEcCCcCCHHHHH
Confidence              3799999999987743  55555544311  3554433344444433

GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....

>PRK04148 hypothetical protein; Provisional

Probab=97.39  E-value=0.00062  Score=56.59  Aligned_cols=99  Identities=19%  Similarity=0.271  Sum_probs=66.7

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcCCCCCc
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPFKNA  300 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~a  300 (359)
                      ++|.+||+| -|..+|..|.+.|++|+.+|.+++.++.+.....+.                 ..+.+ +..+.+--+++
T Consensus        18 ~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~~~~~-----------------v~dDl-f~p~~~~y~~a   78 (134)
T PRK04148         18 KKIVELGIG-FYFKVAKKLKESGFDVIVIDINEKAVEKAKKLGLNA-----------------FVDDL-FNPNLEIYKNA   78 (134)
T ss_pred             CEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHHHHHHHHHhCCeE-----------------EECcC-CCCCHHHHhcC
Confidence            589999999 899999999999999999999999877654321000                 00001 12222346899


Q ss_pred             cEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCcH
Q psy9056         301 DMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPI  340 (359)
Q Consensus       301 D~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~  340 (359)
                      |+|...-|. .++ ..-+.++.+..+-+.+|...+...++
T Consensus        79 ~liysirpp-~el-~~~~~~la~~~~~~~~i~~l~~e~~~  116 (134)
T PRK04148         79 KLIYSIRPP-RDL-QPFILELAKKINVPLIIKPLSGEEPI  116 (134)
T ss_pred             CEEEEeCCC-HHH-HHHHHHHHHHcCCCEEEEcCCCCCCC
Confidence            999988873 333 34445677777777777655554433

>PTZ00075 Adenosylhomocysteinase; Provisional

Probab=97.37  E-value=0.00045  Score=69.04  Aligned_cols=88  Identities=20%  Similarity=0.169  Sum_probs=62.0

Q ss_pred             ccEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CCCC
Q psy9056         220 VKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DPFK  298 (359)
Q Consensus       220 ~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~l~  298 (359)
                      =++|+|+|.|.+|..+|..+...|.+|+++|+++.+...+..           .|             ... .++ +.++
T Consensus       254 GKtVgVIG~G~IGr~vA~rL~a~Ga~ViV~e~dp~~a~~A~~-----------~G-------------~~~-~~leell~  308 (476)
T PTZ00075        254 GKTVVVCGYGDVGKGCAQALRGFGARVVVTEIDPICALQAAM-----------EG-------------YQV-VTLEDVVE  308 (476)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhHHHHHh-----------cC-------------cee-ccHHHHHh
Confidence            379999999999999999999999999999999876432211           01             111 122 3478


Q ss_pred             CccEEEEcccCCHHHHHHHH-HHHHHhCCCCcEEEEcCCC
Q psy9056         299 NADMVIEAVFEDINIKHQVI-KEIEAVVPPHCVVATNTSA  337 (359)
Q Consensus       299 ~aD~Vi~avp~~~~~k~~v~-~~l~~~~~~~~ii~s~ts~  337 (359)
                      .+|+||.++. +    +.++ ++..+.++++.+|+..+-+
T Consensus       309 ~ADIVI~atG-t----~~iI~~e~~~~MKpGAiLINvGr~  343 (476)
T PTZ00075        309 TADIFVTATG-N----KDIITLEHMRRMKNNAIVGNIGHF  343 (476)
T ss_pred             cCCEEEECCC-c----ccccCHHHHhccCCCcEEEEcCCC
Confidence            8999999874 2    2344 3455567889988766544

>KOG2380|consensus

Probab=97.36  E-value=0.0011  Score=62.63  Aligned_cols=111  Identities=14%  Similarity=0.105  Sum_probs=69.5

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-C-CCC
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-D-PFK  298 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~-~l~  298 (359)
                      .+|+|||.|+||.=+|..+.++|+.|+..||++  -+.+...+..        +.               -+++ + +-+
T Consensus        53 l~IaIIGfGnmGqflAetli~aGh~li~hsRsd--yssaa~~yg~--------~~---------------ft~lhdlcer  107 (480)
T KOG2380|consen   53 LVIAIIGFGNMGQFLAETLIDAGHGLICHSRSD--YSSAAEKYGS--------AK---------------FTLLHDLCER  107 (480)
T ss_pred             eEEEEEecCcHHHHHHHHHHhcCceeEecCcch--hHHHHHHhcc--------cc---------------cccHHHHHhc
Confidence            689999999999999999999999999999987  2332222210        11               1112 2 236


Q ss_pred             CccEEEEcccCCHHHHHHHHHHHHHh-CCCCcEEEEcCCCCcHH--HHHhhcCCCCcEEeecC
Q psy9056         299 NADMVIEAVFEDINIKHQVIKEIEAV-VPPHCVVATNTSAIPIT--KIAAASKRPDKVRNMGR  358 (359)
Q Consensus       299 ~aD~Vi~avp~~~~~k~~v~~~l~~~-~~~~~ii~s~ts~~~~~--~l~~~~~~~~rvig~h~  358 (359)
                      ..|+|+.|+.  ..-...+++..-.. .+.++|++..+|....+  .+..-++..-.++-.|.
T Consensus       108 hpDvvLlcts--ilsiekilatypfqrlrrgtlfvdvlSvKefek~lfekYLPkdfDIlctHp  168 (480)
T KOG2380|consen  108 HPDVVLLCTS--ILSIEKILATYPFQRLRRGTLFVDVLSVKEFEKELFEKYLPKDFDILCTHP  168 (480)
T ss_pred             CCCEEEEEeh--hhhHHHHHHhcCchhhccceeEeeeeecchhHHHHHHHhCccccceEeecC
Confidence            7899999994  22233444433222 45678887777654433  34444444446666664

>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]

Probab=97.34  E-value=0.00054  Score=63.92  Aligned_cols=88  Identities=22%  Similarity=0.203  Sum_probs=65.4

Q ss_pred             ccEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcCCCCC
Q psy9056         220 VKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPFKN  299 (359)
Q Consensus       220 ~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~  299 (359)
                      -++|+|||.|+.|.+-|..+..+|++|++=-+.....          +++..+             +.+.+-+-.++++.
T Consensus        18 gK~iaIIGYGsQG~ahalNLRDSGlnViiGlr~g~~s----------~~kA~~-------------dGf~V~~v~ea~k~   74 (338)
T COG0059          18 GKKVAIIGYGSQGHAQALNLRDSGLNVIIGLRKGSSS----------WKKAKE-------------DGFKVYTVEEAAKR   74 (338)
T ss_pred             CCeEEEEecChHHHHHHhhhhhcCCcEEEEecCCchh----------HHHHHh-------------cCCEeecHHHHhhc
Confidence            3799999999999999999999999977665443321          111111             23443333477899


Q ss_pred             ccEEEEcccCCHHHHHHHHH-HHHHhCCCCcEEE
Q psy9056         300 ADMVIEAVFEDINIKHQVIK-EIEAVVPPHCVVA  332 (359)
Q Consensus       300 aD~Vi~avp~~~~~k~~v~~-~l~~~~~~~~ii~  332 (359)
                      +|+|++.+|+..  ..++++ +|.++++.+..+.
T Consensus        75 ADvim~L~PDe~--q~~vy~~~I~p~Lk~G~aL~  106 (338)
T COG0059          75 ADVVMILLPDEQ--QKEVYEKEIAPNLKEGAALG  106 (338)
T ss_pred             CCEEEEeCchhh--HHHHHHHHhhhhhcCCceEE
Confidence            999999999877  458887 7999999998764

>cd07022 S49_Sppa_36K_type Signal peptide peptidase A (SppA) 36K type, a serine protease, has catalytic Ser-Lys dyad

Probab=97.34  E-value=0.0004  Score=62.74  Aligned_cols=30  Identities=23%  Similarity=0.195  Sum_probs=25.5

Q ss_pred             CCCCchHHHHHHhcCEEEEecCCceEEecccc
Q psy9056           1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEV   32 (359)
Q Consensus         1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~   32 (359)
                      |+|.|||+.|+++||++++++.  +.|+...+
T Consensus        82 g~a~s~gy~lA~~aD~i~a~~~--a~~g~iG~  111 (214)
T cd07022          82 GLAASAAYWIASAADRIVVTPT--AGVGSIGV  111 (214)
T ss_pred             CchhhHHHHHHhcCCEEEEcCC--CeEEeeeE
Confidence            5789999999999999999988  88765443

Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 36K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily are all bacterial and include sohB peptidase and protein C. These are sometimes referred to as 36K type since they contain only one domain, unlike E. coli SppA that also contains an amino-terminal domain. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases.

>PRK13301 putative L-aspartate dehydrogenase; Provisional

Probab=97.34  E-value=0.00089  Score=61.91  Aligned_cols=87  Identities=10%  Similarity=0.058  Sum_probs=56.8

Q ss_pred             cEEEEECCCcchHHHHHHHHHCC---Ce-eEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcCC
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKG---YN-TIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDP  296 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G---~~-V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  296 (359)
                      .||+|||+|.||..++..+...+   ++ +.++++++++.+....                         .+...++++.
T Consensus         3 ~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~~~~~~~~~~~-------------------------~~~~~~~l~~   57 (267)
T PRK13301          3 HRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNAADLPPALAG-------------------------RVALLDGLPG   57 (267)
T ss_pred             eEEEEECccHHHHHHHHHHhcCCCCceEEEEEecCCHHHHHHhhc-------------------------cCcccCCHHH
Confidence            58999999999999999987643   44 4567888765443211                         1223445544


Q ss_pred             --CCCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcC
Q psy9056         297 --FKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNT  335 (359)
Q Consensus       297 --l~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~t  335 (359)
                        ....|+|+||..  .+..++.-..+... ..|.+++|.+
T Consensus        58 ll~~~~DlVVE~A~--~~av~e~~~~iL~~-g~dlvv~SvG   95 (267)
T PRK13301         58 LLAWRPDLVVEAAG--QQAIAEHAEGCLTA-GLDMIICSAG   95 (267)
T ss_pred             HhhcCCCEEEECCC--HHHHHHHHHHHHhc-CCCEEEEChh
Confidence              377999999995  44466666665543 3455665544

>TIGR00507 aroE shikimate 5-dehydrogenase

Probab=97.33  E-value=0.00038  Score=65.13  Aligned_cols=98  Identities=14%  Similarity=0.158  Sum_probs=62.3

Q ss_pred             ccEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcCCCCC
Q psy9056         220 VKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPFKN  299 (359)
Q Consensus       220 ~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~  299 (359)
                      -+++.|+|+|.+|.+++..++..|++|+++++++++.+...+.++.       .+..           .....+.....+
T Consensus       117 ~k~vliiGaGg~g~aia~~L~~~g~~v~v~~R~~~~~~~la~~~~~-------~~~~-----------~~~~~~~~~~~~  178 (270)
T TIGR00507       117 NQRVLIIGAGGAARAVALPLLKADCNVIIANRTVSKAEELAERFQR-------YGEI-----------QAFSMDELPLHR  178 (270)
T ss_pred             CCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhh-------cCce-----------EEechhhhcccC
Confidence            3689999999999999999999999999999999887665443321       0100           000111123467


Q ss_pred             ccEEEEcccCCHH--HHHHHHHHHHHhCCCCcEEEEcCCC
Q psy9056         300 ADMVIEAVFEDIN--IKHQVIKEIEAVVPPHCVVATNTSA  337 (359)
Q Consensus       300 aD~Vi~avp~~~~--~k~~v~~~l~~~~~~~~ii~s~ts~  337 (359)
                      +|+||.|+|....  .....+  ....++++.++++....
T Consensus       179 ~DivInatp~gm~~~~~~~~~--~~~~l~~~~~v~D~~y~  216 (270)
T TIGR00507       179 VDLIINATSAGMSGNIDEPPV--PAEKLKEGMVVYDMVYN  216 (270)
T ss_pred             ccEEEECCCCCCCCCCCCCCC--CHHHcCCCCEEEEeccC
Confidence            9999999986431  100001  12345677777765543

This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.

>PLN02494 adenosylhomocysteinase

Probab=97.32  E-value=0.00054  Score=68.34  Aligned_cols=97  Identities=15%  Similarity=0.141  Sum_probs=65.7

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CCCCC
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DPFKN  299 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~l~~  299 (359)
                      ++|+|+|.|.+|..+|..+...|.+|+++|+++.+...+..           .|             ..+. +. +.+..
T Consensus       255 KtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~r~~eA~~-----------~G-------------~~vv-~leEal~~  309 (477)
T PLN02494        255 KVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPICALQALM-----------EG-------------YQVL-TLEDVVSE  309 (477)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhHHHHh-----------cC-------------Ceec-cHHHHHhh
Confidence            78999999999999999999999999999999876433221           01             0011 12 34678


Q ss_pred             ccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCC---CCcHHHHHhh
Q psy9056         300 ADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTS---AIPITKIAAA  346 (359)
Q Consensus       300 aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts---~~~~~~l~~~  346 (359)
                      +|+||.+.....    .+..+..+.++++.+|++.+.   -+....+.+.
T Consensus       310 ADVVI~tTGt~~----vI~~e~L~~MK~GAiLiNvGr~~~eID~~aL~~~  355 (477)
T PLN02494        310 ADIFVTTTGNKD----IIMVDHMRKMKNNAIVCNIGHFDNEIDMLGLETY  355 (477)
T ss_pred             CCEEEECCCCcc----chHHHHHhcCCCCCEEEEcCCCCCccCHHHHhhc
Confidence            999998765322    223445557889998886655   2444555544

>KOG2666|consensus

Probab=97.32  E-value=0.00034  Score=65.44  Aligned_cols=112  Identities=22%  Similarity=0.269  Sum_probs=78.4

Q ss_pred             ccEEEEECCCcchHHHHHHHHHC--CCeeEEecCCHHHHHHHHHHH----HHhHHHHHhhccCChHHHHhhhcccccccC
Q psy9056         220 VKTVAVLGAGLMGAGIAHVTVDK--GYNTIVKDSFEKGLARGLGQI----KTGLDGAVKRKKMSALDRDRYLASLVGTLS  293 (359)
Q Consensus       220 ~~kI~IIG~G~mG~~iA~~l~~~--G~~V~l~d~~~~~l~~~~~~~----~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~  293 (359)
                      |.||+-||+|++|.+....++.+  ..+|+++|.+..++......-    +..++..++.         ..-.++.+++|
T Consensus         1 ~~kiccigagyvggptcavia~kcp~i~vtvvd~s~~ri~~wnsd~lpiyepgldevv~~---------crgknlffstd   71 (481)
T KOG2666|consen    1 MVKICCIGAGYVGGPTCAVIALKCPDIEVTVVDISVPRINAWNSDKLPIYEPGLDEVVKQ---------CRGKNLFFSTD   71 (481)
T ss_pred             CceEEEecCcccCCcchheeeecCCceEEEEEecCchHhhcccCCCCcccCCCHHHHHHH---------hcCCceeeecc
Confidence            57999999999999887666554  458999999999877654421    2222222211         11236788999


Q ss_pred             cC-CCCCccEEEEcccC-------------CHHHHHHHHHHHHHhCCCCcEEEEcCCCCcHH
Q psy9056         294 YD-PFKNADMVIEAVFE-------------DINIKHQVIKEIEAVVPPHCVVATNTSAIPIT  341 (359)
Q Consensus       294 ~~-~l~~aD~Vi~avp~-------------~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~  341 (359)
                      .+ .+.++|+||+++..             ++...++..+.|.++...+.|++ .-|++|+.
T Consensus        72 iekai~eadlvfisvntptkt~g~gkg~aadlky~es~ar~ia~~s~~~kivv-ekstvpv~  132 (481)
T KOG2666|consen   72 IEKAIKEADLVFISVNTPTKTYGLGKGKAADLKYWESAARMIADVSVSDKIVV-EKSTVPVK  132 (481)
T ss_pred             hHHHhhhcceEEEEecCCcccccCCCCcccchhHHHHHHHHHHHhccCCeEEE-eeccccch
Confidence            84 68999999998843             45566778888999988888875 44555553

>PRK07340 ornithine cyclodeaminase; Validated

Probab=97.31  E-value=0.00073  Score=64.39  Aligned_cols=92  Identities=12%  Similarity=0.040  Sum_probs=65.1

Q ss_pred             ccEEEEECCCcchHHHHHHHHH-CC-CeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CC
Q psy9056         220 VKTVAVLGAGLMGAGIAHVTVD-KG-YNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DP  296 (359)
Q Consensus       220 ~~kI~IIG~G~mG~~iA~~l~~-~G-~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~  296 (359)
                      -++|+|||+|.+|...+..+.. .+ .+|.+|++++++.+...+.++..       +.           .+. .++. +.
T Consensus       125 ~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~a~~~~~~-------~~-----------~~~-~~~~~~a  185 (304)
T PRK07340        125 PGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAASAAAFCAHARAL-------GP-----------TAE-PLDGEAI  185 (304)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhc-------CC-----------eeE-ECCHHHH
Confidence            3689999999999999999865 45 47999999999888765544310       00           011 2334 46


Q ss_pred             CCCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCC
Q psy9056         297 FKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSA  337 (359)
Q Consensus       297 l~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~  337 (359)
                      +.++|+||.|+|...    .++..   .+++++.|....+.
T Consensus       186 v~~aDiVitaT~s~~----Pl~~~---~~~~g~hi~~iGs~  219 (304)
T PRK07340        186 PEAVDLVVTATTSRT----PVYPE---AARAGRLVVAVGAF  219 (304)
T ss_pred             hhcCCEEEEccCCCC----ceeCc---cCCCCCEEEecCCC
Confidence            899999999998776    33432   25788877766553

>cd07019 S49_SppA_1 Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad

Probab=97.30  E-value=0.00018  Score=64.78  Aligned_cols=80  Identities=19%  Similarity=0.132  Sum_probs=50.3

Q ss_pred             CCCCchHHHHHHhcCEEEEecCCceEEeccc------------cCCCCCCCcc---hH--------------hHHhhhcC
Q psy9056           1 MFAEPSLATVALACHYRIVVKDKKTGLGLPE------------VMLGLLPGAG---GT--------------QRLPKLTA   51 (359)
Q Consensus         1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe------------~~~Gi~p~~g---~~--------------~~l~~~~g   51 (359)
                      |+|.|+|+.|+++||+++|+++  ++|+.--            .++|+-+..-   +.              ..+...+.
T Consensus        79 g~a~s~gy~la~~aD~i~a~~~--a~~gsiGv~~~~~~~~~~l~k~Gv~~~~~~~~g~~k~~~~~~~s~e~r~~~~~~ld  156 (211)
T cd07019          79 GAAASGGYWISTPANYIVANPS--TLTGSIGIFGVITTVENSLDSIGVHTDGVSTSPLADVSITRALPPEAQLGLQLSIE  156 (211)
T ss_pred             CeehhHHHHHHHhCCEEEEcCC--CEEEEeEEEEEcCCHHHHHHhcCCceEEEEecCcccCCCCCCCCHHHHHHHHHHHH
Confidence            5678999999999999999988  8886333            2233322110   00              00111111


Q ss_pred             ----------------hHHHHHHHhcCCCCCHHHHHHcCCcceecCC
Q psy9056          52 ----------------LPNVLDMTLTGKTLKADKAKKMGIVDQLVEP   82 (359)
Q Consensus        52 ----------------~~~a~~~~ltg~~~~a~eA~~~Glv~~~~~~   82 (359)
                                      .....+-+..|..+++++|++.||||++-.-
T Consensus       157 ~~~~~f~~~Va~~R~~~~~~l~~~~~~~~~~~~~A~~~GLvD~i~~~  203 (211)
T cd07019         157 NGYKRFITLVADARHSTPEQIDKIAQGHVWTGQDAKANGLVDSLGDF  203 (211)
T ss_pred             HHHHHHHHHHHhhCCCCHHHHHHhcCCcEEeHHHHHHcCCcccCCCH
Confidence                            0112233456788999999999999998875

Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppAs in this subfamily are found in all three domains of life and are involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members, the E. coli SppA contains an amino-te

>TIGR02992 ectoine_eutC ectoine utilization protein EutC

Probab=97.26  E-value=0.0009  Score=64.41  Aligned_cols=95  Identities=13%  Similarity=0.102  Sum_probs=64.7

Q ss_pred             cEEEEECCCcchHHHHHHHHH-CCC-eeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CCC
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVD-KGY-NTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DPF  297 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~-~G~-~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~l  297 (359)
                      ++++|||+|.+|...+..+.. .+. +|++|+|++++.+...+.+...+      +           -.+...++. +.+
T Consensus       130 ~~v~iiGaG~qA~~~~~al~~~~~i~~v~V~~R~~~~a~~~a~~~~~~~------g-----------~~v~~~~~~~~av  192 (326)
T TIGR02992       130 SVVAIFGAGMQARLQLEALTLVRDIRSARIWARDSAKAEALALQLSSLL------G-----------IDVTAATDPRAAM  192 (326)
T ss_pred             cEEEEECCCHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhhc------C-----------ceEEEeCCHHHHh
Confidence            689999999999999998873 564 79999999999887665443111      1           012223444 457


Q ss_pred             CCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCC
Q psy9056         298 KNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAI  338 (359)
Q Consensus       298 ~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~  338 (359)
                      .++|+|+.|+|....    ++.  .+.+++++.|....+..
T Consensus       193 ~~aDiVvtaT~s~~p----~i~--~~~l~~g~~i~~vg~~~  227 (326)
T TIGR02992       193 SGADIIVTTTPSETP----ILH--AEWLEPGQHVTAMGSDA  227 (326)
T ss_pred             ccCCEEEEecCCCCc----Eec--HHHcCCCcEEEeeCCCC
Confidence            899999999987553    222  12356777666554433

Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).

>PRK08644 thiamine biosynthesis protein ThiF; Provisional

Probab=97.26  E-value=0.00096  Score=60.18  Aligned_cols=32  Identities=31%  Similarity=0.357  Sum_probs=30.3

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCC-eeEEecCC
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGY-NTIVKDSF  252 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~-~V~l~d~~  252 (359)
                      .+|.|||+|.+|+.++..|++.|. +++++|.+
T Consensus        29 ~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D   61 (212)
T PRK08644         29 AKVGIAGAGGLGSNIAVALARSGVGNLKLVDFD   61 (212)
T ss_pred             CCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            689999999999999999999998 59999988

>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]

Probab=97.25  E-value=0.0012  Score=54.24  Aligned_cols=102  Identities=17%  Similarity=0.164  Sum_probs=60.2

Q ss_pred             cEEEEECC-CcchHHHHHHHHH-CCCe-eEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CC
Q psy9056         221 KTVAVLGA-GLMGAGIAHVTVD-KGYN-TIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DP  296 (359)
Q Consensus       221 ~kI~IIG~-G~mG~~iA~~l~~-~G~~-V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~  296 (359)
                      .||+|+|+ |.||..++..+.+ .|++ |-.+|++++....  +.+.    .....          ....+.+.+++ +.
T Consensus         1 mrV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g--~d~g----~~~~~----------~~~~~~v~~~l~~~   64 (124)
T PF01113_consen    1 MRVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVG--KDVG----ELAGI----------GPLGVPVTDDLEEL   64 (124)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTT--SBCH----HHCTS----------ST-SSBEBS-HHHH
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCccccc--chhh----hhhCc----------CCcccccchhHHHh
Confidence            38999999 9999999999999 6787 4556777621000  0000    00000          01234455666 44


Q ss_pred             CCCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCcHHHH
Q psy9056         297 FKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPITKI  343 (359)
Q Consensus       297 l~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~l  343 (359)
                      +..+|++|+..  .++.....++...++   +.-+++.|+|+.-+++
T Consensus        65 ~~~~DVvIDfT--~p~~~~~~~~~~~~~---g~~~ViGTTG~~~~~~  106 (124)
T PF01113_consen   65 LEEADVVIDFT--NPDAVYDNLEYALKH---GVPLVIGTTGFSDEQI  106 (124)
T ss_dssp             TTH-SEEEEES---HHHHHHHHHHHHHH---T-EEEEE-SSSHHHHH
T ss_pred             cccCCEEEEcC--ChHHhHHHHHHHHhC---CCCEEEECCCCCHHHH
Confidence            67799999988  455455555555544   6777788888876543

In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....

>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.25  E-value=0.00065  Score=63.68  Aligned_cols=93  Identities=16%  Similarity=0.194  Sum_probs=65.9

Q ss_pred             ChhhHHHHHhHhhhhhhhhcCCCCCCCCccEEEEECC-CcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHH
Q psy9056         192 TPQSKGLMGLFRAQTECKKNRLGKPQTPVKTVAVLGA-GLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGA  270 (359)
Q Consensus       192 s~~~~~~~~af~~k~~~~~~~~~~~~~~~~kI~IIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~  270 (359)
                      -|-+..++-.+++...-   +     -.=++|+|||. |.||.++|..|.++|+.|++|.....                
T Consensus       138 ~PcTp~avi~lL~~~~i---~-----l~Gk~v~vIG~S~ivG~Pla~lL~~~gatVtv~~s~t~----------------  193 (284)
T PRK14179        138 IPCTPAGIMEMFREYNV---E-----LEGKHAVVIGRSNIVGKPMAQLLLDKNATVTLTHSRTR----------------  193 (284)
T ss_pred             cCCCHHHHHHHHHHhCC---C-----CCCCEEEEECCCCcCcHHHHHHHHHCCCEEEEECCCCC----------------
Confidence            35566777777765432   1     12279999998 99999999999999999999942211                


Q ss_pred             HhhccCChHHHHhhhcccccccCc-CCCCCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCC
Q psy9056         271 VKRKKMSALDRDRYLASLVGTLSY-DPFKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSA  337 (359)
Q Consensus       271 ~~~~~~~~~~~~~~~~~i~~~~~~-~~l~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~  337 (359)
                                            ++ +.+++||+||.|++....+...       ++++++++++.+..
T Consensus       194 ----------------------~l~~~~~~ADIVI~avg~~~~v~~~-------~ik~GavVIDvgin  232 (284)
T PRK14179        194 ----------------------NLAEVARKADILVVAIGRGHFVTKE-------FVKEGAVVIDVGMN  232 (284)
T ss_pred             ----------------------CHHHHHhhCCEEEEecCccccCCHH-------HccCCcEEEEecce
Confidence                                  11 3478899999999855543332       37889998876543

>PRK00277 clpP ATP-dependent Clp protease proteolytic subunit; Reviewed

Probab=97.20  E-value=0.00055  Score=61.20  Aligned_cols=73  Identities=22%  Similarity=0.240  Sum_probs=48.3

Q ss_pred             CCCCchHHHHHHhcC--EEEEecCCceEEeccccCCCCCCCcchH----------------------hHHhhhcC--hHH
Q psy9056           1 MFAEPSLATVALACH--YRIVVKDKKTGLGLPEVMLGLLPGAGGT----------------------QRLPKLTA--LPN   54 (359)
Q Consensus         1 ~~a~GgG~~lalacD--~ria~~~~~~~~~~pe~~~Gi~p~~g~~----------------------~~l~~~~g--~~~   54 (359)
                      |.|.++|+.|+++++  .|++.         |+++++++++++++                      ..+....|  ...
T Consensus        98 G~aaS~a~~I~~ag~~~~r~~~---------p~s~imih~p~~~~~G~a~di~~~a~~l~~~~~~~~~~~a~~tg~~~~~  168 (200)
T PRK00277         98 GQAASMGAFLLAAGAKGKRFAL---------PNSRIMIHQPLGGFQGQATDIEIHAREILKLKKRLNEILAEHTGQPLEK  168 (200)
T ss_pred             eEeccHHHHHHhcCCCCCEEEc---------CCceEEeccCcccccCChhHHHHHHHHHHHHHHHHHHHHHHHHCcCHHH
Confidence            568889999988743  45555         44455554433221                      22333334  245


Q ss_pred             HHHHHhcCCCCCHHHHHHcCCcceecCC
Q psy9056          55 VLDMTLTGKTLKADKAKKMGIVDQLVEP   82 (359)
Q Consensus        55 a~~~~ltg~~~~a~eA~~~Glv~~~~~~   82 (359)
                      ..+++-.+..++|+||+++||+|+++.+
T Consensus       169 i~~~~~~~~~lsa~EA~e~GliD~Ii~~  196 (200)
T PRK00277        169 IEKDTDRDNFMSAEEAKEYGLIDEVLTK  196 (200)
T ss_pred             HHHHhhCCccccHHHHHHcCCccEEeec
Confidence            5566667778999999999999999976

>TIGR01035 hemA glutamyl-tRNA reductase

Probab=97.20  E-value=0.00074  Score=67.19  Aligned_cols=95  Identities=15%  Similarity=0.121  Sum_probs=60.6

Q ss_pred             cEEEEECCCcchHHHHHHHHHCC-CeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CCCC
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKG-YNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DPFK  298 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G-~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~l~  298 (359)
                      ++|+|||+|.||..++..+...| .+|++++++.++.+.....+..        ..            +.+ .+. +.+.
T Consensus       181 ~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~rs~~ra~~la~~~g~--------~~------------i~~-~~l~~~l~  239 (417)
T TIGR01035       181 KKALLIGAGEMGELVAKHLLRKGVGKILIANRTYERAEDLAKELGG--------EA------------VKF-EDLEEYLA  239 (417)
T ss_pred             CEEEEECChHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCC--------eE------------eeH-HHHHHHHh
Confidence            79999999999999999999999 6899999999876544322110        00            111 122 4567


Q ss_pred             CccEEEEcccCCHHH-HHHHHHHHHHhCCCCcEEEEcCC
Q psy9056         299 NADMVIEAVFEDINI-KHQVIKEIEAVVPPHCVVATNTS  336 (359)
Q Consensus       299 ~aD~Vi~avp~~~~~-k~~v~~~l~~~~~~~~ii~s~ts  336 (359)
                      ++|+||.|++....+ ..+.++.....-+...++++.+.
T Consensus       240 ~aDvVi~aT~s~~~ii~~e~l~~~~~~~~~~~~viDla~  278 (417)
T TIGR01035       240 EADIVISSTGAPHPIVSKEDVERALRERTRPLFIIDIAV  278 (417)
T ss_pred             hCCEEEECCCCCCceEcHHHHHHHHhcCCCCeEEEEeCC
Confidence            899999999755432 33444443221112346666543

This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.

>PRK08291 ectoine utilization protein EutC; Validated

Probab=97.20  E-value=0.001  Score=64.19  Aligned_cols=76  Identities=12%  Similarity=0.058  Sum_probs=55.3

Q ss_pred             ccEEEEECCCcchHHHHHHHHH-CC-CeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CC
Q psy9056         220 VKTVAVLGAGLMGAGIAHVTVD-KG-YNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DP  296 (359)
Q Consensus       220 ~~kI~IIG~G~mG~~iA~~l~~-~G-~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~  296 (359)
                      .++|+|||+|.+|...+..+.. .+ .+|.+|++++++.+...+.+++.+      +           -.+...++. +.
T Consensus       132 ~~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R~~~~a~~l~~~~~~~~------g-----------~~v~~~~d~~~a  194 (330)
T PRK08291        132 ASRAAVIGAGEQARLQLEALTLVRPIREVRVWARDAAKAEAYAADLRAEL------G-----------IPVTVARDVHEA  194 (330)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHhhcc------C-----------ceEEEeCCHHHH
Confidence            3689999999999998888875 44 589999999999887765443211      1           012334454 55


Q ss_pred             CCCccEEEEcccCCHH
Q psy9056         297 FKNADMVIEAVFEDIN  312 (359)
Q Consensus       297 l~~aD~Vi~avp~~~~  312 (359)
                      +.++|+|+.|+|....
T Consensus       195 l~~aDiVi~aT~s~~p  210 (330)
T PRK08291        195 VAGADIIVTTTPSEEP  210 (330)
T ss_pred             HccCCEEEEeeCCCCc
Confidence            7899999999987653

>TIGR00706 SppA_dom signal peptide peptidase SppA, 36K type

Probab=97.19  E-value=0.0011  Score=59.67  Aligned_cols=79  Identities=22%  Similarity=0.160  Sum_probs=51.6

Q ss_pred             CCCCchHHHHHHhcCEEEEecCCceEEeccccC------------CCCCCC------------c--chH----hHHh---
Q psy9056           1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVM------------LGLLPG------------A--GGT----QRLP---   47 (359)
Q Consensus         1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~------------~Gi~p~------------~--g~~----~~l~---   47 (359)
                      ++|.|+|+.|+++||.++|+++  +.|+...+.            +|+-+.            +  ..+    ..+.   
T Consensus        70 g~a~s~g~~la~aaD~i~a~p~--a~vg~iGv~~~~~~~~~~l~k~Gv~~~~~~~g~~K~~~~~~~~~s~~~~e~~~~~l  147 (207)
T TIGR00706        70 GVAASGGYYIAMAADEIVANPG--TITGSIGVILQGANVEKLYEKLGIEFEVIKSGEYKDIGSPTRELTPEERDILQNLV  147 (207)
T ss_pred             CccchHHHHHHhcCCEEEECCC--CeEEeeeEEEecCCHHHHHHhCCceEEEEEcCCCcCCCCCCCCCCHHHHHHHHHHH
Confidence            4688999999999999999987  877654333            333210            0  000    1111   


Q ss_pred             --------------hhcChHHHHHHHhcCCCCCHHHHHHcCCcceecCC
Q psy9056          48 --------------KLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEP   82 (359)
Q Consensus        48 --------------~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~~~   82 (359)
                                    |-+...... -+..++.+++++|++.||||++...
T Consensus       148 ~~~~~~f~~~va~~R~~~~~~~~-~~~~~~~~~~~~A~~~gLvD~i~~~  195 (207)
T TIGR00706       148 NESYEQFVQVVAKGRNLPVEDVK-KFADGRVFTGRQALKLRLVDKLGTE  195 (207)
T ss_pred             HHHHHHHHHHHHhcCCCCHHHHH-HHhcCCcccHHHHHHcCCCcccCCH
Confidence                          111222222 3467889999999999999999876

The member of this family from Bacillus subtilis was shown to have properties consistent with a role in degrading signal peptides after cleavage from precursor proteins, although it was not demonstrated conclusively.

>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase

Probab=97.19  E-value=0.00064  Score=60.22  Aligned_cols=74  Identities=20%  Similarity=0.255  Sum_probs=52.6

Q ss_pred             cEEEEECC-CcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhccccc--ccC----
Q psy9056         221 KTVAVLGA-GLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVG--TLS----  293 (359)
Q Consensus       221 ~kI~IIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~--~~~----  293 (359)
                      +++.|+|+ |.+|..++..+++.|++|++++|+.++++.....++...      +           ..+..  ..+    
T Consensus        29 ~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~~~~~~l~~~l~~~~------~-----------~~~~~~~~~~~~~~   91 (194)
T cd01078          29 KTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDLERAQKAADSLRARF------G-----------EGVGAVETSDDAAR   91 (194)
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhhc------C-----------CcEEEeeCCCHHHH
Confidence            68999996 999999999999999999999999888776554332110      0           00111  011    


Q ss_pred             cCCCCCccEEEEcccCCH
Q psy9056         294 YDPFKNADMVIEAVFEDI  311 (359)
Q Consensus       294 ~~~l~~aD~Vi~avp~~~  311 (359)
                      .+.+.++|+||-++|...
T Consensus        92 ~~~~~~~diVi~at~~g~  109 (194)
T cd01078          92 AAAIKGADVVFAAGAAGV  109 (194)
T ss_pred             HHHHhcCCEEEECCCCCc
Confidence            134688999999998665

Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo

>KOG3124|consensus

Probab=97.16  E-value=0.00089  Score=61.04  Aligned_cols=109  Identities=17%  Similarity=0.222  Sum_probs=77.9

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCC----eeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccc-cccCcC
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGY----NTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLV-GTLSYD  295 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~----~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~-~~~~~~  295 (359)
                      .+|++||+|+|..+++..+.+.|.    ++..+-.+.......          ...             ..+. +.++.+
T Consensus         1 ~~~gfigag~ma~ala~g~~~~Gi~~~~~i~~s~~~~~~~~~~----------~~~-------------~g~~~~~~n~~   57 (267)
T KOG3124|consen    1 MKVGFIGAGNMAQALASGFVASGIIEANRIWASVQTERSLGLM----------FEA-------------LGVKTVFTNLE   57 (267)
T ss_pred             CceeEechhhhHHHHHhcccccCCCchhheeeecCchhhhhhh----------hhc-------------CCceeeechHH
Confidence            379999999999999999999986    466665532221110          001             1122 233356


Q ss_pred             CCCCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCcHHHHHhhcCCCCcEE
Q psy9056         296 PFKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPITKIAAASKRPDKVR  354 (359)
Q Consensus       296 ~l~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~rvi  354 (359)
                      .++.+|++++++  ++.+...++.++......+.||+|...|.+++.+...++.+.|++
T Consensus        58 ~~~~s~v~~~sv--Kp~~i~~vls~~~~~~~~~~iivS~aaG~tl~~l~~~l~~~~rvi  114 (267)
T KOG3124|consen   58 VLQASDVVFLSV--KPQVIESVLSEIKPKVSKGKIIVSVAAGKTLSSLESKLSPPTRVI  114 (267)
T ss_pred             HHhhccceeEee--cchhHHHHhhcCccccccceEEEEEeecccHHHHHHhcCCCCceE
Confidence            788999999999  555577777777665666779999999999999999998666655

>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed

Probab=97.12  E-value=0.00089  Score=62.94  Aligned_cols=97  Identities=13%  Similarity=0.096  Sum_probs=63.0

Q ss_pred             cEEEEECCCcchHHHHHHHHHCC-CeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CCCC
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKG-YNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DPFK  298 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G-~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~l~  298 (359)
                      +++.|+|+|.+|.+++..+...| .+|++++|+.++.+...+.+...       .            .+.+..+. +.+.
T Consensus       124 k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~~~~a~~l~~~~~~~-------~------------~~~~~~~~~~~~~  184 (278)
T PRK00258        124 KRILILGAGGAARAVILPLLDLGVAEITIVNRTVERAEELAKLFGAL-------G------------KAELDLELQEELA  184 (278)
T ss_pred             CEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhc-------c------------ceeecccchhccc
Confidence            68999999999999999999999 69999999998877654433210       0            01111122 4578


Q ss_pred             CccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCC
Q psy9056         299 NADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTS  336 (359)
Q Consensus       299 ~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts  336 (359)
                      ++|+||.|+|....-......-..+.++++.++++...
T Consensus       185 ~~DivInaTp~g~~~~~~~~~~~~~~l~~~~~v~DivY  222 (278)
T PRK00258        185 DFDLIINATSAGMSGELPLPPLPLSLLRPGTIVYDMIY  222 (278)
T ss_pred             cCCEEEECCcCCCCCCCCCCCCCHHHcCCCCEEEEeec
Confidence            89999999986542100000001134567777776554

>PRK06046 alanine dehydrogenase; Validated

Probab=97.12  E-value=0.0012  Score=63.60  Aligned_cols=94  Identities=11%  Similarity=0.118  Sum_probs=63.8

Q ss_pred             ccEEEEECCCcchHHHHHHHHHC-CC-eeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcC-C
Q psy9056         220 VKTVAVLGAGLMGAGIAHVTVDK-GY-NTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYD-P  296 (359)
Q Consensus       220 ~~kI~IIG~G~mG~~iA~~l~~~-G~-~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~  296 (359)
                      .++|+|||+|.+|...+..+... +. .|.+||+++++.+...+.++..+      +           -.+...++.+ .
T Consensus       129 ~~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~------~-----------~~v~~~~~~~~~  191 (326)
T PRK06046        129 SKVVGIIGAGNQARTQLLALSEVFDLEEVRVYDRTKSSAEKFVERMSSVV------G-----------CDVTVAEDIEEA  191 (326)
T ss_pred             CCEEEEECCcHHHHHHHHHHHhhCCceEEEEECCCHHHHHHHHHHHHhhc------C-----------ceEEEeCCHHHH
Confidence            47999999999999999888754 33 79999999998887665443110      0           0123344553 4


Q ss_pred             CCCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCC
Q psy9056         297 FKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSA  337 (359)
Q Consensus       297 l~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~  337 (359)
                      ++ +|+|+.|+|...    .+|.  .+.+++++.|.+..+.
T Consensus       192 l~-aDiVv~aTps~~----P~~~--~~~l~~g~hV~~iGs~  225 (326)
T PRK06046        192 CD-CDILVTTTPSRK----PVVK--AEWIKEGTHINAIGAD  225 (326)
T ss_pred             hh-CCEEEEecCCCC----cEec--HHHcCCCCEEEecCCC
Confidence            55 999999999765    3332  2345788887666554

>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate

Probab=97.10  E-value=0.00082  Score=54.96  Aligned_cols=98  Identities=11%  Similarity=0.138  Sum_probs=59.3

Q ss_pred             EEEEEC-CCcchHHHHHHHHHCCC-e-eEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhccccccc-CcCCC
Q psy9056         222 TVAVLG-AGLMGAGIAHVTVDKGY-N-TIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTL-SYDPF  297 (359)
Q Consensus       222 kI~IIG-~G~mG~~iA~~l~~~G~-~-V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~l  297 (359)
                      ||+||| .|++|..+...|.++-. + +.++.++.+.-+..        ......        ......+.+.+ +.+.+
T Consensus         1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~--------~~~~~~--------~~~~~~~~~~~~~~~~~   64 (121)
T PF01118_consen    1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPL--------SEVFPH--------PKGFEDLSVEDADPEEL   64 (121)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBH--------HHTTGG--------GTTTEEEBEEETSGHHH
T ss_pred             CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCee--------ehhccc--------cccccceeEeecchhHh
Confidence            799999 79999999999999532 4 55566655221111        110000        00112233333 33557


Q ss_pred             CCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCcH
Q psy9056         298 KNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPI  340 (359)
Q Consensus       298 ~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~  340 (359)
                      .++|+||.|+|...  ..++...+   +..++.|+++++.+..
T Consensus        65 ~~~Dvvf~a~~~~~--~~~~~~~~---~~~g~~ViD~s~~~R~  102 (121)
T PF01118_consen   65 SDVDVVFLALPHGA--SKELAPKL---LKAGIKVIDLSGDFRL  102 (121)
T ss_dssp             TTESEEEE-SCHHH--HHHHHHHH---HHTTSEEEESSSTTTT
T ss_pred             hcCCEEEecCchhH--HHHHHHHH---hhCCcEEEeCCHHHhC
Confidence            99999999998555  44555555   3467888899887643

This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....

>cd07015 Clp_protease_NfeD Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease

Probab=97.10  E-value=0.0016  Score=56.69  Aligned_cols=79  Identities=16%  Similarity=0.218  Sum_probs=58.0

Q ss_pred             CCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCC----c---c-hHh------HHhhhcC--hHHHHHHHhcCCCC
Q psy9056           2 FAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPG----A---G-GTQ------RLPKLTA--LPNVLDMTLTGKTL   65 (359)
Q Consensus         2 ~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~----~---g-~~~------~l~~~~g--~~~a~~~~ltg~~~   65 (359)
                      .|..+|.-++++||.++|.++  ++++...+-.|..+.    .   - .+.      -+.+.-|  ...+..++-....+
T Consensus        71 ~AaSag~~I~~a~~~i~m~p~--s~iG~~~pi~~~g~~~~~~~~~~ki~~~~~~~~r~~A~~~Gr~~~~a~~~v~~~~~l  148 (172)
T cd07015          71 SAASAGTYIALGSHLIAMAPG--TSIGACRPILGYSQNGSIIEAPPKITNYFIAYIKSLAQESGRNATIAEEFITKDLSL  148 (172)
T ss_pred             eehhHHHHHHHhcCceEECCC--CEEEEccccccCCCCCccccchHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHhhcCc
Confidence            577899999999999999988  999988875443220    0   0 011      1222333  35667777788889


Q ss_pred             CHHHHHHcCCcceecCC
Q psy9056          66 KADKAKKMGIVDQLVEP   82 (359)
Q Consensus        66 ~a~eA~~~Glv~~~~~~   82 (359)
                      +++||+++|++|.++++
T Consensus       149 ta~EA~~~G~iD~ia~~  165 (172)
T cd07015         149 TPEEALKYGVIEVVARD  165 (172)
T ss_pred             CHHHHHHcCCceeeeCC
Confidence            99999999999999987

Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially cle

>PRK13940 glutamyl-tRNA reductase; Provisional

Probab=97.09  E-value=0.0046  Score=61.37  Aligned_cols=73  Identities=18%  Similarity=0.134  Sum_probs=53.2

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCC-eeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CCCC
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGY-NTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DPFK  298 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~-~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~l~  298 (359)
                      ++|.|||+|-||..++..+...|. +|++++|+.++.+.....++.        +.            ....+++ +.+.
T Consensus       182 kkvlviGaG~~a~~va~~L~~~g~~~I~V~nRt~~ra~~La~~~~~--------~~------------~~~~~~l~~~l~  241 (414)
T PRK13940        182 KNVLIIGAGQTGELLFRHVTALAPKQIMLANRTIEKAQKITSAFRN--------AS------------AHYLSELPQLIK  241 (414)
T ss_pred             CEEEEEcCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHhcC--------Ce------------EecHHHHHHHhc
Confidence            689999999999999999999996 799999999876665432210        00            0011222 4578


Q ss_pred             CccEEEEcccCCHHH
Q psy9056         299 NADMVIEAVFEDINI  313 (359)
Q Consensus       299 ~aD~Vi~avp~~~~~  313 (359)
                      ++|+||.|++.+.-+
T Consensus       242 ~aDiVI~aT~a~~~v  256 (414)
T PRK13940        242 KADIIIAAVNVLEYI  256 (414)
T ss_pred             cCCEEEECcCCCCee
Confidence            899999999765543

>COG1486 CelF Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases [Carbohydrate transport and metabolism]

Probab=97.09  E-value=0.0038  Score=61.64  Aligned_cols=124  Identities=15%  Similarity=0.111  Sum_probs=76.2

Q ss_pred             CccEEEEECCCcchHHHHH-HHHHC-----CCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhccccccc
Q psy9056         219 PVKTVAVLGAGLMGAGIAH-VTVDK-----GYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTL  292 (359)
Q Consensus       219 ~~~kI~IIG~G~mG~~iA~-~l~~~-----G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~  292 (359)
                      +..||+|||+|+.+.+--. .+...     +.++.++|.++++++....-    .++.++....+        -++..++
T Consensus         2 ~~~KI~iIGgGSt~tp~~v~g~l~~~e~l~~~el~L~Did~~r~~~i~~~----~~~~v~~~g~~--------~kv~~tt   69 (442)
T COG1486           2 KKFKIVIIGGGSTYTPKLLLGDLARTEELPVRELALYDIDEERLKIIAIL----AKKLVEEAGAP--------VKVEATT   69 (442)
T ss_pred             CcceEEEECCCccccHHHHHHHHhcCccCCcceEEEEeCCHHHHHHHHHH----HHHHHHhhCCC--------eEEEEec
Confidence            3468999999999877543 33332     45899999999998743322    22333322111        2466778


Q ss_pred             Cc-CCCCCccEEEEccc--------------C--------------------CHHHHHHHHHHHHHhCCCCcEEEEcCCC
Q psy9056         293 SY-DPFKNADMVIEAVF--------------E--------------------DINIKHQVIKEIEAVVPPHCVVATNTSA  337 (359)
Q Consensus       293 ~~-~~l~~aD~Vi~avp--------------~--------------------~~~~k~~v~~~l~~~~~~~~ii~s~ts~  337 (359)
                      |. ++++++|+|+.++-              .                    +..+.-++.+.+.+++ |++-++.-|+.
T Consensus        70 d~~eAl~gAdfVi~~~rvG~l~~r~~De~IplkyG~~gqET~G~GGi~~glRtIpvildi~~~m~~~~-P~Aw~lNytNP  148 (442)
T COG1486          70 DRREALEGADFVITQIRVGGLEAREKDERIPLKHGLYGQETNGPGGIFYGLRTIPVILDIAKDMEKVC-PNAWMLNYTNP  148 (442)
T ss_pred             CHHHHhcCCCEEEEEEeeCCcccchhhhccchhhCccccccccccHHHhhcccchHHHHHHHHHHHhC-CCceEEeccCh
Confidence            87 78999999996541              0                    1124446778889988 67766655554


Q ss_pred             Cc--HHHHHhhcCCCCcEEee
Q psy9056         338 IP--ITKIAAASKRPDKVRNM  356 (359)
Q Consensus       338 ~~--~~~l~~~~~~~~rvig~  356 (359)
                      ..  .+.+.+..+ .-++||+
T Consensus       149 ~~~vTeAv~r~~~-~~K~VGl  168 (442)
T COG1486         149 AAIVTEAVRRLYP-KIKIVGL  168 (442)
T ss_pred             HHHHHHHHHHhCC-CCcEEee
Confidence            32  333434343 3478774

>PRK06407 ornithine cyclodeaminase; Provisional

Probab=97.08  E-value=0.0017  Score=61.79  Aligned_cols=94  Identities=10%  Similarity=0.058  Sum_probs=65.5

Q ss_pred             ccEEEEECCCcchHHHHHHHHHC-C-CeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CC
Q psy9056         220 VKTVAVLGAGLMGAGIAHVTVDK-G-YNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DP  296 (359)
Q Consensus       220 ~~kI~IIG~G~mG~~iA~~l~~~-G-~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~  296 (359)
                      -++++|||+|..|...+..+..- . -+|.+|++++++.+...+.+++.+      +           -.+...++. ++
T Consensus       117 a~~l~iiGaG~QA~~~~~a~~~v~~i~~v~v~~r~~~~a~~f~~~~~~~~------~-----------~~v~~~~~~~ea  179 (301)
T PRK06407        117 VENFTIIGSGFQAETQLEGMASVYNPKRIRVYSRNFDHARAFAERFSKEF------G-----------VDIRPVDNAEAA  179 (301)
T ss_pred             CcEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHHhc------C-----------CcEEEeCCHHHH
Confidence            47999999999999988877764 2 279999999999887765544211      1           023444555 66


Q ss_pred             CCCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCC
Q psy9056         297 FKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTS  336 (359)
Q Consensus       297 l~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts  336 (359)
                      +.+||+|+-|++...    .++.  .+.+++++.|....+
T Consensus       180 v~~aDIV~taT~s~~----P~~~--~~~l~pg~hV~aiGs  213 (301)
T PRK06407        180 LRDADTITSITNSDT----PIFN--RKYLGDEYHVNLAGS  213 (301)
T ss_pred             HhcCCEEEEecCCCC----cEec--HHHcCCCceEEecCC
Confidence            899999999998765    3332  234567776655544

>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]

Probab=97.05  E-value=0.0022  Score=61.48  Aligned_cols=97  Identities=13%  Similarity=0.070  Sum_probs=69.2

Q ss_pred             CccEEEEECCCcchHHHHHHHHHC--CCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-C
Q psy9056         219 PVKTVAVLGAGLMGAGIAHVTVDK--GYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-D  295 (359)
Q Consensus       219 ~~~kI~IIG~G~mG~~iA~~l~~~--G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~  295 (359)
                      +.+.++|||+|.++......+..-  .-+|.+|+++++..++....+.+..                 ...+...++. +
T Consensus       129 da~~laiIGaG~qA~~ql~a~~~v~~~~~I~i~~r~~~~~e~~a~~l~~~~-----------------~~~v~a~~s~~~  191 (330)
T COG2423         129 DASTLAIIGAGAQARTQLEALKAVRDIREIRVYSRDPEAAEAFAARLRKRG-----------------GEAVGAADSAEE  191 (330)
T ss_pred             CCcEEEEECCcHHHHHHHHHHHhhCCccEEEEEcCCHHHHHHHHHHHHhhc-----------------CccceeccCHHH
Confidence            568999999999999988877654  3489999999999888765443211                 0123445555 6


Q ss_pred             CCCCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCC
Q psy9056         296 PFKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAI  338 (359)
Q Consensus       296 ~l~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~  338 (359)
                      ++++||+|+-|+|.+..+    ++  .+++++++.|....+..
T Consensus       192 av~~aDiIvt~T~s~~Pi----l~--~~~l~~G~hI~aiGad~  228 (330)
T COG2423         192 AVEGADIVVTATPSTEPV----LK--AEWLKPGTHINAIGADA  228 (330)
T ss_pred             HhhcCCEEEEecCCCCCe----ec--HhhcCCCcEEEecCCCC
Confidence            789999999999987733    32  34567888887666543

>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed

Probab=97.05  E-value=0.0015  Score=66.04  Aligned_cols=72  Identities=17%  Similarity=0.194  Sum_probs=53.0

Q ss_pred             ccEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcCCCCC
Q psy9056         220 VKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPFKN  299 (359)
Q Consensus       220 ~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~  299 (359)
                      -+++.|+|+|.+|.+++..+.+.|++|+++++++++.+.....+..        .             .....+...+.+
T Consensus       332 ~k~vlIiGaGgiG~aia~~L~~~G~~V~i~~R~~~~~~~la~~~~~--------~-------------~~~~~~~~~l~~  390 (477)
T PRK09310        332 NQHVAIVGAGGAAKAIATTLARAGAELLIFNRTKAHAEALASRCQG--------K-------------AFPLESLPELHR  390 (477)
T ss_pred             CCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcc--------c-------------eechhHhcccCC
Confidence            3689999999999999999999999999999998876654332110        0             000112233678


Q ss_pred             ccEEEEcccCCHH
Q psy9056         300 ADMVIEAVFEDIN  312 (359)
Q Consensus       300 aD~Vi~avp~~~~  312 (359)
                      +|+||.|+|....
T Consensus       391 ~DiVInatP~g~~  403 (477)
T PRK09310        391 IDIIINCLPPSVT  403 (477)
T ss_pred             CCEEEEcCCCCCc
Confidence            9999999998764

>PLN00203 glutamyl-tRNA reductase

Probab=97.01  E-value=0.0045  Score=63.11  Aligned_cols=99  Identities=16%  Similarity=0.135  Sum_probs=63.7

Q ss_pred             ccEEEEECCCcchHHHHHHHHHCCC-eeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CCC
Q psy9056         220 VKTVAVLGAGLMGAGIAHVTVDKGY-NTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DPF  297 (359)
Q Consensus       220 ~~kI~IIG~G~mG~~iA~~l~~~G~-~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~l  297 (359)
                      -++|+|||+|.||..++..+...|. +|++++++.++.+.....+.         +. .        -.....++. +.+
T Consensus       266 ~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs~era~~La~~~~---------g~-~--------i~~~~~~dl~~al  327 (519)
T PLN00203        266 SARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRSEERVAALREEFP---------DV-E--------IIYKPLDEMLACA  327 (519)
T ss_pred             CCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhC---------CC-c--------eEeecHhhHHHHH
Confidence            4789999999999999999999997 79999999988766543221         00 0        001111222 457


Q ss_pred             CCccEEEEcccCCH-HHHHHHHHHHHHhC---CCCcEEEEcCC
Q psy9056         298 KNADMVIEAVFEDI-NIKHQVIKEIEAVV---PPHCVVATNTS  336 (359)
Q Consensus       298 ~~aD~Vi~avp~~~-~~k~~v~~~l~~~~---~~~~ii~s~ts  336 (359)
                      .++|+||.|++... -+.++.++.+.+.-   ....++++.+-
T Consensus       328 ~~aDVVIsAT~s~~pvI~~e~l~~~~~~~~~~~~~~~~IDLAv  370 (519)
T PLN00203        328 AEADVVFTSTSSETPLFLKEHVEALPPASDTVGGKRLFVDISV  370 (519)
T ss_pred             hcCCEEEEccCCCCCeeCHHHHHHhhhcccccCCCeEEEEeCC
Confidence            89999999986533 34455666554321   11246666543

>PRK00045 hemA glutamyl-tRNA reductase; Reviewed

Probab=97.00  E-value=0.001  Score=66.37  Aligned_cols=95  Identities=18%  Similarity=0.161  Sum_probs=61.7

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCC-eeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CCCC
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGY-NTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DPFK  298 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~-~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~l~  298 (359)
                      ++|+|||+|.||..++..+...|. +|+++++++++.+.....+..        ..            +.. .+. +.+.
T Consensus       183 ~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~~~ra~~la~~~g~--------~~------------~~~-~~~~~~l~  241 (423)
T PRK00045        183 KKVLVIGAGEMGELVAKHLAEKGVRKITVANRTLERAEELAEEFGG--------EA------------IPL-DELPEALA  241 (423)
T ss_pred             CEEEEECchHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcCC--------cE------------eeH-HHHHHHhc
Confidence            789999999999999999999997 899999999876654332110        00            001 112 4567


Q ss_pred             CccEEEEcccCCHH-HHHHHHHHHHHhC-CCCcEEEEcCC
Q psy9056         299 NADMVIEAVFEDIN-IKHQVIKEIEAVV-PPHCVVATNTS  336 (359)
Q Consensus       299 ~aD~Vi~avp~~~~-~k~~v~~~l~~~~-~~~~ii~s~ts  336 (359)
                      ++|+||.|++.+.. +..+.++.....- ..+.++++.+.
T Consensus       242 ~aDvVI~aT~s~~~~i~~~~l~~~~~~~~~~~~vviDla~  281 (423)
T PRK00045        242 EADIVISSTGAPHPIIGKGMVERALKARRHRPLLLVDLAV  281 (423)
T ss_pred             cCCEEEECCCCCCcEEcHHHHHHHHhhccCCCeEEEEeCC
Confidence            89999999976543 2334444432211 23456666543

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=96.97  E-value=0.0027  Score=55.10  Aligned_cols=74  Identities=30%  Similarity=0.296  Sum_probs=54.6

Q ss_pred             ccEEEEECCCcc-hHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcCCCC
Q psy9056         220 VKTVAVLGAGLM-GAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPFK  298 (359)
Q Consensus       220 ~~kI~IIG~G~m-G~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~  298 (359)
                      -++|.|||+|.| |..++..|.+.|.+|++.+++.+.+.                                     +.+.
T Consensus        44 gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~~~l~-------------------------------------~~l~   86 (168)
T cd01080          44 GKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKTKNLK-------------------------------------EHTK   86 (168)
T ss_pred             CCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCchhHH-------------------------------------HHHh
Confidence            389999999986 88899999999999999998753211                                     2478


Q ss_pred             CccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCC
Q psy9056         299 NADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSA  337 (359)
Q Consensus       299 ~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~  337 (359)
                      ++|+||-|++...-+..+       .+.++.+|++.+..
T Consensus        87 ~aDiVIsat~~~~ii~~~-------~~~~~~viIDla~p  118 (168)
T cd01080          87 QADIVIVAVGKPGLVKGD-------MVKPGAVVIDVGIN  118 (168)
T ss_pred             hCCEEEEcCCCCceecHH-------HccCCeEEEEccCC
Confidence            899999999764322222       24556777766554

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>TIGR00518 alaDH alanine dehydrogenase

Probab=96.96  E-value=0.0028  Score=62.04  Aligned_cols=99  Identities=19%  Similarity=0.246  Sum_probs=61.2

Q ss_pred             CccEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CCC
Q psy9056         219 PVKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DPF  297 (359)
Q Consensus       219 ~~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~l  297 (359)
                      .-.+|.|||+|.+|...+..+...|.+|+++|+++++++.+...+....    ...             ..-..++ +.+
T Consensus       166 ~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~~~g~~v----~~~-------------~~~~~~l~~~l  228 (370)
T TIGR00518       166 EPGDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQLDAEFGGRI----HTR-------------YSNAYEIEDAV  228 (370)
T ss_pred             CCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHhcCcee----Eec-------------cCCHHHHHHHH
Confidence            3477999999999999999999999999999999987665432211000    000             0000111 346


Q ss_pred             CCccEEEEcccCCHH-HHHHHHHHHHHhCCCCcEEEEc
Q psy9056         298 KNADMVIEAVFEDIN-IKHQVIKEIEAVVPPHCVVATN  334 (359)
Q Consensus       298 ~~aD~Vi~avp~~~~-~k~~v~~~l~~~~~~~~ii~s~  334 (359)
                      .++|+||.+++.... ...-+-++..+.++++.+|++.
T Consensus       229 ~~aDvVI~a~~~~g~~~p~lit~~~l~~mk~g~vIvDv  266 (370)
T TIGR00518       229 KRADLLIGAVLIPGAKAPKLVSNSLVAQMKPGAVIVDV  266 (370)
T ss_pred             ccCCEEEEccccCCCCCCcCcCHHHHhcCCCCCEEEEE
Confidence            789999999842110 0001223444456788877653

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>PRK06823 ornithine cyclodeaminase; Validated

Probab=96.95  E-value=0.0032  Score=60.31  Aligned_cols=95  Identities=11%  Similarity=0.086  Sum_probs=66.5

Q ss_pred             CccEEEEECCCcchHHHHHHHHHC--CCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-C
Q psy9056         219 PVKTVAVLGAGLMGAGIAHVTVDK--GYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-D  295 (359)
Q Consensus       219 ~~~kI~IIG~G~mG~~iA~~l~~~--G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~  295 (359)
                      ..++++|||+|.++...+..+...  --+|++|++++++.+...+.+++       .+           -.+...++. +
T Consensus       127 d~~~l~iiG~G~qA~~~~~a~~~v~~i~~v~v~~r~~~~a~~~~~~~~~-------~~-----------~~v~~~~~~~~  188 (315)
T PRK06823        127 HVSAIGIVGTGIQARMQLMYLKNVTDCRQLWVWGRSETALEEYRQYAQA-------LG-----------FAVNTTLDAAE  188 (315)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHh-------cC-----------CcEEEECCHHH
Confidence            347999999999999998877654  23899999999998876543321       01           023334555 6


Q ss_pred             CCCCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCC
Q psy9056         296 PFKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSA  337 (359)
Q Consensus       296 ~l~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~  337 (359)
                      ++++||+|+-|++...    .+|+  .+.+++++.|....+.
T Consensus       189 av~~ADIV~taT~s~~----P~~~--~~~l~~G~hi~~iGs~  224 (315)
T PRK06823        189 VAHAANLIVTTTPSRE----PLLQ--AEDIQPGTHITAVGAD  224 (315)
T ss_pred             HhcCCCEEEEecCCCC----ceeC--HHHcCCCcEEEecCCC
Confidence            6899999999998665    3342  2356788877666553

>PRK00048 dihydrodipicolinate reductase; Provisional

Probab=96.89  E-value=0.0028  Score=58.90  Aligned_cols=94  Identities=16%  Similarity=0.132  Sum_probs=57.6

Q ss_pred             cEEEEECC-CcchHHHHHHHHHC-CCeeE-EecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CC
Q psy9056         221 KTVAVLGA-GLMGAGIAHVTVDK-GYNTI-VKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DP  296 (359)
Q Consensus       221 ~kI~IIG~-G~mG~~iA~~l~~~-G~~V~-l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~  296 (359)
                      .||+|+|+ |.||..++..+.+. +++|+ ++|++++.....            ..            ..+...+++ +.
T Consensus         2 mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~~~~------------~~------------~~i~~~~dl~~l   57 (257)
T PRK00048          2 IKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPLVGQ------------GA------------LGVAITDDLEAV   57 (257)
T ss_pred             cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCcccccc------------CC------------CCccccCCHHHh
Confidence            58999998 99999999888764 67754 478887643221            00            012234455 33


Q ss_pred             CCCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCcHHHH
Q psy9056         297 FKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPITKI  343 (359)
Q Consensus       297 l~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~l  343 (359)
                      +.++|+||+++|.+..  .++.....+   .+.-++..+++...+++
T Consensus        58 l~~~DvVid~t~p~~~--~~~~~~al~---~G~~vvigttG~s~~~~   99 (257)
T PRK00048         58 LADADVLIDFTTPEAT--LENLEFALE---HGKPLVIGTTGFTEEQL   99 (257)
T ss_pred             ccCCCEEEECCCHHHH--HHHHHHHHH---cCCCEEEECCCCCHHHH
Confidence            5689999999965542  344443333   34433344667666544

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=96.83  E-value=0.019  Score=57.54  Aligned_cols=98  Identities=17%  Similarity=0.192  Sum_probs=61.7

Q ss_pred             CccEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc--CC
Q psy9056         219 PVKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY--DP  296 (359)
Q Consensus       219 ~~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~  296 (359)
                      ..++|.|+|+|.+|..++..|.+.|++|+++|.+++..+.......+.   ..-.|.            ..-...+  ..
T Consensus       230 ~~~~iiIiG~G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~~~~---~~i~gd------------~~~~~~L~~~~  294 (453)
T PRK09496        230 PVKRVMIVGGGNIGYYLAKLLEKEGYSVKLIERDPERAEELAEELPNT---LVLHGD------------GTDQELLEEEG  294 (453)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHCCCC---eEEECC------------CCCHHHHHhcC
Confidence            458999999999999999999999999999999999876644321000   000000            0000111  24


Q ss_pred             CCCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEE
Q psy9056         297 FKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVAT  333 (359)
Q Consensus       297 l~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s  333 (359)
                      +.++|.||.+++++.  .......+.+.++...+|+-
T Consensus       295 ~~~a~~vi~~~~~~~--~n~~~~~~~~~~~~~~ii~~  329 (453)
T PRK09496        295 IDEADAFIALTNDDE--ANILSSLLAKRLGAKKVIAL  329 (453)
T ss_pred             CccCCEEEECCCCcH--HHHHHHHHHHHhCCCeEEEE
Confidence            689999999888764  22333333344455555543

>PRK13303 L-aspartate dehydrogenase; Provisional

Probab=96.78  E-value=0.0035  Score=58.50  Aligned_cols=79  Identities=15%  Similarity=0.146  Sum_probs=46.4

Q ss_pred             ccEEEEECCCcchHHHHHHHHHC-CCeeEE-ecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcCCC
Q psy9056         220 VKTVAVLGAGLMGAGIAHVTVDK-GYNTIV-KDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPF  297 (359)
Q Consensus       220 ~~kI~IIG~G~mG~~iA~~l~~~-G~~V~l-~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l  297 (359)
                      |.||+|||+|.||..++..+.+. +.++.. ++++.. .+.....        ..             ..+...+|++.+
T Consensus         1 m~rVgIiG~G~iG~~~~~~l~~~~~~~l~~v~~~~~~-~~~~~~~--------~~-------------~~~~~~~d~~~l   58 (265)
T PRK13303          1 MMKVAMIGFGAIGAAVLELLEHDPDLRVDWVIVPEHS-IDAVRRA--------LG-------------EAVRVVSSVDAL   58 (265)
T ss_pred             CcEEEEECCCHHHHHHHHHHhhCCCceEEEEEEcCCC-HHHHhhh--------hc-------------cCCeeeCCHHHh
Confidence            35999999999999999998876 455433 333221 1111100        00             013345555444


Q ss_pred             -CCccEEEEcccCCHHHHHHHHHHHH
Q psy9056         298 -KNADMVIEAVFEDINIKHQVIKEIE  322 (359)
Q Consensus       298 -~~aD~Vi~avp~~~~~k~~v~~~l~  322 (359)
                       .+.|+|++|+|...  ..++.....
T Consensus        59 ~~~~DvVve~t~~~~--~~e~~~~aL   82 (265)
T PRK13303         59 PQRPDLVVECAGHAA--LKEHVVPIL   82 (265)
T ss_pred             ccCCCEEEECCCHHH--HHHHHHHHH
Confidence             56899999998654  234444443

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=96.78  E-value=0.008  Score=60.18  Aligned_cols=94  Identities=18%  Similarity=0.206  Sum_probs=59.2

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-C-CCC
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-D-PFK  298 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~-~l~  298 (359)
                      ++|.|+|+|.+|..++..|.+.|++|+++|+++++++.+.....  ..  .-.|.            ..-...+ + .+.
T Consensus         1 m~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~~~--~~--~~~gd------------~~~~~~l~~~~~~   64 (453)
T PRK09496          1 MKIIIVGAGQVGYTLAENLSGENNDVTVIDTDEERLRRLQDRLD--VR--TVVGN------------GSSPDVLREAGAE   64 (453)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhcC--EE--EEEeC------------CCCHHHHHHcCCC
Confidence            37999999999999999999999999999999998765432110  00  00010            0000111 2 378


Q ss_pred             CccEEEEcccCCHHHHHHHHHHH-HHhCCCCcEEE
Q psy9056         299 NADMVIEAVFEDINIKHQVIKEI-EAVVPPHCVVA  332 (359)
Q Consensus       299 ~aD~Vi~avp~~~~~k~~v~~~l-~~~~~~~~ii~  332 (359)
                      ++|.||.+++++.  ....+... ....+...+|+
T Consensus        65 ~a~~vi~~~~~~~--~n~~~~~~~r~~~~~~~ii~   97 (453)
T PRK09496         65 DADLLIAVTDSDE--TNMVACQIAKSLFGAPTTIA   97 (453)
T ss_pred             cCCEEEEecCChH--HHHHHHHHHHHhcCCCeEEE
Confidence            8999999998754  23333333 33335555555

>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B

Probab=96.74  E-value=0.0032  Score=54.64  Aligned_cols=90  Identities=22%  Similarity=0.244  Sum_probs=56.5

Q ss_pred             EEEECC-CcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CCCCCc
Q psy9056         223 VAVLGA-GLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DPFKNA  300 (359)
Q Consensus       223 I~IIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~l~~a  300 (359)
                      |.|+|+ |.+|..++..|.+.|++|+++-|++++++. ..        .++.-..          .+.-.+++ +++.++
T Consensus         1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~-~~--------~~~~~~~----------d~~d~~~~~~al~~~   61 (183)
T PF13460_consen    1 ILVFGATGFVGRALAKQLLRRGHEVTALVRSPSKAED-SP--------GVEIIQG----------DLFDPDSVKAALKGA   61 (183)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHH-CT--------TEEEEES----------CTTCHHHHHHHHTTS
T ss_pred             eEEECCCChHHHHHHHHHHHCCCEEEEEecCchhccc-cc--------cccccee----------eehhhhhhhhhhhhc
Confidence            689997 999999999999999999999999987554 00        0000000          00000111 346799


Q ss_pred             cEEEEcccC---CHHHHHHHHHHHHHhCCCCcEEE
Q psy9056         301 DMVIEAVFE---DINIKHQVIKEIEAVVPPHCVVA  332 (359)
Q Consensus       301 D~Vi~avp~---~~~~k~~v~~~l~~~~~~~~ii~  332 (359)
                      |.||.+++.   +....+.+++.+.+. +...+|.
T Consensus        62 d~vi~~~~~~~~~~~~~~~~~~a~~~~-~~~~~v~   95 (183)
T PF13460_consen   62 DAVIHAAGPPPKDVDAAKNIIEAAKKA-GVKRVVY   95 (183)
T ss_dssp             SEEEECCHSTTTHHHHHHHHHHHHHHT-TSSEEEE
T ss_pred             chhhhhhhhhccccccccccccccccc-cccccee
Confidence            999999973   333444555555554 3334443

...

>PRK07589 ornithine cyclodeaminase; Validated

Probab=96.73  E-value=0.0054  Score=59.42  Aligned_cols=96  Identities=15%  Similarity=0.129  Sum_probs=63.0

Q ss_pred             CccEEEEECCCcchHHHHHHHHHC--CCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-C
Q psy9056         219 PVKTVAVLGAGLMGAGIAHVTVDK--GYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-D  295 (359)
Q Consensus       219 ~~~kI~IIG~G~mG~~iA~~l~~~--G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~  295 (359)
                      .-++++|||+|..+...+..+..-  -.+|++|++++++.+...+.++.       .+           -.+...++. +
T Consensus       128 da~~l~iiGaG~QA~~~l~a~~~vr~i~~V~v~~r~~~~a~~~~~~~~~-------~~-----------~~v~~~~~~~~  189 (346)
T PRK07589        128 DSRTMALIGNGAQSEFQALAFKALLGIEEIRLYDIDPAATAKLARNLAG-------PG-----------LRIVACRSVAE  189 (346)
T ss_pred             CCcEEEEECCcHHHHHHHHHHHHhCCceEEEEEeCCHHHHHHHHHHHHh-------cC-----------CcEEEeCCHHH
Confidence            347899999999998887655543  24899999999998877655432       01           023344555 5


Q ss_pred             CCCCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCC
Q psy9056         296 PFKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTS  336 (359)
Q Consensus       296 ~l~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts  336 (359)
                      ++++||+|+-|++....  ..+|+  .+.+++++.|....+
T Consensus       190 av~~ADIIvtaT~S~~~--~Pvl~--~~~lkpG~hV~aIGs  226 (346)
T PRK07589        190 AVEGADIITTVTADKTN--ATILT--DDMVEPGMHINAVGG  226 (346)
T ss_pred             HHhcCCEEEEecCCCCC--Cceec--HHHcCCCcEEEecCC
Confidence            68999999999975430  01222  134567776655444

>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.66  E-value=0.0051  Score=57.84  Aligned_cols=93  Identities=18%  Similarity=0.207  Sum_probs=65.4

Q ss_pred             hhhHHHHHhHhhhhhhhhcCCCCCCCCccEEEEECCCc-chHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHH
Q psy9056         193 PQSKGLMGLFRAQTECKKNRLGKPQTPVKTVAVLGAGL-MGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAV  271 (359)
Q Consensus       193 ~~~~~~~~af~~k~~~~~~~~~~~~~~~~kI~IIG~G~-mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~  271 (359)
                      |-+-.++-.++++..-        .-.=++|.|||.|. +|.++|..|.+.|..|++++.....++              
T Consensus       139 PcTp~ai~~ll~~~~i--------~l~Gk~vvVIGrs~~VG~pla~lL~~~gatVtv~~s~t~~l~--------------  196 (286)
T PRK14175        139 PCTPLGIMEILKHADI--------DLEGKNAVVIGRSHIVGQPVSKLLLQKNASVTILHSRSKDMA--------------  196 (286)
T ss_pred             CCcHHHHHHHHHHcCC--------CCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCchhHH--------------
Confidence            4556666666665431        12237999999987 999999999999999999986532111              


Q ss_pred             hhccCChHHHHhhhcccccccCcCCCCCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCC
Q psy9056         272 KRKKMSALDRDRYLASLVGTLSYDPFKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSA  337 (359)
Q Consensus       272 ~~~~~~~~~~~~~~~~i~~~~~~~~l~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~  337 (359)
                                             +.+.+||+||.+++...-     +..  ++++++++|++....
T Consensus       197 -----------------------~~~~~ADIVIsAvg~p~~-----i~~--~~vk~gavVIDvGi~  232 (286)
T PRK14175        197 -----------------------SYLKDADVIVSAVGKPGL-----VTK--DVVKEGAVIIDVGNT  232 (286)
T ss_pred             -----------------------HHHhhCCEEEECCCCCcc-----cCH--HHcCCCcEEEEcCCC
Confidence                                   237899999999975432     221  246788988876653

>cd07023 S49_Sppa_N_C Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad

Probab=96.66  E-value=0.0036  Score=56.21  Aligned_cols=80  Identities=23%  Similarity=0.143  Sum_probs=51.3

Q ss_pred             CCCCchHHHHHHhcCEEEEecCCceEEecccc------------CCCCCCCcch------------------HhHHhhhc
Q psy9056           1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEV------------MLGLLPGAGG------------------TQRLPKLT   50 (359)
Q Consensus         1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~------------~~Gi~p~~g~------------------~~~l~~~~   50 (359)
                      |+|.|+|..|+++||++++++.  +.|+..-+            ++|+-+..-.                  ...+...+
T Consensus        75 g~~~s~g~~lA~aaD~i~a~~~--s~~g~iG~~~~~~~~~~~l~k~Gi~~~~~~~g~~K~~~~~~~~~s~~~~e~~~~~l  152 (208)
T cd07023          75 DVAASGGYYIAAAADKIVANPT--TITGSIGVIGQGPNLEELLDKLGIERDTIKSGPGKDKGSPDRPLTEEERAILQALV  152 (208)
T ss_pred             CcchhHHHHHHhhCCEEEECCC--CeEEeCcEEEecCCHHHHHHhcCCceEEEecCCCccCCCCCCCCCHHHHHHHHHHH
Confidence            5788999999999999999987  88764322            2343332211                  01111111


Q ss_pred             Ch----------------HHHHHHHhcCCCCCHHHHHHcCCcceecCC
Q psy9056          51 AL----------------PNVLDMTLTGKTLKADKAKKMGIVDQLVEP   82 (359)
Q Consensus        51 g~----------------~~a~~~~ltg~~~~a~eA~~~Glv~~~~~~   82 (359)
                      ..                ....+-+..|..+++++|++.||||++...
T Consensus       153 ~~~~~~f~~~Va~~R~~~~~~~~~~~~~~~~~a~~A~~~gLiD~i~~~  200 (208)
T cd07023         153 DDIYDQFVDVVAEGRGMSGERLDKLADGRVWTGRQALELGLVDELGGL  200 (208)
T ss_pred             HHHHHHHHHHHHhcCCCCHHHHHHhcCCcEEEHHHHHHcCCCcccCCH
Confidence            10                011233567888999999999999999865

Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. This subfamily contains members with either a single domain (sometimes referred to as 36K type), such as sohB peptidase, protein C and archaeal signal peptide peptidase, or an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad

>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type

Probab=96.66  E-value=0.0053  Score=57.85  Aligned_cols=75  Identities=19%  Similarity=0.114  Sum_probs=52.8

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCC-eeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CCCC
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGY-NTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DPFK  298 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~-~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~l~  298 (359)
                      +++.|||+|-+|.+++..++..|. +|++++|++++.+...+.+...       ..+.         .+....+. +.+.
T Consensus       126 k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt~~ka~~La~~~~~~-------~~~~---------~~~~~~~~~~~~~  189 (282)
T TIGR01809       126 FRGLVIGAGGTSRAAVYALASLGVTDITVINRNPDKLSRLVDLGVQV-------GVIT---------RLEGDSGGLAIEK  189 (282)
T ss_pred             ceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhhhc-------Ccce---------eccchhhhhhccc
Confidence            689999999999999999999997 7999999998877655433210       0000         01000122 3457


Q ss_pred             CccEEEEcccCCH
Q psy9056         299 NADMVIEAVFEDI  311 (359)
Q Consensus       299 ~aD~Vi~avp~~~  311 (359)
                      ++|+||-|+|...
T Consensus       190 ~~DiVInaTp~g~  202 (282)
T TIGR01809       190 AAEVLVSTVPADV  202 (282)
T ss_pred             CCCEEEECCCCCC
Confidence            8999999998754

This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.

>PRK12553 ATP-dependent Clp protease proteolytic subunit; Reviewed

Probab=96.66  E-value=0.0041  Score=55.85  Aligned_cols=79  Identities=24%  Similarity=0.210  Sum_probs=56.2

Q ss_pred             CCCCchHHHHHHhcC--EEEEecCCceEEeccccCCCCCCCcch------------------HhHHhhhcCh--HHHHHH
Q psy9056           1 MFAEPSLATVALACH--YRIVVKDKKTGLGLPEVMLGLLPGAGG------------------TQRLPKLTAL--PNVLDM   58 (359)
Q Consensus         1 ~~a~GgG~~lalacD--~ria~~~~~~~~~~pe~~~Gi~p~~g~------------------~~~l~~~~g~--~~a~~~   58 (359)
                      |.|.+.|..|+++||  .|++.++  ++|.+-....+- +..|-                  ...+....|.  ....++
T Consensus       102 G~aaSaa~lI~~ag~~~~R~~~p~--s~imiH~p~~~~-~~~G~a~d~~~~~~~l~~~~~~~~~~ya~~tg~~~e~i~~~  178 (207)
T PRK12553        102 GQAASAGAVLLAAGTPGKRFALPN--ARILIHQPSLGG-GIRGQASDLEIQAREILRMRERLERILAEHTGQSVEKIRKD  178 (207)
T ss_pred             eehhhHHHHHHHcCCcCcEEECCC--chhhhcCccccC-CCccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence            467889999999999  5999988  888887765320 11111                  1223333342  455566


Q ss_pred             HhcCCCCCHHHHHHcCCcceecCC
Q psy9056          59 TLTGKTLKADKAKKMGIVDQLVEP   82 (359)
Q Consensus        59 ~ltg~~~~a~eA~~~Glv~~~~~~   82 (359)
                      +-.+..++|+||+++||||+++++
T Consensus       179 ~~~~~~lta~EA~e~GliD~I~~~  202 (207)
T PRK12553        179 TDRDKWLTAEEAKDYGLVDQIITS  202 (207)
T ss_pred             HhcCccccHHHHHHcCCccEEcCc
Confidence            777889999999999999999987

>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]

Probab=96.58  E-value=0.018  Score=56.79  Aligned_cols=93  Identities=18%  Similarity=0.240  Sum_probs=61.6

Q ss_pred             cEEEEECCCcchHHHHHHHHHCC-CeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccC-cCCCC
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKG-YNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLS-YDPFK  298 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G-~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~l~  298 (359)
                      ++|.|||+|-||.-.|..|..+| .+|++.+|+.++.++....+.         +            ....-++ .+.+.
T Consensus       179 ~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT~erA~~La~~~~---------~------------~~~~l~el~~~l~  237 (414)
T COG0373         179 KKVLVIGAGEMGELVAKHLAEKGVKKITIANRTLERAEELAKKLG---------A------------EAVALEELLEALA  237 (414)
T ss_pred             CeEEEEcccHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHhC---------C------------eeecHHHHHHhhh
Confidence            68999999999999999999999 589999999999887655332         0            0111112 25689


Q ss_pred             CccEEEEcccCCHH-HHHHHHHHHHHhCCCCcEEEEcC
Q psy9056         299 NADMVIEAVFEDIN-IKHQVIKEIEAVVPPHCVVATNT  335 (359)
Q Consensus       299 ~aD~Vi~avp~~~~-~k~~v~~~l~~~~~~~~ii~s~t  335 (359)
                      ++|+||.|+..+.. +.+..+....+. +.+-++++..
T Consensus       238 ~~DvVissTsa~~~ii~~~~ve~a~~~-r~~~livDia  274 (414)
T COG0373         238 EADVVISSTSAPHPIITREMVERALKI-RKRLLIVDIA  274 (414)
T ss_pred             hCCEEEEecCCCccccCHHHHHHHHhc-ccCeEEEEec
Confidence            99999999754332 333444443322 2223555543

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=96.57  E-value=0.012  Score=60.77  Aligned_cols=96  Identities=8%  Similarity=0.079  Sum_probs=61.9

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc--CCCC
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY--DPFK  298 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~l~  298 (359)
                      ..|-|+|+|.+|..++..+.+.|++|+++|.|+++.+.+.+.-.     ..-.|..++            .+.+  ..++
T Consensus       418 ~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~~g~-----~~i~GD~~~------------~~~L~~a~i~  480 (558)
T PRK10669        418 NHALLVGYGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRERGI-----RAVLGNAAN------------EEIMQLAHLD  480 (558)
T ss_pred             CCEEEECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCC-----eEEEcCCCC------------HHHHHhcCcc
Confidence            67999999999999999999999999999999998776543100     000010000            0011  2468


Q ss_pred             CccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEc
Q psy9056         299 NADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATN  334 (359)
Q Consensus       299 ~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~  334 (359)
                      ++|.++.+++++.+.. .+...+....++-.|++-.
T Consensus       481 ~a~~viv~~~~~~~~~-~iv~~~~~~~~~~~iiar~  515 (558)
T PRK10669        481 CARWLLLTIPNGYEAG-EIVASAREKRPDIEIIARA  515 (558)
T ss_pred             ccCEEEEEcCChHHHH-HHHHHHHHHCCCCeEEEEE
Confidence            9999999998876532 2333344444433455433

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=96.57  E-value=0.025  Score=45.36  Aligned_cols=95  Identities=17%  Similarity=0.150  Sum_probs=58.8

Q ss_pred             EEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc--CCCCCc
Q psy9056         223 VAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY--DPFKNA  300 (359)
Q Consensus       223 I~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~l~~a  300 (359)
                      |.|+|.|.+|..++..|.+.+.+|+++|.+++..+.+....-.     .-.|..+.            ...+  ..++++
T Consensus         1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~~~~-----~i~gd~~~------------~~~l~~a~i~~a   63 (116)
T PF02254_consen    1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREEGVE-----VIYGDATD------------PEVLERAGIEKA   63 (116)
T ss_dssp             EEEES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTTSE-----EEES-TTS------------HHHHHHTTGGCE
T ss_pred             eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhcccc-----cccccchh------------hhHHhhcCcccc
Confidence            5799999999999999999777999999999987765432100     00010000            0001  247899


Q ss_pred             cEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcC
Q psy9056         301 DMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNT  335 (359)
Q Consensus       301 D~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~t  335 (359)
                      +.||.+++++.. -..+...+....+.-.+++-..
T Consensus        64 ~~vv~~~~~d~~-n~~~~~~~r~~~~~~~ii~~~~   97 (116)
T PF02254_consen   64 DAVVILTDDDEE-NLLIALLARELNPDIRIIARVN   97 (116)
T ss_dssp             SEEEEESSSHHH-HHHHHHHHHHHTTTSEEEEEES
T ss_pred             CEEEEccCCHHH-HHHHHHHHHHHCCCCeEEEEEC
Confidence            999999986653 2233344555544445655433

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional

Probab=96.56  E-value=0.012  Score=61.39  Aligned_cols=98  Identities=11%  Similarity=0.068  Sum_probs=64.5

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc--CCCC
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY--DPFK  298 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~l~  298 (359)
                      ++|-|+|.|.+|..++..+.+.|++++++|.|+++++...+.-..     .-.|..++            .+.+  ..++
T Consensus       401 ~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~-----v~~GDat~------------~~~L~~agi~  463 (601)
T PRK03659        401 PQVIIVGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRKYGYK-----VYYGDATQ------------LELLRAAGAE  463 (601)
T ss_pred             CCEEEecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhCCCe-----EEEeeCCC------------HHHHHhcCCc
Confidence            579999999999999999999999999999999987765431000     00010000            0011  2478


Q ss_pred             CccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCC
Q psy9056         299 NADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTS  336 (359)
Q Consensus       299 ~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts  336 (359)
                      ++|.+|.+++++.+- ..+...+.++.++-.|++-..+
T Consensus       464 ~A~~vv~~~~d~~~n-~~i~~~~r~~~p~~~IiaRa~~  500 (601)
T PRK03659        464 KAEAIVITCNEPEDT-MKIVELCQQHFPHLHILARARG  500 (601)
T ss_pred             cCCEEEEEeCCHHHH-HHHHHHHHHHCCCCeEEEEeCC
Confidence            999999999876543 2344445555555456654444

>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2

Probab=96.54  E-value=0.011  Score=55.38  Aligned_cols=98  Identities=16%  Similarity=0.185  Sum_probs=54.3

Q ss_pred             cEEEEECCCcchHHHHHHHHHC--CCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhccccc-ccCc---
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDK--GYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVG-TLSY---  294 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~--G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~-~~~~---  294 (359)
                      ++|++||+|.+-.+.-....+.  |..|..+|++++..+.+.+-++..+ . ..             .++++ +.|.   
T Consensus       122 ~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~-~-L~-------------~~m~f~~~d~~~~  186 (276)
T PF03059_consen  122 SRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDL-G-LS-------------KRMSFITADVLDV  186 (276)
T ss_dssp             -EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH----H-H--------------SSEEEEES-GGGG
T ss_pred             ceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcc-c-cc-------------CCeEEEecchhcc
Confidence            6999999999988776666554  4578999999998777655333110 0 11             12332 1222   


Q ss_pred             -CCCCCccEEEEcccC--CHHHHHHHHHHHHHhCCCCcEEEE
Q psy9056         295 -DPFKNADMVIEAVFE--DINIKHQVIKEIEAVVPPHCVVAT  333 (359)
Q Consensus       295 -~~l~~aD~Vi~avp~--~~~~k~~v~~~l~~~~~~~~ii~s  333 (359)
                       .++.+.|+|+++.-.  +.+-|..++..|.++++++++|+.
T Consensus       187 ~~dl~~~DvV~lAalVg~~~e~K~~Il~~l~~~m~~ga~l~~  228 (276)
T PF03059_consen  187 TYDLKEYDVVFLAALVGMDAEPKEEILEHLAKHMAPGARLVV  228 (276)
T ss_dssp             -GG----SEEEE-TT-S----SHHHHHHHHHHHS-TTSEEEE
T ss_pred             ccccccCCEEEEhhhcccccchHHHHHHHHHhhCCCCcEEEE
Confidence             246889999998743  344588999999999999998764

5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.

>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins

Probab=96.54  E-value=0.013  Score=44.82  Aligned_cols=33  Identities=45%  Similarity=0.660  Sum_probs=29.6

Q ss_pred             CccEEEEECCCcchHHHHHHHHHC-CCeeEEecC
Q psy9056         219 PVKTVAVLGAGLMGAGIAHVTVDK-GYNTIVKDS  251 (359)
Q Consensus       219 ~~~kI~IIG~G~mG~~iA~~l~~~-G~~V~l~d~  251 (359)
                      .-++++|+|+|.+|..++..+.+. +.+|.+||+
T Consensus        22 ~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r   55 (86)
T cd05191          22 KGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR   55 (86)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence            347899999999999999999998 578999987

Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al

>cd07013 S14_ClpP Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease

Probab=96.48  E-value=0.007  Score=52.21  Aligned_cols=77  Identities=17%  Similarity=0.124  Sum_probs=48.0

Q ss_pred             CCCCchHHHHHHhcC--EEEEecCCceEEeccccCCCCCCCcchH---------------hHHhhhcC--hHHHHHHHhc
Q psy9056           1 MFAEPSLATVALACH--YRIVVKDKKTGLGLPEVMLGLLPGAGGT---------------QRLPKLTA--LPNVLDMTLT   61 (359)
Q Consensus         1 ~~a~GgG~~lalacD--~ria~~~~~~~~~~pe~~~Gi~p~~g~~---------------~~l~~~~g--~~~a~~~~lt   61 (359)
                      |.|.++|.-|+++||  .|++.++  ++|.+....-|..-...-.               ..+.+..|  .....+++-.
T Consensus        67 g~aaS~~~~i~~a~~~g~r~~~p~--a~~~ih~~~~~~~g~~~d~~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~  144 (162)
T cd07013          67 GLAASMGSVIAMAGAKGKRFILPN--AMMMIHQPWGGTLGDATDMRIYADLLLKVEGNLVSAYAHKTGQSEEELHADLER  144 (162)
T ss_pred             eehhhHHHHHHHcCCCCcEEEecC--EEEEEccCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHcC
Confidence            467889999999999  5777766  7776544322211000000               01222223  3445566667


Q ss_pred             CCCCCHHHHHHcCCccee
Q psy9056          62 GKTLKADKAKKMGIVDQL   79 (359)
Q Consensus        62 g~~~~a~eA~~~Glv~~~   79 (359)
                      +..|+++||+++||||++
T Consensus       145 ~~~~sa~eA~~~GliD~i  162 (162)
T cd07013         145 DTWLSAREAVEYGFADTI  162 (162)
T ss_pred             CccccHHHHHHcCCCCcC
Confidence            778899999999999975

Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. Additionally, they are implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of proteas

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=96.47  E-value=0.011  Score=57.10  Aligned_cols=33  Identities=33%  Similarity=0.435  Sum_probs=31.1

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCC-eeEEecCCH
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGY-NTIVKDSFE  253 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~-~V~l~d~~~  253 (359)
                      ++|.|||+|.+|+.+|..|++.|+ +++++|.+.
T Consensus        25 ~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~   58 (338)
T PRK12475         25 KHVLIVGAGALGAANAEALVRAGIGKLTIADRDY   58 (338)
T ss_pred             CcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence            689999999999999999999998 899999885

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=96.46  E-value=0.0057  Score=62.08  Aligned_cols=42  Identities=19%  Similarity=0.103  Sum_probs=38.2

Q ss_pred             ccEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHH
Q psy9056         220 VKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLG  261 (359)
Q Consensus       220 ~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~  261 (359)
                      =.+|.|+|+|.+|...+..+...|.+|+++|+++++++.+.+
T Consensus       165 g~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aes  206 (509)
T PRK09424        165 PAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVES  206 (509)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence            379999999999999999999999999999999999887654

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=96.45  E-value=0.0081  Score=53.73  Aligned_cols=33  Identities=24%  Similarity=0.366  Sum_probs=30.8

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCC-eeEEecCCH
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGY-NTIVKDSFE  253 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~-~V~l~d~~~  253 (359)
                      .+|.|||+|.+|+.++..|+..|. +++++|.+.
T Consensus        22 ~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~   55 (202)
T TIGR02356        22 SHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDH   55 (202)
T ss_pred             CCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCE
Confidence            689999999999999999999997 899999883

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]

Probab=96.41  E-value=0.0095  Score=57.16  Aligned_cols=74  Identities=14%  Similarity=0.052  Sum_probs=50.0

Q ss_pred             CCccEEEEECCCcch-HHHHHHHHHCCC---eeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccC
Q psy9056         218 TPVKTVAVLGAGLMG-AGIAHVTVDKGY---NTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLS  293 (359)
Q Consensus       218 ~~~~kI~IIG~G~mG-~~iA~~l~~~G~---~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~  293 (359)
                      +++.||+|||+|.++ ...+..+.+.+.   -|.++|+++++++...+.+..                      -...+|
T Consensus         1 ~~~irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d~~~~~a~~~a~~~~~----------------------~~~~~~   58 (342)
T COG0673           1 MKMIRVGIIGAGGIAGKAHLPALAALGGGLELVAVVDRDPERAEAFAEEFGI----------------------AKAYTD   58 (342)
T ss_pred             CCeeEEEEEcccHHHHHHhHHHHHhCCCceEEEEEecCCHHHHHHHHHHcCC----------------------CcccCC
Confidence            356799999999555 457777777663   477789999987765432210                      023445


Q ss_pred             cC-CCC--CccEEEEcccCCHHH
Q psy9056         294 YD-PFK--NADMVIEAVFEDINI  313 (359)
Q Consensus       294 ~~-~l~--~aD~Vi~avp~~~~~  313 (359)
                      ++ .++  +.|+|++|+|.+...
T Consensus        59 ~~~ll~~~~iD~V~Iatp~~~H~   81 (342)
T COG0673          59 LEELLADPDIDAVYIATPNALHA   81 (342)
T ss_pred             HHHHhcCCCCCEEEEcCCChhhH
Confidence            53 343  479999999988764

>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []

Probab=96.41  E-value=0.0032  Score=60.20  Aligned_cols=95  Identities=16%  Similarity=0.157  Sum_probs=56.6

Q ss_pred             cEEEEECCCcchHHHHHHHHHC-CC-eeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CCC
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDK-GY-NTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DPF  297 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~-G~-~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~l  297 (359)
                      ++++|||+|..+..-+..+... +. +|.+|++++++.++..+.++. +      +           -.+...++. +++
T Consensus       129 ~~l~viGaG~QA~~~~~a~~~~~~i~~v~v~~r~~~~~~~~~~~~~~-~------~-----------~~v~~~~~~~~av  190 (313)
T PF02423_consen  129 RTLGVIGAGVQARWHLRALAAVRPIKEVRVYSRSPERAEAFAARLRD-L------G-----------VPVVAVDSAEEAV  190 (313)
T ss_dssp             -EEEEE--SHHHHHHHHHHHHHS--SEEEEE-SSHHHHHHHHHHHHC-C------C-----------TCEEEESSHHHHH
T ss_pred             ceEEEECCCHHHHHHHHHHHHhCCceEEEEEccChhHHHHHHHhhcc-c------c-----------ccceeccchhhhc
Confidence            6899999999999988876653 33 899999999998887665543 1      1           124445565 578


Q ss_pred             CCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCC
Q psy9056         298 KNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSA  337 (359)
Q Consensus       298 ~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~  337 (359)
                      ++||+|+-|+|.....  .++.  .+.+++++.|....+.
T Consensus       191 ~~aDii~taT~s~~~~--P~~~--~~~l~~g~hi~~iGs~  226 (313)
T PF02423_consen  191 RGADIIVTATPSTTPA--PVFD--AEWLKPGTHINAIGSY  226 (313)
T ss_dssp             TTSSEEEE----SSEE--ESB---GGGS-TT-EEEE-S-S
T ss_pred             ccCCEEEEccCCCCCC--cccc--HHHcCCCcEEEEecCC
Confidence            9999999999866510  1222  2357789988776654

The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.

>COG2910 Putative NADH-flavin reductase [General function prediction only]

Probab=96.40  E-value=0.0066  Score=52.93  Aligned_cols=38  Identities=24%  Similarity=0.335  Sum_probs=35.1

Q ss_pred             cEEEEECC-CcchHHHHHHHHHCCCeeEEecCCHHHHHH
Q psy9056         221 KTVAVLGA-GLMGAGIAHVTVDKGYNTIVKDSFEKGLAR  258 (359)
Q Consensus       221 ~kI~IIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~  258 (359)
                      +||+|||+ |..|+.|+....+.||+|+.+-||+.++..
T Consensus         1 mKIaiIgAsG~~Gs~i~~EA~~RGHeVTAivRn~~K~~~   39 (211)
T COG2910           1 MKIAIIGASGKAGSRILKEALKRGHEVTAIVRNASKLAA   39 (211)
T ss_pred             CeEEEEecCchhHHHHHHHHHhCCCeeEEEEeChHhccc
Confidence            58999997 999999999999999999999999988654

>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit

Probab=96.40  E-value=0.0086  Score=60.72  Aligned_cols=108  Identities=14%  Similarity=0.091  Sum_probs=64.9

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhH-HHHH-hhc----c----CChHHHHhhhccccc
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGL-DGAV-KRK----K----MSALDRDRYLASLVG  290 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l-~~~~-~~~----~----~~~~~~~~~~~~i~~  290 (359)
                      .++.|+|+|.+|...+..+...|..|+++|+++++++.+.. +.... .-.. +.+    .    ++....+.....+  
T Consensus       165 akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~-lGa~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~~~--  241 (511)
T TIGR00561       165 AKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQS-MGAEFLELDFKEEGGSGDGYAKVMSEEFIAAEMELF--  241 (511)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH-cCCeEEeccccccccccccceeecCHHHHHHHHHHH--
Confidence            79999999999999999999999999999999998776543 11100 0000 000    0    0000000000000  


Q ss_pred             ccCcCCCCCccEEEEcc--cCCHHHHHHHHHHHHHhCCCCcEEEEcC
Q psy9056         291 TLSYDPFKNADMVIEAV--FEDINIKHQVIKEIEAVVPPHCVVATNT  335 (359)
Q Consensus       291 ~~~~~~l~~aD~Vi~av--p~~~~~k~~v~~~l~~~~~~~~ii~s~t  335 (359)
                         .+.++++|+||.++  |.... -+-+.++..+.++++.+|++.+
T Consensus       242 ---~e~~~~~DIVI~TalipG~~a-P~Lit~emv~~MKpGsvIVDlA  284 (511)
T TIGR00561       242 ---AAQAKEVDIIITTALIPGKPA-PKLITEEMVDSMKAGSVIVDLA  284 (511)
T ss_pred             ---HHHhCCCCEEEECcccCCCCC-CeeehHHHHhhCCCCCEEEEee
Confidence               13468899999988  22111 0124456667788899887544

In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.

>TIGR01921 DAP-DH diaminopimelate dehydrogenase

Probab=96.38  E-value=0.0067  Score=57.98  Aligned_cols=67  Identities=12%  Similarity=0.188  Sum_probs=45.7

Q ss_pred             ccEEEEECCCcchHHHHHHHHHC-CCeeE-EecCCH-HHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-C
Q psy9056         220 VKTVAVLGAGLMGAGIAHVTVDK-GYNTI-VKDSFE-KGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-D  295 (359)
Q Consensus       220 ~~kI~IIG~G~mG~~iA~~l~~~-G~~V~-l~d~~~-~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~  295 (359)
                      .-||+|||+|+||..++..+.++ +.+++ ++|+++ +.+..           ..               ....+.+. +
T Consensus         3 kIRVgIVG~GnIGr~~a~al~~~pd~ELVgV~dr~~~~~~~~-----------~~---------------~v~~~~d~~e   56 (324)
T TIGR01921         3 KIRAAIVGYGNLGRSVEKAIQQQPDMELVGVFSRRGAETLDT-----------ET---------------PVYAVADDEK   56 (324)
T ss_pred             CcEEEEEeecHHHHHHHHHHHhCCCcEEEEEEcCCcHHHHhh-----------cC---------------CccccCCHHH
Confidence            35999999999999999988776 67866 579985 32110           00               01112233 3


Q ss_pred             CCCCccEEEEcccCCHH
Q psy9056         296 PFKNADMVIEAVFEDIN  312 (359)
Q Consensus       296 ~l~~aD~Vi~avp~~~~  312 (359)
                      .+.+.|+|++|+|....
T Consensus        57 ~l~~iDVViIctPs~th   73 (324)
T TIGR01921        57 HLDDVDVLILCMGSATD   73 (324)
T ss_pred             hccCCCEEEEcCCCccC
Confidence            46789999999997664

This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.

>PRK02318 mannitol-1-phosphate 5-dehydrogenase; Provisional

Probab=96.34  E-value=0.0047  Score=60.72  Aligned_cols=41  Identities=20%  Similarity=0.308  Sum_probs=35.1

Q ss_pred             cEEEEECCCcchHHH-HHHHHHCCCeeEEecCCHHHHHHHHH
Q psy9056         221 KTVAVLGAGLMGAGI-AHVTVDKGYNTIVKDSFEKGLARGLG  261 (359)
Q Consensus       221 ~kI~IIG~G~mG~~i-A~~l~~~G~~V~l~d~~~~~l~~~~~  261 (359)
                      +||.++|+|++|++. ...+.+.|++|+++|++++.++.+..
T Consensus         1 mki~~~GaGa~gr~~~~~~l~~~g~~V~~vd~~~~~v~aL~~   42 (381)
T PRK02318          1 MKAVHFGAGNIGRGFIGKLLADNGFEVTFVDVNQELIDALNK   42 (381)
T ss_pred             CceEEECCchhhHHHHHHHHHhCCCeEEEEECCHHHHHHHhc
Confidence            379999999999966 78888999999999999887776544

>PRK14512 ATP-dependent Clp protease proteolytic subunit; Provisional

Probab=96.33  E-value=0.012  Score=52.44  Aligned_cols=81  Identities=23%  Similarity=0.174  Sum_probs=52.8

Q ss_pred             CCCCchHHHHHHhcCE--EEEecCCceEEeccccCCCCCCCcch---------------HhHHhhhcC--hHHHHHHHhc
Q psy9056           1 MFAEPSLATVALACHY--RIVVKDKKTGLGLPEVMLGLLPGAGG---------------TQRLPKLTA--LPNVLDMTLT   61 (359)
Q Consensus         1 ~~a~GgG~~lalacD~--ria~~~~~~~~~~pe~~~Gi~p~~g~---------------~~~l~~~~g--~~~a~~~~lt   61 (359)
                      |.|...|..|+++||.  |++.++  ++|-+-...-|+.-...-               ...+....|  .....+++-.
T Consensus        90 G~AaSaaslIl~ag~~~~R~~~p~--s~imiHqP~~~~~G~a~di~~~a~~l~~~~~~i~~~~a~~tg~~~~~i~~~~~~  167 (197)
T PRK14512         90 GLVASAAALIFLAAKKESRFSLPN--ARYLLHQPLSGFKGVATDIEIYANELNKVKSELNDIIAKETGQELDKVEKDTDR  167 (197)
T ss_pred             eeeHhHHHHHHhcCCcCceeECCC--CcEEEEcCccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHhhhc
Confidence            5688899999999985  888887  777666554332111110               011222222  2344455555


Q ss_pred             CCCCCHHHHHHcCCcceecCCC
Q psy9056          62 GKTLKADKAKKMGIVDQLVEPL   83 (359)
Q Consensus        62 g~~~~a~eA~~~Glv~~~~~~~   83 (359)
                      ...++++||+++||+|+++++.
T Consensus       168 d~~lta~EA~~yGliD~I~~~~  189 (197)
T PRK14512        168 DFWLDSSSAVKYGLVFEVVETR  189 (197)
T ss_pred             CcccCHHHHHHcCCccEeecCc
Confidence            6779999999999999999873

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=96.28  E-value=0.0075  Score=45.28  Aligned_cols=35  Identities=23%  Similarity=0.449  Sum_probs=32.6

Q ss_pred             EEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHH
Q psy9056         222 TVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGL  256 (359)
Q Consensus       222 kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l  256 (359)
                      ||.|||+|.+|.-+|..+.+.|.+|+++++++.-.
T Consensus         1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~   35 (80)
T PF00070_consen    1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLL   35 (80)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhh
Confidence            68999999999999999999999999999988655

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>cd05295 MDH_like Malate dehydrogenase-like

Probab=96.26  E-value=0.029  Score=56.06  Aligned_cols=122  Identities=12%  Similarity=0.006  Sum_probs=80.3

Q ss_pred             cEEEEECC-CcchHHHHHHHHHC---CC----eeEEecC--CHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhccccc
Q psy9056         221 KTVAVLGA-GLMGAGIAHVTVDK---GY----NTIVKDS--FEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVG  290 (359)
Q Consensus       221 ~kI~IIG~-G~mG~~iA~~l~~~---G~----~V~l~d~--~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~  290 (359)
                      -+|.|-|+ |.+|-++...++.-   |.    .++|+|+  +.+.++.....+++.....              +..+.+
T Consensus       124 ~~V~vtgAag~i~Y~l~~~ia~G~~fG~~~~v~L~LlDi~~~~~~l~G~amDL~D~a~pl--------------l~~v~i  189 (452)
T cd05295         124 LQVCITNASAPLCYHLIPSLASGEVFGMEEEISIHLLDSPENLEKLKGLVMEVEDLAFPL--------------LRGISV  189 (452)
T ss_pred             eEEEEecCcHHHHHHHHHHHhCCcccCCCCeEEEEEEcCCCchhhHHHHHHHHHHhHHhh--------------cCCcEE
Confidence            48999996 99999999999874   32    5888999  6777776665555433211              112333


Q ss_pred             -ccCcCCCCCccEEEEccc--------------CCHHHHHHHHHHHHHhCCC-CcEEEEcCCCCc--HHHHHhhc-CC-C
Q psy9056         291 -TLSYDPFKNADMVIEAVF--------------EDINIKHQVIKEIEAVVPP-HCVVATNTSAIP--ITKIAAAS-KR-P  350 (359)
Q Consensus       291 -~~~~~~l~~aD~Vi~avp--------------~~~~~k~~v~~~l~~~~~~-~~ii~s~ts~~~--~~~l~~~~-~~-~  350 (359)
                       +++++++++||+||++.-              .+..+.+.+.+.|.++.++ ..|++..|+...  ...+.... +. +
T Consensus       190 ~~~~~ea~~daDvvIitag~prk~G~~R~DLL~~N~~Ifk~~g~~I~~~a~~~~~VlVv~tNPvD~~t~i~~k~apgiP~  269 (452)
T cd05295         190 TTDLDVAFKDAHVIVLLDDFLIKEGEDLEGCIRSRVAICQLYGPLIEKNAKEDVKVIVAGRTFLNLKTSILIKYAPSIPR  269 (452)
T ss_pred             EECCHHHhCCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEeCCcHHHHHHHHHHHcCCCCH
Confidence             455688999999998662              1344666777888888773 445555555443  33444555 44 4


Q ss_pred             CcEEee
Q psy9056         351 DKVRNM  356 (359)
Q Consensus       351 ~rvig~  356 (359)
                      +||+|+
T Consensus       270 ~rVig~  275 (452)
T cd05295         270 KNIIAV  275 (452)
T ss_pred             HHEEEe
Confidence            789886

These MDH-like proteins are related to other groups in the MDH family but do not have conserved substrate and cofactor binding residues. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subgroup are uncharacterized MDH-like proteins from animals. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase

Probab=96.24  E-value=0.025  Score=61.94  Aligned_cols=84  Identities=18%  Similarity=0.153  Sum_probs=55.8

Q ss_pred             CCCccEEEEECCCcchHHHHHHHHHCC-Ce-------------eEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHH
Q psy9056         217 QTPVKTVAVLGAGLMGAGIAHVTVDKG-YN-------------TIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRD  282 (359)
Q Consensus       217 ~~~~~kI~IIG~G~mG~~iA~~l~~~G-~~-------------V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~  282 (359)
                      ..++++|+|||+|.||...+..+++.. ++             |.+.|++.+.++...+.+.         + ..     
T Consensus       566 ~~~~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~~---------~-~~-----  630 (1042)
T PLN02819        566 TKKSQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGIE---------N-AE-----  630 (1042)
T ss_pred             cccCCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhcC---------C-Cc-----
Confidence            356889999999999999999998763 33             9999999987665433210         0 00     


Q ss_pred             hhhccccc-ccCc----CCCCCccEEEEcccCCHHHHHHHHHHH
Q psy9056         283 RYLASLVG-TLSY----DPFKNADMVIEAVFEDINIKHQVIKEI  321 (359)
Q Consensus       283 ~~~~~i~~-~~~~----~~l~~aD~Vi~avp~~~~~k~~v~~~l  321 (359)
                          -+.. .+|.    +.++++|+||.|+|.....  .+.+..
T Consensus       631 ----~v~lDv~D~e~L~~~v~~~DaVIsalP~~~H~--~VAkaA  668 (1042)
T PLN02819        631 ----AVQLDVSDSESLLKYVSQVDVVISLLPASCHA--VVAKAC  668 (1042)
T ss_pred             ----eEEeecCCHHHHHHhhcCCCEEEECCCchhhH--HHHHHH
Confidence                0111 1222    2347799999999986643  444443

>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]

Probab=96.23  E-value=0.017  Score=54.40  Aligned_cols=98  Identities=15%  Similarity=0.154  Sum_probs=64.3

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCC-eeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcCCCCC
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGY-NTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPFKN  299 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~-~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~  299 (359)
                      ++|.|+|+|-.+.+++..|++.|. +|++++|+.++.+++.+.+...-.      ..          ......+.+...+
T Consensus       127 ~~vlilGAGGAarAv~~aL~~~g~~~i~V~NRt~~ra~~La~~~~~~~~------~~----------~~~~~~~~~~~~~  190 (283)
T COG0169         127 KRVLILGAGGAARAVAFALAEAGAKRITVVNRTRERAEELADLFGELGA------AV----------EAAALADLEGLEE  190 (283)
T ss_pred             CEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhccc------cc----------ccccccccccccc
Confidence            789999999999999999999995 899999999998876654442110      00          0001112223336


Q ss_pred             ccEEEEcccCCHHHHH-H-HHHHHHHhCCCCcEEEEcCC
Q psy9056         300 ADMVIEAVFEDINIKH-Q-VIKEIEAVVPPHCVVATNTS  336 (359)
Q Consensus       300 aD~Vi~avp~~~~~k~-~-v~~~l~~~~~~~~ii~s~ts  336 (359)
                      +|+||.|+|-...... . .+.  ...++++.++.+.-.
T Consensus       191 ~dliINaTp~Gm~~~~~~~~~~--~~~l~~~~~v~D~vY  227 (283)
T COG0169         191 ADLLINATPVGMAGPEGDSPVP--AELLPKGAIVYDVVY  227 (283)
T ss_pred             cCEEEECCCCCCCCCCCCCCCc--HHhcCcCCEEEEecc
Confidence            8999999986554321 1 122  445667777765443

>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.21  E-value=0.01  Score=55.78  Aligned_cols=93  Identities=19%  Similarity=0.180  Sum_probs=65.1

Q ss_pred             hhhHHHHHhHhhhhhhhhcCCCCCCCCccEEEEECCCcc-hHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHH
Q psy9056         193 PQSKGLMGLFRAQTECKKNRLGKPQTPVKTVAVLGAGLM-GAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAV  271 (359)
Q Consensus       193 ~~~~~~~~af~~k~~~~~~~~~~~~~~~~kI~IIG~G~m-G~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~  271 (359)
                      |-+..++-.++++..-.        -.=++|.|||.|.+ |.+++..|.+.|..|++++.....++              
T Consensus       139 PcTp~aii~lL~~~~i~--------l~Gk~vvViGrs~iVGkPla~lL~~~~atVt~~hs~t~~l~--------------  196 (285)
T PRK14189        139 PCTPYGVMKMLESIGIP--------LRGAHAVVIGRSNIVGKPMAMLLLQAGATVTICHSKTRDLA--------------  196 (285)
T ss_pred             CCCHHHHHHHHHHcCCC--------CCCCEEEEECCCCccHHHHHHHHHHCCCEEEEecCCCCCHH--------------
Confidence            44566777777665421        12279999998776 99999999999999999764321111              


Q ss_pred             hhccCChHHHHhhhcccccccCcCCCCCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCC
Q psy9056         272 KRKKMSALDRDRYLASLVGTLSYDPFKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSA  337 (359)
Q Consensus       272 ~~~~~~~~~~~~~~~~i~~~~~~~~l~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~  337 (359)
                                             +.++++|+||.+++..-     ++..  +++++++++++....
T Consensus       197 -----------------------~~~~~ADIVV~avG~~~-----~i~~--~~ik~gavVIDVGin  232 (285)
T PRK14189        197 -----------------------AHTRQADIVVAAVGKRN-----VLTA--DMVKPGATVIDVGMN  232 (285)
T ss_pred             -----------------------HHhhhCCEEEEcCCCcC-----ccCH--HHcCCCCEEEEcccc
Confidence                                   34789999999998332     3332  568899998876543

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=96.20  E-value=0.019  Score=49.31  Aligned_cols=32  Identities=25%  Similarity=0.231  Sum_probs=29.7

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCCeeEEecCC
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSF  252 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~  252 (359)
                      ++|.|||+|.+|...+..|...|++|++++.+
T Consensus        14 ~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp~   45 (157)
T PRK06719         14 KVVVIIGGGKIAYRKASGLKDTGAFVTVVSPE   45 (157)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEcCc
Confidence            78999999999999999999999999999643

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional

Probab=96.16  E-value=0.054  Score=56.74  Aligned_cols=97  Identities=14%  Similarity=0.105  Sum_probs=62.7

Q ss_pred             ccEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc--CCC
Q psy9056         220 VKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY--DPF  297 (359)
Q Consensus       220 ~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~l  297 (359)
                      -++|-|+|.|.+|..++..+.+.|++++++|.|+++++...+.-.     ..-.|..++            .+.+  ..+
T Consensus       400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~-----~v~~GDat~------------~~~L~~agi  462 (621)
T PRK03562        400 QPRVIIAGFGRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRKFGM-----KVFYGDATR------------MDLLESAGA  462 (621)
T ss_pred             cCcEEEEecChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhcCC-----eEEEEeCCC------------HHHHHhcCC
Confidence            368999999999999999999999999999999998887643100     000010000            0001  247


Q ss_pred             CCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEc
Q psy9056         298 KNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATN  334 (359)
Q Consensus       298 ~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~  334 (359)
                      +++|.+|.+++++..- ..+.....++.++-.|++-.
T Consensus       463 ~~A~~vvv~~~d~~~n-~~i~~~ar~~~p~~~iiaRa  498 (621)
T PRK03562        463 AKAEVLINAIDDPQTS-LQLVELVKEHFPHLQIIARA  498 (621)
T ss_pred             CcCCEEEEEeCCHHHH-HHHHHHHHHhCCCCeEEEEE
Confidence            8999999999765532 23334455554444455533

>PRK06199 ornithine cyclodeaminase; Validated

Probab=96.16  E-value=0.013  Score=57.57  Aligned_cols=76  Identities=20%  Similarity=0.185  Sum_probs=55.1

Q ss_pred             CccEEEEECCCcchHHHHHHHHHC--CC-eeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-
Q psy9056         219 PVKTVAVLGAGLMGAGIAHVTVDK--GY-NTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-  294 (359)
Q Consensus       219 ~~~kI~IIG~G~mG~~iA~~l~~~--G~-~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-  294 (359)
                      ..++++|||+|.++......+...  +. +|.+|++++++.+...+.+...+.     +.          ..+...++. 
T Consensus       154 da~~l~iiG~G~QA~~~l~a~~~v~~~i~~V~v~~r~~~~a~~f~~~~~~~~~-----~~----------~~v~~~~s~~  218 (379)
T PRK06199        154 DSKVVGLLGPGVMGKTILAAFMAVCPGIDTIKIKGRGQKSLDSFATWVAETYP-----QI----------TNVEVVDSIE  218 (379)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcC-----CC----------ceEEEeCCHH
Confidence            347999999999999999888763  23 899999999998877655442110     00          013445555 


Q ss_pred             CCCCCccEEEEcccC
Q psy9056         295 DPFKNADMVIEAVFE  309 (359)
Q Consensus       295 ~~l~~aD~Vi~avp~  309 (359)
                      +++++||+|+-|++.
T Consensus       219 eav~~ADIVvtaT~s  233 (379)
T PRK06199        219 EVVRGSDIVTYCNSG  233 (379)
T ss_pred             HHHcCCCEEEEccCC
Confidence            568999999999964

>TIGR00036 dapB dihydrodipicolinate reductase

Probab=96.15  E-value=0.018  Score=53.80  Aligned_cols=101  Identities=14%  Similarity=0.091  Sum_probs=55.4

Q ss_pred             cEEEEEC-CCcchHHHHHHHHHC-CCee-EEecCC-HHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcCC
Q psy9056         221 KTVAVLG-AGLMGAGIAHVTVDK-GYNT-IVKDSF-EKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDP  296 (359)
Q Consensus       221 ~kI~IIG-~G~mG~~iA~~l~~~-G~~V-~l~d~~-~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  296 (359)
                      .||+|+| +|.||..++..+.+. ++++ .++|+. ++....   ...    ...  +. .       ...+.++++++.
T Consensus         2 ikV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~~~~~~~~~---~~~----~~~--~~-~-------~~gv~~~~d~~~   64 (266)
T TIGR00036         2 IKVAVAGAAGRMGRELIKAALAAEGLQLVAAFERHGSSLQGT---DAG----ELA--GI-G-------KVGVPVTDDLEA   64 (266)
T ss_pred             eEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccCC---CHH----Hhc--Cc-C-------cCCceeeCCHHH
Confidence            5899999 599999999999864 6765 446743 322110   000    000  00 0       012344556644


Q ss_pred             C-CCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCcHHHH
Q psy9056         297 F-KNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPITKI  343 (359)
Q Consensus       297 l-~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~l  343 (359)
                      + ..+|+||+++|...  .........   ..++-+++.+++++.++.
T Consensus        65 l~~~~DvVIdfT~p~~--~~~~~~~al---~~g~~vVigttg~~~e~~  107 (266)
T TIGR00036        65 VETDPDVLIDFTTPEG--VLNHLKFAL---EHGVRLVVGTTGFSEEDK  107 (266)
T ss_pred             hcCCCCEEEECCChHH--HHHHHHHHH---HCCCCEEEECCCCCHHHH
Confidence            3 45899999996443  334444333   344534444457765443

>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated

Probab=96.12  E-value=0.016  Score=56.10  Aligned_cols=98  Identities=13%  Similarity=0.190  Sum_probs=57.7

Q ss_pred             ccEEEEECC-CcchHHHHHHHHHC-CCeeEE-ecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcC-
Q psy9056         220 VKTVAVLGA-GLMGAGIAHVTVDK-GYNTIV-KDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYD-  295 (359)
Q Consensus       220 ~~kI~IIG~-G~mG~~iA~~l~~~-G~~V~l-~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~-  295 (359)
                      |.||+|||+ |.+|..++..+.++ +++++. .++ .+.-+......    .. .  ...         .... .++++ 
T Consensus         2 m~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~-~~~g~~l~~~~----~~-~--~~~---------~~~~-~~~~~~   63 (343)
T PRK00436          2 MIKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSR-SSAGKPLSDVH----PH-L--RGL---------VDLV-LEPLDP   63 (343)
T ss_pred             CeEEEEECCCCHHHHHHHHHHHcCCCceEEEEECc-cccCcchHHhC----cc-c--ccc---------cCce-eecCCH
Confidence            469999997 99999999999887 567655 453 22111111100    00 0  000         0001 11121 


Q ss_pred             -CCCCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCcH
Q psy9056         296 -PFKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPI  340 (359)
Q Consensus       296 -~l~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~  340 (359)
                       ...++|+|+.|+|....  .++...+.+   .++.|+++++....
T Consensus        64 ~~~~~vD~Vf~alP~~~~--~~~v~~a~~---aG~~VID~S~~fR~  104 (343)
T PRK00436         64 EILAGADVVFLALPHGVS--MDLAPQLLE---AGVKVIDLSADFRL  104 (343)
T ss_pred             HHhcCCCEEEECCCcHHH--HHHHHHHHh---CCCEEEECCcccCC
Confidence             34679999999998663  355555433   57888899987655

>CHL00028 clpP ATP-dependent Clp protease proteolytic subunit

Probab=96.10  E-value=0.014  Score=52.20  Aligned_cols=80  Identities=15%  Similarity=0.106  Sum_probs=54.8

Q ss_pred             CCCCchHHHHHHhcC--EEEEecCCceEEeccccCCCCCCCcch----------------HhHHhhhcCh--HHHHHHHh
Q psy9056           1 MFAEPSLATVALACH--YRIVVKDKKTGLGLPEVMLGLLPGAGG----------------TQRLPKLTAL--PNVLDMTL   60 (359)
Q Consensus         1 ~~a~GgG~~lalacD--~ria~~~~~~~~~~pe~~~Gi~p~~g~----------------~~~l~~~~g~--~~a~~~~l   60 (359)
                      |.|.+.|..|++++|  .|++.++  ++|-+-....|+.-+...                ...+....|.  ....+++-
T Consensus        97 G~AaS~aslIl~aG~kg~R~~~p~--s~imiHqp~~~~~~G~a~di~~~a~~l~~~~~~~~~~ya~~Tg~~~e~i~~~~~  174 (200)
T CHL00028         97 GLAASMASFILAGGEITKRLAFPH--ARVMIHQPASSFYEGQASEFVLEAEELLKLRETITRVYAQRTGKPLWVISEDME  174 (200)
T ss_pred             EehHHHHHHHHhCCCCCCEEecCC--CeEEEecCccCcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhh
Confidence            467788999999998  6999988  888888776553221110                1222223332  34445555


Q ss_pred             cCCCCCHHHHHHcCCcceecCC
Q psy9056          61 TGKTLKADKAKKMGIVDQLVEP   82 (359)
Q Consensus        61 tg~~~~a~eA~~~Glv~~~~~~   82 (359)
                      ....++|+||+++||+|+++.+
T Consensus       175 r~~~lta~EA~eyGliD~I~~~  196 (200)
T CHL00028        175 RDVFMSATEAKAYGIVDLVAVN  196 (200)
T ss_pred             cCccCCHHHHHHcCCCcEEeec
Confidence            6667999999999999999976

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=96.07  E-value=0.029  Score=50.22  Aligned_cols=33  Identities=21%  Similarity=0.253  Sum_probs=30.7

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCCeeEEecCCH
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFE  253 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~  253 (359)
                      ++|.|||+|.+|...+..|.+.|.+|++++++.
T Consensus        11 k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~~   43 (202)
T PRK06718         11 KRVVIVGGGKVAGRRAITLLKYGAHIVVISPEL   43 (202)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEEcCCC
Confidence            799999999999999999999999999998653

>PRK12409 D-amino acid dehydrogenase small subunit; Provisional

Probab=96.07  E-value=0.0058  Score=60.39  Aligned_cols=34  Identities=32%  Similarity=0.569  Sum_probs=32.1

Q ss_pred             ccEEEEECCCcchHHHHHHHHHCCCeeEEecCCH
Q psy9056         220 VKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFE  253 (359)
Q Consensus       220 ~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~  253 (359)
                      |.+|.|||+|.+|.++|..|++.|++|+++|+++
T Consensus         1 ~~~vvIIGaG~~G~~~A~~La~~g~~V~vle~~~   34 (410)
T PRK12409          1 MSHIAVIGAGITGVTTAYALAQRGYQVTVFDRHR   34 (410)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            4699999999999999999999999999999875

>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A

Probab=96.06  E-value=0.016  Score=47.09  Aligned_cols=80  Identities=19%  Similarity=0.234  Sum_probs=53.1

Q ss_pred             cEEEEEC----CCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcCC
Q psy9056         221 KTVAVLG----AGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDP  296 (359)
Q Consensus       221 ~kI~IIG----~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  296 (359)
                      |+|+|||    -+.+|..+...+.++|++|+.++...+.+                             ..+.+..++++
T Consensus         1 ksiAVvGaS~~~~~~g~~v~~~l~~~G~~v~~Vnp~~~~i-----------------------------~G~~~y~sl~e   51 (116)
T PF13380_consen    1 KSIAVVGASDNPGKFGYRVLRNLKAAGYEVYPVNPKGGEI-----------------------------LGIKCYPSLAE   51 (116)
T ss_dssp             -EEEEET--SSTTSHHHHHHHHHHHTT-EEEEESTTCSEE-----------------------------TTEE-BSSGGG
T ss_pred             CEEEEEcccCCCCChHHHHHHHHHhCCCEEEEECCCceEE-----------------------------CcEEeeccccC
Confidence            5899999    58899999999999999999998765321                             12334444433


Q ss_pred             C-CCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEE
Q psy9056         297 F-KNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVA  332 (359)
Q Consensus       297 l-~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~  332 (359)
                      . ...|++++++|.+.  ..++++++.+. +-..+++
T Consensus        52 ~p~~iDlavv~~~~~~--~~~~v~~~~~~-g~~~v~~   85 (116)
T PF13380_consen   52 IPEPIDLAVVCVPPDK--VPEIVDEAAAL-GVKAVWL   85 (116)
T ss_dssp             CSST-SEEEE-S-HHH--HHHHHHHHHHH-T-SEEEE
T ss_pred             CCCCCCEEEEEcCHHH--HHHHHHHHHHc-CCCEEEE
Confidence            3 78999999997444  66888888776 3445544

>TIGR00493 clpP ATP-dependent Clp protease, proteolytic subunit ClpP

Probab=96.06  E-value=0.02  Score=50.73  Aligned_cols=79  Identities=18%  Similarity=0.130  Sum_probs=52.6

Q ss_pred             CCCCchHHHHHHhcC--EEEEecCCceEEeccccCCCCCCCcchH---------------hHHhhhcCh--HHHHHHHhc
Q psy9056           1 MFAEPSLATVALACH--YRIVVKDKKTGLGLPEVMLGLLPGAGGT---------------QRLPKLTAL--PNVLDMTLT   61 (359)
Q Consensus         1 ~~a~GgG~~lalacD--~ria~~~~~~~~~~pe~~~Gi~p~~g~~---------------~~l~~~~g~--~~a~~~~lt   61 (359)
                      |.|...|..|++++|  .|++.++  ++|.+-+..-|......-.               ..+....|.  ....+++-.
T Consensus        93 G~AaSaaslI~~aG~~~~r~~~p~--s~imiH~p~~~~~G~a~d~~~~a~~l~~~~~~~~~~ya~~tg~~~~~i~~~~~~  170 (191)
T TIGR00493        93 GQAASMGAFLLSAGAKGKRFSLPN--SRIMIHQPLGGAQGQASDIEIQANEILRLKGLLNDILANHTGQSLEQIEKDTER  170 (191)
T ss_pred             EeeccHHHHHHhcCCCCcEEecCC--ceEEEecCcccccCCcchhHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhhC
Confidence            457777888888655  6999988  8888877654332111111               113333332  455566667


Q ss_pred             CCCCCHHHHHHcCCcceecC
Q psy9056          62 GKTLKADKAKKMGIVDQLVE   81 (359)
Q Consensus        62 g~~~~a~eA~~~Glv~~~~~   81 (359)
                      +..++++||+++||+|+++.
T Consensus       171 ~~~lta~EA~~~GliD~ii~  190 (191)
T TIGR00493       171 DFFMSAEEAKEYGLIDSVLT  190 (191)
T ss_pred             CccCcHHHHHHcCCccEEec
Confidence            78899999999999999875

This model for the proteolytic subunit ClpP has been rebuilt to a higher stringency. In every bacterial genome with the ClpXP machine, a ClpP protein will be found that scores with this model. In general, this ClpP member will be encoded adjacent to the clpX gene, as were all examples used in the seed alignment. A large fraction of genomes have one or more additional ClpP paralogs, sometimes encoded nearby and sometimes elsewhere. The stringency of the trusted cutoff used here excludes the more divergent ClpP paralogs from being called authentic ClpP by this model.

>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase

Probab=96.05  E-value=0.011  Score=58.02  Aligned_cols=39  Identities=31%  Similarity=0.406  Sum_probs=32.7

Q ss_pred             EEEECCCcchHHHHHHHHHCCC--eeEEecCCHHHHHHHHH
Q psy9056         223 VAVLGAGLMGAGIAHVTVDKGY--NTIVKDSFEKGLARGLG  261 (359)
Q Consensus       223 I~IIG~G~mG~~iA~~l~~~G~--~V~l~d~~~~~l~~~~~  261 (359)
                      |.|+|+|.+|..++..|++.+.  +|++.|++.++++....
T Consensus         1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~   41 (386)
T PF03435_consen    1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNPEKAERLAE   41 (386)
T ss_dssp             EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT
T ss_pred             CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHh
Confidence            7899999999999999999974  89999999998777543

Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.

>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]

Probab=96.04  E-value=0.0087  Score=56.25  Aligned_cols=111  Identities=23%  Similarity=0.288  Sum_probs=73.3

Q ss_pred             HhhhhhhhhcCC--CCCCCCccEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChH
Q psy9056         202 FRAQTECKKNRL--GKPQTPVKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSAL  279 (359)
Q Consensus       202 f~~k~~~~~~~~--~~~~~~~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~  279 (359)
                      |++|.+-.++-+  +.|--.-.+|.|||.|.+|+--|+....-|-+|++.|+|.+++...-..+.               
T Consensus       148 ~lek~~GG~GvllgGvpGV~~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~---------------  212 (371)
T COG0686         148 YLEKTNGGKGVLLGGVPGVLPAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFG---------------  212 (371)
T ss_pred             HHHhccCCceeEecCCCCCCCccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhC---------------
Confidence            566655333211  233223368999999999999999999999999999999998765432221               


Q ss_pred             HHHhhhcccc----cccCc-CCCCCccEEEEcc--cCCHHHHHHHHHHHHHhCCCCcEEEEc
Q psy9056         280 DRDRYLASLV----GTLSY-DPFKNADMVIEAV--FEDINIKHQVIKEIEAVVPPHCVVATN  334 (359)
Q Consensus       280 ~~~~~~~~i~----~~~~~-~~l~~aD~Vi~av--p~~~~~k~~v~~~l~~~~~~~~ii~s~  334 (359)
                            .++.    ....+ +.+..+|+||-++  |...+ =+-+.+++.+.++++.+|++.
T Consensus       213 ------~rv~~~~st~~~iee~v~~aDlvIgaVLIpgaka-PkLvt~e~vk~MkpGsVivDV  267 (371)
T COG0686         213 ------GRVHTLYSTPSNIEEAVKKADLVIGAVLIPGAKA-PKLVTREMVKQMKPGSVIVDV  267 (371)
T ss_pred             ------ceeEEEEcCHHHHHHHhhhccEEEEEEEecCCCC-ceehhHHHHHhcCCCcEEEEE
Confidence                  1211    11122 5689999999776  32111 224567778888999988763

>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

Probab=96.02  E-value=0.026  Score=54.59  Aligned_cols=33  Identities=30%  Similarity=0.438  Sum_probs=31.1

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCC-eeEEecCCH
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGY-NTIVKDSFE  253 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~-~V~l~d~~~  253 (359)
                      .+|.|||+|.+|+.+|..|+..|. +|+++|.+.
T Consensus        25 ~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~   58 (339)
T PRK07688         25 KHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDY   58 (339)
T ss_pred             CcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCc
Confidence            689999999999999999999999 899999874

>KOG2653|consensus

Probab=95.99  E-value=0.019  Score=54.87  Aligned_cols=98  Identities=17%  Similarity=0.287  Sum_probs=69.5

Q ss_pred             CccEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcC---
Q psy9056         219 PVKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYD---  295 (359)
Q Consensus       219 ~~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~---  295 (359)
                      +...|+.||.+.||-.++..++.+|+.|..|+|...+.++....-.       +..            .+....+.+   
T Consensus         5 ~~~digLiGLaVMGqnLiLN~~d~Gf~v~~yNRT~skvD~flanea-------k~~------------~i~ga~S~ed~v   65 (487)
T KOG2653|consen    5 PKADIGLIGLAVMGQNLILNIADKGFTVCAYNRTTSKVDEFLANEA-------KGT------------KIIGAYSLEDFV   65 (487)
T ss_pred             cccchhhhhHhhhhhhhhhcccccCceEEEeccchHhHHHHHHHhh-------cCC------------cccCCCCHHHHH
Confidence            4468999999999999999999999999999999999887654221       111            122222322   


Q ss_pred             -CCCCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCC
Q psy9056         296 -PFKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTS  336 (359)
Q Consensus       296 -~l~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts  336 (359)
                       .++..-.|+..+-.-. .+...+++|.+++.++.||++..+
T Consensus        66 ~klk~PR~iillvkAG~-pVD~~I~~L~p~LekgDiIIDGGN  106 (487)
T KOG2653|consen   66 SKLKKPRVIILLVKAGA-PVDQFIEELVPYLEKGDIIIDGGN  106 (487)
T ss_pred             HhcCCCcEEEEEeeCCC-cHHHHHHHHHhhcCCCCEEEeCCc
Confidence             3455666666553222 256778999999999999987554

>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2

Probab=95.97  E-value=0.021  Score=52.05  Aligned_cols=32  Identities=34%  Similarity=0.483  Sum_probs=30.2

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCC---eeEEecCC
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGY---NTIVKDSF  252 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~---~V~l~d~~  252 (359)
                      ++|.|+|+|.+|.+++..+...|.   +|+++|++
T Consensus        26 ~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~   60 (226)
T cd05311          26 VKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSK   60 (226)
T ss_pred             CEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCC
Confidence            589999999999999999999997   59999999

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.92  E-value=0.071  Score=53.40  Aligned_cols=34  Identities=35%  Similarity=0.461  Sum_probs=32.1

Q ss_pred             ccEEEEECCCcchHHHHHHHHHCCCeeEEecCCH
Q psy9056         220 VKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFE  253 (359)
Q Consensus       220 ~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~  253 (359)
                      -++|.|+|+|.+|.++|..|++.|++|+++|++.
T Consensus         5 ~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~   38 (450)
T PRK14106          5 GKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKE   38 (450)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            3789999999999999999999999999999985

>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional

Probab=95.92  E-value=0.025  Score=54.79  Aligned_cols=106  Identities=14%  Similarity=0.080  Sum_probs=56.2

Q ss_pred             ccEEEEECCCcchHHHHHHHHHC-CCeeE-EecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhh-cccccccCcC-
Q psy9056         220 VKTVAVLGAGLMGAGIAHVTVDK-GYNTI-VKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYL-ASLVGTLSYD-  295 (359)
Q Consensus       220 ~~kI~IIG~G~mG~~iA~~l~~~-G~~V~-l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~i~~~~~~~-  295 (359)
                      |.||+|+|+|.||..++..+..+ +.+|+ +.|.+++..+....+..  ++.+   +.. +....... ..+.+..+.+ 
T Consensus         1 ~ikVaI~G~GrIGr~va~al~~~~d~eLvav~d~~~~~~~~la~~~G--~~~~---~~~-~~~~~~~~~~~i~V~~~~~e   74 (341)
T PRK04207          1 MIKVGVNGYGTIGKRVADAVAAQPDMELVGVAKTKPDYEARVAVEKG--YPLY---VAD-PEREKAFEEAGIPVAGTIED   74 (341)
T ss_pred             CeEEEEECCCHHHHHHHHHHhcCCCcEEEEEECCChHHHHHHHHhcC--CCcc---ccC-ccccccccCCceEEcCChhH
Confidence            35899999999999999988765 45654 44666544333222110  1000   000 00000000 1244444443 


Q ss_pred             CCCCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCC
Q psy9056         296 PFKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTS  336 (359)
Q Consensus       296 ~l~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts  336 (359)
                      .+.++|+||+|+|.....  .......   ..++.++++++
T Consensus        75 l~~~vDVVIdaT~~~~~~--e~a~~~~---~aGk~VI~~~~  110 (341)
T PRK04207         75 LLEKADIVVDATPGGVGA--KNKELYE---KAGVKAIFQGG  110 (341)
T ss_pred             hhccCCEEEECCCchhhH--HHHHHHH---HCCCEEEEcCC
Confidence            457899999999866532  4444333   33465555554

>PRK12319 acetyl-CoA carboxylase subunit alpha; Provisional

Probab=95.92  E-value=0.042  Score=50.89  Aligned_cols=96  Identities=11%  Similarity=0.135  Sum_probs=58.2

Q ss_pred             CCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceecCC
Q psy9056           3 AEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEP   82 (359)
Q Consensus         3 a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~~~   82 (359)
                      +-|||.-....||+++|.++  +.|++-      .|.+....++...--...+.++    ..+++.++++.|+||+++|+
T Consensus       147 ~~gGgA~a~~~~D~v~m~~~--a~~~v~------~pe~~a~il~~~~~~a~~aa~~----~~~~a~~l~~~g~iD~ii~e  214 (256)
T PRK12319        147 GGSGGALALAVADQVWMLEN--TMYAVL------SPEGFASILWKDGSRATEAAEL----MKITAGELLEMGVVDKVIPE  214 (256)
T ss_pred             cCcHHHHHhhcCCEEEEecC--ceEEEc------CHHHHHHHHhcCcccHHHHHHH----cCCCHHHHHHCCCCcEecCC
Confidence            44677777789999999988  666542      2333333333322111222333    37799999999999999986


Q ss_pred             CCCCCCCcchhhHHHHHHHHHHHHHHHhcCcc
Q psy9056          83 LGPGLNHPEERTMEYLEEVAVNTASQLASGKL  114 (359)
Q Consensus        83 ~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~  114 (359)
                      .    +..++...+.+.+...+...++...++
T Consensus       215 ~----~~~~~~~~~~~~~~~~~~l~~l~~~~~  242 (256)
T PRK12319        215 H----GYFSSEIIDMIKKNLIEELAQLSQKPL  242 (256)
T ss_pred             C----CCCHHHHHHHHHHHHHHHHHHHHCCCH
Confidence            2    133333445555555555555555554

>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.89  E-value=0.02  Score=53.94  Aligned_cols=91  Identities=18%  Similarity=0.195  Sum_probs=60.6

Q ss_pred             hhhHHHHHhHhhhhhhhhcCCCCCCCCccEEEEECCCc-chHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHH
Q psy9056         193 PQSKGLMGLFRAQTECKKNRLGKPQTPVKTVAVLGAGL-MGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAV  271 (359)
Q Consensus       193 ~~~~~~~~af~~k~~~~~~~~~~~~~~~~kI~IIG~G~-mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~  271 (359)
                      |.+-.|+-..+++...        +-.=++|.|||.|. .|.+++..|.+.|..|+++++....+.              
T Consensus       140 p~T~~gii~~L~~~~i--------~l~Gk~vvViG~gg~vGkpia~~L~~~gatVtv~~~~t~~L~--------------  197 (283)
T PRK14192        140 SATPAGIMRLLKAYNI--------ELAGKHAVVVGRSAILGKPMAMMLLNANATVTICHSRTQNLP--------------  197 (283)
T ss_pred             CCcHHHHHHHHHHcCC--------CCCCCEEEEECCcHHHHHHHHHHHHhCCCEEEEEeCCchhHH--------------
Confidence            4444666666654321        12226899999987 999999999999999999997432211              


Q ss_pred             hhccCChHHHHhhhcccccccCcCCCCCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcC
Q psy9056         272 KRKKMSALDRDRYLASLVGTLSYDPFKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNT  335 (359)
Q Consensus       272 ~~~~~~~~~~~~~~~~i~~~~~~~~l~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~t  335 (359)
                                             +.+.++|+||.|++...     .+.  .+.++++.++++..
T Consensus       198 -----------------------~~~~~aDIvI~AtG~~~-----~v~--~~~lk~gavViDvg  231 (283)
T PRK14192        198 -----------------------ELVKQADIIVGAVGKPE-----LIK--KDWIKQGAVVVDAG  231 (283)
T ss_pred             -----------------------HHhccCCEEEEccCCCC-----cCC--HHHcCCCCEEEEEE
Confidence                                   22578999999995222     122  23467888887543

>PRK14027 quinate/shikimate dehydrogenase; Provisional

Probab=95.79  E-value=0.016  Score=54.68  Aligned_cols=43  Identities=26%  Similarity=0.232  Sum_probs=37.8

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCC-eeEEecCCHHHHHHHHHHH
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGY-NTIVKDSFEKGLARGLGQI  263 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~-~V~l~d~~~~~l~~~~~~~  263 (359)
                      +++.|+|+|-.+.+++..++..|. +|+++||+.++.+...+.+
T Consensus       128 k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~ka~~La~~~  171 (283)
T PRK14027        128 DSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVI  171 (283)
T ss_pred             CeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHH
Confidence            689999999999999999999997 7999999999877765443

>CHL00198 accA acetyl-CoA carboxylase carboxyltransferase alpha subunit; Provisional

Probab=95.79  E-value=0.055  Score=51.52  Aligned_cols=100  Identities=12%  Similarity=0.068  Sum_probs=61.9

Q ss_pred             CCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceecCC
Q psy9056           3 AEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEP   82 (359)
Q Consensus         3 a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~~~   82 (359)
                      +-|||.-....||+++|.++  +.|+.-      .|.++.+.+|..   ..++.+ +-..-++++++.+++|+||+++|.
T Consensus       203 ggsGGAlal~~aD~V~m~e~--a~~sVi------sPEg~a~Il~~d---~~~a~~-aA~~~~ita~dL~~~giiD~ii~E  270 (322)
T CHL00198        203 GGSGGALGIGIGDSIMMLEY--AVYTVA------TPEACAAILWKD---SKKSLD-AAEALKITSEDLKVLGIIDEIIPE  270 (322)
T ss_pred             ccHHHHHhhhcCCeEEEeCC--eEEEec------CHHHHHHHHhcc---hhhHHH-HHHHcCCCHHHHHhCCCCeEeccC
Confidence            34556555556999999988  777653      355555554443   233333 223568999999999999999986


Q ss_pred             CCCCCCCcchhhHHHHHHHHHHHHHHHhcCcc
Q psy9056          83 LGPGLNHPEERTMEYLEEVAVNTASQLASGKL  114 (359)
Q Consensus        83 ~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~  114 (359)
                      ...+-.+.++.....+.....+...++...++
T Consensus       271 p~ggah~~~~~~~~~l~~~~~~~l~~l~~~~~  302 (322)
T CHL00198        271 PIGGAQADPASASKILKKKLIRQLDFLKILSP  302 (322)
T ss_pred             CCCccccCHHHHHHHHHHHHHHHHHHHHCCCH
Confidence            32222334444445555555555556665554

>PRK14514 ATP-dependent Clp protease proteolytic subunit; Provisional

Probab=95.77  E-value=0.03  Score=50.67  Aligned_cols=80  Identities=14%  Similarity=0.131  Sum_probs=53.7

Q ss_pred             CCCCchHHHHHHhcCE--EEEecCCceEEeccccCCCCCCCcchH---------------hHHhhhcCh--HHHHHHHhc
Q psy9056           1 MFAEPSLATVALACHY--RIVVKDKKTGLGLPEVMLGLLPGAGGT---------------QRLPKLTAL--PNVLDMTLT   61 (359)
Q Consensus         1 ~~a~GgG~~lalacD~--ria~~~~~~~~~~pe~~~Gi~p~~g~~---------------~~l~~~~g~--~~a~~~~lt   61 (359)
                      |.|.+.|..|++++|.  |++.++  ++|-+-...-|......-.               ..+....|.  ....+++-.
T Consensus       121 G~AAS~AslIl~aG~~gkR~~~pn--a~iMiHqP~~~~~G~a~di~i~a~el~~~~~~i~~iya~~TG~~~e~I~~~~~r  198 (221)
T PRK14514        121 GMAASMASVLLVAGTKGKRSALPH--SRVMIHQPLGGAQGQASDIEITAREIQKLKKELYTIIADHSGTPFDKVWADSDR  198 (221)
T ss_pred             EEehhHHHHHHhcCCCCceeeCCC--CEEEeccCCcccCCCcchHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhhc
Confidence            5678889999999996  888877  8877777654432111100               012222332  344455566


Q ss_pred             CCCCCHHHHHHcCCcceecCC
Q psy9056          62 GKTLKADKAKKMGIVDQLVEP   82 (359)
Q Consensus        62 g~~~~a~eA~~~Glv~~~~~~   82 (359)
                      ...++|+||+++||+|++++.
T Consensus       199 d~wmtA~EA~eyGliD~Vi~~  219 (221)
T PRK14514        199 DYWMTAQEAKEYGMIDEVLIK  219 (221)
T ss_pred             CccCCHHHHHHcCCccEEeec
Confidence            677999999999999999874

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.75  E-value=0.11  Score=52.70  Aligned_cols=37  Identities=24%  Similarity=0.234  Sum_probs=32.8

Q ss_pred             CCccEEEEECCCcchHHHHHHHHHCCCeeEEecCCHH
Q psy9056         218 TPVKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEK  254 (359)
Q Consensus       218 ~~~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~  254 (359)
                      ..-++|.|||+|..|.++|..|.+.|++|+++|.++.
T Consensus        14 ~~~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~   50 (480)
T PRK01438         14 WQGLRVVVAGLGVSGFAAADALLELGARVTVVDDGDD   50 (480)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCch
Confidence            3446899999999999999999999999999997653

>cd07017 S14_ClpP_2 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease

Probab=95.74  E-value=0.0089  Score=52.01  Aligned_cols=77  Identities=19%  Similarity=0.173  Sum_probs=54.0

Q ss_pred             CCCCchHHHHHHhcC--EEEEecCCceEEeccccCCCCCCCcc---------------hHhHHhhhcCh--HHHHHHHhc
Q psy9056           1 MFAEPSLATVALACH--YRIVVKDKKTGLGLPEVMLGLLPGAG---------------GTQRLPKLTAL--PNVLDMTLT   61 (359)
Q Consensus         1 ~~a~GgG~~lalacD--~ria~~~~~~~~~~pe~~~Gi~p~~g---------------~~~~l~~~~g~--~~a~~~~lt   61 (359)
                      |.|.++|.-+++++|  .|++.++  +.|.+-+...+..-...               ....+....|.  ....+++-.
T Consensus        76 g~aaS~~~~i~~~g~~~~r~~~~~--a~~~~h~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~tg~~~~~i~~~~~~  153 (171)
T cd07017          76 GLAASMGALLLAAGTKGKRYALPN--SRIMIHQPLGGAGGQASDIEIQAKEILRLRRRLNEILAKHTGQPLEKIEKDTDR  153 (171)
T ss_pred             eEehhHHHHHHHcCCCCCEEEccc--hHHHHcCCCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhC
Confidence            457888999999999  8999988  99988887665433210               01112222232  344566667


Q ss_pred             CCCCCHHHHHHcCCccee
Q psy9056          62 GKTLKADKAKKMGIVDQL   79 (359)
Q Consensus        62 g~~~~a~eA~~~Glv~~~   79 (359)
                      +..++++||+++||+|++
T Consensus       154 ~~~lta~EA~e~GiiD~V  171 (171)
T cd07017         154 DRYMSAEEAKEYGLIDKI  171 (171)
T ss_pred             CccccHHHHHHcCCCccC
Confidence            788999999999999975

Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activ

>PRK12548 shikimate 5-dehydrogenase; Provisional

Probab=95.73  E-value=0.017  Score=54.54  Aligned_cols=39  Identities=18%  Similarity=0.202  Sum_probs=33.6

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCCe-eEEecCCH---HHHHHH
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGYN-TIVKDSFE---KGLARG  259 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~~-V~l~d~~~---~~l~~~  259 (359)
                      +++.|+|+|-.|.+++..++..|.. |++++|++   +++++.
T Consensus       127 k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~~~~~~a~~l  169 (289)
T PRK12548        127 KKLTVIGAGGAATAIQVQCALDGAKEITIFNIKDDFYERAEQT  169 (289)
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCchHHHHHHHH
Confidence            6899999999999999999999986 99999997   444443

>PRK12829 short chain dehydrogenase; Provisional

Probab=95.71  E-value=0.076  Score=48.60  Aligned_cols=40  Identities=30%  Similarity=0.272  Sum_probs=35.6

Q ss_pred             cEEEEECC-CcchHHHHHHHHHCCCeeEEecCCHHHHHHHH
Q psy9056         221 KTVAVLGA-GLMGAGIAHVTVDKGYNTIVKDSFEKGLARGL  260 (359)
Q Consensus       221 ~kI~IIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~  260 (359)
                      ++|.|.|+ |.+|..++..|+++|++|++.+++++..+...
T Consensus        12 ~~vlItGa~g~iG~~~a~~L~~~g~~V~~~~r~~~~~~~~~   52 (264)
T PRK12829         12 LRVLVTGGASGIGRAIAEAFAEAGARVHVCDVSEAALAATA   52 (264)
T ss_pred             CEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence            78999997 99999999999999999999999987666543

>COG4091 Predicted homoserine dehydrogenase [Amino acid transport and metabolism]

Probab=95.71  E-value=0.064  Score=51.25  Aligned_cols=88  Identities=20%  Similarity=0.196  Sum_probs=51.9

Q ss_pred             cEEEEECCCcchHHHHHHHHH-CCCeeEE-ecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcCC--
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVD-KGYNTIV-KDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDP--  296 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~-~G~~V~l-~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--  296 (359)
                      -|||+||+|.||+.|+..... .|.+|.. -|++.+...++.+....--....+....+.-......+.+.+|+|.+.  
T Consensus        18 iRVGlIGAG~mG~~ivtQi~~m~Gm~vvaisd~~~~~ak~A~~~ag~~~~~~~e~~~~s~~a~Ai~aGKi~vT~D~~~i~   97 (438)
T COG4091          18 IRVGLIGAGEMGTGIVTQIASMPGMEVVAISDRNLDAAKRAYDRAGGPKIEAVEADDASKMADAIEAGKIAVTDDAELII   97 (438)
T ss_pred             eEEEEecccccchHHHHHHhhcCCceEEEEecccchHHHHHHHHhcCCcccccccchhhHHHHHHhcCcEEEecchhhhh
Confidence            499999999999999876654 5887654 488888777665532110000111111111111122345667777754  


Q ss_pred             -CCCccEEEEccc
Q psy9056         297 -FKNADMVIEAVF  308 (359)
Q Consensus       297 -l~~aD~Vi~avp  308 (359)
                       ....|+||+++-
T Consensus        98 ~~~~IdvIIdATG  110 (438)
T COG4091          98 ANDLIDVIIDATG  110 (438)
T ss_pred             cCCcceEEEEcCC
Confidence             355789999884

>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase

Probab=95.68  E-value=0.017  Score=56.84  Aligned_cols=99  Identities=17%  Similarity=0.242  Sum_probs=60.0

Q ss_pred             CccEEEEECC-CcchHHHHHHHHHC-CCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc--
Q psy9056         219 PVKTVAVLGA-GLMGAGIAHVTVDK-GYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY--  294 (359)
Q Consensus       219 ~~~kI~IIG~-G~mG~~iA~~l~~~-G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~--  294 (359)
                      ..+||+|+|+ |+.|..+...|.++ +++|..+..+...-+....    .... ...+            ......+.  
T Consensus        37 ~~~kVaIvGATG~vG~eLlrlL~~hP~~el~~l~s~~saG~~i~~----~~~~-l~~~------------~~~~~~~~~~   99 (381)
T PLN02968         37 EKKRIFVLGASGYTGAEVRRLLANHPDFEITVMTADRKAGQSFGS----VFPH-LITQ------------DLPNLVAVKD   99 (381)
T ss_pred             cccEEEEECCCChHHHHHHHHHHhCCCCeEEEEEChhhcCCCchh----hCcc-ccCc------------cccceecCCH
Confidence            3459999998 99999999999998 6799988765432111110    0000 0000            01001112  


Q ss_pred             CCCCCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCcH
Q psy9056         295 DPFKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPI  340 (359)
Q Consensus       295 ~~l~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~  340 (359)
                      +.++++|+||.|+|...  -..+...+    ..++.|+++++....
T Consensus       100 ~~~~~~DvVf~Alp~~~--s~~i~~~~----~~g~~VIDlSs~fRl  139 (381)
T PLN02968        100 ADFSDVDAVFCCLPHGT--TQEIIKAL----PKDLKIVDLSADFRL  139 (381)
T ss_pred             HHhcCCCEEEEcCCHHH--HHHHHHHH----hCCCEEEEcCchhcc
Confidence            23578999999998654  33555554    346888888875443

>cd07018 S49_SppA_67K_type Signal peptide peptidase A (SppA) 67K type, a serine protease, has catalytic Ser-Lys dyad

Probab=95.64  E-value=0.029  Score=50.87  Aligned_cols=28  Identities=11%  Similarity=-0.033  Sum_probs=24.5

Q ss_pred             CCchHHHHHHhcCEEEEecCCceEEecccc
Q psy9056           3 AEPSLATVALACHYRIVVKDKKTGLGLPEV   32 (359)
Q Consensus         3 a~GgG~~lalacD~ria~~~~~~~~~~pe~   32 (359)
                      |.+||..|+++||.++|.+.  +.|+..-+
T Consensus        88 ~~sggy~lasaad~I~a~p~--~~vg~iGv  115 (222)
T cd07018          88 YSQGQYYLASAADEIYLNPS--GSVELTGL  115 (222)
T ss_pred             CCchhhhhhhhCCEEEECCC--ceEEeecc
Confidence            67899999999999999987  98888544

Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 67K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily contain an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown that members in this subfamily, mostly bacterial, are serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys

>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins

Probab=95.63  E-value=0.047  Score=45.72  Aligned_cols=32  Identities=25%  Similarity=0.271  Sum_probs=29.6

Q ss_pred             EEEEECCCcchHHHHHHHHHCCC-eeEEecCCH
Q psy9056         222 TVAVLGAGLMGAGIAHVTVDKGY-NTIVKDSFE  253 (359)
Q Consensus       222 kI~IIG~G~mG~~iA~~l~~~G~-~V~l~d~~~  253 (359)
                      +|.|||+|.+|+.++..|++.|. +++++|.+.
T Consensus         1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~   33 (143)
T cd01483           1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDT   33 (143)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCC
Confidence            58999999999999999999998 799999774

This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.

>PLN03230 acetyl-coenzyme A carboxylase carboxyl transferase; Provisional

Probab=95.60  E-value=0.077  Score=52.04  Aligned_cols=98  Identities=15%  Similarity=0.148  Sum_probs=59.0

Q ss_pred             chHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceecCCCC
Q psy9056           5 PSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLG   84 (359)
Q Consensus         5 GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~~~~~   84 (359)
                      +||......||+++|.++  +.+++-      .|.++.+.+|....-...+.+    .-.+++.+++++|+||+++|...
T Consensus       272 SGGAlalg~aD~VlMle~--A~ysVi------sPEgaAsILwkd~~~A~eAAe----alkitA~dL~~~GiID~II~Ep~  339 (431)
T PLN03230        272 SGGALAIGCGNRMLMMEN--AVYYVA------SPEACAAILWKSAAAAPKAAE----ALRITAAELVKLGVVDEIVPEPL  339 (431)
T ss_pred             cHHHHHhhcCCEEEEecC--CEEEec------CHHHHHHHHhccccchHHHHH----HcCCCHHHHHhCCCCeEeccCCC
Confidence            344444446899999988  665542      355555555543322233333    34899999999999999998632


Q ss_pred             CCCCCcchhhHHHHHHHHHHHHHHHhcCcc
Q psy9056          85 PGLNHPEERTMEYLEEVAVNTASQLASGKL  114 (359)
Q Consensus        85 ~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~  114 (359)
                      .+-.+.++.....+.....+...+|...++
T Consensus       340 ggAh~d~~~~~~~l~~~i~~~l~~L~~~~~  369 (431)
T PLN03230        340 GGAHSDPLQASKNIKEVILRHMKELMKMDP  369 (431)
T ss_pred             CCcccCHHHHHHHHHHHHHHHHHHHHCCCH
Confidence            222233444445555555555566665554

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=95.59  E-value=0.032  Score=49.99  Aligned_cols=34  Identities=21%  Similarity=0.205  Sum_probs=31.5

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCCeeEEecCCHH
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEK  254 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~  254 (359)
                      ++|.|||+|.+|..-+..|.+.|.+|++++.+..
T Consensus        10 k~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~~   43 (205)
T TIGR01470        10 RAVLVVGGGDVALRKARLLLKAGAQLRVIAEELE   43 (205)
T ss_pred             CeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCCC
Confidence            6999999999999999999999999999987653

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>PRK07236 hypothetical protein; Provisional

Probab=95.53  E-value=0.015  Score=56.99  Aligned_cols=39  Identities=18%  Similarity=0.152  Sum_probs=35.3

Q ss_pred             CCCCccEEEEECCCcchHHHHHHHHHCCCeeEEecCCHH
Q psy9056         216 PQTPVKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEK  254 (359)
Q Consensus       216 ~~~~~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~  254 (359)
                      ++|...+|.|||+|..|.++|..|+++|++|+++|+++.
T Consensus         2 ~~~~~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~   40 (386)
T PRK07236          2 THMSGPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPT   40 (386)
T ss_pred             CCCCCCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence            346678999999999999999999999999999998864

>PLN00135 malate dehydrogenase

Probab=95.50  E-value=0.072  Score=50.84  Aligned_cols=100  Identities=13%  Similarity=0.077  Sum_probs=65.8

Q ss_pred             CCeeEEecCCH--HHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccC-cCCCCCccEEEEcccC----------
Q psy9056         243 GYNTIVKDSFE--KGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLS-YDPFKNADMVIEAVFE----------  309 (359)
Q Consensus       243 G~~V~l~d~~~--~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~l~~aD~Vi~avp~----------  309 (359)
                      ...++|+|+++  +.++.....+.+.....              ...+..+++ ++++++||+||++.-.          
T Consensus        13 ~~~l~L~D~~~~~~~a~g~~~Dl~da~~~~--------------~~~i~~~~~~y~~~~daDiVVitAG~~~k~g~sR~d   78 (309)
T PLN00135         13 PVILHMLDIPPAAEALNGVKMELIDAAFPL--------------LKGVVATTDVVEACKGVNIAVMVGGFPRKEGMERKD   78 (309)
T ss_pred             eEEEEEecCcccccchhhHHHHHHhhhHHh--------------cCCcEecCCHHHHhCCCCEEEEeCCCCCCCCCcHHH
Confidence            35789999998  87766555555433211              113444455 7999999999987622          


Q ss_pred             ----CHHHHHHHHHHHHHhCCCCcEEEEcCCCCc--HHHHHhhcCC-CCcEEee
Q psy9056         310 ----DINIKHQVIKEIEAVVPPHCVVATNTSAIP--ITKIAAASKR-PDKVRNM  356 (359)
Q Consensus       310 ----~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~--~~~l~~~~~~-~~rvig~  356 (359)
                          +..+.+++.++|.+++.++.+++..++...  ...+.+.++. +.|+||+
T Consensus        79 ll~~N~~I~~~i~~~i~~~~~p~aivivvsNPvDv~t~~~~~~sg~~~~~vig~  132 (309)
T PLN00135         79 VMSKNVSIYKSQASALEKHAAPDCKVLVVANPANTNALILKEFAPSIPEKNITC  132 (309)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCeEEEEeCCcHHHHHHHHHHHcCCCCccEEEe
Confidence                445677788889997667787766665544  3456666664 4688874

>PRK12550 shikimate 5-dehydrogenase; Reviewed

Probab=95.48  E-value=0.043  Score=51.45  Aligned_cols=40  Identities=25%  Similarity=0.240  Sum_probs=35.7

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCC-eeEEecCCHHHHHHHH
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGY-NTIVKDSFEKGLARGL  260 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~-~V~l~d~~~~~l~~~~  260 (359)
                      +++.|+|+|-.+.+++..+.+.|. +|++++|++++.+...
T Consensus       123 ~~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~~a~~la  163 (272)
T PRK12550        123 LVVALRGSGGMAKAVAAALRDAGFTDGTIVARNEKTGKALA  163 (272)
T ss_pred             CeEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHH
Confidence            489999999999999999999997 6999999998776644

>PRK14513 ATP-dependent Clp protease proteolytic subunit; Provisional

Probab=95.43  E-value=0.048  Score=48.68  Aligned_cols=78  Identities=18%  Similarity=0.263  Sum_probs=54.3

Q ss_pred             CCCCchHHHHHHhcCE--EEEecCCceEEeccccCCCCCCCcchHh-----------------HHhhhcCh--HHHHHHH
Q psy9056           1 MFAEPSLATVALACHY--RIVVKDKKTGLGLPEVMLGLLPGAGGTQ-----------------RLPKLTAL--PNVLDMT   59 (359)
Q Consensus         1 ~~a~GgG~~lalacD~--ria~~~~~~~~~~pe~~~Gi~p~~g~~~-----------------~l~~~~g~--~~a~~~~   59 (359)
                      |.|.+.|+.|++++|-  |++.++  +++-+-....|+. + -...                 .+.+..|.  ....+++
T Consensus        94 G~AaS~As~il~aG~kgkR~~~pn--a~iMIHqp~~~~~-G-~a~di~~~a~el~~~~~~l~~iya~~Tg~~~~~I~~~~  169 (201)
T PRK14513         94 GIAMSMGSVLLMAGDKGKRMALPN--SRIMIHQGSAGFR-G-NTPDLEVQAKEVLFLRDTLVDIYHRHTDLPHEKLLRDM  169 (201)
T ss_pred             eeehhhHHHHHhcCCCCcEEecCC--eEEEEecCCCCCC-C-CHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHh
Confidence            5678889999999995  999988  8888888765541 1 1111                 11223332  3344555


Q ss_pred             hcCCCCCHHHHHHcCCcceecCC
Q psy9056          60 LTGKTLKADKAKKMGIVDQLVEP   82 (359)
Q Consensus        60 ltg~~~~a~eA~~~Glv~~~~~~   82 (359)
                      -....++|+||+++||+|+++++
T Consensus       170 ~rd~~msa~EA~eyGliD~I~~~  192 (201)
T PRK14513        170 ERDYFMSPEEAKAYGLIDSVIEP  192 (201)
T ss_pred             ccCcccCHHHHHHcCCCcEEecc
Confidence            55667999999999999999975

>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form

Probab=95.41  E-value=0.034  Score=53.94  Aligned_cols=100  Identities=16%  Similarity=0.166  Sum_probs=58.6

Q ss_pred             cEEEEECC-CcchHHHHHHHHHC-CCeeE-EecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccc-cCcC-
Q psy9056         221 KTVAVLGA-GLMGAGIAHVTVDK-GYNTI-VKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGT-LSYD-  295 (359)
Q Consensus       221 ~kI~IIG~-G~mG~~iA~~l~~~-G~~V~-l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~-~~~~-  295 (359)
                      .||+|+|+ |++|..+...+.++ +++++ +++.+...-+....    ..      +.+..     . ..+.+. .+.+ 
T Consensus         1 ~kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~sagk~~~~----~~------~~l~~-----~-~~~~~~~~~~~~   64 (346)
T TIGR01850         1 IKVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRESAGKPVSE----VH------PHLRG-----L-VDLNLEPIDEEE   64 (346)
T ss_pred             CEEEEECCCCHHHHHHHHHHHcCCCceEEEEeccchhcCCChHH----hC------ccccc-----c-CCceeecCCHHH
Confidence            38999998 99999999999977 56777 55655422111110    00      00000     0 001111 1222 


Q ss_pred             CCCCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCcHH
Q psy9056         296 PFKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPIT  341 (359)
Q Consensus       296 ~l~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~  341 (359)
                      .+.++|+||.|+|....  .++...+.+   .++.|+++++.....
T Consensus        65 ~~~~~DvVf~alP~~~s--~~~~~~~~~---~G~~VIDlS~~fR~~  105 (346)
T TIGR01850        65 IAEDADVVFLALPHGVS--AELAPELLA---AGVKVIDLSADFRLK  105 (346)
T ss_pred             hhcCCCEEEECCCchHH--HHHHHHHHh---CCCEEEeCChhhhcC
Confidence            23589999999997763  355555443   578888888865543

This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.

>PRK06153 hypothetical protein; Provisional

Probab=95.38  E-value=0.029  Score=54.71  Aligned_cols=32  Identities=19%  Similarity=0.248  Sum_probs=30.0

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCC-eeEEecCC
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGY-NTIVKDSF  252 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~-~V~l~d~~  252 (359)
                      .+|+|||+|-.|+.++..|++.|. +++++|.+
T Consensus       177 ~~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~D  209 (393)
T PRK06153        177 QRIAIIGLGGTGSYILDLVAKTPVREIHLFDGD  209 (393)
T ss_pred             CcEEEEcCCccHHHHHHHHHHcCCCEEEEECCC
Confidence            689999999999999999999998 89999877

>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]

Probab=95.34  E-value=0.22  Score=46.32  Aligned_cols=48  Identities=27%  Similarity=0.318  Sum_probs=43.0

Q ss_pred             CCCccEEEEECC-CcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHH
Q psy9056         217 QTPVKTVAVLGA-GLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIK  264 (359)
Q Consensus       217 ~~~~~kI~IIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~  264 (359)
                      ++..+++.|-|+ +-+|..+|..|+++|++|+++.|+.+++++..+.++
T Consensus         3 ~~~~~~~lITGASsGIG~~~A~~lA~~g~~liLvaR~~~kL~~la~~l~   51 (265)
T COG0300           3 PMKGKTALITGASSGIGAELAKQLARRGYNLILVARREDKLEALAKELE   51 (265)
T ss_pred             CCCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHH
Confidence            356788999997 999999999999999999999999999998877665

>PRK05868 hypothetical protein; Validated

Probab=95.30  E-value=0.016  Score=56.70  Aligned_cols=36  Identities=28%  Similarity=0.314  Sum_probs=33.5

Q ss_pred             ccEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHH
Q psy9056         220 VKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKG  255 (359)
Q Consensus       220 ~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~  255 (359)
                      |++|.|||+|..|.+.|..|+++|++|+++|++++.
T Consensus         1 ~~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~~   36 (372)
T PRK05868          1 MKTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPGL   36 (372)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Confidence            679999999999999999999999999999988754

>KOG1683|consensus

Probab=95.26  E-value=0.027  Score=54.06  Aligned_cols=166  Identities=16%  Similarity=0.128  Sum_probs=108.0

Q ss_pred             HHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceecCC-CCC
Q psy9056           7 LATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEP-LGP   85 (359)
Q Consensus         7 G~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~~~-~~~   85 (359)
                      .|.++-+|+||+...-+....+..+...++.-+..-...+...+|...+-.-+--+.-++..||++.|+++++.|. .  
T Consensus       165 ~vvVg~c~gf~v~r~l~~y~~~~~~~l~e~g~~p~~iD~~~t~fGf~~g~~~L~d~~gfdv~eal~~gl~~~~~~r~~--  242 (380)
T KOG1683|consen  165 PVVVGNCCGFRVNRLLPPYTIGLNELLLEIGADPWLIDSLITKFGFRVGERALADGVGFDVAEALAVGLGDEIGPRIE--  242 (380)
T ss_pred             cEEeccCCceEEEecccHHHHHHHHHHHHcCCCHHHHHHHHHhcCccccHHHHhhccCccHHHHHhhccchhccchhH--
Confidence            3788999999999954325558889999966665666666667787777777778899999999999999999983 2  


Q ss_pred             CCCCcchhhHHHHHHHHHHHHHHHhcCcccccc-CCCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHhhCCCCCcHHHHH
Q psy9056          86 GLNHPEERTMEYLEEVAVNTASQLASGKLKINR-TKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAPLKIL  164 (359)
Q Consensus        86 ~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~-~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (359)
                                +++.+.............+-... +|..-                  ..+                  +.
T Consensus       243 ----------eel~~~~~~g~kT~kg~y~y~~~l~k~~~------------------~~~------------------~~  276 (380)
T KOG1683|consen  243 ----------EELLEKGRAGIKTGKGIYPYARGLTKKMK------------------RDE------------------ME  276 (380)
T ss_pred             ----------HHHHHHHhhhhhccCcccccccccccCCC------------------hhh------------------HH
Confidence                      77777777766666555443222 22211                  011                  11


Q ss_pred             HHHHHhh-ccChhhHHHHHHHHhhhhhcChhhHHHHHhHhhhhhhhhcCCCCCCCCccEEEEECCCc
Q psy9056         165 DVVRTGI-EKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQTECKKNRLGKPQTPVKTVAVLGAGL  230 (359)
Q Consensus       165 ~~~~~~~-~~~~~~~~~~e~~~~~~~~~s~~~~~~~~af~~k~~~~~~~~~~~~~~~~kI~IIG~G~  230 (359)
                      +.+++-. ....+..   ..+-+...+.+|-..|+++.+.|.-..+.       .++.-..|.|.|-
T Consensus       277 ~~~r~l~~~~~~r~~---~~ed~v~~~~~p~VnEal~~l~EGi~~~~-------~~~Di~~v~G~gf  333 (380)
T KOG1683|consen  277 ALLRRLSLTPNPRVA---DDEDFVEFLLSPFVNEALRCLLEGLKASP-------SDGDIASVFGLGF  333 (380)
T ss_pred             HHHHHhccCCCcccC---CHHHHHHHHhhHHHHHHHHHHHHHHhcCc-------cccceeeeeccCC
Confidence            1122211 0111111   23344566889999999999999887555       4445566777653

>PRK08300 acetaldehyde dehydrogenase; Validated

Probab=95.26  E-value=0.081  Score=50.17  Aligned_cols=89  Identities=12%  Similarity=0.125  Sum_probs=52.8

Q ss_pred             cEEEEECCCcchHHHHHHHHHC-CCee-EEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhccccc-ccCcC--
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDK-GYNT-IVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVG-TLSYD--  295 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~-G~~V-~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~-~~~~~--  295 (359)
                      -||+|||+|.+|..+...+.+. +.++ .++|++++.......         .+.|             +.. .++++  
T Consensus         5 lrVAIIGtG~IGt~hm~~l~~~~~velvAVvdid~es~gla~A---------~~~G-------------i~~~~~~ie~L   62 (302)
T PRK08300          5 LKVAIIGSGNIGTDLMIKILRSEHLEPGAMVGIDPESDGLARA---------RRLG-------------VATSAEGIDGL   62 (302)
T ss_pred             CeEEEEcCcHHHHHHHHHHhcCCCcEEEEEEeCChhhHHHHHH---------HHcC-------------CCcccCCHHHH
Confidence            5899999999999988777764 4565 467888764211110         0111             111 12221  


Q ss_pred             ----CCCCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCC
Q psy9056         296 ----PFKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTS  336 (359)
Q Consensus       296 ----~l~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts  336 (359)
                          ...+.|+|++++|....  .......   ...++.++++++
T Consensus        63 L~~~~~~dIDiVf~AT~a~~H--~e~a~~a---~eaGk~VID~sP  102 (302)
T PRK08300         63 LAMPEFDDIDIVFDATSAGAH--VRHAAKL---REAGIRAIDLTP  102 (302)
T ss_pred             HhCcCCCCCCEEEECCCHHHH--HHHHHHH---HHcCCeEEECCc
Confidence                23678999999986553  2433333   345677776665

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=95.26  E-value=0.079  Score=50.96  Aligned_cols=41  Identities=29%  Similarity=0.251  Sum_probs=33.1

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHH
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLG  261 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~  261 (359)
                      ++|+|+|+|-+|..-.+.+...|.+|+.+|+++++++.+++
T Consensus       168 ~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~  208 (339)
T COG1064         168 KWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKK  208 (339)
T ss_pred             CEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHH
Confidence            79999999977755555555589999999999999887653

>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.23  E-value=0.046  Score=51.38  Aligned_cols=91  Identities=21%  Similarity=0.182  Sum_probs=64.4

Q ss_pred             hhhHHHHHhHhhhhhhhhcCCCCCCCCccEEEEECCCc-chHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHH
Q psy9056         193 PQSKGLMGLFRAQTECKKNRLGKPQTPVKTVAVLGAGL-MGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAV  271 (359)
Q Consensus       193 ~~~~~~~~af~~k~~~~~~~~~~~~~~~~kI~IIG~G~-mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~  271 (359)
                      |-+..++-.+++...-.        -.=++|.|||-|. +|.+++..|.+.|..|++++..-..++              
T Consensus       140 PcTp~av~~ll~~~~i~--------l~Gk~vvViGrs~iVG~Pla~lL~~~~atVtv~hs~T~~l~--------------  197 (285)
T PRK10792        140 PCTPRGIMTLLERYGID--------TYGLNAVVVGASNIVGRPMSLELLLAGCTVTVCHRFTKNLR--------------  197 (285)
T ss_pred             CCCHHHHHHHHHHcCCC--------CCCCEEEEECCCcccHHHHHHHHHHCCCeEEEEECCCCCHH--------------
Confidence            55667777777665421        1227999999877 999999999999999999975422111              


Q ss_pred             hhccCChHHHHhhhcccccccCcCCCCCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcC
Q psy9056         272 KRKKMSALDRDRYLASLVGTLSYDPFKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNT  335 (359)
Q Consensus       272 ~~~~~~~~~~~~~~~~i~~~~~~~~l~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~t  335 (359)
                                             +.++.+|+||.++.-..-     +.  .++++++++|++..
T Consensus       198 -----------------------~~~~~ADIvi~avG~p~~-----v~--~~~vk~gavVIDvG  231 (285)
T PRK10792        198 -----------------------HHVRNADLLVVAVGKPGF-----IP--GEWIKPGAIVIDVG  231 (285)
T ss_pred             -----------------------HHHhhCCEEEEcCCCccc-----cc--HHHcCCCcEEEEcc
Confidence                                   247899999999942221     22  25678999988765

>PRK12828 short chain dehydrogenase; Provisional

Probab=95.22  E-value=0.045  Score=49.13  Aligned_cols=40  Identities=25%  Similarity=0.292  Sum_probs=35.0

Q ss_pred             cEEEEECC-CcchHHHHHHHHHCCCeeEEecCCHHHHHHHH
Q psy9056         221 KTVAVLGA-GLMGAGIAHVTVDKGYNTIVKDSFEKGLARGL  260 (359)
Q Consensus       221 ~kI~IIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~  260 (359)
                      ++|.|.|+ |.+|..++..+++.|++|++.+++++...+..
T Consensus         8 k~vlItGatg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~   48 (239)
T PRK12828          8 KVVAITGGFGGLGRATAAWLAARGARVALIGRGAAPLSQTL   48 (239)
T ss_pred             CEEEEECCCCcHhHHHHHHHHHCCCeEEEEeCChHhHHHHH
Confidence            68999996 99999999999999999999999987655443

>TIGR00513 accA acetyl-CoA carboxylase, carboxyl transferase, alpha subunit

Probab=95.22  E-value=0.12  Score=49.34  Aligned_cols=99  Identities=12%  Similarity=0.056  Sum_probs=56.5

Q ss_pred             CchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceecCCC
Q psy9056           4 EPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPL   83 (359)
Q Consensus         4 ~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~~~~   83 (359)
                      -|||.-....||+++|.++  +.++.       .++-|....+.+-  ..++.+..- ...+++.++++.|+||+++|+.
T Consensus       201 gsGGAla~~~aD~v~m~~~--a~~sV-------isPEg~a~Il~kd--~~~a~~aae-~~~~ta~~l~~~G~iD~II~ep  268 (316)
T TIGR00513       201 GSGGALAIGVGDKVNMLEY--STYSV-------ISPEGCAAILWKD--ASKAPKAAE-AMKITAPDLKELGLIDSIIPEP  268 (316)
T ss_pred             ccHHHhhhccCCEEEEecC--ceEEe-------cCHHHHHHHhccc--hhhHHHHHH-HccCCHHHHHHCCCCeEeccCC
Confidence            3455544446999999987  65554       3333434333322  122222211 3567899999999999999863


Q ss_pred             CCCCCCcchhhHHHHHHHHHHHHHHHhcCcc
Q psy9056          84 GPGLNHPEERTMEYLEEVAVNTASQLASGKL  114 (359)
Q Consensus        84 ~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~  114 (359)
                      ..+--..++.....+.....+...++...++
T Consensus       269 ~~ga~~~~~~~~~~~~~~~~~~l~~l~~~~~  299 (316)
T TIGR00513       269 LGGAHRNPLAAAASLKEQLLADLATLDQLST  299 (316)
T ss_pred             CCccccCHHHHHHHHHHHHHHHHHHHHCCCH
Confidence            2222233334445555555555556665554

The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the alpha chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.

>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G

Probab=95.21  E-value=0.02  Score=41.74  Aligned_cols=30  Identities=27%  Similarity=0.504  Sum_probs=27.4

Q ss_pred             EECCCcchHHHHHHHHHCCCeeEEecCCHH
Q psy9056         225 VLGAGLMGAGIAHVTVDKGYNTIVKDSFEK  254 (359)
Q Consensus       225 IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~  254 (359)
                      |||+|.-|.+.|..|.++|++|.++|+++.
T Consensus         1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~   30 (68)
T PF13450_consen    1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDR   30 (68)
T ss_dssp             EES-SHHHHHHHHHHHHTTSEEEEEESSSS
T ss_pred             CEeeCHHHHHHHHHHHHCCCcEEEEecCcc
Confidence            899999999999999999999999998864

...

>PRK12749 quinate/shikimate dehydrogenase; Reviewed

Probab=95.20  E-value=0.066  Score=50.59  Aligned_cols=34  Identities=24%  Similarity=0.294  Sum_probs=31.1

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCC-eeEEecCCHH
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGY-NTIVKDSFEK  254 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~-~V~l~d~~~~  254 (359)
                      +++.|+|+|-.+.+++..++..|. +|++++|+++
T Consensus       125 k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt~~  159 (288)
T PRK12749        125 KTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDE  159 (288)
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCcc
Confidence            689999999999999999999997 8999999964

>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase

Probab=95.19  E-value=0.049  Score=48.16  Aligned_cols=116  Identities=13%  Similarity=0.088  Sum_probs=70.1

Q ss_pred             hhhHHHHHhHhhhhhh--hhcCCCCCCCCccEEEEECC-CcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHH
Q psy9056         193 PQSKGLMGLFRAQTEC--KKNRLGKPQTPVKTVAVLGA-GLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDG  269 (359)
Q Consensus       193 ~~~~~~~~af~~k~~~--~~~~~~~~~~~~~kI~IIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~  269 (359)
                      |-+..++-.+++....  +..+.+. +..=++|.|||- ..+|.++|..|.+.|..|+++|.+.-..-            
T Consensus        34 PCTp~avi~lL~~~~i~~~~~~~~~-~l~GK~vvVIGrS~iVGkPla~lL~~~~AtVti~~~~~~~~~------------  100 (197)
T cd01079          34 PCTPLAIVKILEFLGIYNKILPYGN-RLYGKTITIINRSEVVGRPLAALLANDGARVYSVDINGIQVF------------  100 (197)
T ss_pred             CCCHHHHHHHHHHhCCcccccccCC-CCCCCEEEEECCCccchHHHHHHHHHCCCEEEEEecCccccc------------
Confidence            4455666666665532  1112211 133379999995 88999999999999999999986542110            


Q ss_pred             HHhhccCChHHHHhhhcccccc--cC----c-CCCCCccEEEEcccCCHH-HHHHHHHHHHHhCCCCcEEEEcCCCCc
Q psy9056         270 AVKRKKMSALDRDRYLASLVGT--LS----Y-DPFKNADMVIEAVFEDIN-IKHQVIKEIEAVVPPHCVVATNTSAIP  339 (359)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~i~~~--~~----~-~~l~~aD~Vi~avp~~~~-~k~~v~~~l~~~~~~~~ii~s~ts~~~  339 (359)
                       ...+..          +-+.+  .+    + +.+++||+||.|++...- +.       .+.+++++++++......
T Consensus       101 -~~~~~~----------~hs~t~~~~~~~~l~~~~~~ADIVIsAvG~~~~~i~-------~d~ik~GavVIDVGi~~d  160 (197)
T cd01079         101 -TRGESI----------RHEKHHVTDEEAMTLDCLSQSDVVITGVPSPNYKVP-------TELLKDGAICINFASIKN  160 (197)
T ss_pred             -cccccc----------ccccccccchhhHHHHHhhhCCEEEEccCCCCCccC-------HHHcCCCcEEEEcCCCcC
Confidence             000000          00001  11    2 457999999999974442 22       235678999988766543

The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional

>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.16  E-value=0.054  Score=50.89  Aligned_cols=92  Identities=23%  Similarity=0.197  Sum_probs=64.5

Q ss_pred             hhhHHHHHhHhhhhhhhhcCCCCCCCCccEEEEECCC-cchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHH
Q psy9056         193 PQSKGLMGLFRAQTECKKNRLGKPQTPVKTVAVLGAG-LMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAV  271 (359)
Q Consensus       193 ~~~~~~~~af~~k~~~~~~~~~~~~~~~~kI~IIG~G-~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~  271 (359)
                      |-+..++-.+++...-.        -.=++|.|||.| .+|.++|..|.+.|..|++++.....++              
T Consensus       138 PcTp~avi~lL~~~~i~--------l~Gk~vvVvGrs~~VG~Pla~lL~~~gAtVtv~hs~t~~l~--------------  195 (285)
T PRK14191        138 PATPMGVMRLLKHYHIE--------IKGKDVVIIGASNIVGKPLAMLMLNAGASVSVCHILTKDLS--------------  195 (285)
T ss_pred             CCcHHHHHHHHHHhCCC--------CCCCEEEEECCCchhHHHHHHHHHHCCCEEEEEeCCcHHHH--------------
Confidence            56677777777765421        122799999998 9999999999999999999864432211              


Q ss_pred             hhccCChHHHHhhhcccccccCcCCCCCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCC
Q psy9056         272 KRKKMSALDRDRYLASLVGTLSYDPFKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTS  336 (359)
Q Consensus       272 ~~~~~~~~~~~~~~~~i~~~~~~~~l~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts  336 (359)
                                             +.++.||+||.|+....-+.       .++++++++|++...
T Consensus       196 -----------------------~~~~~ADIvV~AvG~p~~i~-------~~~vk~GavVIDvGi  230 (285)
T PRK14191        196 -----------------------FYTQNADIVCVGVGKPDLIK-------ASMVKKGAVVVDIGI  230 (285)
T ss_pred             -----------------------HHHHhCCEEEEecCCCCcCC-------HHHcCCCcEEEEeec
Confidence                                   23688999999996333222       234578888876553

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=94.98  E-value=0.07  Score=42.23  Aligned_cols=33  Identities=27%  Similarity=0.315  Sum_probs=30.8

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCCeeEEecCCH
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFE  253 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~  253 (359)
                      ++|.|||.|.+|..=+..|.+.|.+|+++..+.
T Consensus         8 ~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~   40 (103)
T PF13241_consen    8 KRVLVVGGGPVAARKARLLLEAGAKVTVISPEI   40 (103)
T ss_dssp             -EEEEEEESHHHHHHHHHHCCCTBEEEEEESSE
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEECCch
Confidence            689999999999999999999999999999886

>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF)

Probab=94.96  E-value=0.06  Score=46.29  Aligned_cols=94  Identities=23%  Similarity=0.220  Sum_probs=57.2

Q ss_pred             hhhHHHHHhHhhhhhhhhcCCCCCCCCccEEEEECC-CcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHH
Q psy9056         193 PQSKGLMGLFRAQTECKKNRLGKPQTPVKTVAVLGA-GLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAV  271 (359)
Q Consensus       193 ~~~~~~~~af~~k~~~~~~~~~~~~~~~~kI~IIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~  271 (359)
                      |-+..++-.++++....        -.-++|.|||- +.+|.+++..|.++|..|++.+..-+.++              
T Consensus        17 PcTp~aii~lL~~~~~~--------l~Gk~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~~T~~l~--------------   74 (160)
T PF02882_consen   17 PCTPLAIIELLEYYGID--------LEGKKVVVVGRSNIVGKPLAMLLLNKGATVTICHSKTKNLQ--------------   74 (160)
T ss_dssp             -HHHHHHHHHHHHTT-S--------TTT-EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-TTSSSHH--------------
T ss_pred             CCCHHHHHHHHHhcCCC--------CCCCEEEEECCcCCCChHHHHHHHhCCCeEEeccCCCCccc--------------
Confidence            33455666666554311        23379999997 57999999999999999999986643222              


Q ss_pred             hhccCChHHHHhhhcccccccCcCCCCCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCC
Q psy9056         272 KRKKMSALDRDRYLASLVGTLSYDPFKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAI  338 (359)
Q Consensus       272 ~~~~~~~~~~~~~~~~i~~~~~~~~l~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~  338 (359)
                                             +.++++|+||.++....-++       .+.++++.++++.....
T Consensus        75 -----------------------~~~~~ADIVVsa~G~~~~i~-------~~~ik~gavVIDvG~~~  111 (160)
T PF02882_consen   75 -----------------------EITRRADIVVSAVGKPNLIK-------ADWIKPGAVVIDVGINY  111 (160)
T ss_dssp             -----------------------HHHTTSSEEEE-SSSTT-B--------GGGS-TTEEEEE--CEE
T ss_pred             -----------------------ceeeeccEEeeeeccccccc-------cccccCCcEEEecCCcc
Confidence                                   23688999999996443222       33568899888765443

Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....

>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional

Probab=94.96  E-value=0.13  Score=53.67  Aligned_cols=69  Identities=9%  Similarity=0.039  Sum_probs=45.9

Q ss_pred             CCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceecCC
Q psy9056           3 AEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEP   82 (359)
Q Consensus         3 a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~~~   82 (359)
                      +-|||+-....||+++|.++  +.|++      +.|.++.+.+|...-   ++.+ +-..-.++|++.+++|+||+++|.
T Consensus       291 ggSGGAlA~g~aD~VlMle~--A~~sV------isPEgaAsILwkd~~---~A~e-AAe~lkiTa~dL~~lGiiD~IIpE  358 (762)
T PLN03229        291 GGSGGALAIGCANKLLMLEN--AVFYV------ASPEACAAILWKSAK---AAPK-AAEKLRITAQELCRLQIADGIIPE  358 (762)
T ss_pred             cchHHHHHhhcCCEEEEecC--CeEEe------cCHHHHHHHHhcCcc---cHHH-HHHHcCCCHHHHHhCCCCeeeccC
Confidence            44566666677999999988  66554      234444444444322   2222 233568999999999999999986


Q ss_pred             C
Q psy9056          83 L   83 (359)
Q Consensus        83 ~   83 (359)
                      .
T Consensus       359 p  359 (762)
T PLN03229        359 P  359 (762)
T ss_pred             C
Confidence            3

>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=94.96  E-value=0.073  Score=44.75  Aligned_cols=92  Identities=17%  Similarity=0.181  Sum_probs=64.4

Q ss_pred             hHHHHHhHhhhhhhhhcCCCCCCCCccEEEEECC-CcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhh
Q psy9056         195 SKGLMGLFRAQTECKKNRLGKPQTPVKTVAVLGA-GLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKR  273 (359)
Q Consensus       195 ~~~~~~af~~k~~~~~~~~~~~~~~~~kI~IIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~  273 (359)
                      .-+++..++++..-   +     ..=++|.|+|- ...|.+++..|.+.|..|.+.+.+-..++                
T Consensus        11 t~~a~~~ll~~~~~---~-----~~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t~~l~----------------   66 (140)
T cd05212          11 VAKAVKELLNKEGV---R-----LDGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKTIQLQ----------------   66 (140)
T ss_pred             HHHHHHHHHHHcCC---C-----CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCCcCHH----------------
Confidence            44566666655431   1     22379999995 89999999999999999999986532111                


Q ss_pred             ccCChHHHHhhhcccccccCcCCCCCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCC
Q psy9056         274 KKMSALDRDRYLASLVGTLSYDPFKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAI  338 (359)
Q Consensus       274 ~~~~~~~~~~~~~~i~~~~~~~~l~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~  338 (359)
                                           +.+++||+||.++....-++       .+.+++++++++.....
T Consensus        67 ---------------------~~v~~ADIVvsAtg~~~~i~-------~~~ikpGa~Vidvg~~~  103 (140)
T cd05212          67 ---------------------SKVHDADVVVVGSPKPEKVP-------TEWIKPGATVINCSPTK  103 (140)
T ss_pred             ---------------------HHHhhCCEEEEecCCCCccC-------HHHcCCCCEEEEcCCCc
Confidence                                 24789999999997553222       33477899888766543

NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional

>PRK06194 hypothetical protein; Provisional

Probab=94.94  E-value=0.21  Score=46.43  Aligned_cols=44  Identities=20%  Similarity=0.346  Sum_probs=37.0

Q ss_pred             CccEEEEECC-CcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHH
Q psy9056         219 PVKTVAVLGA-GLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQ  262 (359)
Q Consensus       219 ~~~kI~IIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~  262 (359)
                      ..++|-|.|+ |.+|..++..|++.|++|+++|++.+.++.....
T Consensus         5 ~~k~vlVtGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~   49 (287)
T PRK06194          5 AGKVAVITGAASGFGLAFARIGAALGMKLVLADVQQDALDRAVAE   49 (287)
T ss_pred             CCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHH
Confidence            3468889986 9999999999999999999999998776665443

>PRK12551 ATP-dependent Clp protease proteolytic subunit; Reviewed

Probab=94.94  E-value=0.066  Score=47.63  Aligned_cols=80  Identities=15%  Similarity=0.108  Sum_probs=52.3

Q ss_pred             CCCCchHHHHHHhcCE--EEEecCCceEEeccccCCCCCCCcc---------------hHhHHhhhcCh--HHHHHHHhc
Q psy9056           1 MFAEPSLATVALACHY--RIVVKDKKTGLGLPEVMLGLLPGAG---------------GTQRLPKLTAL--PNVLDMTLT   61 (359)
Q Consensus         1 ~~a~GgG~~lalacD~--ria~~~~~~~~~~pe~~~Gi~p~~g---------------~~~~l~~~~g~--~~a~~~~lt   61 (359)
                      |+|.+.|..|++++|.  |++.++  ++|-+-...-|..-...               ....+.+..|.  ....+++-.
T Consensus        92 G~AaS~AslIl~aG~~~~R~~~p~--a~iMIHqP~~~~~G~a~di~~~a~~l~~~~~~~~~~ya~~tG~~~~~i~~~~~r  169 (196)
T PRK12551         92 GLAASMGAFLLCAGAKGKRSSLQH--SRIMIHQPLGGARGQASDIRIQADEILFLKERLNTELSERTGQPLERIQEDTDR  169 (196)
T ss_pred             EEehhHHHHHHhCCCCCceecCCC--CEEEEecCCcccCCCcchHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhhc
Confidence            5678889999999885  888877  77777776433211110               01112223332  334455556


Q ss_pred             CCCCCHHHHHHcCCcceecCC
Q psy9056          62 GKTLKADKAKKMGIVDQLVEP   82 (359)
Q Consensus        62 g~~~~a~eA~~~Glv~~~~~~   82 (359)
                      ...++|+||+++||+|++++.
T Consensus       170 d~~msa~EA~eyGliD~I~~~  190 (196)
T PRK12551        170 DFFMSPSEAVEYGLIDLVIDK  190 (196)
T ss_pred             CcCCCHHHHHHcCCCcEEecc
Confidence            667999999999999999976

>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating)

Probab=94.94  E-value=0.085  Score=49.70  Aligned_cols=34  Identities=15%  Similarity=0.240  Sum_probs=26.7

Q ss_pred             EEEEECCCcchHHHHHHHHHC-CCee-EEecCCHHH
Q psy9056         222 TVAVLGAGLMGAGIAHVTVDK-GYNT-IVKDSFEKG  255 (359)
Q Consensus       222 kI~IIG~G~mG~~iA~~l~~~-G~~V-~l~d~~~~~  255 (359)
                      +|+|||+|.+|..++..+.+. +.++ .++|++++.
T Consensus         3 rVAIIG~G~IG~~h~~~ll~~~~~elvaV~d~d~es   38 (285)
T TIGR03215         3 KVAIIGSGNIGTDLMYKLLRSEHLEMVAMVGIDPES   38 (285)
T ss_pred             EEEEEeCcHHHHHHHHHHHhCCCcEEEEEEeCCccc
Confidence            899999999999987777654 5565 457888865

Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.

>PRK09186 flagellin modification protein A; Provisional

Probab=94.88  E-value=0.37  Score=43.82  Aligned_cols=41  Identities=29%  Similarity=0.444  Sum_probs=35.9

Q ss_pred             cEEEEECC-CcchHHHHHHHHHCCCeeEEecCCHHHHHHHHH
Q psy9056         221 KTVAVLGA-GLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLG  261 (359)
Q Consensus       221 ~kI~IIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~  261 (359)
                      ++|.|.|+ |.+|..+|..|++.|++|++.+++++.++....
T Consensus         5 k~vlItGas~giG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~   46 (256)
T PRK09186          5 KTILITGAGGLIGSALVKAILEAGGIVIAADIDKEALNELLE   46 (256)
T ss_pred             CEEEEECCCchHHHHHHHHHHHCCCEEEEEecChHHHHHHHH
Confidence            67889996 899999999999999999999999887665544

>PRK05597 molybdopterin biosynthesis protein MoeB; Validated

Probab=94.88  E-value=0.07  Score=51.99  Aligned_cols=33  Identities=27%  Similarity=0.329  Sum_probs=30.5

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCC-eeEEecCCH
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGY-NTIVKDSFE  253 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~-~V~l~d~~~  253 (359)
                      .+|.|||+|.+|+.++..|+..|. +++++|.+.
T Consensus        29 ~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~   62 (355)
T PRK05597         29 AKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDT   62 (355)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence            689999999999999999999998 789998775

>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways

Probab=94.88  E-value=0.023  Score=54.00  Aligned_cols=34  Identities=24%  Similarity=0.328  Sum_probs=29.7

Q ss_pred             EEEEECCCcchHHHHHHHHHCCCeeEEecCCHHH
Q psy9056         222 TVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKG  255 (359)
Q Consensus       222 kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~  255 (359)
                      +|.|||+|.-|..+|..|+++|++|+++|+++..
T Consensus         3 dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~~   36 (356)
T PF01494_consen    3 DVAIVGAGPAGLAAALALARAGIDVTIIERRPDP   36 (356)
T ss_dssp             EEEEE--SHHHHHHHHHHHHTTCEEEEEESSSSC
T ss_pred             eEEEECCCHHHHHHHHHHHhcccccccchhcccc
Confidence            6999999999999999999999999999998653

In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....

>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein

Probab=94.87  E-value=0.081  Score=48.70  Aligned_cols=33  Identities=21%  Similarity=0.188  Sum_probs=29.1

Q ss_pred             cEEEEECCCcchHHHHHHHHHCC-----------CeeEEecCCH
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKG-----------YNTIVKDSFE  253 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G-----------~~V~l~d~~~  253 (359)
                      .+|.|||+|-+|+.++..|++.|           .+++++|.|.
T Consensus        12 ~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~   55 (244)
T TIGR03736        12 VSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDT   55 (244)
T ss_pred             CeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCE
Confidence            58999999999999999999874           2899999774

A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.

>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.86  E-value=0.025  Score=56.22  Aligned_cols=38  Identities=32%  Similarity=0.401  Sum_probs=34.5

Q ss_pred             CCccEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHH
Q psy9056         218 TPVKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKG  255 (359)
Q Consensus       218 ~~~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~  255 (359)
                      |+.++|.|||.|.+|.++|..+.+.|++|+++|++++.
T Consensus         1 ~~~~~i~iiGlG~~G~slA~~l~~~G~~V~g~D~~~~~   38 (418)
T PRK00683          1 MGLQRVVVLGLGVTGKSIARFLAQKGVYVIGVDKSLEA   38 (418)
T ss_pred             CCCCeEEEEEECHHHHHHHHHHHHCCCEEEEEeCCccc
Confidence            45679999999999999999999999999999988764

>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA

Probab=94.85  E-value=0.055  Score=49.23  Aligned_cols=33  Identities=27%  Similarity=0.257  Sum_probs=30.2

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCC-eeEEecCCH
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGY-NTIVKDSFE  253 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~-~V~l~d~~~  253 (359)
                      .+|.|+|+|.+|+.++..|++.|. +++++|.+.
T Consensus        22 ~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~   55 (228)
T cd00757          22 ARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDV   55 (228)
T ss_pred             CcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence            689999999999999999999998 788998664

Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).

>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional

Probab=94.81  E-value=0.16  Score=51.17  Aligned_cols=36  Identities=28%  Similarity=0.455  Sum_probs=32.5

Q ss_pred             CccEEEEECCCcchHH-HHHHHHHCCCeeEEecCCHH
Q psy9056         219 PVKTVAVLGAGLMGAG-IAHVTVDKGYNTIVKDSFEK  254 (359)
Q Consensus       219 ~~~kI~IIG~G~mG~~-iA~~l~~~G~~V~l~d~~~~  254 (359)
                      +.++|.|||.|..|.+ +|..|.+.|++|.++|.++.
T Consensus         6 ~~~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~~   42 (461)
T PRK00421          6 RIKRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKES   42 (461)
T ss_pred             CCCEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCCC
Confidence            4468999999999999 79999999999999998764

>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1

Probab=94.81  E-value=0.032  Score=53.06  Aligned_cols=31  Identities=23%  Similarity=0.362  Sum_probs=29.7

Q ss_pred             EEEEECCCcchHHHHHHHHHCCCeeEEecCC
Q psy9056         222 TVAVLGAGLMGAGIAHVTVDKGYNTIVKDSF  252 (359)
Q Consensus       222 kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~  252 (359)
                      .|.|||+|..|.++|..|++.|++|+++|++
T Consensus         1 DvvIIGaGi~G~~~A~~La~~G~~V~l~e~~   31 (358)
T PF01266_consen    1 DVVIIGAGIAGLSTAYELARRGHSVTLLERG   31 (358)
T ss_dssp             EEEEECTSHHHHHHHHHHHHTTSEEEEEESS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCeEEEEeec
Confidence            4899999999999999999999999999988

1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....

>PRK00711 D-amino acid dehydrogenase small subunit; Validated

Probab=94.80  E-value=0.031  Score=55.16  Aligned_cols=33  Identities=30%  Similarity=0.397  Sum_probs=31.1

Q ss_pred             EEEEECCCcchHHHHHHHHHCCCeeEEecCCHH
Q psy9056         222 TVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEK  254 (359)
Q Consensus       222 kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~  254 (359)
                      +|.|||+|.+|.++|..++++|++|+++|++..
T Consensus         2 ~v~IVG~Gi~Gls~A~~l~~~g~~V~vle~~~~   34 (416)
T PRK00711          2 RVVVLGSGVIGVTSAWYLAQAGHEVTVIDRQPG   34 (416)
T ss_pred             EEEEECCcHHHHHHHHHHHHCCCEEEEEeCCCc
Confidence            799999999999999999999999999999753

>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=94.77  E-value=0.1  Score=48.97  Aligned_cols=93  Identities=16%  Similarity=0.158  Sum_probs=66.3

Q ss_pred             hhhHHHHHhHhhhhhhhhcCCCCCCCCccEEEEECCC-cchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHH
Q psy9056         193 PQSKGLMGLFRAQTECKKNRLGKPQTPVKTVAVLGAG-LMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAV  271 (359)
Q Consensus       193 ~~~~~~~~af~~k~~~~~~~~~~~~~~~~kI~IIG~G-~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~  271 (359)
                      |-+..|+-.++++....        -.=++|.|||-+ ..|.++|..+.+.|..|+++..+...++              
T Consensus       133 PcTp~av~~ll~~~~i~--------l~Gk~V~ViGrs~~vGrpla~lL~~~~atVtv~hs~t~~L~--------------  190 (279)
T PRK14178        133 PCTPNGIMTLLHEYKIS--------IAGKRAVVVGRSIDVGRPMAALLLNADATVTICHSKTENLK--------------  190 (279)
T ss_pred             CCCHHHHHHHHHHcCCC--------CCCCEEEEECCCccccHHHHHHHHhCCCeeEEEecChhHHH--------------
Confidence            55667777777766421        222799999987 9999999999999999999986653322              


Q ss_pred             hhccCChHHHHhhhcccccccCcCCCCCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCC
Q psy9056         272 KRKKMSALDRDRYLASLVGTLSYDPFKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSA  337 (359)
Q Consensus       272 ~~~~~~~~~~~~~~~~i~~~~~~~~l~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~  337 (359)
                                             +.+++||+||-+++-..-+..       ++++++++|++....
T Consensus       191 -----------------------~~~~~ADIvI~Avgk~~lv~~-------~~vk~GavVIDVgi~  226 (279)
T PRK14178        191 -----------------------AELRQADILVSAAGKAGFITP-------DMVKPGATVIDVGIN  226 (279)
T ss_pred             -----------------------HHHhhCCEEEECCCcccccCH-------HHcCCCcEEEEeecc
Confidence                                   236889999999963322222       235899998876543

>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional

Probab=94.76  E-value=0.031  Score=53.96  Aligned_cols=92  Identities=18%  Similarity=0.181  Sum_probs=55.9

Q ss_pred             ccEEEEECC-CcchHHHHHHHHHCCCee---EEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccC-c
Q psy9056         220 VKTVAVLGA-GLMGAGIAHVTVDKGYNT---IVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLS-Y  294 (359)
Q Consensus       220 ~~kI~IIG~-G~mG~~iA~~l~~~G~~V---~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~-~  294 (359)
                      +.||+|+|+ |+.|..+...|.++||++   ..+.++.+.-+..    .  +     .+           ..+.+.+. .
T Consensus         1 ~~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~~~~g~~l----~--~-----~g-----------~~i~v~d~~~   58 (334)
T PRK14874          1 GYNVAVVGATGAVGREMLNILEERNFPVDKLRLLASARSAGKEL----S--F-----KG-----------KELKVEDLTT   58 (334)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEccccCCCee----e--e-----CC-----------ceeEEeeCCH
Confidence            358999997 999999999999988854   5554443211110    0  0     00           01222111 1


Q ss_pred             CCCCCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCC
Q psy9056         295 DPFKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAI  338 (359)
Q Consensus       295 ~~l~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~  338 (359)
                      ..+.++|+||+|+|...  -+++...+.+   .+++|++.++..
T Consensus        59 ~~~~~vDvVf~A~g~g~--s~~~~~~~~~---~G~~VIDlS~~~   97 (334)
T PRK14874         59 FDFSGVDIALFSAGGSV--SKKYAPKAAA---AGAVVIDNSSAF   97 (334)
T ss_pred             HHHcCCCEEEECCChHH--HHHHHHHHHh---CCCEEEECCchh
Confidence            23578999999998665  3455555433   467788777654

>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1

Probab=94.75  E-value=0.081  Score=48.22  Aligned_cols=33  Identities=30%  Similarity=0.400  Sum_probs=29.8

Q ss_pred             CccEEEEECCCcchHHHHHHHHHCCCeeE-EecC
Q psy9056         219 PVKTVAVLGAGLMGAGIAHVTVDKGYNTI-VKDS  251 (359)
Q Consensus       219 ~~~kI~IIG~G~mG~~iA~~l~~~G~~V~-l~d~  251 (359)
                      .-++|+|.|.|++|..++..|.+.|..|+ +.|.
T Consensus        30 ~~~~v~I~G~G~VG~~~a~~L~~~g~~vv~v~D~   63 (227)
T cd01076          30 AGARVAIQGFGNVGSHAARFLHEAGAKVVAVSDS   63 (227)
T ss_pred             cCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            34799999999999999999999999988 6677

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids

>PLN03075 nicotianamine synthase; Provisional

Probab=94.75  E-value=0.21  Score=47.29  Aligned_cols=102  Identities=14%  Similarity=0.083  Sum_probs=68.3

Q ss_pred             CccEEEEECCCcchHHHHHHHHHCC--CeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccc-cCc-
Q psy9056         219 PVKTVAVLGAGLMGAGIAHVTVDKG--YNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGT-LSY-  294 (359)
Q Consensus       219 ~~~kI~IIG~G~mG~~iA~~l~~~G--~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~-~~~-  294 (359)
                      .-++|..||+|..|.+-...+++..  -.++.+|.+++..+.+++.+...      .+         ..+++++. .|. 
T Consensus       123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~------~g---------L~~rV~F~~~Da~  187 (296)
T PLN03075        123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSD------PD---------LSKRMFFHTADVM  187 (296)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhc------cC---------ccCCcEEEECchh
Confidence            3489999999998876655555443  36999999999988877654310      00         01234332 122 


Q ss_pred             ---CCCCCccEEEEcccC--CHHHHHHHHHHHHHhCCCCcEEEEcC
Q psy9056         295 ---DPFKNADMVIEAVFE--DINIKHQVIKEIEAVVPPHCVVATNT  335 (359)
Q Consensus       295 ---~~l~~aD~Vi~avp~--~~~~k~~v~~~l~~~~~~~~ii~s~t  335 (359)
                         ....+-|+|+..+--  +..-+..+++.+.+.++++.+++.-+
T Consensus       188 ~~~~~l~~FDlVF~~ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~  233 (296)
T PLN03075        188 DVTESLKEYDVVFLAALVGMDKEEKVKVIEHLGKHMAPGALLMLRS  233 (296)
T ss_pred             hcccccCCcCEEEEecccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence               235678999987521  22457799999999999999877554

>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated

Probab=94.72  E-value=0.52  Score=42.23  Aligned_cols=42  Identities=29%  Similarity=0.226  Sum_probs=36.0

Q ss_pred             CCccEEEEECC-CcchHHHHHHHHHCCCeeEEecCCHHHHHHH
Q psy9056         218 TPVKTVAVLGA-GLMGAGIAHVTVDKGYNTIVKDSFEKGLARG  259 (359)
Q Consensus       218 ~~~~kI~IIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~  259 (359)
                      +..++|.|.|+ |.+|..++..++++|++|++++++++..+..
T Consensus         3 ~~~~~ilItGasg~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~   45 (246)
T PRK05653          3 LQGKTALVTGASRGIGRAIALRLAADGAKVVIYDSNEEAAEAL   45 (246)
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChhHHHHH
Confidence            34478999996 9999999999999999999999998765543

>PRK05724 acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated

Probab=94.70  E-value=0.19  Score=47.88  Aligned_cols=99  Identities=14%  Similarity=0.134  Sum_probs=57.5

Q ss_pred             CchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceecCCC
Q psy9056           4 EPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPL   83 (359)
Q Consensus         4 ~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~~~~   83 (359)
                      -|||.--...||+++|.++  +.|+.       .++-|.+..+.+-  ..++.+..- .-.+++.++++.|+||+++|..
T Consensus       201 ~sGGAla~~~aD~v~m~~~--A~~sv-------isPEg~a~Il~~~--~~~a~~aae-~~~ita~~l~~~g~iD~II~Ep  268 (319)
T PRK05724        201 GSGGALAIGVGDRVLMLEY--STYSV-------ISPEGCASILWKD--ASKAPEAAE-AMKITAQDLKELGIIDEIIPEP  268 (319)
T ss_pred             cHHHHHHHhccCeeeeecC--ceEee-------cCHHHHHHHHhcC--chhHHHHHH-HcCCCHHHHHHCCCceEeccCC
Confidence            3455544445999999987  65544       4444444444332  233333333 5568999999999999999863


Q ss_pred             CCCCCCcchhhHHHHHHHHHHHHHHHhcCcc
Q psy9056          84 GPGLNHPEERTMEYLEEVAVNTASQLASGKL  114 (359)
Q Consensus        84 ~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~  114 (359)
                      ..+-.+.++.....+.+...+...++...++
T Consensus       269 ~gga~~~~~~~~~~l~~~i~~~l~~l~~~~~  299 (319)
T PRK05724        269 LGGAHRDPEAAAAALKEALLEALAELKGLSP  299 (319)
T ss_pred             CCCccCCHHHHHHHHHHHHHHHHHHHHCCCH
Confidence            1222233434445555555555555555444

>PRK08762 molybdopterin biosynthesis protein MoeB; Validated

Probab=94.68  E-value=0.077  Score=52.10  Aligned_cols=32  Identities=25%  Similarity=0.258  Sum_probs=30.3

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCC-eeEEecCC
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGY-NTIVKDSF  252 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~-~V~l~d~~  252 (359)
                      ++|.|+|+|-+|+.++..|+..|. +++++|.+
T Consensus       136 ~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d  168 (376)
T PRK08762        136 ARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHD  168 (376)
T ss_pred             CcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            589999999999999999999998 79999988

>PF00574 CLP_protease: Clp protease; InterPro: IPR001907 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=94.66  E-value=0.012  Score=51.68  Aligned_cols=80  Identities=18%  Similarity=0.187  Sum_probs=51.3

Q ss_pred             CCCCchHHHHHHhcCE--EEEecCCceEEeccccCCCCCCCcchH---------------hHHhhhcC--hHHHHHHHhc
Q psy9056           1 MFAEPSLATVALACHY--RIVVKDKKTGLGLPEVMLGLLPGAGGT---------------QRLPKLTA--LPNVLDMTLT   61 (359)
Q Consensus         1 ~~a~GgG~~lalacD~--ria~~~~~~~~~~pe~~~Gi~p~~g~~---------------~~l~~~~g--~~~a~~~~lt   61 (359)
                      |.|...|+.++++||.  |++.++  +.|.+-++..+..-...-.               ..+....|  .....+++-.
T Consensus        83 G~aaSaa~~i~~ag~~~~R~~~~~--s~~m~H~p~~~~~g~~~~l~~~~~~l~~~~~~~~~~~~~~tg~~~~~i~~~~~~  160 (182)
T PF00574_consen   83 GLAASAATLIFLAGDKGKRYASPN--SRFMIHQPSTGSGGNASELREQAKELEKLNERIANIYAERTGLSKEEIEELMDR  160 (182)
T ss_dssp             EEEETHHHHHHHTSSTTTEEE-TT---EEEES-CEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHTS-HHHHHHHCSS
T ss_pred             CccccceehhhhcCCcCceeeeec--CEEEeecceeecccccchhHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHhC
Confidence            3567889999999999  999988  9999998876653311110               11111212  2233344444


Q ss_pred             CCCCCHHHHHHcCCcceecCC
Q psy9056          62 GKTLKADKAKKMGIVDQLVEP   82 (359)
Q Consensus        62 g~~~~a~eA~~~Glv~~~~~~   82 (359)
                      ...++++||+++||+|+++.+
T Consensus       161 ~~~l~a~EA~~~GiiD~I~~~  181 (182)
T PF00574_consen  161 DTWLSAEEALEYGIIDEIIES  181 (182)
T ss_dssp             TEEEEHHHHHHHTSSSEEESS
T ss_pred             CccccHHHHHHcCCCCEeccC
Confidence            556899999999999999864

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase family S14 (ClpP endopeptidase family, clan SK). ClpP is an ATP-dependent protease that cleaves a number of proteins, such as casein and albumin []. It exists as a heterodimer of ATP-binding regulatory A and catalytic P subunits, both of which are required for effective levels of protease activity in the presence of ATP [], although the P subunit alone does possess some catalytic activity. This family of sequences represent the P subunit. Proteases highly similar to ClpP have been found to be encoded in the genome of bacteria, metazoa, some viruses and in the chloroplast of plants. A number of the proteins in this family are classified as non-peptidase homologues as they have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for catalytic activity. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2ZL3_L 2ZL0_F 2ZL2_M 2ZL4_C 1TG6_D 2F6I_D 3V5I_b 3V5E_M 3QWD_D 2DEO_A ....

>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=94.62  E-value=0.085  Score=47.73  Aligned_cols=35  Identities=34%  Similarity=0.314  Sum_probs=30.6

Q ss_pred             CccEEEEECCCcchHHHHHHHHHCCC-eeEEecCCH
Q psy9056         219 PVKTVAVLGAGLMGAGIAHVTVDKGY-NTIVKDSFE  253 (359)
Q Consensus       219 ~~~kI~IIG~G~mG~~iA~~l~~~G~-~V~l~d~~~  253 (359)
                      .-++|+|.|.|++|..+|..|.+.|. .|.+.|.+.
T Consensus        22 ~g~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~g   57 (217)
T cd05211          22 EGLTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPDG   57 (217)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCC
Confidence            33799999999999999999999988 566678887

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral

>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional

Probab=94.62  E-value=0.56  Score=42.73  Aligned_cols=45  Identities=24%  Similarity=0.192  Sum_probs=38.3

Q ss_pred             CCccEEEEECC-CcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHH
Q psy9056         218 TPVKTVAVLGA-GLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQ  262 (359)
Q Consensus       218 ~~~~kI~IIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~  262 (359)
                      ++.++|.|.|+ |.+|..++..|+++|++|++.+++++..+.....
T Consensus         5 ~~~~~vlItGasg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~   50 (262)
T PRK13394          5 LNGKTAVVTGAASGIGKEIALELARAGAAVAIADLNQDGANAVADE   50 (262)
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHH
Confidence            34578999997 9999999999999999999999999876665543

>PRK06057 short chain dehydrogenase; Provisional

Probab=94.61  E-value=0.079  Score=48.49  Aligned_cols=44  Identities=14%  Similarity=0.123  Sum_probs=37.5

Q ss_pred             CCccEEEEECC-CcchHHHHHHHHHCCCeeEEecCCHHHHHHHHH
Q psy9056         218 TPVKTVAVLGA-GLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLG  261 (359)
Q Consensus       218 ~~~~kI~IIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~  261 (359)
                      ++-++|-|+|+ |.+|..++..+++.|++|++.+++++..+....
T Consensus         5 ~~~~~vlItGasggIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~   49 (255)
T PRK06057          5 LAGRVAVITGGGSGIGLATARRLAAEGATVVVGDIDPEAGKAAAD   49 (255)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH
Confidence            44578999998 999999999999999999999999877655433

>PLN00016 RNA-binding protein; Provisional

Probab=94.61  E-value=0.11  Score=50.80  Aligned_cols=37  Identities=19%  Similarity=0.230  Sum_probs=33.1

Q ss_pred             CccEEEEE----CC-CcchHHHHHHHHHCCCeeEEecCCHHH
Q psy9056         219 PVKTVAVL----GA-GLMGAGIAHVTVDKGYNTIVKDSFEKG  255 (359)
Q Consensus       219 ~~~kI~II----G~-G~mG~~iA~~l~~~G~~V~l~d~~~~~  255 (359)
                      .+++|.|+    |+ |.+|..++..|.+.||+|+++++++..
T Consensus        51 ~~~~VLVt~~~~GatG~iG~~lv~~L~~~G~~V~~l~R~~~~   92 (378)
T PLN00016         51 EKKKVLIVNTNSGGHAFIGFYLAKELVKAGHEVTLFTRGKEP   92 (378)
T ss_pred             ccceEEEEeccCCCceeEhHHHHHHHHHCCCEEEEEecCCcc
Confidence            34689999    75 999999999999999999999998764

>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.61  E-value=0.18  Score=50.88  Aligned_cols=34  Identities=26%  Similarity=0.321  Sum_probs=31.9

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCCeeEEecCCHH
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEK  254 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~  254 (359)
                      ++|+|+|.|..|.++|..|.+.|++|.++|.++.
T Consensus        15 ~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~   48 (458)
T PRK01710         15 KKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKSE   48 (458)
T ss_pred             CeEEEEcccHHHHHHHHHHHHCCCEEEEECCCCC
Confidence            6899999999999999999999999999998753

>PRK05600 thiamine biosynthesis protein ThiF; Validated

Probab=94.61  E-value=0.081  Score=51.81  Aligned_cols=33  Identities=24%  Similarity=0.305  Sum_probs=30.5

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCC-eeEEecCCH
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGY-NTIVKDSFE  253 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~-~V~l~d~~~  253 (359)
                      .+|.|||+|.+|+.++..|+..|. +++++|.+.
T Consensus        42 ~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D~   75 (370)
T PRK05600         42 ARVLVIGAGGLGCPAMQSLASAGVGTITLIDDDT   75 (370)
T ss_pred             CcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCE
Confidence            589999999999999999999997 899999873

>PRK06847 hypothetical protein; Provisional

Probab=94.60  E-value=0.034  Score=54.03  Aligned_cols=35  Identities=23%  Similarity=0.260  Sum_probs=32.5

Q ss_pred             ccEEEEECCCcchHHHHHHHHHCCCeeEEecCCHH
Q psy9056         220 VKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEK  254 (359)
Q Consensus       220 ~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~  254 (359)
                      +++|.|||+|.-|..+|..|.+.|++|++++++++
T Consensus         4 ~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~   38 (375)
T PRK06847          4 VKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPE   38 (375)
T ss_pred             cceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence            57899999999999999999999999999998764

>PRK11579 putative oxidoreductase; Provisional

Probab=94.59  E-value=0.091  Score=50.85  Aligned_cols=67  Identities=16%  Similarity=0.197  Sum_probs=43.2

Q ss_pred             cEEEEECCCcchHH-HHHHHHHC-CCeeE-EecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcC-C
Q psy9056         221 KTVAVLGAGLMGAG-IAHVTVDK-GYNTI-VKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYD-P  296 (359)
Q Consensus       221 ~kI~IIG~G~mG~~-iA~~l~~~-G~~V~-l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~  296 (359)
                      -||||||+|.+|.. .+..+.+. +.+|+ ++|+++++...   .          .            ....+.+|++ .
T Consensus         5 irvgiiG~G~i~~~~~~~~~~~~~~~~l~av~d~~~~~~~~---~----------~------------~~~~~~~~~~el   59 (346)
T PRK11579          5 IRVGLIGYGYASKTFHAPLIAGTPGLELAAVSSSDATKVKA---D----------W------------PTVTVVSEPQHL   59 (346)
T ss_pred             ceEEEECCCHHHHHHHHHHHhhCCCCEEEEEECCCHHHHHh---h----------C------------CCCceeCCHHHH
Confidence            48999999999985 45555543 66664 68998765321   0          0            0122345553 3


Q ss_pred             C--CCccEEEEcccCCHH
Q psy9056         297 F--KNADMVIEAVFEDIN  312 (359)
Q Consensus       297 l--~~aD~Vi~avp~~~~  312 (359)
                      +  .+.|+|++|+|....
T Consensus        60 l~~~~vD~V~I~tp~~~H   77 (346)
T PRK11579         60 FNDPNIDLIVIPTPNDTH   77 (346)
T ss_pred             hcCCCCCEEEEcCCcHHH
Confidence            4  468999999997764

>PRK05854 short chain dehydrogenase; Provisional

Probab=94.58  E-value=0.54  Score=44.70  Aligned_cols=49  Identities=22%  Similarity=0.234  Sum_probs=40.1

Q ss_pred             CCCCCccEEEEECC-CcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHH
Q psy9056         215 KPQTPVKTVAVLGA-GLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQI  263 (359)
Q Consensus       215 ~~~~~~~kI~IIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~  263 (359)
                      .+.++-+++-|.|+ +-+|..+|..|++.|++|++.+++.++.++..+.+
T Consensus         9 ~~~l~gk~~lITGas~GIG~~~a~~La~~G~~Vil~~R~~~~~~~~~~~l   58 (313)
T PRK05854          9 VPDLSGKRAVVTGASDGLGLGLARRLAAAGAEVILPVRNRAKGEAAVAAI   58 (313)
T ss_pred             CcccCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence            34455578888886 88999999999999999999999998877655443

>PRK08163 salicylate hydroxylase; Provisional

Probab=94.57  E-value=0.035  Score=54.39  Aligned_cols=34  Identities=18%  Similarity=0.316  Sum_probs=32.1

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCCeeEEecCCHH
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEK  254 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~  254 (359)
                      .+|.|||+|..|.++|..|+++|++|+++|++++
T Consensus         5 ~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~   38 (396)
T PRK08163          5 TPVLIVGGGIGGLAAALALARQGIKVKLLEQAAE   38 (396)
T ss_pred             CeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCcc
Confidence            5899999999999999999999999999998865

>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]

Probab=94.56  E-value=0.11  Score=49.96  Aligned_cols=86  Identities=22%  Similarity=0.190  Sum_probs=61.5

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcCCCCCc
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPFKNA  300 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~a  300 (359)
                      |++.|.|.|-.|.++|..+...|-+|++++.||-+.-++                        .++.+.+.+-.++...+
T Consensus       210 K~vVV~GYG~vGrG~A~~~rg~GA~ViVtEvDPI~AleA------------------------~MdGf~V~~m~~Aa~~g  265 (420)
T COG0499         210 KNVVVAGYGWVGRGIAMRLRGMGARVIVTEVDPIRALEA------------------------AMDGFRVMTMEEAAKTG  265 (420)
T ss_pred             ceEEEecccccchHHHHHhhcCCCeEEEEecCchHHHHH------------------------hhcCcEEEEhHHhhhcC
Confidence            578899999999999999999999999999999653222                        22445555555778889


Q ss_pred             cEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEc
Q psy9056         301 DMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATN  334 (359)
Q Consensus       301 D~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~  334 (359)
                      |++|-++-..--+.    .+....++++.|++..
T Consensus       266 DifiT~TGnkdVi~----~eh~~~MkDgaIl~N~  295 (420)
T COG0499         266 DIFVTATGNKDVIR----KEHFEKMKDGAILANA  295 (420)
T ss_pred             CEEEEccCCcCccC----HHHHHhccCCeEEecc
Confidence            99998885332222    2233346778888643

>PRK09414 glutamate dehydrogenase; Provisional

Probab=94.55  E-value=0.22  Score=49.85  Aligned_cols=80  Identities=13%  Similarity=0.001  Sum_probs=50.2

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCCeeEEe-c----------CCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccc
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVK-D----------SFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLV  289 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~~V~l~-d----------~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~  289 (359)
                      ++|+|.|.|++|...|..+...|..|+.+ |          .|.+.+.+....-...+..+.+..            ...
T Consensus       233 ~rVaIqGfGnVG~~~A~~L~~~GakVVavsDs~G~iyn~~GLD~~~L~~~k~~~~~~l~~~~~~~------------~~~  300 (445)
T PRK09414        233 KRVVVSGSGNVAIYAIEKAQQLGAKVVTCSDSSGYVYDEEGIDLEKLKEIKEVRRGRISEYAEEF------------GAE  300 (445)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCceEECCCCCCHHHHHHHHHhcCCchhhhhhhc------------CCe
Confidence            69999999999999999999999998877 8          676655443321101111111100            111


Q ss_pred             cccCcCC-CCCccEEEEcccCCHH
Q psy9056         290 GTLSYDP-FKNADMVIEAVFEDIN  312 (359)
Q Consensus       290 ~~~~~~~-l~~aD~Vi~avp~~~~  312 (359)
                      ..+..+. -.+||++|.|..++.-
T Consensus       301 ~i~~~~i~~~d~DVliPaAl~n~I  324 (445)
T PRK09414        301 YLEGGSPWSVPCDIALPCATQNEL  324 (445)
T ss_pred             ecCCccccccCCcEEEecCCcCcC
Confidence            1111122 2579999999987763

>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional

Probab=94.53  E-value=0.59  Score=42.40  Aligned_cols=42  Identities=24%  Similarity=0.257  Sum_probs=36.5

Q ss_pred             ccEEEEECC-CcchHHHHHHHHHCCCeeEEecCCHHHHHHHHH
Q psy9056         220 VKTVAVLGA-GLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLG  261 (359)
Q Consensus       220 ~~kI~IIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~  261 (359)
                      -++|.|.|+ |.+|..++..|+..|++|++++++++..+....
T Consensus         4 ~~~vlItG~sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~   46 (258)
T PRK12429          4 GKVALVTGAASGIGLEIALALAKEGAKVVIADLNDEAAAAAAE   46 (258)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHH
Confidence            368999995 999999999999999999999999887665443

>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.53  E-value=0.089  Score=53.28  Aligned_cols=40  Identities=38%  Similarity=0.541  Sum_probs=35.3

Q ss_pred             CCCCccEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHH
Q psy9056         216 PQTPVKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKG  255 (359)
Q Consensus       216 ~~~~~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~  255 (359)
                      ++-..++|.|+|+|..|.++|..+.+.|++|.++|++...
T Consensus        11 ~~~~~~~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~   50 (473)
T PRK00141         11 PQELSGRVLVAGAGVSGRGIAAMLSELGCDVVVADDNETA   50 (473)
T ss_pred             ccccCCeEEEEccCHHHHHHHHHHHHCCCEEEEECCChHH
Confidence            4456689999999999999999999999999999987643

>PRK06753 hypothetical protein; Provisional

Probab=94.52  E-value=0.035  Score=53.94  Aligned_cols=34  Identities=26%  Similarity=0.393  Sum_probs=31.9

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCCeeEEecCCHH
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEK  254 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~  254 (359)
                      .+|.|||+|..|.+.|..|+++|++|+++++++.
T Consensus         1 ~~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~   34 (373)
T PRK06753          1 MKIAIIGAGIGGLTAAALLQEQGHEVKVFEKNES   34 (373)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Confidence            3799999999999999999999999999998875

>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=94.51  E-value=0.11  Score=48.89  Aligned_cols=93  Identities=16%  Similarity=0.129  Sum_probs=64.2

Q ss_pred             ChhhHHHHHhHhhhhhhhhcCCCCCCCCccEEEEECCCc-chHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHH
Q psy9056         192 TPQSKGLMGLFRAQTECKKNRLGKPQTPVKTVAVLGAGL-MGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGA  270 (359)
Q Consensus       192 s~~~~~~~~af~~k~~~~~~~~~~~~~~~~kI~IIG~G~-mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~  270 (359)
                      -|-+-+++-.++++..-.        -.=++|.|||-+. +|.++|..|.+.|..|++++..-..++             
T Consensus       144 ~PcTp~av~~ll~~~~i~--------l~Gk~vvViGrs~iVGkPla~lL~~~~atVtv~hs~T~~l~-------------  202 (287)
T PRK14176        144 VPCTPHGVIRALEEYGVD--------IEGKNAVIVGHSNVVGKPMAAMLLNRNATVSVCHVFTDDLK-------------  202 (287)
T ss_pred             CCCcHHHHHHHHHHcCCC--------CCCCEEEEECCCcccHHHHHHHHHHCCCEEEEEeccCCCHH-------------
Confidence            355667777777765421        1227999999877 999999999999999999984322111             


Q ss_pred             HhhccCChHHHHhhhcccccccCcCCCCCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCC
Q psy9056         271 VKRKKMSALDRDRYLASLVGTLSYDPFKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTS  336 (359)
Q Consensus       271 ~~~~~~~~~~~~~~~~~i~~~~~~~~l~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts  336 (359)
                                              +.++++|+||.|+--..     ++.  .++++++++|++...
T Consensus       203 ------------------------~~~~~ADIvv~AvG~p~-----~i~--~~~vk~gavVIDvGi  237 (287)
T PRK14176        203 ------------------------KYTLDADILVVATGVKH-----LIK--ADMVKEGAVIFDVGI  237 (287)
T ss_pred             ------------------------HHHhhCCEEEEccCCcc-----ccC--HHHcCCCcEEEEecc
Confidence                                    23688999998774222     221  235778999887654

>PRK06270 homoserine dehydrogenase; Provisional

Probab=94.49  E-value=0.083  Score=51.16  Aligned_cols=22  Identities=32%  Similarity=0.641  Sum_probs=19.8

Q ss_pred             cEEEEECCCcchHHHHHHHHHC
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDK  242 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~  242 (359)
                      -+|+|+|+|.||..++..+.+.
T Consensus         3 i~V~IiG~G~VG~~~~~~L~~~   24 (341)
T PRK06270          3 MKIALIGFGGVGQGVAELLAEK   24 (341)
T ss_pred             EEEEEECCCHHHHHHHHHHHHh
Confidence            4899999999999999998765

>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB

Probab=94.49  E-value=0.078  Score=48.75  Aligned_cols=35  Identities=20%  Similarity=0.255  Sum_probs=31.2

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCC-eeEEecCCHHH
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGY-NTIVKDSFEKG  255 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~-~V~l~d~~~~~  255 (359)
                      .+|.|+|+|-+|+.++..|++.|. +++++|.+.-.
T Consensus        25 ~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ve   60 (240)
T TIGR02355        25 SRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTVS   60 (240)
T ss_pred             CcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCccc
Confidence            689999999999999999999997 78998877543

This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).

>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=94.47  E-value=0.04  Score=54.03  Aligned_cols=33  Identities=30%  Similarity=0.409  Sum_probs=31.0

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCCeeEEecCCH
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFE  253 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~  253 (359)
                      .+|.|||+|..|.+.|..|++.|++|+++|..+
T Consensus         4 ~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~   36 (384)
T PRK08849          4 YDIAVVGGGMVGAATALGFAKQGRSVAVIEGGE   36 (384)
T ss_pred             ccEEEECcCHHHHHHHHHHHhCCCcEEEEcCCC
Confidence            579999999999999999999999999999764

>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP

Probab=94.45  E-value=0.044  Score=45.45  Aligned_cols=33  Identities=27%  Similarity=0.370  Sum_probs=29.8

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCC-eeEEecCCH
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGY-NTIVKDSFE  253 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~-~V~l~d~~~  253 (359)
                      .+|.|+|+|.+|+.++..|++.|. +++++|.+.
T Consensus         3 ~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~   36 (135)
T PF00899_consen    3 KRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDI   36 (135)
T ss_dssp             -EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSB
T ss_pred             CEEEEECcCHHHHHHHHHHHHhCCCceeecCCcc
Confidence            589999999999999999999998 799998764

Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....

>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=94.43  E-value=0.68  Score=41.79  Aligned_cols=40  Identities=33%  Similarity=0.386  Sum_probs=35.5

Q ss_pred             cEEEEECC-CcchHHHHHHHHHCCCeeEEecCCHHHHHHHH
Q psy9056         221 KTVAVLGA-GLMGAGIAHVTVDKGYNTIVKDSFEKGLARGL  260 (359)
Q Consensus       221 ~kI~IIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~  260 (359)
                      ++|.|+|+ |.+|..++..+++.|++|++.+++++..+...
T Consensus         6 ~~vlItGasg~iG~~l~~~l~~~G~~V~~~~r~~~~~~~~~   46 (251)
T PRK07231          6 KVAIVTGASSGIGEGIARRFAAEGARVVVTDRNEEAAERVA   46 (251)
T ss_pred             cEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence            68999996 99999999999999999999999987765543

>PRK07326 short chain dehydrogenase; Provisional

Probab=94.42  E-value=0.79  Score=41.06  Aligned_cols=41  Identities=22%  Similarity=0.343  Sum_probs=35.8

Q ss_pred             cEEEEECC-CcchHHHHHHHHHCCCeeEEecCCHHHHHHHHH
Q psy9056         221 KTVAVLGA-GLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLG  261 (359)
Q Consensus       221 ~kI~IIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~  261 (359)
                      ++|.|+|+ |.+|..++..|++.|++|++++++++.++...+
T Consensus         7 ~~ilItGatg~iG~~la~~l~~~g~~V~~~~r~~~~~~~~~~   48 (237)
T PRK07326          7 KVALITGGSKGIGFAIAEALLAEGYKVAITARDQKELEEAAA   48 (237)
T ss_pred             CEEEEECCCCcHHHHHHHHHHHCCCEEEEeeCCHHHHHHHHH
Confidence            67999986 999999999999999999999999877665443

>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.42  E-value=0.18  Score=51.23  Aligned_cols=35  Identities=26%  Similarity=0.284  Sum_probs=32.2

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHH
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKG  255 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~  255 (359)
                      ++|.|+|.|..|.+.+..+...|++|+++|.+++.
T Consensus        13 ~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~~~~   47 (488)
T PRK03369         13 APVLVAGAGVTGRAVLAALTRFGARPTVCDDDPDA   47 (488)
T ss_pred             CeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCCHHH
Confidence            68999999999999999999999999999977654

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=94.41  E-value=0.27  Score=47.74  Aligned_cols=40  Identities=30%  Similarity=0.243  Sum_probs=35.5

Q ss_pred             EEEEECCCcchHHHHHHHHHCCC-eeEEecCCHHHHHHHHH
Q psy9056         222 TVAVLGAGLMGAGIAHVTVDKGY-NTIVKDSFEKGLARGLG  261 (359)
Q Consensus       222 kI~IIG~G~mG~~iA~~l~~~G~-~V~l~d~~~~~l~~~~~  261 (359)
                      +|.|+|+|.+|.-.+..+...|. +|++.|+++++++.+++
T Consensus       171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~  211 (350)
T COG1063         171 TVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKE  211 (350)
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHH
Confidence            89999999999999888888885 78888999999888765

>PRK11259 solA N-methyltryptophan oxidase; Provisional

Probab=94.39  E-value=0.042  Score=53.37  Aligned_cols=33  Identities=27%  Similarity=0.410  Sum_probs=30.6

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCCeeEEecCCH
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFE  253 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~  253 (359)
                      -.|.|||+|.+|.++|..|++.|++|+++|++.
T Consensus         4 ~dv~IIGgGi~G~s~A~~L~~~g~~V~lie~~~   36 (376)
T PRK11259          4 YDVIVIGLGSMGSAAGYYLARRGLRVLGLDRFM   36 (376)
T ss_pred             ccEEEECCCHHHHHHHHHHHHCCCeEEEEeccc
Confidence            359999999999999999999999999999864

>PRK07890 short chain dehydrogenase; Provisional

Probab=94.38  E-value=0.1  Score=47.61  Aligned_cols=43  Identities=21%  Similarity=0.250  Sum_probs=36.8

Q ss_pred             cEEEEECC-CcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHH
Q psy9056         221 KTVAVLGA-GLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQI  263 (359)
Q Consensus       221 ~kI~IIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~  263 (359)
                      ++|-|.|+ |.+|..++..+++.|++|++.+++++..+.....+
T Consensus         6 k~vlItGa~~~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~   49 (258)
T PRK07890          6 KVVVVSGVGPGLGRTLAVRAARAGADVVLAARTAERLDEVAAEI   49 (258)
T ss_pred             CEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHH
Confidence            67889986 99999999999999999999999988766654433

>PRK07832 short chain dehydrogenase; Provisional

Probab=94.35  E-value=0.63  Score=42.96  Aligned_cols=40  Identities=28%  Similarity=0.312  Sum_probs=34.3

Q ss_pred             cEEEEECC-CcchHHHHHHHHHCCCeeEEecCCHHHHHHHH
Q psy9056         221 KTVAVLGA-GLMGAGIAHVTVDKGYNTIVKDSFEKGLARGL  260 (359)
Q Consensus       221 ~kI~IIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~  260 (359)
                      +++.|.|+ |.+|..++..+++.|++|++++++++.++...
T Consensus         1 k~vlItGas~giG~~la~~la~~G~~vv~~~r~~~~~~~~~   41 (272)
T PRK07832          1 KRCFVTGAASGIGRATALRLAAQGAELFLTDRDADGLAQTV   41 (272)
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence            36888886 99999999999999999999999987765543

>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form

Probab=94.34  E-value=0.11  Score=49.55  Aligned_cols=81  Identities=14%  Similarity=0.161  Sum_probs=50.9

Q ss_pred             cEEEEECC-CcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcCCCCC
Q psy9056         221 KTVAVLGA-GLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPFKN  299 (359)
Q Consensus       221 ~kI~IIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~  299 (359)
                      .||+|+|+ |+.|.-+.+.|.++- +|-+.....+..                               +...+..+.+++
T Consensus         2 ~~v~IvGasGy~G~el~rlL~~HP-~~el~~l~s~~~-------------------------------~~~~~~~~~~~~   49 (310)
T TIGR01851         2 PKVFIDGEAGTTGLQIRERLSGRD-DIELLSIAPDRR-------------------------------KDAAERAKLLNA   49 (310)
T ss_pred             CeEEEECCCChhHHHHHHHHhCCC-CeEEEEEecccc-------------------------------cCcCCHhHhhcC
Confidence            48999997 999999999999874 343433332210                               000001123578


Q ss_pred             ccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCC
Q psy9056         300 ADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAI  338 (359)
Q Consensus       300 aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~  338 (359)
                      +|+||.|+|....  ..+...+.   ..++.|++.++..
T Consensus        50 ~D~vFlalp~~~s--~~~~~~~~---~~g~~VIDlSadf   83 (310)
T TIGR01851        50 ADVAILCLPDDAA--REAVSLVD---NPNTCIIDASTAY   83 (310)
T ss_pred             CCEEEECCCHHHH--HHHHHHHH---hCCCEEEECChHH
Confidence            9999999986653  34444442   3578888887644

This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment.

>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]

Probab=94.34  E-value=0.048  Score=53.08  Aligned_cols=36  Identities=22%  Similarity=0.366  Sum_probs=32.5

Q ss_pred             CccEEEEECCCcchHHHHHHHHHCCCeeEEecCCHH
Q psy9056         219 PVKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEK  254 (359)
Q Consensus       219 ~~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~  254 (359)
                      ...+|.|||+|.+|.+.|..|++.|++|+++|.+.-
T Consensus         3 ~~~~vvVIGgGi~Gls~A~~La~~G~~V~vie~~~~   38 (387)
T COG0665           3 MKMDVVIIGGGIVGLSAAYYLAERGADVTVLEAGEA   38 (387)
T ss_pred             CcceEEEECCcHHHHHHHHHHHHcCCEEEEEecCcc
Confidence            346899999999999999999999999999997763

>PRK06138 short chain dehydrogenase; Provisional

Probab=94.32  E-value=0.89  Score=41.11  Aligned_cols=39  Identities=23%  Similarity=0.290  Sum_probs=34.4

Q ss_pred             cEEEEECC-CcchHHHHHHHHHCCCeeEEecCCHHHHHHH
Q psy9056         221 KTVAVLGA-GLMGAGIAHVTVDKGYNTIVKDSFEKGLARG  259 (359)
Q Consensus       221 ~kI~IIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~  259 (359)
                      ++|.|.|+ |.+|..++..|++.|++|++.+++.+..+..
T Consensus         6 k~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~   45 (252)
T PRK06138          6 RVAIVTGAGSGIGRATAKLFAREGARVVVADRDAEAAERV   45 (252)
T ss_pred             cEEEEeCCCchHHHHHHHHHHHCCCeEEEecCCHHHHHHH
Confidence            68999997 9999999999999999999999998765543

>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=94.31  E-value=0.24  Score=44.58  Aligned_cols=41  Identities=24%  Similarity=0.340  Sum_probs=35.9

Q ss_pred             cEEEEECC-CcchHHHHHHHHHCCCeeEEecCCHHHHHHHHH
Q psy9056         221 KTVAVLGA-GLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLG  261 (359)
Q Consensus       221 ~kI~IIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~  261 (359)
                      ++|.|.|+ |.+|..++..+++.|++|++.+++++.++....
T Consensus         6 ~~vlItGa~g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~   47 (238)
T PRK05786          6 KKVAIIGVSEGLGYAVAYFALKEGAQVCINSRNENKLKRMKK   47 (238)
T ss_pred             cEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence            68999997 889999999999999999999999887665433

>PRK05866 short chain dehydrogenase; Provisional

Probab=94.30  E-value=0.65  Score=43.68  Aligned_cols=41  Identities=20%  Similarity=0.180  Sum_probs=36.1

Q ss_pred             cEEEEECC-CcchHHHHHHHHHCCCeeEEecCCHHHHHHHHH
Q psy9056         221 KTVAVLGA-GLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLG  261 (359)
Q Consensus       221 ~kI~IIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~  261 (359)
                      ++|.|.|+ |.+|..++..|++.|++|++.+++++.++...+
T Consensus        41 k~vlItGasggIG~~la~~La~~G~~Vi~~~R~~~~l~~~~~   82 (293)
T PRK05866         41 KRILLTGASSGIGEAAAEQFARRGATVVAVARREDLLDAVAD   82 (293)
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence            67899996 999999999999999999999999887765543

>PRK07454 short chain dehydrogenase; Provisional

Probab=94.30  E-value=0.77  Score=41.37  Aligned_cols=42  Identities=14%  Similarity=0.178  Sum_probs=36.4

Q ss_pred             CccEEEEECC-CcchHHHHHHHHHCCCeeEEecCCHHHHHHHH
Q psy9056         219 PVKTVAVLGA-GLMGAGIAHVTVDKGYNTIVKDSFEKGLARGL  260 (359)
Q Consensus       219 ~~~kI~IIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~  260 (359)
                      +++++.|.|+ |.+|..++..++++|++|++.+++++..+...
T Consensus         5 ~~k~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~   47 (241)
T PRK07454          5 SMPRALITGASSGIGKATALAFAKAGWDLALVARSQDALEALA   47 (241)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence            4678999996 99999999999999999999999987655543

>TIGR01377 soxA_mon sarcosine oxidase, monomeric form

Probab=94.29  E-value=0.04  Score=53.58  Aligned_cols=31  Identities=35%  Similarity=0.537  Sum_probs=29.3

Q ss_pred             EEEEECCCcchHHHHHHHHHCCCeeEEecCC
Q psy9056         222 TVAVLGAGLMGAGIAHVTVDKGYNTIVKDSF  252 (359)
Q Consensus       222 kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~  252 (359)
                      .|.|||+|.+|.++|..|++.|++|+++|..
T Consensus         2 dvvIIGaGi~G~s~A~~La~~g~~V~l~e~~   32 (380)
T TIGR01377         2 DVIVVGAGIMGCFAAYHLAKHGKKTLLLEQF   32 (380)
T ss_pred             cEEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence            4899999999999999999999999999985

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>PRK07523 gluconate 5-dehydrogenase; Provisional

Probab=94.27  E-value=0.66  Score=42.27  Aligned_cols=41  Identities=20%  Similarity=0.200  Sum_probs=35.7

Q ss_pred             cEEEEECC-CcchHHHHHHHHHCCCeeEEecCCHHHHHHHHH
Q psy9056         221 KTVAVLGA-GLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLG  261 (359)
Q Consensus       221 ~kI~IIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~  261 (359)
                      ++|.|.|+ |.+|..++..|++.|++|++.+++++.++....
T Consensus        11 k~vlItGa~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~   52 (255)
T PRK07523         11 RRALVTGSSQGIGYALAEGLAQAGAEVILNGRDPAKLAAAAE   52 (255)
T ss_pred             CEEEEECCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH
Confidence            68999996 999999999999999999999999877655433

>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional

Probab=94.27  E-value=0.24  Score=51.10  Aligned_cols=42  Identities=14%  Similarity=0.133  Sum_probs=36.3

Q ss_pred             cEEEEECC-CcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHH
Q psy9056         221 KTVAVLGA-GLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQ  262 (359)
Q Consensus       221 ~kI~IIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~  262 (359)
                      +.|.|.|+ |.+|..++..|++.|++|++++|+.++++.....
T Consensus        81 KvVLVTGATGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~~  123 (576)
T PLN03209         81 DLAFVAGATGKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQS  123 (576)
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHH
Confidence            56889997 9999999999999999999999999887665443

>COG0740 ClpP Protease subunit of ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]

Probab=94.23  E-value=0.055  Score=47.99  Aligned_cols=74  Identities=20%  Similarity=0.276  Sum_probs=44.0

Q ss_pred             CCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHh----------------------HHhhhcChH--HHHH
Q psy9056           2 FAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQ----------------------RLPKLTALP--NVLD   57 (359)
Q Consensus         2 ~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~----------------------~l~~~~g~~--~a~~   57 (359)
                      .|...|..|++++|..       -+|++|..++=|+++.|+..                      .+...-|..  .-..
T Consensus        95 ~AaSmgs~l~~aG~~g-------~r~~lPnsrimIHqP~gg~~G~a~Di~i~A~ei~~~~~~l~~i~a~~TGq~~e~i~~  167 (200)
T COG0740          95 QAASMGSVLLMAGDKG-------KRFALPNARIMIHQPSGGAQGQASDIEIHAREILKIKERLNRIYAEHTGQTLEKIEK  167 (200)
T ss_pred             HHHhHHHHHHhcCCCC-------CceeCCCceEEEecCCccCccCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHH
Confidence            3445567777777764       45666666666666655432                      111222221  1112


Q ss_pred             HHhcCCCCCHHHHHHcCCcceecCC
Q psy9056          58 MTLTGKTLKADKAKKMGIVDQLVEP   82 (359)
Q Consensus        58 ~~ltg~~~~a~eA~~~Glv~~~~~~   82 (359)
                      .+-....++|+||+++||+|++...
T Consensus       168 d~drd~~msa~eA~~yGLiD~V~~~  192 (200)
T COG0740         168 DTDRDTWMSAEEAKEYGLIDKVIES  192 (200)
T ss_pred             hhcccccCCHHHHHHcCCcceeccc
Confidence            2223456999999999999999986

>PRK07814 short chain dehydrogenase; Provisional

Probab=94.23  E-value=0.75  Score=42.23  Aligned_cols=43  Identities=23%  Similarity=0.248  Sum_probs=36.3

Q ss_pred             CccEEEEECC-CcchHHHHHHHHHCCCeeEEecCCHHHHHHHHH
Q psy9056         219 PVKTVAVLGA-GLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLG  261 (359)
Q Consensus       219 ~~~kI~IIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~  261 (359)
                      +-++|-|.|+ |.+|..++..|++.|++|++++++++.++....
T Consensus         9 ~~~~vlItGasggIG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~   52 (263)
T PRK07814          9 DDQVAVVTGAGRGLGAAIALAFAEAGADVLIAARTESQLDEVAE   52 (263)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence            3468999996 789999999999999999999999877665443

>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.22  E-value=0.22  Score=49.88  Aligned_cols=35  Identities=31%  Similarity=0.258  Sum_probs=32.0

Q ss_pred             ccEEEEECCCcchHHHHHHHHHCCCeeEEecCCHH
Q psy9056         220 VKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEK  254 (359)
Q Consensus       220 ~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~  254 (359)
                      -++|.|+|.|.+|.++|..|++.|++|+++|.+..
T Consensus         5 ~k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~~   39 (447)
T PRK02472          5 NKKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKPF   39 (447)
T ss_pred             CCEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCCc
Confidence            36899999999999999999999999999998754

>KOG0068|consensus

Probab=94.21  E-value=0.12  Score=49.30  Aligned_cols=94  Identities=19%  Similarity=0.132  Sum_probs=66.1

Q ss_pred             CCccEEEEECCCcchHHHHHHHHHCCCeeEEecCCHH-HHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcCC
Q psy9056         218 TPVKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEK-GLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDP  296 (359)
Q Consensus       218 ~~~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~-~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  296 (359)
                      -.=|+++|+|.|.+|+-+|.++-.-|-.|+.||.=.. ...++                          -.++..+-.+.
T Consensus       144 l~GKTLgvlG~GrIGseVA~r~k~~gm~vI~~dpi~~~~~~~a--------------------------~gvq~vsl~Ei  197 (406)
T KOG0068|consen  144 LRGKTLGVLGLGRIGSEVAVRAKAMGMHVIGYDPITPMALAEA--------------------------FGVQLVSLEEI  197 (406)
T ss_pred             EeccEEEEeecccchHHHHHHHHhcCceEEeecCCCchHHHHh--------------------------ccceeeeHHHH
Confidence            3347899999999999999999999999999975432 21111                          01333333367


Q ss_pred             CCCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCC
Q psy9056         297 FKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSA  337 (359)
Q Consensus       297 l~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~  337 (359)
                      +..||+|-.-+|-.++..+-+-.+.-..++.+.-|+..+-|
T Consensus       198 l~~ADFitlH~PLtP~T~~lin~~tfA~mKkGVriIN~aRG  238 (406)
T KOG0068|consen  198 LPKADFITLHVPLTPSTEKLLNDETFAKMKKGVRIINVARG  238 (406)
T ss_pred             HhhcCEEEEccCCCcchhhccCHHHHHHhhCCcEEEEecCC
Confidence            89999999988877776555555555567888877655544

>PRK06475 salicylate hydroxylase; Provisional

Probab=94.20  E-value=0.039  Score=54.36  Aligned_cols=34  Identities=18%  Similarity=0.345  Sum_probs=32.1

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCCeeEEecCCHH
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEK  254 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~  254 (359)
                      ++|.|||+|.-|.+.|..|+++|++|.++++.++
T Consensus         3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~   36 (400)
T PRK06475          3 GSPLIAGAGVAGLSAALELAARGWAVTIIEKAQE   36 (400)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Confidence            6899999999999999999999999999998864

>PRK08223 hypothetical protein; Validated

Probab=94.20  E-value=0.063  Score=50.55  Aligned_cols=34  Identities=21%  Similarity=0.093  Sum_probs=30.9

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCC-eeEEecCCHH
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGY-NTIVKDSFEK  254 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~-~V~l~d~~~~  254 (359)
                      .+|.|||+|-+|+.++..|+..|. +++++|.|.-
T Consensus        28 s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~V   62 (287)
T PRK08223         28 SRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDVF   62 (287)
T ss_pred             CCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCCc
Confidence            689999999999999999999998 7999987753

>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]

Probab=94.14  E-value=0.049  Score=53.49  Aligned_cols=34  Identities=24%  Similarity=0.372  Sum_probs=31.8

Q ss_pred             ccEEEEECCCcchHHHHHHHHHCCCeeEEecCCH
Q psy9056         220 VKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFE  253 (359)
Q Consensus       220 ~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~  253 (359)
                      ...|.|||+|..|..+|..|+++|++|.++|+++
T Consensus         2 ~~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~~   35 (387)
T COG0654           2 MLDVAIVGAGPAGLALALALARAGLDVTLLERAP   35 (387)
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCcEEEEccCc
Confidence            3579999999999999999999999999999983

>PRK06196 oxidoreductase; Provisional

Probab=94.12  E-value=0.18  Score=47.85  Aligned_cols=44  Identities=20%  Similarity=0.174  Sum_probs=37.5

Q ss_pred             CccEEEEECC-CcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHH
Q psy9056         219 PVKTVAVLGA-GLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQ  262 (359)
Q Consensus       219 ~~~kI~IIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~  262 (359)
                      +-++|.|.|+ |.+|..++..|++.|++|++.++++++.++....
T Consensus        25 ~~k~vlITGasggIG~~~a~~L~~~G~~Vv~~~R~~~~~~~~~~~   69 (315)
T PRK06196         25 SGKTAIVTGGYSGLGLETTRALAQAGAHVIVPARRPDVAREALAG   69 (315)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH
Confidence            3368999997 8999999999999999999999998877665443

>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E

Probab=94.11  E-value=0.21  Score=45.64  Aligned_cols=33  Identities=27%  Similarity=0.239  Sum_probs=30.5

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCC-eeEEecCCH
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGY-NTIVKDSFE  253 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~-~V~l~d~~~  253 (359)
                      .+|.|+|+|.+|+.++..|++.|. +++++|.+.
T Consensus        12 ~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~   45 (231)
T cd00755          12 AHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDV   45 (231)
T ss_pred             CCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCE
Confidence            589999999999999999999998 899999775

coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively

Probab=94.10  E-value=0.052  Score=51.32  Aligned_cols=32  Identities=28%  Similarity=0.388  Sum_probs=28.4

Q ss_pred             EEEEECCCcchHHHHHHHHHCCC-eeEEecCCH
Q psy9056         222 TVAVLGAGLMGAGIAHVTVDKGY-NTIVKDSFE  253 (359)
Q Consensus       222 kI~IIG~G~mG~~iA~~l~~~G~-~V~l~d~~~  253 (359)
                      ||.|||+|.+|+.+|..|+..|. +++++|.+.
T Consensus         1 kVLIvGaGGLGs~vA~~La~aGVg~ItlvD~D~   33 (307)
T cd01486           1 KCLLLGAGTLGCNVARNLLGWGVRHITFVDSGK   33 (307)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCCeEEEECCCE
Confidence            68999999999999999999997 688887653

This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.

>COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism]

Probab=94.09  E-value=0.17  Score=48.49  Aligned_cols=100  Identities=15%  Similarity=0.231  Sum_probs=58.1

Q ss_pred             ccEEEEECC-CcchHHHHHHHHHCC-CeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhccccccc-CcC-
Q psy9056         220 VKTVAVLGA-GLMGAGIAHVTVDKG-YNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTL-SYD-  295 (359)
Q Consensus       220 ~~kI~IIG~-G~mG~~iA~~l~~~G-~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~-~~~-  295 (359)
                      |.||+|+|+ |+-|.-+.+.|+.+- .+|.++..+..+ .+..   ........  |         .. .+.+.. +.+ 
T Consensus         2 ~~kV~IvGasGYtG~EL~rlL~~Hp~ve~~~~ss~~~~-g~~~---~~~~p~l~--g---------~~-~l~~~~~~~~~   65 (349)
T COG0002           2 MIKVGIVGASGYTGLELLRLLAGHPDVELILISSRERA-GKPV---SDVHPNLR--G---------LV-DLPFQTIDPEK   65 (349)
T ss_pred             CceEEEEcCCCCcHHHHHHHHhcCCCeEEEEeechhhc-CCch---HHhCcccc--c---------cc-ccccccCChhh
Confidence            579999997 999999999998884 477777654421 1111   11000000  0         00 022211 112 


Q ss_pred             -CCCCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCcH
Q psy9056         296 -PFKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPI  340 (359)
Q Consensus       296 -~l~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~  340 (359)
                       ...+||+||.|+|.....  ++..++.+   .++.|++.|....+
T Consensus        66 ~~~~~~DvvFlalPhg~s~--~~v~~l~~---~g~~VIDLSadfR~  106 (349)
T COG0002          66 IELDECDVVFLALPHGVSA--ELVPELLE---AGCKVIDLSADFRL  106 (349)
T ss_pred             hhcccCCEEEEecCchhHH--HHHHHHHh---CCCeEEECCccccc
Confidence             346699999999987743  55555543   35557777766554

>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=94.08  E-value=0.052  Score=53.08  Aligned_cols=35  Identities=23%  Similarity=0.398  Sum_probs=31.7

Q ss_pred             CCccEEEEECCCcchHHHHHHHHHC---CCeeEEecCC
Q psy9056         218 TPVKTVAVLGAGLMGAGIAHVTVDK---GYNTIVKDSF  252 (359)
Q Consensus       218 ~~~~kI~IIG~G~mG~~iA~~l~~~---G~~V~l~d~~  252 (359)
                      |+..+|.|||+|..|.++|..|+++   |++|+++|+.
T Consensus         1 m~~~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~   38 (395)
T PRK05732          1 MSRMDVIIVGGGMAGATLALALSRLSHGGLPVALIEAF   38 (395)
T ss_pred             CCcCCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCC
Confidence            3456799999999999999999998   9999999994

>PRK08643 acetoin reductase; Validated

Probab=94.06  E-value=0.98  Score=41.09  Aligned_cols=41  Identities=27%  Similarity=0.321  Sum_probs=34.9

Q ss_pred             cEEEEECC-CcchHHHHHHHHHCCCeeEEecCCHHHHHHHHH
Q psy9056         221 KTVAVLGA-GLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLG  261 (359)
Q Consensus       221 ~kI~IIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~  261 (359)
                      +++.|+|+ |.+|..++..+++.|++|++.+++++.++....
T Consensus         3 k~~lItGas~giG~~la~~l~~~G~~v~~~~r~~~~~~~~~~   44 (256)
T PRK08643          3 KVALVTGAGQGIGFAIAKRLVEDGFKVAIVDYNEETAQAAAD   44 (256)
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence            46778886 999999999999999999999999887665544

>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=94.05  E-value=0.048  Score=53.23  Aligned_cols=33  Identities=30%  Similarity=0.386  Sum_probs=30.8

Q ss_pred             ccEEEEECCCcchHHHHHHHHHCCCeeEEecCC
Q psy9056         220 VKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSF  252 (359)
Q Consensus       220 ~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~  252 (359)
                      |.+|.|||+|..|.++|..|++.|++|+++|+.
T Consensus         1 ~~dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~~   33 (374)
T PRK06617          1 MSNTVILGCGLSGMLTALSFAQKGIKTTIFESK   33 (374)
T ss_pred             CccEEEECCCHHHHHHHHHHHcCCCeEEEecCC
Confidence            457999999999999999999999999999976

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=94.04  E-value=0.36  Score=37.92  Aligned_cols=97  Identities=16%  Similarity=0.112  Sum_probs=61.8

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhccccc-ccCc----C
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVG-TLSY----D  295 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~-~~~~----~  295 (359)
                      .+|--||+|.=..++...-...|.+|+.+|.+++.++.+.+....       .+         ..+++++ ..|.    +
T Consensus         3 ~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~-------~~---------~~~~i~~~~~d~~~~~~   66 (112)
T PF12847_consen    3 GRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAE-------EG---------LSDRITFVQGDAEFDPD   66 (112)
T ss_dssp             CEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHH-------TT---------TTTTEEEEESCCHGGTT
T ss_pred             CEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHh-------cC---------CCCCeEEEECccccCcc
Confidence            578889998833333222224899999999999998887765411       00         0123332 1222    3


Q ss_pred             CCCCccEEEEcc-----cCCHHHHHHHHHHHHHhCCCCcEEEE
Q psy9056         296 PFKNADMVIEAV-----FEDINIKHQVIKEIEAVVPPHCVVAT  333 (359)
Q Consensus       296 ~l~~aD~Vi~av-----p~~~~~k~~v~~~l~~~~~~~~ii~s  333 (359)
                      .....|+|+...     .-+....+.+++.+.+.++|+.+++.
T Consensus        67 ~~~~~D~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi  109 (112)
T PF12847_consen   67 FLEPFDLVICSGFTLHFLLPLDERRRVLERIRRLLKPGGRLVI  109 (112)
T ss_dssp             TSSCEEEEEECSGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred             cCCCCCEEEECCCccccccchhHHHHHHHHHHHhcCCCcEEEE
Confidence            456789999866     22224567888999999988886654

...

>PRK07588 hypothetical protein; Provisional

Probab=94.03  E-value=0.048  Score=53.45  Aligned_cols=34  Identities=24%  Similarity=0.287  Sum_probs=31.5

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCCeeEEecCCHH
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEK  254 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~  254 (359)
                      .+|.|||+|..|.++|..|++.|++|+++++.++
T Consensus         1 ~~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~~   34 (391)
T PRK07588          1 MKVAISGAGIAGPTLAYWLRRYGHEPTLIERAPE   34 (391)
T ss_pred             CeEEEECccHHHHHHHHHHHHCCCceEEEeCCCC
Confidence            3799999999999999999999999999998764

>PRK09072 short chain dehydrogenase; Provisional

Probab=94.03  E-value=0.81  Score=41.93  Aligned_cols=40  Identities=23%  Similarity=0.261  Sum_probs=35.1

Q ss_pred             cEEEEECC-CcchHHHHHHHHHCCCeeEEecCCHHHHHHHH
Q psy9056         221 KTVAVLGA-GLMGAGIAHVTVDKGYNTIVKDSFEKGLARGL  260 (359)
Q Consensus       221 ~kI~IIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~  260 (359)
                      ++|.|.|+ |.+|..++..+++.|++|++.+++++.++...
T Consensus         6 ~~vlItG~s~~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~   46 (263)
T PRK09072          6 KRVLLTGASGGIGQALAEALAAAGARLLLVGRNAEKLEALA   46 (263)
T ss_pred             CEEEEECCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence            67999995 99999999999999999999999988766543

>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=94.03  E-value=0.11  Score=48.59  Aligned_cols=93  Identities=24%  Similarity=0.221  Sum_probs=63.7

Q ss_pred             ChhhHHHHHhHhhhhhhhhcCCCCCCCCccEEEEECCC-cchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHH
Q psy9056         192 TPQSKGLMGLFRAQTECKKNRLGKPQTPVKTVAVLGAG-LMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGA  270 (359)
Q Consensus       192 s~~~~~~~~af~~k~~~~~~~~~~~~~~~~kI~IIG~G-~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~  270 (359)
                      -|-+..++-.++++..-   +     -.=++|.|||-+ .+|.++|..|.+.|..|++.......++             
T Consensus       137 ~PcTp~avi~lL~~~~i---~-----l~Gk~vvViGrS~~VG~Pla~lL~~~~AtVti~hs~T~~l~-------------  195 (281)
T PRK14183        137 VPCTPLGVMELLEEYEI---D-----VKGKDVCVVGASNIVGKPMAALLLNANATVDICHIFTKDLK-------------  195 (281)
T ss_pred             CCCcHHHHHHHHHHcCC---C-----CCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCCcCHH-------------
Confidence            35566777777766642   1     222699999976 9999999999999999998863321111             


Q ss_pred             HhhccCChHHHHhhhcccccccCcCCCCCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCC
Q psy9056         271 VKRKKMSALDRDRYLASLVGTLSYDPFKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTS  336 (359)
Q Consensus       271 ~~~~~~~~~~~~~~~~~i~~~~~~~~l~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts  336 (359)
                                              +.++.||+||.|+.-..     ++.  .++++++++|++...
T Consensus       196 ------------------------~~~~~ADIvV~AvGkp~-----~i~--~~~vk~gavvIDvGi  230 (281)
T PRK14183        196 ------------------------AHTKKADIVIVGVGKPN-----LIT--EDMVKEGAIVIDIGI  230 (281)
T ss_pred             ------------------------HHHhhCCEEEEecCccc-----ccC--HHHcCCCcEEEEeec
Confidence                                    23688999999996322     222  345678898876553

>PRK06949 short chain dehydrogenase; Provisional

Probab=94.02  E-value=0.98  Score=41.05  Aligned_cols=44  Identities=23%  Similarity=0.193  Sum_probs=37.6

Q ss_pred             CCccEEEEECC-CcchHHHHHHHHHCCCeeEEecCCHHHHHHHHH
Q psy9056         218 TPVKTVAVLGA-GLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLG  261 (359)
Q Consensus       218 ~~~~kI~IIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~  261 (359)
                      +.-++|.|.|+ |.+|..++..+++.|++|++.++++++++....
T Consensus         7 ~~~k~ilItGasg~IG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~   51 (258)
T PRK06949          7 LEGKVALVTGASSGLGARFAQVLAQAGAKVVLASRRVERLKELRA   51 (258)
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence            33478999996 999999999999999999999999987665543

>PRK08340 glucose-1-dehydrogenase; Provisional

Probab=93.98  E-value=0.8  Score=41.91  Aligned_cols=42  Identities=21%  Similarity=0.355  Sum_probs=36.0

Q ss_pred             EEEEECC-CcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHH
Q psy9056         222 TVAVLGA-GLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQI  263 (359)
Q Consensus       222 kI~IIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~  263 (359)
                      +|-|.|+ |.+|.+++..|++.|++|++.+++++.+++..+.+
T Consensus         2 ~vlItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l   44 (259)
T PRK08340          2 NVLVTASSRGIGFNVARELLKKGARVVISSRNEENLEKALKEL   44 (259)
T ss_pred             eEEEEcCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHH
Confidence            6888886 88999999999999999999999988776655443

>PRK08013 oxidoreductase; Provisional

Probab=93.97  E-value=0.049  Score=53.68  Aligned_cols=34  Identities=21%  Similarity=0.302  Sum_probs=31.9

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCCeeEEecCCHH
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEK  254 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~  254 (359)
                      ..|.|||+|..|.++|..|+++|++|+++|+.+.
T Consensus         4 ~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~   37 (400)
T PRK08013          4 VDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVP   37 (400)
T ss_pred             CCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCC
Confidence            4799999999999999999999999999998875

>PRK07102 short chain dehydrogenase; Provisional

Probab=93.93  E-value=0.13  Score=46.50  Aligned_cols=42  Identities=17%  Similarity=0.153  Sum_probs=36.5

Q ss_pred             ccEEEEECC-CcchHHHHHHHHHCCCeeEEecCCHHHHHHHHH
Q psy9056         220 VKTVAVLGA-GLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLG  261 (359)
Q Consensus       220 ~~kI~IIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~  261 (359)
                      |++|.|.|+ |.+|..++..++++|++|++.+++++..+....
T Consensus         1 ~~~vlItGas~giG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~   43 (243)
T PRK07102          1 MKKILIIGATSDIARACARRYAAAGARLYLAARDVERLERLAD   43 (243)
T ss_pred             CcEEEEEcCCcHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHH
Confidence            468899995 999999999999999999999999987665444

>PRK06197 short chain dehydrogenase; Provisional

Probab=93.92  E-value=0.85  Score=42.97  Aligned_cols=46  Identities=17%  Similarity=0.134  Sum_probs=38.1

Q ss_pred             CCCCccEEEEECC-CcchHHHHHHHHHCCCeeEEecCCHHHHHHHHH
Q psy9056         216 PQTPVKTVAVLGA-GLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLG  261 (359)
Q Consensus       216 ~~~~~~kI~IIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~  261 (359)
                      ++.+-++|-|.|+ |.+|..++..|++.|++|++.+++.+..+...+
T Consensus        12 ~~~~~k~vlItGas~gIG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~   58 (306)
T PRK06197         12 PDQSGRVAVVTGANTGLGYETAAALAAKGAHVVLAVRNLDKGKAAAA   58 (306)
T ss_pred             ccCCCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence            4445578889986 999999999999999999999999887665443

>PRK14982 acyl-ACP reductase; Provisional

Probab=93.91  E-value=0.09  Score=50.77  Aligned_cols=41  Identities=27%  Similarity=0.310  Sum_probs=34.5

Q ss_pred             ccEEEEECC-CcchHHHHHHHHHC-C-CeeEEecCCHHHHHHHH
Q psy9056         220 VKTVAVLGA-GLMGAGIAHVTVDK-G-YNTIVKDSFEKGLARGL  260 (359)
Q Consensus       220 ~~kI~IIG~-G~mG~~iA~~l~~~-G-~~V~l~d~~~~~l~~~~  260 (359)
                      -++|.|+|+ |.||+.++..++.. | .+|++++++.++++...
T Consensus       155 ~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~rl~~La  198 (340)
T PRK14982        155 KATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQERLQELQ  198 (340)
T ss_pred             CCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHHHHHHH
Confidence            378999998 89999999999864 5 58999999988766543

>PRK07109 short chain dehydrogenase; Provisional

Probab=93.91  E-value=0.88  Score=43.77  Aligned_cols=44  Identities=20%  Similarity=0.234  Sum_probs=37.3

Q ss_pred             CCccEEEEECC-CcchHHHHHHHHHCCCeeEEecCCHHHHHHHHH
Q psy9056         218 TPVKTVAVLGA-GLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLG  261 (359)
Q Consensus       218 ~~~~kI~IIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~  261 (359)
                      ++.++|.|.|+ |.+|..++..|++.|++|++++++++.++...+
T Consensus         6 l~~k~vlITGas~gIG~~la~~la~~G~~Vvl~~R~~~~l~~~~~   50 (334)
T PRK07109          6 IGRQVVVITGASAGVGRATARAFARRGAKVVLLARGEEGLEALAA   50 (334)
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence            34468999996 999999999999999999999999887665443

>PRK08267 short chain dehydrogenase; Provisional

Probab=93.91  E-value=0.13  Score=47.16  Aligned_cols=42  Identities=26%  Similarity=0.305  Sum_probs=36.9

Q ss_pred             ccEEEEECC-CcchHHHHHHHHHCCCeeEEecCCHHHHHHHHH
Q psy9056         220 VKTVAVLGA-GLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLG  261 (359)
Q Consensus       220 ~~kI~IIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~  261 (359)
                      |++|-|.|+ |.+|..++..+++.|++|++++++++.++....
T Consensus         1 mk~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~   43 (260)
T PRK08267          1 MKSIFITGAASGIGRATALLFAAEGWRVGAYDINEAGLAALAA   43 (260)
T ss_pred             CcEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHH
Confidence            578999996 999999999999999999999999987766544

>PRK07074 short chain dehydrogenase; Provisional

Probab=93.90  E-value=0.12  Score=47.16  Aligned_cols=41  Identities=27%  Similarity=0.265  Sum_probs=35.8

Q ss_pred             cEEEEECC-CcchHHHHHHHHHCCCeeEEecCCHHHHHHHHH
Q psy9056         221 KTVAVLGA-GLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLG  261 (359)
Q Consensus       221 ~kI~IIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~  261 (359)
                      ++|.|.|+ |.+|..++..|++.|++|++++++++.++....
T Consensus         3 k~ilItGat~~iG~~la~~L~~~g~~v~~~~r~~~~~~~~~~   44 (257)
T PRK07074          3 RTALVTGAAGGIGQALARRFLAAGDRVLALDIDAAALAAFAD   44 (257)
T ss_pred             CEEEEECCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence            57889997 899999999999999999999999887766544

>PLN02985 squalene monooxygenase

Probab=93.86  E-value=0.087  Score=53.95  Aligned_cols=35  Identities=23%  Similarity=0.292  Sum_probs=32.1

Q ss_pred             CccEEEEECCCcchHHHHHHHHHCCCeeEEecCCH
Q psy9056         219 PVKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFE  253 (359)
Q Consensus       219 ~~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~  253 (359)
                      ...+|.|||+|..|.+.|..|+++|++|.++|+++
T Consensus        42 ~~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~   76 (514)
T PLN02985         42 GATDVIIVGAGVGGSALAYALAKDGRRVHVIERDL   76 (514)
T ss_pred             CCceEEEECCCHHHHHHHHHHHHcCCeEEEEECcC
Confidence            34589999999999999999999999999999875

>PRK07831 short chain dehydrogenase; Provisional

Probab=93.85  E-value=1.2  Score=40.74  Aligned_cols=46  Identities=24%  Similarity=0.378  Sum_probs=38.0

Q ss_pred             CCccEEEEECC-C-cchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHH
Q psy9056         218 TPVKTVAVLGA-G-LMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQI  263 (359)
Q Consensus       218 ~~~~kI~IIG~-G-~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~  263 (359)
                      ++-+++.|.|+ | -+|..++..+++.|++|++.++++++++.....+
T Consensus        15 ~~~k~vlItG~sg~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~   62 (262)
T PRK07831         15 LAGKVVLVTAAAGTGIGSATARRALEEGARVVISDIHERRLGETADEL   62 (262)
T ss_pred             cCCCEEEEECCCcccHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHH
Confidence            34478999997 6 5999999999999999999999988776655433

>PRK05867 short chain dehydrogenase; Provisional

Probab=93.84  E-value=0.87  Score=41.45  Aligned_cols=41  Identities=20%  Similarity=0.231  Sum_probs=35.8

Q ss_pred             cEEEEECC-CcchHHHHHHHHHCCCeeEEecCCHHHHHHHHH
Q psy9056         221 KTVAVLGA-GLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLG  261 (359)
Q Consensus       221 ~kI~IIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~  261 (359)
                      +++-|.|+ |.+|..++..|++.|++|++.+++.+.++....
T Consensus        10 k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~   51 (253)
T PRK05867         10 KRALITGASTGIGKRVALAYVEAGAQVAIAARHLDALEKLAD   51 (253)
T ss_pred             CEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHH
Confidence            57888897 899999999999999999999999887666544

>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]

Probab=93.83  E-value=0.38  Score=43.25  Aligned_cols=80  Identities=19%  Similarity=0.209  Sum_probs=51.5

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcCCCCCc
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPFKNA  300 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~a  300 (359)
                      ++|.|||.|.+|..=+..|++.|-+|+++..+.  ..+...        ..+.+.+.         -+.-.-+.+.+.++
T Consensus        13 k~VlvvGgG~va~rKa~~ll~~ga~v~Vvs~~~--~~el~~--------~~~~~~i~---------~~~~~~~~~~~~~~   73 (210)
T COG1648          13 KKVLVVGGGSVALRKARLLLKAGADVTVVSPEF--EPELKA--------LIEEGKIK---------WIEREFDAEDLDDA   73 (210)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCEEEEEcCCc--cHHHHH--------HHHhcCcc---------hhhcccChhhhcCc
Confidence            689999999999999999999999999998776  222221        12222111         01101112446669


Q ss_pred             cEEEEcccCCHHHHHHHHHH
Q psy9056         301 DMVIEAVFEDINIKHQVIKE  320 (359)
Q Consensus       301 D~Vi~avp~~~~~k~~v~~~  320 (359)
                      ++||.|++ |..+-+.+++.
T Consensus        74 ~lviaAt~-d~~ln~~i~~~   92 (210)
T COG1648          74 FLVIAATD-DEELNERIAKA   92 (210)
T ss_pred             eEEEEeCC-CHHHHHHHHHH
Confidence            99999986 44445555544

>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional

Probab=93.80  E-value=1.1  Score=40.69  Aligned_cols=43  Identities=21%  Similarity=0.183  Sum_probs=36.4

Q ss_pred             CccEEEEECC-CcchHHHHHHHHHCCCeeEEecCCHHHHHHHHH
Q psy9056         219 PVKTVAVLGA-GLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLG  261 (359)
Q Consensus       219 ~~~kI~IIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~  261 (359)
                      +-++|-|.|+ |.+|..++..|++.|++|++++++++.++....
T Consensus        11 ~~k~vlItG~~g~iG~~la~~l~~~G~~Vi~~~r~~~~~~~~~~   54 (247)
T PRK08945         11 KDRIILVTGAGDGIGREAALTYARHGATVILLGRTEEKLEAVYD   54 (247)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCcEEEEeCCHHHHHHHHH
Confidence            3468889986 999999999999999999999999877665443

>PRK07825 short chain dehydrogenase; Provisional

Probab=93.78  E-value=0.18  Score=46.64  Aligned_cols=42  Identities=21%  Similarity=0.132  Sum_probs=36.6

Q ss_pred             ccEEEEECC-CcchHHHHHHHHHCCCeeEEecCCHHHHHHHHH
Q psy9056         220 VKTVAVLGA-GLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLG  261 (359)
Q Consensus       220 ~~kI~IIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~  261 (359)
                      -++|-|.|+ |.+|..++..+++.|++|++.+++++.++....
T Consensus         5 ~~~ilVtGasggiG~~la~~l~~~G~~v~~~~r~~~~~~~~~~   47 (273)
T PRK07825          5 GKVVAITGGARGIGLATARALAALGARVAIGDLDEALAKETAA   47 (273)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence            367899997 999999999999999999999999988766543

>PRK08213 gluconate 5-dehydrogenase; Provisional

Probab=93.75  E-value=0.98  Score=41.22  Aligned_cols=42  Identities=21%  Similarity=0.219  Sum_probs=36.1

Q ss_pred             ccEEEEECC-CcchHHHHHHHHHCCCeeEEecCCHHHHHHHHH
Q psy9056         220 VKTVAVLGA-GLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLG  261 (359)
Q Consensus       220 ~~kI~IIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~  261 (359)
                      -++|-|.|+ |.+|..++..|++.|++|++.+++++.++....
T Consensus        12 ~k~ilItGa~g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~   54 (259)
T PRK08213         12 GKTALVTGGSRGLGLQIAEALGEAGARVVLSARKAEELEEAAA   54 (259)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH
Confidence            368999986 999999999999999999999999887665443

>PRK07774 short chain dehydrogenase; Provisional

Probab=93.74  E-value=1  Score=40.63  Aligned_cols=40  Identities=30%  Similarity=0.377  Sum_probs=35.0

Q ss_pred             cEEEEECC-CcchHHHHHHHHHCCCeeEEecCCHHHHHHHH
Q psy9056         221 KTVAVLGA-GLMGAGIAHVTVDKGYNTIVKDSFEKGLARGL  260 (359)
Q Consensus       221 ~kI~IIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~  260 (359)
                      ++|-|.|+ |.+|..++..|++.|++|++.+++++..+...
T Consensus         7 k~vlItGasg~iG~~la~~l~~~g~~vi~~~r~~~~~~~~~   47 (250)
T PRK07774          7 KVAIVTGAAGGIGQAYAEALAREGASVVVADINAEGAERVA   47 (250)
T ss_pred             CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence            67899997 99999999999999999999999987655443

>PRK06180 short chain dehydrogenase; Provisional

Probab=93.72  E-value=0.86  Score=42.25  Aligned_cols=39  Identities=21%  Similarity=0.229  Sum_probs=34.6

Q ss_pred             ccEEEEECC-CcchHHHHHHHHHCCCeeEEecCCHHHHHH
Q psy9056         220 VKTVAVLGA-GLMGAGIAHVTVDKGYNTIVKDSFEKGLAR  258 (359)
Q Consensus       220 ~~kI~IIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~  258 (359)
                      .++|-|.|+ |.+|..++..|++.|++|++.+++++.++.
T Consensus         4 ~~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~   43 (277)
T PRK06180          4 MKTWLITGVSSGFGRALAQAALAAGHRVVGTVRSEAARAD   43 (277)
T ss_pred             CCEEEEecCCChHHHHHHHHHHhCcCEEEEEeCCHHHHHH
Confidence            467999996 999999999999999999999999876544

>PRK07067 sorbitol dehydrogenase; Provisional

Probab=93.71  E-value=0.13  Score=47.03  Aligned_cols=41  Identities=17%  Similarity=0.173  Sum_probs=36.0

Q ss_pred             cEEEEECC-CcchHHHHHHHHHCCCeeEEecCCHHHHHHHHH
Q psy9056         221 KTVAVLGA-GLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLG  261 (359)
Q Consensus       221 ~kI~IIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~  261 (359)
                      ++|-|.|+ |.+|..++..|++.|++|++.+++.+.++....
T Consensus         7 ~~vlItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~   48 (257)
T PRK07067          7 KVALLTGAASGIGEAVAERYLAEGARVVIADIKPARARLAAL   48 (257)
T ss_pred             CEEEEeCCCchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHH
Confidence            57889986 999999999999999999999999987766544

>PRK10538 malonic semialdehyde reductase; Provisional

Probab=93.70  E-value=0.74  Score=41.82  Aligned_cols=39  Identities=23%  Similarity=0.240  Sum_probs=34.0

Q ss_pred             cEEEEECC-CcchHHHHHHHHHCCCeeEEecCCHHHHHHH
Q psy9056         221 KTVAVLGA-GLMGAGIAHVTVDKGYNTIVKDSFEKGLARG  259 (359)
Q Consensus       221 ~kI~IIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~  259 (359)
                      ++|-|.|+ |.+|..++..|++.|++|++.+++++.++..
T Consensus         1 ~~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~   40 (248)
T PRK10538          1 MIVLVTGATAGFGECITRRFIQQGHKVIATGRRQERLQEL   40 (248)
T ss_pred             CEEEEECCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHH
Confidence            36889996 9999999999999999999999998765543

>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=93.70  E-value=0.14  Score=48.09  Aligned_cols=93  Identities=18%  Similarity=0.180  Sum_probs=64.8

Q ss_pred             hhhHHHHHhHhhhhhhhhcCCCCCCCCccEEEEECC-CcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHH
Q psy9056         193 PQSKGLMGLFRAQTECKKNRLGKPQTPVKTVAVLGA-GLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAV  271 (359)
Q Consensus       193 ~~~~~~~~af~~k~~~~~~~~~~~~~~~~kI~IIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~  271 (359)
                      |-+..++-.+++...-   +     -.=++|.|||- ..+|.+++..|.+.|..|++++..-..++              
T Consensus       140 PcTp~avi~ll~~y~i---~-----l~Gk~vvViGrS~iVGkPla~lL~~~~atVt~chs~T~~l~--------------  197 (284)
T PRK14177        140 PCTPYGMVLLLKEYGI---D-----VTGKNAVVVGRSPILGKPMAMLLTEMNATVTLCHSKTQNLP--------------  197 (284)
T ss_pred             CCCHHHHHHHHHHhCC---C-----CCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCCCCHH--------------
Confidence            4456777777765532   1     22279999995 89999999999999999999984422111              


Q ss_pred             hhccCChHHHHhhhcccccccCcCCCCCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCC
Q psy9056         272 KRKKMSALDRDRYLASLVGTLSYDPFKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSA  337 (359)
Q Consensus       272 ~~~~~~~~~~~~~~~~i~~~~~~~~l~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~  337 (359)
                                             +.+++||+||.|+.-.-     ++.  .++++++++|++...+
T Consensus       198 -----------------------~~~~~ADIvIsAvGk~~-----~i~--~~~ik~gavVIDvGin  233 (284)
T PRK14177        198 -----------------------SIVRQADIIVGAVGKPE-----FIK--ADWISEGAVLLDAGYN  233 (284)
T ss_pred             -----------------------HHHhhCCEEEEeCCCcC-----ccC--HHHcCCCCEEEEecCc
Confidence                                   23688999999986333     222  3457789998876543

>PRK07677 short chain dehydrogenase; Provisional

Probab=93.69  E-value=1  Score=40.90  Aligned_cols=41  Identities=22%  Similarity=0.318  Sum_probs=34.7

Q ss_pred             cEEEEECC-CcchHHHHHHHHHCCCeeEEecCCHHHHHHHHH
Q psy9056         221 KTVAVLGA-GLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLG  261 (359)
Q Consensus       221 ~kI~IIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~  261 (359)
                      +++.|.|+ |.+|..++..+++.|++|++.+++++.++....
T Consensus         2 k~~lItG~s~giG~~ia~~l~~~G~~Vi~~~r~~~~~~~~~~   43 (252)
T PRK07677          2 KVVIITGGSSGMGKAMAKRFAEEGANVVITGRTKEKLEEAKL   43 (252)
T ss_pred             CEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence            46788886 889999999999999999999999876665443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	359
2wtb_A	725	Arabidopsis Thaliana Multifuctional Protein, Mfp2 L		1e-40
1wdk_A	715	Fatty Acid Beta-Oxidation Multienzyme Complex From		5e-34
3zw8_A	742	Crystal Structure Of Rat Peroxisomal Multifunctiona		2e-25
2x58_A	727	The Crystal Structure Of Mfe1 Liganded With Coa Len		3e-25
3zwb_A	742	Crystal Structure Of Rat Peroxisomal Multifunctiona		1e-24
2ppy_A	265	Crystal Structure Of Enoyl-Coa Hydrates (Gk_1992) F		4e-12
3mog_A	483	Crystal Structure Of 3-Hydroxybutyryl-Coa Dehydroge		5e-12
3kqf_A	265	1.8 Angstrom Resolution Crystal Structure Of Enoyl-		5e-11
2pbp_A	258	Crystal Structure Of Enoyl-Coa Hydrates Subunit I (		1e-10
3moy_A	263	Crystal Structure Of Probable Enoyl-Coa Hydratase F		4e-09
1ey3_A	258	Structure Of Enoyl-Coa Hydratase Complexed With The		4e-09
1dub_A	261	2-Enoyl-Coa Hydratase, Data Collected At 100 K, Ph		5e-09
1mj3_A	260	Crystal Structure Analysis Of Rat Enoyl-Coa Hydrata		5e-09
4fzw_A	258	Crystal Structure Of The Paaf-paag Hydratase-isomer		8e-09
2hw5_A	286	The Crystal Structure Of Human Enoyl-Coenzyme A (Co		3e-08
3q0j_A	258	Crystal Structure Of The Mycobacterium Tuberculosis		3e-08
3pzk_A	257	Crystal Structure Of The Mycobacterium Tuberculosis		3e-08
3h81_A	278	Crystal Structure Of Enoyl-Coa Hydratase From Mycob		3e-08
1zcj_A	463	Crystal Structure Of 3-Hydroxyacyl-Coa Dehydrogenas		4e-08
3pea_A	261	Crystal Structure Of Enoyl-Coa Hydratase From Bacil		6e-08
3trr_A	256	Crystal Structure Of A Probable Enoyl-Coa Hydratase		6e-07
2hdh_A	293	Biochemical Characterization And Structure Determin		2e-06
1il0_A	302	X-Ray Crystal Structure Of The E170q Mutant Of Huma		2e-06
1f0y_A	302	L-3-Hydroxyacyl-Coa Dehydrogenase Complexed With Ac		2e-06
1m75_A	302	Crystal Structure Of The N208s Mutant Of L-3-Hydrox		2e-06
3rqs_A	324	Crystal Structure Of Human L-3- Hydroxyacyl-Coa Deh		3e-06
3rsi_A	265	The Structure Of A Putative Enoyl-Coa HydrataseISOM		3e-06
1f12_A	310	L-3-Hydroxyacyl-Coa Dehydrogenase Complexed With 3-		3e-06
3had_A	308	Biochemical Characterization And Structure Determin		4e-06
3hdh_A	302	Pig Heart Short Chain L-3-Hydroxyacyl Coa Dehydroge		5e-06
1lsj_A	302	Crystal Structure Of The E110q Mutant Of L-3-hydrox		5e-06
1lso_A	302	Crystal Structure Of The S137a Mutant Of L-3-Hydrox		5e-06
3h0u_A	289	Crystal Structure Of A Putative Enoyl-Coa Hydratase		7e-06
1m76_A	302	Crystal Structure Of The S137c Mutant Of L-3-Hydrox		8e-06
3k6j_A	460	Crystal Structure Of The Dehydrogenase Part Of Mult		8e-06
3r9s_A	267	Structure Of A Carnitinyl-Coa Dehydratase From Myco		1e-05
3r9t_A	267	Structure Of Echa1_1 From Mycobacterium Paratubercu		1e-05
1hzd_A	272	Crystal Structure Of Human Auh Protein, An Rna-Bind		2e-05
3hin_A	275	Crystal Structure Of Putative Enoyl-Coa Hydratase F		2e-05
3qka_A	261	Crystal Structure Of Enoyl-Coa Hydratase Echa5 From		5e-05
1zej_A	293	Crystal Structure Of The 3-Hydroxyacyl-Coa Dehydrog		7e-05
3r0o_A	273	Crystal Structure Of Carnitinyl-Coa Hydratase From		1e-04
3swx_A	265	Crystal Structure Of A Probable Enoyl-Coa Hydratase		1e-04
3r9q_A	262	Structure Of A Probable Enoyl-Coa HydrataseISOMERAS		1e-04
2w3p_A	556	Boxc Crystal Structure Length = 556		2e-04
3qre_A	298	Crystal Structure Of An Enoyl-Coa Hydratase Echa12_		2e-04
3gkb_A	287	Crystal Structure Of A Putative Enoyl-coa Hydratase		2e-04
3m6m_A	305	Crystal Structure Of Rpff Complexed With Rec Domain		3e-04
4di1_A	277	Crystal Structure Of Enoyl-Coa Hydratase Echa17 Fro		5e-04
3lao_A	258	Crystal Structure Of Enoyl-Coa Hydratase From Pseud		5e-04
4fzw_C	274	Crystal Structure Of The Paaf-paag Hydratase-isomer		5e-04

>pdb|2WTB|A Chain A, Arabidopsis Thaliana Multifuctional Protein, Mfp2 Length = 725

Iteration: 1
 Score =  163 bits (413), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 112/346 (32%), Positives = 170/346 (49%), Gaps = 26/346 (7%)
Query: 12  LACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAK 71
           +ACH RI     +  LGLPE+ LG++PG GGTQRLP+L  L   L+M LT K +KA++  
Sbjct: 122 MACHARISAPAAQ--LGLPELQLGVIPGFGGTQRLPRLVGLTKALEMILTSKPVKAEEGH 179
Query: 72  KMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDVA 131
            +G++D +V P                    V TA + A     + R KP +        
Sbjct: 180 SLGLIDAVVPP-----------------AELVTTARRWALDI--VGRRKPWVSSVSKTDK 220
Query: 132 LKFEFVRNQIFGKAKEKVMKMSGGLYPAPLKILDVVRTGIEKGPSAGYEAEAEGFSQLAM 191
           L       +I   AK + +K +  +   PL  LD +  GI  GP AG E EAE  SQ+  
Sbjct: 221 LPPLGEAREILTFAKAQTLKRAPNM-KHPLMCLDAIEVGIVSGPRAGLEKEAEVASQVVK 279
Query: 192 TPQSKGLMGLFRAQTECKK----NRLGKPQTPVKTXXXXXXXXXXXXXXHVTVDKGYNTI 247
              +KGL+ +F +Q    K       G     +K                  +   Y  I
Sbjct: 280 LDTTKGLIHVFFSQRGTAKVPGVTDRGLVPRKIKKVAIIGGGLMGSGIATALILSNYPVI 339
Query: 248 VKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPFKNADMVIEAV 307
           +K+  EK L  G+G++K  L   V++  MS    ++ ++ L G+L Y+ F++ DMVIEAV
Sbjct: 340 LKEVNEKFLEAGIGRVKANLQSRVRKGSMSQEKFEKTMSLLKGSLDYESFRDVDMVIEAV 399
Query: 308 FEDINIKHQVIKEIEAVVPPHCVVATNTSAIPITKIAAASKRPDKV 353
            E+I++K Q+  ++E   P HC++A+NTS I + KI   +K  D++
Sbjct: 400 IENISLKQQIFADLEKYCPQHCILASNTSTIDLNKIGERTKSQDRI 445

>pdb|1WDK|A Chain A, Fatty Acid Beta-Oxidation Multienzyme Complex From Pseudomonas Fragi, Form I (Native2) Length = 715

Iteration: 1
 Score =  141 bits (356), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 110/351 (31%), Positives = 166/351 (47%), Gaps = 25/351 (7%)
Query: 10  VALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADK 69
           + LA  +R++    K  +GLPEV LG+ PG GGT RLP+L  + N ++   +GK  +A+ 
Sbjct: 121 MCLAADFRVMADSAK--IGLPEVKLGIYPGFGGTVRLPRLIGVDNAVEWIASGKENRAED 178
Query: 70  AKKMGIVDQLV--EPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKV 127
           A K+  VD +V  + LG       +R +    E+      Q    KLK+N  + M     
Sbjct: 179 ALKVSAVDAVVTADKLGAAALDLIKRAIS--GELDYKAKRQPKLEKLKLNAIEQM----- 231
Query: 128 LDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAPLKILDVVRTGIEKGPSAGYEAEAEGFS 187
               + FE  +  + G+A        G  YPAP++ +  ++     G     E EA GF+
Sbjct: 232 ----MAFETAKGFVAGQA--------GPNYPAPVEAIKTIQKAANFGRDKALEVEAAGFA 279
Query: 188 QLAMTPQSKGLMGLFRAQTECKKNR--LGKPQTPVKTXXXXXXXXXXXXXXHVTVDKGYN 245
           +LA T  S  L+GLF    E KK      K    VK               + +  KG  
Sbjct: 280 KLAKTSASNCLIGLFLNDQELKKKAKVYDKIAKDVKQAAVLGAGIMGGGIAYQSASKGTP 339
Query: 246 TIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPFKNADMVIE 305
            ++KD  E G+ +GL +    L G V + +M+       L  +  TLSY  F N D+V+E
Sbjct: 340 ILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRPTLSYGDFGNVDLVVE 399
Query: 306 AVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPITKIAAASKRPDKVRNM 356
           AV E+  +K  V+ E+E  V    ++A+NTS I I+ +A A KRP+    M
Sbjct: 400 AVVENPKVKQAVLAEVENHVREDAILASNTSTISISLLAKALKRPENFVGM 450

>pdb|3ZW8|A Chain A, Crystal Structure Of Rat Peroxisomal Multifunctional Enzyme Type 1 (rpmfe1) In Apo Form Length = 742

Iteration: 1
 Score =  112 bits (281), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 97/354 (27%), Positives = 160/354 (45%), Gaps = 48/354 (13%)
Query: 14  CHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKM 73
           CHYRI   + K  +GLPEV LG+LPGA GTQ LP++  +P  LD+  +GK L AD+A ++
Sbjct: 128 CHYRIA--NAKARVGLPEVTLGILPGARGTQLLPRVVGVPVALDLITSGKYLSADEALRL 185
Query: 74  GIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDVALK 133
           GI+D +V+      + P E  +++ +++                  KP+ P ++ +  + 
Sbjct: 186 GILDAVVK------SDPVEEAIKFAQKII----------------DKPIEPRRIFNKPVP 223
Query: 134 FEFVRNQIFGKAKEKVMKMSGGLYPAPLKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTP 193
                + +F +A  KV K   G+  AP   +  ++  ++     G + E + F  L  + 
Sbjct: 224 SLPNMDSVFAEAIAKVRKQYPGVL-APETCVRSIQASVKHPYEVGIKEEEKLFMYLRASG 282
Query: 194 QSKGLMGLFRAQTECKKNRLGKPQTPVKTXXXXXXXXXXXXXXHVTVDKGYNTIVKDSFE 253
           Q+K L   F A  E   N+   P                      T+ +G    +  SF 
Sbjct: 283 QAKALQYAFFA--EKSANKWSTPSGASWKTASAQPVSSVGVLGLGTMGRG----IAISFA 336
Query: 254 KGLARGLGQIKTGLD----GAVKRKKMSALDRDRYLASLVGTLSYDP----------FKN 299
           +    G+  +    D     A K+     L+++   A   G  S  P             
Sbjct: 337 R---VGISVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRFSSSTKELST 393
Query: 300 ADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPITKIAAASKRPDKV 353
            D+V+EAVFED+N+K +V  E+ A+  P   + TNTSA+ +  IA+++ RP  V
Sbjct: 394 VDLVVEAVFEDMNLKKKVFAELSALCKPGAFLCTNTSALNVDDIASSTDRPQLV 447

>pdb|2X58|A Chain A, The Crystal Structure Of Mfe1 Liganded With Coa Length = 727

Iteration: 1
 Score =  112 bits (281), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 97/354 (27%), Positives = 160/354 (45%), Gaps = 48/354 (13%)
Query: 14  CHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKM 73
           CHYRI   + K  +GLPEV LG+LPGA GTQ LP++  +P  LD+  +GK L AD+A ++
Sbjct: 113 CHYRIA--NAKARVGLPEVTLGILPGARGTQLLPRVVGVPVALDLITSGKYLSADEALRL 170
Query: 74  GIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDVALK 133
           GI+D +V+      + P E  +++ +++                  KP+ P ++ +  + 
Sbjct: 171 GILDAVVK------SDPVEEAIKFAQKII----------------DKPIEPRRIFNKPVP 208
Query: 134 FEFVRNQIFGKAKEKVMKMSGGLYPAPLKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTP 193
                + +F +A  KV K   G+  AP   +  ++  ++     G + E + F  L  + 
Sbjct: 209 SLPNMDSVFAEAIAKVRKQYPGVL-APETCVRSIQASVKHPYEVGIKEEEKLFMYLRASG 267
Query: 194 QSKGLMGLFRAQTECKKNRLGKPQTPVKTXXXXXXXXXXXXXXHVTVDKGYNTIVKDSFE 253
           Q+K L   F A  E   N+   P                      T+ +G    +  SF 
Sbjct: 268 QAKALQYAFFA--EKSANKWSTPSGASWKTASAQPVSSVGVLGLGTMGRG----IAISFA 321
Query: 254 KGLARGLGQIKTGLD----GAVKRKKMSALDRDRYLASLVGTLSYDP----------FKN 299
           +    G+  +    D     A K+     L+++   A   G  S  P             
Sbjct: 322 R---VGISVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRFSSSTKELST 378
Query: 300 ADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPITKIAAASKRPDKV 353
            D+V+EAVFED+N+K +V  E+ A+  P   + TNTSA+ +  IA+++ RP  V
Sbjct: 379 VDLVVEAVFEDMNLKKKVFAELSALCKPGAFLCTNTSALNVDDIASSTDRPQLV 432

>pdb|3ZWB|A Chain A, Crystal Structure Of Rat Peroxisomal Multifunctional Enzyme Type 1 (rpmfe1) Complexed With 2trans-hexenoyl-coa Length = 742

Iteration: 1
 Score =  110 bits (275), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 96/354 (27%), Positives = 159/354 (44%), Gaps = 48/354 (13%)
Query: 14  CHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKM 73
           CHYRI   + K  +GLP V LG+LPGA GTQ LP++  +P  LD+  +GK L AD+A ++
Sbjct: 128 CHYRIA--NAKARVGLPAVTLGILPGARGTQLLPRVVGVPVALDLITSGKYLSADEALRL 185
Query: 74  GIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDVALK 133
           GI+D +V+      + P E  +++ +++                  KP+ P ++ +  + 
Sbjct: 186 GILDAVVK------SDPVEEAIKFAQKII----------------DKPIEPRRIFNKPVP 223
Query: 134 FEFVRNQIFGKAKEKVMKMSGGLYPAPLKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTP 193
                + +F +A  KV K   G+  AP   +  ++  ++     G + E + F  L  + 
Sbjct: 224 SLPNMDSVFAEAIAKVRKQYPGVL-APETCVRSIQASVKHPYEVGIKEEEKLFMYLRASG 282
Query: 194 QSKGLMGLFRAQTECKKNRLGKPQTPVKTXXXXXXXXXXXXXXHVTVDKGYNTIVKDSFE 253
           Q+K L   F A  E   N+   P                      T+ +G    +  SF 
Sbjct: 283 QAKALQYAFFA--EKSANKWSTPSGASWKTASAQPVSSVGVLGLGTMGRG----IAISFA 336
Query: 254 KGLARGLGQIKTGLD----GAVKRKKMSALDRDRYLASLVGTLSYDP----------FKN 299
           +    G+  +    D     A K+     L+++   A   G  S  P             
Sbjct: 337 R---VGISVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRFSSSTKELST 393
Query: 300 ADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPITKIAAASKRPDKV 353
            D+V+EAVFED+N+K +V  E+ A+  P   + TNTSA+ +  IA+++ RP  V
Sbjct: 394 VDLVVEAVFEDMNLKKKVFAELSALCKPGAFLCTNTSALNVDDIASSTDRPQLV 447

>pdb|2PPY|A Chain A, Crystal Structure Of Enoyl-Coa Hydrates (Gk_1992) From Geobacillus Kaustophilus Hta426 Length = 265

Iteration: 1
 Score = 68.9 bits (167), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 44/125 (35%), Positives = 69/125 (55%), Gaps = 10/125 (8%)
Query: 11  ALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKA 70
           ALAC  R    D+   +GLPEV LG+L G GGTQRL +L      LD  +TG+T+   +A
Sbjct: 120 ALACDLRFX-GDEAGKIGLPEVSLGVLAGTGGTQRLARLIGYSRALDXNITGETITPQEA 178
Query: 71  KKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDV 130
            ++G+V+++            ERT EY  ++A +    +++ KL I   K    +  L+V
Sbjct: 179 LEIGLVNRVFPQA-----ETRERTREYARKLANSATYAVSNIKLAIXNGK----EXPLNV 229
Query: 131 ALKFE 135
           A+++E
Sbjct: 230 AIRYE 234

>pdb|3MOG|A Chain A, Crystal Structure Of 3-Hydroxybutyryl-Coa Dehydrogenase From Escherichia Coli K12 Substr. Mg1655 Length = 483

Iteration: 1
 Score = 68.6 bits (166), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 38/120 (31%), Positives = 60/120 (50%)
Query: 237 HVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDP 296
            V    G+  ++ D   + L R +  I   L+  V R K++A   +R L  L+       
Sbjct: 22  EVAASHGHQVLLYDISAEALTRAIDGIHARLNSRVTRGKLTAETCERTLKRLIPVTDIHA 81
Query: 297 FKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPITKIAAASKRPDKVRNM 356
              AD+VIEA  E + +K  +  ++  V PP  ++ TNTS+I IT IAA  K P++V  +
Sbjct: 82  LAAADLVIEAASERLEVKKALFAQLAEVCPPQTLLTTNTSSISITAIAAEIKNPERVAGL 141

>pdb|3KQF|A Chain A, 1.8 Angstrom Resolution Crystal Structure Of Enoyl-Coa Hydratase From Bacillus Anthracis. Length = 265

Iteration: 1
 Score = 65.5 bits (158), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 36/95 (37%), Positives = 58/95 (61%), Gaps = 7/95 (7%)
Query: 10  VALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADK 69
           ++LAC +RI  +     LGL E  L ++PGAGGTQRLP+L  +    ++  TG+ + A +
Sbjct: 120 LSLACDFRIAAES--ASLGLTETTLAIIPGAGGTQRLPRLIGVGRAKELIYTGRRISAQE 177
Query: 70  AKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVN 104
           AK+ G+V+  V P    ++  EE+ +E  E++A N
Sbjct: 178 AKEYGLVE-FVVP----VHLLEEKAIEIAEKIASN 207

>pdb|2PBP|A Chain A, Crystal Structure Of Enoyl-Coa Hydrates Subunit I (Gk_2039) From Geobacillus Kaustophilus Hta426 Length = 258

Iteration: 1
 Score = 64.3 bits (155), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 31/73 (42%), Positives = 46/73 (63%), Gaps = 2/73 (2%)
Query: 10  VALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADK 69
           +AL+C   ++V       G PEV LG++PGAGGTQRL KL      L+   TG  + A +
Sbjct: 113 LALSCD--LIVASSAAEFGFPEVNLGVMPGAGGTQRLTKLIGPKRALEWLWTGARMSAKE 170
Query: 70  AKKMGIVDQLVEP 82
           A+++GIV+++V P
Sbjct: 171 AEQLGIVNRVVSP 183

>pdb|3MOY|A Chain A, Crystal Structure Of Probable Enoyl-Coa Hydratase From Mycob Smegmatis Length = 263

Iteration: 1
 Score = 58.9 bits (141), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 46/71 (64%), Gaps = 2/71 (2%)
Query: 10  VALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADK 69
           +A+ C   +V+       G PE+ LG+LPG GGTQRL +       +D+ LTG++L A++
Sbjct: 118 LAMLCD--LVIAADTARFGQPEITLGILPGLGGTQRLTRAVGKAKAMDLCLTGRSLTAEE 175
Query: 70  AKKMGIVDQLV 80
           A+++G+V ++V
Sbjct: 176 AERVGLVSRIV 186

>pdb|1EY3|A Chain A, Structure Of Enoyl-Coa Hydratase Complexed With The Substrate Dac-Coa Length = 258

Iteration: 1
 Score = 58.9 bits (141), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 38/115 (33%), Positives = 60/115 (52%), Gaps = 11/115 (9%)
Query: 10  VALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADK 69
           +A+ C   I+   +K   G PE++LG +PGAGGTQRL +       ++M LTG  + A  
Sbjct: 113 LAMMCD--IIYAGEKAQFGQPEILLGTIPGAGGTQRLTRAVGKSLAMEMVLTGDRISAQD 170
Query: 70  AKKMGIVDQL--VEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPM 122
           AK+ G+V ++  VE L        E  ++  E++A N+   +A  K  +N    M
Sbjct: 171 AKQAGLVSKIFPVETL-------VEEAIQCAEKIANNSKIIVAMAKESVNAAFEM 218

>pdb|1DUB|A Chain A, 2-Enoyl-Coa Hydratase, Data Collected At 100 K, Ph 6.5 Length = 261

Iteration: 1
 Score = 58.9 bits (141), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 38/115 (33%), Positives = 60/115 (52%), Gaps = 11/115 (9%)
Query: 10  VALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADK 69
           +A+ C   I+   +K   G PE++LG +PGAGGTQRL +       ++M LTG  + A  
Sbjct: 116 LAMMCD--IIYAGEKAQFGQPEILLGTIPGAGGTQRLTRAVGKSLAMEMVLTGDRISAQD 173
Query: 70  AKKMGIVDQL--VEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPM 122
           AK+ G+V ++  VE L        E  ++  E++A N+   +A  K  +N    M
Sbjct: 174 AKQAGLVSKIFPVETL-------VEEAIQCAEKIANNSKIIVAMAKESVNAAFEM 221

>pdb|1MJ3|A Chain A, Crystal Structure Analysis Of Rat Enoyl-Coa Hydratase In Complex With Hexadienoyl-Coa Length = 260

Iteration: 1
 Score = 58.9 bits (141), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 38/115 (33%), Positives = 60/115 (52%), Gaps = 11/115 (9%)
Query: 10  VALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADK 69
           +A+ C   I+   +K   G PE++LG +PGAGGTQRL +       ++M LTG  + A  
Sbjct: 115 LAMMCD--IIYAGEKAQFGQPEILLGTIPGAGGTQRLTRAVGKSLAMEMVLTGDRISAQD 172
Query: 70  AKKMGIVDQL--VEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPM 122
           AK+ G+V ++  VE L        E  ++  E++A N+   +A  K  +N    M
Sbjct: 173 AKQAGLVSKIFPVETL-------VEEAIQCAEKIANNSKIIVAMAKESVNAAFEM 220

>pdb|4FZW|A Chain A, Crystal Structure Of The Paaf-paag Hydratase-isomerase Complex From E.coli Length = 258

Iteration: 1
 Score = 57.8 bits (138), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 39/113 (34%), Positives = 59/113 (52%), Gaps = 22/113 (19%)
Query: 10  VALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADK 69
           +AL C   +VV  +    GLPE+ LG++PGAGGTQRL +         M L+G+++ A +
Sbjct: 113 LALLCD--VVVAGENARFGLPEITLGIMPGAGGTQRLIRSVGKSLASKMVLSGESITAQQ 170
Query: 70  AKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPM 122
           A++ G+V  +          P + T+EY        A QLAS   K+ R  P+
Sbjct: 171 AQQAGLVSDV---------FPSDLTLEY--------ALQLAS---KMARHSPL 203

>pdb|2HW5|A Chain A, The Crystal Structure Of Human Enoyl-Coenzyme A (Coa) Hydratase Short Chain 1, Echs1 Length = 286

Iteration: 1
 Score = 56.2 bits (134), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 36/115 (31%), Positives = 59/115 (51%), Gaps = 11/115 (9%)
Query: 10  VALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADK 69
           +A+ C   I+   +K     PE+++G +PGAGGTQRL +       ++M LTG  + A  
Sbjct: 141 LAMMCD--IIYAGEKAQFAQPEILIGTIPGAGGTQRLTRAVGKSLAMEMVLTGDRISAQD 198
Query: 70  AKKMGIVDQL--VEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPM 122
           AK+ G+V ++  VE L        E  ++  E++A N+   +A  K  +N    M
Sbjct: 199 AKQAGLVSKICPVETL-------VEEAIQCAEKIASNSKIVVAMAKESVNAAFEM 246

>pdb|3Q0J|A Chain A, Crystal Structure Of The Mycobacterium Tuberculosis Crotonase In Complex With The Inhibitor Acetoacetylcoa Length = 258

Iteration: 1
 Score = 56.2 bits (134), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 43/71 (60%), Gaps = 2/71 (2%)
Query: 10  VALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADK 69
           +A+ C   I     K   G PE+ LG+LPG GG+QRL +       +D+ LTG+T+ A +
Sbjct: 113 LAMMCDVLIAADTAK--FGQPEIKLGVLPGMGGSQRLTRAIGKAKAMDLILTGRTMDAAE 170
Query: 70  AKKMGIVDQLV 80
           A++ G+V ++V
Sbjct: 171 AERSGLVSRVV 181

>pdb|3PZK|A Chain A, Crystal Structure Of The Mycobacterium Tuberculosis Crotonase In Apo Form Length = 257

Iteration: 1
 Score = 55.8 bits (133), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 43/71 (60%), Gaps = 2/71 (2%)
Query: 10  VALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADK 69
           +A+ C   I     K   G PE+ LG+LPG GG+QRL +       +D+ LTG+T+ A +
Sbjct: 112 LAMMCDVLIAADTAK--FGQPEIKLGVLPGMGGSQRLTRAIGKAKAMDLILTGRTMDAAE 169
Query: 70  AKKMGIVDQLV 80
           A++ G+V ++V
Sbjct: 170 AERSGLVSRVV 180

>pdb|3H81|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase From Mycobacterium Tuberculosis Length = 278

Iteration: 1
 Score = 55.8 bits (133), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 43/71 (60%), Gaps = 2/71 (2%)
Query: 10  VALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADK 69
           +A+ C   I     K   G PE+ LG+LPG GG+QRL +       +D+ LTG+T+ A +
Sbjct: 133 LAMMCDVLIAADTAK--FGQPEIKLGVLPGMGGSQRLTRAIGKAKAMDLILTGRTMDAAE 190
Query: 70  AKKMGIVDQLV 80
           A++ G+V ++V
Sbjct: 191 AERSGLVSRVV 201

>pdb|1ZCJ|A Chain A, Crystal Structure Of 3-Hydroxyacyl-Coa Dehydrogenase Length = 463

Iteration: 1
 Score = 55.8 bits (133), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 24/53 (45%), Positives = 37/53 (69%)
Query: 301 DMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPITKIAAASKRPDKV 353
           D+V+EAVFED+N+K +V  E+ A+  P   + TNTSA+ +  IA+++ RP  V
Sbjct: 116 DLVVEAVFEDMNLKKKVFAELSALCKPGAFLCTNTSALNVDDIASSTDRPQLV 168

>pdb|3PEA|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase From Bacillus Anthracis Str. 'ames Ancestor' Length = 261

Iteration: 1
 Score = 55.1 bits (131), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 27/67 (40%), Positives = 37/67 (55%), Gaps = 2/67 (2%)
Query: 11  ALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKA 70
           A +CH R   +  K  LGLPE+ LGL+PG  GTQRLP+        +  LT   +   +A
Sbjct: 117 AXSCHXRFATESAK--LGLPELTLGLIPGFAGTQRLPRYVGKAKACEXXLTSTPITGAEA 174
Query: 71  KKMGIVD 77
            K G+V+
Sbjct: 175 LKWGLVN 181

>pdb|3TRR|A Chain A, Crystal Structure Of A Probable Enoyl-Coa HydrataseISOMERASE FROM Mycobacterium Abscessus Length = 256

Iteration: 1
 Score = 51.6 bits (122), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 28/80 (35%), Positives = 44/80 (55%), Gaps = 2/80 (2%)
Query: 2   FAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLT 61
           FA      + L+C   +VV  +    G+PEV  GL+ GAGG  RLP        +++ LT
Sbjct: 103 FALAGGTELVLSCD--LVVAGRSAKFGIPEVKRGLVAGAGGLLRLPNRIPYQVAMELALT 160
Query: 62  GKTLKADKAKKMGIVDQLVE 81
           G++  A+ A K G +++LV+
Sbjct: 161 GESFTAEDAAKYGFINRLVD 180

>pdb|2HDH|A Chain A, Biochemical Characterization And Structure Determination Of Human Heart Short Chain L-3-Hydroxyacyl Coa Dehydrogenase Provide Insight Into Catalytic Mechanism Length = 293

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/117 (27%), Positives = 63/117 (53%), Gaps = 8/117 (6%)
Query: 243 GYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDR--DRYLASLVGTLSYDP---- 296
           G+  ++ D  E  LA+    I+  L   V +KK +   +  D ++A  + T++       
Sbjct: 27  GHTVVLVDQTEDILAKSKKGIEESLR-KVAKKKFAENPKAGDEFVAKTLSTIATSTDAAS 85
Query: 297 -FKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPITKIAAASKRPDK 352
              + D+V+EA+ E++ +K+++ K ++     H + A+NTS++ IT IA A+ R D+
Sbjct: 86  VVHSTDLVVEAIVENLKVKNELFKRLDKRAAEHTIFASNTSSLQITSIANATTRQDR 142

>pdb|1IL0|A Chain A, X-Ray Crystal Structure Of The E170q Mutant Of Human L-3- Hydroxyacyl-Coa Dehydrogenase Length = 302

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/117 (26%), Positives = 62/117 (52%), Gaps = 8/117 (6%)
Query: 243 GYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDR--DRYLASLVGTLSYDP---- 296
           G+  ++ D  E  LA+    I+  L   V +KK +   +  D ++   + T++       
Sbjct: 38  GHTVVLVDQTEDILAKSKKGIEESLR-KVAKKKFAENPKAGDEFVEKTLSTIATSTDAAS 96
Query: 297 -FKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPITKIAAASKRPDK 352
              + D+V+EA+ E++ +K+++ K ++     H + A+NTS++ IT IA A+ R D+
Sbjct: 97  VVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTSSLQITSIANATTRQDR 153

>pdb|1F0Y|A Chain A, L-3-Hydroxyacyl-Coa Dehydrogenase Complexed With Acetoacetyl-Coa And Nad+ Length = 302

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/117 (26%), Positives = 62/117 (52%), Gaps = 8/117 (6%)
Query: 243 GYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDR--DRYLASLVGTLSYDP---- 296
           G+  ++ D  E  LA+    I+  L   V +KK +   +  D ++   + T++       
Sbjct: 38  GHTVVLVDQTEDILAKSKKGIEESLR-KVAKKKFAENPKAGDEFVEKTLSTIATSTDAAS 96
Query: 297 -FKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPITKIAAASKRPDK 352
              + D+V+EA+ E++ +K+++ K ++     H + A+NTS++ IT IA A+ R D+
Sbjct: 97  VVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTSSLQITSIANATTRQDR 153

>pdb|1M75|A Chain A, Crystal Structure Of The N208s Mutant Of L-3-Hydroxyacyl- Coa Dehydrogenase In Complex With Nad And Acetoacetyl-Coa Length = 302

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/117 (26%), Positives = 62/117 (52%), Gaps = 8/117 (6%)
Query: 243 GYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDR--DRYLASLVGTLSYDP---- 296
           G+  ++ D  E  LA+    I+  L   V +KK +   +  D ++   + T++       
Sbjct: 38  GHTVVLVDQTEDILAKSKKGIEESLR-KVAKKKFAENPKAGDEFVEKTLSTIATSTDAAS 96
Query: 297 -FKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPITKIAAASKRPDK 352
              + D+V+EA+ E++ +K+++ K ++     H + A+NTS++ IT IA A+ R D+
Sbjct: 97  VVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTSSLQITSIANATTRQDR 153

>pdb|3RQS|A Chain A, Crystal Structure Of Human L-3- Hydroxyacyl-Coa Dehydrogenase (Ec1.1.1.35) From Mitochondria At The Resolution 2.0 A, Northeast Structural Genomics Consortium Target Hr487, Mitochondrial Protein Partnership Length = 324

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 31/117 (26%), Positives = 62/117 (52%), Gaps = 8/117 (6%)
Query: 243 GYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDR--DRYLASLVGTLSYDP---- 296
           G+  ++ D  E  LA+    I+  L   V +KK +   +  D ++   + T++       
Sbjct: 60  GHTVVLVDQTEDILAKSKKGIEESLR-KVAKKKFAENPKAGDEFVEKTLSTIATSTDAAS 118
Query: 297 -FKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPITKIAAASKRPDK 352
              + D+V+EA+ E++ +K+++ K ++     H + A+NTS++ IT IA A+ R D+
Sbjct: 119 VVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTSSLQITSIANATTRQDR 175

>pdb|3RSI|A Chain A, The Structure Of A Putative Enoyl-Coa HydrataseISOMERASE FROM Mycobacterium Abscessus Atcc 19977 DSM 44196 Length = 265

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 34/96 (35%), Positives = 46/96 (47%), Gaps = 10/96 (10%)
Query: 2   FAEPSLATVALAC---------HYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTAL 52
             +P +A V  AC            I V D+    GLPEV  GL+PGAG   RL +    
Sbjct: 101 LTKPLIAAVNGACLGGGCEMLQQTDIRVSDEHATFGLPEVQRGLVPGAGSMVRLKRQIPY 160
Query: 53  PNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLN 88
              ++M LTG+ L A +A   G+V  +V P G  L+
Sbjct: 161 TKAMEMILTGEPLTAFEAYHFGLVGHVV-PAGTALD 195

>pdb|1F12|A Chain A, L-3-Hydroxyacyl-Coa Dehydrogenase Complexed With 3- Hydroxybutyryl-Coa Length = 310

Iteration: 1
 Score = 49.3 bits (116), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 19/54 (35%), Positives = 37/54 (68%)
Query: 299 NADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPITKIAAASKRPDK 352
           + D+V+EA+ E++ +K+++ K ++     H + A+NTS++ IT IA A+ R D+
Sbjct: 100 STDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTSSLQITSIANATTRQDR 153

>pdb|3HAD|A Chain A, Biochemical Characterization And Structure Determination Of Human Heart Short Chain L-3-Hydroxyacyl Coa Dehydrogenase Provide Insight Into Catalytic Mechanism Length = 308

Iteration: 1
 Score = 48.9 bits (115), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 31/117 (26%), Positives = 62/117 (52%), Gaps = 8/117 (6%)
Query: 243 GYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDR--DRYLASLVGTLSYDP---- 296
           G+  ++ D  E  LA+    I+  L   V +KK +   +  D ++   + T++       
Sbjct: 38  GHTVVLVDQTEDILAKSKKGIEESLR-KVAKKKFAENPKAGDEFVEKTLSTIATSTDAAS 96
Query: 297 -FKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPITKIAAASKRPDK 352
              + D+V+EA+ E++ +K+++ K ++     H + A+NTS++ IT IA A+ R D+
Sbjct: 97  VVHSTDLVVEAIVENLKVKNELFKRLDKRAAEHTIFASNTSSLQITSIANATTRQDR 153

>pdb|3HDH|A Chain A, Pig Heart Short Chain L-3-Hydroxyacyl Coa Dehydrogenase Revisited: Sequence Analysis And Crystal Structure Determination Length = 302

Iteration: 1
 Score = 48.5 bits (114), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 32/122 (26%), Positives = 61/122 (50%), Gaps = 6/122 (4%)
Query: 237 HVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRK-----KMSALDRDRYLASL-VG 290
            V    G+  ++ D  E  LA+    I+  L    K+K     K      ++ L+S+   
Sbjct: 32  QVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSSISTS 91
Query: 291 TLSYDPFKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPITKIAAASKRP 350
           T +     + D+V+EA+ E++ +K ++ K ++     H + A+NTS++ IT +A A+ R 
Sbjct: 92  TDAASVVHSTDLVVEAIVENLKVKSELFKRLDKFAAEHTIFASNTSSLQITSLANATTRQ 151
Query: 351 DK 352
           D+
Sbjct: 152 DR 153

>pdb|1LSJ|A Chain A, Crystal Structure Of The E110q Mutant Of L-3-hydroxyacyl- Coa Dehydrogenase In Complex With Nad Length = 302

Iteration: 1
 Score = 48.5 bits (114), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 30/117 (25%), Positives = 62/117 (52%), Gaps = 8/117 (6%)
Query: 243 GYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDR--DRYLASLVGTLSYDP---- 296
           G+  ++ D  E  LA+    I+  L   V +KK +   +  D ++   + T++       
Sbjct: 38  GHTVVLVDQTEDILAKSKKGIEESLR-KVAKKKFAENPKAGDEFVEKTLSTIATSTDAAS 96
Query: 297 -FKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPITKIAAASKRPDK 352
              + D+V+EA+ +++ +K+++ K ++     H + A+NTS++ IT IA A+ R D+
Sbjct: 97  VVHSTDLVVEAIVQNLKVKNELFKRLDKFAAEHTIFASNTSSLQITSIANATTRQDR 153

>pdb|1LSO|A Chain A, Crystal Structure Of The S137a Mutant Of L-3-Hydroxyacyl- Coa Dehydrogenase In Complex With Nad Length = 302

Iteration: 1
 Score = 48.5 bits (114), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 30/117 (25%), Positives = 62/117 (52%), Gaps = 8/117 (6%)
Query: 243 GYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDR--DRYLASLVGTLSYDP---- 296
           G+  ++ D  E  LA+    I+  L   V +KK +   +  D ++   + T++       
Sbjct: 38  GHTVVLVDQTEDILAKSKKGIEESLR-KVAKKKFAENPKAGDEFVEKTLSTIATSTDAAS 96
Query: 297 -FKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPITKIAAASKRPDK 352
              + D+V+EA+ E++ +K+++ K ++     H + A+NT+++ IT IA A+ R D+
Sbjct: 97  VVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTASLQITSIANATTRQDR 153

>pdb|3H0U|A Chain A, Crystal Structure Of A Putative Enoyl-Coa Hydratase From Streptomyces Avermitilis Length = 289

Iteration: 1
 Score = 48.1 bits (113), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 44/151 (29%), Positives = 64/151 (42%), Gaps = 22/151 (14%)
Query: 12  LACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAK 71
           LAC  R   ++    LG PEV +G  PGAG  Q L +L      L+  LT     AD A+
Sbjct: 123 LACDMRFASRENAI-LGQPEVGIGAPPGAGAIQHLTRLLGRGRALEAVLTSSDFDADLAE 181
Query: 72  KMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTA----SQLASGKLKINRTKPMIPDKV 127
           + G V++ V         P+    E++  +A   +      L + K  IN      P +V
Sbjct: 182 RYGWVNRAV---------PDAELDEFVAGIAARMSGFPRDALIAAKSAINAISLPAPAEV 232
Query: 128 -LDVALKFEFVRNQIFGKAKEKVMKMSGGLY 157
             D AL  + VR        EKV + +  L+
Sbjct: 233 RADAALFQQLVRG-------EKVQQRTAELF 256

>pdb|1M76|A Chain A, Crystal Structure Of The S137c Mutant Of L-3-Hydroxyacyl- Coa Dehydrogenase In Complex With Nad And Acetoacetyl-Coa Length = 302

Iteration: 1
 Score = 48.1 bits (113), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 30/117 (25%), Positives = 61/117 (52%), Gaps = 8/117 (6%)
Query: 243 GYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDR--DRYLASLVGTLSYDP---- 296
           G+  ++ D  E  LA+    I+  L   V +KK +   +  D ++   + T++       
Sbjct: 38  GHTVVLVDQTEDILAKSKKGIEESLR-KVAKKKFAENPKAGDEFVEKTLSTIATSTDAAS 96
Query: 297 -FKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPITKIAAASKRPDK 352
              + D+V+EA+ E++ +K+++ K ++     H + A+NT ++ IT IA A+ R D+
Sbjct: 97  VVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTCSLQITSIANATTRQDR 153

>pdb|3K6J|A Chain A, Crystal Structure Of The Dehydrogenase Part Of Multifuctional Enzyme 1 From C.Elegans Length = 460

Iteration: 1
 Score = 48.1 bits (113), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 18/68 (26%), Positives = 39/68 (57%)
Query: 286 ASLVGTLSYDPFKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPITKIAA 345
           A+L  T  +    N D+++E+V ED+ +K ++   +E +    C+  TNTS++ + +I++
Sbjct: 117 ANLKITSDFHKLSNCDLIVESVIEDMKLKKELFANLENICKSTCIFGTNTSSLDLNEISS 176
Query: 346 ASKRPDKV 353
             + P  +
Sbjct: 177 VLRDPSNL 184

>pdb|3R9S|A Chain A, Structure Of A Carnitinyl-Coa Dehydratase From Mycobacterium Avium 104 Length = 267

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 40/70 (57%)
Query: 12  LACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAK 71
           LA    +VV D++   GLPEV  GL+  AGG  R+ +       + + LTG+ L A  A+
Sbjct: 119 LALASDLVVADERAQFGLPEVKRGLIAAAGGVFRIAEQLPRKVAMRLLLTGEPLSAAAAR 178
Query: 72  KMGIVDQLVE 81
             G+++++VE
Sbjct: 179 DWGLINEVVE 188

>pdb|3R9T|A Chain A, Structure Of Echa1_1 From Mycobacterium Paratuberculosis Atcc Baa-968 K-10 Length = 267

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 40/70 (57%)
Query: 12  LACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAK 71
           LA    +VV D++   GLPEV  GL+  AGG  R+ +       + + LTG+ L A  A+
Sbjct: 119 LALASDLVVADERAQFGLPEVKRGLIAAAGGVFRIAEQLPRKVAMRLLLTGEPLSAAAAR 178
Query: 72  KMGIVDQLVE 81
             G+++++VE
Sbjct: 179 DWGLINEVVE 188

>pdb|1HZD|A Chain A, Crystal Structure Of Human Auh Protein, An Rna-Binding Homologue Of Enoyl-Coa Hydratase Length = 272

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 21/68 (30%), Positives = 37/68 (54%), Gaps = 2/68 (2%)
Query: 14  CHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKM 73
           C  R+     K  +GL E  L ++PG GGTQRLP+   +    ++  + + L   +AK +
Sbjct: 127 CDIRVAASSAK--MGLVETKLAIIPGGGGTQRLPRAIGMSLAKELIFSARVLDGKEAKAV 184
Query: 74  GIVDQLVE 81
           G++  ++E
Sbjct: 185 GLISHVLE 192

>pdb|3HIN|A Chain A, Crystal Structure Of Putative Enoyl-Coa Hydratase From Rhodopseudomonas Palustris Cga009 Length = 275

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 34/70 (48%)
Query: 12  LACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAK 71
           LAC   I V +      LPE   G+  G GG+ RLP+L  +  + DM LTG+   A +  
Sbjct: 124 LACAAHIRVAEASAYYALPEGSRGIFVGGGGSVRLPRLIGVARMADMMLTGRVYSAAEGV 183
Query: 72  KMGIVDQLVE 81
             G    L+E
Sbjct: 184 VHGFSQYLIE 193

>pdb|3QKA|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase Echa5 From Mycobacterium Marinum Length = 261

Iteration: 1
 Score = 45.4 bits (106), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 24/71 (33%), Positives = 41/71 (57%), Gaps = 2/71 (2%)
Query: 10  VALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADK 69
           +AL C  R+  +D   G+      + L+ G  GT RLP+L      +DM LTG+ ++AD+
Sbjct: 116 LALWCDLRVAEQDAVFGVFCRRWGVPLIDG--GTVRLPRLIGHSRAMDMILTGRAVQADE 173
Query: 70  AKKMGIVDQLV 80
           A  +G+ +++V
Sbjct: 174 ALAIGLANRVV 184

>pdb|1ZEJ|A Chain A, Crystal Structure Of The 3-Hydroxyacyl-Coa Dehydrogenase (Hbd-9, Af2017) From Archaeoglobus Fulgidus Dsm 4304 At 2.00 A Resolution Length = 293

Iteration: 1
 Score = 44.7 bits (104), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 40/69 (57%), Gaps = 4/69 (5%)
Query: 285 LASLVGTLSYDPFKNADMVIEAVFEDINIKHQVIKEIEAVV-PPHCVVATNTSAIPITKI 343
           L+ +  T + +  K+ D+V EAVFED+N K +V++E+E +   P C   +NTS I +  I
Sbjct: 59  LSKIEFTTTLEKVKDCDIVXEAVFEDLNTKVEVLREVERLTNAPLC---SNTSVISVDDI 115
Query: 344 AAASKRPDK 352
           A     P +
Sbjct: 116 AERLDSPSR 124

>pdb|3R0O|A Chain A, Crystal Structure Of Carnitinyl-Coa Hydratase From Mycobacterium Avium Length = 273

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 23/69 (33%), Positives = 39/69 (56%)
Query: 12  LACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAK 71
           LA    +V+  +    GLPEV  GL+ GAGG  R+ +       L++ LTG+ + A  A 
Sbjct: 125 LALASDLVIACESASFGLPEVKRGLIAGAGGVFRIVEQLPRKVALELVLTGEPMTASDAL 184
Query: 72  KMGIVDQLV 80
           + G+++++V
Sbjct: 185 RWGLINEVV 193

>pdb|3SWX|A Chain A, Crystal Structure Of A Probable Enoyl-Coa HydrataseISOMERASE FROM Mycobacterium Abscessus Length = 265

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Query: 10  VALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADK 69
           + LA    IV+ D+       EV  G+ P  G T R P+     N +   LT  T  A +
Sbjct: 118 IELALAADIVIADETATFAQLEVNRGIYPFGGATIRFPRTAGWGNAMRWMLTADTFDAVE 177
Query: 70  AKKMGIVDQLVEPLG 84
           A ++GIV ++V P+G
Sbjct: 178 AHRIGIVQEIV-PVG 191

>pdb|3R9Q|A Chain A, Structure Of A Probable Enoyl-Coa HydrataseISOMERASE FROM Mycobacterium Abscessus Atcc 19977 DSM 44196 Length = 262

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/71 (33%), Positives = 42/71 (59%), Gaps = 2/71 (2%)
Query: 10  VALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADK 69
           +AL C  R+V +D   G+      + L+ G  GT RLP+L      +D+ LTG+ + A++
Sbjct: 119 LALWCDLRVVEEDAVLGVFCRRWGVPLIDG--GTIRLPRLIGHSRAMDLILTGRPVHANE 176
Query: 70  AKKMGIVDQLV 80
           A  +G+V+++V
Sbjct: 177 ALDIGLVNRVV 187

>pdb|2W3P|A Chain A, Boxc Crystal Structure Length = 556

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/76 (35%), Positives = 46/76 (60%), Gaps = 3/76 (3%)
Query: 10  VALACHYRIVVKDKKTGLGLPEV-MLGLLPGAGGTQRL-PKLTALPNVLDMTLT-GKTLK 66
           +ALAC    +V D+ + + LPEV +LG+LPG GG  R+  K     +  D+  T  + ++
Sbjct: 147 LALACDEIYLVDDRSSSVSLPEVPLLGVLPGTGGLTRVTDKRKVRHDRADIFCTVVEGVR 206
Query: 67  ADKAKKMGIVDQLVEP 82
            ++AK   +VD++V+P
Sbjct: 207 GERAKAWRLVDEVVKP 222

>pdb|3QRE|A Chain A, Crystal Structure Of An Enoyl-Coa Hydratase Echa12_1 From Mycobacterium Marinum Length = 298

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/68 (33%), Positives = 40/68 (58%), Gaps = 5/68 (7%)
Query: 35  GLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERT 94
           GL+   G +  LP+LT+    LD+ L+G+T  A++A ++G+V ++V P          R 
Sbjct: 171 GLIAEFGISWILPRLTSWAVALDLLLSGRTFLAEEAAQLGLVKEVVTP-----EQLMPRA 225
Query: 95  MEYLEEVA 102
           +EY E++A
Sbjct: 226 LEYAEDIA 233

>pdb|3GKB|A Chain A, Crystal Structure Of A Putative Enoyl-coa Hydratase From Streptomyces Avermitilis Length = 287

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 9/85 (10%)
Query: 23  KKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEP 82
           +  GLG  E ++G++PG GGTQ L         L++ LT     A+ A   G +++ +  
Sbjct: 136 ETAGLGQIEALMGIIPGGGGTQYLRGRVGRNRALEVVLTADLFDAETAASYGWINRAL-- 193
Query: 83  LGPGLNHPEERTMEYLEEVAVNTAS 107
                  P +   EY++ VA N A+
Sbjct: 194 -------PADELDEYVDRVARNIAA 211

>pdb|3M6M|A Chain A, Crystal Structure Of Rpff Complexed With Rec Domain Of Rpfc Length = 305

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 25/82 (30%), Positives = 43/82 (52%), Gaps = 3/82 (3%)
Query: 11  ALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKA 70
           AL+CH   ++ ++   +GLPEV+  L PG G    + +  +      + L G    A++ 
Sbjct: 159 ALSCH--TIIAEEGVMMGLPEVLFDLFPGMGAYSFMCQRISAHLAQKIMLEGNLYSAEQL 216
Query: 71  KKMGIVDQLVEPLGPGLNHPEE 92
             MG+VD++V P G G+   E+
Sbjct: 217 LGMGLVDRVV-PRGQGVAAVEQ 237

>pdb|4DI1|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase Echa17 From Mycobacterium Marinum Length = 277

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 23/74 (31%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
Query: 9   TVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKAD 68
           T+ALA  +R+   + K   G  E++ GL+PG GG  RL ++       ++  +G+   A+
Sbjct: 132 TLALAADWRVSGDNVK--FGATEILAGLIPGGGGMGRLTRVVGSSRAKELVFSGRFFDAE 189
Query: 69  KAKKMGIVDQLVEP 82
           +A  +G++D +V P
Sbjct: 190 EALALGLIDDMVAP 203

>pdb|3LAO|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase From Pseudomonas Aeruginosa Pa01 Length = 258

Iteration: 1
 Score = 42.0 bits (97), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 27/95 (28%), Positives = 42/95 (44%), Gaps = 5/95 (5%)
Query: 8   ATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKA 67
           A + L  +  I V  + T     EV+ G+ P  G T R P+     +     LTG    A
Sbjct: 119 AGIELXLNADIAVAARGTRFAHLEVLRGIPPLGGSTVRFPRAAGWTDAXRYILTGDEFDA 178
Query: 68  DKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVA 102
           D+A +  ++ ++VEP          R +EY E +A
Sbjct: 179 DEALRXRLLTEVVEP-----GEELARALEYAERIA 208

>pdb|4FZW|C Chain C, Crystal Structure Of The Paaf-paag Hydratase-isomerase Complex From E.coli Length = 274

Iteration: 1
 Score = 42.0 bits (97), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 30/130 (23%), Positives = 58/130 (44%), Gaps = 9/130 (6%)
Query: 18  IVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVD 77
           IV+  +     +    LGL+P  GGT  LP++      + + L G  L A++A + G++ 
Sbjct: 135 IVIAARSAKFVMAFSKLGLIPDCGGTWLLPRVAGRARAMGLALLGNQLSAEQAHEWGMIW 194
Query: 78  QLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDVALKFEFV 137
           Q+V+         +E   +  +++A + A+Q   G   I +         LD  L  E  
Sbjct: 195 QVVD---------DETLADTAQQLARHLATQPTFGLGLIKQAINSAETNTLDTQLDLERD 245
Query: 138 RNQIFGKAKE 147
             ++ G++ +
Sbjct: 246 YQRLAGRSAD 255

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	359
1wdk_A	715	Fatty oxidation complex alpha subunit; alpha2BETA2	1e-141
2wtb_A	725	MFP2, fatty acid multifunctional protein (ATMFP2);	1e-134
3zwc_A	742	Peroxisomal bifunctional enzyme; beta oxidation pa	1e-130
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	7e-67
3k6j_A	460	Protein F01G10.3, confirmed by transcript evidenc;	6e-62
3mog_A	483	Probable 3-hydroxybutyryl-COA dehydrogenase; struc	4e-47
3mog_A	483	Probable 3-hydroxybutyryl-COA dehydrogenase; struc	1e-04
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	3e-45
1zej_A	293	HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural	9e-36
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	6e-35
2w3p_A	556	Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ri	5e-30
2w3p_A	556	Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ri	1e-05
1sg4_A	260	3,2-trans-enoyl-COA isomerase, mitochondrial; crot	3e-22
3gkb_A	287	Putative enoyl-COA hydratase; structural genomics,	2e-21
2ppy_A	265	Enoyl-COA hydratase; beta-oxidation, fatty acid me	3e-21
3m6n_A	305	RPFF protein; enoyl-COA hydratase, lyase; 1.80A {X	5e-21
3ot6_A	232	Enoyl-COA hydratase/isomerase family protein; stru	1e-20
3h0u_A	289	Putative enoyl-COA hydratase; structural genomics,	2e-20
3r6h_A	233	Enoyl-COA hydratase, ECHA3; ssgcid, mycobacerium m	2e-20
1hzd_A	272	AUH, AU-binding protein/enoyl-COA hydratase; RNA-b	3e-20
3pea_A	261	Enoyl-COA hydratase/isomerase family protein; stru	1e-19
3hin_A	275	Putative 3-hydroxybutyryl-COA dehydratase; structu	2e-19
1ef8_A	261	Methylmalonyl COA decarboxylase; lyase; 1.85A {Esc	2e-19
2pbp_A	258	Enoyl-COA hydratase subunit I; B-oxidation, struct	3e-19
3kqf_A	265	Enoyl-COA hydratase/isomerase family protein; IDP0	7e-19
4di1_A	277	Enoyl-COA hydratase ECHA17; structural genomics, s	8e-19
1mj3_A	260	Enoyl-COA hydratase, mitochondrial; homohexamer, l	8e-19
3h81_A	278	Enoyl-COA hydratase ECHA8; niaid, decode, infectio	2e-18
3he2_A	264	Enoyl-COA hydratase ECHA6; fatty acid metabolism,	3e-18
3moy_A	263	Probable enoyl-COA hydratase; ssgcid, seattle stru	3e-18
1szo_A	257	6-oxocamphor hydrolase; enzyme-product complex; HE	4e-17
3pe8_A	256	Enoyl-COA hydratase; emerald biostructures, struct	5e-17
2j5i_A	276	P-hydroxycinnamoyl COA hydratase/lyase; vanillin,	6e-17
3swx_A	265	Probable enoyl-COA hydratase/isomerase; structural	8e-17
2q35_A	243	CURF; crotonase, lyase; 1.65A {Lyngbya majuscula}	8e-17
3qxz_A	265	Enoyl-COA hydratase/isomerase; structural genomics	8e-17
3lao_A	258	Enoyl-COA hydratase/isomerase; alpha-beta sandwich	9e-17
3lke_A	263	Enoyl-COA hydratase; nysgrc, target 11251J, struct	1e-16
2j5g_A	263	ALR4455 protein; enzyme evolution, C-C bond hydrol	3e-16
3rsi_A	265	Putative enoyl-COA hydratase/isomerase; structural	3e-16
3qmj_A	256	Enoyl-COA hydratase, ECHA8_6; ssgcid, NIH, niaid,	5e-16
3fdu_A	266	Putative enoyl-COA hydratase/isomerase; structural	5e-16
3r9t_A	267	ECHA1_1; ssgcid, seattle structural genomics cente	6e-16
3r9q_A	262	Enoyl-COA hydratase/isomerase; ssgcid, lyase,isome	6e-16
3rrv_A	276	Enoyl-COA hydratase/isomerase; structural genomics	6e-16
3qxi_A	265	Enoyl-COA hydratase ECHA1; structural genomics, se	9e-16
2gtr_A	261	CDY-like, chromodomain Y-like protein; structural	9e-16
1dci_A	275	Dienoyl-COA isomerase; lyase; 1.50A {Rattus norveg	9e-16
3qk8_A	272	Enoyl-COA hydratase ECHA15; ssgcid, NIH, niaid, SB	1e-15
3trr_A	256	Probable enoyl-COA hydratase/isomerase; ssgcid, st	1e-15
2a7k_A	250	CARB; crotonase, antibiotic, beta-lactam, biosynth	1e-15
2ej5_A	257	Enoyl-COA hydratase subunit II; structural genomic	1e-15
4f47_A	278	Enoyl-COA hydratase ECHA19; ssgcid, seattle struct	2e-15
1wz8_A	264	Enoyl-COA hydratase; lyase, crotonase, hexamer, st	2e-15
3qre_A	298	Enoyl-COA hydratase, ECHA12_1; structural genomics	5e-15
1nzy_A	269	Dehalogenase, 4-chlorobenzoyl coenzyme A dehalogen	6e-15
3gow_A	254	PAAG, probable enoyl-COA hydratase; the spiral fol	7e-15
2np9_A	440	DPGC; protein inhibitor complex, oxidoreductase; H	9e-15
2fbm_A	291	Y chromosome chromodomain protein 1, telomeric IS;	1e-14
1pjh_A	280	Enoyl-COA isomerase; ECI1P; beta-BETA-alpha spiral	2e-14
3p5m_A	255	Enoyl-COA hydratase/isomerase; seattle structural	4e-14
3isa_A	254	Putative enoyl-COA hydratase/isomerase; structural	5e-14
1uiy_A	253	Enoyl-COA hydratase; lyase, beta-oxidation, croton	7e-14
3sll_A	290	Probable enoyl-COA hydratase/isomerase; structural	1e-13
3t8b_A	334	1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase	3e-13
2f6q_A	280	Peroxisomal 3,2-trans-enoyl-COA isomerase; peroxis	3e-13
2uzf_A	273	Naphthoate synthase; lyase, menaquinone biosynthes	3e-13
3tlf_A	274	Enoyl-COA hydratase/isomerase; structural genomics	1e-12
3oc7_A	267	Enoyl-COA hydratase; seattle structural genomics c	2e-12
3t89_A	289	1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase	3e-12
3g64_A	279	Putative enoyl-COA hydratase; alpha-beta structure	6e-12
3i47_A	268	Enoyl COA hydratase/isomerase (crotonase); structu	7e-12
4eml_A	275	Naphthoate synthase; 1,4-dihydroxy-2-naphthoyl-coe	1e-11
3hp0_A	267	Putative polyketide biosynthesis enoyl-COA hydrata	1e-10
3l3s_A	263	Enoyl-COA hydratase/isomerase family protein; crot	2e-10
2vx2_A	287	Enoyl-COA hydratase domain-containing protein 3; i	8e-10
3myb_A	286	Enoyl-COA hydratase; ssgcid, struct genomics, seat	2e-09
3njd_A	333	Enoyl-COA hydratase; ssgcid, mycobacerium smegmati	2e-09
3t3w_A	279	Probable enoyl-COA hydratase; ssgcid, structural g	2e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-08
3ju1_A	407	Enoyl-COA hydratase/isomerase family protein; alph	2e-04
3bpt_A	363	3-hydroxyisobutyryl-COA hydrolase; coenzyme A, bet	3e-04

>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A* Length = 715

 Score =  416 bits (1072), Expect = e-141
 Identities = 117/346 (33%), Positives = 176/346 (50%), Gaps = 21/346 (6%)

Query: 10  VALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADK 69
           + LA  +R++    K  +GLPEV LG+ PG GGT RLP+L  + N ++   +GK  +A+ 
Sbjct: 121 MCLAADFRVMADSAK--IGLPEVKLGIYPGFGGTVRLPRLIGVDNAVEWIASGKENRAED 178

Query: 70  AKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLD 129
           A K+  VD +V               + L   A++   +  SG+L     +    +K+  
Sbjct: 179 ALKVSAVDAVVTA-------------DKLGAAALDLIKRAISGELDYKAKRQPKLEKLKL 225

Query: 130 VALKFEFVRNQIFGKAKEKVMKMSGGLYPAPLKILDVVRTGIEKGPSAGYEAEAEGFSQL 189
            A++    +   F  AK  V   +G  YPAP++ +  ++     G     E EA GF++L
Sbjct: 226 NAIE----QMMAFETAKGFVAGQAGPNYPAPVEAIKTIQKAANFGRDKALEVEAAGFAKL 281

Query: 190 AMTPQSKGLMGLFRAQTECKKN--RLGKPQTPVKTVAVLGAGLMGAGIAHVTVDKGYNTI 247
           A T  S  L+GLF    E KK      K    VK  AVLGAG+MG GIA+ +  KG   +
Sbjct: 282 AKTSASNCLIGLFLNDQELKKKAKVYDKIAKDVKQAAVLGAGIMGGGIAYQSASKGTPIL 341

Query: 248 VKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPFKNADMVIEAV 307
           +KD  E G+ +GL +    L G V + +M+       L  +  TLSY  F N D+V+EAV
Sbjct: 342 MKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRPTLSYGDFGNVDLVVEAV 401

Query: 308 FEDINIKHQVIKEIEAVVPPHCVVATNTSAIPITKIAAASKRPDKV 353
            E+  +K  V+ E+E  V    ++A+NTS I I+ +A A KRP+  
Sbjct: 402 VENPKVKQAVLAEVENHVREDAILASNTSTISISLLAKALKRPENF 447

>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana} Length = 725

 Score =  398 bits (1025), Expect = e-134
 Identities = 119/348 (34%), Positives = 180/348 (51%), Gaps = 26/348 (7%)

Query: 10  VALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADK 69
           +A+ACH RI        LGLPE+ LG++PG GGTQRLP+L  L   L+M LT K +KA++
Sbjct: 120 LAMACHARISAP--AAQLGLPELQLGVIPGFGGTQRLPRLVGLTKALEMILTSKPVKAEE 177

Query: 70  AKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLD 129
              +G++D +V P               L   A   A  +   +     +      K+  
Sbjct: 178 GHSLGLIDAVVPP-------------AELVTTARRWALDIVGRRKPWVSSVSKTD-KLPP 223

Query: 130 VALKFEFVRNQIFGKAKEKVMKMSGGLYPAPLKILDVVRTGIEKGPSAGYEAEAEGFSQL 189
           +    E         AK + +K +      PL  LD +  GI  GP AG E EAE  SQ+
Sbjct: 224 LGEAREI-----LTFAKAQTLKRAPN-MKHPLMCLDAIEVGIVSGPRAGLEKEAEVASQV 277

Query: 190 AMTPQSKGLMGLFRAQTECKK----NRLGKPQTPVKTVAVLGAGLMGAGIAHVTVDKGYN 245
                +KGL+ +F +Q    K       G     +K VA++G GLMG+GIA   +   Y 
Sbjct: 278 VKLDTTKGLIHVFFSQRGTAKVPGVTDRGLVPRKIKKVAIIGGGLMGSGIATALILSNYP 337

Query: 246 TIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPFKNADMVIE 305
            I+K+  EK L  G+G++K  L   V++  MS    ++ ++ L G+L Y+ F++ DMVIE
Sbjct: 338 VILKEVNEKFLEAGIGRVKANLQSRVRKGSMSQEKFEKTMSLLKGSLDYESFRDVDMVIE 397

Query: 306 AVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPITKIAAASKRPDKV 353
           AV E+I++K Q+  ++E   P HC++A+NTS I + KI   +K  D++
Sbjct: 398 AVIENISLKQQIFADLEKYCPQHCILASNTSTIDLNKIGERTKSQDRI 445

>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A* Length = 742

 Score =  390 bits (1003), Expect = e-130
 Identities = 104/351 (29%), Positives = 161/351 (45%), Gaps = 34/351 (9%)

Query: 10  VALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADK 69
           +AL CHYRI   + K  +GLPEV LG+LPGA GTQ LP++  +P  LD+  +GK L AD+
Sbjct: 124 LALGCHYRIA--NAKARVGLPEVTLGILPGARGTQLLPRVVGVPVALDLITSGKYLSADE 181

Query: 70  AKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLD 129
           A ++GI+D +V+                  E A+  A ++    ++  R          +
Sbjct: 182 ALRLGILDAVVKS--------------DPVEEAIKFAQKIIDKPIEPRRIF--------N 219

Query: 130 VALKFEFVRNQIFGKAKEKVMKMSGGLYPAPLKILDVVRTGIEKGPSAGYEAEAEGFSQL 189
             +      + +F +A  KV K   G   AP   +  ++  ++     G + E + F  L
Sbjct: 220 KPVPSLPNMDSVFAEAIAKVRKQYPG-VLAPETCVRSIQASVKHPYEVGIKEEEKLFMYL 278

Query: 190 AMTPQSKGLMGLFRAQTECKK-------NRLGKPQTPVKTVAVLGAGLMGAGIAHVTVDK 242
             + Q+K L   F A+    K       +       PV +V VLG G MG GIA      
Sbjct: 279 RASGQAKALQYAFFAEKSANKWSTPSGASWKTASAQPVSSVGVLGLGTMGRGIAISFARV 338

Query: 243 GYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPFKNADM 302
           G + +  +S  K L      I   L+    R   +   +      L  + S       D+
Sbjct: 339 GISVVAVESDPKQLDAAKKIITFTLEKEASRAHQNG--QASAKPKLRFSSSTKELSTVDL 396

Query: 303 VIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPITKIAAASKRPDKV 353
           V+EAVFED+N+K +V  E+ A+  P   + TNTSA+ +  IA+++ RP  V
Sbjct: 397 VVEAVFEDMNLKKKVFAELSALCKPGAFLCTNTSALNVDDIASSTDRPQLV 447

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus} Length = 463

 Score =  217 bits (554), Expect = 7e-67
 Identities = 51/169 (30%), Positives = 76/169 (44%), Gaps = 9/169 (5%)

Query: 192 TPQSKGLMGLFRAQTECKK-------NRLGKPQTPVKTVAVLGAGLMGAGIAHVTVDKGY 244
           + Q+K L   F A+    K       +       PV +V VLG G MG GIA      G 
Sbjct: 2   SGQAKALQYAFFAEKSANKWSTPSGASWKTASAQPVSSVGVLGLGTMGRGIAISFARVGI 61

Query: 245 NTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPFKNADMVI 304
           + +  +S  K L      I   L+    R   +   +      L  + S       D+V+
Sbjct: 62  SVVAVESDPKQLDAAKKIITFTLEKEASRAHQNG--QASAKPKLRFSSSTKELSTVDLVV 119

Query: 305 EAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPITKIAAASKRPDKV 353
           EAVFED+N+K +V  E+ A+  P   + TNTSA+ +  IA+++ RP  V
Sbjct: 120 EAVFEDMNLKKKVFAELSALCKPGAFLCTNTSALNVDDIASSTDRPQLV 168

>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans} Length = 460

 Score =  204 bits (520), Expect = 6e-62
 Identities = 34/189 (17%), Positives = 73/189 (38%), Gaps = 15/189 (7%)

Query: 174 GPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQTECKK---------NRLGKPQTPVKTVA 224
           G    +   + G     +  Q   +                     +        V +VA
Sbjct: 2   GHHHHHHHHSTGE---NLYFQGSEVRSYLMEAHSLAGQWSLPNDRGDHTNSEAYDVNSVA 58

Query: 225 VLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRY 284
           ++G G MG  +A      G  T +    E+   + L  +          K+++    ++ 
Sbjct: 59  IIGGGTMGKAMAICFGLAGIETFLVVRNEQRCKQELEVM---YAREKSFKRLNDKRIEKI 115

Query: 285 LASLVGTLSYDPFKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPITKIA 344
            A+L  T  +    N D+++E+V ED+ +K ++   +E +    C+  TNTS++ + +I+
Sbjct: 116 NANLKITSDFHKLSNCDLIVESVIEDMKLKKELFANLENICKSTCIFGTNTSSLDLNEIS 175

Query: 345 AASKRPDKV 353
           +  + P  +
Sbjct: 176 SVLRDPSNL 184

>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli} Length = 483

 Score =  165 bits (420), Expect = 4e-47
 Identities = 51/134 (38%), Positives = 75/134 (55%)

Query: 220 VKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSAL 279
           V+TVAV+G+G MGAGIA V    G+  ++ D   + L R +  I   L+  V R K++A 
Sbjct: 5   VQTVAVIGSGTMGAGIAEVAASHGHQVLLYDISAEALTRAIDGIHARLNSRVTRGKLTAE 64

Query: 280 DRDRYLASLVGTLSYDPFKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIP 339
             +R L  L+          AD+VIEA  E + +K  +  ++  V PP  ++ TNTS+I 
Sbjct: 65  TCERTLKRLIPVTDIHALAAADLVIEAASERLEVKKALFAQLAEVCPPQTLLTTNTSSIS 124

Query: 340 ITKIAAASKRPDKV 353
           IT IAA  K P++V
Sbjct: 125 ITAIAAEIKNPERV 138

>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli} Length = 483

 Score = 42.7 bits (101), Expect = 1e-04
 Identities = 13/63 (20%), Positives = 23/63 (36%), Gaps = 1/63 (1%)

Query: 294 YDPFKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPITKIAAASKRPDKV 353
           +   + A + +EA   D     +V K+ + V     V+   T       +A    RP  V
Sbjct: 285 WRAEREAVVGLEA-VSDSFSPMKVEKKSDGVTEIDDVLLIETQGETAQALAIRLARPVVV 343

Query: 354 RNM 356
            + 
Sbjct: 344 IDK 346

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A* Length = 302

 Score =  156 bits (396), Expect = 3e-45
 Identities = 44/141 (31%), Positives = 75/141 (53%), Gaps = 6/141 (4%)

Query: 219 PVKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRK---- 274
            VK V V+G GLMGAGIA V    G+  ++ D  E  LA+    I+  L    K+K    
Sbjct: 14  IVKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAEN 73

Query: 275 -KMSALDRDRYLASLVGTLSYDPF-KNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVA 332
            K      ++ L+++  +        + D+V+EA+ E++ +K+++ K ++     H + A
Sbjct: 74  PKAGDEFVEKTLSTIATSTDAASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFA 133

Query: 333 TNTSAIPITKIAAASKRPDKV 353
           +NTS++ IT IA A+ R D+ 
Sbjct: 134 SNTSSLQITSIANATTRQDRF 154

>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus} Length = 293

 Score =  130 bits (330), Expect = 9e-36
 Identities = 41/143 (28%), Positives = 65/143 (45%), Gaps = 20/143 (13%)

Query: 214 GKPQTPVKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKR 273
                    V V+GAGLMG GIA       +  +++D  EK L     QI   L      
Sbjct: 6   IHHHHHHMKVFVIGAGLMGRGIAIAIA-SKHEVVLQDVSEKALEAAREQIPEEL------ 58

Query: 274 KKMSALDRDRYLASLVGTLSYDPFKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVAT 333
                      L+ +  T + +  K+ D+V+EAVFED+N K +V++E+E +   +  + +
Sbjct: 59  -----------LSKIEFTTTLEKVKDCDIVMEAVFEDLNTKVEVLREVERLT--NAPLCS 105

Query: 334 NTSAIPITKIAAASKRPDKVRNM 356
           NTS I +  IA     P +   +
Sbjct: 106 NTSVISVDDIAERLDSPSRFLGV 128

>2w3p_A Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ring cleaving, burkholderia xenovorans LB400 crotonase; 1.50A {Burkholderia xenovorans} Length = 556

 Score =  119 bits (299), Expect = 5e-30
 Identities = 39/204 (19%), Positives = 78/204 (38%), Gaps = 13/204 (6%)

Query: 10  VALACHYRIVVKDKKTGLGLPEV-MLGLLPGAGGTQRLPKLTALP--NVLDMTLTGKTLK 66
           +ALAC    +V D+ + + LPEV +LG+LPG GG  R+     +            + ++
Sbjct: 147 LALACDEIYLVDDRSSSVSLPEVPLLGVLPGTGGLTRVTDKRKVRHDRADIFCTVVEGVR 206

Query: 67  ADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDK 126
            ++AK   +VD++V+P     N  ++       E+A  +     +  + + R +      
Sbjct: 207 GERAKAWRLVDEVVKP-----NQFDQAIQARALELAAQSDRPAHAQGVPLTRIERTD--- 258

Query: 127 VLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAPLKILDVVRTGIEKGPSAGYEAEAEGF 186
             +  L ++ +   I    +             P  I  +V  G    P   +  E +  
Sbjct: 259 -REDGLTYKTLDVTIDRAKRIATFTAKAPQTEPPASIDAIVAAGANWWP-LKFAREFDDA 316

Query: 187 SQLAMTPQSKGLMGLFRAQTECKK 210
                T +      +FR + + + 
Sbjct: 317 ILSMRTNELAVGTWVFRTEGDARH 340

>2w3p_A Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ring cleaving, burkholderia xenovorans LB400 crotonase; 1.50A {Burkholderia xenovorans} Length = 556

 Score = 45.8 bits (108), Expect = 1e-05
 Identities = 19/86 (22%), Positives = 37/86 (43%), Gaps = 8/86 (9%)

Query: 6   SLATVALACHYRIVV-----KDKKTGLGLPEVMLGLLPGAGGTQRLP-KLTALPNVLDM- 58
           + A +A A     +      +D++  + L EV  GL P      RL  +       LD  
Sbjct: 391 TFAELAFAADRTYMAALPANEDEEPAITLSEVNFGLYPMVTHQSRLARRFYEETEPLDAV 450

Query: 59  -TLTGKTLKADKAKKMGIVDQLVEPL 83
            +  G+ +K  +A+++G+V    + +
Sbjct: 451 RSRIGQAIKPVEAERLGLVTASPDDI 476

>1sg4_A 3,2-trans-enoyl-COA isomerase, mitochondrial; crotonase fold; HET: CO8; 1.30A {Homo sapiens} SCOP: c.14.1.3 PDB: 1xx4_A Length = 260

 Score = 93.4 bits (233), Expect = 3e-22
 Identities = 28/130 (21%), Positives = 46/130 (35%), Gaps = 17/130 (13%)

Query: 10  VALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADK 69
           VAL C YRI+  + +  +GL E  LG++        L               G      +
Sbjct: 115 VALTCDYRILADNPRYCIGLNETQLGIIAPFWLKDTLENTIGHRAAERALQLGLLFPPAE 174

Query: 70  AKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLAS-GKLKINRTKPMI---PD 125
           A ++GIVDQ+V               E ++  A++  +Q  +        TK M+     
Sbjct: 175 ALQVGIVDQVVPE-------------EQVQSTALSAIAQWMAIPDHARQLTKAMMRKATA 221

Query: 126 KVLDVALKFE 135
             L      +
Sbjct: 222 SRLVTQRDAD 231

>3gkb_A Putative enoyl-COA hydratase; structural genomics, unknown function, PSI-2, protein struct initiative; 1.80A {Streptomyces avermitilis} Length = 287

 Score = 91.9 bits (229), Expect = 2e-21
 Identities = 29/126 (23%), Positives = 46/126 (36%), Gaps = 15/126 (11%)

Query: 11  ALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKA 70
             A        +   GLG  E ++G++PG GGTQ L         L++ LT     A+ A
Sbjct: 125 VAAADMAFAAAET-AGLGQIEALMGIIPGGGGTQYLRGRVGRNRALEVVLTADLFDAETA 183

Query: 71  KKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLAS-GKLKINRTKPMIPDKVLD 129
              G +++ +               + L+E     A  +A+     I   K  +P   L 
Sbjct: 184 ASYGWINRALPA-------------DELDEYVDRVARNIAALPDGVIEAAKRSLPADDLK 230

Query: 130 VALKFE 135
             L  E
Sbjct: 231 EGLLGE 236

>2ppy_A Enoyl-COA hydratase; beta-oxidation, fatty acid metabol lyase, structural genomics, NPPSFA; 2.16A {Geobacillus kaustophilus} Length = 265

 Score = 90.6 bits (226), Expect = 3e-21
 Identities = 45/126 (35%), Positives = 72/126 (57%), Gaps = 10/126 (7%)

Query: 10  VALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADK 69
           +ALAC  R +  D+   +GLPEV LG+L G GGTQRL +L      LDM +TG+T+   +
Sbjct: 119 MALACDLRFMG-DEAGKIGLPEVSLGVLAGTGGTQRLARLIGYSRALDMNITGETITPQE 177

Query: 70  AKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLD 129
           A ++G+V+++            ERT EY  ++A +    +++ KL I   K    +  L+
Sbjct: 178 ALEIGLVNRVFPQ-----AETRERTREYARKLANSATYAVSNIKLAIMNGK----EMPLN 228

Query: 130 VALKFE 135
           VA+++E
Sbjct: 229 VAIRYE 234

>3m6n_A RPFF protein; enoyl-COA hydratase, lyase; 1.80A {Xanthomonas campestris PV} PDB: 3m6m_A Length = 305

 Score = 90.9 bits (226), Expect = 5e-21
 Identities = 31/150 (20%), Positives = 60/150 (40%), Gaps = 18/150 (12%)

Query: 10  VALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADK 69
            AL+CH  I  +     +GLPEV+  L PG G    + +  +      + L G    A++
Sbjct: 158 AALSCHTIIAEEGVM--MGLPEVLFDLFPGMGAYSFMCQRISAHLAQKIMLEGNLYSAEQ 215

Query: 70  AKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVA-VNTASQLASGKLK--INRTKPMIPDK 126
              MG+VD++V         P  + +  +E+V   +  +  A   ++     T  +    
Sbjct: 216 LLGMGLVDRVV---------PRGQGVAAVEQVIRESKRTPHAWAAMQQVREMTTAV---- 262

Query: 127 VLDVALKFEFVRNQIFGKAKEKVMKMSGGL 156
            L+  ++   +      +  EK ++    L
Sbjct: 263 PLEEMMRITEIWVDTAMQLGEKSLRTMDRL 292

>3ot6_A Enoyl-COA hydratase/isomerase family protein; structural genomics, PSI-2, protein structure initiative; 2.50A {Pseudomonas syringae PV} Length = 232

 Score = 88.0 bits (219), Expect = 1e-20
 Identities = 21/125 (16%), Positives = 43/125 (34%), Gaps = 10/125 (8%)

Query: 11  ALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKA 70
            L+  YRI V    + +GL EV +G+     G +               +  +    + A
Sbjct: 113 LLSADYRIGVAGPFS-IGLNEVQIGMTMHHAGIELARDRLRKSAFNRSVINAEMFDPEGA 171

Query: 71  KKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDV 130
              G +D++V          +   +    ++     +     KLK+ +         LD 
Sbjct: 172 MAAGFLDKVVSV-----EELQGAALAVAAQLKKINMNAHKKTKLKVRKG----LLDTLDA 222

Query: 131 ALKFE 135
           A++ +
Sbjct: 223 AIEQD 227

>3h0u_A Putative enoyl-COA hydratase; structural genomics, isomerase, PSI-2, protein structure initiative; 1.50A {Streptomyces avermitilis} Length = 289

 Score = 89.2 bits (222), Expect = 2e-20
 Identities = 31/128 (24%), Positives = 50/128 (39%), Gaps = 17/128 (13%)

Query: 11  ALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKA 70
            LAC  R   ++    LG PEV +G  PGAG  Q L +L      L+  LT     AD A
Sbjct: 122 LLACDMRFASREN-AILGQPEVGIGAPPGAGAIQHLTRLLGRGRALEAVLTSSDFDADLA 180

Query: 71  KKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLAS-GKLKINRTKPMI--PDKV 127
           ++ G V++ V                 L+E     A++++   +  +   K  I      
Sbjct: 181 ERYGWVNRAVPD-------------AELDEFVAGIAARMSGFPRDALIAAKSAINAISLP 227

Query: 128 LDVALKFE 135
               ++ +
Sbjct: 228 APAEVRAD 235

>3r6h_A Enoyl-COA hydratase, ECHA3; ssgcid, mycobacerium marinum, structura genomics, seattle structural genomics center for infectious lyase; 1.75A {Mycobacterium marinum M} Length = 233

 Score = 87.7 bits (218), Expect = 2e-20
 Identities = 18/133 (13%), Positives = 34/133 (25%), Gaps = 27/133 (20%)

Query: 11  ALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKA 70
             +  +R+        +   EV +G+       + L                KT   + A
Sbjct: 114 LCSGDHRVAAHAYN--VQANEVAIGMTIPYAAMEVLKLRLTPSAYQQAAGLAKTFFGETA 171

Query: 71  KKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASG--------KLKINRTKPM 122
              G +D++  P             E +   A   A + A          KL+       
Sbjct: 172 LAAGFIDEISLP-------------EVVLSRAEEAAREFAGLNQQAHNATKLRARAE--- 215

Query: 123 IPDKVLDVALKFE 135
              K +   +   
Sbjct: 216 -ALKAIRAGIDGI 227

>1hzd_A AUH, AU-binding protein/enoyl-COA hydratase; RNA-binding protein,enoyl-COA hydratase, riken structural genomics/proteomics initiative, RSGI; 2.20A {Homo sapiens} SCOP: c.14.1.3 PDB: 2zqq_A 2zqr_A Length = 272

 Score = 88.0 bits (219), Expect = 3e-20
 Identities = 25/101 (24%), Positives = 47/101 (46%), Gaps = 11/101 (10%)

Query: 11  ALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKA 70
           ALAC  R+     K  +GL E  L ++PG GGTQRLP+   +    ++  + + L   +A
Sbjct: 124 ALACDIRVAASSAK--MGLVETKLAIIPGGGGTQRLPRAIGMSLAKELIFSARVLDGKEA 181

Query: 71  KKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLAS 111
           K +G++  ++          + +  +     A++ A +   
Sbjct: 182 KAVGLISHVL---------EQNQEGDAAYRKALDLAREFLP 213

>3pea_A Enoyl-COA hydratase/isomerase family protein; structural genomics, center for structural genomics of infec diseases, csgid; HET: FLC PG4; 1.82A {Bacillus anthracis} Length = 261

 Score = 86.4 bits (215), Expect = 1e-19
 Identities = 36/129 (27%), Positives = 56/129 (43%), Gaps = 19/129 (14%)

Query: 11  ALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKA 70
           A++CH R   +  K  LGLPE+ LGL+PG  GTQRLP+        +M LT   +   +A
Sbjct: 117 AMSCHMRFATESAK--LGLPELTLGLIPGFAGTQRLPRYVGKAKACEMMLTSTPITGAEA 174

Query: 71  KKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQ----LASGKLKINRTKPMIPDK 126
            K G+V+ +           EE  ++   +VA   A +      +    +  TK      
Sbjct: 175 LKWGLVNGVF---------AEETFLDDTLKVAKQIAGKSPATARAVLELLQTTK----SS 221

Query: 127 VLDVALKFE 135
                ++ E
Sbjct: 222 HYYEGVQRE 230

>3hin_A Putative 3-hydroxybutyryl-COA dehydratase; structural genomics, protein structure INI NEW YORK structural genomix research consortium; 2.00A {Rhodopseudomonas palustris} Length = 275

 Score = 86.1 bits (214), Expect = 2e-19
 Identities = 30/129 (23%), Positives = 46/129 (35%), Gaps = 19/129 (14%)

Query: 11  ALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKA 70
           A A H R+          LPE   G+  G GG+ RLP+L  +  + DM LTG+   A + 
Sbjct: 125 ACAAHIRVAEASAY--YALPEGSRGIFVGGGGSVRLPRLIGVARMADMMLTGRVYSAAEG 182

Query: 71  KKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLAS-GKLKINRTKPMIP---DK 126
              G    L+E                  + A+   +++A    L        +P   + 
Sbjct: 183 VVHGFSQYLIEN-------------GSAYDKALELGNRVAQNAPLTNFAVLQALPMIAEA 229

Query: 127 VLDVALKFE 135
                L  E
Sbjct: 230 NPQTGLLME 238

>1ef8_A Methylmalonyl COA decarboxylase; lyase; 1.85A {Escherichia coli} SCOP: c.14.1.3 PDB: 1ef9_A* Length = 261

 Score = 85.3 bits (212), Expect = 2e-19
 Identities = 23/137 (16%), Positives = 45/137 (32%), Gaps = 20/137 (14%)

Query: 11  ALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKA 70
            ++    I          +  V LG+     G   L +      V ++  T   + A +A
Sbjct: 115 IMSSDLIIAASTST--FSMTPVNLGVPYNLVGIHNLTRDAGFHIVKELIFTASPITAQRA 172

Query: 71  KKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLAS-GKLKINRTKPMI---PDK 126
             +GI++ +VE              E LE+  +  A  ++    L I   K  +    + 
Sbjct: 173 LAVGILNHVVEV-------------EELEDFTLQMAHHISEKAPLAIAVIKEELRVLGEA 219

Query: 127 VLDVALKFEFVRNQIFG 143
               + +FE     +  
Sbjct: 220 HTMNSDEFE-RIQGMRR 235

>2pbp_A Enoyl-COA hydratase subunit I; B-oxidation, structural genomics, NPPSFA, nationa on protein structural and functional analyses; 1.80A {Geobacillus kaustophilus} PDB: 2qq3_A Length = 258

 Score = 84.9 bits (211), Expect = 3e-19
 Identities = 36/101 (35%), Positives = 52/101 (51%), Gaps = 15/101 (14%)

Query: 11  ALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKA 70
           AL+C   +     +   G PEV LG++PGAGGTQRL KL      L+   TG  + A +A
Sbjct: 114 ALSCDLIVASSAAE--FGFPEVNLGVMPGAGGTQRLTKLIGPKRALEWLWTGARMSAKEA 171

Query: 71  KKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLAS 111
           +++GIV+++V P             E L E  +  A +LA 
Sbjct: 172 EQLGIVNRVVSP-------------ELLMEETMRLAGRLAE 199

>3kqf_A Enoyl-COA hydratase/isomerase family protein; IDP02329, structural genomic for structural genomics of infectious diseases, csgid; HET: MSE; 1.80A {Bacillus anthracis} Length = 265

 Score = 84.1 bits (209), Expect = 7e-19
 Identities = 36/101 (35%), Positives = 55/101 (54%), Gaps = 15/101 (14%)

Query: 11  ALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKA 70
           +LAC +RI  +     LGL E  L ++PGAGGTQRLP+L  +    ++  TG+ + A +A
Sbjct: 121 SLACDFRIAAESAS--LGLTETTLAIIPGAGGTQRLPRLIGVGRAKELIYTGRRISAQEA 178

Query: 71  KKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLAS 111
           K+ G+V+ +V                 LEE A+  A ++AS
Sbjct: 179 KEYGLVEFVVPV-------------HLLEEKAIEIAEKIAS 206

>4di1_A Enoyl-COA hydratase ECHA17; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis, ortholog; 2.25A {Mycobacterium marinum} Length = 277

 Score = 84.2 bits (209), Expect = 8e-19
 Identities = 25/102 (24%), Positives = 47/102 (46%), Gaps = 15/102 (14%)

Query: 11  ALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKA 70
           ALA  +R+   + K   G  E++ GL+PG GG  RL ++       ++  +G+   A++A
Sbjct: 134 ALAADWRVSGDNVK--FGATEILAGLIPGGGGMGRLTRVVGSSRAKELVFSGRFFDAEEA 191

Query: 71  KKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASG 112
             +G++D +V P             + + + AV  A +    
Sbjct: 192 LALGLIDDMVAP-------------DDVYDSAVAWARRYLEC 220

>1mj3_A Enoyl-COA hydratase, mitochondrial; homohexamer, lyase; HET: HXC; 2.10A {Rattus norvegicus} SCOP: c.14.1.3 PDB: 2dub_A* 1dub_A* 1ey3_A* 2hw5_A* Length = 260

 Score = 83.7 bits (208), Expect = 8e-19
 Identities = 36/129 (27%), Positives = 56/129 (43%), Gaps = 19/129 (14%)

Query: 11  ALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKA 70
           A+ C      +  +   G PE++LG +PGAGGTQRL +       ++M LTG  + A  A
Sbjct: 116 AMMCDIIYAGEKAQ--FGQPEILLGTIPGAGGTQRLTRAVGKSLAMEMVLTGDRISAQDA 173

Query: 71  KKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQ----LASGKLKINRTKPMIPDK 126
           K+ G+V ++          P E  +E   + A   A+     +A  K  +N       + 
Sbjct: 174 KQAGLVSKIF---------PVETLVEEAIQCAEKIANNSKIIVAMAKESVNAAF----EM 220

Query: 127 VLDVALKFE 135
            L    K E
Sbjct: 221 TLTEGNKLE 229

>3h81_A Enoyl-COA hydratase ECHA8; niaid, decode, infectious disease, MPCS, fatty acid metaboli metabolism, lyase, structural genomics; 1.80A {Mycobacterium tuberculosis} PDB: 3q0j_A* 3pzk_A 3q0g_A* Length = 278

 Score = 83.0 bits (206), Expect = 2e-18
 Identities = 31/101 (30%), Positives = 50/101 (49%), Gaps = 15/101 (14%)

Query: 11  ALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKA 70
           A+ C   I     K   G PE+ LG+LPG GG+QRL +       +D+ LTG+T+ A +A
Sbjct: 134 AMMCDVLIAADTAK--FGQPEIKLGVLPGMGGSQRLTRAIGKAKAMDLILTGRTMDAAEA 191

Query: 71  KKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLAS 111
           ++ G+V ++V               + L   A  TA+ ++ 
Sbjct: 192 ERSGLVSRVVPA-------------DDLLTEARATATTISQ 219

>3he2_A Enoyl-COA hydratase ECHA6; fatty acid metabolism, lipid metabolism, lyase, structural genomics; HET: PGE; 2.30A {Mycobacterium tuberculosis} Length = 264

 Score = 82.2 bits (204), Expect = 3e-18
 Identities = 22/125 (17%), Positives = 38/125 (30%), Gaps = 17/125 (13%)

Query: 11  ALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKA 70
           A+ C  R+V  D       P    GL       +RL  L        M L+ + L A+ A
Sbjct: 126 AMQCDLRVVAPDAF--FQFPTSKYGLALDNWSIRRLSSLVGHGRARAMLLSAEKLTAEIA 183

Query: 71  KKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDV 130
              G+ +++                 +  E+A      +   K  +N          ++ 
Sbjct: 184 LHTGMANRIG---------TLADAQAWAAEIARLAPLAIQHAKRVLNDDGA------IEE 228

Query: 131 ALKFE 135
           A    
Sbjct: 229 AWPAH 233

>3moy_A Probable enoyl-COA hydratase; ssgcid, seattle structural genomics center for infectious DI enoyl COA, actinobacteria, lyase; 1.50A {Mycobacterium smegmatis} Length = 263

 Score = 82.2 bits (204), Expect = 3e-18
 Identities = 36/129 (27%), Positives = 61/129 (47%), Gaps = 19/129 (14%)

Query: 11  ALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKA 70
           A+ C   I     +   G PE+ LG+LPG GGTQRL +       +D+ LTG++L A++A
Sbjct: 119 AMLCDLVIAADTAR--FGQPEITLGILPGLGGTQRLTRAVGKAKAMDLCLTGRSLTAEEA 176

Query: 71  KKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQ----LASGKLKINRTKPMIPDK 126
           +++G+V ++V         P    ++    VA   A        + K  IN       ++
Sbjct: 177 ERVGLVSRIV---------PAADLLDEALAVAQRIARMSRPAGRAVKDAINEAF----ER 223

Query: 127 VLDVALKFE 135
            L   +++E
Sbjct: 224 PLSAGMRYE 232

>1szo_A 6-oxocamphor hydrolase; enzyme-product complex; HET: CAX; 1.90A {Rhodococcus SP} SCOP: c.14.1.3 PDB: 1o8u_A Length = 257

 Score = 79.2 bits (196), Expect = 4e-17
 Identities = 22/136 (16%), Positives = 41/136 (30%), Gaps = 22/136 (16%)

Query: 8   ATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKA 67
             + +     +  +        P    G++PG G     P +          LTG+ L A
Sbjct: 123 PEIPVMSDIVLAAESATFQ-DGPHFPSGIVPGDGAHVVWPHVLGSNRGRYFLLTGQELDA 181

Query: 68  DKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASG--------KLKINRT 119
             A   G V++++               + L   A   A  +A          +  + R 
Sbjct: 182 RTALDYGAVNEVLSE-------------QELLPRAWELARGIAEKPLLARRYARKVLTRQ 228

Query: 120 KPMIPDKVLDVALKFE 135
              + +  L + L  E
Sbjct: 229 LRRVMEADLSLGLAHE 244

>3pe8_A Enoyl-COA hydratase; emerald biostructures, structural genomics, seattle structur genomics center for infectious disease, ssgcid, lyase; 1.60A {Mycobacterium smegmatis} PDB: 3p85_A* 3qyr_A Length = 256

 Score = 78.8 bits (195), Expect = 5e-17
 Identities = 31/139 (22%), Positives = 53/139 (38%), Gaps = 19/139 (13%)

Query: 11  ALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKA 70
           AL C   I  ++ K         +GL+P  G + RLP+   +     M+LTG  L A  A
Sbjct: 111 ALYCDILIASENAK--FADTHARVGLMPTWGLSVRLPQKVGVGLARRMSLTGDYLSAQDA 168

Query: 71  KKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTA--SQLASGKLK--INRTKPMIPDK 126
            + G+V ++V           +  +     VA +    +Q A   L    +R   +    
Sbjct: 169 LRAGLVTEVV---------AHDDLLTAARRVAASIVGNNQKAVRALLDSYHRIDAL---- 215

Query: 127 VLDVALKFEFVRNQIFGKA 145
               AL  E    + + ++
Sbjct: 216 QTGGALWAEAEAARQWMRS 234

>2j5i_A P-hydroxycinnamoyl COA hydratase/lyase; vanillin, aldolase, crotonase, coenzyme-A; 1.8A {Pseudomonas fluorescens} PDB: 2j5i_B 2vss_A* 2j5i_I 2vss_F* 2vsu_A* 2vss_E* 2vsu_F* 2vsu_E* 2vsu_C* Length = 276

 Score = 78.8 bits (195), Expect = 6e-17
 Identities = 27/141 (19%), Positives = 46/141 (32%), Gaps = 27/141 (19%)

Query: 11  ALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKA 70
            +AC   I   +     GL E+  G+ PG   ++ +         L   +TGKT    KA
Sbjct: 125 LVACDLAICADEAT--FGLSEINWGIPPGNLVSKAMADTVGHRQSLMYIMTGKTFGGQKA 182

Query: 71  KKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASG--------KLKINRTKPM 122
            +MG+V++ V                 L EV +  A  L           K    R +  
Sbjct: 183 AEMGLVNESVPL-------------AQLREVTIELARNLLEKNPVVLRAAKHGFKRCR-- 227

Query: 123 IPDKVLDVALKFEFVRNQIFG 143
             +   +    + + +     
Sbjct: 228 --ELTWEQNEDYLYAKLDQSR 246

>3swx_A Probable enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.10A {Mycobacterium abscessus} Length = 265

 Score = 78.3 bits (194), Expect = 8e-17
 Identities = 25/101 (24%), Positives = 37/101 (36%), Gaps = 15/101 (14%)

Query: 11  ALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKA 70
           ALA    I  +         EV  G+ P  G T R P+     N +   LT  T  A +A
Sbjct: 121 ALAADIVIADETAT--FAQLEVNRGIYPFGGATIRFPRTAGWGNAMRWMLTADTFDAVEA 178

Query: 71  KKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLAS 111
            ++GIV ++V                   + A+  A  +A 
Sbjct: 179 HRIGIVQEIVPV-------------GEHVDTAIAIAQTIAR 206

>2q35_A CURF; crotonase, lyase; 1.65A {Lyngbya majuscula} PDB: 2q34_A 2q2x_A Length = 243

 Score = 78.0 bits (193), Expect = 8e-17
 Identities = 12/102 (11%), Positives = 29/102 (28%), Gaps = 15/102 (14%)

Query: 11  ALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKA 70
            L   + +  ++         +  G  P    +  L +        +M  TG+  +  + 
Sbjct: 109 GLYADFVVFSQESV--YATNFMKYGFTPVGATSLILREKLGSELAQEMIYTGENYRGKEL 166

Query: 71  KKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASG 112
            + GI   +V               + +   A     ++A  
Sbjct: 167 AERGIPFPVVSR-------------QDVLNYAQQLGQKIAKS 195

>3qxz_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.35A {Mycobacterium abscessus} Length = 265

 Score = 78.4 bits (194), Expect = 8e-17
 Identities = 22/99 (22%), Positives = 43/99 (43%), Gaps = 7/99 (7%)

Query: 8   ATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKA 67
            T+AL    RI+ ++ +    +P+V  G+ P A     LP+L       ++ LTG +  A
Sbjct: 114 MTLALHADIRILAEEGR--YAIPQVRFGVAPDALAHWTLPRLVGTAVAAELLLTGASFSA 171

Query: 68  DKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTA 106
            +A + G+ ++ +              +    ++A N A
Sbjct: 172 QRAVETGLANRCLPA-----GKVLGAALRMAHDIATNVA 205

>3lao_A Enoyl-COA hydratase/isomerase; alpha-beta sandwich, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.40A {Pseudomonas aeruginosa} Length = 258

 Score = 78.0 bits (193), Expect = 9e-17
 Identities = 30/125 (24%), Positives = 51/125 (40%), Gaps = 11/125 (8%)

Query: 11  ALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKA 70
            L     +  +  +      EV+ G+ P  G T R P+     + +   LTG    AD+A
Sbjct: 124 MLNADIAVAARGTR--FAHLEVLRGIPPLGGSTVRFPRAAGWTDAMRYILTGDEFDADEA 181

Query: 71  KKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDV 130
            +M ++ ++VEP G  L     R +EY E +A      + +      + +    D+  D 
Sbjct: 182 LRMRLLTEVVEP-GEEL----ARALEYAERIARAAPLAVRAALQSAFQGR----DEGDDA 232

Query: 131 ALKFE 135
           AL   
Sbjct: 233 ALSRV 237

>3lke_A Enoyl-COA hydratase; nysgrc, target 11251J, structural genomics, PSI-2, protein structure initiative; 1.70A {Bacillus halodurans} Length = 263

 Score = 78.0 bits (193), Expect = 1e-16
 Identities = 21/105 (20%), Positives = 45/105 (42%), Gaps = 14/105 (13%)

Query: 8   ATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKA 67
             + LAC  RI ++  K         +G+ P  G +  LP++      +++ L GK   +
Sbjct: 117 FNMMLACDRRIALRRAK--FLENFHKMGISPDLGASYFLPRIIGYEQTMNLLLEGKLFTS 174

Query: 68  DKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASG 112
           ++A ++G++ ++ E              + L+E   N    ++ G
Sbjct: 175 EEALRLGLIQEICENK------------QELQERVKNYLKAVSEG 207

>2j5g_A ALR4455 protein; enzyme evolution, C-C bond hydrolase, hydrolase, lyase, crotonase, biocatalysis, beta-diketone; 1.46A {Anabaena SP} PDB: 2j5s_A* 2j5g_D Length = 263

 Score = 76.9 bits (190), Expect = 3e-16
 Identities = 19/103 (18%), Positives = 34/103 (33%), Gaps = 14/103 (13%)

Query: 10  VALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADK 69
             L     +  ++      +P +  G++PG G     P    L        T + L A +
Sbjct: 134 YILTTDIILASENTVFQ-DMPHLNAGIVPGDGVHILWPLALGLYRGRYFLFTQEKLTAQQ 192

Query: 70  AKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASG 112
           A ++ +V +++                 L E A   A  LA  
Sbjct: 193 AYELNVVHEVLPQ-------------SKLMERAWEIARTLAKQ 222

>3rsi_A Putative enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.00A {Mycobacterium abscessus} Length = 265

 Score = 76.8 bits (190), Expect = 3e-16
 Identities = 26/101 (25%), Positives = 40/101 (39%), Gaps = 15/101 (14%)

Query: 11  ALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKA 70
                 R+  +      GLPEV  GL+PGAG   RL +       ++M LTG+ L A +A
Sbjct: 121 LQQTDIRVSDEHAT--FGLPEVQRGLVPGAGSMVRLKRQIPYTKAMEMILTGEPLTAFEA 178

Query: 71  KKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLAS 111
              G+V  +V                   + A + A ++  
Sbjct: 179 YHFGLVGHVVPA-------------GTALDKARSLADRIVR 206

>3qmj_A Enoyl-COA hydratase, ECHA8_6; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.20A {Mycobacterium marinum} Length = 256

 Score = 76.0 bits (188), Expect = 5e-16
 Identities = 24/105 (22%), Positives = 42/105 (40%), Gaps = 15/105 (14%)

Query: 8   ATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKA 67
           AT+        +    +  L  P   LG+ P A  +  LP+L    N   + ++ + + A
Sbjct: 115 ATILGYADLAFMSSTAR--LKCPFTSLGVAPEAASSYLLPQLVGRQNAAWLLMSSEWIDA 172

Query: 68  DKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASG 112
           ++A +MG+V ++  P             E L   A   A  LA+ 
Sbjct: 173 EEALRMGLVWRICSP-------------EELLPEARRHAEILAAK 204

>3fdu_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2; 2.00A {Acinetobacter baumannii} Length = 266

 Score = 76.1 bits (188), Expect = 5e-16
 Identities = 24/105 (22%), Positives = 36/105 (34%), Gaps = 17/105 (16%)

Query: 8   ATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKA 67
            T+ L                +P V LGL P  G +Q L K        ++  T K   A
Sbjct: 115 VTILLQADLVFADNTAL--FQIPFVSLGLSPEGGASQLLVKQAGYHKAAELLFTAKKFNA 172

Query: 68  DKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASG 112
           + A + G+V+++VE                    A  TA  L + 
Sbjct: 173 ETALQAGLVNEIVED---------------AYATAQATAQHLTAL 202

>3r9t_A ECHA1_1; ssgcid, seattle structural genomics center for infectious DI enoyl-COA hydratase, lyase; 1.75A {Mycobacterium avium subsp} PDB: 3r9s_A 3r0o_A Length = 267

 Score = 76.0 bits (188), Expect = 6e-16
 Identities = 26/101 (25%), Positives = 45/101 (44%), Gaps = 15/101 (14%)

Query: 11  ALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKA 70
           ALA    +  +  +   GLPEV  GL+  AGG  R+ +       + + LTG+ L A  A
Sbjct: 120 ALASDLVVADERAQ--FGLPEVKRGLIAAAGGVFRIAEQLPRKVAMRLLLTGEPLSAAAA 177

Query: 71  KKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLAS 111
           +  G+++++VE                + + A+  AS +  
Sbjct: 178 RDWGLINEVVEA-------------GSVLDAALALASAITV 205

>3r9q_A Enoyl-COA hydratase/isomerase; ssgcid, lyase,isomerase; 2.10A {Mycobacterium abscessus} PDB: 3qka_A Length = 262

 Score = 75.7 bits (187), Expect = 6e-16
 Identities = 34/126 (26%), Positives = 55/126 (43%), Gaps = 11/126 (8%)

Query: 11  ALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKA 70
           AL C  R+V +D    LG+     G+    GGT RLP+L      +D+ LTG+ + A++A
Sbjct: 120 ALWCDLRVVEEDAV--LGVFCRRWGVPLIDGGTIRLPRLIGHSRAMDLILTGRPVHANEA 177

Query: 71  KKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDV 130
             +G+V+++V   G       E       E+A      + + +        M      + 
Sbjct: 178 LDIGLVNRVVAR-GQAR----EAAETLAAEIAAFPQQCVRADRDSAIAQWGM----AEEA 228

Query: 131 ALKFEF 136
           AL  EF
Sbjct: 229 ALDNEF 234

>3rrv_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.45A {Mycobacterium avium subsp} Length = 276

 Score = 76.1 bits (188), Expect = 6e-16
 Identities = 19/128 (14%), Positives = 47/128 (36%), Gaps = 13/128 (10%)

Query: 8   ATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKA 67
            ++        + ++    L  P V +GL+   GG    P   +L    +  LTG  + A
Sbjct: 138 CSLVALSDIVYIAENAY--LADPHVQVGLVAADGGPLTWPLHISLLLAKEYALTGTRISA 195

Query: 68  DKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKV 127
            +A ++G+ + + +             +   +++       + S K  +N       ++ 
Sbjct: 196 QRAVELGLANHVADDP-------VAEAIACAKKILELPQQAVESTKRVLNIH----LERA 244

Query: 128 LDVALKFE 135
           +  +L + 
Sbjct: 245 VLASLDYA 252

>3qxi_A Enoyl-COA hydratase ECHA1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.20A {Mycobacterium marinum} Length = 265

 Score = 75.3 bits (186), Expect = 9e-16
 Identities = 29/101 (28%), Positives = 49/101 (48%), Gaps = 15/101 (14%)

Query: 11  ALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKA 70
           ALA    ++V  + +  G+PEV  GL+ G GG  RLP+       +++ LTG  L A++A
Sbjct: 121 ALATD--LIVAARDSAFGIPEVKRGLVAGGGGLLRLPERIPYAIAMELALTGDNLSAERA 178

Query: 71  KKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLAS 111
             +G+V+ L EP                 + A+  A ++ +
Sbjct: 179 HALGMVNVLAEP-------------GAALDAAIALAEKITA 206

>2gtr_A CDY-like, chromodomain Y-like protein; structural genomics, structural genomics consortium, SGC, unknown function; 1.90A {Homo sapiens} PDB: 2fw2_A Length = 261

 Score = 75.3 bits (186), Expect = 9e-16
 Identities = 21/105 (20%), Positives = 35/105 (33%), Gaps = 15/105 (14%)

Query: 8   ATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKA 67
           A++   C      +        P    G  P    T   PK+    +  +M L+G+ L A
Sbjct: 117 ASILPLCDVVWANEKAW--FQTPYTTFGQSPDGCSTVMFPKIMGGASANEMLLSGRKLTA 174

Query: 68  DKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASG 112
            +A   G+V Q+  P                 +  +    +LAS 
Sbjct: 175 QEACGKGLVSQVFWP-------------GTFTQEVMVRIKELASC 206

>1dci_A Dienoyl-COA isomerase; lyase; 1.50A {Rattus norvegicus} SCOP: c.14.1.3 PDB: 2vre_A Length = 275

 Score = 75.3 bits (186), Expect = 9e-16
 Identities = 29/130 (22%), Positives = 54/130 (41%), Gaps = 19/130 (14%)

Query: 11  ALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPN-VLDMTLTGKTLKADK 69
             AC  R   +D      + EV +GL    G  QRLPK+    + V ++T T + + AD+
Sbjct: 126 ISACDIRYCTQDAF--FQVKEVDVGLAADVGTLQRLPKVIGNRSLVNELTFTARKMMADE 183

Query: 70  AKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLAS-GKLKINRTKPMI---PD 125
           A   G+V ++                + +   A   A+ ++S   + +  +K  +    D
Sbjct: 184 ALDSGLVSRVFP------------DKDVMLNAAFALAADISSKSPVAVQGSKINLIYSRD 231

Query: 126 KVLDVALKFE 135
             +D +L + 
Sbjct: 232 HSVDESLDYM 241

>3qk8_A Enoyl-COA hydratase ECHA15; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 1.60A {Mycobacterium marinum M} PDB: 3q1t_A Length = 272

 Score = 75.3 bits (186), Expect = 1e-15
 Identities = 22/105 (20%), Positives = 36/105 (34%), Gaps = 15/105 (14%)

Query: 8   ATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKA 67
             VAL     +     K  +      LG+  G       P L  +       LT +TL  
Sbjct: 123 LVVALLADISVASATAK--IIDGHTKLGVAAGDHAAICWPLLVGMAKAKYYLLTCETLSG 180

Query: 68  DKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASG 112
           ++A+++G+V   V+              + +   A   A  LA G
Sbjct: 181 EEAERIGLVSTCVDD-------------DEVLPTATRLAENLAQG 212

>3trr_A Probable enoyl-COA hydratase/isomerase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.09A {Mycobacterium abscessus} Length = 256

 Score = 74.8 bits (185), Expect = 1e-15
 Identities = 28/101 (27%), Positives = 49/101 (48%), Gaps = 15/101 (14%)

Query: 11  ALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKA 70
            L+C   +VV  +    G+PEV  GL+ GAGG  RLP        +++ LTG++  A+ A
Sbjct: 112 VLSCD--LVVAGRSAKFGIPEVKRGLVAGAGGLLRLPNRIPYQVAMELALTGESFTAEDA 169

Query: 71  KKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLAS 111
            K G +++LV+                  + A+  A+++ +
Sbjct: 170 AKYGFINRLVDD-------------GQALDTALELAAKITA 197

>2a7k_A CARB; crotonase, antibiotic, beta-lactam, biosynthetic protein; 2.24A {Pectobacterium carotovorum} SCOP: c.14.1.3 PDB: 2a81_A* Length = 250

 Score = 74.5 bits (184), Expect = 1e-15
 Identities = 19/102 (18%), Positives = 36/102 (35%), Gaps = 16/102 (15%)

Query: 11  ALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKA 70
           AL    R++         +PE+  G+    G    L        + ++    ++L A + 
Sbjct: 113 ALMFDQRLMASTAN--FVMPELKHGIGCSVGAAI-LGFTHGFSTMQEIIYQCQSLDAPRC 169

Query: 71  KKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASG 112
               +V+Q+VE                L + A+  A  +AS 
Sbjct: 170 VDYRLVNQVVES-------------SALLDAAITQAHVMASY 198

>2ej5_A Enoyl-COA hydratase subunit II; structural genomics, GK2038, NPPSFA, national project on prote structural and functional analyses; 2.00A {Geobacillus kaustophilus} Length = 257

 Score = 74.5 bits (184), Expect = 1e-15
 Identities = 22/105 (20%), Positives = 47/105 (44%), Gaps = 15/105 (14%)

Query: 8   ATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKA 67
            ++ALAC +R++ +          + +GL+P AG    LP+L      L++ + G+ + A
Sbjct: 110 MSLALACDFRLLSEKAS--FAPAFIHVGLVPDAGHLYYLPRLVGRAKALELAVLGEKVTA 167

Query: 68  DKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASG 112
           ++A  +G+  +++                  EE     A +L++ 
Sbjct: 168 EEAAALGLATKVIPL-------------SDWEEEVKQFAERLSAM 199

>4f47_A Enoyl-COA hydratase ECHA19; ssgcid, seattle structural genomics center for infectious DI niaid; 1.75A {Mycobacterium marinum} Length = 278

 Score = 74.9 bits (185), Expect = 2e-15
 Identities = 23/101 (22%), Positives = 37/101 (36%), Gaps = 15/101 (14%)

Query: 11  ALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKA 70
                 R+  +  K   G+ E    L P  G   RL +        D+ LTG+ + A +A
Sbjct: 134 LQGTDIRVAAESAK--FGISEAKWSLYPMGGSAVRLVRQIPYTVACDLLLTGRHITAAEA 191

Query: 71  KKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLAS 111
           K+MG+V  +V                     A+  A  +A+
Sbjct: 192 KEMGLVGHVVPD-------------GQALTKALEIAEIIAA 219

>1wz8_A Enoyl-COA hydratase; lyase, crotonase, hexamer, structural genomics, riken S genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.14.1.3 Length = 264

 Score = 74.5 bits (184), Expect = 2e-15
 Identities = 25/105 (23%), Positives = 41/105 (39%), Gaps = 15/105 (14%)

Query: 8   ATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKA 67
             +ALA    +V K  +  L    + LG+  G       P L  +       L  + L  
Sbjct: 120 LALALAADIAVVGKGTR--LLDGHLRLGVAAGDHAVLLWPLLVGMAKAKYHLLLNEPLTG 177

Query: 68  DKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASG 112
           ++A+++G+V   VE              E + E A+  A +LA G
Sbjct: 178 EEAERLGLVALAVED-------------EKVYEKALEVAERLAQG 209

>3qre_A Enoyl-COA hydratase, ECHA12_1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.40A {Mycobacterium marinum M} Length = 298

 Score = 73.9 bits (182), Expect = 5e-15
 Identities = 29/99 (29%), Positives = 47/99 (47%), Gaps = 7/99 (7%)

Query: 8   ATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKA 67
            T AL C  R      K          GL+   G +  LP+LT+    LD+ L+G+T  A
Sbjct: 146 LTQALMCDVRFAAAGAK--FAAVFARRGLIAEFGISWILPRLTSWAVALDLLLSGRTFLA 203

Query: 68  DKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTA 106
           ++A ++G+V ++V P          R +EY E++A   +
Sbjct: 204 EEAAQLGLVKEVVTP-----EQLMPRALEYAEDIARYCS 237

>1nzy_A Dehalogenase, 4-chlorobenzoyl coenzyme A dehalogenase; lyase; HET: BCA; 1.80A {Pseudomonas SP} SCOP: c.14.1.3 PDB: 1jxz_A* 1nzy_B* Length = 269

 Score = 73.0 bits (180), Expect = 6e-15
 Identities = 20/105 (19%), Positives = 40/105 (38%), Gaps = 15/105 (14%)

Query: 8   ATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKA 67
             ++LA    I     K         +G+      +  L ++  +   +++ LT +TL  
Sbjct: 116 LGISLASDMAICADSAK--FVCAWHTIGIGNDTATSYSLARIVGMRRAMELMLTNRTLYP 173

Query: 68  DKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASG 112
           ++AK  G+V ++                +   EVA   A +LA+ 
Sbjct: 174 EEAKDWGLVSRVYPK-------------DEFREVAWKVARELAAA 205

>2np9_A DPGC; protein inhibitor complex, oxidoreductase; HET: YE1; 2.45A {Streptomyces toyocaensis} PDB: 2pg8_A* Length = 440

 Score = 74.1 bits (182), Expect = 9e-15
 Identities = 19/102 (18%), Positives = 36/102 (35%), Gaps = 16/102 (15%)

Query: 11  ALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKA 70
            L     +   D      LP    G++PG     RL +         + L G+ + A + 
Sbjct: 303 LLVFDRVLASSDAY--FSLPAAKEGIIPG-AANLRLGRFAGPRVSRQVILEGRRIWAKEP 359

Query: 71  KKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASG 112
           +   +VD++VEP             + L+     + ++L   
Sbjct: 360 EARLLVDEVVEP-------------DELDAAIERSLTRLDGD 388

>2fbm_A Y chromosome chromodomain protein 1, telomeric IS; acetyltransferase, structural genomics, structural genomics consortium, SGC, unknown function; 2.28A {Homo sapiens} SCOP: c.14.1.3 Length = 291

 Score = 72.7 bits (179), Expect = 1e-14
 Identities = 18/105 (17%), Positives = 33/105 (31%), Gaps = 15/105 (14%)

Query: 8   ATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKA 67
           A++   C      +        P    G  P    +   PK+    +  +M + G+ L A
Sbjct: 135 ASILPLCDLVWANEKAW--FQTPYTTFGQSPDGCSSITFPKMMGKASANEMLIAGRKLTA 192

Query: 68  DKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASG 112
            +A   G+V Q+                    +  +    +LAS 
Sbjct: 193 REACAKGLVSQVFLT-------------GTFTQEVMIQIKELASY 224

>1pjh_A Enoyl-COA isomerase; ECI1P; beta-BETA-alpha spiral fold, inter-trimer contacts; 2.10A {Saccharomyces cerevisiae} SCOP: c.14.1.3 PDB: 1hno_A 1k39_A* 1hnu_A Length = 280

 Score = 72.0 bits (177), Expect = 2e-14
 Identities = 23/152 (15%), Positives = 44/152 (28%), Gaps = 15/152 (9%)

Query: 8   ATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKA 67
           A +   C     + DK   L  P   LGL+   G T  LP         +  +  K  K 
Sbjct: 128 AALVALCDIVYSINDKVY-LLYPFANLGLITEGGTTVSLPLKFGTNTTYECLMFNKPFKY 186

Query: 68  DKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLK-INRTKPMI--- 123
           D   + G + +           P      +  +V      ++    L      K ++   
Sbjct: 187 DIMCENGFISKNFNM-------PSSNAEAFNAKVLEELREKVKGLYLPSCLGMKKLLKSN 239

Query: 124 PDKVLDVALKFEFVRNQIFGK---AKEKVMKM 152
                + A   E   +  +       ++  ++
Sbjct: 240 HIDAFNKANSVEVNESLKYWVDGEPLKRFRQL 271

>3p5m_A Enoyl-COA hydratase/isomerase; seattle structural genomics center for infectious disease, S coenzyme A, tuberculosis; 2.05A {Mycobacterium avium} Length = 255

 Score = 70.3 bits (173), Expect = 4e-14
 Identities = 20/105 (19%), Positives = 37/105 (35%), Gaps = 15/105 (14%)

Query: 8   ATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKA 67
            ++ALAC   +          L    +GL+P  G +  LP L        M +T + + A
Sbjct: 108 CSLALACDLVVAAPASY--FQLAFTRVGLMPDGGASALLPLLIGRARTSRMAMTAEKISA 165

Query: 68  DKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASG 112
             A + G++  +                +  E V  +    ++ G
Sbjct: 166 ATAFEWGMISHITSA-------------DEYESVLTDVLRSVSGG 197

>3isa_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2, protein structure initiative, EN hydratase; 1.76A {Bordetella parapertussis} Length = 254

 Score = 70.3 bits (173), Expect = 5e-14
 Identities = 19/126 (15%), Positives = 36/126 (28%), Gaps = 14/126 (11%)

Query: 11  ALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKA 70
             AC +R    +      +P +  GL+ G   T+R   +      L +  + +   AD+A
Sbjct: 117 FAACKWRYCTPEAG--FRMPGLKFGLVLG---TRRFRDIVGADQALSILGSARAFDADEA 171

Query: 71  KKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDV 130
           +++G V                      E       +  A+    +              
Sbjct: 172 RRIGFVRDCAAQ-----AQWPALIDAAAEAATALDPATRATLHRVLRDDHDDA----DLA 222

Query: 131 ALKFEF 136
           AL    
Sbjct: 223 ALARSA 228

>1uiy_A Enoyl-COA hydratase; lyase, beta-oxidation, crotonase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.85A {Thermus thermophilus} SCOP: c.14.1.3 Length = 253

 Score = 69.9 bits (172), Expect = 7e-14
 Identities = 28/129 (21%), Positives = 54/129 (41%), Gaps = 20/129 (15%)

Query: 11  ALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKA 70
           ALAC   ++ ++ +  LG  EV +G +     +  L +        D+ LTG+ ++A +A
Sbjct: 113 ALACDLVVMDEEAR--LGYTEVKIGFVAA-LVSVILVRAVGEKAAKDLLLTGRLVEAREA 169

Query: 71  KKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLAS-GKLKINRTKPMI---PDK 126
           K +G+V+++  P                 E A   A ++A      +  TK ++   P  
Sbjct: 170 KALGLVNRIAPP-------------GKALEEAKALAEEVAKNAPTSLRLTKELLLALPGM 216

Query: 127 VLDVALKFE 135
            L+   +  
Sbjct: 217 GLEDGFRLA 225

>3sll_A Probable enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.35A {Mycobacterium abscessus} Length = 290

 Score = 69.6 bits (171), Expect = 1e-13
 Identities = 25/103 (24%), Positives = 41/103 (39%), Gaps = 16/103 (15%)

Query: 11  ALACHYRIVVKDKKTGLGLPEVMLGLLPG-AGGTQRLPKLTALPNVLDMTLTGKTLKADK 69
           ALAC  R+  +D         +  GL     G +  LP+        D+ LTG+ + AD+
Sbjct: 142 ALACDVRVASQDAY--FRAAGINNGLTASELGLSYLLPRAIGTSRASDIMLTGRDVDADE 199

Query: 70  AKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASG 112
           A+++G+V + V               E L E       ++A  
Sbjct: 200 AERIGLVSRKVAS-------------ESLLEECYAIGERIAGF 229

>3t8b_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily, lyase; 1.65A {Mycobacterium tuberculosis} PDB: 3t8a_A 1rjm_A* 1rjn_A* 1q52_A 1q51_A Length = 334

 Score = 69.1 bits (169), Expect = 3e-13
 Identities = 16/101 (15%), Positives = 37/101 (36%), Gaps = 14/101 (13%)

Query: 11  ALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKA 70
            + C   +  ++        +  +G   G  G+  L +        ++   G+T  A++ 
Sbjct: 186 HVVCDLTLASREYAR-FKQTDADVGSFDGGYGSAYLARQVGQKFAREIFFLGRTYTAEQM 244

Query: 71  KKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLAS 111
            +MG V+ + E                LE V +  A+++ +
Sbjct: 245 HQMGAVNAVAEH-------------AELETVGLQWAAEINA 272

>2f6q_A Peroxisomal 3,2-trans-enoyl-COA isomerase; peroxisomes, fatty acid metabolism, STR genomics, structural genomics consortium, SGC; 1.95A {Homo sapiens} SCOP: c.14.1.3 Length = 280

 Score = 68.0 bits (167), Expect = 3e-13
 Identities = 21/122 (17%), Positives = 38/122 (31%), Gaps = 7/122 (5%)

Query: 8   ATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKA 67
            T+                   P   LG  P    +   PK+ +     +M + GK L A
Sbjct: 137 VTLLGLFDAVYASDRAT--FHTPFSHLGQSPEGCSSYTFPKIMSPAKATEMLIFGKKLTA 194

Query: 68  DKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKV 127
            +A   G+V ++        +  ++     L+  A    + L   K  I + +      V
Sbjct: 195 GEACAQGLVTEVFPD-----STFQKEVWTRLKAFAKLPPNALRISKEVIRKREREKLHAV 249

Query: 128 LD 129
             
Sbjct: 250 NA 251

>2uzf_A Naphthoate synthase; lyase, menaquinone biosynthesis; HET: CAA; 2.9A {Staphylococcus aureus} Length = 273

 Score = 68.0 bits (167), Expect = 3e-13
 Identities = 15/101 (14%), Positives = 32/101 (31%), Gaps = 15/101 (14%)

Query: 11  ALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKA 70
            + C   I   +     G     +G      G+  L ++       ++    +   A +A
Sbjct: 126 NVVCDLTIAADNAI--FGQTGPKVGSFDAGYGSGYLARIVGHKKAREIWYLCRQYNAQEA 183

Query: 71  KKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLAS 111
             MG+V+ +V               E +E+  V    ++  
Sbjct: 184 LDMGLVNTVVPL-------------EKVEDETVQWCKEIMK 211

>3tlf_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, otholog; 2.15A {Mycobacterium avium subsp} Length = 274

 Score = 66.4 bits (163), Expect = 1e-12
 Identities = 27/131 (20%), Positives = 46/131 (35%), Gaps = 22/131 (16%)

Query: 11  ALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGK--TLKAD 68
                  I  +        P V +GL+ G     R+ ++      L M L GK   + A 
Sbjct: 129 VTTTDIVIASEQAT--FFDPHVSIGLVAG-RELVRVSRVLPRSIALRMALMGKHERMSAQ 185

Query: 69  KAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLAS-GKLKINRTKPMI---P 124
           +A ++G++ ++VE              + L E A   A  + S   L +  T+  I    
Sbjct: 186 RAYELGLISEIVEH-------------DRLLERAHEIADIVNSNAPLAVRGTRLAILKGL 232

Query: 125 DKVLDVALKFE 135
           +  L  A    
Sbjct: 233 NVPLHEAEILA 243

>3oc7_A Enoyl-COA hydratase; seattle structural genomics center for infectious disease, S non-pathogenic mycobacterium species, ortholog; 1.50A {Mycobacterium avium} Length = 267

 Score = 65.3 bits (160), Expect = 2e-12
 Identities = 24/121 (19%), Positives = 43/121 (35%), Gaps = 10/121 (8%)

Query: 11  ALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKA 70
             AC   +          L E  +G+ P       LPKL+A        LTG+   A +A
Sbjct: 127 VGACDIAVAGPRSS--FALTEARIGVAPAIISLTLLPKLSA-RAAARYYLTGEKFDARRA 183

Query: 71  KKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDV 130
           +++G++    E L       +    + + +V   +   LA+ K           D+  + 
Sbjct: 184 EEIGLITMAAEDL-------DAAIDQLVTDVGRGSPQGLAASKALTTAAVLERFDRDAER 236

Query: 131 A 131
            
Sbjct: 237 L 237

>3t89_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily, lyase; 1.95A {Escherichia coli} PDB: 3t88_A 3h02_A 2iex_A Length = 289

 Score = 65.3 bits (160), Expect = 3e-12
 Identities = 15/101 (14%), Positives = 31/101 (30%), Gaps = 15/101 (14%)

Query: 11  ALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKA 70
            + C   I   +     G     +G   G  G   + ++       ++    +   A +A
Sbjct: 142 HMMCDLTIAADNAI--FGQTGPKVGSFDGGWGASYMARIVGQKKAREIWFLCRQYDAKQA 199

Query: 71  KKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLAS 111
             MG+V+ +V                 LE+  V    ++  
Sbjct: 200 LDMGLVNTVVPL-------------ADLEKETVRWCREMLQ 227

>3g64_A Putative enoyl-COA hydratase; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; 2.05A {Streptomyces coelicolor A3} Length = 279

 Score = 64.2 bits (157), Expect = 6e-12
 Identities = 25/106 (23%), Positives = 46/106 (43%), Gaps = 16/106 (15%)

Query: 8   ATVALACHYRIVVKDKKTGLGLPEVMLGLLPG-AGGTQRLPKLTALPNVLDMTLTGKTLK 66
           A +ALA  +R+     +         +GL  G  G    LP++  L +   + + G T++
Sbjct: 129 AVLALAADFRVADPSTR--FAFLFTRVGLSGGDMGAAYLLPRVVGLGHATRLLMLGDTVR 186

Query: 67  ADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASG 112
           A +A+++G++ +L E                 +E A   A +LA G
Sbjct: 187 APEAERIGLISELTEE-------------GRADEAARTLARRLADG 219

>3i47_A Enoyl COA hydratase/isomerase (crotonase); structural genomics; 1.58A {Legionella pneumophila subsp} Length = 268

 Score = 64.1 bits (157), Expect = 7e-12
 Identities = 21/110 (19%), Positives = 40/110 (36%), Gaps = 12/110 (10%)

Query: 11  ALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKA 70
           A AC   I     +      EV LGL+P A  +  + +         + ++ +   A +A
Sbjct: 118 AAACDIAIASTSAR--FCFSEVKLGLIP-AVISPYVVRAIGERAAKMLFMSAEVFDATRA 174

Query: 71  KKMGIVDQLVEP--LGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINR 118
             + +V   V    L        E T++Y  +++ N    + + K     
Sbjct: 175 YSLNLVQHCVPDDTL-------LEFTLKYASQISNNAPEAVKNSKQLAQY 217

>4eml_A Naphthoate synthase; 1,4-dihydroxy-2-naphthoyl-coenzyme A, lyase; 2.04A {Synechocystis SP} Length = 275

 Score = 63.8 bits (156), Expect = 1e-11
 Identities = 19/101 (18%), Positives = 37/101 (36%), Gaps = 15/101 (14%)

Query: 11  ALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKA 70
            L C   I   +     G     +G   G  G+  L ++       ++    +   A +A
Sbjct: 128 HLVCDLTIAADNAI--FGQTGPKVGSFDGGFGSSYLARIVGQKKAREIWYLCRQYSAQEA 185

Query: 71  KKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLAS 111
           ++MG+V+ +V               + LEE  +  A ++ S
Sbjct: 186 ERMGMVNTVVPV-------------DRLEEEGIQWAKEILS 213

>3hp0_A Putative polyketide biosynthesis enoyl-COA hydratase homolog PKSH; polyketide synthase, enoyl COA hydratase,isomerase; 2.32A {Bacillus subtilis} Length = 267

 Score = 59.9 bits (146), Expect = 1e-10
 Identities = 19/103 (18%), Positives = 33/103 (32%), Gaps = 10/103 (9%)

Query: 11  ALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKA 70
             A    I  +       L E++ GL P A     L +         MTL  K +   +A
Sbjct: 119 VSATDIAIADQTAS--FSLSELLFGLYP-ACVLPFLIRRIGRQKAHYMTLMTKPISVQEA 175

Query: 71  KKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGK 113
            + G++D             +    ++L  +       +A  K
Sbjct: 176 SEWGLIDAFDAES-------DVLLRKHLLRLRRLNKKGIAHYK 211

>3l3s_A Enoyl-COA hydratase/isomerase family protein; crotonase superfamily, dimer of trimers, PSI-2, NYSGXRC, structural genomics; 2.32A {Ruegeria pomeroyi} Length = 263

 Score = 60.0 bits (146), Expect = 2e-10
 Identities = 24/132 (18%), Positives = 42/132 (31%), Gaps = 15/132 (11%)

Query: 11  ALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKA 70
             AC         +    LP V  G          + ++     V +M LTG T  AD A
Sbjct: 123 MAACDLAYASPAAR--FCLPGVQNGGFCTTPAV-AVSRVIGRRAVTEMALTGATYDADWA 179

Query: 71  KKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDV 130
              G++++++               +    +A    + L  G   +NR   +     L+ 
Sbjct: 180 LAAGLINRILPE-----AALATHVADLAGALAARNQAPLRRGLETLNRHLEL----PLEQ 230

Query: 131 ALKFE---FVRN 139
           A        V +
Sbjct: 231 AYALATPVMVEH 242

>2vx2_A Enoyl-COA hydratase domain-containing protein 3; isomerase, fatty acid metabolism, transit peptide, lipid Met crontonase, mitochondrion, CAsp; 2.3A {Homo sapiens} Length = 287

 Score = 58.0 bits (141), Expect = 8e-10
 Identities = 30/140 (21%), Positives = 47/140 (33%), Gaps = 31/140 (22%)

Query: 11  ALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKA 70
             +C   I V   K+    P V +GL     G   L +       L+M  TG+ + A +A
Sbjct: 145 VASCD--IAVASDKSSFATPGVNVGLFCSTPGVA-LARAVPRKVALEMLFTGEPISAQEA 201

Query: 71  KKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLAS--------GKLKINRTKPM 122
              G++ ++V                 L+E  +  A ++AS        GK    +  P 
Sbjct: 202 LLHGLLSKVVPE-------------AELQEETMRIARKIASLSRPVVSLGKATFYKQLPQ 248

Query: 123 IPDKVLDVALKFE---FVRN 139
                L  A        V N
Sbjct: 249 ----DLGTAYYLTSQAMVDN 264

>3myb_A Enoyl-COA hydratase; ssgcid, struct genomics, seattle structural genomics center for infectious lyase; 1.55A {Mycobacterium smegmatis} Length = 286

 Score = 57.3 bits (139), Expect = 2e-09
 Identities = 22/125 (17%), Positives = 47/125 (37%), Gaps = 12/125 (9%)

Query: 11  ALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKA 70
              C   +  +D +    +  + +GL     G   L +        +M +TG+ + AD A
Sbjct: 138 VAMCDLAVATRDAR--FAVSGINVGLFCSTPGVA-LSRNVGRKAAFEMLVTGEFVSADDA 194

Query: 71  KKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDV 130
           K +G+V+++V P        ++     + ++     + +A GK    R         ++ 
Sbjct: 195 KGLGLVNRVVAP-----KALDDEIEAMVSKIVAKPRAAVAMGKALFYRQIETD----IES 245

Query: 131 ALKFE 135
           A    
Sbjct: 246 AYADA 250

>3njd_A Enoyl-COA hydratase; ssgcid, mycobacerium smegmatis, structu genomics, seattle structural genomics center for infectious lyase; 1.75A {Mycobacterium smegmatis} PDB: 3njb_A Length = 333

 Score = 57.5 bits (139), Expect = 2e-09
 Identities = 25/114 (21%), Positives = 41/114 (35%), Gaps = 14/114 (12%)

Query: 8   ATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKA 67
             +AL     I   D K  +G P + +  +P AG                +  TG  +  
Sbjct: 173 TDIALHADQVIAAADAK--IGYPPMRVWGVPAAG---LWAHRLGDQRAKRLLFTGDCITG 227

Query: 68  DKAKKMGIVDQLVEP--LGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRT 119
            +A + G+  +  +P  L       + RT   +E +A    +QL   KL  N  
Sbjct: 228 AQAAEWGLAVEAPDPADL-------DARTERLVERIAAMPVNQLIMAKLACNTA 274

>3t3w_A Probable enoyl-COA hydratase; ssgcid, structural genomics, seattle ST genomics center for infectious disease, lyase; 1.80A {Mycobacterium thermoresistibile} PDB: 3ome_A Length = 279

 Score = 53.8 bits (130), Expect = 2e-08
 Identities = 17/101 (16%), Positives = 36/101 (35%), Gaps = 17/101 (16%)

Query: 11  ALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKA 70
              C   I  +D       P V++ +  G                 ++  TG+ + A++ 
Sbjct: 136 CWPCDLIIAAEDAL--FSDPVVLMDI--GGVEYHGHTWELGPRKAKEILFTGRAMTAEEV 191

Query: 71  KKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLAS 111
            + G+V+++V         P +R    L+      A ++A 
Sbjct: 192 AQTGMVNRVV---------PRDR----LDAETRALAGEIAK 219

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 52.9 bits (126), Expect = 9e-08
 Identities = 47/320 (14%), Positives = 88/320 (27%), Gaps = 101/320 (31%)

Query: 79  LVEPLGPGLNHPEERTMEYLEEVAV--NTASQLASGKLKINRTKPMI----------PDK 126
           L+ P+      P   T  Y+E+     N     A  K  ++R +P +          P K
Sbjct: 94  LMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFA--KYNVSRLQPYLKLRQALLELRPAK 151

Query: 127 ---------------VLDVALKFEFVR---NQIF----GKAK--EKVMKMSGGLYPAPLK 162
                           LDV L ++       +IF          E V++M   L    + 
Sbjct: 152 NVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLL-YQID 210

Query: 163 ILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQ-SKGLMGL-----------FRAQTECKK 210
                R+           +      +L  +      L+ L           F     CK 
Sbjct: 211 PNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLS--CK- 267

Query: 211 NRLGKPQTPVKT--VAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLG------- 261
                    + T    V    L  A   H+++D    T+  D  +  L + L        
Sbjct: 268 -------ILLTTRFKQVTDF-LSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLP 319

Query: 262 -QIKTG------LDGAVKRKKMSALDRDRYLASLVGTLSYDPFKNA-DMVIE-------- 305
            ++ T       +     R  ++  D  ++       ++ D      +  +         
Sbjct: 320 REVLTTNPRRLSIIAESIRDGLATWDNWKH-------VNCDKLTTIIESSLNVLEPAEYR 372

Query: 306 ------AVF-EDINIKHQVI 318
                 +VF    +I   ++
Sbjct: 373 KMFDRLSVFPPSAHIPTILL 392

>3ju1_A Enoyl-COA hydratase/isomerase family protein; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; HET: MSE; 2.30A {Shewanella oneidensis} Length = 407

 Score = 42.0 bits (99), Expect = 2e-04
 Identities = 17/74 (22%), Positives = 35/74 (47%), Gaps = 7/74 (9%)

Query: 10  VALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLD--MTLTGKTLKA 67
           +     +++V +   + + +PEV +GL P  GG+  L +   +P  +   + LT   + A
Sbjct: 160 LMAGASHKVVTE--TSRIAMPEVTIGLYPDVGGSYFLNR---MPGKMGLFLGLTAYHMNA 214

Query: 68  DKAKKMGIVDQLVE 81
             A  +G+ D  + 
Sbjct: 215 ADACYVGLADHYLN 228

>3bpt_A 3-hydroxyisobutyryl-COA hydrolase; coenzyme A, beta-hydroxyisobutyryl acid, querceti structural genomics consortium, SGC; HET: QUE; 1.50A {Homo sapiens} Length = 363

 Score = 41.2 bits (97), Expect = 3e-04
 Identities = 21/74 (28%), Positives = 33/74 (44%), Gaps = 7/74 (9%)

Query: 10  VALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLD--MTLTGKTLKA 67
           +++   +R+    +K    +PE  +GL P  GG   LP+   L   L   + LTG  LK 
Sbjct: 120 LSVHGQFRVA--TEKCLFAMPETAIGLFPDVGGGYFLPR---LQGKLGYFLALTGFRLKG 174

Query: 68  DKAKKMGIVDQLVE 81
               + GI    V+
Sbjct: 175 RDVYRAGIATHFVD 188

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	359
3zwc_A	742	Peroxisomal bifunctional enzyme; beta oxidation pa	100.0
2wtb_A	725	MFP2, fatty acid multifunctional protein (ATMFP2);	100.0
1wdk_A	715	Fatty oxidation complex alpha subunit; alpha2BETA2	100.0
3hrx_A	254	Probable enoyl-COA hydratase; the spiral fold, the	100.0
4fzw_A	258	2,3-dehydroadipyl-COA hydratase; structural genomi	99.98
4fzw_C	274	1,2-epoxyphenylacetyl-COA isomerase; structural ge	99.98
3hin_A	275	Putative 3-hydroxybutyryl-COA dehydratase; structu	99.97
3kqf_A	265	Enoyl-COA hydratase/isomerase family protein; IDP0	99.97
3trr_A	256	Probable enoyl-COA hydratase/isomerase; ssgcid, st	99.97
3h81_A	278	Enoyl-COA hydratase ECHA8; niaid, decode, infectio	99.97
3moy_A	263	Probable enoyl-COA hydratase; ssgcid, seattle stru	99.97
3pea_A	261	Enoyl-COA hydratase/isomerase family protein; stru	99.97
3gow_A	254	PAAG, probable enoyl-COA hydratase; the spiral fol	99.97
3rsi_A	265	Putative enoyl-COA hydratase/isomerase; structural	99.97
3r9t_A	267	ECHA1_1; ssgcid, seattle structural genomics cente	99.97
3qxi_A	265	Enoyl-COA hydratase ECHA1; structural genomics, se	99.97
3swx_A	265	Probable enoyl-COA hydratase/isomerase; structural	99.97
3p5m_A	255	Enoyl-COA hydratase/isomerase; seattle structural	99.97
3g64_A	279	Putative enoyl-COA hydratase; alpha-beta structure	99.97
4hdt_A	353	3-hydroxyisobutyryl-COA hydrolase; ssgcid, carniti	99.97
4f47_A	278	Enoyl-COA hydratase ECHA19; ssgcid, seattle struct	99.97
3qxz_A	265	Enoyl-COA hydratase/isomerase; structural genomics	99.97
3i47_A	268	Enoyl COA hydratase/isomerase (crotonase); structu	99.97
2pbp_A	258	Enoyl-COA hydratase subunit I; B-oxidation, struct	99.97
1nzy_A	269	Dehalogenase, 4-chlorobenzoyl coenzyme A dehalogen	99.97
3sll_A	290	Probable enoyl-COA hydratase/isomerase; structural	99.97
2gtr_A	261	CDY-like, chromodomain Y-like protein; structural	99.97
3tlf_A	274	Enoyl-COA hydratase/isomerase; structural genomics	99.97
1mj3_A	260	Enoyl-COA hydratase, mitochondrial; homohexamer, l	99.97
2ej5_A	257	Enoyl-COA hydratase subunit II; structural genomic	99.97
2ppy_A	265	Enoyl-COA hydratase; beta-oxidation, fatty acid me	99.97
3qre_A	298	Enoyl-COA hydratase, ECHA12_1; structural genomics	99.97
3r9q_A	262	Enoyl-COA hydratase/isomerase; ssgcid, lyase,isome	99.96
3fdu_A	266	Putative enoyl-COA hydratase/isomerase; structural	99.96
1wz8_A	264	Enoyl-COA hydratase; lyase, crotonase, hexamer, st	99.96
2fbm_A	291	Y chromosome chromodomain protein 1, telomeric IS;	99.96
1ef8_A	261	Methylmalonyl COA decarboxylase; lyase; 1.85A {Esc	99.96
3myb_A	286	Enoyl-COA hydratase; ssgcid, struct genomics, seat	99.96
1dci_A	275	Dienoyl-COA isomerase; lyase; 1.50A {Rattus norveg	99.96
1uiy_A	253	Enoyl-COA hydratase; lyase, beta-oxidation, croton	99.96
2vx2_A	287	Enoyl-COA hydratase domain-containing protein 3; i	99.96
3gkb_A	287	Putative enoyl-COA hydratase; structural genomics,	99.96
1sg4_A	260	3,2-trans-enoyl-COA isomerase, mitochondrial; crot	99.96
2f6q_A	280	Peroxisomal 3,2-trans-enoyl-COA isomerase; peroxis	99.96
3qmj_A	256	Enoyl-COA hydratase, ECHA8_6; ssgcid, NIH, niaid,	99.96
4eml_A	275	Naphthoate synthase; 1,4-dihydroxy-2-naphthoyl-coe	99.96
3lke_A	263	Enoyl-COA hydratase; nysgrc, target 112 structural	99.96
2uzf_A	273	Naphthoate synthase; lyase, menaquinone biosynthes	99.96
2j5i_A	276	P-hydroxycinnamoyl COA hydratase/lyase; vanillin,	99.96
3oc7_A	267	Enoyl-COA hydratase; seattle structural genomics c	99.96
3t8b_A	334	1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase	99.96
3t89_A	289	1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase	99.96
1hzd_A	272	AUH, AU-binding protein/enoyl-COA hydratase; RNA-b	99.96
3qk8_A	272	Enoyl-COA hydratase ECHA15; ssgcid, NIH, niaid, SB	99.96
3hp0_A	267	Putative polyketide biosynthesis enoyl-COA hydrata	99.96
2a7k_A	250	CARB; crotonase, antibiotic, beta-lactam, biosynth	99.96
3pe8_A	256	Enoyl-COA hydratase; emerald biostructures, struct	99.96
3h0u_A	289	Putative enoyl-COA hydratase; structural genomics,	99.95
3lao_A	258	Enoyl-COA hydratase/isomerase; alpha-beta sandwich	99.95
3rrv_A	276	Enoyl-COA hydratase/isomerase; structural genomics	99.95
3he2_A	264	Enoyl-COA hydratase ECHA6; fatty acid metabolism,	99.95
3bpt_A	363	3-hydroxyisobutyryl-COA hydrolase; coenzyme A, bet	99.95
3ju1_A	407	Enoyl-COA hydratase/isomerase family protein; alph	99.95
3l3s_A	263	Enoyl-COA hydratase/isomerase family protein; crot	99.95
3isa_A	254	Putative enoyl-COA hydratase/isomerase; structural	99.95
2q35_A	243	CURF; crotonase, lyase; 1.65A {Lyngbya majuscula}	99.95
4di1_A	277	Enoyl-COA hydratase ECHA17; structural genomics, s	99.94
3ado_A	319	Lambda-crystallin; L-gulonate 3-dehydrogenase, str	99.94
3m6n_A	305	RPFF protein; enoyl-COA hydratase, lyase; 1.80A {X	99.94
1pjh_A	280	Enoyl-COA isomerase; ECI1P; beta-BETA-alpha spiral	99.93
2np9_A	440	DPGC; protein inhibitor complex, oxidoreductase; H	99.92
2j5g_A	263	ALR4455 protein; enzyme evolution, C-C bond hydrol	99.91
3k6j_A	460	Protein F01G10.3, confirmed by transcript evidenc;	99.91
3njd_A	333	Enoyl-COA hydratase; ssgcid, mycobacerium smegmati	99.91
3r6h_A	233	Enoyl-COA hydratase, ECHA3; ssgcid, mycobacerium m	99.91
3ot6_A	232	Enoyl-COA hydratase/isomerase family protein; stru	99.91
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	99.9
1szo_A	257	6-oxocamphor hydrolase; enzyme-product complex; HE	99.89
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	99.88
3mog_A	483	Probable 3-hydroxybutyryl-COA dehydrogenase; struc	99.88
3t3w_A	279	Enoyl-COA hydratase; ssgcid, structural genomics,	99.87
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	99.87
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	99.85
1zej_A	293	HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural	99.83
2w3p_A	556	Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ri	99.82
3tri_A	280	Pyrroline-5-carboxylate reductase; amino acid bios	99.56
3gt0_A	247	Pyrroline-5-carboxylate reductase; structural geno	99.48
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	99.44
2hjr_A	328	Malate dehydrogenase; malaria, structural genomics	99.43
2ewd_A	317	Lactate dehydrogenase,; protein-substrate_cofactor	99.42
1t2d_A	322	LDH-P, L-lactate dehydrogenase; ternary complex, o	99.37
3c24_A	286	Putative oxidoreductase; YP_511008.1, structural g	99.34
2izz_A	322	Pyrroline-5-carboxylate reductase 1; amino-acid bi	99.34
1pzg_A	331	LDH, lactate dehydrogenase; apicomplexa, APAD, tet	99.32
3b1f_A	290	Putative prephenate dehydrogenase; enzyme, 4-hydro	99.31
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	99.31
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	99.31
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	99.3
3obb_A	300	Probable 3-hydroxyisobutyrate dehydrogenase; struc	99.3
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	99.28
3g79_A	478	NDP-N-acetyl-D-galactosaminuronic acid dehydrogen;	99.27
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	99.26
1yqg_A	263	Pyrroline-5-carboxylate reductase; structural geno	99.26
3qsg_A	312	NAD-binding phosphogluconate dehydrogenase-like P;	99.26
3d1l_A	266	Putative NADP oxidoreductase BF3122; structural ge	99.26
4gbj_A	297	6-phosphogluconate dehydrogenase NAD-binding; stru	99.25
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	99.25
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	99.24
4huj_A	220	Uncharacterized protein; PSI-biology, nysgrc, stru	99.24
2h78_A	302	Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601	99.24
2i6t_A	303	Ubiquitin-conjugating enzyme E2-like isoform A; L-	99.24
3hwr_A	318	2-dehydropantoate 2-reductase; YP_299159.1, PANE/A	99.23
3pdu_A	287	3-hydroxyisobutyrate dehydrogenase family protein;	99.22
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	99.22
3ktd_A	341	Prephenate dehydrogenase; structural genomics, joi	99.22
1ur5_A	309	Malate dehydrogenase; oxidoreductase, tricarboxyli	99.22
3pef_A	287	6-phosphogluconate dehydrogenase, NAD-binding; gam	99.21
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	99.21
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	99.2
3pid_A	432	UDP-glucose 6-dehydrogenase; rossmann fold, oxidor	99.19
2pv7_A	298	T-protein [includes: chorismate mutase (EC 5.4.99	99.18
3qha_A	296	Putative oxidoreductase; seattle structural genomi	99.18
2g5c_A	281	Prephenate dehydrogenase; TYRA, oxidoreductase; HE	99.17
1a5z_A	319	L-lactate dehydrogenase; oxidoreductase, glycolysi	99.17
2v6b_A	304	L-LDH, L-lactate dehydrogenase; oxidoreductase, ra	99.16
2raf_A	209	Putative dinucleotide-binding oxidoreductase; NP_7	99.16
3ojo_A	431	CAP5O; rossmann fold, complex with cofactor NAD an	99.14
3p7m_A	321	Malate dehydrogenase; putative dehydrogenase, enzy	99.14
2rcy_A	262	Pyrroline carboxylate reductase; malaria, structur	99.13
2ahr_A	259	Putative pyrroline carboxylate reductase; pyrrolin	99.13
3ldh_A	330	Lactate dehydrogenase; oxidoreductase, CHOH donor,	99.13
1evy_A	366	Glycerol-3-phosphate dehydrogenase; rossmann fold,	99.12
3gvi_A	324	Malate dehydrogenase; NAD, oxidoreductase, tricarb	99.12
3dfu_A	232	Uncharacterized protein from 6-phosphogluconate de	99.12
1x0v_A	354	GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase	99.12
4ezb_A	317	Uncharacterized conserved protein; structural geno	99.11
3tl2_A	315	Malate dehydrogenase; center for structural genomi	99.11
1hyh_A	309	L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2	99.11
3dtt_A	245	NADP oxidoreductase; structural genomics, joint ce	99.11
2zyd_A	480	6-phosphogluconate dehydrogenase, decarboxylating;	99.1
1yj8_A	375	Glycerol-3-phosphate dehydrogenase; SGPP, structur	99.09
2iz1_A	474	6-phosphogluconate dehydrogenase, decarboxylating;	99.09
3cky_A	301	2-hydroxymethyl glutarate dehydrogenase; rossmann	99.08
3ghy_A	335	Ketopantoate reductase protein; oxidoreductase, NA	99.08
1guz_A	310	Malate dehydrogenase; oxidoreductase, tricarboxyli	99.07
1lld_A	319	L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N	99.07
3l6d_A	306	Putative oxidoreductase; structural genomics, prot	99.07
2d4a_B	308	Malate dehydrogenase; archaea, hyperthermophIle, o	99.07
3viv_A	230	441AA long hypothetical NFED protein; protein-pept	99.06
2o3j_A	481	UDP-glucose 6-dehydrogenase; structural genomics,	99.06
4gwg_A	484	6-phosphogluconate dehydrogenase, decarboxylating;	99.06
3vtf_A	444	UDP-glucose 6-dehydrogenase; two discrete alpha/be	99.05
1mv8_A	436	GMD, GDP-mannose 6-dehydrogenase; rossman fold, do	99.04
2gf2_A	296	Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct	99.04
1z82_A	335	Glycerol-3-phosphate dehydrogenase; TM0378, struct	99.03
2uyy_A	316	N-PAC protein; long-chain dehydrogenase, cytokine;	99.02
1np3_A	338	Ketol-acid reductoisomerase; A DEEP figure-OF-eigh	99.02
2p4q_A	497	6-phosphogluconate dehydrogenase, decarboxylating;	99.02
1vpd_A	299	Tartronate semialdehyde reductase; structural geno	99.01
1oju_A	294	MDH, malate dehydrogenase; hyperthermophilic, oxid	99.01
1jay_A	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma	99.01
2cvz_A	289	Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase;	99.0
3hn2_A	312	2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str	98.99
2vns_A	215	Metalloreductase steap3; metal-binding, transmembr	98.99
1txg_A	335	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid	98.99
4fgw_A	391	Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxi	98.98
2q3e_A	467	UDP-glucose 6-dehydrogenase; hexamer, structural g	98.97
1ldn_A	316	L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA	98.97
3i83_A	320	2-dehydropantoate 2-reductase; structural genomics	98.95
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	98.95
1i36_A	264	Conserved hypothetical protein MTH1747; NADP bindi	98.94
1u8x_X	472	Maltose-6'-phosphate glucosidase; structural genom	98.94
2qyt_A	317	2-dehydropantoate 2-reductase; APC81190, porphyrom	98.94
3bf0_A	593	Protease 4; bacterial, hydrolase, inner membrane,	98.94
2pgd_A	482	6-phosphogluconate dehydrogenase; oxidoreductase (	98.94
1obb_A	480	Maltase, alpha-glucosidase; glycosidase, sulfinic	98.93
2i76_A	276	Hypothetical protein; NADP, dehydrogenase, TM1727,	98.93
3ego_A	307	Probable 2-dehydropantoate 2-reductase; structural	98.92
1yb4_A	295	Tartronic semialdehyde reductase; structural genom	98.92
1pgj_A	478	6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o	98.91
1ks9_A	291	KPA reductase;, 2-dehydropantoate 2-reductase; PAN	98.9
4aj2_A	331	L-lactate dehydrogenase A chain; oxidoreductase-in	98.9
3nep_X	314	Malate dehydrogenase; halophIle, molecular adpatat	98.89
1dlj_A	402	UDP-glucose dehydrogenase; rossmann fold, ternary	98.89
3c7a_A	404	Octopine dehydrogenase; L) stereospecific opine de	98.87
3rst_A	240	Signal peptide peptidase SPPA; alpha/beta protein	98.86
3pqe_A	326	L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas	98.86
2x0j_A	294	Malate dehydrogenase; oxidoreductase, hyperthermop	98.86
3d0o_A	317	L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly	98.8
3fi9_A	343	Malate dehydrogenase; structural genomics, oxidore	98.8
3fef_A	450	Putative glucosidase LPLD; gulosidase, structural	98.78
2w2k_A	348	D-mandelate dehydrogenase; 2-hydroxyacid dehydroge	98.78
2gcg_A	330	Glyoxylate reductase/hydroxypyruvate reductase; NA	98.76
1s6y_A	450	6-phospho-beta-glucosidase; hydrolase, structural	98.76
3fr7_A	525	Putative ketol-acid reductoisomerase (OS05G057370	98.76
2zqz_A	326	L-LDH, L-lactate dehydrogenase; oxidoreductase, ro	98.73
1ez4_A	318	Lactate dehydrogenase; rossmann fold, oxidoreducta	98.73
3vku_A	326	L-LDH, L-lactate dehydrogenase; rossmann fold, NAD	98.73
2xxj_A	310	L-LDH, L-lactate dehydrogenase; oxidoreductase, hy	98.72
2dbq_A	334	Glyoxylate reductase; D-3-phosphoglycerate dehydro	98.71
1y6j_A	318	L-lactate dehydrogenase; southeast collaboratory f	98.7
3ba1_A	333	HPPR, hydroxyphenylpyruvate reductase; two domain	98.69
3g17_A	294	Similar to 2-dehydropantoate 2-reductase; structur	98.67
2yjz_A	201	Metalloreductase steap4; oxidoreductase, metabolic	98.11
1y7o_A	218	ATP-dependent CLP protease proteolytic subunit; hy	98.66
2d0i_A	333	Dehydrogenase; structural genomics, NPPSFA, nation	98.57
3gvx_A	290	Glycerate dehydrogenase related protein; NYSGXRC,	98.54
4dgs_A	340	Dehydrogenase; structural genomics, PSI-biology, N	98.5
1gdh_A	320	D-glycerate dehydrogenase; oxidoreductase(CHOH (D)	98.45
3jtm_A	351	Formate dehydrogenase, mitochondrial; mitochondrio	98.43
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	98.43
3evt_A	324	Phosphoglycerate dehydrogenase; structural genomic	98.41
3gg9_A	352	D-3-phosphoglycerate dehydrogenase oxidoreductase;	98.41
3hg7_A	324	D-isomer specific 2-hydroxyacid dehydrogenase FAM	98.4
3pp8_A	315	Glyoxylate/hydroxypyruvate reductase A; structural	98.38
2ekl_A	313	D-3-phosphoglycerate dehydrogenase; structural gen	98.38
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	98.38
1o6z_A	303	MDH, malate dehydrogenase; halophilic, ION-binding	98.37
1wwk_A	307	Phosphoglycerate dehydrogenase; riken structural g	98.35
4g2n_A	345	D-isomer specific 2-hydroxyacid dehydrogenase, Na;	98.34
2f9i_A	327	Acetyl-coenzyme A carboxylase carboxyl transferase	98.34
1qp8_A	303	Formate dehydrogenase; oxidoreductase; HET: NDP; 2	98.34
2g76_A	335	3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor	98.33
1mld_A	314	Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D	98.32
2f9y_A	339	Acetyl-COA carboxylase, carboxyltransferase alpha;	98.32
2i99_A	312	MU-crystallin homolog; thyroid hormine binding pro	98.31
4e5n_A	330	Thermostable phosphite dehydrogenase; D-2-hydroxya	98.31
1smk_A	326	Malate dehydrogenase, glyoxysomal; tricarboxylic c	98.31
2nac_A	393	NAD-dependent formate dehydrogenase; oxidoreductas	98.29
1up7_A	417	6-phospho-beta-glucosidase; hydrolase, family4 hyd	98.29
2pi1_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	98.29
1mx3_A	347	CTBP1, C-terminal binding protein 1; nuclear prote	98.28
2j6i_A	364	Formate dehydrogenase; oxidoreductase, D-specific-	98.27
1j4a_A	333	D-LDH, D-lactate dehydrogenase; NAD-dependent dehy	98.24
4hy3_A	365	Phosphoglycerate oxidoreductase; PSI-biology, stru	98.23
2hk9_A	275	Shikimate dehydrogenase; shikimate pathway, drug d	98.23
2yq5_A	343	D-isomer specific 2-hydroxyacid dehydrogenase; oxi	98.22
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	98.21
1b8p_A	329	Protein (malate dehydrogenase); oxidoreductase; 1.	98.2
2cuk_A	311	Glycerate dehydrogenase/glyoxylate reductase; stru	98.19
3k5p_A	416	D-3-phosphoglycerate dehydrogenase; niaid, ssgcid,	98.18
1ygy_A	529	PGDH, D-3-phosphoglycerate dehydrogenase; oxidored	98.18
1sc6_A	404	PGDH, D-3-phosphoglycerate dehydrogenase; alloster	98.18
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	98.16
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	98.15
2f9y_B	304	Acetyl-coenzyme A carboxylase carboxyl transferas	98.14
3oet_A	381	Erythronate-4-phosphate dehydrogenase; structural	98.12
3hhp_A	312	Malate dehydrogenase; MDH, citric acid cycle, TCA	98.09
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	98.09
2o4c_A	380	Erythronate-4-phosphate dehydrogenase; erythronate	98.08
3c85_A	183	Putative glutathione-regulated potassium-efflux S	98.07
1dxy_A	333	D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxyc	98.05
1hye_A	313	L-lactate/malate dehydrogenase; nucleotide binding	98.02
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	97.99
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	97.98
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	97.98
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	97.98
1y81_A	138	Conserved hypothetical protein; hyperthermophIle,	97.98
2duw_A	145	Putative COA-binding protein; ligand binding prote	97.98
3u95_A	477	Glycoside hydrolase, family 4; hydrolysis, cytosol	97.97
4h7p_A	345	Malate dehydrogenase; ssgcid, structural G seattle	97.95
1xdw_A	331	NAD+-dependent (R)-2-hydroxyglutarate dehydrogenas	97.94
3uuw_A	308	Putative oxidoreductase with NAD(P)-binding rossm	97.93
2d5c_A	263	AROE, shikimate 5-dehydrogenase; substrate, dimer,	97.91
3q2i_A	354	Dehydrogenase; rossmann fold, UDP-sugar binding, N	97.83
5mdh_A	333	Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH	97.81
3euw_A	344	MYO-inositol dehydrogenase; protein structure init	97.81
3qy9_A	243	DHPR, dihydrodipicolinate reductase; rossmann fold	97.8
1v8b_A	479	Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2	97.77
3d64_A	494	Adenosylhomocysteinase; structural genomics, ssgci	97.77
3db2_A	354	Putative NADPH-dependent oxidoreductase; two domai	97.76
1x7d_A	350	Ornithine cyclodeaminase; binds NAD+, binds L-orni	97.75
1id1_A	153	Putative potassium channel protein; RCK domain, E.	97.75
3e9m_A	330	Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA,	97.74
7mdh_A	375	Protein (malate dehydrogenase); chloroplastic mala	97.72
3ce6_A	494	Adenosylhomocysteinase; protein-substrate complex,	97.71
3h9u_A	436	Adenosylhomocysteinase; NAD CO-factor complex, str	97.7
3rc1_A	350	Sugar 3-ketoreductase; sugar biosynthesis, TDP bin	97.67
3kb6_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	97.65
2dc1_A	236	L-aspartate dehydrogenase; NAD, oxidoreductase; HE	97.64
1omo_A	322	Alanine dehydrogenase; two-domain, beta-sandwich-d	97.64
4hkt_A	331	Inositol 2-dehydrogenase; structural genomics, nys	97.62
3gvp_A	435	Adenosylhomocysteinase 3; protein CO-factor comple	97.62
1tlt_A	319	Putative oxidoreductase (virulence factor MVIM HO;	97.61
3u62_A	253	Shikimate dehydrogenase; shikimate pathway, oxidor	97.56
1xea_A	323	Oxidoreductase, GFO/IDH/MOCA family; structural ge	97.55
3cea_A	346	MYO-inositol 2-dehydrogenase; NP_786804.1, oxidore	97.51
3n58_A	464	Adenosylhomocysteinase; ssgcid, hydrolase, structu	97.51
3ezy_A	344	Dehydrogenase; structural genomics, unknown functi	97.5
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	97.49
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	97.48
2ho3_A	325	Oxidoreductase, GFO/IDH/MOCA family; streptococcus	97.48
3ulk_A	491	Ketol-acid reductoisomerase; branched-chain amino	97.47
3hdj_A	313	Probable ornithine cyclodeaminase; APC62486, borde	97.46
3phh_A	269	Shikimate dehydrogenase; shikimate pathway, helico	97.43
2cby_A	208	ATP-dependent CLP protease proteolytic subunit 1;	97.43
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	97.42
2egg_A	297	AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff	97.41
1h6d_A	433	Precursor form of glucose-fructose oxidoreductase;	97.4
3c1a_A	315	Putative oxidoreductase; ZP_00056571.1, oxidoreduc	97.38
3ec7_A	357	Putative dehydrogenase; alpha-beta, structural gen	97.38
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	97.38
3e18_A	359	Oxidoreductase; dehydrogenase, NAD-binding, struct	97.35
2z2v_A	365	Hypothetical protein PH1688; L-lysine dehydrogenas	97.35
2glx_A	332	1,5-anhydro-D-fructose reductase; NADP(H) dependen	97.33
3bio_A	304	Oxidoreductase, GFO/IDH/MOCA family; structural ge	97.28
1iuk_A	140	Hypothetical protein TT1466; structural genomics,	97.27
1npy_A	271	Hypothetical shikimate 5-dehydrogenase-like protei	97.26
3mz0_A	344	Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd;	97.26
1leh_A	364	Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi	97.25
1p77_A	272	Shikimate 5-dehydrogenase; NADPH, oxidoreductase;	97.25
3o8q_A	281	Shikimate 5-dehydrogenase I alpha; structural geno	97.24
2d59_A	144	Hypothetical protein PH1109; COA binding, structur	97.23
2p2s_A	336	Putative oxidoreductase; YP_050235.1, structural g	97.21
4had_A	350	Probable oxidoreductase protein; structural genomi	97.19
1gpj_A	404	Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro	97.19
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	97.19
3ond_A	488	Adenosylhomocysteinase; plant protein, enzyme-subs	97.17
1nyt_A	271	Shikimate 5-dehydrogenase; alpha/beta domains, WID	97.15
3m2t_A	359	Probable dehydrogenase; PSI, SGXNY, structural gen	97.15
1ydw_A	362	AX110P-like protein; structural genomics, protein	97.12
3evn_A	329	Oxidoreductase, GFO/IDH/MOCA family; structural ge	97.12
1f06_A	320	MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH	97.1
3ohs_X	334	Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; d	97.08
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	97.06
3jyo_A	283	Quinate/shikimate dehydrogenase; enzyme-cofactor c	97.05
3pwz_A	272	Shikimate dehydrogenase 3; alpha-beta, oxidoreduct	97.04
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	97.02
3abi_A	365	Putative uncharacterized protein PH1688; L-lysine	97.01
2aef_A	234	Calcium-gated potassium channel MTHK; rossmann fol	97.01
3v5n_A	417	Oxidoreductase; structural genomics, PSI-biology,	96.98
2ixa_A	444	Alpha-N-acetylgalactosaminidase; NAD, A-ECO conver	96.96
1y7t_A	327	Malate dehydrogenase; NAD-dependent-MDH-NADPH comp	96.94
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	96.91
1nvt_A	287	Shikimate 5'-dehydrogenase; structural genomics, P	96.89
4f3y_A	272	DHPR, dihydrodipicolinate reductase; structural ge	96.88
4g65_A	461	TRK system potassium uptake protein TRKA; structur	96.88
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	96.85
3don_A	277	Shikimate dehydrogenase; alpha-beta structure, ros	96.84
3tum_A	269	Shikimate dehydrogenase family protein; rossmann-f	96.84
3e82_A	364	Putative oxidoreductase; NAD, GFO/IDH/MOCA family,	96.78
3r6d_A	221	NAD-dependent epimerase/dehydratase; structural ge	96.77
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	96.72
3u3x_A	361	Oxidoreductase; structural genomics, PSI-biology,	96.72
3fbt_A	282	Chorismate mutase and shikimate 5-dehydrogenase fu	96.71
3dty_A	398	Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetram	96.7
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	96.69
3gdo_A	358	Uncharacterized oxidoreductase YVAA; structural ge	96.68
3moi_A	387	Probable dehydrogenase; structural genomics, PSI2,	96.67
3kux_A	352	Putative oxidoreductase; oxidoreductase family, cs	96.63
1dih_A	273	Dihydrodipicolinate reductase; oxidoreductase; HET	96.61
4ina_A	405	Saccharopine dehydrogenase; structural genomics, P	96.57
2nvw_A	479	Galactose/lactose metabolism regulatory protein GA	96.53
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	96.49
3upl_A	446	Oxidoreductase; rossmann fold, NADPH binding; 1.50	96.48
4gqa_A	412	NAD binding oxidoreductase; structural genomics, P	96.47
1zh8_A	340	Oxidoreductase; TM0312, structural genomics, JO ce	96.47
2yyy_A	343	Glyceraldehyde-3-phosphate dehydrogenase; glyceral	96.44
3fhl_A	362	Putative oxidoreductase; NAD-binding domain, PSI-2	96.31
3tnl_A	315	Shikimate dehydrogenase; structural genomics, cent	96.31
3t4e_A	312	Quinate/shikimate dehydrogenase; structural genomi	96.3
4fb5_A	393	Probable oxidoreductase protein; PSI-biology, nysg	96.29
2f6i_A	215	ATP-dependent CLP protease, putative; structural g	96.28
3btv_A	438	Galactose/lactose metabolism regulatory protein GA	96.23
3qwd_A	203	ATP-dependent CLP protease proteolytic subunit; ca	96.19
3kkj_A	336	Amine oxidase, flavin-containing; oxidoreductase,	96.17
4gmf_A	372	Yersiniabactin biosynthetic protein YBTU; rossmann	96.15
3dhn_A	227	NAD-dependent epimerase/dehydratase; reductase, PF	96.11
1y1p_A	342	ARII, aldehyde reductase II; rossmann fold, short	96.1
3f4l_A	345	Putative oxidoreductase YHHX; structural genomics,	96.07
4a26_A	300	Putative C-1-tetrahydrofolate synthase, cytoplasm;	96.07
2vt3_A	215	REX, redox-sensing transcriptional repressor REX;	96.05
3ngx_A	276	Bifunctional protein fold; methylenetetrahydrofola	95.98
2czc_A	334	Glyceraldehyde-3-phosphate dehydrogenase; glycolys	95.96
4hv4_A	494	UDP-N-acetylmuramate--L-alanine ligase; MURC, yers	95.94
1nvm_B	312	Acetaldehyde dehydrogenase (acylating), 4-hydroxy-	95.94
3eag_A	326	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME	95.93
4h3v_A	390	Oxidoreductase domain protein; structural genomics	95.92
1zud_1	251	Adenylyltransferase THIF; thiamin, thiazole, prote	95.89
2ejw_A	332	HDH, homoserine dehydrogenase; NAD-dependent, oxid	95.86
3oa2_A	318	WBPB; oxidoreductase, sugar biosynthesis, dehydrog	95.86
3qvo_A	236	NMRA family protein; structural genomics, PSI-biol	95.85
3lk7_A	451	UDP-N-acetylmuramoylalanine--D-glutamate ligase; a	95.82
1cf2_P	337	Protein (glyceraldehyde-3-phosphate dehydrogenase)	95.78
3dqp_A	219	Oxidoreductase YLBE; alpha-beta protein., structur	95.76
4hb9_A	412	Similarities with probable monooxygenase; flavin,	95.76
1a4i_A	301	Methylenetetrahydrofolate dehydrogenase / methenyl	95.75
3p2o_A	285	Bifunctional protein fold; structural genomics, ce	95.74
4b4o_A	298	Epimerase family protein SDR39U1; isomerase; HET:	95.74
4g65_A	461	TRK system potassium uptake protein TRKA; structur	95.73
3dr3_A	337	N-acetyl-gamma-glutamyl-phosphate reductase; csgid	95.64
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	95.63
3o9z_A	312	Lipopolysaccaride biosynthesis protein WBPB; oxido	95.62
1ff9_A	450	Saccharopine reductase; lysine biosynthesis, alpha	95.62
3l07_A	285	Bifunctional protein fold; structural genomics, ID	95.61
3ff4_A	122	Uncharacterized protein; structural genomics, PSI-	95.6
1tg6_A	277	Putative ATP-dependent CLP protease proteolytic S;	95.59
2w3p_A	556	Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ri	95.59
4dgk_A	501	Phytoene dehydrogenase; the FAD/NAD(P)-binding ros	95.59
3oh8_A	516	Nucleoside-diphosphate sugar epimerase (SULA FAMI;	95.54
1lnq_A	336	MTHK channels, potassium channel related protein;	95.53
3do5_A	327	HOM, homoserine dehydrogenase; NP_069768.1, putati	95.51
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	95.51
1edz_A	320	5,10-methylenetetrahydrofolate dehydrogenase; nucl	95.5
1lu9_A	287	Methylene tetrahydromethanopterin dehydrogenase; a	95.48
3h8v_A	292	Ubiquitin-like modifier-activating enzyme 5; rossm	95.48
3ijp_A	288	DHPR, dihydrodipicolinate reductase; ssgcid, SBRI,	95.47
4a5o_A	286	Bifunctional protein fold; oxidoreductase, hydrola	95.44
1b0a_A	288	Protein (fold bifunctional protein); folate, dehyd	95.43
1b7g_O	340	Protein (glyceraldehyde 3-phosphate dehydrogenase;	95.42
2ozp_A	345	N-acetyl-gamma-glutamyl-phosphate reductase; amino	95.41
3oqb_A	383	Oxidoreductase; structural genomics, protein struc	95.38
2c07_A	285	3-oxoacyl-(acyl-carrier protein) reductase; oxidor	95.38
3o38_A	266	Short chain dehydrogenase; tuberculosis, ortholog	95.37
3l6e_A	235	Oxidoreductase, short-chain dehydrogenase/reducta;	95.34
1yg6_A	193	ATP-dependent CLP protease proteolytic subunit; en	95.32
4ew6_A	330	D-galactose-1-dehydrogenase protein; nysgrc, PSI-b	95.32
2nu8_A	288	Succinyl-COA ligase [ADP-forming] subunit alpha; c	95.26
1j5p_A	253	Aspartate dehydrogenase; TM1643, structural genomi	95.26
3p2l_A	201	ATP-dependent CLP protease proteolytic subunit; st	95.2
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	95.2
2c2x_A	281	Methylenetetrahydrofolate dehydrogenase- methenylt	95.19
3i6i_A	346	Putative leucoanthocyanidin reductase 1; rossmann	95.19
3i23_A	349	Oxidoreductase, GFO/IDH/MOCA family; structural ge	95.18
2wsb_A	254	Galactitol dehydrogenase; oxidoreductase, SDR, ros	95.14
3oz2_A	397	Digeranylgeranylglycerophospholipid reductase; str	95.14
3i1j_A	247	Oxidoreductase, short chain dehydrogenase/reducta;	95.11
3rkr_A	262	Short chain oxidoreductase; rossmann fold; HET: NA	95.09
4g81_D	255	Putative hexonate dehydrogenase; enzyme function i	95.07
3qj4_A	342	Renalase; FAD/NAD(P)-binding rossmann fold superfa	95.04
1yb1_A	272	17-beta-hydroxysteroid dehydrogenase type XI; shor	94.98
3pk0_A	262	Short-chain dehydrogenase/reductase SDR; ssgcid, s	94.93
3e5r_O	337	PP38, glyceraldehyde-3-phosphate dehydrogenase, cy	94.92
3ruf_A	351	WBGU; rossmann fold, UDP-hexose 4-epimerase, isome	94.91
1p9l_A	245	Dihydrodipicolinate reductase; oxidoreductase, lys	94.91
2ph3_A	245	3-oxoacyl-[acyl carrier protein] reductase; TTHA04	94.89
1xyg_A	359	Putative N-acetyl-gamma-glutamyl-phosphate reduct;	94.88
1vl6_A	388	Malate oxidoreductase; TM0542, NAD-dependent malic	94.88
4gm2_A	205	ATP-dependent CLP protease proteolytic subunit; st	94.87
3mtj_A	444	Homoserine dehydrogenase; rossmann-fold, PSI, MCSG	94.85
3h5n_A	353	MCCB protein; ubiquitin-activating enzyme, microci	94.85
3hsk_A	381	Aspartate-semialdehyde dehydrogenase; candida albi	94.84
2axq_A	467	Saccharopine dehydrogenase; rossmann fold variant,	94.83
1c1d_A	355	L-phenylalanine dehydrogenase; amino acid dehydrog	94.83
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	94.8
3ucx_A	264	Short chain dehydrogenase; ssgcid, seattle structu	94.79
1u8f_O	335	GAPDH, glyceraldehyde-3-phosphate dehydrogenase, l	94.73
3cps_A	354	Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, g	94.71
3qiv_A	253	Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR	94.71
2ywl_A	180	Thioredoxin reductase related protein; uncharacter	94.7
3imf_A	257	Short chain dehydrogenase; structural genomics, in	94.66
3f1l_A	252	Uncharacterized oxidoreductase YCIK; E. coli, NADP	94.65
3m2p_A	311	UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J	94.64
1yvv_A	336	Amine oxidase, flavin-containing; oxidoreductase,	94.64
3sju_A	279	Keto reductase; short-chain dehydrogenase, oxidore	94.62
2nwq_A	272	Probable short-chain dehydrogenase; oxidoreductase	94.6
4gx0_A	565	TRKA domain protein; membrane protein, ION channel	94.57
1ryi_A	382	Glycine oxidase; flavoprotein, protein-inhibitor c	94.51
1vl8_A	267	Gluconate 5-dehydrogenase; TM0441, structural geno	94.51
2gdz_A	267	NAD+-dependent 15-hydroxyprostaglandin dehydrogen;	94.47
3ged_A	247	Short-chain dehydrogenase/reductase SDR; SCOR, ros	94.45
3f9i_A	249	3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto	94.43
2z1n_A	260	Dehydrogenase; reductase, SDR, oxidoreductase; 1.8	94.43
3c1o_A	321	Eugenol synthase; phenylpropene, PIP reductase, sh	94.42
3ip3_A	337	Oxidoreductase, putative; structural genomics, PSI	94.42
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	94.41
1c0p_A	363	D-amino acid oxidase; alpha-beta-alpha motif, flav	94.41
3l77_A	235	Short-chain alcohol dehydrogenase; oxidoreductase;	94.39
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	94.38
3enk_A	341	UDP-glucose 4-epimerase; seattle structural genomi	94.35
3ing_A	325	Homoserine dehydrogenase; NP_394635.1, structural	94.34
3tfo_A	264	Putative 3-oxoacyl-(acyl-carrier-protein) reducta;	94.28
3rp8_A	407	Flavoprotein monooxygenase; FAD-binding protein, o	94.28
3lyl_A	247	3-oxoacyl-(acyl-carrier-protein) reductase; alpha	94.27
1ys4_A	354	Aspartate-semialdehyde dehydrogenase; oxidoreducta	94.26
3asu_A	248	Short-chain dehydrogenase/reductase SDR; SDR famil	94.23
3lf2_A	265	Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross	94.21
3guy_A	230	Short-chain dehydrogenase/reductase SDR; structura	94.21
2jah_A	247	Clavulanic acid dehydrogenase; short-chain dehydro	94.21
2rhc_B	277	Actinorhodin polyketide ketoreductase; oxidoreduct	94.2
1iy8_A	267	Levodione reductase; oxidoreductase; HET: NAD; 1.6	94.2
1xg5_A	279	ARPG836; short chain dehydrogenase, human, SGC, st	94.19
1geg_A	256	Acetoin reductase; SDR family, oxidoreductase; HET	94.19
2cfc_A	250	2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidor	94.19
3r1i_A	276	Short-chain type dehydrogenase/reductase; structur	94.18
2vou_A	397	2,6-dihydroxypyridine hydroxylase; oxidoreductase,	94.17
3dii_A	247	Short-chain dehydrogenase/reductase SDR; SCOR, ros	94.17
3o26_A	311	Salutaridine reductase; short chain dehydrogenase/	94.16
3tjr_A	301	Short chain dehydrogenase; structural genomics, se	94.16
2jl1_A	287	Triphenylmethane reductase; oxidoreductase, biorem	94.13
4ffl_A	363	PYLC; amino acid, biosynthesis of pyrrolysine, iso	94.13
3nrn_A	421	Uncharacterized protein PF1083; alpha-beta protein	94.12
3alj_A	379	2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG;	94.12
3ioy_A	319	Short-chain dehydrogenase/reductase SDR; structura	94.12
3awd_A	260	GOX2181, putative polyol dehydrogenase; oxidoreduc	94.11
4e6p_A	259	Probable sorbitol dehydrogenase (L-iditol 2-dehyd;	94.1
2gf3_A	389	MSOX, monomeric sarcosine oxidase; flavoprotein ox	94.1
1hdo_A	206	Biliverdin IX beta reductase; foetal metabolism, H	94.09
2uzz_A	372	N-methyl-L-tryptophan oxidase; N-methyltryptophan	94.08
2r6j_A	318	Eugenol synthase 1; phenylpropene, PIP reductase,	94.07

>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A*

Probab=100.00  E-value=1.8e-57  Score=472.92  Aligned_cols=331  Identities=31%  Similarity=0.420  Sum_probs=288.2

Q ss_pred             CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceec
Q psy9056           1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLV   80 (359)
Q Consensus         1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~   80 (359)
                      |+|+||||+|+++||||||+++  ++|++||+++|++|++|++++|++++|..+|++|++||++++|+||+++||||+++
T Consensus       115 G~a~GGG~elalacD~ria~~~--a~fg~pev~lGl~Pg~ggt~rL~rlvG~~~A~~l~ltG~~i~a~eA~~~GLv~~vv  192 (742)
T 3zwc_A          115 GVALGGGLELALGCHYRIANAK--ARVGLPEVTLGILPGARGTQLLPRVVGVPVALDLITSGKYLSADEALRLGILDAVV  192 (742)
T ss_dssp             SEEETHHHHHHHTSSEEEEETT--CEEECGGGGGTCCCTTTHHHHHHHHHCHHHHHHHHHHCCCEEHHHHHHHTSCSEEE
T ss_pred             ccchHHHHHHHHhcCEEEEcCC--CEEECcccCcccCCCccHHHHHHHhhhHHHHHHHHHcCCchhHHHHHHcCCccEec
Confidence            6899999999999999999998  99999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCcccccc-CCCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHhhCCCCCc
Q psy9056          81 EPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINR-TKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPA  159 (359)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~-~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (359)
                      |+             +. .+.+.++++++++.++...+ .+...+ .        .......+......+. +...++++
T Consensus       193 ~~-------------d~-~~~A~~~A~~ia~~~~~~~~~~~~~~~-~--------~~~~~~~~~~~~~~~~-k~~~~~~A  248 (742)
T 3zwc_A          193 KS-------------DP-VEEAIKFAQKIIDKPIEPRRIFNKPVP-S--------LPNMDSVFAEAIAKVR-KQYPGVLA  248 (742)
T ss_dssp             SS-------------CH-HHHHHHHHHHHTTSCSGGGCGGGSCCC-C--------CTTHHHHHHHHHHHHH-HHSTTCHH
T ss_pred             Cc-------------hh-hHHHHHHHHHHhcCCchhhhhhccccc-c--------cchhhhhHHHHHHHHh-hhccchhH
Confidence            97             54 46888999999998875444 322220 0        1112223333333333 34567899


Q ss_pred             HHHHHHHHHHhhccChhhHHHHHHHHhhhhhcChhhHHHHHhHhhhhhhhhcCC-------CCCCCCccEEEEECCCcch
Q psy9056         160 PLKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQTECKKNRL-------GKPQTPVKTVAVLGAGLMG  232 (359)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~s~~~~~~~~af~~k~~~~~~~~-------~~~~~~~~kI~IIG~G~mG  232 (359)
                      +..++++++.+...+++++++.|.+.|.+++.|+++++++++|+++|++++.+.       ..+.++|++|+|||+|.||
T Consensus       249 ~~~~~~~v~~~~~~~~~~gl~~E~~~F~~l~~s~~~k~~~~aFf~~r~~~k~~~~~~~~~~~~~~~~i~~v~ViGaG~MG  328 (742)
T 3zwc_A          249 PETCVRSIQASVKHPYEVGIKEEEKLFMYLRASGQAKALQYAFFAEKSANKWSTPSGASWKTASAQPVSSVGVLGLGTMG  328 (742)
T ss_dssp             HHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHTTSCBCTTCCBTTTCCCCCCCEEEEECCSHHH
T ss_pred             HHHHHHHHHHHhhCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccccccccccccccCcccccEEEEEcccHHH
Confidence            999999999999999999999999999999999999999999999999876432       3456889999999999999


Q ss_pred             HHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcCCCCCccEEEEcccCCHH
Q psy9056         233 AGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPFKNADMVIEAVFEDIN  312 (359)
Q Consensus       233 ~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~aD~Vi~avp~~~~  312 (359)
                      ++||..++++|++|+++|++++.++.+...+...++.....+..+..  .....+++++++++.+++||+||||+||+.+
T Consensus       329 ~gIA~~~a~aG~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~aDlVIEAV~E~l~  406 (742)
T 3zwc_A          329 RGIAISFARVGISVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQ--ASAKPKLRFSSSTKELSTVDLVVEAVFEDMN  406 (742)
T ss_dssp             HHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHTTTC--CCCCCCEEEESCGGGGGSCSEEEECCCSCHH
T ss_pred             HHHHHHHHhCCCchhcccchHhhhhhHHHHHHHHHHHHHHhccccch--hhhhhhhcccCcHHHHhhCCEEEEeccccHH
Confidence            99999999999999999999999999999998888877776654432  2334678888999999999999999999999


Q ss_pred             HHHHHHHHHHHhCCCCcEEEEcCCCCcHHHHHhhcCCCCcEEeecCC
Q psy9056         313 IKHQVIKEIEAVVPPHCVVATNTSAIPITKIAAASKRPDKVRNMGRI  359 (359)
Q Consensus       313 ~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~rvig~h~~  359 (359)
                      +|+++|++|.+++++++||+||||+++++++++.+.+|+||+|+|||
T Consensus       407 iK~~vf~~le~~~~~~aIlASNTSsl~i~~ia~~~~~p~r~ig~HFf  453 (742)
T 3zwc_A          407 LKKKVFAELSALCKPGAFLCTNTSALNVDDIASSTDRPQLVIGTHFF  453 (742)
T ss_dssp             HHHHHHHHHHHHSCTTCEEEECCSSSCHHHHHTTSSCGGGEEEEECC
T ss_pred             HHHHHHHHHhhcCCCCceEEecCCcCChHHHHhhcCCcccccccccc
Confidence            99999999999999999999999999999999999999999999998

>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana}

Probab=100.00  E-value=2.5e-55  Score=458.60  Aligned_cols=334  Identities=36%  Similarity=0.562  Sum_probs=296.5

Q ss_pred             CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceec
Q psy9056           1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLV   80 (359)
Q Consensus         1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~   80 (359)
                      |.|+|||++|+++||||||+++  ++|++||+++|++|++|++++|++++|..+|++|++||++++|+||+++||||+++
T Consensus       111 G~a~GgG~elalacD~ria~~~--a~fglpev~lGl~P~~Ggt~~L~rlvG~~~A~~l~ltG~~~~a~eA~~~GLv~~vv  188 (725)
T 2wtb_A          111 GLALGGGLELAMACHARISAPA--AQLGLPELQLGVIPGFGGTQRLPRLVGLTKALEMILTSKPVKAEEGHSLGLIDAVV  188 (725)
T ss_dssp             SEEETHHHHHHHHSSEEEECTT--CEEECCGGGGTCCCCSSHHHHHHHHHCHHHHHHHHHHCCCEEHHHHHHHTSCSEEC
T ss_pred             CccCcccHHHHHhCCEEEEcCC--CEEeCchhccCCCCCccHHHHHHHhcCHHHHHHHHHcCCCCCHHHHHHCCccceEc
Confidence            6799999999999999999998  99999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCc-cc--cccCCCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHhhCCCC
Q psy9056          81 EPLGPGLNHPEERTMEYLEEVAVNTASQLASGK-LK--INRTKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLY  157 (359)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~-~~--~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (359)
                      |+             +++.+.+.+++++++..+ +.  ..+.+...|        ....... .+.+.+..+.++.++ +
T Consensus       189 ~~-------------~~l~~~a~~~a~~la~~~~p~~~~~~~~~~~~--------~~~~~~~-~~~~a~~~~~~~~~g-~  245 (725)
T 2wtb_A          189 PP-------------AELVTTARRWALDIVGRRKPWVSSVSKTDKLP--------PLGEARE-ILTFAKAQTLKRAPN-M  245 (725)
T ss_dssp             CT-------------TTHHHHHHHHHHHHHTTSSCCCCGGGCCTTSC--------CHHHHHH-HHHHHHHHHHHHCTT-C
T ss_pred             Ch-------------hHHHHHHHHHHHHHHhcCCChhhhhhhccccC--------ccchHHH-HHHHHHHHHHHhccC-C
Confidence            98             789999999999998872 22  111000010        0112233 778889999999998 9


Q ss_pred             CcHHHHHHHHHHhhccChhhHHHHHHHHhhhhhcChhhHHHHHhHhhhhhhhhcCCC----CCCCCccEEEEECCCcchH
Q psy9056         158 PAPLKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQTECKKNRLG----KPQTPVKTVAVLGAGLMGA  233 (359)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~s~~~~~~~~af~~k~~~~~~~~~----~~~~~~~kI~IIG~G~mG~  233 (359)
                      |++..++++++.+...+++++++.|.+.|..++.|+|+++++++|++||++++.+.+    .++++|++|+|||+|.||+
T Consensus       246 pA~~~~k~~~~~~~~~~~~~~l~~E~~~~~~l~~s~~~~~~~~aF~~kr~~~~~~~~~~~~~~~~~~~kV~VIGaG~MG~  325 (725)
T 2wtb_A          246 KHPLMCLDAIEVGIVSGPRAGLEKEAEVASQVVKLDTTKGLIHVFFSQRGTAKVPGVTDRGLVPRKIKKVAIIGGGLMGS  325 (725)
T ss_dssp             CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGCCTTTSSSCCCCCCCCCEEEECCSHHHH
T ss_pred             cHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhcchhHHHHHHHhhhhhhhcccCCCCccccccccCcEEEEEcCCHhhH
Confidence            999999999999999999999999999999999999999999999999999887642    2457889999999999999


Q ss_pred             HHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcCCCCCccEEEEcccCCHHH
Q psy9056         234 GIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPFKNADMVIEAVFEDINI  313 (359)
Q Consensus       234 ~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~aD~Vi~avp~~~~~  313 (359)
                      +||..++++|++|++||++++.++.+...+++.+++..+.|.+++.......++++++++++.+++||+||+|+|++.++
T Consensus       326 ~iA~~la~aG~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~d~~~~~~aDlVIeaVpe~~~v  405 (725)
T 2wtb_A          326 GIATALILSNYPVILKEVNEKFLEAGIGRVKANLQSRVRKGSMSQEKFEKTMSLLKGSLDYESFRDVDMVIEAVIENISL  405 (725)
T ss_dssp             HHHHHHHTTTCCEEEECSSHHHHHHHHHHHHHHHHHTTC----CTTHHHHTTTSEEEESSSGGGTTCSEEEECCCSCHHH
T ss_pred             HHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcceEEeCCHHHHCCCCEEEEcCcCCHHH
Confidence            99999999999999999999999998888888888888888888777777888999999998899999999999999999


Q ss_pred             HHHHHHHHHHhCCCCcEEEEcCCCCcHHHHHhhcCCCCcEEeecCC
Q psy9056         314 KHQVIKEIEAVVPPHCVVATNTSAIPITKIAAASKRPDKVRNMGRI  359 (359)
Q Consensus       314 k~~v~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~rvig~h~~  359 (359)
                      |+.+++++.+++++++||+||||+++++++++.+..|++++|+|||
T Consensus       406 k~~v~~~l~~~~~~~~IlasntStl~i~~la~~~~~p~~~iG~hf~  451 (725)
T 2wtb_A          406 KQQIFADLEKYCPQHCILASNTSTIDLNKIGERTKSQDRIVGAHFF  451 (725)
T ss_dssp             HHHHHHHHHHHSCTTCEEEECCSSSCHHHHTTTCSCTTTEEEEEEC
T ss_pred             HHHHHHHHHhhCCCCcEEEeCCCCCCHHHHHHHhcCCCCEEEecCC
Confidence            9999999999999999999999999999999999899999999997

>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A*

Probab=100.00  E-value=3.2e-55  Score=457.51  Aligned_cols=335  Identities=35%  Similarity=0.515  Sum_probs=300.5

Q ss_pred             CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceec
Q psy9056           1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLV   80 (359)
Q Consensus         1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~   80 (359)
                      |.|+|||++|+++||||||+++  ++|++||+++|++|++|++++|++++|..+|++|++||++++|+||+++||||+++
T Consensus       112 G~a~GgG~elalacD~ria~~~--a~fglpev~lGl~P~~ggt~~L~r~vG~~~A~~l~ltG~~~~a~eA~~~GLv~~vv  189 (715)
T 1wdk_A          112 GIALGGGLEMCLAADFRVMADS--AKIGLPEVKLGIYPGFGGTVRLPRLIGVDNAVEWIASGKENRAEDALKVSAVDAVV  189 (715)
T ss_dssp             SCEETHHHHHHHTSSEEEEETT--CEEECGGGGGTCCCCSSHHHHHHHHHCHHHHHHHHHHCCCEEHHHHHHTTSSSEEE
T ss_pred             CEeeHHHHHHHHHCCEEEEeCC--CEEeChhhccCCCCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHCCCceEEe
Confidence            6899999999999999999998  99999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCcchhhHHHHHHHHHHHHHHHhcC--ccccccCC---CCCCchhhhhhhhhhhhhhHHHHHHHHHHHHhhCC
Q psy9056          81 EPLGPGLNHPEERTMEYLEEVAVNTASQLASG--KLKINRTK---PMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGG  155 (359)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~--~~~~~~~k---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (359)
                      |+             +++.+.+.+++++++..  |.......   +..         .....+...+...+..+.+++++
T Consensus       190 ~~-------------~~l~~~a~~~a~~la~~~~~~~~~~~~~~~p~~---------~~~~~~~~~~~~~k~~~~~~~~g  247 (715)
T 1wdk_A          190 TA-------------DKLGAAALDLIKRAISGELDYKAKRQPKLEKLK---------LNAIEQMMAFETAKGFVAGQAGP  247 (715)
T ss_dssp             CG-------------GGHHHHHHHHHHHHHTTSSCHHHHHGGGGSCCS---------CCHHHHHHHHHHHHHHHHHHHCT
T ss_pred             Ch-------------HHHHHHHHHHHHHHhhccCCcchhcccccCccc---------cCchhHHHHHHHHHHHHHHhccc
Confidence            98             88999999999999876  32111100   000         00122333567778889999999


Q ss_pred             CCCcHHHHHHHHHHhhccChhhHHHHHHHHhhhhhcChhhHHHHHhHhhhhhhhhcCC--CCCCCCccEEEEECCCcchH
Q psy9056         156 LYPAPLKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQTECKKNRL--GKPQTPVKTVAVLGAGLMGA  233 (359)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~s~~~~~~~~af~~k~~~~~~~~--~~~~~~~~kI~IIG~G~mG~  233 (359)
                      +||+|..++++++.+...+++++++.|.+.|.+++.|+|+++++++|++||++++.+.  ..+++++++|+|||+|+||.
T Consensus       248 ~~~A~~~~k~~v~~~~~~~~~~~l~~E~~~~~~l~~s~~~~~~~~aF~~kr~~~~~~~~~~~~~~~i~kV~VIGaG~MG~  327 (715)
T 1wdk_A          248 NYPAPVEAIKTIQKAANFGRDKALEVEAAGFAKLAKTSASNCLIGLFLNDQELKKKAKVYDKIAKDVKQAAVLGAGIMGG  327 (715)
T ss_dssp             TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCSSEEEECCHHHHH
T ss_pred             CCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhHHHHHHHHHhhhhhhccccCCCCccccCCEEEEECCChhhH
Confidence            9999999999999999999999999999999999999999999999999999987643  22557899999999999999


Q ss_pred             HHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcCCCCCccEEEEcccCCHHH
Q psy9056         234 GIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPFKNADMVIEAVFEDINI  313 (359)
Q Consensus       234 ~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~aD~Vi~avp~~~~~  313 (359)
                      +||..++++|++|++||++++.++.+...+.+.+++..+.|.+++.......++++++++++.+++||+||+|+|++.++
T Consensus       328 ~iA~~la~aG~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~d~~~~~~aDlVIeaV~e~~~v  407 (715)
T 1wdk_A          328 GIAYQSASKGTPILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRPTLSYGDFGNVDLVVEAVVENPKV  407 (715)
T ss_dssp             HHHHHHHHTTCCEEEECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEEESSSTTGGGCSEEEECCCSCHHH
T ss_pred             HHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcCeEEECCHHHHCCCCEEEEcCCCCHHH
Confidence            99999999999999999999999998888888899889999888877777788899888998899999999999999999


Q ss_pred             HHHHHHHHHHhCCCCcEEEEcCCCCcHHHHHhhcCCCCcEEeecCC
Q psy9056         314 KHQVIKEIEAVVPPHCVVATNTSAIPITKIAAASKRPDKVRNMGRI  359 (359)
Q Consensus       314 k~~v~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~rvig~h~~  359 (359)
                      |+.+++++.+++++++||+|+||+++++++++.+..+++++|+|||
T Consensus       408 k~~v~~~l~~~~~~~~IlasntStl~i~~la~~~~~~~~~ig~hf~  453 (715)
T 1wdk_A          408 KQAVLAEVENHVREDAILASNTSTISISLLAKALKRPENFVGMHFF  453 (715)
T ss_dssp             HHHHHHHHHTTSCTTCEEEECCSSSCHHHHGGGCSCGGGEEEEECC
T ss_pred             HHHHHHHHHhhCCCCeEEEeCCCCCCHHHHHHHhcCccceEEEEcc
Confidence            9999999999999999999999999999999999889999999997

>3hrx_A Probable enoyl-COA hydratase; the spiral fold, the crotonase superfamily, lyase; 1.85A {Thermus thermophilus}

Probab=100.00  E-value=3.4e-33  Score=257.65  Aligned_cols=153  Identities=23%  Similarity=0.244  Sum_probs=144.3

Q ss_pred             CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceec
Q psy9056           1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLV   80 (359)
Q Consensus         1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~   80 (359)
                      |+|+|||++|+++||||||+++  ++|++||+++|++|++|++++|++++|..+|++|++||++++++||+++||||+++
T Consensus       100 G~a~GgG~~lalacD~ria~~~--a~f~~pe~~lGl~p~~g~~~~L~r~vG~~~A~~llltg~~i~A~eA~~~GLv~~vv  177 (254)
T 3hrx_A          100 GVAAGAGMSLALWGDLRLAAVG--ASFTTAFVRIGLVPDSGLSFLLPRLVGLAKAQELLLLSPRLSAEEALALGLVHRVV  177 (254)
T ss_dssp             SEEETHHHHHHTTCSEEEEETT--CEEECCGGGGTCCCCTTHHHHHHHHHCHHHHHHHHHHCCCEEHHHHHHHTSCSEEE
T ss_pred             CEeeehhhhhhhccceeeEcCC--CEEEchhhCcCcCCcccHHHHHHHHhCcchHHHHhhcCcccCHHHHHHCCCeEEec
Confidence            6899999999999999999998  99999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccccccCCCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHhhCCCCCcH
Q psy9056          81 EPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAP  160 (359)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (359)
                      |+             +++.+.+.+++.+++..++.                                           +.
T Consensus       178 ~~-------------~~l~~~a~~~a~~la~~~~~-------------------------------------------a~  201 (254)
T 3hrx_A          178 PA-------------EKLMEEALSLAKELAQGPTR-------------------------------------------AY  201 (254)
T ss_dssp             CG-------------GGHHHHHHHHHHHHHTSCHH-------------------------------------------HH
T ss_pred             Cc-------------HHHHHHHHHHHHHhhccchH-------------------------------------------HH
Confidence            98             88999999999999998873                                           23


Q ss_pred             HHHHHHHHHhhccChhhHHHHHHHHhhhhhcChhhHHHHHhHhhhhhhhhc
Q psy9056         161 LKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQTECKKN  211 (359)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~s~~~~~~~~af~~k~~~~~~  211 (359)
                      ..+|++++.....+++++++.|.+.+..++.|+|++||+++|++||+|+|.
T Consensus       202 ~~~K~~~~~~~~~~~~~~l~~e~~~~~~~~~s~d~~Eg~~AF~eKR~P~f~  252 (254)
T 3hrx_A          202 ALTKKLLLETYRLSLTEALALEAVLQGQAGQTQDHEEGVRAFREKRPPRFQ  252 (254)
T ss_dssp             HHHHHHHHHGGGSCHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTTSCCCCC
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHhCCCCCCCC
Confidence            356788888889999999999999999999999999999999999999884

>4fzw_A 2,3-dehydroadipyl-COA hydratase; structural genomics, montreal-kingston bacterial structural initiative, BSGI, crotonase fold; 2.55A {Escherichia coli}

Probab=99.98  E-value=1.7e-32  Score=253.44  Aligned_cols=153  Identities=27%  Similarity=0.383  Sum_probs=144.1

Q ss_pred             CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceec
Q psy9056           1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLV   80 (359)
Q Consensus         1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~   80 (359)
                      |+|+|||++|+++|||||++++  ++|++||+++|++|++|++++|++++|..++++|++||++++++||+++||||+++
T Consensus       104 G~a~GgG~~lalacD~ria~~~--a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~A~~llltg~~i~a~eA~~~GLv~~vv  181 (258)
T 4fzw_A          104 GYALGAGCELALLCDVVVAGEN--ARFGLPEITLGIMPGAGGTQRLIRSVGKSLASKMVLSGESITAQQAQQAGLVSDVF  181 (258)
T ss_dssp             SEEETHHHHHHHHSSEEEEETT--CEEECCGGGGTCCCCSSHHHHHHHHHCHHHHHHHHHHCCCEEHHHHHHHTSCSEEE
T ss_pred             CcceeeeeEeecccceEEECCC--CEEECcccCCCcCCCchHHHHHHHHhCHHHHHHHHHcCCcCcHHHHHHCCCeeEEe
Confidence            6899999999999999999998  99999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccccccCCCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHhhCCCCCcH
Q psy9056          81 EPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAP  160 (359)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (359)
                      |+             +++.+.+.+++.+++..++.                                           +.
T Consensus       182 ~~-------------~~l~~~a~~~a~~la~~~p~-------------------------------------------a~  205 (258)
T 4fzw_A          182 PS-------------DLTLEYALQLASKMARHSPL-------------------------------------------AL  205 (258)
T ss_dssp             CT-------------TTHHHHHHHHHHHHTTSCHH-------------------------------------------HH
T ss_pred             Cc-------------hHHHHHHHHHHHHHHhCCHH-------------------------------------------HH
Confidence            98             88999999999999998873                                           23


Q ss_pred             HHHHHHHHHhhccChhhHHHHHHHHhhhhhcChhhHHHHHhHhhhhhhhhc
Q psy9056         161 LKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQTECKKN  211 (359)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~s~~~~~~~~af~~k~~~~~~  211 (359)
                      ..+|++++.....+++++++.|.+.+..++.|+|++||+++|++||+|+|.
T Consensus       206 ~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~Eg~~AF~eKR~P~f~  256 (258)
T 4fzw_A          206 QAAKQALRQSQEVALQAGLAQERQLFTLLAATEDRHEGISAFLQKRTPDFK  256 (258)
T ss_dssp             HHHHHHHHHHTTSCHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTTSCCCCC
T ss_pred             HHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHhCCCCCCCC
Confidence            357788888888999999999999999999999999999999999999884

>4fzw_C 1,2-epoxyphenylacetyl-COA isomerase; structural genomics, montreal-kingston bacterial structural initiative, BSGI, crotonase fold; 2.55A {Escherichia coli}

Probab=99.98  E-value=3.6e-32  Score=253.28  Aligned_cols=153  Identities=22%  Similarity=0.249  Sum_probs=143.2

Q ss_pred             CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceec
Q psy9056           1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLV   80 (359)
Q Consensus         1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~   80 (359)
                      |+|+|||++|+++||||||+++  ++|++||+++|++|++|++++|++++|..+|++|++||++++|+||+++||||+++
T Consensus       120 G~a~GgG~~lalacD~ria~~~--a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~A~~llltg~~i~A~eA~~~GLv~~vv  197 (274)
T 4fzw_C          120 GVAAGAGATLALGGDIVIAARS--AKFVMAFSKLGLIPDCGGTWLLPRVAGRARAMGLALLGNQLSAEQAHEWGMIWQVV  197 (274)
T ss_dssp             SCEETHHHHHHHTSSEEEEETT--CEEECCGGGTTCCCTTTHHHHHHHHTCHHHHHHHHHHCCCEEHHHHHHTTSSSEEE
T ss_pred             CceeecCceeeeccceEEECCC--CEEECcccCcccCCCccHHHHHHHHhhHHHHHHHHHhCCcCCHHHHHHCCCceEEe
Confidence            6899999999999999999998  99999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccccccCCCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHhhCCCCCcH
Q psy9056          81 EPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAP  160 (359)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (359)
                      |+             +++.+.+.+++++++..|+.                                           +.
T Consensus       198 ~~-------------~~l~~~a~~~a~~la~~~~~-------------------------------------------a~  221 (274)
T 4fzw_C          198 DD-------------ETLADTAQQLARHLATQPTF-------------------------------------------GL  221 (274)
T ss_dssp             CG-------------GGHHHHHHHHHHHHTTSCHH-------------------------------------------HH
T ss_pred             Ch-------------HHHHHHHHHHHHHHHcCCHH-------------------------------------------HH
Confidence            98             88999999999999998772                                           23


Q ss_pred             HHHHHHHHHhhccChhhHHHHHHHHhhhhhcChhhHHHHHhHhhhhhhhhc
Q psy9056         161 LKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQTECKKN  211 (359)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~s~~~~~~~~af~~k~~~~~~  211 (359)
                      ..+|++++.....+++++++.|.+.+..++.|+|++||+++|++||+|+|.
T Consensus       222 ~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~Egv~AF~eKR~P~f~  272 (274)
T 4fzw_C          222 GLIKQAINSAETNTLDTQLDLERDYQRLAGRSADYREGVSAFLAKRSPQFT  272 (274)
T ss_dssp             HHHHHHHHHHTSSCHHHHHHHHHHHHHHHTTSHHHHHHHHHHHC-CCCCCC
T ss_pred             HHHHHHHHHhhhCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHhCCCCCCCC
Confidence            357788888888999999999999999999999999999999999999884

>3hin_A Putative 3-hydroxybutyryl-COA dehydratase; structural genomics, protein structure INI NEW YORK structural genomix research consortium; 2.00A {Rhodopseudomonas palustris}

Probab=99.97  E-value=8.4e-32  Score=250.75  Aligned_cols=157  Identities=22%  Similarity=0.260  Sum_probs=142.6

Q ss_pred             CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceec
Q psy9056           1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLV   80 (359)
Q Consensus         1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~   80 (359)
                      |+|+|||++|+++||+||++++  ++|++||+++|++|++|++++|++++|..++++|++||++++|+||+++||||+++
T Consensus       115 G~a~GgG~~lalacD~ria~~~--a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~A~~l~ltG~~i~A~eA~~~GLv~~vv  192 (275)
T 3hin_A          115 GAVIGGGLELACAAHIRVAEAS--AYYALPEGSRGIFVGGGGSVRLPRLIGVARMADMMLTGRVYSAAEGVVHGFSQYLI  192 (275)
T ss_dssp             SEEETHHHHHHHHSSEEEEETT--CEEECGGGGGTCCCCSSHHHHHHHHHCHHHHHHHHHHCCCEEHHHHHHHTSCSEEE
T ss_pred             CeeehHHHHHHHhCCEEEEcCC--CEEECchhccCCCCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHCCCCCEEe
Confidence            6899999999999999999998  99999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccccccCCCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHhhCCCCCcH
Q psy9056          81 EPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAP  160 (359)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (359)
                      |+             +++.+.+.+++++|+..++.                                           +.
T Consensus       193 ~~-------------~~l~~~a~~~a~~ia~~~p~-------------------------------------------a~  216 (275)
T 3hin_A          193 EN-------------GSAYDKALELGNRVAQNAPL-------------------------------------------TN  216 (275)
T ss_dssp             SS-------------SCHHHHHHHHHHHHTTSCHH-------------------------------------------HH
T ss_pred             Ch-------------hHHHHHHHHHHHHHHhCCHH-------------------------------------------HH
Confidence            98             78999999999999998772                                           23


Q ss_pred             HHHHHHHHHhhccChhhHHHHHHHHhhhhhcChhhHHHHHhHhhhhhhhhcCCCC
Q psy9056         161 LKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQTECKKNRLGK  215 (359)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~s~~~~~~~~af~~k~~~~~~~~~~  215 (359)
                      ..+|++++.....+++++++.|.+.+..++.|+|++||+++|++||+|+|...+.
T Consensus       217 ~~~K~~l~~~~~~~~~~~l~~e~~~~~~~~~s~d~~eg~~AF~ekR~p~f~~~~~  271 (275)
T 3hin_A          217 FAVLQALPMIAEANPQTGLLMESLMATVAQSDQEAKTRIRAFLDHKTAKVREGHH  271 (275)
T ss_dssp             HHHHTHHHHHHHSCHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHC-----
T ss_pred             HHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCCCCCCCCC
Confidence            3566777888888999999999999999999999999999999999999965443

>3kqf_A Enoyl-COA hydratase/isomerase family protein; IDP02329, structural genomic for structural genomics of infectious diseases, csgid; HET: MSE; 1.80A {Bacillus anthracis}

Probab=99.97  E-value=2.3e-31  Score=246.72  Aligned_cols=153  Identities=29%  Similarity=0.456  Sum_probs=144.0

Q ss_pred             CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceec
Q psy9056           1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLV   80 (359)
Q Consensus         1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~   80 (359)
                      |+|+|||++|+++|||||++++  ++|++||+++|++|++|++++|++++|..++++|++||++++++||+++||||+++
T Consensus       111 G~a~GgG~~lalacD~ria~~~--a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~A~~l~ltg~~~~a~eA~~~GLv~~vv  188 (265)
T 3kqf_A          111 GIALGGGTELSLACDFRIAAES--ASLGLTETTLAIIPGAGGTQRLPRLIGVGRAKELIYTGRRISAQEAKEYGLVEFVV  188 (265)
T ss_dssp             SEEETHHHHHHHHSSEEEEETT--CEEECCGGGGTCCCCSSHHHHHHHHHCHHHHHHHHHHCCCEEHHHHHHHTSCSEEE
T ss_pred             CeeehHHHHHHHhCCEEEEcCC--cEEECcccccCcCCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHCCCccEEe
Confidence            6799999999999999999998  99999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccccccCCCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHhhCCCCCcH
Q psy9056          81 EPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAP  160 (359)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (359)
                      |+             +++.+.+.+++++|+..++.                                           +.
T Consensus       189 ~~-------------~~l~~~a~~~a~~la~~~p~-------------------------------------------a~  212 (265)
T 3kqf_A          189 PV-------------HLLEEKAIEIAEKIASNGPI-------------------------------------------AV  212 (265)
T ss_dssp             CG-------------GGHHHHHHHHHHHHHTSCHH-------------------------------------------HH
T ss_pred             CH-------------HHHHHHHHHHHHHHHcCCHH-------------------------------------------HH
Confidence            98             88999999999999988762                                           33


Q ss_pred             HHHHHHHHHhhccChhhHHHHHHHHhhhhhcChhhHHHHHhHhhhhhhhhc
Q psy9056         161 LKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQTECKKN  211 (359)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~s~~~~~~~~af~~k~~~~~~  211 (359)
                      ..+|++++.+...+++++++.|.+.+..++.|+|++||+++|++||+|+|.
T Consensus       213 ~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~eg~~af~ekr~p~f~  263 (265)
T 3kqf_A          213 RLAKEAISNGIQVDLHTGLQMEKQAYEGVIHTKDRLEGLQAFKEKRTPMYK  263 (265)
T ss_dssp             HHHHHHHHHHTTSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHTTSCCCCC
T ss_pred             HHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCCCCC
Confidence            467788888888999999999999999999999999999999999998874

>3trr_A Probable enoyl-COA hydratase/isomerase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.09A {Mycobacterium abscessus}

Probab=99.97  E-value=3.6e-31  Score=244.26  Aligned_cols=153  Identities=22%  Similarity=0.357  Sum_probs=143.9

Q ss_pred             CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceec
Q psy9056           1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLV   80 (359)
Q Consensus         1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~   80 (359)
                      |.|+|||++|+++||||||+++  ++|++||+++|++|++|++++|++++|..++++|++||++++++||+++||||+++
T Consensus       102 G~a~GgG~~lalacD~~ia~~~--a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~ltg~~~~a~eA~~~GLv~~vv  179 (256)
T 3trr_A          102 GFALAGGTELVLSCDLVVAGRS--AKFGIPEVKRGLVAGAGGLLRLPNRIPYQVAMELALTGESFTAEDAAKYGFINRLV  179 (256)
T ss_dssp             SBCCTHHHHHHHTSSEEEEETT--CEECCCGGGGTCCCCSSHHHHHHHHSCHHHHHHHHHHCCCEEHHHHGGGTCCSEEE
T ss_pred             CeeeechhHHHHhCCEEEECCC--CEEEehhhccCCCCCccHHHHHHHHhCHHHHHHHHHhCCCcCHHHHHHCCCeeEec
Confidence            6899999999999999999998  99999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccccccCCCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHhhCCCCCcH
Q psy9056          81 EPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAP  160 (359)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (359)
                      |+             +++.+.+.+++++++..++.                                           +.
T Consensus       180 ~~-------------~~l~~~a~~~a~~la~~~~~-------------------------------------------a~  203 (256)
T 3trr_A          180 DD-------------GQALDTALELAAKITANGPL-------------------------------------------AV  203 (256)
T ss_dssp             CT-------------TCHHHHHHHHHHHHHTSCHH-------------------------------------------HH
T ss_pred             Ch-------------HHHHHHHHHHHHHHHcCCHH-------------------------------------------HH
Confidence            98             78999999999999998762                                           23


Q ss_pred             HHHHHHHHHhhccChhhHHHHHHHHhhhhhcChhhHHHHHhHhhhhhhhhc
Q psy9056         161 LKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQTECKKN  211 (359)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~s~~~~~~~~af~~k~~~~~~  211 (359)
                      ..+|++++.....+++++++.|.+.+..++.|+|++||+++|++||+|+|.
T Consensus       204 ~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~eg~~af~ekr~p~f~  254 (256)
T 3trr_A          204 AATKRIIIESASWAPEEAFAKQGEILMPIFVSEDAKEGAKAFAEKRAPVWQ  254 (256)
T ss_dssp             HHHHHHHHHGGGSCHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTTSCCCCC
T ss_pred             HHHHHHHHhhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHhcCCCCCCC
Confidence            357788888888999999999999999999999999999999999998874

>3h81_A Enoyl-COA hydratase ECHA8; niaid, decode, infectious disease, MPCS, fatty acid metaboli metabolism, lyase, structural genomics; 1.80A {Mycobacterium tuberculosis} PDB: 3q0j_A* 3pzk_A 3q0g_A*

Probab=99.97  E-value=2.5e-31  Score=247.92  Aligned_cols=153  Identities=27%  Similarity=0.373  Sum_probs=144.1

Q ss_pred             CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceec
Q psy9056           1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLV   80 (359)
Q Consensus         1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~   80 (359)
                      |+|+|||++|+++|||||++++  ++|++||+++|++|++|++++|++++|..++++|++||++++++||+++||||+++
T Consensus       124 G~a~GgG~~LalacD~ria~~~--a~f~~pe~~lGl~p~~g~~~~L~r~vG~~~A~~l~ltG~~~~A~eA~~~GLv~~vv  201 (278)
T 3h81_A          124 GYALGGGCELAMMCDVLIAADT--AKFGQPEIKLGVLPGMGGSQRLTRAIGKAKAMDLILTGRTMDAAEAERSGLVSRVV  201 (278)
T ss_dssp             BEEETHHHHHHHHSSEEEEETT--CEEECGGGGGTCCCCSSHHHHHHHHHCHHHHHHHHHHCCCEEHHHHHHHTSCSEEE
T ss_pred             CeeehHHHHHHHHCCEEEEcCC--CEEECchhhcCcCCCccHHHHHHHHhCHHHHHHHHHhCCCcCHHHHHHCCCccEEe
Confidence            6799999999999999999998  99999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccccccCCCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHhhCCCCCcH
Q psy9056          81 EPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAP  160 (359)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (359)
                      |+             +++.+.+.+++++|+..++.                                           +.
T Consensus       202 ~~-------------~~l~~~a~~~a~~la~~~p~-------------------------------------------a~  225 (278)
T 3h81_A          202 PA-------------DDLLTEARATATTISQMSAS-------------------------------------------AA  225 (278)
T ss_dssp             CG-------------GGHHHHHHHHHHHHHTSCHH-------------------------------------------HH
T ss_pred             Ch-------------hHHHHHHHHHHHHHHhCCHH-------------------------------------------HH
Confidence            98             88999999999999998772                                           33


Q ss_pred             HHHHHHHHHhhccChhhHHHHHHHHhhhhhcChhhHHHHHhHhhhhhhhhc
Q psy9056         161 LKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQTECKKN  211 (359)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~s~~~~~~~~af~~k~~~~~~  211 (359)
                      ..+|++++.+...+++++++.|.+.+..++.|+|++||+++|++||+|+|.
T Consensus       226 ~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~eg~~AF~ekR~P~f~  276 (278)
T 3h81_A          226 RMAKEAVNRAFESSLSEGLLYERRLFHSAFATEDQSEGMAAFIEKRAPQFT  276 (278)
T ss_dssp             HHHHHHHHHTTTSCHHHHHHHHHHHHHHHTTSHHHHHHHHHHHTTSCCCCC
T ss_pred             HHHHHHHHhhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCCCCC
Confidence            467788888888899999999999999999999999999999999998874

>3moy_A Probable enoyl-COA hydratase; ssgcid, seattle structural genomics center for infectious DI enoyl COA, actinobacteria, lyase; 1.50A {Mycobacterium smegmatis}

Probab=99.97  E-value=2.6e-31  Score=246.08  Aligned_cols=153  Identities=28%  Similarity=0.431  Sum_probs=144.1

Q ss_pred             CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceec
Q psy9056           1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLV   80 (359)
Q Consensus         1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~   80 (359)
                      |+|+|||++|+++||+||++++  ++|++||+++|++|++|++++|++++|..++++|++||++++++||+++||||+++
T Consensus       109 G~a~GgG~~lalacD~~ia~~~--a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~A~~l~ltg~~~~a~eA~~~GLv~~vv  186 (263)
T 3moy_A          109 GYALGGGCELAMLCDLVIAADT--ARFGQPEITLGILPGLGGTQRLTRAVGKAKAMDLCLTGRSLTAEEAERVGLVSRIV  186 (263)
T ss_dssp             BEEETHHHHHHHHSSEEEEETT--CEEECGGGGGTCCCSSSTTTHHHHHHCHHHHHHHHHHCCEEEHHHHHHTTSCSEEE
T ss_pred             CEeehHHHHHHHHCCEEEecCC--CEEeCcccccCCCCchhHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHCCCccEec
Confidence            6799999999999999999998  99999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccccccCCCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHhhCCCCCcH
Q psy9056          81 EPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAP  160 (359)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (359)
                      |+             +++.+.+.+++++|+..++.                                           +.
T Consensus       187 ~~-------------~~l~~~a~~~a~~la~~~~~-------------------------------------------a~  210 (263)
T 3moy_A          187 PA-------------ADLLDEALAVAQRIARMSRP-------------------------------------------AG  210 (263)
T ss_dssp             CG-------------GGHHHHHHHHHHHHHHSCHH-------------------------------------------HH
T ss_pred             Cc-------------hHHHHHHHHHHHHHHhCCHH-------------------------------------------HH
Confidence            98             88999999999999998762                                           33


Q ss_pred             HHHHHHHHHhhccChhhHHHHHHHHhhhhhcChhhHHHHHhHhhhhhhhhc
Q psy9056         161 LKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQTECKKN  211 (359)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~s~~~~~~~~af~~k~~~~~~  211 (359)
                      ..+|++++.....+++++++.|.+.+..++.|+|++||+++|++||+|+|.
T Consensus       211 ~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~eg~~AF~ekR~p~f~  261 (263)
T 3moy_A          211 RAVKDAINEAFERPLSAGMRYERDAFYAMFDTHDQTEGMTAFLEKRTPEFT  261 (263)
T ss_dssp             HHHHHHHHHTTTSCHHHHHHHHHHHHHHHTTSHHHHHHHHHHHTTSCCCCC
T ss_pred             HHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhCCCCCCC
Confidence            467788888888999999999999999999999999999999999998874

>3pea_A Enoyl-COA hydratase/isomerase family protein; structural genomics, center for structural genomics of infec diseases, csgid; HET: FLC PG4; 1.82A {Bacillus anthracis}

Probab=99.97  E-value=2e-31  Score=246.66  Aligned_cols=153  Identities=25%  Similarity=0.386  Sum_probs=143.2

Q ss_pred             CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceec
Q psy9056           1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLV   80 (359)
Q Consensus         1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~   80 (359)
                      |+|+|||++|+++|||||++++  ++|++||+++|++|++|++++|++++|..++++|++||++++++||+++||||+++
T Consensus       107 G~a~GgG~~lalacD~ria~~~--a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~a~~l~ltg~~~~a~eA~~~GLv~~vv  184 (261)
T 3pea_A          107 GAALGGGLEFAMSCHMRFATES--AKLGLPELTLGLIPGFAGTQRLPRYVGKAKACEMMLTSTPITGAEALKWGLVNGVF  184 (261)
T ss_dssp             SEEETHHHHHHHHSSEEEEETT--CEEECCGGGGTCCCCSSHHHHHHHHHCHHHHHHHHHHCCCEEHHHHHHHTSSSEEE
T ss_pred             CeeehHHHHHHHhCCEEEEcCC--CEEECcccccCcCCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHCCCccEec
Confidence            6799999999999999999998  99999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccccccCCCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHhhCCCCCcH
Q psy9056          81 EPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAP  160 (359)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (359)
                      |+             +++.+.+.+++++++..++.                                           +.
T Consensus       185 ~~-------------~~l~~~a~~~a~~la~~~~~-------------------------------------------a~  208 (261)
T 3pea_A          185 AE-------------ETFLDDTLKVAKQIAGKSPA-------------------------------------------TA  208 (261)
T ss_dssp             CG-------------GGHHHHHHHHHHHHHTSCHH-------------------------------------------HH
T ss_pred             CH-------------HHHHHHHHHHHHHHHcCCHH-------------------------------------------HH
Confidence            98             88999999999999998762                                           33


Q ss_pred             HHHHHHHHHhhccChhhHHHHHHHHhhhhhcChhhHHHHHhHhhhhhhhhc
Q psy9056         161 LKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQTECKKN  211 (359)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~s~~~~~~~~af~~k~~~~~~  211 (359)
                      ..+|++++.+...+++++++.|.+.+..++.|+|++||+++|++||+|+|.
T Consensus       209 ~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~eg~~af~ekr~P~f~  259 (261)
T 3pea_A          209 RAVLELLQTTKSSHYYEGVQREAQIFGEVFTSEDGREGVAAFLEKRKPSFS  259 (261)
T ss_dssp             HHHHHHHGGGCCHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHTTSCCCCC
T ss_pred             HHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCCCCC
Confidence            357778888877889999999999999999999999999999999998874

>3rsi_A Putative enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.00A {Mycobacterium abscessus}

Probab=99.97  E-value=7e-31  Score=243.55  Aligned_cols=153  Identities=20%  Similarity=0.236  Sum_probs=143.5

Q ss_pred             CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceec
Q psy9056           1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLV   80 (359)
Q Consensus         1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~   80 (359)
                      |.|+|||++|+++||+|||+++  ++|++||+++|++|++|++++|++++|..++++|++||++++|+||+++||||+++
T Consensus       111 G~a~GgG~~lalacD~~ia~~~--a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~ltg~~~~a~eA~~~GLv~~vv  188 (265)
T 3rsi_A          111 GACLGGGCEMLQQTDIRVSDEH--ATFGLPEVQRGLVPGAGSMVRLKRQIPYTKAMEMILTGEPLTAFEAYHFGLVGHVV  188 (265)
T ss_dssp             SCEETHHHHHHTTCSEEEEETT--CEEECGGGGGTCCCTTTHHHHHHHHSCHHHHHHHHHHCCCEEHHHHHHTTSCSEEE
T ss_pred             CeeeHHHHHHHHHCCEEEecCC--CEEECchhccCCCCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHCCCccEec
Confidence            6899999999999999999998  99999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccccccCCCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHhhCCCCCcH
Q psy9056          81 EPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAP  160 (359)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (359)
                      |+             +++.+.+.+++++|+..++.                                           +.
T Consensus       189 ~~-------------~~l~~~a~~~a~~la~~~~~-------------------------------------------a~  212 (265)
T 3rsi_A          189 PA-------------GTALDKARSLADRIVRNGPL-------------------------------------------AV  212 (265)
T ss_dssp             ST-------------TCHHHHHHHHHHHHHTSCHH-------------------------------------------HH
T ss_pred             Ch-------------hHHHHHHHHHHHHHHhCCHH-------------------------------------------HH
Confidence            98             78999999999999998772                                           23


Q ss_pred             HHHHHHHHHhhccChhhHHHHHHHHhhhhhcChhhHHHHHhHhhhhhhhhc
Q psy9056         161 LKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQTECKKN  211 (359)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~s~~~~~~~~af~~k~~~~~~  211 (359)
                      ..+|++++.....+++++++.|.+.+..++.|+|++||+++|++||+|.|.
T Consensus       213 ~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~d~~eg~~af~ekr~p~f~  263 (265)
T 3rsi_A          213 RNAKEAIVRSGWLAEEDARAIEARLTRPVITSADAREGLAAFKEKREARFT  263 (265)
T ss_dssp             HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHTSCCCCC
T ss_pred             HHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHcCCCCCCC
Confidence            357788888888899999999999999999999999999999999998874

>3r9t_A ECHA1_1; ssgcid, seattle structural genomics center for infectious DI enoyl-COA hydratase, lyase; 1.75A {Mycobacterium avium subsp} SCOP: c.14.1.0 PDB: 3r9s_A 3r0o_A

Probab=99.97  E-value=2.8e-31  Score=246.41  Aligned_cols=153  Identities=23%  Similarity=0.297  Sum_probs=141.5

Q ss_pred             CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceec
Q psy9056           1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLV   80 (359)
Q Consensus         1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~   80 (359)
                      |+|+|||++|+++||+||++++  ++|++||+++|++|++|++++|++++|..++++|++||++++++||+++||||+++
T Consensus       110 G~a~GgG~~lalacD~ria~~~--a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~A~~l~ltg~~i~A~eA~~~GLv~~vv  187 (267)
T 3r9t_A          110 GTALGGGTELALASDLVVADER--AQFGLPEVKRGLIAAAGGVFRIAEQLPRKVAMRLLLTGEPLSAAAARDWGLINEVV  187 (267)
T ss_dssp             SEECTHHHHHHHHSSEEEEETT--CEECCGGGGTTCCCTTTHHHHHHHHSCHHHHHHHHHHCCCEEHHHHHHHTSSSEEE
T ss_pred             CEEEhHHHHHHHhCCEEEEcCC--CEEECcccccCCCCCccHHHHHHHHcCHHHHHHHHHcCCCCCHHHHHHCCCccEEc
Confidence            6899999999999999999998  99999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccccccCCCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHhhCCCCCcH
Q psy9056          81 EPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAP  160 (359)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (359)
                      |+             +++.+.+.+++++|+..++.                                           +.
T Consensus       188 ~~-------------~~l~~~a~~~a~~la~~~p~-------------------------------------------a~  211 (267)
T 3r9t_A          188 EA-------------GSVLDAALALASAITVNAPL-------------------------------------------SV  211 (267)
T ss_dssp             CT-------------TCHHHHHHHHHHHHHTSCHH-------------------------------------------HH
T ss_pred             Ch-------------hHHHHHHHHHHHHHHhCChH-------------------------------------------HH
Confidence            98             78999999999999998772                                           22


Q ss_pred             HHHHHH---HHHhhccChhhHHHHHHHHhhhhhcChhhHHHHHhHhhhhhhhhc
Q psy9056         161 LKILDV---VRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQTECKKN  211 (359)
Q Consensus       161 ~~~~~~---~~~~~~~~~~~~~~~e~~~~~~~~~s~~~~~~~~af~~k~~~~~~  211 (359)
                      ..+|++   ++.....+++++++.|.+.+..++.|+|++||+++|++||+|+|.
T Consensus       212 ~~~K~~~~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~eg~~AF~ekR~P~f~  265 (267)
T 3r9t_A          212 QASKRIAYGVDDGVVVGDEPGWDRTMREMRALLKSEDAKEGPRAFAEKREPVWQ  265 (267)
T ss_dssp             HHHHHHHTTEETTEEGGGHHHHHHHHHHHHHHTTSSHHHHHHHHHHTTSCCCCC
T ss_pred             HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCCCCC
Confidence            345666   666677789999999999999999999999999999999998874

>3qxi_A Enoyl-COA hydratase ECHA1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.20A {Mycobacterium marinum}

Probab=99.97  E-value=6.7e-31  Score=243.62  Aligned_cols=153  Identities=22%  Similarity=0.327  Sum_probs=143.4

Q ss_pred             CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceec
Q psy9056           1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLV   80 (359)
Q Consensus         1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~   80 (359)
                      |.|+|||++|+++||||||+++  ++|++||+++|++|++|++++|++++|..++++|++||++++++||+++||||+++
T Consensus       111 G~a~GgG~~lalacD~ria~~~--a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~ltg~~~~a~eA~~~GLv~~vv  188 (265)
T 3qxi_A          111 GYALAGGTELALATDLIVAARD--SAFGIPEVKRGLVAGGGGLLRLPERIPYAIAMELALTGDNLSAERAHALGMVNVLA  188 (265)
T ss_dssp             SEEETHHHHHHHHSSEEEEETT--CEEECGGGGGTCCCCSSHHHHHHHHSCHHHHHHHHHHCCCEEHHHHHHTTSCSEEE
T ss_pred             CceeHHHHHHHHhCCEEEEcCC--CEEECcccccCcCCcccHHHHHHHHhCHHHHHHHHHcCCCcCHHHHHHCCCccEee
Confidence            6799999999999999999998  99999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccccccCCCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHhhCCCCCcH
Q psy9056          81 EPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAP  160 (359)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (359)
                      |+             +++.+.+.+++++|+..++.                                           +.
T Consensus       189 ~~-------------~~l~~~a~~~a~~la~~~p~-------------------------------------------a~  212 (265)
T 3qxi_A          189 EP-------------GAALDAAIALAEKITANGPL-------------------------------------------AV  212 (265)
T ss_dssp             CT-------------TCHHHHHHHHHHHHHTSCHH-------------------------------------------HH
T ss_pred             Ch-------------hHHHHHHHHHHHHHHcCCHH-------------------------------------------HH
Confidence            98             88999999999999998772                                           23


Q ss_pred             HHHHHHHHHhhccChhhHHHHHHHHhhhhhcChhhHHHHHhHhhhhhhhhc
Q psy9056         161 LKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQTECKKN  211 (359)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~s~~~~~~~~af~~k~~~~~~  211 (359)
                      ..+|++++.....+++++++.|.+.+..++.|+|++||+++|++||+|+|.
T Consensus       213 ~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~eg~~af~ekr~p~f~  263 (265)
T 3qxi_A          213 AATKRIITESRGWSLDTRFAQQMKILFPIFTSNDAKEGAIAFAEKRPPRWT  263 (265)
T ss_dssp             HHHHHHHHHHTTCCTTTHHHHHHHHHHHHHHCHHHHHHHHHHHTTSCCCCC
T ss_pred             HHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHcCCCCCCC
Confidence            357778888888899999999999999999999999999999999998874

>3swx_A Probable enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.10A {Mycobacterium abscessus}

Probab=99.97  E-value=6e-31  Score=244.00  Aligned_cols=153  Identities=22%  Similarity=0.205  Sum_probs=143.0

Q ss_pred             CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceec
Q psy9056           1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLV   80 (359)
Q Consensus         1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~   80 (359)
                      |.|+|||++|+++||+||++++  ++|++||+++|++|++|++++|++++|..++++|++||++++++||+++||||+++
T Consensus       111 G~a~GgG~~lalacD~~ia~~~--a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~A~~l~ltg~~~~a~eA~~~GLv~~vv  188 (265)
T 3swx_A          111 GKVLTLGIELALAADIVIADET--ATFAQLEVNRGIYPFGGATIRFPRTAGWGNAMRWMLTADTFDAVEAHRIGIVQEIV  188 (265)
T ss_dssp             SEEETHHHHHHHHSSEEEEETT--CEEECGGGGGTSCCCSSHHHHHHHHHCHHHHHHHHTTCCCEEHHHHHHTTSCSEEE
T ss_pred             CeeehHHHHHHHHCCEEEEcCC--CEEECcccccccCCCccHHHHHHHHhhHHHHHHHHHcCCcCCHHHHHHcCCCCEec
Confidence            6799999999999999999998  99999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccccccCCCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHhhCCCCCcH
Q psy9056          81 EPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAP  160 (359)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (359)
                      |+             +++.+.+.+++++++..++.                                           +.
T Consensus       189 ~~-------------~~l~~~a~~~a~~la~~~p~-------------------------------------------a~  212 (265)
T 3swx_A          189 PV-------------GEHVDTAIAIAQTIARQAPL-------------------------------------------GV  212 (265)
T ss_dssp             ST-------------TCHHHHHHHHHHHHHHSCHH-------------------------------------------HH
T ss_pred             Ch-------------hHHHHHHHHHHHHHHcCCHH-------------------------------------------HH
Confidence            98             78999999999999998762                                           23


Q ss_pred             HHHHHHHHHhhccChhhHHHHHHHHhhhhhcChhhHHHHHhHhhhhhhhhc
Q psy9056         161 LKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQTECKKN  211 (359)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~s~~~~~~~~af~~k~~~~~~  211 (359)
                      ..+|++++.....+++++++.|.+.+..++.|+|++||+++|++||+|+|.
T Consensus       213 ~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~s~d~~eg~~af~ekr~p~f~  263 (265)
T 3swx_A          213 QATLRNARLAVREGDAAAEEQLVPTVRELFTSEDATLGVQAFLSRTTAEFV  263 (265)
T ss_dssp             HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTTCCCCCC
T ss_pred             HHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHhcCCCCCCC
Confidence            357778888888899999999999999999999999999999999998874

>3p5m_A Enoyl-COA hydratase/isomerase; seattle structural genomics center for infectious disease, S coenzyme A, tuberculosis; 2.05A {Mycobacterium avium}

Probab=99.97  E-value=6.6e-31  Score=242.38  Aligned_cols=153  Identities=20%  Similarity=0.193  Sum_probs=143.3

Q ss_pred             CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceec
Q psy9056           1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLV   80 (359)
Q Consensus         1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~   80 (359)
                      |+|+|||++|+++|||||++++  ++|++||+++|++|++|++++|++++|..++++|++||++++++||+++||||+++
T Consensus       101 G~a~GgG~~lalacD~~ia~~~--a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~A~~l~ltg~~~~a~eA~~~GLv~~vv  178 (255)
T 3p5m_A          101 GAAVGFGCSLALACDLVVAAPA--SYFQLAFTRVGLMPDGGASALLPLLIGRARTSRMAMTAEKISAATAFEWGMISHIT  178 (255)
T ss_dssp             SEEETHHHHHHHHSSEEEECTT--CEEECGGGGGTCCCCTTHHHHTHHHHCHHHHHHHHHHCCCEEHHHHHHTTSCSEEC
T ss_pred             CeehhhHHHHHHHCCEEEEcCC--cEEeCcccccCcCCCccHHHHHHHHhCHHHHHHHHHcCCCcCHHHHHHCCCCCEee
Confidence            6799999999999999999998  99999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccccccCCCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHhhCCCCCcH
Q psy9056          81 EPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAP  160 (359)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (359)
                      |+             +++.+.+.+++++++..++.                                           +.
T Consensus       179 ~~-------------~~l~~~a~~~a~~la~~~~~-------------------------------------------a~  202 (255)
T 3p5m_A          179 SA-------------DEYESVLTDVLRSVSGGPTL-------------------------------------------AF  202 (255)
T ss_dssp             CT-------------TCHHHHHHHHHHHHHTSCHH-------------------------------------------HH
T ss_pred             CH-------------HHHHHHHHHHHHHHHhCCHH-------------------------------------------HH
Confidence            98             78999999999999998762                                           23


Q ss_pred             HHHHHHHHHhhccChhhHHHHHHHHhhhhhcChhhHHHHHhHhhhhhhhhc
Q psy9056         161 LKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQTECKKN  211 (359)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~s~~~~~~~~af~~k~~~~~~  211 (359)
                      ..+|++++.....+++++++.|.+.+..++.|+|++|++++|++||+|+|.
T Consensus       203 ~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~eg~~af~ekr~p~f~  253 (255)
T 3p5m_A          203 GWTKRALAAATLAELEPVQAIEAEGQLALVETADFREGARAFRERRTPNFR  253 (255)
T ss_dssp             HHHHHHHHHHHCTTHHHHHHHHHHHHHHHTTSHHHHHHHHHHHTTSCCCCC
T ss_pred             HHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCCCCC
Confidence            357778888888899999999999999999999999999999999998874

>3g64_A Putative enoyl-COA hydratase; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; 2.05A {Streptomyces coelicolor A3}

Probab=99.97  E-value=8e-31  Score=244.94  Aligned_cols=154  Identities=21%  Similarity=0.270  Sum_probs=143.8

Q ss_pred             CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCC-CCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCccee
Q psy9056           1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLL-PGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQL   79 (359)
Q Consensus         1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~-p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~   79 (359)
                      |+|+|||++|+++||+|||+++  ++|++||+++|++ |++|++++|++++|..++++|++||++++++||+++||||++
T Consensus       122 G~a~GgG~~lalacD~~ia~~~--a~f~~pe~~~Gl~~p~~g~~~~l~r~vG~~~A~~l~ltg~~~~a~eA~~~GLv~~v  199 (279)
T 3g64_A          122 GVAAGAGAVLALAADFRVADPS--TRFAFLFTRVGLSGGDMGAAYLLPRVVGLGHATRLLMLGDTVRAPEAERIGLISEL  199 (279)
T ss_dssp             SEEETHHHHHHHHSSEEEECTT--CEEECCGGGGTCCSCCTTHHHHHHHHHCHHHHHHHHHHCCCEEHHHHHHHTCCSEE
T ss_pred             CeeccccHHHHHhCCEEEEeCC--CEEeCchhhcCCCCCchhHHHHHHHHhCHHHHHHHHHcCCCcCHHHHHHCCCCCEe
Confidence            6799999999999999999998  9999999999999 999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccccccCCCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHhhCCCCCc
Q psy9056          80 VEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPA  159 (359)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (359)
                      +|+             +++.+.+.+++++|+..|+.                                           +
T Consensus       200 v~~-------------~~l~~~a~~~a~~la~~~~~-------------------------------------------a  223 (279)
T 3g64_A          200 TEE-------------GRADEAARTLARRLADGPAL-------------------------------------------A  223 (279)
T ss_dssp             CCT-------------TCHHHHHHHHHHHHHTSCHH-------------------------------------------H
T ss_pred             cCc-------------hHHHHHHHHHHHHHHhCCHH-------------------------------------------H
Confidence            998             78999999999999998762                                           2


Q ss_pred             HHHHHHHHHHhhccChhhHHHHHHHHhhhhhcChhhHHHHHhHhhhhhhhhcC
Q psy9056         160 PLKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQTECKKNR  212 (359)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~s~~~~~~~~af~~k~~~~~~~  212 (359)
                      ...+|+.++.....+++++++.|.+.+..++.|+|++||+++|++||+|+|..
T Consensus       224 ~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~d~~eg~~af~ekr~p~f~g  276 (279)
T 3g64_A          224 HAQTKALLTAELDMPLAAAVELDASTQALLMTGEDYAEFHAAFTEKRPPKWQG  276 (279)
T ss_dssp             HHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTSHHHHHHHHHHHTTSCCCCCC
T ss_pred             HHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHhcCCCCCCCC
Confidence            33567788888888999999999999999999999999999999999988853

>4hdt_A 3-hydroxyisobutyryl-COA hydrolase; ssgcid, carnitinyl-COA dehydratase, enoyl-COA hydratase/ISOM mycobacterium thermoresistibIle; 1.60A {Mycobacterium thermoresistibile}

Probab=99.97  E-value=7.4e-31  Score=252.42  Aligned_cols=197  Identities=19%  Similarity=0.140  Sum_probs=152.0

Q ss_pred             CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceec
Q psy9056           1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLV   80 (359)
Q Consensus         1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~   80 (359)
                      |+|+|||++|+++|||||++++  ++|++||+++|++|++|++++|++++| .++++|++||++++|+||+++||||++|
T Consensus       114 G~a~GgG~~lal~cD~ria~~~--a~f~~pe~~iGl~p~~g~~~~l~rl~g-~~a~~l~ltG~~i~A~eA~~~GLv~~vv  190 (353)
T 4hdt_A          114 GIVMGGGVGVGAHGNVRVVTDT--TKMAMPEVGIGFIPDVGGTYLLSRAPG-KLGLHAALTGAPFSGADAIVMGFADHYV  190 (353)
T ss_dssp             BEEETHHHHHHTTSSEEEECTT--CEEECCGGGGTCCCCTTHHHHHHTSST-THHHHHHHHCCCBCHHHHHHHTSCSEEC
T ss_pred             CceeecCccccCCcCeeccchh--ccccCcccccccCCCccceehhhhhhh-HHHHHHHhcCCCCCHHHHHHcCCCcEEe
Confidence            6899999999999999999998  999999999999999999999999999 6899999999999999999999999999


Q ss_pred             CCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCcccccc-CCCCCC-----chhhh------hhhhhhhhhhHHHHHHHHH
Q psy9056          81 EPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINR-TKPMIP-----DKVLD------VALKFEFVRNQIFGKAKEK  148 (359)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~-~k~~~~-----~~~~~------~~~~~~~~~~~~~~~~~~~  148 (359)
                      |+             ++|++.+.+++.+..+....... ..+..+     ..++.      ..............+..+.
T Consensus       191 ~~-------------~~l~~~a~~la~~~~~~~l~~~~~~~~~~~l~~~~~~i~~~f~~~~~~~i~~~L~~~~~~~a~~~  257 (353)
T 4hdt_A          191 PH-------------DKIDEFTRAVIADGVDAALAAHAQEPPASPLAEQRSWIDECYTGDTVADIIAALRAHDAPAAGEA  257 (353)
T ss_dssp             CG-------------GGHHHHHHHHHHHCHHHHHHHHCBCCCCCHHHHTHHHHHHHTTCSSHHHHHHHHHHHCSHHHHHH
T ss_pred             CH-------------HHHHHHHHHHHHhchhHHHHHhcccCCccchHHHHHHHHHHhCCCCHHHHHHHHHhcccHHHHHH
Confidence            98             88888888887765433221100 000000     00111      0111122222333444555


Q ss_pred             HHHhhCCCCCcHHHHHHHHHHhhcc-ChhhHHHHHHHHhhhhhcChhhHHHHHhHh--hhhhhhhcCC
Q psy9056         149 VMKMSGGLYPAPLKILDVVRTGIEK-GPSAGYEAEAEGFSQLAMTPQSKGLMGLFR--AQTECKKNRL  213 (359)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~~~~~~~~~s~~~~~~~~af~--~k~~~~~~~~  213 (359)
                      ..+....++.+...+++.++++... +++++++.|.+.+..++.|+|++||+++|+  +||+|+|++.
T Consensus       258 a~~la~~sP~a~~~~k~~l~~~~~~~sl~e~l~~E~~~~~~~~~s~D~~EGvrAfl~dekR~P~w~p~  325 (353)
T 4hdt_A          258 ADLIATRSPIALSVTLESVRRAAKLQSLEDTLRQEYRVSCASLKSHDLVEGIRAQLVDKDRNPKWRPA  325 (353)
T ss_dssp             HHHHTTSCHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHC----CCCCSSC
T ss_pred             HHHHHhcCcHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhCCchHHHHHhhhhhCcCCCCCCCCC
Confidence            6666777888888999999998775 899999999999999999999999999998  9999888643

>4f47_A Enoyl-COA hydratase ECHA19; ssgcid, seattle structural genomics center for infectious DI niaid; 1.75A {Mycobacterium marinum}

Probab=99.97  E-value=1e-30  Score=244.17  Aligned_cols=153  Identities=19%  Similarity=0.210  Sum_probs=143.6

Q ss_pred             CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceec
Q psy9056           1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLV   80 (359)
Q Consensus         1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~   80 (359)
                      |+|+|||++|+++||||||+++  ++|++||+++|++|++|++++|++++|..++++|++||++++++||+++||||+++
T Consensus       124 G~a~GgG~~lalacD~ria~~~--a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~a~~l~ltg~~~~a~eA~~~GLv~~vv  201 (278)
T 4f47_A          124 GPAIAGGTEILQGTDIRVAAES--AKFGISEAKWSLYPMGGSAVRLVRQIPYTVACDLLLTGRHITAAEAKEMGLVGHVV  201 (278)
T ss_dssp             SEEETHHHHHHTTCSEEEEETT--CEEECCGGGGTCCCTTSHHHHHHHHSCHHHHHHHHHHCCCEEHHHHHHTTSCSEEE
T ss_pred             CEEehHHHHHHHhCCEEEEcCC--CEEECcccccCCCCCccHHHHHHHHhCHHHHHHHHHcCCcCCHHHHHHCCCceEee
Confidence            6799999999999999999998  99999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccccccCCCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHhhCCCCCcH
Q psy9056          81 EPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAP  160 (359)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (359)
                      |+             +++.+.+.+++++++..++.                                           +.
T Consensus       202 ~~-------------~~l~~~a~~~a~~la~~~~~-------------------------------------------a~  225 (278)
T 4f47_A          202 PD-------------GQALTKALEIAEIIAANGPL-------------------------------------------AV  225 (278)
T ss_dssp             CT-------------TCHHHHHHHHHHHHHHSCHH-------------------------------------------HH
T ss_pred             Ch-------------hHHHHHHHHHHHHHHhCCHH-------------------------------------------HH
Confidence            98             78999999999999998762                                           23


Q ss_pred             HHHHHHHHHhhccChhhHHHHHHHHhhhhhcChhhHHHHHhHhhhhhhhhc
Q psy9056         161 LKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQTECKKN  211 (359)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~s~~~~~~~~af~~k~~~~~~  211 (359)
                      ..+|++++.....+++++++.|.+.+..++.|+|++||+++|++||+|+|.
T Consensus       226 ~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~eg~~Af~ekr~p~f~  276 (278)
T 4f47_A          226 QAILRTIRETEGMHENEAFKIDTRIGIEVFLSDDAKEGPQAFAQKRKPNFQ  276 (278)
T ss_dssp             HHHHHHHHHTTTSCHHHHHHHHHHHHGGGGGSSHHHHHHHHHHTTSCCCCC
T ss_pred             HHHHHHHHHhccCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHhcCCCCCCC
Confidence            357788888888899999999999999999999999999999999998874

>3qxz_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.35A {Mycobacterium abscessus} SCOP: c.14.1.0

Probab=99.97  E-value=5.4e-31  Score=244.30  Aligned_cols=153  Identities=19%  Similarity=0.210  Sum_probs=142.9

Q ss_pred             CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceec
Q psy9056           1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLV   80 (359)
Q Consensus         1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~   80 (359)
                      |+|+|||++|+++||+|||+++  ++|++||+++|++|++|++++|++++|..++++|++||++++|+||+++||||+++
T Consensus       107 G~a~GgG~~lalacD~~ia~~~--a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~A~~l~ltg~~~~A~eA~~~GLv~~vv  184 (265)
T 3qxz_A          107 GHAIGIGMTLALHADIRILAEE--GRYAIPQVRFGVAPDALAHWTLPRLVGTAVAAELLLTGASFSAQRAVETGLANRCL  184 (265)
T ss_dssp             SEEETHHHHHHTTSSEEEEETT--CCEECCGGGGTSCCCTTHHHHTHHHHHHHHHHHHHHHCCCBCHHHHHHHTSCSEEE
T ss_pred             CEEehHhHHHHHHCCEEEEcCC--CEEECcccccCcCCCccHHHHHHHHhCHHHHHHHHHcCCCcCHHHHHHCCCccEee
Confidence            6799999999999999999998  99999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCcchhhHHHHHHHHHHHHHHHhcC-ccccccCCCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHhhCCCCCc
Q psy9056          81 EPLGPGLNHPEERTMEYLEEVAVNTASQLASG-KLKINRTKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPA  159 (359)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~-~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (359)
                      |+             +++.+.+.+++++++.. |+.                                           +
T Consensus       185 ~~-------------~~l~~~a~~~a~~la~~~~p~-------------------------------------------a  208 (265)
T 3qxz_A          185 PA-------------GKVLGAALRMAHDIATNVAPE-------------------------------------------S  208 (265)
T ss_dssp             CH-------------HHHHHHHHHHHHHHHHHSCHH-------------------------------------------H
T ss_pred             CH-------------HHHHHHHHHHHHHHHccCCHH-------------------------------------------H
Confidence            98             89999999999999987 762                                           2


Q ss_pred             HHHHHHHHHHhhccChhhH--HHHHHHHhhhhhcChhhHHHHHhHhhhhhhhhc
Q psy9056         160 PLKILDVVRTGIEKGPSAG--YEAEAEGFSQLAMTPQSKGLMGLFRAQTECKKN  211 (359)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~--~~~e~~~~~~~~~s~~~~~~~~af~~k~~~~~~  211 (359)
                      ...+|+.++.....+++++  ++.|.+.+..++.|+|++||+++|++||+|+|.
T Consensus       209 ~~~~K~~l~~~~~~~l~~~~~l~~e~~~~~~~~~s~d~~egi~Af~ekr~P~f~  262 (265)
T 3qxz_A          209 AALTKRLLWDAQMTGMSAAEVAARETADHLRLMGSQDAAEGPRAFIDGRPPRWA  262 (265)
T ss_dssp             HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTSTHHHHHHHHHHHTSCCCCC
T ss_pred             HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHcCCCCCCC
Confidence            3356777888888889999  999999999999999999999999999999875

>3i47_A Enoyl COA hydratase/isomerase (crotonase); structural genomics; 1.58A {Legionella pneumophila subsp} SCOP: c.14.1.0

Probab=99.97  E-value=1e-30  Score=242.76  Aligned_cols=155  Identities=17%  Similarity=0.122  Sum_probs=141.0

Q ss_pred             CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceec
Q psy9056           1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLV   80 (359)
Q Consensus         1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~   80 (359)
                      |.|+|||++|+++||+|||+++  ++|++||+++|++|++|++ +|++++|..++++|++||++++|+||+++||||+++
T Consensus       108 G~a~GgG~~lalacD~ria~~~--a~f~~pe~~~Gl~p~~g~~-~l~~~vG~~~A~~llltg~~i~A~eA~~~GLV~~vv  184 (268)
T 3i47_A          108 GAAFGGGAGLAAACDIAIASTS--ARFCFSEVKLGLIPAVISP-YVVRAIGERAAKMLFMSAEVFDATRAYSLNLVQHCV  184 (268)
T ss_dssp             SEEETHHHHHHHHSSEEEEETT--CEEECCGGGGTCCCTTTHH-HHHHHHCHHHHHHHHHHCCEEEHHHHHHTTSCSEEE
T ss_pred             CEEEhHhHHHHHhCCEEEEcCC--CEEECcccccCCCcccHHH-HHHHHhCHHHHHHHHHcCCccCHHHHHHcCCCcEee
Confidence            6799999999999999999998  9999999999999999988 789999999999999999999999999999999999


Q ss_pred             CCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccccccCCCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHhhCCCCCcH
Q psy9056          81 EPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAP  160 (359)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (359)
                      |+             +++.+.+.+++++|+..|+.                                           +.
T Consensus       185 ~~-------------~~l~~~a~~~a~~la~~~~~-------------------------------------------a~  208 (268)
T 3i47_A          185 PD-------------DTLLEFTLKYASQISNNAPE-------------------------------------------AV  208 (268)
T ss_dssp             CG-------------GGHHHHHHHHHHHHHTSCHH-------------------------------------------HH
T ss_pred             Ch-------------hHHHHHHHHHHHHHHcCCHH-------------------------------------------HH
Confidence            98             88999999999999998772                                           23


Q ss_pred             HHHHHHHHHhhccChhh-HHHHHHHHhhhhhcChhhHHHHHhHhhhhhhhhcCCC
Q psy9056         161 LKILDVVRTGIEKGPSA-GYEAEAEGFSQLAMTPQSKGLMGLFRAQTECKKNRLG  214 (359)
Q Consensus       161 ~~~~~~~~~~~~~~~~~-~~~~e~~~~~~~~~s~~~~~~~~af~~k~~~~~~~~~  214 (359)
                      ..+|++++.....++++ .++.|.+.+..++.|+|++||+++|++||+|.|..++
T Consensus       209 ~~~K~~l~~~~~~~l~~~~~~~e~~~~~~~~~s~d~~eg~~AF~ekR~p~f~~~~  263 (268)
T 3i47_A          209 KNSKQLAQYVANKKIDEELVRYTASLIAHKRVSDEGQEGLKAFLNKEIPNWNEGH  263 (268)
T ss_dssp             HHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHSHHHHHHHHHHHHTCCCTTC---
T ss_pred             HHHHHHHHhhhcCChhHHHHHHHHHHHHHHhcCHHHHHHHHHHHcCCCCCCCCCC
Confidence            35777888887888888 7899999999999999999999999999999996544

>2pbp_A Enoyl-COA hydratase subunit I; B-oxidation, structural genomics, NPPSFA, nationa on protein structural and functional analyses; 1.80A {Geobacillus kaustophilus} PDB: 2qq3_A

Probab=99.97  E-value=1.7e-30  Score=240.13  Aligned_cols=153  Identities=31%  Similarity=0.427  Sum_probs=142.5

Q ss_pred             CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceec
Q psy9056           1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLV   80 (359)
Q Consensus         1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~   80 (359)
                      |+|+|||++|+++||||||+++  ++|++||+++|++|++|++++|++++|..++++|++||++++++||+++||||+++
T Consensus       104 G~a~GgG~~lalacD~~ia~~~--a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~ltg~~~~a~eA~~~GLv~~vv  181 (258)
T 2pbp_A          104 GLALGGGFELALSCDLIVASSA--AEFGFPEVNLGVMPGAGGTQRLTKLIGPKRALEWLWTGARMSAKEAEQLGIVNRVV  181 (258)
T ss_dssp             SEEETHHHHHHHTSSEEEEETT--CEEECGGGGGTCCCCSSHHHHHHHHHCHHHHHHHHHHCCCEEHHHHHHTTSCSEEE
T ss_pred             CEEEhHHHHHHHhCCEEEEcCC--CEEECcccccCCCCcccHHHHHHHHhCHHHHHHHHHcCCccCHHHHHHcCCcceee
Confidence            6799999999999999999998  99999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccccccCCCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHhhCCCCCcH
Q psy9056          81 EPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAP  160 (359)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (359)
                      |+             +++.+.+.+++++++..++.                                           +.
T Consensus       182 ~~-------------~~l~~~a~~~a~~la~~~~~-------------------------------------------a~  205 (258)
T 2pbp_A          182 SP-------------ELLMEETMRLAGRLAEQPPL-------------------------------------------AL  205 (258)
T ss_dssp             CG-------------GGHHHHHHHHHHHHHTSCHH-------------------------------------------HH
T ss_pred             Ch-------------HHHHHHHHHHHHHHHhCCHH-------------------------------------------HH
Confidence            98             88999999999999988762                                           23


Q ss_pred             HHHHHHHHHhhccChhhHHHHHHHHhhhhhcChhhHHHHHhHhhhhhhhhc
Q psy9056         161 LKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQTECKKN  211 (359)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~s~~~~~~~~af~~k~~~~~~  211 (359)
                      ..+|+.++.....+++++++.|.+.+..++.|+|++|++++|++||+|+|.
T Consensus       206 ~~~K~~l~~~~~~~~~~~l~~e~~~~~~~~~s~d~~eg~~af~ekr~p~~~  256 (258)
T 2pbp_A          206 RLIKEAVQKAVDYPLYEGMQFERKNFYLLFASEDQKEGMAAFLEKRKPRFQ  256 (258)
T ss_dssp             HHHHHHHHHHHHSCHHHHHHHHHHHHHHHTTSHHHHHHHHHHHTTSCCCCC
T ss_pred             HHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHccCCCCCC
Confidence            356777888888899999999999999999999999999999999988763

>1nzy_A Dehalogenase, 4-chlorobenzoyl coenzyme A dehalogenase; lyase; HET: BCA; 1.80A {Pseudomonas SP} SCOP: c.14.1.3 PDB: 1jxz_A* 1nzy_B*

Probab=99.97  E-value=1.2e-30  Score=242.60  Aligned_cols=158  Identities=16%  Similarity=0.200  Sum_probs=145.0

Q ss_pred             CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceec
Q psy9056           1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLV   80 (359)
Q Consensus         1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~   80 (359)
                      |+|+|||++|+++|||||++++  ++|++||+++|++|++|++++|++++|..++++|++||++++++||+++||||+++
T Consensus       109 G~a~GgG~~lal~cD~ria~~~--a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~ltg~~~~a~eA~~~GLv~~vv  186 (269)
T 1nzy_A          109 GVAAGGGLGISLASDMAICADS--AKFVCAWHTIGIGNDTATSYSLARIVGMRRAMELMLTNRTLYPEEAKDWGLVSRVY  186 (269)
T ss_dssp             SEEETHHHHHHHHSSEEEEETT--CEEECCHHHHTCCCCTTHHHHHHHHHHHHHHHHHHHHCCCBCHHHHHHHTSCSCEE
T ss_pred             CeeecHHHHHHHhCCEEEecCC--CEEeCcccccCCCCCccHHHHHHHHhhHHHHHHHHHcCCCCCHHHHHHCCCccEee
Confidence            6799999999999999999998  99999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccccccCCCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHhhCCCCCcH
Q psy9056          81 EPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAP  160 (359)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (359)
                      |+             +++.+.+.+++++|+..++.                                           +.
T Consensus       187 ~~-------------~~l~~~a~~~a~~la~~~p~-------------------------------------------a~  210 (269)
T 1nzy_A          187 PK-------------DEFREVAWKVARELAAAPTH-------------------------------------------LQ  210 (269)
T ss_dssp             CH-------------HHHHHHHHHHHHHHHHSCHH-------------------------------------------HH
T ss_pred             CH-------------HHHHHHHHHHHHHHHcCCHH-------------------------------------------HH
Confidence            98             89999999999999998762                                           22


Q ss_pred             HHHHHHHHHhhccChhhHHHHHHHHhhhhhcChhhHHHHHhHhhhhhhhhcCCCCC
Q psy9056         161 LKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQTECKKNRLGKP  216 (359)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~s~~~~~~~~af~~k~~~~~~~~~~~  216 (359)
                      ..+|+.++.....+++++++.|.+.+..++.|+|++|++++|++||+|+|.....|
T Consensus       211 ~~~K~~l~~~~~~~~~~~l~~e~~~~~~~~~s~d~~egi~af~ekr~p~f~~~~l~  266 (269)
T 1nzy_A          211 VMAKERFHAGWMQPVEECTEFEIQNVIASVTHPHFMPCLTRFLDGHRADRPQVELP  266 (269)
T ss_dssp             HHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHSTTHHHHHHHHHTTCCTTCCSSCCC
T ss_pred             HHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCCCCCC
Confidence            35667778777788999999999999999999999999999999999988654443

>3sll_A Probable enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.35A {Mycobacterium abscessus}

Probab=99.97  E-value=1.7e-30  Score=243.86  Aligned_cols=153  Identities=20%  Similarity=0.220  Sum_probs=143.3

Q ss_pred             CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCC-cchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCccee
Q psy9056           1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPG-AGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQL   79 (359)
Q Consensus         1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~-~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~   79 (359)
                      |+|+|||++|+++||+|||+++  ++|++||+++|++|+ +|++++|++++|..++++|++||++++|+||+++||||++
T Consensus       132 G~a~GgG~~LalacD~ria~~~--a~f~~pe~~~Gl~p~~~g~~~~L~r~vG~~~A~~llltG~~i~A~eA~~~GLV~~v  209 (290)
T 3sll_A          132 GAAIGGGLCLALACDVRVASQD--AYFRAAGINNGLTASELGLSYLLPRAIGTSRASDIMLTGRDVDADEAERIGLVSRK  209 (290)
T ss_dssp             SEEETHHHHHHHHSSEEEEETT--CEEECTTTTTTSCSCCTTHHHHHHHHHCHHHHHHHHHHCCCEEHHHHHHHTSSSEE
T ss_pred             CeehHHHHHHHHHCCEEEEeCC--CEEECchhccCcCCCcccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHCCCccEE
Confidence            6799999999999999999998  999999999999999 9999999999999999999999999999999999999999


Q ss_pred             cCCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccccccCCCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHhhCCCCCc
Q psy9056          80 VEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPA  159 (359)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (359)
                      +|+             +++.+.+.+++++|+..|+.                                           +
T Consensus       210 v~~-------------~~l~~~a~~~a~~la~~~~~-------------------------------------------a  233 (290)
T 3sll_A          210 VAS-------------ESLLEECYAIGERIAGFSRP-------------------------------------------G  233 (290)
T ss_dssp             ECG-------------GGHHHHHHHHHHHHHHSCHH-------------------------------------------H
T ss_pred             eCh-------------hHHHHHHHHHHHHHHcCCHH-------------------------------------------H
Confidence            998             88999999999999998772                                           2


Q ss_pred             HHHHHHHHHHhhc-cChhhHHHHHHHHhhhhh-cChhhHHHHHhHhhhhhhhhc
Q psy9056         160 PLKILDVVRTGIE-KGPSAGYEAEAEGFSQLA-MTPQSKGLMGLFRAQTECKKN  211 (359)
Q Consensus       160 ~~~~~~~~~~~~~-~~~~~~~~~e~~~~~~~~-~s~~~~~~~~af~~k~~~~~~  211 (359)
                      ...+|+.++.... .+++++++.|.+.+..++ .|+|++||+++|++||+|+|.
T Consensus       234 ~~~~K~~l~~~~~~~~l~~~l~~e~~~~~~~~~~s~d~~eg~~AFlekR~P~f~  287 (290)
T 3sll_A          234 IELTKRTIWSGLDAASLESHMHQEGLGQLYVRLLTDNFEEATAARKEKRPAEFR  287 (290)
T ss_dssp             HHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTTSCCCCC
T ss_pred             HHHHHHHHHhhcccCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHcCCCCCCC
Confidence            3357788888888 899999999999999999 999999999999999998885

>2gtr_A CDY-like, chromodomain Y-like protein; structural genomics, structural genomics consortium, SGC, unknown function; 1.90A {Homo sapiens} PDB: 2fw2_A

Probab=99.97  E-value=1.4e-30  Score=241.06  Aligned_cols=152  Identities=19%  Similarity=0.148  Sum_probs=140.0

Q ss_pred             CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceec
Q psy9056           1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLV   80 (359)
Q Consensus         1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~   80 (359)
                      |.|+|||++|+++||+||++++  ++|++||+++|++|++|++++|++++|..++++|++||++++++||+++||||+++
T Consensus       110 G~a~GgG~~lalacD~ria~~~--a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~ltg~~~~a~eA~~~GLv~~vv  187 (261)
T 2gtr_A          110 GPAIGLGASILPLCDVVWANEK--AWFQTPYTTFGQSPDGCSTVMFPKIMGGASANEMLLSGRKLTAQEACGKGLVSQVF  187 (261)
T ss_dssp             SCEETHHHHTGGGSSEEEEETT--CEEECCTTTTTCCCCTTHHHHHHHHHCHHHHHHHHHHCCCEEHHHHHHTTSCSEEE
T ss_pred             CeEeeHHHHHHHhCCEEEEcCC--CEEeCchhccCCCccchHHHHHHHHcCHHHHHHHHHcCCCCCHHHHHHCCCccccc
Confidence            6899999999999999999998  99999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccccccCCCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHhhCCCCCcH
Q psy9056          81 EPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAP  160 (359)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (359)
                      |+             +++.+.+.+++++++..++.                                           +.
T Consensus       188 ~~-------------~~l~~~a~~~a~~la~~~p~-------------------------------------------a~  211 (261)
T 2gtr_A          188 WP-------------GTFTQEVMVRIKELASCNPV-------------------------------------------VL  211 (261)
T ss_dssp             CG-------------GGHHHHHHHHHHHHHTSCHH-------------------------------------------HH
T ss_pred             Ch-------------hHHHHHHHHHHHHHHhCCHH-------------------------------------------HH
Confidence            98             88999999999999988762                                           22


Q ss_pred             HHHHHHHHHhhccChhhHHHHHHHHhhhhhcChhhHHHHHhHhhhhhhhh
Q psy9056         161 LKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQTECKK  210 (359)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~s~~~~~~~~af~~k~~~~~  210 (359)
                      ..+|++++.....++++.++.|.+.+..++.|+|++|++.+|++||+|+|
T Consensus       212 ~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~s~d~~eg~~af~ekr~P~f  261 (261)
T 2gtr_A          212 EESKALVRCNMKMELEQANERECEVLKKIWGSAQGMDSMLKYLQRKIDEF  261 (261)
T ss_dssp             HHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHSTTTTHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHhccccCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHccCCCCC
Confidence            35667777776777899999999999999999999999999999999865

>3tlf_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, otholog; 2.15A {Mycobacterium avium subsp} SCOP: c.14.1.0

Probab=99.97  E-value=1.5e-30  Score=242.47  Aligned_cols=152  Identities=16%  Similarity=0.112  Sum_probs=142.6

Q ss_pred             CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCC--CCCHHHHHHcCCcce
Q psy9056           1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGK--TLKADKAKKMGIVDQ   78 (359)
Q Consensus         1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~--~~~a~eA~~~Glv~~   78 (359)
                      |+|+|||++|+++||+|||+++  ++|++||+++|++| +|++++|++++|..++++|++||+  +++|+||+++||||+
T Consensus       119 G~a~GgG~~lalacD~~ia~~~--a~f~~pe~~~Gl~p-~g~~~~L~r~vG~~~A~~l~ltg~~~~~~A~eA~~~GLv~~  195 (274)
T 3tlf_A          119 GICCGAGMDWVTTTDIVIASEQ--ATFFDPHVSIGLVA-GRELVRVSRVLPRSIALRMALMGKHERMSAQRAYELGLISE  195 (274)
T ss_dssp             SEEEGGGHHHHHHSSEEEEETT--CEEECCGGGGTCCC-CHHHHHHTTTSCHHHHHHHHHHGGGCCEEHHHHHHHTSSSE
T ss_pred             CeeehHHHHHHHhCCEEEEcCC--CEEECcccccCccc-chHHHHHHHHhCHHHHHHHHHcCCCCccCHHHHHHCCCCCe
Confidence            6799999999999999999998  99999999999999 999999999999999999999999  999999999999999


Q ss_pred             ecCCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccccccCCCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHhhCCCCC
Q psy9056          79 LVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYP  158 (359)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (359)
                      ++|+             +++.+.+.+++++|+..++.                                           
T Consensus       196 vv~~-------------~~l~~~a~~~a~~la~~~~~-------------------------------------------  219 (274)
T 3tlf_A          196 IVEH-------------DRLLERAHEIADIVNSNAPL-------------------------------------------  219 (274)
T ss_dssp             EECG-------------GGHHHHHHHHHHHHHTSCHH-------------------------------------------
T ss_pred             ecCH-------------HHHHHHHHHHHHHHHhCCHH-------------------------------------------
Confidence            9998             88999999999999998762                                           


Q ss_pred             cHHHHHHHHHHhhccChhhHHHHHHHHhhhhhcChhhHHHHHhHhhhhhhhhc
Q psy9056         159 APLKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQTECKKN  211 (359)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~s~~~~~~~~af~~k~~~~~~  211 (359)
                      +...+|++++.....+++++++.|.+.+..++.|+|++|++++|++||+|+|.
T Consensus       220 a~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~eg~~af~ekr~p~f~  272 (274)
T 3tlf_A          220 AVRGTRLAILKGLNVPLHEAEILAETFRERVLRTEDAAEGPRAFVEKRQPNWQ  272 (274)
T ss_dssp             HHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTTSCCCCC
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHhcCCCCCCC
Confidence            33367788888888899999999999999999999999999999999998874

>1mj3_A Enoyl-COA hydratase, mitochondrial; homohexamer, lyase; HET: HXC; 2.10A {Rattus norvegicus} SCOP: c.14.1.3 PDB: 2dub_A* 1dub_A* 1ey3_A* 2hw5_A*

Probab=99.97  E-value=1.9e-30  Score=239.97  Aligned_cols=153  Identities=26%  Similarity=0.374  Sum_probs=142.6

Q ss_pred             CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceec
Q psy9056           1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLV   80 (359)
Q Consensus         1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~   80 (359)
                      |+|+|||++|+++|||||++++  ++|++||+++|++|++|++++|++++|..++++|++||++++++||+++||||+++
T Consensus       106 G~a~GgG~~lalacD~ria~~~--a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~ltg~~~~a~eA~~~GLv~~vv  183 (260)
T 1mj3_A          106 GYALGGGCELAMMCDIIYAGEK--AQFGQPEILLGTIPGAGGTQRLTRAVGKSLAMEMVLTGDRISAQDAKQAGLVSKIF  183 (260)
T ss_dssp             SEEETHHHHHHHHSSEEEEETT--CEEECGGGGGTCCCCSSTTTHHHHHHCHHHHHHHHHHCCCEEHHHHHHHTSCSEEE
T ss_pred             CEEEeHHHHHHHhCCEEEEcCC--CEEeCcccccCCCCCccHHHHHHHHhCHHHHHHHHHcCCcCCHHHHHHcCCccEEe
Confidence            6799999999999999999998  99999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccccccCCCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHhhCCCCCcH
Q psy9056          81 EPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAP  160 (359)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (359)
                      |+             +++.+.+.+++++++..++.                                           +.
T Consensus       184 ~~-------------~~l~~~a~~~a~~la~~~~~-------------------------------------------a~  207 (260)
T 1mj3_A          184 PV-------------ETLVEEAIQCAEKIANNSKI-------------------------------------------IV  207 (260)
T ss_dssp             CT-------------TTHHHHHHHHHHHHHHSCHH-------------------------------------------HH
T ss_pred             Ch-------------HHHHHHHHHHHHHHHcCCHH-------------------------------------------HH
Confidence            98             78999999999999998762                                           23


Q ss_pred             HHHHHHHHHhhccChhhHHHHHHHHhhhhhcChhhHHHHHhHhhhhhhhhc
Q psy9056         161 LKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQTECKKN  211 (359)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~s~~~~~~~~af~~k~~~~~~  211 (359)
                      ..+|+.++.....+++++++.|.+.+..++.|+|++|++++|++||+|+|.
T Consensus       208 ~~~K~~l~~~~~~~~~~~l~~e~~~~~~~~~s~d~~egi~af~~kr~p~~~  258 (260)
T 1mj3_A          208 AMAKESVNAAFEMTLTEGNKLEKKLFYSTFATDDRREGMSAFVEKRKANFK  258 (260)
T ss_dssp             HHHHHHHHGGGSSCHHHHHHHHHHHHHHGGGSHHHHHHHHHHHTTSCCCCC
T ss_pred             HHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHcCCCCCCC
Confidence            357788888888899999999999999999999999999999999988764

>2ej5_A Enoyl-COA hydratase subunit II; structural genomics, GK2038, NPPSFA, national project on prote structural and functional analyses; 2.00A {Geobacillus kaustophilus}

Probab=99.97  E-value=2e-30  Score=239.55  Aligned_cols=153  Identities=22%  Similarity=0.275  Sum_probs=142.2

Q ss_pred             CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceec
Q psy9056           1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLV   80 (359)
Q Consensus         1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~   80 (359)
                      |+|+|||++|+++||||||+++  ++|++||+++|++|++|++++|++++|..++++|++||++++++||+++||||+++
T Consensus       103 G~a~GgG~~lalacD~ria~~~--a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~ltg~~~~a~eA~~~GLv~~vv  180 (257)
T 2ej5_A          103 GAAAGAGMSLALACDFRLLSEK--ASFAPAFIHVGLVPDAGHLYYLPRLVGRAKALELAVLGEKVTAEEAAALGLATKVI  180 (257)
T ss_dssp             SEEETHHHHHHHHSSEEEEETT--CEEECCGGGGTCCCCTTHHHHHHHHHCHHHHHHHHHHCCCEEHHHHHHHTCCSEEE
T ss_pred             ccccchhHHHHHhCCEEEEcCC--CEEeCcccccCCCCcchHHHHHHHHhCHHHHHHHHHhCCccCHHHHHHcCCcceec
Confidence            6799999999999999999998  99999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccccccCCCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHhhCCCCCcH
Q psy9056          81 EPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAP  160 (359)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (359)
                      |+             +++.+.+.+++++++..++.                                           +.
T Consensus       181 ~~-------------~~l~~~a~~~a~~la~~~~~-------------------------------------------a~  204 (257)
T 2ej5_A          181 PL-------------SDWEEEVKQFAERLSAMPTK-------------------------------------------AI  204 (257)
T ss_dssp             CG-------------GGHHHHHHHHHHHHHTSCHH-------------------------------------------HH
T ss_pred             Ch-------------hHHHHHHHHHHHHHHhCCHH-------------------------------------------HH
Confidence            98             88999999999999998762                                           22


Q ss_pred             HHHHHHHHHhhccChhhHHHHHHHHhhhhhcChhhHHHHHhHhhhhhhhhc
Q psy9056         161 LKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQTECKKN  211 (359)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~s~~~~~~~~af~~k~~~~~~  211 (359)
                      ..+|+.++.....+++++++.|.+.+..++.|+|++|++++|++||+|+|.
T Consensus       205 ~~~K~~l~~~~~~~~~~~l~~e~~~~~~~~~s~d~~eg~~af~ekr~p~~~  255 (257)
T 2ej5_A          205 GLIKRLLRESEETTFDRYLEREAECQRIAGLTSDHREGVKAFFEKRKPLFQ  255 (257)
T ss_dssp             HHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSHHHHHHHHHHTTTCCCCCC
T ss_pred             HHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCChHHHHHHHHHhcCCCCCCC
Confidence            356777888778899999999999999999999999999999999998774

>2ppy_A Enoyl-COA hydratase; beta-oxidation, fatty acid metabol lyase, structural genomics, NPPSFA; 2.16A {Geobacillus kaustophilus}

Probab=99.97  E-value=2.6e-30  Score=239.73  Aligned_cols=153  Identities=28%  Similarity=0.369  Sum_probs=142.5

Q ss_pred             CCCCchHHHHHHhcCEEEEecCCce-EEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCccee
Q psy9056           1 MFAEPSLATVALACHYRIVVKDKKT-GLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQL   79 (359)
Q Consensus         1 ~~a~GgG~~lalacD~ria~~~~~~-~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~   79 (359)
                      |.|+|||++|+++||||||+++  + +|++||+++|++|++|++++|++++|..++++|++||++++++||+++||||++
T Consensus       110 G~a~GgG~~lalacD~ria~~~--ag~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~ltg~~~~a~eA~~~GLv~~v  187 (265)
T 2ppy_A          110 GHTVGGGLEMALACDLRFMGDE--AGKIGLPEVSLGVLAGTGGTQRLARLIGYSRALDMNITGETITPQEALEIGLVNRV  187 (265)
T ss_dssp             SEEETHHHHHHHTSSEEEEETT--CCCEECCGGGGTCCCTTTHHHHHHHHHCHHHHHHHHHHCCCBCHHHHHHHTSSSEE
T ss_pred             CEEeeHHHHHHHhCCEEEEeCC--CCEEECcccccCCCCCchHHHHHHHHhCHHHHHHHHHhCCccCHHHHHHCCCccee
Confidence            6799999999999999999998  9 999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccccccCCCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHhhCCCCCc
Q psy9056          80 VEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPA  159 (359)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (359)
                      +|+             +++.+.+.+++++++..++.                                           +
T Consensus       188 v~~-------------~~l~~~a~~~a~~la~~~~~-------------------------------------------a  211 (265)
T 2ppy_A          188 FPQ-------------AETRERTREYARKLANSATY-------------------------------------------A  211 (265)
T ss_dssp             ECG-------------GGHHHHHHHHHHHHHTSCHH-------------------------------------------H
T ss_pred             cCH-------------HHHHHHHHHHHHHHHhCCHH-------------------------------------------H
Confidence            998             88999999999999988762                                           2


Q ss_pred             HHHHHHHHHHhhccChhhHHHHHHHHhhhhhcChhhHHHHHhHhhhhhhhhc
Q psy9056         160 PLKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQTECKKN  211 (359)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~s~~~~~~~~af~~k~~~~~~  211 (359)
                      ...+|++++.+...+++++++.|.+.+..++.|+|++|++++|++||+|+|.
T Consensus       212 ~~~~K~~l~~~~~~~~~~~l~~e~~~~~~~~~s~d~~egi~af~ekr~p~~~  263 (265)
T 2ppy_A          212 VSNIKLAIMNGKEMPLNVAIRYEGELQNLLFRSEDAKEGLSAFLEKRQPNWK  263 (265)
T ss_dssp             HHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTTSCCCCC
T ss_pred             HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCCCCC
Confidence            3357777888878889999999999999999999999999999999998774

>3qre_A Enoyl-COA hydratase, ECHA12_1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.40A {Mycobacterium marinum M}

Probab=99.97  E-value=4.5e-31  Score=248.55  Aligned_cols=155  Identities=21%  Similarity=0.189  Sum_probs=107.0

Q ss_pred             CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceec
Q psy9056           1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLV   80 (359)
Q Consensus         1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~   80 (359)
                      |+|+|||++|+++||||||+++  ++|++||+++|++|++|++++|++++|..++++|++||++++|+||+++||||+++
T Consensus       139 G~a~GgG~~LalacD~ria~~~--a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~A~ellltg~~i~A~eA~~~GLV~~vv  216 (298)
T 3qre_A          139 GPCVGIGLTQALMCDVRFAAAG--AKFAAVFARRGLIAEFGISWILPRLTSWAVALDLLLSGRTFLAEEAAQLGLVKEVV  216 (298)
T ss_dssp             SCEETHHHHHHHHSSEEEEETT--CEEECCCCHHHHHCTTSHHHHHHHHSCHHHHHHHHHHCCEEEHHHHHHTTSCSEEE
T ss_pred             CceeecchHHHhhCCEEEEcCC--CEEECcccccCCCcchhHHHHHHHhcCHHHHHHHHHcCCCCCHHHHHHcCCCeEec
Confidence            6899999999999999999998  99999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCcchhhHHHHHHHHHHHHHHHhcC-ccccccCCCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHhhCCCCCc
Q psy9056          81 EPLGPGLNHPEERTMEYLEEVAVNTASQLASG-KLKINRTKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPA  159 (359)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~-~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (359)
                      |+             +++.+.+.+++++|+.. ++.                                           +
T Consensus       217 ~~-------------~~l~~~a~~~A~~la~~~~p~-------------------------------------------a  240 (298)
T 3qre_A          217 TP-------------EQLMPRALEYAEDIARYCSPS-------------------------------------------S  240 (298)
T ss_dssp             CG-------------GGHHHHHHHHHHHHHHHSCHH-------------------------------------------H
T ss_pred             CH-------------HHHHHHHHHHHHHHHccCCHH-------------------------------------------H
Confidence            98             88999999999999987 662                                           2


Q ss_pred             HHHHHHHHHHhhccChhhHHHHHHHHhhhhhcChhhHHHHHhHhhhhhhhhcCC
Q psy9056         160 PLKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQTECKKNRL  213 (359)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~s~~~~~~~~af~~k~~~~~~~~  213 (359)
                      ...+|+++++....++++.+..|.+.+..++.|+|++||+++|++||+|+|.++
T Consensus       241 ~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~d~~Egv~AF~ekR~P~f~~~  294 (298)
T 3qre_A          241 MAVIKRQVYGDATRDVVEATSHAEVLLREAMPRPDVIEGIVSFLEKRPPQFPSL  294 (298)
T ss_dssp             HHHHHHHHHGGGGC----------------------------------------
T ss_pred             HHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCCCCCCC
Confidence            335778888888889999999999999999999999999999999999998654

>3r9q_A Enoyl-COA hydratase/isomerase; ssgcid, lyase,isomerase; 2.10A {Mycobacterium abscessus} PDB: 3qka_A

Probab=99.96  E-value=1.2e-30  Score=241.40  Aligned_cols=151  Identities=25%  Similarity=0.253  Sum_probs=124.4

Q ss_pred             CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceec
Q psy9056           1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLV   80 (359)
Q Consensus         1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~   80 (359)
                      |.|+|||++|+++||+|||+++  ++|++||+++|++|++|++++|++++|..++++|++||++++|+||+++||||+++
T Consensus       110 G~a~GgG~~lalacD~ria~~~--a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~A~~l~ltG~~~~A~eA~~~GLv~~vv  187 (262)
T 3r9q_A          110 GHAVAGGIELALWCDLRVVEED--AVLGVFCRRWGVPLIDGGTIRLPRLIGHSRAMDLILTGRPVHANEALDIGLVNRVV  187 (262)
T ss_dssp             SEEETHHHHHHHHSSEEEEETT--CEEECTHHHHTCCCCSSHHHHHHHHHCHHHHHHHHHHCCCEEHHHHHHTTSCSEEE
T ss_pred             CeeehhhhHHHHhCCEEEEeCC--CEEecchhccCCCCCccHHHHHHHHhCHHHHHHHHHcCCcCCHHHHHHcCCccEec
Confidence            6799999999999999999998  99999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccccccCCCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHhhCCCCCcH
Q psy9056          81 EPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAP  160 (359)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (359)
                      |+             +++.+.+.+++++|+..|+.                                           +.
T Consensus       188 ~~-------------~~l~~~a~~~a~~la~~~~~-------------------------------------------a~  211 (262)
T 3r9q_A          188 AR-------------GQAREAAETLAAEIAAFPQQ-------------------------------------------CV  211 (262)
T ss_dssp             CT-------------TCHHHHHHHHHHHHHHSCHH-------------------------------------------HH
T ss_pred             Ch-------------hHHHHHHHHHHHHHHhCCHH-------------------------------------------HH
Confidence            98             78999999999999998772                                           23


Q ss_pred             HHHHHHHHHhhccChhhHHHHHHHHhhhhhcChhhHHHHHhHhhhhhhhhc
Q psy9056         161 LKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQTECKKN  211 (359)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~s~~~~~~~~af~~k~~~~~~  211 (359)
                      ..+|++++.....+++++++.|.+ +..++.| |++||+++|++||+|.+.
T Consensus       212 ~~~K~~~~~~~~~~l~~~l~~e~~-~~~~~~s-d~~Eg~~AF~ekr~p~~~  260 (262)
T 3r9q_A          212 RADRDSAIAQWGMAEEAALDNEFG-SIERVAT-EALEGAGRFAAGEGRHGA  260 (262)
T ss_dssp             HHHHHHHHHTTTSCHHHHHHHHHT-HHHHHHC-------------------
T ss_pred             HHHHHHHHhhhcCCHHHHHHHHHH-HHHHhcc-HHHHHHHHHHcCCCCCCC
Confidence            357788888888999999999999 9999999 999999999999998774

>3fdu_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2; 2.00A {Acinetobacter baumannii}

Probab=99.96  E-value=3.7e-30  Score=238.75  Aligned_cols=153  Identities=22%  Similarity=0.233  Sum_probs=129.5

Q ss_pred             CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceec
Q psy9056           1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLV   80 (359)
Q Consensus         1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~   80 (359)
                      |.|+|||++|+++||+||++++  ++|++||+++|++|++|++++|++++|..++++|++||++++|+||+++||||+++
T Consensus       108 G~a~GgG~~lalacD~ria~~~--a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~A~~l~ltg~~i~A~eA~~~GLv~~vv  185 (266)
T 3fdu_A          108 GVAIGIGVTILLQADLVFADNT--ALFQIPFVSLGLSPEGGASQLLVKQAGYHKAAELLFTAKKFNAETALQAGLVNEIV  185 (266)
T ss_dssp             SEEETHHHHGGGGCSEEEECTT--CEEECCTTTTTCCCCTTHHHHHHHHHCHHHHHHHHHHCCEECHHHHHHTTSCSEEC
T ss_pred             CEEehHHHHHHHhCCEEEEcCC--CEEECchhhhCCCCcchHHHHHHHHhCHHHHHHHHHhCCCcCHHHHHHCCCHHHHH
Confidence            6799999999999999999998  99999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccccccCCCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHhhCCCCCcH
Q psy9056          81 EPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAP  160 (359)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (359)
                      |+               +.+.+.+++++|+..|+..                                           .
T Consensus       186 ~~---------------l~~~a~~~a~~la~~~~~a-------------------------------------------~  207 (266)
T 3fdu_A          186 ED---------------AYATAQATAQHLTALPLAS-------------------------------------------L  207 (266)
T ss_dssp             SC---------------HHHHHHHHHHHHHTSCHHH-------------------------------------------H
T ss_pred             HH---------------HHHHHHHHHHHHHhCCHHH-------------------------------------------H
Confidence            84               7889999999999987732                                           2


Q ss_pred             HHHHHHHHHhhccChhhHHHHHHHHhhhhhcChhhHHHHHhHhhhhhhhhcCCC
Q psy9056         161 LKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQTECKKNRLG  214 (359)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~s~~~~~~~~af~~k~~~~~~~~~  214 (359)
                      ..+|++++... .+++++++.|.+.+..++.|+|++||+++|++||+|.|++.+
T Consensus       208 ~~~K~~l~~~~-~~l~~~l~~e~~~~~~~~~s~d~~eg~~aF~ekR~p~~~~~~  260 (266)
T 3fdu_A          208 KQTKALMKHDL-DQIIECIDHEAEIFMQRVQSPEMLEAVQAFMQKRQPDFSQEG  260 (266)
T ss_dssp             HHHHHHHTTTH-HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHC-----------
T ss_pred             HHHHHHHHhhh-ccHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCCCCCCCC
Confidence            24556666554 468899999999999999999999999999999999997543

>1wz8_A Enoyl-COA hydratase; lyase, crotonase, hexamer, structural genomics, riken S genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.14.1.3

Probab=99.96  E-value=3.1e-30  Score=239.10  Aligned_cols=151  Identities=19%  Similarity=0.122  Sum_probs=139.6

Q ss_pred             CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceec
Q psy9056           1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLV   80 (359)
Q Consensus         1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~   80 (359)
                      |.|+|||++|+++||||||+++  ++|++||+++|++|++|++++|++++|..++++|++||++++++||+++||||+++
T Consensus       113 G~a~GgG~~lalacD~ria~~~--a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~ltg~~~~a~eA~~~GLv~~vv  190 (264)
T 1wz8_A          113 KVAVGAGLALALAADIAVVGKG--TRLLDGHLRLGVAAGDHAVLLWPLLVGMAKAKYHLLLNEPLTGEEAERLGLVALAV  190 (264)
T ss_dssp             SEEETHHHHHHHHSSEEEEETT--CEEECCHHHHTSCCTTTHHHHTHHHHCHHHHHHHHHHTCCEEHHHHHHHTSSSEEE
T ss_pred             CeeechhHHHHHhCCEEEecCC--CEEeCchhhcCcCCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHCCCceeec
Confidence            6799999999999999999998  99999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccccccCCCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHhhCCCCCcH
Q psy9056          81 EPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAP  160 (359)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (359)
                      |+             +++.+.+.+++++++..++.                                           +.
T Consensus       191 ~~-------------~~l~~~a~~~a~~la~~~~~-------------------------------------------a~  214 (264)
T 1wz8_A          191 ED-------------EKVYEKALEVAERLAQGPKE-------------------------------------------AL  214 (264)
T ss_dssp             CG-------------GGHHHHHHHHHHHHHTSCHH-------------------------------------------HH
T ss_pred             Ch-------------hHHHHHHHHHHHHHHhCCHH-------------------------------------------HH
Confidence            98             88999999999999988762                                           22


Q ss_pred             HHHHHHHHHhhccChhhHHHHHHHHhhhhhcChhhHHHHHhHhhhhhhhh
Q psy9056         161 LKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQTECKK  210 (359)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~s~~~~~~~~af~~k~~~~~  210 (359)
                      ..+|+.++..... ++++++.|.+.+..++.|+|++|++++|++||+|+|
T Consensus       215 ~~~K~~l~~~~~~-~~~~l~~e~~~~~~~~~s~d~~eg~~af~ekr~p~f  263 (264)
T 1wz8_A          215 HHTKHALNHWYRS-FLPHFELSLALEFLGFSGKELEEGLKALKEKRPPEF  263 (264)
T ss_dssp             HHHHHHHHHHHHT-THHHHHHHHHHHHHGGGSHHHHHHHHHHHTTSCCCC
T ss_pred             HHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcChHHHHHHHHHHccCCCCC
Confidence            3466777777777 899999999999999999999999999999998876

>2fbm_A Y chromosome chromodomain protein 1, telomeric IS; acetyltransferase, structural genomics, structural genomics consortium, SGC, unknown function; 2.28A {Homo sapiens} SCOP: c.14.1.3

Probab=99.96  E-value=1.6e-30  Score=243.90  Aligned_cols=154  Identities=18%  Similarity=0.121  Sum_probs=133.6

Q ss_pred             CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceec
Q psy9056           1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLV   80 (359)
Q Consensus         1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~   80 (359)
                      |.|+|||++|+++||+|||+++  ++|++||+++|++|++|++++|++++|..+|++|++||++++|+||+++||||+++
T Consensus       128 G~a~GgG~~LalacD~ria~~~--a~f~~pe~~lGl~p~~g~~~~L~r~vG~~~A~el~ltg~~i~A~eA~~~GLV~~vv  205 (291)
T 2fbm_A          128 GPAIGLGASILPLCDLVWANEK--AWFQTPYTTFGQSPDGCSSITFPKMMGKASANEMLIAGRKLTAREACAKGLVSQVF  205 (291)
T ss_dssp             SCEETHHHHTGGGSSEEEEETT--CEEECCHHHHTCCCCTTHHHHHHHHHCHHHHHHHHTSCCEEEHHHHHHTTSCSEEE
T ss_pred             CeeecHHHHHHHhCCEEEEeCC--CEEECcHHhcCCCCcccHHHHHHHHHhHHHHHHHHHcCCccCHHHHHHCCCcceec
Confidence            6899999999999999999998  99999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccccccCCCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHhhCCCCCcH
Q psy9056          81 EPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAP  160 (359)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (359)
                      |+             +++.+.+.+++++|+..|+.                                           +.
T Consensus       206 ~~-------------~~l~~~a~~~a~~la~~~p~-------------------------------------------a~  229 (291)
T 2fbm_A          206 LT-------------GTFTQEVMIQIKELASYNPI-------------------------------------------VL  229 (291)
T ss_dssp             CS-------------TTSHHHHHHHHHHHTTSCHH-------------------------------------------HH
T ss_pred             Ch-------------hHHHHHHHHHHHHHHhCCHH-------------------------------------------HH
Confidence            98             78999999999999988762                                           22


Q ss_pred             HHHHHHHHHhhccChhhHHHHHHHHhhhhhcChhhHHHHHhH-hhhhhhhhcC
Q psy9056         161 LKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLF-RAQTECKKNR  212 (359)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~s~~~~~~~~af-~~k~~~~~~~  212 (359)
                      ..+|++++.....+++++++.|.+.+..++.|+|++|++++| ++||+|.|..
T Consensus       230 ~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~eg~~Af~~ekR~P~f~~  282 (291)
T 2fbm_A          230 EECKALVRCNIKLELEQANERECEVLRKIWSSAQGIESMLKIPLLGYKAAFPP  282 (291)
T ss_dssp             HHHHHHHHTTTHHHHHHHHHHHHHHHHHHHTSHHHHHHHHTC-----------
T ss_pred             HHHHHHHHhhhccCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCCC
Confidence            356677777767778999999999999999999999999999 9999998854

>1ef8_A Methylmalonyl COA decarboxylase; lyase; 1.85A {Escherichia coli} SCOP: c.14.1.3 PDB: 1ef9_A*

Probab=99.96  E-value=3.3e-30  Score=238.55  Aligned_cols=153  Identities=17%  Similarity=0.123  Sum_probs=142.0

Q ss_pred             CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceec
Q psy9056           1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLV   80 (359)
Q Consensus         1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~   80 (359)
                      |.|+|||++|+++||||||+++  ++|++||+++|++|++|++++|++++|..++++|++||++++++||+++||||+++
T Consensus       105 G~a~GgG~~lalacD~ria~~~--a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~ltg~~~~a~eA~~~GLv~~vv  182 (261)
T 1ef8_A          105 GSVWGGAFEMIMSSDLIIAAST--STFSMTPVNLGVPYNLVGIHNLTRDAGFHIVKELIFTASPITAQRALAVGILNHVV  182 (261)
T ss_dssp             SEEETHHHHHHHHSSEEEEETT--CEEECCHHHHTCCCCHHHHHTTSSSSCHHHHHHHHHHCCCEEHHHHHHTTSCSEEE
T ss_pred             CEEEeHhHHHHHhCCEEEecCC--CEEeCchhccCCCCCccHHHHHHHHhCHHHHHHHHHcCCccCHHHHHHCCCccccc
Confidence            6799999999999999999998  99999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccccccCCCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHhhCCCCCcH
Q psy9056          81 EPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAP  160 (359)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (359)
                      |+             +++.+.+.+++++++..++.                                           +.
T Consensus       183 ~~-------------~~l~~~a~~~a~~la~~~~~-------------------------------------------a~  206 (261)
T 1ef8_A          183 EV-------------EELEDFTLQMAHHISEKAPL-------------------------------------------AI  206 (261)
T ss_dssp             CH-------------HHHHHHHHHHHHHHTTSCHH-------------------------------------------HH
T ss_pred             CH-------------HHHHHHHHHHHHHHHhCCHH-------------------------------------------HH
Confidence            98             89999999999999998762                                           22


Q ss_pred             HHHHHHHHHhhccChhhHHHHHHHHhh--hhhcChhhHHHHHhHhhhhhhhhc
Q psy9056         161 LKILDVVRTGIEKGPSAGYEAEAEGFS--QLAMTPQSKGLMGLFRAQTECKKN  211 (359)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~e~~~~~--~~~~s~~~~~~~~af~~k~~~~~~  211 (359)
                      ..+|+.++.....+++++++.|.+.+.  .++.|+|++|++++|++||+|+|.
T Consensus       207 ~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~s~d~~eg~~af~ekr~p~~~  259 (261)
T 1ef8_A          207 AVIKEELRVLGEAHTMNSDEFERIQGMRRAVYDSEDYQEGMNAFLEKRKPNFV  259 (261)
T ss_dssp             HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHTSHHHHHHHHHHHTTSCCCCC
T ss_pred             HHHHHHHHHhhcCCHHHHHHHHHHHhhHHHhhcCHHHHHHHHHHHccCCCCCC
Confidence            356777787777889999999999999  999999999999999999998774

>3myb_A Enoyl-COA hydratase; ssgcid, struct genomics, seattle structural genomics center for infectious lyase; 1.55A {Mycobacterium smegmatis}

Probab=99.96  E-value=8.3e-30  Score=238.65  Aligned_cols=153  Identities=17%  Similarity=0.246  Sum_probs=142.4

Q ss_pred             CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceec
Q psy9056           1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLV   80 (359)
Q Consensus         1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~   80 (359)
                      |+|+|||++|+++||||||+++  ++|++||+++|++ ++|++++|++++|..++++|++||++++|+||+++||||+++
T Consensus       128 G~a~GgG~~lalacD~ria~~~--a~f~~pe~~lGl~-~~g~~~~L~r~vG~~~A~~llltG~~i~A~eA~~~GLv~~vv  204 (286)
T 3myb_A          128 GIATAAGCQLVAMCDLAVATRD--ARFAVSGINVGLF-CSTPGVALSRNVGRKAAFEMLVTGEFVSADDAKGLGLVNRVV  204 (286)
T ss_dssp             SCEETHHHHHHHHSSEEEEETT--CEEECGGGGGTCC-CHHHHHHHTTTSCHHHHHHHHHHCCCEEHHHHHHHTSCSEEE
T ss_pred             CeehHHHHHHHHhCCEEEEcCC--CEEECcccccCCC-CchHHHHHHHHcCHHHHHHHHHcCCCCCHHHHHHCCCCcEec
Confidence            6899999999999999999998  9999999999999 888999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccccccCCCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHhhCCCCCcH
Q psy9056          81 EPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAP  160 (359)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (359)
                      |+             +++.+.+.+++++++..++.                                           +.
T Consensus       205 ~~-------------~~l~~~a~~~a~~la~~~p~-------------------------------------------a~  228 (286)
T 3myb_A          205 AP-------------KALDDEIEAMVSKIVAKPRA-------------------------------------------AV  228 (286)
T ss_dssp             CG-------------GGHHHHHHHHHHHHHHSCHH-------------------------------------------HH
T ss_pred             CH-------------HHHHHHHHHHHHHHHhCCHH-------------------------------------------HH
Confidence            98             88999999999999988762                                           23


Q ss_pred             HHHHHHHHHhhccChhhHHHHHHHHhhhhhcChhhHHHHHhHhhhhhhhhcC
Q psy9056         161 LKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQTECKKNR  212 (359)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~s~~~~~~~~af~~k~~~~~~~  212 (359)
                      ..+|+.++.....+++++++.|.+.+..++.|+|++|++++|++||+|+|..
T Consensus       229 ~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~egi~aFlekr~p~f~g  280 (286)
T 3myb_A          229 AMGKALFYRQIETDIESAYADAGTTMACNMMDPSALEGVSAFLEKRRPEWHT  280 (286)
T ss_dssp             HHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHSHHHHHHHHHHHTTSCCCCCC
T ss_pred             HHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHccCCCCCCC
Confidence            3567788888888999999999999999999999999999999999998853

>1dci_A Dienoyl-COA isomerase; lyase; 1.50A {Rattus norvegicus} SCOP: c.14.1.3 PDB: 2vre_A

Probab=99.96  E-value=1e-29  Score=237.09  Aligned_cols=154  Identities=18%  Similarity=0.130  Sum_probs=141.5

Q ss_pred             CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcCh-HHHHHHHhcCCCCCHHHHHHcCCccee
Q psy9056           1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTAL-PNVLDMTLTGKTLKADKAKKMGIVDQL   79 (359)
Q Consensus         1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~-~~a~~~~ltg~~~~a~eA~~~Glv~~~   79 (359)
                      |+|+|||++|+++||||||+++  ++|++||+++|++|++|++++|++++|. .++++|++||++++++||+++||||++
T Consensus       116 G~a~GgG~~lalacD~ria~~~--a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~~A~~l~ltg~~~~a~eA~~~GLv~~v  193 (275)
T 1dci_A          116 GGCIGGGVDLISACDIRYCTQD--AFFQVKEVDVGLAADVGTLQRLPKVIGNRSLVNELTFTARKMMADEALDSGLVSRV  193 (275)
T ss_dssp             SEEETHHHHHHTTSSEEEEETT--CEEECCGGGGTSCCCSSHHHHGGGTCSCHHHHHHHHHHCCEEEHHHHHHHTSSSEE
T ss_pred             CeeeHHHHHHHHhCCEEEEeCC--CEEeCcccccCCCCCccHHHHHHHHhCcHHHHHHHHHcCCCCCHHHHHHcCCccee
Confidence            6799999999999999999998  9999999999999999999999999999 999999999999999999999999999


Q ss_pred             cCCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccccccCCCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHhhCCCCCc
Q psy9056          80 VEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPA  159 (359)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (359)
                      +|+.            +++.+.+.+++++|+..++.                                           +
T Consensus       194 v~~~------------~~l~~~a~~~a~~la~~~p~-------------------------------------------a  218 (275)
T 1dci_A          194 FPDK------------DVMLNAAFALAADISSKSPV-------------------------------------------A  218 (275)
T ss_dssp             ESSH------------HHHHHHHHHHHHHHHHSCHH-------------------------------------------H
T ss_pred             cCCh------------HHHHHHHHHHHHHHHhCCHH-------------------------------------------H
Confidence            9862            67899999999999998762                                           2


Q ss_pred             HHHHHHHHHHhhccChhhHHHHHHHHhhhhhcChhhHHHHHhHhhh---hhhhhc
Q psy9056         160 PLKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQ---TECKKN  211 (359)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~s~~~~~~~~af~~k---~~~~~~  211 (359)
                      ...+|++++.+...+++++++.|.+.+..++.|+|++||+++|++|   |+|+|.
T Consensus       219 ~~~~K~~l~~~~~~~~~~~l~~e~~~~~~~~~s~d~~eg~~af~ek~~~r~p~f~  273 (275)
T 1dci_A          219 VQGSKINLIYSRDHSVDESLDYMATWNMSMLQTQDIIKSVQAAMEKKDSKSITFS  273 (275)
T ss_dssp             HHHHHHHHHHHHHSCHHHHHHHHHHHHHHHTSSHHHHHHHHHHHTTCCGGGCCCC
T ss_pred             HHHHHHHHHHhccCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCCCC
Confidence            2356677788777889999999999999999999999999999999   888774

>1uiy_A Enoyl-COA hydratase; lyase, beta-oxidation, crotonase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.85A {Thermus thermophilus} SCOP: c.14.1.3

Probab=99.96  E-value=4.5e-30  Score=236.59  Aligned_cols=151  Identities=21%  Similarity=0.206  Sum_probs=140.1

Q ss_pred             CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceec
Q psy9056           1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLV   80 (359)
Q Consensus         1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~   80 (359)
                      |+|+|||++|+++||||||+++  ++|++||+++|++|++| +++|++++|..++++|++||++++++||+++||||+++
T Consensus       103 G~a~GgG~~lal~cD~~ia~~~--a~f~~pe~~~Gl~p~~g-~~~l~r~vG~~~a~~l~ltg~~~~a~eA~~~Glv~~vv  179 (253)
T 1uiy_A          103 GPAVAGGAGLALACDLVVMDEE--ARLGYTEVKIGFVAALV-SVILVRAVGEKAAKDLLLTGRLVEAREAKALGLVNRIA  179 (253)
T ss_dssp             SCEETHHHHHHHTSSEEEEETT--CEEECCHHHHTCCCHHH-HHHHHHHSCHHHHHHHHHHCCEEEHHHHHHHTSCSEEE
T ss_pred             CeeeHHHHHHHHhCCEEEEcCC--cEEeCcccccCcCCchH-HHHHHHHhCHHHHHHHHHhCCccCHHHHHHCCCcceec
Confidence            6899999999999999999998  99999999999999999 99999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccccccCCCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHhhCCCCCcH
Q psy9056          81 EPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAP  160 (359)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (359)
                      |+             +++.+.+.+++++++..++.                                           +.
T Consensus       180 ~~-------------~~l~~~a~~~a~~la~~~~~-------------------------------------------a~  203 (253)
T 1uiy_A          180 PP-------------GKALEEAKALAEEVAKNAPT-------------------------------------------SL  203 (253)
T ss_dssp             CT-------------TCHHHHHHHHHHHHHHSCHH-------------------------------------------HH
T ss_pred             Ch-------------hHHHHHHHHHHHHHHcCCHH-------------------------------------------HH
Confidence            98             78999999999999988762                                           22


Q ss_pred             HHHHHHHHHhhccChhhHHHHHHHHhhhhhcChhhHHHHHhHhhhhhhhh
Q psy9056         161 LKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQTECKK  210 (359)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~s~~~~~~~~af~~k~~~~~  210 (359)
                      ..+|+.++.....+++++++.|.+.+..++.|+|++|++++|++||+|+|
T Consensus       204 ~~~K~~l~~~~~~~~~~~l~~e~~~~~~~~~s~d~~eg~~af~~kr~p~~  253 (253)
T 1uiy_A          204 RLTKELLLALPGMGLEDGFRLAALANAWVRETGDLAEGIRAFFEKRPPRF  253 (253)
T ss_dssp             HHHHHHHHHGGGSCHHHHHHHHHHHHHHGGGCHHHHHHHHHHHTTSCCCC
T ss_pred             HHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHhCcCCCCC
Confidence            35677888888889999999999999999999999999999999988754

>2vx2_A Enoyl-COA hydratase domain-containing protein 3; isomerase, fatty acid metabolism, transit peptide, lipid Met crontonase, mitochondrion, CAsp; 2.3A {Homo sapiens}

Probab=99.96  E-value=8.3e-30  Score=238.74  Aligned_cols=152  Identities=15%  Similarity=0.187  Sum_probs=140.6

Q ss_pred             CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceec
Q psy9056           1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLV   80 (359)
Q Consensus         1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~   80 (359)
                      |+|+|||++|+++||||||+++  ++|++||+++|++|++|+++ |++++|..++++|++||++++|+||+++||||+++
T Consensus       135 G~a~GgG~~LalacD~ria~~~--a~f~~pe~~lGl~p~~g~~~-L~r~vG~~~A~~llltg~~i~A~eA~~~GLv~~vv  211 (287)
T 2vx2_A          135 GLATAAGCQLVASCDIAVASDK--SSFATPGVNVGLFCSTPGVA-LARAVPRKVALEMLFTGEPISAQEALLHGLLSKVV  211 (287)
T ss_dssp             SEEETHHHHHHHHSSEEEEETT--CEEECCGGGGTCCCHHHHHH-HHTTSCHHHHHHHHHHCCCEEHHHHHHHTSCSEEE
T ss_pred             CEEEcHHHHHHHhCCEEEEcCC--CEEECchhhhCCCCchHHHH-HHHHhhHHHHHHHHHhCCCCCHHHHHHCCCcceec
Confidence            6799999999999999999998  99999999999999999999 99999999999999999999999999999999999


Q ss_pred             CCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccccccCCCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHhhCCCCCcH
Q psy9056          81 EPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAP  160 (359)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (359)
                      |+             +++.+.+.+++++|+..++.                                           +.
T Consensus       212 ~~-------------~~l~~~a~~~a~~la~~~p~-------------------------------------------a~  235 (287)
T 2vx2_A          212 PE-------------AELQEETMRIARKIASLSRP-------------------------------------------VV  235 (287)
T ss_dssp             CG-------------GGHHHHHHHHHHHHHTSCHH-------------------------------------------HH
T ss_pred             CH-------------HHHHHHHHHHHHHHHcCCHH-------------------------------------------HH
Confidence            98             88999999999999998762                                           22


Q ss_pred             HHHHHHHHHhhccChhhHHHHHHHHhhhhhcChhhHHHHHhHhhhhhhhhc
Q psy9056         161 LKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQTECKKN  211 (359)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~s~~~~~~~~af~~k~~~~~~  211 (359)
                      ..+|+.++.....+++++++.|.+.+..++.|+|++|++++|++||+|+|.
T Consensus       236 ~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~egi~af~ekr~p~f~  286 (287)
T 2vx2_A          236 SLGKATFYKQLPQDLGTAYYLTSQAMVDNLALRDGQEGITAFLQKRKPVWS  286 (287)
T ss_dssp             HHHHHHHHHHTTSCHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTTSCCCCC
T ss_pred             HHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCCCCC
Confidence            346677777777889999999999999999999999999999999998763

>3gkb_A Putative enoyl-COA hydratase; structural genomics, unknown function, PSI-2, protein struct initiative; 1.80A {Streptomyces avermitilis}

Probab=99.96  E-value=9.6e-30  Score=238.23  Aligned_cols=150  Identities=19%  Similarity=0.229  Sum_probs=135.8

Q ss_pred             CCCCchHHHHHHhcCEEEEec-CCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCccee
Q psy9056           1 MFAEPSLATVALACHYRIVVK-DKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQL   79 (359)
Q Consensus         1 ~~a~GgG~~lalacD~ria~~-~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~   79 (359)
                      |+|+|||++|+++||+|||++ +  ++|++||+++|++|++|++++|++++|..+|++|++||++++|+||+++||||++
T Consensus       115 G~a~GgG~~lalacD~ria~~~~--a~f~~pe~~lGl~p~~g~~~~L~r~vG~~~A~ellltG~~i~A~eA~~~GLV~~v  192 (287)
T 3gkb_A          115 GKARGGGAEFVAAADMAFAAAET--AGLGQIEALMGIIPGGGGTQYLRGRVGRNRALEVVLTADLFDAETAASYGWINRA  192 (287)
T ss_dssp             SEEETHHHHHHHHSSEEEEETTT--CEEECGGGGGTSCCCSSHHHHHHHHHCHHHHHHHHHHCCCEEHHHHHHHTSSSEE
T ss_pred             CeeehHHHHHHHHCCEEEEeCCC--cEEECcccccCCCCCchHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHCCCCcEE
Confidence            689999999999999999999 7  9999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccccccCCCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHhhCCCCCc
Q psy9056          80 VEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPA  159 (359)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (359)
                      +|+             +++.+.+.+++++|+..|+..                                           
T Consensus       193 v~~-------------~~l~~~a~~lA~~la~~~p~a-------------------------------------------  216 (287)
T 3gkb_A          193 LPA-------------DELDEYVDRVARNIAALPDGV-------------------------------------------  216 (287)
T ss_dssp             ECH-------------HHHHHHHHHHHHHHHTSCTTH-------------------------------------------
T ss_pred             eCh-------------hHHHHHHHHHHHHHHcCCHHH-------------------------------------------
Confidence            998             899999999999999987732                                           


Q ss_pred             HHHHHHHHHHhhccChhhHHHHHHHHhhhhhcChhhHHHHHhHhhhhh--hhhc
Q psy9056         160 PLKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQTE--CKKN  211 (359)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~s~~~~~~~~af~~k~~--~~~~  211 (359)
                      ...+|++++..   .++++++.|.+.+..++.|+|++||+++|++||+  |+|.
T Consensus       217 ~~~~K~~l~~~---~~~~~l~~e~~~~~~~~~s~d~~eg~~AF~ekr~~~P~f~  267 (287)
T 3gkb_A          217 IEAAKRSLPAD---DLKEGLLGENDAWAATFSLPAAQQLISGGLKDGAQTPAGE  267 (287)
T ss_dssp             HHHHHHHSCCC---CCHHHHHHHHHHHHHHHTSHHHHHHHHHHHHTTTTSHHHH
T ss_pred             HHHHHHHHHcc---CHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCchh
Confidence            22444555542   3568999999999999999999999999999988  7774

>1sg4_A 3,2-trans-enoyl-COA isomerase, mitochondrial; crotonase fold; HET: CO8; 1.30A {Homo sapiens} SCOP: c.14.1.3 PDB: 1xx4_A

Probab=99.96  E-value=5.3e-30  Score=237.02  Aligned_cols=152  Identities=19%  Similarity=0.214  Sum_probs=131.4

Q ss_pred             CCCCchHHHHHHhcCEEEEe--cCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcce
Q psy9056           1 MFAEPSLATVALACHYRIVV--KDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQ   78 (359)
Q Consensus         1 ~~a~GgG~~lalacD~ria~--~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~   78 (359)
                      |.|+|||++|+++||||||+  ++  ++|++||+++|++|++|++++|++++|..++++|++||++++++||+++||||+
T Consensus       106 G~a~GgG~~lalacD~~ia~~~~~--a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~llltg~~~~a~eA~~~GLv~~  183 (260)
T 1sg4_A          106 GACPAGGCLVALTCDYRILADNPR--YCIGLNETQLGIIAPFWLKDTLENTIGHRAAERALQLGLLFPPAEALQVGIVDQ  183 (260)
T ss_dssp             EEBCHHHHHHHTTSSEEEEECCTT--CCBSCCGGGGTCCCCHHHHHHHHHHHCHHHHHHHHHHTCCBCHHHHHHHTSSSE
T ss_pred             CeeehHHHHHHHhCCEEEEecCCC--CEEeCchhhhCCCCchhHHHHHHHHhCHHHHHHHHHcCCcCCHHHHHHcCCCCE
Confidence            57999999999999999999  77  999999999999999999999999999999999999999999999999999999


Q ss_pred             ecCCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccccccCCCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHhhCCCCC
Q psy9056          79 LVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYP  158 (359)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (359)
                      ++|+             +++.+.+.+++++++..|+.                                           
T Consensus       184 vv~~-------------~~l~~~a~~~a~~la~~~~~-------------------------------------------  207 (260)
T 1sg4_A          184 VVPE-------------EQVQSTALSAIAQWMAIPDH-------------------------------------------  207 (260)
T ss_dssp             EECG-------------GGHHHHHHHHHHHHHTSCHH-------------------------------------------
T ss_pred             ecCH-------------HHHHHHHHHHHHHHHhCCHH-------------------------------------------
Confidence            9998             88999999999999988762                                           


Q ss_pred             cHHHHHHHHHHhhccChhhHHHHHHHHhhhhhcChhhHHHHHhHhhhhhhhh
Q psy9056         159 APLKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQTECKK  210 (359)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~s~~~~~~~~af~~k~~~~~  210 (359)
                      +...+|+.++.....+++++++.|.+.+..++.|+|++|++++|++||+|++
T Consensus       208 a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~s~d~~eg~~af~ekr~~~~  259 (260)
T 1sg4_A          208 ARQLTKAMMRKATASRLVTQRDADVQNFVSFISKDSIQKSLQMYLERLKEEK  259 (260)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHTSHHHHHHHTC---------
T ss_pred             HHHHHHHHHHHhhhccHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcccC
Confidence            2224666777766677889999999999999999999999999999999876

>2f6q_A Peroxisomal 3,2-trans-enoyl-COA isomerase; peroxisomes, fatty acid metabolism, STR genomics, structural genomics consortium, SGC; 1.95A {Homo sapiens} SCOP: c.14.1.3

Probab=99.96  E-value=9.3e-30  Score=237.75  Aligned_cols=150  Identities=15%  Similarity=0.088  Sum_probs=128.0

Q ss_pred             CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceec
Q psy9056           1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLV   80 (359)
Q Consensus         1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~   80 (359)
                      |.|+|||++|+++||+||++++  ++|++||+++|++|++|++++|++++|..++++|++||++++|+||+++||||+++
T Consensus       130 G~a~GgG~~LalacD~ria~~~--a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~A~~l~ltg~~~~A~eA~~~GLv~~vv  207 (280)
T 2f6q_A          130 GPAVGISVTLLGLFDAVYASDR--ATFHTPFSHLGQSPEGCSSYTFPKIMSPAKATEMLIFGKKLTAGEACAQGLVTEVF  207 (280)
T ss_dssp             SCEETHHHHGGGGCSEEEEETT--CEEECCTGGGTCCCCTTHHHHHHHHHCHHHHHHHHTTCCCEEHHHHHHTTSCSEEE
T ss_pred             CeeehHHHHHHHhCCEEEECCC--cEEECchHhhCCCCcccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHCCCcceEE
Confidence            6899999999999999999998  99999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccccccCCCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHhhCCCCCcH
Q psy9056          81 EPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAP  160 (359)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (359)
                      |+             +++.+.+.+++++++..++.                                           +.
T Consensus       208 ~~-------------~~l~~~a~~~a~~la~~~~~-------------------------------------------a~  231 (280)
T 2f6q_A          208 PD-------------STFQKEVWTRLKAFAKLPPN-------------------------------------------AL  231 (280)
T ss_dssp             CT-------------TTHHHHHHHHHHHHTTSCHH-------------------------------------------HH
T ss_pred             CH-------------HHHHHHHHHHHHHHHhCCHH-------------------------------------------HH
Confidence            98             78999999999999988762                                           22


Q ss_pred             HHHHHHHHHhhccChhhHHHHHHHHhhhhhcChhhHHHHHhHhhhhhh
Q psy9056         161 LKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQTEC  208 (359)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~s~~~~~~~~af~~k~~~  208 (359)
                      ..+|+.++.....+++++++.|.+.+..++.|+|++|++++|++||+|
T Consensus       232 ~~~K~~l~~~~~~~~~~~l~~e~~~~~~~~~s~d~~eg~~af~ekR~p  279 (280)
T 2f6q_A          232 RISKEVIRKREREKLHAVNAEECNVLQGRWLSDECTNAVVNFLSRKSK  279 (280)
T ss_dssp             HHHHHHHHGGGHHHHHHHHHHHHHHHHHHHTSHHHHC-----------
T ss_pred             HHHHHHHHhhhhcCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHccCCC
Confidence            246677777766778999999999999999999999999999999986

>3qmj_A Enoyl-COA hydratase, ECHA8_6; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.20A {Mycobacterium marinum}

Probab=99.96  E-value=3.1e-30  Score=238.03  Aligned_cols=149  Identities=19%  Similarity=0.205  Sum_probs=101.4

Q ss_pred             CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceec
Q psy9056           1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLV   80 (359)
Q Consensus         1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~   80 (359)
                      |+|+|||++|+++||+||++++  ++|++||+++|++|++|++++|++++|..++++|++||++++++||+++||||+++
T Consensus       108 G~a~GgG~~lalacD~~ia~~~--a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~A~~l~ltg~~~~a~eA~~~GLv~~vv  185 (256)
T 3qmj_A          108 GLGVGIGATILGYADLAFMSST--ARLKCPFTSLGVAPEAASSYLLPQLVGRQNAAWLLMSSEWIDAEEALRMGLVWRIC  185 (256)
T ss_dssp             SEEETHHHHGGGGCSEEEEETT--CEEECCGGGC---CCTTHHHHHHHHHHHHHHHHHHHSCCCEEHHHHHHHTSSSEEE
T ss_pred             CeehhHHHHHHHhCCEEEEeCC--CEEECcccccCCCCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHCCCccEEe
Confidence            6799999999999999999998  99999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccccccCCCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHhhCCCCCcH
Q psy9056          81 EPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAP  160 (359)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (359)
                      |+             +++.+.+.+++++|+..|+.                                           +.
T Consensus       186 ~~-------------~~l~~~a~~~a~~la~~~~~-------------------------------------------a~  209 (256)
T 3qmj_A          186 SP-------------EELLPEARRHAEILAAKPIS-------------------------------------------SL  209 (256)
T ss_dssp             CG-------------GGHHHHHHHHHHHHHTSCHH-------------------------------------------HH
T ss_pred             CH-------------hHHHHHHHHHHHHHHhCCHH-------------------------------------------HH
Confidence            98             88999999999999998762                                           23


Q ss_pred             HHHHHHHHHhhccChhhHHHHHHHHhhhhhcChhhHHHHHhHhhhhh
Q psy9056         161 LKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQTE  207 (359)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~s~~~~~~~~af~~k~~  207 (359)
                      ..+|+.++.....+++++++.|.+.+..++.|+|++|++++|++||+
T Consensus       210 ~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~eg~~af~ekr~  256 (256)
T 3qmj_A          210 MAVKHTMVEPNRAQIAAASARENAHFAELMGAQANAAALADFTDRRR  256 (256)
T ss_dssp             HHHHHHHHCC-------------------------------------
T ss_pred             HHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHccCC
Confidence            35777788887888999999999999999999999999999999985

>4eml_A Naphthoate synthase; 1,4-dihydroxy-2-naphthoyl-coenzyme A, lyase; 2.04A {Synechocystis SP}

Probab=99.96  E-value=1.1e-29  Score=236.57  Aligned_cols=155  Identities=16%  Similarity=0.177  Sum_probs=134.8

Q ss_pred             CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceec
Q psy9056           1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLV   80 (359)
Q Consensus         1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~   80 (359)
                      |+|+|||++|+++||+|||+++  ++|++||+++|++|+++++++|++++|..+|++|++||++++|+||+++||||+++
T Consensus       118 G~a~GgG~~lalacD~~ia~~~--a~f~~pe~~~Gl~p~~~g~~~L~r~vG~~~A~~llltg~~i~A~eA~~~GLv~~vv  195 (275)
T 4eml_A          118 GYAIGGGHVLHLVCDLTIAADN--AIFGQTGPKVGSFDGGFGSSYLARIVGQKKAREIWYLCRQYSAQEAERMGMVNTVV  195 (275)
T ss_dssp             SEEETHHHHHHHHSSEEEEETT--CEEECCHHHHTCCCCSTTTHHHHHHHCHHHHHHHHHHCCCEEHHHHHHHTSCSEEE
T ss_pred             CeeehHHHHHHHhCCEEEEcCC--CEEECcccccCCCCCccHHHHHHHHhHHHHHHHHHHhCCCcCHHHHHHcCCccEee
Confidence            6899999999999999999998  99999999999999998999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccccccCCCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHhhCCCCCcH
Q psy9056          81 EPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAP  160 (359)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (359)
                      |+             +++.+.+.+++++|++.|+..                                           .
T Consensus       196 ~~-------------~~l~~~a~~~a~~la~~~~~a-------------------------------------------~  219 (275)
T 4eml_A          196 PV-------------DRLEEEGIQWAKEILSKSPLA-------------------------------------------I  219 (275)
T ss_dssp             CG-------------GGHHHHHHHHHHHHHTSCHHH-------------------------------------------H
T ss_pred             CH-------------HHHHHHHHHHHHHHHhCCHHH-------------------------------------------H
Confidence            98             889999999999999987732                                           2


Q ss_pred             HHHHHHHHHhhccChhhHHHHHHHHhhhhhcChhhHHHHHhHhhhhhhhhcCCC
Q psy9056         161 LKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQTECKKNRLG  214 (359)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~s~~~~~~~~af~~k~~~~~~~~~  214 (359)
                      ..+|++++.... ...+..+.|.+.+..++.|+|++||+.+|++||+|.|..++
T Consensus       220 ~~~K~~l~~~~~-~~~~~~~~~~~~~~~~~~s~d~~eg~~AF~ekR~p~f~~~~  272 (275)
T 4eml_A          220 RCLKAAFNADCD-GQAGLQELAGNATLLYYMTEEGSEGKQAFLEKRPPDFSQYP  272 (275)
T ss_dssp             HHHHHHHHHTTS-HHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTTSCCCCTTCC
T ss_pred             HHHHHHHHhhhc-cchhHHHHHHHHHHHHhcCHHHHHHHHHHHcCCCCCCCCCC
Confidence            245555555432 23344456777888899999999999999999999886543

>3lke_A Enoyl-COA hydratase; nysgrc, target 112 structural genomics, PSI-2, protein structure initiative; 1.70A {Bacillus halodurans}

Probab=99.96  E-value=8.4e-30  Score=236.00  Aligned_cols=152  Identities=18%  Similarity=0.270  Sum_probs=135.2

Q ss_pred             CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceec
Q psy9056           1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLV   80 (359)
Q Consensus         1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~   80 (359)
                      |.|+|||++|+++||||||+++  ++|++||+++|++|++|++++|++++|..++++|++||++++|+||+++||||+++
T Consensus       110 G~a~GgG~~lalacD~ria~~~--a~f~~pe~~~Gl~p~~g~~~~L~~~vG~~~A~~l~ltg~~~~a~eA~~~GLv~~vv  187 (263)
T 3lke_A          110 GYAYGGGFNMMLACDRRIALRR--AKFLENFHKMGISPDLGASYFLPRIIGYEQTMNLLLEGKLFTSEEALRLGLIQEIC  187 (263)
T ss_dssp             SEEETHHHHGGGGSSEEEEETT--CEEECCHHHHTCCCCTTHHHHHHHHHCHHHHHHHHHHCCCEEHHHHHHHTSSSEEE
T ss_pred             CEeeHHHHHHHHHCCEEEEcCC--CEEeCchHhhCCCCCccHHHHHHHHhCHHHHHHHHHhCCCcCHHHHHHcCCCcEec
Confidence            6799999999999999999998  99999999999999999999999999999999999999999999999999999999


Q ss_pred             C-CCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccccccCCCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHhhCCCCCc
Q psy9056          81 E-PLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPA  159 (359)
Q Consensus        81 ~-~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (359)
                      | +             +++.+.+.+++++++..|+.                                           +
T Consensus       188 ~~~-------------~~l~~~a~~~a~~la~~~~~-------------------------------------------a  211 (263)
T 3lke_A          188 ENK-------------QELQERVKNYLKAVSEGYVP-------------------------------------------A  211 (263)
T ss_dssp             SSH-------------HHHHHHHHHHHHHHHTSCHH-------------------------------------------H
T ss_pred             CCh-------------hHHHHHHHHHHHHHHhCCHH-------------------------------------------H
Confidence            9 7             89999999999999998872                                           2


Q ss_pred             HHHHHHHHHHhhccChhhHHHHHHHHhhhhhcChhhHHHHHhHhhhhhhhh
Q psy9056         160 PLKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQTECKK  210 (359)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~s~~~~~~~~af~~k~~~~~  210 (359)
                      ...+|++++.....+++++++.|.+.+..++.|+|++|++++|.+++++.+
T Consensus       212 ~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~d~~e~~~~~~~~~~~~~  262 (263)
T 3lke_A          212 IAATKKLLKGKAAEELKQQLEQETEELVALFKQTEIKKRLEALVEGHHHHH  262 (263)
T ss_dssp             HHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHC--------
T ss_pred             HHHHHHHHHHhhhcCHHHHHHHHHHHHHHHhcCHHHHHHHHhhhccCCCCC
Confidence            335677788877788999999999999999999999999999999998654

>2uzf_A Naphthoate synthase; lyase, menaquinone biosynthesis; HET: CAA; 2.9A {Staphylococcus aureus}

Probab=99.96  E-value=1.6e-29  Score=235.35  Aligned_cols=152  Identities=14%  Similarity=0.181  Sum_probs=136.8

Q ss_pred             CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceec
Q psy9056           1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLV   80 (359)
Q Consensus         1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~   80 (359)
                      |+|+|||++|+++||||||+++  ++|++||+++|++|++|++++|++++|..++++|++||++++|+||+++||||+++
T Consensus       116 G~a~GgG~~lalacD~ria~~~--a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~A~~l~ltg~~~~a~eA~~~GLv~~vv  193 (273)
T 2uzf_A          116 GYAVGGGNVLNVVCDLTIAADN--AIFGQTGPKVGSFDAGYGSGYLARIVGHKKAREIWYLCRQYNAQEALDMGLVNTVV  193 (273)
T ss_dssp             EEEETHHHHHHHHSSEEEEETT--CEEECCGGGTTCCCCSTTTHHHHHHHCHHHHHHHHHTCCCEEHHHHHHHTSSSEEE
T ss_pred             CEEeehhHHHHHhCCEEEEcCC--CEEECchhhhCCCCchhHHHHHHHHhCHHHHHHHHHhCCCCCHHHHHHcCCCcccc
Confidence            5799999999999999999998  99999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccccccCCCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHhhCCCCCcH
Q psy9056          81 EPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAP  160 (359)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (359)
                      |+             +++.+.+.+++++++..++..                                           .
T Consensus       194 ~~-------------~~l~~~a~~~a~~la~~~~~a-------------------------------------------~  217 (273)
T 2uzf_A          194 PL-------------EKVEDETVQWCKEIMKHSPTA-------------------------------------------L  217 (273)
T ss_dssp             CG-------------GGSHHHHHHHHHHHTTSCHHH-------------------------------------------H
T ss_pred             CH-------------HHHHHHHHHHHHHHHhCCHHH-------------------------------------------H
Confidence            98             889999999999999887621                                           2


Q ss_pred             HHHHHHHHHhhccChhhHHHHHH-HHhhhhhcChhhHHHHHhHhhhhhhhhcC
Q psy9056         161 LKILDVVRTGIEKGPSAGYEAEA-EGFSQLAMTPQSKGLMGLFRAQTECKKNR  212 (359)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~e~-~~~~~~~~s~~~~~~~~af~~k~~~~~~~  212 (359)
                      ..+|+.++  ...+++++++.|. +.+..++.|+|++|++++|++||+|+|..
T Consensus       218 ~~~K~~l~--~~~~~~~~l~~e~~~~~~~~~~s~d~~egi~af~ekr~p~f~~  268 (273)
T 2uzf_A          218 RFLKAAMN--ADTDGLAGLQQMAGDATLLYYTTDEAKEGRDAFKEKRDPDFDQ  268 (273)
T ss_dssp             HHHHHHHH--HHHSHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTTSCCCCSS
T ss_pred             HHHHHHHH--ccCCHHHHHHHHHHHHHHHHhcChHHHHHHHHHHhcCCCCCCC
Confidence            24455555  2356788999998 99999999999999999999999988753

>2j5i_A P-hydroxycinnamoyl COA hydratase/lyase; vanillin, aldolase, crotonase, coenzyme-A; 1.8A {Pseudomonas fluorescens} PDB: 2j5i_B 2vss_A* 2j5i_I 2vss_F* 2vsu_A* 2vss_E* 2vsu_F* 2vsu_E* 2vsu_C*

Probab=99.96  E-value=1.6e-29  Score=235.68  Aligned_cols=153  Identities=20%  Similarity=0.167  Sum_probs=121.5

Q ss_pred             CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceec
Q psy9056           1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLV   80 (359)
Q Consensus         1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~   80 (359)
                      |.|+|||++|+++||+|||+++  ++|++||+++|++|++|++++|++++|..++++|++||++++|+||+++||||+++
T Consensus       115 G~a~GgG~~lalacD~ria~~~--a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~A~~l~ltg~~~~A~eA~~~GLv~~vv  192 (276)
T 2j5i_A          115 GWCFGGGFSPLVACDLAICADE--ATFGLSEINWGIPPGNLVSKAMADTVGHRQSLMYIMTGKTFGGQKAAEMGLVNESV  192 (276)
T ss_dssp             SCEEGGGHHHHHHSSEEEEETT--CEEECGGGGGTCCCCTTHHHHHHHHSCHHHHHHHHHHCCEEEHHHHHHHTSSSEEE
T ss_pred             CeeehhHHHHHHhCCEEEEcCC--CEEeCcccccCCCCcchHHHHHHHHhCHHHHHHHHHhCCcccHHHHHHcCCccEee
Confidence            6899999999999999999998  99999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccccccCCCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHhhCCCCCcH
Q psy9056          81 EPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAP  160 (359)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (359)
                      |+             +++.+.+.+++++++..++.                                           +.
T Consensus       193 ~~-------------~~l~~~a~~~a~~la~~~p~-------------------------------------------a~  216 (276)
T 2j5i_A          193 PL-------------AQLREVTIELARNLLEKNPV-------------------------------------------VL  216 (276)
T ss_dssp             CH-------------HHHHHHHHHHHHHHHTSCHH-------------------------------------------HH
T ss_pred             CH-------------HHHHHHHHHHHHHHHhCCHH-------------------------------------------HH
Confidence            98             89999999999999998772                                           22


Q ss_pred             HHHHHHHHHhhccChhhHHHHHHHHhhhh--hcCh-hhHHHHHhHhhhh--hhhhc
Q psy9056         161 LKILDVVRTGIEKGPSAGYEAEAEGFSQL--AMTP-QSKGLMGLFRAQT--ECKKN  211 (359)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~--~~s~-~~~~~~~af~~k~--~~~~~  211 (359)
                      ..+|++++.....+++++++.|.+.+..+  +.|+ |++||+++|++||  +|++.
T Consensus       217 ~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~s~~d~~eg~~AF~ekr~r~p~~~  272 (276)
T 2j5i_A          217 RAAKHGFKRCRELTWEQNEDYLYAKLDQSRLLDTEGGREQGMKQFLDDKSIKPGLQ  272 (276)
T ss_dssp             HHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHC-----------------------
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcccCCCCcc
Confidence            35677788877788999999888877665  6799 9999999999998  55553

>3oc7_A Enoyl-COA hydratase; seattle structural genomics center for infectious disease, S non-pathogenic mycobacterium species, ortholog; 1.50A {Mycobacterium avium} SCOP: c.14.1.0

Probab=99.96  E-value=1.7e-29  Score=234.56  Aligned_cols=150  Identities=15%  Similarity=0.169  Sum_probs=138.3

Q ss_pred             CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceec
Q psy9056           1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLV   80 (359)
Q Consensus         1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~   80 (359)
                      |.|+|||++|+++|||||++++  ++|++||+++|++|++|++++|+ ++|..++++|++||++++++||+++||||++ 
T Consensus       117 G~a~GgG~~lalacD~~ia~~~--a~f~~pe~~~Gl~p~~g~~~~l~-~vG~~~A~~l~ltg~~~~a~eA~~~GLv~~v-  192 (267)
T 3oc7_A          117 GHVRAGGFGLVGACDIAVAGPR--SSFALTEARIGVAPAIISLTLLP-KLSARAAARYYLTGEKFDARRAEEIGLITMA-  192 (267)
T ss_dssp             SEEETTHHHHHHHSSEEEECTT--CEEECCGGGGTCCCTTTHHHHTT-TSCHHHHHHHHHHCCCBCHHHHHHHTSSSEE-
T ss_pred             CeecccchHHHHHCCEEEEcCC--CEEeCcccccCCCcchhHHHHHH-HhCHHHHHHHHHcCCccCHHHHHHCCChhhh-
Confidence            6799999999999999999998  99999999999999999999999 9999999999999999999999999999999 


Q ss_pred             CCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccccccCCCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHhhCCCCCcH
Q psy9056          81 EPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAP  160 (359)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (359)
                       .             +++++.+.+++++|+..++.                                           +.
T Consensus       193 -~-------------~~l~~~a~~~a~~la~~~~~-------------------------------------------a~  215 (267)
T 3oc7_A          193 -A-------------EDLDAAIDQLVTDVGRGSPQ-------------------------------------------GL  215 (267)
T ss_dssp             -C-------------SSHHHHHHHHHHHHHTSCHH-------------------------------------------HH
T ss_pred             -h-------------HHHHHHHHHHHHHHHhCCHH-------------------------------------------HH
Confidence             4             56899999999999998773                                           23


Q ss_pred             HHHHHHHHHhhccChhhHHHHHHHHhhhhhcChhhHHHHHhHhhhhhhhhc
Q psy9056         161 LKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQTECKKN  211 (359)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~s~~~~~~~~af~~k~~~~~~  211 (359)
                      ..+|++++.....+++++++.|.+.+..++.|+|++|++++|++||+|+|.
T Consensus       216 ~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~d~~eg~~af~ekr~p~f~  266 (267)
T 3oc7_A          216 AASKALTTAAVLERFDRDAERLAEESARLFVSDEAREGMLAFLEKRSPNWT  266 (267)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHTCCCTTC
T ss_pred             HHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHcCCCCCCC
Confidence            356677787777889999999999999999999999999999999998874

>3t8b_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily, lyase; 1.65A {Mycobacterium tuberculosis} PDB: 3t8a_A 1rjm_A* 1rjn_A* 1q52_A 1q51_A

Probab=99.96  E-value=5.1e-30  Score=244.45  Aligned_cols=154  Identities=14%  Similarity=0.135  Sum_probs=104.2

Q ss_pred             CCCCchHHHHHHhcCEEEEe-cCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCccee
Q psy9056           1 MFAEPSLATVALACHYRIVV-KDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQL   79 (359)
Q Consensus         1 ~~a~GgG~~lalacD~ria~-~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~   79 (359)
                      |+|+|||++|+++||+|||+ ++  ++|++||+++|++|++|++++|++++|..+|++|++||++++|+||+++||||++
T Consensus       176 G~A~GgG~~LalacD~riAs~~~--A~f~~pe~~lGl~p~~gg~~~L~r~vG~~~A~ellltG~~i~A~eA~~~GLV~~v  253 (334)
T 3t8b_A          176 GWAAGGGHSLHVVCDLTLASREY--ARFKQTDADVGSFDGGYGSAYLARQVGQKFAREIFFLGRTYTAEQMHQMGAVNAV  253 (334)
T ss_dssp             SEEETHHHHHHHHSSEEEEETTT--CEEECCCTTCSSSSCCSCHHHHHHHHHHHHHHHHHHHCCEEEHHHHHHHTSCSEE
T ss_pred             CccccCcchhHhhCCEEEEeCCC--cEEECcccccCCCCcccHHHHHHHHhhHHHHHHHHHhCCcCCHHHHHHCCCCcEe
Confidence            68999999999999999999 88  9999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccccccCCCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHhhCCCCCc
Q psy9056          80 VEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPA  159 (359)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (359)
                      ||+             +++++++.+++++|+..++..                                           
T Consensus       254 v~~-------------~~l~~~a~~~A~~ia~~~p~a-------------------------------------------  277 (334)
T 3t8b_A          254 AEH-------------AELETVGLQWAAEINAKSPQA-------------------------------------------  277 (334)
T ss_dssp             ECG-------------GGHHHHHHHHHHHHHTSCHHH-------------------------------------------
T ss_pred             cCH-------------HHHHHHHHHHHHHHHhCCHHH-------------------------------------------
Confidence            998             889999999999999988732                                           


Q ss_pred             HHHHHHHHHHhhccChhhHHHHHHHHhhhhhcChhhHHHHHhHhhhhhhhhcCC
Q psy9056         160 PLKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQTECKKNRL  213 (359)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~s~~~~~~~~af~~k~~~~~~~~  213 (359)
                      ...+|++++... .++.+.+..|.+.+..++.|+|++||+++|++||+|.|.++
T Consensus       278 ~~~~K~~l~~~~-~~~~~~~~~e~~~~~~~~~s~d~~Eg~~AFleKR~P~f~~~  330 (334)
T 3t8b_A          278 QRMLKFAFNLLD-DGLVGQQLFAGEATRLAYMTDEAVEGRDAFLQKRPPDWSPF  330 (334)
T ss_dssp             HHHHHHHHHHTC-CCC--------------------------------------
T ss_pred             HHHHHHHHHhhh-cchHHHHHHHHHHHHHHhcCHHHHHHHHHHHcCCCCCCCCC
Confidence            224556666553 34555666777888899999999999999999999998654

>3t89_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily, lyase; 1.95A {Escherichia coli} PDB: 3t88_A 4elx_A 4elw_A 4els_A 3h02_A 2iex_A

Probab=99.96  E-value=1.7e-29  Score=236.73  Aligned_cols=156  Identities=13%  Similarity=0.181  Sum_probs=135.2

Q ss_pred             CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceec
Q psy9056           1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLV   80 (359)
Q Consensus         1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~   80 (359)
                      |+|+|||++|+++||+|||+++  ++|++||+++|++|+.+++++|++++|..++++|++||++++|+||+++||||+++
T Consensus       132 G~a~GgG~~lalacD~ria~~~--a~f~~pe~~~Gl~~~~~g~~~L~r~vG~~~A~~llltG~~i~A~eA~~~GLV~~vv  209 (289)
T 3t89_A          132 GYSIGGGHVLHMMCDLTIAADN--AIFGQTGPKVGSFDGGWGASYMARIVGQKKAREIWFLCRQYDAKQALDMGLVNTVV  209 (289)
T ss_dssp             SEEETHHHHHHHHSSEEEEETT--CEEECCHHHHTCCCCSTTTHHHHHHHCHHHHHHHHHHCCCEEHHHHHHHTSSSEEE
T ss_pred             CEeehHHHHHHHhCCEEEEeCC--CEEeccccccCCCCCchHHHHHHHhcCHHHHHHHHHcCCcccHHHHHHCCCceEee
Confidence            6899999999999999999998  99999999999888888899999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccccccCCCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHhhCCCCCcH
Q psy9056          81 EPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAP  160 (359)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (359)
                      |+             +++.+.+.+++++|+..++..                                           .
T Consensus       210 ~~-------------~~l~~~a~~~A~~la~~~~~a-------------------------------------------~  233 (289)
T 3t89_A          210 PL-------------ADLEKETVRWCREMLQNSPMA-------------------------------------------L  233 (289)
T ss_dssp             CG-------------GGHHHHHHHHHHHHHTSCHHH-------------------------------------------H
T ss_pred             CH-------------HHHHHHHHHHHHHHHcCCHHH-------------------------------------------H
Confidence            98             889999999999999987732                                           2


Q ss_pred             HHHHHHHHHhhccChhhHHHHHHHHhhhhhcChhhHHHHHhHhhhhhhhhcCCCC
Q psy9056         161 LKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQTECKKNRLGK  215 (359)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~s~~~~~~~~af~~k~~~~~~~~~~  215 (359)
                      ..+|++++.... ...+..+.|.+.+..++.|+|++||+++|++||+|.|.+.+.
T Consensus       234 ~~~K~~l~~~~~-~~~~~~~~e~~~~~~~~~s~d~~Eg~~AF~ekR~P~f~~~~~  287 (289)
T 3t89_A          234 RCLKAALNADCD-GQAGLQELAGNATMLFYMTEEGQEGRNAFNQKRQPDFSKFKR  287 (289)
T ss_dssp             HHHHHHHHHTTS-HHHHHHHHHHHHHHHHTTSSTTTHHHHHHHTTSCCCCTTSCC
T ss_pred             HHHHHHHHhhcc-cchHHHHHHHHHHHHHhcCHHHHHHHHHHhcCCCCCCCCCCC
Confidence            245556665433 233444567777888999999999999999999999865543

>1hzd_A AUH, AU-binding protein/enoyl-COA hydratase; RNA-binding protein,enoyl-COA hydratase, riken structural genomics/proteomics initiative, RSGI; 2.20A {Homo sapiens} SCOP: c.14.1.3 PDB: 2zqq_A 2zqr_A

Probab=99.96  E-value=2.2e-29  Score=234.28  Aligned_cols=157  Identities=22%  Similarity=0.317  Sum_probs=138.4

Q ss_pred             CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceec
Q psy9056           1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLV   80 (359)
Q Consensus         1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~   80 (359)
                      |+|+|||++|+++||||||+++  ++|++||+++|++|++|++++|++++|..++++|++||++++++||+++||||+++
T Consensus       114 G~a~GgG~~lalacD~ria~~~--a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~A~~l~ltg~~~~a~eA~~~GLv~~vv  191 (272)
T 1hzd_A          114 GLALGGGLELALACDIRVAASS--AKMGLVETKLAIIPGGGGTQRLPRAIGMSLAKELIFSARVLDGKEAKAVGLISHVL  191 (272)
T ss_dssp             EEEETHHHHHHHHSSEEEEETT--CEEECCGGGGTCCCCSSHHHHHHHHHCHHHHHHHHHHTCEEEHHHHHHHTSCSEEE
T ss_pred             ceEEecHHHHHHhCCEEEEcCC--CEEeCchhccCCCCCchHHHHHHHHhCHHHHHHHHHcCCcCCHHHHHHCCCcceec
Confidence            5799999999999999999998  99999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccccccCCCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHhhCCCCCcH
Q psy9056          81 EPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAP  160 (359)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (359)
                      |+.         ++.+.+.+.+.+++++++..++.                                           +.
T Consensus       192 ~~~---------~l~~~~~~~a~~~a~~la~~~p~-------------------------------------------a~  219 (272)
T 1hzd_A          192 EQN---------QEGDAAYRKALDLAREFLPQGPV-------------------------------------------AM  219 (272)
T ss_dssp             CCC---------TTSCHHHHHHHHHHHTTTTSCHH-------------------------------------------HH
T ss_pred             Chh---------hhhHHHHHHHHHHHHHHHhCCHH-------------------------------------------HH
Confidence            871         11123556778888888876652                                           22


Q ss_pred             HHHHHHHHHhhccChhhHHHHHHHHhhhhhcChhhHHHHHhHhhhhhhhhc
Q psy9056         161 LKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQTECKKN  211 (359)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~s~~~~~~~~af~~k~~~~~~  211 (359)
                      ..+|++++.+...+++++++.|.+.+..++.|+|++|++++|++||+|+|.
T Consensus       220 ~~~K~~l~~~~~~~~~~~l~~e~~~~~~~~~s~d~~egi~af~ekr~p~~~  270 (272)
T 1hzd_A          220 RVAKLAINQGMEVDLVTGLAIEEACYAQTIPTKDRLEGLLAFKEKRPPRYK  270 (272)
T ss_dssp             HHHHHHHHHHHTSCHHHHHHHHHHHHHTTTTCHHHHHHHHHHTTTSCCCCC
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHhcCCCCCCC
Confidence            356777888888889999999999999999999999999999999998774

>3qk8_A Enoyl-COA hydratase ECHA15; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 1.60A {Mycobacterium marinum M} SCOP: c.14.1.0 PDB: 3q1t_A

Probab=99.96  E-value=2e-29  Score=234.48  Aligned_cols=149  Identities=17%  Similarity=0.108  Sum_probs=128.7

Q ss_pred             CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceec
Q psy9056           1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLV   80 (359)
Q Consensus         1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~   80 (359)
                      |.|+|||++|+++||||||+++  ++|++||+++|++|++|++++|++++|..++++|++||++++|+||+++||||+++
T Consensus       116 G~a~GgG~~lalacD~ria~~~--a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~A~~l~ltg~~~~A~eA~~~GLv~~vv  193 (272)
T 3qk8_A          116 GPAVGAGLVVALLADISVASAT--AKIIDGHTKLGVAAGDHAAICWPLLVGMAKAKYYLLTCETLSGEEAERIGLVSTCV  193 (272)
T ss_dssp             SEEEHHHHHHHHHSSEEEEETT--CEEECCHHHHTSCSCSSHHHHTHHHHCHHHHHHHHHHCCCEEHHHHHHHTSSSEEE
T ss_pred             CeeehHHHHHHHhCCEEEEcCC--CEEECchhccCCCCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHCCCCcEee
Confidence            6799999999999999999998  99999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccccccCCCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHhhCCCCCcH
Q psy9056          81 EPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAP  160 (359)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (359)
                      |+             +++.+.+.+++++|+..++...                                           
T Consensus       194 ~~-------------~~l~~~a~~~a~~la~~~~~a~-------------------------------------------  217 (272)
T 3qk8_A          194 DD-------------DEVLPTATRLAENLAQGAQNAI-------------------------------------------  217 (272)
T ss_dssp             CG-------------GGHHHHHHHHHHHHHTSCHHHH-------------------------------------------
T ss_pred             CH-------------hHHHHHHHHHHHHHHcCCHHHH-------------------------------------------
Confidence            98             8899999999999999877322                                           


Q ss_pred             HHHHHHHHHhhc---cChhhHHHHHHHHhhhhhcChhhHHHHHhHhhhhhhhhc
Q psy9056         161 LKILDVVRTGIE---KGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQTECKKN  211 (359)
Q Consensus       161 ~~~~~~~~~~~~---~~~~~~~~~e~~~~~~~~~s~~~~~~~~af~~k~~~~~~  211 (359)
                      ..+|++++....   ..+++.++.|    ..++.|+|++||+++|++||+|.|.
T Consensus       218 ~~~K~~l~~~~~~~~~~~~~~~~~e----~~~~~s~d~~eg~~Af~ekR~p~f~  267 (272)
T 3qk8_A          218 RWTKRSLNHWYRMFGPTFETSLGLE----FLGFTGPDVQEGLAAHRQKRPARFT  267 (272)
T ss_dssp             HHHHHHHHHHHHHTHHHHHHHHHHH----HHHTTSSHHHHHHHHHHTTSCCCC-
T ss_pred             HHHHHHHHHHHhhcchhHHHHHHHH----HHHhCCHHHHHHHHHHHcCCCCCCC
Confidence            234445544332   3344444444    4778999999999999999998885

>3hp0_A Putative polyketide biosynthesis enoyl-COA hydratase homolog PKSH; polyketide synthase, enoyl COA hydratase,isomerase; 2.32A {Bacillus subtilis}

Probab=99.96  E-value=4.7e-29  Score=231.34  Aligned_cols=152  Identities=13%  Similarity=0.068  Sum_probs=127.0

Q ss_pred             CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceec
Q psy9056           1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLV   80 (359)
Q Consensus         1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~   80 (359)
                      |.|+|||++|+++||+||++++  ++|++||+++|++|++| +++|++++|..+|++|++||++++|+||+++||||+++
T Consensus       109 G~a~GgG~~lalacD~ria~~~--a~f~~pe~~~Gl~p~~g-~~~l~r~vG~~~A~ellltg~~i~A~eA~~~GLV~~vv  185 (267)
T 3hp0_A          109 GKVNAGGLGFVSATDIAIADQT--ASFSLSELLFGLYPACV-LPFLIRRIGRQKAHYMTLMTKPISVQEASEWGLIDAFD  185 (267)
T ss_dssp             SEEETTHHHHHHHSSEEEECTT--CEEECCGGGGTCCCTTT-HHHHHHHHCHHHHHHHHHHCCCBCHHHHHHHTSSSCBC
T ss_pred             CEEeehHHHHHHhCCEEEEcCC--CEEECchhccCcCchhH-HHHHHHHhCHHHHHHHHHcCCCCCHHHHHHCCCcceec
Confidence            6799999999999999999998  99999999999999885 77899999999999999999999999999999999999


Q ss_pred             CCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccccccCCCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHhhCCCCCcH
Q psy9056          81 EPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAP  160 (359)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (359)
                      |+.            +   ..+.+++++++..|+.                                           +.
T Consensus       186 ~~~------------~---~~~~~~a~~la~~~p~-------------------------------------------a~  207 (267)
T 3hp0_A          186 AES------------D---VLLRKHLLRLRRLNKK-------------------------------------------GI  207 (267)
T ss_dssp             SCT------------T---HHHHHHHHHHTTSCHH-------------------------------------------HH
T ss_pred             CCH------------H---HHHHHHHHHHHhCCHH-------------------------------------------HH
Confidence            861            2   2356788999988762                                           22


Q ss_pred             HHHHHHHHHhhccChhhHHHHHHHHhhhhhcChhhHHHHHhHhhhhhhhhcCCC
Q psy9056         161 LKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQTECKKNRLG  214 (359)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~s~~~~~~~~af~~k~~~~~~~~~  214 (359)
                      ..+|++++... ..+++.++.|.+.+..++.|+|++||+++|++||+|+|.+.+
T Consensus       208 ~~~K~~l~~~~-~~~~~~~~~e~~~~~~~~~s~d~~Eg~~AF~ekr~P~~~~~~  260 (267)
T 3hp0_A          208 AHYKQFMSSLD-HQVSRAKATALTANQDMFSDPQNQMGIIRYVETGQFPWEDQE  260 (267)
T ss_dssp             HHHHHHHHHHC-CHHHHHHHHHHHHHHHHTTSTTHHHHHHHHTTSCCC------
T ss_pred             HHHHHHHHhcc-cchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCCC
Confidence            34556666543 346778888999999999999999999999999999997654

>2a7k_A CARB; crotonase, antibiotic, beta-lactam, biosynthetic protein; 2.24A {Pectobacterium carotovorum} SCOP: c.14.1.3 PDB: 2a81_A*

Probab=99.96  E-value=2.6e-29  Score=231.12  Aligned_cols=148  Identities=16%  Similarity=0.135  Sum_probs=117.9

Q ss_pred             CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceec
Q psy9056           1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLV   80 (359)
Q Consensus         1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~   80 (359)
                      |.|+|||++|+++||||||+++  ++|++||+++|++|++|++ +|++++|..++++|++||++++++||+++||||+++
T Consensus       103 G~a~GgG~~lalacD~ria~~~--a~f~~pe~~~Gl~p~~g~~-~l~~~vG~~~a~~l~ltg~~~~a~eA~~~GLv~~vv  179 (250)
T 2a7k_A          103 GYAIGMGFQFALMFDQRLMAST--ANFVMPELKHGIGCSVGAA-ILGFTHGFSTMQEIIYQCQSLDAPRCVDYRLVNQVV  179 (250)
T ss_dssp             SEEETHHHHHHTTSSEEEEETT--CEEECCGGGGTCCCHHHHH-HHHHHHCHHHHHHHHHHCCCBCHHHHHHHTCCSEEE
T ss_pred             CeEeHHHHHHHHhCCEEEEcCC--CEEeCcccccCCCCCcHHH-HHHHHhHHHHHHHHHHcCCcccHHHHHHcCCcceec
Confidence            6799999999999999999998  9999999999999999999 999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccccccCCCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHhhCCCCCcH
Q psy9056          81 EPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAP  160 (359)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (359)
                      |+             +++.+.+.+++++++..|+.                                           +.
T Consensus       180 ~~-------------~~l~~~a~~~a~~la~~~~~-------------------------------------------a~  203 (250)
T 2a7k_A          180 ES-------------SALLDAAITQAHVMASYPAS-------------------------------------------AF  203 (250)
T ss_dssp             CH-------------HHHHHHHHHHHHHHHTSCHH-------------------------------------------HH
T ss_pred             CH-------------HHHHHHHHHHHHHHHcCCHH-------------------------------------------HH
Confidence            98             89999999999999988762                                           22


Q ss_pred             HHHHHHHHHhhccChhhHHHHHHHHhhhhhcChhhHHHHHhHhhhhh
Q psy9056         161 LKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQTE  207 (359)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~s~~~~~~~~af~~k~~  207 (359)
                      ..+|+.++.....+++++++.|.+.+..++.|+|++|++++|++||+
T Consensus       204 ~~~K~~l~~~~~~~~~~~l~~e~~~~~~~~~s~d~~eg~~af~ekr~  250 (250)
T 2a7k_A          204 INTKRAVNKPFIHLLEQTRDASKAVHKAAFQARDAQGHFKNVLGKKY  250 (250)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHCC--------------------
T ss_pred             HHHHHHHHHhhhcCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCC
Confidence            35667777777778899999999999999999999999999999974

>3pe8_A Enoyl-COA hydratase; emerald biostructures, structural genomics, seattle structur genomics center for infectious disease, ssgcid, lyase; 1.60A {Mycobacterium smegmatis} PDB: 3p85_A* 3qyr_A

Probab=99.96  E-value=3.2e-29  Score=231.06  Aligned_cols=152  Identities=22%  Similarity=0.204  Sum_probs=121.0

Q ss_pred             CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceec
Q psy9056           1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLV   80 (359)
Q Consensus         1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~   80 (359)
                      |.|+|||++|+++|||||++++  ++|++||+++|++|++|++++|++++|..++++|++||++++++||+++||||+++
T Consensus       101 G~a~GgG~~lalacD~~ia~~~--a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~A~~l~ltg~~~~a~eA~~~GLv~~vv  178 (256)
T 3pe8_A          101 GAAVTGGLELALYCDILIASEN--AKFADTHARVGLMPTWGLSVRLPQKVGVGLARRMSLTGDYLSAQDALRAGLVTEVV  178 (256)
T ss_dssp             SEEETHHHHHHHHSSEEEEETT--CEEECCHHHHTCCCCSSHHHHHHHHHCHHHHHHHHHHCCCEEHHHHHHHTSCSCEE
T ss_pred             CeeechHHHHHHhCCEEEEcCC--CEEECchhhhCCCCcccHHHHHHHhcCHHHHHHHHHcCCCCCHHHHHHCCCCeEEe
Confidence            6799999999999999999998  99999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccccccCCCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHhhCCCCCcH
Q psy9056          81 EPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAP  160 (359)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (359)
                      |+             +++.+.+.+++++++..|+.                                           +.
T Consensus       179 ~~-------------~~l~~~a~~~a~~la~~~~~-------------------------------------------a~  202 (256)
T 3pe8_A          179 AH-------------DDLLTAARRVAASIVGNNQK-------------------------------------------AV  202 (256)
T ss_dssp             CG-------------GGHHHHHHHHHHHHHTSCHH-------------------------------------------HH
T ss_pred             CH-------------hHHHHHHHHHHHHHHcCCHH-------------------------------------------HH
Confidence            98             88999999999999998772                                           23


Q ss_pred             HHHHHHHHHhhccChhhHHHHHHHHhhhh---hcChhhHHHHHhHhhhhhhhh
Q psy9056         161 LKILDVVRTGIEKGPSAGYEAEAEGFSQL---AMTPQSKGLMGLFRAQTECKK  210 (359)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~---~~s~~~~~~~~af~~k~~~~~  210 (359)
                      ..+|+.++.....+++++++.|.+.+..+   ..++|++|++.+|++|++|.|
T Consensus       203 ~~~K~~~~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~e~~~aflek~k~~~  255 (256)
T 3pe8_A          203 RALLDSYHRIDALQTGGALWAEAEAARQWMRSTSGDDIAASRASVIERGRSQV  255 (256)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------------------
T ss_pred             HHHHHHHHhhhcCCHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHhccCccC
Confidence            35677778888888999999999986654   677788999999999999887

>3h0u_A Putative enoyl-COA hydratase; structural genomics, isomerase, PSI-2, protein structure initiative; 1.50A {Streptomyces avermitilis}

Probab=99.95  E-value=1.6e-28  Score=230.14  Aligned_cols=146  Identities=25%  Similarity=0.293  Sum_probs=136.1

Q ss_pred             CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceec
Q psy9056           1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLV   80 (359)
Q Consensus         1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~   80 (359)
                      |.|+|||++|+++||+|||+++ +++|++||+++|++|++|++++|++++|..++++|++||++++|+||+++||||+++
T Consensus       112 G~a~GgG~~LalacD~ria~~~-~a~f~~pe~~lGl~p~~g~~~~L~r~vG~~~A~ellltG~~i~A~eA~~~GLV~~vv  190 (289)
T 3h0u_A          112 GRARGAGSEFLLACDMRFASRE-NAILGQPEVGIGAPPGAGAIQHLTRLLGRGRALEAVLTSSDFDADLAERYGWVNRAV  190 (289)
T ss_dssp             SEEETHHHHHHHHSSEEEEETT-TCEEECTHHHHTSCCCSSHHHHHHHHHCHHHHHHHHHHCCCEEHHHHHHHTSSSEEE
T ss_pred             CEeehhhHHHHHhCCEEEEeCC-CcEEeCchhhcCCCCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHCCCccEec
Confidence            6799999999999999999974 499999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccccccCCCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHhhCCCCCcH
Q psy9056          81 EPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAP  160 (359)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (359)
                      |+             +++.+.+.+++++|+..|+.                                           +.
T Consensus       191 ~~-------------~~l~~~a~~lA~~la~~~p~-------------------------------------------a~  214 (289)
T 3h0u_A          191 PD-------------AELDEFVAGIAARMSGFPRD-------------------------------------------AL  214 (289)
T ss_dssp             CH-------------HHHHHHHHHHHHHHHTSCHH-------------------------------------------HH
T ss_pred             CH-------------HHHHHHHHHHHHHHHhCCHH-------------------------------------------HH
Confidence            98             89999999999999998772                                           23


Q ss_pred             HHHHHHHHHhhccChhhHHHHHHHHhhhhhcChhhHHHHHhHhh
Q psy9056         161 LKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRA  204 (359)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~s~~~~~~~~af~~  204 (359)
                      ..+|+.++.... +++++++.|.+.+..++.|+|++||+++|++
T Consensus       215 ~~~K~~l~~~~~-~l~~~l~~e~~~~~~~~~s~d~~egi~AFle  257 (289)
T 3h0u_A          215 IAAKSAINAISL-PAPAEVRADAALFQQLVRGEKVQQRTAELFK  257 (289)
T ss_dssp             HHHHHHHHHHHS-CCHHHHHHHHHHHHHHTTSHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhcc-cHHHHHHHHHHHHHHHhCCHHHHHHHHHHhC
Confidence            356777787777 8999999999999999999999999999999

>3lao_A Enoyl-COA hydratase/isomerase; alpha-beta sandwich, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.40A {Pseudomonas aeruginosa}

Probab=99.95  E-value=4.3e-29  Score=230.66  Aligned_cols=145  Identities=21%  Similarity=0.248  Sum_probs=106.0

Q ss_pred             CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceec
Q psy9056           1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLV   80 (359)
Q Consensus         1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~   80 (359)
                      |.|+|||++|+++||||||+++  ++|++||+++|++|++|++++|++++|..++++|++||++++|+||+++||||+++
T Consensus       114 G~a~GgG~~lalacD~~ia~~~--a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~A~~l~ltg~~~~a~eA~~~Glv~~vv  191 (258)
T 3lao_A          114 GTCWTAGIELMLNADIAVAARG--TRFAHLEVLRGIPPLGGSTVRFPRAAGWTDAMRYILTGDEFDADEALRMRLLTEVV  191 (258)
T ss_dssp             SEEETHHHHHHHTSSEEEEETT--CEEECGGGGTCCCSSCCCCSHHHHHHCHHHHHHHHTTCCCEEHHHHHHTTSCSEEE
T ss_pred             CEeEhHHHHHHHhCCEEEEcCC--CEEeCcccccCCCCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHcCCCcEee
Confidence            6799999999999999999998  99999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccccccCCCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHhhCCCCCcH
Q psy9056          81 EPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAP  160 (359)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (359)
                      |+             +++.+.+.+++++|+..|+.                                           +.
T Consensus       192 ~~-------------~~l~~~a~~~a~~la~~~~~-------------------------------------------a~  215 (258)
T 3lao_A          192 EP-------------GEELARALEYAERIARAAPL-------------------------------------------AV  215 (258)
T ss_dssp             CT-------------TCHHHHHHHHHHHHHHSCHH-------------------------------------------HH
T ss_pred             Ch-------------hHHHHHHHHHHHHHHhCCHH-------------------------------------------HH
Confidence            98             78999999999999998762                                           23


Q ss_pred             HHHHHHHHHhhccChhhHHHHHHHHhhhhhcChhhHHHHHhHh
Q psy9056         161 LKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFR  203 (359)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~s~~~~~~~~af~  203 (359)
                      ..+|++++.....+++++++.|.+.+..++.|+|++||+++|+
T Consensus       216 ~~~K~~l~~~~~~~~~~~l~~e~~~~~~~~~s~d~~eg~~AF~  258 (258)
T 3lao_A          216 RAALQSAFQGRDEGDDAALSRVNESLAALIGSEDVREGVLAMV  258 (258)
T ss_dssp             HHHHHHHHHHTC-------------------------------
T ss_pred             HHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHhhC
Confidence            3577888888888999999999999999999999999999995

>3rrv_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.45A {Mycobacterium avium subsp}

Probab=99.95  E-value=1.6e-28  Score=228.79  Aligned_cols=146  Identities=17%  Similarity=0.178  Sum_probs=134.7

Q ss_pred             CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceec
Q psy9056           1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLV   80 (359)
Q Consensus         1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~   80 (359)
                      |.|+|||++|+++|||||++++  ++|++||+++|++|++|++++|++++|..++++|++||++++|+||+++||||+++
T Consensus       131 G~a~GgG~~LalacD~ria~~~--a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~A~ellltG~~i~A~eA~~~GLv~~vv  208 (276)
T 3rrv_A          131 GPAVGLGCSLVALSDIVYIAEN--AYLADPHVQVGLVAADGGPLTWPLHISLLLAKEYALTGTRISAQRAVELGLANHVA  208 (276)
T ss_dssp             SCEETHHHHHHHTSSEEEEETT--CEEECCHHHHTCCCCSSHHHHGGGTSCHHHHHHHHHHCCCEEHHHHHHHTSCSEEE
T ss_pred             ceeeHHHHHHHHHCCEEEEeCC--CEEECchhccCcCCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHcCCHHHHH
Confidence            6899999999999999999998  99999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccccccCCCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHhhCCCCCcH
Q psy9056          81 EPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAP  160 (359)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (359)
                       +              ++.+.+.+++++|+..|+.                                           +.
T Consensus       209 -~--------------~l~~~a~~~A~~la~~~~~-------------------------------------------a~  230 (276)
T 3rrv_A          209 -D--------------DPVAEAIACAKKILELPQQ-------------------------------------------AV  230 (276)
T ss_dssp             -S--------------SHHHHHHHHHHHHHHSCHH-------------------------------------------HH
T ss_pred             -H--------------HHHHHHHHHHHHHHcCCHH-------------------------------------------HH
Confidence             5              2788999999999998873                                           22


Q ss_pred             HHHHHHHHHhhccChhhHHHHHHHHhhhhhcChhhHHHHHhHhhhh
Q psy9056         161 LKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQT  206 (359)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~s~~~~~~~~af~~k~  206 (359)
                      ..+|++++.....+++++++.|.+.+..++.|+|++||+++|++||
T Consensus       231 ~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~eg~~AF~ekR  276 (276)
T 3rrv_A          231 ESTKRVLNIHLERAVLASLDYALSAESQSFVTEDFRSIVTKLADKN  276 (276)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHhhhcCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcCC
Confidence            3566777877777899999999999999999999999999999987

>3he2_A Enoyl-COA hydratase ECHA6; fatty acid metabolism, lipid metabolism, lyase, structural genomics; HET: PGE; 2.30A {Mycobacterium tuberculosis}

Probab=99.95  E-value=8.2e-29  Score=229.05  Aligned_cols=147  Identities=18%  Similarity=0.113  Sum_probs=131.5

Q ss_pred             CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceec
Q psy9056           1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLV   80 (359)
Q Consensus         1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~   80 (359)
                      |.|+|||++|+++||+|||+++  ++|++||+++|++|++|++++|++++|..++++|++||++++|+||+++||||+++
T Consensus       116 G~a~GgG~~lalacD~ria~~~--a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~A~~llltG~~i~A~eA~~~GLV~~v~  193 (264)
T 3he2_A          116 GPAIGAGLQLAMQCDLRVVAPD--AFFQFPTSKYGLALDNWSIRRLSSLVGHGRARAMLLSAEKLTAEIALHTGMANRIG  193 (264)
T ss_dssp             SCEETHHHHHHHHSSEEEECTT--CEEECTHHHHTCCCCHHHHHHHHHHHCHHHHHHHHHHCCCEEHHHHHHHTSCSEEC
T ss_pred             CcEEcchhHHHHhCCEEEEcCC--CEEECcccccCcCCcchHHHHHHHHhCHHHHHHHHHcCCCccHHHHHHCCCeEEEe
Confidence            6899999999999999999998  99999999999999999999999999999999999999999999999999999998


Q ss_pred             CCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccccccCCCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHhhCCCCCcH
Q psy9056          81 EPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAP  160 (359)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (359)
                      +.                 +.+.+++++|+..++.                                           +.
T Consensus       194 ~~-----------------~~a~~~A~~la~~~p~-------------------------------------------a~  213 (264)
T 3he2_A          194 TL-----------------ADAQAWAAEIARLAPL-------------------------------------------AI  213 (264)
T ss_dssp             CH-----------------HHHHHHHHHHHTSCHH-------------------------------------------HH
T ss_pred             cH-----------------HHHHHHHHHHHcCCHH-------------------------------------------HH
Confidence            64                 3567899999988762                                           22


Q ss_pred             HHHHHHHHHhhccChhhHHHHHHHHhhhhhcChhhHHHHHhHhhhhhhhhc
Q psy9056         161 LKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQTECKKN  211 (359)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~s~~~~~~~~af~~k~~~~~~  211 (359)
                      ..+|++++..  .++++.++.|.+.+..++.|+|++||+.+|++||+|.|.
T Consensus       214 ~~~K~~l~~~--~~~~~~~~~e~~~~~~~~~s~d~~Eg~~AF~ekR~P~f~  262 (264)
T 3he2_A          214 QHAKRVLNDD--GAIEEAWPAHKELFDKAWGSQDVIEAQVARMEKRPPKFQ  262 (264)
T ss_dssp             HHHHHHHHTS--SCSCCCCHHHHHHHHHHHTSHHHHHHHHHHHTTSCCCCC
T ss_pred             HHHHHHHHcc--CCHHHHHHHHHHHHHHHhCCHHHHHHHHHHhcCCCCCCC
Confidence            3456666665  357788889999999999999999999999999999874

>3bpt_A 3-hydroxyisobutyryl-COA hydrolase; coenzyme A, beta-hydroxyisobutyryl acid, querceti structural genomics consortium, SGC; HET: QUE; 1.50A {Homo sapiens}

Probab=99.95  E-value=2.1e-28  Score=236.44  Aligned_cols=195  Identities=16%  Similarity=0.113  Sum_probs=142.2

Q ss_pred             CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceec
Q psy9056           1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLV   80 (359)
Q Consensus         1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~   80 (359)
                      |+|+|||++|+++||||||+++  ++|++||+++|++|++|++++|++++|. ++++|++||++++|+||+++||||+++
T Consensus       111 G~a~GgG~~LalacD~ria~~~--a~f~~pe~~~Gl~p~~g~~~~L~r~~g~-~a~~l~ltg~~i~A~eA~~~GLv~~vv  187 (363)
T 3bpt_A          111 GITMGGGVGLSVHGQFRVATEK--CLFAMPETAIGLFPDVGGGYFLPRLQGK-LGYFLALTGFRLKGRDVYRAGIATHFV  187 (363)
T ss_dssp             SEEETHHHHTTTTSSEEEECTT--CEEECCGGGTTSCCCTTHHHHHHHSSTT-HHHHHHHHCCCEETHHHHHTTSCSEEC
T ss_pred             CEEehHHHHHHHhCCEEEEcCC--eEEeCCccccCCCCCchHHHHHHHhhHH-HHHHHHHcCCCCCHHHHHHCCCcceec
Confidence            6899999999999999999998  9999999999999999999999999997 999999999999999999999999999


Q ss_pred             CCCCCCCCCcchhhHHHHHHHHHHHHH--------------HHhcCccccccCCCCCC---chhhhhhh------hhhhh
Q psy9056          81 EPLGPGLNHPEERTMEYLEEVAVNTAS--------------QLASGKLKINRTKPMIP---DKVLDVAL------KFEFV  137 (359)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~--------------~l~~~~~~~~~~k~~~~---~~~~~~~~------~~~~~  137 (359)
                      |+             +++.+.+..+++              .+.............+.   ..+...+.      .+...
T Consensus       188 ~~-------------~~l~~~~~~l~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~f~~~~~~ei~~al  254 (363)
T 3bpt_A          188 DS-------------EKLAMLEEDLLALKSPSKENIASVLENYHTESKIDRDKSFILEEHMDKINSCFSANTVEEIIENL  254 (363)
T ss_dssp             CG-------------GGHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCCTTTTCCCTTGGGHHHHHHHTTSSSHHHHHHHH
T ss_pred             CH-------------HHHHHHHHHHHhcccCCHHHHHHHHHHHHhhhcccCCCchhhHHHHHHHHHHhCCCCHHHHHHHH
Confidence            98             556544333321              11110000000000000   00000000      00000


Q ss_pred             hhHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHhhccChhhHHHHHHHHhhhhhcChhhHHHHHhHh-hh-hhhhhc
Q psy9056         138 RNQIFGKAKEKVMKMSGGLYPAPLKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFR-AQ-TECKKN  211 (359)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~s~~~~~~~~af~-~k-~~~~~~  211 (359)
                      ......+..+...+....++.+...+|++++.+...+++++++.|.+.+..++.|+|++||+++|+ +| |+|+|.
T Consensus       255 ~~~~~~~a~~~a~~la~~sP~al~~~k~~l~~~~~~~l~~~l~~E~~~~~~~~~s~D~~EGv~Afl~eK~r~P~~~  330 (363)
T 3bpt_A          255 QQDGSSFALEQLKVINKMSPTSLKITLRQLMEGSSKTLQEVLTMEYRLSQACMRGHDFHEGVRAVLIDKDQSPKWK  330 (363)
T ss_dssp             HHHCCHHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHTSSHHHHHHHHHTTSCCCCCCCS
T ss_pred             hccChHHHHHHHHHHHhCCchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCccHHhhhhheeeCCCCCCCCC
Confidence            000012333455556666677788899999999889999999999999999999999999999999 78 777664

>3ju1_A Enoyl-COA hydratase/isomerase family protein; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; HET: MSE; 2.30A {Shewanella oneidensis}

Probab=99.95  E-value=2.3e-28  Score=238.82  Aligned_cols=194  Identities=12%  Similarity=0.069  Sum_probs=146.0

Q ss_pred             CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceec
Q psy9056           1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLV   80 (359)
Q Consensus         1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~   80 (359)
                      |+|+|||++|+++||||||+++  ++|++||+++|++|++|++++|++++| .++++|++||++++|+||+++||||+++
T Consensus       151 G~a~GgG~~LalacD~ria~~~--a~f~~pe~~lGl~P~~G~t~~L~rl~g-~~A~~l~ltG~~i~A~eA~~~GLv~~vv  227 (407)
T 3ju1_A          151 GIVMGGGLGLMAGASHKVVTET--SRIAMPEVTIGLYPDVGGSYFLNRMPG-KMGLFLGLTAYHMNAADACYVGLADHYL  227 (407)
T ss_dssp             SEEETHHHHHHHHCSEEEECTT--CEEECGGGGGTCCSCTTHHHHTTTSST-THHHHHHHHCCCBCHHHHHHHTSCSEEC
T ss_pred             CccccCcchHHhcCCEEEEcCC--CEEeChHhhcCCCCCchHHHHHhhhhH-HHHHHHHHcCCcCcHHHHHHCCCccEEc
Confidence            6899999999999999999998  999999999999999999999999999 9999999999999999999999999999


Q ss_pred             CCCCCCCCCcchhhHHHHHH---H----------------HHHHHHHHhcCccccccCCCCC--Cchhhhhhhhhhhhhh
Q psy9056          81 EPLGPGLNHPEERTMEYLEE---V----------------AVNTASQLASGKLKINRTKPMI--PDKVLDVALKFEFVRN  139 (359)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~---~----------------~~~~~~~l~~~~~~~~~~k~~~--~~~~~~~~~~~~~~~~  139 (359)
                      |+             +++.+   +                +.+++.++............+.  ...|+..+.  .....
T Consensus       228 ~~-------------~~l~~~~~~L~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~l~~~~~~I~~~f~--~sv~~  292 (407)
T 3ju1_A          228 NR-------------DDKELMFDAMATLDWSDSPALNHQRLDTMINELSNQVDIPKGDSVLAESQEMIDRLMA--GSLTD  292 (407)
T ss_dssp             CG-------------GGHHHHHHHHHSSCCCSCHHHHHHHHHHHHHHHHTTCSSCCCCCHHHHTHHHHHHHTC--SCHHH
T ss_pred             CH-------------HHHHHHHHHHhcccccccccchhHHHHHHHHHhhhhccccCCchhHHHHHHHHHHHhc--CCHHH
Confidence            98             55554   2                3344444432211100000000  011111111  00000


Q ss_pred             HH---------HHHHHHHHHHhhCCCCCcHHHHHHHHHHhhccChhhHHHHHHHHhhhhhcChhhHHHHHhHh-hh-hhh
Q psy9056         140 QI---------FGKAKEKVMKMSGGLYPAPLKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFR-AQ-TEC  208 (359)
Q Consensus       140 ~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~s~~~~~~~~af~-~k-~~~  208 (359)
                      ..         .+++.....+...+++.+...++++++++...+++++++.|.+.+..++.++|++||+++|+ +| |+|
T Consensus       293 i~~~L~~~~~~~~~a~~~a~~la~~sP~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~s~D~~EGvrAflidKdr~P  372 (407)
T 3ju1_A          293 IVTRMSTLSTDEAWLSKACATMLAGSPISWHLAYIQTQLGTKLSLAQCFKWELTVSVNVCAKGDFCEGVRALLIDKDKQP  372 (407)
T ss_dssp             HHHHHHHCCCSCHHHHHHHHHHHHSCHHHHHHHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHSSHHHHHHHHTTSCCCCC
T ss_pred             HHHHHHhcccccHHHHHHHHHHHhCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCcCC
Confidence            00         12333334455556778899999999999999999999999999999999999999999998 88 887


Q ss_pred             hhcC
Q psy9056         209 KKNR  212 (359)
Q Consensus       209 ~~~~  212 (359)
                      +|.+
T Consensus       373 ~w~~  376 (407)
T 3ju1_A          373 KWQF  376 (407)
T ss_dssp             CCSS
T ss_pred             CCCC
Confidence            7754

>3l3s_A Enoyl-COA hydratase/isomerase family protein; crotonase superfamily, dimer of trimers, PSI-2, NYSGXRC, structural genomics; 2.32A {Ruegeria pomeroyi}

Probab=99.95  E-value=6.6e-28  Score=223.29  Aligned_cols=147  Identities=18%  Similarity=0.201  Sum_probs=123.1

Q ss_pred             CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceec
Q psy9056           1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLV   80 (359)
Q Consensus         1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~   80 (359)
                      |.|+|||++|+++||+|||+++  ++|++||+++|++ ++|++++|++++|..++++|++||++++|+||+++||||+++
T Consensus       113 G~a~GgG~~lalacD~ria~~~--a~f~~pe~~~Gl~-~~g~~~~l~r~vG~~~A~~l~ltg~~~~A~eA~~~GLv~~vv  189 (263)
T 3l3s_A          113 GIATAAGLQLMAACDLAYASPA--ARFCLPGVQNGGF-CTTPAVAVSRVIGRRAVTEMALTGATYDADWALAAGLINRIL  189 (263)
T ss_dssp             SEEETHHHHHHHHSSEEEECTT--CEEECCTTTTTSC-CHHHHHHHHTTSCHHHHHHHHHHCCEEEHHHHHHHTSSSEEC
T ss_pred             CEEEHHHHHHHHHCCEEEecCC--CEEeCchhccCCC-CccHHHHHHHHcCHHHHHHHHHcCCCCCHHHHHHCCCccEEe
Confidence            6799999999999999999998  9999999999999 578899999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccccccCCCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHhhCCCCCcH
Q psy9056          81 EPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAP  160 (359)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (359)
                      |+             +++.+.+.+++++++..|+.                                           +.
T Consensus       190 ~~-------------~~l~~~a~~~a~~la~~~~~-------------------------------------------a~  213 (263)
T 3l3s_A          190 PE-------------AALATHVADLAGALAARNQA-------------------------------------------PL  213 (263)
T ss_dssp             CH-------------HHHHHHHHHHHHHHHSSCHH-------------------------------------------HH
T ss_pred             CH-------------HHHHHHHHHHHHHHHhCCHH-------------------------------------------HH
Confidence            98             89999999999999998772                                           23


Q ss_pred             HHHHHHHHHhhccChhhHHHHHHHHhhhhhcChhhHHHHHhHhhhh
Q psy9056         161 LKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQT  206 (359)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~s~~~~~~~~af~~k~  206 (359)
                      ..+|++++.....+++++++.|.+.+..++.|+|++||+++|.+..
T Consensus       214 ~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~Eg~~Af~~~~  259 (263)
T 3l3s_A          214 RRGLETLNRHLELPLEQAYALATPVMVEHFMDPGRRHLDWIDEGHH  259 (263)
T ss_dssp             HHHHHHHHHHTTSCHHHHHHHHHHHHHHHHC---------------
T ss_pred             HHHHHHHHhhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHhhccC
Confidence            3577888888888999999999999999999999999999998764

>3isa_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2, protein structure initiative, EN hydratase; 1.76A {Bordetella parapertussis}

Probab=99.95  E-value=7.3e-28  Score=221.86  Aligned_cols=145  Identities=17%  Similarity=0.265  Sum_probs=121.3

Q ss_pred             CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceec
Q psy9056           1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLV   80 (359)
Q Consensus         1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~   80 (359)
                      |.|+|||++|+++||+|||+++  ++|++||+++|++|   ++++|++++|..++++|++||++++++||+++||||+++
T Consensus       107 G~a~GgG~~lalacD~ria~~~--a~f~~pe~~~Gl~p---g~~~l~~~vG~~~A~~l~ltg~~~~a~eA~~~GLv~~vv  181 (254)
T 3isa_A          107 GRNFGAGVDLFAACKWRYCTPE--AGFRMPGLKFGLVL---GTRRFRDIVGADQALSILGSARAFDADEARRIGFVRDCA  181 (254)
T ss_dssp             SEEETHHHHHHHHSSEEEECTT--CEEECCGGGGTCCC---SHHHHHHHHCHHHHHHHHTTTCEEEHHHHHHTTSSSEEC
T ss_pred             CeEeecchhHHHhCCEEEEcCC--CEEECchhccCccH---HHHHHHHHcCHHHHHHHHHhCCCCcHHHHHHCCCccEEe
Confidence            6799999999999999999998  99999999999998   378999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccccccCCCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHhhCCCCCcH
Q psy9056          81 EPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAP  160 (359)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (359)
                      |+             +++++.+.+++++++..|+...+                                          
T Consensus       182 ~~-------------~~l~~~a~~~a~~la~~~~~a~~------------------------------------------  206 (254)
T 3isa_A          182 AQ-------------AQWPALIDAAAEAATALDPATRA------------------------------------------  206 (254)
T ss_dssp             CG-------------GGHHHHHHHHHHHHTTSCHHHHH------------------------------------------
T ss_pred             Ch-------------hHHHHHHHHHHHHHHcCCHHHHH------------------------------------------
Confidence            98             88999999999999998773211                                          


Q ss_pred             HHHHHHHHHhhccChhhHHHHHHHHhhhhhcChhhHHHHHhHhhhhhhhhcCC
Q psy9056         161 LKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQTECKKNRL  213 (359)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~s~~~~~~~~af~~k~~~~~~~~  213 (359)
                       .+|+.+.       ++.++.|.+.+..++.++|++|++.+|++||+|.+.++
T Consensus       207 -~~K~~l~-------~~~~~~e~~~~~~~~~s~d~~egi~af~ekr~p~~~~~  251 (254)
T 3isa_A          207 -TLHRVLR-------DDHDDADLAALARSAAQPGFKARIRDYLAQPAAEGHHH  251 (254)
T ss_dssp             -HHHHHHS-------CCCHHHHHHHHHHHHHSTTHHHHHHHHHHC--------
T ss_pred             -HHHHHHh-------hhhHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCC
Confidence             2333331       34556788889999999999999999999999988654

>2q35_A CURF; crotonase, lyase; 1.65A {Lyngbya majuscula} PDB: 2q34_A 2q2x_A

Probab=99.95  E-value=7.3e-28  Score=220.45  Aligned_cols=145  Identities=11%  Similarity=0.051  Sum_probs=133.2

Q ss_pred             CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceec
Q psy9056           1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLV   80 (359)
Q Consensus         1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~   80 (359)
                      |.|+|||++|+++||||||+++  ++|++||+++|++|++|++++|++++|..++++|++||++++++||+++||||+++
T Consensus        99 G~a~GgG~~lalacD~ria~~~--a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~ltg~~~~a~eA~~~GLv~~vv  176 (243)
T 2q35_A           99 GHSFGGGLLLGLYADFVVFSQE--SVYATNFMKYGFTPVGATSLILREKLGSELAQEMIYTGENYRGKELAERGIPFPVV  176 (243)
T ss_dssp             SEEETHHHHHHHTSSEEEEESS--SEEECCHHHHTSCCCSSHHHHHHHHHCHHHHHHHHHHCCCEEHHHHHHTTCSSCEE
T ss_pred             CccccchHHHHHhCCEEEEeCC--CEEECCccccCCCCcchHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHcCCCCEec
Confidence            6799999999999999999998  99999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccccccCCCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHhhCCCCCcH
Q psy9056          81 EPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAP  160 (359)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (359)
                      |+             +++.+.+.+++++++..++.                                           +.
T Consensus       177 ~~-------------~~l~~~a~~~a~~la~~~~~-------------------------------------------a~  200 (243)
T 2q35_A          177 SR-------------QDVLNYAQQLGQKIAKSPRL-------------------------------------------SL  200 (243)
T ss_dssp             CH-------------HHHHHHHHHHHHHHTTSCHH-------------------------------------------HH
T ss_pred             Ch-------------hHHHHHHHHHHHHHHhCCHH-------------------------------------------HH
Confidence            98             89999999999999988762                                           22


Q ss_pred             HHHHHHHHHhhccChhhHHHHHHHHhhhhhcChhhHHHHHhHh
Q psy9056         161 LKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFR  203 (359)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~s~~~~~~~~af~  203 (359)
                      ..+|+.++.....+++++++.|.+.+..++.|+|++|++++|+
T Consensus       201 ~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~s~d~~eg~~a~~  243 (243)
T 2q35_A          201 VALKQHLSADIKAKFPEAIKKELEIHQVTFNQPEIASRIQQEF  243 (243)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSTTHHHHHHTTC
T ss_pred             HHHHHHHHHhhhcCHHHHHHHHHHHHHHHhCCHHHHHHHhhcC
Confidence            3466777777667788999999999999999999999999874

>4di1_A Enoyl-COA hydratase ECHA17; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis, ortholog; 2.25A {Mycobacterium marinum}

Probab=99.94  E-value=2.9e-27  Score=220.25  Aligned_cols=143  Identities=22%  Similarity=0.355  Sum_probs=128.8

Q ss_pred             CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceec
Q psy9056           1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLV   80 (359)
Q Consensus         1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~   80 (359)
                      |+|+|||++|+++||||||+++  ++|++||+++|++|++|++++|++++|..++++|++||++++|+||+++||||+++
T Consensus       124 G~a~GgG~~LalacD~ria~~~--a~f~~pe~~lGl~p~~g~~~~L~r~vG~~~A~~llltG~~i~A~eA~~~GLV~~vv  201 (277)
T 4di1_A          124 GYALGAGLTLALAADWRVSGDN--VKFGATEILAGLIPGGGGMGRLTRVVGSSRAKELVFSGRFFDAEEALALGLIDDMV  201 (277)
T ss_dssp             SEEETHHHHHHHHSSEEEEETT--CEEECGGGGGTCCCCTTHHHHHHHHHCHHHHHHHHHHCCCEEHHHHHHHTSCSEEE
T ss_pred             CeEehhHHHHHHhCCEEEEcCC--CEEECcccccCCCCCchHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHCCCccEEe
Confidence            6799999999999999999998  99999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccccccCCCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHhhCCCCCcH
Q psy9056          81 EPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAP  160 (359)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (359)
                      |+             +++.+.+.+++++++..|+.                                           +.
T Consensus       202 ~~-------------~~l~~~a~~~a~~la~~~~~-------------------------------------------a~  225 (277)
T 4di1_A          202 AP-------------DDVYDSAVAWARRYLECPPR-------------------------------------------AL  225 (277)
T ss_dssp             CG-------------GGHHHHHHHHHHTTTTSCHH-------------------------------------------HH
T ss_pred             Ch-------------hHHHHHHHHHHHHHHcCCHH-------------------------------------------HH
Confidence            98             88999999999999988762                                           33


Q ss_pred             HHHHHHHHHhhccChhhHHHHHHHHhhhhhcChhhHHHHHhHhhhhhhh--hc
Q psy9056         161 LKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQTECK--KN  211 (359)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~s~~~~~~~~af~~k~~~~--~~  211 (359)
                      ..+|++++.....+++++++.|.+.+..++.|+          +||+|+  |.
T Consensus       226 ~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~----------ekR~P~~~f~  268 (277)
T 4di1_A          226 AAAKAVINDVFELEATERAAAERRRYVELFAAG----------QRGPDGRGPG  268 (277)
T ss_dssp             HHHHHHHHHTTTSCHHHHHHHHHHHHHHTTSGG----------GC--------
T ss_pred             HHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCc----------ccCCCcCcCC
Confidence            467788888888999999999999999999998          999988  64

>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*

Probab=99.94  E-value=5.8e-27  Score=221.54  Aligned_cols=141  Identities=13%  Similarity=0.273  Sum_probs=131.1

Q ss_pred             CccEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChH-HHHhhhcccccccCc-CC
Q psy9056         219 PVKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSAL-DRDRYLASLVGTLSY-DP  296 (359)
Q Consensus       219 ~~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~i~~~~~~-~~  296 (359)
                      ..+||+|||+|.||++||..++++|++|++||++++.++.+..+++..++...+.+.++.. ..+..+++++.++++ ++
T Consensus         5 ~~~~VaViGaG~MG~giA~~~a~~G~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~l~~i~~~~~l~~a   84 (319)
T 3ado_A            5 AAGDVLIVGSGLVGRSWAMLFASGGFRVKLYDIEPRQITGALENIRKEMKSLQQSGSLKGSLSAEEQLSLISSCTNLAEA   84 (319)
T ss_dssp             --CEEEEECCSHHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHTTCCCSSSCHHHHHHTEEEECCHHHH
T ss_pred             CCCeEEEECCcHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCCccCHHHHHhhcccccchHhH
Confidence            4689999999999999999999999999999999999999999999999999998887653 456677889999998 57


Q ss_pred             CCCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCcHHHHHhhcCCCCcEEeecCC
Q psy9056         297 FKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPITKIAAASKRPDKVRNMGRI  359 (359)
Q Consensus       297 l~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~rvig~h~~  359 (359)
                      +++||+||||+||++++|+++|++|.+++++++||+||||+++++++++.+.+|+||+|+|||
T Consensus        85 ~~~ad~ViEav~E~l~iK~~lf~~l~~~~~~~aIlaSNTSsl~is~ia~~~~~p~r~ig~Hff  147 (319)
T 3ado_A           85 VEGVVHIQECVPENLDLKRKIFAQLDSIVDDRVVLSSSSSCLLPSKLFTGLAHVKQCIVAHPV  147 (319)
T ss_dssp             TTTEEEEEECCCSCHHHHHHHHHHHHTTCCSSSEEEECCSSCCHHHHHTTCTTGGGEEEEEEC
T ss_pred             hccCcEEeeccccHHHHHHHHHHHHHHHhhhcceeehhhhhccchhhhhhccCCCcEEEecCC
Confidence            999999999999999999999999999999999999999999999999999999999999998

>3m6n_A RPFF protein; enoyl-COA hydratase, lyase; 1.80A {Xanthomonas campestris PV} PDB: 3m6m_A

Probab=99.94  E-value=2.2e-26  Score=217.25  Aligned_cols=149  Identities=17%  Similarity=0.094  Sum_probs=135.1

Q ss_pred             CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceec
Q psy9056           1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLV   80 (359)
Q Consensus         1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~   80 (359)
                      |+|+|||++|+++||+|||+++  ++|++||+++|++|++|++++|++++|..++++|++||++++|+||+++||||+++
T Consensus       149 G~a~GgG~~LalacD~ria~~~--a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~A~~llltG~~i~A~eA~~~GLv~~vv  226 (305)
T 3m6n_A          149 GNALGGGFEAALSCHTIIAEEG--VMMGLPEVLFDLFPGMGAYSFMCQRISAHLAQKIMLEGNLYSAEQLLGMGLVDRVV  226 (305)
T ss_dssp             SCEETHHHHHHHHSSEEEEETT--CEEECGGGGGTCCCCSSHHHHHTTTSCHHHHHHHHHHCCEEEHHHHHHHTSCSEEE
T ss_pred             CEeehHHHHHHHhCCEEEEcCC--CEEECchhccCcCCCccHHHHHHHHhcHHHHHHHHHcCCCCCHHHHHHCCCCCEec
Confidence            7899999999999999999998  99999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccccccCCCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHhhCCCCCcH
Q psy9056          81 EPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAP  160 (359)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (359)
                      |+             +++.+.+.+++++|+. ++                                           .+.
T Consensus       227 ~~-------------~~l~~~a~~~a~~la~-~p-------------------------------------------~a~  249 (305)
T 3m6n_A          227 PR-------------GQGVAAVEQVIRESKR-TP-------------------------------------------HAW  249 (305)
T ss_dssp             CT-------------TCHHHHHHHHHHHHTT-CH-------------------------------------------HHH
T ss_pred             Ch-------------hHHHHHHHHHHHHHhh-Ch-------------------------------------------HHH
Confidence            98             8899999999999986 43                                           123


Q ss_pred             HHHHHHHHHhhccChhhHHHHHHHHhhhhhcChhhHHHHHhHhhhhhh
Q psy9056         161 LKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQTEC  208 (359)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~s~~~~~~~~af~~k~~~  208 (359)
                      ..+|+.++.....+++++++.|.+.+..++.++|....+..++-+...
T Consensus       250 ~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~~~~m~~l~~~q~  297 (305)
T 3m6n_A          250 AAMQQVREMTTAVPLEEMMRITEIWVDTAMQLGEKSLRTMDRLVRAQS  297 (305)
T ss_dssp             HHHHHHHHTTTCCCHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHhhhcCCHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHh
Confidence            357788888888999999999999999999999998887766655553

>1pjh_A Enoyl-COA isomerase; ECI1P; beta-BETA-alpha spiral fold, inter-trimer contacts; 2.10A {Saccharomyces cerevisiae} SCOP: c.14.1.3 PDB: 1hno_A 1k39_A* 1hnu_A

Probab=99.93  E-value=5.1e-26  Score=212.48  Aligned_cols=147  Identities=14%  Similarity=0.111  Sum_probs=119.8

Q ss_pred             CCCCchHHHHHHhcCEEEEe-cCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCccee
Q psy9056           1 MFAEPSLATVALACHYRIVV-KDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQL   79 (359)
Q Consensus         1 ~~a~GgG~~lalacD~ria~-~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~   79 (359)
                      |+|+|||++|+++||+|||+ ++  ++|++||+++|++|++|++++|++++|..++++|++||++++|+||+++||||++
T Consensus       121 G~a~GgG~~LalacD~~ia~~~~--a~f~~pe~~lGl~p~~g~~~~l~r~vG~~~A~~llltg~~~~a~eA~~~GLv~~v  198 (280)
T 1pjh_A          121 GPAIGLSAALVALCDIVYSINDK--VYLLYPFANLGLITEGGTTVSLPLKFGTNTTYECLMFNKPFKYDIMCENGFISKN  198 (280)
T ss_dssp             SCEEHHHHHHHHHSSEEEESSTT--CEEECCHHHHTCCCCTTHHHHHHHHHCHHHHHHHHHTTCCEEHHHHHHTTCCSEE
T ss_pred             CeeeeHHHHHHHHCCEEEEeCCC--CEEeCchhhcCCCCCccHHHHHHHHhCHHHHHHHHHhCCCCCHHHHHHCCCccee
Confidence            68999999999999999999 88  9999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCCCCcchhhHHHHHHHHH-HHHHHHhcCccccccCCCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHhhCCCCC
Q psy9056          80 VEPLGPGLNHPEERTMEYLEEVAV-NTASQLASGKLKINRTKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYP  158 (359)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (359)
                      +|+.        +...+++.+.+. +++++|+..++..                                          
T Consensus       199 v~~~--------~~~~~~l~~~a~~~~a~~la~~~~~a------------------------------------------  228 (280)
T 1pjh_A          199 FNMP--------SSNAEAFNAKVLEELREKVKGLYLPS------------------------------------------  228 (280)
T ss_dssp             CCCC--------TTCHHHHHHHHHHHHHHHHTTCCHHH------------------------------------------
T ss_pred             eCCc--------cccHHHHHHHHHHHHHHHHHcCCHHH------------------------------------------
Confidence            9971        000026888884 8999999887632                                          


Q ss_pred             cHHHHHHHHHHhhccChhhHHHHHHHHhhhhhcChhhHHHHHhHhhhhhh-hhcC
Q psy9056         159 APLKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQTEC-KKNR  212 (359)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~s~~~~~~~~af~~k~~~-~~~~  212 (359)
                       ...+|++++...    ...++        ...++|+++++.+|.+||+| .+..
T Consensus       229 -~~~~K~~l~~~~----~~~l~--------~~~~~d~~e~~~af~~kr~~e~~~~  270 (280)
T 1pjh_A          229 -CLGMKKLLKSNH----IDAFN--------KANSVEVNESLKYWVDGEPLKRFRQ  270 (280)
T ss_dssp             -HHHHHHHHHTTT----HHHHH--------HHHHHHHHHHHHHHHHTHHHHHHTC
T ss_pred             -HHHHHHHHHHhH----HHHHH--------HhhhHHHHHHHHHHhCCccHHHHHH
Confidence             223455555432    22222        13588999999999999998 5543

>2np9_A DPGC; protein inhibitor complex, oxidoreductase; HET: YE1; 2.45A {Streptomyces toyocaensis} PDB: 2pg8_A*

Probab=99.92  E-value=9.1e-26  Score=220.92  Aligned_cols=144  Identities=22%  Similarity=0.225  Sum_probs=120.2

Q ss_pred             CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceec
Q psy9056           1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLV   80 (359)
Q Consensus         1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~   80 (359)
                      |+|+|||++|+++||||||+++  ++|++||+++|++|++| +++|++++|..++++|++||++|+++||+++||||++|
T Consensus       293 G~A~GGG~eLALaCDirIAae~--A~Fglpev~lGl~P~~g-~~~L~rlvG~~~A~ellLtG~~i~A~EA~~~GLV~~Vv  369 (440)
T 2np9_A          293 GFAIGGGAQLLLVFDRVLASSD--AYFSLPAAKEGIIPGAA-NLRLGRFAGPRVSRQVILEGRRIWAKEPEARLLVDEVV  369 (440)
T ss_dssp             SEEETHHHHHGGGCSEEEEETT--CEEECCCTTTCCCCTTH-HHHHHHHHHHHHHHHHHHHCCCEETTSGGGGGTCSEEE
T ss_pred             CcccccchHHHhhCCEEEEcCC--CEEECchhccCcCcchH-HHHHHHHhhHHHHHHHHHcCCCCCHHHHHHCCCCcEec
Confidence            6899999999999999999998  99999999999999887 68999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccccccCCCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHhhCCCCCcH
Q psy9056          81 EPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAP  160 (359)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (359)
                      |+             +++++.+.+++.+++.  .                                            +.
T Consensus       370 p~-------------~eL~~~a~~~A~~la~--~--------------------------------------------Av  390 (440)
T 2np9_A          370 EP-------------DELDAAIERSLTRLDG--D--------------------------------------------AV  390 (440)
T ss_dssp             CH-------------HHHHHHHHHHHHTTCS--H--------------------------------------------HH
T ss_pred             Ch-------------HHHHHHHHHHHHHhCH--H--------------------------------------------HH
Confidence            98             8899988888887742  1                                            11


Q ss_pred             HHHHHHHHHhhccCh---hhHHHHHHHHhhhhhcChhhHHHHHhHhhhhh
Q psy9056         161 LKILDVVRTGIEKGP---SAGYEAEAEGFSQLAMTPQSKGLMGLFRAQTE  207 (359)
Q Consensus       161 ~~~~~~~~~~~~~~~---~~~~~~e~~~~~~~~~s~~~~~~~~af~~k~~  207 (359)
                      ..+|++++.... ++   .+.+..|...+..++.|+|++|++.+|++||+
T Consensus       391 ~~~K~~l~~~~~-~~~~~~~~l~~e~~~~~~~~~s~D~~Egv~AFleKR~  439 (440)
T 2np9_A          391 LANRRMLNLADE-SPDGFRAYMAEFALMQALRLYGHDVIDKVGRFGGRPP  439 (440)
T ss_dssp             HHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHHHTCHHHHHHHHTCC----
T ss_pred             HHHHHHHHhhhc-chhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhCCC
Confidence            245555555433 33   34556677788889999999999999999986

>2j5g_A ALR4455 protein; enzyme evolution, C-C bond hydrolase, hydrolase, lyase, crotonase, biocatalysis, beta-diketone; 1.46A {Anabaena SP} PDB: 2j5s_A* 2j5g_D

Probab=99.91  E-value=2.9e-25  Score=205.30  Aligned_cols=137  Identities=16%  Similarity=0.084  Sum_probs=119.3

Q ss_pred             CCCCchHHHHHHhcCEEEEecCCceEEec-cccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCccee
Q psy9056           1 MFAEPSLATVALACHYRIVVKDKKTGLGL-PEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQL   79 (359)
Q Consensus         1 ~~a~GgG~~lalacD~ria~~~~~~~~~~-pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~   79 (359)
                      |.|+ ||++|+++||+|||+++  ++|++ ||+++|++|++|++++|++++|..++++|++||++++++||+++||||++
T Consensus       126 G~a~-GG~~LalacD~ria~~~--a~f~~~pe~~lGl~p~~g~~~~L~r~vG~~~A~~llltG~~~~A~eA~~~GLv~~v  202 (263)
T 2j5g_A          126 GAAL-LHSEYILTTDIILASEN--TVFQDMPHLNAGIVPGDGVHILWPLALGLYRGRYFLFTQEKLTAQQAYELNVVHEV  202 (263)
T ss_dssp             SEEC-SCGGGGGGCSEEEEETT--CEECCCHHHHHTCCCCSSHHHHHHHHHHHHHHHHHHHTTCCEEHHHHHHTTSCSEE
T ss_pred             Ccch-HHHHHHHhCCEEEEcCC--CEEecCcccccccCCCccHHHHHHHHcCHHHHHHHHHcCCCCCHHHHHHCCCccEe
Confidence            5788 58999999999999998  99999 99999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccccccCCCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHhhCCCCCc
Q psy9056          80 VEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPA  159 (359)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (359)
                      +|+             +++.+.+.+++++++..++..                                           
T Consensus       203 v~~-------------~~l~~~a~~~a~~la~~~~~a-------------------------------------------  226 (263)
T 2j5g_A          203 LPQ-------------SKLMERAWEIARTLAKQPTLN-------------------------------------------  226 (263)
T ss_dssp             ECG-------------GGHHHHHHHHHHHHHTSCHHH-------------------------------------------
T ss_pred             cCh-------------HHHHHHHHHHHHHHHhCCHHH-------------------------------------------
Confidence            998             889999999999999987632                                           


Q ss_pred             HHHHHHHHHHhhccChhhHHHHHHHHhhhhhcChhhHHHHHhHhhhhh
Q psy9056         160 PLKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQTE  207 (359)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~s~~~~~~~~af~~k~~  207 (359)
                      ...+|++++.....++++++..|.           ..|||++|++||.
T Consensus       227 ~~~~K~~l~~~~~~~l~~~l~~e~-----------~~eg~~af~~~~~  263 (263)
T 2j5g_A          227 LRYTRVALTQRLKRLVNEGIGYGL-----------ALEGITATDLRNT  263 (263)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHTTC-
T ss_pred             HHHHHHHHHhhhhccHHHHHHHHH-----------HHhhHHHHHhccC
Confidence            224566666666566666666654           4599999999974

>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans}

Probab=99.91  E-value=7.4e-24  Score=209.23  Aligned_cols=141  Identities=22%  Similarity=0.375  Sum_probs=130.8

Q ss_pred             CCCCccEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcC
Q psy9056         216 PQTPVKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYD  295 (359)
Q Consensus       216 ~~~~~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~  295 (359)
                      ++++|+||+|||+|.||++||..++++|++|++||++++   +....++..+++..+.|.++....+..+++++++++++
T Consensus        50 ~~~~i~kVaVIGaG~MG~~IA~~la~aG~~V~l~D~~~e---~a~~~i~~~l~~~~~~G~l~~~~~~~~~~~i~~t~dl~  126 (460)
T 3k6j_A           50 EAYDVNSVAIIGGGTMGKAMAICFGLAGIETFLVVRNEQ---RCKQELEVMYAREKSFKRLNDKRIEKINANLKITSDFH  126 (460)
T ss_dssp             CCCCCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHH---HHHHHHHHHHHHHHHTTSCCHHHHHHHHTTEEEESCGG
T ss_pred             CcccCCEEEEECCCHHHHHHHHHHHHCCCeEEEEECcHH---HHHHHHHHHHHHHHHcCCCCHHHHHHHhcceEEeCCHH
Confidence            347889999999999999999999999999999999998   34556777788888899998888888889999999998


Q ss_pred             CCCCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCcHHHHHhhcCCCCcEEeecCC
Q psy9056         296 PFKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPITKIAAASKRPDKVRNMGRI  359 (359)
Q Consensus       296 ~l~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~rvig~h~~  359 (359)
                      ++++||+||+|+|++.++|+.+|++|.+++++++||+|+||+++++++++.+..|++++|+|||
T Consensus       127 al~~aDlVIeAVpe~~~vk~~v~~~l~~~~~~~aIlasnTSsl~i~~ia~~~~~p~r~iG~Hff  190 (460)
T 3k6j_A          127 KLSNCDLIVESVIEDMKLKKELFANLENICKSTCIFGTNTSSLDLNEISSVLRDPSNLVGIHFF  190 (460)
T ss_dssp             GCTTCSEEEECCCSCHHHHHHHHHHHHTTSCTTCEEEECCSSSCHHHHHTTSSSGGGEEEEECC
T ss_pred             HHccCCEEEEcCCCCHHHHHHHHHHHHhhCCCCCEEEecCCChhHHHHHHhccCCcceEEEEec
Confidence            8999999999999999999999999999999999999999999999999999999999999997

>3njd_A Enoyl-COA hydratase; ssgcid, mycobacerium smegmatis, structu genomics, seattle structural genomics center for infectious lyase; 1.75A {Mycobacterium smegmatis} PDB: 3njb_A

Probab=99.91  E-value=2.8e-24  Score=205.29  Aligned_cols=97  Identities=16%  Similarity=0.241  Sum_probs=92.4

Q ss_pred             CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceec
Q psy9056           1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLV   80 (359)
Q Consensus         1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~   80 (359)
                      |+|+|||++|+++||+|||+++  ++|++||+++|++|++|   +|++++|..+|++|++||++++|+||+++||||+++
T Consensus       166 G~a~GgG~~LalacD~rias~~--a~f~~pe~~lG~~P~~g---~l~~~vG~~~A~ellltG~~i~A~eA~~~GLV~~vv  240 (333)
T 3njd_A          166 GYCVAGGTDIALHADQVIAAAD--AKIGYPPMRVWGVPAAG---LWAHRLGDQRAKRLLFTGDCITGAQAAEWGLAVEAP  240 (333)
T ss_dssp             SEEETHHHHHHTTSSEEEECTT--CEEECGGGGTTCCCTTC---CHHHHHCHHHHHHHHTTCCEEEHHHHHHTTSSSBCC
T ss_pred             CEEeHHHHHHHHhCCEEEECCC--CeeechhhceeccCHHH---HHHHHHHHHHHHHHHhcCCCCCHHHHHHCCCccEec
Confidence            6899999999999999999998  99999999999999876   588999999999999999999999999999999999


Q ss_pred             CCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccc
Q psy9056          81 EPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLK  115 (359)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~  115 (359)
                      |+             +++.+++.+++++|+..|+.
T Consensus       241 ~~-------------~~l~~~a~~lA~~ia~~~~~  262 (333)
T 3njd_A          241 DP-------------ADLDARTERLVERIAAMPVN  262 (333)
T ss_dssp             CG-------------GGHHHHHHHHHHHHHTSCHH
T ss_pred             Ch-------------HHHHHHHHHHHHHHHcCCHH
Confidence            98             88999999999999998873

>3r6h_A Enoyl-COA hydratase, ECHA3; ssgcid, mycobacerium marinum, structura genomics, seattle structural genomics center for infectious lyase; 1.75A {Mycobacterium marinum M} PDB: 4hc8_A*

Probab=99.91  E-value=5.1e-25  Score=200.34  Aligned_cols=128  Identities=18%  Similarity=0.096  Sum_probs=115.8

Q ss_pred             CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceec
Q psy9056           1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLV   80 (359)
Q Consensus         1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~   80 (359)
                      |.|+|||++|+++||+||++++  ++|++||+++|++|++++++++++++|..+++++++||++++|+||+++||||+++
T Consensus       104 G~a~GgG~~lalacD~~ia~~~--a~f~~pe~~~Gl~~~~~g~~~l~~~~g~~~a~~l~ltg~~~~a~eA~~~Glv~~vv  181 (233)
T 3r6h_A          104 GHAIAMGAFLLCSGDHRVAAHA--YNVQANEVAIGMTIPYAAMEVLKLRLTPSAYQQAAGLAKTFFGETALAAGFIDEIS  181 (233)
T ss_dssp             SEEETHHHHHHTTSSEEEECTT--CCEECCGGGGTCCCCHHHHHHHHHHSCHHHHHHHHHSCCEECHHHHHHHTSCSEEC
T ss_pred             CcchHHHHHHHHhCCEEEEeCC--cEEECchhhhCCCCCccHHHHHHHHhCHHHHHHHHHcCCcCCHHHHHHcCCCcEee
Confidence            6799999999999999999998  99999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccccccCCCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHhhCCCCCcH
Q psy9056          81 EPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAP  160 (359)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (359)
                      |+             +++.+.+.++++++++.|+.                                           +.
T Consensus       182 ~~-------------~~l~~~a~~~a~~la~~~~~-------------------------------------------a~  205 (233)
T 3r6h_A          182 LP-------------EVVLSRAEEAAREFAGLNQQ-------------------------------------------AH  205 (233)
T ss_dssp             CG-------------GGHHHHHHHHHHHHHTSCHH-------------------------------------------HH
T ss_pred             CH-------------HHHHHHHHHHHHHHHcCCHH-------------------------------------------HH
Confidence            98             88999999999999998773                                           22


Q ss_pred             HHHHHHHHHhhccChhhHHHHHHHHh
Q psy9056         161 LKILDVVRTGIEKGPSAGYEAEAEGF  186 (359)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~e~~~~  186 (359)
                      ..+|+.+++....+++++++.|.+.|
T Consensus       206 ~~~K~~l~~~~~~~l~~~l~~e~~~f  231 (233)
T 3r6h_A          206 NATKLRARAEALKAIRAGIDGIEAEF  231 (233)
T ss_dssp             HHHHHHTTHHHHHHHHHHHHTSHHHH
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHh
Confidence            34566667777778888888887766

>3ot6_A Enoyl-COA hydratase/isomerase family protein; structural genomics, PSI-2, protein structure initiative; 2.50A {Pseudomonas syringae PV}

Probab=99.91  E-value=1.1e-24  Score=197.86  Aligned_cols=129  Identities=23%  Similarity=0.249  Sum_probs=116.7

Q ss_pred             CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceec
Q psy9056           1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLV   80 (359)
Q Consensus         1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~   80 (359)
                      |+|+|||++|+++||||||+++ .++|++||+++|++|++++++++++++|..+++++++||++++|+||+++||||+++
T Consensus       103 G~a~GgG~~lalacD~ria~~~-~a~f~~pe~~~Gl~p~~~g~~~l~~~ig~~~a~~l~ltg~~i~A~eA~~~GLv~~vv  181 (232)
T 3ot6_A          103 GHAVAKGAFLLLSADYRIGVAG-PFSIGLNEVQIGMTMHHAGIELARDRLRKSAFNRSVINAEMFDPEGAMAAGFLDKVV  181 (232)
T ss_dssp             EEEETHHHHHHTTSSEEEEECS-SCCEECCTTTTTCCCCHHHHHHHHHHSCHHHHHHHHTSCCEECHHHHHHHTSCSEEE
T ss_pred             CEeehHHHHHHHHCCEEEEeCC-CcEEECcccccCCCCchhHHHHHHHHhCHHHHHHHHHcCCccCHHHHHHCCCCCEec
Confidence            5799999999999999999985 269999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccccccCCCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHhhCCCCCcH
Q psy9056          81 EPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAP  160 (359)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (359)
                      |+             +++.+.+.++++++++.|+.                                           +.
T Consensus       182 ~~-------------~~l~~~a~~~a~~la~~~~~-------------------------------------------a~  205 (232)
T 3ot6_A          182 SV-------------EELQGAALAVAAQLKKINMN-------------------------------------------AH  205 (232)
T ss_dssp             CT-------------TTHHHHHHHHHHHHTTSCHH-------------------------------------------HH
T ss_pred             CH-------------HHHHHHHHHHHHHHHcCCHH-------------------------------------------HH
Confidence            98             88999999999999998772                                           23


Q ss_pred             HHHHHHHHHhhccChhhHHHHHHHHh
Q psy9056         161 LKILDVVRTGIEKGPSAGYEAEAEGF  186 (359)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~e~~~~  186 (359)
                      ..+|+.++.....+++++++.|.+.|
T Consensus       206 ~~~K~~l~~~~~~~l~~~l~~E~~~~  231 (232)
T 3ot6_A          206 KKTKLKVRKGLLDTLDAAIEQDRQHM  231 (232)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHhHhHHHHHHHHHHHhc
Confidence            35677788888888999999998765

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}

Probab=99.90  E-value=2.6e-23  Score=207.16  Aligned_cols=167  Identities=31%  Similarity=0.382  Sum_probs=140.0

Q ss_pred             cChhhHHHHHhHhhhhhhhhcCC-------CCCCCCccEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHH
Q psy9056         191 MTPQSKGLMGLFRAQTECKKNRL-------GKPQTPVKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQI  263 (359)
Q Consensus       191 ~s~~~~~~~~af~~k~~~~~~~~-------~~~~~~~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~  263 (359)
                      .|++++..++.|+.+|..++++.       ..+.+.+++|+|||+|.||.+||..++++|++|++||++++.++.+...+
T Consensus         1 ~~~~~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~kV~VIGaG~MG~~iA~~la~~G~~V~l~D~~~~~~~~~~~~i   80 (463)
T 1zcj_A            1 ASGQAKALQYAFFAEKSANKWSTPSGASWKTASAQPVSSVGVLGLGTMGRGIAISFARVGISVVAVESDPKQLDAAKKII   80 (463)
T ss_dssp             -CHHHHHHHHHHHGGGGGGSCBCTTCCBTTTCCCCCCCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHhcCCCCccCCCccccccCCCCEEEEECcCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHH
Confidence            47899999999999998877432       22457789999999999999999999999999999999999999988888


Q ss_pred             HHhHHHHHhhccCChHHHHhhhcccccccCcCCCCCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCcHHHH
Q psy9056         264 KTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPFKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPITKI  343 (359)
Q Consensus       264 ~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~l  343 (359)
                      ...++..++.+.++....+...  ..++++++.+++||+||+|+|++.++++.+++++.+++++++||+|+|++++++.+
T Consensus        81 ~~~l~~~~~~g~~~~~~~~~~~--~~i~~~~~~~~~aDlVIeaVpe~~~~k~~v~~~l~~~~~~~~ii~snTs~~~~~~l  158 (463)
T 1zcj_A           81 TFTLEKEASRAHQNGQASAKPK--LRFSSSTKELSTVDLVVEAVFEDMNLKKKVFAELSALCKPGAFLCTNTSALNVDDI  158 (463)
T ss_dssp             HHHHHHHHHHHHHTTCCCCCCC--EEEESCGGGGTTCSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSSSCHHHH
T ss_pred             HHHHHHHHHcCCCCHHHHHHHH--hhhcCCHHHHCCCCEEEEcCCCCHHHHHHHHHHHHhhCCCCeEEEeCCCCcCHHHH
Confidence            7777766666544322111111  23366777789999999999999999999999999999999999999999999999


Q ss_pred             HhhcCCCCcEEeecCC
Q psy9056         344 AAASKRPDKVRNMGRI  359 (359)
Q Consensus       344 ~~~~~~~~rvig~h~~  359 (359)
                      ++.+..+++++|+|||
T Consensus       159 a~~~~~~~~~ig~hf~  174 (463)
T 1zcj_A          159 ASSTDRPQLVIGTHFF  174 (463)
T ss_dssp             HTTSSCGGGEEEEEEC
T ss_pred             HHHhcCCcceEEeecC
Confidence            9999889999999996

>1szo_A 6-oxocamphor hydrolase; enzyme-product complex; HET: CAX; 1.90A {Rhodococcus SP} SCOP: c.14.1.3 PDB: 1o8u_A

Probab=99.89  E-value=2.1e-23  Score=192.34  Aligned_cols=98  Identities=19%  Similarity=0.234  Sum_probs=94.5

Q ss_pred             CCCCchHHHHHHhcCEEEEecCCceEEec-cccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCccee
Q psy9056           1 MFAEPSLATVALACHYRIVVKDKKTGLGL-PEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQL   79 (359)
Q Consensus         1 ~~a~GgG~~lalacD~ria~~~~~~~~~~-pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~   79 (359)
                      |+|+| |++|+++|||||++++  ++|++ ||+++|++|++|++++|++++|..++++|++||++++++||+++||||++
T Consensus       117 G~a~G-G~~LalacD~ria~~~--a~f~~~pe~~lGl~p~~g~~~~l~r~vG~~~A~~llltG~~~~A~eA~~~GLv~~v  193 (257)
T 1szo_A          117 GPVTN-APEIPVMSDIVLAAES--ATFQDGPHFPSGIVPGDGAHVVWPHVLGSNRGRYFLLTGQELDARTALDYGAVNEV  193 (257)
T ss_dssp             SCBCS-STHHHHTSSEEEEETT--CEEECTTSGGGTCCCTTTHHHHHHHHHCHHHHHHHHHTTCEEEHHHHHHHTSCSEE
T ss_pred             CchHH-HHHHHHHCCEEEEeCC--CEEecCcccccccCCCccHHHHHHHHcCHHHHHHHHHcCCCCCHHHHHHCCCceEE
Confidence            67885 8999999999999998  99999 99999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCcc
Q psy9056          80 VEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKL  114 (359)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~  114 (359)
                      +|+             +++.+.+.+++++++..++
T Consensus       194 v~~-------------~~l~~~a~~~a~~la~~~~  215 (257)
T 1szo_A          194 LSE-------------QELLPRAWELARGIAEKPL  215 (257)
T ss_dssp             ECH-------------HHHHHHHHHHHHHHHTSCH
T ss_pred             eCh-------------HHHHHHHHHHHHHHHhCCH
Confidence            998             8999999999999999877

>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli}

Probab=99.88  E-value=1.5e-22  Score=202.16  Aligned_cols=142  Identities=36%  Similarity=0.549  Sum_probs=134.4

Q ss_pred             CCccEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcCCC
Q psy9056         218 TPVKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPF  297 (359)
Q Consensus       218 ~~~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l  297 (359)
                      |.++||+|||+|+||.+||..++++|++|++||++++.++.+.+.+...+++..+.|.++....+...++++++++++.+
T Consensus         3 m~~~kVgVIGaG~MG~~IA~~la~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~   82 (483)
T 3mog_A            3 LNVQTVAVIGSGTMGAGIAEVAASHGHQVLLYDISAEALTRAIDGIHARLNSRVTRGKLTAETCERTLKRLIPVTDIHAL   82 (483)
T ss_dssp             -CCCCEEEECCSHHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHTTTTTTSSCHHHHHHHHHTEEEECCGGGG
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceeEeCCHHHh
Confidence            35789999999999999999999999999999999999999999999999999999999988888888999999999889


Q ss_pred             CCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCcHHHHHhhcCCCCcEEeecCC
Q psy9056         298 KNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPITKIAAASKRPDKVRNMGRI  359 (359)
Q Consensus       298 ~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~rvig~h~~  359 (359)
                      ++||+||+|+|++.++|+.+++++.+++++++||+|++|+++++.+++.+..|++++|+|||
T Consensus        83 ~~aDlVIeAVpe~~~vk~~v~~~l~~~~~~~~IlasntSti~i~~ia~~~~~p~~~ig~hf~  144 (483)
T 3mog_A           83 AAADLVIEAASERLEVKKALFAQLAEVCPPQTLLTTNTSSISITAIAAEIKNPERVAGLHFF  144 (483)
T ss_dssp             GGCSEEEECCCCCHHHHHHHHHHHHHHSCTTCEEEECCSSSCHHHHTTTSSSGGGEEEEEEC
T ss_pred             cCCCEEEEcCCCcHHHHHHHHHHHHHhhccCcEEEecCCCCCHHHHHHHccCccceEEeeec
Confidence            99999999999999999999999999999999999999999999999999999999999997

>3t3w_A Enoyl-COA hydratase; ssgcid, structural genomics, seattle ST genomics center for infectious disease, lyase; 1.80A {Mycobacterium thermoresistibile} PDB: 3ome_A

Probab=99.87  E-value=9.9e-23  Score=190.02  Aligned_cols=97  Identities=15%  Similarity=0.212  Sum_probs=90.1

Q ss_pred             CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceec
Q psy9056           1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLV   80 (359)
Q Consensus         1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~   80 (359)
                      |.|+|||++|+++||+||++++  ++|++||+++|+ |++++..+ ++++|..++++|++||++++|+||+++||||+++
T Consensus       126 G~a~GgG~~LalacD~ria~~~--a~f~~pe~~~Gl-~~~~~~~~-~~~vG~~~A~~llltG~~i~A~eA~~~GLv~~vv  201 (279)
T 3t3w_A          126 GRCISGGLLLCWPCDLIIAAED--ALFSDPVVLMDI-GGVEYHGH-TWELGPRKAKEILFTGRAMTAEEVAQTGMVNRVV  201 (279)
T ss_dssp             SEEEGGGHHHHTTSSEEEEETT--CEEECCGGGGTC-SSCSSCCH-HHHHCHHHHHHHHHHCCCEEHHHHHHHTSCSEEE
T ss_pred             CeEhHHHHHHHHhCCEEEecCC--CEEeCcHHhcCC-CCchHHHH-HhhcCHHHHHHHHHcCCccCHHHHHHCCCCcEee
Confidence            6799999999999999999998  999999999999 54454443 9999999999999999999999999999999999


Q ss_pred             CCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCcc
Q psy9056          81 EPLGPGLNHPEERTMEYLEEVAVNTASQLASGKL  114 (359)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~  114 (359)
                      |+             +++.+.+.+++++|+..|+
T Consensus       202 ~~-------------~~l~~~a~~~a~~la~~~~  222 (279)
T 3t3w_A          202 PR-------------DRLDAETRALAGEIAKMPP  222 (279)
T ss_dssp             CG-------------GGHHHHHHHHHHHHHTSCH
T ss_pred             Ch-------------HHHHHHHHHHHHHHHcCCH
Confidence            98             8899999999999999877

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=99.87  E-value=1.2e-21  Score=183.07  Aligned_cols=142  Identities=23%  Similarity=0.295  Sum_probs=129.8

Q ss_pred             CCccEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhc-cCChHHHHhhhcccccccCcC-
Q psy9056         218 TPVKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRK-KMSALDRDRYLASLVGTLSYD-  295 (359)
Q Consensus       218 ~~~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~i~~~~~~~-  295 (359)
                      |.+++|+|||+|.||.+||..++++|++|++||++++.++.+.+.+...++.+.+.+ .++....+...+++..+++++ 
T Consensus         2 m~~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~   81 (283)
T 4e12_A            2 TGITNVTVLGTGVLGSQIAFQTAFHGFAVTAYDINTDALDAAKKRFEGLAAVYEKEVAGAADGAAQKALGGIRYSDDLAQ   81 (283)
T ss_dssp             CSCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHSTTCTTTHHHHHHHHCEEESCHHH
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHcCeEEeCCHHH
Confidence            457899999999999999999999999999999999999999988888888888877 777766667777888888884 


Q ss_pred             CCCCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCcHHHHHhhcCCCCcEEeecCC
Q psy9056         296 PFKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPITKIAAASKRPDKVRNMGRI  359 (359)
Q Consensus       296 ~l~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~rvig~h~~  359 (359)
                      .+++||+||+|+|++.+.++.+++++.+++++++||+|++|+++++++++.+..+.+++|+|||
T Consensus        82 ~~~~aDlVi~av~~~~~~~~~v~~~l~~~~~~~~il~s~tS~~~~~~la~~~~~~~~~ig~h~~  145 (283)
T 4e12_A           82 AVKDADLVIEAVPESLDLKRDIYTKLGELAPAKTIFATNSSTLLPSDLVGYTGRGDKFLALHFA  145 (283)
T ss_dssp             HTTTCSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSSSCHHHHHHHHSCGGGEEEEEEC
T ss_pred             HhccCCEEEEeccCcHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCCcceEEEccC
Confidence            6899999999999999999999999999999999999999999999999999889999999996

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=99.85  E-value=7.6e-21  Score=179.10  Aligned_cols=142  Identities=30%  Similarity=0.468  Sum_probs=125.1

Q ss_pred             CCccEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChH-----HHHhhhccccccc
Q psy9056         218 TPVKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSAL-----DRDRYLASLVGTL  292 (359)
Q Consensus       218 ~~~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~-----~~~~~~~~i~~~~  292 (359)
                      ++|++|+|||+|.||.+||..++++|++|++||+++++++.+...+...++...+.|.++..     .......++++++
T Consensus        13 ~~~~~I~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~   92 (302)
T 1f0y_A           13 IIVKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATST   92 (302)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEEES
T ss_pred             ccCCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCccccchhhHHHHHhceEEec
Confidence            46789999999999999999999999999999999999999888777777777777766543     3334456788888


Q ss_pred             CcC-CCCCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCcHHHHHhhcCCCCcEEeecCC
Q psy9056         293 SYD-PFKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPITKIAAASKRPDKVRNMGRI  359 (359)
Q Consensus       293 ~~~-~l~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~rvig~h~~  359 (359)
                      +++ .+++||+||+|+|++.++++.+++++.+++++++||+|++|+++++++++.+..+.+++++||+
T Consensus        93 ~~~~~~~~aD~Vi~avp~~~~~~~~v~~~l~~~~~~~~iv~s~ts~i~~~~l~~~~~~~~~~~g~h~~  160 (302)
T 1f0y_A           93 DAASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTSSLQITSIANATTRQDRFAGLHFF  160 (302)
T ss_dssp             CHHHHTTSCSEEEECCCSCHHHHHHHHHHHTTTSCTTCEEEECCSSSCHHHHHTTSSCGGGEEEEEEC
T ss_pred             CHHHhhcCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCCCCHHHHHHhcCCcccEEEEecC
Confidence            885 7899999999999999999999999999999999999999999999999988888999999986

>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus}

Probab=99.83  E-value=2e-20  Score=175.23  Aligned_cols=122  Identities=33%  Similarity=0.488  Sum_probs=106.9

Q ss_pred             CCccEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcCCC
Q psy9056         218 TPVKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPF  297 (359)
Q Consensus       218 ~~~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l  297 (359)
                      -+-++|+|||+|.||.+||..++ +|++|++||++++.++.+.+.+                 .+..+++++++++++++
T Consensus        10 ~~~~~V~vIG~G~MG~~iA~~la-aG~~V~v~d~~~~~~~~~~~~l-----------------~~~~~~~i~~~~~~~~~   71 (293)
T 1zej_A           10 HHHMKVFVIGAGLMGRGIAIAIA-SKHEVVLQDVSEKALEAAREQI-----------------PEELLSKIEFTTTLEKV   71 (293)
T ss_dssp             --CCEEEEECCSHHHHHHHHHHH-TTSEEEEECSCHHHHHHHHHHS-----------------CGGGGGGEEEESSCTTG
T ss_pred             cCCCeEEEEeeCHHHHHHHHHHH-cCCEEEEEECCHHHHHHHHHHH-----------------HHHHhCCeEEeCCHHHH
Confidence            34589999999999999999999 9999999999999888765531                 12334567788888779


Q ss_pred             CCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCcHHHHHhhcCCCCcEEeecCC
Q psy9056         298 KNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPITKIAAASKRPDKVRNMGRI  359 (359)
Q Consensus       298 ~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~rvig~h~~  359 (359)
                      ++||+||+|+|++.++|+.+|.++...  +++|++|+||+++++.+++.+..+.+++|+|||
T Consensus        72 ~~aDlVieavpe~~~vk~~l~~~l~~~--~~~IlasntSti~~~~~a~~~~~~~r~~G~Hf~  131 (293)
T 1zej_A           72 KDCDIVMEAVFEDLNTKVEVLREVERL--TNAPLCSNTSVISVDDIAERLDSPSRFLGVHWM  131 (293)
T ss_dssp             GGCSEEEECCCSCHHHHHHHHHHHHTT--CCSCEEECCSSSCHHHHHTTSSCGGGEEEEEEC
T ss_pred             cCCCEEEEcCcCCHHHHHHHHHHHhcC--CCCEEEEECCCcCHHHHHHHhhcccceEeEEec
Confidence            999999999999999999999998876  899999999999999999999999999999997

>2w3p_A Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ring cleaving, burkholderia xenovorans LB400 crotonase; 1.50A {Burkholderia xenovorans}

Probab=99.82  E-value=9e-21  Score=187.62  Aligned_cols=110  Identities=25%  Similarity=0.368  Sum_probs=101.7

Q ss_pred             CCCCchHHHHHHhcCEEEEecCCceEEeccccC-CCCCCCcchHhHHh--hhcChHHHHHHHhcCCCCCHHHHHHcCCcc
Q psy9056           1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVM-LGLLPGAGGTQRLP--KLTALPNVLDMTLTGKTLKADKAKKMGIVD   77 (359)
Q Consensus         1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~-~Gi~p~~g~~~~l~--~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~   77 (359)
                      |.|+|||++|+++|||||++++++++|++||++ +|++|++|++++|+  +++|..++++|++||++++++||+++||||
T Consensus       138 G~AlGGGleLALACD~rIAse~~~A~FglPEv~~LGL~Pg~Ggt~rLp~~RlVG~~rA~eLlLTGr~isA~EAl~lGLVd  217 (556)
T 2w3p_A          138 GACAGGGYELALACDEIYLVDDRSSSVSLPEVPLLGVLPGTGGLTRVTDKRKVRHDRADIFCTVVEGVRGERAKAWRLVD  217 (556)
T ss_dssp             SEEETHHHHHHHHSSEEEEECSSSCEEECCHHHHHSSCCTTTHHHHHHHTSCCCHHHHHHHTTCSSCEEHHHHHHTTSCS
T ss_pred             CeechhhHHHHHhCCEEEEcCCCCcEEecccccccCCCCCccHHHHHHhhccCCHHHHHHHHHcCCCCCHHHHHHCCCce
Confidence            679999999999999999998645999999999 99999999999999  999999999999999999999999999999


Q ss_pred             eecCCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccccccCCCCC
Q psy9056          78 QLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMI  123 (359)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~k~~~  123 (359)
                      +++|+             +++.+.+.+++++++..++.....|.+.
T Consensus       218 eVVp~-------------~eL~~~A~~lA~~LA~~~p~Av~~K~l~  250 (556)
T 2w3p_A          218 EVVKP-------------NQFDQAIQARALELAAQSDRPAHAQGVP  250 (556)
T ss_dssp             EEECH-------------HHHHHHHHHHHHHHHTTCCCCTTCCCCC
T ss_pred             EEeCh-------------hHHHHHHHHHHHHHHcCChHHHhhhhhh
Confidence            99998             8999999999999999988655445543

>3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii}

Probab=99.56  E-value=9.7e-15  Score=135.98  Aligned_cols=116  Identities=16%  Similarity=0.140  Sum_probs=97.4

Q ss_pred             CccEEEEECCCcchHHHHHHHHHCCC---eeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-
Q psy9056         219 PVKTVAVLGAGLMGAGIAHVTVDKGY---NTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-  294 (359)
Q Consensus       219 ~~~kI~IIG~G~mG~~iA~~l~~~G~---~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-  294 (359)
                      ..+||+|||+|+||.+++..|.++|+   +|++||+++++++.+.+.+                       .+..+++. 
T Consensus         2 ~~~~I~iIG~G~mG~aia~~l~~~g~~~~~V~v~dr~~~~~~~l~~~~-----------------------gi~~~~~~~   58 (280)
T 3tri_A            2 NTSNITFIGGGNMARNIVVGLIANGYDPNRICVTNRSLDKLDFFKEKC-----------------------GVHTTQDNR   58 (280)
T ss_dssp             CCSCEEEESCSHHHHHHHHHHHHTTCCGGGEEEECSSSHHHHHHHHTT-----------------------CCEEESCHH
T ss_pred             CCCEEEEEcccHHHHHHHHHHHHCCCCCCeEEEEeCCHHHHHHHHHHc-----------------------CCEEeCChH
Confidence            45789999999999999999999999   9999999999877654310                       23344444 


Q ss_pred             CCCCCccEEEEcccCCHHHHHHHHHHHHHh-CCCCcEEEEcCCCCcHHHHHhhcCCCCcEEeecCC
Q psy9056         295 DPFKNADMVIEAVFEDINIKHQVIKEIEAV-VPPHCVVATNTSAIPITKIAAASKRPDKVRNMGRI  359 (359)
Q Consensus       295 ~~l~~aD~Vi~avp~~~~~k~~v~~~l~~~-~~~~~ii~s~ts~~~~~~l~~~~~~~~rvig~h~~  359 (359)
                      +.++++|+||+|+|.+.  ++++++++.++ ++++++|+|++++++++.+.+.++.+.+++..|+.
T Consensus        59 ~~~~~aDvVilav~p~~--~~~vl~~l~~~~l~~~~iiiS~~agi~~~~l~~~l~~~~~vvr~mPn  122 (280)
T 3tri_A           59 QGALNADVVVLAVKPHQ--IKMVCEELKDILSETKILVISLAVGVTTPLIEKWLGKASRIVRAMPN  122 (280)
T ss_dssp             HHHSSCSEEEECSCGGG--HHHHHHHHHHHHHTTTCEEEECCTTCCHHHHHHHHTCCSSEEEEECC
T ss_pred             HHHhcCCeEEEEeCHHH--HHHHHHHHHhhccCCCeEEEEecCCCCHHHHHHHcCCCCeEEEEecC
Confidence            56789999999997644  78999999998 88888999999999999999999888899998873

>3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579}

Probab=99.48  E-value=5.2e-14  Score=128.42  Aligned_cols=113  Identities=22%  Similarity=0.303  Sum_probs=91.4

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCC----eeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-C
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGY----NTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-D  295 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~----~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~  295 (359)
                      +||+|||+|+||.+++..|.++|+    +|++||+++++++...+..                       .+...++. +
T Consensus         3 ~~i~iIG~G~mG~~~a~~l~~~g~~~~~~V~~~~r~~~~~~~~~~~~-----------------------g~~~~~~~~e   59 (247)
T 3gt0_A            3 KQIGFIGCGNMGMAMIGGMINKNIVSSNQIICSDLNTANLKNASEKY-----------------------GLTTTTDNNE   59 (247)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTSSCGGGEEEECSCHHHHHHHHHHH-----------------------CCEECSCHHH
T ss_pred             CeEEEECccHHHHHHHHHHHhCCCCCCCeEEEEeCCHHHHHHHHHHh-----------------------CCEEeCChHH
Confidence            689999999999999999999998    9999999999877654311                       13334444 4


Q ss_pred             CCCCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCcHHHHHhhcCCCCcEEeecC
Q psy9056         296 PFKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPITKIAAASKRPDKVRNMGR  358 (359)
Q Consensus       296 ~l~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~rvig~h~  358 (359)
                      .++++|+||+|+|.+.  .+++++++.++++++++|+|.+++++++.+.+.++.+.+++..|+
T Consensus        60 ~~~~aDvVilav~~~~--~~~v~~~l~~~l~~~~~vvs~~~gi~~~~l~~~~~~~~~~v~~~p  120 (247)
T 3gt0_A           60 VAKNADILILSIKPDL--YASIINEIKEIIKNDAIIVTIAAGKSIESTENAFNKKVKVVRVMP  120 (247)
T ss_dssp             HHHHCSEEEECSCTTT--HHHHC---CCSSCTTCEEEECSCCSCHHHHHHHHCSCCEEEEEEC
T ss_pred             HHHhCCEEEEEeCHHH--HHHHHHHHHhhcCCCCEEEEecCCCCHHHHHHHhCCCCcEEEEeC
Confidence            5788999999997655  778999999999999999999999999999988877778888886

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=99.44  E-value=5.4e-13  Score=126.16  Aligned_cols=115  Identities=14%  Similarity=0.193  Sum_probs=89.5

Q ss_pred             CCccEEEEECCCcchHHHHHHHHHCCC--eeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-
Q psy9056         218 TPVKTVAVLGAGLMGAGIAHVTVDKGY--NTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-  294 (359)
Q Consensus       218 ~~~~kI~IIG~G~mG~~iA~~l~~~G~--~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-  294 (359)
                      +.+++|+|||+|.||.++|..|.++|+  +|++||+++++++.+.+           .|..+           ..+++. 
T Consensus        31 ~~~~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~a~~-----------~G~~~-----------~~~~~~~   88 (314)
T 3ggo_A           31 LSMQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVD-----------LGIID-----------EGTTSIA   88 (314)
T ss_dssp             CSCSEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHH-----------TTSCS-----------EEESCTT
T ss_pred             cCCCEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCHHHHHHHHH-----------CCCcc-----------hhcCCHH
Confidence            446899999999999999999999999  99999999987665431           12110           234455 


Q ss_pred             C-CCCCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCc--HHHHHhhcCCCCcEEeecC
Q psy9056         295 D-PFKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIP--ITKIAAASKRPDKVRNMGR  358 (359)
Q Consensus       295 ~-~l~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~--~~~l~~~~~~~~rvig~h~  358 (359)
                      + .+++||+||+|+|.+.  ...+++++.++++++++|++.+|...  ++.+.+.++.  ++++.|+
T Consensus        89 ~~~~~~aDvVilavp~~~--~~~vl~~l~~~l~~~~iv~d~~Svk~~~~~~~~~~l~~--~~v~~hP  151 (314)
T 3ggo_A           89 KVEDFSPDFVMLSSPVRT--FREIAKKLSYILSEDATVTDQGSVKGKLVYDLENILGK--RFVGGHP  151 (314)
T ss_dssp             GGGGGCCSEEEECSCGGG--HHHHHHHHHHHSCTTCEEEECCSCCTHHHHHHHHHHGG--GEECEEE
T ss_pred             HHhhccCCEEEEeCCHHH--HHHHHHHHhhccCCCcEEEECCCCcHHHHHHHHHhcCC--CEEecCc
Confidence            4 5889999999999876  56889999999999999988776543  4566665542  8999886

>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum}

Probab=99.43  E-value=3.1e-13  Score=128.51  Aligned_cols=123  Identities=22%  Similarity=0.262  Sum_probs=91.1

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCC-eeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcCCCCC
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGY-NTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPFKN  299 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~-~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~  299 (359)
                      +||+|||+|.||.++|..++.+|+ +|++||+++++++.....+.+.....            ....+++.++|++++++
T Consensus        15 ~kI~ViGaG~vG~~iA~~la~~g~~~V~L~Di~~~~l~~~~~~l~~~~~~~------------~~~~~i~~t~d~~al~~   82 (328)
T 2hjr_A           15 KKISIIGAGQIGSTIALLLGQKDLGDVYMFDIIEGVPQGKALDLNHCMALI------------GSPAKIFGENNYEYLQN   82 (328)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSTTHHHHHHHHHHHHHHHH------------TCCCCEEEESCGGGGTT
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhHhhcc------------CCCCEEEECCCHHHHCC
Confidence            599999999999999999999999 99999999998886544444332211            01236777788888999


Q ss_pred             ccEEEEcc--cC------------CHHHHHHHHHHHHHhCCCCcEE--EEcCCCCcHHHHHhhcC-CCCcEEee
Q psy9056         300 ADMVIEAV--FE------------DINIKHQVIKEIEAVVPPHCVV--ATNTSAIPITKIAAASK-RPDKVRNM  356 (359)
Q Consensus       300 aD~Vi~av--p~------------~~~~k~~v~~~l~~~~~~~~ii--~s~ts~~~~~~l~~~~~-~~~rvig~  356 (359)
                      ||+||+++  |.            +..+++++++++.+++ +++++  +||++++....+....+ +|+||+|+
T Consensus        83 aD~VI~avg~p~k~g~tr~dl~~~n~~i~~~i~~~i~~~~-p~a~viv~tNP~~~~t~~~~~~~~~~~~rviG~  155 (328)
T 2hjr_A           83 SDVVIITAGVPRKPNMTRSDLLTVNAKIVGSVAENVGKYC-PNAFVICITNPLDAMVYYFKEKSGIPANKVCGM  155 (328)
T ss_dssp             CSEEEECCSCCCCTTCCSGGGHHHHHHHHHHHHHHHHHHC-TTCEEEECCSSHHHHHHHHHHHHCCCGGGEEES
T ss_pred             CCEEEEcCCCCCCCCCchhhHHhhhHHHHHHHHHHHHHHC-CCeEEEEecCchHHHHHHHHHhcCCChhhEEEe
Confidence            99999998  54            4577999999999998 56655  35544443333333332 57899997

>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A

Probab=99.42  E-value=2.1e-13  Score=129.14  Aligned_cols=124  Identities=22%  Similarity=0.298  Sum_probs=94.9

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCC-eeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcCCCCC
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGY-NTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPFKN  299 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~-~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~  299 (359)
                      +||+|||+|.||.++|..++.+|+ +|++||+++++++.....+.+...            ......++..+++++++++
T Consensus         5 ~kI~VIGaG~~G~~ia~~la~~g~~~V~l~D~~~~~~~~~~~~l~~~~~------------~~~~~~~i~~t~d~~a~~~   72 (317)
T 2ewd_A            5 RKIAVIGSGQIGGNIAYIVGKDNLADVVLFDIAEGIPQGKALDITHSMV------------MFGSTSKVIGTDDYADISG   72 (317)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHH------------HHTCCCCEEEESCGGGGTT
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCceEEEEeCCchHHHHHHHHHHhhhh------------hcCCCcEEEECCCHHHhCC
Confidence            589999999999999999999999 999999999887753222221110            0011235666677888999


Q ss_pred             ccEEEEcc--------------cCCHHHHHHHHHHHHHhCCCCcEEE--EcCCCCcHHHHHhhcCC-CCcEEeec
Q psy9056         300 ADMVIEAV--------------FEDINIKHQVIKEIEAVVPPHCVVA--TNTSAIPITKIAAASKR-PDKVRNMG  357 (359)
Q Consensus       300 aD~Vi~av--------------p~~~~~k~~v~~~l~~~~~~~~ii~--s~ts~~~~~~l~~~~~~-~~rvig~h  357 (359)
                      ||+||+++              +++..+++++++++.++++ +++++  ||++++..+.+.+..+. |+|++|+.
T Consensus        73 aDiVi~avg~p~~~g~~r~d~~~~~~~i~~~i~~~i~~~~~-~~iii~~sNp~~~~~~~~~~~~~~~~~rviG~~  146 (317)
T 2ewd_A           73 SDVVIITASIPGRPKDDRSELLFGNARILDSVAEGVKKYCP-NAFVICITNPLDVMVSHFQKVSGLPHNKVCGMA  146 (317)
T ss_dssp             CSEEEECCCCSSCCSSCGGGGHHHHHHHHHHHHHHHHHHCT-TSEEEECCSSHHHHHHHHHHHHCCCGGGEEESC
T ss_pred             CCEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHHHHCC-CcEEEEeCChHHHHHHHHHHhhCCCHHHEEecc
Confidence            99999999              7888899999999999975 78774  55555656677777765 78999873

>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*

Probab=99.37  E-value=2.3e-12  Score=122.17  Aligned_cols=125  Identities=18%  Similarity=0.253  Sum_probs=91.5

Q ss_pred             CccEEEEECCCcchHHHHHHHHHCCC-eeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcCCC
Q psy9056         219 PVKTVAVLGAGLMGAGIAHVTVDKGY-NTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPF  297 (359)
Q Consensus       219 ~~~kI~IIG~G~mG~~iA~~l~~~G~-~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l  297 (359)
                      +++||+|||+|.||.++|..++..|+ +|+++|+++++++.....+++.+....            ...+++.+++++++
T Consensus         3 ~~~kI~VIGaG~vG~~ia~~la~~g~~~v~L~Di~~~~l~~~~~~l~~~~~~~~------------~~~~i~~t~d~~al   70 (322)
T 1t2d_A            3 PKAKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVMAY------------SNCKVSGSNTYDDL   70 (322)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTHHHHHT------------CCCCEEEECCGGGG
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhhhhcC------------CCcEEEECCCHHHh
Confidence            35799999999999999999999999 999999999988765555554332110            11356777888889


Q ss_pred             CCccEEEEcc--cCC-----------------HHHHHHHHHHHHHhCCCCcEEE--EcCCCCcHHHHHhhcC-CCCcEEe
Q psy9056         298 KNADMVIEAV--FED-----------------INIKHQVIKEIEAVVPPHCVVA--TNTSAIPITKIAAASK-RPDKVRN  355 (359)
Q Consensus       298 ~~aD~Vi~av--p~~-----------------~~~k~~v~~~l~~~~~~~~ii~--s~ts~~~~~~l~~~~~-~~~rvig  355 (359)
                      ++||+||+++  |.+                 ..++++++++|.+++ ++++++  ||++++....+....+ +|+||+|
T Consensus        71 ~~aD~Vi~a~g~p~k~g~~~qe~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~iiv~tNP~~~~t~~~~~~~g~~~~rviG  149 (322)
T 1t2d_A           71 AGADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNC-PNAFIIVVTNPVDVMVQLLHQHSGVPKNKIIG  149 (322)
T ss_dssp             TTCSEEEECCSCSSCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHC-TTSEEEECSSSHHHHHHHHHHHHCCCGGGEEE
T ss_pred             CCCCEEEEeCCCCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCChHHHHHHHHHhcCCChHHEEe
Confidence            9999999998  643                 247889999999998 566553  5544443333333333 5789999


Q ss_pred             e
Q psy9056         356 M  356 (359)
Q Consensus       356 ~  356 (359)
                      +
T Consensus       150 ~  150 (322)
T 1t2d_A          150 L  150 (322)
T ss_dssp             C
T ss_pred             c
Confidence            7

>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}

Probab=99.34  E-value=2e-12  Score=120.38  Aligned_cols=112  Identities=26%  Similarity=0.225  Sum_probs=87.8

Q ss_pred             ccEEEEECC-CcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcCCCC
Q psy9056         220 VKTVAVLGA-GLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPFK  298 (359)
Q Consensus       220 ~~kI~IIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~  298 (359)
                      |++|+|||+ |.||.+++..|.++|++|++||+++++++.+..           .|             +..++..+.++
T Consensus        11 mm~I~iIG~tG~mG~~la~~l~~~g~~V~~~~r~~~~~~~~~~-----------~g-------------~~~~~~~~~~~   66 (286)
T 3c24_A           11 PKTVAILGAGGKMGARITRKIHDSAHHLAAIEIAPEGRDRLQG-----------MG-------------IPLTDGDGWID   66 (286)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHSSSEEEEECCSHHHHHHHHH-----------TT-------------CCCCCSSGGGG
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHh-----------cC-------------CCcCCHHHHhc
Confidence            469999999 999999999999999999999999987665422           11             12222235678


Q ss_pred             CccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCcHHHHHhhcCCCCcEEeecC
Q psy9056         299 NADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPITKIAAASKRPDKVRNMGR  358 (359)
Q Consensus       299 ~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~rvig~h~  358 (359)
                      ++|+||+|+|.+.  .+++++++.+.++++++|++.+++.+++.+.+ .....++++.|+
T Consensus        67 ~aDvVi~av~~~~--~~~v~~~l~~~l~~~~ivv~~s~~~~~~~l~~-~~~~~~~v~~~P  123 (286)
T 3c24_A           67 EADVVVLALPDNI--IEKVAEDIVPRVRPGTIVLILDAAAPYAGVMP-ERADITYFIGHP  123 (286)
T ss_dssp             TCSEEEECSCHHH--HHHHHHHHGGGSCTTCEEEESCSHHHHHTCSC-CCTTSEEEEEEE
T ss_pred             CCCEEEEcCCchH--HHHHHHHHHHhCCCCCEEEECCCCchhHHHHh-hhCCCeEEecCC
Confidence            9999999998766  67899999999999999999888877766665 333357887775

>2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A*

Probab=99.34  E-value=1.6e-12  Score=123.22  Aligned_cols=115  Identities=16%  Similarity=0.152  Sum_probs=87.7

Q ss_pred             CCccEEEEECCCcchHHHHHHHHHCC----CeeEEecCCHH--HHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccc
Q psy9056         218 TPVKTVAVLGAGLMGAGIAHVTVDKG----YNTIVKDSFEK--GLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGT  291 (359)
Q Consensus       218 ~~~~kI~IIG~G~mG~~iA~~l~~~G----~~V~l~d~~~~--~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~  291 (359)
                      +.+++|+|||+|+||.+|+..|.++|    ++|++||++++  +++.+..           .             .+.++
T Consensus        20 ~~~mkI~iIG~G~mG~ala~~L~~~G~~~~~~V~v~~r~~~~~~~~~l~~-----------~-------------G~~~~   75 (322)
T 2izz_A           20 FQSMSVGFIGAGQLAFALAKGFTAAGVLAAHKIMASSPDMDLATVSALRK-----------M-------------GVKLT   75 (322)
T ss_dssp             --CCCEEEESCSHHHHHHHHHHHHTTSSCGGGEEEECSCTTSHHHHHHHH-----------H-------------TCEEE
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCCCCcceEEEECCCccHHHHHHHHH-----------c-------------CCEEe
Confidence            33458999999999999999999999    89999999985  5554321           1             12333


Q ss_pred             cCc-CCCCCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCcHHHHHhhcCC---CCcEEeecC
Q psy9056         292 LSY-DPFKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPITKIAAASKR---PDKVRNMGR  358 (359)
Q Consensus       292 ~~~-~~l~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~---~~rvig~h~  358 (359)
                      ++. +.+.++|+||+|+|.+.  .+++++++.+.++++++|++.+++++++.+.+.+..   ..++++.|+
T Consensus        76 ~~~~e~~~~aDvVilav~~~~--~~~vl~~l~~~l~~~~ivvs~s~gi~~~~l~~~l~~~~~~~~vv~~~p  144 (322)
T 2izz_A           76 PHNKETVQHSDVLFLAVKPHI--IPFILDEIGADIEDRHIVVSCAAGVTISSIEKKLSAFRPAPRVIRCMT  144 (322)
T ss_dssp             SCHHHHHHHCSEEEECSCGGG--HHHHHHHHGGGCCTTCEEEECCTTCCHHHHHHHHHTTSSCCEEEEEEC
T ss_pred             CChHHHhccCCEEEEEeCHHH--HHHHHHHHHhhcCCCCEEEEeCCCCCHHHHHHHHhhcCCCCeEEEEeC
Confidence            344 45688999999998544  778999999999899999999999998877666542   357777664

>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*

Probab=99.32  E-value=1.5e-12  Score=124.04  Aligned_cols=123  Identities=18%  Similarity=0.230  Sum_probs=91.4

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCC-eeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcC-CCC
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGY-NTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYD-PFK  298 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~-~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~l~  298 (359)
                      +||+|||+|.||.++|..++..|+ +|++||+++++++.....+.+.+...   .         ...+++.++|++ +++
T Consensus        10 ~kI~VIGaG~vG~~lA~~la~~g~~~V~L~D~~~~~~~~~~~~l~~~~~~~---~---------~~~~i~~t~d~~ea~~   77 (331)
T 1pzg_A           10 KKVAMIGSGMIGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSVV---D---------TNVSVRAEYSYEAALT   77 (331)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHT---T---------CCCCEEEECSHHHHHT
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCeEEEEECChhHHHHHHHHHHhhhhcc---C---------CCCEEEEeCCHHHHhC
Confidence            489999999999999999999998 99999999998887555444433211   0         123577778885 799


Q ss_pred             CccEEEEcc--cCCH-----------------HHHHHHHHHHHHhCCCCcEEE--EcCCCCcHHHHHhhcC-CCCcEEee
Q psy9056         299 NADMVIEAV--FEDI-----------------NIKHQVIKEIEAVVPPHCVVA--TNTSAIPITKIAAASK-RPDKVRNM  356 (359)
Q Consensus       299 ~aD~Vi~av--p~~~-----------------~~k~~v~~~l~~~~~~~~ii~--s~ts~~~~~~l~~~~~-~~~rvig~  356 (359)
                      +||+||+++  |.++                 .++++++++|.+++ ++++++  ||++++....+....+ +|+||+|+
T Consensus        78 ~aDiVi~a~g~p~~~g~~~~~~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~vi~~tNP~~~~t~~~~~~~~~~~~rviG~  156 (331)
T 1pzg_A           78 GADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYC-PKTFIIVVTNPLDCMVKVMCEASGVPTNMICGM  156 (331)
T ss_dssp             TCSEEEECCSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHC-TTCEEEECCSSHHHHHHHHHHHHCCCGGGEEEC
T ss_pred             CCCEEEEccCCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCcEEEEEcCchHHHHHHHHHhcCCChhcEEec
Confidence            999999998  7543                 45889999999998 567654  5555554333334444 57899997

>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A

Probab=99.31  E-value=6.5e-12  Score=116.93  Aligned_cols=117  Identities=19%  Similarity=0.154  Sum_probs=87.3

Q ss_pred             CCccEEEEECCCcchHHHHHHHHHC--CCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-
Q psy9056         218 TPVKTVAVLGAGLMGAGIAHVTVDK--GYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-  294 (359)
Q Consensus       218 ~~~~kI~IIG~G~mG~~iA~~l~~~--G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-  294 (359)
                      |.+++|+|||+|+||.+++..|.++  |++|++||+++++++.+.+           .+..           ...+++. 
T Consensus         4 M~~~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~-----------~g~~-----------~~~~~~~~   61 (290)
T 3b1f_A            4 MEEKTIYIAGLGLIGASLALGIKRDHPHYKIVGYNRSDRSRDIALE-----------RGIV-----------DEATADFK   61 (290)
T ss_dssp             GCCCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSHHHHHHHHH-----------TTSC-----------SEEESCTT
T ss_pred             cccceEEEEeeCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHH-----------cCCc-----------ccccCCHH
Confidence            5678999999999999999999988  6799999999987665321           1110           0234455 


Q ss_pred             CCCCCccEEEEcccCCHHHHHHHHHHHHHh-CCCCcEEEEcCCCCc--HHHHHhhcCC-CCcEEeecC
Q psy9056         295 DPFKNADMVIEAVFEDINIKHQVIKEIEAV-VPPHCVVATNTSAIP--ITKIAAASKR-PDKVRNMGR  358 (359)
Q Consensus       295 ~~l~~aD~Vi~avp~~~~~k~~v~~~l~~~-~~~~~ii~s~ts~~~--~~~l~~~~~~-~~rvig~h~  358 (359)
                      +.+.++|+||+|+|.+.  .+.+++++.++ ++++++|++.++...  .+.+.+.++. ..++++.|+
T Consensus        62 ~~~~~aDvVilavp~~~--~~~v~~~l~~~~l~~~~ivi~~~~~~~~~~~~l~~~l~~~~~~~v~~~P  127 (290)
T 3b1f_A           62 VFAALADVIILAVPIKK--TIDFIKILADLDLKEDVIITDAGSTKYEIVRAAEYYLKDKPVQFVGSHP  127 (290)
T ss_dssp             TTGGGCSEEEECSCHHH--HHHHHHHHHTSCCCTTCEEECCCSCHHHHHHHHHHHHTTSSCEEEEEEE
T ss_pred             HhhcCCCEEEEcCCHHH--HHHHHHHHHhcCCCCCCEEEECCCCchHHHHHHHHhccccCCEEEEeCC
Confidence            46789999999998665  47889999888 888998876554432  2566666654 567888775

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}

Probab=99.31  E-value=2.3e-12  Score=123.84  Aligned_cols=110  Identities=15%  Similarity=0.165  Sum_probs=85.7

Q ss_pred             ccEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CCCC
Q psy9056         220 VKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DPFK  298 (359)
Q Consensus       220 ~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~l~  298 (359)
                      ++||+|||+|+||+++|..|+++|++|++||+++++++.+.+...+  ..+...-        ...+++.+++|. ++++
T Consensus        29 ~mkI~VIGaG~mG~alA~~La~~G~~V~l~~r~~~~~~~i~~~~~~--~~~l~g~--------~l~~~i~~t~d~~ea~~   98 (356)
T 3k96_A           29 KHPIAILGAGSWGTALALVLARKGQKVRLWSYESDHVDEMQAEGVN--NRYLPNY--------PFPETLKAYCDLKASLE   98 (356)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHTTTCCEEEECSCHHHHHHHHHHSSB--TTTBTTC--------CCCTTEEEESCHHHHHT
T ss_pred             CCeEEEECccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcCCC--cccCCCC--------ccCCCeEEECCHHHHHh
Confidence            4689999999999999999999999999999999987765442110  0000000        112356677777 5689


Q ss_pred             CccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCcHH
Q psy9056         299 NADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPIT  341 (359)
Q Consensus       299 ~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~  341 (359)
                      ++|+||+|+|.+  ..+++++++.++++++++|++.++|+...
T Consensus        99 ~aDvVilaVp~~--~~~~vl~~i~~~l~~~~ivvs~~kGi~~~  139 (356)
T 3k96_A           99 GVTDILIVVPSF--AFHEVITRMKPLIDAKTRIAWGTKGLAKG  139 (356)
T ss_dssp             TCCEEEECCCHH--HHHHHHHHHGGGCCTTCEEEECCCSCBTT
T ss_pred             cCCEEEECCCHH--HHHHHHHHHHHhcCCCCEEEEEeCCCCcC
Confidence            999999999865  48899999999999999999999988764

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=99.31  E-value=1.2e-11  Score=115.91  Aligned_cols=123  Identities=14%  Similarity=0.154  Sum_probs=85.4

Q ss_pred             CccEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc---C
Q psy9056         219 PVKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY---D  295 (359)
Q Consensus       219 ~~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~---~  295 (359)
                      .|+||+|||+|.||..+|..|+++|++|++||+++++++...+.   .+.  .. . ..    .....++..+++.   +
T Consensus         2 ~~m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~---g~~--~~-~-~~----~~~~~~~~~~~~~~~~~   70 (316)
T 2ew2_A            2 NAMKIAIAGAGAMGSRLGIMLHQGGNDVTLIDQWPAHIEAIRKN---GLI--AD-F-NG----EEVVANLPIFSPEEIDH   70 (316)
T ss_dssp             --CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHH---CEE--EE-E-TT----EEEEECCCEECGGGCCT
T ss_pred             CCCeEEEECcCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhC---CEE--EE-e-CC----CeeEecceeecchhhcc
Confidence            35699999999999999999999999999999999887765431   000  00 0 00    0001123323322   2


Q ss_pred             CCCCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCcH-HHHHhhcCCCCcEEe
Q psy9056         296 PFKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPI-TKIAAASKRPDKVRN  355 (359)
Q Consensus       296 ~l~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~-~~l~~~~~~~~rvig  355 (359)
                      .++++|+||+|+|.+.  .+++++++.++++++++|++.++++.. +.+.+.++ +.++++
T Consensus        71 ~~~~~d~vi~~v~~~~--~~~v~~~l~~~l~~~~~iv~~~~g~~~~~~l~~~~~-~~~vi~  128 (316)
T 2ew2_A           71 QNEQVDLIIALTKAQQ--LDAMFKAIQPMITEKTYVLCLLNGLGHEDVLEKYVP-KENILV  128 (316)
T ss_dssp             TSCCCSEEEECSCHHH--HHHHHHHHGGGCCTTCEEEECCSSSCTHHHHTTTSC-GGGEEE
T ss_pred             cCCCCCEEEEEecccc--HHHHHHHHHHhcCCCCEEEEecCCCCcHHHHHHHcC-CccEEE
Confidence            3459999999998654  678999999999999999999988877 45666554 346663

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=99.30  E-value=2.2e-12  Score=121.59  Aligned_cols=101  Identities=12%  Similarity=0.077  Sum_probs=76.8

Q ss_pred             CCCCCCccEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccC
Q psy9056         214 GKPQTPVKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLS  293 (359)
Q Consensus       214 ~~~~~~~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~  293 (359)
                      ..+...|++|+|||+|+||.++|..|+++|++|++||+++++++.+.+           .             .+..+++
T Consensus        15 ~~~~~~m~~I~iIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~-----------~-------------g~~~~~~   70 (310)
T 3doj_A           15 VPRGSHMMEVGFLGLGIMGKAMSMNLLKNGFKVTVWNRTLSKCDELVE-----------H-------------GASVCES   70 (310)
T ss_dssp             ---CCCSCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSGGGGHHHHH-----------T-------------TCEECSS
T ss_pred             CcccccCCEEEEECccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHH-----------C-------------CCeEcCC
Confidence            334567889999999999999999999999999999999987665432           1             1334455


Q ss_pred             c-CCCCCccEEEEcccCCHHHHHHHH---HHHHHhCCCCcEEEEcCCCCc
Q psy9056         294 Y-DPFKNADMVIEAVFEDINIKHQVI---KEIEAVVPPHCVVATNTSAIP  339 (359)
Q Consensus       294 ~-~~l~~aD~Vi~avp~~~~~k~~v~---~~l~~~~~~~~ii~s~ts~~~  339 (359)
                      . +.++++|+||+|+|++..++ .++   +++.+.++++++|++.++..+
T Consensus        71 ~~~~~~~aDvvi~~vp~~~~~~-~v~~~~~~l~~~l~~g~~vv~~st~~~  119 (310)
T 3doj_A           71 PAEVIKKCKYTIAMLSDPCAAL-SVVFDKGGVLEQICEGKGYIDMSTVDA  119 (310)
T ss_dssp             HHHHHHHCSEEEECCSSHHHHH-HHHHSTTCGGGGCCTTCEEEECSCCCH
T ss_pred             HHHHHHhCCEEEEEcCCHHHHH-HHHhCchhhhhccCCCCEEEECCCCCH
Confidence            5 45788999999999876654 455   678888889998887665443

>3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A*

Probab=99.30  E-value=3.5e-12  Score=119.79  Aligned_cols=106  Identities=25%  Similarity=0.318  Sum_probs=77.1

Q ss_pred             CccEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CCC
Q psy9056         219 PVKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DPF  297 (359)
Q Consensus       219 ~~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~l  297 (359)
                      .|+||++||.|+||.+||..|+++||+|++||+++++.+....           .|             .+..++. +.+
T Consensus         2 ~M~kIgfIGlG~MG~~mA~~L~~~G~~v~v~dr~~~~~~~l~~-----------~G-------------a~~a~s~~e~~   57 (300)
T 3obb_A            2 HMKQIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQSAVDGLVA-----------AG-------------ASAARSARDAV   57 (300)
T ss_dssp             -CCEEEEECCSTTHHHHHHHHHHTTCEEEEECSSHHHHHHHHH-----------TT-------------CEECSSHHHHH
T ss_pred             CcCEEEEeeehHHHHHHHHHHHhCCCeEEEEcCCHHHHHHHHH-----------cC-------------CEEcCCHHHHH
Confidence            4789999999999999999999999999999999998775432           12             2334444 567


Q ss_pred             CCccEEEEcccCCHHHHHHHHH--HHHHhCCCCcEEEEcCCCCcH--HHHHhhcC
Q psy9056         298 KNADMVIEAVFEDINIKHQVIK--EIEAVVPPHCVVATNTSAIPI--TKIAAASK  348 (359)
Q Consensus       298 ~~aD~Vi~avp~~~~~k~~v~~--~l~~~~~~~~ii~s~ts~~~~--~~l~~~~~  348 (359)
                      ++||+||.|+|++..+...++.  .+.+.+.++++|++.|+.-|-  .++++.+.
T Consensus        58 ~~~dvv~~~l~~~~~v~~V~~~~~g~~~~~~~g~iiId~sT~~p~~~~~~a~~~~  112 (300)
T 3obb_A           58 QGADVVISMLPASQHVEGLYLDDDGLLAHIAPGTLVLECSTIAPTSARKIHAAAR  112 (300)
T ss_dssp             TTCSEEEECCSCHHHHHHHHHSSSSSTTSCCC-CEEEECSCCCHHHHHHHHHHHH
T ss_pred             hcCCceeecCCchHHHHHHHhchhhhhhcCCCCCEEEECCCCCHHHHHHHHHHHH
Confidence            8999999999977765444432  267778889988876665443  24444443

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=99.28  E-value=4.4e-12  Score=125.16  Aligned_cols=111  Identities=21%  Similarity=0.220  Sum_probs=83.1

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHh----HHHHHhhccCChHHHHhhhcccccccCc-C
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTG----LDGAVKRKKMSALDRDRYLASLVGTLSY-D  295 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~----l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~  295 (359)
                      -+|+|||+|+||.++|..|+++||+|++||+++++++.+.+.....    ++..+..        ....+++.+++|+ +
T Consensus         9 ~~~~vIGlG~vG~~~A~~La~~G~~V~~~D~~~~kv~~l~~g~~~~~epgl~~~~~~--------~~~~g~l~~ttd~~e   80 (446)
T 4a7p_A            9 VRIAMIGTGYVGLVSGACFSDFGHEVVCVDKDARKIELLHQNVMPIYEPGLDALVAS--------NVKAGRLSFTTDLAE   80 (446)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHTTTCCSSCCTTHHHHHHH--------HHHTTCEEEESCHHH
T ss_pred             eEEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHhcCCCCccCCCHHHHHHh--------hcccCCEEEECCHHH
Confidence            3899999999999999999999999999999999888765421000    0000000        0012467888888 6


Q ss_pred             CCCCccEEEEcccCCHH---------HHHHHHHHHHHhCCCCcEEEEcCCCCcH
Q psy9056         296 PFKNADMVIEAVFEDIN---------IKHQVIKEIEAVVPPHCVVATNTSAIPI  340 (359)
Q Consensus       296 ~l~~aD~Vi~avp~~~~---------~k~~v~~~l~~~~~~~~ii~s~ts~~~~  340 (359)
                      ++++||+||+|||.+.+         ..+++++.+.++++++++|++.| ++++
T Consensus        81 a~~~aDvvii~Vptp~~~~~~~~Dl~~v~~v~~~i~~~l~~g~iVV~~S-Tv~p  133 (446)
T 4a7p_A           81 GVKDADAVFIAVGTPSRRGDGHADLSYVFAAAREIAENLTKPSVIVTKS-TVPV  133 (446)
T ss_dssp             HHTTCSEEEECCCCCBCTTTCCBCTHHHHHHHHHHHHSCCSCCEEEECS-CCCT
T ss_pred             HHhcCCEEEEEcCCCCccccCCccHHHHHHHHHHHHHhcCCCCEEEEeC-CCCc
Confidence            78999999999887642         47888899999999999888765 4544

>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}

Probab=99.27  E-value=1.9e-11  Score=121.47  Aligned_cols=110  Identities=17%  Similarity=0.219  Sum_probs=82.1

Q ss_pred             CCccEEEEECCCcchHHHHHHHHHC-CC-eeEEecCCHH----HHHHHHHHH------HHhHHHHHhhccCChHHHHhhh
Q psy9056         218 TPVKTVAVLGAGLMGAGIAHVTVDK-GY-NTIVKDSFEK----GLARGLGQI------KTGLDGAVKRKKMSALDRDRYL  285 (359)
Q Consensus       218 ~~~~kI~IIG~G~mG~~iA~~l~~~-G~-~V~l~d~~~~----~l~~~~~~~------~~~l~~~~~~~~~~~~~~~~~~  285 (359)
                      ++++||+|||+|+||.++|..|+++ |+ +|++||++++    +++.+.+..      +..++..+...        ...
T Consensus        16 ~~~mkIaVIGlG~mG~~lA~~la~~~G~~~V~~~D~~~~~~~~kv~~l~~g~~~i~~~e~gl~~l~~~~--------~~~   87 (478)
T 3g79_A           16 GPIKKIGVLGMGYVGIPAAVLFADAPCFEKVLGFQRNSKSSGYKIEMLNRGESPLKGEEPGLEELIGKV--------VKA   87 (478)
T ss_dssp             CSCCEEEEECCSTTHHHHHHHHHHSTTCCEEEEECCCCTTTTTHHHHHTTTCCCSSCCGGGHHHHHHHH--------HHT
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHHhCCCCeEEEEECChhHhHHHHHHHHhcCCCccccCCCHHHHHHhh--------ccc
Confidence            5668999999999999999999999 99 9999999999    777654311      01111111100        013


Q ss_pred             cccccccCcCCCCCccEEEEcccCCH----------HHHHHHHHHHHHhCCCCcEEEEcC
Q psy9056         286 ASLVGTLSYDPFKNADMVIEAVFEDI----------NIKHQVIKEIEAVVPPHCVVATNT  335 (359)
Q Consensus       286 ~~i~~~~~~~~l~~aD~Vi~avp~~~----------~~k~~v~~~l~~~~~~~~ii~s~t  335 (359)
                      +++.++++.+++++||+||+|+|++.          .....+.+.|.++++++++|+..|
T Consensus        88 g~l~~ttd~ea~~~aDvViiaVptp~~~~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~~S  147 (478)
T 3g79_A           88 GKFECTPDFSRISELDAVTLAIQTPFANPKDLEPDFSALIDGIRNVGKYLKPGMLVVLES  147 (478)
T ss_dssp             TCEEEESCGGGGGGCSEEEECCCCCCCSSCCSSCCCHHHHHHHHHHHHHCCTTCEEEECS
T ss_pred             CCeEEeCcHHHHhcCCEEEEecCCchhccCCccccHHHHHHHHHHHHhhcCCCcEEEEeC
Confidence            56888888888999999999998763          345677788999999999887544

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*

Probab=99.26  E-value=1.1e-11  Score=123.46  Aligned_cols=111  Identities=16%  Similarity=0.203  Sum_probs=83.4

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHH----hHHHHHhhccCChHHHHhhhcccccccCc-C
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKT----GLDGAVKRKKMSALDRDRYLASLVGTLSY-D  295 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~----~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~  295 (359)
                      +||+|||+|+||.++|..|+++|++|++||+++++++.+.+....    .++..+..        .....++.++++. +
T Consensus         9 ~~I~VIG~G~vG~~lA~~la~~G~~V~~~d~~~~~v~~l~~~~~~i~e~gl~~~l~~--------~~~~~~l~~ttd~~~   80 (478)
T 2y0c_A            9 MNLTIIGSGSVGLVTGACLADIGHDVFCLDVDQAKIDILNNGGVPIHEPGLKEVIAR--------NRSAGRLRFSTDIEA   80 (478)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHH--------HHHTTCEEEECCHHH
T ss_pred             ceEEEECcCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHH--------hcccCCEEEECCHHH
Confidence            599999999999999999999999999999999988876542100    00000000        0012357788888 5


Q ss_pred             CCCCccEEEEcccC--------CHHHHHHHHHHHHHhCCCCcEEEEcCCCCcH
Q psy9056         296 PFKNADMVIEAVFE--------DINIKHQVIKEIEAVVPPHCVVATNTSAIPI  340 (359)
Q Consensus       296 ~l~~aD~Vi~avp~--------~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~  340 (359)
                      .+++||+||+|+|+        +...++.++++|.++++++++|++.+ ++++
T Consensus        81 a~~~aDvviiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~~~iVV~~S-Tv~~  132 (478)
T 2y0c_A           81 AVAHGDVQFIAVGTPPDEDGSADLQYVLAAARNIGRYMTGFKVIVDKS-TVPV  132 (478)
T ss_dssp             HHHHCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHCCSCEEEEECS-CCCT
T ss_pred             HhhcCCEEEEEeCCCcccCCCccHHHHHHHHHHHHHhcCCCCEEEEeC-CcCC
Confidence            68899999999998        34678899999999999999887654 6544

>1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A*

Probab=99.26  E-value=1.8e-11  Score=112.09  Aligned_cols=107  Identities=17%  Similarity=0.207  Sum_probs=82.7

Q ss_pred             cEEEEECCCcchHHHHHHHHHCC-CeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CCCC
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKG-YNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DPFK  298 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G-~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~l~  298 (359)
                      ++|+|||+|.||..++..|+++| ++|++||+++++++...+.+                       .+..+++. +.+ 
T Consensus         1 m~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~~~~-----------------------g~~~~~~~~~~~-   56 (263)
T 1yqg_A            1 MNVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGAEKRERLEKEL-----------------------GVETSATLPELH-   56 (263)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSCEEEEECSSHHHHHHHHHHT-----------------------CCEEESSCCCCC-
T ss_pred             CEEEEECchHHHHHHHHHHHHCCCCeEEEECCCHHHHHHHHHhc-----------------------CCEEeCCHHHHh-
Confidence            37999999999999999999999 99999999998876543210                       13334455 567 


Q ss_pred             CccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCcHHHHHhhcCCCCcEEee
Q psy9056         299 NADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPITKIAAASKRPDKVRNM  356 (359)
Q Consensus       299 ~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~rvig~  356 (359)
                      ++|+||+|+|  ....+.+++++.+  + +++|++.+++++++.+.+.++.+.+++..
T Consensus        57 ~~D~vi~~v~--~~~~~~v~~~l~~--~-~~ivv~~~~g~~~~~l~~~~~~~~~~v~~  109 (263)
T 1yqg_A           57 SDDVLILAVK--PQDMEAACKNIRT--N-GALVLSVAAGLSVGTLSRYLGGTRRIVRV  109 (263)
T ss_dssp             TTSEEEECSC--HHHHHHHHTTCCC--T-TCEEEECCTTCCHHHHHHHTTSCCCEEEE
T ss_pred             cCCEEEEEeC--chhHHHHHHHhcc--C-CCEEEEecCCCCHHHHHHHcCCCCcEEEE
Confidence            9999999998  4445677766654  4 88999999999998888887755566654

>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}

Probab=99.26  E-value=2.3e-12  Score=121.70  Aligned_cols=97  Identities=16%  Similarity=0.143  Sum_probs=74.1

Q ss_pred             CCccEEEEECCCcchHHHHHHHHHCCC-eeEEecCC--HHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc
Q psy9056         218 TPVKTVAVLGAGLMGAGIAHVTVDKGY-NTIVKDSF--EKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY  294 (359)
Q Consensus       218 ~~~~kI~IIG~G~mG~~iA~~l~~~G~-~V~l~d~~--~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~  294 (359)
                      +.+++|+|||+|+||.++|..|+++|+ +|++||++  +++.+....           .             .+..+++.
T Consensus        22 ~~~~~I~iIG~G~mG~~~A~~L~~~G~~~V~~~dr~~~~~~~~~~~~-----------~-------------g~~~~~~~   77 (312)
T 3qsg_A           22 SNAMKLGFIGFGEAASAIASGLRQAGAIDMAAYDAASAESWRPRAEE-----------L-------------GVSCKASV   77 (312)
T ss_dssp             ---CEEEEECCSHHHHHHHHHHHHHSCCEEEEECSSCHHHHHHHHHH-----------T-------------TCEECSCH
T ss_pred             CCCCEEEEECccHHHHHHHHHHHHCCCCeEEEEcCCCCHHHHHHHHH-----------C-------------CCEEeCCH
Confidence            346799999999999999999999999 99999997  454443221           1             23344454


Q ss_pred             -CCCCCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCcH
Q psy9056         295 -DPFKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPI  340 (359)
Q Consensus       295 -~~l~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~  340 (359)
                       +.++++|+||+|+|.+...  ++++++.+.++++++|+++++..+.
T Consensus        78 ~e~~~~aDvVi~~vp~~~~~--~~~~~l~~~l~~~~ivvd~st~~~~  122 (312)
T 3qsg_A           78 AEVAGECDVIFSLVTAQAAL--EVAQQAGPHLCEGALYADFTSCSPA  122 (312)
T ss_dssp             HHHHHHCSEEEECSCTTTHH--HHHHHHGGGCCTTCEEEECCCCCHH
T ss_pred             HHHHhcCCEEEEecCchhHH--HHHHhhHhhcCCCCEEEEcCCCCHH
Confidence             4578899999999998855  5778999999999999877765543

>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis}

Probab=99.26  E-value=1.1e-11  Score=113.83  Aligned_cols=103  Identities=14%  Similarity=0.184  Sum_probs=83.6

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCCe-eEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CCCC
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGYN-TIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DPFK  298 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~~-V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~l~  298 (359)
                      ++|+|||+|.||..++..+.++|++ |.+||+++++++...+.+                       .+...+++ +.++
T Consensus        11 m~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~~~~~~~~~~~~~~-----------------------g~~~~~~~~~~~~   67 (266)
T 3d1l_A           11 TPIVLIGAGNLATNLAKALYRKGFRIVQVYSRTEESARELAQKV-----------------------EAEYTTDLAEVNP   67 (266)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSHHHHHHHHHHT-----------------------TCEEESCGGGSCS
T ss_pred             CeEEEEcCCHHHHHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHc-----------------------CCceeCCHHHHhc
Confidence            5899999999999999999999999 999999998876543211                       12334455 5578


Q ss_pred             CccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCcHHHHHhhcC
Q psy9056         299 NADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPITKIAAASK  348 (359)
Q Consensus       299 ~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~  348 (359)
                      ++|+||+|+|++.  ..++++++.+.++++++|++++++++.+.+.+.+.
T Consensus        68 ~~Dvvi~av~~~~--~~~v~~~l~~~~~~~~ivv~~s~~~~~~~l~~~~~  115 (266)
T 3d1l_A           68 YAKLYIVSLKDSA--FAELLQGIVEGKREEALMVHTAGSIPMNVWEGHVP  115 (266)
T ss_dssp             CCSEEEECCCHHH--HHHHHHHHHTTCCTTCEEEECCTTSCGGGSTTTCS
T ss_pred             CCCEEEEecCHHH--HHHHHHHHHhhcCCCcEEEECCCCCchHHHHHHHH
Confidence            9999999999774  47888999888889999999999999877665554

>4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans}

Probab=99.25  E-value=5.7e-12  Score=118.19  Aligned_cols=95  Identities=18%  Similarity=0.248  Sum_probs=68.8

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CCCCC
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DPFKN  299 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~l~~  299 (359)
                      +||||||.|+||.+||..|+++||+|++||+++++.+...           +.             .....++. +.++.
T Consensus         6 ~kIgfIGLG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~-----------~~-------------G~~~~~s~~e~~~~   61 (297)
T 4gbj_A            6 EKIAFLGLGNLGTPIAEILLEAGYELVVWNRTASKAEPLT-----------KL-------------GATVVENAIDAITP   61 (297)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEC-------CTTT-----------TT-------------TCEECSSGGGGCCT
T ss_pred             CcEEEEecHHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHH-----------Hc-------------CCeEeCCHHHHHhc
Confidence            4899999999999999999999999999999998755421           11             13344454 66899


Q ss_pred             ccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCc
Q psy9056         300 ADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIP  339 (359)
Q Consensus       300 aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~  339 (359)
                      +|+||.|+|.+..+...+...+...+.++++|++.++..|
T Consensus        62 ~dvvi~~l~~~~~~~~v~~~~~~~~~~~~~iiid~sT~~p  101 (297)
T 4gbj_A           62 GGIVFSVLADDAAVEELFSMELVEKLGKDGVHVSMSTISP  101 (297)
T ss_dssp             TCEEEECCSSHHHHHHHSCHHHHHHHCTTCEEEECSCCCH
T ss_pred             CCceeeeccchhhHHHHHHHHHHhhcCCCeEEEECCCCCh
Confidence            9999999998877666556778888889998887665544

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=99.25  E-value=2e-11  Score=120.77  Aligned_cols=108  Identities=17%  Similarity=0.144  Sum_probs=81.3

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHh----HHHHHhhccCChHHHHhhhcccccccCcC-
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTG----LDGAVKRKKMSALDRDRYLASLVGTLSYD-  295 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~----l~~~~~~~~~~~~~~~~~~~~i~~~~~~~-  295 (359)
                      +||+|||+|+||.++|..|+++|++|++||+++++++.+.+.....    ++..+..        .....++.++++++ 
T Consensus         3 mkI~VIG~G~vG~~lA~~La~~G~~V~~~D~~~~~v~~l~~g~~~i~e~gl~~~l~~--------~~~~~~l~~t~d~~e   74 (450)
T 3gg2_A            3 LDIAVVGIGYVGLVSATCFAELGANVRCIDTDRNKIEQLNSGTIPIYEPGLEKMIAR--------NVKAGRLRFGTEIEQ   74 (450)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTCSCCCSTTHHHHHHH--------HHHTTSEEEESCHHH
T ss_pred             CEEEEECcCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHcCCCcccCCCHHHHHHh--------hcccCcEEEECCHHH
Confidence            4899999999999999999999999999999999888765421100    0000000        00124577888884 


Q ss_pred             CCCCccEEEEcccCCHH--------HHHHHHHHHHHhCCCCcEEEEcCC
Q psy9056         296 PFKNADMVIEAVFEDIN--------IKHQVIKEIEAVVPPHCVVATNTS  336 (359)
Q Consensus       296 ~l~~aD~Vi~avp~~~~--------~k~~v~~~l~~~~~~~~ii~s~ts  336 (359)
                      .+++||+||+|+|.+.+        ..+.++++|.++++++++|++.|+
T Consensus        75 a~~~aDvViiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~g~iVV~~ST  123 (450)
T 3gg2_A           75 AVPEADIIFIAVGTPAGEDGSADMSYVLDAARSIGRAMSRYILIVTKST  123 (450)
T ss_dssp             HGGGCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHCCSCEEEEECSC
T ss_pred             HHhcCCEEEEEcCCCcccCCCcChHHHHHHHHHHHhhCCCCCEEEEeee
Confidence            58999999999998732        578889999999999998877664

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=99.24  E-value=1.9e-11  Score=114.81  Aligned_cols=96  Identities=19%  Similarity=0.238  Sum_probs=74.4

Q ss_pred             ccEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhccccc-ccCc-CCC
Q psy9056         220 VKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVG-TLSY-DPF  297 (359)
Q Consensus       220 ~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~-~~~~-~~l  297 (359)
                      .+||+|||+|+||.++|..|+++|++|++||+++++++.+.+           .|             ... +++. +.+
T Consensus         7 ~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~-----------~g-------------~~~~~~~~~e~~   62 (303)
T 3g0o_A            7 DFHVGIVGLGSMGMGAARSCLRAGLSTWGADLNPQACANLLA-----------EG-------------ACGAAASAREFA   62 (303)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHH-----------TT-------------CSEEESSSTTTT
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHH-----------cC-------------CccccCCHHHHH
Confidence            368999999999999999999999999999999998776432           11             222 4555 567


Q ss_pred             CCccEEEEcccCCHHHHHHHH--HHHHHhCCCCcEEEEcCCCCc
Q psy9056         298 KNADMVIEAVFEDINIKHQVI--KEIEAVVPPHCVVATNTSAIP  339 (359)
Q Consensus       298 ~~aD~Vi~avp~~~~~k~~v~--~~l~~~~~~~~ii~s~ts~~~  339 (359)
                      +++|+||+|+|++..++..++  +++.+.++++++|++.++..+
T Consensus        63 ~~aDvvi~~vp~~~~~~~v~~~~~~l~~~l~~g~ivv~~st~~~  106 (303)
T 3g0o_A           63 GVVDALVILVVNAAQVRQVLFGEDGVAHLMKPGSAVMVSSTISS  106 (303)
T ss_dssp             TTCSEEEECCSSHHHHHHHHC--CCCGGGSCTTCEEEECSCCCH
T ss_pred             hcCCEEEEECCCHHHHHHHHhChhhHHhhCCCCCEEEecCCCCH
Confidence            999999999998765443333  667888889999887766544

>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}

Probab=99.24  E-value=5.4e-12  Score=113.12  Aligned_cols=110  Identities=19%  Similarity=0.206  Sum_probs=83.1

Q ss_pred             CCccEEEEECCCcchHHHHHHHHHCCCeeEE-ecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhccccc-ccCcC
Q psy9056         218 TPVKTVAVLGAGLMGAGIAHVTVDKGYNTIV-KDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVG-TLSYD  295 (359)
Q Consensus       218 ~~~~kI~IIG~G~mG~~iA~~l~~~G~~V~l-~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~-~~~~~  295 (359)
                      |.|+||+|||+|+||..++..|+++|++|++ ||+++++++.......                       +.. .++.+
T Consensus        21 m~mmkI~IIG~G~mG~~la~~l~~~g~~V~~v~~r~~~~~~~l~~~~g-----------------------~~~~~~~~~   77 (220)
T 4huj_A           21 QSMTTYAIIGAGAIGSALAERFTAAQIPAIIANSRGPASLSSVTDRFG-----------------------ASVKAVELK   77 (220)
T ss_dssp             GGSCCEEEEECHHHHHHHHHHHHHTTCCEEEECTTCGGGGHHHHHHHT-----------------------TTEEECCHH
T ss_pred             hcCCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCCHHHHHHHHHHhC-----------------------CCcccChHH
Confidence            5678999999999999999999999999999 9999988766433211                       111 23335


Q ss_pred             CCCCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCC--------------cHHHHHhhcCCCCcEEe
Q psy9056         296 PFKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAI--------------PITKIAAASKRPDKVRN  355 (359)
Q Consensus       296 ~l~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~--------------~~~~l~~~~~~~~rvig  355 (359)
                      .+.++|+||+|+|.+.  ..++++++.+ + ++++|++.++++              ..+.+++.++ ..+++.
T Consensus        78 ~~~~aDvVilavp~~~--~~~v~~~l~~-~-~~~ivi~~~~g~~~~~~~~~~~~~~~~~~~l~~~l~-~~~vv~  146 (220)
T 4huj_A           78 DALQADVVILAVPYDS--IADIVTQVSD-W-GGQIVVDASNAIDFPAFKPRDLGGRLSTEIVSELVP-GAKVVK  146 (220)
T ss_dssp             HHTTSSEEEEESCGGG--HHHHHTTCSC-C-TTCEEEECCCCBCTTTCCBCCCTTCCHHHHHHHHST-TCEEEE
T ss_pred             HHhcCCEEEEeCChHH--HHHHHHHhhc-c-CCCEEEEcCCCCCcccccccccCCCcHHHHHHHHCC-CCCEEE
Confidence            5789999999998554  6788887766 4 578999999888              4567777775 345443

>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A

Probab=99.24  E-value=9.4e-12  Score=116.94  Aligned_cols=120  Identities=15%  Similarity=0.204  Sum_probs=85.3

Q ss_pred             CCccEEEEECCCcchHHHHHHHHHCCC--eeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcC
Q psy9056         218 TPVKTVAVLGAGLMGAGIAHVTVDKGY--NTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYD  295 (359)
Q Consensus       218 ~~~~kI~IIG~G~mG~~iA~~l~~~G~--~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~  295 (359)
                      ..++||+|||+|.||.++|..++.+|+  +|+++|++++....+. .+.+     .            ...+++.++|++
T Consensus        12 ~~~~kV~ViGaG~vG~~~a~~l~~~g~~~ev~L~Di~~~~~g~a~-dl~~-----~------------~~~~i~~t~d~~   73 (303)
T 2i6t_A           12 KTVNKITVVGGGELGIACTLAISAKGIADRLVLLDLSEGTKGATM-DLEI-----F------------NLPNVEISKDLS   73 (303)
T ss_dssp             --CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECCC-----CHH-HHHH-----H------------TCTTEEEESCGG
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCcchHHHHH-HHhh-----h------------cCCCeEEeCCHH
Confidence            445899999999999999999999999  9999999986322222 1111     0            002566677888


Q ss_pred             CCCCccEEEEcc-------------cCCHHHHHHHHHHHHHhCCCCcEEE--EcCCCCcHHHHHhhcCC-CCcEEee
Q psy9056         296 PFKNADMVIEAV-------------FEDINIKHQVIKEIEAVVPPHCVVA--TNTSAIPITKIAAASKR-PDKVRNM  356 (359)
Q Consensus       296 ~l~~aD~Vi~av-------------p~~~~~k~~v~~~l~~~~~~~~ii~--s~ts~~~~~~l~~~~~~-~~rvig~  356 (359)
                      ++++||+||+++             .++..+++++++++.+++ ++++|+  ||+..+-.+.+....+. |.||+|+
T Consensus        74 ~l~~aD~Vi~aag~~~pG~tR~dl~~~n~~i~~~i~~~i~~~~-p~a~iiv~sNP~~~~t~~~~~~~~~p~~rviG~  149 (303)
T 2i6t_A           74 ASAHSKVVIFTVNSLGSSQSYLDVVQSNVDMFRALVPALGHYS-QHSVLLVASQPVEIMTYVTWKLSTFPANRVIGI  149 (303)
T ss_dssp             GGTTCSEEEECCCC----CCHHHHHHHHHHHHHHHHHHHHHHT-TTCEEEECSSSHHHHHHHHHHHHCCCGGGEEEC
T ss_pred             HHCCCCEEEEcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEcCChHHHHHHHHHHhcCCCHHHeeCC
Confidence            899999999997             888999999999999998 666654  44434333444444443 6899997

>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}

Probab=99.23  E-value=2.2e-11  Score=115.12  Aligned_cols=121  Identities=12%  Similarity=0.105  Sum_probs=90.2

Q ss_pred             CccEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcCCCC
Q psy9056         219 PVKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPFK  298 (359)
Q Consensus       219 ~~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~  298 (359)
                      .++||+|||+|.||+.+|..|+++|++|++| +++++++...+.-   +......+        ....++..+++.+.+.
T Consensus        18 ~~~kI~IiGaGa~G~~~a~~L~~~G~~V~l~-~~~~~~~~i~~~g---~~~~~~~~--------~~~~~~~~~~~~~~~~   85 (318)
T 3hwr_A           18 QGMKVAIMGAGAVGCYYGGMLARAGHEVILI-ARPQHVQAIEATG---LRLETQSF--------DEQVKVSASSDPSAVQ   85 (318)
T ss_dssp             --CEEEEESCSHHHHHHHHHHHHTTCEEEEE-CCHHHHHHHHHHC---EEEECSSC--------EEEECCEEESCGGGGT
T ss_pred             cCCcEEEECcCHHHHHHHHHHHHCCCeEEEE-EcHhHHHHHHhCC---eEEEcCCC--------cEEEeeeeeCCHHHcC
Confidence            3579999999999999999999999999999 9988877654310   00000000        1112445566666678


Q ss_pred             CccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCcH-HHHHhhcCCCCcEEe
Q psy9056         299 NADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPI-TKIAAASKRPDKVRN  355 (359)
Q Consensus       299 ~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~-~~l~~~~~~~~rvig  355 (359)
                      ++|+||+|+|...  .+++++++.++++++++|++.++|+.. +.+.+.++  .++++
T Consensus        86 ~~D~vilavk~~~--~~~~l~~l~~~l~~~~~iv~~~nGi~~~~~l~~~~~--~~vl~  139 (318)
T 3hwr_A           86 GADLVLFCVKSTD--TQSAALAMKPALAKSALVLSLQNGVENADTLRSLLE--QEVAA  139 (318)
T ss_dssp             TCSEEEECCCGGG--HHHHHHHHTTTSCTTCEEEEECSSSSHHHHHHHHCC--SEEEE
T ss_pred             CCCEEEEEccccc--HHHHHHHHHHhcCCCCEEEEeCCCCCcHHHHHHHcC--CcEEE
Confidence            9999999999875  678999999999999999999999998 46666665  55554

>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}

Probab=99.22  E-value=7.1e-12  Score=116.69  Aligned_cols=96  Identities=15%  Similarity=0.116  Sum_probs=74.3

Q ss_pred             ccEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CCCC
Q psy9056         220 VKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DPFK  298 (359)
Q Consensus       220 ~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~l~  298 (359)
                      |++|+|||+|+||.++|..|+++|++|++||+++++++...+.                        .+..+++. +.++
T Consensus         1 M~~I~iiG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~------------------------g~~~~~~~~~~~~   56 (287)
T 3pdu_A            1 MTTYGFLGLGIMGGPMAANLVRAGFDVTVWNRNPAKCAPLVAL------------------------GARQASSPAEVCA   56 (287)
T ss_dssp             CCCEEEECCSTTHHHHHHHHHHHTCCEEEECSSGGGGHHHHHH------------------------TCEECSCHHHHHH
T ss_pred             CCeEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHC------------------------CCeecCCHHHHHH
Confidence            5789999999999999999999999999999999876654321                        13344455 4568


Q ss_pred             CccEEEEcccCCHHHHHHHH--HHHHHhCCCCcEEEEcCCCCc
Q psy9056         299 NADMVIEAVFEDINIKHQVI--KEIEAVVPPHCVVATNTSAIP  339 (359)
Q Consensus       299 ~aD~Vi~avp~~~~~k~~v~--~~l~~~~~~~~ii~s~ts~~~  339 (359)
                      ++|+||+|+|++..++..++  +++.+.++++++|++.++..+
T Consensus        57 ~advvi~~v~~~~~~~~v~~~~~~l~~~l~~g~~vv~~st~~~   99 (287)
T 3pdu_A           57 ACDITIAMLADPAAAREVCFGANGVLEGIGGGRGYIDMSTVDD   99 (287)
T ss_dssp             HCSEEEECCSSHHHHHHHHHSTTCGGGTCCTTCEEEECSCCCH
T ss_pred             cCCEEEEEcCCHHHHHHHHcCchhhhhcccCCCEEEECCCCCH
Confidence            89999999998765443333  678888888998887766544

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6

Probab=99.22  E-value=3.7e-11  Score=111.11  Aligned_cols=113  Identities=13%  Similarity=0.146  Sum_probs=80.1

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcCCCCCc
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPFKNA  300 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~a  300 (359)
                      ++|+|||+|.||.+++..+.++|++|++||+++++++.+.+           .+..           ...+++.+.+.++
T Consensus         1 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~-----------~g~~-----------~~~~~~~~~~~~~   58 (279)
T 2f1k_A            1 MKIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTCEKAVE-----------RQLV-----------DEAGQDLSLLQTA   58 (279)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHH-----------TTSC-----------SEEESCGGGGTTC
T ss_pred             CEEEEEcCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHh-----------CCCC-----------ccccCCHHHhCCC
Confidence            37999999999999999999999999999999987665321           1110           0123444333889


Q ss_pred             cEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCcHHHHHhhcCCCCcEEeecC
Q psy9056         301 DMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPITKIAAASKRPDKVRNMGR  358 (359)
Q Consensus       301 D~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~rvig~h~  358 (359)
                      |+||+|+|.+  ....+++++.++++++++|++. ++++...+........++++.|+
T Consensus        59 D~vi~av~~~--~~~~~~~~l~~~~~~~~~vv~~-~~~~~~~~~~~~~~~~~~~~~~p  113 (279)
T 2f1k_A           59 KIIFLCTPIQ--LILPTLEKLIPHLSPTAIVTDV-ASVKTAIAEPASQLWSGFIGGHP  113 (279)
T ss_dssp             SEEEECSCHH--HHHHHHHHHGGGSCTTCEEEEC-CSCCHHHHHHHHHHSTTCEEEEE
T ss_pred             CEEEEECCHH--HHHHHHHHHHhhCCCCCEEEEC-CCCcHHHHHHHHHHhCCEeecCc
Confidence            9999999865  4678899999999999988876 44444333222211127777764

>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032}

Probab=99.22  E-value=1.9e-11  Score=116.58  Aligned_cols=112  Identities=11%  Similarity=0.135  Sum_probs=82.1

Q ss_pred             CccEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CCC
Q psy9056         219 PVKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DPF  297 (359)
Q Consensus       219 ~~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~l  297 (359)
                      .+++|+|||+|.||.++|..|.++|++|++||++++.++.+..           .|             +..+++. +.+
T Consensus         7 ~~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~~~~~~a~~-----------~G-------------~~~~~~~~e~~   62 (341)
T 3ktd_A            7 ISRPVCILGLGLIGGSLLRDLHAANHSVFGYNRSRSGAKSAVD-----------EG-------------FDVSADLEATL   62 (341)
T ss_dssp             CSSCEEEECCSHHHHHHHHHHHHTTCCEEEECSCHHHHHHHHH-----------TT-------------CCEESCHHHHH
T ss_pred             CCCEEEEEeecHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH-----------cC-------------CeeeCCHHHHH
Confidence            4579999999999999999999999999999999987765432           11             1222333 223


Q ss_pred             ----CCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCc--HHHHHhhcCCCCcEEeecC
Q psy9056         298 ----KNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIP--ITKIAAASKRPDKVRNMGR  358 (359)
Q Consensus       298 ----~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~--~~~l~~~~~~~~rvig~h~  358 (359)
                          +++|+||+|+|.  .....+++++.++ +++++|++.+|...  ++.+.+... ..++++.|+
T Consensus        63 ~~a~~~aDlVilavP~--~~~~~vl~~l~~~-~~~~iv~Dv~Svk~~i~~~~~~~~~-~~~~v~~HP  125 (341)
T 3ktd_A           63 QRAAAEDALIVLAVPM--TAIDSLLDAVHTH-APNNGFTDVVSVKTAVYDAVKARNM-QHRYVGSHP  125 (341)
T ss_dssp             HHHHHTTCEEEECSCH--HHHHHHHHHHHHH-CTTCCEEECCSCSHHHHHHHHHTTC-GGGEECEEE
T ss_pred             HhcccCCCEEEEeCCH--HHHHHHHHHHHcc-CCCCEEEEcCCCChHHHHHHHHhCC-CCcEecCCc
Confidence                357999999994  4477889999887 78888876655432  345555443 468999986

>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A*

Probab=99.22  E-value=4.1e-11  Score=112.98  Aligned_cols=123  Identities=18%  Similarity=0.258  Sum_probs=87.1

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCC-eeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcCCCCC
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGY-NTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPFKN  299 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~-~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~  299 (359)
                      +||+|||+|+||.+++..++..|+ +|+++|+++++++.....+.+....            .....+++.+++++++++
T Consensus         3 ~kI~VIGaG~vG~~~a~~la~~g~~~v~L~Di~~~~~~g~~~dl~~~~~~------------~~~~~~i~~t~d~~a~~~   70 (309)
T 1ur5_A            3 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEASPI------------EGFDVRVTGTNNYADTAN   70 (309)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSSSHHHHHHHHHHTTHHH------------HTCCCCEEEESCGGGGTT
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCCeEEEEeCCccHHHHHHHhHHHhHhh------------cCCCeEEEECCCHHHHCC
Confidence            589999999999999999999997 9999999998876433333322110            001124666678888999


Q ss_pred             ccEEEEcc--------------cCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCc--HHHHHhhcC-CCCcEEee
Q psy9056         300 ADMVIEAV--------------FEDINIKHQVIKEIEAVVPPHCVVATNTSAIP--ITKIAAASK-RPDKVRNM  356 (359)
Q Consensus       300 aD~Vi~av--------------p~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~--~~~l~~~~~-~~~rvig~  356 (359)
                      ||+||+++              .++..+++++++.+.+++ ++++|+..|+...  ...+....+ ++.|++|+
T Consensus        71 aD~Vi~a~g~p~~~g~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~vi~~tNPv~~~t~~~~~~~~~~~~rviG~  143 (309)
T 1ur5_A           71 SDVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPLS-PNAVIIMVNNPLDAMTYLAAEVSGFPKERVIGQ  143 (309)
T ss_dssp             CSEEEECCCC--------CHHHHHHHHHHHHHHHHHGGGC-TTCEEEECCSSHHHHHHHHHHHHCCCGGGEEEC
T ss_pred             CCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEEcCCchHHHHHHHHHHcCCCHHHEEEC
Confidence            99999997              334577888999999997 6776644444332  233334333 35799997

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}

Probab=99.21  E-value=1.5e-11  Score=114.43  Aligned_cols=95  Identities=8%  Similarity=0.103  Sum_probs=74.1

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CCCCC
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DPFKN  299 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~l~~  299 (359)
                      +||+|||+|.||.++|..|+++|++|++||+++++++...+           .             .+..+++. +.+++
T Consensus         2 ~~i~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~-----------~-------------g~~~~~~~~~~~~~   57 (287)
T 3pef_A            2 QKFGFIGLGIMGSAMAKNLVKAGCSVTIWNRSPEKAEELAA-----------L-------------GAERAATPCEVVES   57 (287)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSGGGGHHHHH-----------T-------------TCEECSSHHHHHHH
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHH-----------C-------------CCeecCCHHHHHhc
Confidence            58999999999999999999999999999999987665432           0             23445555 45788


Q ss_pred             ccEEEEcccCCHHHHHHHH--HHHHHhCCCCcEEEEcCCCCc
Q psy9056         300 ADMVIEAVFEDINIKHQVI--KEIEAVVPPHCVVATNTSAIP  339 (359)
Q Consensus       300 aD~Vi~avp~~~~~k~~v~--~~l~~~~~~~~ii~s~ts~~~  339 (359)
                      +|+||+|+|++..++..++  +++.+.++++++|++.++..+
T Consensus        58 aDvvi~~vp~~~~~~~v~~~~~~l~~~l~~~~~vi~~st~~~   99 (287)
T 3pef_A           58 CPVTFAMLADPAAAEEVCFGKHGVLEGIGEGRGYVDMSTVDP   99 (287)
T ss_dssp             CSEEEECCSSHHHHHHHHHSTTCHHHHCCTTCEEEECSCCCH
T ss_pred             CCEEEEEcCCHHHHHHHHcCcchHhhcCCCCCEEEeCCCCCH
Confidence            9999999997665544443  778888999998887755433

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=99.21  E-value=2.3e-11  Score=116.96  Aligned_cols=103  Identities=14%  Similarity=0.154  Sum_probs=79.4

Q ss_pred             CccEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CCC
Q psy9056         219 PVKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DPF  297 (359)
Q Consensus       219 ~~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~l  297 (359)
                      ..++|+|||+|.||..+|..|+++|++|++||+++++++.+.+           .             .+...++. +.+
T Consensus        21 ~~mkIgiIGlG~mG~~~A~~L~~~G~~V~v~dr~~~~~~~l~~-----------~-------------g~~~~~s~~e~~   76 (358)
T 4e21_A           21 QSMQIGMIGLGRMGADMVRRLRKGGHECVVYDLNVNAVQALER-----------E-------------GIAGARSIEEFC   76 (358)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHT-----------T-------------TCBCCSSHHHHH
T ss_pred             cCCEEEEECchHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHH-----------C-------------CCEEeCCHHHHH
Confidence            3479999999999999999999999999999999988765432           1             13334444 345


Q ss_pred             CCc---cEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCcHH--HHHhhc
Q psy9056         298 KNA---DMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPIT--KIAAAS  347 (359)
Q Consensus       298 ~~a---D~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~--~l~~~~  347 (359)
                      +++   |+||+|+|.+  ..+.+++++.+.++++++|++.+++.+..  .+.+.+
T Consensus        77 ~~a~~~DvVi~~vp~~--~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l  129 (358)
T 4e21_A           77 AKLVKPRVVWLMVPAA--VVDSMLQRMTPLLAANDIVIDGGNSHYQDDIRRADQM  129 (358)
T ss_dssp             HHSCSSCEEEECSCGG--GHHHHHHHHGGGCCTTCEEEECSSCCHHHHHHHHHHH
T ss_pred             hcCCCCCEEEEeCCHH--HHHHHHHHHHhhCCCCCEEEeCCCCChHHHHHHHHHH
Confidence            556   9999999988  46788899999999999999888776533  444444

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=99.20  E-value=3.3e-11  Score=114.11  Aligned_cols=97  Identities=19%  Similarity=0.228  Sum_probs=75.5

Q ss_pred             CCccEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CC
Q psy9056         218 TPVKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DP  296 (359)
Q Consensus       218 ~~~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~  296 (359)
                      ..+++|+|||+|.||.++|..|+++|++|++||+++++++...+           .             .+..+++. +.
T Consensus        29 ~~~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~l~~-----------~-------------g~~~~~~~~e~   84 (320)
T 4dll_A           29 PYARKITFLGTGSMGLPMARRLCEAGYALQVWNRTPARAASLAA-----------L-------------GATIHEQARAA   84 (320)
T ss_dssp             CCCSEEEEECCTTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHT-----------T-------------TCEEESSHHHH
T ss_pred             cCCCEEEEECccHHHHHHHHHHHhCCCeEEEEcCCHHHHHHHHH-----------C-------------CCEeeCCHHHH
Confidence            34579999999999999999999999999999999998665432           1             23445555 45


Q ss_pred             CCCccEEEEcccCCHHHHHHHHH--HHHHhCCCCcEEEEcCCCCc
Q psy9056         297 FKNADMVIEAVFEDINIKHQVIK--EIEAVVPPHCVVATNTSAIP  339 (359)
Q Consensus       297 l~~aD~Vi~avp~~~~~k~~v~~--~l~~~~~~~~ii~s~ts~~~  339 (359)
                      ++++|+||+|+|++..+ +.++.  .+.+.++++++|++.++..+
T Consensus        85 ~~~aDvVi~~vp~~~~~-~~v~~~~~~~~~l~~~~~vi~~st~~~  128 (320)
T 4dll_A           85 ARDADIVVSMLENGAVV-QDVLFAQGVAAAMKPGSLFLDMASITP  128 (320)
T ss_dssp             HTTCSEEEECCSSHHHH-HHHHTTTCHHHHCCTTCEEEECSCCCH
T ss_pred             HhcCCEEEEECCCHHHH-HHHHcchhHHhhCCCCCEEEecCCCCH
Confidence            78999999999976654 45554  67778889998887766544

>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*

Probab=99.19  E-value=2.3e-11  Score=119.24  Aligned_cols=117  Identities=19%  Similarity=0.303  Sum_probs=83.9

Q ss_pred             CCccEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHH----hHHHHHhhccCChHHHHhhhcccccccC
Q psy9056         218 TPVKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKT----GLDGAVKRKKMSALDRDRYLASLVGTLS  293 (359)
Q Consensus       218 ~~~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~----~l~~~~~~~~~~~~~~~~~~~~i~~~~~  293 (359)
                      ..++||+|||+|+||.++|..|++ |++|++||+++++++.+.+....    .++..+..+          ..++.+++|
T Consensus        34 ~~~mkIaVIGlG~mG~~lA~~La~-G~~V~~~D~~~~~v~~l~~g~~~i~e~~l~~ll~~~----------~~~l~~ttd  102 (432)
T 3pid_A           34 SEFMKITISGTGYVGLSNGVLIAQ-NHEVVALDIVQAKVDMLNQKISPIVDKEIQEYLAEK----------PLNFRATTD  102 (432)
T ss_dssp             -CCCEEEEECCSHHHHHHHHHHHT-TSEEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHHS----------CCCEEEESC
T ss_pred             cCCCEEEEECcCHHHHHHHHHHHc-CCeEEEEecCHHHhhHHhccCCccccccHHHHHhhc----------cCCeEEEcC
Confidence            456799999999999999999998 99999999999998876542110    111111110          136788888


Q ss_pred             c-CCCCCccEEEEcccCCH---------HHHHHHHHHHHHhCCCCcEEEEcCCCCcH---HHHHhhc
Q psy9056         294 Y-DPFKNADMVIEAVFEDI---------NIKHQVIKEIEAVVPPHCVVATNTSAIPI---TKIAAAS  347 (359)
Q Consensus       294 ~-~~l~~aD~Vi~avp~~~---------~~k~~v~~~l~~~~~~~~ii~s~ts~~~~---~~l~~~~  347 (359)
                      . +++++||+||+|+|++.         ...+.+.+.+.+ ++++++|+..| ++++   .++.+.+
T Consensus       103 ~~ea~~~aDvViiaVPt~~~~~~~~~Dl~~V~~v~~~i~~-l~~g~iVV~~S-Tv~pgtt~~l~~~l  167 (432)
T 3pid_A          103 KHDAYRNADYVIIATPTDYDPKTNYFNTSTVEAVIRDVTE-INPNAVMIIKS-TIPVGFTRDIKERL  167 (432)
T ss_dssp             HHHHHTTCSEEEECCCCEEETTTTEEECHHHHHHHHHHHH-HCTTSEEEECS-CCCTTHHHHHHHHH
T ss_pred             HHHHHhCCCEEEEeCCCccccccccccHHHHHHHHHHHHh-cCCCcEEEEeC-CCChHHHHHHHHHH
Confidence            7 67899999999999873         356778888888 88899887544 3443   3454444

>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6

Probab=99.18  E-value=4.6e-11  Score=111.96  Aligned_cols=99  Identities=19%  Similarity=0.283  Sum_probs=77.5

Q ss_pred             ccEEEEEC-CCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcCCCC
Q psy9056         220 VKTVAVLG-AGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPFK  298 (359)
Q Consensus       220 ~~kI~IIG-~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~  298 (359)
                      +++|+||| +|+||.++|..|.++|++|++||++++.                                    +..+.+.
T Consensus        21 ~~~I~iIGg~G~mG~~la~~l~~~G~~V~~~~~~~~~------------------------------------~~~~~~~   64 (298)
T 2pv7_A           21 IHKIVIVGGYGKLGGLFARYLRASGYPISILDREDWA------------------------------------VAESILA   64 (298)
T ss_dssp             CCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCGG------------------------------------GHHHHHT
T ss_pred             CCEEEEEcCCCHHHHHHHHHHHhCCCeEEEEECCccc------------------------------------CHHHHhc
Confidence            56899999 9999999999999999999999998751                                    0002367


Q ss_pred             CccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCc--HHHHHhhcCCCCcEEeecC
Q psy9056         299 NADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIP--ITKIAAASKRPDKVRNMGR  358 (359)
Q Consensus       299 ~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~--~~~l~~~~~~~~rvig~h~  358 (359)
                      ++|+||+|+|.+.  ...+++++.++++++++|++.++...  ++.+.+..  +.++++.|+
T Consensus        65 ~aDvVilavp~~~--~~~vl~~l~~~l~~~~iv~~~~svk~~~~~~~~~~~--~~~~v~~hP  122 (298)
T 2pv7_A           65 NADVVIVSVPINL--TLETIERLKPYLTENMLLADLTSVKREPLAKMLEVH--TGAVLGLHP  122 (298)
T ss_dssp             TCSEEEECSCGGG--HHHHHHHHGGGCCTTSEEEECCSCCHHHHHHHHHHC--SSEEEEEEE
T ss_pred             CCCEEEEeCCHHH--HHHHHHHHHhhcCCCcEEEECCCCCcHHHHHHHHhc--CCCEEeeCC
Confidence            8999999999877  77899999999999998876554322  34454443  368888886

>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}

Probab=99.18  E-value=3.3e-11  Score=112.81  Aligned_cols=101  Identities=21%  Similarity=0.194  Sum_probs=77.5

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CCCCC
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DPFKN  299 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~l~~  299 (359)
                      ++|+|||+|+||.++|..|+++|++|++||+++++++.+.+           .             .+..+++. +.++ 
T Consensus        16 ~~I~vIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~~~~-----------~-------------g~~~~~~~~~~~~-   70 (296)
T 3qha_A           16 LKLGYIGLGNMGAPMATRMTEWPGGVTVYDIRIEAMTPLAE-----------A-------------GATLADSVADVAA-   70 (296)
T ss_dssp             CCEEEECCSTTHHHHHHHHTTSTTCEEEECSSTTTSHHHHH-----------T-------------TCEECSSHHHHTT-
T ss_pred             CeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHH-----------C-------------CCEEcCCHHHHHh-
Confidence            58999999999999999999999999999999987665432           1             23455565 4466 


Q ss_pred             ccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCcHH--HHHhhc
Q psy9056         300 ADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPIT--KIAAAS  347 (359)
Q Consensus       300 aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~--~l~~~~  347 (359)
                      +|+||+|+|++.. .+.+++++.+.++++++|++.++..+..  .+.+.+
T Consensus        71 aDvvi~~vp~~~~-~~~v~~~l~~~l~~g~ivv~~st~~~~~~~~~~~~~  119 (296)
T 3qha_A           71 ADLIHITVLDDAQ-VREVVGELAGHAKPGTVIAIHSTISDTTAVELARDL  119 (296)
T ss_dssp             SSEEEECCSSHHH-HHHHHHHHHTTCCTTCEEEECSCCCHHHHHHHHHHH
T ss_pred             CCEEEEECCChHH-HHHHHHHHHHhcCCCCEEEEeCCCCHHHHHHHHHHH
Confidence            9999999997655 4566688999999999988776654432  344443

>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6

Probab=99.17  E-value=1e-10  Score=108.23  Aligned_cols=113  Identities=14%  Similarity=0.195  Sum_probs=81.3

Q ss_pred             ccEEEEECCCcchHHHHHHHHHCCC--eeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CC
Q psy9056         220 VKTVAVLGAGLMGAGIAHVTVDKGY--NTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DP  296 (359)
Q Consensus       220 ~~kI~IIG~G~mG~~iA~~l~~~G~--~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~  296 (359)
                      |++|+|||+|.||.+++..+.++|+  +|++||+++++++.+..           .|..           ...+++. +.
T Consensus         1 m~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~-----------~g~~-----------~~~~~~~~~~   58 (281)
T 2g5c_A            1 MQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVD-----------LGII-----------DEGTTSIAKV   58 (281)
T ss_dssp             CCEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHH-----------TTSC-----------SEEESCGGGG
T ss_pred             CcEEEEEecCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHH-----------CCCc-----------ccccCCHHHH
Confidence            5789999999999999999999999  99999999987665321           1110           0123444 55


Q ss_pred             CC-CccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCc--HHHHHhhcCCCCcEEeecC
Q psy9056         297 FK-NADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIP--ITKIAAASKRPDKVRNMGR  358 (359)
Q Consensus       297 l~-~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~--~~~l~~~~~~~~rvig~h~  358 (359)
                      +. ++|+||+|+|.+.  ...++.++.++++++++|++.++...  .+.+.+.++.  ++++.|+
T Consensus        59 ~~~~aDvVilavp~~~--~~~v~~~l~~~l~~~~iv~~~~~~~~~~~~~l~~~l~~--~~v~~~p  119 (281)
T 2g5c_A           59 EDFSPDFVMLSSPVRT--FREIAKKLSYILSEDATVTDQGSVKGKLVYDLENILGK--RFVGGHP  119 (281)
T ss_dssp             GGTCCSEEEECSCHHH--HHHHHHHHHHHSCTTCEEEECCSCCTHHHHHHHHHHGG--GEECEEE
T ss_pred             hcCCCCEEEEcCCHHH--HHHHHHHHHhhCCCCcEEEECCCCcHHHHHHHHHhccc--cceeecc
Confidence            77 9999999998765  55888889888999998876554332  2445554432  3666554

>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1

Probab=99.17  E-value=1.2e-10  Score=110.11  Aligned_cols=121  Identities=20%  Similarity=0.285  Sum_probs=85.7

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCC--eeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcCCCC
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGY--NTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPFK  298 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~--~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~  298 (359)
                      +||+|||+|.||.+++..++.+|+  +|++||+++++++.....+.+.+. ..     .       ..++.. +++++++
T Consensus         1 mkI~VIGaG~~G~~la~~l~~~g~~~~V~l~D~~~~~~~~~~~~l~~~~~-~~-----~-------~~~i~~-~d~~~~~   66 (319)
T 1a5z_A            1 MKIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTP-FT-----R-------RANIYA-GDYADLK   66 (319)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGG-GS-----C-------CCEEEE-CCGGGGT
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHHHHHhhhh-hc-----C-------CcEEEe-CCHHHhC
Confidence            489999999999999999999999  999999999887765444433221 00     0       012333 3567789


Q ss_pred             CccEEEEcccCC--------------HHHHHHHHHHHHHhCCCCcEEEEcCCCCcH-HHHH-hhcC-CCCcEEee
Q psy9056         299 NADMVIEAVFED--------------INIKHQVIKEIEAVVPPHCVVATNTSAIPI-TKIA-AASK-RPDKVRNM  356 (359)
Q Consensus       299 ~aD~Vi~avp~~--------------~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~-~~l~-~~~~-~~~rvig~  356 (359)
                      ++|+||++++..              ..+++++++.+.+++ ++++|+..|++..+ +.+. ...+ ++.|++|+
T Consensus        67 ~aDvViiav~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~-~~~~ii~~tNp~~~~~~~~~~~~~~~~~rviG~  140 (319)
T 1a5z_A           67 GSDVVIVAAGVPQKPGETRLQLLGRNARVMKEIARNVSKYA-PDSIVIVVTNPVDVLTYFFLKESGMDPRKVFGS  140 (319)
T ss_dssp             TCSEEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHC-TTCEEEECSSSHHHHHHHHHHHHTCCTTTEEEC
T ss_pred             CCCEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEEeCCcHHHHHHHHHHHhCCChhhEEee
Confidence            999999999863              246788999999996 56665555554443 3333 3333 57899986

>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans}

Probab=99.16  E-value=7.5e-11  Score=110.91  Aligned_cols=120  Identities=17%  Similarity=0.206  Sum_probs=83.0

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCC--eeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcCCCC
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGY--NTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPFK  298 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~--~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~  298 (359)
                      +||+|||+|.||.++|..++.+|+  +|++||+++++++.....+.+...       +.      ...+++. +++++++
T Consensus         1 mkI~VIGaG~vG~~la~~la~~g~~~eV~L~D~~~~~~~~~~~~l~~~~~-------~~------~~~~i~~-~~~~a~~   66 (304)
T 2v6b_A            1 MKVGVVGTGFVGSTAAFALVLRGSCSELVLVDRDEDRAQAEAEDIAHAAP-------VS------HGTRVWH-GGHSELA   66 (304)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHTTSCC-------TT------SCCEEEE-ECGGGGT
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHhhhhhhh-------hc------CCeEEEE-CCHHHhC
Confidence            489999999999999999999999  999999998876542222211100       00      0012332 5677899


Q ss_pred             CccEEEEcc--cC------------CHHHHHHHHHHHHHhCCCCcEEEEcCCCCc--HHHHHhhcCCCCcEEee
Q psy9056         299 NADMVIEAV--FE------------DINIKHQVIKEIEAVVPPHCVVATNTSAIP--ITKIAAASKRPDKVRNM  356 (359)
Q Consensus       299 ~aD~Vi~av--p~------------~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~--~~~l~~~~~~~~rvig~  356 (359)
                      +||+||+++  |.            +..+++++++++.+++ ++++|+..|++..  ...+.+.. +|+||+|+
T Consensus        67 ~aDvVIi~~~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~-p~~~vi~~tNP~~~~~~~~~~~~-~~~rviG~  138 (304)
T 2v6b_A           67 DAQVVILTAGANQKPGESRLDLLEKNADIFRELVPQITRAA-PDAVLLVTSNPVDLLTDLATQLA-PGQPVIGS  138 (304)
T ss_dssp             TCSEEEECC------------CHHHHHHHHHHHHHHHHHHC-SSSEEEECSSSHHHHHHHHHHHS-CSSCEEEC
T ss_pred             CCCEEEEcCCCCCCCCCcHHHHHHhHHHHHHHHHHHHHHhC-CCeEEEEecCchHHHHHHHHHhC-ChhcEEeC
Confidence            999999999  33            3457789999999996 6676554444433  34455555 78899986

>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}

Probab=99.16  E-value=1.5e-10  Score=102.81  Aligned_cols=94  Identities=17%  Similarity=0.173  Sum_probs=75.5

Q ss_pred             ccEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcCCCCC
Q psy9056         220 VKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPFKN  299 (359)
Q Consensus       220 ~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~  299 (359)
                      +++|+|||+|.||.++|..|+++|++|++||++++                                         .+++
T Consensus        19 ~~~I~iiG~G~mG~~la~~l~~~g~~V~~~~~~~~-----------------------------------------~~~~   57 (209)
T 2raf_A           19 GMEITIFGKGNMGQAIGHNFEIAGHEVTYYGSKDQ-----------------------------------------ATTL   57 (209)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTTCEEEEECTTCC-----------------------------------------CSSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHH-----------------------------------------Hhcc
Confidence            46899999999999999999999999999998854                                         3678


Q ss_pred             ccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCc---------------HHHHHhhcCCCCcEEe-ecC
Q psy9056         300 ADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIP---------------ITKIAAASKRPDKVRN-MGR  358 (359)
Q Consensus       300 aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~---------------~~~l~~~~~~~~rvig-~h~  358 (359)
                      +|+||+|+|  ....+.+++++.+.++ +++|++.+++++               .+.+++.++ ..+++. +|+
T Consensus        58 aD~vi~av~--~~~~~~v~~~l~~~~~-~~~vi~~~~g~~~~~~~~l~~~~~~~~~~~l~~~l~-~~~vv~~~~~  128 (209)
T 2raf_A           58 GEIVIMAVP--YPALAALAKQYATQLK-GKIVVDITNPLNFDTWDDLVVPADSSAAQELQQQLP-DSQVLKAFNT  128 (209)
T ss_dssp             CSEEEECSC--HHHHHHHHHHTHHHHT-TSEEEECCCCBCTTTSSSBSSCTTCCHHHHHHHHCT-TSEEEECSTT
T ss_pred             CCEEEEcCC--cHHHHHHHHHHHHhcC-CCEEEEECCCCCccccccccCCCCCcHHHHHHHHCC-CCcEEEeeec
Confidence            999999998  3346788888888877 899999888776               355666664 456666 443

>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A*

Probab=99.14  E-value=3.2e-10  Score=111.19  Aligned_cols=110  Identities=15%  Similarity=0.147  Sum_probs=78.1

Q ss_pred             CccEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHH----hHHHHHhhccCChHHHHhhhcccccccCc
Q psy9056         219 PVKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKT----GLDGAVKRKKMSALDRDRYLASLVGTLSY  294 (359)
Q Consensus       219 ~~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~----~l~~~~~~~~~~~~~~~~~~~~i~~~~~~  294 (359)
                      +-.|.+|||+|+||.++|..|+++||+|++||+++++++.+.+....    .++..+...        -...++.++++ 
T Consensus        10 ~~~~~~ViGlGyvGlp~A~~La~~G~~V~~~D~~~~kv~~L~~g~~pi~epgl~~ll~~~--------~~~g~l~~ttd-   80 (431)
T 3ojo_A           10 HGSKLTVVGLGYIGLPTSIMFAKHGVDVLGVDINQQTIDKLQNGQISIEEPGLQEVYEEV--------LSSGKLKVSTT-   80 (431)
T ss_dssp             --CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHH--------HHTTCEEEESS-
T ss_pred             cCCccEEEeeCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHhh--------cccCceEEeCc-
Confidence            34689999999999999999999999999999999998876542100    001000000        01245777776 


Q ss_pred             CCCCCccEEEEcccCCHH----------HHHHHHHHHHHhCCCCcEEEEcCCCCcH
Q psy9056         295 DPFKNADMVIEAVFEDIN----------IKHQVIKEIEAVVPPHCVVATNTSAIPI  340 (359)
Q Consensus       295 ~~l~~aD~Vi~avp~~~~----------~k~~v~~~l~~~~~~~~ii~s~ts~~~~  340 (359)
                        +++||+||+|||.+..          ......+.+.++++++++|+..| ++++
T Consensus        81 --~~~aDvvii~VpTp~~~~~~~~~Dl~~V~~~~~~i~~~l~~g~iVV~~S-TV~p  133 (431)
T 3ojo_A           81 --PEASDVFIIAVPTPNNDDQYRSCDISLVMRALDSILPFLKKGNTIIVES-TIAP  133 (431)
T ss_dssp             --CCCCSEEEECCCCCBCSSSSCBBCCHHHHHHHHHHGGGCCTTEEEEECS-CCCT
T ss_pred             --hhhCCEEEEEeCCCccccccCCccHHHHHHHHHHHHHhCCCCCEEEEec-CCCh
Confidence              4589999999998652          35667788999999999887554 4443

>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis}

Probab=99.14  E-value=1.2e-10  Score=110.22  Aligned_cols=128  Identities=21%  Similarity=0.244  Sum_probs=89.7

Q ss_pred             CCCccEEEEECCCcchHHHHHHHHHCCC-eeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcC
Q psy9056         217 QTPVKTVAVLGAGLMGAGIAHVTVDKGY-NTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYD  295 (359)
Q Consensus       217 ~~~~~kI~IIG~G~mG~~iA~~l~~~G~-~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~  295 (359)
                      .|+++||+|||+|.||.++|..++..|+ +|+++|+++++++.....+++.....   +         ...++..+++++
T Consensus         2 ~m~~~kI~iiGaG~vG~~~a~~l~~~~~~~v~l~Di~~~~~~g~a~dL~~~~~~~---~---------~~~~v~~t~d~~   69 (321)
T 3p7m_A            2 AMARKKITLVGAGNIGGTLAHLALIKQLGDVVLFDIAQGMPNGKALDLLQTCPIE---G---------VDFKVRGTNDYK   69 (321)
T ss_dssp             -CCCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTTHHHH---T---------CCCCEEEESCGG
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCChHHHHHHHHHHHhhhhhc---C---------CCcEEEEcCCHH
Confidence            3677899999999999999999999998 99999999988765444444321100   0         012345567788


Q ss_pred             CCCCccEEEEcccC--------------CHHHHHHHHHHHHHhCCCCcEEEEcCCC--CcHHHHHhhcCCC-CcEEeec
Q psy9056         296 PFKNADMVIEAVFE--------------DINIKHQVIKEIEAVVPPHCVVATNTSA--IPITKIAAASKRP-DKVRNMG  357 (359)
Q Consensus       296 ~l~~aD~Vi~avp~--------------~~~~k~~v~~~l~~~~~~~~ii~s~ts~--~~~~~l~~~~~~~-~rvig~h  357 (359)
                      ++++||+||++...              +..+.+++.+.+.+++ |+.+++..|+.  +.+..+....+.| .|++|+.
T Consensus        70 a~~~aDvVIi~ag~p~k~G~~R~dl~~~N~~i~~~i~~~i~~~~-p~a~vivvtNPvd~~t~~~~k~sg~p~~rviG~~  147 (321)
T 3p7m_A           70 DLENSDVVIVTAGVPRKPGMSRDDLLGINIKVMQTVGEGIKHNC-PNAFVICITNPLDIMVNMLQKFSGVPDNKIVGMA  147 (321)
T ss_dssp             GGTTCSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHC-TTCEEEECCSSHHHHHHHHHHHHCCCGGGEEEEC
T ss_pred             HHCCCCEEEEcCCcCCCCCCCHHHHHHHhHHHHHHHHHHHHHHC-CCcEEEEecCchHHHHHHHHHhcCCCHHHEEeec
Confidence            99999999998632              3456778888899998 56665544443  3334455555544 8999964

>2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum}

Probab=99.13  E-value=3.1e-11  Score=110.55  Aligned_cols=99  Identities=19%  Similarity=0.247  Sum_probs=79.5

Q ss_pred             CccEEEEECCCcchHHHHHHHHHCC----CeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc
Q psy9056         219 PVKTVAVLGAGLMGAGIAHVTVDKG----YNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY  294 (359)
Q Consensus       219 ~~~kI~IIG~G~mG~~iA~~l~~~G----~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~  294 (359)
                      .+++|+|||+|.||.+++..|.++|    ++|++||+++++                 .             .+...++.
T Consensus         3 ~~m~i~iiG~G~mG~~~a~~l~~~g~~~~~~v~~~~~~~~~-----------------~-------------g~~~~~~~   52 (262)
T 2rcy_A            3 ENIKLGFMGLGQMGSALAHGIANANIIKKENLFYYGPSKKN-----------------T-------------TLNYMSSN   52 (262)
T ss_dssp             SSSCEEEECCSHHHHHHHHHHHHHTSSCGGGEEEECSSCCS-----------------S-------------SSEECSCH
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCCCCCCeEEEEeCCccc-----------------C-------------ceEEeCCH
Confidence            3468999999999999999999999    799999999764                 0             12233344


Q ss_pred             -CCCCCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCcHHHHHhhcCCC
Q psy9056         295 -DPFKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPITKIAAASKRP  350 (359)
Q Consensus       295 -~~l~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~  350 (359)
                       +.++++|+||+|+|.+.  .+++++++.+++ ++++|++.+++++.+.+.+.++..
T Consensus        53 ~~~~~~~D~vi~~v~~~~--~~~v~~~l~~~l-~~~~vv~~~~gi~~~~l~~~~~~~  106 (262)
T 2rcy_A           53 EELARHCDIIVCAVKPDI--AGSVLNNIKPYL-SSKLLISICGGLNIGKLEEMVGSE  106 (262)
T ss_dssp             HHHHHHCSEEEECSCTTT--HHHHHHHSGGGC-TTCEEEECCSSCCHHHHHHHHCTT
T ss_pred             HHHHhcCCEEEEEeCHHH--HHHHHHHHHHhc-CCCEEEEECCCCCHHHHHHHhCCC
Confidence             45678999999999765  678889998888 677888999999998888877643

>2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A

Probab=99.13  E-value=6.7e-11  Score=108.22  Aligned_cols=108  Identities=16%  Similarity=0.182  Sum_probs=80.4

Q ss_pred             ccEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CCCC
Q psy9056         220 VKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DPFK  298 (359)
Q Consensus       220 ~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~l~  298 (359)
                      +++|+|||+|.||..++..+.+.|++|.+||+++++++...+..                       .+...++. +.++
T Consensus         3 ~m~i~iiG~G~mG~~~a~~l~~~g~~v~~~~~~~~~~~~~~~~~-----------------------g~~~~~~~~~~~~   59 (259)
T 2ahr_A            3 AMKIGIIGVGKMASAIIKGLKQTPHELIISGSSLERSKEIAEQL-----------------------ALPYAMSHQDLID   59 (259)
T ss_dssp             CCEEEEECCSHHHHHHHHHHTTSSCEEEEECSSHHHHHHHHHHH-----------------------TCCBCSSHHHHHH
T ss_pred             ccEEEEECCCHHHHHHHHHHHhCCCeEEEECCCHHHHHHHHHHc-----------------------CCEeeCCHHHHHh
Confidence            45899999999999999999999999999999998876543211                       12233444 4467


Q ss_pred             CccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCcHHHHHhhcCCCCcEEee
Q psy9056         299 NADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPITKIAAASKRPDKVRNM  356 (359)
Q Consensus       299 ~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~rvig~  356 (359)
                      ++|+||+|+|.+.  ...++.++    .++++|++.+++++++.+.+.++...+++..
T Consensus        60 ~~D~Vi~~v~~~~--~~~v~~~l----~~~~~vv~~~~~~~~~~l~~~~~~~~~~v~~  111 (259)
T 2ahr_A           60 QVDLVILGIKPQL--FETVLKPL----HFKQPIISMAAGISLQRLATFVGQDLPLLRI  111 (259)
T ss_dssp             TCSEEEECSCGGG--HHHHHTTS----CCCSCEEECCTTCCHHHHHHHHCTTSCEEEE
T ss_pred             cCCEEEEEeCcHh--HHHHHHHh----ccCCEEEEeCCCCCHHHHHHhcCCCCCEEEE
Confidence            8999999999443  44555543    4778888998899998888877654455543

>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1

Probab=99.13  E-value=1.9e-10  Score=108.92  Aligned_cols=124  Identities=16%  Similarity=0.159  Sum_probs=91.7

Q ss_pred             CccEEEEECCCcchHHHHHHHHHCCC--eeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcCC
Q psy9056         219 PVKTVAVLGAGLMGAGIAHVTVDKGY--NTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDP  296 (359)
Q Consensus       219 ~~~kI~IIG~G~mG~~iA~~l~~~G~--~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  296 (359)
                      +.+||+|||+|.||.++|..++.+|+  +|+++|+++++++.....+++....             ....++..++|+++
T Consensus        20 ~~~kV~ViGaG~vG~~~a~~la~~g~~~ev~L~Di~~~~~~g~a~DL~~~~~~-------------~~~~~i~~t~d~~~   86 (330)
T 3ldh_A           20 SYNKITVVGCDAVGMADAISVLMKDLADEVALVDVMEDKLKGEMMDLEHGSLF-------------LHTAKIVSGKDYSV   86 (330)
T ss_dssp             CCCEEEEESTTHHHHHHHHHHHHHCCCSEEEEECSCHHHHHHHHHHHHHHGGG-------------SCCSEEEEESSSCS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhhhhc-------------ccCCeEEEcCCHHH
Confidence            56899999999999999999999998  9999999999877665555543210             01135667788988


Q ss_pred             CCCccEEEEcc--------------cCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCc--HHHHHhhcCC-CCcEEee
Q psy9056         297 FKNADMVIEAV--------------FEDINIKHQVIKEIEAVVPPHCVVATNTSAIP--ITKIAAASKR-PDKVRNM  356 (359)
Q Consensus       297 l~~aD~Vi~av--------------p~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~--~~~l~~~~~~-~~rvig~  356 (359)
                      +++||+||++.              ..+..+++++.+++.+++ |+.+++..|+...  ...+.+..+. +.|++|+
T Consensus        87 ~~daDiVIitaG~p~kpG~tR~dll~~N~~I~k~i~~~I~k~~-P~a~ilvvtNPvdi~t~~~~k~sg~p~~rViG~  162 (330)
T 3ldh_A           87 SAGSKLVVITAGARQQEGESRLNLVQRNVNIFKFIIPNIVKHS-PDCLKELHPELGTDKNKQDWKLSGLPMHRIIGS  162 (330)
T ss_dssp             CSSCSEEEECCSCCCCSSCCTTGGGHHHHHHHHHHHHHHHHHC-TTCEEEECSSSHHHHHHHHHHHHCCCGGGEECC
T ss_pred             hCCCCEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHhhC-CCceEEeCCCccHHHHHHHHHHhCCCHHHeecc
Confidence            99999999874              345678889999999995 5676655555433  3344444454 5788886

>1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A*

Probab=99.12  E-value=2.1e-11  Score=117.31  Aligned_cols=111  Identities=14%  Similarity=0.118  Sum_probs=80.2

Q ss_pred             CCccEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CC
Q psy9056         218 TPVKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DP  296 (359)
Q Consensus       218 ~~~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~  296 (359)
                      |.|+||+|||+|+||.++|..|+++|++|++||+++++++.+.+...+.  .+.. +.       ....++..+++. +.
T Consensus        13 m~M~kI~iIG~G~mG~~la~~L~~~G~~V~~~~r~~~~~~~l~~~~~~~--~~~~-~~-------~~~~~~~~~~~~~~~   82 (366)
T 1evy_A           13 LYLNKAVVFGSGAFGTALAMVLSKKCREVCVWHMNEEEVRLVNEKRENV--LFLK-GV-------QLASNITFTSDVEKA   82 (366)
T ss_dssp             CCEEEEEEECCSHHHHHHHHHHTTTEEEEEEECSCHHHHHHHHHHTBCT--TTST-TC-------BCCTTEEEESCHHHH
T ss_pred             hccCeEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCccc--cccc-cc-------ccccceeeeCCHHHH
Confidence            4455999999999999999999999999999999998877654321000  0000 00       011234555565 45


Q ss_pred             CCCccEEEEcccCCHHHHHHHHHH----HHHhCCC-CcEEEEcCCCCcH
Q psy9056         297 FKNADMVIEAVFEDINIKHQVIKE----IEAVVPP-HCVVATNTSAIPI  340 (359)
Q Consensus       297 l~~aD~Vi~avp~~~~~k~~v~~~----l~~~~~~-~~ii~s~ts~~~~  340 (359)
                      ++++|+||+|+|.  ...++++.+    +.+++++ +++|++.++++.+
T Consensus        83 ~~~aDvVilav~~--~~~~~v~~~~~~gl~~~l~~~~~ivv~~~~gi~~  129 (366)
T 1evy_A           83 YNGAEIILFVIPT--QFLRGFFEKSGGNLIAYAKEKQVPVLVCTKGIER  129 (366)
T ss_dssp             HTTCSSEEECCCH--HHHHHHHHHHCHHHHHHHHHHTCCEEECCCSCCT
T ss_pred             HcCCCEEEECCCh--HHHHHHHHHhHHHHHHhcCccCCEEEEECCcCCC
Confidence            7899999999985  447788888    8888888 8888888877765

>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A*

Probab=99.12  E-value=1.8e-10  Score=109.07  Aligned_cols=127  Identities=21%  Similarity=0.241  Sum_probs=89.4

Q ss_pred             CCccEEEEECCCcchHHHHHHHHHCCC-eeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcCC
Q psy9056         218 TPVKTVAVLGAGLMGAGIAHVTVDKGY-NTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDP  296 (359)
Q Consensus       218 ~~~~kI~IIG~G~mG~~iA~~l~~~G~-~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  296 (359)
                      |+++||+|||+|.||.++|..++..|+ +|++||+++++++.....+++.... .  +         ...++..++++++
T Consensus         5 m~~~kI~viGaG~vG~~~a~~l~~~~~~~v~L~Di~~~~~~g~~~dl~~~~~~-~--~---------~~~~v~~t~d~~a   72 (324)
T 3gvi_A            5 MARNKIALIGSGMIGGTLAHLAGLKELGDVVLFDIAEGTPQGKGLDIAESSPV-D--G---------FDAKFTGANDYAA   72 (324)
T ss_dssp             -CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHHHHHH-H--T---------CCCCEEEESSGGG
T ss_pred             CcCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCchhHHHHHHHHhchhhh-c--C---------CCCEEEEeCCHHH
Confidence            667899999999999999999999999 9999999998876544334332110 0  0         0124556678889


Q ss_pred             CCCccEEEEcccC--------------CHHHHHHHHHHHHHhCCCCcEEEEcCCCC--cHHHHHhhcCC-CCcEEeec
Q psy9056         297 FKNADMVIEAVFE--------------DINIKHQVIKEIEAVVPPHCVVATNTSAI--PITKIAAASKR-PDKVRNMG  357 (359)
Q Consensus       297 l~~aD~Vi~avp~--------------~~~~k~~v~~~l~~~~~~~~ii~s~ts~~--~~~~l~~~~~~-~~rvig~h  357 (359)
                      +++||+||+++..              +..+.+++.+.+.+++ ++.+++..|+..  .+..+....+. +.|++|+.
T Consensus        73 ~~~aDiVIiaag~p~k~G~~R~dl~~~N~~i~~~i~~~i~~~~-p~a~iivvtNPvd~~t~~~~k~sg~p~~rviG~~  149 (324)
T 3gvi_A           73 IEGADVVIVTAGVPRKPGMSRDDLLGINLKVMEQVGAGIKKYA-PEAFVICITNPLDAMVWALQKFSGLPAHKVVGMA  149 (324)
T ss_dssp             GTTCSEEEECCSCCCC-----CHHHHHHHHHHHHHHHHHHHHC-TTCEEEECCSSHHHHHHHHHHHHCCCGGGEEECC
T ss_pred             HCCCCEEEEccCcCCCCCCCHHHHHHhhHHHHHHHHHHHHHHC-CCeEEEecCCCcHHHHHHHHHhcCCCHHHEEeec
Confidence            9999999998732              3456677888899997 567665555543  33444455554 47899874

>3dfu_A Uncharacterized protein from 6-phosphogluconate dehydrogenase-like family; putative rossmann-like dehydrogenase, structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}

Probab=99.12  E-value=8.3e-11  Score=105.89  Aligned_cols=92  Identities=10%  Similarity=0.052  Sum_probs=75.6

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcCCCCCc
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPFKNA  300 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~a  300 (359)
                      +||+|||+|+||+++|..|.++|++|++||+.                                          +.+.++
T Consensus         7 mkI~IIG~G~~G~sLA~~L~~~G~~V~~~~~~------------------------------------------~~~~~a   44 (232)
T 3dfu_A            7 LRVGIFDDGSSTVNMAEKLDSVGHYVTVLHAP------------------------------------------EDIRDF   44 (232)
T ss_dssp             CEEEEECCSCCCSCHHHHHHHTTCEEEECSSG------------------------------------------GGGGGC
T ss_pred             cEEEEEeeCHHHHHHHHHHHHCCCEEEEecCH------------------------------------------HHhccC
Confidence            58999999999999999999999999999972                                          114667


Q ss_pred             cEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCcHHHHHhhcCCCCcEEeecC
Q psy9056         301 DMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPITKIAAASKRPDKVRNMGR  358 (359)
Q Consensus       301 D~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~rvig~h~  358 (359)
                      |  |+|+|.+.  ...+++++.++++++++|++++.+.+.+.+........+++++|+
T Consensus        45 D--ilavP~~a--i~~vl~~l~~~l~~g~ivvd~sgs~~~~vl~~~~~~g~~fvg~HP   98 (232)
T 3dfu_A           45 E--LVVIDAHG--VEGYVEKLSAFARRGQMFLHTSLTHGITVMDPLETSGGIVMSAHP   98 (232)
T ss_dssp             S--EEEECSSC--HHHHHHHHHTTCCTTCEEEECCSSCCGGGGHHHHHTTCEEEEEEE
T ss_pred             C--EEEEcHHH--HHHHHHHHHHhcCCCCEEEEECCcCHHHHHHHHHhCCCcEEEeee
Confidence            8  99999885  678889999999999999887666665555544445678999996

>1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A*

Probab=99.12  E-value=4.9e-11  Score=114.04  Aligned_cols=110  Identities=13%  Similarity=0.111  Sum_probs=80.1

Q ss_pred             CCccEEEEECCCcchHHHHHHHHHCC-------CeeEEecCCHH-----HHHHHHHHHHHhHHHHHhhccCChHHHHhhh
Q psy9056         218 TPVKTVAVLGAGLMGAGIAHVTVDKG-------YNTIVKDSFEK-----GLARGLGQIKTGLDGAVKRKKMSALDRDRYL  285 (359)
Q Consensus       218 ~~~~kI~IIG~G~mG~~iA~~l~~~G-------~~V~l~d~~~~-----~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  285 (359)
                      |.++||+|||+|+||+++|..|+++|       ++|++||++++     ..+........ . .+. .+.       ...
T Consensus         6 m~~mkI~iIG~G~mG~~~a~~l~~~g~~~~~~~~~V~~~~r~~~~~~~~~~~~l~~~~~~-~-~~~-~~~-------~~~   75 (354)
T 1x0v_A            6 MASKKVCIVGSGNWGSAIAKIVGGNAAQLAQFDPRVTMWVFEEDIGGKKLTEIINTQHEN-V-KYL-PGH-------KLP   75 (354)
T ss_dssp             -CCEEEEEECCSHHHHHHHHHHHHHHHHCTTEEEEEEEECCCCBSSSSBHHHHHHHHSCC-T-TTS-TTC-------CCC
T ss_pred             cCCCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEcChhhhhhHHHHHHHhcCcc-c-ccC-Ccc-------cCc
Confidence            55579999999999999999999999       99999999987     65543321000 0 000 000       011


Q ss_pred             cccccccCc-CCCCCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCc
Q psy9056         286 ASLVGTLSY-DPFKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIP  339 (359)
Q Consensus       286 ~~i~~~~~~-~~l~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~  339 (359)
                      .++.++++. +.++++|+||+|+|.+.  .+.+++++.++++++++|++.++++.
T Consensus        76 ~~~~~~~~~~~~~~~aD~Vilav~~~~--~~~v~~~i~~~l~~~~ivv~~~~Gi~  128 (354)
T 1x0v_A           76 PNVVAVPDVVQAAEDADILIFVVPHQF--IGKICDQLKGHLKANATGISLIKGVD  128 (354)
T ss_dssp             TTEEEESSHHHHHTTCSEEEECCCGGG--HHHHHHHHTTCSCTTCEEEECCCCBC
T ss_pred             cCeEEEcCHHHHHcCCCEEEEeCCHHH--HHHHHHHHHhhCCCCCEEEEECCccC
Confidence            235555666 45789999999999754  77899999999999999999998875

>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}

Probab=99.11  E-value=2.3e-10  Score=108.20  Aligned_cols=100  Identities=18%  Similarity=0.086  Sum_probs=71.5

Q ss_pred             ccEEEEECCCcchHHHHHHHHHCC-CeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CCC
Q psy9056         220 VKTVAVLGAGLMGAGIAHVTVDKG-YNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DPF  297 (359)
Q Consensus       220 ~~kI~IIG~G~mG~~iA~~l~~~G-~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~l  297 (359)
                      +++|+|||+|+||.++|..|+++| ++|++||++++..+......+    ...+.             .+ .+++. +.+
T Consensus        24 ~m~IgvIG~G~mG~~lA~~L~~~G~~~V~~~dr~~~~~~~~~~~~~----~~~~~-------------g~-~~~s~~e~~   85 (317)
T 4ezb_A           24 MTTIAFIGFGEAAQSIAGGLGGRNAARLAAYDLRFNDPAASGALRA----RAAEL-------------GV-EPLDDVAGI   85 (317)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCSEEEEECGGGGCTTTHHHHHH----HHHHT-------------TC-EEESSGGGG
T ss_pred             CCeEEEECccHHHHHHHHHHHHcCCCeEEEEeCCCccccchHHHHH----HHHHC-------------CC-CCCCHHHHH
Confidence            468999999999999999999999 999999999832111111111    11111             12 22144 668


Q ss_pred             CCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCc
Q psy9056         298 KNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIP  339 (359)
Q Consensus       298 ~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~  339 (359)
                      ++||+||+|+|.+...  ..++++.+.++++++|++.++..+
T Consensus        86 ~~aDvVi~avp~~~~~--~~~~~i~~~l~~~~ivv~~st~~p  125 (317)
T 4ezb_A           86 ACADVVLSLVVGAATK--AVAASAAPHLSDEAVFIDLNSVGP  125 (317)
T ss_dssp             GGCSEEEECCCGGGHH--HHHHHHGGGCCTTCEEEECCSCCH
T ss_pred             hcCCEEEEecCCHHHH--HHHHHHHhhcCCCCEEEECCCCCH
Confidence            8999999999988754  456889999999999887765443

>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis}

Probab=99.11  E-value=2.7e-10  Score=107.46  Aligned_cols=125  Identities=18%  Similarity=0.265  Sum_probs=85.6

Q ss_pred             CccEEEEECCCcchHHHHHHHHHCCC-eeEEecCC--HHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcC
Q psy9056         219 PVKTVAVLGAGLMGAGIAHVTVDKGY-NTIVKDSF--EKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYD  295 (359)
Q Consensus       219 ~~~kI~IIG~G~mG~~iA~~l~~~G~-~V~l~d~~--~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~  295 (359)
                      ..+||+|||+|.||.++|..++.+|+ +|+++|++  +++++.....+.+..+ .           .....++..+++++
T Consensus         7 ~~~kv~ViGaG~vG~~ia~~l~~~g~~~v~l~D~~~~~~~~~g~a~dl~~~~~-~-----------~~~~~~i~~t~d~~   74 (315)
T 3tl2_A            7 KRKKVSVIGAGFTGATTAFLLAQKELADVVLVDIPQLENPTKGKALDMLEASP-V-----------QGFDANIIGTSDYA   74 (315)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCGGGHHHHHHHHHHHHHHHH-H-----------HTCCCCEEEESCGG
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeccchHHHHHHhhhhHHHhhh-h-----------ccCCCEEEEcCCHH
Confidence            34799999999999999999999999 99999999  5554433333332110 0           01123566677889


Q ss_pred             CCCCccEEEEcccC--------------CHHHHHHHHHHHHHhCCCCcEEEEcCCCCc--HHHHHhhcCC-CCcEEee
Q psy9056         296 PFKNADMVIEAVFE--------------DINIKHQVIKEIEAVVPPHCVVATNTSAIP--ITKIAAASKR-PDKVRNM  356 (359)
Q Consensus       296 ~l~~aD~Vi~avp~--------------~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~--~~~l~~~~~~-~~rvig~  356 (359)
                      ++++||+||+++..              +..+.+++.+.+.+++ |+.+++..|+...  ...+.+..+. +.|++|+
T Consensus        75 a~~~aDvVIiaag~p~kpg~~R~dl~~~N~~i~~~i~~~i~~~~-p~a~vlvvsNPvd~~t~~~~k~sg~p~~rviG~  151 (315)
T 3tl2_A           75 DTADSDVVVITAGIARKPGMSRDDLVATNSKIMKSITRDIAKHS-PNAIIVVLTNPVDAMTYSVFKEAGFPKERVIGQ  151 (315)
T ss_dssp             GGTTCSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHC-TTCEEEECCSSHHHHHHHHHHHHCCCGGGEEEC
T ss_pred             HhCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEECCChHHHHHHHHHHhcCCChHHEEee
Confidence            99999999999722              3446778888899987 5666655555433  3334444443 4789886

>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1

Probab=99.11  E-value=3.3e-10  Score=106.63  Aligned_cols=122  Identities=16%  Similarity=0.207  Sum_probs=85.1

Q ss_pred             ccEEEEECCCcchHHHHHHHHHCC--CeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhccccc-ccCcCC
Q psy9056         220 VKTVAVLGAGLMGAGIAHVTVDKG--YNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVG-TLSYDP  296 (359)
Q Consensus       220 ~~kI~IIG~G~mG~~iA~~l~~~G--~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~  296 (359)
                      |+||+|||+|.||.++|..|+++|  ++|++||+++++++.....+.+... .  .+           ..+.. ++++++
T Consensus         1 m~kI~VIGaG~~G~~la~~L~~~g~~~~V~l~d~~~~~~~~~~~~l~~~~~-~--~~-----------~~~~~~~~d~~~   66 (309)
T 1hyh_A            1 ARKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMA-N--LE-----------AHGNIVINDWAA   66 (309)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGG-G--SS-----------SCCEEEESCGGG
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHHHHhhhh-h--cC-----------CCeEEEeCCHHH
Confidence            469999999999999999999999  7999999999887765443332111 0  00           11222 456677


Q ss_pred             CCCccEEEEcccCCH------------------HHHHHHHHHHHHhCCCCcEEEEcCCCCcH-HHHHhhc-C-CCCcEEe
Q psy9056         297 FKNADMVIEAVFEDI------------------NIKHQVIKEIEAVVPPHCVVATNTSAIPI-TKIAAAS-K-RPDKVRN  355 (359)
Q Consensus       297 l~~aD~Vi~avp~~~------------------~~k~~v~~~l~~~~~~~~ii~s~ts~~~~-~~l~~~~-~-~~~rvig  355 (359)
                      ++++|+||++++...                  .+++++++.+.++++ +++|+..+++..+ +.+.... . ++.|++|
T Consensus        67 ~~~aDvViiav~~~~~~~~~~g~~r~~l~~~n~~i~~~i~~~i~~~~~-~~~ii~~tNp~~~~~~~~~~~~~~~~~rvig  145 (309)
T 1hyh_A           67 LADADVVISTLGNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESGF-HGVLVVISNPVDVITALFQHVTGFPAHKVIG  145 (309)
T ss_dssp             GTTCSEEEECCSCGGGTC-------CTTHHHHHHHHHHHHHHHHHTTC-CSEEEECSSSHHHHHHHHHHHHCCCGGGEEE
T ss_pred             hCCCCEEEEecCCcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC-CcEEEEEcCcHHHHHHHHHHhcCCCHHHEee
Confidence            899999999998644                  346788889998874 6666556665544 2333332 2 4678988


Q ss_pred             e
Q psy9056         356 M  356 (359)
Q Consensus       356 ~  356 (359)
                      +
T Consensus       146 ~  146 (309)
T 1hyh_A          146 T  146 (309)
T ss_dssp             C
T ss_pred             c
Confidence            7

>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}

Probab=99.11  E-value=1.2e-10  Score=105.88  Aligned_cols=106  Identities=16%  Similarity=0.137  Sum_probs=69.0

Q ss_pred             CCccEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHH-HHH-HHHHHHHh-HHHHHhhccCChHHHHhhhcccccccCc
Q psy9056         218 TPVKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKG-LAR-GLGQIKTG-LDGAVKRKKMSALDRDRYLASLVGTLSY  294 (359)
Q Consensus       218 ~~~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~-l~~-~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~i~~~~~~  294 (359)
                      ...++|+|||+|.||.++|..|+++|++|++||+++++ +.. .....++. +....+.           .......+..
T Consensus        17 ~~~~kIgiIG~G~mG~alA~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~   85 (245)
T 3dtt_A           17 FQGMKIAVLGTGTVGRTMAGALADLGHEVTIGTRDPKATLARAEPDAMGAPPFSQWLPE-----------HPHVHLAAFA   85 (245)
T ss_dssp             --CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHTCC-------CCHHHHGGG-----------STTCEEEEHH
T ss_pred             cCCCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCChhhhhhhhhhhhhcchhhhHHHhh-----------cCceeccCHH
Confidence            45589999999999999999999999999999999986 111 10000000 0111110           0112222223


Q ss_pred             CCCCCccEEEEcccCCHHHHHHHHHHH-HHhCCCCcEEEEcCCC
Q psy9056         295 DPFKNADMVIEAVFEDINIKHQVIKEI-EAVVPPHCVVATNTSA  337 (359)
Q Consensus       295 ~~l~~aD~Vi~avp~~~~~k~~v~~~l-~~~~~~~~ii~s~ts~  337 (359)
                      +.+++||+||+|+|.+..  .+++.++ .+.+ ++++|++.+++
T Consensus        86 e~~~~aDvVilavp~~~~--~~~~~~i~~~~l-~g~ivi~~s~~  126 (245)
T 3dtt_A           86 DVAAGAELVVNATEGASS--IAALTAAGAENL-AGKILVDIANP  126 (245)
T ss_dssp             HHHHHCSEEEECSCGGGH--HHHHHHHCHHHH-TTSEEEECCCC
T ss_pred             HHHhcCCEEEEccCcHHH--HHHHHHhhhhhc-CCCEEEECCCC
Confidence            567899999999998763  3667777 6666 78888888854

>2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A*

Probab=99.10  E-value=1.6e-10  Score=115.27  Aligned_cols=109  Identities=10%  Similarity=0.143  Sum_probs=81.5

Q ss_pred             CCccEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CC
Q psy9056         218 TPVKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DP  296 (359)
Q Consensus       218 ~~~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~  296 (359)
                      |.-++|+|||+|.||.++|..|+++|++|++||+++++++...+...         +           .++..+++. +.
T Consensus        13 ~~~~~IgvIGlG~MG~~lA~~La~~G~~V~v~~r~~~~~~~l~~~~~---------~-----------~gi~~~~s~~e~   72 (480)
T 2zyd_A           13 MSKQQIGVVGMAVMGRNLALNIESRGYTVSIFNRSREKTEEVIAENP---------G-----------KKLVPYYTVKEF   72 (480)
T ss_dssp             --CBSEEEECCSHHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHST---------T-----------SCEEECSSHHHH
T ss_pred             cCCCeEEEEccHHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHhhCC---------C-----------CCeEEeCCHHHH
Confidence            55578999999999999999999999999999999998776543110         0           124445555 33


Q ss_pred             CCC---ccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCcH--HHHHhhc
Q psy9056         297 FKN---ADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPI--TKIAAAS  347 (359)
Q Consensus       297 l~~---aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~--~~l~~~~  347 (359)
                      +++   +|+||+|+|.... .+.+++++.++++++++|++.+++.+.  ..+.+.+
T Consensus        73 v~~l~~aDvVil~Vp~~~~-v~~vl~~l~~~l~~g~iIId~s~g~~~~t~~l~~~l  127 (480)
T 2zyd_A           73 VESLETPRRILLMVKAGAG-TDAAIDSLKPYLDKGDIIIDGGNTFFQDTIRRNREL  127 (480)
T ss_dssp             HHTBCSSCEEEECSCSSSH-HHHHHHHHGGGCCTTCEEEECSCCCHHHHHHHHHHH
T ss_pred             HhCCCCCCEEEEECCCHHH-HHHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHH
Confidence            444   9999999998543 567888999999999999998888754  3454444

>1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum}

Probab=99.09  E-value=5.2e-11  Score=115.07  Aligned_cols=109  Identities=15%  Similarity=0.087  Sum_probs=79.7

Q ss_pred             ccEEEEECCCcchHHHHHHHHHCC-------CeeEEecCCHH-----HHHHHHHHHHHhHHHHHhhccCChHHHHhhhcc
Q psy9056         220 VKTVAVLGAGLMGAGIAHVTVDKG-------YNTIVKDSFEK-----GLARGLGQIKTGLDGAVKRKKMSALDRDRYLAS  287 (359)
Q Consensus       220 ~~kI~IIG~G~mG~~iA~~l~~~G-------~~V~l~d~~~~-----~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  287 (359)
                      |+||+|||+|+||+++|..|+++|       ++|++||++++     +++...+...        .....++  .....+
T Consensus        21 ~~kI~iIGaG~mG~alA~~L~~~G~~~~~~~~~V~~~~r~~~~~~~~~~~~l~~~~~--------~~~~~~~--~~~~~~   90 (375)
T 1yj8_A           21 PLKISILGSGNWASAISKVVGTNAKNNYLFENEVRMWIRDEFVNGERMVDIINNKHE--------NTKYLKG--VPLPHN   90 (375)
T ss_dssp             CBCEEEECCSHHHHHHHHHHHHHHHHCTTBCSCEEEECCSCC---CCHHHHHHHHCB--------CTTTSTT--CBCCTT
T ss_pred             CCEEEEECcCHHHHHHHHHHHHcCCccCCCCCeEEEEECChhhhhHHHHHHHHhcCc--------ccccCCc--ccCcCC
Confidence            468999999999999999999999       99999999987     5554322100        0000000  001124


Q ss_pred             cccccCc-CCCCCccEEEEcccCCHHHHHHHHHHHHH----hCCCCcEEEEcCCCCcH
Q psy9056         288 LVGTLSY-DPFKNADMVIEAVFEDINIKHQVIKEIEA----VVPPHCVVATNTSAIPI  340 (359)
Q Consensus       288 i~~~~~~-~~l~~aD~Vi~avp~~~~~k~~v~~~l~~----~~~~~~ii~s~ts~~~~  340 (359)
                      +.++++. +.++++|+||+|+|.  ..++++++++.+    +++++++|++.++|+.+
T Consensus        91 i~~~~~~~ea~~~aDvVilav~~--~~~~~vl~~i~~~~~~~l~~~~ivvs~~~Gi~~  146 (375)
T 1yj8_A           91 IVAHSDLASVINDADLLIFIVPC--QYLESVLASIKESESIKIASHAKAISLTKGFIV  146 (375)
T ss_dssp             EEEESSTHHHHTTCSEEEECCCH--HHHHHHHHHHTC---CCCCTTCEEEECCCSCEE
T ss_pred             eEEECCHHHHHcCCCEEEEcCCH--HHHHHHHHHHhhhhhccCCCCCEEEEeCCcccc
Confidence            5566666 457899999999986  458899999988    88899999999988665

>2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A*

Probab=99.09  E-value=2.5e-10  Score=113.74  Aligned_cols=110  Identities=13%  Similarity=0.125  Sum_probs=82.5

Q ss_pred             CCccEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CC
Q psy9056         218 TPVKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DP  296 (359)
Q Consensus       218 ~~~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~  296 (359)
                      |..++|+|||+|.||..+|..++++|++|.+||+++++++...+...         +           .++..+++. +.
T Consensus         3 m~~~~IgvIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~---------~-----------~gi~~~~s~~e~   62 (474)
T 2iz1_A            3 MAQANFGVVGMAVMGKNLALNVESRGYTVAIYNRTTSKTEEVFKEHQ---------D-----------KNLVFTKTLEEF   62 (474)
T ss_dssp             CTTBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTT---------T-----------SCEEECSSHHHH
T ss_pred             CCCCcEEEEeeHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHHHhCc---------C-----------CCeEEeCCHHHH
Confidence            44468999999999999999999999999999999998776543110         0           123444454 33


Q ss_pred             CC---CccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCcH--HHHHhhcC
Q psy9056         297 FK---NADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPI--TKIAAASK  348 (359)
Q Consensus       297 l~---~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~--~~l~~~~~  348 (359)
                      ++   .+|+||+|+|.... .+.+++++.+.++++++|++.+++.+.  ..+.+.+.
T Consensus        63 v~~l~~aDvVilavp~~~~-v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~l~~~l~  118 (474)
T 2iz1_A           63 VGSLEKPRRIMLMVQAGAA-TDATIKSLLPLLDIGDILIDGGNTHFPDTMRRNAELA  118 (474)
T ss_dssp             HHTBCSSCEEEECCCTTHH-HHHHHHHHGGGCCTTCEEEECSCCCHHHHHHHHHHTT
T ss_pred             HhhccCCCEEEEEccCchH-HHHHHHHHHhhCCCCCEEEECCCCCHHHHHHHHHHHH
Confidence            33   49999999998654 456778899999999999988887754  45666664

>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri}

Probab=99.08  E-value=1.7e-10  Score=107.69  Aligned_cols=104  Identities=14%  Similarity=0.178  Sum_probs=77.9

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CCCCC
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DPFKN  299 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~l~~  299 (359)
                      ++|+|||+|.||..++..+.+.|++|++||+++++++...+           .             .+...++. +.+.+
T Consensus         5 ~~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~-----------~-------------g~~~~~~~~~~~~~   60 (301)
T 3cky_A            5 IKIGFIGLGAMGKPMAINLLKEGVTVYAFDLMEANVAAVVA-----------Q-------------GAQACENNQKVAAA   60 (301)
T ss_dssp             CEEEEECCCTTHHHHHHHHHHTTCEEEEECSSHHHHHHHHT-----------T-------------TCEECSSHHHHHHH
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHH-----------C-------------CCeecCCHHHHHhC
Confidence            58999999999999999999999999999999987665321           0             12233444 44678


Q ss_pred             ccEEEEcccCCHHHHHHHH--HHHHHhCCCCcEEEEcCCCCc--HHHHHhhcC
Q psy9056         300 ADMVIEAVFEDINIKHQVI--KEIEAVVPPHCVVATNTSAIP--ITKIAAASK  348 (359)
Q Consensus       300 aD~Vi~avp~~~~~k~~v~--~~l~~~~~~~~ii~s~ts~~~--~~~l~~~~~  348 (359)
                      +|+||+|+|.+..+...+.  +++.+.++++++|++.+++.+  ...+.+.+.
T Consensus        61 ~D~vi~~vp~~~~~~~v~~~~~~l~~~l~~~~~vv~~~~~~~~~~~~l~~~~~  113 (301)
T 3cky_A           61 SDIIFTSLPNAGIVETVMNGPGGVLSACKAGTVIVDMSSVSPSSTLKMAKVAA  113 (301)
T ss_dssp             CSEEEECCSSHHHHHHHHHSTTCHHHHSCTTCEEEECCCCCHHHHHHHHHHHH
T ss_pred             CCEEEEECCCHHHHHHHHcCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHH
Confidence            9999999997765443333  278888899999999888873  345655543

>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}

Probab=99.08  E-value=9.8e-11  Score=111.44  Aligned_cols=108  Identities=18%  Similarity=0.141  Sum_probs=76.9

Q ss_pred             CCccEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcCCC
Q psy9056         218 TPVKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPF  297 (359)
Q Consensus       218 ~~~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l  297 (359)
                      |.++||+|||+|.||+.+|..|+++|++|++|+++ +.++...+           .|............++..+++.+.+
T Consensus         1 M~~mkI~IiGaG~~G~~~a~~L~~~g~~V~~~~r~-~~~~~~~~-----------~g~~~~~~~~~~~~~~~~~~~~~~~   68 (335)
T 3ghy_A            1 MSLTRICIVGAGAVGGYLGARLALAGEAINVLARG-ATLQALQT-----------AGLRLTEDGATHTLPVRATHDAAAL   68 (335)
T ss_dssp             -CCCCEEEESCCHHHHHHHHHHHHTTCCEEEECCH-HHHHHHHH-----------TCEEEEETTEEEEECCEEESCHHHH
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHHCCCEEEEEECh-HHHHHHHH-----------CCCEEecCCCeEEEeeeEECCHHHc
Confidence            34579999999999999999999999999999986 45443321           1100000000011124445566557


Q ss_pred             CCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCc
Q psy9056         298 KNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIP  339 (359)
Q Consensus       298 ~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~  339 (359)
                      .++|+||+|+|..  ..+++++++.++++++++|++.++|++
T Consensus        69 ~~~D~Vilavk~~--~~~~~~~~l~~~l~~~~~iv~~~nGi~  108 (335)
T 3ghy_A           69 GEQDVVIVAVKAP--ALESVAAGIAPLIGPGTCVVVAMNGVP  108 (335)
T ss_dssp             CCCSEEEECCCHH--HHHHHHGGGSSSCCTTCEEEECCSSSC
T ss_pred             CCCCEEEEeCCch--hHHHHHHHHHhhCCCCCEEEEECCCCc
Confidence            8899999999864  366888999999999999999999963

>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*

Probab=99.07  E-value=5.2e-10  Score=105.39  Aligned_cols=123  Identities=20%  Similarity=0.183  Sum_probs=83.3

Q ss_pred             cEEEEECCCcchHHHHHHHHHC--CCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcCCCC
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDK--GYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPFK  298 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~--G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~  298 (359)
                      +||+|||+|.||.++|..++.+  |++|++||+++++++.....+.+.....            ....++..++++++++
T Consensus         1 mkI~VIGaG~vG~~la~~la~~~~g~~V~l~D~~~~~~~~~~~~l~~~~~~~------------~~~~~i~~t~d~~~l~   68 (310)
T 1guz_A            1 MKITVIGAGNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVG------------LFDTKVTGSNDYADTA   68 (310)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHHH------------TCCCEEEEESCGGGGT
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHhHHhhhhcc------------cCCcEEEECCCHHHHC
Confidence            3899999999999999999996  7999999999988775432222211100            0112466677887799


Q ss_pred             CccEEEEcccCC--------------HHHHHHHHHHHHHhCCCCcEEEEcCCCCcH-HH-HHhhcC-CCCcEEee
Q psy9056         299 NADMVIEAVFED--------------INIKHQVIKEIEAVVPPHCVVATNTSAIPI-TK-IAAASK-RPDKVRNM  356 (359)
Q Consensus       299 ~aD~Vi~avp~~--------------~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~-~~-l~~~~~-~~~rvig~  356 (359)
                      +||+||+++|..              ..+.+++.+.+.+++ ++.+|+..|++..+ .. +.+... ++.|++|+
T Consensus        69 ~aDvViiav~~p~~~g~~r~dl~~~n~~i~~~i~~~i~~~~-~~~~viv~tNP~~~~~~~~~~~~~~~~~rviG~  142 (310)
T 1guz_A           69 NSDIVIITAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKHS-KNPIIIVVSNPLDIMTHVAWVRSGLPKERVIGM  142 (310)
T ss_dssp             TCSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHC-SSCEEEECCSSHHHHHHHHHHHHCSCGGGEEEE
T ss_pred             CCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEEcCchHHHHHHHHHhcCCChHHEEEC
Confidence            999999999642              255677888898886 55655555554333 22 223233 35789886

>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*

Probab=99.07  E-value=1.3e-09  Score=102.71  Aligned_cols=123  Identities=19%  Similarity=0.333  Sum_probs=85.6

Q ss_pred             ccEEEEECCCcchHHHHHHHHHCCC--eeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcCCC
Q psy9056         220 VKTVAVLGAGLMGAGIAHVTVDKGY--NTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPF  297 (359)
Q Consensus       220 ~~kI~IIG~G~mG~~iA~~l~~~G~--~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l  297 (359)
                      ++||+|||+|.||..++..|+.+|+  +|+++|+++++++.....+.+.+.       +..      ..++..+++++++
T Consensus         7 ~mkI~IiGaG~vG~~~a~~l~~~g~~~~V~l~d~~~~~~~~~~~~~~~~~~-------~~~------~~~v~~~~~~~~~   73 (319)
T 1lld_A            7 PTKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSS-------FYP------TVSIDGSDDPEIC   73 (319)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTGG-------GST------TCEEEEESCGGGG
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHHHHhhhh-------hcC------CeEEEeCCCHHHh
Confidence            3699999999999999999999999  999999998776532111222110       000      0134444466778


Q ss_pred             CCccEEEEcccC--------------CHHHHHHHHHHHHHhCCCCcEEEEcCCCCcHHH-HHhh-cC-CCCcEEee
Q psy9056         298 KNADMVIEAVFE--------------DINIKHQVIKEIEAVVPPHCVVATNTSAIPITK-IAAA-SK-RPDKVRNM  356 (359)
Q Consensus       298 ~~aD~Vi~avp~--------------~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~-l~~~-~~-~~~rvig~  356 (359)
                      .++|+||+++..              +..+++++++.+.++ .++++|++.++++...+ +... .. ++.+++|+
T Consensus        74 ~~aD~Vii~v~~~~~~g~~r~~~~~~n~~~~~~~~~~i~~~-~~~~~vi~~~Np~~~~~~~~~~~~~~~~~~vig~  148 (319)
T 1lld_A           74 RDADMVVITAGPRQKPGQSRLELVGATVNILKAIMPNLVKV-APNAIYMLITNPVDIATHVAQKLTGLPENQIFGS  148 (319)
T ss_dssp             TTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHH-CTTSEEEECCSSHHHHHHHHHHHHTCCTTSEEEC
T ss_pred             CCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCceEEEecCchHHHHHHHHHhcCCCHHHEeec
Confidence            999999999932              235667888899887 67888888888877653 3332 12 35688875

>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida}

Probab=99.07  E-value=2.1e-10  Score=107.90  Aligned_cols=96  Identities=17%  Similarity=0.175  Sum_probs=71.1

Q ss_pred             CCccEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CC
Q psy9056         218 TPVKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DP  296 (359)
Q Consensus       218 ~~~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~  296 (359)
                      ..+++|+|||+|.||.++|..|+++|++|++||+++++++.+..           .             .+...++. +.
T Consensus         7 ~~~~~IgiIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~~~~-----------~-------------g~~~~~~~~e~   62 (306)
T 3l6d_A            7 SFEFDVSVIGLGAMGTIMAQVLLKQGKRVAIWNRSPGKAAALVA-----------A-------------GAHLCESVKAA   62 (306)
T ss_dssp             CCSCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHH-----------H-------------TCEECSSHHHH
T ss_pred             cCCCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH-----------C-------------CCeecCCHHHH
Confidence            34578999999999999999999999999999999998776432           1             12334444 45


Q ss_pred             CCCccEEEEcccCCHHHHHHHHH--HHHHhCCCCcEEEEcCCCCc
Q psy9056         297 FKNADMVIEAVFEDINIKHQVIK--EIEAVVPPHCVVATNTSAIP  339 (359)
Q Consensus       297 l~~aD~Vi~avp~~~~~k~~v~~--~l~~~~~~~~ii~s~ts~~~  339 (359)
                      ++++|+||+|+|.+..+ +.++.  .+... .++++|++.++..+
T Consensus        63 ~~~aDvVi~~vp~~~~~-~~v~~~~~l~~~-~~g~ivid~st~~~  105 (306)
T 3l6d_A           63 LSASPATIFVLLDNHAT-HEVLGMPGVARA-LAHRTIVDYTTNAQ  105 (306)
T ss_dssp             HHHSSEEEECCSSHHHH-HHHHTSTTHHHH-TTTCEEEECCCCCT
T ss_pred             HhcCCEEEEEeCCHHHH-HHHhcccchhhc-cCCCEEEECCCCCH
Confidence            78899999999977654 34455  56554 57888776655443

>2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix}

Probab=99.07  E-value=2.8e-10  Score=107.16  Aligned_cols=122  Identities=16%  Similarity=0.238  Sum_probs=84.8

Q ss_pred             EEEEECCCcchHHHHHHHHHCCC-eeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcCCCCCc
Q psy9056         222 TVAVLGAGLMGAGIAHVTVDKGY-NTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPFKNA  300 (359)
Q Consensus       222 kI~IIG~G~mG~~iA~~l~~~G~-~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~a  300 (359)
                      ||+|||+|.||.+++..++.+|+ +|+++|+++++++.....+.+....   .+         ...+++.+++++++++|
T Consensus         1 KI~IiGaG~vG~~~a~~l~~~~l~el~L~Di~~~~~~g~~~dl~~~~~~---~~---------~~~~i~~t~d~~a~~~a   68 (308)
T 2d4a_B            1 MITILGAGKVGMATAVMLMMRGYDDLLLIARTPGKPQGEALDLAHAAAE---LG---------VDIRISGSNSYEDMRGS   68 (308)
T ss_dssp             CEEEECCSHHHHHHHHHHHHHTCSCEEEECSSTTHHHHHHHHHHHHHHH---HT---------CCCCEEEESCGGGGTTC
T ss_pred             CEEEECcCHHHHHHHHHHHhCCCCEEEEEcCChhhHHHHHHHHHHhhhh---cC---------CCeEEEECCCHHHhCCC
Confidence            69999999999999999999998 7999999998876543333322110   00         01245566778889999


Q ss_pred             cEEEEcc--------------cCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCcH--HHHHhhcCC-CCcEEee
Q psy9056         301 DMVIEAV--------------FEDINIKHQVIKEIEAVVPPHCVVATNTSAIPI--TKIAAASKR-PDKVRNM  356 (359)
Q Consensus       301 D~Vi~av--------------p~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~--~~l~~~~~~-~~rvig~  356 (359)
                      |+||++.              ..+..+++++.+++.+++ |+.+++..|+...+  ..+....+. |.|++|+
T Consensus        69 D~Vi~~ag~~~k~G~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~iiv~tNPv~~~t~~~~k~~~~p~~rviG~  140 (308)
T 2d4a_B           69 DIVLVTAGIGRKPGMTREQLLEANANTMADLAEKIKAYA-KDAIVVITTNPVDAMTYVMYKKTGFPRERVIGF  140 (308)
T ss_dssp             SEEEECCSCCCCSSCCTHHHHHHHHHHHHHHHHHHHHHC-TTCEEEECCSSHHHHHHHHHHHHCCCGGGEEEC
T ss_pred             CEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEeCCchHHHHHHHHHhcCCChhhEEEe
Confidence            9999994              445667889999999997 56654444443332  233333333 5799987

>3viv_A 441AA long hypothetical NFED protein; protein-peptide complex, alpha / beta motif, protease, membr protein stomatin, hydrolase-protein binding complex; 2.25A {Pyrococcus horikoshii} PDB: 3bpp_A 2deo_A

Probab=99.06  E-value=1.2e-10  Score=104.82  Aligned_cols=79  Identities=18%  Similarity=0.263  Sum_probs=68.0

Q ss_pred             CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchH---------------hHHhhhcCh--HHHHHHHhcCC
Q psy9056           1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGT---------------QRLPKLTAL--PNVLDMTLTGK   63 (359)
Q Consensus         1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~---------------~~l~~~~g~--~~a~~~~ltg~   63 (359)
                      |.|.|+|+.|+++||+|+|.++  ++|+.+++..++ |..|.+               ..+++..|.  ..+.+++.+++
T Consensus        79 G~AasaG~~ia~a~d~~~a~p~--a~ig~~~p~~~~-~~~G~~~~~~~k~~~~~~~~~~~la~~~Gr~~~~a~~~~~~~~  155 (230)
T 3viv_A           79 ASAASAGTYIALGSHLIAMAPG--TSIGACRPILGY-SQNGSIIEAPPAITNYFIAYIKSLAQESGRNATIAEEFITKDL  155 (230)
T ss_dssp             CEEETHHHHHHHTSSEEEECTT--CEEECCCEEEEE-CTTSCEEECCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHTCC
T ss_pred             CEEhHHHHHHHHhcCceeECCC--CEEEeccceecC-CCCCCchHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHhcCC
Confidence            5789999999999999999988  999999998643 444532               247777885  78999999999


Q ss_pred             CCCHHHHHHcCCcceecCC
Q psy9056          64 TLKADKAKKMGIVDQLVEP   82 (359)
Q Consensus        64 ~~~a~eA~~~Glv~~~~~~   82 (359)
                      .|+|+||+++||||+++++
T Consensus       156 ~ltA~EAle~GliD~V~~~  174 (230)
T 3viv_A          156 SLTPEEALKYGVIEVVARD  174 (230)
T ss_dssp             EECHHHHHHTTSCSEECSS
T ss_pred             eecHHHHHHcCCceEecCC
Confidence            9999999999999999987

>2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans}

Probab=99.06  E-value=1.9e-10  Score=114.74  Aligned_cols=109  Identities=19%  Similarity=0.166  Sum_probs=79.1

Q ss_pred             CCccEEEEECCCcchHHHHHHHHHC--CCeeEEecCCHHHHHHHHHHHH----HhHHHHHhhccCChHHHHhhhcccccc
Q psy9056         218 TPVKTVAVLGAGLMGAGIAHVTVDK--GYNTIVKDSFEKGLARGLGQIK----TGLDGAVKRKKMSALDRDRYLASLVGT  291 (359)
Q Consensus       218 ~~~~kI~IIG~G~mG~~iA~~l~~~--G~~V~l~d~~~~~l~~~~~~~~----~~l~~~~~~~~~~~~~~~~~~~~i~~~  291 (359)
                      +.++||+|||+|+||.++|..|+++  |++|++||+++++++.+.+...    ..++.....         ....++.++
T Consensus         7 ~~~mkI~VIG~G~vG~~~A~~La~~g~g~~V~~~D~~~~~v~~l~~g~~~i~e~gl~~~~~~---------~~~~~l~~t   77 (481)
T 2o3j_A            7 GKVSKVVCVGAGYVGGPTCAMIAHKCPHITVTVVDMNTAKIAEWNSDKLPIYEPGLDEIVFA---------ARGRNLFFS   77 (481)
T ss_dssp             CCCCEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCHHHHHHHTSSSCSSCCTTHHHHHHH---------HBTTTEEEE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHH---------hhcCCEEEE
Confidence            4467999999999999999999998  7999999999998776542100    000000000         001246777


Q ss_pred             cCc-CCCCCccEEEEcccCCH-------------HHHHHHHHHHHHhCCCCcEEEEcC
Q psy9056         292 LSY-DPFKNADMVIEAVFEDI-------------NIKHQVIKEIEAVVPPHCVVATNT  335 (359)
Q Consensus       292 ~~~-~~l~~aD~Vi~avp~~~-------------~~k~~v~~~l~~~~~~~~ii~s~t  335 (359)
                      +++ +.++++|+||+|+|...             .....+++.|.++++++++|+..|
T Consensus        78 ~~~~~~~~~aDvvii~Vptp~~~~g~~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~~S  135 (481)
T 2o3j_A           78 SDIPKAIAEADLIFISVNTPTKMYGRGKGMAPDLKYVESVSRTIAQYAGGPKIVVEKS  135 (481)
T ss_dssp             SCHHHHHHHCSEEEECCCCCBCCSSTTTTTSBCCHHHHHHHHHHHHHCCSCEEEEECS
T ss_pred             CCHHHHhhcCCEEEEecCCccccccccccCCCcHHHHHHHHHHHHHhCCCCCEEEECC
Confidence            776 66889999999998753             246788899999999999887544

>4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A

Probab=99.06  E-value=3.1e-10  Score=112.89  Aligned_cols=103  Identities=14%  Similarity=0.178  Sum_probs=78.0

Q ss_pred             CCccEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcC--
Q psy9056         218 TPVKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYD--  295 (359)
Q Consensus       218 ~~~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~--  295 (359)
                      +.+++|+|||+|.||.+||..|+++|++|++||+++++++.+.+.           +...        .++..+++.+  
T Consensus         2 ~~~~kIgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~-----------g~~g--------~~i~~~~s~~e~   62 (484)
T 4gwg_A            2 NAQADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLAN-----------EAKG--------TKVVGAQSLKEM   62 (484)
T ss_dssp             -CCBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHHT-----------TTTT--------SSCEECSSHHHH
T ss_pred             CCCCEEEEEChhHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhc-----------ccCC--------CceeccCCHHHH
Confidence            356799999999999999999999999999999999987764331           0000        0233334442  


Q ss_pred             --CCCCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCcH
Q psy9056         296 --PFKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPI  340 (359)
Q Consensus       296 --~l~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~  340 (359)
                        .++++|+||+|+|.... .+.+++++.++++++.+|++.+++.+.
T Consensus        63 v~~l~~aDvVil~Vp~~~~-v~~vl~~l~~~L~~g~iIId~st~~~~  108 (484)
T 4gwg_A           63 VSKLKKPRRIILLVKAGQA-VDDFIEKLVPLLDTGDIIIDGGNSEYR  108 (484)
T ss_dssp             HHTBCSSCEEEECSCSSHH-HHHHHHHHGGGCCTTCEEEECSCCCHH
T ss_pred             HhhccCCCEEEEecCChHH-HHHHHHHHHHhcCCCCEEEEcCCCCch
Confidence              24579999999998754 456789999999999999988887754

>3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum}

Probab=99.05  E-value=3.2e-10  Score=111.26  Aligned_cols=106  Identities=17%  Similarity=0.108  Sum_probs=78.7

Q ss_pred             CCccEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHH--------HHhHHHHHhhccCChHHHHhhhcccc
Q psy9056         218 TPVKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQI--------KTGLDGAVKRKKMSALDRDRYLASLV  289 (359)
Q Consensus       218 ~~~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~--------~~~l~~~~~~~~~~~~~~~~~~~~i~  289 (359)
                      .+|.+|+|||+|++|.++|..|+++||+|+++|+|+++++.+.+..        ...+.+...            .+++.
T Consensus        19 ~~m~~IaViGlGYVGLp~A~~~A~~G~~V~g~Did~~kV~~ln~G~~pi~Epgl~ell~~~~~------------~g~l~   86 (444)
T 3vtf_A           19 SHMASLSVLGLGYVGVVHAVGFALLGHRVVGYDVNPSIVERLRAGRPHIYEPGLEEALGRALS------------SGRLS   86 (444)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHHTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHH------------TTCEE
T ss_pred             CCCCEEEEEccCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHCCCCCCCCCCHHHHHHHHHH------------cCCee
Confidence            5789999999999999999999999999999999999988765421        111211111            24678


Q ss_pred             cccCc-CCCCCccEEEEcccC--------CHHHHHHHHHHHHHhCC---CCcEEEEcC
Q psy9056         290 GTLSY-DPFKNADMVIEAVFE--------DINIKHQVIKEIEAVVP---PHCVVATNT  335 (359)
Q Consensus       290 ~~~~~-~~l~~aD~Vi~avp~--------~~~~k~~v~~~l~~~~~---~~~ii~s~t  335 (359)
                      ++++. ++++++|++|+|||.        |+.....+.+.|.++++   ++++|+.-|
T Consensus        87 ~tt~~~~ai~~ad~~~I~VpTP~~~d~~~Dl~~v~~a~~~I~~~l~~~~~g~lVV~eS  144 (444)
T 3vtf_A           87 FAESAEEAVAATDATFIAVGTPPAPDGSADLRYVEAAARAVGRGIRAKGRWHLVVVKS  144 (444)
T ss_dssp             ECSSHHHHHHTSSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHHHHHCSCCEEEECS
T ss_pred             EEcCHHHHHhcCCceEEEecCCCCCCCCCCcHHHHHHHHHHHHHHhhcCCCeEEEEeC
Confidence            88887 568999999999975        34456677777777663   455665433

>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*

Probab=99.04  E-value=3.6e-10  Score=111.44  Aligned_cols=106  Identities=19%  Similarity=0.230  Sum_probs=75.9

Q ss_pred             EEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHH----hHHHHHhhccCChHHHHhhhcccccccCcC-C
Q psy9056         222 TVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKT----GLDGAVKRKKMSALDRDRYLASLVGTLSYD-P  296 (359)
Q Consensus       222 kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~----~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~  296 (359)
                      ||+|||+|+||.++|..|+++|++|++||+++++++.+.+....    .++......        ...+++.++++++ .
T Consensus         2 kI~VIG~G~vG~~~A~~la~~G~~V~~~d~~~~~~~~l~~~~~~i~e~~l~~~~~~~--------~~~g~l~~t~~~~~~   73 (436)
T 1mv8_A            2 RISIFGLGYVGAVCAGCLSARGHEVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQG--------RQTGRLSGTTDFKKA   73 (436)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHH--------HHTTCEEEESCHHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHhCCCCCcCCCCHHHHHHhh--------cccCceEEeCCHHHH
Confidence            89999999999999999999999999999999987765431000    000000000        0023467777774 6


Q ss_pred             CCCccEEEEcccCCHH--------HHHHHHHHHHHhCCC---CcEEEEcC
Q psy9056         297 FKNADMVIEAVFEDIN--------IKHQVIKEIEAVVPP---HCVVATNT  335 (359)
Q Consensus       297 l~~aD~Vi~avp~~~~--------~k~~v~~~l~~~~~~---~~ii~s~t  335 (359)
                      ++++|+||+|+|.+..        ..+.+++++.+++++   +++|++.+
T Consensus        74 ~~~aDvviiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~~~~~~iVV~~S  123 (436)
T 1mv8_A           74 VLDSDVSFICVGTPSKKNGDLDLGYIETVCREIGFAIREKSERHTVVVRS  123 (436)
T ss_dssp             HHTCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHHTTCCSCCEEEECS
T ss_pred             hccCCEEEEEcCCCcccCCCcchHHHHHHHHHHHHHhcccCCCcEEEEeC
Confidence            8899999999987653        245677889888888   88887554

>2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A*

Probab=99.04  E-value=2.5e-10  Score=106.30  Aligned_cols=97  Identities=23%  Similarity=0.213  Sum_probs=72.8

Q ss_pred             EEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CCCCCc
Q psy9056         222 TVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DPFKNA  300 (359)
Q Consensus       222 kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~l~~a  300 (359)
                      +|+|||+|.||..++..|+++|++|++||+++++++...+           .             .+..+++. +.++++
T Consensus         2 ~i~iiG~G~mG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~-----------~-------------g~~~~~~~~~~~~~~   57 (296)
T 2gf2_A            2 PVGFIGLGNMGNPMAKNLMKHGYPLIIYDVFPDACKEFQD-----------A-------------GEQVVSSPADVAEKA   57 (296)
T ss_dssp             CEEEECCSTTHHHHHHHHHHTTCCEEEECSSTHHHHHHHT-----------T-------------TCEECSSHHHHHHHC
T ss_pred             eEEEEeccHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH-----------c-------------CCeecCCHHHHHhcC
Confidence            7999999999999999999999999999999987665321           0             13334444 446789


Q ss_pred             cEEEEcccCCHHHHHHHHHH---HHHhCCCCcEEEEcCCCCcHHHHH
Q psy9056         301 DMVIEAVFEDINIKHQVIKE---IEAVVPPHCVVATNTSAIPITKIA  344 (359)
Q Consensus       301 D~Vi~avp~~~~~k~~v~~~---l~~~~~~~~ii~s~ts~~~~~~l~  344 (359)
                      |+||+|+|.+..+ +.++.+   +.+.++++++|++ ++++++....
T Consensus        58 Dvvi~~vp~~~~~-~~v~~~~~~~~~~l~~~~~vv~-~s~~~~~~~~  102 (296)
T 2gf2_A           58 DRIITMLPTSINA-IEAYSGANGILKKVKKGSLLID-SSTIDPAVSK  102 (296)
T ss_dssp             SEEEECCSSHHHH-HHHHHSTTSGGGTCCTTCEEEE-CSCCCHHHHH
T ss_pred             CEEEEeCCCHHHH-HHHHhCchhHHhcCCCCCEEEE-CCCCCHHHHH
Confidence            9999999876654 445554   3446788999888 7787775443

>1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima}

Probab=99.03  E-value=3.5e-10  Score=107.49  Aligned_cols=102  Identities=17%  Similarity=0.159  Sum_probs=72.4

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcCCCCCc
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPFKNA  300 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~a  300 (359)
                      .||+|||+|+||+.+|..|+++|++|++||+++++++...+...+.   +.. +.        .. ++..+++.+.+.++
T Consensus        15 ~kI~iIG~G~mG~ala~~L~~~G~~V~~~~r~~~~~~~l~~~g~~~---~~~-~~--------~~-~~~~~~~~~~~~~a   81 (335)
T 1z82_A           15 MRFFVLGAGSWGTVFAQMLHENGEEVILWARRKEIVDLINVSHTSP---YVE-ES--------KI-TVRATNDLEEIKKE   81 (335)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHSCBT---TBT-TC--------CC-CSEEESCGGGCCTT
T ss_pred             CcEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHhCCcc---cCC-CC--------ee-eEEEeCCHHHhcCC
Confidence            4899999999999999999999999999999998876643310000   000 00        00 24455565338899


Q ss_pred             cEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCcH
Q psy9056         301 DMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPI  340 (359)
Q Consensus       301 D~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~  340 (359)
                      |+||.|+|...  .++++.++.+   ++++|++.++|+..
T Consensus        82 DvVil~vk~~~--~~~v~~~l~~---~~~~vv~~~nGi~~  116 (335)
T 1z82_A           82 DILVIAIPVQY--IREHLLRLPV---KPSMVLNLSKGIEI  116 (335)
T ss_dssp             EEEEECSCGGG--HHHHHTTCSS---CCSEEEECCCCCCT
T ss_pred             CEEEEECCHHH--HHHHHHHhCc---CCCEEEEEeCCCCC
Confidence            99999998633  5666666544   68888888877664

>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}

Probab=99.02  E-value=2.5e-10  Score=107.55  Aligned_cols=115  Identities=15%  Similarity=0.127  Sum_probs=80.2

Q ss_pred             CccEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CCC
Q psy9056         219 PVKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DPF  297 (359)
Q Consensus       219 ~~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~l  297 (359)
                      .+++|+|||+|.||..++..+.+.|++|++||+++++++...+           .+             +...++. +.+
T Consensus        29 ~~~~I~iIG~G~mG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~-----------~g-------------~~~~~~~~~~~   84 (316)
T 2uyy_A           29 TDKKIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFIQ-----------EG-------------ARLGRTPAEVV   84 (316)
T ss_dssp             CSSCEEEECCSHHHHHHHHHHHHTTCCEEEECSSGGGGHHHHH-----------TT-------------CEECSCHHHHH
T ss_pred             CCCeEEEEcccHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHH-----------cC-------------CEEcCCHHHHH
Confidence            3578999999999999999999999999999999987654321           11             1223333 446


Q ss_pred             CCccEEEEcccCCHHHHHHHHHHH---HHhCCCCcEEEEcCCCCc--HHHHHhhcC-CCCcEEeecC
Q psy9056         298 KNADMVIEAVFEDINIKHQVIKEI---EAVVPPHCVVATNTSAIP--ITKIAAASK-RPDKVRNMGR  358 (359)
Q Consensus       298 ~~aD~Vi~avp~~~~~k~~v~~~l---~~~~~~~~ii~s~ts~~~--~~~l~~~~~-~~~rvig~h~  358 (359)
                      +++|+||+|+|++..+ +.++..+   .+.+.++++|++.+++.+  ...+.+.+. .+.++++.++
T Consensus        85 ~~~DvVi~av~~~~~~-~~v~~~~~~~~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~~~~~v~~p~  150 (316)
T 2uyy_A           85 STCDITFACVSDPKAA-KDLVLGPSGVLQGIRPGKCYVDMSTVDADTVTELAQVIVSRGGRFLEAPV  150 (316)
T ss_dssp             HHCSEEEECCSSHHHH-HHHHHSTTCGGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEECCE
T ss_pred             hcCCEEEEeCCCHHHH-HHHHcCchhHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCEEEEcCc
Confidence            7899999999976654 4444443   367788898887766543  345555553 3456666553

>1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6

Probab=99.02  E-value=2.3e-10  Score=109.13  Aligned_cols=110  Identities=20%  Similarity=0.190  Sum_probs=79.4

Q ss_pred             ccEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHH-HHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CCC
Q psy9056         220 VKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKG-LARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DPF  297 (359)
Q Consensus       220 ~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~-l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~l  297 (359)
                      .++|+|||+|+||.++|..+..+|++|+++|++++. .+.+.           +.|             +..+ +. +.+
T Consensus        16 ~~~I~IIG~G~mG~alA~~L~~~G~~V~~~~~~~~~~~~~a~-----------~~G-------------~~~~-~~~e~~   70 (338)
T 1np3_A           16 GKKVAIIGYGSQGHAHACNLKDSGVDVTVGLRSGSATVAKAE-----------AHG-------------LKVA-DVKTAV   70 (338)
T ss_dssp             TSCEEEECCSHHHHHHHHHHHHTTCCEEEECCTTCHHHHHHH-----------HTT-------------CEEE-CHHHHH
T ss_pred             CCEEEEECchHHHHHHHHHHHHCcCEEEEEECChHHHHHHHH-----------HCC-------------CEEc-cHHHHH
Confidence            358999999999999999999999999999999765 22211           111             2222 33 457


Q ss_pred             CCccEEEEcccCCHHHHHHHHH-HHHHhCCCCcEEEEcCCCCcHHHHHhhc-CCCCcEEeecC
Q psy9056         298 KNADMVIEAVFEDINIKHQVIK-EIEAVVPPHCVVATNTSAIPITKIAAAS-KRPDKVRNMGR  358 (359)
Q Consensus       298 ~~aD~Vi~avp~~~~~k~~v~~-~l~~~~~~~~ii~s~ts~~~~~~l~~~~-~~~~rvig~h~  358 (359)
                      +++|+||+|+|.+.  ...+++ ++.++++++++|++. +|+.+ .+.... +...++++.|+
T Consensus        71 ~~aDvVilavp~~~--~~~v~~~~i~~~l~~~~ivi~~-~gv~~-~~~~~~~~~~~~vv~~~P  129 (338)
T 1np3_A           71 AAADVVMILTPDEF--QGRLYKEEIEPNLKKGATLAFA-HGFSI-HYNQVVPRADLDVIMIAP  129 (338)
T ss_dssp             HTCSEEEECSCHHH--HHHHHHHHTGGGCCTTCEEEES-CCHHH-HTTSSCCCTTCEEEEEEE
T ss_pred             hcCCEEEEeCCcHH--HHHHHHHHHHhhCCCCCEEEEc-CCchh-HHHhhcCCCCcEEEeccC
Confidence            89999999999766  468888 898999999988876 55555 333322 11235888886

>2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae}

Probab=99.02  E-value=5.4e-10  Score=111.83  Aligned_cols=107  Identities=14%  Similarity=0.177  Sum_probs=79.8

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CCCC-
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DPFK-  298 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~l~-  298 (359)
                      .+|+|||+|.||.+||..|+++|++|++||+++++++.+.+...       . +           .++..+++. +.++ 
T Consensus        11 ~~IgvIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~-------~-~-----------~gi~~~~s~~e~v~~   71 (497)
T 2p4q_A           11 ADFGLIGLAVMGQNLILNAADHGFTVCAYNRTQSKVDHFLANEA-------K-G-----------KSIIGATSIEDFISK   71 (497)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSHHHHHHHHTTT-------T-T-----------SSEECCSSHHHHHHT
T ss_pred             CCEEEEeeHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHcccc-------c-C-----------CCeEEeCCHHHHHhc
Confidence            48999999999999999999999999999999998776432000       0 0           124445555 3334 


Q ss_pred             --CccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCcH--HHHHhhc
Q psy9056         299 --NADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPI--TKIAAAS  347 (359)
Q Consensus       299 --~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~--~~l~~~~  347 (359)
                        .+|+||+|||.... .+.+++++.++++++++|++.+++.+.  ..+.+.+
T Consensus        72 l~~aDvVil~Vp~~~~-v~~vl~~l~~~l~~g~iIId~s~~~~~~~~~l~~~l  123 (497)
T 2p4q_A           72 LKRPRKVMLLVKAGAP-VDALINQIVPLLEKGDIIIDGGNSHFPDSNRRYEEL  123 (497)
T ss_dssp             SCSSCEEEECCCSSHH-HHHHHHHHGGGCCTTCEEEECSCCCHHHHHHHHHHH
T ss_pred             CCCCCEEEEEcCChHH-HHHHHHHHHHhCCCCCEEEECCCCChhHHHHHHHHH
Confidence              49999999998654 557778999999999999988887664  3454444

>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6

Probab=99.01  E-value=6.1e-10  Score=103.80  Aligned_cols=103  Identities=20%  Similarity=0.308  Sum_probs=77.8

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CCCCC
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DPFKN  299 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~l~~  299 (359)
                      ++|+|||+|.||..++..+.++|++|++||+++++++...+           .+             +...++. +.+++
T Consensus         6 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~-----------~g-------------~~~~~~~~~~~~~   61 (299)
T 1vpd_A            6 MKVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPEAIADVIA-----------AG-------------AETASTAKAIAEQ   61 (299)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHH-----------TT-------------CEECSSHHHHHHH
T ss_pred             ceEEEECchHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHH-----------CC-------------CeecCCHHHHHhC
Confidence            38999999999999999999999999999999987665432           01             2233444 44678


Q ss_pred             ccEEEEcccCCHHHHHHHH---HHHHHhCCCCcEEEEcCCCCcH--HHHHhhcC
Q psy9056         300 ADMVIEAVFEDINIKHQVI---KEIEAVVPPHCVVATNTSAIPI--TKIAAASK  348 (359)
Q Consensus       300 aD~Vi~avp~~~~~k~~v~---~~l~~~~~~~~ii~s~ts~~~~--~~l~~~~~  348 (359)
                      +|+||+|+|.+..+ +.++   +++.+.++++++|++.+++.+.  ..+.+.+.
T Consensus        62 ~D~vi~~v~~~~~~-~~~~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~l~~~~~  114 (299)
T 1vpd_A           62 CDVIITMLPNSPHV-KEVALGENGIIEGAKPGTVLIDMSSIAPLASREISDALK  114 (299)
T ss_dssp             CSEEEECCSSHHHH-HHHHHSTTCHHHHCCTTCEEEECSCCCHHHHHHHHHHHH
T ss_pred             CCEEEEECCCHHHH-HHHHhCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHH
Confidence            99999999976654 3444   5688888999999888877653  45655543

>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A*

Probab=99.01  E-value=1.2e-09  Score=102.03  Aligned_cols=123  Identities=16%  Similarity=0.200  Sum_probs=85.3

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCC--eeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcCCCC
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGY--NTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPFK  298 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~--~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~  298 (359)
                      +||+|||+|.||.++|..++.+|+  +|.+||+++++++.....+++....+   .         ...++..++|+++++
T Consensus         1 MkI~ViGaG~vG~~la~~l~~~~~~~~v~L~D~~~~~~~g~~~dl~~~~~~~---~---------~~~~i~~t~d~~a~~   68 (294)
T 1oju_A            1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGI---D---------KYPKIVGGADYSLLK   68 (294)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTT---T---------CCCEEEEESCGGGGT
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCeEEEEECChHHHHHHHHHHHhhhhhc---C---------CCCEEEEeCCHHHhC
Confidence            389999999999999999999998  99999999988764333333221100   0         012456566788999


Q ss_pred             CccEEEEcccC--------------CHHHHHHHHHHHHHhCCCCcEEEEcCCCCcH--HHHHhhcCC-CCcEEee
Q psy9056         299 NADMVIEAVFE--------------DINIKHQVIKEIEAVVPPHCVVATNTSAIPI--TKIAAASKR-PDKVRNM  356 (359)
Q Consensus       299 ~aD~Vi~avp~--------------~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~--~~l~~~~~~-~~rvig~  356 (359)
                      +||+||++...              +..+.+++.+.+.+++ |+.+|+..|+...+  ..+....+. +.|++|+
T Consensus        69 ~aDiVViaag~~~kpG~~R~dl~~~N~~i~~~i~~~i~~~~-p~a~iivvsNPvd~~t~~~~k~~g~p~~rviG~  142 (294)
T 1oju_A           69 GSEIIVVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVENA-PESKILVVTNPMDVMTYIMWKESGKPRNEVFGM  142 (294)
T ss_dssp             TCSEEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHTTS-TTCEEEECSSSHHHHHHHHHHHSCCCTTSEEEC
T ss_pred             CCCEEEECCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEEeCCcchHHHHHHHHhcCCCHHHEeec
Confidence            99999998742              2345667778888885 56766666654433  344444443 5899986

>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*

Probab=99.01  E-value=4.7e-10  Score=99.28  Aligned_cols=115  Identities=17%  Similarity=0.261  Sum_probs=83.9

Q ss_pred             EEEEEC-CCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CCCCC
Q psy9056         222 TVAVLG-AGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DPFKN  299 (359)
Q Consensus       222 kI~IIG-~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~l~~  299 (359)
                      ||+||| +|.||..++..|+++|++|+++|+++++.+...+.+..    ....            ..+.. ++. +.+++
T Consensus         2 ~i~iiGa~G~~G~~ia~~l~~~g~~V~~~~r~~~~~~~~~~~~~~----~~~~------------~~~~~-~~~~~~~~~   64 (212)
T 1jay_A            2 RVALLGGTGNLGKGLALRLATLGHEIVVGSRREEKAEAKAAEYRR----IAGD------------ASITG-MKNEDAAEA   64 (212)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTTTCEEEEEESSHHHHHHHHHHHHH----HHSS------------CCEEE-EEHHHHHHH
T ss_pred             eEEEEcCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcc----cccc------------CCCCh-hhHHHHHhc
Confidence            799999 99999999999999999999999999887665432221    0100            11222 233 44678


Q ss_pred             ccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCc--------------HHHHHhhcCCCCcEEeec
Q psy9056         300 ADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIP--------------ITKIAAASKRPDKVRNMG  357 (359)
Q Consensus       300 aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~--------------~~~l~~~~~~~~rvig~h  357 (359)
                      +|+||+|+|.+.  .+.+++++.+.++ +++|++.+++++              .+.+++.++. .+++..|
T Consensus        65 ~D~Vi~~~~~~~--~~~~~~~l~~~~~-~~~vi~~~~g~~~~~~~~~~~~g~~~~~~l~~~~~~-~~~v~~~  132 (212)
T 1jay_A           65 CDIAVLTIPWEH--AIDTARDLKNILR-EKIVVSPLVPVSRGAKGFTYSSERSAAEIVAEVLES-EKVVSAL  132 (212)
T ss_dssp             CSEEEECSCHHH--HHHHHHHTHHHHT-TSEEEECCCCEECCTTCCEECCSSCHHHHHHHHHTC-SCEEECC
T ss_pred             CCEEEEeCChhh--HHHHHHHHHHHcC-CCEEEEcCCCcCcCCceeecCCCCcHHHHHHHhCCC-CeEEEEc
Confidence            999999998544  5688888877764 889999999877              5777777753 5666653

>2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A*

Probab=99.00  E-value=6e-10  Score=103.19  Aligned_cols=103  Identities=16%  Similarity=0.166  Sum_probs=75.1

Q ss_pred             ccEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcCCCCC
Q psy9056         220 VKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPFKN  299 (359)
Q Consensus       220 ~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~  299 (359)
                      |++|+|||+|.||..++..+.+ |++|++||+++++++...+.           |             +...+..+.+.+
T Consensus         1 M~~i~iiG~G~~G~~~a~~l~~-g~~V~~~~~~~~~~~~~~~~-----------g-------------~~~~~~~~~~~~   55 (289)
T 2cvz_A            1 MEKVAFIGLGAMGYPMAGHLAR-RFPTLVWNRTFEKALRHQEE-----------F-------------GSEAVPLERVAE   55 (289)
T ss_dssp             -CCEEEECCSTTHHHHHHHHHT-TSCEEEECSSTHHHHHHHHH-----------H-------------CCEECCGGGGGG
T ss_pred             CCeEEEEcccHHHHHHHHHHhC-CCeEEEEeCCHHHHHHHHHC-----------C-------------CcccCHHHHHhC
Confidence            4689999999999999999999 99999999999887654321           1             111221245688


Q ss_pred             ccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCc--HHHHHhhcC
Q psy9056         300 ADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIP--ITKIAAASK  348 (359)
Q Consensus       300 aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~--~~~l~~~~~  348 (359)
                      +|+||+|+|.+..+ +.+++++.+.++++++|++.++..+  ...+.+.+.
T Consensus        56 ~D~vi~~v~~~~~~-~~v~~~l~~~l~~~~~vv~~s~~~~~~~~~l~~~~~  105 (289)
T 2cvz_A           56 ARVIFTCLPTTREV-YEVAEALYPYLREGTYWVDATSGEPEASRRLAERLR  105 (289)
T ss_dssp             CSEEEECCSSHHHH-HHHHHHHTTTCCTTEEEEECSCCCHHHHHHHHHHHH
T ss_pred             CCEEEEeCCChHHH-HHHHHHHHhhCCCCCEEEECCCCCHHHHHHHHHHHH
Confidence            99999999976544 4567888888888998886655433  345555544

>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}

Probab=98.99  E-value=9.1e-10  Score=103.69  Aligned_cols=120  Identities=13%  Similarity=0.097  Sum_probs=83.2

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcCCCCCc
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPFKNA  300 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~a  300 (359)
                      +||+|||+|.||+.+|..|+++|++|++|++++  .+...+. .-.+..  ..+..       ....+..+++.+.+..+
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~--~~~i~~~-g~~~~~--~~g~~-------~~~~~~~~~~~~~~~~~   70 (312)
T 3hn2_A            3 LRIAIVGAGALGLYYGALLQRSGEDVHFLLRRD--YEAIAGN-GLKVFS--INGDF-------TLPHVKGYRAPEEIGPM   70 (312)
T ss_dssp             -CEEEECCSTTHHHHHHHHHHTSCCEEEECSTT--HHHHHHT-CEEEEE--TTCCE-------EESCCCEESCHHHHCCC
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCeEEEEEcCc--HHHHHhC-CCEEEc--CCCeE-------EEeeceeecCHHHcCCC
Confidence            589999999999999999999999999999986  2332210 000000  00000       00123344555557889


Q ss_pred             cEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCcH-HHHHhhcCCCCcEEe
Q psy9056         301 DMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPI-TKIAAASKRPDKVRN  355 (359)
Q Consensus       301 D~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~-~~l~~~~~~~~rvig  355 (359)
                      |+||+|+|...  .+++++++.++++++++|++..+|+.. +.+.+.++. .+++.
T Consensus        71 D~vilavk~~~--~~~~l~~l~~~l~~~~~iv~l~nGi~~~~~l~~~~~~-~~v~~  123 (312)
T 3hn2_A           71 DLVLVGLKTFA--NSRYEELIRPLVEEGTQILTLQNGLGNEEALATLFGA-ERIIG  123 (312)
T ss_dssp             SEEEECCCGGG--GGGHHHHHGGGCCTTCEEEECCSSSSHHHHHHHHTCG-GGEEE
T ss_pred             CEEEEecCCCC--cHHHHHHHHhhcCCCCEEEEecCCCCcHHHHHHHCCC-CcEEE
Confidence            99999998766  568999999999999999999999975 566666653 34443

>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*

Probab=98.99  E-value=2.8e-10  Score=101.48  Aligned_cols=97  Identities=15%  Similarity=0.233  Sum_probs=71.6

Q ss_pred             CCccEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CC
Q psy9056         218 TPVKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DP  296 (359)
Q Consensus       218 ~~~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~  296 (359)
                      ..+++|+|||+|.||..++..+.+.|++|+++|+++++++....           .             .+... +. +.
T Consensus        26 ~~~~~I~iiG~G~~G~~la~~l~~~g~~V~~~~r~~~~~~~~~~-----------~-------------g~~~~-~~~~~   80 (215)
T 2vns_A           26 DEAPKVGILGSGDFARSLATRLVGSGFKVVVGSRNPKRTARLFP-----------S-------------AAQVT-FQEEA   80 (215)
T ss_dssp             ---CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSHHHHHHHSB-----------T-------------TSEEE-EHHHH
T ss_pred             CCCCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH-----------c-------------CCcee-cHHHH
Confidence            34568999999999999999999999999999999887554211           0             12222 33 45


Q ss_pred             CCCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCcHHHH
Q psy9056         297 FKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPITKI  343 (359)
Q Consensus       297 l~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~l  343 (359)
                      ++++|+||+|+|.+.  .+.+++ +.... ++++|++.+++++.+.+
T Consensus        81 ~~~~DvVi~av~~~~--~~~v~~-l~~~~-~~~~vv~~s~g~~~~~l  123 (215)
T 2vns_A           81 VSSPEVIFVAVFREH--YSSLCS-LSDQL-AGKILVDVSNPTEQEHL  123 (215)
T ss_dssp             TTSCSEEEECSCGGG--SGGGGG-GHHHH-TTCEEEECCCCCHHHHH
T ss_pred             HhCCCEEEECCChHH--HHHHHH-HHHhc-CCCEEEEeCCCcccccc
Confidence            789999999999643  455554 55555 78899999999887654

>1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6

Probab=98.99  E-value=4.8e-10  Score=106.11  Aligned_cols=100  Identities=18%  Similarity=0.148  Sum_probs=74.9

Q ss_pred             EEEEECCCcchHHHHHHHHHCCCeeEEecC--CHHHHHHHHHHHHHhHHHHHhhcc-CChHHHHhhhccccccc--Cc-C
Q psy9056         222 TVAVLGAGLMGAGIAHVTVDKGYNTIVKDS--FEKGLARGLGQIKTGLDGAVKRKK-MSALDRDRYLASLVGTL--SY-D  295 (359)
Q Consensus       222 kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~--~~~~l~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~i~~~~--~~-~  295 (359)
                      ||+|||+|.||..+|..|+++|++|++||+  ++++++...+.           +. ...+  ... .++..++  +. +
T Consensus         2 ~I~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~-----------~~~~~~g--~~~-~~~~~~~~~~~~~   67 (335)
T 1txg_A            2 IVSILGAGAMGSALSVPLVDNGNEVRIWGTEFDTEILKSISAG-----------REHPRLG--VKL-NGVEIFWPEQLEK   67 (335)
T ss_dssp             EEEEESCCHHHHHHHHHHHHHCCEEEEECCGGGHHHHHHHHTT-----------CCBTTTT--BCC-CSEEEECGGGHHH
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCeEEEEEccCCHHHHHHHHHh-----------CcCcccC--ccc-cceEEecHHhHHH
Confidence            799999999999999999999999999999  88876654321           10 0000  000 1233444  44 4


Q ss_pred             CCCCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCC
Q psy9056         296 PFKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAI  338 (359)
Q Consensus       296 ~l~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~  338 (359)
                      .++++|+||+|+|.+.  ...+++++.+ ++++++|++.++++
T Consensus        68 ~~~~~D~vi~~v~~~~--~~~v~~~i~~-l~~~~~vv~~~ng~  107 (335)
T 1txg_A           68 CLENAEVVLLGVSTDG--VLPVMSRILP-YLKDQYIVLISKGL  107 (335)
T ss_dssp             HHTTCSEEEECSCGGG--HHHHHHHHTT-TCCSCEEEECCCSE
T ss_pred             HHhcCCEEEEcCChHH--HHHHHHHHhc-CCCCCEEEEEcCcC
Confidence            5789999999999875  6788999988 88899998888887

>4fgw_A Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxidoreductase; 2.45A {Saccharomyces cerevisiae}

Probab=98.98  E-value=1.2e-10  Score=112.72  Aligned_cols=110  Identities=16%  Similarity=0.118  Sum_probs=81.9

Q ss_pred             ccEEEEECCCcchHHHHHHHHHCCC--------eeEEecCCHHHHHH-HHHHHHHhH--HHHHhhccCChHHHHhhhccc
Q psy9056         220 VKTVAVLGAGLMGAGIAHVTVDKGY--------NTIVKDSFEKGLAR-GLGQIKTGL--DGAVKRKKMSALDRDRYLASL  288 (359)
Q Consensus       220 ~~kI~IIG~G~mG~~iA~~l~~~G~--------~V~l~d~~~~~l~~-~~~~~~~~l--~~~~~~~~~~~~~~~~~~~~i  288 (359)
                      -.||+|||+|.||+++|..++++|+        +|.+|.++++...+ ..+.++..-  .+++..-        ...+++
T Consensus        34 p~KI~ViGaGsWGTALA~~la~ng~~~~~~~~~~V~lw~r~~e~~~~~~~e~in~~~~N~~YLpgv--------~Lp~~i  105 (391)
T 4fgw_A           34 PFKVTVIGSGNWGTTIAKVVAENCKGYPEVFAPIVQMWVFEEEINGEKLTEIINTRHQNVKYLPGI--------TLPDNL  105 (391)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHHHCTTTEEEEEEEECCCCBSSSCBHHHHHTTTCCBTTTBTTC--------CCCSSE
T ss_pred             CCeEEEECcCHHHHHHHHHHHHcCCCccccCCceEEEEEcchHhhhHHHHHHHHhcCcCcccCCCC--------cCCCCc
Confidence            3499999999999999999999875        59999988753111 111122100  0111111        123578


Q ss_pred             ccccCc-CCCCCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCc
Q psy9056         289 VGTLSY-DPFKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIP  339 (359)
Q Consensus       289 ~~~~~~-~~l~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~  339 (359)
                      .+++|+ ++++++|+||.++|.+.  .+.+++++.++++++.++++.+.|+.
T Consensus       106 ~~t~dl~~al~~ad~ii~avPs~~--~r~~l~~l~~~~~~~~~iv~~~KGie  155 (391)
T 4fgw_A          106 VANPDLIDSVKDVDIIVFNIPHQF--LPRICSQLKGHVDSHVRAISCLKGFE  155 (391)
T ss_dssp             EEESCHHHHHTTCSEEEECSCGGG--HHHHHHHHTTTSCTTCEEEECCCSCE
T ss_pred             EEeCCHHHHHhcCCEEEEECChhh--hHHHHHHhccccCCCceeEEeccccc
Confidence            888888 56899999999999887  88999999999999999999998875

>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A

Probab=98.97  E-value=5e-10  Score=111.39  Aligned_cols=108  Identities=19%  Similarity=0.197  Sum_probs=76.3

Q ss_pred             ccEEEEECCCcchHHHHHHHHHC--CCeeEEecCCHHHHHHHHHHHHH----hHHHHHhhccCChHHHHhhhcccccccC
Q psy9056         220 VKTVAVLGAGLMGAGIAHVTVDK--GYNTIVKDSFEKGLARGLGQIKT----GLDGAVKRKKMSALDRDRYLASLVGTLS  293 (359)
Q Consensus       220 ~~kI~IIG~G~mG~~iA~~l~~~--G~~V~l~d~~~~~l~~~~~~~~~----~l~~~~~~~~~~~~~~~~~~~~i~~~~~  293 (359)
                      |+||+|||+|+||.++|..|+++  |++|++||+++++++...+....    .++.....         ....++.++++
T Consensus         5 ~mkI~VIG~G~mG~~lA~~La~~g~G~~V~~~d~~~~~~~~l~~g~~~i~e~~l~~~~~~---------~~~~~~~~t~~   75 (467)
T 2q3e_A            5 IKKICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVNESRINAWNSPTLPIYEPGLKEVVES---------CRGKNLFFSTN   75 (467)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCHHHHHHHTSSSCSSCCTTHHHHHHH---------HBTTTEEEESC
T ss_pred             ccEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHhCCCCCcCCCCHHHHHHH---------hhcCCEEEECC
Confidence            57999999999999999999999  89999999999987764321000    00000000         00024666777


Q ss_pred             c-CCCCCccEEEEcccCCHH-------------HHHHHHHHHHHhCCCCcEEEEcCC
Q psy9056         294 Y-DPFKNADMVIEAVFEDIN-------------IKHQVIKEIEAVVPPHCVVATNTS  336 (359)
Q Consensus       294 ~-~~l~~aD~Vi~avp~~~~-------------~k~~v~~~l~~~~~~~~ii~s~ts  336 (359)
                      . +.++++|+||+|+|++.+             ....+++++.++++++++|+..|+
T Consensus        76 ~~e~~~~aDvViiaVptp~~~~~v~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~~ST  132 (467)
T 2q3e_A           76 IDDAIKEADLVFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNSNGYKIVTEKST  132 (467)
T ss_dssp             HHHHHHHCSEEEECCCCCBCCSSTTTTTSBCCHHHHHHHHHHHHTCCSEEEEEECSC
T ss_pred             HHHHHhcCCEEEEEcCCchhhccccccCCCcHHHHHHHHHHHHhhCCCCCEEEECCc
Confidence            6 467899999999986553             245777889988999998875543

>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*

Probab=98.97  E-value=1.3e-09  Score=103.07  Aligned_cols=125  Identities=19%  Similarity=0.214  Sum_probs=82.9

Q ss_pred             CCccEEEEECCCcchHHHHHHHHHCCC--eeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcC
Q psy9056         218 TPVKTVAVLGAGLMGAGIAHVTVDKGY--NTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYD  295 (359)
Q Consensus       218 ~~~~kI~IIG~G~mG~~iA~~l~~~G~--~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~  295 (359)
                      .+++||+|||+|.||.+++..++..|.  +|+++|+++++++.....+.+...   ..+.         .-+++ +++++
T Consensus         4 ~~~~kI~IIGaG~vG~sla~~l~~~~~~~ev~l~Di~~~~~~~~~~dl~~~~~---~~~~---------~~~i~-~~~~~   70 (316)
T 1ldn_A            4 NGGARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKV---FAPK---------PVDIW-HGDYD   70 (316)
T ss_dssp             TTSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTT---SSSS---------CCEEE-ECCGG
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCCcchHHHHHhhHHHHhh---hcCC---------CeEEE-cCcHH
Confidence            345799999999999999999999886  899999998865543333332110   0000         01222 34567


Q ss_pred             CCCCccEEEEcccC--------------CHHHHHHHHHHHHHhCCCCcEEEEcCCCCcH--HHHHhhcCC-CCcEEee
Q psy9056         296 PFKNADMVIEAVFE--------------DINIKHQVIKEIEAVVPPHCVVATNTSAIPI--TKIAAASKR-PDKVRNM  356 (359)
Q Consensus       296 ~l~~aD~Vi~avp~--------------~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~--~~l~~~~~~-~~rvig~  356 (359)
                      ++++||+||++++.              +..+++++.+.+.+++ ++.+++..|..+.+  ..+....+. +.|++|+
T Consensus        71 al~~aDvViia~~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~~iv~tNPv~~~~~~~~~~s~~p~~rviG~  147 (316)
T 1ldn_A           71 DCRDADLVVICAGANQKPGETRLDLVDKNIAIFRSIVESVMASG-FQGLFLVATNPVDILTYATWKFSGLPHERVIGS  147 (316)
T ss_dssp             GTTTCSEEEECCSCCCCTTTCSGGGHHHHHHHHHHHHHHHHHHT-CCSEEEECSSSHHHHHHHHHHHHTCCGGGEEEC
T ss_pred             HhCCCCEEEEcCCCCCCCCCCHHHHHHcChHHHHHHHHHHHHHC-CCCEEEEeCCchHHHHHHHHHHhCCCHHHEEec
Confidence            89999999999543              3478889999999997 55655445544332  333343333 5789886

>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}

Probab=98.95  E-value=1.7e-09  Score=102.09  Aligned_cols=121  Identities=13%  Similarity=0.114  Sum_probs=84.0

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcCCC-CC
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPF-KN  299 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l-~~  299 (359)
                      +||+|||+|.||+.+|..|+++|++|++|++++.  +...+. .-.+.. ...+..       .+..+..+++.+.+ +.
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~~--~~i~~~-Gl~~~~-~~~g~~-------~~~~~~~~~~~~~~~~~   71 (320)
T 3i83_A            3 LNILVIGTGAIGSFYGALLAKTGHCVSVVSRSDY--ETVKAK-GIRIRS-ATLGDY-------TFRPAAVVRSAAELETK   71 (320)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHTTCEEEEECSTTH--HHHHHH-CEEEEE-TTTCCE-------EECCSCEESCGGGCSSC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCChH--HHHHhC-CcEEee-cCCCcE-------EEeeeeeECCHHHcCCC
Confidence            5899999999999999999999999999999862  332210 000000 000100       00123345566444 48


Q ss_pred             ccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCcH-HHHHhhcCCCCcEEe
Q psy9056         300 ADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPI-TKIAAASKRPDKVRN  355 (359)
Q Consensus       300 aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~-~~l~~~~~~~~rvig  355 (359)
                      +|+||+|+|...  .+++++++.++++++++|++.++|+.. +.+.+.++. .+++.
T Consensus        72 ~DlVilavK~~~--~~~~l~~l~~~l~~~t~Iv~~~nGi~~~~~l~~~~~~-~~vl~  125 (320)
T 3i83_A           72 PDCTLLCIKVVE--GADRVGLLRDAVAPDTGIVLISNGIDIEPEVAAAFPD-NEVIS  125 (320)
T ss_dssp             CSEEEECCCCCT--TCCHHHHHTTSCCTTCEEEEECSSSSCSHHHHHHSTT-SCEEE
T ss_pred             CCEEEEecCCCC--hHHHHHHHHhhcCCCCEEEEeCCCCChHHHHHHHCCC-CcEEE
Confidence            999999999877  558889999999999999999999975 567777654 35544

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=98.95  E-value=2.3e-09  Score=102.33  Aligned_cols=106  Identities=19%  Similarity=0.126  Sum_probs=75.1

Q ss_pred             CccEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhccc-ccccCc-CC
Q psy9056         219 PVKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASL-VGTLSY-DP  296 (359)
Q Consensus       219 ~~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i-~~~~~~-~~  296 (359)
                      .++||+|||+|.||..+|..|+++|++|++||+++++++...+...  +  .+......      ...++ ..+++. +.
T Consensus         3 ~~mki~iiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~--~--~~~~~~~~------~~~~~~~~~~~~~~~   72 (359)
T 1bg6_A            3 ESKTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRGA--I--IAEGPGLA------GTAHPDLLTSDIGLA   72 (359)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHTS--E--EEESSSCC------EEECCSEEESCHHHH
T ss_pred             CcCeEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHhcCC--e--EEeccccc------cccccceecCCHHHH
Confidence            3469999999999999999999999999999999988776543110  0  00000000      00122 234455 34


Q ss_pred             CCCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCC
Q psy9056         297 FKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTS  336 (359)
Q Consensus       297 l~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts  336 (359)
                      +.++|+||+|+|.+..  .++++++.++++++++|++..+
T Consensus        73 ~~~~D~vi~~v~~~~~--~~~~~~l~~~l~~~~~vv~~~~  110 (359)
T 1bg6_A           73 VKDADVILIVVPAIHH--ASIAANIASYISEGQLIILNPG  110 (359)
T ss_dssp             HTTCSEEEECSCGGGH--HHHHHHHGGGCCTTCEEEESSC
T ss_pred             HhcCCEEEEeCCchHH--HHHHHHHHHhCCCCCEEEEcCC
Confidence            6899999999998874  6888999999999998877744

>1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6

Probab=98.94  E-value=2.4e-09  Score=97.99  Aligned_cols=98  Identities=12%  Similarity=0.129  Sum_probs=69.0

Q ss_pred             EEEEECCCcchHHHHHHHHHCCCeeEEecC--CHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CCCC
Q psy9056         222 TVAVLGAGLMGAGIAHVTVDKGYNTIVKDS--FEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DPFK  298 (359)
Q Consensus       222 kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~--~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~l~  298 (359)
                      +|+|||+|+||.+++..|+++|++|++||+  +++.++...+           .|             +.  ++. +.+.
T Consensus         2 ~I~iIG~G~mG~~la~~l~~~g~~V~~~~~~~~~~~~~~~~~-----------~g-------------~~--~~~~~~~~   55 (264)
T 1i36_A            2 RVGFIGFGEVAQTLASRLRSRGVEVVTSLEGRSPSTIERART-----------VG-------------VT--ETSEEDVY   55 (264)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHH-----------HT-------------CE--ECCHHHHH
T ss_pred             eEEEEechHHHHHHHHHHHHCCCeEEEeCCccCHHHHHHHHH-----------CC-------------Cc--CCHHHHHh
Confidence            799999999999999999999999999999  6666544321           11             11  233 4468


Q ss_pred             CccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCcH---HHHHhhcCCC
Q psy9056         299 NADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPI---TKIAAASKRP  350 (359)
Q Consensus       299 ~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~---~~l~~~~~~~  350 (359)
                      ++|+||+|+|.+...  ..+.++.+.+++  +|++.+ +..+   ..+.+.+...
T Consensus        56 ~aDvvi~~v~~~~~~--~~~~~~~~~~~~--~vi~~s-~~~~~~~~~l~~~~~~~  105 (264)
T 1i36_A           56 SCPVVISAVTPGVAL--GAARRAGRHVRG--IYVDIN-NISPETVRMASSLIEKG  105 (264)
T ss_dssp             TSSEEEECSCGGGHH--HHHHHHHTTCCS--EEEECS-CCCHHHHHHHHHHCSSS
T ss_pred             cCCEEEEECCCHHHH--HHHHHHHHhcCc--EEEEcc-CCCHHHHHHHHHHHhhC
Confidence            899999999987654  234677777766  665554 4432   3566666543

>1u8x_X Maltose-6'-phosphate glucosidase; structural genomics, PSI, protein structure initiative, MCSG glucosidase, NAD-dependent; HET: G6P NAD; 2.05A {Bacillus subtilis} SCOP: c.2.1.5 d.162.1.2

Probab=98.94  E-value=3.8e-09  Score=104.74  Aligned_cols=123  Identities=15%  Similarity=0.184  Sum_probs=85.6

Q ss_pred             cEEEEECCCcc-hHHHHHHHHHC-----CCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc
Q psy9056         221 KTVAVLGAGLM-GAGIAHVTVDK-----GYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY  294 (359)
Q Consensus       221 ~kI~IIG~G~m-G~~iA~~l~~~-----G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~  294 (359)
                      +||+|||+|.+ |.+++..++..     +.+|++||+++++++...+ +.+.+   .....        ...++..++|+
T Consensus        29 ~KIaVIGaGsv~~~ala~~L~~~~~~l~~~eV~L~Di~~e~~~~~~~-~~~~~---l~~~~--------~~~~I~~t~D~   96 (472)
T 1u8x_X           29 FSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAG-ACDVF---IREKA--------PDIEFAATTDP   96 (472)
T ss_dssp             EEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHH-HHHHH---HHHHC--------TTSEEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHHhCCCCCCCCEEEEEeCCHHHHHHHHH-HHHHH---hccCC--------CCCEEEEECCH
Confidence            49999999999 66688888887     6689999999998877532 22211   11111        11357777887


Q ss_pred             -CCCCCccEEEEcccCCH----------------------------------HHHHHHHHHHHHhCCCCcEEEEcCCCCc
Q psy9056         295 -DPFKNADMVIEAVFEDI----------------------------------NIKHQVIKEIEAVVPPHCVVATNTSAIP  339 (359)
Q Consensus       295 -~~l~~aD~Vi~avp~~~----------------------------------~~k~~v~~~l~~~~~~~~ii~s~ts~~~  339 (359)
                       +++++||+||+++|...                                  .+.+++.+.+.+++ |+++|+..|+...
T Consensus        97 ~eal~~AD~VViaag~~~~~g~~rd~~ip~k~g~~~~eT~G~ggl~~~~rni~i~~~i~~~i~~~~-P~A~ii~~TNPvd  175 (472)
T 1u8x_X           97 EEAFTDVDFVMAHIRVGKYAMRALDEQIPLKYGVVGQETCGPGGIAYGMRSIGGVLEILDYMEKYS-PDAWMLNYSNPAA  175 (472)
T ss_dssp             HHHHSSCSEEEECCCTTHHHHHHHHHHHHHTTTCCCCSSSHHHHHHHHHHHHHHHHHHHHHHHHHC-TTCEEEECCSCHH
T ss_pred             HHHHcCCCEEEEcCCCccccccchhhhhhhhcCcccccccCchhHHHHhhhHHHHHHHHHHHHHHC-CCeEEEEeCCcHH
Confidence             78999999999998632                                  24667778899997 5677766666655


Q ss_pred             H-HHHHhhcCCCCcEEee
Q psy9056         340 I-TKIAAASKRPDKVRNM  356 (359)
Q Consensus       340 ~-~~l~~~~~~~~rvig~  356 (359)
                      + +.......++.|+||+
T Consensus       176 i~T~~~~k~~p~~rViG~  193 (472)
T 1u8x_X          176 IVAEATRRLRPNSKILNI  193 (472)
T ss_dssp             HHHHHHHHHSTTCCEEEC
T ss_pred             HHHHHHHHhCCCCCEEEe
Confidence            4 3333333356799995

>2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis}

Probab=98.94  E-value=8.4e-10  Score=103.50  Aligned_cols=116  Identities=12%  Similarity=0.041  Sum_probs=81.2

Q ss_pred             cEEEEECCCcchHHHHHHHHHC-----C-CeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChH-HHHhhhcccccccC
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDK-----G-YNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSAL-DRDRYLASLVGTLS  293 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~-----G-~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~i~~~~~  293 (359)
                      +||+|||+|.||..+|..|+++     | ++|++||+ +++++...+.          .|..... ........+..+++
T Consensus         9 m~I~iiG~G~mG~~~a~~L~~~~~~~~g~~~V~~~~r-~~~~~~l~~~----------~g~~~~~~~~~~~~~~~~~~~~   77 (317)
T 2qyt_A            9 IKIAVFGLGGVGGYYGAMLALRAAATDGLLEVSWIAR-GAHLEAIRAA----------GGLRVVTPSRDFLARPTCVTDN   77 (317)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHTTSSEEEEEECC-HHHHHHHHHH----------TSEEEECSSCEEEECCSEEESC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCccccCCCCCEEEEEc-HHHHHHHHhc----------CCeEEEeCCCCeEEecceEecC
Confidence            4899999999999999999999     9 99999999 7665554320          0100000 00000011223344


Q ss_pred             cCCCCCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCcH-HHHHhhcCC
Q psy9056         294 YDPFKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPI-TKIAAASKR  349 (359)
Q Consensus       294 ~~~l~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~-~~l~~~~~~  349 (359)
                      .+.+.++|+||.|+|.+.  ..++++++.++++++++|++.++++.. +.+.+.++.
T Consensus        78 ~~~~~~~D~vil~vk~~~--~~~v~~~i~~~l~~~~~iv~~~nG~~~~~~l~~~l~~  132 (317)
T 2qyt_A           78 PAEVGTVDYILFCTKDYD--MERGVAEIRPMIGQNTKILPLLNGADIAERMRTYLPD  132 (317)
T ss_dssp             HHHHCCEEEEEECCSSSC--HHHHHHHHGGGEEEEEEEEECSCSSSHHHHHTTTSCT
T ss_pred             ccccCCCCEEEEecCccc--HHHHHHHHHhhcCCCCEEEEccCCCCcHHHHHHHCCC
Confidence            455688999999999877  578889999988888999998999887 456666643

>3bf0_A Protease 4; bacterial, hydrolase, inner membrane, membrane, transmembrane; 2.55A {Escherichia coli} PDB: 3bez_A

Probab=98.94  E-value=1.8e-10  Score=117.75  Aligned_cols=91  Identities=20%  Similarity=0.178  Sum_probs=76.4

Q ss_pred             CCCCchHHHHHHhcCEEEEecCCceEEecccc------------CCCCCCCc-------------chH------------
Q psy9056           1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEV------------MLGLLPGA-------------GGT------------   43 (359)
Q Consensus         1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~------------~~Gi~p~~-------------g~~------------   43 (359)
                      |+|.|||+.|+++||+|||+++  +.|+.+++            ++|+.|+.             +++            
T Consensus       380 g~AasgG~~iA~aaD~iva~p~--a~~Gsigv~~~~~~~~~~~~klGi~~~~~~~g~~k~~~~~~~~t~~~~~~l~~~l~  457 (593)
T 3bf0_A          380 GMAASGGYWISTPANYIVANPS--TLTGSIGIFGVITTVENSLDSIGVHTDGVSTSPLADVSITRALPPEAQLMMQLSIE  457 (593)
T ss_dssp             EEEETHHHHTTTTCSEEEECTT--CEEECCCEEEEEEECHHHHHHTTCEEECCBSCGGGCCCTTSCCCHHHHHHHHHHHH
T ss_pred             CChHHHHHHHHHhCCEEEECCC--CEeecceeEEecCchHHHHHhcCceeeeeecccccccCcCCCCCHHHHHHHHHHHH
Confidence            4689999999999999999988  99999985            68987643             222            


Q ss_pred             ---hHHhhhcChHH-----HHHHHhcCCCCCHHHHHHcCCcceecCCCCCCCCCcchhhHHHHHHHHHHHH
Q psy9056          44 ---QRLPKLTALPN-----VLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTA  106 (359)
Q Consensus        44 ---~~l~~~~g~~~-----a~~~~ltg~~~~a~eA~~~Glv~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  106 (359)
                         ..+.+.++..+     +.+++++|+.++++||+++||||++++.             +++.+.+.+++
T Consensus       458 ~~~~~f~~~V~~~Rg~~~~a~~~l~~G~~~ta~eA~~~GLVD~v~~~-------------~~~~~~a~~~a  515 (593)
T 3bf0_A          458 NGYKRFITLVADARHSTPEQIDKIAQGHVWTGQDAKANGLVDSLGDF-------------DDAVAKAAELA  515 (593)
T ss_dssp             HHHHHHHHHHHHHTTCCHHHHHTTCTTCEEEHHHHHHHTSCSEECCH-------------HHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHhcCCCcCHHHHHHCCCCcCccCH-------------HHHHHHHHHHc
Confidence               45677788777     8899999999999999999999999987             77777666644

>2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A*

Probab=98.94  E-value=2.1e-09  Score=107.29  Aligned_cols=107  Identities=12%  Similarity=0.151  Sum_probs=80.0

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcC-CC--
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYD-PF--  297 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~l--  297 (359)
                      ++|+|||+|.||..+|..|+++|++|.+||+++++++...+.   .    . .+           .++..+++.+ .+  
T Consensus         3 m~IgvIG~G~mG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~---~----~-~g-----------~gi~~~~~~~e~v~~   63 (482)
T 2pgd_A            3 ADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLAN---E----A-KG-----------TKVLGAHSLEEMVSK   63 (482)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHHT---T----T-TT-----------SSCEECSSHHHHHHH
T ss_pred             CeEEEEChHHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHhc---c----c-cC-----------CCeEEeCCHHHHHhh
Confidence            479999999999999999999999999999999887765321   0    0 00           1244455553 23  


Q ss_pred             -CCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCcHH--HHHhhc
Q psy9056         298 -KNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPIT--KIAAAS  347 (359)
Q Consensus       298 -~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~--~l~~~~  347 (359)
                       +++|+||+|+|.... .+.+++++.++++++++|++.+++.+..  .+.+.+
T Consensus        64 l~~aDvVilaVp~~~~-v~~vl~~l~~~l~~g~iII~~s~~~~~~~~~l~~~l  115 (482)
T 2pgd_A           64 LKKPRRIILLVKAGQA-VDNFIEKLVPLLDIGDIIIDGGNSEYRDTMRRCRDL  115 (482)
T ss_dssp             BCSSCEEEECSCTTHH-HHHHHHHHHHHCCTTCEEEECSCCCHHHHHHHHHHH
T ss_pred             ccCCCEEEEeCCChHH-HHHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHH
Confidence             589999999998754 4567788999999999999888877643  444444

>1obb_A Maltase, alpha-glucosidase; glycosidase, sulfinic acid, NAD+, maltose, hydrolase; HET: MAL NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2

Probab=98.93  E-value=3.7e-09  Score=104.88  Aligned_cols=124  Identities=19%  Similarity=0.218  Sum_probs=86.8

Q ss_pred             CccEEEEECCCcc--hHHHHHHHHHC----CCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhccccccc
Q psy9056         219 PVKTVAVLGAGLM--GAGIAHVTVDK----GYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTL  292 (359)
Q Consensus       219 ~~~kI~IIG~G~m--G~~iA~~l~~~----G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~  292 (359)
                      +.+||+|||+|.|  |.+++..++..    |++|++||+++++++........    ......        ...+++.++
T Consensus         2 ~~~KIaVIGAGsVg~g~ala~~La~~~~l~~~eV~L~Di~~e~l~~~~~~~~~----~l~~~~--------~~~~I~~tt   69 (480)
T 1obb_A            2 PSVKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKK----YVEEVG--------ADLKFEKTM   69 (480)
T ss_dssp             CCCEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHHHHH----HHHHTT--------CCCEEEEES
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHhcCcCCCCEEEEEeCCHHHHHHHHHHHHH----HhccCC--------CCcEEEEEC
Confidence            3469999999996  56667788754    88999999999988875443322    221111        123677788


Q ss_pred             Cc-CCCCCccEEEEcccC-----------------------C-----------------HHHHHHHHHHHHHhCCCCcEE
Q psy9056         293 SY-DPFKNADMVIEAVFE-----------------------D-----------------INIKHQVIKEIEAVVPPHCVV  331 (359)
Q Consensus       293 ~~-~~l~~aD~Vi~avp~-----------------------~-----------------~~~k~~v~~~l~~~~~~~~ii  331 (359)
                      |+ +++++||+||+++|.                       +                 ..+.+++.+.+.+++ |++++
T Consensus        70 D~~eal~dAD~VIiaagv~~~~~~~~dE~ip~K~g~~~~l~dt~g~g~~~~G~~~~~rni~i~~~i~~~i~~~~-P~A~i  148 (480)
T 1obb_A           70 NLDDVIIDADFVINTAMVGGHTYLEKVRQIGEKYGYYRGIDAQEFNMVSDYYTFSNYNQLKYFVDIARKIEKLS-PKAWY  148 (480)
T ss_dssp             CHHHHHTTCSEEEECCCTTHHHHHHHHHHHHHHTTCTTCTTCBTTBCCTTCCSSSCHHHHHHHHHHHHHHHHHC-TTCEE
T ss_pred             CHHHHhCCCCEEEECCCcccccccccccccccccccccchhhhcCCccchhhhHHhhhhHHHHHHHHHHHHHHC-CCeEE
Confidence            87 789999999999963                       1                 146678888999997 56777


Q ss_pred             EEcCCCCcH-HHHHhhcCCCCcEEee
Q psy9056         332 ATNTSAIPI-TKIAAASKRPDKVRNM  356 (359)
Q Consensus       332 ~s~ts~~~~-~~l~~~~~~~~rvig~  356 (359)
                      +..|+...+ +.+...+ .+.|++|+
T Consensus       149 i~~TNPvdi~t~~~~k~-p~~rviG~  173 (480)
T 1obb_A          149 LQAANPIFEGTTLVTRT-VPIKAVGF  173 (480)
T ss_dssp             EECSSCHHHHHHHHHHH-SCSEEEEE
T ss_pred             EEeCCcHHHHHHHHHHC-CCCcEEec
Confidence            777766554 3444444 46799985

>2i76_A Hypothetical protein; NADP, dehydrogenase, TM1727, structural genomics, PSI-2, protein structure initiative; HET: NDP; 3.00A {Thermotoga maritima} SCOP: a.100.1.10 c.2.1.6

Probab=98.93  E-value=4e-10  Score=104.31  Aligned_cols=95  Identities=8%  Similarity=0.024  Sum_probs=65.2

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCCee-EEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CCCC
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGYNT-IVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DPFK  298 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~~V-~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~l~  298 (359)
                      .+|+|||+|+||.+++..+.++ ++| .+||+++++++...+.+                      + . .+++. +.++
T Consensus         3 m~I~iIG~G~mG~~la~~l~~~-~~v~~v~~~~~~~~~~~~~~~----------------------g-~-~~~~~~~~~~   57 (276)
T 2i76_A            3 LVLNFVGTGTLTRFFLECLKDR-YEIGYILSRSIDRARNLAEVY----------------------G-G-KAATLEKHPE   57 (276)
T ss_dssp             -CCEEESCCHHHHHHHHTTC-----CCCEECSSHHHHHHHHHHT----------------------C-C-CCCSSCCCCC
T ss_pred             ceEEEEeCCHHHHHHHHHHHHc-CcEEEEEeCCHHHHHHHHHHc----------------------C-C-ccCCHHHHHh
Confidence            4899999999999999999988 999 59999998766543210                      1 1 33455 4578


Q ss_pred             CccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCcHHHHHh
Q psy9056         299 NADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPITKIAA  345 (359)
Q Consensus       299 ~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~l~~  345 (359)
                      ++|+||+|+|++.  ...++.++.   .++++|++.+++++.+.+..
T Consensus        58 ~~DvVilav~~~~--~~~v~~~l~---~~~~ivi~~s~~~~~~~l~~   99 (276)
T 2i76_A           58 LNGVVFVIVPDRY--IKTVANHLN---LGDAVLVHCSGFLSSEIFKK   99 (276)
T ss_dssp             ---CEEECSCTTT--HHHHHTTTC---CSSCCEEECCSSSCGGGGCS
T ss_pred             cCCEEEEeCChHH--HHHHHHHhc---cCCCEEEECCCCCcHHHHHH
Confidence            8999999999887  567777664   57788888777777766543

>3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis}

Probab=98.92  E-value=6.2e-09  Score=97.82  Aligned_cols=116  Identities=11%  Similarity=0.047  Sum_probs=78.6

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcCCCCCc
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPFKNA  300 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~a  300 (359)
                      +||+|||+|.||+.++..|+ +|++|++|++++++++...+. .-.+.   ..+.       .....+.  .+.+.+..+
T Consensus         3 mkI~IiGaGa~G~~~a~~L~-~g~~V~~~~r~~~~~~~l~~~-G~~~~---~~~~-------~~~~~~~--~~~~~~~~~   68 (307)
T 3ego_A            3 LKIGIIGGGSVGLLCAYYLS-LYHDVTVVTRRQEQAAAIQSE-GIRLY---KGGE-------EFRADCS--ADTSINSDF   68 (307)
T ss_dssp             CEEEEECCSHHHHHHHHHHH-TTSEEEEECSCHHHHHHHHHH-CEEEE---ETTE-------EEEECCE--EESSCCSCC
T ss_pred             CEEEEECCCHHHHHHHHHHh-cCCceEEEECCHHHHHHHHhC-CceEe---cCCC-------eeccccc--ccccccCCC
Confidence            48999999999999999999 999999999999876655431 00000   0000       0001111  112456789


Q ss_pred             cEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCcHH-HHHhhcCCCCcEEe
Q psy9056         301 DMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPIT-KIAAASKRPDKVRN  355 (359)
Q Consensus       301 D~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~-~l~~~~~~~~rvig  355 (359)
                      |+||+|++...  ..++++.+.+. .+++ |++..+|+... .+.+.++ ..++++
T Consensus        69 D~vilavK~~~--~~~~l~~l~~~-~~~~-ivs~~nGi~~~e~l~~~~~-~~~vl~  119 (307)
T 3ego_A           69 DLLVVTVKQHQ--LQSVFSSLERI-GKTN-ILFLQNGMGHIHDLKDWHV-GHSIYV  119 (307)
T ss_dssp             SEEEECCCGGG--HHHHHHHTTSS-CCCE-EEECCSSSHHHHHHHTCCC-SCEEEE
T ss_pred             CEEEEEeCHHH--HHHHHHHhhcC-CCCe-EEEecCCccHHHHHHHhCC-CCcEEE
Confidence            99999998665  66888888765 6777 88999999986 4444444 345544

>1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium}

Probab=98.92  E-value=4.2e-10  Score=104.64  Aligned_cols=103  Identities=16%  Similarity=0.135  Sum_probs=75.0

Q ss_pred             ccEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CCCC
Q psy9056         220 VKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DPFK  298 (359)
Q Consensus       220 ~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~l~  298 (359)
                      |++|+|||+|.||..++..|.+.|++|++|| ++++++...+           .+             +...++. +.++
T Consensus         3 ~m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~-~~~~~~~~~~-----------~g-------------~~~~~~~~~~~~   57 (295)
T 1yb4_A            3 AMKLGFIGLGIMGSPMAINLARAGHQLHVTT-IGPVADELLS-----------LG-------------AVNVETARQVTE   57 (295)
T ss_dssp             -CEEEECCCSTTHHHHHHHHHHTTCEEEECC-SSCCCHHHHT-----------TT-------------CBCCSSHHHHHH
T ss_pred             CCEEEEEccCHHHHHHHHHHHhCCCEEEEEc-CHHHHHHHHH-----------cC-------------CcccCCHHHHHh
Confidence            4689999999999999999999999999999 8876554321           11             2233444 4467


Q ss_pred             CccEEEEcccCCHHHHHHHHH---HHHHhCCCCcEEEEcCCCCc--HHHHHhhcC
Q psy9056         299 NADMVIEAVFEDINIKHQVIK---EIEAVVPPHCVVATNTSAIP--ITKIAAASK  348 (359)
Q Consensus       299 ~aD~Vi~avp~~~~~k~~v~~---~l~~~~~~~~ii~s~ts~~~--~~~l~~~~~  348 (359)
                      ++|+||+|+|.+..+ +.++.   ++.+.++++++|++.+++.+  ...+.+.+.
T Consensus        58 ~~D~vi~~vp~~~~~-~~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~l~~~~~  111 (295)
T 1yb4_A           58 FADIIFIMVPDTPQV-EDVLFGEHGCAKTSLQGKTIVDMSSISPIETKRFAQRVN  111 (295)
T ss_dssp             TCSEEEECCSSHHHH-HHHHHSTTSSTTSCCTTEEEEECSCCCHHHHHHHHHHHH
T ss_pred             cCCEEEEECCCHHHH-HHHHhCchhHhhcCCCCCEEEECCCCCHHHHHHHHHHHH
Confidence            899999999977654 34554   67777888999988877743  345555544

>1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6

Probab=98.91  E-value=2.7e-09  Score=106.31  Aligned_cols=110  Identities=15%  Similarity=0.144  Sum_probs=80.5

Q ss_pred             EEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcC-CCC--
Q psy9056         222 TVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYD-PFK--  298 (359)
Q Consensus       222 kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~l~--  298 (359)
                      +|+|||+|.||..+|..++++|++|.+||+++++++...+...          .. +.     ..++..+++.+ .++  
T Consensus         3 kIgVIG~G~mG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~g----------~~-~~-----~~~i~~~~~~~e~v~~l   66 (478)
T 1pgj_A            3 DVGVVGLGVMGANLALNIAEKGFKVAVFNRTYSKSEEFMKANA----------SA-PF-----AGNLKAFETMEAFAASL   66 (478)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTT----------TS-TT-----GGGEEECSCHHHHHHHB
T ss_pred             EEEEEChHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcC----------CC-CC-----CCCeEEECCHHHHHhcc
Confidence            7999999999999999999999999999999998776543211          00 00     01244455553 333  


Q ss_pred             -CccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCcH--HHHHhhcC
Q psy9056         299 -NADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPI--TKIAAASK  348 (359)
Q Consensus       299 -~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~--~~l~~~~~  348 (359)
                       ++|+||+|+|.... .+.+++++.++++++++|++.+++.+.  ..+.+.+.
T Consensus        67 ~~aDvVilaVp~~~~-v~~vl~~l~~~l~~g~iIId~sng~~~~~~~l~~~l~  118 (478)
T 1pgj_A           67 KKPRKALILVQAGAA-TDSTIEQLKKVFEKGDILVDTGNAHFKDQGRRAQQLE  118 (478)
T ss_dssp             CSSCEEEECCCCSHH-HHHHHHHHHHHCCTTCEEEECCCCCHHHHHHHHHHHH
T ss_pred             cCCCEEEEecCChHH-HHHHHHHHHhhCCCCCEEEECCCCChHHHHHHHHHHH
Confidence             59999999998654 456778899999999999888877754  34555443

>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*

Probab=98.90  E-value=4.8e-10  Score=103.70  Aligned_cols=108  Identities=11%  Similarity=0.109  Sum_probs=76.8

Q ss_pred             EEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcCCCCCcc
Q psy9056         222 TVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPFKNAD  301 (359)
Q Consensus       222 kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~aD  301 (359)
                      ||+|||+|.||..+|..|+++|++|++||+++++++..           ...+. ..   ......+. .++.+.++++|
T Consensus         2 ~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~~~~~~l-----------~~~~~-~~---~~~~~~~~-~~~~~~~~~~d   65 (291)
T 1ks9_A            2 KITVLGCGALGQLWLTALCKQGHEVQGWLRVPQPYCSV-----------NLVET-DG---SIFNESLT-ANDPDFLATSD   65 (291)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSEEEE-----------EEECT-TS---CEEEEEEE-ESCHHHHHTCS
T ss_pred             eEEEECcCHHHHHHHHHHHhCCCCEEEEEcCccceeeE-----------EEEcC-CC---ceeeeeee-ecCccccCCCC
Confidence            79999999999999999999999999999998653321           00000 00   00000111 22334567899


Q ss_pred             EEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCcHH-HHHhhc
Q psy9056         302 MVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPIT-KIAAAS  347 (359)
Q Consensus       302 ~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~-~l~~~~  347 (359)
                      +||+|+|.+.  .+++++++.++++++++|++.++++... .+.+.+
T Consensus        66 ~vi~~v~~~~--~~~v~~~l~~~l~~~~~vv~~~~g~~~~~~l~~~~  110 (291)
T 1ks9_A           66 LLLVTLKAWQ--VSDAVKSLASTLPVTTPILLIHNGMGTIEELQNIQ  110 (291)
T ss_dssp             EEEECSCGGG--HHHHHHHHHTTSCTTSCEEEECSSSCTTGGGTTCC
T ss_pred             EEEEEecHHh--HHHHHHHHHhhCCCCCEEEEecCCCCcHHHHHHhc
Confidence            9999999876  5789999999999999888888888664 444444

>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ...

Probab=98.90  E-value=4.5e-09  Score=99.65  Aligned_cols=126  Identities=19%  Similarity=0.237  Sum_probs=88.9

Q ss_pred             CCCccEEEEECCCcchHHHHHHHHHCCC--eeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc
Q psy9056         217 QTPVKTVAVLGAGLMGAGIAHVTVDKGY--NTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY  294 (359)
Q Consensus       217 ~~~~~kI~IIG~G~mG~~iA~~l~~~G~--~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~  294 (359)
                      ..+.+||+|||+|.||.++|..++.+|+  +|+++|+++++++.....+++.....             ....+..++++
T Consensus        16 ~~~~~kV~ViGaG~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~a~DL~~~~~~~-------------~~~~i~~~~d~   82 (331)
T 4aj2_A           16 QVPQNKITVVGVGAVGMACAISILMKDLADELALVDVIEDKLKGEMMDLQHGSLFL-------------KTPKIVSSKDY   82 (331)
T ss_dssp             -CCSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGC-------------SCCEEEECSSG
T ss_pred             cCCCCEEEEECCCHHHHHHHHHHHhCCCCceEEEEeCChHHHHHHHHhhhhhhhcc-------------CCCeEEEcCCH
Confidence            3566899999999999999999999998  89999999988777655555432100             01234556788


Q ss_pred             CCCCCccEEEEccc--------------CCHHHHHHHHHHHHHhCCCCcEEEEcCCCCc--HHHHHhhcCC-CCcEEee
Q psy9056         295 DPFKNADMVIEAVF--------------EDINIKHQVIKEIEAVVPPHCVVATNTSAIP--ITKIAAASKR-PDKVRNM  356 (359)
Q Consensus       295 ~~l~~aD~Vi~avp--------------~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~--~~~l~~~~~~-~~rvig~  356 (359)
                      +++++||+||++.-              .+..+.+++.+.+.+++ |+.+++..|+...  ...+....+. +.|++|+
T Consensus        83 ~~~~~aDiVvi~aG~~~kpG~tR~dL~~~N~~I~~~i~~~i~~~~-p~a~vlvvtNPvdi~t~~~~k~sg~p~~rviG~  160 (331)
T 4aj2_A           83 SVTANSKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYS-PQCKLLIVSNPVDILTYVAWKISGFPKNRVIGS  160 (331)
T ss_dssp             GGGTTEEEEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHC-TTCEEEECSSSHHHHHHHHHHHHCCCGGGEEEC
T ss_pred             HHhCCCCEEEEccCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecChHHHHHHHHHHHhCCCHHHEEee
Confidence            88999999998762              13456777888899995 5666655555433  3344444454 4688886

>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber}

Probab=98.89  E-value=5.5e-09  Score=98.44  Aligned_cols=124  Identities=18%  Similarity=0.180  Sum_probs=83.8

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCC--eeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcCCCC
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGY--NTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPFK  298 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~--~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~  298 (359)
                      +||+|||+|.||.++|..++.+|+  +|+++|+++++++.....+++.....  ..          ..++..++++++++
T Consensus         1 Mkv~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~~--~~----------~~~v~~~~~~~a~~   68 (314)
T 3nep_X            1 MKVTVIGAGNVGATVAECVARQDVAKEVVMVDIKDGMPQGKALDMRESSPIH--GF----------DTRVTGTNDYGPTE   68 (314)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSSEEEEECSSTTHHHHHHHHHHHHHHHH--TC----------CCEEEEESSSGGGT
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCchHHHHHHHHHHhcccccc--CC----------CcEEEECCCHHHhC
Confidence            489999999999999999999998  99999999988665444444321100  00          01233356778999


Q ss_pred             CccEEEEcccCC--------------HHHHHHHHHHHHHhCCCCcEEEEcCCCCcH--HHHHhhcCC-CCcEEeec
Q psy9056         299 NADMVIEAVFED--------------INIKHQVIKEIEAVVPPHCVVATNTSAIPI--TKIAAASKR-PDKVRNMG  357 (359)
Q Consensus       299 ~aD~Vi~avp~~--------------~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~--~~l~~~~~~-~~rvig~h  357 (359)
                      +||+||++...+              ..+.+++.+.+.+++ |+.+++..|+...+  ..+.+..+. +.|++|+.
T Consensus        69 ~aDvVii~ag~~~kpG~~R~dl~~~N~~i~~~i~~~i~~~~-p~a~vivvtNPvd~~t~~~~k~~g~p~~rviG~~  143 (314)
T 3nep_X           69 DSDVCIITAGLPRSPGMSRDDLLAKNTEIVGGVTEQFVEGS-PDSTIIVVANPLDVMTYVAYEASGFPTNRVMGMA  143 (314)
T ss_dssp             TCSEEEECCCC-------CHHHHHHHHHHHHHHHHHHHTTC-TTCEEEECCSSHHHHHHHHHHHHTCCGGGEEECC
T ss_pred             CCCEEEECCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHHhC-CCcEEEecCCchhHHHHHHHHhcCCChHHEEeec
Confidence            999999987432              335566777888886 56666655554333  334444443 57899863

>1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A*

Probab=98.89  E-value=1.3e-09  Score=106.32  Aligned_cols=115  Identities=21%  Similarity=0.250  Sum_probs=79.8

Q ss_pred             EEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHH----hHHHHHhhccCChHHHHhhhcccccccCc-CC
Q psy9056         222 TVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKT----GLDGAVKRKKMSALDRDRYLASLVGTLSY-DP  296 (359)
Q Consensus       222 kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~----~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~  296 (359)
                      ||+|||+|+||.++|..|++ |++|++||+++++++...+....    .++.....          ...++.++++. +.
T Consensus         2 kI~VIG~G~vG~~~A~~La~-G~~V~~~d~~~~~~~~l~~~~~~i~e~~l~~~~~~----------~~~~l~~t~~~~~~   70 (402)
T 1dlj_A            2 KIAVAGSGYVGLSLGVLLSL-QNEVTIVDILPSKVDKINNGLSPIQDEYIEYYLKS----------KQLSIKATLDSKAA   70 (402)
T ss_dssp             EEEEECCSHHHHHHHHHHTT-TSEEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHH----------SCCCEEEESCHHHH
T ss_pred             EEEEECCCHHHHHHHHHHhC-CCEEEEEECCHHHHHHHHcCCCCcCCCCHHHHHHh----------ccCcEEEeCCHHHH
Confidence            89999999999999999999 99999999999987765431100    00000000          01245666665 56


Q ss_pred             CCCccEEEEcccCCH---------HHHHHHHHHHHHhCCCCcEEEE-cCCCCcH-HHHHhhcC
Q psy9056         297 FKNADMVIEAVFEDI---------NIKHQVIKEIEAVVPPHCVVAT-NTSAIPI-TKIAAASK  348 (359)
Q Consensus       297 l~~aD~Vi~avp~~~---------~~k~~v~~~l~~~~~~~~ii~s-~ts~~~~-~~l~~~~~  348 (359)
                      ++++|+||+|+|.+.         .....+++.+.+ ++++++|+. +|.+... +.+.+.++
T Consensus        71 ~~~aDvviiavpt~~~~~~~~~dl~~v~~v~~~i~~-l~~~~iVV~~ST~~~g~~~~l~~~~~  132 (402)
T 1dlj_A           71 YKEAELVIIATPTNYNSRINYFDTQHVETVIKEVLS-VNSHATLIIKSTIPIGFITEMRQKFQ  132 (402)
T ss_dssp             HHHCSEEEECCCCCEETTTTEECCHHHHHHHHHHHH-HCSSCEEEECSCCCTTHHHHHHHHTT
T ss_pred             hcCCCEEEEecCCCcccCCCCccHHHHHHHHHHHHh-hCCCCEEEEeCCCCccHHHHHHHHhC
Confidence            789999999999873         146788888888 788888875 4444433 45555543

>3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B*

Probab=98.87  E-value=2.6e-09  Score=104.01  Aligned_cols=112  Identities=14%  Similarity=0.054  Sum_probs=75.8

Q ss_pred             cEEEEECCCcchHHHHHHHHH-CCCeeEEec---CCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccc-cccCc-
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVD-KGYNTIVKD---SFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLV-GTLSY-  294 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~-~G~~V~l~d---~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~-~~~~~-  294 (359)
                      +||+|||+|.||..+|..|++ +|++|++||   +++++++.+.+...-.+. ..    ...........++. ++++. 
T Consensus         3 mkI~ViGaG~~G~~~a~~La~~~G~~V~~~~~~~r~~~~~~~~~~~~g~~~~-~~----~~~~~~~~~~~~~~~~~~~~~   77 (404)
T 3c7a_A            3 VKVCVCGGGNGAHTLSGLAASRDGVEVRVLTLFADEAERWTKALGADELTVI-VN----EKDGTQTEVKSRPKVITKDPE   77 (404)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTSTTEEEEEECCSTTHHHHHHHHHTTSCEEEE-EE----CSSSCEEEEEECCSEEESCHH
T ss_pred             ceEEEECCCHHHHHHHHHHHhCCCCEEEEEeCCCCcHHHHHHHHhhccceee-ee----cCCCccceeeccceEEeCCHH
Confidence            589999999999999999988 599999999   777766543210000000 00    00000000112343 55566 


Q ss_pred             CCCCCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCc
Q psy9056         295 DPFKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIP  339 (359)
Q Consensus       295 ~~l~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~  339 (359)
                      +.+.++|+||+|+|...  .+.++++|.++++++++|++++++..
T Consensus        78 ~a~~~aD~Vilav~~~~--~~~v~~~l~~~l~~~~ivv~~~~~~G  120 (404)
T 3c7a_A           78 IAISGADVVILTVPAFA--HEGYFQAMAPYVQDSALIVGLPSQAG  120 (404)
T ss_dssp             HHHTTCSEEEECSCGGG--HHHHHHHHTTTCCTTCEEEETTCCTT
T ss_pred             HHhCCCCEEEEeCchHH--HHHHHHHHHhhCCCCcEEEEcCCCcc
Confidence            45789999999999887  67999999999999999998554443

>3rst_A Signal peptide peptidase SPPA; alpha/beta protein fold, signal peptide digestion, bacterial membrane, hydrolase; 2.37A {Bacillus subtilis}

Probab=98.86  E-value=2.2e-09  Score=97.49  Aligned_cols=91  Identities=14%  Similarity=0.050  Sum_probs=71.0

Q ss_pred             CCCCchHHHHHHhcCEEEEecCCceEEecc---------------------ccCCCCCCCcchH----------------
Q psy9056           1 MFAEPSLATVALACHYRIVVKDKKTGLGLP---------------------EVMLGLLPGAGGT----------------   43 (359)
Q Consensus         1 ~~a~GgG~~lalacD~ria~~~~~~~~~~p---------------------e~~~Gi~p~~g~~----------------   43 (359)
                      |+|.|||+.|+++||+|||+++  +.|+.+                     +++.|-.++.+..                
T Consensus        88 g~a~~gG~~lA~a~D~i~a~~~--a~~g~~Gv~~~~~~~~~~l~k~Gi~~~~~~~G~~k~~~~p~~~~s~~~~~~~~~~l  165 (240)
T 3rst_A           88 SMAASGGYYISTAADKIFATPE--TLTGSLGVIMESVNYSKLADKLGISFETIKSGAHADIMSPSREMTKEEKNIMQSMV  165 (240)
T ss_dssp             EEEETHHHHHHTTSSEEEECTT--CEEECCCCEEEEEECHHHHHHHTCEEEEEESSTTTTTTCTTSCCCHHHHHHHHHHH
T ss_pred             CeehHhHHHHHHhCCeeEECCC--CeEeccceeeEecCHHHHHHHcCCeEEEEeccccccccCCCCCCCHHHHHHHHHHH
Confidence            4688999999999999999988  999999                     6677777766522                


Q ss_pred             ----------hHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceecCCCCCCCCCcchhhHHHHHHHHHHHHH
Q psy9056          44 ----------QRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTAS  107 (359)
Q Consensus        44 ----------~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  107 (359)
                                ..-.|.+....... +++|+.+++++|+++||||++.+.             +++.+.+.+++.
T Consensus       166 ~~~~~~f~~~Va~~R~l~~~~~~~-~~~g~~~~a~~A~~~GLVD~i~~~-------------~~~~~~~~~~~~  225 (240)
T 3rst_A          166 DNSYEGFVDVISKGRGMPKAEVKK-IADGRVYDGRQAKKLNLVDELGFY-------------DDTITAMKKDHK  225 (240)
T ss_dssp             HHHHHHHHHHHHHHHTCCHHHHHH-HCSSCEEEHHHHHHTTSSSEECCH-------------HHHHHHHHHHCG
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHH-HhcCCcccHHHHHHcCCCcccCCH-------------HHHHHHHHHHhC
Confidence                      22334455444444 789999999999999999999987             777776666554

>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*

Probab=98.86  E-value=9.3e-09  Score=97.36  Aligned_cols=123  Identities=20%  Similarity=0.243  Sum_probs=85.5

Q ss_pred             CccEEEEECCCcchHHHHHHHHHCCC--eeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccc-cccCcC
Q psy9056         219 PVKTVAVLGAGLMGAGIAHVTVDKGY--NTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLV-GTLSYD  295 (359)
Q Consensus       219 ~~~kI~IIG~G~mG~~iA~~l~~~G~--~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~-~~~~~~  295 (359)
                      +.+||+|||+|.||.++|..++..|+  +|+++|+++++++.....+++.... ..             ..+. .+++++
T Consensus         4 ~~~kI~ViGaG~vG~~~a~~l~~~~~~~~l~l~D~~~~k~~g~a~DL~~~~~~-~~-------------~~v~i~~~~~~   69 (326)
T 3pqe_A            4 HVNKVALIGAGFVGSSYAFALINQGITDELVVIDVNKEKAMGDVMDLNHGKAF-AP-------------QPVKTSYGTYE   69 (326)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHTGGG-SS-------------SCCEEEEECGG
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCceEEEEecchHHHHHHHHHHHhcccc-cc-------------CCeEEEeCcHH
Confidence            45799999999999999999999998  9999999998877655555543211 00             0122 245678


Q ss_pred             CCCCccEEEEcccC--------------CHHHHHHHHHHHHHhCCCCcEEEEcCCCCcH--HHHHhhcCC-CCcEEee
Q psy9056         296 PFKNADMVIEAVFE--------------DINIKHQVIKEIEAVVPPHCVVATNTSAIPI--TKIAAASKR-PDKVRNM  356 (359)
Q Consensus       296 ~l~~aD~Vi~avp~--------------~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~--~~l~~~~~~-~~rvig~  356 (359)
                      ++++||+||+++..              +..+.+++.+.+.++++ +.+|+..|+...+  ..+....+. +.|++|+
T Consensus        70 a~~~aDvVvi~ag~p~kpG~~R~dL~~~N~~Iv~~i~~~I~~~~p-~a~vlvvtNPvd~~t~~~~k~~g~p~~rviG~  146 (326)
T 3pqe_A           70 DCKDADIVCICAGANQKPGETRLELVEKNLKIFKGIVSEVMASGF-DGIFLVATNPVDILTYATWKFSGLPKERVIGS  146 (326)
T ss_dssp             GGTTCSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHTTC-CSEEEECSSSHHHHHHHHHHHHCCCGGGEEEC
T ss_pred             HhCCCCEEEEecccCCCCCccHHHHHHHHHHHHHHHHHHHHHhcC-CeEEEEcCChHHHHHHHHHHhcCCCHHHEEee
Confidence            89999999998732              22456677788888865 6666666654433  334444443 5789885

>2x0j_A Malate dehydrogenase; oxidoreductase, hyperthermophilic, tricarboxylic acid cycle; HET: ENA; 2.79A {Archaeoglobus fulgidus dsm 4304} PDB: 2x0i_A*

Probab=98.86  E-value=8.4e-09  Score=96.19  Aligned_cols=123  Identities=16%  Similarity=0.218  Sum_probs=86.6

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCC--eeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcCCCC
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGY--NTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPFK  298 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~--~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~  298 (359)
                      +||+|||+|.+|.++|..+..++.  ++.|+|++++..+.-..++.+.....   .         ....+..++++++++
T Consensus         1 MKV~IiGaG~VG~~~a~~l~~~~~~~el~L~Di~~~~~~G~a~DL~h~~~~~---~---------~~~~i~~~~d~~~~~   68 (294)
T 2x0j_A            1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGI---D---------KYPKIVGGADYSLLK   68 (294)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHGGG---T---------CCCEEEEESCGGGGT
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCCCCcchhhhhhhhcccccC---C---------CCCeEecCCCHHHhC
Confidence            489999999999999999999886  89999999887665444444422100   0         012345567889999


Q ss_pred             CccEEEEcc--c------------CCHHHHHHHHHHHHHhCCCCcEEEEcCCCCcH--HHHHhhcCC-CCcEEee
Q psy9056         299 NADMVIEAV--F------------EDINIKHQVIKEIEAVVPPHCVVATNTSAIPI--TKIAAASKR-PDKVRNM  356 (359)
Q Consensus       299 ~aD~Vi~av--p------------~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~--~~l~~~~~~-~~rvig~  356 (359)
                      +||+||++.  |            .|..+.+++.+.+.++++ +.+++..|+.+.+  ..+.+..+. +.|++|+
T Consensus        69 ~aDvVvitAG~prkpGmtR~dLl~~Na~I~~~i~~~i~~~~p-~aivlvvsNPvd~~t~i~~k~sg~p~~rvig~  142 (294)
T 2x0j_A           69 GSEIIVVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVENAP-ESKILVVTNPMDVMTYIMWKESGKPRNEVFGM  142 (294)
T ss_dssp             TCSEEEECCCCCCCSSSCHHHHHHHHHHHHHHHHHHHHTTST-TCEEEECSSSHHHHHHHHHHHSSCCTTSEEEC
T ss_pred             CCCEEEEecCCCCCCCCchHHHHHHHHHHHHHHHHHHHhcCC-ceEEEEecCcchhhHHhhHHHcCCChhhEEEe
Confidence            999999876  2            155677788889999875 5666566665443  345555554 4688875

>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A*

Probab=98.80  E-value=2.1e-08  Score=94.63  Aligned_cols=125  Identities=15%  Similarity=0.156  Sum_probs=82.3

Q ss_pred             CCccEEEEECCCcchHHHHHHHHHCCC--eeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcC
Q psy9056         218 TPVKTVAVLGAGLMGAGIAHVTVDKGY--NTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYD  295 (359)
Q Consensus       218 ~~~~kI~IIG~G~mG~~iA~~l~~~G~--~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~  295 (359)
                      |...||+|||+|++|.+++..++..|+  +|.++|+++++++.....+.+.. ...  +. .        -+++. ++++
T Consensus         4 m~~~KI~IIGaG~vG~~la~~l~~~~~~~ei~L~Di~~~~~~g~~~dl~~~~-~~~--~~-~--------~~v~~-~~~~   70 (317)
T 3d0o_A            4 FKGNKVVLIGNGAVGSSYAFSLVNQSIVDELVIIDLDTEKVRGDVMDLKHAT-PYS--PT-T--------VRVKA-GEYS   70 (317)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHHCSCSEEEEECSCHHHHHHHHHHHHHHG-GGS--SS-C--------CEEEE-CCGG
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHhhhhhhhHHhhh-hhc--CC-C--------eEEEe-CCHH
Confidence            344699999999999999999999985  89999999987765444343321 110  00 0        02222 4567


Q ss_pred             CCCCccEEEEcccCC--H------------HHHHHHHHHHHHhCCCCcEEEEcCCCCcH--HHHHhhcCC-CCcEEee
Q psy9056         296 PFKNADMVIEAVFED--I------------NIKHQVIKEIEAVVPPHCVVATNTSAIPI--TKIAAASKR-PDKVRNM  356 (359)
Q Consensus       296 ~l~~aD~Vi~avp~~--~------------~~k~~v~~~l~~~~~~~~ii~s~ts~~~~--~~l~~~~~~-~~rvig~  356 (359)
                      ++++||+||++++..  +            .+.+++.+.+.+++ ++.+|+..|+...+  ..+....+. +.|++|+
T Consensus        71 a~~~aDvVvi~ag~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~viv~tNPv~~~t~~~~k~~~~p~~rviG~  147 (317)
T 3d0o_A           71 DCHDADLVVICAGAAQKPGETRLDLVSKNLKIFKSIVGEVMASK-FDGIFLVATNPVDILAYATWKFSGLPKERVIGS  147 (317)
T ss_dssp             GGTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHTT-CCSEEEECSSSHHHHHHHHHHHHCCCGGGEEEC
T ss_pred             HhCCCCEEEECCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCcHHHHHHHHHHHhCCCHHHEEec
Confidence            899999999988432  1            45667778888886 55655555544332  333344343 5789886

>3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis}

Probab=98.80  E-value=6.2e-09  Score=99.16  Aligned_cols=124  Identities=19%  Similarity=0.201  Sum_probs=85.6

Q ss_pred             CCccEEEEECC-CcchHHHHHHHHHCCC--eeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc
Q psy9056         218 TPVKTVAVLGA-GLMGAGIAHVTVDKGY--NTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY  294 (359)
Q Consensus       218 ~~~~kI~IIG~-G~mG~~iA~~l~~~G~--~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~  294 (359)
                      +..+||+|||+ |.+|.++|..++..|.  +|+++|+++++++.....+++..        +.       ..++.+++++
T Consensus         6 ~~~~KV~ViGaaG~VG~~~a~~l~~~g~~~evvLiDi~~~k~~g~a~DL~~~~--------~~-------~~~i~~t~d~   70 (343)
T 3fi9_A            6 LTEEKLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPFAVGLEGVAEEIRHCG--------FE-------GLNLTFTSDI   70 (343)
T ss_dssp             SCSSEEEEETTTSHHHHHHHHHHHHTTCCSCEEEECSCHHHHHHHHHHHHHHC--------CT-------TCCCEEESCH
T ss_pred             cCCCEEEEECCCChHHHHHHHHHHhcCCCCEEEEEeCCchhHHHHHHhhhhCc--------CC-------CCceEEcCCH
Confidence            45679999997 9999999999999995  89999999988776554444321        10       1245666776


Q ss_pred             -CCCCCccEEEEccc--------------CCHHHHHHHHHHHHHhCCCCcEEEEcCCCCc--HHHHHhhcCC-CCcEEee
Q psy9056         295 -DPFKNADMVIEAVF--------------EDINIKHQVIKEIEAVVPPHCVVATNTSAIP--ITKIAAASKR-PDKVRNM  356 (359)
Q Consensus       295 -~~l~~aD~Vi~avp--------------~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~--~~~l~~~~~~-~~rvig~  356 (359)
                       +++++||+||++.-              .+..+.+.+.+.+.+++++..+|+..|+...  +..+....+. +.||+|+
T Consensus        71 ~~al~dADvVvitaG~p~kpG~~R~dLl~~N~~I~~~i~~~i~~~~p~a~~vlvvsNPvd~~t~i~~k~sg~p~~rv~g~  150 (343)
T 3fi9_A           71 KEALTDAKYIVSSGGAPRKEGMTREDLLKGNAEIAAQLGKDIKSYCPDCKHVIIIFNPADITGLVTLIYSGLKPSQVTTL  150 (343)
T ss_dssp             HHHHTTEEEEEECCC-------CHHHHHHHHHHHHHHHHHHHHHHCTTCCEEEECSSSHHHHHHHHHHHHTCCGGGEEEE
T ss_pred             HHHhCCCCEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhccCcEEEEEecCchHHHHHHHHHHcCCCcceEEEe
Confidence             67999999999852              2345677788889999865543444444332  3333344443 4788775

>3fef_A Putative glucosidase LPLD; gulosidase, structural genomics, unknown function, glycosidase, hydrolase, manganese, metal-binding, NAD, PSI- 2; 2.20A {Bacillus subtilis}

Probab=98.78  E-value=1.5e-08  Score=99.61  Aligned_cols=120  Identities=14%  Similarity=0.103  Sum_probs=84.2

Q ss_pred             CccEEEEECCCcc--hHHHHHHHHH----CCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhccccccc
Q psy9056         219 PVKTVAVLGAGLM--GAGIAHVTVD----KGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTL  292 (359)
Q Consensus       219 ~~~kI~IIG~G~m--G~~iA~~l~~----~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~  292 (359)
                      +-.||+|||+|+|  |.+++..++.    .| +|++||+++++++.... +.+.+..              ...+++.++
T Consensus         4 ~~~KIaVIGaGs~g~g~~la~~l~~~~~~~g-eV~L~Di~~e~le~~~~-~~~~l~~--------------~~~~I~~Tt   67 (450)
T 3fef_A            4 DQIKIAYIGGGSQGWARSLMSDLSIDERMSG-TVALYDLDFEAAQKNEV-IGNHSGN--------------GRWRYEAVS   67 (450)
T ss_dssp             CCEEEEEETTTCSSHHHHHHHHHHHCSSCCE-EEEEECSSHHHHHHHHH-HHTTSTT--------------SCEEEEEES
T ss_pred             CCCEEEEECCChhHhHHHHHHHHHhccccCC-eEEEEeCCHHHHHHHHH-HHHHHhc--------------cCCeEEEEC
Confidence            3359999999996  6899988887    56 99999999998876533 2211111              224678888


Q ss_pred             Cc-CCCCCccEEEEcccC------------------------------------CHHHHHHHHHHHHHhCCCCcEEEEcC
Q psy9056         293 SY-DPFKNADMVIEAVFE------------------------------------DINIKHQVIKEIEAVVPPHCVVATNT  335 (359)
Q Consensus       293 ~~-~~l~~aD~Vi~avp~------------------------------------~~~~k~~v~~~l~~~~~~~~ii~s~t  335 (359)
                      |. +++++||+||++++.                                    +..+..++.+.+.+++ |+.+++..|
T Consensus        68 D~~eAl~dADfVI~airvG~~~~~~~De~ip~k~G~~~~vget~g~GGi~~alr~~~i~~~i~~~i~~~~-p~a~~i~~t  146 (450)
T 3fef_A           68 TLKKALSAADIVIISILPGSLDDMEVDVHLPERCGIYQSVGDTVGPGGIIRGLRAVPIFAEIARAIRDYA-PESWVINYT  146 (450)
T ss_dssp             SHHHHHTTCSEEEECCCSSCHHHHHHHHHGGGGGTCCCSSCSSSHHHHHHHHHHHHHHHHHHHHHHHHHC-TTSEEEECC
T ss_pred             CHHHHhcCCCEEEeccccCCcccchhhhhhhhccCccccchhhcCCchhhcccccHHHHHHHHHHHHHHC-CCeEEEEec
Confidence            98 678999999999952                                    2234667778899987 567776666


Q ss_pred             CCCcH-H-HHHhhcCCCCcEEee
Q psy9056         336 SAIPI-T-KIAAASKRPDKVRNM  356 (359)
Q Consensus       336 s~~~~-~-~l~~~~~~~~rvig~  356 (359)
                      +...+ + .+...+ ++.|+||+
T Consensus       147 NPvdi~t~~~~k~~-p~~rviG~  168 (450)
T 3fef_A          147 NPMSVCTRVLYKVF-PGIKAIGC  168 (450)
T ss_dssp             SSHHHHHHHHHHHC-TTCEEEEC
T ss_pred             CchHHHHHHHHHHC-CCCCEEEe
Confidence            65543 3 333333 45789884

>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B

Probab=98.78  E-value=2.7e-09  Score=102.09  Aligned_cols=114  Identities=17%  Similarity=0.125  Sum_probs=80.2

Q ss_pred             cEEEEECCCcchHHHHHHHH-HCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CCCC
Q psy9056         221 KTVAVLGAGLMGAGIAHVTV-DKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DPFK  298 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~-~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~l~  298 (359)
                      ++|+|||.|.||..+|..+. ..|++|++||++++..+....           .             .+...+++ +.++
T Consensus       164 ~~vgIIG~G~IG~~vA~~l~~~~G~~V~~~d~~~~~~~~~~~-----------~-------------g~~~~~~l~ell~  219 (348)
T 2w2k_A          164 HVLGAVGLGAIQKEIARKAVHGLGMKLVYYDVAPADAETEKA-----------L-------------GAERVDSLEELAR  219 (348)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSCCCHHHHHH-----------H-------------TCEECSSHHHHHH
T ss_pred             CEEEEEEECHHHHHHHHHHHHhcCCEEEEECCCCcchhhHhh-----------c-------------CcEEeCCHHHHhc
Confidence            68999999999999999999 999999999998764433210           0             12222344 3478


Q ss_pred             CccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCC--CcHHHHHhhcCCCCcE--EeecCC
Q psy9056         299 NADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSA--IPITKIAAASKRPDKV--RNMGRI  359 (359)
Q Consensus       299 ~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~--~~~~~l~~~~~~~~rv--ig~h~~  359 (359)
                      +||+|++++|.+.+.+.-+.+++.+.++++++|++.+++  +....+.+.+.. .++  .|+++|
T Consensus       220 ~aDvVil~vp~~~~t~~li~~~~l~~mk~gailin~srg~~vd~~aL~~aL~~-~~i~gaglDv~  283 (348)
T 2w2k_A          220 RSDCVSVSVPYMKLTHHLIDEAFFAAMKPGSRIVNTARGPVISQDALIAALKS-GKLLSAGLDVH  283 (348)
T ss_dssp             HCSEEEECCCCSGGGTTCBCHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHT-TSEEEEEESSC
T ss_pred             cCCEEEEeCCCChHHHHHhhHHHHhcCCCCCEEEECCCCchhCHHHHHHHHHh-CCceEEEeccC
Confidence            999999999987754433335566678999999877766  444567766653 233  456654

>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A

Probab=98.76  E-value=2.4e-09  Score=101.72  Aligned_cols=116  Identities=12%  Similarity=0.057  Sum_probs=78.4

Q ss_pred             CccEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CCC
Q psy9056         219 PVKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DPF  297 (359)
Q Consensus       219 ~~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~l  297 (359)
                      .-++|+|||+|.||..+|..+...|++|++||+++++.+...           +.             .+... ++ +.+
T Consensus       154 ~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~-----------~~-------------g~~~~-~l~e~l  208 (330)
T 2gcg_A          154 TQSTVGIIGLGRIGQAIARRLKPFGVQRFLYTGRQPRPEEAA-----------EF-------------QAEFV-STPELA  208 (330)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHGGGTCCEEEEESSSCCHHHHH-----------TT-------------TCEEC-CHHHHH
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCcchhHHH-----------hc-------------CceeC-CHHHHH
Confidence            346899999999999999999999999999999876433211           00             12222 34 347


Q ss_pred             CCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCC--CcHHHHHhhcCC-CCcEEeecCC
Q psy9056         298 KNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSA--IPITKIAAASKR-PDKVRNMGRI  359 (359)
Q Consensus       298 ~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~--~~~~~l~~~~~~-~~rvig~h~~  359 (359)
                      ++||+|++++|.+...+.-+.+++.+.++++++|++.+++  .....+.+.+.. .-...++++|
T Consensus       209 ~~aDvVi~~vp~~~~t~~~i~~~~~~~mk~gailIn~srg~~v~~~aL~~aL~~~~i~ga~lDv~  273 (330)
T 2gcg_A          209 AQSDFIVVACSLTPATEGLCNKDFFQKMKETAVFINISRGDVVNQDDLYQALASGKIAAAGLDVT  273 (330)
T ss_dssp             HHCSEEEECCCCCTTTTTCBSHHHHHHSCTTCEEEECSCGGGBCHHHHHHHHHHTSSSEEEESCC
T ss_pred             hhCCEEEEeCCCChHHHHhhCHHHHhcCCCCcEEEECCCCcccCHHHHHHHHHcCCccEEEeCCC
Confidence            8999999999987643332325566778899999877766  334566655532 2223455553

>1s6y_A 6-phospho-beta-glucosidase; hydrolase, structural genomics, PSI, protein structure initi midwest center for structural genomics; 2.31A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.2

Probab=98.76  E-value=3.6e-08  Score=97.29  Aligned_cols=123  Identities=15%  Similarity=0.165  Sum_probs=84.7

Q ss_pred             cEEEEECCCcc-hHHHHHHHHHC-----CCeeEEecCCH--HHHHHHHHHHHHhHHHHHhhccCChHHHHhhhccccccc
Q psy9056         221 KTVAVLGAGLM-GAGIAHVTVDK-----GYNTIVKDSFE--KGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTL  292 (359)
Q Consensus       221 ~kI~IIG~G~m-G~~iA~~l~~~-----G~~V~l~d~~~--~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~  292 (359)
                      .||+|||+|++ |.+++..++.+     +.+|++||+++  ++++.... +.+.+   .....        ...+++.++
T Consensus         8 ~KIaVIGaGsv~~~al~~~L~~~~~~l~~~ev~L~Di~~~~e~~~~~~~-~~~~~---~~~~~--------~~~~i~~t~   75 (450)
T 1s6y_A            8 LKIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGA-LAKRM---VEKAG--------VPIEIHLTL   75 (450)
T ss_dssp             EEEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHHH-HHHHH---HHHTT--------CCCEEEEES
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCCCCCCEEEEEEcCCChHHHHHHHH-HHHHH---HhhcC--------CCcEEEEeC
Confidence            58999999999 88888888874     56899999999  88776432 22211   11100        012466677


Q ss_pred             Cc-CCCCCccEEEEcccCCH----------------------------------HHHHHHHHHHHHhCCCCcEEEEcCCC
Q psy9056         293 SY-DPFKNADMVIEAVFEDI----------------------------------NIKHQVIKEIEAVVPPHCVVATNTSA  337 (359)
Q Consensus       293 ~~-~~l~~aD~Vi~avp~~~----------------------------------~~k~~v~~~l~~~~~~~~ii~s~ts~  337 (359)
                      |+ +++++||+||++++...                                  .+.+++.+.+.+++ |+.+++..|+.
T Consensus        76 D~~eal~gAD~VVitagv~~~~~~~rd~~ip~~~g~~~~et~G~ggi~~~~rni~i~~~i~~~i~~~~-P~a~ii~~tNP  154 (450)
T 1s6y_A           76 DRRRALDGADFVTTQFRVGGLEARAKDERIPLKYGVIGQETNGPGGLFKGLRTIPVILDIIRDMEELC-PDAWLINFTNP  154 (450)
T ss_dssp             CHHHHHTTCSEEEECCCTTHHHHHHHHHHTGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHC-TTCEEEECSSS
T ss_pred             CHHHHhCCCCEEEEcCCCCCCcchhhhhhhhhhcCcccccccccchHHHHhhhHHHHHHHHHHHHHHC-CCeEEEEeCCc
Confidence            87 78999999999998532                                  24667778899997 56777666666


Q ss_pred             CcH-HHHHhhcCCCCcEEee
Q psy9056         338 IPI-TKIAAASKRPDKVRNM  356 (359)
Q Consensus       338 ~~~-~~l~~~~~~~~rvig~  356 (359)
                      ..+ +.......++.|+||+
T Consensus       155 vdivT~a~~k~~p~~rViG~  174 (450)
T 1s6y_A          155 AGMVTEAVLRYTKQEKVVGL  174 (450)
T ss_dssp             HHHHHHHHHHHCCCCCEEEC
T ss_pred             HHHHHHHHHHhCCCCCEEEe
Confidence            554 3444334455699995

>3fr7_A Putative ketol-acid reductoisomerase (OS05G057370 protein); rossmann fold, NADPH, knotted protein, branched-chain amino biosynthesis; 1.55A {Oryza sativa japonica group} PDB: 3fr8_A* 1qmg_A* 1yve_I*

Probab=98.76  E-value=5.8e-09  Score=102.48  Aligned_cols=111  Identities=11%  Similarity=0.126  Sum_probs=80.0

Q ss_pred             ccEEEEECCCcchHHHHHHHHHC------CCeeEEecCCHH-HHHHHHHHHHHhHHHHHhhccCChHHHHhhhccccc--
Q psy9056         220 VKTVAVLGAGLMGAGIAHVTVDK------GYNTIVKDSFEK-GLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVG--  290 (359)
Q Consensus       220 ~~kI~IIG~G~mG~~iA~~l~~~------G~~V~l~d~~~~-~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~--  290 (359)
                      +++|+|||.|+||.++|..|.++      |++|++.+++.+ ..+.+.           +.|             +..  
T Consensus        54 iKkIgIIGlGsMG~AmA~nLr~s~~~~g~G~~ViVg~r~~sks~e~A~-----------e~G-------------~~v~d  109 (525)
T 3fr7_A           54 IKQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKIGLRKGSKSFDEAR-----------AAG-------------FTEES  109 (525)
T ss_dssp             CSEEEEECCTTHHHHHHHHHHHHHHHTTCCCEEEEEECTTCSCHHHHH-----------HTT-------------CCTTT
T ss_pred             CCEEEEEeEhHHHHHHHHHHHhcccccCCCCEEEEEeCCchhhHHHHH-----------HCC-------------CEEec
Confidence            37999999999999999999999      999987766533 222211           111             111  


Q ss_pred             --ccCc-CCCCCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCcHHHHHh---hcCCCCcEEeec
Q psy9056         291 --TLSY-DPFKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPITKIAA---ASKRPDKVRNMG  357 (359)
Q Consensus       291 --~~~~-~~l~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~l~~---~~~~~~rvig~h  357 (359)
                        ..+. ++++++|+||+++|....  ..++++|.++++++++| +.+.|+.+..+.+   .++...+||-.|
T Consensus       110 ~ta~s~aEAa~~ADVVILaVP~~~~--~eVl~eI~p~LK~GaIL-s~AaGf~I~~le~~~i~~p~dv~VVrVm  179 (525)
T 3fr7_A          110 GTLGDIWETVSGSDLVLLLISDAAQ--ADNYEKIFSHMKPNSIL-GLSHGFLLGHLQSAGLDFPKNISVIAVC  179 (525)
T ss_dssp             TCEEEHHHHHHHCSEEEECSCHHHH--HHHHHHHHHHSCTTCEE-EESSSHHHHHHHHTTCCCCTTSEEEEEE
T ss_pred             CCCCCHHHHHhcCCEEEECCChHHH--HHHHHHHHHhcCCCCeE-EEeCCCCHHHHhhhcccCCCCCcEEEEe
Confidence              1233 567899999999997653  46888999999999985 8888999888775   333334566554

>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A*

Probab=98.73  E-value=4.6e-08  Score=92.66  Aligned_cols=122  Identities=16%  Similarity=0.170  Sum_probs=82.9

Q ss_pred             CccEEEEECCCcchHHHHHHHHHCCC--eeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhccccc-ccCcC
Q psy9056         219 PVKTVAVLGAGLMGAGIAHVTVDKGY--NTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVG-TLSYD  295 (359)
Q Consensus       219 ~~~kI~IIG~G~mG~~iA~~l~~~G~--~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~-~~~~~  295 (359)
                      +-.||+|||+|.+|.+++..++..++  +|+++|+++++++.....+.+...               ....+++ .++++
T Consensus         8 ~~~KI~IiGaG~vG~~la~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~~---------------~~~~~~i~~~~~~   72 (326)
T 2zqz_A            8 DHQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLSNALP---------------FTSPKKIYSAEYS   72 (326)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTGG---------------GSCCCEEEECCGG
T ss_pred             CCCEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCCchHhHHHHHHHHHHHH---------------hcCCeEEEECCHH
Confidence            33699999999999999999999887  899999999887765444443221               0012222 24568


Q ss_pred             CCCCccEEEEcccCCH--------------HHHHHHHHHHHHhCCCCcEEEEcCCCCcH--HHHHhhcCC-CCcEEee
Q psy9056         296 PFKNADMVIEAVFEDI--------------NIKHQVIKEIEAVVPPHCVVATNTSAIPI--TKIAAASKR-PDKVRNM  356 (359)
Q Consensus       296 ~l~~aD~Vi~avp~~~--------------~~k~~v~~~l~~~~~~~~ii~s~ts~~~~--~~l~~~~~~-~~rvig~  356 (359)
                      ++++||+||++++...              .+.+++.+.+.+++ |+.+|+..|+...+  ..+....+. +.|++|+
T Consensus        73 a~~~aDvVii~ag~~~k~g~~R~dl~~~n~~i~~~i~~~i~~~~-p~a~iiv~tNPv~~~t~~~~k~s~~p~~rviG~  149 (326)
T 2zqz_A           73 DAKDADLVVITAGAPQKPGETRLDLVNKNLKILKSIVDPIVDSG-FNGIFLVAANPVDILTYATWKLSGFPKNRVVGS  149 (326)
T ss_dssp             GGGGCSEEEECCCCC-----CHHHHHHHHHHHHHHHHHHHHHHT-CCSEEEECSSSHHHHHHHHHHHHCCCGGGEEEC
T ss_pred             HhCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEeCCcHHHHHHHHHHHcCCCHHHEEEc
Confidence            8999999999885432              45666777888887 55655555554433  334344343 5789886

>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1

Probab=98.73  E-value=5.1e-08  Score=92.02  Aligned_cols=120  Identities=16%  Similarity=0.165  Sum_probs=82.2

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCC--eeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhccccc-ccCcCCC
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGY--NTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVG-TLSYDPF  297 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~--~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~l  297 (359)
                      .||+|||+|.+|.+++..++..++  +|+++|+++++++.....+.+... +              ...+++ .++++++
T Consensus         6 ~KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~~-~--------------~~~~~v~~~~~~a~   70 (318)
T 1ez4_A            6 QKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQA-F--------------TAPKKIYSGEYSDC   70 (318)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGG-G--------------SCCCEEEECCGGGG
T ss_pred             CEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCCchHHHHHHHHHHHHHH-h--------------cCCeEEEECCHHHh
Confidence            699999999999999999999987  899999999887764544443321 0              012222 2456889


Q ss_pred             CCccEEEEcccCCH--------------HHHHHHHHHHHHhCCCCcEEEEcCCCCcH--HHHHhhcCC-CCcEEee
Q psy9056         298 KNADMVIEAVFEDI--------------NIKHQVIKEIEAVVPPHCVVATNTSAIPI--TKIAAASKR-PDKVRNM  356 (359)
Q Consensus       298 ~~aD~Vi~avp~~~--------------~~k~~v~~~l~~~~~~~~ii~s~ts~~~~--~~l~~~~~~-~~rvig~  356 (359)
                      ++||+||++++...              .+.+++.+.+.+++ |+.+|+..|+...+  ..+....+. +.|++|+
T Consensus        71 ~~aDvVii~ag~~~~~g~~R~dl~~~n~~i~~~i~~~i~~~~-p~a~iiv~tNPv~~~t~~~~k~s~~p~~rviG~  145 (318)
T 1ez4_A           71 KDADLVVITAGAPQKPGESRLDLVNKNLNILSSIVKPVVDSG-FDGIFLVAANPVDILTYATWKFSGFPKERVIGS  145 (318)
T ss_dssp             TTCSEEEECCCC----------CHHHHHHHHHHHHHHHHHTT-CCSEEEECSSSHHHHHHHHHHHHCCCGGGEEEC
T ss_pred             CCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEeCCcHHHHHHHHHHHcCCCHHHEEec
Confidence            99999999885322              45666777888886 55655555554433  334344343 5789886

>3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A*

Probab=98.73  E-value=3.6e-08  Score=93.26  Aligned_cols=123  Identities=16%  Similarity=0.193  Sum_probs=84.4

Q ss_pred             CCccEEEEECCCcchHHHHHHHHHCCC--eeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccc-cccCc
Q psy9056         218 TPVKTVAVLGAGLMGAGIAHVTVDKGY--NTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLV-GTLSY  294 (359)
Q Consensus       218 ~~~~kI~IIG~G~mG~~iA~~l~~~G~--~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~-~~~~~  294 (359)
                      ...+||+|||+|.+|.++|..++..|+  +|+++|+++++++.....+.+...               ....+. .++++
T Consensus         7 ~~~~kV~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~---------------~~~~~~i~~~~~   71 (326)
T 3vku_A            7 KDHQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLEDALP---------------FTSPKKIYSAEY   71 (326)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTGG---------------GSCCCEEEECCG
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHhhHhhhhh---------------hcCCcEEEECcH
Confidence            344799999999999999999999998  899999999887766555554321               001222 24557


Q ss_pred             CCCCCccEEEEcccC--------------CHHHHHHHHHHHHHhCCCCcEEEEcCCCCcH--HHHHhhcCC-CCcEEee
Q psy9056         295 DPFKNADMVIEAVFE--------------DINIKHQVIKEIEAVVPPHCVVATNTSAIPI--TKIAAASKR-PDKVRNM  356 (359)
Q Consensus       295 ~~l~~aD~Vi~avp~--------------~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~--~~l~~~~~~-~~rvig~  356 (359)
                      +++++||+||++...              +..+.+++.+.+.++++ +.+++..|+...+  ..+....+. +.|++|+
T Consensus        72 ~a~~~aDiVvi~ag~~~kpG~tR~dL~~~N~~I~~~i~~~i~~~~p-~a~ilvvtNPvdi~t~~~~k~~g~p~~rviG~  149 (326)
T 3vku_A           72 SDAKDADLVVITAGAPQKPGETRLDLVNKNLKILKSIVDPIVDSGF-NGIFLVAANPVDILTYATWKLSGFPKNRVVGS  149 (326)
T ss_dssp             GGGTTCSEEEECCCCC----------------CHHHHHHHHHTTTC-CSEEEECSSSHHHHHHHHHHHHCCCGGGEEEC
T ss_pred             HHhcCCCEEEECCCCCCCCCchHHHHHHHHHHHHHHHHHHHHhcCC-ceEEEEccCchHHHHHHHHHhcCCCHHHeeee
Confidence            889999999998632              23355677788888875 6666666654433  334444443 5789885

>2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A

Probab=98.72  E-value=6e-08  Score=91.23  Aligned_cols=121  Identities=19%  Similarity=0.188  Sum_probs=82.0

Q ss_pred             cEEEEECCCcchHHHHHHHHHCC--CeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcCCCC
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKG--YNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPFK  298 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G--~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~  298 (359)
                      +||+|||+|++|.+++..++..+  .+|+++|+++++++.....+.+... +.  ..          -+++. +++++++
T Consensus         1 ~KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di~~~k~~g~a~dl~~~~~-~~--~~----------~~v~~-~~~~a~~   66 (310)
T 2xxj_A            1 MKVGIVGSGMVGSATAYALALLGVAREVVLVDLDRKLAQAHAEDILHATP-FA--HP----------VWVWA-GSYGDLE   66 (310)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHTTGG-GS--CC----------CEEEE-CCGGGGT
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHHHHHhHh-hc--CC----------eEEEE-CCHHHhC
Confidence            48999999999999999999998  4899999999887754444443221 00  00          02332 4578899


Q ss_pred             CccEEEEcccCC--------------HHHHHHHHHHHHHhCCCCcEEEEcCCCCcH--HHHHhhcCC-CCcEEee
Q psy9056         299 NADMVIEAVFED--------------INIKHQVIKEIEAVVPPHCVVATNTSAIPI--TKIAAASKR-PDKVRNM  356 (359)
Q Consensus       299 ~aD~Vi~avp~~--------------~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~--~~l~~~~~~-~~rvig~  356 (359)
                      +||+||++++..              ..+.+++.+.+.++++ +.+|+..|+...+  ..+....+. +.|++|+
T Consensus        67 ~aD~Vii~ag~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p-~a~iiv~tNPv~~~t~~~~k~s~~p~~rviG~  140 (310)
T 2xxj_A           67 GARAVVLAAGVAQRPGETRLQLLDRNAQVFAQVVPRVLEAAP-EAVLLVATNPVDVMTQVAYALSGLPPGRVVGS  140 (310)
T ss_dssp             TEEEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCT-TCEEEECSSSHHHHHHHHHHHHTCCGGGEEEC
T ss_pred             CCCEEEECCCCCCCCCcCHHHHHHhhHHHHHHHHHHHHHHCC-CcEEEEecCchHHHHHHHHHHcCCCHHHEEec
Confidence            999999987432              4566777788888864 5555555554433  333344343 5789886

>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A*

Probab=98.71  E-value=4.6e-09  Score=99.91  Aligned_cols=116  Identities=15%  Similarity=0.087  Sum_probs=79.2

Q ss_pred             CCccEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CC
Q psy9056         218 TPVKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DP  296 (359)
Q Consensus       218 ~~~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~  296 (359)
                      ..-++|+|||+|.||..+|..+...|++|++||++++. +....           .+             +.. +++ +.
T Consensus       148 l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~-~~~~~-----------~g-------------~~~-~~l~~~  201 (334)
T 2dbq_A          148 VYGKTIGIIGLGRIGQAIAKRAKGFNMRILYYSRTRKE-EVERE-----------LN-------------AEF-KPLEDL  201 (334)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCH-HHHHH-----------HC-------------CEE-CCHHHH
T ss_pred             CCCCEEEEEccCHHHHHHHHHHHhCCCEEEEECCCcch-hhHhh-----------cC-------------ccc-CCHHHH
Confidence            34478999999999999999999999999999999865 32110           01             111 234 44


Q ss_pred             CCCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCcHH--HHHhhcCC-CCcEEeecCC
Q psy9056         297 FKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPIT--KIAAASKR-PDKVRNMGRI  359 (359)
Q Consensus       297 l~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~--~l~~~~~~-~~rvig~h~~  359 (359)
                      +++||+|++++|.+.+.+.-+.+++.+.++++++|++.+.+..+.  .+.+.+.. +-...|+++|
T Consensus       202 l~~aDvVil~vp~~~~t~~~i~~~~~~~mk~~ailIn~srg~~v~~~aL~~aL~~~~i~ga~lDv~  267 (334)
T 2dbq_A          202 LRESDFVVLAVPLTRETYHLINEERLKLMKKTAILINIARGKVVDTNALVKALKEGWIAGAGLDVF  267 (334)
T ss_dssp             HHHCSEEEECCCCCTTTTTCBCHHHHHHSCTTCEEEECSCGGGBCHHHHHHHHHHTSSSEEEESCC
T ss_pred             HhhCCEEEECCCCChHHHHhhCHHHHhcCCCCcEEEECCCCcccCHHHHHHHHHhCCeeEEEecCC
Confidence            789999999999887543333256667789999998777664443  45555432 2222456654

>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1

Probab=98.70  E-value=2.1e-08  Score=94.75  Aligned_cols=121  Identities=23%  Similarity=0.274  Sum_probs=76.5

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCC--eeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcCCCC
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGY--NTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPFK  298 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~--~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~  298 (359)
                      .||+|||+|++|.+++..++..|+  +|+++|+++++++.....+.+... ..     .       .-+++. +++++++
T Consensus         8 ~KI~IiGaG~vG~~~a~~l~~~~~~~ev~L~Di~~~~~~g~~~dl~~~~~-~~-----~-------~~~i~~-~~~~a~~   73 (318)
T 1y6j_A            8 SKVAIIGAGFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLP-FM-----G-------QMSLYA-GDYSDVK   73 (318)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCC-CT-----T-------CEEEC---CGGGGT
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHhHH-hc-----C-------CeEEEE-CCHHHhC
Confidence            589999999999999999999998  999999998776643322222110 00     0       002332 4577899


Q ss_pred             CccEEEEcccCCH--------------HHHHHHHHHHHHhCCCCcEEEEcCCCCcH--HHHHhhcC-CCCcEEee
Q psy9056         299 NADMVIEAVFEDI--------------NIKHQVIKEIEAVVPPHCVVATNTSAIPI--TKIAAASK-RPDKVRNM  356 (359)
Q Consensus       299 ~aD~Vi~avp~~~--------------~~k~~v~~~l~~~~~~~~ii~s~ts~~~~--~~l~~~~~-~~~rvig~  356 (359)
                      +||+||++++...              .+.+++.+.+.+++ ++.+|+..|+...+  ..+....+ ++.|++|+
T Consensus        74 ~aDvVii~~g~p~k~g~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~viv~tNPv~~~~~~~~k~s~~p~~rviG~  147 (318)
T 1y6j_A           74 DCDVIVVTAGANRKPGETRLDLAKKNVMIAKEVTQNIMKYY-NHGVILVVSNPVDIITYMIQKWSGLPVGKVIGS  147 (318)
T ss_dssp             TCSEEEECCCC------CHHHHHHHHHHHHHHHHHHHHHHC-CSCEEEECSSSHHHHHHHHHHHHTCCTTTEEEC
T ss_pred             CCCEEEEcCCCCCCCCcCHHHHHHhhHHHHHHHHHHHHHhC-CCcEEEEecCcHHHHHHHHHHHcCCCHHHEecc
Confidence            9999999986533              23467778889886 56655555554333  33334434 35799886

>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A*

Probab=98.69  E-value=1e-08  Score=97.39  Aligned_cols=112  Identities=14%  Similarity=0.092  Sum_probs=78.0

Q ss_pred             CccEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CCC
Q psy9056         219 PVKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DPF  297 (359)
Q Consensus       219 ~~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~l  297 (359)
                      .-++|+|||+|.||..+|..+...|++|++||++++..+                +             ....+++ +.+
T Consensus       163 ~g~~vgIIG~G~iG~~vA~~l~~~G~~V~~~dr~~~~~~----------------g-------------~~~~~~l~ell  213 (333)
T 3ba1_A          163 SGKRVGIIGLGRIGLAVAERAEAFDCPISYFSRSKKPNT----------------N-------------YTYYGSVVELA  213 (333)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHTTTCCEEEECSSCCTTC----------------C-------------SEEESCHHHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCchhcc----------------C-------------ceecCCHHHHH
Confidence            346899999999999999999999999999999875311                0             1122344 457


Q ss_pred             CCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCcH--HHHHhhcCC-CCcEEeecCC
Q psy9056         298 KNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPI--TKIAAASKR-PDKVRNMGRI  359 (359)
Q Consensus       298 ~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~--~~l~~~~~~-~~rvig~h~~  359 (359)
                      ++||+|++++|.+...+.-+-+++.+.++++++|++.+++..+  ..+.+.+.. ..+..++++|
T Consensus       214 ~~aDvVil~vP~~~~t~~li~~~~l~~mk~gailIn~srG~~vd~~aL~~aL~~g~i~ga~lDv~  278 (333)
T 3ba1_A          214 SNSDILVVACPLTPETTHIINREVIDALGPKGVLINIGRGPHVDEPELVSALVEGRLGGAGLDVF  278 (333)
T ss_dssp             HTCSEEEECSCCCGGGTTCBCHHHHHHHCTTCEEEECSCGGGBCHHHHHHHHHHTSSCEEEESCC
T ss_pred             hcCCEEEEecCCChHHHHHhhHHHHhcCCCCCEEEECCCCchhCHHHHHHHHHcCCCeEEEEecC
Confidence            8999999999987643322224455567889999877776544  466666543 2344566654

>3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=98.67  E-value=4.9e-09  Score=97.84  Aligned_cols=101  Identities=17%  Similarity=0.170  Sum_probs=75.7

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcCCC-CC
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPF-KN  299 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l-~~  299 (359)
                      +||+|||+|.||+.+|..|+++|++|++|+++++.++.           ....|..        ...+. .+..+.+ ..
T Consensus         3 mkI~iiGaGa~G~~~a~~L~~~g~~V~~~~r~~~~~~~-----------~~~~g~~--------~~~~~-~~~~~~~~~~   62 (294)
T 3g17_A            3 LSVAIIGPGAVGTTIAYELQQSLPHTTLIGRHAKTITY-----------YTVPHAP--------AQDIV-VKGYEDVTNT   62 (294)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHHCTTCEEEESSCEEEEE-----------ESSTTSC--------CEEEE-EEEGGGCCSC
T ss_pred             cEEEEECCCHHHHHHHHHHHHCCCeEEEEEeccCcEEE-----------EecCCee--------cccee-cCchHhcCCC
Confidence            58999999999999999999999999999999653221           0011100        01111 1223444 88


Q ss_pred             ccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCcHHHH
Q psy9056         300 ADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPITKI  343 (359)
Q Consensus       300 aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~l  343 (359)
                      +|+||+|+|...  .+++++++.++++++++|++..+|+...+.
T Consensus        63 ~D~vilavk~~~--~~~~l~~l~~~l~~~~~iv~~~nGi~~~~~  104 (294)
T 3g17_A           63 FDVIIIAVKTHQ--LDAVIPHLTYLAHEDTLIILAQNGYGQLEH  104 (294)
T ss_dssp             EEEEEECSCGGG--HHHHGGGHHHHEEEEEEEEECCSSCCCGGG
T ss_pred             CCEEEEeCCccC--HHHHHHHHHHhhCCCCEEEEeccCcccHhh
Confidence            999999998765  678999999999999999999999987655

>2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET: NAP; 2.20A {Rattus norvegicus}

Probab=98.11  E-value=2.6e-09  Score=94.31  Aligned_cols=91  Identities=14%  Similarity=0.190  Sum_probs=65.9

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcCCCCCc
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPFKNA  300 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~a  300 (359)
                      ++|+|||+|.||..++..|.+.|++|++||++++ .+....           .             .+...+..+.++++
T Consensus        20 ~~I~iIG~G~mG~~la~~L~~~G~~V~~~~r~~~-~~~~~~-----------~-------------g~~~~~~~~~~~~a   74 (201)
T 2yjz_A           20 GVVCIFGTGDFGKSLGLKMLQCGYSVVFGSRNPQ-VSSLLP-----------R-------------GAEVLCYSEAASRS   74 (201)
Confidence            4799999999999999999999999999999876 332110           0             11222222567899


Q ss_pred             cEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCcH
Q psy9056         301 DMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPI  340 (359)
Q Consensus       301 D~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~  340 (359)
                      |+||.|+|.+.  .+.++ ++... .++++|++.+++++.
T Consensus        75 DvVilav~~~~--~~~v~-~l~~~-~~~~ivI~~~~G~~~  110 (201)
T 2yjz_A           75 DVIVLAVHREH--YDFLA-ELADS-LKGRVLIDVSNNQKM  110 (201)
Confidence            99999999653  44555 45443 467888899988863

>1y7o_A ATP-dependent CLP protease proteolytic subunit; hydrolase; 2.51A {Streptococcus pneumoniae} SCOP: c.14.1.1

Probab=98.66  E-value=2e-08  Score=89.73  Aligned_cols=79  Identities=14%  Similarity=0.151  Sum_probs=63.5

Q ss_pred             CCCCchHHHHHHhcCE--EEEecCCceEEeccccCCCCCCCcch------------------HhHHhhhcCh--HHHHHH
Q psy9056           1 MFAEPSLATVALACHY--RIVVKDKKTGLGLPEVMLGLLPGAGG------------------TQRLPKLTAL--PNVLDM   58 (359)
Q Consensus         1 ~~a~GgG~~lalacD~--ria~~~~~~~~~~pe~~~Gi~p~~g~------------------~~~l~~~~g~--~~a~~~   58 (359)
                      |.|.++|+.|+++||.  |+|.++  ++|+++++. |..+..|.                  ...+++..|.  ..+.++
T Consensus       112 G~AaS~G~~Ia~a~d~g~r~a~p~--a~igih~p~-~g~~~~G~~~di~~~~~~i~~~~~~~~~~~a~~~G~~~~~i~~~  188 (218)
T 1y7o_A          112 GMAASMGTVIASSGAKGKRFMLPN--AEYMIHQPM-GGTGGGTQQTDMAIAPEHLLKTRNTLEKILAENSGQSMEKVHAD  188 (218)
T ss_dssp             EEEETHHHHHHTTSCTTCEEECTT--CEEECCCCC---------------CHHHHHHHHHHHHHHHHHHHTCCHHHHHHH
T ss_pred             cEeHHHHHHHHHcCCcCcEEEcCC--cEEEEeccc-ccccCcCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence            4688999999999999  999988  999999987 44443332                  2557777776  588899


Q ss_pred             HhcCCCCCHHHHHHcCCcceecCC
Q psy9056          59 TLTGKTLKADKAKKMGIVDQLVEP   82 (359)
Q Consensus        59 ~ltg~~~~a~eA~~~Glv~~~~~~   82 (359)
                      +.+++.++++||+++||||+++++
T Consensus       189 ~~~~~~~ta~EA~e~GLVD~v~~~  212 (218)
T 1y7o_A          189 AERDNWMSAQETLEYGFIDEIMAN  212 (218)
T ss_dssp             HHSCCCBCHHHHHHHTSCSEECCC
T ss_pred             HhCCCEEcHHHHHHCCCCcEEcCc
Confidence            999999999999999999999987

>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii}

Probab=98.57  E-value=1.8e-08  Score=95.77  Aligned_cols=113  Identities=18%  Similarity=0.101  Sum_probs=76.1

Q ss_pred             ccEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CCCC
Q psy9056         220 VKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DPFK  298 (359)
Q Consensus       220 ~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~l~  298 (359)
                      -++|+|||+|.||.++|..+...|++|++||++++. +....           .+             +... ++ +.++
T Consensus       146 g~~vgIIG~G~iG~~vA~~l~~~G~~V~~~d~~~~~-~~~~~-----------~g-------------~~~~-~l~e~l~  199 (333)
T 2d0i_A          146 GKKVGILGMGAIGKAIARRLIPFGVKLYYWSRHRKV-NVEKE-----------LK-------------ARYM-DIDELLE  199 (333)
T ss_dssp             TCEEEEECCSHHHHHHHHHHGGGTCEEEEECSSCCH-HHHHH-----------HT-------------EEEC-CHHHHHH
T ss_pred             cCEEEEEccCHHHHHHHHHHHHCCCEEEEECCCcch-hhhhh-----------cC-------------ceec-CHHHHHh
Confidence            368999999999999999999999999999999864 22110           01             1122 34 3468


Q ss_pred             CccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCcHH--HHHhhcCCC-CcEEeecCC
Q psy9056         299 NADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPIT--KIAAASKRP-DKVRNMGRI  359 (359)
Q Consensus       299 ~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~--~l~~~~~~~-~rvig~h~~  359 (359)
                      +||+|++++|.+.+.+.-+-+++.+.++++ ++++.+.+..+.  .+.+.+... -...|+++|
T Consensus       200 ~aDiVil~vp~~~~t~~~i~~~~~~~mk~g-ilin~srg~~vd~~aL~~aL~~~~i~gaglDv~  262 (333)
T 2d0i_A          200 KSDIVILALPLTRDTYHIINEERVKKLEGK-YLVNIGRGALVDEKAVTEAIKQGKLKGYATDVF  262 (333)
T ss_dssp             HCSEEEECCCCCTTTTTSBCHHHHHHTBTC-EEEECSCGGGBCHHHHHHHHHTTCBCEEEESCC
T ss_pred             hCCEEEEcCCCChHHHHHhCHHHHhhCCCC-EEEECCCCcccCHHHHHHHHHcCCceEEEecCC
Confidence            999999999988543333334555678888 887766654443  455555432 334566654

>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum}

Probab=98.54  E-value=1.8e-08  Score=93.79  Aligned_cols=99  Identities=19%  Similarity=0.153  Sum_probs=72.7

Q ss_pred             ccEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CCCC
Q psy9056         220 VKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DPFK  298 (359)
Q Consensus       220 ~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~l~  298 (359)
                      =++|||||.|.||.++|..+...|++|+.||++++..+.                             ....+++ +.++
T Consensus       122 g~tvGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~-----------------------------~~~~~~l~ell~  172 (290)
T 3gvx_A          122 GKALGILGYGGIGRRVAHLAKAFGMRVIAYTRSSVDQNV-----------------------------DVISESPADLFR  172 (290)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHTCEEEEECSSCCCTTC-----------------------------SEECSSHHHHHH
T ss_pred             cchheeeccCchhHHHHHHHHhhCcEEEEEecccccccc-----------------------------ccccCChHHHhh
Confidence            379999999999999999999999999999998753110                             1123344 4578


Q ss_pred             CccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCcH--HHHHhhc
Q psy9056         299 NADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPI--TKIAAAS  347 (359)
Q Consensus       299 ~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~--~~l~~~~  347 (359)
                      +||+|+.++|.+.+...-+-++..+.++++++|++.+.+-.+  ..+.+.+
T Consensus       173 ~aDiV~l~~P~t~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL  223 (290)
T 3gvx_A          173 QSDFVLIAIPLTDKTRGMVNSRLLANARKNLTIVNVARADVVSKPDMIGFL  223 (290)
T ss_dssp             HCSEEEECCCCCTTTTTCBSHHHHTTCCTTCEEEECSCGGGBCHHHHHHHH
T ss_pred             ccCeEEEEeeccccchhhhhHHHHhhhhcCceEEEeehhcccCCcchhhhh
Confidence            999999999976654333336677788999999877765433  4555544

>4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti}

Probab=98.50  E-value=5.3e-08  Score=92.61  Aligned_cols=100  Identities=17%  Similarity=0.168  Sum_probs=62.8

Q ss_pred             ccEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CCCC
Q psy9056         220 VKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DPFK  298 (359)
Q Consensus       220 ~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~l~  298 (359)
                      =++|||||.|.||..+|..+...|++|+.||++++...                             ......++ +.++
T Consensus       171 gktiGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~-----------------------------~~~~~~sl~ell~  221 (340)
T 4dgs_A          171 GKRIGVLGLGQIGRALASRAEAFGMSVRYWNRSTLSGV-----------------------------DWIAHQSPVDLAR  221 (340)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSCCTTS-----------------------------CCEECSSHHHHHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCccccc-----------------------------CceecCCHHHHHh
Confidence            47999999999999999999999999999999875300                             01122344 4578


Q ss_pred             CccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCcH--HHHHhhcC
Q psy9056         299 NADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPI--TKIAAASK  348 (359)
Q Consensus       299 ~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~--~~l~~~~~  348 (359)
                      +||+|+.++|.+.+...-+-++..+.++++++|++.+.+-.+  ..+.+.+.
T Consensus       222 ~aDvVil~vP~t~~t~~li~~~~l~~mk~gailIN~aRG~vvde~aL~~aL~  273 (340)
T 4dgs_A          222 DSDVLAVCVAASAATQNIVDASLLQALGPEGIVVNVARGNVVDEDALIEALK  273 (340)
T ss_dssp             TCSEEEECC----------CHHHHHHTTTTCEEEECSCC-------------
T ss_pred             cCCEEEEeCCCCHHHHHHhhHHHHhcCCCCCEEEECCCCcccCHHHHHHHHH
Confidence            999999999977665444446677788999999877766443  34444443

>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1

Probab=98.45  E-value=7.7e-08  Score=90.90  Aligned_cols=104  Identities=13%  Similarity=0.075  Sum_probs=72.3

Q ss_pred             CccEEEEECCCcchHHHHHHHHHCCCeeEEecC-CHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CC
Q psy9056         219 PVKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDS-FEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DP  296 (359)
Q Consensus       219 ~~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~-~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~  296 (359)
                      .=++|+|||.|.||.++|..+...|++|++||+ +++.. ...           +.+             +...+++ +.
T Consensus       145 ~g~~vgIIG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~~-~~~-----------~~g-------------~~~~~~l~el  199 (320)
T 1gdh_A          145 DNKTLGIYGFGSIGQALAKRAQGFDMDIDYFDTHRASSS-DEA-----------SYQ-------------ATFHDSLDSL  199 (320)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSCCCHH-HHH-----------HHT-------------CEECSSHHHH
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCcChh-hhh-----------hcC-------------cEEcCCHHHH
Confidence            346899999999999999999999999999999 87542 111           001             1122234 45


Q ss_pred             CCCccEEEEcccCCHHHHHHHH-HHHHHhCCCCcEEEEcCCC--CcHHHHHhhcC
Q psy9056         297 FKNADMVIEAVFEDINIKHQVI-KEIEAVVPPHCVVATNTSA--IPITKIAAASK  348 (359)
Q Consensus       297 l~~aD~Vi~avp~~~~~k~~v~-~~l~~~~~~~~ii~s~ts~--~~~~~l~~~~~  348 (359)
                      +++||+|+.++|.+.+.. .++ +...+.++++++|++.+++  +....+.+.+.
T Consensus       200 l~~aDvVil~~p~~~~t~-~~i~~~~l~~mk~gailIn~arg~~vd~~aL~~aL~  253 (320)
T 1gdh_A          200 LSVSQFFSLNAPSTPETR-YFFNKATIKSLPQGAIVVNTARGDLVDNELVVAALE  253 (320)
T ss_dssp             HHHCSEEEECCCCCTTTT-TCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHH
T ss_pred             HhhCCEEEEeccCchHHH-hhcCHHHHhhCCCCcEEEECCCCcccCHHHHHHHHH
Confidence            688999999999765432 233 4456678999999887776  33345555443

>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A

Probab=98.43  E-value=6.9e-08  Score=92.27  Aligned_cols=104  Identities=13%  Similarity=0.130  Sum_probs=73.0

Q ss_pred             ccEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CCCC
Q psy9056         220 VKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DPFK  298 (359)
Q Consensus       220 ~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~l~  298 (359)
                      =++|||||.|.||..+|..+...|.+|+.||+++...+....           .             .+...+++ +.++
T Consensus       164 gktvGIIG~G~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~-----------~-------------g~~~~~~l~ell~  219 (351)
T 3jtm_A          164 GKTIGTVGAGRIGKLLLQRLKPFGCNLLYHDRLQMAPELEKE-----------T-------------GAKFVEDLNEMLP  219 (351)
T ss_dssp             TCEEEEECCSHHHHHHHHHHGGGCCEEEEECSSCCCHHHHHH-----------H-------------CCEECSCHHHHGG
T ss_pred             CCEEeEEEeCHHHHHHHHHHHHCCCEEEEeCCCccCHHHHHh-----------C-------------CCeEcCCHHHHHh
Confidence            369999999999999999999999999999998643222111           0             12223344 4588


Q ss_pred             CccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCcH--HHHHhhc
Q psy9056         299 NADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPI--TKIAAAS  347 (359)
Q Consensus       299 ~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~--~~l~~~~  347 (359)
                      +||+|+.++|-+.+...-+-++..+.++++++|++.+.+-.+  ..+.+.+
T Consensus       220 ~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL  270 (351)
T 3jtm_A          220 KCDVIVINMPLTEKTRGMFNKELIGKLKKGVLIVNNARGAIMERQAVVDAV  270 (351)
T ss_dssp             GCSEEEECSCCCTTTTTCBSHHHHHHSCTTEEEEECSCGGGBCHHHHHHHH
T ss_pred             cCCEEEECCCCCHHHHHhhcHHHHhcCCCCCEEEECcCchhhCHHHHHHHH
Confidence            999999999976553333335566778999999877665333  4555544

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=98.43  E-value=2.1e-06  Score=69.89  Aligned_cols=111  Identities=14%  Similarity=0.102  Sum_probs=66.9

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcCCCCCc
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPFKNA  300 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~a  300 (359)
                      ++|.|+|+|.+|..++..|.+.|++|+++|++++.++.......  ..  .-.+....  .. .   +.    ...+.++
T Consensus         5 m~i~IiG~G~iG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~~~--~~--~~~~d~~~--~~-~---l~----~~~~~~~   70 (140)
T 1lss_A            5 MYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEID--AL--VINGDCTK--IK-T---LE----DAGIEDA   70 (140)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCS--SE--EEESCTTS--HH-H---HH----HTTTTTC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHhcC--cE--EEEcCCCC--HH-H---HH----HcCcccC
Confidence            48999999999999999999999999999999987655432100  00  00000000  00 0   00    0236789


Q ss_pred             cEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCcHHHHHhhcC
Q psy9056         301 DMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPITKIAAASK  348 (359)
Q Consensus       301 D~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~  348 (359)
                      |+||.++|.+.  ....+..+.+.++++.+|+...+ ....+.....+
T Consensus        71 d~vi~~~~~~~--~~~~~~~~~~~~~~~~ii~~~~~-~~~~~~l~~~g  115 (140)
T 1lss_A           71 DMYIAVTGKEE--VNLMSSLLAKSYGINKTIARISE-IEYKDVFERLG  115 (140)
T ss_dssp             SEEEECCSCHH--HHHHHHHHHHHTTCCCEEEECSS-TTHHHHHHHTT
T ss_pred             CEEEEeeCCch--HHHHHHHHHHHcCCCEEEEEecC-HhHHHHHHHcC
Confidence            99999998654  22344445555677777764433 33333333333

>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum}

Probab=98.41  E-value=8.8e-08  Score=90.56  Aligned_cols=103  Identities=14%  Similarity=0.132  Sum_probs=73.5

Q ss_pred             ccEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CCCC
Q psy9056         220 VKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DPFK  298 (359)
Q Consensus       220 ~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~l~  298 (359)
                      =++|||||.|.||..+|..+...|++|+.||++++..+..                          .......++ +.++
T Consensus       137 gktvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~--------------------------~~~~~~~~l~ell~  190 (324)
T 3evt_A          137 GQQLLIYGTGQIGQSLAAKASALGMHVIGVNTTGHPADHF--------------------------HETVAFTATADALA  190 (324)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSCCCCTTC--------------------------SEEEEGGGCHHHHH
T ss_pred             CCeEEEECcCHHHHHHHHHHHhCCCEEEEECCCcchhHhH--------------------------hhccccCCHHHHHh
Confidence            3689999999999999999999999999999986531110                          011112334 4578


Q ss_pred             CccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCc--HHHHHhhcC
Q psy9056         299 NADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIP--ITKIAAASK  348 (359)
Q Consensus       299 ~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~--~~~l~~~~~  348 (359)
                      +||+|+.++|.+.+...-+-++..+.++++++|++.+.+-.  ...+.+.+.
T Consensus       191 ~aDvV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~  242 (324)
T 3evt_A          191 TANFIVNALPLTPTTHHLFSTELFQQTKQQPMLINIGRGPAVDTTALMTALD  242 (324)
T ss_dssp             HCSEEEECCCCCGGGTTCBSHHHHHTCCSCCEEEECSCGGGBCHHHHHHHHH
T ss_pred             hCCEEEEcCCCchHHHHhcCHHHHhcCCCCCEEEEcCCChhhhHHHHHHHHH
Confidence            99999999997765443334566777899999987776533  345555553

>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum}

Probab=98.41  E-value=8.5e-08  Score=91.67  Aligned_cols=94  Identities=15%  Similarity=0.136  Sum_probs=68.5

Q ss_pred             ccEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CCCC
Q psy9056         220 VKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DPFK  298 (359)
Q Consensus       220 ~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~l~  298 (359)
                      =++|||||.|.||.++|..+...|.+|+.||+++.. +...           ..             .+...+++ +.++
T Consensus       160 g~tvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~~~-----------~~-------------g~~~~~~l~ell~  214 (352)
T 3gg9_A          160 GQTLGIFGYGKIGQLVAGYGRAFGMNVLVWGRENSK-ERAR-----------AD-------------GFAVAESKDALFE  214 (352)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSHHHH-HHHH-----------HT-------------TCEECSSHHHHHH
T ss_pred             CCEEEEEeECHHHHHHHHHHHhCCCEEEEECCCCCH-HHHH-----------hc-------------CceEeCCHHHHHh
Confidence            369999999999999999999999999999998632 1110           11             12233344 4578


Q ss_pred             CccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCC
Q psy9056         299 NADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAI  338 (359)
Q Consensus       299 ~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~  338 (359)
                      +||+|+.++|-+.+...-+-++..+.++++++|+..+.+-
T Consensus       215 ~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~  254 (352)
T 3gg9_A          215 QSDVLSVHLRLNDETRSIITVADLTRMKPTALFVNTSRAE  254 (352)
T ss_dssp             HCSEEEECCCCSTTTTTCBCHHHHTTSCTTCEEEECSCGG
T ss_pred             hCCEEEEeccCcHHHHHhhCHHHHhhCCCCcEEEECCCch
Confidence            9999999999776543333355667789999998776553

>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp}

Probab=98.40  E-value=4e-08  Score=92.87  Aligned_cols=104  Identities=15%  Similarity=0.160  Sum_probs=71.7

Q ss_pred             CccEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CCC
Q psy9056         219 PVKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DPF  297 (359)
Q Consensus       219 ~~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~l  297 (359)
                      .=++|||||.|.||.++|..+...|++|+.||++++..+..                          .......++ +.+
T Consensus       139 ~g~tvGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~--------------------------~~~~~~~~l~ell  192 (324)
T 3hg7_A          139 KGRTLLILGTGSIGQHIAHTGKHFGMKVLGVSRSGRERAGF--------------------------DQVYQLPALNKML  192 (324)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCCTTC--------------------------SEEECGGGHHHHH
T ss_pred             ccceEEEEEECHHHHHHHHHHHhCCCEEEEEcCChHHhhhh--------------------------hcccccCCHHHHH
Confidence            34799999999999999999999999999999987421100                          011112334 457


Q ss_pred             CCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCcH--HHHHhhcC
Q psy9056         298 KNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPI--TKIAAASK  348 (359)
Q Consensus       298 ~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~--~~l~~~~~  348 (359)
                      ++||+|+.++|-+.+...-+-++..+.++++++|++.+.+-.+  ..+.+.+.
T Consensus       193 ~~aDvV~l~lPlt~~T~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~  245 (324)
T 3hg7_A          193 AQADVIVSVLPATRETHHLFTASRFEHCKPGAILFNVGRGNAINEGDLLTALR  245 (324)
T ss_dssp             HTCSEEEECCCCCSSSTTSBCTTTTTCSCTTCEEEECSCGGGBCHHHHHHHHH
T ss_pred             hhCCEEEEeCCCCHHHHHHhHHHHHhcCCCCcEEEECCCchhhCHHHHHHHHH
Confidence            8999999999976543322334455668999999877765443  45555543

>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A

Probab=98.38  E-value=6.8e-08  Score=90.98  Aligned_cols=102  Identities=18%  Similarity=0.187  Sum_probs=71.6

Q ss_pred             ccEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CCCC
Q psy9056         220 VKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DPFK  298 (359)
Q Consensus       220 ~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~l~  298 (359)
                      =++|||||.|.||..+|..+...|++|+.||++++..+..                          .......++ +.++
T Consensus       139 g~tvGIiG~G~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~--------------------------~~~~~~~~l~ell~  192 (315)
T 3pp8_A          139 EFSVGIMGAGVLGAKVAESLQAWGFPLRCWSRSRKSWPGV--------------------------ESYVGREELRAFLN  192 (315)
T ss_dssp             TCCEEEECCSHHHHHHHHHHHTTTCCEEEEESSCCCCTTC--------------------------EEEESHHHHHHHHH
T ss_pred             CCEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCchhhhhh--------------------------hhhcccCCHHHHHh
Confidence            4689999999999999999999999999999987532110                          000001233 4578


Q ss_pred             CccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCc--HHHHHhhc
Q psy9056         299 NADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIP--ITKIAAAS  347 (359)
Q Consensus       299 ~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~--~~~l~~~~  347 (359)
                      +||+|+.++|-+.+...-+-++..+.++++++|++.+.|-.  ...+.+.+
T Consensus       193 ~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL  243 (315)
T 3pp8_A          193 QTRVLINLLPNTAQTVGIINSELLDQLPDGAYVLNLARGVHVQEADLLAAL  243 (315)
T ss_dssp             TCSEEEECCCCCGGGTTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHH
T ss_pred             hCCEEEEecCCchhhhhhccHHHHhhCCCCCEEEECCCChhhhHHHHHHHH
Confidence            99999999997765433333566777899999987766533  34555554

>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii}

Probab=98.38  E-value=1.5e-07  Score=88.65  Aligned_cols=104  Identities=16%  Similarity=0.242  Sum_probs=72.1

Q ss_pred             CCccEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CC
Q psy9056         218 TPVKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DP  296 (359)
Q Consensus       218 ~~~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~  296 (359)
                      ..-++|+|||.|.||.++|..+...|++|++||++++... ..           +.|             ... .++ +.
T Consensus       140 l~g~~vgIIG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~~-~~-----------~~g-------------~~~-~~l~el  193 (313)
T 2ekl_A          140 LAGKTIGIVGFGRIGTKVGIIANAMGMKVLAYDILDIREK-AE-----------KIN-------------AKA-VSLEEL  193 (313)
T ss_dssp             CTTCEEEEESCSHHHHHHHHHHHHTTCEEEEECSSCCHHH-HH-----------HTT-------------CEE-CCHHHH
T ss_pred             CCCCEEEEEeeCHHHHHHHHHHHHCCCEEEEECCCcchhH-HH-----------hcC-------------cee-cCHHHH
Confidence            3447999999999999999999999999999999986521 10           011             111 133 44


Q ss_pred             CCCccEEEEcccCCHHHHHHHH-HHHHHhCCCCcEEEEcCCCCcH--HHHHhhcC
Q psy9056         297 FKNADMVIEAVFEDINIKHQVI-KEIEAVVPPHCVVATNTSAIPI--TKIAAASK  348 (359)
Q Consensus       297 l~~aD~Vi~avp~~~~~k~~v~-~~l~~~~~~~~ii~s~ts~~~~--~~l~~~~~  348 (359)
                      ++.+|+|+.++|.+.+.. .++ +...+.+++++++++.+.+-.+  ..+.+.+.
T Consensus       194 l~~aDvVvl~~P~~~~t~-~li~~~~l~~mk~ga~lIn~arg~~vd~~aL~~aL~  247 (313)
T 2ekl_A          194 LKNSDVISLHVTVSKDAK-PIIDYPQFELMKDNVIIVNTSRAVAVNGKALLDYIK  247 (313)
T ss_dssp             HHHCSEEEECCCCCTTSC-CSBCHHHHHHSCTTEEEEESSCGGGBCHHHHHHHHH
T ss_pred             HhhCCEEEEeccCChHHH-HhhCHHHHhcCCCCCEEEECCCCcccCHHHHHHHHH
Confidence            688999999999766422 223 4455668899999887776333  35555554

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=98.38  E-value=3.3e-06  Score=69.29  Aligned_cols=108  Identities=11%  Similarity=0.124  Sum_probs=66.3

Q ss_pred             CccEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcCCCC
Q psy9056         219 PVKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPFK  298 (359)
Q Consensus       219 ~~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~  298 (359)
                      .+++|.|+|+|.+|..++..|.+.|++|+++|+++++++......   ..  .-.+..+..   ..+.       ...+.
T Consensus         5 ~~~~v~I~G~G~iG~~la~~L~~~g~~V~~id~~~~~~~~~~~~~---~~--~~~gd~~~~---~~l~-------~~~~~   69 (141)
T 3llv_A            5 GRYEYIVIGSEAAGVGLVRELTAAGKKVLAVDKSKEKIELLEDEG---FD--AVIADPTDE---SFYR-------SLDLE   69 (141)
T ss_dssp             -CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHTT---CE--EEECCTTCH---HHHH-------HSCCT
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHCC---Cc--EEECCCCCH---HHHH-------hCCcc
Confidence            467899999999999999999999999999999998876643210   00  000100000   0000       01357


Q ss_pred             CccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCcHHHH
Q psy9056         299 NADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPITKI  343 (359)
Q Consensus       299 ~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~l  343 (359)
                      ++|+||.++|++ +....+...+.+.. ...|++...+....+.+
T Consensus        70 ~~d~vi~~~~~~-~~n~~~~~~a~~~~-~~~iia~~~~~~~~~~l  112 (141)
T 3llv_A           70 GVSAVLITGSDD-EFNLKILKALRSVS-DVYAIVRVSSPKKKEEF  112 (141)
T ss_dssp             TCSEEEECCSCH-HHHHHHHHHHHHHC-CCCEEEEESCGGGHHHH
T ss_pred             cCCEEEEecCCH-HHHHHHHHHHHHhC-CceEEEEEcChhHHHHH
Confidence            899999999843 33333444445544 55677655554434444

>1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A

Probab=98.37  E-value=2e-06  Score=80.57  Aligned_cols=120  Identities=15%  Similarity=0.196  Sum_probs=77.8

Q ss_pred             cEEEEEC-CCcchHHHHHHHHHCCC--eeEEecC--CHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhccccc-ccCc
Q psy9056         221 KTVAVLG-AGLMGAGIAHVTVDKGY--NTIVKDS--FEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVG-TLSY  294 (359)
Q Consensus       221 ~kI~IIG-~G~mG~~iA~~l~~~G~--~V~l~d~--~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~-~~~~  294 (359)
                      +||+|+| +|.+|.+++..++..|+  ++.++|+  ++++++.....+.+...    .           ...+.+ .+++
T Consensus         1 mKI~IiGAaG~vG~~l~~~L~~~~~~~el~L~Di~~~~~~~~~~~~dl~~~~~----~-----------~~~~~v~~~~~   65 (303)
T 1o6z_A            1 TKVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIA----Y-----------DSNTRVRQGGY   65 (303)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHHT----T-----------TCCCEEEECCG
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEcCCCChhhHHHHHHHHHHHHh----h-----------CCCcEEEeCCH
Confidence            4899999 99999999999999886  7999999  88765543333322111    0           011222 1356


Q ss_pred             CCCCCccEEEEcccC--C------------HHHHHHHHHHHHHhCCCCcEEEEcCCCCcH--HHHHhhcCC-CCcEEee
Q psy9056         295 DPFKNADMVIEAVFE--D------------INIKHQVIKEIEAVVPPHCVVATNTSAIPI--TKIAAASKR-PDKVRNM  356 (359)
Q Consensus       295 ~~l~~aD~Vi~avp~--~------------~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~--~~l~~~~~~-~~rvig~  356 (359)
                      ++++++|+||.+...  .            ..+.+.+.+.+.++. ++.+|+..|+...+  ..+....+. +.|++|+
T Consensus        66 ~a~~~aDvVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~~~viv~SNPv~~~~~~~~~~~~~p~~rviG~  143 (303)
T 1o6z_A           66 EDTAGSDVVVITAGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEHN-DDYISLTTSNPVDLLNRHLYEAGDRSREQVIGF  143 (303)
T ss_dssp             GGGTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHTTC-SCCEEEECCSSHHHHHHHHHHHSSSCGGGEEEC
T ss_pred             HHhCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCcEEEEeCChHHHHHHHHHHHcCCCHHHeeec
Confidence            789999999998732  1            135667778888875 45655555554433  334344443 4789986

>1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii}

Probab=98.35  E-value=2.3e-07  Score=87.17  Aligned_cols=103  Identities=17%  Similarity=0.196  Sum_probs=70.7

Q ss_pred             CccEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CCC
Q psy9056         219 PVKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DPF  297 (359)
Q Consensus       219 ~~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~l  297 (359)
                      .-++|+|||.|.||.++|..+...|++|++||++++. +...           +.|             +... ++ +.+
T Consensus       141 ~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~~~-~~~~-----------~~g-------------~~~~-~l~ell  194 (307)
T 1wwk_A          141 EGKTIGIIGFGRIGYQVAKIANALGMNILLYDPYPNE-ERAK-----------EVN-------------GKFV-DLETLL  194 (307)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCH-HHHH-----------HTT-------------CEEC-CHHHHH
T ss_pred             CCceEEEEccCHHHHHHHHHHHHCCCEEEEECCCCCh-hhHh-----------hcC-------------cccc-CHHHHH
Confidence            3468999999999999999999999999999999865 2111           001             1111 33 446


Q ss_pred             CCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCcH--HHHHhhc
Q psy9056         298 KNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPI--TKIAAAS  347 (359)
Q Consensus       298 ~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~--~~l~~~~  347 (359)
                      ++||+|+.++|.+.+.+.-+-+...+.+++++++++.+.+-.+  ..+.+.+
T Consensus       195 ~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lin~arg~~vd~~aL~~aL  246 (307)
T 1wwk_A          195 KESDVVTIHVPLVESTYHLINEERLKLMKKTAILINTSRGPVVDTNALVKAL  246 (307)
T ss_dssp             HHCSEEEECCCCSTTTTTCBCHHHHHHSCTTCEEEECSCGGGBCHHHHHHHH
T ss_pred             hhCCEEEEecCCChHHhhhcCHHHHhcCCCCeEEEECCCCcccCHHHHHHHH
Confidence            8899999999976643222214455678899999877776433  3444443

>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP}

Probab=98.34  E-value=1.5e-07  Score=89.59  Aligned_cols=101  Identities=15%  Similarity=0.109  Sum_probs=72.0

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CCCCC
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DPFKN  299 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~l~~  299 (359)
                      ++|||||.|.||..+|..+...|.+|+.||+++...+..             .             .....+++ +.+++
T Consensus       174 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~-------------~-------------g~~~~~~l~ell~~  227 (345)
T 4g2n_A          174 RRLGIFGMGRIGRAIATRARGFGLAIHYHNRTRLSHALE-------------E-------------GAIYHDTLDSLLGA  227 (345)
T ss_dssp             CEEEEESCSHHHHHHHHHHHTTTCEEEEECSSCCCHHHH-------------T-------------TCEECSSHHHHHHT
T ss_pred             CEEEEEEeChhHHHHHHHHHHCCCEEEEECCCCcchhhh-------------c-------------CCeEeCCHHHHHhh
Confidence            689999999999999999999999999999986432210             0             11223344 45789


Q ss_pred             ccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCc--HHHHHhhc
Q psy9056         300 ADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIP--ITKIAAAS  347 (359)
Q Consensus       300 aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~--~~~l~~~~  347 (359)
                      ||+|+.++|-+.+...-+-++..+.++++.+|+..+.+-.  ...+.+.+
T Consensus       228 sDvV~l~~Plt~~T~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL  277 (345)
T 4g2n_A          228 SDIFLIAAPGRPELKGFLDHDRIAKIPEGAVVINISRGDLINDDALIEAL  277 (345)
T ss_dssp             CSEEEECSCCCGGGTTCBCHHHHHHSCTTEEEEECSCGGGBCHHHHHHHH
T ss_pred             CCEEEEecCCCHHHHHHhCHHHHhhCCCCcEEEECCCCchhCHHHHHHHH
Confidence            9999999997765433333556677899999987766533  34555554

>2f9i_A Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; zinc ribbon, crotonase superfamily, spiral domain; 1.98A {Staphylococcus aureus}

Probab=98.34  E-value=1.8e-07  Score=88.36  Aligned_cols=70  Identities=10%  Similarity=0.118  Sum_probs=55.1

Q ss_pred             CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceec
Q psy9056           1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLV   80 (359)
Q Consensus         1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~   80 (359)
                      |.|.|||+.++++||++||.++  ++|++      +.|.++.+.++.+..+...+.++    ..++|++|+++|+||+++
T Consensus       207 G~a~GGGa~~~~~~D~via~~~--A~~~v------~~peg~a~il~~~~~~a~~A~e~----~~itA~~a~~~GlVd~VV  274 (327)
T 2f9i_A          207 GEGGSGGALGIGIANKVLMLEN--STYSV------ISPEGAAALLWKDSNLAKIAAET----MKITAHDIKQLGIIDDVI  274 (327)
T ss_dssp             EEEBHHHHHTTCCCSEEEEETT--CBCBS------SCHHHHHHHHSSCGGGHHHHHHH----HTCBHHHHHHTTSSSEEE
T ss_pred             CCcChHHHHHHHCCCEEEEcCC--ceEee------cCchHHHHHHHHHhcchHHHHHH----cCCCHHHHHHcCCceEEe
Confidence            3578999999999999999988  88885      34555555554444444667766    789999999999999999


Q ss_pred             CC
Q psy9056          81 EP   82 (359)
Q Consensus        81 ~~   82 (359)
                      |.
T Consensus       275 ~e  276 (327)
T 2f9i_A          275 SE  276 (327)
T ss_dssp             CC
T ss_pred             cC
Confidence            84

>1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1

Probab=98.34  E-value=2.9e-07  Score=86.23  Aligned_cols=99  Identities=17%  Similarity=0.106  Sum_probs=70.5

Q ss_pred             CccEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CCC
Q psy9056         219 PVKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DPF  297 (359)
Q Consensus       219 ~~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~l  297 (359)
                      .-++|+|||.|.||.++|..+...|++|+.||++++  +.               +             .....++ +.+
T Consensus       123 ~g~~vgIIG~G~IG~~~A~~l~~~G~~V~~~dr~~~--~~---------------~-------------~~~~~~l~ell  172 (303)
T 1qp8_A          123 QGEKVAVLGLGEIGTRVGKILAALGAQVRGFSRTPK--EG---------------P-------------WRFTNSLEEAL  172 (303)
T ss_dssp             TTCEEEEESCSTHHHHHHHHHHHTTCEEEEECSSCC--CS---------------S-------------SCCBSCSHHHH
T ss_pred             CCCEEEEEccCHHHHHHHHHHHHCCCEEEEECCCcc--cc---------------C-------------cccCCCHHHHH
Confidence            346899999999999999999999999999999864  10               0             0112233 457


Q ss_pred             CCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCcH--HHHHhhc
Q psy9056         298 KNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPI--TKIAAAS  347 (359)
Q Consensus       298 ~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~--~~l~~~~  347 (359)
                      +.||+|+.++|.+.+...-+-++..+.++++++++..+++-.+  ..+.+.+
T Consensus       173 ~~aDvV~l~~P~~~~t~~~i~~~~l~~mk~gailin~srg~~vd~~aL~~aL  224 (303)
T 1qp8_A          173 REARAAVCALPLNKHTRGLVKYQHLALMAEDAVFVNVGRAEVLDRDGVLRIL  224 (303)
T ss_dssp             TTCSEEEECCCCSTTTTTCBCHHHHTTSCTTCEEEECSCGGGBCHHHHHHHH
T ss_pred             hhCCEEEEeCcCchHHHHHhCHHHHhhCCCCCEEEECCCCcccCHHHHHHHH
Confidence            8999999999987643222224566778999999877766433  2454444

>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens}

Probab=98.33  E-value=2.3e-07  Score=88.11  Aligned_cols=102  Identities=16%  Similarity=0.056  Sum_probs=71.5

Q ss_pred             ccEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CCCC
Q psy9056         220 VKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DPFK  298 (359)
Q Consensus       220 ~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~l~  298 (359)
                      =++|+|||.|.||.++|..+...|++|+.||++++. +...           ..|             +.. .++ +.++
T Consensus       165 g~tvgIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~~~-----------~~g-------------~~~-~~l~ell~  218 (335)
T 2g76_A          165 GKTLGILGLGRIGREVATRMQSFGMKTIGYDPIISP-EVSA-----------SFG-------------VQQ-LPLEEIWP  218 (335)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSCH-HHHH-----------HTT-------------CEE-CCHHHHGG
T ss_pred             cCEEEEEeECHHHHHHHHHHHHCCCEEEEECCCcch-hhhh-----------hcC-------------cee-CCHHHHHh
Confidence            368999999999999999999999999999998754 1110           011             111 133 4578


Q ss_pred             CccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCcH--HHHHhhc
Q psy9056         299 NADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPI--TKIAAAS  347 (359)
Q Consensus       299 ~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~--~~l~~~~  347 (359)
                      +||+|+.++|.+.+...-+-++..+.++++.+|+..+++-.+  ..+.+.+
T Consensus       219 ~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~arg~vvd~~aL~~aL  269 (335)
T 2g76_A          219 LCDFITVHTPLLPSTTGLLNDNTFAQCKKGVRVVNCARGGIVDEGALLRAL  269 (335)
T ss_dssp             GCSEEEECCCCCTTTTTSBCHHHHTTSCTTEEEEECSCTTSBCHHHHHHHH
T ss_pred             cCCEEEEecCCCHHHHHhhCHHHHhhCCCCcEEEECCCccccCHHHHHHHH
Confidence            999999999987653332224566778999999877776433  3455544

>1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A*

Probab=98.32  E-value=1.5e-06  Score=81.78  Aligned_cols=116  Identities=16%  Similarity=0.198  Sum_probs=75.6

Q ss_pred             EEEEECC-CcchHHHHHHHHHCC--CeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhccccc---ccCcC
Q psy9056         222 TVAVLGA-GLMGAGIAHVTVDKG--YNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVG---TLSYD  295 (359)
Q Consensus       222 kI~IIG~-G~mG~~iA~~l~~~G--~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~---~~~~~  295 (359)
                      ||+|||+ |.+|.+++..|+..|  .+|+++|+++  .+.....+.+        ...        ..++..   +++++
T Consensus         2 KI~IiGa~G~VG~~la~~L~~~~~~~ev~L~Di~~--~~~~a~dL~~--------~~~--------~~~l~~~~~t~d~~   63 (314)
T 1mld_A            2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAH--TPGVAADLSH--------IET--------RATVKGYLGPEQLP   63 (314)
T ss_dssp             EEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSS--HHHHHHHHTT--------SSS--------SCEEEEEESGGGHH
T ss_pred             EEEEECCCChHHHHHHHHHHhCCCCcEEEEEeCCc--cHHHHHHHhc--------cCc--------CceEEEecCCCCHH
Confidence            8999998 999999999999998  6999999997  2221111111        110        013443   35674


Q ss_pred             -CCCCccEEEEccc--CCH------------HHHHHHHHHHHHhCCCCcEEEEcCCCCcHH-----H-HHhhcC-CCCcE
Q psy9056         296 -PFKNADMVIEAVF--EDI------------NIKHQVIKEIEAVVPPHCVVATNTSAIPIT-----K-IAAASK-RPDKV  353 (359)
Q Consensus       296 -~l~~aD~Vi~avp--~~~------------~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~-----~-l~~~~~-~~~rv  353 (359)
                       +++++|+||.++.  ...            .+.+++.+.+.++++ +.+|+..|+...+-     . +..... ++.|+
T Consensus        64 ~a~~~aDvVvi~ag~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p-~a~viv~sNPv~~~~~i~~~~~~~~~~~p~~rv  142 (314)
T 1mld_A           64 DCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCP-DAMICIISNPVNSTIPITAEVFKKHGVYNPNKI  142 (314)
T ss_dssp             HHHTTCSEEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCT-TSEEEECSSCHHHHHHHHHHHHHHTTCCCTTSE
T ss_pred             HHhCCCCEEEECCCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCC-CeEEEEECCCcchhHHHHHHHHHHcCCCCcceE
Confidence             6999999999873  221            567788888999874 55555555554432     2 223222 35799


Q ss_pred             Eee
Q psy9056         354 RNM  356 (359)
Q Consensus       354 ig~  356 (359)
                      +|+
T Consensus       143 ig~  145 (314)
T 1mld_A          143 FGV  145 (314)
T ss_dssp             EEC
T ss_pred             EEe
Confidence            986

>2f9y_A Acetyl-COA carboxylase, carboxyltransferase alpha; zinc ribbon, crotonase superfamily, spiral domain, ligase; 3.20A {Escherichia coli} SCOP: c.14.1.4

Probab=98.32  E-value=1.5e-07  Score=89.23  Aligned_cols=69  Identities=7%  Similarity=0.051  Sum_probs=59.8

Q ss_pred             CCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceecC
Q psy9056           2 FAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVE   81 (359)
Q Consensus         2 ~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~~   81 (359)
                      .|.|||+.++++||++||.++  ++|++      +.|.++.+.++.+..+...+.++    ..+++++|+++|+||+++|
T Consensus       222 ~a~GGGa~~~~~~D~via~p~--A~~~v------~~Peg~asil~~~~~~~~~Aae~----~~itA~~a~~~GlVd~VV~  289 (339)
T 2f9y_A          222 EGGSGGALAIGVGDKVNMLQY--STYSV------ISPEGCASILWKSADKAPLAAEA----MGIIRPRLKELKLIDSIIP  289 (339)
T ss_dssp             EEEHHHHHTTCCCSEEEECTT--CEEES------SCHHHHHHHHSSCSTTHHHHHHH----HTCSHHHHHTTTSCSCCCC
T ss_pred             CcCcHHHHHHhccCeeeecCC--CEEEe------eccchHHHHHHHhhccHHHHHHH----cCCCHHHHHHcCCeeEEec
Confidence            478999999999999999988  99997      46777777777777777788877    6799999999999999998


Q ss_pred             C
Q psy9056          82 P   82 (359)
Q Consensus        82 ~   82 (359)
                      .
T Consensus       290 e  290 (339)
T 2f9y_A          290 E  290 (339)
T ss_dssp             C
T ss_pred             C
Confidence            4

>2i99_A MU-crystallin homolog; thyroid hormine binding protein, oxidoreductase; HET: NDP; 2.60A {Homo sapiens}

Probab=98.31  E-value=3.8e-07  Score=85.79  Aligned_cols=91  Identities=11%  Similarity=0.202  Sum_probs=65.6

Q ss_pred             ccEEEEECCCcchHHHHHHHHHC-CC-eeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CC
Q psy9056         220 VKTVAVLGAGLMGAGIAHVTVDK-GY-NTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DP  296 (359)
Q Consensus       220 ~~kI~IIG~G~mG~~iA~~l~~~-G~-~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~  296 (359)
                      .++|+|||+|.||..++..+.+. |+ +|.+||+++++.+...+.+.                     ..+...++. +.
T Consensus       135 ~~~igiIG~G~~g~~~a~~l~~~~g~~~V~v~dr~~~~~~~l~~~~~---------------------~~~~~~~~~~e~  193 (312)
T 2i99_A          135 SEVLCILGAGVQAYSHYEIFTEQFSFKEVRIWNRTKENAEKFADTVQ---------------------GEVRVCSSVQEA  193 (312)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCCCSEEEEECSSHHHHHHHHHHSS---------------------SCCEECSSHHHH
T ss_pred             CcEEEEECCcHHHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHhh---------------------CCeEEeCCHHHH
Confidence            36899999999999999999886 76 89999999988776433111                     013334455 45


Q ss_pred             CCCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCC
Q psy9056         297 FKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSA  337 (359)
Q Consensus       297 l~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~  337 (359)
                      ++++|+||.|+|...    .++..  +.++++++|++.++.
T Consensus       194 v~~aDiVi~atp~~~----~v~~~--~~l~~g~~vi~~g~~  228 (312)
T 2i99_A          194 VAGADVIITVTLATE----PILFG--EWVKPGAHINAVGAS  228 (312)
T ss_dssp             HTTCSEEEECCCCSS----CCBCG--GGSCTTCEEEECCCC
T ss_pred             HhcCCEEEEEeCCCC----cccCH--HHcCCCcEEEeCCCC
Confidence            788999999999632    33332  567889988776443

>4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A*

Probab=98.31  E-value=7.7e-08  Score=91.23  Aligned_cols=104  Identities=19%  Similarity=0.203  Sum_probs=72.4

Q ss_pred             CccEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CCC
Q psy9056         219 PVKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DPF  297 (359)
Q Consensus       219 ~~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~l  297 (359)
                      .=++|||||.|.||..+|..+...|++|+.||+++...+....           .+             .... ++ +.+
T Consensus       144 ~g~tvGIIG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~-----------~g-------------~~~~-~l~ell  198 (330)
T 4e5n_A          144 DNATVGFLGMGAIGLAMADRLQGWGATLQYHEAKALDTQTEQR-----------LG-------------LRQV-ACSELF  198 (330)
T ss_dssp             TTCEEEEECCSHHHHHHHHHTTTSCCEEEEECSSCCCHHHHHH-----------HT-------------EEEC-CHHHHH
T ss_pred             CCCEEEEEeeCHHHHHHHHHHHHCCCEEEEECCCCCcHhHHHh-----------cC-------------ceeC-CHHHHH
Confidence            3479999999999999999999999999999998733222110           01             1111 33 457


Q ss_pred             CCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCcH--HHHHhhc
Q psy9056         298 KNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPI--TKIAAAS  347 (359)
Q Consensus       298 ~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~--~~l~~~~  347 (359)
                      +.||+|+.++|.+.+...-+-++..+.++++++|++.+.+-.+  ..+.+.+
T Consensus       199 ~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~arg~~vd~~aL~~aL  250 (330)
T 4e5n_A          199 ASSDFILLALPLNADTLHLVNAELLALVRPGALLVNPCRGSVVDEAAVLAAL  250 (330)
T ss_dssp             HHCSEEEECCCCSTTTTTCBCHHHHTTSCTTEEEEECSCGGGBCHHHHHHHH
T ss_pred             hhCCEEEEcCCCCHHHHHHhCHHHHhhCCCCcEEEECCCCchhCHHHHHHHH
Confidence            8899999999976554333335677788999999877765333  3555444

>1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A

Probab=98.31  E-value=1.8e-06  Score=81.59  Aligned_cols=118  Identities=17%  Similarity=0.193  Sum_probs=75.0

Q ss_pred             ccEEEEEC-CCcchHHHHHHHHHCC--CeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhccccc---ccC
Q psy9056         220 VKTVAVLG-AGLMGAGIAHVTVDKG--YNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVG---TLS  293 (359)
Q Consensus       220 ~~kI~IIG-~G~mG~~iA~~l~~~G--~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~---~~~  293 (359)
                      .+||+|+| +|.+|.+++..|+..|  ++|+++|++++  +.....+.+        ....        ..+..   +++
T Consensus         8 ~mKI~ViGAaG~VG~~la~~L~~~g~~~ev~l~Di~~~--~~~~~dL~~--------~~~~--------~~v~~~~~t~d   69 (326)
T 1smk_A            8 GFKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVNA--PGVTADISH--------MDTG--------AVVRGFLGQQQ   69 (326)
T ss_dssp             CEEEEEETTTSTTHHHHHHHHHHCTTEEEEEEEESSSH--HHHHHHHHT--------SCSS--------CEEEEEESHHH
T ss_pred             CCEEEEECCCChHHHHHHHHHHhCCCCCEEEEEeCCCc--HhHHHHhhc--------cccc--------ceEEEEeCCCC
Confidence            36899999 7999999999999999  79999999876  111111111        0000        02222   345


Q ss_pred             c-CCCCCccEEEEcccCC--------------HHHHHHHHHHHHHhCCCCcEEEEcCCCCcH------HHHHhhcC-CCC
Q psy9056         294 Y-DPFKNADMVIEAVFED--------------INIKHQVIKEIEAVVPPHCVVATNTSAIPI------TKIAAASK-RPD  351 (359)
Q Consensus       294 ~-~~l~~aD~Vi~avp~~--------------~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~------~~l~~~~~-~~~  351 (359)
                      + ++++++|+||.++...              ..+.+.+.+.+.++. ++.+|+..|+...+      +.+....+ ++.
T Consensus        70 ~~~al~gaDvVi~~ag~~~~~g~~r~dl~~~N~~~~~~i~~~i~~~~-p~~~viv~SNPv~~~~~~~t~~~~~~~~~p~~  148 (326)
T 1smk_A           70 LEAALTGMDLIIVPAGVPRKPGMTRDDLFKINAGIVKTLCEGIAKCC-PRAIVNLISNPVNSTVPIAAEVFKKAGTYDPK  148 (326)
T ss_dssp             HHHHHTTCSEEEECCCCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHC-TTSEEEECCSSHHHHHHHHHHHHHHHTCCCTT
T ss_pred             HHHHcCCCCEEEEcCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEEECCchHHHHHHHHHHHHHccCCCcc
Confidence            5 5689999999987421              156667778888887 45555555544333      11233333 357


Q ss_pred             cEEee
Q psy9056         352 KVRNM  356 (359)
Q Consensus       352 rvig~  356 (359)
                      |++|+
T Consensus       149 rviG~  153 (326)
T 1smk_A          149 RLLGV  153 (326)
T ss_dssp             SEEEC
T ss_pred             cEEEE
Confidence            89986

>2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A

Probab=98.29  E-value=2.2e-07  Score=90.01  Aligned_cols=104  Identities=13%  Similarity=0.058  Sum_probs=72.4

Q ss_pred             ccEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CCCC
Q psy9056         220 VKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DPFK  298 (359)
Q Consensus       220 ~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~l~  298 (359)
                      =++|+|||.|.||..+|..+...|.+|+.||+++...+...           +.|             +....++ +.++
T Consensus       191 gktvGIIGlG~IG~~vA~~l~a~G~~V~~~d~~~~~~~~~~-----------~~G-------------~~~~~~l~ell~  246 (393)
T 2nac_A          191 AMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHRLPESVEK-----------ELN-------------LTWHATREDMYP  246 (393)
T ss_dssp             TCEEEEECCSHHHHHHHHHHGGGTCEEEEECSSCCCHHHHH-----------HHT-------------CEECSSHHHHGG
T ss_pred             CCEEEEEeECHHHHHHHHHHHhCCCEEEEEcCCccchhhHh-----------hcC-------------ceecCCHHHHHh
Confidence            36899999999999999999999999999999864322111           001             1112233 4578


Q ss_pred             CccEEEEcccCCHHHHHHHH-HHHHHhCCCCcEEEEcCCCCcH--HHHHhhcC
Q psy9056         299 NADMVIEAVFEDINIKHQVI-KEIEAVVPPHCVVATNTSAIPI--TKIAAASK  348 (359)
Q Consensus       299 ~aD~Vi~avp~~~~~k~~v~-~~l~~~~~~~~ii~s~ts~~~~--~~l~~~~~  348 (359)
                      .||+|+.++|-+.+. +.++ ++..+.++++++|++.+.+-.+  ..+.+.+.
T Consensus       247 ~aDvV~l~~Plt~~t-~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~  298 (393)
T 2nac_A          247 VCDVVTLNCPLHPET-EHMINDETLKLFKRGAYIVNTARGKLCDRDAVARALE  298 (393)
T ss_dssp             GCSEEEECSCCCTTT-TTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHH
T ss_pred             cCCEEEEecCCchHH-HHHhhHHHHhhCCCCCEEEECCCchHhhHHHHHHHHH
Confidence            999999999976543 2334 4566678999999877776433  34655554

>1up7_A 6-phospho-beta-glucosidase; hydrolase, family4 hydrolase, Na dependent; HET: G6P NAD; 2.4A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2 PDB: 1up6_A* 1up4_A

Probab=98.29  E-value=3.6e-06  Score=82.15  Aligned_cols=119  Identities=14%  Similarity=0.079  Sum_probs=77.3

Q ss_pred             ccEEEEECCCcchHHH--HHHHHH--C---CCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhccccccc
Q psy9056         220 VKTVAVLGAGLMGAGI--AHVTVD--K---GYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTL  292 (359)
Q Consensus       220 ~~kI~IIG~G~mG~~i--A~~l~~--~---G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~  292 (359)
                      .+||+|||+|+. .+.  ...++.  .   +.+|+++|+++++++... .+.+.+.   ..          . -+++.++
T Consensus         2 ~~KI~IIGaG~v-~~~~l~~~l~~~~~~l~~~el~L~Di~~~~~~~~~-~~~~~~~---~~----------~-~~v~~t~   65 (417)
T 1up7_A            2 HMRIAVIGGGSS-YTPELVKGLLDISEDVRIDEVIFYDIDEEKQKIVV-DFVKRLV---KD----------R-FKVLISD   65 (417)
T ss_dssp             CCEEEEETTTCT-THHHHHHHHHHHTTTSCCCEEEEECSCHHHHHHHH-HHHHHHH---TT----------S-SEEEECS
T ss_pred             CCEEEEECCCHH-HHHHHHHHHHhcccCCCcCEEEEEeCCHHHHHHHH-HHHHHHh---hC----------C-eEEEEeC
Confidence            469999999985 332  234455  3   458999999999877532 2222111   10          0 2466667


Q ss_pred             Cc-CCCCCccEEEEcccCC----------------------------------HHHHHHHHHHHHHhCCCCcEEEEcCCC
Q psy9056         293 SY-DPFKNADMVIEAVFED----------------------------------INIKHQVIKEIEAVVPPHCVVATNTSA  337 (359)
Q Consensus       293 ~~-~~l~~aD~Vi~avp~~----------------------------------~~~k~~v~~~l~~~~~~~~ii~s~ts~  337 (359)
                      |+ +++++||+||+++-..                                  ..+.+++.+.+.+++  +.+++..|+.
T Consensus        66 d~~~al~~AD~Viitagvg~~~~~~rd~~i~~k~glvgqeT~G~GGi~~~~rni~i~~~i~~~i~~~~--~A~lin~TNP  143 (417)
T 1up7_A           66 TFEGAVVDAKYVIFQFRPGGLKGRENDEGIPLKYGLIGQETTGVGGFSAALRAFPIVEEYVDTVRKTS--NATIVNFTNP  143 (417)
T ss_dssp             SHHHHHTTCSEEEECCCTTHHHHHHHHHHGGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHTT--CCEEEECSSS
T ss_pred             CHHHHhCCCCEEEEcCCCCCCCccchhhhhhhhcCcccccccccchhHHhhccHHHHHHHHHHHHHHC--CEEEEEeCCh
Confidence            87 7899999999988221                                  134667788899998  6777777766


Q ss_pred             CcH-HHHHhhcCCCCcEEee
Q psy9056         338 IPI-TKIAAASKRPDKVRNM  356 (359)
Q Consensus       338 ~~~-~~l~~~~~~~~rvig~  356 (359)
                      ..+ +.......++.|++|+
T Consensus       144 vdi~t~a~~k~~p~~rviG~  163 (417)
T 1up7_A          144 SGHITEFVRNYLEYEKFIGL  163 (417)
T ss_dssp             HHHHHHHHHHTTCCSSEEEC
T ss_pred             HHHHHHHHHHhCCCCCEEEe
Confidence            554 3444444455699995

>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A*

Probab=98.28  E-value=2e-07  Score=89.02  Aligned_cols=103  Identities=15%  Similarity=0.123  Sum_probs=70.3

Q ss_pred             ccEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CCCC
Q psy9056         220 VKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DPFK  298 (359)
Q Consensus       220 ~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~l~  298 (359)
                      =++|||||.|.||..+|..+...|++|+.||++++... . .          ..|             .....++ +.++
T Consensus       168 g~tvGIIG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~-~-~----------~~g-------------~~~~~~l~ell~  222 (347)
T 1mx3_A          168 GETLGIIGLGRVGQAVALRAKAFGFNVLFYDPYLSDGV-E-R----------ALG-------------LQRVSTLQDLLF  222 (347)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTTTCEEEEECTTSCTTH-H-H----------HHT-------------CEECSSHHHHHH
T ss_pred             CCEEEEEeECHHHHHHHHHHHHCCCEEEEECCCcchhh-H-h----------hcC-------------CeecCCHHHHHh
Confidence            36899999999999999999999999999998764210 0 0          001             1112233 4568


Q ss_pred             CccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCcH--HHHHhhc
Q psy9056         299 NADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPI--TKIAAAS  347 (359)
Q Consensus       299 ~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~--~~l~~~~  347 (359)
                      .||+|+.++|.+.+...-+-++..+.++++.+|++.+.+-.+  ..+.+.+
T Consensus       223 ~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~arg~~vd~~aL~~aL  273 (347)
T 1mx3_A          223 HSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTARGGLVDEKALAQAL  273 (347)
T ss_dssp             HCSEEEECCCCCTTCTTSBSHHHHTTSCTTEEEEECSCTTSBCHHHHHHHH
T ss_pred             cCCEEEEcCCCCHHHHHHhHHHHHhcCCCCCEEEECCCChHHhHHHHHHHH
Confidence            899999999976543222225556678999999877776433  4555544

>2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A

Probab=98.27  E-value=2e-07  Score=89.57  Aligned_cols=105  Identities=18%  Similarity=0.071  Sum_probs=71.9

Q ss_pred             CccEEEEECCCcchHHHHHHHHHCCCe-eEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CC
Q psy9056         219 PVKTVAVLGAGLMGAGIAHVTVDKGYN-TIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DP  296 (359)
Q Consensus       219 ~~~kI~IIG~G~mG~~iA~~l~~~G~~-V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~  296 (359)
                      .-++|+|||.|.||..+|..+...|.+ |+.||+++...+...           +.|             +....++ +.
T Consensus       163 ~g~tvgIIG~G~IG~~vA~~l~~~G~~~V~~~d~~~~~~~~~~-----------~~g-------------~~~~~~l~el  218 (364)
T 2j6i_A          163 EGKTIATIGAGRIGYRVLERLVPFNPKELLYYDYQALPKDAEE-----------KVG-------------ARRVENIEEL  218 (364)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHGGGCCSEEEEECSSCCCHHHHH-----------HTT-------------EEECSSHHHH
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhCCCcEEEEECCCccchhHHH-----------hcC-------------cEecCCHHHH
Confidence            347999999999999999999999997 999998874333211           001             1122334 45


Q ss_pred             CCCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCc--HHHHHhhc
Q psy9056         297 FKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIP--ITKIAAAS  347 (359)
Q Consensus       297 l~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~--~~~l~~~~  347 (359)
                      ++.||+|+.++|.+.+...-+-+...+.++++.+|++.+.+-.  ...+.+.+
T Consensus       219 l~~aDvV~l~~P~t~~t~~li~~~~l~~mk~ga~lIn~arG~~vd~~aL~~aL  271 (364)
T 2j6i_A          219 VAQADIVTVNAPLHAGTKGLINKELLSKFKKGAWLVNTARGAICVAEDVAAAL  271 (364)
T ss_dssp             HHTCSEEEECCCCSTTTTTCBCHHHHTTSCTTEEEEECSCGGGBCHHHHHHHH
T ss_pred             HhcCCEEEECCCCChHHHHHhCHHHHhhCCCCCEEEECCCCchhCHHHHHHHH
Confidence            7899999999998754332222455667899999987776633  34555544

>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A*

Probab=98.24  E-value=4.1e-07  Score=86.38  Aligned_cols=101  Identities=19%  Similarity=0.129  Sum_probs=70.4

Q ss_pred             ccEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CCCC
Q psy9056         220 VKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DPFK  298 (359)
Q Consensus       220 ~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~l~  298 (359)
                      -++|+|||.|.||..+|..+...|++|+.||++++..  . .   .    .                 .....++ +.++
T Consensus       146 g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~--~-~---~----~-----------------~~~~~~l~ell~  198 (333)
T 1j4a_A          146 DQVVGVVGTGHIGQVFMQIMEGFGAKVITYDIFRNPE--L-E---K----K-----------------GYYVDSLDDLYK  198 (333)
T ss_dssp             GSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCHH--H-H---H----T-----------------TCBCSCHHHHHH
T ss_pred             CCEEEEEccCHHHHHHHHHHHHCCCEEEEECCCcchh--H-H---h----h-----------------CeecCCHHHHHh
Confidence            3689999999999999999999999999999987642  1 0   0    0                 1112233 3468


Q ss_pred             CccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCc--HHHHHhhc
Q psy9056         299 NADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIP--ITKIAAAS  347 (359)
Q Consensus       299 ~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~--~~~l~~~~  347 (359)
                      .||+|+.++|.+.+...-+-+...+.+++++++++.+.+-.  ...+.+.+
T Consensus       199 ~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lIn~arg~~vd~~aL~~aL  249 (333)
T 1j4a_A          199 QADVISLHVPDVPANVHMINDESIAKMKQDVVIVNVSRGPLVDTDAVIRGL  249 (333)
T ss_dssp             HCSEEEECSCCCGGGTTCBSHHHHHHSCTTEEEEECSCGGGBCHHHHHHHH
T ss_pred             hCCEEEEcCCCcHHHHHHHhHHHHhhCCCCcEEEECCCCcccCHHHHHHHH
Confidence            89999999997765332222445567889999987776533  34555544

>4hy3_A Phosphoglycerate oxidoreductase; PSI-biology, structural genomics, protein structure initiati acid transport and metabolism, NAD binding domain.; 2.80A {Rhizobium etli}

Probab=98.23  E-value=3.1e-07  Score=88.05  Aligned_cols=102  Identities=14%  Similarity=0.062  Sum_probs=70.4

Q ss_pred             ccEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CCCC
Q psy9056         220 VKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DPFK  298 (359)
Q Consensus       220 ~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~l~  298 (359)
                      =++|||||.|.||..+|..+...|.+|+.||++... +...           ..+             +.. .++ +.++
T Consensus       176 gktvGIIGlG~IG~~vA~~l~~fG~~V~~~d~~~~~-~~~~-----------~~g-------------~~~-~~l~ell~  229 (365)
T 4hy3_A          176 GSEIGIVGFGDLGKALRRVLSGFRARIRVFDPWLPR-SMLE-----------ENG-------------VEP-ASLEDVLT  229 (365)
T ss_dssp             SSEEEEECCSHHHHHHHHHHTTSCCEEEEECSSSCH-HHHH-----------HTT-------------CEE-CCHHHHHH
T ss_pred             CCEEEEecCCcccHHHHHhhhhCCCEEEEECCCCCH-HHHh-----------hcC-------------eee-CCHHHHHh
Confidence            369999999999999999999999999999998532 1110           011             111 233 4578


Q ss_pred             CccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCcH--HHHHhhc
Q psy9056         299 NADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPI--TKIAAAS  347 (359)
Q Consensus       299 ~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~--~~l~~~~  347 (359)
                      .||+|+.++|.+.+...-+-++..+.++++.+|++.+.|-.+  ..+.+.+
T Consensus       230 ~aDvV~l~~Plt~~T~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL  280 (365)
T 4hy3_A          230 KSDFIFVVAAVTSENKRFLGAEAFSSMRRGAAFILLSRADVVDFDALMAAV  280 (365)
T ss_dssp             SCSEEEECSCSSCC---CCCHHHHHTSCTTCEEEECSCGGGSCHHHHHHHH
T ss_pred             cCCEEEEcCcCCHHHHhhcCHHHHhcCCCCcEEEECcCCchhCHHHHHHHH
Confidence            999999999987654444446677788999999877665333  3454444

>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A

Probab=98.23  E-value=3.9e-07  Score=84.08  Aligned_cols=91  Identities=13%  Similarity=0.157  Sum_probs=64.5

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CCCCC
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DPFKN  299 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~l~~  299 (359)
                      ++|+|||+|.||.+++..+.+.|++|++||+++++.+.....+                       .+...+++ +.+++
T Consensus       130 ~~v~iiGaG~~g~aia~~L~~~g~~V~v~~r~~~~~~~l~~~~-----------------------g~~~~~~~~~~~~~  186 (275)
T 2hk9_A          130 KSILVLGAGGASRAVIYALVKEGAKVFLWNRTKEKAIKLAQKF-----------------------PLEVVNSPEEVIDK  186 (275)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHTCEEEEECSSHHHHHHHTTTS-----------------------CEEECSCGGGTGGG
T ss_pred             CEEEEECchHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHc-----------------------CCeeehhHHhhhcC
Confidence            6899999999999999999999999999999988755432100                       11222244 56789


Q ss_pred             ccEEEEcccCCHHH-HHHHHHHHHHhCCCCcEEEEcCC
Q psy9056         300 ADMVIEAVFEDINI-KHQVIKEIEAVVPPHCVVATNTS  336 (359)
Q Consensus       300 aD~Vi~avp~~~~~-k~~v~~~l~~~~~~~~ii~s~ts  336 (359)
                      +|+||.|+|..... ....+.  .+.+++++++++.+.
T Consensus       187 aDiVi~atp~~~~~~~~~~i~--~~~l~~g~~viDv~~  222 (275)
T 2hk9_A          187 VQVIVNTTSVGLKDEDPEIFN--YDLIKKDHVVVDIIY  222 (275)
T ss_dssp             CSEEEECSSTTSSTTCCCSSC--GGGCCTTSEEEESSS
T ss_pred             CCEEEEeCCCCCCCCCCCCCC--HHHcCCCCEEEEcCC
Confidence            99999999876410 001111  245778888888776

>2yq5_A D-isomer specific 2-hydroxyacid dehydrogenase; oxidoreductase; HET: NAD; 2.75A {Lactobacillus delbrueckii subsp} PDB: 2yq4_A*

Probab=98.22  E-value=3.1e-07  Score=87.38  Aligned_cols=100  Identities=16%  Similarity=0.124  Sum_probs=70.6

Q ss_pred             ccEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CCCC
Q psy9056         220 VKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DPFK  298 (359)
Q Consensus       220 ~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~l~  298 (359)
                      =++|||||.|.||.++|..+...|.+|+.||++++.  .            .+.             ..... ++ +.++
T Consensus       148 gktvgIiGlG~IG~~vA~~l~~~G~~V~~~d~~~~~--~------------~~~-------------~~~~~-~l~ell~  199 (343)
T 2yq5_A          148 NLTVGLIGVGHIGSAVAEIFSAMGAKVIAYDVAYNP--E------------FEP-------------FLTYT-DFDTVLK  199 (343)
T ss_dssp             GSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCG--G------------GTT-------------TCEEC-CHHHHHH
T ss_pred             CCeEEEEecCHHHHHHHHHHhhCCCEEEEECCChhh--h------------hhc-------------ccccc-CHHHHHh
Confidence            369999999999999999999999999999998752  0            000             01111 34 4578


Q ss_pred             CccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCcH--HHHHhhc
Q psy9056         299 NADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPI--TKIAAAS  347 (359)
Q Consensus       299 ~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~--~~l~~~~  347 (359)
                      +||+|+.++|-+.+...-+-++..+.++++++|+..+.+-.+  ..+.+.+
T Consensus       200 ~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~~vd~~aL~~aL  250 (343)
T 2yq5_A          200 EADIVSLHTPLFPSTENMIGEKQLKEMKKSAYLINCARGELVDTGALIKAL  250 (343)
T ss_dssp             HCSEEEECCCCCTTTTTCBCHHHHHHSCTTCEEEECSCGGGBCHHHHHHHH
T ss_pred             cCCEEEEcCCCCHHHHHHhhHHHHhhCCCCcEEEECCCChhhhHHHHHHHH
Confidence            999999999976554333335566678999999877665333  3454444

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=98.21  E-value=4.4e-07  Score=75.21  Aligned_cols=89  Identities=16%  Similarity=0.164  Sum_probs=63.3

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CCCCC
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DPFKN  299 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~l~~  299 (359)
                      ++|+|||+|.||..++..+...|++|++||+++++.+...+.+.                     ......++. +.+.+
T Consensus        22 ~~v~iiG~G~iG~~~a~~l~~~g~~v~v~~r~~~~~~~~a~~~~---------------------~~~~~~~~~~~~~~~   80 (144)
T 3oj0_A           22 NKILLVGNGMLASEIAPYFSYPQYKVTVAGRNIDHVRAFAEKYE---------------------YEYVLINDIDSLIKN   80 (144)
T ss_dssp             CEEEEECCSHHHHHHGGGCCTTTCEEEEEESCHHHHHHHHHHHT---------------------CEEEECSCHHHHHHT
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHHHHhC---------------------CceEeecCHHHHhcC
Confidence            69999999999999999999999999999999988765433211                     011122333 44678


Q ss_pred             ccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCC
Q psy9056         300 ADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTS  336 (359)
Q Consensus       300 aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts  336 (359)
                      +|+||.|+|....    ++.  .+.+.++.+++..+.
T Consensus        81 ~Divi~at~~~~~----~~~--~~~l~~g~~vid~~~  111 (144)
T 3oj0_A           81 NDVIITATSSKTP----IVE--ERSLMPGKLFIDLGN  111 (144)
T ss_dssp             CSEEEECSCCSSC----SBC--GGGCCTTCEEEECCS
T ss_pred             CCEEEEeCCCCCc----Eee--HHHcCCCCEEEEccC
Confidence            9999999987632    121  245677888876543

>1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A

Probab=98.20  E-value=4.4e-06  Score=79.06  Aligned_cols=122  Identities=18%  Similarity=0.132  Sum_probs=77.8

Q ss_pred             cEEEEECC-CcchHHHHHHHHHCCC-------eeEEecCC----HHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhccc
Q psy9056         221 KTVAVLGA-GLMGAGIAHVTVDKGY-------NTIVKDSF----EKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASL  288 (359)
Q Consensus       221 ~kI~IIG~-G~mG~~iA~~l~~~G~-------~V~l~d~~----~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i  288 (359)
                      +||+|+|+ |.+|.+++..++..|+       +|+++|++    +++++.....+.+..        .      .....+
T Consensus         6 ~KI~ViGaaG~VG~~l~~~L~~~~~~~~~~~~ev~l~Di~~~~~~~~~~g~~~dl~~~~--------~------~~~~~i   71 (329)
T 1b8p_A            6 MRVAVTGAAGQICYSLLFRIANGDMLGKDQPVILQLLEIPNEKAQKALQGVMMEIDDCA--------F------PLLAGM   71 (329)
T ss_dssp             EEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCSCHHHHHHHHHHHHHHHTTT--------C------TTEEEE
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCcCCCCCCEEEEEcCCCccccccchhhHHHHhhhc--------c------cccCcE
Confidence            58999998 9999999999999886       89999999    555543222222210        0      011245


Q ss_pred             ccccCc-CCCCCccEEEEcccC--------------CHHHHHHHHHHHHHhCCCCcEEEEcCCCCcH--HHHHhhc-C-C
Q psy9056         289 VGTLSY-DPFKNADMVIEAVFE--------------DINIKHQVIKEIEAVVPPHCVVATNTSAIPI--TKIAAAS-K-R  349 (359)
Q Consensus       289 ~~~~~~-~~l~~aD~Vi~avp~--------------~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~--~~l~~~~-~-~  349 (359)
                      ..+++. +++++||+||.+...              +..+.+.+.+.+.++++++.+|+..|+...+  ..+.+.. + +
T Consensus        72 ~~~~~~~~al~~aD~Vi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~p~a~ii~~SNPv~~~t~~~~~~~~~~p  151 (329)
T 1b8p_A           72 TAHADPMTAFKDADVALLVGARPRGPGMERKDLLEANAQIFTVQGKAIDAVASRNIKVLVVGNPANTNAYIAMKSAPSLP  151 (329)
T ss_dssp             EEESSHHHHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHHHHHHHTCTTSC
T ss_pred             EEecCcHHHhCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEccCchHHHHHHHHHHcCCCC
Confidence            555664 679999999987631              2245667778899987566665555554332  2333333 2 2


Q ss_pred             CCcEEee
Q psy9056         350 PDKVRNM  356 (359)
Q Consensus       350 ~~rvig~  356 (359)
                      +.|++|+
T Consensus       152 ~~~v~g~  158 (329)
T 1b8p_A          152 AKNFTAM  158 (329)
T ss_dssp             GGGEEEC
T ss_pred             HHHEEEe
Confidence            4577664

>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus}

Probab=98.19  E-value=5.9e-07  Score=84.48  Aligned_cols=99  Identities=16%  Similarity=0.198  Sum_probs=71.0

Q ss_pred             CCccEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CC
Q psy9056         218 TPVKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DP  296 (359)
Q Consensus       218 ~~~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~  296 (359)
                      ..-++|+|||.|.||..+|..+...|++|++||++++..+                              +. ..++ +.
T Consensus       142 l~g~~vgIIG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~~------------------------------~~-~~~l~el  190 (311)
T 2cuk_A          142 LQGLTLGLVGMGRIGQAVAKRALAFGMRVVYHARTPKPLP------------------------------YP-FLSLEEL  190 (311)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSSS------------------------------SC-BCCHHHH
T ss_pred             CCCCEEEEEEECHHHHHHHHHHHHCCCEEEEECCCCcccc------------------------------cc-cCCHHHH
Confidence            3346899999999999999999999999999999875311                              00 1223 34


Q ss_pred             CCCccEEEEcccCCHHHHHHHH-HHHHHhCCCCcEEEEcCCCCcH--HHHHhhcC
Q psy9056         297 FKNADMVIEAVFEDINIKHQVI-KEIEAVVPPHCVVATNTSAIPI--TKIAAASK  348 (359)
Q Consensus       297 l~~aD~Vi~avp~~~~~k~~v~-~~l~~~~~~~~ii~s~ts~~~~--~~l~~~~~  348 (359)
                      ++.||+|+.++|.+.+.. .++ ++..+.+++++++++.+++-.+  ..+.+.+.
T Consensus       191 l~~aDvV~l~~p~~~~t~-~li~~~~l~~mk~ga~lin~srg~~vd~~aL~~aL~  244 (311)
T 2cuk_A          191 LKEADVVSLHTPLTPETH-RLLNRERLFAMKRGAILLNTARGALVDTEALVEALR  244 (311)
T ss_dssp             HHHCSEEEECCCCCTTTT-TCBCHHHHTTSCTTCEEEECSCGGGBCHHHHHHHHT
T ss_pred             HhhCCEEEEeCCCChHHH-hhcCHHHHhhCCCCcEEEECCCCCccCHHHHHHHHh
Confidence            688999999999875432 233 3455678999999877776433  34666554

>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus}

Probab=98.18  E-value=1.2e-06  Score=85.31  Aligned_cols=101  Identities=15%  Similarity=0.168  Sum_probs=69.7

Q ss_pred             ccEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CCCC
Q psy9056         220 VKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DPFK  298 (359)
Q Consensus       220 ~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~l~  298 (359)
                      =++|||||.|.||..+|..+...|.+|+.||+++....                            .......++ +.++
T Consensus       156 gktvGIIGlG~IG~~vA~~l~~~G~~V~~yd~~~~~~~----------------------------~~~~~~~sl~ell~  207 (416)
T 3k5p_A          156 GKTLGIVGYGNIGSQVGNLAESLGMTVRYYDTSDKLQY----------------------------GNVKPAASLDELLK  207 (416)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECTTCCCCB----------------------------TTBEECSSHHHHHH
T ss_pred             CCEEEEEeeCHHHHHHHHHHHHCCCEEEEECCcchhcc----------------------------cCcEecCCHHHHHh
Confidence            37999999999999999999999999999998743100                            011222344 4578


Q ss_pred             CccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCcH--HHHHhhcC
Q psy9056         299 NADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPI--TKIAAASK  348 (359)
Q Consensus       299 ~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~--~~l~~~~~  348 (359)
                      .||+|+.++|...+.+.-+-++....++++.+|+..+.+-.+  ..+.+.+.
T Consensus       208 ~aDvV~lhvPlt~~T~~li~~~~l~~mk~gailIN~aRG~vvd~~aL~~aL~  259 (416)
T 3k5p_A          208 TSDVVSLHVPSSKSTSKLITEAKLRKMKKGAFLINNARGSDVDLEALAKVLQ  259 (416)
T ss_dssp             HCSEEEECCCC-----CCBCHHHHHHSCTTEEEEECSCTTSBCHHHHHHHHH
T ss_pred             hCCEEEEeCCCCHHHhhhcCHHHHhhCCCCcEEEECCCChhhhHHHHHHHHH
Confidence            999999999987764433335566678999999877765433  45655553

>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A*

Probab=98.18  E-value=8.1e-07  Score=89.49  Aligned_cols=103  Identities=21%  Similarity=0.206  Sum_probs=71.8

Q ss_pred             CCccEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CC
Q psy9056         218 TPVKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DP  296 (359)
Q Consensus       218 ~~~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~  296 (359)
                      ..-++|+|||.|.||.++|..+...|++|++||++... +.+.           +.|             +... ++ +.
T Consensus       140 l~g~~vgIIG~G~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~-----------~~g-------------~~~~-~l~e~  193 (529)
T 1ygy_A          140 IFGKTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPYVSP-ARAA-----------QLG-------------IELL-SLDDL  193 (529)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECTTSCH-HHHH-----------HHT-------------CEEC-CHHHH
T ss_pred             cCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEECCCCCh-hHHH-----------hcC-------------cEEc-CHHHH
Confidence            34479999999999999999999999999999998642 2111           011             1111 33 45


Q ss_pred             CCCccEEEEcccCCHHHHHHHHH-HHHHhCCCCcEEEEcCCCCcHH--HHHhhc
Q psy9056         297 FKNADMVIEAVFEDINIKHQVIK-EIEAVVPPHCVVATNTSAIPIT--KIAAAS  347 (359)
Q Consensus       297 l~~aD~Vi~avp~~~~~k~~v~~-~l~~~~~~~~ii~s~ts~~~~~--~l~~~~  347 (359)
                      +++||+|+.|+|.+... +.++. ++.+.++++++|++.+.+-.+.  .+.+.+
T Consensus       194 ~~~aDvV~l~~P~~~~t-~~~i~~~~~~~~k~g~ilin~arg~iv~~~aL~~al  246 (529)
T 1ygy_A          194 LARADFISVHLPKTPET-AGLIDKEALAKTKPGVIIVNAARGGLVDEAALADAI  246 (529)
T ss_dssp             HHHCSEEEECCCCSTTT-TTCBCHHHHTTSCTTEEEEECSCTTSBCHHHHHHHH
T ss_pred             HhcCCEEEECCCCchHH-HHHhCHHHHhCCCCCCEEEECCCCchhhHHHHHHHH
Confidence            78899999999977432 23443 3667789999998887765544  344544

>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A*

Probab=98.18  E-value=4.5e-07  Score=88.23  Aligned_cols=101  Identities=16%  Similarity=0.154  Sum_probs=71.6

Q ss_pred             ccEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CCCC
Q psy9056         220 VKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DPFK  298 (359)
Q Consensus       220 ~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~l~  298 (359)
                      =++|||||.|.||..+|..+...|.+|+.||+++...                .+            ......++ +.++
T Consensus       145 gktlGiIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~----------------~~------------~~~~~~~l~ell~  196 (404)
T 1sc6_A          145 GKKLGIIGYGHIGTQLGILAESLGMYVYFYDIENKLP----------------LG------------NATQVQHLSDLLN  196 (404)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCC----------------CT------------TCEECSCHHHHHH
T ss_pred             CCEEEEEeECHHHHHHHHHHHHCCCEEEEEcCCchhc----------------cC------------CceecCCHHHHHh
Confidence            3689999999999999999999999999999875310                00            11222344 4578


Q ss_pred             CccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCcH--HHHHhhcC
Q psy9056         299 NADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPI--TKIAAASK  348 (359)
Q Consensus       299 ~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~--~~l~~~~~  348 (359)
                      .||+|+.++|.+.+.+.-+-++..+.++++++++..+.+-.+  ..+.+.+.
T Consensus       197 ~aDvV~l~~P~t~~t~~li~~~~l~~mk~ga~lIN~aRg~~vd~~aL~~aL~  248 (404)
T 1sc6_A          197 MSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVVDIPALADALA  248 (404)
T ss_dssp             HCSEEEECCCSSTTTTTCBCHHHHHHSCTTEEEEECSCSSSBCHHHHHHHHH
T ss_pred             cCCEEEEccCCChHHHHHhhHHHHhhcCCCeEEEECCCChHHhHHHHHHHHH
Confidence            999999999987654332224556678999999877766433  35555543

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=98.16  E-value=1.2e-05  Score=63.24  Aligned_cols=100  Identities=21%  Similarity=0.131  Sum_probs=63.2

Q ss_pred             CccEEEEECCCcchHHHHHHHHHCC-CeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CC
Q psy9056         219 PVKTVAVLGAGLMGAGIAHVTVDKG-YNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DP  296 (359)
Q Consensus       219 ~~~kI~IIG~G~mG~~iA~~l~~~G-~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~  296 (359)
                      .+++|.|+|+|.+|..++..+.+.| ++|+++|+++++++....       ........          .+.-..++ +.
T Consensus         4 ~~~~v~I~G~G~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~~-------~~~~~~~~----------d~~~~~~~~~~   66 (118)
T 3ic5_A            4 MRWNICVVGAGKIGQMIAALLKTSSNYSVTVADHDLAALAVLNR-------MGVATKQV----------DAKDEAGLAKA   66 (118)
T ss_dssp             TCEEEEEECCSHHHHHHHHHHHHCSSEEEEEEESCHHHHHHHHT-------TTCEEEEC----------CTTCHHHHHHH
T ss_pred             CcCeEEEECCCHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHh-------CCCcEEEe----------cCCCHHHHHHH
Confidence            3579999999999999999999999 999999999987665420       00000000          00000111 23


Q ss_pred             CCCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCcH
Q psy9056         297 FKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPI  340 (359)
Q Consensus       297 l~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~  340 (359)
                      +.++|+||.|+|....  ..+.....+   .+.-++..++.+..
T Consensus        67 ~~~~d~vi~~~~~~~~--~~~~~~~~~---~g~~~~~~~~~~~~  105 (118)
T 3ic5_A           67 LGGFDAVISAAPFFLT--PIIAKAAKA---AGAHYFDLTEDVAA  105 (118)
T ss_dssp             TTTCSEEEECSCGGGH--HHHHHHHHH---TTCEEECCCSCHHH
T ss_pred             HcCCCEEEECCCchhh--HHHHHHHHH---hCCCEEEecCcHHH
Confidence            5789999999986553  355544433   34544455555443

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=98.15  E-value=1.1e-05  Score=66.47  Aligned_cols=99  Identities=10%  Similarity=0.139  Sum_probs=61.3

Q ss_pred             ccEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcCCCCC
Q psy9056         220 VKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPFKN  299 (359)
Q Consensus       220 ~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~  299 (359)
                      -++|.|+|+|.+|..++..|.+.|++|+++|+++++++.+...   ...  .-.+..+..   ..+.       ...+.+
T Consensus         7 ~~~viIiG~G~~G~~la~~L~~~g~~v~vid~~~~~~~~~~~~---g~~--~i~gd~~~~---~~l~-------~a~i~~   71 (140)
T 3fwz_A            7 CNHALLVGYGRVGSLLGEKLLASDIPLVVIETSRTRVDELRER---GVR--AVLGNAANE---EIMQ-------LAHLEC   71 (140)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHT---TCE--EEESCTTSH---HHHH-------HTTGGG
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHc---CCC--EEECCCCCH---HHHH-------hcCccc
Confidence            3689999999999999999999999999999999987764320   000  000000000   0000       013678


Q ss_pred             ccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEc
Q psy9056         300 ADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATN  334 (359)
Q Consensus       300 aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~  334 (359)
                      +|+||.++|++.... .+...+....+.-.||+-.
T Consensus        72 ad~vi~~~~~~~~n~-~~~~~a~~~~~~~~iiar~  105 (140)
T 3fwz_A           72 AKWLILTIPNGYEAG-EIVASARAKNPDIEIIARA  105 (140)
T ss_dssp             CSEEEECCSCHHHHH-HHHHHHHHHCSSSEEEEEE
T ss_pred             CCEEEEECCChHHHH-HHHHHHHHHCCCCeEEEEE
Confidence            999999999776432 2333444443433455433

>2f9y_B Acetyl-coenzyme A carboxylase carboxyl transferas beta; zinc ribbon, crotonase superfamily, spiral domain, ligase; 3.20A {Escherichia coli} SCOP: c.14.1.4

Probab=98.14  E-value=1.1e-06  Score=82.02  Aligned_cols=80  Identities=13%  Similarity=0.118  Sum_probs=68.1

Q ss_pred             CCCchH-HHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceec
Q psy9056           2 FAEPSL-ATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLV   80 (359)
Q Consensus         2 ~a~GgG-~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~   80 (359)
                      -|.||| +.++++||++||.++  ++|++.           +...+++.+|..      ++++..+++++.++|++|.++
T Consensus       201 ~~~GGg~a~~a~~~D~via~~~--A~i~v~-----------Gp~~i~~~ig~~------l~~~~~~Ae~~~~~Glvd~Vv  261 (304)
T 2f9y_B          201 PTMGGVSASFAMLGDLNIAEPK--ALIGFA-----------GPRVIEQTVREK------LPPGFQRSEFLIEKGAIDMIV  261 (304)
T ss_dssp             EEEHHHHTTGGGCCSEEEECTT--CBEESS-----------CHHHHHHHHTSC------CCTTTTBHHHHGGGTCCSEEC
T ss_pred             CCccHHHHHHHhcCCEEEEeCC--cEEEee-----------cHHHHHHHhCcc------CCcccCCHHHHHhcCCccEEe
Confidence            467888 778999999999988  999887           455677777753      568889999999999999999


Q ss_pred             CCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCc
Q psy9056          81 EPLGPGLNHPEERTMEYLEEVAVNTASQLASGK  113 (359)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~  113 (359)
                      ++             +++.+.+.+++..+...|
T Consensus       262 ~~-------------~el~~~l~~ll~~l~~~~  281 (304)
T 2f9y_B          262 RR-------------PEMRLKLASILAKLMNLP  281 (304)
T ss_dssp             CH-------------HHHHHHHHHHHHHHTTCC
T ss_pred             Cc-------------HHHHHHHHHHHHHhhcCC
Confidence            98             889999999999998754

>3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp}

Probab=98.12  E-value=4e-07  Score=87.60  Aligned_cols=99  Identities=12%  Similarity=0.135  Sum_probs=69.0

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CCCCC
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DPFKN  299 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~l~~  299 (359)
                      ++|||||.|.||..+|..+...|.+|++||+..+..+                .            .. ...++ +.+++
T Consensus       120 ktvGIIGlG~IG~~vA~~l~a~G~~V~~~d~~~~~~~----------------~------------~~-~~~sl~ell~~  170 (381)
T 3oet_A          120 RTIGIVGVGNVGSRLQTRLEALGIRTLLCDPPRAARG----------------D------------EG-DFRTLDELVQE  170 (381)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECHHHHHTT----------------C------------CS-CBCCHHHHHHH
T ss_pred             CEEEEEeECHHHHHHHHHHHHCCCEEEEECCChHHhc----------------c------------Cc-ccCCHHHHHhh
Confidence            6999999999999999999999999999997543200                0            01 12233 45789


Q ss_pred             ccEEEEcccCCHH----HHHHHHHHHHHhCCCCcEEEEcCCCCcH--HHHHhhcC
Q psy9056         300 ADMVIEAVFEDIN----IKHQVIKEIEAVVPPHCVVATNTSAIPI--TKIAAASK  348 (359)
Q Consensus       300 aD~Vi~avp~~~~----~k~~v~~~l~~~~~~~~ii~s~ts~~~~--~~l~~~~~  348 (359)
                      ||+|+.++|-+.+    ...-+-++..+.++++++|++.+.|-.+  ..+.+.+.
T Consensus       171 aDiV~l~~Plt~~g~~~T~~li~~~~l~~mk~gailIN~aRG~vvde~aL~~aL~  225 (381)
T 3oet_A          171 ADVLTFHTPLYKDGPYKTLHLADETLIRRLKPGAILINACRGPVVDNAALLARLN  225 (381)
T ss_dssp             CSEEEECCCCCCSSTTCCTTSBCHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHH
T ss_pred             CCEEEEcCcCCccccccchhhcCHHHHhcCCCCcEEEECCCCcccCHHHHHHHHH
Confidence            9999999996654    2222224556678999999877665433  45555554

>3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A*

Probab=98.09  E-value=6.5e-06  Score=77.30  Aligned_cols=119  Identities=17%  Similarity=0.190  Sum_probs=76.4

Q ss_pred             cEEEEEC-CCcchHHHHHHHHHC-C--CeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhccccc---ccC
Q psy9056         221 KTVAVLG-AGLMGAGIAHVTVDK-G--YNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVG---TLS  293 (359)
Q Consensus       221 ~kI~IIG-~G~mG~~iA~~l~~~-G--~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~---~~~  293 (359)
                      +||+||| +|.+|.+++..+... +  .+++++|+++ +++.-...+++        ...        .-.++.   +++
T Consensus         1 mKV~IiGAaG~VG~~~a~~L~~~~~~~~el~L~Di~~-~~~G~a~Dl~~--------~~~--------~~~v~~~~~~~~   63 (312)
T 3hhp_A            1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAP-VTPGVAVDLSH--------IPT--------AVKIKGFSGEDA   63 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHSCTTEEEEEECSST-THHHHHHHHHT--------SCS--------SEEEEEECSSCC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCCceEEEEecCC-CchhHHHHhhC--------CCC--------CceEEEecCCCc
Confidence            4899999 799999999999876 5  4899999987 33322222221        100        012221   245


Q ss_pred             cCCCCCccEEEEcccC--------------CHHHHHHHHHHHHHhCCCCcEEEEcCCCCcHH-HH----HhhcC--CCCc
Q psy9056         294 YDPFKNADMVIEAVFE--------------DINIKHQVIKEIEAVVPPHCVVATNTSAIPIT-KI----AAASK--RPDK  352 (359)
Q Consensus       294 ~~~l~~aD~Vi~avp~--------------~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~-~l----~~~~~--~~~r  352 (359)
                      ++++++||+||++...              +..+.+++.+.+.++++ +.+++..|+...+- .+    ....+  ++.|
T Consensus        64 ~~~~~~aDivii~ag~~rkpG~~R~dll~~N~~I~~~i~~~i~~~~p-~a~vlvvtNPvd~~t~~a~~~~k~sg~~p~~r  142 (312)
T 3hhp_A           64 TPALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQVAKTCP-KACIGIITNPVNTTVAIAAEVLKKAGVYDKNK  142 (312)
T ss_dssp             HHHHTTCSEEEECCSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHHCT-TSEEEECSSCHHHHHHHHHHHHHHTTCCCTTS
T ss_pred             HHHhCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC-CcEEEEecCcchhHHHHHHHHHHHcCCCCcce
Confidence            6789999999998732              33466677788899864 56666666554432 22    23333  4688


Q ss_pred             EEeec
Q psy9056         353 VRNMG  357 (359)
Q Consensus       353 vig~h  357 (359)
                      ++|+.
T Consensus       143 v~G~~  147 (312)
T 3hhp_A          143 LFGVT  147 (312)
T ss_dssp             EEECC
T ss_pred             EEEEe
Confidence            99864

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=98.09  E-value=1.5e-05  Score=66.70  Aligned_cols=38  Identities=29%  Similarity=0.496  Sum_probs=34.9

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHH
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLAR  258 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~  258 (359)
                      ++|.|+|+|.+|..++..|.+.|++|+++|+++++++.
T Consensus        20 ~~v~IiG~G~iG~~la~~L~~~g~~V~vid~~~~~~~~   57 (155)
T 2g1u_A           20 KYIVIFGCGRLGSLIANLASSSGHSVVVVDKNEYAFHR   57 (155)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGGGGGG
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHH
Confidence            68999999999999999999999999999999886543

>2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa}

Probab=98.08  E-value=5.5e-07  Score=86.76  Aligned_cols=99  Identities=16%  Similarity=0.175  Sum_probs=68.9

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CCCCC
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DPFKN  299 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~l~~  299 (359)
                      ++|||||.|.||.++|..+...|++|++||++++..               ..+             .. ..++ +.+++
T Consensus       117 ~tvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~---------------~~g-------------~~-~~~l~ell~~  167 (380)
T 2o4c_A          117 RTYGVVGAGQVGGRLVEVLRGLGWKVLVCDPPRQAR---------------EPD-------------GE-FVSLERLLAE  167 (380)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECHHHHHH---------------STT-------------SC-CCCHHHHHHH
T ss_pred             CEEEEEeCCHHHHHHHHHHHHCCCEEEEEcCChhhh---------------ccC-------------cc-cCCHHHHHHh
Confidence            689999999999999999999999999999765421               000             01 1233 34689


Q ss_pred             ccEEEEcccCCHH----HHHHHHHHHHHhCCCCcEEEEcCCCCc--HHHHHhhcC
Q psy9056         300 ADMVIEAVFEDIN----IKHQVIKEIEAVVPPHCVVATNTSAIP--ITKIAAASK  348 (359)
Q Consensus       300 aD~Vi~avp~~~~----~k~~v~~~l~~~~~~~~ii~s~ts~~~--~~~l~~~~~  348 (359)
                      ||+|+.++|.+.+    ...-+-++..+.++++++|+..+.+-.  ...+.+.+.
T Consensus       168 aDvV~l~~Plt~~g~~~T~~li~~~~l~~mk~gailIN~sRG~vvd~~aL~~aL~  222 (380)
T 2o4c_A          168 ADVISLHTPLNRDGEHPTRHLLDEPRLAALRPGTWLVNASRGAVVDNQALRRLLE  222 (380)
T ss_dssp             CSEEEECCCCCSSSSSCCTTSBCHHHHHTSCTTEEEEECSCGGGBCHHHHHHHHH
T ss_pred             CCEEEEeccCccccccchhhhcCHHHHhhCCCCcEEEECCCCcccCHHHHHHHHH
Confidence            9999999997664    222222456667899999987776533  345555553

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.07  E-value=2.2e-05  Score=67.37  Aligned_cols=98  Identities=13%  Similarity=0.156  Sum_probs=60.4

Q ss_pred             cEEEEECCCcchHHHHHHHHHC-CCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-C--C
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDK-GYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-D--P  296 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~-G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~--~  296 (359)
                      ++|.|+|+|.+|..++..|.+. |++|+++|+++++++.+...   ...  .-.+..+.            .+.+ +  .
T Consensus        40 ~~v~IiG~G~~G~~~a~~L~~~~g~~V~vid~~~~~~~~~~~~---g~~--~~~gd~~~------------~~~l~~~~~  102 (183)
T 3c85_A           40 AQVLILGMGRIGTGAYDELRARYGKISLGIEIREEAAQQHRSE---GRN--VISGDATD------------PDFWERILD  102 (183)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHHCSCEEEEESCHHHHHHHHHT---TCC--EEECCTTC------------HHHHHTBCS
T ss_pred             CcEEEECCCHHHHHHHHHHHhccCCeEEEEECCHHHHHHHHHC---CCC--EEEcCCCC------------HHHHHhccC
Confidence            5899999999999999999999 99999999999886654320   000  00000000            0001 2  2


Q ss_pred             CCCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCC
Q psy9056         297 FKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSA  337 (359)
Q Consensus       297 l~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~  337 (359)
                      +.++|+||.++|.+.. ...++..+.. ..++..|+..+.+
T Consensus       103 ~~~ad~vi~~~~~~~~-~~~~~~~~~~-~~~~~~ii~~~~~  141 (183)
T 3c85_A          103 TGHVKLVLLAMPHHQG-NQTALEQLQR-RNYKGQIAAIAEY  141 (183)
T ss_dssp             CCCCCEEEECCSSHHH-HHHHHHHHHH-TTCCSEEEEEESS
T ss_pred             CCCCCEEEEeCCChHH-HHHHHHHHHH-HCCCCEEEEEECC
Confidence            6789999999986543 2334444444 3444444333333

>1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1

Probab=98.05  E-value=9.4e-07  Score=83.88  Aligned_cols=102  Identities=19%  Similarity=0.184  Sum_probs=71.6

Q ss_pred             CccEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CCC
Q psy9056         219 PVKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DPF  297 (359)
Q Consensus       219 ~~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~l  297 (359)
                      .=++|+|||.|.||..+|..+...|++|+.||++++..  .            .             ..... .++ +.+
T Consensus       144 ~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~--~------------~-------------~~~~~-~~l~ell  195 (333)
T 1dxy_A          144 GQQTVGVMGTGHIGQVAIKLFKGFGAKVIAYDPYPMKG--D------------H-------------PDFDY-VSLEDLF  195 (333)
T ss_dssp             GGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSS--C------------C-------------TTCEE-CCHHHHH
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCcchh--h------------H-------------hcccc-CCHHHHH
Confidence            34689999999999999999999999999999986421  0            0             00111 133 446


Q ss_pred             CCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCC--cHHHHHhhcC
Q psy9056         298 KNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAI--PITKIAAASK  348 (359)
Q Consensus       298 ~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~--~~~~l~~~~~  348 (359)
                      +.||+|+.++|.+.+...-+-++..+.++++.+++..+.+-  ....+.+.+.
T Consensus       196 ~~aDvV~~~~P~~~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~  248 (333)
T 1dxy_A          196 KQSDVIDLHVPGIEQNTHIINEAAFNLMKPGAIVINTARPNLIDTQAMLSNLK  248 (333)
T ss_dssp             HHCSEEEECCCCCGGGTTSBCHHHHHHSCTTEEEEECSCTTSBCHHHHHHHHH
T ss_pred             hcCCEEEEcCCCchhHHHHhCHHHHhhCCCCcEEEECCCCcccCHHHHHHHHH
Confidence            88999999999877543322245566789999998777653  3345665554

>1hye_A L-lactate/malate dehydrogenase; nucleotide binding domain, oxidoreductase; HET: NAP; 1.90A {Methanocaldococcus jannaschii} SCOP: c.2.1.5 d.162.1.1 PDB: 1hyg_A*

Probab=98.02  E-value=3.5e-05  Score=72.32  Aligned_cols=122  Identities=17%  Similarity=0.210  Sum_probs=77.4

Q ss_pred             cEEEEECC-CcchHHHHHHHHHCCC--eeEEecC--CHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccC--
Q psy9056         221 KTVAVLGA-GLMGAGIAHVTVDKGY--NTIVKDS--FEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLS--  293 (359)
Q Consensus       221 ~kI~IIG~-G~mG~~iA~~l~~~G~--~V~l~d~--~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~--  293 (359)
                      +||+|+|+ |.+|.+++..++..|+  ++.++|+  ++++++.....+.+.. ..  .+.         .-.+..+++  
T Consensus         1 mKI~V~GaaG~vG~~l~~~L~~~~~~~el~L~Di~~~~~~~~~~~~dl~~~~-~~--~~~---------~~~i~~~~d~l   68 (313)
T 1hye_A            1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDAL-AG--TRS---------DANIYVESDEN   68 (313)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHHHHHHHHHHHHHHH-TT--SCC---------CCEEEEEETTC
T ss_pred             CEEEEECCCChhHHHHHHHHHhCCCCCEEEEEcCCCchhhhHHHHHHHHHhH-Hh--cCC---------CeEEEeCCcch
Confidence            38999999 9999999999998886  7999999  7765544333333211 00  000         002333333  


Q ss_pred             cCCCCCccEEEEcc--cC------------CHHHHHHHHHHHHHhCCCCcEEEEcCCCCcH--HHHHhhcC-CCCcEEee
Q psy9056         294 YDPFKNADMVIEAV--FE------------DINIKHQVIKEIEAVVPPHCVVATNTSAIPI--TKIAAASK-RPDKVRNM  356 (359)
Q Consensus       294 ~~~l~~aD~Vi~av--p~------------~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~--~~l~~~~~-~~~rvig~  356 (359)
                      +++++++|+||.+.  |.            +..+.+.+.+.+.++.  +.+|+..|+...+  ..+....+ ++.|++|+
T Consensus        69 ~~al~gaD~Vi~~Ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~--~~~vlv~SNPv~~~t~~~~k~~~~p~~rviG~  146 (313)
T 1hye_A           69 LRIIDESDVVIITSGVPRKEGMSRMDLAKTNAKIVGKYAKKIAEIC--DTKIFVITNPVDVMTYKALVDSKFERNQVFGL  146 (313)
T ss_dssp             GGGGTTCSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHC--CCEEEECSSSHHHHHHHHHHHHCCCTTSEEEC
T ss_pred             HHHhCCCCEEEECCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhC--CeEEEEecCcHHHHHHHHHHhhCcChhcEEEe
Confidence            57899999999876  21            2335567778888887  5666555554433  33334433 45799986

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=97.99  E-value=3.4e-05  Score=68.21  Aligned_cols=94  Identities=13%  Similarity=0.101  Sum_probs=60.6

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc--CCCC
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY--DPFK  298 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~l~  298 (359)
                      ++|.|+|+|.+|..++..|.+.|++|+++|+++++++.......    ...-.+..+.            ...+  ..+.
T Consensus         1 M~iiIiG~G~~G~~la~~L~~~g~~v~vid~~~~~~~~l~~~~~----~~~i~gd~~~------------~~~l~~a~i~   64 (218)
T 3l4b_C            1 MKVIIIGGETTAYYLARSMLSRKYGVVIINKDRELCEEFAKKLK----ATIIHGDGSH------------KEILRDAEVS   64 (218)
T ss_dssp             CCEEEECCHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHSS----SEEEESCTTS------------HHHHHHHTCC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHcC----CeEEEcCCCC------------HHHHHhcCcc
Confidence            37999999999999999999999999999999998765432110    0000000000            0001  1378


Q ss_pred             CccEEEEcccCCHHHHHHHHHHHHHh-CCCCcEEE
Q psy9056         299 NADMVIEAVFEDINIKHQVIKEIEAV-VPPHCVVA  332 (359)
Q Consensus       299 ~aD~Vi~avp~~~~~k~~v~~~l~~~-~~~~~ii~  332 (359)
                      ++|+||.+++++.  ....+..+.+. .+...+|+
T Consensus        65 ~ad~vi~~~~~d~--~n~~~~~~a~~~~~~~~iia   97 (218)
T 3l4b_C           65 KNDVVVILTPRDE--VNLFIAQLVMKDFGVKRVVS   97 (218)
T ss_dssp             TTCEEEECCSCHH--HHHHHHHHHHHTSCCCEEEE
T ss_pred             cCCEEEEecCCcH--HHHHHHHHHHHHcCCCeEEE
Confidence            9999999998775  33444555444 44444554

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=97.98  E-value=3.8e-05  Score=62.41  Aligned_cols=100  Identities=16%  Similarity=0.139  Sum_probs=61.0

Q ss_pred             CccEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-C-C
Q psy9056         219 PVKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-D-P  296 (359)
Q Consensus       219 ~~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~-~  296 (359)
                      ++++|.|+|+|.+|..++..+.+.|++|+++|+++++++....           .+. .     .......-...+ + .
T Consensus         5 ~~~~v~I~G~G~iG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~-----------~~~-~-----~~~~d~~~~~~l~~~~   67 (144)
T 2hmt_A            5 KNKQFAVIGLGRFGGSIVKELHRMGHEVLAVDINEEKVNAYAS-----------YAT-H-----AVIANATEENELLSLG   67 (144)
T ss_dssp             -CCSEEEECCSHHHHHHHHHHHHTTCCCEEEESCHHHHHTTTT-----------TCS-E-----EEECCTTCHHHHHTTT
T ss_pred             cCCcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH-----------hCC-E-----EEEeCCCCHHHHHhcC
Confidence            4568999999999999999999999999999999876554211           000 0     000000000011 1 2


Q ss_pred             CCCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCC
Q psy9056         297 FKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTS  336 (359)
Q Consensus       297 l~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts  336 (359)
                      +.++|+||.+++.+.+....+...... ..++.+++..++
T Consensus        68 ~~~~d~vi~~~~~~~~~~~~~~~~~~~-~~~~~ii~~~~~  106 (144)
T 2hmt_A           68 IRNFEYVIVAIGANIQASTLTTLLLKE-LDIPNIWVKAQN  106 (144)
T ss_dssp             GGGCSEEEECCCSCHHHHHHHHHHHHH-TTCSEEEEECCS
T ss_pred             CCCCCEEEECCCCchHHHHHHHHHHHH-cCCCeEEEEeCC
Confidence            578999999999874332233333333 455666654443

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=97.98  E-value=8.7e-06  Score=75.90  Aligned_cols=90  Identities=24%  Similarity=0.205  Sum_probs=63.4

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CCCCC
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DPFKN  299 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~l~~  299 (359)
                      ++|+|||+|.||..++..+...|.+|++||+++++.+....           .+.           ......++ +.+++
T Consensus       158 ~~v~IiG~G~iG~~~a~~l~~~G~~V~~~d~~~~~~~~~~~-----------~g~-----------~~~~~~~l~~~l~~  215 (300)
T 2rir_A          158 SQVAVLGLGRTGMTIARTFAALGANVKVGARSSAHLARITE-----------MGL-----------VPFHTDELKEHVKD  215 (300)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH-----------TTC-----------EEEEGGGHHHHSTT
T ss_pred             CEEEEEcccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH-----------CCC-----------eEEchhhHHHHhhC
Confidence            79999999999999999999999999999999876543211           010           00001223 45789


Q ss_pred             ccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCC
Q psy9056         300 ADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSA  337 (359)
Q Consensus       300 aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~  337 (359)
                      +|+|+.++|...-     -+...+.++++.++++.+.+
T Consensus       216 aDvVi~~~p~~~i-----~~~~~~~mk~g~~lin~a~g  248 (300)
T 2rir_A          216 IDICINTIPSMIL-----NQTVLSSMTPKTLILDLASR  248 (300)
T ss_dssp             CSEEEECCSSCCB-----CHHHHTTSCTTCEEEECSST
T ss_pred             CCEEEECCChhhh-----CHHHHHhCCCCCEEEEEeCC
Confidence            9999999996431     12234567888988876653

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=97.98  E-value=9.8e-06  Score=75.32  Aligned_cols=89  Identities=22%  Similarity=0.204  Sum_probs=62.0

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CCCCC
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DPFKN  299 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~l~~  299 (359)
                      ++|+|||+|.||..++..+...|.+|++||+++++.+....           .+.           ......++ +.+++
T Consensus       156 ~~v~IiG~G~iG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~-----------~g~-----------~~~~~~~l~~~l~~  213 (293)
T 3d4o_A          156 ANVAVLGLGRVGMSVARKFAALGAKVKVGARESDLLARIAE-----------MGM-----------EPFHISKAAQELRD  213 (293)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH-----------TTS-----------EEEEGGGHHHHTTT
T ss_pred             CEEEEEeeCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHH-----------CCC-----------eecChhhHHHHhcC
Confidence            79999999999999999999999999999999876443211           010           00001122 34789


Q ss_pred             ccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCC
Q psy9056         300 ADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTS  336 (359)
Q Consensus       300 aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts  336 (359)
                      +|+|+.++|...--     ++..+.++++.++++.+.
T Consensus       214 aDvVi~~~p~~~i~-----~~~l~~mk~~~~lin~ar  245 (293)
T 3d4o_A          214 VDVCINTIPALVVT-----ANVLAEMPSHTFVIDLAS  245 (293)
T ss_dssp             CSEEEECCSSCCBC-----HHHHHHSCTTCEEEECSS
T ss_pred             CCEEEECCChHHhC-----HHHHHhcCCCCEEEEecC
Confidence            99999999864311     123345788888887664

>1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8

Probab=97.98  E-value=2.5e-05  Score=64.38  Aligned_cols=83  Identities=19%  Similarity=0.176  Sum_probs=57.8

Q ss_pred             ccEEEEECC----CcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-
Q psy9056         220 VKTVAVLGA----GLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-  294 (359)
Q Consensus       220 ~~kI~IIG~----G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-  294 (359)
                      -++|+|||+    |.||..++..+.+.||+|+.+|++.+.+                             ..+.+..++ 
T Consensus        14 p~~IavIGaS~~~g~~G~~~~~~L~~~G~~V~~vnp~~~~i-----------------------------~G~~~~~s~~   64 (138)
T 1y81_A           14 FRKIALVGASKNPAKYGNIILKDLLSKGFEVLPVNPNYDEI-----------------------------EGLKCYRSVR   64 (138)
T ss_dssp             CCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSEE-----------------------------TTEECBSSGG
T ss_pred             CCeEEEEeecCCCCCHHHHHHHHHHHCCCEEEEeCCCCCeE-----------------------------CCeeecCCHH
Confidence            368999999    9999999999999999866666553210                             123334444 


Q ss_pred             CCCCCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEc
Q psy9056         295 DPFKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATN  334 (359)
Q Consensus       295 ~~l~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~  334 (359)
                      +..+.+|++++++|.  +...++++++.+ .+.+.+++..
T Consensus        65 el~~~vDlvii~vp~--~~v~~v~~~~~~-~g~~~i~~~~  101 (138)
T 1y81_A           65 ELPKDVDVIVFVVPP--KVGLQVAKEAVE-AGFKKLWFQP  101 (138)
T ss_dssp             GSCTTCCEEEECSCH--HHHHHHHHHHHH-TTCCEEEECT
T ss_pred             HhCCCCCEEEEEeCH--HHHHHHHHHHHH-cCCCEEEEcC
Confidence            334679999999994  446677777766 4555666533

>2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae}

Probab=97.98  E-value=1.6e-05  Score=66.15  Aligned_cols=101  Identities=20%  Similarity=0.153  Sum_probs=66.1

Q ss_pred             cEEEEECC----CcchHHHHHHHHHCCCeeEEecCCH--HHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc
Q psy9056         221 KTVAVLGA----GLMGAGIAHVTVDKGYNTIVKDSFE--KGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY  294 (359)
Q Consensus       221 ~kI~IIG~----G~mG~~iA~~l~~~G~~V~l~d~~~--~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~  294 (359)
                      ++|+|||+    |.||..++..+.+.||+|+.+|++.  +.+                             ..+.+..++
T Consensus        14 ~~IavIGas~~~g~~G~~~~~~L~~~G~~v~~vnp~~~g~~i-----------------------------~G~~~~~sl   64 (145)
T 2duw_A           14 RTIALVGASDKPDRPSYRVMKYLLDQGYHVIPVSPKVAGKTL-----------------------------LGQQGYATL   64 (145)
T ss_dssp             CCEEEESCCSCTTSHHHHHHHHHHHHTCCEEEECSSSTTSEE-----------------------------TTEECCSST
T ss_pred             CEEEEECcCCCCCChHHHHHHHHHHCCCEEEEeCCccccccc-----------------------------CCeeccCCH
Confidence            57999999    8999999999999999977766654  210                             123344455


Q ss_pred             CC-CCCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCcHHHHHhhcC-CCCcEEe
Q psy9056         295 DP-FKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPITKIAAASK-RPDKVRN  355 (359)
Q Consensus       295 ~~-l~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~-~~~rvig  355 (359)
                      ++ ...+|++++++|...  ..++++++.+. ....+++. +++. ..++.+.+. ..-+++|
T Consensus        65 ~el~~~~Dlvii~vp~~~--v~~v~~~~~~~-g~~~i~i~-~~~~-~~~l~~~a~~~Gi~~ig  122 (145)
T 2duw_A           65 ADVPEKVDMVDVFRNSEA--AWGVAQEAIAI-GAKTLWLQ-LGVI-NEQAAVLAREAGLSVVM  122 (145)
T ss_dssp             TTCSSCCSEEECCSCSTH--HHHHHHHHHHH-TCCEEECC-TTCC-CHHHHHHHHTTTCEEEC
T ss_pred             HHcCCCCCEEEEEeCHHH--HHHHHHHHHHc-CCCEEEEc-CChH-HHHHHHHHHHcCCEEEc
Confidence            33 467899999999644  56777776663 45566654 3333 344444443 3345554

>3u95_A Glycoside hydrolase, family 4; hydrolysis, cytosol; 2.00A {Thermotoga neapolitana} PDB: 1vjt_A*

Probab=97.97  E-value=1.4e-05  Score=79.36  Aligned_cols=121  Identities=12%  Similarity=0.244  Sum_probs=77.1

Q ss_pred             cEEEEECCCcchHHH--HHHHHHC------CCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhccccccc
Q psy9056         221 KTVAVLGAGLMGAGI--AHVTVDK------GYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTL  292 (359)
Q Consensus       221 ~kI~IIG~G~mG~~i--A~~l~~~------G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~  292 (359)
                      .||+|||+|+.|.+.  ...++..      +.+|+++|+++++++......++..+..   +         ..-++..++
T Consensus         1 mKI~iIGaGs~~~t~~l~~~~~~~~~l~~~~~ei~L~Di~~~rl~~~~~~~~~~~~~~---~---------~~~~i~~t~   68 (477)
T 3u95_A            1 MKISIVGAGSVRFALQLVEDIAQTDELSREDTHIYLMDVHERRLNASYILARKYVEEL---N---------SPVKVVKTE   68 (477)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTCTTTCSTTCEEEEECSCHHHHHHHHHHHHHHHHHH---T---------CCCEEEEES
T ss_pred             CEEEEECCCchhhHHHHHHHHHhhHhcCCCCCEEEEECCCHHHHHHHHHHHHHHHHHc---C---------CCeEEEEeC
Confidence            389999999988553  2333332      3479999999998876554444333211   1         001466778


Q ss_pred             Cc-CCCCCccEEEEcccC------------------------------------------------CHHHHHHHHHHHHH
Q psy9056         293 SY-DPFKNADMVIEAVFE------------------------------------------------DINIKHQVIKEIEA  323 (359)
Q Consensus       293 ~~-~~l~~aD~Vi~avp~------------------------------------------------~~~~k~~v~~~l~~  323 (359)
                      |. +++++||+||.++-.                                                +..+..++.+.+.+
T Consensus        69 d~~eAl~gAD~Vi~~~g~~~~Rvg~~~~r~~de~~~ip~k~G~~~~~l~qet~g~gG~~~~lR~~~~i~v~~~i~~~i~~  148 (477)
T 3u95_A           69 SLDEAIEGADFIINTAYPYDPRYHDSGSQRWDEVTKVGEKHGYYRGIDSQELNMVSTYTYVLSSYPDVKLALEIAEKMKK  148 (477)
T ss_dssp             CHHHHHTTCSEEEECCCCCCTTTCSSHHHHHHHHHHHHHHTTCTTCTTCBTTBCCTTSCSTTTTHHHHHHHHHHHHHHHH
T ss_pred             CHHHHhCCCCEEEECcccccccccccccccceeeeccCcccceeecccccccCCccchhHHHhhhhhHHHHHHHHHHHHh
Confidence            87 678999999988610                                                12244678888999


Q ss_pred             hCCCCcEEEEcCCCCc--HHHHHhhcCCCCcEEee
Q psy9056         324 VVPPHCVVATNTSAIP--ITKIAAASKRPDKVRNM  356 (359)
Q Consensus       324 ~~~~~~ii~s~ts~~~--~~~l~~~~~~~~rvig~  356 (359)
                      ++ |+++++..|+...  +..+....  +.+++|+
T Consensus       149 ~~-P~A~~in~tNP~~i~t~a~~~~~--~~k~vGl  180 (477)
T 3u95_A          149 MA-PKAYLMQTANPVFEITQAVRRWT--GANIIGF  180 (477)
T ss_dssp             HC-TTCEEEECSSCHHHHHHHHHHHH--CCCEEEE
T ss_pred             hC-CCeEEEEecChHHHHHHHHHHhC--CCCeEEE
Confidence            97 5787776666543  33443332  3577774

>4h7p_A Malate dehydrogenase; ssgcid, structural G seattle structural genomics center for infectious disease, oxidoreductase; 1.30A {Leishmania major}

Probab=97.95  E-value=2.7e-05  Score=73.97  Aligned_cols=109  Identities=19%  Similarity=0.153  Sum_probs=73.5

Q ss_pred             CCccEEEEECC-CcchHHHHHHHHHCCC-------eeEEecCCHHH--HHHHHHHHHHhHHHHHhhccCChHHHHhhhcc
Q psy9056         218 TPVKTVAVLGA-GLMGAGIAHVTVDKGY-------NTIVKDSFEKG--LARGLGQIKTGLDGAVKRKKMSALDRDRYLAS  287 (359)
Q Consensus       218 ~~~~kI~IIG~-G~mG~~iA~~l~~~G~-------~V~l~d~~~~~--l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  287 (359)
                      |.--||+|+|+ |.+|.+++..++....       ++.|+|+++..  ++.....+++.        ..      .....
T Consensus        22 ~~~vKVaViGAaG~IG~~la~~la~~~l~~~~~~~eL~L~Di~~~~~~~~Gva~DL~~~--------~~------~~~~~   87 (345)
T 4h7p_A           22 MSAVKVAVTGAAGQIGYALVPLIARGALLGPTTPVELRLLDIEPALKALAGVEAELEDC--------AF------PLLDK   87 (345)
T ss_dssp             CCCEEEEEESTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHT--------TC------TTEEE
T ss_pred             CCCCEEEEECcCcHHHHHHHHHHHhccccCCCCccEEEEECCCCccccchhhhhhhhhc--------Cc------cCCCc
Confidence            44459999996 9999999999998754       79999998642  23222222221        00      01123


Q ss_pred             cccccCc-CCCCCccEEEEcc--c------------CCHHHHHHHHHHHHHhCCCCcEEEEcCCCCcH
Q psy9056         288 LVGTLSY-DPFKNADMVIEAV--F------------EDINIKHQVIKEIEAVVPPHCVVATNTSAIPI  340 (359)
Q Consensus       288 i~~~~~~-~~l~~aD~Vi~av--p------------~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~  340 (359)
                      +..+++. +++++||+||++.  |            .|..+.+++.+.|.++++++++|+..++...+
T Consensus        88 ~~~~~~~~~a~~~advVvi~aG~prkpGmtR~DLl~~Na~I~~~~~~~i~~~a~~~~~vlvvsNPvd~  155 (345)
T 4h7p_A           88 VVVTADPRVAFDGVAIAIMCGAFPRKAGMERKDLLEMNARIFKEQGEAIAAVAASDCRVVVVGNPANT  155 (345)
T ss_dssp             EEEESCHHHHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHH
T ss_pred             EEEcCChHHHhCCCCEEEECCCCCCCCCCCHHHHHHHhHHHHHHHHHHHHhhccCceEEEEeCCCcch
Confidence            4444444 6799999999865  2            24557777888899998889877666665543

>1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans}

Probab=97.94  E-value=1.4e-06  Score=82.55  Aligned_cols=101  Identities=16%  Similarity=0.107  Sum_probs=69.3

Q ss_pred             CccEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CCC
Q psy9056         219 PVKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DPF  297 (359)
Q Consensus       219 ~~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~l  297 (359)
                      .-++|+|||.|.||..+|..+...|++|++||++++..  .            +.             .... .++ +.+
T Consensus       145 ~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~--~------------~~-------------~~~~-~~l~ell  196 (331)
T 1xdw_A          145 RNCTVGVVGLGRIGRVAAQIFHGMGATVIGEDVFEIKG--I------------ED-------------YCTQ-VSLDEVL  196 (331)
T ss_dssp             GGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCS--C------------TT-------------TCEE-CCHHHHH
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCccHH--H------------Hh-------------cccc-CCHHHHH
Confidence            34689999999999999999999999999999986521  0            00             0111 133 446


Q ss_pred             CCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCc--HHHHHhhc
Q psy9056         298 KNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIP--ITKIAAAS  347 (359)
Q Consensus       298 ~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~--~~~l~~~~  347 (359)
                      +.||+|+.++|.+.+...-+-++..+.++++++++..+.+-.  ...+.+.+
T Consensus       197 ~~aDvV~~~~p~t~~t~~li~~~~l~~mk~ga~lin~srg~~vd~~aL~~aL  248 (331)
T 1xdw_A          197 EKSDIITIHAPYIKENGAVVTRDFLKKMKDGAILVNCARGQLVDTEAVIEAV  248 (331)
T ss_dssp             HHCSEEEECCCCCTTTCCSBCHHHHHTSCTTEEEEECSCGGGBCHHHHHHHH
T ss_pred             hhCCEEEEecCCchHHHHHhCHHHHhhCCCCcEEEECCCcccccHHHHHHHH
Confidence            889999999997654322222445567899999887776533  34555544

>3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile}

Probab=97.93  E-value=2.2e-05  Score=73.13  Aligned_cols=97  Identities=9%  Similarity=0.085  Sum_probs=62.0

Q ss_pred             CCccEEEEECCCcchHH-HHHHHHH-CCCeeE-EecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc
Q psy9056         218 TPVKTVAVLGAGLMGAG-IAHVTVD-KGYNTI-VKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY  294 (359)
Q Consensus       218 ~~~~kI~IIG~G~mG~~-iA~~l~~-~G~~V~-l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~  294 (359)
                      |++.||+|||+|.||.. ++..+.+ .+++|+ ++|+++++++...+...                       +...+++
T Consensus         4 M~~~~igiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~~-----------------------~~~~~~~   60 (308)
T 3uuw_A            4 MKNIKMGMIGLGSIAQKAYLPILTKSERFEFVGAFTPNKVKREKICSDYR-----------------------IMPFDSI   60 (308)
T ss_dssp             -CCCEEEEECCSHHHHHHTHHHHTSCSSSEEEEEECSCHHHHHHHHHHHT-----------------------CCBCSCH
T ss_pred             cccCcEEEEecCHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHHcC-----------------------CCCcCCH
Confidence            56679999999999997 7887776 467776 89999998776433211                       1123444


Q ss_pred             -CCCCCccEEEEcccCCHHHHHHHHHHHHHhCCCCc-EEEEcCCCCcHHH
Q psy9056         295 -DPFKNADMVIEAVFEDINIKHQVIKEIEAVVPPHC-VVATNTSAIPITK  342 (359)
Q Consensus       295 -~~l~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~-ii~s~ts~~~~~~  342 (359)
                       +.++++|+|++|+|.+...  ++.....+   .+. +++--......++
T Consensus        61 ~~ll~~~D~V~i~tp~~~h~--~~~~~al~---~gk~vl~EKP~~~~~~~  105 (308)
T 3uuw_A           61 ESLAKKCDCIFLHSSTETHY--EIIKILLN---LGVHVYVDKPLASTVSQ  105 (308)
T ss_dssp             HHHHTTCSEEEECCCGGGHH--HHHHHHHH---TTCEEEECSSSSSSHHH
T ss_pred             HHHHhcCCEEEEeCCcHhHH--HHHHHHHH---CCCcEEEcCCCCCCHHH
Confidence             3356899999999988753  44444333   233 4443344445443

>2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A*

Probab=97.91  E-value=1.4e-05  Score=72.98  Aligned_cols=89  Identities=15%  Similarity=0.170  Sum_probs=62.5

Q ss_pred             EEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CCCCCc
Q psy9056         222 TVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DPFKNA  300 (359)
Q Consensus       222 kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~l~~a  300 (359)
                      +|+|||+|.||.+++..+.+.|++|+++|+++++.+...+.+.                       .. .+++ +. +++
T Consensus       118 ~v~iiG~G~~g~~~a~~l~~~g~~v~v~~r~~~~~~~l~~~~~-----------------------~~-~~~~~~~-~~~  172 (263)
T 2d5c_A          118 PALVLGAGGAGRAVAFALREAGLEVWVWNRTPQRALALAEEFG-----------------------LR-AVPLEKA-REA  172 (263)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHT-----------------------CE-ECCGGGG-GGC
T ss_pred             eEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhc-----------------------cc-hhhHhhc-cCC
Confidence            8999999999999999999999999999999987665432111                       00 1233 34 789


Q ss_pred             cEEEEcccCCHHH-HHHHHHHHHHhCCCCcEEEEcCCC
Q psy9056         301 DMVIEAVFEDINI-KHQVIKEIEAVVPPHCVVATNTSA  337 (359)
Q Consensus       301 D~Vi~avp~~~~~-k~~v~~~l~~~~~~~~ii~s~ts~  337 (359)
                      |+||.|+|..... ....+.  .+.++++.+|++.+.+
T Consensus       173 Divi~~tp~~~~~~~~~~l~--~~~l~~g~~viD~~~~  208 (263)
T 2d5c_A          173 RLLVNATRVGLEDPSASPLP--AELFPEEGAAVDLVYR  208 (263)
T ss_dssp             SEEEECSSTTTTCTTCCSSC--GGGSCSSSEEEESCCS
T ss_pred             CEEEEccCCCCCCCCCCCCC--HHHcCCCCEEEEeecC
Confidence            9999999976410 001111  3457788888776654

>3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A*

Probab=97.83  E-value=6.6e-05  Score=71.40  Aligned_cols=73  Identities=18%  Similarity=0.145  Sum_probs=54.2

Q ss_pred             CCccEEEEECCCcchHHHHHHHHHC--CCeeE-EecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc
Q psy9056         218 TPVKTVAVLGAGLMGAGIAHVTVDK--GYNTI-VKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY  294 (359)
Q Consensus       218 ~~~~kI~IIG~G~mG~~iA~~l~~~--G~~V~-l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~  294 (359)
                      +++.||+|||+|.||..++..+.+.  +++|+ ++|+++++++...+..                       .+...+|+
T Consensus        11 ~~~~rvgiiG~G~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~~~~~-----------------------~~~~~~~~   67 (354)
T 3q2i_A           11 DRKIRFALVGCGRIANNHFGALEKHADRAELIDVCDIDPAALKAAVERT-----------------------GARGHASL   67 (354)
T ss_dssp             SSCEEEEEECCSTTHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHH-----------------------CCEEESCH
T ss_pred             CCcceEEEEcCcHHHHHHHHHHHhCCCCeEEEEEEcCCHHHHHHHHHHc-----------------------CCceeCCH
Confidence            4567999999999999999999987  67755 8899998876543311                       12344555


Q ss_pred             C-CC--CCccEEEEcccCCHHH
Q psy9056         295 D-PF--KNADMVIEAVFEDINI  313 (359)
Q Consensus       295 ~-~l--~~aD~Vi~avp~~~~~  313 (359)
                      + .+  .++|+|++|+|.+...
T Consensus        68 ~~ll~~~~~D~V~i~tp~~~h~   89 (354)
T 3q2i_A           68 TDMLAQTDADIVILTTPSGLHP   89 (354)
T ss_dssp             HHHHHHCCCSEEEECSCGGGHH
T ss_pred             HHHhcCCCCCEEEECCCcHHHH
Confidence            3 34  3799999999987643

>5mdh_A Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH(D)); HET: NAD; 2.40A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 4mdh_A*

Probab=97.81  E-value=1.8e-05  Score=74.98  Aligned_cols=121  Identities=14%  Similarity=0.085  Sum_probs=77.2

Q ss_pred             cEEEEEC-CCcchHHHHHHHHHCCC--e-----eEEecCCH--HHHHHHHHHHHHhHHHHHhhccCChHHHHhhhccccc
Q psy9056         221 KTVAVLG-AGLMGAGIAHVTVDKGY--N-----TIVKDSFE--KGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVG  290 (359)
Q Consensus       221 ~kI~IIG-~G~mG~~iA~~l~~~G~--~-----V~l~d~~~--~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~  290 (359)
                      .||+|+| +|.+|.+++..++..|+  +     ++++|+++  +.++.....+++..        .      .....+..
T Consensus         4 ~kV~V~GaaG~VG~~la~~L~~~~~~~e~~~~~l~L~Di~~~~~~~~g~a~DL~~~~--------~------~~~~~~~~   69 (333)
T 5mdh_A            4 IRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCA--------L------PLLKDVIA   69 (333)
T ss_dssp             EEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTC--------C------TTEEEEEE
T ss_pred             eEEEEECCCCHHHHHHHHHHHhCCCccccCCCEEEEEeCCCccccchhhHhhhHhhh--------h------cccCCEEE
Confidence            5899999 79999999999999887  5     99999975  34443333333210        0      01123344


Q ss_pred             ccC-cCCCCCccEEEEcc--cC------------CHHHHHHHHHHHHHhCCCCcEEEEcCCCCcH--HHHHhhc-CCCCc
Q psy9056         291 TLS-YDPFKNADMVIEAV--FE------------DINIKHQVIKEIEAVVPPHCVVATNTSAIPI--TKIAAAS-KRPDK  352 (359)
Q Consensus       291 ~~~-~~~l~~aD~Vi~av--p~------------~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~--~~l~~~~-~~~~r  352 (359)
                      +++ ++++++||+||++.  |.            +..+.+.+.+.+.++.+++.+|+..|+...+  ..+.+.. ..|.+
T Consensus        70 ~~~~~~~~~daDvVvitAg~prkpG~tR~dll~~N~~i~~~i~~~i~~~~~~~~~vivvsNPvd~~t~~~~~~~~~~p~~  149 (333)
T 5mdh_A           70 TDKEEIAFKDLDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAKKSVKVIVVGNPANTNCLTASKSAPSIPKE  149 (333)
T ss_dssp             ESCHHHHTTTCSEEEECCSCCCCTTCCTTTTHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHHHHHHHTCTTSCGG
T ss_pred             cCCcHHHhCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCCchHHHHHHHHHHcCCCCcC
Confidence            443 47899999999875  21            3457778888999998777545555554333  3333434 24555


Q ss_pred             EEe
Q psy9056         353 VRN  355 (359)
Q Consensus       353 vig  355 (359)
                      ++|
T Consensus       150 ~ig  152 (333)
T 5mdh_A          150 NFS  152 (333)
T ss_dssp             GEE
T ss_pred             EEE
Confidence            454

>3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum}

Probab=97.81  E-value=6.1e-05  Score=71.29  Aligned_cols=96  Identities=16%  Similarity=0.174  Sum_probs=62.1

Q ss_pred             ccEEEEECCCcchHHHHHHHHHC-CCeeE-EecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CC
Q psy9056         220 VKTVAVLGAGLMGAGIAHVTVDK-GYNTI-VKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DP  296 (359)
Q Consensus       220 ~~kI~IIG~G~mG~~iA~~l~~~-G~~V~-l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~  296 (359)
                      +.||+|||+|.||..++..+.+. +++|+ ++|+++++++...+..                       .....+++ +.
T Consensus         4 ~~rvgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~-----------------------g~~~~~~~~~~   60 (344)
T 3euw_A            4 TLRIALFGAGRIGHVHAANIAANPDLELVVIADPFIEGAQRLAEAN-----------------------GAEAVASPDEV   60 (344)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHTT-----------------------TCEEESSHHHH
T ss_pred             ceEEEEECCcHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHc-----------------------CCceeCCHHHH
Confidence            46899999999999999999886 67766 8899998766532210                       12334555 33


Q ss_pred             CC--CccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCcHHH
Q psy9056         297 FK--NADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPITK  342 (359)
Q Consensus       297 l~--~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~  342 (359)
                      ++  ++|+|++|+|.+...  .+.....+. + ..+++--.-.....+
T Consensus        61 l~~~~~D~V~i~tp~~~h~--~~~~~al~~-g-k~v~~EKP~~~~~~~  104 (344)
T 3euw_A           61 FARDDIDGIVIGSPTSTHV--DLITRAVER-G-IPALCEKPIDLDIEM  104 (344)
T ss_dssp             TTCSCCCEEEECSCGGGHH--HHHHHHHHT-T-CCEEECSCSCSCHHH
T ss_pred             hcCCCCCEEEEeCCchhhH--HHHHHHHHc-C-CcEEEECCCCCCHHH
Confidence            55  799999999987753  444443332 1 225543333444443

>3qy9_A DHPR, dihydrodipicolinate reductase; rossmann fold, NADH, NADPH, oxidoreductase; 1.80A {Staphylococcus aureus}

Probab=97.80  E-value=7.5e-05  Score=67.48  Aligned_cols=88  Identities=16%  Similarity=0.168  Sum_probs=58.7

Q ss_pred             CCccEEEEECCCcchHHHHHHHHHCCCeeEE-ecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcCC
Q psy9056         218 TPVKTVAVLGAGLMGAGIAHVTVDKGYNTIV-KDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDP  296 (359)
Q Consensus       218 ~~~~kI~IIG~G~mG~~iA~~l~~~G~~V~l-~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  296 (359)
                      |.|.||+|+|+|.||..++..+.+.+.+++. +|++++.                .             ..+.+++|++.
T Consensus         1 M~MmkI~ViGaGrMG~~i~~~l~~~~~eLva~~d~~~~~----------------~-------------~gv~v~~dl~~   51 (243)
T 3qy9_A            1 MASMKILLIGYGAMNQRVARLAEEKGHEIVGVIENTPKA----------------T-------------TPYQQYQHIAD   51 (243)
T ss_dssp             --CCEEEEECCSHHHHHHHHHHHHTTCEEEEEECSSCC-------------------------------CCSCBCSCTTT
T ss_pred             CCceEEEEECcCHHHHHHHHHHHhCCCEEEEEEecCccc----------------c-------------CCCceeCCHHH
Confidence            4578999999999999999999998777554 7887651                0             12445667754


Q ss_pred             CCCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCcHH
Q psy9056         297 FKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPIT  341 (359)
Q Consensus       297 l~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~  341 (359)
                      +.++|+||++++  ++   .+...+.  +..+.-+++.|+|++.+
T Consensus        52 l~~~DVvIDft~--p~---a~~~~~~--l~~g~~vVigTTG~s~e   89 (243)
T 3qy9_A           52 VKGADVAIDFSN--PN---LLFPLLD--EDFHLPLVVATTGEKEK   89 (243)
T ss_dssp             CTTCSEEEECSC--HH---HHHHHHT--SCCCCCEEECCCSSHHH
T ss_pred             HhCCCEEEEeCC--hH---HHHHHHH--HhcCCceEeCCCCCCHH
Confidence            339999998774  22   2222232  56666566777888654

>1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium falciparum} SCOP: c.2.1.4 c.23.12.3

Probab=97.77  E-value=2.4e-05  Score=77.41  Aligned_cols=96  Identities=15%  Similarity=0.169  Sum_probs=66.6

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CCCCC
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DPFKN  299 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~l~~  299 (359)
                      ++|+|||.|.||.++|..+...|.+|++||+++.....+.           ..+             +.. .++ +.++.
T Consensus       258 ktVgIIG~G~IG~~vA~~l~~~G~~Viv~d~~~~~~~~a~-----------~~g-------------~~~-~~l~ell~~  312 (479)
T 1v8b_A          258 KIVVICGYGDVGKGCASSMKGLGARVYITEIDPICAIQAV-----------MEG-------------FNV-VTLDEIVDK  312 (479)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHTCEEEEECSCHHHHHHHH-----------TTT-------------CEE-CCHHHHTTT
T ss_pred             CEEEEEeeCHHHHHHHHHHHhCcCEEEEEeCChhhHHHHH-----------HcC-------------CEe-cCHHHHHhc
Confidence            7999999999999999999999999999999987532211           111             111 233 45889


Q ss_pred             ccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCC---CcHHHHHh
Q psy9056         300 ADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSA---IPITKIAA  345 (359)
Q Consensus       300 aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~---~~~~~l~~  345 (359)
                      +|+|+.++. ...+   +-++..+.++++++|+..+.+   +....+.+
T Consensus       313 aDiVi~~~~-t~~l---I~~~~l~~MK~gailiNvgrg~~EId~~aL~~  357 (479)
T 1v8b_A          313 GDFFITCTG-NVDV---IKLEHLLKMKNNAVVGNIGHFDDEIQVNELFN  357 (479)
T ss_dssp             CSEEEECCS-SSSS---BCHHHHTTCCTTCEEEECSSTTTSBCHHHHHT
T ss_pred             CCEEEECCC-hhhh---cCHHHHhhcCCCcEEEEeCCCCccccchhhhc
Confidence            999999962 2211   113445568999999877765   34445555

>3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydro NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei} PDB: 3glq_A*

Probab=97.77  E-value=2.7e-05  Score=77.26  Aligned_cols=88  Identities=15%  Similarity=0.111  Sum_probs=62.8

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CCCCC
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DPFKN  299 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~l~~  299 (359)
                      ++|+|||.|.+|..+|..+...|.+|++||+++.......           ..+             ... .++ +.++.
T Consensus       278 ktVgIIG~G~IG~~vA~~l~~~G~~V~v~d~~~~~~~~a~-----------~~G-------------~~~-~~l~ell~~  332 (494)
T 3d64_A          278 KIAVVAGYGDVGKGCAQSLRGLGATVWVTEIDPICALQAA-----------MEG-------------YRV-VTMEYAADK  332 (494)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEECSCHHHHHHHH-----------TTT-------------CEE-CCHHHHTTT
T ss_pred             CEEEEEccCHHHHHHHHHHHHCCCEEEEEeCChHhHHHHH-----------HcC-------------CEe-CCHHHHHhc
Confidence            7999999999999999999999999999999987532211           001             111 133 45889


Q ss_pred             ccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCC
Q psy9056         300 ADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSA  337 (359)
Q Consensus       300 aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~  337 (359)
                      +|+|+.++. ...+   +-++..+.++++++|+..+.+
T Consensus       333 aDiVi~~~~-t~~l---I~~~~l~~MK~gAilINvgrg  366 (494)
T 3d64_A          333 ADIFVTATG-NYHV---INHDHMKAMRHNAIVCNIGHF  366 (494)
T ss_dssp             CSEEEECSS-SSCS---BCHHHHHHCCTTEEEEECSSS
T ss_pred             CCEEEECCC-cccc---cCHHHHhhCCCCcEEEEcCCC
Confidence            999999983 2211   113455568999999877665

>3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2}

Probab=97.76  E-value=8e-05  Score=70.81  Aligned_cols=95  Identities=15%  Similarity=0.155  Sum_probs=61.9

Q ss_pred             ccEEEEECCCcchHHHHHHHHHC-CCeeE-EecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CC
Q psy9056         220 VKTVAVLGAGLMGAGIAHVTVDK-GYNTI-VKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DP  296 (359)
Q Consensus       220 ~~kI~IIG~G~mG~~iA~~l~~~-G~~V~-l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~  296 (359)
                      ..||+|||+|.||..++..+.+. +++|+ ++|+++++++...+..                       .+...+++ +.
T Consensus         5 ~~~vgiiG~G~~g~~~~~~l~~~~~~~lvav~d~~~~~~~~~~~~~-----------------------g~~~~~~~~~~   61 (354)
T 3db2_A            5 PVGVAAIGLGRWAYVMADAYTKSEKLKLVTCYSRTEDKREKFGKRY-----------------------NCAGDATMEAL   61 (354)
T ss_dssp             CEEEEEECCSHHHHHHHHHHTTCSSEEEEEEECSSHHHHHHHHHHH-----------------------TCCCCSSHHHH
T ss_pred             cceEEEEccCHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHc-----------------------CCCCcCCHHHH
Confidence            35899999999999999999887 77854 8899998876543311                       12223444 33


Q ss_pred             C--CCccEEEEcccCCHHHHHHHHHHHHHhCCCCc-EEEEcCCCCcHHH
Q psy9056         297 F--KNADMVIEAVFEDINIKHQVIKEIEAVVPPHC-VVATNTSAIPITK  342 (359)
Q Consensus       297 l--~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~-ii~s~ts~~~~~~  342 (359)
                      +  .++|+|++|+|.....  .+.....+   .+. +++--.-....++
T Consensus        62 l~~~~~D~V~i~tp~~~h~--~~~~~al~---~gk~vl~EKP~~~~~~~  105 (354)
T 3db2_A           62 LAREDVEMVIITVPNDKHA--EVIEQCAR---SGKHIYVEKPISVSLDH  105 (354)
T ss_dssp             HHCSSCCEEEECSCTTSHH--HHHHHHHH---TTCEEEEESSSCSSHHH
T ss_pred             hcCCCCCEEEEeCChHHHH--HHHHHHHH---cCCEEEEccCCCCCHHH
Confidence            4  5799999999987753  43333333   233 5544444454443

>1x7d_A Ornithine cyclodeaminase; binds NAD+, binds L-ornithine, binds L-proline, 2 bundle, beta barrel, rossmann fold, lyase; HET: NAD ORN MES; 1.60A {Pseudomonas putida} SCOP: c.2.1.13 PDB: 1u7h_A*

Probab=97.75  E-value=1.9e-05  Score=75.40  Aligned_cols=97  Identities=12%  Similarity=0.116  Sum_probs=65.0

Q ss_pred             ccEEEEECCCcchHHHHHHHHH--CCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CC
Q psy9056         220 VKTVAVLGAGLMGAGIAHVTVD--KGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DP  296 (359)
Q Consensus       220 ~~kI~IIG~G~mG~~iA~~l~~--~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~  296 (359)
                      .++|+|||+|.||..++..+..  ...+|.+||+++++.++..+.+...      .+.           .+...++. +.
T Consensus       129 ~~~v~iIGaG~~a~~~a~al~~~~~~~~V~V~~r~~~~a~~la~~~~~~------~g~-----------~~~~~~~~~ea  191 (350)
T 1x7d_A          129 ARKMALIGNGAQSEFQALAFHKHLGIEEIVAYDTDPLATAKLIANLKEY------SGL-----------TIRRASSVAEA  191 (350)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHTTC------TTC-----------EEEECSSHHHH
T ss_pred             CCeEEEECCcHHHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHhc------cCc-----------eEEEeCCHHHH
Confidence            3689999999999999987754  3468999999999887765433210      010           12233444 45


Q ss_pred             CCCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCC
Q psy9056         297 FKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSA  337 (359)
Q Consensus       297 l~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~  337 (359)
                      ++++|+||.|+|...  ...++.  .+.+++++.|...++.
T Consensus       192 v~~aDiVi~aTps~~--~~pvl~--~~~l~~G~~V~~vgs~  228 (350)
T 1x7d_A          192 VKGVDIITTVTADKA--YATIIT--PDMLEPGMHLNAVGGD  228 (350)
T ss_dssp             HTTCSEEEECCCCSS--EEEEEC--GGGCCTTCEEEECSCC
T ss_pred             HhcCCEEEEeccCCC--CCceec--HHHcCCCCEEEECCCC
Confidence            789999999999762  112221  2467888988766553

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=97.75  E-value=0.00015  Score=60.21  Aligned_cols=39  Identities=15%  Similarity=0.239  Sum_probs=34.0

Q ss_pred             ccEEEEECCCcchHHHHHHHHHCCCeeEEecCC-HHHHHH
Q psy9056         220 VKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSF-EKGLAR  258 (359)
Q Consensus       220 ~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~-~~~l~~  258 (359)
                      -++|.|+|+|.+|..++..|.+.|++|+++|++ +++.+.
T Consensus         3 ~~~vlI~G~G~vG~~la~~L~~~g~~V~vid~~~~~~~~~   42 (153)
T 1id1_A            3 KDHFIVCGHSILAINTILQLNQRGQNVTVISNLPEDDIKQ   42 (153)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTCCEEEEECCCHHHHHH
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEECCChHHHHH
Confidence            368999999999999999999999999999998 454443

>3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis}

Probab=97.74  E-value=7.2e-05  Score=70.46  Aligned_cols=99  Identities=6%  Similarity=-0.000  Sum_probs=62.3

Q ss_pred             CCccEEEEECCCcchHHHHHHHHHC-CCeeE-EecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcC
Q psy9056         218 TPVKTVAVLGAGLMGAGIAHVTVDK-GYNTI-VKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYD  295 (359)
Q Consensus       218 ~~~~kI~IIG~G~mG~~iA~~l~~~-G~~V~-l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~  295 (359)
                      |++.||+|||+|.||..++..+.+. +++|+ ++|+++++++...+..          +            -....+|++
T Consensus         3 m~~~~igiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~----------~------------~~~~~~~~~   60 (330)
T 3e9m_A            3 LDKIRYGIMSTAQIVPRFVAGLRESAQAEVRGIASRRLENAQKMAKEL----------A------------IPVAYGSYE   60 (330)
T ss_dssp             CCCEEEEECSCCTTHHHHHHHHHHSSSEEEEEEBCSSSHHHHHHHHHT----------T------------CCCCBSSHH
T ss_pred             CCeEEEEEECchHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHHHc----------C------------CCceeCCHH
Confidence            3456999999999999999999885 66766 7899998766543211          0            012344553


Q ss_pred             -CC--CCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCcHHH
Q psy9056         296 -PF--KNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPITK  342 (359)
Q Consensus       296 -~l--~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~  342 (359)
                       .+  .++|+|++|+|.+...  ++.....+. + .-+++--.-....++
T Consensus        61 ~ll~~~~~D~V~i~tp~~~h~--~~~~~al~~-g-k~vl~EKP~~~~~~e  106 (330)
T 3e9m_A           61 ELCKDETIDIIYIPTYNQGHY--SAAKLALSQ-G-KPVLLEKPFTLNAAE  106 (330)
T ss_dssp             HHHHCTTCSEEEECCCGGGHH--HHHHHHHHT-T-CCEEECSSCCSSHHH
T ss_pred             HHhcCCCCCEEEEcCCCHHHH--HHHHHHHHC-C-CeEEEeCCCCCCHHH
Confidence             33  3799999999988753  444433332 1 125543333444443

>7mdh_A Protein (malate dehydrogenase); chloroplastic malate dehydrogenase (NADP+), activated by LIG chloroplastic malate dehydrogenase; 2.40A {Sorghum bicolor} SCOP: c.2.1.5 d.162.1.1 PDB: 1civ_A*

Probab=97.72  E-value=8e-05  Score=71.39  Aligned_cols=122  Identities=16%  Similarity=0.099  Sum_probs=75.6

Q ss_pred             cEEEEEC-CCcchHHHHHHHHHCCC--e---eEEecCCH----HHHHHHHHHHHHhHHHHHhhccCChHHHHhhhccccc
Q psy9056         221 KTVAVLG-AGLMGAGIAHVTVDKGY--N---TIVKDSFE----KGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVG  290 (359)
Q Consensus       221 ~kI~IIG-~G~mG~~iA~~l~~~G~--~---V~l~d~~~----~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~  290 (359)
                      .||+|+| +|.+|.+++..++..+.  +   |.++|.+.    ++++.....+++...              .....+.+
T Consensus        33 ~KV~ViGAaG~VG~~la~~l~~~~l~~e~~~l~L~d~d~~~~~~~~~G~amDL~h~~~--------------p~~~~v~i   98 (375)
T 7mdh_A           33 VNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDSLY--------------PLLREVSI   98 (375)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTC--------------TTEEEEEE
T ss_pred             CEEEEECCCChHHHHHHHHHHcCCcCCCCceeEEEecCccchhhhhHHHHHhHHhhhh--------------hhcCCcEE
Confidence            6999999 79999999999999876  2   77765543    333333333332110              01112333


Q ss_pred             c-cCcCCCCCccEEEEcc--cC------------CHHHHHHHHHHHHHhCCCCcEEEEcCCCCcHH-HH-HhhcC-CCCc
Q psy9056         291 T-LSYDPFKNADMVIEAV--FE------------DINIKHQVIKEIEAVVPPHCVVATNTSAIPIT-KI-AAASK-RPDK  352 (359)
Q Consensus       291 ~-~~~~~l~~aD~Vi~av--p~------------~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~-~l-~~~~~-~~~r  352 (359)
                      + .+++++++||+||++.  |-            +..+.+.+.+.|.++..++.+|+..++...+- .+ ....+ .|.|
T Consensus        99 ~~~~y~~~~daDvVVitag~prkpG~tR~DLl~~N~~I~k~i~~~i~~~a~p~~ivlVvsNPvD~~t~ia~k~sg~~~~r  178 (375)
T 7mdh_A           99 GIDPYEVFEDVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVGNPCNTNALICLKNAPDIPAK  178 (375)
T ss_dssp             ESCHHHHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHHHHHHHTCTTSCGG
T ss_pred             ecCCHHHhCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHcCCCCcc
Confidence            3 4568899999999865  21            33466677777888866788877777665442 22 23232 3456


Q ss_pred             EEee
Q psy9056         353 VRNM  356 (359)
Q Consensus       353 vig~  356 (359)
                      ++|.
T Consensus       179 vig~  182 (375)
T 7mdh_A          179 NFHA  182 (375)
T ss_dssp             GEEE
T ss_pred             EEEe
Confidence            6653

>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*

Probab=97.71  E-value=4.2e-05  Score=76.04  Aligned_cols=88  Identities=18%  Similarity=0.151  Sum_probs=63.0

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CCCCC
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DPFKN  299 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~l~~  299 (359)
                      ++|+|+|+|.+|..+|..+...|.+|+++|+++.+++.+..           .|.             .. .++ +.+.+
T Consensus       275 ktV~IiG~G~IG~~~A~~lka~Ga~Viv~d~~~~~~~~A~~-----------~Ga-------------~~-~~l~e~l~~  329 (494)
T 3ce6_A          275 KKVLICGYGDVGKGCAEAMKGQGARVSVTEIDPINALQAMM-----------EGF-------------DV-VTVEEAIGD  329 (494)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHH-----------TTC-------------EE-CCHHHHGGG
T ss_pred             CEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH-----------cCC-------------EE-ecHHHHHhC
Confidence            78999999999999999999999999999999987655422           110             00 111 34678


Q ss_pred             ccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCC
Q psy9056         300 ADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSA  337 (359)
Q Consensus       300 aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~  337 (359)
                      +|+||++++...-+.    .+..+.++++.+|+..+.+
T Consensus       330 aDvVi~atgt~~~i~----~~~l~~mk~ggilvnvG~~  363 (494)
T 3ce6_A          330 ADIVVTATGNKDIIM----LEHIKAMKDHAILGNIGHF  363 (494)
T ss_dssp             CSEEEECSSSSCSBC----HHHHHHSCTTCEEEECSSS
T ss_pred             CCEEEECCCCHHHHH----HHHHHhcCCCcEEEEeCCC
Confidence            999999987544221    2344557888888766543

>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A*

Probab=97.70  E-value=3.1e-05  Score=75.42  Aligned_cols=96  Identities=20%  Similarity=0.140  Sum_probs=65.2

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CCCCC
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DPFKN  299 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~l~~  299 (359)
                      ++|+|+|.|.+|.++|..+...|.+|+++|+++.....+..           .             .... .++ +.++.
T Consensus       212 ktVgIiG~G~IG~~vA~~Lka~Ga~Viv~D~~p~~a~~A~~-----------~-------------G~~~-~sL~eal~~  266 (436)
T 3h9u_A          212 KTACVCGYGDVGKGCAAALRGFGARVVVTEVDPINALQAAM-----------E-------------GYQV-LLVEDVVEE  266 (436)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHH-----------T-------------TCEE-CCHHHHTTT
T ss_pred             CEEEEEeeCHHHHHHHHHHHHCCCEEEEECCChhhhHHHHH-----------h-------------CCee-cCHHHHHhh
Confidence            79999999999999999999999999999999876443211           0             1111 233 56889


Q ss_pred             ccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCC---CcHHHHHh
Q psy9056         300 ADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSA---IPITKIAA  345 (359)
Q Consensus       300 aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~---~~~~~l~~  345 (359)
                      +|+|+.+.....-+    -.+..+.++++.+|+..+.+   +.+..+..
T Consensus       267 ADVVilt~gt~~iI----~~e~l~~MK~gAIVINvgRg~vEID~~~L~~  311 (436)
T 3h9u_A          267 AHIFVTTTGNDDII----TSEHFPRMRDDAIVCNIGHFDTEIQVAWLKA  311 (436)
T ss_dssp             CSEEEECSSCSCSB----CTTTGGGCCTTEEEEECSSSGGGBCHHHHHH
T ss_pred             CCEEEECCCCcCcc----CHHHHhhcCCCcEEEEeCCCCCccCHHHHHh
Confidence            99999865422211    12345567899998876644   33444443

>3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A*

Probab=97.67  E-value=0.0001  Score=70.00  Aligned_cols=74  Identities=9%  Similarity=-0.027  Sum_probs=51.8

Q ss_pred             CCCccEEEEECCCcchH-HHHHHHHHC-CCeeE-EecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccC
Q psy9056         217 QTPVKTVAVLGAGLMGA-GIAHVTVDK-GYNTI-VKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLS  293 (359)
Q Consensus       217 ~~~~~kI~IIG~G~mG~-~iA~~l~~~-G~~V~-l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~  293 (359)
                      +|+..||+|||+|.||. .++..+.+. +++|+ ++|+++++.+...+..                       .+...++
T Consensus        24 ~m~~~rigiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~-----------------------g~~~~~~   80 (350)
T 3rc1_A           24 NANPIRVGVIGCADIAWRRALPALEAEPLTEVTAIASRRWDRAKRFTERF-----------------------GGEPVEG   80 (350)
T ss_dssp             --CCEEEEEESCCHHHHHTHHHHHHHCTTEEEEEEEESSHHHHHHHHHHH-----------------------CSEEEES
T ss_pred             CCCceEEEEEcCcHHHHHHHHHHHHhCCCeEEEEEEcCCHHHHHHHHHHc-----------------------CCCCcCC
Confidence            35567899999999998 788888887 67765 8899998766543311                       1222345


Q ss_pred             cC-CC--CCccEEEEcccCCHHH
Q psy9056         294 YD-PF--KNADMVIEAVFEDINI  313 (359)
Q Consensus       294 ~~-~l--~~aD~Vi~avp~~~~~  313 (359)
                      ++ .+  .+.|+|++|+|.+...
T Consensus        81 ~~~ll~~~~~D~V~i~tp~~~h~  103 (350)
T 3rc1_A           81 YPALLERDDVDAVYVPLPAVLHA  103 (350)
T ss_dssp             HHHHHTCTTCSEEEECCCGGGHH
T ss_pred             HHHHhcCCCCCEEEECCCcHHHH
Confidence            53 33  3689999999988753

>3kb6_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; HET: MSE NAD 1PE; 2.12A {Aquifex aeolicus}

Probab=97.65  E-value=2.4e-05  Score=74.20  Aligned_cols=102  Identities=16%  Similarity=0.213  Sum_probs=69.8

Q ss_pred             ccEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CCCC
Q psy9056         220 VKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DPFK  298 (359)
Q Consensus       220 ~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~l~  298 (359)
                      -++|||||.|.+|..+|..+..-|.+|+.||+.......             +.             ... ..++ +.++
T Consensus       141 g~tvGIiG~G~IG~~va~~~~~fg~~v~~~d~~~~~~~~-------------~~-------------~~~-~~~l~ell~  193 (334)
T 3kb6_A          141 RLTLGVIGTGRIGSRVAMYGLAFGMKVLCYDVVKREDLK-------------EK-------------GCV-YTSLDELLK  193 (334)
T ss_dssp             GSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCHHHH-------------HT-------------TCE-ECCHHHHHH
T ss_pred             CcEEEEECcchHHHHHHHhhcccCceeeecCCccchhhh-------------hc-------------Cce-ecCHHHHHh
Confidence            468999999999999999999999999999987542110             00             111 1233 4578


Q ss_pred             CccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCC--CcHHHHHhhcC
Q psy9056         299 NADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSA--IPITKIAAASK  348 (359)
Q Consensus       299 ~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~--~~~~~l~~~~~  348 (359)
                      .||+|+.++|-+.+.+.-+=++..+.++++.+++..+-|  +.-..+.+.+.
T Consensus       194 ~sDivslh~Plt~~T~~li~~~~l~~mk~~a~lIN~aRG~iVde~aL~~aL~  245 (334)
T 3kb6_A          194 ESDVISLHVPYTKETHHMINEERISLMKDGVYLINTARGKVVDTDALYRAYQ  245 (334)
T ss_dssp             HCSEEEECCCCCTTTTTCBCHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHH
T ss_pred             hCCEEEEcCCCChhhccCcCHHHHhhcCCCeEEEecCccccccHHHHHHHHH
Confidence            999999999977654332324455678999988765544  22345555553

>2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A {Archaeoglobus fulgidus}

Probab=97.64  E-value=5e-05  Score=68.08  Aligned_cols=78  Identities=14%  Similarity=0.214  Sum_probs=53.4

Q ss_pred             EEEEECCCcchHHHHHHHHHCCCee-EEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CCC-C
Q psy9056         222 TVAVLGAGLMGAGIAHVTVDKGYNT-IVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DPF-K  298 (359)
Q Consensus       222 kI~IIG~G~mG~~iA~~l~~~G~~V-~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~l-~  298 (359)
                      ||+|||+|.||..++..+.+.|++| .+||+++. .+.                               ..+++ +.+ .
T Consensus         2 ~vgiIG~G~mG~~~~~~l~~~g~~lv~v~d~~~~-~~~-------------------------------~~~~~~~l~~~   49 (236)
T 2dc1_A            2 LVGLIGYGAIGKFLAEWLERNGFEIAAILDVRGE-HEK-------------------------------MVRGIDEFLQR   49 (236)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEECSSCC-CTT-------------------------------EESSHHHHTTS
T ss_pred             EEEEECCCHHHHHHHHHHhcCCCEEEEEEecCcc-hhh-------------------------------hcCCHHHHhcC
Confidence            7999999999999999999999997 79998852 110                               12233 234 6


Q ss_pred             CccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCC
Q psy9056         299 NADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTS  336 (359)
Q Consensus       299 ~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts  336 (359)
                      ++|+|++|+|.+.. . ++...   .+..++.+++.++
T Consensus        50 ~~DvVv~~~~~~~~-~-~~~~~---~l~~G~~vv~~~~   82 (236)
T 2dc1_A           50 EMDVAVEAASQQAV-K-DYAEK---ILKAGIDLIVLST   82 (236)
T ss_dssp             CCSEEEECSCHHHH-H-HHHHH---HHHTTCEEEESCG
T ss_pred             CCCEEEECCCHHHH-H-HHHHH---HHHCCCcEEEECc
Confidence            89999999986532 2 33332   3345666665554

>1omo_A Alanine dehydrogenase; two-domain, beta-sandwich-dimer, rossmann-fold NAD domain, human MU crystallin homolog; HET: NAD; 2.32A {Archaeoglobus fulgidus} SCOP: c.2.1.13 PDB: 1vll_A

Probab=97.64  E-value=7.3e-05  Score=70.42  Aligned_cols=91  Identities=11%  Similarity=0.008  Sum_probs=64.1

Q ss_pred             ccEEEEECCCcchHHHHHHHHHC--CCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CC
Q psy9056         220 VKTVAVLGAGLMGAGIAHVTVDK--GYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DP  296 (359)
Q Consensus       220 ~~kI~IIG~G~mG~~iA~~l~~~--G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~  296 (359)
                      -++|+|||+|.+|..++..+...  ..+|.+||+++++.++..+.+...       + +          .+. .+++ +.
T Consensus       125 ~~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r~~~~a~~la~~~~~~-------~-~----------~~~-~~~~~e~  185 (322)
T 1omo_A          125 SSVFGFIGCGTQAYFQLEALRRVFDIGEVKAYDVREKAAKKFVSYCEDR-------G-I----------SAS-VQPAEEA  185 (322)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHHHT-------T-C----------CEE-ECCHHHH
T ss_pred             CCEEEEEcCcHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhc-------C-c----------eEE-ECCHHHH
Confidence            36999999999999999988873  468999999999988765543310       0 0          122 3444 45


Q ss_pred             CCCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCC
Q psy9056         297 FKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTS  336 (359)
Q Consensus       297 l~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts  336 (359)
                      + ++|+|+.|+|...    .++.  .+.+++++.|...++
T Consensus       186 v-~aDvVi~aTp~~~----pv~~--~~~l~~G~~V~~ig~  218 (322)
T 1omo_A          186 S-RCDVLVTTTPSRK----PVVK--AEWVEEGTHINAIGA  218 (322)
T ss_dssp             T-SSSEEEECCCCSS----CCBC--GGGCCTTCEEEECSC
T ss_pred             h-CCCEEEEeeCCCC----ceec--HHHcCCCeEEEECCC
Confidence            7 8999999999754    2222  246788888876643

>4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti}

Probab=97.62  E-value=0.00013  Score=68.69  Aligned_cols=94  Identities=15%  Similarity=0.170  Sum_probs=60.8

Q ss_pred             ccEEEEECCCcchHHHHHHHHHC-CCeeE-EecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CC
Q psy9056         220 VKTVAVLGAGLMGAGIAHVTVDK-GYNTI-VKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DP  296 (359)
Q Consensus       220 ~~kI~IIG~G~mG~~iA~~l~~~-G~~V~-l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~  296 (359)
                      +.||+|||+|.||..++..+.+. +++|+ ++|+++++++...+..                       .+. .+++ +.
T Consensus         3 ~~~vgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~-----------------------~~~-~~~~~~~   58 (331)
T 4hkt_A            3 TVRFGLLGAGRIGKVHAKAVSGNADARLVAVADAFPAAAEAIAGAY-----------------------GCE-VRTIDAI   58 (331)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHT-----------------------TCE-ECCHHHH
T ss_pred             ceEEEEECCCHHHHHHHHHHhhCCCcEEEEEECCCHHHHHHHHHHh-----------------------CCC-cCCHHHH
Confidence            35899999999999999999886 77766 7999998766543211                       112 3344 23


Q ss_pred             CC--CccEEEEcccCCHHHHHHHHHHHHHhCCCCc-EEEEcCCCCcHHH
Q psy9056         297 FK--NADMVIEAVFEDINIKHQVIKEIEAVVPPHC-VVATNTSAIPITK  342 (359)
Q Consensus       297 l~--~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~-ii~s~ts~~~~~~  342 (359)
                      ++  ++|+|++|+|.....  ++.....+.   +. +++--..+...++
T Consensus        59 l~~~~~D~V~i~tp~~~h~--~~~~~al~~---gk~v~~EKP~~~~~~~  102 (331)
T 4hkt_A           59 EAAADIDAVVICTPTDTHA--DLIERFARA---GKAIFCEKPIDLDAER  102 (331)
T ss_dssp             HHCTTCCEEEECSCGGGHH--HHHHHHHHT---TCEEEECSCSCSSHHH
T ss_pred             hcCCCCCEEEEeCCchhHH--HHHHHHHHc---CCcEEEecCCCCCHHH
Confidence            33  799999999987753  444443332   33 4443333444443

>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A*

Probab=97.62  E-value=6.6e-05  Score=72.94  Aligned_cols=87  Identities=20%  Similarity=0.215  Sum_probs=61.1

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CCCCC
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DPFKN  299 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~l~~  299 (359)
                      ++|+|+|.|.+|..+|..+...|.+|+++|+++.+...+..           .|             ... .++ +.+..
T Consensus       221 ktV~ViG~G~IGk~vA~~Lra~Ga~Viv~D~dp~ra~~A~~-----------~G-------------~~v-~~Leeal~~  275 (435)
T 3gvp_A          221 KQVVVCGYGEVGKGCCAALKAMGSIVYVTEIDPICALQACM-----------DG-------------FRL-VKLNEVIRQ  275 (435)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHH-----------TT-------------CEE-CCHHHHTTT
T ss_pred             CEEEEEeeCHHHHHHHHHHHHCCCEEEEEeCChhhhHHHHH-----------cC-------------CEe-ccHHHHHhc
Confidence            69999999999999999999999999999999875433211           01             111 123 45789


Q ss_pred             ccEEEEcccCCHHHHHHHH-HHHHHhCCCCcEEEEcCCC
Q psy9056         300 ADMVIEAVFEDINIKHQVI-KEIEAVVPPHCVVATNTSA  337 (359)
Q Consensus       300 aD~Vi~avp~~~~~k~~v~-~~l~~~~~~~~ii~s~ts~  337 (359)
                      +|+|+.| +.+..    ++ .+..+.++++.+|+..+.+
T Consensus       276 ADIVi~a-tgt~~----lI~~e~l~~MK~gailINvgrg  309 (435)
T 3gvp_A          276 VDIVITC-TGNKN----VVTREHLDRMKNSCIVCNMGHS  309 (435)
T ss_dssp             CSEEEEC-SSCSC----SBCHHHHHHSCTTEEEEECSST
T ss_pred             CCEEEEC-CCCcc----cCCHHHHHhcCCCcEEEEecCC
Confidence            9999997 44332    22 2344457888888766544

>1tlt_A Putative oxidoreductase (virulence factor MVIM HO; structural genomics, NYSGXRC, PSI, protein structure initiative; 2.70A {Escherichia coli} SCOP: c.2.1.3 d.81.1.5

Probab=97.61  E-value=0.00017  Score=67.37  Aligned_cols=97  Identities=10%  Similarity=0.030  Sum_probs=59.2

Q ss_pred             CCccEEEEECCCcchHH-HHHHHHHC-CCeeE-EecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc
Q psy9056         218 TPVKTVAVLGAGLMGAG-IAHVTVDK-GYNTI-VKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY  294 (359)
Q Consensus       218 ~~~~kI~IIG~G~mG~~-iA~~l~~~-G~~V~-l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~  294 (359)
                      |++.||+|||+|.||.. ++..+.+. +++|+ ++|+++++.+...+..          +             +...+++
T Consensus         3 m~~~~vgiiG~G~~g~~~~~~~l~~~~~~~lvav~d~~~~~~~~~~~~~----------g-------------~~~~~~~   59 (319)
T 1tlt_A            3 LKKLRIGVVGLGGIAQKAWLPVLAAASDWTLQGAWSPTRAKALPICESW----------R-------------IPYADSL   59 (319)
T ss_dssp             --CEEEEEECCSTHHHHTHHHHHHSCSSEEEEEEECSSCTTHHHHHHHH----------T-------------CCBCSSH
T ss_pred             CCcceEEEECCCHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHHc----------C-------------CCccCcH
Confidence            34468999999999997 88877764 67766 9999998766533211          0             1123333


Q ss_pred             CCC-CCccEEEEcccCCHHHHHHHHHHHHHhCCCCc-EEEEcCCCCcHHH
Q psy9056         295 DPF-KNADMVIEAVFEDINIKHQVIKEIEAVVPPHC-VVATNTSAIPITK  342 (359)
Q Consensus       295 ~~l-~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~-ii~s~ts~~~~~~  342 (359)
                      +.+ .++|+|++|+|.+...  ++.....+   .++ +++--......++
T Consensus        60 ~~l~~~~D~V~i~tp~~~h~--~~~~~al~---~G~~v~~eKP~~~~~~~  104 (319)
T 1tlt_A           60 SSLAASCDAVFVHSSTASHF--DVVSTLLN---AGVHVCVDKPLAENLRD  104 (319)
T ss_dssp             HHHHTTCSEEEECSCTTHHH--HHHHHHHH---TTCEEEEESSSCSSHHH
T ss_pred             HHhhcCCCEEEEeCCchhHH--HHHHHHHH---cCCeEEEeCCCCCCHHH
Confidence            333 6799999999987743  33333322   344 4443334444443

>3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima}

Probab=97.56  E-value=8.2e-06  Score=74.34  Aligned_cols=96  Identities=11%  Similarity=0.044  Sum_probs=62.9

Q ss_pred             EEEEECCCcchHHHHHHHHHCCC-eeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CCCCC
Q psy9056         222 TVAVLGAGLMGAGIAHVTVDKGY-NTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DPFKN  299 (359)
Q Consensus       222 kI~IIG~G~mG~~iA~~l~~~G~-~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~l~~  299 (359)
                      +|.|||+|.||.+++..|.+.|. +|+++||++++.+...+.+          +            .. ..++. +.+++
T Consensus       110 ~vliiGaGg~a~ai~~~L~~~G~~~I~v~nR~~~ka~~la~~~----------~------------~~-~~~~~~~~~~~  166 (253)
T 3u62_A          110 PVVVVGAGGAARAVIYALLQMGVKDIWVVNRTIERAKALDFPV----------K------------IF-SLDQLDEVVKK  166 (253)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCCEEEEESCHHHHHTCCSSC----------E------------EE-EGGGHHHHHHT
T ss_pred             eEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHc----------c------------cC-CHHHHHhhhcC
Confidence            89999999999999999999998 9999999998755432100          0            00 11122 34678


Q ss_pred             ccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCcHHHH
Q psy9056         300 ADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPITKI  343 (359)
Q Consensus       300 aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~l  343 (359)
                      +|+||.|+|....-....+.  .+.++++.++++...+ ++.-+
T Consensus       167 aDiVInatp~gm~p~~~~i~--~~~l~~~~~V~Divy~-~T~ll  207 (253)
T 3u62_A          167 AKSLFNTTSVGMKGEELPVS--DDSLKNLSLVYDVIYF-DTPLV  207 (253)
T ss_dssp             CSEEEECSSTTTTSCCCSCC--HHHHTTCSEEEECSSS-CCHHH
T ss_pred             CCEEEECCCCCCCCCCCCCC--HHHhCcCCEEEEeeCC-CcHHH
Confidence            99999999753210000111  1234678888887777 54433

>1xea_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, protein structure initiative, NYSGXRC, VCA1048, GFO/IDH/MOCA family oxidoreductase; 2.65A {Vibrio cholerae} SCOP: c.2.1.3 d.81.1.5

Probab=97.55  E-value=0.00034  Score=65.50  Aligned_cols=71  Identities=17%  Similarity=0.108  Sum_probs=49.5

Q ss_pred             cEEEEECCCcchH-HHHHHHHHC-CCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcCCC-
Q psy9056         221 KTVAVLGAGLMGA-GIAHVTVDK-GYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPF-  297 (359)
Q Consensus       221 ~kI~IIG~G~mG~-~iA~~l~~~-G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l-  297 (359)
                      .||+|||+|.||. .++..+.+. +++|+++|+++++++...+..          +.           ...+.++.+.+ 
T Consensus         3 ~~igiIG~G~ig~~~~~~~l~~~~~~~l~v~d~~~~~~~~~a~~~----------g~-----------~~~~~~~~~~l~   61 (323)
T 1xea_A            3 LKIAMIGLGDIAQKAYLPVLAQWPDIELVLCTRNPKVLGTLATRY----------RV-----------SATCTDYRDVLQ   61 (323)
T ss_dssp             EEEEEECCCHHHHHTHHHHHTTSTTEEEEEECSCHHHHHHHHHHT----------TC-----------CCCCSSTTGGGG
T ss_pred             cEEEEECCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHc----------CC-----------CccccCHHHHhh
Confidence            4899999999998 488888765 678889999998866543211          10           00022233445 


Q ss_pred             CCccEEEEcccCCHH
Q psy9056         298 KNADMVIEAVFEDIN  312 (359)
Q Consensus       298 ~~aD~Vi~avp~~~~  312 (359)
                      .++|+|++|+|.+..
T Consensus        62 ~~~D~V~i~tp~~~h   76 (323)
T 1xea_A           62 YGVDAVMIHAATDVH   76 (323)
T ss_dssp             GCCSEEEECSCGGGH
T ss_pred             cCCCEEEEECCchhH
Confidence            679999999997764

>3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1}

Probab=97.51  E-value=0.00016  Score=68.31  Aligned_cols=73  Identities=15%  Similarity=0.143  Sum_probs=50.5

Q ss_pred             CCccEEEEECCCcchHHHHHHHH-H-CCCe-eEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc
Q psy9056         218 TPVKTVAVLGAGLMGAGIAHVTV-D-KGYN-TIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY  294 (359)
Q Consensus       218 ~~~~kI~IIG~G~mG~~iA~~l~-~-~G~~-V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~  294 (359)
                      +++.+|+|||+|.||..++..+. + .|++ |.++|+++++++...+..          +.            ....+++
T Consensus         6 ~~~~~v~iiG~G~ig~~~~~~l~~~~~~~~~vav~d~~~~~~~~~a~~~----------g~------------~~~~~~~   63 (346)
T 3cea_A            6 RKPLRAAIIGLGRLGERHARHLVNKIQGVKLVAACALDSNQLEWAKNEL----------GV------------ETTYTNY   63 (346)
T ss_dssp             CCCEEEEEECCSTTHHHHHHHHHHTCSSEEEEEEECSCHHHHHHHHHTT----------CC------------SEEESCH
T ss_pred             CCcceEEEEcCCHHHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHHHh----------CC------------CcccCCH
Confidence            45579999999999999999988 4 3677 468899998766432210          10            0223344


Q ss_pred             C-CCC--CccEEEEcccCCHH
Q psy9056         295 D-PFK--NADMVIEAVFEDIN  312 (359)
Q Consensus       295 ~-~l~--~aD~Vi~avp~~~~  312 (359)
                      + .+.  ++|+|++|+|....
T Consensus        64 ~~~l~~~~~D~V~i~tp~~~h   84 (346)
T 3cea_A           64 KDMIDTENIDAIFIVAPTPFH   84 (346)
T ss_dssp             HHHHTTSCCSEEEECSCGGGH
T ss_pred             HHHhcCCCCCEEEEeCChHhH
Confidence            2 333  69999999997764

>3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus}

Probab=97.51  E-value=0.00012  Score=71.28  Aligned_cols=86  Identities=20%  Similarity=0.197  Sum_probs=60.5

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CCCCC
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DPFKN  299 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~l~~  299 (359)
                      ++|+|||.|.+|..+|..+...|.+|+++|+++.....+..           .             .+.+. ++ +.++.
T Consensus       248 KTVgVIG~G~IGr~vA~~lrafGa~Viv~d~dp~~a~~A~~-----------~-------------G~~vv-~LeElL~~  302 (464)
T 3n58_A          248 KVAVVCGYGDVGKGSAQSLAGAGARVKVTEVDPICALQAAM-----------D-------------GFEVV-TLDDAAST  302 (464)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHH-----------T-------------TCEEC-CHHHHGGG
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCEEEEEeCCcchhhHHHh-----------c-------------Cceec-cHHHHHhh
Confidence            78999999999999999999999999999999875332211           0             11111 22 45789


Q ss_pred             ccEEEEcccCCHHHHHHHH-HHHHHhCCCCcEEEEcCC
Q psy9056         300 ADMVIEAVFEDINIKHQVI-KEIEAVVPPHCVVATNTS  336 (359)
Q Consensus       300 aD~Vi~avp~~~~~k~~v~-~~l~~~~~~~~ii~s~ts  336 (359)
                      +|+|+.++...     .++ ++..+.++++.+|+..+-
T Consensus       303 ADIVv~atgt~-----~lI~~e~l~~MK~GAILINvGR  335 (464)
T 3n58_A          303 ADIVVTTTGNK-----DVITIDHMRKMKDMCIVGNIGH  335 (464)
T ss_dssp             CSEEEECCSSS-----SSBCHHHHHHSCTTEEEEECSS
T ss_pred             CCEEEECCCCc-----cccCHHHHhcCCCCeEEEEcCC
Confidence            99999986432     122 344456788998875543

>3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.04A {Thermotoga maritima}

Probab=97.50  E-value=0.00023  Score=67.25  Aligned_cols=95  Identities=13%  Similarity=0.081  Sum_probs=60.3

Q ss_pred             cEEEEECCCcchHHHHHHHHHC-CCeeE-EecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcC-CC
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDK-GYNTI-VKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYD-PF  297 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~-G~~V~-l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~l  297 (359)
                      .||+|||+|.||..++..+.+. +++|+ ++|+++++++...+...                      -....+|++ .+
T Consensus         3 ~rvgiIG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~----------------------~~~~~~~~~~ll   60 (344)
T 3ezy_A            3 LRIGVIGLGRIGTIHAENLKMIDDAILYAISDVREDRLREMKEKLG----------------------VEKAYKDPHELI   60 (344)
T ss_dssp             EEEEEECCSHHHHHHHHHGGGSTTEEEEEEECSCHHHHHHHHHHHT----------------------CSEEESSHHHHH
T ss_pred             eEEEEEcCCHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHhC----------------------CCceeCCHHHHh
Confidence            5899999999999999998875 56765 78999988665433211                      012334543 33


Q ss_pred             C--CccEEEEcccCCHHHHHHHHHHHHHhCCCCc-EEEEcCCCCcHHH
Q psy9056         298 K--NADMVIEAVFEDINIKHQVIKEIEAVVPPHC-VVATNTSAIPITK  342 (359)
Q Consensus       298 ~--~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~-ii~s~ts~~~~~~  342 (359)
                      +  ++|+|++|+|.....  ++.....+   .+. +++--.-.....+
T Consensus        61 ~~~~~D~V~i~tp~~~h~--~~~~~al~---~gk~v~~EKP~~~~~~e  103 (344)
T 3ezy_A           61 EDPNVDAVLVCSSTNTHS--ELVIACAK---AKKHVFCEKPLSLNLAD  103 (344)
T ss_dssp             HCTTCCEEEECSCGGGHH--HHHHHHHH---TTCEEEEESCSCSCHHH
T ss_pred             cCCCCCEEEEcCCCcchH--HHHHHHHh---cCCeEEEECCCCCCHHH
Confidence            3  799999999987653  44333333   233 4443333444443

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=97.49  E-value=3.6e-05  Score=74.14  Aligned_cols=100  Identities=23%  Similarity=0.213  Sum_probs=63.1

Q ss_pred             CccEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CCC
Q psy9056         219 PVKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DPF  297 (359)
Q Consensus       219 ~~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~l  297 (359)
                      +-++|+|+|+|.+|..++..+...|.+|+++|+++++++.+.+.+....    ......             ..++ +.+
T Consensus       167 ~g~~V~ViG~G~iG~~~a~~a~~~Ga~V~~~d~~~~~l~~~~~~~g~~~----~~~~~~-------------~~~l~~~l  229 (377)
T 2vhw_A          167 EPADVVVIGAGTAGYNAARIANGMGATVTVLDINIDKLRQLDAEFCGRI----HTRYSS-------------AYELEGAV  229 (377)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTTTSS----EEEECC-------------HHHHHHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHhcCCee----EeccCC-------------HHHHHHHH
Confidence            3479999999999999999999999999999999988765432111000    000000             0011 235


Q ss_pred             CCccEEEEcccCCHH-HHHHHHHHHHHhCCCCcEEEEcC
Q psy9056         298 KNADMVIEAVFEDIN-IKHQVIKEIEAVVPPHCVVATNT  335 (359)
Q Consensus       298 ~~aD~Vi~avp~~~~-~k~~v~~~l~~~~~~~~ii~s~t  335 (359)
                      .++|+||.|++.... ...-+.++..+.++++.+|++.+
T Consensus       230 ~~aDvVi~~~~~p~~~t~~li~~~~l~~mk~g~~iV~va  268 (377)
T 2vhw_A          230 KRADLVIGAVLVPGAKAPKLVSNSLVAHMKPGAVLVDIA  268 (377)
T ss_dssp             HHCSEEEECCCCTTSCCCCCBCHHHHTTSCTTCEEEEGG
T ss_pred             cCCCEEEECCCcCCCCCcceecHHHHhcCCCCcEEEEEe
Confidence            689999998853321 00111244455677888887665

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=97.48  E-value=0.0001  Score=70.69  Aligned_cols=111  Identities=17%  Similarity=0.094  Sum_probs=64.9

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHh-HH---HHHhhccCChHHHHhhhcccccccCc-C
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTG-LD---GAVKRKKMSALDRDRYLASLVGTLSY-D  295 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~-l~---~~~~~~~~~~~~~~~~~~~i~~~~~~-~  295 (359)
                      .+|+|||+|.+|..++..+...|.+|+++|+++++++.+.+ +... ..   .....+.......+...  .....++ +
T Consensus       185 ~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~~l~~~~~-lGa~~~~l~~~~~~~~gya~~~~~~~~--~~~~~~l~e  261 (381)
T 3p2y_A          185 ASALVLGVGVAGLQALATAKRLGAKTTGYDVRPEVAEQVRS-VGAQWLDLGIDAAGEGGYARELSEAER--AQQQQALED  261 (381)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHHTCEEEEECSSGGGHHHHHH-TTCEECCCC-------------CHHHH--HHHHHHHHH
T ss_pred             CEEEEECchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH-cCCeEEeccccccccccchhhhhHHHH--hhhHHHHHH
Confidence            69999999999999999999999999999999988776543 1100 00   00000000000000000  0001122 4


Q ss_pred             CCCCccEEEEcc--cCCHHHHHHHHHHHHHhCCCCcEEEEcC
Q psy9056         296 PFKNADMVIEAV--FEDINIKHQVIKEIEAVVPPHCVVATNT  335 (359)
Q Consensus       296 ~l~~aD~Vi~av--p~~~~~k~~v~~~l~~~~~~~~ii~s~t  335 (359)
                      .++++|+||.++  |....- .-+-+++.+.++++.+|++.+
T Consensus       262 ~l~~aDIVI~tv~iPg~~ap-~Lvt~emv~~MkpGsVIVDvA  302 (381)
T 3p2y_A          262 AITKFDIVITTALVPGRPAP-RLVTAAAATGMQPGSVVVDLA  302 (381)
T ss_dssp             HHTTCSEEEECCCCTTSCCC-CCBCHHHHHTSCTTCEEEETT
T ss_pred             HHhcCCEEEECCCCCCcccc-eeecHHHHhcCCCCcEEEEEe
Confidence            579999999986  432110 012255666788999998765

>3ulk_A Ketol-acid reductoisomerase; branched-chain amino acid biosynthesis, rossmann fold, acetolactate, oxidoreductase; HET: CSX NDP; 2.30A {Escherichia coli} PDB: 1yrl_A*

Probab=97.47  E-value=0.00022  Score=69.12  Aligned_cols=99  Identities=15%  Similarity=0.179  Sum_probs=70.9

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcCCCCCc
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPFKNA  300 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~a  300 (359)
                      ++|+|||.|+.|.+-|..|..+|.+|++=-|.....+...     .+.+..+             +.+.+.+-.++++.+
T Consensus        38 K~IaVIGyGsQG~AqAlNLRDSGv~V~Vglr~~s~~e~~~-----S~~~A~~-------------~Gf~v~~~~eA~~~A   99 (491)
T 3ulk_A           38 KKVVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRA-----SWRKATE-------------NGFKVGTYEELIPQA   99 (491)
T ss_dssp             SEEEEESCSHHHHHHHHHHHHTTCEEEEEECHHHHHTTCH-----HHHHHHH-------------TTCEEEEHHHHGGGC
T ss_pred             CEEEEeCCChHhHHHHhHHHhcCCcEEEEeCCCCcccccc-----hHHHHHH-------------CCCEecCHHHHHHhC
Confidence            8999999999999999999999999887665332111100     1111112             234444444789999


Q ss_pred             cEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCcH
Q psy9056         301 DMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPI  340 (359)
Q Consensus       301 D~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~  340 (359)
                      |+|+..+|+..  ...+++.|.++++++..+. .+.|..+
T Consensus       100 DvV~~L~PD~~--q~~vy~~I~p~lk~G~~L~-faHGFnI  136 (491)
T 3ulk_A          100 DLVINLTPDKQ--HSDVVRTVQPLMKDGAALG-YSHGFNI  136 (491)
T ss_dssp             SEEEECSCGGG--HHHHHHHHGGGSCTTCEEE-ESSCHHH
T ss_pred             CEEEEeCChhh--HHHHHHHHHhhCCCCCEEE-ecCcccc
Confidence            99999999887  4488999999999999875 3445444

>3hdj_A Probable ornithine cyclodeaminase; APC62486, bordetella pertussis TOH structural genomics, PSI-2, protein structure initiative; 1.70A {Bordetella pertussis}

Probab=97.46  E-value=7.1e-05  Score=70.24  Aligned_cols=92  Identities=18%  Similarity=0.159  Sum_probs=62.7

Q ss_pred             ccEEEEECCCcchHHHHHHHHHC--CCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CC
Q psy9056         220 VKTVAVLGAGLMGAGIAHVTVDK--GYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DP  296 (359)
Q Consensus       220 ~~kI~IIG~G~mG~~iA~~l~~~--G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~  296 (359)
                      -++|+|||+|.||..++..+...  ..+|++||++  +.+.....+...+      +.           .+... +. +.
T Consensus       121 ~~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r~--~a~~la~~l~~~~------g~-----------~~~~~-~~~ea  180 (313)
T 3hdj_A          121 SSVLGLFGAGTQGAEHAAQLSARFALEAILVHDPY--ASPEILERIGRRC------GV-----------PARMA-APADI  180 (313)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECTT--CCHHHHHHHHHHH------TS-----------CEEEC-CHHHH
T ss_pred             CcEEEEECccHHHHHHHHHHHHhCCCcEEEEECCc--HHHHHHHHHHHhc------CC-----------eEEEe-CHHHH
Confidence            37999999999999999988763  3589999999  4444333222110      10           12223 44 45


Q ss_pred             CCCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCC
Q psy9056         297 FKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSA  337 (359)
Q Consensus       297 l~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~  337 (359)
                      ++++|+||.|+|...    .++.  .+.++++++|...++.
T Consensus       181 v~~aDIVi~aT~s~~----pvl~--~~~l~~G~~V~~vGs~  215 (313)
T 3hdj_A          181 AAQADIVVTATRSTT----PLFA--GQALRAGAFVGAIGSS  215 (313)
T ss_dssp             HHHCSEEEECCCCSS----CSSC--GGGCCTTCEEEECCCS
T ss_pred             HhhCCEEEEccCCCC----cccC--HHHcCCCcEEEECCCC
Confidence            789999999998753    2332  3568899998876654

>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*

Probab=97.43  E-value=0.0002  Score=65.59  Aligned_cols=89  Identities=16%  Similarity=0.185  Sum_probs=61.2

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcCCCCCc
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPFKNA  300 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~a  300 (359)
                      ++|.|||+|.+|.+++..|.+.|.+|++++|++++.+... .+.                       +. ..+++.+.++
T Consensus       119 k~vlvlGaGGaaraia~~L~~~G~~v~V~nRt~~ka~~la-~~~-----------------------~~-~~~~~~l~~~  173 (269)
T 3phh_A          119 QNALILGAGGSAKALACELKKQGLQVSVLNRSSRGLDFFQ-RLG-----------------------CD-CFMEPPKSAF  173 (269)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTHHHHH-HHT-----------------------CE-EESSCCSSCC
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-HCC-----------------------Ce-EecHHHhccC
Confidence            7999999999999999999999999999999998766543 211                       11 1123445589


Q ss_pred             cEEEEcccCCHH----HHHHHHHHHHHhCCCCcEEEEcCCC
Q psy9056         301 DMVIEAVFEDIN----IKHQVIKEIEAVVPPHCVVATNTSA  337 (359)
Q Consensus       301 D~Vi~avp~~~~----~k~~v~~~l~~~~~~~~ii~s~ts~  337 (359)
                      |+||.|+|....    +-.+.   +...++++.++++..+.
T Consensus       174 DiVInaTp~Gm~~~~~l~~~~---l~~~l~~~~~v~D~vY~  211 (269)
T 3phh_A          174 DLIINATSASLHNELPLNKEV---LKGYFKEGKLAYDLAYG  211 (269)
T ss_dssp             SEEEECCTTCCCCSCSSCHHH---HHHHHHHCSEEEESCCS
T ss_pred             CEEEEcccCCCCCCCCCChHH---HHhhCCCCCEEEEeCCC
Confidence            999999986421    11111   22233467787776554

>2cby_A ATP-dependent CLP protease proteolytic subunit 1; serine protease, endopept mycobacterium tuberculosis, ATP-dependent protease; 2.6A {Mycobacterium tuberculosis} SCOP: c.14.1.1 PDB: 2c8t_A 2ce3_A

Probab=97.43  E-value=8.1e-05  Score=65.67  Aligned_cols=77  Identities=14%  Similarity=0.138  Sum_probs=56.2

Q ss_pred             CCCCchHHHHHHhcCE--EEEecCCceEEeccccCCCCCCCcchH-------------------hHHhhhcCh--HHHHH
Q psy9056           1 MFAEPSLATVALACHY--RIVVKDKKTGLGLPEVMLGLLPGAGGT-------------------QRLPKLTAL--PNVLD   57 (359)
Q Consensus         1 ~~a~GgG~~lalacD~--ria~~~~~~~~~~pe~~~Gi~p~~g~~-------------------~~l~~~~g~--~~a~~   57 (359)
                      |.|..+|.-++++||.  |+|.++  +.+++.+..-|.    .+.                   ..+.+..|.  ....+
T Consensus        94 g~AaS~g~~Ia~agd~~~~~a~p~--a~igih~p~~~~----~G~~~d~~~~~~~l~~~~~~~~~~~a~~~g~~~~~i~~  167 (208)
T 2cby_A           94 GMAASMGEFLLAAGTKGKRYALPH--ARILMHQPLGGV----TGSAADIAIQAEQFAVIKKEMFRLNAEFTGQPIERIEA  167 (208)
T ss_dssp             EEEETHHHHHHHTSCTTCEEECTT--CEEECCCC--------------CHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
T ss_pred             cEeHHHHHHHHhCCCcCCEEEcCC--cEEEEecccccc----cCCHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHH
Confidence            3578899999999998  999988  999888765321    111                   123333343  44566


Q ss_pred             HHhcCCCCCHHHHHHcCCcceecCCC
Q psy9056          58 MTLTGKTLKADKAKKMGIVDQLVEPL   83 (359)
Q Consensus        58 ~~ltg~~~~a~eA~~~Glv~~~~~~~   83 (359)
                      ++..++.++++||+++||||++.+..
T Consensus       168 ~~~~~~~~ta~eA~e~GLvD~i~~~~  193 (208)
T 2cby_A          168 DSDRDRWFTAAEALEYGFVDHIITRA  193 (208)
T ss_dssp             HHHTTCEEEHHHHHHHTSCSEECSCC
T ss_pred             HHhCCcEEcHHHHHHcCCCcEecCch
Confidence            78899999999999999999999863

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=97.42  E-value=0.00019  Score=68.88  Aligned_cols=99  Identities=18%  Similarity=0.222  Sum_probs=60.9

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CCCCC
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DPFKN  299 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~l~~  299 (359)
                      ++|+|+|+|.+|..++..+...|.+|+++|+++++++.+.+.+...    .. .            ......++ +.+.+
T Consensus       167 ~~V~ViGaG~iG~~~a~~l~~~Ga~V~~~d~~~~~~~~~~~~~g~~----~~-~------------~~~~~~~l~~~~~~  229 (369)
T 2eez_A          167 ASVVILGGGTVGTNAAKIALGMGAQVTILDVNHKRLQYLDDVFGGR----VI-T------------LTATEANIKKSVQH  229 (369)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTTTS----EE-E------------EECCHHHHHHHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHhcCce----EE-E------------ecCCHHHHHHHHhC
Confidence            7999999999999999999999999999999998776543211100    00 0            00000111 23468


Q ss_pred             ccEEEEcccCCHH-HHHHHHHHHHHhCCCCcEEEEcCC
Q psy9056         300 ADMVIEAVFEDIN-IKHQVIKEIEAVVPPHCVVATNTS  336 (359)
Q Consensus       300 aD~Vi~avp~~~~-~k~~v~~~l~~~~~~~~ii~s~ts  336 (359)
                      +|+||.|++.... ...-+.++..+.++++.+|+..++
T Consensus       230 ~DvVi~~~g~~~~~~~~li~~~~l~~mk~gg~iV~v~~  267 (369)
T 2eez_A          230 ADLLIGAVLVPGAKAPKLVTRDMLSLMKEGAVIVDVAV  267 (369)
T ss_dssp             CSEEEECCC-------CCSCHHHHTTSCTTCEEEECC-
T ss_pred             CCEEEECCCCCccccchhHHHHHHHhhcCCCEEEEEec
Confidence            9999999975431 111123445556677777765543

>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}

Probab=97.41  E-value=0.00012  Score=68.25  Aligned_cols=98  Identities=12%  Similarity=0.105  Sum_probs=63.5

Q ss_pred             ccEEEEECCCcchHHHHHHHHHCCC-eeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CCC
Q psy9056         220 VKTVAVLGAGLMGAGIAHVTVDKGY-NTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DPF  297 (359)
Q Consensus       220 ~~kI~IIG~G~mG~~iA~~l~~~G~-~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~l  297 (359)
                      -++|.|||+|.+|.+++..|++.|. +|+++||++++++...+.+..        . .         ......++. +.+
T Consensus       141 ~~~vlVlGaGg~g~aia~~L~~~G~~~V~v~nR~~~ka~~la~~~~~--------~-~---------~~~~~~~~~~~~~  202 (297)
T 2egg_A          141 GKRILVIGAGGGARGIYFSLLSTAAERIDMANRTVEKAERLVREGDE--------R-R---------SAYFSLAEAETRL  202 (297)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHSCS--------S-S---------CCEECHHHHHHTG
T ss_pred             CCEEEEECcHHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhhh--------c-c---------CceeeHHHHHhhh
Confidence            3689999999999999999999998 999999999887664432210        0 0         000000112 456


Q ss_pred             CCccEEEEcccCCHHHHH-H-HHHHHHHhCCCCcEEEEcCCC
Q psy9056         298 KNADMVIEAVFEDINIKH-Q-VIKEIEAVVPPHCVVATNTSA  337 (359)
Q Consensus       298 ~~aD~Vi~avp~~~~~k~-~-v~~~l~~~~~~~~ii~s~ts~  337 (359)
                      .++|+||.|+|....... . .+.  ...++++.++++.+..
T Consensus       203 ~~aDivIn~t~~~~~~~~~~~~i~--~~~l~~~~~v~D~~y~  242 (297)
T 2egg_A          203 AEYDIIINTTSVGMHPRVEVQPLS--LERLRPGVIVSDIIYN  242 (297)
T ss_dssp             GGCSEEEECSCTTCSSCCSCCSSC--CTTCCTTCEEEECCCS
T ss_pred             ccCCEEEECCCCCCCCCCCCCCCC--HHHcCCCCEEEEcCCC
Confidence            889999999986542000 0 011  2346678888776653

>1h6d_A Precursor form of glucose-fructose oxidoreductase; protein translocation, periplasmic oxidoreductase, signal peptide, ligand binding,; HET: NDP; 2.05A {Zymomonas mobilis} SCOP: c.2.1.3 d.81.1.5 PDB: 1h6b_A* 1h6a_A* 1h6c_A* 1ryd_A* 1rye_A* 1ofg_A* 1evj_A*

Probab=97.40  E-value=0.00048  Score=67.40  Aligned_cols=81  Identities=11%  Similarity=0.042  Sum_probs=54.0

Q ss_pred             CCCCCCccEEEEECCCcchH-HHHHHHHHC-CCee-EEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhccccc
Q psy9056         214 GKPQTPVKTVAVLGAGLMGA-GIAHVTVDK-GYNT-IVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVG  290 (359)
Q Consensus       214 ~~~~~~~~kI~IIG~G~mG~-~iA~~l~~~-G~~V-~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~  290 (359)
                      +.+.++..||+|||+|.||. .++..+.+. +++| .++|+++++.+...+..          + +..       ..+..
T Consensus        77 ~~~~~~~irigiIG~G~~g~~~~~~~l~~~~~~~lvav~d~~~~~~~~~a~~~----------g-~~~-------~~~~~  138 (433)
T 1h6d_A           77 PMPEDRRFGYAIVGLGKYALNQILPGFAGCQHSRIEALVSGNAEKAKIVAAEY----------G-VDP-------RKIYD  138 (433)
T ss_dssp             CCCCCCCEEEEEECCSHHHHHTHHHHTTTCSSEEEEEEECSCHHHHHHHHHHT----------T-CCG-------GGEEC
T ss_pred             CCCCCCceEEEEECCcHHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHHh----------C-CCc-------ccccc
Confidence            34456667999999999997 888888765 5664 68899998765433211          1 000       01223


Q ss_pred             ccCcCC-CC--CccEEEEcccCCHH
Q psy9056         291 TLSYDP-FK--NADMVIEAVFEDIN  312 (359)
Q Consensus       291 ~~~~~~-l~--~aD~Vi~avp~~~~  312 (359)
                      .+|++. +.  ++|+|++|+|.+..
T Consensus       139 ~~~~~~ll~~~~vD~V~iatp~~~h  163 (433)
T 1h6d_A          139 YSNFDKIAKDPKIDAVYIILPNSLH  163 (433)
T ss_dssp             SSSGGGGGGCTTCCEEEECSCGGGH
T ss_pred             cCCHHHHhcCCCCCEEEEcCCchhH
Confidence            455543 44  78999999998775

>3c1a_A Putative oxidoreductase; ZP_00056571.1, oxidoreductase FAM binding rossmann fold, structural genomics; HET: MSE PG4 PGE; 1.85A {Magnetospirillum magnetotacticum}

Probab=97.38  E-value=0.00022  Score=66.62  Aligned_cols=93  Identities=16%  Similarity=0.110  Sum_probs=59.1

Q ss_pred             CccEEEEECCCcchHHHHHHHHHC-CCee-EEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcC-
Q psy9056         219 PVKTVAVLGAGLMGAGIAHVTVDK-GYNT-IVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYD-  295 (359)
Q Consensus       219 ~~~kI~IIG~G~mG~~iA~~l~~~-G~~V-~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~-  295 (359)
                      +..||+|||+|.||..++..+.+. ++++ .++|+++++++...+                         .+...++++ 
T Consensus         9 ~~~~igiIG~G~~g~~~~~~l~~~~~~~~v~v~d~~~~~~~~~~~-------------------------~~~~~~~~~~   63 (315)
T 3c1a_A            9 SPVRLALIGAGRWGKNYIRTIAGLPGAALVRLASSNPDNLALVPP-------------------------GCVIESDWRS   63 (315)
T ss_dssp             CCEEEEEEECTTTTTTHHHHHHHCTTEEEEEEEESCHHHHTTCCT-------------------------TCEEESSTHH
T ss_pred             CcceEEEECCcHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHh-------------------------hCcccCCHHH
Confidence            346899999999999999999886 5664 589999886443110                         022334553 


Q ss_pred             CC--CCccEEEEcccCCHHHHHHHHHHHHHhCCCCc-EEEEcCCCCcHH
Q psy9056         296 PF--KNADMVIEAVFEDINIKHQVIKEIEAVVPPHC-VVATNTSAIPIT  341 (359)
Q Consensus       296 ~l--~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~-ii~s~ts~~~~~  341 (359)
                      .+  .++|+|++|+|.+...  ++.....+   .++ +++--.......
T Consensus        64 ~l~~~~~D~V~i~tp~~~h~--~~~~~al~---~Gk~v~~eKP~~~~~~  107 (315)
T 3c1a_A           64 VVSAPEVEAVIIATPPATHA--EITLAAIA---SGKAVLVEKPLTLDLA  107 (315)
T ss_dssp             HHTCTTCCEEEEESCGGGHH--HHHHHHHH---TTCEEEEESSSCSCHH
T ss_pred             HhhCCCCCEEEEeCChHHHH--HHHHHHHH---CCCcEEEcCCCcCCHH
Confidence            34  3799999999977643  44443322   344 444433444443

>3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium}

Probab=97.38  E-value=0.00043  Score=65.92  Aligned_cols=101  Identities=15%  Similarity=0.171  Sum_probs=62.0

Q ss_pred             CCCCccEEEEECCCcchHHHHHHHH-H-CCCeeE-EecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhccccccc
Q psy9056         216 PQTPVKTVAVLGAGLMGAGIAHVTV-D-KGYNTI-VKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTL  292 (359)
Q Consensus       216 ~~~~~~kI~IIG~G~mG~~iA~~l~-~-~G~~V~-l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~  292 (359)
                      ++|...||+|||+|.||..++..+. + .+++|+ ++|+++++++...+...          .           .....+
T Consensus        19 ~~m~~~rvgiIG~G~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~~g----------~-----------~~~~~~   77 (357)
T 3ec7_A           19 FQGMTLKAGIVGIGMIGSDHLRRLANTVSGVEVVAVCDIVAGRAQAALDKYA----------I-----------EAKDYN   77 (357)
T ss_dssp             ---CCEEEEEECCSHHHHHHHHHHHHTCTTEEEEEEECSSTTHHHHHHHHHT----------C-----------CCEEES
T ss_pred             cCCCeeeEEEECCcHHHHHHHHHHHhhCCCcEEEEEEeCCHHHHHHHHHHhC----------C-----------CCeeeC
Confidence            3466679999999999999999998 4 367765 78999988765433211          0           122344


Q ss_pred             CcC-CC--CCccEEEEcccCCHHHHHHHHHHHHHhCCCCc-EEEEcCCCCcHHH
Q psy9056         293 SYD-PF--KNADMVIEAVFEDINIKHQVIKEIEAVVPPHC-VVATNTSAIPITK  342 (359)
Q Consensus       293 ~~~-~l--~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~-ii~s~ts~~~~~~  342 (359)
                      +++ .+  .+.|+|++|+|.....  ++.....+   .+. +++--.-....++
T Consensus        78 ~~~~ll~~~~~D~V~i~tp~~~h~--~~~~~al~---aGk~Vl~EKPla~~~~e  126 (357)
T 3ec7_A           78 DYHDLINDKDVEVVIITASNEAHA--DVAVAALN---ANKYVFCEKPLAVTAAD  126 (357)
T ss_dssp             SHHHHHHCTTCCEEEECSCGGGHH--HHHHHHHH---TTCEEEEESSSCSSHHH
T ss_pred             CHHHHhcCCCCCEEEEcCCcHHHH--HHHHHHHH---CCCCEEeecCccCCHHH
Confidence            553 23  3689999999987753  44443333   233 4443333444443

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=97.38  E-value=5.6e-05  Score=73.12  Aligned_cols=112  Identities=15%  Similarity=0.129  Sum_probs=64.9

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHh-HHHHHhhccCChHHHHhhhcccc------cccC
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTG-LDGAVKRKKMSALDRDRYLASLV------GTLS  293 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~i~------~~~~  293 (359)
                      .+|+|||+|.+|..++..+...|.+|++||+++++++.+.+ +... ..-..+. ..+......+...++      -..+
T Consensus       191 ~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~~l~~~~~-~G~~~~~~~~~~-~~d~~~~~~ya~e~s~~~~~~~~~~  268 (405)
T 4dio_A          191 AKIFVMGAGVAGLQAIATARRLGAVVSATDVRPAAKEQVAS-LGAKFIAVEDEE-FKAAETAGGYAKEMSGEYQVKQAAL  268 (405)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSTTHHHHHHH-TTCEECCCCC------------------CHHHHHHHHH
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHH-cCCceeeccccc-ccccccccchhhhcchhhhhhhHhH
Confidence            69999999999999999999999999999999988776543 1100 0000000 000000000000000      0112


Q ss_pred             c-CCCCCccEEEEcc--cCCHHHHHHHHHHHHHhCCCCcEEEEcC
Q psy9056         294 Y-DPFKNADMVIEAV--FEDINIKHQVIKEIEAVVPPHCVVATNT  335 (359)
Q Consensus       294 ~-~~l~~aD~Vi~av--p~~~~~k~~v~~~l~~~~~~~~ii~s~t  335 (359)
                      + +.++++|+||.++  |.... -.-+-+++.+.++++.+|++.+
T Consensus       269 l~e~l~~aDVVI~tvlipg~~a-p~Lvt~emv~~Mk~GsVIVDvA  312 (405)
T 4dio_A          269 VAEHIAKQDIVITTALIPGRPA-PRLVTREMLDSMKPGSVVVDLA  312 (405)
T ss_dssp             HHHHHHTCSEEEECCCCSSSCC-CCCBCHHHHTTSCTTCEEEETT
T ss_pred             HHHHhcCCCEEEECCcCCCCCC-CEEecHHHHhcCCCCCEEEEEe
Confidence            2 4578999999986  43211 0012255666789999998765

>3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom protein structure initiative, PSI, NEW YORK structural GENO research consortium; HET: NAD; 1.95A {Listeria innocua}

Probab=97.35  E-value=0.00058  Score=65.02  Aligned_cols=72  Identities=18%  Similarity=0.171  Sum_probs=50.6

Q ss_pred             CCccEEEEECCCcchHHHHHHHHHC-CCeeE-EecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcC
Q psy9056         218 TPVKTVAVLGAGLMGAGIAHVTVDK-GYNTI-VKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYD  295 (359)
Q Consensus       218 ~~~~kI~IIG~G~mG~~iA~~l~~~-G~~V~-l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~  295 (359)
                      |+..||+|||+|.||...+..+.+. +++|+ ++|+++++.+.+.           +.             .+...+|++
T Consensus         3 m~~~~vgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~a~-----------~~-------------g~~~~~~~~   58 (359)
T 3e18_A            3 LKKYQLVIVGYGGMGSYHVTLASAADNLEVHGVFDILAEKREAAA-----------QK-------------GLKIYESYE   58 (359)
T ss_dssp             CCCEEEEEECCSHHHHHHHHHHHTSTTEEEEEEECSSHHHHHHHH-----------TT-------------TCCBCSCHH
T ss_pred             CCcCcEEEECcCHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHH-----------hc-------------CCceeCCHH
Confidence            3445899999999999999988876 66765 7799998754321           00             123345553


Q ss_pred             -CC--CCccEEEEcccCCHHH
Q psy9056         296 -PF--KNADMVIEAVFEDINI  313 (359)
Q Consensus       296 -~l--~~aD~Vi~avp~~~~~  313 (359)
                       .+  .+.|+|++|+|.+...
T Consensus        59 ~ll~~~~~D~V~i~tp~~~h~   79 (359)
T 3e18_A           59 AVLADEKVDAVLIATPNDSHK   79 (359)
T ss_dssp             HHHHCTTCCEEEECSCGGGHH
T ss_pred             HHhcCCCCCEEEEcCCcHHHH
Confidence             33  3789999999987753

>2glx_A 1,5-anhydro-D-fructose reductase; NADP(H) dependent reductase, rossmann-fold, sugar metabolism, 1,5-anhydro-D-mannitol, oxidoreductase; HET: NDP; 2.20A {Ensifer adhaerens}

Probab=97.33  E-value=0.00067  Score=63.57  Aligned_cols=69  Identities=10%  Similarity=0.029  Sum_probs=48.3

Q ss_pred             EEEEECCCcchHHH-HHHHHHCCCeeE-EecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcC-CCC
Q psy9056         222 TVAVLGAGLMGAGI-AHVTVDKGYNTI-VKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYD-PFK  298 (359)
Q Consensus       222 kI~IIG~G~mG~~i-A~~l~~~G~~V~-l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~l~  298 (359)
                      ||+|||+|.||..+ +..+.+.|++|+ ++|+++++.+...+..          +.            ....++++ .++
T Consensus         2 ~vgiiG~G~~g~~~~~~~l~~~~~~~vav~d~~~~~~~~~~~~~----------g~------------~~~~~~~~~~l~   59 (332)
T 2glx_A            2 RWGLIGASTIAREWVIGAIRATGGEVVSMMSTSAERGAAYATEN----------GI------------GKSVTSVEELVG   59 (332)
T ss_dssp             EEEEESCCHHHHHTHHHHHHHTTCEEEEEECSCHHHHHHHHHHT----------TC------------SCCBSCHHHHHT
T ss_pred             eEEEEcccHHHHHhhhHHhhcCCCeEEEEECCCHHHHHHHHHHc----------CC------------CcccCCHHHHhc
Confidence            79999999999998 777777778865 8899998766433211          10            01233443 333


Q ss_pred             --CccEEEEcccCCHH
Q psy9056         299 --NADMVIEAVFEDIN  312 (359)
Q Consensus       299 --~aD~Vi~avp~~~~  312 (359)
                        ++|+|++|+|.+..
T Consensus        60 ~~~~D~V~i~tp~~~h   75 (332)
T 2glx_A           60 DPDVDAVYVSTTNELH   75 (332)
T ss_dssp             CTTCCEEEECSCGGGH
T ss_pred             CCCCCEEEEeCChhHh
Confidence              59999999997764

>3bio_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, MCSG, PSI-2, GFO/IDH/MO family, protein structure initiative; HET: MSE EPE; 1.80A {Porphyromonas gingivalis}

Probab=97.28  E-value=0.00093  Score=62.22  Aligned_cols=87  Identities=9%  Similarity=0.069  Sum_probs=51.0

Q ss_pred             CCccEEEEECCCcchHHHHHHHHHC-CCeeE-EecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcC
Q psy9056         218 TPVKTVAVLGAGLMGAGIAHVTVDK-GYNTI-VKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYD  295 (359)
Q Consensus       218 ~~~~kI~IIG~G~mG~~iA~~l~~~-G~~V~-l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~  295 (359)
                      |+..||+|||+|+||..++..+.+. +++|+ ++|+++++++.              .+.           .....+++.
T Consensus         7 M~~irv~IIG~G~iG~~~~~~l~~~~~~elvav~d~~~~~~~~--------------~g~-----------~~~~~~~l~   61 (304)
T 3bio_A            7 DKKIRAAIVGYGNIGRYALQALREAPDFEIAGIVRRNPAEVPF--------------ELQ-----------PFRVVSDIE   61 (304)
T ss_dssp             -CCEEEEEECCSHHHHHHHHHHHHCTTEEEEEEECC---------------------CCT-----------TSCEESSGG
T ss_pred             CCCCEEEEECChHHHHHHHHHHhcCCCCEEEEEEcCCHHHHHH--------------cCC-----------CcCCHHHHH
Confidence            3446999999999999999998874 67876 78999875432              010           011123332


Q ss_pred             CCCCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEc
Q psy9056         296 PFKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATN  334 (359)
Q Consensus       296 ~l~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~  334 (359)
                      ...++|+|++|+|.....  ++....   +..+.-+++.
T Consensus        62 ~~~~~DvViiatp~~~h~--~~~~~a---l~aG~~Vi~e   95 (304)
T 3bio_A           62 QLESVDVALVCSPSREVE--RTALEI---LKKGICTADS   95 (304)
T ss_dssp             GSSSCCEEEECSCHHHHH--HHHHHH---HTTTCEEEEC
T ss_pred             hCCCCCEEEECCCchhhH--HHHHHH---HHcCCeEEEC
Confidence            337899999999866643  333333   3345544444

>1iuk_A Hypothetical protein TT1466; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.70A {Thermus thermophilus} SCOP: c.2.1.8 PDB: 1iul_A

Probab=97.27  E-value=0.00054  Score=56.43  Aligned_cols=103  Identities=21%  Similarity=0.083  Sum_probs=64.2

Q ss_pred             cEEEEECC----CcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcCC
Q psy9056         221 KTVAVLGA----GLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDP  296 (359)
Q Consensus       221 ~kI~IIG~----G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  296 (359)
                      ++|+|||+    |.+|..++..+.+.||+  +|++|+.+...                         ....+.+..++++
T Consensus        14 ~~vaVvGas~~~g~~G~~~~~~l~~~G~~--v~~vnp~~~~~-------------------------~i~G~~~~~sl~e   66 (140)
T 1iuk_A           14 KTIAVLGAHKDPSRPAHYVPRYLREQGYR--VLPVNPRFQGE-------------------------ELFGEEAVASLLD   66 (140)
T ss_dssp             CEEEEETCCSSTTSHHHHHHHHHHHTTCE--EEEECGGGTTS-------------------------EETTEECBSSGGG
T ss_pred             CEEEEECCCCCCCChHHHHHHHHHHCCCE--EEEeCCCcccC-------------------------cCCCEEecCCHHH
Confidence            68999999    89999999999999997  66777652100                         0012334444533


Q ss_pred             -CCCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCcHHHHHhhcC-CCCcEEe
Q psy9056         297 -FKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPITKIAAASK-RPDKVRN  355 (359)
Q Consensus       297 -l~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~-~~~rvig  355 (359)
                       -...|++++++|..  ...++++++.+.- ...+++.  ++..-.++.+.+. ..-+++|
T Consensus        67 l~~~vDlavi~vp~~--~~~~v~~~~~~~g-i~~i~~~--~g~~~~~~~~~a~~~Gir~vg  122 (140)
T 1iuk_A           67 LKEPVDILDVFRPPS--ALMDHLPEVLALR-PGLVWLQ--SGIRHPEFEKALKEAGIPVVA  122 (140)
T ss_dssp             CCSCCSEEEECSCHH--HHTTTHHHHHHHC-CSCEEEC--TTCCCHHHHHHHHHTTCCEEE
T ss_pred             CCCCCCEEEEEeCHH--HHHHHHHHHHHcC-CCEEEEc--CCcCHHHHHHHHHHcCCEEEc
Confidence             35699999999863  3567777766653 3355543  3333344444333 2345665

>1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5

Probab=97.26  E-value=0.00071  Score=62.03  Aligned_cols=67  Identities=15%  Similarity=0.104  Sum_probs=50.8

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCC-eeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcCCCCC
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGY-NTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPFKN  299 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~-~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~  299 (359)
                      ++|.|||+|-+|.+++..+...|. +|++++|+.++.+...+.+.                       ..+..+.+ +.+
T Consensus       120 ~~vlvlGaGgaarav~~~L~~~G~~~i~v~nRt~~ka~~la~~~~-----------------------~~~~~~~~-~~~  175 (271)
T 1npy_A          120 AKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNVKTGQYLAALYG-----------------------YAYINSLE-NQQ  175 (271)
T ss_dssp             SCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCHHHHHHHHHHHT-----------------------CEEESCCT-TCC
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcC-----------------------Cccchhhh-ccc
Confidence            689999999999999999999997 89999999988766543221                       01111222 568


Q ss_pred             ccEEEEcccCCH
Q psy9056         300 ADMVIEAVFEDI  311 (359)
Q Consensus       300 aD~Vi~avp~~~  311 (359)
                      +|+||.|+|...
T Consensus       176 ~DivInaTp~gm  187 (271)
T 1npy_A          176 ADILVNVTSIGM  187 (271)
T ss_dssp             CSEEEECSSTTC
T ss_pred             CCEEEECCCCCc
Confidence            999999998654

>3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A*

Probab=97.26  E-value=0.00065  Score=64.15  Aligned_cols=96  Identities=15%  Similarity=0.179  Sum_probs=60.1

Q ss_pred             cEEEEECCCcchHHHHHHHH-H-CCCeeE-EecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcC-C
Q psy9056         221 KTVAVLGAGLMGAGIAHVTV-D-KGYNTI-VKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYD-P  296 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~-~-~G~~V~-l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~  296 (359)
                      .||+|||+|.||..++..+. + .+++|+ ++|+++++++...+..          + +          .....++++ .
T Consensus         3 ~rigiIG~G~~g~~~~~~l~~~~~~~~l~av~d~~~~~~~~~~~~~----------g-~----------~~~~~~~~~~l   61 (344)
T 3mz0_A            3 LRIGVIGTGAIGKEHINRITNKLSGAEIVAVTDVNQEAAQKVVEQY----------Q-L----------NATVYPNDDSL   61 (344)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTCSSEEEEEEECSSHHHHHHHHHHT----------T-C----------CCEEESSHHHH
T ss_pred             EEEEEECccHHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHHh----------C-C----------CCeeeCCHHHH
Confidence            48999999999999999998 4 367765 7899998866543211          0 0          123345553 3


Q ss_pred             C--CCccEEEEcccCCHHHHHHHHHHHHHhCCCCc-EEEEcCCCCcHHH
Q psy9056         297 F--KNADMVIEAVFEDINIKHQVIKEIEAVVPPHC-VVATNTSAIPITK  342 (359)
Q Consensus       297 l--~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~-ii~s~ts~~~~~~  342 (359)
                      +  .++|+|++|+|.+...  ++.....+   .+. +++--.-....++
T Consensus        62 l~~~~~D~V~i~tp~~~h~--~~~~~al~---~Gk~vl~EKP~a~~~~e  105 (344)
T 3mz0_A           62 LADENVDAVLVTSWGPAHE--SSVLKAIK---AQKYVFCEKPLATTAEG  105 (344)
T ss_dssp             HHCTTCCEEEECSCGGGHH--HHHHHHHH---TTCEEEECSCSCSSHHH
T ss_pred             hcCCCCCEEEECCCchhHH--HHHHHHHH---CCCcEEEcCCCCCCHHH
Confidence            3  3589999999987753  44443333   334 4443333444444

>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1

Probab=97.25  E-value=0.00061  Score=65.14  Aligned_cols=40  Identities=18%  Similarity=0.276  Sum_probs=36.4

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHH
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGL  260 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~  260 (359)
                      ++|+|+|+|+||..+|..+...|.+|+++|++++++++..
T Consensus       174 ktV~V~G~G~VG~~~A~~L~~~GakVvv~D~~~~~l~~~a  213 (364)
T 1leh_A          174 LAVSVQGLGNVAKALCKKLNTEGAKLVVTDVNKAAVSAAV  213 (364)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHH
T ss_pred             CEEEEECchHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHH
Confidence            7899999999999999999999999999999998766543

>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A*

Probab=97.25  E-value=0.00044  Score=63.36  Aligned_cols=72  Identities=18%  Similarity=0.220  Sum_probs=51.5

Q ss_pred             ccEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcCCC--
Q psy9056         220 VKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPF--  297 (359)
Q Consensus       220 ~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l--  297 (359)
                      -++|.|+|+|.+|.+++..|++.|.+|++++|++++++...+.+..       .+            .+.. .+.+.+  
T Consensus       119 ~~~vlvlGaGg~g~a~a~~L~~~G~~v~v~~R~~~~a~~l~~~~~~-------~~------------~~~~-~~~~~~~~  178 (272)
T 1p77_A          119 NQHVLILGAGGATKGVLLPLLQAQQNIVLANRTFSKTKELAERFQP-------YG------------NIQA-VSMDSIPL  178 (272)
T ss_dssp             TCEEEEECCSHHHHTTHHHHHHTTCEEEEEESSHHHHHHHHHHHGG-------GS------------CEEE-EEGGGCCC
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHccc-------cC------------CeEE-eeHHHhcc
Confidence            3689999999999999999999999999999999887765443221       00            0111 122233  


Q ss_pred             CCccEEEEcccCCH
Q psy9056         298 KNADMVIEAVFEDI  311 (359)
Q Consensus       298 ~~aD~Vi~avp~~~  311 (359)
                      .++|+||.|+|...
T Consensus       179 ~~~DivIn~t~~~~  192 (272)
T 1p77_A          179 QTYDLVINATSAGL  192 (272)
T ss_dssp             SCCSEEEECCCC--
T ss_pred             CCCCEEEECCCCCC
Confidence            38999999998665

>3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B*

Probab=97.24  E-value=0.00056  Score=63.11  Aligned_cols=96  Identities=11%  Similarity=0.131  Sum_probs=63.1

Q ss_pred             ccEEEEECCCcchHHHHHHHHHCCC-eeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CCC
Q psy9056         220 VKTVAVLGAGLMGAGIAHVTVDKGY-NTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DPF  297 (359)
Q Consensus       220 ~~kI~IIG~G~mG~~iA~~l~~~G~-~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~l  297 (359)
                      -++|.|+|+|.+|.+++..|++.|. +|++++|++++.+...+.+..       .+            .+... ++ +..
T Consensus       126 ~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~~~a~~la~~~~~-------~~------------~~~~~-~~~~l~  185 (281)
T 3o8q_A          126 GATILLIGAGGAARGVLKPLLDQQPASITVTNRTFAKAEQLAELVAA-------YG------------EVKAQ-AFEQLK  185 (281)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTTCCSEEEEEESSHHHHHHHHHHHGG-------GS------------CEEEE-EGGGCC
T ss_pred             CCEEEEECchHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhc-------cC------------CeeEe-eHHHhc
Confidence            3799999999999999999999996 999999999887765543321       00            11111 12 222


Q ss_pred             CCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCC
Q psy9056         298 KNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSA  337 (359)
Q Consensus       298 ~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~  337 (359)
                      .++|+||.|+|.........+.  .+.++++.++++....
T Consensus       186 ~~aDiIInaTp~gm~~~~~~l~--~~~l~~~~~V~DlvY~  223 (281)
T 3o8q_A          186 QSYDVIINSTSASLDGELPAID--PVIFSSRSVCYDMMYG  223 (281)
T ss_dssp             SCEEEEEECSCCCC----CSCC--GGGEEEEEEEEESCCC
T ss_pred             CCCCEEEEcCcCCCCCCCCCCC--HHHhCcCCEEEEecCC
Confidence            7899999999976532111111  2345667777776543

>2d59_A Hypothetical protein PH1109; COA binding, structural genomics; 1.65A {Pyrococcus horikoshii} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X* 3qa9_A 3q9n_A* 3q9u_A*

Probab=97.23  E-value=0.0014  Score=54.18  Aligned_cols=101  Identities=12%  Similarity=-0.009  Sum_probs=63.6

Q ss_pred             cEEEEECC----CcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcCC
Q psy9056         221 KTVAVLGA----GLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDP  296 (359)
Q Consensus       221 ~kI~IIG~----G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  296 (359)
                      ++|+|||+    |.+|..++..+.+.||+  +|++|+.. +.                          +..+.+..++++
T Consensus        23 ~~iaVVGas~~~g~~G~~~~~~l~~~G~~--v~~Vnp~~-~~--------------------------i~G~~~y~sl~~   73 (144)
T 2d59_A           23 KKIALVGASPKPERDANIVMKYLLEHGYD--VYPVNPKY-EE--------------------------VLGRKCYPSVLD   73 (144)
T ss_dssp             CEEEEETCCSCTTSHHHHHHHHHHHTTCE--EEEECTTC-SE--------------------------ETTEECBSSGGG
T ss_pred             CEEEEEccCCCCCchHHHHHHHHHHCCCE--EEEECCCC-Ce--------------------------ECCeeccCCHHH
Confidence            58999999    79999999999999997  56666542 00                          012333444433


Q ss_pred             -CCCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCcHHHHHhhcC-CCCcEEe
Q psy9056         297 -FKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPITKIAAASK-RPDKVRN  355 (359)
Q Consensus       297 -l~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~-~~~rvig  355 (359)
                       ....|++++++|.+  ...++++++.+.- ...+++.  ++....++.+.+. ..-+++|
T Consensus        74 l~~~vDlvvi~vp~~--~~~~vv~~~~~~g-i~~i~~~--~g~~~~~l~~~a~~~Gi~vvG  129 (144)
T 2d59_A           74 IPDKIEVVDLFVKPK--LTMEYVEQAIKKG-AKVVWFQ--YNTYNREASKKADEAGLIIVA  129 (144)
T ss_dssp             CSSCCSEEEECSCHH--HHHHHHHHHHHHT-CSEEEEC--TTCCCHHHHHHHHHTTCEEEE
T ss_pred             cCCCCCEEEEEeCHH--HHHHHHHHHHHcC-CCEEEEC--CCchHHHHHHHHHHcCCEEEc
Confidence             35799999999864  3567777766543 3455433  3434445544443 2345654

>2p2s_A Putative oxidoreductase; YP_050235.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.25A {Pectobacterium atrosepticum SCRI1043}

Probab=97.21  E-value=0.00044  Score=65.06  Aligned_cols=73  Identities=16%  Similarity=0.049  Sum_probs=50.0

Q ss_pred             CCccEEEEECCCcchH-HHHHHHHHCCCee-EEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcC
Q psy9056         218 TPVKTVAVLGAGLMGA-GIAHVTVDKGYNT-IVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYD  295 (359)
Q Consensus       218 ~~~~kI~IIG~G~mG~-~iA~~l~~~G~~V-~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~  295 (359)
                      |+..||+|||+|.+|. .++..+...|++| .++|+++++.+...+.+                      ......+|++
T Consensus         2 M~~~rvgiiG~G~~~~~~~~~~l~~~~~~lvav~d~~~~~~~~~a~~~----------------------~~~~~~~~~~   59 (336)
T 2p2s_A            2 MKKIRFAAIGLAHNHIYDMCQQLIDAGAELAGVFESDSDNRAKFTSLF----------------------PSVPFAASAE   59 (336)
T ss_dssp             --CCEEEEECCSSTHHHHHHHHHHHTTCEEEEEECSCTTSCHHHHHHS----------------------TTCCBCSCHH
T ss_pred             CCccEEEEECCChHHHHHhhhhhcCCCcEEEEEeCCCHHHHHHHHHhc----------------------CCCcccCCHH
Confidence            4456999999999996 6777777778885 68899998765533211                      1123345553


Q ss_pred             -CC--CCccEEEEcccCCHH
Q psy9056         296 -PF--KNADMVIEAVFEDIN  312 (359)
Q Consensus       296 -~l--~~aD~Vi~avp~~~~  312 (359)
                       .+  .+.|+|++|+|.+..
T Consensus        60 ~ll~~~~~D~V~i~tp~~~h   79 (336)
T 2p2s_A           60 QLITDASIDLIACAVIPCDR   79 (336)
T ss_dssp             HHHTCTTCCEEEECSCGGGH
T ss_pred             HHhhCCCCCEEEEeCChhhH
Confidence             33  368999999998775

>4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli}

Probab=97.19  E-value=0.00079  Score=63.61  Aligned_cols=74  Identities=9%  Similarity=0.063  Sum_probs=50.5

Q ss_pred             CCccEEEEECCCcchHH-HHHHHHHC-CCeeE-EecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc
Q psy9056         218 TPVKTVAVLGAGLMGAG-IAHVTVDK-GYNTI-VKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY  294 (359)
Q Consensus       218 ~~~~kI~IIG~G~mG~~-iA~~l~~~-G~~V~-l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~  294 (359)
                      +.|-||||||+|.||.. ++..+.+. +.+|+ ++|+++++++...+.+.                      --...+|+
T Consensus        21 ~~mirigiIG~G~ig~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~g----------------------~~~~y~d~   78 (350)
T 4had_A           21 QSMLRFGIISTAKIGRDNVVPAIQDAENCVVTAIASRDLTRAREMADRFS----------------------VPHAFGSY   78 (350)
T ss_dssp             -CCEEEEEESCCHHHHHTHHHHHHHCSSEEEEEEECSSHHHHHHHHHHHT----------------------CSEEESSH
T ss_pred             cCccEEEEEcChHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHHcC----------------------CCeeeCCH
Confidence            56789999999999976 45566655 56765 78999998776543221                      11234555


Q ss_pred             CC-C--CCccEEEEcccCCHHH
Q psy9056         295 DP-F--KNADMVIEAVFEDINI  313 (359)
Q Consensus       295 ~~-l--~~aD~Vi~avp~~~~~  313 (359)
                      ++ +  .+.|+|++|+|.+...
T Consensus        79 ~ell~~~~iDaV~I~tP~~~H~  100 (350)
T 4had_A           79 EEMLASDVIDAVYIPLPTSQHI  100 (350)
T ss_dssp             HHHHHCSSCSEEEECSCGGGHH
T ss_pred             HHHhcCCCCCEEEEeCCCchhH
Confidence            43 3  5689999999987753

>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1

Probab=97.19  E-value=0.00029  Score=68.35  Aligned_cols=70  Identities=26%  Similarity=0.305  Sum_probs=50.6

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCC-eeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CCCC
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGY-NTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DPFK  298 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~-~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~l~  298 (359)
                      ++|+|||+|.||..++..+...|. +|+++|+++++++.....+..        ..            +. .+++ +.+.
T Consensus       168 ~~VlIiGaG~iG~~~a~~l~~~G~~~V~v~~r~~~ra~~la~~~g~--------~~------------~~-~~~l~~~l~  226 (404)
T 1gpj_A          168 KTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDLGG--------EA------------VR-FDELVDHLA  226 (404)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHHTC--------EE------------CC-GGGHHHHHH
T ss_pred             CEEEEEChHHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCC--------ce------------ec-HHhHHHHhc
Confidence            689999999999999999999998 999999999876443221110        00            00 0122 3357


Q ss_pred             CccEEEEcccCCH
Q psy9056         299 NADMVIEAVFEDI  311 (359)
Q Consensus       299 ~aD~Vi~avp~~~  311 (359)
                      ++|+||.|+|...
T Consensus       227 ~aDvVi~at~~~~  239 (404)
T 1gpj_A          227 RSDVVVSATAAPH  239 (404)
T ss_dssp             TCSEEEECCSSSS
T ss_pred             CCCEEEEccCCCC
Confidence            8999999998654

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=97.19  E-value=0.0015  Score=63.48  Aligned_cols=94  Identities=16%  Similarity=0.144  Sum_probs=60.3

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc--CCCC
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY--DPFK  298 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~l~  298 (359)
                      ++|.|+|.|.+|..++..|...|++|+++|.|+++++.+...-   .  .+-.|..+.            ...+  ..+.
T Consensus         5 ~~viIiG~Gr~G~~va~~L~~~g~~vvvId~d~~~v~~~~~~g---~--~vi~GDat~------------~~~L~~agi~   67 (413)
T 3l9w_A            5 MRVIIAGFGRFGQITGRLLLSSGVKMVVLDHDPDHIETLRKFG---M--KVFYGDATR------------MDLLESAGAA   67 (413)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEECCHHHHHHHHHTT---C--CCEESCTTC------------HHHHHHTTTT
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHhCC---C--eEEEcCCCC------------HHHHHhcCCC
Confidence            4799999999999999999999999999999999877654210   0  000000000            0001  2378


Q ss_pred             CccEEEEcccCCHHHHHHHHHHHHHhCCCC-cEEEE
Q psy9056         299 NADMVIEAVFEDINIKHQVIKEIEAVVPPH-CVVAT  333 (359)
Q Consensus       299 ~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~-~ii~s  333 (359)
                      ++|+||.+++++.. -..+...+... .++ .||+-
T Consensus        68 ~A~~viv~~~~~~~-n~~i~~~ar~~-~p~~~Iiar  101 (413)
T 3l9w_A           68 KAEVLINAIDDPQT-NLQLTEMVKEH-FPHLQIIAR  101 (413)
T ss_dssp             TCSEEEECCSSHHH-HHHHHHHHHHH-CTTCEEEEE
T ss_pred             ccCEEEECCCChHH-HHHHHHHHHHh-CCCCeEEEE
Confidence            99999999987553 22333334444 455 45543

>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A*

Probab=97.17  E-value=0.00098  Score=65.83  Aligned_cols=88  Identities=18%  Similarity=0.093  Sum_probs=61.2

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcCCCCCc
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPFKNA  300 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~a  300 (359)
                      ++|.|+|+|.+|.++|..++..|.+|+++|+++.+.+.+..           .+             ....+..+.+..+
T Consensus       266 KtVvVtGaGgIG~aiA~~Laa~GA~Viv~D~~~~~a~~Aa~-----------~g-------------~dv~~lee~~~~a  321 (488)
T 3ond_A          266 KVAVVAGYGDVGKGCAAALKQAGARVIVTEIDPICALQATM-----------EG-------------LQVLTLEDVVSEA  321 (488)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHH-----------TT-------------CEECCGGGTTTTC
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHH-----------hC-------------CccCCHHHHHHhc
Confidence            78999999999999999999999999999999987554322           01             1111112457889


Q ss_pred             cEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCC
Q psy9056         301 DMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTS  336 (359)
Q Consensus       301 D~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts  336 (359)
                      |+|+.+.....-+.    .+..+.++++.+|+....
T Consensus       322 DvVi~atG~~~vl~----~e~l~~mk~gaiVvNaG~  353 (488)
T 3ond_A          322 DIFVTTTGNKDIIM----LDHMKKMKNNAIVCNIGH  353 (488)
T ss_dssp             SEEEECSSCSCSBC----HHHHTTSCTTEEEEESSS
T ss_pred             CEEEeCCCChhhhh----HHHHHhcCCCeEEEEcCC
Confidence            99998764322111    223445788888876654

>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5

Probab=97.15  E-value=0.00086  Score=61.36  Aligned_cols=95  Identities=15%  Similarity=0.163  Sum_probs=61.6

Q ss_pred             ccEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcCCC--
Q psy9056         220 VKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPF--  297 (359)
Q Consensus       220 ~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l--  297 (359)
                      -++|.|+|+|.+|.+++..+++.|.+|+++||++++++...+.+..       .+            .+.. .+.+.+  
T Consensus       119 ~k~vlViGaGg~g~a~a~~L~~~G~~V~v~~R~~~~~~~la~~~~~-------~~------------~~~~-~~~~~~~~  178 (271)
T 1nyt_A          119 GLRILLIGAGGASRGVLLPLLSLDCAVTITNRTVSRAEELAKLFAH-------TG------------SIQA-LSMDELEG  178 (271)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHTGG-------GS------------SEEE-CCSGGGTT
T ss_pred             CCEEEEECCcHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHhhc-------cC------------CeeE-ecHHHhcc
Confidence            3689999999999999999999999999999999887665432210       00            0111 112222  


Q ss_pred             CCccEEEEcccCCHHHHHHHHHHH-HHhCCCCcEEEEcCCC
Q psy9056         298 KNADMVIEAVFEDINIKHQVIKEI-EAVVPPHCVVATNTSA  337 (359)
Q Consensus       298 ~~aD~Vi~avp~~~~~k~~v~~~l-~~~~~~~~ii~s~ts~  337 (359)
                      ..+|+||.++|....  ..+ ..+ ...++++.++++....
T Consensus       179 ~~~DivVn~t~~~~~--~~~-~~i~~~~l~~~~~v~D~~y~  216 (271)
T 1nyt_A          179 HEFDLIINATSSGIS--GDI-PAIPSSLIHPGIYCYDMFYQ  216 (271)
T ss_dssp             CCCSEEEECCSCGGG--TCC-CCCCGGGCCTTCEEEESCCC
T ss_pred             CCCCEEEECCCCCCC--CCC-CCCCHHHcCCCCEEEEeccC
Confidence            589999999985442  000 011 1235677777765543

>3m2t_A Probable dehydrogenase; PSI, SGXNY, structural genomics, protein structure initiative; HET: NAD; 2.30A {Chromobacterium violaceum}

Probab=97.15  E-value=0.00051  Score=65.46  Aligned_cols=73  Identities=12%  Similarity=0.034  Sum_probs=50.0

Q ss_pred             CCccEEEEECCCcchHH-HHHHHHHC-CCeeE-EecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc
Q psy9056         218 TPVKTVAVLGAGLMGAG-IAHVTVDK-GYNTI-VKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY  294 (359)
Q Consensus       218 ~~~~kI~IIG~G~mG~~-iA~~l~~~-G~~V~-l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~  294 (359)
                      |+..||+|||+|.||.. ++..+.+. +.+|+ ++|+++++++...+           .           .......+|+
T Consensus         3 M~~~rigiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~-----------~-----------~~~~~~~~~~   60 (359)
T 3m2t_A            3 LSLIKVGLVGIGAQMQENLLPSLLQMQDIRIVAACDSDLERARRVHR-----------F-----------ISDIPVLDNV   60 (359)
T ss_dssp             CCCEEEEEECCSHHHHHTHHHHHHTCTTEEEEEEECSSHHHHGGGGG-----------T-----------SCSCCEESSH
T ss_pred             CCcceEEEECCCHHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHHH-----------h-----------cCCCcccCCH
Confidence            33458999999999985 78888776 67765 88999987554321           0           1123344566


Q ss_pred             CC-C--CCccEEEEcccCCHH
Q psy9056         295 DP-F--KNADMVIEAVFEDIN  312 (359)
Q Consensus       295 ~~-l--~~aD~Vi~avp~~~~  312 (359)
                      ++ +  .+.|+|++|+|.+..
T Consensus        61 ~~ll~~~~vD~V~i~tp~~~H   81 (359)
T 3m2t_A           61 PAMLNQVPLDAVVMAGPPQLH   81 (359)
T ss_dssp             HHHHHHSCCSEEEECSCHHHH
T ss_pred             HHHhcCCCCCEEEEcCCcHHH
Confidence            43 4  356999999996654

>1ydw_A AX110P-like protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT4G09670; 2.49A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.5 PDB: 2q4e_A

Probab=97.12  E-value=0.001  Score=63.27  Aligned_cols=75  Identities=9%  Similarity=-0.013  Sum_probs=50.2

Q ss_pred             CccEEEEECCCcchHHHHHHHHHC-CCee-EEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcC-
Q psy9056         219 PVKTVAVLGAGLMGAGIAHVTVDK-GYNT-IVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYD-  295 (359)
Q Consensus       219 ~~~kI~IIG~G~mG~~iA~~l~~~-G~~V-~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~-  295 (359)
                      ++.||+|||+|.||..++..+.+. ++++ .++|+++++.+...+..          + +.        ......++++ 
T Consensus         5 ~~~~vgiiG~G~ig~~~~~~l~~~~~~~lv~v~d~~~~~~~~~a~~~----------~-~~--------~~~~~~~~~~~   65 (362)
T 1ydw_A            5 TQIRIGVMGCADIARKVSRAIHLAPNATISGVASRSLEKAKAFATAN----------N-YP--------ESTKIHGSYES   65 (362)
T ss_dssp             -CEEEEEESCCTTHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHT----------T-CC--------TTCEEESSHHH
T ss_pred             CceEEEEECchHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHHh----------C-CC--------CCCeeeCCHHH
Confidence            346899999999999999988875 5665 58899998765433211          0 00        0122334553 


Q ss_pred             CC--CCccEEEEcccCCHH
Q psy9056         296 PF--KNADMVIEAVFEDIN  312 (359)
Q Consensus       296 ~l--~~aD~Vi~avp~~~~  312 (359)
                      .+  .++|+|++|+|.+..
T Consensus        66 ll~~~~~D~V~i~tp~~~h   84 (362)
T 1ydw_A           66 LLEDPEIDALYVPLPTSLH   84 (362)
T ss_dssp             HHHCTTCCEEEECCCGGGH
T ss_pred             HhcCCCCCEEEEcCChHHH
Confidence            33  368999999997774

>3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics; 2.00A {Streptococcus agalactiae serogroup V}

Probab=97.12  E-value=0.00031  Score=66.06  Aligned_cols=97  Identities=9%  Similarity=0.007  Sum_probs=58.0

Q ss_pred             CCccEEEEECCCcchHHHHHHHHHCC-Cee-EEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhccc-ccccCc
Q psy9056         218 TPVKTVAVLGAGLMGAGIAHVTVDKG-YNT-IVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASL-VGTLSY  294 (359)
Q Consensus       218 ~~~~kI~IIG~G~mG~~iA~~l~~~G-~~V-~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i-~~~~~~  294 (359)
                      |++.||+|||+|.||..++..+.+.+ .+| .++|+++++++...+           ..            .+ ...+++
T Consensus         3 m~~~rigiiG~G~ig~~~~~~l~~~~~~~~~av~d~~~~~~~~~a~-----------~~------------~~~~~~~~~   59 (329)
T 3evn_A            3 LSKVRYGVVSTAKVAPRFIEGVRLAGNGEVVAVSSRTLESAQAFAN-----------KY------------HLPKAYDKL   59 (329)
T ss_dssp             --CEEEEEEBCCTTHHHHHHHHHHHCSEEEEEEECSCSSTTCC--------------CC------------CCSCEESCH
T ss_pred             CCceEEEEEechHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHHH-----------Hc------------CCCcccCCH
Confidence            44569999999999999999888764 454 478999876443221           00            11 234555


Q ss_pred             C-CCC--CccEEEEcccCCHHHHHHHHHHHHHhCCCCc-EEEEcCCCCcHHH
Q psy9056         295 D-PFK--NADMVIEAVFEDINIKHQVIKEIEAVVPPHC-VVATNTSAIPITK  342 (359)
Q Consensus       295 ~-~l~--~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~-ii~s~ts~~~~~~  342 (359)
                      + .+.  ++|+|++|+|.+...  ++.....+   .+. +++--.-....++
T Consensus        60 ~~ll~~~~~D~V~i~tp~~~h~--~~~~~al~---aGk~Vl~EKP~a~~~~e  106 (329)
T 3evn_A           60 EDMLADESIDVIYVATINQDHY--KVAKAALL---AGKHVLVEKPFTLTYDQ  106 (329)
T ss_dssp             HHHHTCTTCCEEEECSCGGGHH--HHHHHHHH---TTCEEEEESSCCSSHHH
T ss_pred             HHHhcCCCCCEEEECCCcHHHH--HHHHHHHH---CCCeEEEccCCcCCHHH
Confidence            3 344  799999999987753  44333332   233 4443333444443

>1f06_A MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH-inhibitor ternary complex, oxidoreductase; HET: NDP 2NP; 2.10A {Corynebacterium glutamicum} SCOP: c.2.1.3 d.81.1.3 PDB: 1dap_A* 2dap_A* 3dap_A*

Probab=97.10  E-value=0.00074  Score=63.39  Aligned_cols=93  Identities=11%  Similarity=0.103  Sum_probs=57.7

Q ss_pred             CccEEEEECCCcchHHHHHHHHHC-CCe-eEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcC-
Q psy9056         219 PVKTVAVLGAGLMGAGIAHVTVDK-GYN-TIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYD-  295 (359)
Q Consensus       219 ~~~kI~IIG~G~mG~~iA~~l~~~-G~~-V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~-  295 (359)
                      +..||+|||+|+||..++..+.+. +.+ |.++|++++.  ..        .                . .+...+|++ 
T Consensus         2 ~~irV~IiG~G~mG~~~~~~l~~~~~~elvav~d~~~~~--~~--------~----------------~-gv~~~~d~~~   54 (320)
T 1f06_A            2 TNIRVAIVGYGNLGRSVEKLIAKQPDMDLVGIFSRRATL--DT--------K----------------T-PVFDVADVDK   54 (320)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHTTCSSEEEEEEEESSSCC--SS--------S----------------S-CEEEGGGGGG
T ss_pred             CCCEEEEEeecHHHHHHHHHHhcCCCCEEEEEEcCCHHH--hh--------c----------------C-CCceeCCHHH
Confidence            345899999999999999999877 456 4588988653  10        0                0 123344553 


Q ss_pred             CCCCccEEEEcccCCHHHHHHHHHHHHHhCCCCc-EEEEcCCCCcHHHH
Q psy9056         296 PFKNADMVIEAVFEDINIKHQVIKEIEAVVPPHC-VVATNTSAIPITKI  343 (359)
Q Consensus       296 ~l~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~-ii~s~ts~~~~~~l  343 (359)
                      .+.++|+||+|+|.+.. ...+..    .+..+. +|++.+.+....++
T Consensus        55 ll~~~DvViiatp~~~h-~~~~~~----al~aG~~Vv~ekp~~~~~~~~   98 (320)
T 1f06_A           55 HADDVDVLFLCMGSATD-IPEQAP----KFAQFACTVDTYDNHRDIPRH   98 (320)
T ss_dssp             TTTTCSEEEECSCTTTH-HHHHHH----HHTTTSEEECCCCCGGGHHHH
T ss_pred             HhcCCCEEEEcCCcHHH-HHHHHH----HHHCCCEEEECCCCcCCHHHH
Confidence            34789999999987764 222222    233355 44444444555444

>3ohs_X Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; dimeric dihydrodiol dehydrogenase, MDD, oxidoreductase; 1.90A {Macaca fascicularis} PDB: 2o48_X 2poq_X* 2o4u_X

Probab=97.08  E-value=0.0013  Score=61.73  Aligned_cols=71  Identities=10%  Similarity=-0.020  Sum_probs=49.9

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCC---e-eEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcCC
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGY---N-TIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDP  296 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~---~-V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  296 (359)
                      .||+|||+|.||..++..+.+.+.   + |.++|+++++.+...+...                      --...+|++.
T Consensus         3 ~rigiiG~G~ig~~~~~~l~~~~~~~~~l~av~d~~~~~a~~~a~~~~----------------------~~~~~~~~~~   60 (334)
T 3ohs_X            3 LRWGIVSVGLISSDFTAVLQTLPRSEHQVVAVAARDLSRAKEFAQKHD----------------------IPKAYGSYEE   60 (334)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTSCTTTEEEEEEECSSHHHHHHHHHHHT----------------------CSCEESSHHH
T ss_pred             cEEEEECchHHHHHHHHHHHhCCCCCeEEEEEEcCCHHHHHHHHHHcC----------------------CCcccCCHHH
Confidence            589999999999999998877642   3 5678999988665433211                      0123445532


Q ss_pred             -C--CCccEEEEcccCCHHH
Q psy9056         297 -F--KNADMVIEAVFEDINI  313 (359)
Q Consensus       297 -l--~~aD~Vi~avp~~~~~  313 (359)
                       +  .+.|+|++|+|.+...
T Consensus        61 ll~~~~vD~V~i~tp~~~H~   80 (334)
T 3ohs_X           61 LAKDPNVEVAYVGTQHPQHK   80 (334)
T ss_dssp             HHHCTTCCEEEECCCGGGHH
T ss_pred             HhcCCCCCEEEECCCcHHHH
Confidence             3  4699999999988753

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=97.06  E-value=0.0017  Score=58.92  Aligned_cols=39  Identities=13%  Similarity=0.217  Sum_probs=35.2

Q ss_pred             ccEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHH
Q psy9056         220 VKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLAR  258 (359)
Q Consensus       220 ~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~  258 (359)
                      +++|.|.|+|.+|+.++..|.+.|++|++++++++..+.
T Consensus         5 ~~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~   43 (286)
T 3ius_A            5 TGTLLSFGHGYTARVLSRALAPQGWRIIGTSRNPDQMEA   43 (286)
T ss_dssp             CCEEEEETCCHHHHHHHHHHGGGTCEEEEEESCGGGHHH
T ss_pred             cCcEEEECCcHHHHHHHHHHHHCCCEEEEEEcChhhhhh
Confidence            468999999999999999999999999999999876443

>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A

Probab=97.05  E-value=0.00054  Score=63.24  Aligned_cols=99  Identities=19%  Similarity=0.173  Sum_probs=63.6

Q ss_pred             ccEEEEECCCcchHHHHHHHHHCCC-eeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhccccccc--Cc-C
Q psy9056         220 VKTVAVLGAGLMGAGIAHVTVDKGY-NTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTL--SY-D  295 (359)
Q Consensus       220 ~~kI~IIG~G~mG~~iA~~l~~~G~-~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~--~~-~  295 (359)
                      -+++.|+|+|-+|.+++..++..|. +|++++|++++.+...+.+.....     +           -.+...+  ++ +
T Consensus       127 ~k~vlVlGaGG~g~aia~~L~~~G~~~v~i~~R~~~~a~~la~~~~~~~~-----~-----------~~i~~~~~~~l~~  190 (283)
T 3jyo_A          127 LDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVINNAVG-----R-----------EAVVGVDARGIED  190 (283)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHHT-----S-----------CCEEEECSTTHHH
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhhcC-----C-----------ceEEEcCHHHHHH
Confidence            3789999999999999999999998 799999999988776554432100     0           0111111  22 2


Q ss_pred             CCCCccEEEEcccCCHHHHHH-HHHHHHHhCCCCcEEEEcCC
Q psy9056         296 PFKNADMVIEAVFEDINIKHQ-VIKEIEAVVPPHCVVATNTS  336 (359)
Q Consensus       296 ~l~~aD~Vi~avp~~~~~k~~-v~~~l~~~~~~~~ii~s~ts  336 (359)
                      .+.++|+||.|+|....-... -+  -.+.++++.++.+...
T Consensus       191 ~l~~~DiVInaTp~Gm~~~~~~pi--~~~~l~~~~~v~DlvY  230 (283)
T 3jyo_A          191 VIAAADGVVNATPMGMPAHPGTAF--DVSCLTKDHWVGDVVY  230 (283)
T ss_dssp             HHHHSSEEEECSSTTSTTSCSCSS--CGGGCCTTCEEEECCC
T ss_pred             HHhcCCEEEECCCCCCCCCCCCCC--CHHHhCCCCEEEEecC
Confidence            356889999999853311000 01  1234667777776554

>3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida}

Probab=97.04  E-value=0.0013  Score=60.22  Aligned_cols=95  Identities=13%  Similarity=0.085  Sum_probs=62.7

Q ss_pred             ccEEEEECCCcchHHHHHHHHHCCC-eeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhccccc--ccCcCC
Q psy9056         220 VKTVAVLGAGLMGAGIAHVTVDKGY-NTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVG--TLSYDP  296 (359)
Q Consensus       220 ~~kI~IIG~G~mG~~iA~~l~~~G~-~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~--~~~~~~  296 (359)
                      -+++.|+|+|-+|.+++..|++.|. +|++++|++++.+...+.+..        +            .+..  .++++.
T Consensus       120 ~k~~lvlGaGg~~~aia~~L~~~G~~~v~i~~R~~~~a~~la~~~~~--------~------------~~~~~~~~~l~~  179 (272)
T 3pwz_A          120 NRRVLLLGAGGAVRGALLPFLQAGPSELVIANRDMAKALALRNELDH--------S------------RLRISRYEALEG  179 (272)
T ss_dssp             TSEEEEECCSHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHCC--------T------------TEEEECSGGGTT
T ss_pred             CCEEEEECccHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhcc--------C------------CeeEeeHHHhcc
Confidence            3799999999999999999999996 999999999987765443221        0            0111  112222


Q ss_pred             CCCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCC
Q psy9056         297 FKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSA  337 (359)
Q Consensus       297 l~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~  337 (359)
                       .++|+||.|+|.........+.  .+.++++.++.+....
T Consensus       180 -~~~DivInaTp~gm~~~~~~i~--~~~l~~~~~V~DlvY~  217 (272)
T 3pwz_A          180 -QSFDIVVNATSASLTADLPPLP--ADVLGEAALAYELAYG  217 (272)
T ss_dssp             -CCCSEEEECSSGGGGTCCCCCC--GGGGTTCSEEEESSCS
T ss_pred             -cCCCEEEECCCCCCCCCCCCCC--HHHhCcCCEEEEeecC
Confidence             6899999999864321000011  1345678888776554

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=97.02  E-value=0.001  Score=63.46  Aligned_cols=99  Identities=17%  Similarity=0.150  Sum_probs=62.6

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CCCCC
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DPFKN  299 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~l~~  299 (359)
                      ++|.|+|+|.+|..++..+...|.+|+++|+++++++.+.+......    ..-..+.             .++ +.+.+
T Consensus       168 ~~VlViGaGgvG~~aa~~a~~~Ga~V~v~dr~~~r~~~~~~~~~~~~----~~~~~~~-------------~~~~~~~~~  230 (361)
T 1pjc_A          168 GKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGSRV----ELLYSNS-------------AEIETAVAE  230 (361)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGGS----EEEECCH-------------HHHHHHHHT
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHhhCcee----EeeeCCH-------------HHHHHHHcC
Confidence            79999999999999999999999999999999998776543221100    0000000             011 23468


Q ss_pred             ccEEEEcccCCHHHHHH-HHHHHHHhCCCCcEEEEcCC
Q psy9056         300 ADMVIEAVFEDINIKHQ-VIKEIEAVVPPHCVVATNTS  336 (359)
Q Consensus       300 aD~Vi~avp~~~~~k~~-v~~~l~~~~~~~~ii~s~ts  336 (359)
                      +|+||.|++........ +.+...+.++++.+|++.+.
T Consensus       231 ~DvVI~~~~~~~~~~~~li~~~~~~~~~~g~~ivdv~~  268 (361)
T 1pjc_A          231 ADLLIGAVLVPGRRAPILVPASLVEQMRTGSVIVDVAV  268 (361)
T ss_dssp             CSEEEECCCCTTSSCCCCBCHHHHTTSCTTCEEEETTC
T ss_pred             CCEEEECCCcCCCCCCeecCHHHHhhCCCCCEEEEEec
Confidence            99999999643210000 12333455677887776543

>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}

Probab=97.01  E-value=0.00097  Score=63.63  Aligned_cols=91  Identities=20%  Similarity=0.204  Sum_probs=57.2

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CCCCC
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DPFKN  299 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~l~~  299 (359)
                      +||.|+|+|.+|+.++..|++ .++|.++|++.++++++....        ..-.++          +.-..++ +.+++
T Consensus        17 mkilvlGaG~vG~~~~~~L~~-~~~v~~~~~~~~~~~~~~~~~--------~~~~~d----------~~d~~~l~~~~~~   77 (365)
T 3abi_A           17 MKVLILGAGNIGRAIAWDLKD-EFDVYIGDVNNENLEKVKEFA--------TPLKVD----------ASNFDKLVEVMKE   77 (365)
T ss_dssp             CEEEEECCSHHHHHHHHHHTT-TSEEEEEESCHHHHHHHTTTS--------EEEECC----------TTCHHHHHHHHTT
T ss_pred             cEEEEECCCHHHHHHHHHHhc-CCCeEEEEcCHHHHHHHhccC--------CcEEEe----------cCCHHHHHHHHhC
Confidence            379999999999999998865 589999999998876542210        000000          0000111 24688


Q ss_pred             ccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcC
Q psy9056         300 ADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNT  335 (359)
Q Consensus       300 aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~t  335 (359)
                      +|+||.|+|.....  .+.+...+   .++-+++.+
T Consensus        78 ~DvVi~~~p~~~~~--~v~~~~~~---~g~~yvD~s  108 (365)
T 3abi_A           78 FELVIGALPGFLGF--KSIKAAIK---SKVDMVDVS  108 (365)
T ss_dssp             CSEEEECCCGGGHH--HHHHHHHH---HTCEEEECC
T ss_pred             CCEEEEecCCcccc--hHHHHHHh---cCcceEeee
Confidence            99999999876542  45544333   345455544

>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A

Probab=97.01  E-value=0.0013  Score=58.38  Aligned_cols=95  Identities=8%  Similarity=-0.050  Sum_probs=59.7

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc--CCCC
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY--DPFK  298 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~l~  298 (359)
                      ++|.|+|+|.+|..++..|.+.|+ |+++|++++.++.+.   . ...  .-.+..+.            ...+  ..+.
T Consensus        10 ~~viI~G~G~~G~~la~~L~~~g~-v~vid~~~~~~~~~~---~-~~~--~i~gd~~~------------~~~l~~a~i~   70 (234)
T 2aef_A           10 RHVVICGWSESTLECLRELRGSEV-FVLAEDENVRKKVLR---S-GAN--FVHGDPTR------------VSDLEKANVR   70 (234)
T ss_dssp             CEEEEESCCHHHHHHHHHSTTSEE-EEEESCGGGHHHHHH---T-TCE--EEESCTTC------------HHHHHHTTCT
T ss_pred             CEEEEECCChHHHHHHHHHHhCCe-EEEEECCHHHHHHHh---c-CCe--EEEcCCCC------------HHHHHhcCcc
Confidence            589999999999999999999999 999999998765432   0 000  00000000            0011  2378


Q ss_pred             CccEEEEcccCCHHHHHHHHHHHHHhCCCC-cEEEEcCC
Q psy9056         299 NADMVIEAVFEDINIKHQVIKEIEAVVPPH-CVVATNTS  336 (359)
Q Consensus       299 ~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~-~ii~s~ts  336 (359)
                      ++|.||.+++++..  ......+.+.+.++ .||+-..+
T Consensus        71 ~ad~vi~~~~~d~~--n~~~~~~a~~~~~~~~iia~~~~  107 (234)
T 2aef_A           71 GARAVIVDLESDSE--TIHCILGIRKIDESVRIIAEAER  107 (234)
T ss_dssp             TCSEEEECCSCHHH--HHHHHHHHHHHCSSSEEEEECSS
T ss_pred             hhcEEEEcCCCcHH--HHHHHHHHHHHCCCCeEEEEECC
Confidence            99999999987642  23333333344565 56654443

>3v5n_A Oxidoreductase; structural genomics, PSI-biology, protein structure initiati nysgrc, NEW YORK structural genomics research consortium; 2.80A {Sinorhizobium meliloti}

Probab=96.98  E-value=0.0018  Score=62.99  Aligned_cols=76  Identities=9%  Similarity=0.045  Sum_probs=51.0

Q ss_pred             CCccEEEEECCCc---chHHHHHHHHHCC-CeeE--EecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccc
Q psy9056         218 TPVKTVAVLGAGL---MGAGIAHVTVDKG-YNTI--VKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGT  291 (359)
Q Consensus       218 ~~~~kI~IIG~G~---mG~~iA~~l~~~G-~~V~--l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~  291 (359)
                      |+.-||+|||+|.   ||...+..+...+ ++|+  ++|+++++.+...+.+.           +         ....+.
T Consensus        35 m~~~rvgiiG~G~~~~ig~~h~~~~~~~~~~~lva~v~d~~~~~a~~~a~~~g-----------~---------~~~~~~   94 (417)
T 3v5n_A           35 QKRIRLGMVGGGSGAFIGAVHRIAARLDDHYELVAGALSSTPEKAEASGRELG-----------L---------DPSRVY   94 (417)
T ss_dssp             CCCEEEEEESCC--CHHHHHHHHHHHHTSCEEEEEEECCSSHHHHHHHHHHHT-----------C---------CGGGBC
T ss_pred             CCcceEEEEcCCCchHHHHHHHHHHhhCCCcEEEEEEeCCCHHHHHHHHHHcC-----------C---------Cccccc
Confidence            4556999999999   9999888877776 5765  78999998766443221           0         001233


Q ss_pred             cCcC-CCC-------CccEEEEcccCCHHH
Q psy9056         292 LSYD-PFK-------NADMVIEAVFEDINI  313 (359)
Q Consensus       292 ~~~~-~l~-------~aD~Vi~avp~~~~~  313 (359)
                      +|++ .++       +.|+|++|+|.....
T Consensus        95 ~~~~~ll~~~~~~~~~vD~V~I~tp~~~H~  124 (417)
T 3v5n_A           95 SDFKEMAIREAKLKNGIEAVAIVTPNHVHY  124 (417)
T ss_dssp             SCHHHHHHHHHHCTTCCSEEEECSCTTSHH
T ss_pred             CCHHHHHhcccccCCCCcEEEECCCcHHHH
Confidence            4553 233       489999999988753

>2ixa_A Alpha-N-acetylgalactosaminidase; NAD, A-ECO conversion, hydrolase; HET: NAD; 2.3A {Flavobacterium meningosepticum} PDB: 2ixb_A*

Probab=96.96  E-value=0.0023  Score=62.68  Aligned_cols=79  Identities=16%  Similarity=0.106  Sum_probs=52.2

Q ss_pred             CCCccEEEEECCCcchHHHHHHHHHC-CCee-EEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhccccccc--
Q psy9056         217 QTPVKTVAVLGAGLMGAGIAHVTVDK-GYNT-IVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTL--  292 (359)
Q Consensus       217 ~~~~~kI~IIG~G~mG~~iA~~l~~~-G~~V-~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~--  292 (359)
                      .|+..||+|||+|.||...+..+.+. |++| .++|+++++++...+.+..       .+.          ......+  
T Consensus        17 ~~~~~rvgiIG~G~~g~~h~~~l~~~~~~~lvav~d~~~~~~~~~a~~~~~-------~g~----------~~~~~~~~~   79 (444)
T 2ixa_A           17 NPKKVRIAFIAVGLRGQTHVENMARRDDVEIVAFADPDPYMVGRAQEILKK-------NGK----------KPAKVFGNG   79 (444)
T ss_dssp             --CCEEEEEECCSHHHHHHHHHHHTCTTEEEEEEECSCHHHHHHHHHHHHH-------TTC----------CCCEEECSS
T ss_pred             CCCCceEEEEecCHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHHHHHh-------cCC----------CCCceeccC
Confidence            35556999999999999999888775 6665 5889999987765432210       010          0112223  


Q ss_pred             --CcC-CCC--CccEEEEcccCCHH
Q psy9056         293 --SYD-PFK--NADMVIEAVFEDIN  312 (359)
Q Consensus       293 --~~~-~l~--~aD~Vi~avp~~~~  312 (359)
                        |++ .++  +.|+|++|+|.+..
T Consensus        80 ~~~~~~ll~~~~vD~V~i~tp~~~h  104 (444)
T 2ixa_A           80 NDDYKNMLKDKNIDAVFVSSPWEWH  104 (444)
T ss_dssp             TTTHHHHTTCTTCCEEEECCCGGGH
T ss_pred             CCCHHHHhcCCCCCEEEEcCCcHHH
Confidence              553 344  68999999997765

>1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex, oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A* 1bdm_A* 1wze_A* 1wzi_A*

Probab=96.94  E-value=0.0032  Score=59.08  Aligned_cols=103  Identities=19%  Similarity=0.126  Sum_probs=61.1

Q ss_pred             cEEEEECC-CcchHHHHHHHHHCCC-------eeEEecCCH--HHHHHHHHHHHHhHHHHHhhccCChHHHHhhhccccc
Q psy9056         221 KTVAVLGA-GLMGAGIAHVTVDKGY-------NTIVKDSFE--KGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVG  290 (359)
Q Consensus       221 ~kI~IIG~-G~mG~~iA~~l~~~G~-------~V~l~d~~~--~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~  290 (359)
                      +||.|+|+ |.+|+.++..|+..|+       +|+++|+++  ++++.....+.+        ...      .....+..
T Consensus         5 mkVlVtGaaGfIG~~l~~~L~~~g~~~~~~~~ev~l~D~~~~~~~~~g~~~dl~~--------~~~------~~~~di~~   70 (327)
T 1y7t_A            5 VRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELED--------CAF------PLLAGLEA   70 (327)
T ss_dssp             EEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHT--------TTC------TTEEEEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCCCCCCCEEEEEeCCCchhhccchhhhhhc--------ccc------cccCCeEe
Confidence            48999997 9999999999999996       899999875  222211111111        000      01112333


Q ss_pred             ccCc-CCCCCccEEEEccc-----C---------CHHHHHHHHHHHHHhCCCCcEEEEcCCC
Q psy9056         291 TLSY-DPFKNADMVIEAVF-----E---------DINIKHQVIKEIEAVVPPHCVVATNTSA  337 (359)
Q Consensus       291 ~~~~-~~l~~aD~Vi~avp-----~---------~~~~k~~v~~~l~~~~~~~~ii~s~ts~  337 (359)
                      .++. ++++++|+||.+.-     .         +....+.+++.+.++.+++..++..++.
T Consensus        71 ~~~~~~a~~~~D~Vih~Ag~~~~~~~~~~~~~~~Nv~~t~~l~~a~~~~~~~~~~vvv~snp  132 (327)
T 1y7t_A           71 TDDPKVAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKKDVKVLVVGNP  132 (327)
T ss_dssp             ESCHHHHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSS
T ss_pred             ccChHHHhCCCCEEEECCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEeCCc
Confidence            3343 56889999998652     1         1223445667777775355544444444

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=96.91  E-value=0.002  Score=58.13  Aligned_cols=33  Identities=21%  Similarity=0.291  Sum_probs=31.4

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCC-eeEEecCCH
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGY-NTIVKDSFE  253 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~-~V~l~d~~~  253 (359)
                      ++|.|||+|.+|+.++..|+..|. +|+++|.+.
T Consensus        32 ~~VlVvG~Gg~G~~va~~La~~Gv~~i~lvD~d~   65 (249)
T 1jw9_B           32 SRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDT   65 (249)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred             CeEEEEeeCHHHHHHHHHHHHcCCCeEEEEcCCC
Confidence            689999999999999999999997 899999997

>1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5

Probab=96.89  E-value=0.0018  Score=59.69  Aligned_cols=101  Identities=16%  Similarity=0.094  Sum_probs=62.8

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcCCCCCc
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPFKNA  300 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~a  300 (359)
                      +++.|+|+|.+|.+++..|++.| +|++++++.++++...+.+....      +. .. .   .  .+...+-.+.+.++
T Consensus       129 k~vlV~GaGgiG~aia~~L~~~G-~V~v~~r~~~~~~~l~~~~~~~~------~~-~~-~---~--~~d~~~~~~~~~~~  194 (287)
T 1nvt_A          129 KNIVIYGAGGAARAVAFELAKDN-NIIIANRTVEKAEALAKEIAEKL------NK-KF-G---E--EVKFSGLDVDLDGV  194 (287)
T ss_dssp             CEEEEECCSHHHHHHHHHHTSSS-EEEEECSSHHHHHHHHHHHHHHH------TC-CH-H---H--HEEEECTTCCCTTC
T ss_pred             CEEEEECchHHHHHHHHHHHHCC-CEEEEECCHHHHHHHHHHHhhhc------cc-cc-c---e--eEEEeeHHHhhCCC
Confidence            68999999999999999999999 99999999988776554433110      00 00 0   0  01111113567889


Q ss_pred             cEEEEcccCCHHHH-H-HHHHHHHHhCCCCcEEEEcCC
Q psy9056         301 DMVIEAVFEDINIK-H-QVIKEIEAVVPPHCVVATNTS  336 (359)
Q Consensus       301 D~Vi~avp~~~~~k-~-~v~~~l~~~~~~~~ii~s~ts  336 (359)
                      |+||.+++....-. . ..+. -.+.++++.++++...
T Consensus       195 DilVn~ag~~~~~~~~~~~~~-~~~~l~~~~~v~Dv~y  231 (287)
T 1nvt_A          195 DIIINATPIGMYPNIDVEPIV-KAEKLREDMVVMDLIY  231 (287)
T ss_dssp             CEEEECSCTTCTTCCSSCCSS-CSTTCCSSSEEEECCC
T ss_pred             CEEEECCCCCCCCCCCCCCCC-CHHHcCCCCEEEEeee
Confidence            99999987543100 0 0000 0234567787776654

>4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}

Probab=96.88  E-value=0.00073  Score=61.99  Aligned_cols=102  Identities=11%  Similarity=0.044  Sum_probs=59.9

Q ss_pred             CCccEEEEEC-CCcchHHHHHHHHHC-CCeeEE-ecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc
Q psy9056         218 TPVKTVAVLG-AGLMGAGIAHVTVDK-GYNTIV-KDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY  294 (359)
Q Consensus       218 ~~~~kI~IIG-~G~mG~~iA~~l~~~-G~~V~l-~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~  294 (359)
                      |.|.||+|+| .|.||..++..+.+. +++++. +|++......            ...+.+.     .....+.+++|+
T Consensus         5 M~mikV~V~Ga~G~MG~~i~~~l~~~~~~eLv~~~d~~~~~~~G------------~d~gel~-----g~~~gv~v~~dl   67 (272)
T 4f3y_A            5 MSSMKIAIAGASGRMGRMLIEAVLAAPDATLVGALDRTGSPQLG------------QDAGAFL-----GKQTGVALTDDI   67 (272)
T ss_dssp             -CCEEEEESSTTSHHHHHHHHHHHHCTTEEEEEEBCCTTCTTTT------------SBTTTTT-----TCCCSCBCBCCH
T ss_pred             ccccEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEEecCccccc------------ccHHHHh-----CCCCCceecCCH
Confidence            6778999999 799999999988876 566655 6887532100            0000000     000134445566


Q ss_pred             C-CCCCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCcHH
Q psy9056         295 D-PFKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPIT  341 (359)
Q Consensus       295 ~-~l~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~  341 (359)
                      + .+.++|+||++++  ++.....+....+   .+.-+++.|++++.+
T Consensus        68 ~~ll~~~DVVIDfT~--p~a~~~~~~~al~---~G~~vVigTTG~s~~  110 (272)
T 4f3y_A           68 ERVCAEADYLIDFTL--PEGTLVHLDAALR---HDVKLVIGTTGFSEP  110 (272)
T ss_dssp             HHHHHHCSEEEECSC--HHHHHHHHHHHHH---HTCEEEECCCCCCHH
T ss_pred             HHHhcCCCEEEEcCC--HHHHHHHHHHHHH---cCCCEEEECCCCCHH
Confidence            3 4678999999985  3323344444333   345455667777655

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=96.88  E-value=0.0017  Score=63.98  Aligned_cols=41  Identities=22%  Similarity=0.285  Sum_probs=37.4

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHH
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLG  261 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~  261 (359)
                      +||-|+|+|.+|..+|..|...||+|+++|.|+++++.+..
T Consensus         4 M~iiI~G~G~vG~~la~~L~~~~~~v~vId~d~~~~~~~~~   44 (461)
T 4g65_A            4 MKIIILGAGQVGGTLAENLVGENNDITIVDKDGDRLRELQD   44 (461)
T ss_dssp             EEEEEECCSHHHHHHHHHTCSTTEEEEEEESCHHHHHHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHH
Confidence            58999999999999999999999999999999998876543

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=96.85  E-value=0.00072  Score=65.55  Aligned_cols=39  Identities=21%  Similarity=0.152  Sum_probs=36.1

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHH
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARG  259 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~  259 (359)
                      .+|+|+|+|.+|..++..+...|.+|+++|+++++++.+
T Consensus       173 ~~V~ViGaG~iG~~aa~~a~~~Ga~V~v~D~~~~~~~~~  211 (401)
T 1x13_A          173 AKVMVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQV  211 (401)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCGGGHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHH
Confidence            689999999999999999999999999999999877654

>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A*

Probab=96.84  E-value=0.00064  Score=62.58  Aligned_cols=92  Identities=16%  Similarity=0.113  Sum_probs=59.2

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCC-eeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CCCC
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGY-NTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DPFK  298 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~-~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~l~  298 (359)
                      ++|.|+|+|.+|.+++..|.+.|. +|++++|++++.+....           ..           .... ..+. +.+.
T Consensus       118 k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~~~a~~la~-----------~~-----------~~~~-~~~~~~~~~  174 (277)
T 3don_A          118 AYILILGAGGASKGIANELYKIVRPTLTVANRTMSRFNNWSL-----------NI-----------NKIN-LSHAESHLD  174 (277)
T ss_dssp             CCEEEECCSHHHHHHHHHHHTTCCSCCEEECSCGGGGTTCCS-----------CC-----------EEEC-HHHHHHTGG
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHH-----------hc-----------cccc-HhhHHHHhc
Confidence            689999999999999999999999 99999999876443211           00           0000 1112 3478


Q ss_pred             CccEEEEcccCCHHHH-HHHHHHHHHhCCCCcEEEEcCCC
Q psy9056         299 NADMVIEAVFEDINIK-HQVIKEIEAVVPPHCVVATNTSA  337 (359)
Q Consensus       299 ~aD~Vi~avp~~~~~k-~~v~~~l~~~~~~~~ii~s~ts~  337 (359)
                      ++|+||.|+|....-. ...+.  .+.++++.++++..+.
T Consensus       175 ~aDiVInaTp~Gm~~~~~~~l~--~~~l~~~~~V~D~vY~  212 (277)
T 3don_A          175 EFDIIINTTPAGMNGNTDSVIS--LNRLASHTLVSDIVYN  212 (277)
T ss_dssp             GCSEEEECCC-------CCSSC--CTTCCSSCEEEESCCS
T ss_pred             CCCEEEECccCCCCCCCcCCCC--HHHcCCCCEEEEecCC
Confidence            8999999998643210 00111  2346788888876654

>3e82_A Putative oxidoreductase; NAD, GFO/IDH/MOCA family, PSI-2, NYSGXRC, 11136F, structural genomics, protein structure initiative; 2.04A {Klebsiella pneumoniae subsp}

Probab=96.78  E-value=0.002  Score=61.41  Aligned_cols=70  Identities=20%  Similarity=0.249  Sum_probs=47.3

Q ss_pred             CccEEEEECCCcchHH-HHHHHHHC-CCeeE-EecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcC
Q psy9056         219 PVKTVAVLGAGLMGAG-IAHVTVDK-GYNTI-VKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYD  295 (359)
Q Consensus       219 ~~~kI~IIG~G~mG~~-iA~~l~~~-G~~V~-l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~  295 (359)
                      ++.||+|||+|.||.. .+..+.+. +++|+ ++|+++++++..             .            ......+|++
T Consensus         6 ~~~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~-------------~------------~~~~~~~~~~   60 (364)
T 3e82_A            6 NTINIALIGYGFVGKTFHAPLIRSVPGLNLAFVASRDEEKVKRD-------------L------------PDVTVIASPE   60 (364)
T ss_dssp             -CEEEEEECCSHHHHHTHHHHHHTSTTEEEEEEECSCHHHHHHH-------------C------------TTSEEESCHH
T ss_pred             CcceEEEECCCHHHHHHHHHHHhhCCCeEEEEEEcCCHHHHHhh-------------C------------CCCcEECCHH
Confidence            4468999999999997 56666655 67764 889998754310             0            1233445553


Q ss_pred             -CCC--CccEEEEcccCCHHH
Q psy9056         296 -PFK--NADMVIEAVFEDINI  313 (359)
Q Consensus       296 -~l~--~aD~Vi~avp~~~~~  313 (359)
                       .++  +.|+|++|+|.+...
T Consensus        61 ~ll~~~~~D~V~i~tp~~~H~   81 (364)
T 3e82_A           61 AAVQHPDVDLVVIASPNATHA   81 (364)
T ss_dssp             HHHTCTTCSEEEECSCGGGHH
T ss_pred             HHhcCCCCCEEEEeCChHHHH
Confidence             344  789999999987753

>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*

Probab=96.77  E-value=0.0048  Score=53.83  Aligned_cols=39  Identities=13%  Similarity=0.190  Sum_probs=34.3

Q ss_pred             ccEEEEECC-CcchHHHHHHHH-HCCCeeEEecCCHH-HHHH
Q psy9056         220 VKTVAVLGA-GLMGAGIAHVTV-DKGYNTIVKDSFEK-GLAR  258 (359)
Q Consensus       220 ~~kI~IIG~-G~mG~~iA~~l~-~~G~~V~l~d~~~~-~l~~  258 (359)
                      |++|.|.|+ |.+|..++..|+ +.|++|++++++++ +++.
T Consensus         5 mk~vlVtGasg~iG~~~~~~l~~~~g~~V~~~~r~~~~~~~~   46 (221)
T 3r6d_A            5 YXYITILGAAGQIAQXLTATLLTYTDMHITLYGRQLKTRIPP   46 (221)
T ss_dssp             CSEEEEESTTSHHHHHHHHHHHHHCCCEEEEEESSHHHHSCH
T ss_pred             EEEEEEEeCCcHHHHHHHHHHHhcCCceEEEEecCccccchh
Confidence            566999995 999999999999 89999999999987 5443

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=96.72  E-value=0.01  Score=52.24  Aligned_cols=41  Identities=20%  Similarity=0.117  Sum_probs=35.4

Q ss_pred             CCccEEEEECC-CcchHHHHHHHHHCCCeeEEecCCHHHHHH
Q psy9056         218 TPVKTVAVLGA-GLMGAGIAHVTVDKGYNTIVKDSFEKGLAR  258 (359)
Q Consensus       218 ~~~~kI~IIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~  258 (359)
                      ..-++|.|.|+ |.+|..++..|++.|++|++++|+++.++.
T Consensus        19 l~~~~ilVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~   60 (236)
T 3e8x_A           19 FQGMRVLVVGANGKVARYLLSELKNKGHEPVAMVRNEEQGPE   60 (236)
T ss_dssp             --CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHH
T ss_pred             cCCCeEEEECCCChHHHHHHHHHHhCCCeEEEEECChHHHHH
Confidence            44468999997 999999999999999999999999887554

>3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.79A {Sinorhizobium meliloti}

Probab=96.72  E-value=0.0053  Score=58.41  Aligned_cols=73  Identities=11%  Similarity=0.036  Sum_probs=49.4

Q ss_pred             CCccEEEEECCCcchH-HHHHHHHHCCCee-EEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcC
Q psy9056         218 TPVKTVAVLGAGLMGA-GIAHVTVDKGYNT-IVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYD  295 (359)
Q Consensus       218 ~~~~kI~IIG~G~mG~-~iA~~l~~~G~~V-~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~  295 (359)
                      |+.-||+|||+|.+|. .++..+...+.+| .++|+++++.+...+.+                      +.....+|++
T Consensus        24 m~~irvgiiG~G~~~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~----------------------~~~~~~~~~~   81 (361)
T 3u3x_A           24 MDELRFAAVGLNHNHIYGQVNCLLRAGARLAGFHEKDDALAAEFSAVY----------------------ADARRIATAE   81 (361)
T ss_dssp             --CCEEEEECCCSTTHHHHHHHHHHTTCEEEEEECSCHHHHHHHHHHS----------------------SSCCEESCHH
T ss_pred             ccCcEEEEECcCHHHHHHHHHHhhcCCcEEEEEEcCCHHHHHHHHHHc----------------------CCCcccCCHH
Confidence            3446899999999995 5666777788884 57899998866543211                      1123445553


Q ss_pred             C-C--CCccEEEEcccCCHH
Q psy9056         296 P-F--KNADMVIEAVFEDIN  312 (359)
Q Consensus       296 ~-l--~~aD~Vi~avp~~~~  312 (359)
                      + +  .+.|+|++|+|....
T Consensus        82 ~ll~~~~vD~V~I~tp~~~H  101 (361)
T 3u3x_A           82 EILEDENIGLIVSAAVSSER  101 (361)
T ss_dssp             HHHTCTTCCEEEECCCHHHH
T ss_pred             HHhcCCCCCEEEEeCChHHH
Confidence            3 3  458999999997664

>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum}

Probab=96.71  E-value=0.0011  Score=61.15  Aligned_cols=39  Identities=15%  Similarity=0.079  Sum_probs=35.8

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCC-eeEEecCCHHHHHHH
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGY-NTIVKDSFEKGLARG  259 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~-~V~l~d~~~~~l~~~  259 (359)
                      +++.|+|+|-+|.+++..|.+.|. +|++++|++++.+..
T Consensus       123 k~vlvlGaGGaaraia~~L~~~G~~~v~v~nRt~~ka~~L  162 (282)
T 3fbt_A          123 NICVVLGSGGAARAVLQYLKDNFAKDIYVVTRNPEKTSEI  162 (282)
T ss_dssp             SEEEEECSSTTHHHHHHHHHHTTCSEEEEEESCHHHHHHH
T ss_pred             CEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHH
Confidence            799999999999999999999998 999999999876653

>3dty_A Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetramer, PSI-2, 11131, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Pseudomonas syringae PV}

Probab=96.70  E-value=0.0034  Score=60.47  Aligned_cols=76  Identities=14%  Similarity=0.017  Sum_probs=52.2

Q ss_pred             CCccEEEEECCCc---chHHHHHHHHHCC-CeeE--EecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccc
Q psy9056         218 TPVKTVAVLGAGL---MGAGIAHVTVDKG-YNTI--VKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGT  291 (359)
Q Consensus       218 ~~~~kI~IIG~G~---mG~~iA~~l~~~G-~~V~--l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~  291 (359)
                      |+.-||+|||+|.   ||...+..+...+ ++|+  ++|+++++.+...+...           +.         .....
T Consensus        10 m~~~rvgiiG~G~~~~ig~~h~~~~~~~~~~~lva~v~d~~~~~a~~~a~~~g-----------~~---------~~~~~   69 (398)
T 3dty_A           10 PQPIRWAMVGGGSQSQIGYIHRCAALRDNTFVLVAGAFDIDPIRGSAFGEQLG-----------VD---------SERCY   69 (398)
T ss_dssp             CSCEEEEEEECCTTCSSHHHHHHHHHGGGSEEEEEEECCSSHHHHHHHHHHTT-----------CC---------GGGBC
T ss_pred             cCcceEEEEcCCccchhHHHHHHHHhhCCCeEEEEEEeCCCHHHHHHHHHHhC-----------CC---------cceee
Confidence            5557999999999   9999988887765 6766  67999988765433111           00         01234


Q ss_pred             cCcCC-C-------CCccEEEEcccCCHHH
Q psy9056         292 LSYDP-F-------KNADMVIEAVFEDINI  313 (359)
Q Consensus       292 ~~~~~-l-------~~aD~Vi~avp~~~~~  313 (359)
                      +|+++ +       .+.|+|++|+|.....
T Consensus        70 ~~~~~ll~~~~~~~~~vD~V~i~tp~~~H~   99 (398)
T 3dty_A           70 ADYLSMFEQEARRADGIQAVSIATPNGTHY   99 (398)
T ss_dssp             SSHHHHHHHHTTCTTCCSEEEEESCGGGHH
T ss_pred             CCHHHHHhcccccCCCCCEEEECCCcHHHH
Confidence            45532 3       3489999999988753

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=96.69  E-value=0.00098  Score=64.16  Aligned_cols=39  Identities=18%  Similarity=0.172  Sum_probs=35.8

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHH
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARG  259 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~  259 (359)
                      ++|+|+|+|.+|..++..+...|.+|+++|+++++++.+
T Consensus       173 ~~V~ViGaG~iG~~aa~~a~~~Ga~V~~~d~~~~~~~~~  211 (384)
T 1l7d_A          173 ARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQV  211 (384)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence            699999999999999999999999999999998876654

>3gdo_A Uncharacterized oxidoreductase YVAA; structural genomics, putative oxidoreductase YVAA, oxidoredu PSI-2, protein structure initiative; 2.03A {Bacillus subtilis subsp} PDB: 3gfg_A

Probab=96.68  E-value=0.0043  Score=58.90  Aligned_cols=70  Identities=16%  Similarity=0.154  Sum_probs=47.4

Q ss_pred             CccEEEEECCCcchHH-HHHHHHHC-CCee-EEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcC
Q psy9056         219 PVKTVAVLGAGLMGAG-IAHVTVDK-GYNT-IVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYD  295 (359)
Q Consensus       219 ~~~kI~IIG~G~mG~~-iA~~l~~~-G~~V-~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~  295 (359)
                      ++.||+|||+|.||.. .+..+.+. +++| .++|++++++...                         .......+|++
T Consensus         4 ~~~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~-------------------------~~~~~~~~~~~   58 (358)
T 3gdo_A            4 DTIKVGILGYGLSGSVFHGPLLDVLDEYQISKIMTSRTEEVKRD-------------------------FPDAEVVHELE   58 (358)
T ss_dssp             TCEEEEEECCSHHHHHTTHHHHTTCTTEEEEEEECSCHHHHHHH-------------------------CTTSEEESSTH
T ss_pred             CcceEEEEccCHHHHHHHHHHHhhCCCeEEEEEEcCCHHHHHhh-------------------------CCCCceECCHH
Confidence            4469999999999997 56666554 6676 5789998652210                         01233455663


Q ss_pred             -CCC--CccEEEEcccCCHHH
Q psy9056         296 -PFK--NADMVIEAVFEDINI  313 (359)
Q Consensus       296 -~l~--~aD~Vi~avp~~~~~  313 (359)
                       .++  +.|+|++|+|.+...
T Consensus        59 ~ll~~~~vD~V~i~tp~~~H~   79 (358)
T 3gdo_A           59 EITNDPAIELVIVTTPSGLHY   79 (358)
T ss_dssp             HHHTCTTCCEEEECSCTTTHH
T ss_pred             HHhcCCCCCEEEEcCCcHHHH
Confidence             344  789999999988753

>3moi_A Probable dehydrogenase; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics; 2.50A {Bordetella bronchiseptica}

Probab=96.67  E-value=0.0033  Score=60.33  Aligned_cols=69  Identities=13%  Similarity=-0.016  Sum_probs=49.6

Q ss_pred             cEEEEECCC-cchHHHHHHHHHC-CCee-EEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcCC-
Q psy9056         221 KTVAVLGAG-LMGAGIAHVTVDK-GYNT-IVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDP-  296 (359)
Q Consensus       221 ~kI~IIG~G-~mG~~iA~~l~~~-G~~V-~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-  296 (359)
                      .||+|||+| .||..++..+.+. +++| .++|+++++.+...+..                       .+...+|+++ 
T Consensus         3 ~rigiiG~G~~~~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~-----------------------g~~~~~~~~el   59 (387)
T 3moi_A            3 IRFGICGLGFAGSVLMAPAMRHHPDAQIVAACDPNEDVRERFGKEY-----------------------GIPVFATLAEM   59 (387)
T ss_dssp             EEEEEECCSHHHHTTHHHHHHHCTTEEEEEEECSCHHHHHHHHHHH-----------------------TCCEESSHHHH
T ss_pred             eEEEEEeCCHHHHHHHHHHHHhCCCeEEEEEEeCCHHHHHHHHHHc-----------------------CCCeECCHHHH
Confidence            489999999 9999999888876 5565 47899998766543211                       1223445533 


Q ss_pred             C--CCccEEEEcccCCHH
Q psy9056         297 F--KNADMVIEAVFEDIN  312 (359)
Q Consensus       297 l--~~aD~Vi~avp~~~~  312 (359)
                      +  .+.|+|++|+|.+..
T Consensus        60 l~~~~vD~V~i~tp~~~H   77 (387)
T 3moi_A           60 MQHVQMDAVYIASPHQFH   77 (387)
T ss_dssp             HHHSCCSEEEECSCGGGH
T ss_pred             HcCCCCCEEEEcCCcHHH
Confidence            3  368999999998765

>3kux_A Putative oxidoreductase; oxidoreductase family, csgid, structural genomics, center FO structural genomics of infectious diseases; HET: MSE; 2.75A {Yersinia pestis}

Probab=96.63  E-value=0.0022  Score=60.75  Aligned_cols=69  Identities=16%  Similarity=0.184  Sum_probs=47.9

Q ss_pred             ccEEEEECCCcchHH-HHHHHHHC-CCeeE-EecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcCC
Q psy9056         220 VKTVAVLGAGLMGAG-IAHVTVDK-GYNTI-VKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDP  296 (359)
Q Consensus       220 ~~kI~IIG~G~mG~~-iA~~l~~~-G~~V~-l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  296 (359)
                      .-||+|||+|.||.. .+..+.+. +++|+ ++|+++++.+.             .            .......+|++.
T Consensus         7 ~~rvgiiG~G~~g~~~~~~~~~~~~~~~l~av~d~~~~~~~~-------------~------------~~~~~~~~~~~~   61 (352)
T 3kux_A            7 KIKVGLLGYGYASKTFHAPLIMGTPGLELAGVSSSDASKVHA-------------D------------WPAIPVVSDPQM   61 (352)
T ss_dssp             CEEEEEECCSHHHHHTHHHHHHTSTTEEEEEEECSCHHHHHT-------------T------------CSSCCEESCHHH
T ss_pred             CceEEEECCCHHHHHHHHHHHhhCCCcEEEEEECCCHHHHHh-------------h------------CCCCceECCHHH
Confidence            358999999999997 66677665 66764 88999876431             0            012334456633


Q ss_pred             -C--CCccEEEEcccCCHHH
Q psy9056         297 -F--KNADMVIEAVFEDINI  313 (359)
Q Consensus       297 -l--~~aD~Vi~avp~~~~~  313 (359)
                       +  .+.|+|++|+|.+...
T Consensus        62 ll~~~~vD~V~i~tp~~~H~   81 (352)
T 3kux_A           62 LFNDPSIDLIVIPTPNDTHF   81 (352)
T ss_dssp             HHHCSSCCEEEECSCTTTHH
T ss_pred             HhcCCCCCEEEEeCChHHHH
Confidence             3  4589999999988753

>1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A {Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A* 1dru_A* 1drv_A* 1drw_A*

Probab=96.61  E-value=0.005  Score=56.39  Aligned_cols=103  Identities=13%  Similarity=0.045  Sum_probs=58.2

Q ss_pred             CccEEEEECC-CcchHHHHHHHHH-CCCeeE-EecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-
Q psy9056         219 PVKTVAVLGA-GLMGAGIAHVTVD-KGYNTI-VKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-  294 (359)
Q Consensus       219 ~~~kI~IIG~-G~mG~~iA~~l~~-~G~~V~-l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-  294 (359)
                      +..||+|+|+ |.||..++..+.+ .|++|+ ++|++++....            ...+....    .....+..++++ 
T Consensus         4 ~~mkV~V~Ga~G~mG~~~~~~~~~~~~~elva~~d~~~~~~~g------------~d~~~~~g----~~~~~v~~~~dl~   67 (273)
T 1dih_A            4 ANIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLG------------SDAGELAG----AGKTGVTVQSSLD   67 (273)
T ss_dssp             CBEEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTTCTTCS------------CCTTCSSS----SSCCSCCEESCST
T ss_pred             CCcEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCchhhhh------------hhHHHHcC----CCcCCceecCCHH
Confidence            3458999998 9999999998774 478876 77887642100            00000000    000123345566 


Q ss_pred             CCCCCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCcHHH
Q psy9056         295 DPFKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPITK  342 (359)
Q Consensus       295 ~~l~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~  342 (359)
                      +.+.++|+||++++  ++.....+....   ..+.-+++.|+++..++
T Consensus        68 ~~l~~~DvVIDft~--p~~~~~~~~~a~---~~G~~vVigTtG~~~e~  110 (273)
T 1dih_A           68 AVKDDFDVFIDFTR--PEGTLNHLAFCR---QHGKGMVIGTTGFDEAG  110 (273)
T ss_dssp             TTTTSCSEEEECSC--HHHHHHHHHHHH---HTTCEEEECCCCCCHHH
T ss_pred             HHhcCCCEEEEcCC--hHHHHHHHHHHH---hCCCCEEEECCCCCHHH
Confidence            44678999998774  332334444333   33454555555776653

>4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes}

Probab=96.57  E-value=0.0033  Score=60.88  Aligned_cols=44  Identities=18%  Similarity=0.135  Sum_probs=38.0

Q ss_pred             ccEEEEECCCcchHHHHHHHHHCC---CeeEEecCCHHHHHHHHHHH
Q psy9056         220 VKTVAVLGAGLMGAGIAHVTVDKG---YNTIVKDSFEKGLARGLGQI  263 (359)
Q Consensus       220 ~~kI~IIG~G~mG~~iA~~l~~~G---~~V~l~d~~~~~l~~~~~~~  263 (359)
                      |++|.|+|+|.+|..++..+++.|   .+|+++|+++++++...+.+
T Consensus         1 M~kVlIiGaGgiG~~ia~~L~~~g~~~~~V~v~~r~~~~~~~la~~l   47 (405)
T 4ina_A            1 MAKVLQIGAGGVGGVVAHKMAMNREVFSHITLASRTLSKCQEIAQSI   47 (405)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHTCTTTCCEEEEEESCHHHHHHHHHHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCceEEEEEECCHHHHHHHHHHh
Confidence            579999999999999999999998   38999999999887765543

>2nvw_A Galactose/lactose metabolism regulatory protein GAL80; transcription, galactose metabolism, repressor; 2.10A {Kluyveromyces lactis} SCOP: c.2.1.3 d.81.1.5 PDB: 3e1k_A

Probab=96.53  E-value=0.0027  Score=62.88  Aligned_cols=76  Identities=13%  Similarity=0.105  Sum_probs=52.5

Q ss_pred             CCCccEEEEECC----CcchHHHHHHHHHC--CCee-EEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccc
Q psy9056         217 QTPVKTVAVLGA----GLMGAGIAHVTVDK--GYNT-IVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLV  289 (359)
Q Consensus       217 ~~~~~kI~IIG~----G~mG~~iA~~l~~~--G~~V-~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~  289 (359)
                      .|+..||+|||+    |.||...+..+.+.  +++| .++|+++++.+...+..          +.          ....
T Consensus        36 ~m~~irvgiIG~g~~GG~~g~~h~~~l~~~~~~~~lvav~d~~~~~a~~~a~~~----------g~----------~~~~   95 (479)
T 2nvw_A           36 SSRPIRVGFVGLTSGKSWVAKTHFLAIQQLSSQFQIVALYNPTLKSSLQTIEQL----------QL----------KHAT   95 (479)
T ss_dssp             GGCCEEEEEECCCSTTSHHHHTHHHHHHHTTTTEEEEEEECSCHHHHHHHHHHT----------TC----------TTCE
T ss_pred             CCCcCEEEEEcccCCCCHHHHHHHHHHHhcCCCeEEEEEEeCCHHHHHHHHHHc----------CC----------Ccce
Confidence            355568999999    99999999999886  6775 58899998766543211          10          0112


Q ss_pred             cccCcCC-C--CCccEEEEcccCCHH
Q psy9056         290 GTLSYDP-F--KNADMVIEAVFEDIN  312 (359)
Q Consensus       290 ~~~~~~~-l--~~aD~Vi~avp~~~~  312 (359)
                      ..+|+++ +  .+.|+|++|+|.+..
T Consensus        96 ~~~d~~ell~~~~vD~V~I~tp~~~H  121 (479)
T 2nvw_A           96 GFDSLESFAQYKDIDMIVVSVKVPEH  121 (479)
T ss_dssp             EESCHHHHHHCTTCSEEEECSCHHHH
T ss_pred             eeCCHHHHhcCCCCCEEEEcCCcHHH
Confidence            3455533 3  479999999996654

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}

Probab=96.49  E-value=0.0017  Score=56.63  Aligned_cols=36  Identities=28%  Similarity=0.338  Sum_probs=33.4

Q ss_pred             EEEEECC-CcchHHHHHHHHHCCCeeEEecCCHHHHH
Q psy9056         222 TVAVLGA-GLMGAGIAHVTVDKGYNTIVKDSFEKGLA  257 (359)
Q Consensus       222 kI~IIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~l~  257 (359)
                      ||.|.|+ |.+|..++..|++.|++|++++|+++.++
T Consensus         2 kilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~   38 (224)
T 3h2s_A            2 KIAVLGATGRAGSAIVAEARRRGHEVLAVVRDPQKAA   38 (224)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHH
T ss_pred             EEEEEcCCCHHHHHHHHHHHHCCCEEEEEEecccccc
Confidence            6999997 99999999999999999999999988654

>3upl_A Oxidoreductase; rossmann fold, NADPH binding; 1.50A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} PDB: 3upy_A*

Probab=96.48  E-value=0.011  Score=57.85  Aligned_cols=86  Identities=15%  Similarity=0.150  Sum_probs=50.8

Q ss_pred             cEEEEECCCcchHHHHHHHHHC-CCe-eEEecCCHHHHHHHHHHH-HHhHHHHHhhccC-ChHHHHhh--hcccccccCc
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDK-GYN-TIVKDSFEKGLARGLGQI-KTGLDGAVKRKKM-SALDRDRY--LASLVGTLSY  294 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~-G~~-V~l~d~~~~~l~~~~~~~-~~~l~~~~~~~~~-~~~~~~~~--~~~i~~~~~~  294 (359)
                      -||||||+|.||..++..+.+. +.+ |.++|+++++.+...... ....+    ...+ +.......  .....+++|+
T Consensus        24 IRVGIIGaG~iG~~~~~~l~~~~~veLvAV~D~~~era~~~a~~~yG~~~~----~~~~~~~~~i~~a~~~g~~~v~~D~   99 (446)
T 3upl_A           24 IRIGLIGAGEMGTDIVTQVARMQGIEVGALSARRLPNTFKAIRTAYGDEEN----AREATTESAMTRAIEAGKIAVTDDN   99 (446)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTSSSEEEEEEECSSTHHHHHHHHHHHSSSTT----EEECSSHHHHHHHHHTTCEEEESCH
T ss_pred             eEEEEECChHHHHHHHHHHhhCCCcEEEEEEeCCHHHHHHHHHHhcCCccc----cccccchhhhhhhhccCCceEECCH
Confidence            5899999999999999887654 444 567799998877654322 10000    0000 00000000  0124456777


Q ss_pred             CC-C--CCccEEEEcccCC
Q psy9056         295 DP-F--KNADMVIEAVFED  310 (359)
Q Consensus       295 ~~-l--~~aD~Vi~avp~~  310 (359)
                      +. +  .+.|+|++|+|..
T Consensus       100 eeLL~d~dIDaVviaTp~p  118 (446)
T 3upl_A          100 DLILSNPLIDVIIDATGIP  118 (446)
T ss_dssp             HHHHTCTTCCEEEECSCCH
T ss_pred             HHHhcCCCCCEEEEcCCCh
Confidence            43 4  3689999999864

>4gqa_A NAD binding oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: MSE; 2.42A {Klebsiella pneumoniae}

Probab=96.47  E-value=0.0073  Score=58.34  Aligned_cols=70  Identities=13%  Similarity=0.149  Sum_probs=49.3

Q ss_pred             EEEEECCCcchHHHHHHHHHCC---------Ce-eEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccc
Q psy9056         222 TVAVLGAGLMGAGIAHVTVDKG---------YN-TIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGT  291 (359)
Q Consensus       222 kI~IIG~G~mG~~iA~~l~~~G---------~~-V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~  291 (359)
                      ||||||+|.||...+..+.+.+         .+ |-++|++++++++..+.+.                      .-.+.
T Consensus        28 rvgiIG~G~ig~~h~~~~~~~~~~~~~~~~~~elvav~d~~~~~a~~~a~~~~----------------------~~~~y   85 (412)
T 4gqa_A           28 NIGLIGSGFMGQAHADAYRRAAMFYPDLPKRPHLYALADQDQAMAERHAAKLG----------------------AEKAY   85 (412)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHHHCTTSSSEEEEEEEECSSHHHHHHHHHHHT----------------------CSEEE
T ss_pred             eEEEEcCcHHHHHHHHHHHhccccccccCCCeEEEEEEcCCHHHHHHHHHHcC----------------------CCeEE
Confidence            8999999999998888887643         34 4577999998776543221                      11234


Q ss_pred             cCcCC-C--CCccEEEEcccCCHHH
Q psy9056         292 LSYDP-F--KNADMVIEAVFEDINI  313 (359)
Q Consensus       292 ~~~~~-l--~~aD~Vi~avp~~~~~  313 (359)
                      +|+++ +  .+.|+|++|+|.....
T Consensus        86 ~d~~~ll~~~~vD~V~I~tp~~~H~  110 (412)
T 4gqa_A           86 GDWRELVNDPQVDVVDITSPNHLHY  110 (412)
T ss_dssp             SSHHHHHHCTTCCEEEECSCGGGHH
T ss_pred             CCHHHHhcCCCCCEEEECCCcHHHH
Confidence            55533 3  4689999999987753

>1zh8_A Oxidoreductase; TM0312, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI; HET: MSE NAP; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.5

Probab=96.47  E-value=0.0092  Score=56.15  Aligned_cols=71  Identities=11%  Similarity=0.004  Sum_probs=50.5

Q ss_pred             ccEEEEECCC-cchHHHHHHHHHC--CCee-EEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcC
Q psy9056         220 VKTVAVLGAG-LMGAGIAHVTVDK--GYNT-IVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYD  295 (359)
Q Consensus       220 ~~kI~IIG~G-~mG~~iA~~l~~~--G~~V-~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~  295 (359)
                      .-||+|||+| .+|...+..+.+.  +.+| .++|+++++++...+...                      .....+|++
T Consensus        18 ~irvgiIG~G~~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~~~----------------------~~~~~~~~~   75 (340)
T 1zh8_A           18 KIRLGIVGCGIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFAKMVG----------------------NPAVFDSYE   75 (340)
T ss_dssp             CEEEEEECCSHHHHHTHHHHHHTTTTTEEEEEEECSSHHHHHHHHHHHS----------------------SCEEESCHH
T ss_pred             ceeEEEEecCHHHHHHHHHHHHhCCCceEEEEEEcCCHHHHHHHHHHhC----------------------CCcccCCHH
Confidence            3589999999 8999999988876  4565 688999988765433211                      112345553


Q ss_pred             -CC--CCccEEEEcccCCHH
Q psy9056         296 -PF--KNADMVIEAVFEDIN  312 (359)
Q Consensus       296 -~l--~~aD~Vi~avp~~~~  312 (359)
                       .+  .+.|+|++|+|....
T Consensus        76 ~ll~~~~vD~V~i~tp~~~H   95 (340)
T 1zh8_A           76 ELLESGLVDAVDLTLPVELN   95 (340)
T ss_dssp             HHHHSSCCSEEEECCCGGGH
T ss_pred             HHhcCCCCCEEEEeCCchHH
Confidence             33  468999999998764

>2yyy_A Glyceraldehyde-3-phosphate dehydrogenase; glyceraldehyde 3-phosphate binding, alpha and beta proteins (A/B) class, MJ1146; HET: NAP; 1.85A {Methanocaldococcus jannaschii}

Probab=96.44  E-value=0.016  Score=54.80  Aligned_cols=108  Identities=16%  Similarity=0.094  Sum_probs=58.7

Q ss_pred             ccEEEEECCCcchHHHHHHHHHC-CCeeE-EecCCHHHHHHHHHHHHHhHHHHHhhccC-ChHHHHhh-hcccccccCc-
Q psy9056         220 VKTVAVLGAGLMGAGIAHVTVDK-GYNTI-VKDSFEKGLARGLGQIKTGLDGAVKRKKM-SALDRDRY-LASLVGTLSY-  294 (359)
Q Consensus       220 ~~kI~IIG~G~mG~~iA~~l~~~-G~~V~-l~d~~~~~l~~~~~~~~~~l~~~~~~~~~-~~~~~~~~-~~~i~~~~~~-  294 (359)
                      |.||+|+|+|.+|..++..+..+ +++|+ +.|.+++......++-.     ..-.|.. ........ -+.+.+..+. 
T Consensus         2 mikVgI~G~G~IGr~v~r~l~~~~~~evvaV~d~~~~~~~~l~~~dg-----~s~~g~~~~~~~v~~~~~~~l~v~~~~~   76 (343)
T 2yyy_A            2 PAKVLINGYGSIGKRVADAVSMQDDMEVIGVTKTKPDFEARLAVEKG-----YKLFVAIPDNERVKLFEDAGIPVEGTIL   76 (343)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHSSSEEEEEEEESSCSHHHHHHHHTT-----CCEEESSCCHHHHHHHHHTTCCCCCBGG
T ss_pred             ceEEEEECCCHHHHHHHHHHHhCCCceEEEEecCCHHHHHHHHHhcC-----CccccccCCCceeecccCCeEEECCchH
Confidence            35999999999999999998876 46755 44666554443322100     0001111 01111011 1123333333 


Q ss_pred             CCCCCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCC
Q psy9056         295 DPFKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTS  336 (359)
Q Consensus       295 ~~l~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts  336 (359)
                      +...++|+|++|+|.....  ....  ..++..++.++++.+
T Consensus        77 ~~~~~vDiV~eatg~~~s~--~~a~--~~~l~aG~~VI~sap  114 (343)
T 2yyy_A           77 DIIEDADIVVDGAPKKIGK--QNLE--NIYKPHKVKAILQGG  114 (343)
T ss_dssp             GTGGGCSEEEECCCTTHHH--HHHH--HTTTTTTCEEEECTT
T ss_pred             HhccCCCEEEECCCccccH--HHHH--HHHHHCCCEEEECCC
Confidence            3346899999999876632  2221  356666676655443

>3fhl_A Putative oxidoreductase; NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 1.93A {Bacteroides fragilis nctc 9343}

Probab=96.31  E-value=0.0053  Score=58.32  Aligned_cols=71  Identities=7%  Similarity=0.064  Sum_probs=47.8

Q ss_pred             CCccEEEEECCCcchHH-HHHHHHHC-CCee-EEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc
Q psy9056         218 TPVKTVAVLGAGLMGAG-IAHVTVDK-GYNT-IVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY  294 (359)
Q Consensus       218 ~~~~kI~IIG~G~mG~~-iA~~l~~~-G~~V-~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~  294 (359)
                      |++.||+|||+|.||.. .+..+.+. +++| .++|++++++++                         ........+|+
T Consensus         3 ~~~~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~-------------------------~~~~~~~~~~~   57 (362)
T 3fhl_A            3 LEIIKTGLAAFGMSGQVFHAPFISTNPHFELYKIVERSKELSKE-------------------------RYPQASIVRSF   57 (362)
T ss_dssp             CCCEEEEESCCSHHHHHTTHHHHHHCTTEEEEEEECSSCCGGGT-------------------------TCTTSEEESCS
T ss_pred             CCceEEEEECCCHHHHHHHHHHHhhCCCeEEEEEEcCCHHHHHH-------------------------hCCCCceECCH
Confidence            44569999999999997 66666665 6776 478999764110                         00123345666


Q ss_pred             C-CCC--CccEEEEcccCCHHH
Q psy9056         295 D-PFK--NADMVIEAVFEDINI  313 (359)
Q Consensus       295 ~-~l~--~aD~Vi~avp~~~~~  313 (359)
                      + .++  +.|+|++|+|.....
T Consensus        58 ~~ll~~~~vD~V~i~tp~~~H~   79 (362)
T 3fhl_A           58 KELTEDPEIDLIVVNTPDNTHY   79 (362)
T ss_dssp             HHHHTCTTCCEEEECSCGGGHH
T ss_pred             HHHhcCCCCCEEEEeCChHHHH
Confidence            4 344  489999999987753

>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*

Probab=96.31  E-value=0.0049  Score=57.67  Aligned_cols=99  Identities=10%  Similarity=0.069  Sum_probs=61.8

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCC-eeEEecCC---HHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccc--cC-
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGY-NTIVKDSF---EKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGT--LS-  293 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~-~V~l~d~~---~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~--~~-  293 (359)
                      +++.|+|+|-+|.+++..|++.|. +|++++|+   .++.++..+.+....      +.           .+...  ++ 
T Consensus       155 k~~lVlGaGG~g~aia~~L~~~Ga~~V~i~nR~~~~~~~a~~la~~~~~~~------~~-----------~~~~~~~~~~  217 (315)
T 3tnl_A          155 KKMTICGAGGAATAICIQAALDGVKEISIFNRKDDFYANAEKTVEKINSKT------DC-----------KAQLFDIEDH  217 (315)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHHHS------SC-----------EEEEEETTCH
T ss_pred             CEEEEECCChHHHHHHHHHHHCCCCEEEEEECCCchHHHHHHHHHHhhhhc------CC-----------ceEEeccchH
Confidence            789999999999999999999998 89999999   777666554433210      00           01100  11 


Q ss_pred             --c-CCCCCccEEEEcccCCHHHH--HHHHHHHHHhCCCCcEEEEcCCC
Q psy9056         294 --Y-DPFKNADMVIEAVFEDINIK--HQVIKEIEAVVPPHCVVATNTSA  337 (359)
Q Consensus       294 --~-~~l~~aD~Vi~avp~~~~~k--~~v~~~l~~~~~~~~ii~s~ts~  337 (359)
                        + +.+.++|+||.|+|....-.  ..-+. ....++++.++.+....
T Consensus       218 ~~l~~~l~~aDiIINaTp~Gm~~~~~~~p~~-~~~~l~~~~~V~DlvY~  265 (315)
T 3tnl_A          218 EQLRKEIAESVIFTNATGVGMKPFEGETLLP-SADMLRPELIVSDVVYK  265 (315)
T ss_dssp             HHHHHHHHTCSEEEECSSTTSTTSTTCCSCC-CGGGCCTTCEEEESCCS
T ss_pred             HHHHhhhcCCCEEEECccCCCCCCCCCCCCC-cHHHcCCCCEEEEeccC
Confidence              1 23568999999998533110  00000 12345677777765543

>3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A*

Probab=96.30  E-value=0.0051  Score=57.47  Aligned_cols=43  Identities=19%  Similarity=0.145  Sum_probs=37.1

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCC-eeEEecCC---HHHHHHHHHHH
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGY-NTIVKDSF---EKGLARGLGQI  263 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~-~V~l~d~~---~~~l~~~~~~~  263 (359)
                      +++.|+|+|-+|.+++..|++.|. +|++++|+   .++++...+.+
T Consensus       149 k~~lVlGAGGaaraia~~L~~~G~~~v~v~nRt~~~~~~a~~la~~~  195 (312)
T 3t4e_A          149 KTMVLLGAGGAATAIGAQAAIEGIKEIKLFNRKDDFFEKAVAFAKRV  195 (312)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTHHHHHHHHHHHH
T ss_pred             CEEEEECcCHHHHHHHHHHHHcCCCEEEEEECCCchHHHHHHHHHHh
Confidence            789999999999999999999998 89999999   77666654433

>4fb5_A Probable oxidoreductase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, GFO/IDH/MOCA family; 2.61A {Rhizobium etli}

Probab=96.29  E-value=0.0029  Score=60.26  Aligned_cols=74  Identities=12%  Similarity=0.076  Sum_probs=46.4

Q ss_pred             CCccEEEEECCCcchHHHHHHHHHC--------CCe-eEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhccc
Q psy9056         218 TPVKTVAVLGAGLMGAGIAHVTVDK--------GYN-TIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASL  288 (359)
Q Consensus       218 ~~~~kI~IIG~G~mG~~iA~~l~~~--------G~~-V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i  288 (359)
                      |+-=||||||+|.||..-+..+...        +.+ |-++|+++++++...+.+.                      .-
T Consensus        23 MkkirvgiIG~G~ig~~H~~a~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~g----------------------~~   80 (393)
T 4fb5_A           23 MKPLGIGLIGTGYMGKCHALAWNAVKTVFGDVERPRLVHLAEANAGLAEARAGEFG----------------------FE   80 (393)
T ss_dssp             -CCCEEEEECCSHHHHHHHHHHTTHHHHHCSSCCCEEEEEECC--TTHHHHHHHHT----------------------CS
T ss_pred             CCCccEEEEcCCHHHHHHHHHHHhhhhhhccCCCcEEEEEECCCHHHHHHHHHHhC----------------------CC
Confidence            4333899999999998766555331        345 5677999988776543221                      11


Q ss_pred             ccccCcCC-C--CCccEEEEcccCCHHH
Q psy9056         289 VGTLSYDP-F--KNADMVIEAVFEDINI  313 (359)
Q Consensus       289 ~~~~~~~~-l--~~aD~Vi~avp~~~~~  313 (359)
                      .+.+|+++ +  .+.|+|++|+|.....
T Consensus        81 ~~y~d~~ell~~~~iDaV~IatP~~~H~  108 (393)
T 4fb5_A           81 KATADWRALIADPEVDVVSVTTPNQFHA  108 (393)
T ss_dssp             EEESCHHHHHHCTTCCEEEECSCGGGHH
T ss_pred             eecCCHHHHhcCCCCcEEEECCChHHHH
Confidence            23455533 3  4689999999987754

>2f6i_A ATP-dependent CLP protease, putative; structural genomics, structural genomics conso SGC, hydrolase; 2.45A {Plasmodium falciparum} SCOP: c.14.1.1

Probab=96.28  E-value=0.0042  Score=54.90  Aligned_cols=80  Identities=11%  Similarity=0.127  Sum_probs=53.0

Q ss_pred             CCCCchHHHHHHhcCE--EEEecCCceEEeccccCCCCCC---Ccch----H--------hHHhhh--cChHHHHHHHhc
Q psy9056           1 MFAEPSLATVALACHY--RIVVKDKKTGLGLPEVMLGLLP---GAGG----T--------QRLPKL--TALPNVLDMTLT   61 (359)
Q Consensus         1 ~~a~GgG~~lalacD~--ria~~~~~~~~~~pe~~~Gi~p---~~g~----~--------~~l~~~--~g~~~a~~~~lt   61 (359)
                      |.|..+|.-|+++||.  |+|.++  +.+++.....|..-   +...    .        ..+.+.  .......+++-.
T Consensus       105 g~AAS~g~~Ia~agd~g~i~a~p~--s~i~ih~p~~~~~G~~~di~~~~~el~~~~~~i~~~ya~~~g~~~e~i~~~~~~  182 (215)
T 2f6i_A          105 GLVASMASVILASGKKGKRKSLPN--CRIMIHQPLGNAFGHPQDIEIQTKEILYLKKLLYHYLSSFTNQTVETIEKDSDR  182 (215)
T ss_dssp             EEECHHHHHHHHTSCTTCEEECTT--CEEESSCTTCSCC--------CHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHT
T ss_pred             eEhHhHHHHHHHcCCcccEEEcCC--CEEEEeccccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHhC
Confidence            3577899999999999  999988  99887765433211   0000    0        011111  223444555555


Q ss_pred             CCCCCHHHHHHcCCcceecCC
Q psy9056          62 GKTLKADKAKKMGIVDQLVEP   82 (359)
Q Consensus        62 g~~~~a~eA~~~Glv~~~~~~   82 (359)
                      +..|+++||+++||||++.++
T Consensus       183 ~~~lta~eA~e~GLiD~I~~~  203 (215)
T 2f6i_A          183 DYYMNALEAKQYGIIDEVIET  203 (215)
T ss_dssp             TCEECHHHHHHHTSCSEECCC
T ss_pred             CeecCHHHHHHCCCCCEecCC
Confidence            567899999999999999976

>3btv_A Galactose/lactose metabolism regulatory protein GAL80; eukaryotic transcription repressor, acetylation, carbohydrate metabolism; 2.10A {Saccharomyces cerevisiae} PDB: 3bts_A 3v2u_A* 3btu_A

Probab=96.23  E-value=0.0091  Score=58.32  Aligned_cols=73  Identities=10%  Similarity=0.062  Sum_probs=50.8

Q ss_pred             ccEEEEECC----CcchHHHHHHHHHC--CCee-EEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhccccccc
Q psy9056         220 VKTVAVLGA----GLMGAGIAHVTVDK--GYNT-IVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTL  292 (359)
Q Consensus       220 ~~kI~IIG~----G~mG~~iA~~l~~~--G~~V-~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~  292 (359)
                      ..||+|||+    |.||...+..+.+.  +++| .++|+++++++...+..          +.          ......+
T Consensus        20 ~irvgiIG~g~~gG~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~~----------g~----------~~~~~~~   79 (438)
T 3btv_A           20 PIRVGFVGLNAAKGWAIKTHYPAILQLSSQFQITALYSPKIETSIATIQRL----------KL----------SNATAFP   79 (438)
T ss_dssp             CEEEEEESCCTTSSSTTTTHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHT----------TC----------TTCEEES
T ss_pred             CCEEEEEcccCCCChHHHHHHHHHHhcCCCeEEEEEEeCCHHHHHHHHHHc----------CC----------CcceeeC
Confidence            358999999    99999999999887  6775 68899998766543211          00          0112344


Q ss_pred             CcCC-C--CCccEEEEcccCCHH
Q psy9056         293 SYDP-F--KNADMVIEAVFEDIN  312 (359)
Q Consensus       293 ~~~~-l--~~aD~Vi~avp~~~~  312 (359)
                      |+++ +  .+.|+|++|+|....
T Consensus        80 ~~~~ll~~~~vD~V~i~tp~~~H  102 (438)
T 3btv_A           80 TLESFASSSTIDMIVIAIQVASH  102 (438)
T ss_dssp             SHHHHHHCSSCSEEEECSCHHHH
T ss_pred             CHHHHhcCCCCCEEEEeCCcHHH
Confidence            5533 3  368999999996654

>3qwd_A ATP-dependent CLP protease proteolytic subunit; caseinolytic protease, serin-protease, hydrolase; 2.10A {Staphylococcus aureus subsp} SCOP: c.14.1.1 PDB: 3v5e_A 3v5i_A 3sta_V 3st9_A

Probab=96.19  E-value=0.0093  Score=52.13  Aligned_cols=80  Identities=19%  Similarity=0.210  Sum_probs=54.7

Q ss_pred             CCCCchHHHHHHhcC--EEEEecCCceEEeccccCCCCCCCcch---------------HhHHhhhcC--hHHHHHHHhc
Q psy9056           1 MFAEPSLATVALACH--YRIVVKDKKTGLGLPEVMLGLLPGAGG---------------TQRLPKLTA--LPNVLDMTLT   61 (359)
Q Consensus         1 ~~a~GgG~~lalacD--~ria~~~~~~~~~~pe~~~Gi~p~~g~---------------~~~l~~~~g--~~~a~~~~lt   61 (359)
                      |.|..+|.-|+++||  .|++.++  ++|.+....-|..-...-               ...+.+..|  .....+++-.
T Consensus        94 G~AaSag~~i~~ag~~g~r~~~p~--a~imiHqP~~~~~G~a~di~~~a~~l~~~~~~~~~~~a~~tG~~~e~i~~~~~~  171 (203)
T 3qwd_A           94 GMAASMGSFLLAAGAKGKRFALPN--AEVMIHQPLGGAQGQATEIEIAANHILKTREKLNRILSERTGQSIEKIQKDTDR  171 (203)
T ss_dssp             EEEETHHHHHHHTSCTTCEEECTT--CEEECCCCSSSTTTTSCHHHHHHHHHTTHHHHHHHHHHHHHCCCHHHHHHHHTS
T ss_pred             eeehhHHHHHHHcCCcCeEEEcCC--ceEEEecccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhc
Confidence            457789999999999  6999988  999887654332111000               011222223  3455566666


Q ss_pred             CCCCCHHHHHHcCCcceecCC
Q psy9056          62 GKTLKADKAKKMGIVDQLVEP   82 (359)
Q Consensus        62 g~~~~a~eA~~~Glv~~~~~~   82 (359)
                      ...++++||+++||+|+++++
T Consensus       172 d~~lta~EA~e~GliD~I~~~  192 (203)
T 3qwd_A          172 DNFLTAEEAKEYGLIDEVMVP  192 (203)
T ss_dssp             CCCEEHHHHHHHTSCSEECCC
T ss_pred             CceecHHHHHHcCCcCEecCC
Confidence            678999999999999999986

>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}

Probab=96.17  E-value=0.0032  Score=54.79  Aligned_cols=32  Identities=22%  Similarity=0.396  Sum_probs=30.3

Q ss_pred             EEEEECCCcchHHHHHHHHHCCCeeEEecCCH
Q psy9056         222 TVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFE  253 (359)
Q Consensus       222 kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~  253 (359)
                      .|.|||+|.-|.+.|..|+++|++|+++|.++
T Consensus         4 dV~IIGaGpaGL~aA~~La~~G~~V~v~Ek~~   35 (336)
T 3kkj_A            4 PIAIIGTGIAGLSAAQALTAAGHQVHLFDKSR   35 (336)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCCEEEEECCC
Confidence            59999999999999999999999999999764

>4gmf_A Yersiniabactin biosynthetic protein YBTU; rossmann fold, NADPH dependent thiazoline reductase, oxidore; HET: EPE; 1.85A {Yersinia enterocolitica subsp} PDB: 4gmg_A*

Probab=96.15  E-value=0.0069  Score=57.99  Aligned_cols=67  Identities=12%  Similarity=0.038  Sum_probs=46.5

Q ss_pred             cEEEEECCCcchHHHHHHHHHC--CCeeE-EecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CC
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDK--GYNTI-VKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DP  296 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~--G~~V~-l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~  296 (359)
                      .||+|||+| +|...+..+.+.  +++++ ++|+++++.+...+..                       ++...+|+ +.
T Consensus         8 ~rv~VvG~G-~g~~h~~a~~~~~~~~elvav~~~~~~~a~~~a~~~-----------------------gv~~~~~~~~l   63 (372)
T 4gmf_A            8 QRVLIVGAK-FGEMYLNAFMQPPEGLELVGLLAQGSARSRELAHAF-----------------------GIPLYTSPEQI   63 (372)
T ss_dssp             EEEEEECST-TTHHHHHTTSSCCTTEEEEEEECCSSHHHHHHHHHT-----------------------TCCEESSGGGC
T ss_pred             CEEEEEehH-HHHHHHHHHHhCCCCeEEEEEECCCHHHHHHHHHHh-----------------------CCCEECCHHHH
Confidence            589999999 798777777664  56655 7799998766543211                       13344566 45


Q ss_pred             CCCccEEEEcccCCH
Q psy9056         297 FKNADMVIEAVFEDI  311 (359)
Q Consensus       297 l~~aD~Vi~avp~~~  311 (359)
                      +++.|+|++++|...
T Consensus        64 ~~~~D~v~i~~p~~~   78 (372)
T 4gmf_A           64 TGMPDIACIVVRSTV   78 (372)
T ss_dssp             CSCCSEEEECCC--C
T ss_pred             hcCCCEEEEECCCcc
Confidence            688999999999764

>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}

Probab=96.11  E-value=0.0046  Score=53.99  Aligned_cols=37  Identities=19%  Similarity=0.539  Sum_probs=33.9

Q ss_pred             ccEEEEECC-CcchHHHHHHHHHCCCeeEEecCCHHHH
Q psy9056         220 VKTVAVLGA-GLMGAGIAHVTVDKGYNTIVKDSFEKGL  256 (359)
Q Consensus       220 ~~kI~IIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~l  256 (359)
                      |++|.|.|+ |.+|..++..|++.|++|++++++++..
T Consensus         4 m~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~   41 (227)
T 3dhn_A            4 VKKIVLIGASGFVGSALLNEALNRGFEVTAVVRHPEKI   41 (227)
T ss_dssp             CCEEEEETCCHHHHHHHHHHHHTTTCEEEEECSCGGGC
T ss_pred             CCEEEEEcCCchHHHHHHHHHHHCCCEEEEEEcCcccc
Confidence            579999996 9999999999999999999999998753

>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A

Probab=96.10  E-value=0.051  Score=50.10  Aligned_cols=41  Identities=22%  Similarity=0.263  Sum_probs=35.9

Q ss_pred             CccEEEEECC-CcchHHHHHHHHHCCCeeEEecCCHHHHHHH
Q psy9056         219 PVKTVAVLGA-GLMGAGIAHVTVDKGYNTIVKDSFEKGLARG  259 (359)
Q Consensus       219 ~~~kI~IIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~  259 (359)
                      +.++|.|.|+ |.+|+.++..|++.|++|++++++++..+..
T Consensus        10 ~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~   51 (342)
T 1y1p_A           10 EGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANL   51 (342)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHH
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCcccHHHH
Confidence            3468999997 9999999999999999999999998765543

>3f4l_A Putative oxidoreductase YHHX; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.00A {Escherichia coli k-12}

Probab=96.07  E-value=0.006  Score=57.50  Aligned_cols=70  Identities=11%  Similarity=0.112  Sum_probs=45.0

Q ss_pred             cEEEEECCCcchHHHHHH-H-HH-CCCeeE-EecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcC-
Q psy9056         221 KTVAVLGAGLMGAGIAHV-T-VD-KGYNTI-VKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYD-  295 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~-l-~~-~G~~V~-l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~-  295 (359)
                      .||+|||+|.||..+... + .. .+++|+ ++|+++++.+...                       ....+...+|++ 
T Consensus         3 ~rvgiiG~G~~g~~~~~~~~~~~~~~~~l~av~d~~~~~~~~~~-----------------------~~~~~~~~~~~~~   59 (345)
T 3f4l_A            3 INCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPEEQAP-----------------------IYSHIHFTSDLDE   59 (345)
T ss_dssp             EEEEEECCSHHHHHHTHHHHTTCTTTEEEEEEECSSCCGGGGSG-----------------------GGTTCEEESCTHH
T ss_pred             eEEEEEecCHHHHHHHHHHHHhcCCCeEEEEEEcCCHhHHHHHH-----------------------hcCCCceECCHHH
Confidence            589999999999874333 3 22 366766 8899986532100                       001234456664 


Q ss_pred             CCC--CccEEEEcccCCHHH
Q psy9056         296 PFK--NADMVIEAVFEDINI  313 (359)
Q Consensus       296 ~l~--~aD~Vi~avp~~~~~  313 (359)
                      .+.  +.|+|++|+|.+...
T Consensus        60 ll~~~~~D~V~i~tp~~~h~   79 (345)
T 3f4l_A           60 VLNDPDVKLVVVCTHADSHF   79 (345)
T ss_dssp             HHTCTTEEEEEECSCGGGHH
T ss_pred             HhcCCCCCEEEEcCChHHHH
Confidence            344  489999999987753

>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major}

Probab=96.07  E-value=0.0047  Score=57.12  Aligned_cols=93  Identities=17%  Similarity=0.135  Sum_probs=62.9

Q ss_pred             hhHHHHHhHhhhhhhhhcCCCCCCCCccEEEEECCCc-chHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHh
Q psy9056         194 QSKGLMGLFRAQTECKKNRLGKPQTPVKTVAVLGAGL-MGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVK  272 (359)
Q Consensus       194 ~~~~~~~af~~k~~~~~~~~~~~~~~~~kI~IIG~G~-mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~  272 (359)
                      -.-.|+-.++++...   +     ..=+++.|||.|. +|.++|..|.+.|..|+++++....++         +     
T Consensus       147 cTp~gv~~lL~~~~i---~-----l~Gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~~~~T~~l~---------l-----  204 (300)
T 4a26_A          147 CTAKGVIVLLKRCGI---E-----MAGKRAVVLGRSNIVGAPVAALLMKENATVTIVHSGTSTED---------M-----  204 (300)
T ss_dssp             HHHHHHHHHHHHHTC---C-----CTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTSCHHH---------H-----
T ss_pred             CCHHHHHHHHHHcCC---C-----CCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCCCCch---------h-----
Confidence            344566666655431   1     2237999999866 899999999999999999997433222         0     


Q ss_pred             hccCChHHHHhhhcccccccCcCCCCCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCC
Q psy9056         273 RKKMSALDRDRYLASLVGTLSYDPFKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTS  336 (359)
Q Consensus       273 ~~~~~~~~~~~~~~~i~~~~~~~~l~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts  336 (359)
                                           .+.+.++|+||-+++...-+     .  .++++++++|++...
T Consensus       205 ---------------------~~~~~~ADIVI~Avg~p~~I-----~--~~~vk~GavVIDvgi  240 (300)
T 4a26_A          205 ---------------------IDYLRTADIVIAAMGQPGYV-----K--GEWIKEGAAVVDVGT  240 (300)
T ss_dssp             ---------------------HHHHHTCSEEEECSCCTTCB-----C--GGGSCTTCEEEECCC
T ss_pred             ---------------------hhhhccCCEEEECCCCCCCC-----c--HHhcCCCcEEEEEec
Confidence                                 01267899999999753212     1  245688999887654

>2vt3_A REX, redox-sensing transcriptional repressor REX; transcriptional regulation, redox poise; HET: ATP; 2.0A {Bacillus subtilis} PDB: 2vt2_A*

Probab=96.05  E-value=0.0012  Score=58.38  Aligned_cols=85  Identities=14%  Similarity=0.203  Sum_probs=48.6

Q ss_pred             cEEEEECCCcchHHHHHH--HHHCCCee-EEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CC
Q psy9056         221 KTVAVLGAGLMGAGIAHV--TVDKGYNT-IVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DP  296 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~--l~~~G~~V-~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~  296 (359)
                      .+|+|||+|.+|..++..  +...|++| -++|.++++.....           . +          . .+...+++ +.
T Consensus        86 ~rV~IIGAG~~G~~La~~~~~~~~g~~iVg~~D~dp~k~g~~i-----------~-g----------v-~V~~~~dl~el  142 (215)
T 2vt3_A           86 TDVILIGVGNLGTAFLHYNFTKNNNTKISMAFDINESKIGTEV-----------G-G----------V-PVYNLDDLEQH  142 (215)
T ss_dssp             -CEEEECCSHHHHHHHHCC------CCEEEEEESCTTTTTCEE-----------T-T----------E-EEEEGGGHHHH
T ss_pred             CEEEEEccCHHHHHHHHHHhcccCCcEEEEEEeCCHHHHHhHh-----------c-C----------C-eeechhhHHHH
Confidence            579999999999999994  44557765 56699987522100           0 0          0 11123333 23


Q ss_pred             CCCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEE
Q psy9056         297 FKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVV  331 (359)
Q Consensus       297 l~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii  331 (359)
                      +++.|.|++|+|...  ..++...+.+. +-+.|+
T Consensus       143 i~~~D~ViIAvPs~~--~~ei~~~l~~a-Gi~~Il  174 (215)
T 2vt3_A          143 VKDESVAILTVPAVA--AQSITDRLVAL-GIKGIL  174 (215)
T ss_dssp             CSSCCEEEECSCHHH--HHHHHHHHHHT-TCCEEE
T ss_pred             HHhCCEEEEecCchh--HHHHHHHHHHc-CCCEEE
Confidence            433499999999655  34677766553 333344

>3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A

Probab=95.98  E-value=0.0034  Score=57.37  Aligned_cols=91  Identities=16%  Similarity=0.181  Sum_probs=63.8

Q ss_pred             hhhHHHHHhHhhhhhhhhcCCCCCCCCccEEEEECCC-cchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHH
Q psy9056         193 PQSKGLMGLFRAQTECKKNRLGKPQTPVKTVAVLGAG-LMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAV  271 (359)
Q Consensus       193 ~~~~~~~~af~~k~~~~~~~~~~~~~~~~kI~IIG~G-~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~  271 (359)
                      |-+-.|+-..+++..          -.=+++.|||.| .+|.++|..|.+.|..|+++++....++              
T Consensus       133 PcTp~gv~~lL~~~~----------l~Gk~vvVvG~s~iVG~plA~lL~~~gAtVtv~~~~t~~L~--------------  188 (276)
T 3ngx_A          133 PATPRAVIDIMDYYG----------YHENTVTIVNRSPVVGRPLSMMLLNRNYTVSVCHSKTKDIG--------------  188 (276)
T ss_dssp             CHHHHHHHHHHHHHT----------CCSCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCSCHH--------------
T ss_pred             CCcHHHHHHHHHHhC----------cCCCEEEEEcCChHHHHHHHHHHHHCCCeEEEEeCCcccHH--------------
Confidence            445567666666654          122799999987 5899999999999999999986432211              


Q ss_pred             hhccCChHHHHhhhcccccccCcCCCCCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCC
Q psy9056         272 KRKKMSALDRDRYLASLVGTLSYDPFKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSA  337 (359)
Q Consensus       272 ~~~~~~~~~~~~~~~~i~~~~~~~~l~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~  337 (359)
                                             +.++++|+||-+++...-+     .  .++++++++|++....
T Consensus       189 -----------------------~~~~~ADIVI~Avg~p~~I-----~--~~~vk~GavVIDvgi~  224 (276)
T 3ngx_A          189 -----------------------SMTRSSKIVVVAVGRPGFL-----N--REMVTPGSVVIDVGIN  224 (276)
T ss_dssp             -----------------------HHHHHSSEEEECSSCTTCB-----C--GGGCCTTCEEEECCCE
T ss_pred             -----------------------HhhccCCEEEECCCCCccc-----c--HhhccCCcEEEEeccC
Confidence                                   2367889999999753212     1  2456889998876643

>2czc_A Glyceraldehyde-3-phosphate dehydrogenase; glycolysis, NAD, oxidoreductase, structural genomics; HET: NAD; 2.00A {Pyrococcus horikoshii} SCOP: c.2.1.3 d.81.1.1

Probab=95.96  E-value=0.011  Score=55.62  Aligned_cols=86  Identities=13%  Similarity=0.115  Sum_probs=49.3

Q ss_pred             cEEEEECCCcchHHHHHHHHHCC-Cee-EEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhh-hcccccccCcC-C
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKG-YNT-IVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRY-LASLVGTLSYD-P  296 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G-~~V-~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~i~~~~~~~-~  296 (359)
                      -||+|+|+|.||..++..+.+.. .+| .+.|++++......++..  ++   -.+.+.. ..... -+.+.+.++++ .
T Consensus         3 irVgIiG~G~iG~~~~r~l~~~~~~elvav~d~~~~~~~~~~~~~g--~~---~~~~~~~-~v~~~~~~~~~v~~d~~~l   76 (334)
T 2czc_A            3 VKVGVNGYGTIGKRVAYAVTKQDDMELIGITKTKPDFEAYRAKELG--IP---VYAASEE-FIPRFEKEGFEVAGTLNDL   76 (334)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTCTTEEEEEEEESSCSHHHHHHHHTT--CC---EEESSGG-GHHHHHHHTCCCSCBHHHH
T ss_pred             cEEEEEeEhHHHHHHHHHHhcCCCCEEEEEEcCCHHHHHHHHHhcC--cc---ccccccc-cceeccCCceEEcCcHHHh
Confidence            58999999999999999988763 454 556887666554332110  00   0000000 00000 01223334443 3


Q ss_pred             CCCccEEEEcccCCHH
Q psy9056         297 FKNADMVIEAVFEDIN  312 (359)
Q Consensus       297 l~~aD~Vi~avp~~~~  312 (359)
                      +.++|+|++|+|....
T Consensus        77 ~~~vDvV~~aTp~~~h   92 (334)
T 2czc_A           77 LEKVDIIVDATPGGIG   92 (334)
T ss_dssp             HTTCSEEEECCSTTHH
T ss_pred             ccCCCEEEECCCcccc
Confidence            4689999999998764

>4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A

Probab=95.94  E-value=0.023  Score=56.33  Aligned_cols=37  Identities=30%  Similarity=0.462  Sum_probs=32.3

Q ss_pred             CCccEEEEECCCcchHH-HHHHHHHCCCeeEEecCCHH
Q psy9056         218 TPVKTVAVLGAGLMGAG-IAHVTVDKGYNTIVKDSFEK  254 (359)
Q Consensus       218 ~~~~kI~IIG~G~mG~~-iA~~l~~~G~~V~l~d~~~~  254 (359)
                      ..+++|.|||.|..|.+ +|..|.+.|++|.++|..+.
T Consensus        20 ~~~~~v~viGiG~sG~s~~A~~l~~~G~~V~~~D~~~~   57 (494)
T 4hv4_A           20 RRVRHIHFVGIGGAGMGGIAEVLANEGYQISGSDLAPN   57 (494)
T ss_dssp             --CCEEEEETTTSTTHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             ccCCEEEEEEEcHhhHHHHHHHHHhCCCeEEEEECCCC
Confidence            45789999999999996 89999999999999998754

>1nvm_B Acetaldehyde dehydrogenase (acylating), 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: c.2.1.3 d.81.1.1

Probab=95.94  E-value=0.0087  Score=55.87  Aligned_cols=36  Identities=14%  Similarity=0.160  Sum_probs=28.6

Q ss_pred             ccEEEEECCCcchHHHHHHHHH-C-CCe-eEEecCCHHH
Q psy9056         220 VKTVAVLGAGLMGAGIAHVTVD-K-GYN-TIVKDSFEKG  255 (359)
Q Consensus       220 ~~kI~IIG~G~mG~~iA~~l~~-~-G~~-V~l~d~~~~~  255 (359)
                      ..||+|||+|.+|..++..+.+ . +.+ |.++|+++++
T Consensus         4 ~irVaIIG~G~iG~~~~~~l~~~~~~~elvav~d~~~~~   42 (312)
T 1nvm_B            4 KLKVAIIGSGNIGTDLMIKVLRNAKYLEMGAMVGIDAAS   42 (312)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHCSSEEEEEEECSCTTC
T ss_pred             CCEEEEEcCcHHHHHHHHHHHhhCcCeEEEEEEeCChhh
Confidence            3589999999999999999866 3 444 4567998765

>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}

Probab=95.93  E-value=0.009  Score=55.98  Aligned_cols=35  Identities=20%  Similarity=0.335  Sum_probs=32.3

Q ss_pred             CccEEEEECCCcchHH-HHHHHHHCCCeeEEecCCH
Q psy9056         219 PVKTVAVLGAGLMGAG-IAHVTVDKGYNTIVKDSFE  253 (359)
Q Consensus       219 ~~~kI~IIG~G~mG~~-iA~~l~~~G~~V~l~d~~~  253 (359)
                      .+++|.|||.|.+|.+ +|..+.+.|++|.++|.++
T Consensus         3 ~~~~i~~iGiGg~Gms~~A~~L~~~G~~V~~~D~~~   38 (326)
T 3eag_A            3 AMKHIHIIGIGGTFMGGLAAIAKEAGFEVSGCDAKM   38 (326)
T ss_dssp             CCCEEEEESCCSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCcEEEEEEECHHHHHHHHHHHHhCCCEEEEEcCCC
Confidence            4789999999999996 9999999999999999875

>4h3v_A Oxidoreductase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.68A {Kribbella flavida}

Probab=95.92  E-value=0.0061  Score=57.89  Aligned_cols=71  Identities=10%  Similarity=0.128  Sum_probs=48.6

Q ss_pred             cEEEEECCCcchHHHHHHHHHCC--------Ce-eEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccc
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKG--------YN-TIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGT  291 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G--------~~-V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~  291 (359)
                      -||||||+|.||...+..+.+..        .+ |.++|+++++++...+.+.                      .-.+.
T Consensus         7 lrvgiIG~G~ig~~h~~~~~~~~~~~~~~~~~~l~av~d~~~~~a~~~a~~~g----------------------~~~~~   64 (390)
T 4h3v_A            7 LGIGLIGYAFMGAAHSQAWRSAPRFFDLPLHPDLNVLCGRDAEAVRAAAGKLG----------------------WSTTE   64 (390)
T ss_dssp             EEEEEECHHHHHHHHHHHHHHHHHHSCCSSEEEEEEEECSSHHHHHHHHHHHT----------------------CSEEE
T ss_pred             CcEEEEcCCHHHHHHHHHHHhCccccccccCceEEEEEcCCHHHHHHHHHHcC----------------------CCccc
Confidence            37999999999998877776542        24 4578999998776543221                      11234


Q ss_pred             cCcC-CC--CCccEEEEcccCCHHH
Q psy9056         292 LSYD-PF--KNADMVIEAVFEDINI  313 (359)
Q Consensus       292 ~~~~-~l--~~aD~Vi~avp~~~~~  313 (359)
                      +|++ .+  .+.|+|++|+|.....
T Consensus        65 ~d~~~ll~~~~iDaV~I~tP~~~H~   89 (390)
T 4h3v_A           65 TDWRTLLERDDVQLVDVCTPGDSHA   89 (390)
T ss_dssp             SCHHHHTTCTTCSEEEECSCGGGHH
T ss_pred             CCHHHHhcCCCCCEEEEeCChHHHH
Confidence            5553 24  4689999999987754

>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A

Probab=95.89  E-value=0.027  Score=50.74  Aligned_cols=33  Identities=21%  Similarity=0.344  Sum_probs=30.2

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCC-eeEEecCCH
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGY-NTIVKDSFE  253 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~-~V~l~d~~~  253 (359)
                      .+|.|||+|.+|+.++..|+..|. +++++|.+.
T Consensus        29 ~~VlvvG~GglG~~va~~La~~Gvg~i~lvD~d~   62 (251)
T 1zud_1           29 SQVLIIGLGGLGTPAALYLAGAGVGTLVLADDDD   62 (251)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCSEEEEECCCB
T ss_pred             CcEEEEccCHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence            699999999999999999999997 789998764

>2ejw_A HDH, homoserine dehydrogenase; NAD-dependent, oxidoreductase; 1.70A {Thermus thermophilus}

Probab=95.86  E-value=0.013  Score=55.20  Aligned_cols=66  Identities=17%  Similarity=0.125  Sum_probs=45.2

Q ss_pred             ccEEEEECCCcchHHHHHHHHHCC---------Cee-EEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccc
Q psy9056         220 VKTVAVLGAGLMGAGIAHVTVDKG---------YNT-IVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLV  289 (359)
Q Consensus       220 ~~kI~IIG~G~mG~~iA~~l~~~G---------~~V-~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~  289 (359)
                      .-||+|||+|.||..++..+.+..         .+| .++|++.++.+                + +         +.-.
T Consensus         3 ~irvgIiG~G~VG~~~~~~l~~~~~~l~~~g~~~~lvaV~d~~~~~~~----------------~-~---------~~~~   56 (332)
T 2ejw_A            3 ALKIALLGGGTVGSAFYNLVLERAEELSAFGVVPRFLGVLVRDPRKPR----------------A-I---------PQEL   56 (332)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTGGGGGGGTEEEEEEEEECSCTTSCC----------------S-S---------CGGG
T ss_pred             eeEEEEEcCCHHHHHHHHHHHhChhhHhhcCCCEEEEEEEECCHHHhh----------------c-c---------Cccc
Confidence            358999999999999999988763         344 56688754211                0 0         0112


Q ss_pred             cccCcCCCCCccEEEEcccCCH
Q psy9056         290 GTLSYDPFKNADMVIEAVFEDI  311 (359)
Q Consensus       290 ~~~~~~~l~~aD~Vi~avp~~~  311 (359)
                      +++|++++-+.|+|++|+|...
T Consensus        57 ~~~d~~~ll~iDvVve~t~~~~   78 (332)
T 2ejw_A           57 LRAEPFDLLEADLVVEAMGGVE   78 (332)
T ss_dssp             EESSCCCCTTCSEEEECCCCSH
T ss_pred             ccCCHHHHhCCCEEEECCCCcH
Confidence            4567754339999999999764

>3oa2_A WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD; 1.50A {Pseudomonas aeruginosa}

Probab=95.86  E-value=0.022  Score=53.06  Aligned_cols=37  Identities=22%  Similarity=0.258  Sum_probs=30.6

Q ss_pred             CccEEEEECC-CcchHHHHHHHHHCCCe-eEEecCCHHH
Q psy9056         219 PVKTVAVLGA-GLMGAGIAHVTVDKGYN-TIVKDSFEKG  255 (359)
Q Consensus       219 ~~~kI~IIG~-G~mG~~iA~~l~~~G~~-V~l~d~~~~~  255 (359)
                      +|.||+|||+ |.+|...+..+.+.+.+ |.++|+++++
T Consensus         2 ~mirvgiIG~gG~i~~~h~~~l~~~~~~lvav~d~~~~~   40 (318)
T 3oa2_A            2 HMKNFALIGAAGYIAPRHMRAIKDTGNCLVSAYDINDSV   40 (318)
T ss_dssp             -CCEEEEETTTSSSHHHHHHHHHHTTCEEEEEECSSCCC
T ss_pred             CceEEEEECCCcHHHHHHHHHHHhCCCEEEEEEcCCHHH
Confidence            3679999999 79999999999988876 5677988764

>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A}

Probab=95.85  E-value=0.011  Score=52.31  Aligned_cols=40  Identities=23%  Similarity=0.281  Sum_probs=34.8

Q ss_pred             CCCccEEEEECC-CcchHHHHHHHHHCC-CeeEEecCCHHHH
Q psy9056         217 QTPVKTVAVLGA-GLMGAGIAHVTVDKG-YNTIVKDSFEKGL  256 (359)
Q Consensus       217 ~~~~~kI~IIG~-G~mG~~iA~~l~~~G-~~V~l~d~~~~~l  256 (359)
                      ++.|++|.|.|+ |.+|..++..|++.| ++|++++|+++.+
T Consensus        20 ~~~mk~vlVtGatG~iG~~l~~~L~~~G~~~V~~~~R~~~~~   61 (236)
T 3qvo_A           20 QGHMKNVLILGAGGQIARHVINQLADKQTIKQTLFARQPAKI   61 (236)
T ss_dssp             --CCEEEEEETTTSHHHHHHHHHHTTCTTEEEEEEESSGGGS
T ss_pred             cCcccEEEEEeCCcHHHHHHHHHHHhCCCceEEEEEcChhhh
Confidence            477899999995 999999999999999 8999999998753

>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}

Probab=95.82  E-value=0.034  Score=54.39  Aligned_cols=35  Identities=29%  Similarity=0.262  Sum_probs=32.4

Q ss_pred             CccEEEEECCCcchHHHHHHHHHCCCeeEEecCCH
Q psy9056         219 PVKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFE  253 (359)
Q Consensus       219 ~~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~  253 (359)
                      ..++|.|||.|..|.+.|..|.+.|++|.++|.++
T Consensus         8 ~~k~v~viG~G~sG~s~A~~l~~~G~~V~~~D~~~   42 (451)
T 3lk7_A            8 ENKKVLVLGLARSGEAAARLLAKLGAIVTVNDGKP   42 (451)
T ss_dssp             TTCEEEEECCTTTHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEeCCc
Confidence            34799999999999999999999999999999865

>1cf2_P Protein (glyceraldehyde-3-phosphate dehydrogenase); oxydoreductase, oxidoreductase; HET: NAP; 2.10A {Methanothermus fervidus} SCOP: c.2.1.3 d.81.1.1

Probab=95.78  E-value=0.0091  Score=56.36  Aligned_cols=37  Identities=22%  Similarity=0.238  Sum_probs=28.1

Q ss_pred             ccEEEEECCCcchHHHHHHHHHC-CCee-EEecCCHHHH
Q psy9056         220 VKTVAVLGAGLMGAGIAHVTVDK-GYNT-IVKDSFEKGL  256 (359)
Q Consensus       220 ~~kI~IIG~G~mG~~iA~~l~~~-G~~V-~l~d~~~~~l  256 (359)
                      |.||+|+|+|.+|..+++.+.++ +.+| .+.|+++...
T Consensus         1 mikVgIiGaG~iG~~l~r~L~~~~~~elvav~d~~~~~~   39 (337)
T 1cf2_P            1 MKAVAINGYGTVGKRVADAIAQQDDMKVIGVSKTRPDFE   39 (337)
T ss_dssp             CEEEEEECCSTTHHHHHHHHHTSSSEEEEEEEESSCSHH
T ss_pred             CeEEEEEeECHHHHHHHHHHHcCCCcEEEEEEcCChhHH
Confidence            35899999999999999999874 4565 3457765543

>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}

Probab=95.76  E-value=0.036  Score=48.01  Aligned_cols=35  Identities=11%  Similarity=0.261  Sum_probs=32.1

Q ss_pred             EEEEEC-CCcchHHHHHHHHHCCCeeEEecCCHHHH
Q psy9056         222 TVAVLG-AGLMGAGIAHVTVDKGYNTIVKDSFEKGL  256 (359)
Q Consensus       222 kI~IIG-~G~mG~~iA~~l~~~G~~V~l~d~~~~~l  256 (359)
                      ||.|.| .|.+|..++..|++.|++|++++|+++.+
T Consensus         2 ~ilItGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~   37 (219)
T 3dqp_A            2 KIFIVGSTGRVGKSLLKSLSTTDYQIYAGARKVEQV   37 (219)
T ss_dssp             EEEEESTTSHHHHHHHHHHTTSSCEEEEEESSGGGS
T ss_pred             eEEEECCCCHHHHHHHHHHHHCCCEEEEEECCccch
Confidence            799999 59999999999999999999999998653

>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}

Probab=95.76  E-value=0.0057  Score=58.04  Aligned_cols=34  Identities=24%  Similarity=0.395  Sum_probs=31.3

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCCeeEEecCCHH
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEK  254 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~  254 (359)
                      .||.|||+|..|..+|..|+++|++|+++|+++.
T Consensus         2 m~V~IVGaGpaGl~~A~~L~~~G~~v~v~Er~~~   35 (412)
T 4hb9_A            2 MHVGIIGAGIGGTCLAHGLRKHGIKVTIYERNSA   35 (412)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCS
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence            4899999999999999999999999999987653

>1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A*

Probab=95.75  E-value=0.0089  Score=55.24  Aligned_cols=93  Identities=14%  Similarity=0.108  Sum_probs=64.8

Q ss_pred             hhhHHHHHhHhhhhhhhhcCCCCCCCCccEEEEECCCc-chHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHH
Q psy9056         193 PQSKGLMGLFRAQTECKKNRLGKPQTPVKTVAVLGAGL-MGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAV  271 (359)
Q Consensus       193 ~~~~~~~~af~~k~~~~~~~~~~~~~~~~kI~IIG~G~-mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~  271 (359)
                      |-+-+|+..++++...        +-+=+++.|||.|. +|..+|..|.+.|..|++++.....++              
T Consensus       146 PcTp~gi~~ll~~~~i--------~l~gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t~~L~--------------  203 (301)
T 1a4i_A          146 PCTPKGCLELIKETGV--------PIAGRHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSKTAHLD--------------  203 (301)
T ss_dssp             CHHHHHHHHHHHTTTC--------CCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCSSHH--------------
T ss_pred             CchHHHHHHHHHHcCC--------CCCCCEEEEECCCchHHHHHHHHHHhCCCeEEEEECCcccHH--------------
Confidence            3456667766665531        12237999999995 799999999999999999985432211              


Q ss_pred             hhccCChHHHHhhhcccccccCcCCCCCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCC
Q psy9056         272 KRKKMSALDRDRYLASLVGTLSYDPFKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSA  337 (359)
Q Consensus       272 ~~~~~~~~~~~~~~~~i~~~~~~~~l~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~  337 (359)
                                             +.+.++|+||-+++...-+.       .+.++++++|++....
T Consensus       204 -----------------------~~~~~ADIVI~Avg~p~~I~-------~~~vk~GavVIDVgi~  239 (301)
T 1a4i_A          204 -----------------------EEVNKGDILVVATGQPEMVK-------GEWIKPGAIVIDCGIN  239 (301)
T ss_dssp             -----------------------HHHTTCSEEEECCCCTTCBC-------GGGSCTTCEEEECCCB
T ss_pred             -----------------------HHhccCCEEEECCCCcccCC-------HHHcCCCcEEEEccCC
Confidence                                   34789999999997533122       2345789999876653

>3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp}

Probab=95.74  E-value=0.0074  Score=55.37  Aligned_cols=92  Identities=18%  Similarity=0.113  Sum_probs=62.9

Q ss_pred             hhhHHHHHhHhhhhhhhhcCCCCCCCCccEEEEECCCc-chHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHH
Q psy9056         193 PQSKGLMGLFRAQTECKKNRLGKPQTPVKTVAVLGAGL-MGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAV  271 (359)
Q Consensus       193 ~~~~~~~~af~~k~~~~~~~~~~~~~~~~kI~IIG~G~-mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~  271 (359)
                      |-.-.|+-..+++...        ...=+++.|||.|. +|.++|..|.+.|..|++.++....++              
T Consensus       141 PcTp~gv~~lL~~~~i--------~l~Gk~vvVvGrs~iVG~p~A~lL~~~gAtVtv~h~~t~~L~--------------  198 (285)
T 3p2o_A          141 PCTPLGVMKLLKAYEI--------DLEGKDAVIIGASNIVGRPMATMLLNAGATVSVCHIKTKDLS--------------  198 (285)
T ss_dssp             CHHHHHHHHHHHHTTC--------CCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCSCHH--------------
T ss_pred             CCCHHHHHHHHHHhCC--------CCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCchhHH--------------
Confidence            3345556555555431        12337999999876 799999999999999999986532211              


Q ss_pred             hhccCChHHHHhhhcccccccCcCCCCCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCC
Q psy9056         272 KRKKMSALDRDRYLASLVGTLSYDPFKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTS  336 (359)
Q Consensus       272 ~~~~~~~~~~~~~~~~i~~~~~~~~l~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts  336 (359)
                                             +.+.++|+||-+++...-+.       .+.++++++|++...
T Consensus       199 -----------------------~~~~~ADIVI~Avg~p~~I~-------~~~vk~GavVIDVgi  233 (285)
T 3p2o_A          199 -----------------------LYTRQADLIIVAAGCVNLLR-------SDMVKEGVIVVDVGI  233 (285)
T ss_dssp             -----------------------HHHTTCSEEEECSSCTTCBC-------GGGSCTTEEEEECCC
T ss_pred             -----------------------HHhhcCCEEEECCCCCCcCC-------HHHcCCCeEEEEecc
Confidence                                   23688999999997432121       245688999887654

>4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens}

Probab=95.74  E-value=0.016  Score=52.95  Aligned_cols=34  Identities=18%  Similarity=0.305  Sum_probs=31.2

Q ss_pred             cEEEEECC-CcchHHHHHHHHHCCCeeEEecCCHH
Q psy9056         221 KTVAVLGA-GLMGAGIAHVTVDKGYNTIVKDSFEK  254 (359)
Q Consensus       221 ~kI~IIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~  254 (359)
                      +||.|.|+ |.+|+.++..|.+.||+|+++.|+++
T Consensus         1 MkILVTGatGfIG~~L~~~L~~~G~~V~~l~R~~~   35 (298)
T 4b4o_A            1 MRVLVGGGTGFIGTALTQLLNARGHEVTLVSRKPG   35 (298)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCC
Confidence            47999997 99999999999999999999998764

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=95.73  E-value=0.034  Score=54.72  Aligned_cols=99  Identities=14%  Similarity=0.222  Sum_probs=63.7

Q ss_pred             CCccEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcCCC
Q psy9056         218 TPVKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPF  297 (359)
Q Consensus       218 ~~~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l  297 (359)
                      .+.++|.|+|+|.+|..+|..| ..+++|.+++.|+++.+.+.+.+.+.+   +-.|.-++.   ..   +    ..+.+
T Consensus       233 ~~~~~v~I~GgG~ig~~lA~~L-~~~~~v~iIE~d~~r~~~la~~l~~~~---Vi~GD~td~---~~---L----~ee~i  298 (461)
T 4g65_A          233 KPYRRIMIVGGGNIGASLAKRL-EQTYSVKLIERNLQRAEKLSEELENTI---VFCGDAADQ---EL---L----TEENI  298 (461)
T ss_dssp             SCCCEEEEECCSHHHHHHHHHH-TTTSEEEEEESCHHHHHHHHHHCTTSE---EEESCTTCH---HH---H----HHTTG
T ss_pred             ccccEEEEEcchHHHHHHHHHh-hhcCceEEEecCHHHHHHHHHHCCCce---EEeccccch---hh---H----hhcCc
Confidence            4468999999999999999997 456999999999999887654322100   000100000   00   0    01357


Q ss_pred             CCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEE
Q psy9056         298 KNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVA  332 (359)
Q Consensus       298 ~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~  332 (359)
                      .++|+++-++..+.  ..-+...+.+.++...+|+
T Consensus       299 ~~~D~~ia~T~~De--~Ni~~~llAk~~gv~kvIa  331 (461)
T 4g65_A          299 DQVDVFIALTNEDE--TNIMSAMLAKRMGAKKVMV  331 (461)
T ss_dssp             GGCSEEEECCSCHH--HHHHHHHHHHHTTCSEEEE
T ss_pred             hhhcEEEEcccCcH--HHHHHHHHHHHcCCccccc
Confidence            99999999887665  3344455566666666665

>3dr3_A N-acetyl-gamma-glutamyl-phosphate reductase; csgid target, ARGC, essential gene, amino-acid biosynthesis, arginine biosynthesis, cytoplasm; HET: MLT; 2.00A {Shigella flexneri} PDB: 2g17_A

Probab=95.64  E-value=0.014  Score=55.05  Aligned_cols=101  Identities=18%  Similarity=0.179  Sum_probs=59.5

Q ss_pred             CccEEEEECC-CcchHHHHHHHHHC-CCeeEEecCCH---HHHHHHHHHHHHhHHHHHhhccCChHHHHhhhccccccc-
Q psy9056         219 PVKTVAVLGA-GLMGAGIAHVTVDK-GYNTIVKDSFE---KGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTL-  292 (359)
Q Consensus       219 ~~~kI~IIG~-G~mG~~iA~~l~~~-G~~V~l~d~~~---~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~-  292 (359)
                      .|.||+|+|+ |++|..+...|.++ .+++..+..+.   ..-+.    +....+.+ . +.          ..+.+.. 
T Consensus         3 ~M~kv~IvGatG~vG~~l~~~L~~~p~~el~~l~s~~~~~saGk~----~~~~~p~~-~-~~----------~~~~v~~~   66 (337)
T 3dr3_A            3 AMLNTLIVGASGYAGAELVTYVNRHPHMNITALTVSAQSNDAGKL----ISDLHPQL-K-GI----------VELPLQPM   66 (337)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHHHCTTEEEEEEEEETTCTTTTSB----HHHHCGGG-T-TT----------CCCBEEEE
T ss_pred             CceEEEEECCCChHHHHHHHHHHhCCCCcEEEEEecCchhhcCCc----hHHhCccc-c-Cc----------cceeEecc
Confidence            3689999995 99999999999885 45777664333   11000    11000000 0 00          0122222 


Q ss_pred             -CcCCC-CCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCcH
Q psy9056         293 -SYDPF-KNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPI  340 (359)
Q Consensus       293 -~~~~l-~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~  340 (359)
                       +.+.+ .++|+||+|+|...  -+++...+.   ..++.++++++....
T Consensus        67 ~~~~~~~~~~Dvvf~a~p~~~--s~~~~~~~~---~~g~~vIDlSa~fR~  111 (337)
T 3dr3_A           67 SDISEFSPGVDVVFLATAHEV--SHDLAPQFL---EAGCVVFDLSGAFRV  111 (337)
T ss_dssp             SSGGGTCTTCSEEEECSCHHH--HHHHHHHHH---HTTCEEEECSSTTSS
T ss_pred             CCHHHHhcCCCEEEECCChHH--HHHHHHHHH---HCCCEEEEcCCcccc
Confidence             33444 89999999998554  335555543   357888888887543

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=95.63  E-value=0.091  Score=48.52  Aligned_cols=95  Identities=13%  Similarity=0.010  Sum_probs=61.9

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhccccc-ccCcCC--C
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVG-TLSYDP--F  297 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~--l  297 (359)
                      .+|..||+|..|.+........|.+|+.+|.+++.++.+++.+...       +         . +++++ ..|...  -
T Consensus       124 ~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~-------g---------l-~~v~~v~gDa~~l~d  186 (298)
T 3fpf_A          124 ERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGL-------G---------V-DGVNVITGDETVIDG  186 (298)
T ss_dssp             CEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHH-------T---------C-CSEEEEESCGGGGGG
T ss_pred             CEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHhc-------C---------C-CCeEEEECchhhCCC
Confidence            6999999999765433332235889999999999999887654321       1         0 23332 122211  2


Q ss_pred             CCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEc
Q psy9056         298 KNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATN  334 (359)
Q Consensus       298 ~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~  334 (359)
                      ...|+|+.+...  .-+..+++++.+.++|+.+++..
T Consensus       187 ~~FDvV~~~a~~--~d~~~~l~el~r~LkPGG~Lvv~  221 (298)
T 3fpf_A          187 LEFDVLMVAALA--EPKRRVFRNIHRYVDTETRIIYR  221 (298)
T ss_dssp             CCCSEEEECTTC--SCHHHHHHHHHHHCCTTCEEEEE
T ss_pred             CCcCEEEECCCc--cCHHHHHHHHHHHcCCCcEEEEE
Confidence            457999876542  22557889999999998866543

>3o9z_A Lipopolysaccaride biosynthesis protein WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD AKG; 1.45A {Thermus thermophilus} PDB: 3oa0_A*

Probab=95.62  E-value=0.035  Score=51.58  Aligned_cols=37  Identities=14%  Similarity=0.096  Sum_probs=30.7

Q ss_pred             CccEEEEECC-CcchHHHHHHHHHCCCe-eEEecCCHHH
Q psy9056         219 PVKTVAVLGA-GLMGAGIAHVTVDKGYN-TIVKDSFEKG  255 (359)
Q Consensus       219 ~~~kI~IIG~-G~mG~~iA~~l~~~G~~-V~l~d~~~~~  255 (359)
                      +|.||+|||+ |.+|...+..+.+.+.+ |.++|+++++
T Consensus         2 ~mirvgiIG~gG~i~~~h~~~l~~~~~~lvav~d~~~~~   40 (312)
T 3o9z_A            2 HMTRFALTGLAGYIAPRHLKAIKEVGGVLVASLDPATNV   40 (312)
T ss_dssp             -CCEEEEECTTSSSHHHHHHHHHHTTCEEEEEECSSCCC
T ss_pred             CceEEEEECCChHHHHHHHHHHHhCCCEEEEEEcCCHHH
Confidence            3679999999 78999999999988876 4677998764

>1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A

Probab=95.62  E-value=0.012  Score=57.68  Aligned_cols=41  Identities=22%  Similarity=0.292  Sum_probs=36.2

Q ss_pred             CCccEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHH
Q psy9056         218 TPVKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLAR  258 (359)
Q Consensus       218 ~~~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~  258 (359)
                      |.+++|.|+|+|.+|..++..+++.|++|+++|+++++++.
T Consensus         1 M~~k~VlViGaG~iG~~ia~~L~~~G~~V~v~~R~~~~a~~   41 (450)
T 1ff9_A            1 MATKSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLESAKK   41 (450)
T ss_dssp             -CCCEEEEECCSTTHHHHHHHHHTTTCEEEEEESSHHHHHH
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCcCEEEEEECCHHHHHH
Confidence            45679999999999999999999999999999999877554

>3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis}

Probab=95.61  E-value=0.0091  Score=54.78  Aligned_cols=91  Identities=18%  Similarity=0.119  Sum_probs=61.8

Q ss_pred             hhHHHHHhHhhhhhhhhcCCCCCCCCccEEEEECCCc-chHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHh
Q psy9056         194 QSKGLMGLFRAQTECKKNRLGKPQTPVKTVAVLGAGL-MGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVK  272 (359)
Q Consensus       194 ~~~~~~~af~~k~~~~~~~~~~~~~~~~kI~IIG~G~-mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~  272 (359)
                      -.-.|+-..+++...        ...=+++.|||.|. +|.++|..|.+.|..|++.++....++               
T Consensus       143 cTp~gv~~lL~~~~i--------~l~Gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t~~L~---------------  199 (285)
T 3l07_A          143 CTPKGIMTMLREYGI--------KTEGAYAVVVGASNVVGKPVSQLLLNAKATVTTCHRFTTDLK---------------  199 (285)
T ss_dssp             HHHHHHHHHHHHTTC--------CCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCSSHH---------------
T ss_pred             CCHHHHHHHHHHhCC--------CCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCchhHH---------------
Confidence            344555555554431        12237999999876 799999999999999999986432111               


Q ss_pred             hccCChHHHHhhhcccccccCcCCCCCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCC
Q psy9056         273 RKKMSALDRDRYLASLVGTLSYDPFKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTS  336 (359)
Q Consensus       273 ~~~~~~~~~~~~~~~i~~~~~~~~l~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts  336 (359)
                                            +.+.++|+||-+++...-+.       .+.++++++|++...
T Consensus       200 ----------------------~~~~~ADIVI~Avg~p~~I~-------~~~vk~GavVIDvgi  234 (285)
T 3l07_A          200 ----------------------SHTTKADILIVAVGKPNFIT-------ADMVKEGAVVIDVGI  234 (285)
T ss_dssp             ----------------------HHHTTCSEEEECCCCTTCBC-------GGGSCTTCEEEECCC
T ss_pred             ----------------------HhcccCCEEEECCCCCCCCC-------HHHcCCCcEEEEecc
Confidence                                  23688999999997432121       245688999887654

>3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406}

Probab=95.60  E-value=0.019  Score=45.86  Aligned_cols=102  Identities=12%  Similarity=-0.016  Sum_probs=67.4

Q ss_pred             ccEEEEECC----CcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcC
Q psy9056         220 VKTVAVLGA----GLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYD  295 (359)
Q Consensus       220 ~~kI~IIG~----G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~  295 (359)
                      .++|+|||+    +.+|..+...|.+.||+|+-++...+.+                             ....+..+++
T Consensus         4 p~siAVVGaS~~~~~~g~~v~~~L~~~g~~V~pVnP~~~~i-----------------------------~G~~~y~sl~   54 (122)
T 3ff4_A            4 MKKTLILGATPETNRYAYLAAERLKSHGHEFIPVGRKKGEV-----------------------------LGKTIINERP   54 (122)
T ss_dssp             CCCEEEETCCSCTTSHHHHHHHHHHHHTCCEEEESSSCSEE-----------------------------TTEECBCSCC
T ss_pred             CCEEEEEccCCCCCCHHHHHHHHHHHCCCeEEEECCCCCcC-----------------------------CCeeccCChH
Confidence            478999997    6789999999999999999988764310                             1233445565


Q ss_pred             CCCCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCcHHHHHhhcC-CCCcEEe
Q psy9056         296 PFKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPITKIAAASK-RPDKVRN  355 (359)
Q Consensus       296 ~l~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~-~~~rvig  355 (359)
                      ++.+.|++++++|.+.  ..++++++.+.- ...+++  ++|..-.++.+.+. ..-|+++
T Consensus        55 dlp~vDlavi~~p~~~--v~~~v~e~~~~g-~k~v~~--~~G~~~~e~~~~a~~~Girvv~  110 (122)
T 3ff4_A           55 VIEGVDTVTLYINPQN--QLSEYNYILSLK-PKRVIF--NPGTENEELEEILSENGIEPVI  110 (122)
T ss_dssp             CCTTCCEEEECSCHHH--HGGGHHHHHHHC-CSEEEE--CTTCCCHHHHHHHHHTTCEEEE
T ss_pred             HCCCCCEEEEEeCHHH--HHHHHHHHHhcC-CCEEEE--CCCCChHHHHHHHHHcCCeEEC
Confidence            6644999999997544  668888876653 335543  45554445544443 2245554

>1tg6_A Putative ATP-dependent CLP protease proteolytic S; mitochondrial CLPP, CLP/HSP 100, ATP-dependent protease, HYD; HET: FME; 2.10A {Homo sapiens} SCOP: c.14.1.1

Probab=95.59  E-value=0.013  Score=53.53  Aligned_cols=78  Identities=17%  Similarity=0.130  Sum_probs=53.0

Q ss_pred             CCCCchHHHHHHhcCE--EEEecCCceEEeccccCCCCCCCcchHh-----------------HHhhhcC--hHHHHHHH
Q psy9056           1 MFAEPSLATVALACHY--RIVVKDKKTGLGLPEVMLGLLPGAGGTQ-----------------RLPKLTA--LPNVLDMT   59 (359)
Q Consensus         1 ~~a~GgG~~lalacD~--ria~~~~~~~~~~pe~~~Gi~p~~g~~~-----------------~l~~~~g--~~~a~~~~   59 (359)
                      |.|.-+|.-|+++||.  |+|.++  ++++.-...-|. -+. ...                 .+....|  .....+++
T Consensus       149 G~AASaG~~Ia~Agd~gkr~a~P~--S~ImihqP~~g~-~G~-a~Di~~~a~ei~~~~~~~~~i~a~~tG~~~e~i~~~~  224 (277)
T 1tg6_A          149 GQAASMGSLLLAAGTPGMRHSLPN--SRIMIHQPSGGA-RGQ-ATDIAIQAEEIMKLKKQLYNIYAKHTKQSLQVIESAM  224 (277)
T ss_dssp             EEEETHHHHHHHTSCTTCEEECTT--CEEEECCCCCCC-CSS-HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred             cEeHHHHHHHHHCCCcCCEEEecC--CEEEEecccccc-cCc-HHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence            3577889999999999  999988  888876654332 111 010                 1122222  23445555


Q ss_pred             hcCCCCCHHHHHHcCCcceecCC
Q psy9056          60 LTGKTLKADKAKKMGIVDQLVEP   82 (359)
Q Consensus        60 ltg~~~~a~eA~~~Glv~~~~~~   82 (359)
                      -.+..|+++||+++||||++...
T Consensus       225 drd~~lta~EAle~GLID~I~~~  247 (277)
T 1tg6_A          225 ERDRYMSPMEAQEFGILDKVLVH  247 (277)
T ss_dssp             SSCEEECHHHHHHHTSCSEECSS
T ss_pred             hcCcccCHHHHHHCCCCCEecCc
Confidence            55667899999999999999986

>2w3p_A Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ring cleaving, burkholderia xenovorans LB400 crotonase; 1.50A {Burkholderia xenovorans}

Probab=95.59  E-value=0.033  Score=55.43  Aligned_cols=98  Identities=20%  Similarity=0.254  Sum_probs=74.4

Q ss_pred             CchHHHHHHhcCEEEEec-----CCceEEeccccCCCCCCCcchHhHHhhh-cChHHHHH--HHhcCCCCCHHHHHHcCC
Q psy9056           4 EPSLATVALACHYRIVVK-----DKKTGLGLPEVMLGLLPGAGGTQRLPKL-TALPNVLD--MTLTGKTLKADKAKKMGI   75 (359)
Q Consensus         4 ~GgG~~lalacD~ria~~-----~~~~~~~~pe~~~Gi~p~~g~~~~l~~~-~g~~~a~~--~~ltg~~~~a~eA~~~Gl   75 (359)
                      .|.-++|+++||..+|-+     .+...+.+.+.++|..|..-+..+|.++ .|.....+  -...|+++++++|.++||
T Consensus       389 ~g~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  468 (556)
T 2w3p_A          389 AGTFAELAFAADRTYMAALPANEDEEPAITLSEVNFGLYPMVTHQSRLARRFYEETEPLDAVRSRIGQAIKPVEAERLGL  468 (556)
T ss_dssp             EGGGHHHHHTSSEEEECCCTTCTTTSCCEECCGGGGTTSCCTTSSCHHHHHTTTCHHHHHHHHTTTTSCBCHHHHHHTTS
T ss_pred             HHHHHHHHHHhhhhhhhcCCCCCCCCceeEeeccccCcccCCCchhHHHHHhcCCcchHHHHHHHhCCCCCHHHHHhcCC
Confidence            466789999999999964     2357999999999999999888888877 44433332  233599999999999999


Q ss_pred             cceecCCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCcc
Q psy9056          76 VDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKL  114 (359)
Q Consensus        76 v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~  114 (359)
                      |+..-++             =+.+++.+-..++=++.+|
T Consensus       469 ~~~~~~~-------------~~~~~~~~~~~~~~~~~~~  494 (556)
T 2w3p_A          469 VTASPDD-------------IDWADEIRIALEERAAMSP  494 (556)
T ss_dssp             SSBCCCT-------------TTHHHHHHHHHHHHHHSCH
T ss_pred             eecCccc-------------CChHHHHHHHHHHHhccCc
Confidence            9977666             2356666666666666666

>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis}

Probab=95.59  E-value=0.0063  Score=59.91  Aligned_cols=35  Identities=26%  Similarity=0.404  Sum_probs=32.1

Q ss_pred             ccEEEEECCCcchHHHHHHHHHCCCeeEEecCCHH
Q psy9056         220 VKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEK  254 (359)
Q Consensus       220 ~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~  254 (359)
                      ||+|.|||+|.-|.+.|..|+++|++|++++.++.
T Consensus         1 Mk~VvVIGaG~~GL~aA~~La~~G~~V~VlEa~~~   35 (501)
T 4dgk_A            1 MKPTTVIGAGFGGLALAIRLQAAGIPVLLLEQRDK   35 (501)
T ss_dssp             CCCEEEECCHHHHHHHHHHHHHTTCCEEEECCC--
T ss_pred             CCCEEEECCcHHHHHHHHHHHHCCCcEEEEccCCC
Confidence            78999999999999999999999999999998764

>3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum}

Probab=95.54  E-value=0.025  Score=56.32  Aligned_cols=36  Identities=28%  Similarity=0.289  Sum_probs=32.9

Q ss_pred             ccEEEEECC-CcchHHHHHHHHHCCCeeEEecCCHHH
Q psy9056         220 VKTVAVLGA-GLMGAGIAHVTVDKGYNTIVKDSFEKG  255 (359)
Q Consensus       220 ~~kI~IIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~  255 (359)
                      +++|.|.|+ |.+|+.++..|++.|++|+++++++..
T Consensus       147 ~m~VLVTGatG~IG~~l~~~L~~~G~~V~~l~R~~~~  183 (516)
T 3oh8_A          147 PLTVAITGSRGLVGRALTAQLQTGGHEVIQLVRKEPK  183 (516)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSSCC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCC
Confidence            579999995 999999999999999999999998753

>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A

Probab=95.53  E-value=0.033  Score=52.12  Aligned_cols=93  Identities=10%  Similarity=-0.029  Sum_probs=58.3

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc--CCCC
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY--DPFK  298 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~l~  298 (359)
                      ++|.|+|.|.+|..++..+.+.|+ |+++|+|+++++ ..+.   ..  ..-.|..++            .+.+  ..++
T Consensus       116 ~~viI~G~G~~g~~l~~~L~~~g~-v~vid~~~~~~~-~~~~---~~--~~i~gd~~~------------~~~L~~a~i~  176 (336)
T 1lnq_A          116 RHVVICGWSESTLECLRELRGSEV-FVLAEDENVRKK-VLRS---GA--NFVHGDPTR------------VSDLEKANVR  176 (336)
T ss_dssp             CEEEEESCCHHHHHHHTTGGGSCE-EEEESCGGGHHH-HHHT---TC--EEEESCTTS------------HHHHHHTCST
T ss_pred             CCEEEECCcHHHHHHHHHHHhCCc-EEEEeCChhhhh-HHhC---Cc--EEEEeCCCC------------HHHHHhcChh
Confidence            589999999999999999999999 999999998876 4320   00  000010000            0011  2378


Q ss_pred             CccEEEEcccCCHHHHHHHHHHHHHhCCCC-cEEEEc
Q psy9056         299 NADMVIEAVFEDINIKHQVIKEIEAVVPPH-CVVATN  334 (359)
Q Consensus       299 ~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~-~ii~s~  334 (359)
                      ++|.|+.+++++..  ....-...+...++ .+++-.
T Consensus       177 ~a~~vi~~~~~d~~--n~~~~~~ar~~~~~~~iiar~  211 (336)
T 1lnq_A          177 GARAVIVDLESDSE--TIHCILGIRKIDESVRIIAEA  211 (336)
T ss_dssp             TEEEEEECCSSHHH--HHHHHHHHHTTCTTSEEEEEC
T ss_pred             hccEEEEcCCccHH--HHHHHHHHHHHCCCCeEEEEE
Confidence            99999999987642  22222333444555 455543

>3do5_A HOM, homoserine dehydrogenase; NP_069768.1, putative homoserine dehydrogenase, structural G joint center for structural genomics, JCSG; 2.20A {Archaeoglobus fulgidus}

Probab=95.51  E-value=0.0073  Score=56.77  Aligned_cols=36  Identities=28%  Similarity=0.494  Sum_probs=28.0

Q ss_pred             ccEEEEECCCcchHHHHHHHHHC---------CCee-EEecCCHHH
Q psy9056         220 VKTVAVLGAGLMGAGIAHVTVDK---------GYNT-IVKDSFEKG  255 (359)
Q Consensus       220 ~~kI~IIG~G~mG~~iA~~l~~~---------G~~V-~l~d~~~~~  255 (359)
                      |-||+|||+|.||..++..+.+.         +.+| .++|+++..
T Consensus         2 mirvgIiG~G~VG~~~~~~l~~~~~~l~~~g~~~~lvaV~d~~~~~   47 (327)
T 3do5_A            2 MIKIAIVGFGTVGQGVAELLIRKREEIEKAIGEFKVTAVADSKSSI   47 (327)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTHHHHHHHHCCEEEEEEECSSCEE
T ss_pred             cEEEEEEeccHHHHHHHHHHHhhHHHHHhcCCCEEEEEEEeCChHh
Confidence            56999999999999999998875         4444 455777543

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=95.51  E-value=0.039  Score=48.84  Aligned_cols=33  Identities=18%  Similarity=0.234  Sum_probs=31.1

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCCeeEEecCCH
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFE  253 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~  253 (359)
                      ++|.|||+|.+|..-+..|.+.|.+|++++.+.
T Consensus        32 k~VLVVGgG~va~~ka~~Ll~~GA~VtVvap~~   64 (223)
T 3dfz_A           32 RSVLVVGGGTIATRRIKGFLQEGAAITVVAPTV   64 (223)
T ss_dssp             CCEEEECCSHHHHHHHHHHGGGCCCEEEECSSC
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEECCCC
Confidence            789999999999999999999999999998764

>1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A*

Probab=95.50  E-value=0.0084  Score=56.08  Aligned_cols=93  Identities=13%  Similarity=0.005  Sum_probs=59.5

Q ss_pred             ccEEEEECCCcc-hHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhccccc-----c--
Q psy9056         220 VKTVAVLGAGLM-GAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVG-----T--  291 (359)
Q Consensus       220 ~~kI~IIG~G~m-G~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~-----~--  291 (359)
                      =+++.|||.|.| |..+|..+...|..|+++|++..++..          .......          .....     +  
T Consensus       177 gk~vvVIG~G~iVG~~~A~~L~~~gAtVtv~nR~~~~l~~----------ra~~la~----------~~~~~t~~~~t~~  236 (320)
T 1edz_A          177 GKKCIVINRSEIVGRPLAALLANDGATVYSVDVNNIQKFT----------RGESLKL----------NKHHVEDLGEYSE  236 (320)
T ss_dssp             TCEEEEECCCTTTHHHHHHHHHTTSCEEEEECSSEEEEEE----------SCCCSSC----------CCCEEEEEEECCH
T ss_pred             CCEEEEECCCcchHHHHHHHHHHCCCEEEEEeCchHHHHh----------HHHHHhh----------hcccccccccccH
Confidence            379999999965 999999999999999999998432110          0000000          00001     1  


Q ss_pred             cCc-CCCCCccEEEEcccCCHH-HHHHHHHHHHHhCCCCcEEEEcCCCCc
Q psy9056         292 LSY-DPFKNADMVIEAVFEDIN-IKHQVIKEIEAVVPPHCVVATNTSAIP  339 (359)
Q Consensus       292 ~~~-~~l~~aD~Vi~avp~~~~-~k~~v~~~l~~~~~~~~ii~s~ts~~~  339 (359)
                      .++ +.+.++|+||-|++...- +.       .+.++++++|++.+..-.
T Consensus       237 ~~L~e~l~~ADIVIsAtg~p~~vI~-------~e~vk~GavVIDVgi~rD  279 (320)
T 1edz_A          237 DLLKKCSLDSDVVITGVPSENYKFP-------TEYIKEGAVCINFACTKN  279 (320)
T ss_dssp             HHHHHHHHHCSEEEECCCCTTCCBC-------TTTSCTTEEEEECSSSCC
T ss_pred             hHHHHHhccCCEEEECCCCCcceeC-------HHHcCCCeEEEEcCCCcc
Confidence            233 457899999999975321 11       123578899988876543

>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A*

Probab=95.48  E-value=0.035  Score=50.76  Aligned_cols=43  Identities=16%  Similarity=0.202  Sum_probs=37.8

Q ss_pred             cEEEEEC-CCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHH
Q psy9056         221 KTVAVLG-AGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQI  263 (359)
Q Consensus       221 ~kI~IIG-~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~  263 (359)
                      +++.|+| +|-+|.+++..+++.|.+|+++++++++.+...+.+
T Consensus       120 k~vlVtGaaGGiG~aia~~L~~~G~~V~i~~R~~~~~~~l~~~~  163 (287)
T 1lu9_A          120 KKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAADSV  163 (287)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHH
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCcCEEEEEECCHHHHHHHHHHH
Confidence            6899999 899999999999999999999999998877655443

>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A*

Probab=95.48  E-value=0.065  Score=49.40  Aligned_cols=33  Identities=24%  Similarity=0.289  Sum_probs=30.8

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCC-eeEEecCCH
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGY-NTIVKDSFE  253 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~-~V~l~d~~~  253 (359)
                      .+|.|||+|-+|+.++..|+..|. +++++|.+.
T Consensus        37 ~~VlVvGaGGlGs~va~~La~aGVG~i~lvD~D~   70 (292)
T 3h8v_A           37 FAVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYDK   70 (292)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred             CeEEEECcCHHHHHHHHHHHHcCCCEEEEECCCc
Confidence            689999999999999999999997 899999876

>3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae}

Probab=95.47  E-value=0.018  Score=53.02  Aligned_cols=100  Identities=11%  Similarity=0.064  Sum_probs=57.8

Q ss_pred             cEEEEEC-CCcchHHHHHHHHHC-CCee-EEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcC-C
Q psy9056         221 KTVAVLG-AGLMGAGIAHVTVDK-GYNT-IVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYD-P  296 (359)
Q Consensus       221 ~kI~IIG-~G~mG~~iA~~l~~~-G~~V-~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~  296 (359)
                      .||+|+| +|.||..++..+.+. ++++ -++|+++....      ..-.....  |.        ....+.+++|++ .
T Consensus        22 irV~V~Ga~GrMGr~i~~~v~~~~~~eLvg~vd~~~~~~~------G~d~gel~--G~--------~~~gv~v~~dl~~l   85 (288)
T 3ijp_A           22 MRLTVVGANGRMGRELITAIQRRKDVELCAVLVRKGSSFV------DKDASILI--GS--------DFLGVRITDDPESA   85 (288)
T ss_dssp             EEEEESSTTSHHHHHHHHHHHTCSSEEEEEEBCCTTCTTT------TSBGGGGT--TC--------SCCSCBCBSCHHHH
T ss_pred             eEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCcccc------ccchHHhh--cc--------CcCCceeeCCHHHH
Confidence            5899999 899999999988765 6664 55688753100      00000000  00        001345566764 4


Q ss_pred             CCCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCcHH
Q psy9056         297 FKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPIT  341 (359)
Q Consensus       297 l~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~  341 (359)
                      +.++|+||++++  ++.....+...   +..+.-+++.|+|++.+
T Consensus        86 l~~aDVvIDFT~--p~a~~~~~~~~---l~~Gv~vViGTTG~~~e  125 (288)
T 3ijp_A           86 FSNTEGILDFSQ--PQASVLYANYA---AQKSLIHIIGTTGFSKT  125 (288)
T ss_dssp             TTSCSEEEECSC--HHHHHHHHHHH---HHHTCEEEECCCCCCHH
T ss_pred             hcCCCEEEEcCC--HHHHHHHHHHH---HHcCCCEEEECCCCCHH
Confidence            689999999885  33222333333   33455555677777654

>4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1}

Probab=95.44  E-value=0.0094  Score=54.70  Aligned_cols=92  Identities=22%  Similarity=0.177  Sum_probs=62.4

Q ss_pred             hhhHHHHHhHhhhhhhhhcCCCCCCCCccEEEEECCCc-chHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHH
Q psy9056         193 PQSKGLMGLFRAQTECKKNRLGKPQTPVKTVAVLGAGL-MGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAV  271 (359)
Q Consensus       193 ~~~~~~~~af~~k~~~~~~~~~~~~~~~~kI~IIG~G~-mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~  271 (359)
                      |-.-.|+-..+++...        +-.=+++.|||.|. +|.++|..|.+.|..|++.++....++              
T Consensus       142 PcTp~gv~~lL~~~~i--------~l~Gk~vvVvGrs~iVG~plA~lL~~~gAtVtv~hs~T~~L~--------------  199 (286)
T 4a5o_A          142 PCTPKGIMTLLASTGA--------DLYGMDAVVVGASNIVGRPMALELLLGGCTVTVTHRFTRDLA--------------  199 (286)
T ss_dssp             CHHHHHHHHHHHHTTC--------CCTTCEEEEECTTSTTHHHHHHHHHHTTCEEEEECTTCSCHH--------------
T ss_pred             CCCHHHHHHHHHHhCC--------CCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCCcCHH--------------
Confidence            3445566555555431        12237999999865 899999999999999999976432111              


Q ss_pred             hhccCChHHHHhhhcccccccCcCCCCCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCC
Q psy9056         272 KRKKMSALDRDRYLASLVGTLSYDPFKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTS  336 (359)
Q Consensus       272 ~~~~~~~~~~~~~~~~i~~~~~~~~l~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts  336 (359)
                                             +.+.++|+||-+++...-+     .  .+.++++++|++...
T Consensus       200 -----------------------~~~~~ADIVI~Avg~p~~I-----~--~~~vk~GavVIDvgi  234 (286)
T 4a5o_A          200 -----------------------DHVSRADLVVVAAGKPGLV-----K--GEWIKEGAIVIDVGI  234 (286)
T ss_dssp             -----------------------HHHHTCSEEEECCCCTTCB-----C--GGGSCTTCEEEECCS
T ss_pred             -----------------------HHhccCCEEEECCCCCCCC-----C--HHHcCCCeEEEEecc
Confidence                                   2367899999999743212     1  245688999887654

>1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2

Probab=95.43  E-value=0.0061  Score=56.01  Aligned_cols=92  Identities=22%  Similarity=0.172  Sum_probs=63.2

Q ss_pred             hhhHHHHHhHhhhhhhhhcCCCCCCCCccEEEEECCCc-chHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHH
Q psy9056         193 PQSKGLMGLFRAQTECKKNRLGKPQTPVKTVAVLGAGL-MGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAV  271 (359)
Q Consensus       193 ~~~~~~~~af~~k~~~~~~~~~~~~~~~~kI~IIG~G~-mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~  271 (359)
                      |-+-+|+..++++...        +.+=+++.|||.|. +|.++|..+.+.|..|++++.....++              
T Consensus       140 PcTp~gi~~ll~~~~i--------~l~gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t~~L~--------------  197 (288)
T 1b0a_A          140 PCTPRGIVTLLERYNI--------DTFGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFTKNLR--------------  197 (288)
T ss_dssp             CHHHHHHHHHHHHTTC--------CCTTCEEEEECCCTTTHHHHHHHHHTTTCEEEEECSSCSCHH--------------
T ss_pred             CCcHHHHHHHHHHcCC--------CCCCCEEEEECCChHHHHHHHHHHHHCCCeEEEEeCCchhHH--------------
Confidence            4455667666665431        12237999999996 699999999999999999986543222              


Q ss_pred             hhccCChHHHHhhhcccccccCcCCCCCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCC
Q psy9056         272 KRKKMSALDRDRYLASLVGTLSYDPFKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTS  336 (359)
Q Consensus       272 ~~~~~~~~~~~~~~~~i~~~~~~~~l~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts  336 (359)
                                             +.++++|+||-+++...-+.       .++++++++|++...
T Consensus       198 -----------------------~~~~~ADIVI~Avg~p~lI~-------~~~vk~GavVIDVgi  232 (288)
T 1b0a_A          198 -----------------------HHVENADLLIVAVGKPGFIP-------GDWIKEGAIVIDVGI  232 (288)
T ss_dssp             -----------------------HHHHHCSEEEECSCCTTCBC-------TTTSCTTCEEEECCC
T ss_pred             -----------------------HHhccCCEEEECCCCcCcCC-------HHHcCCCcEEEEccC
Confidence                                   23677899999987432121       123578898887654

>1b7g_O Protein (glyceraldehyde 3-phosphate dehydrogenase; archaea, hyperthermophIle, GAPDH, hyperthermophilic dehydrog oxidoreductase; 2.05A {Sulfolobus solfataricus} SCOP: c.2.1.3 d.81.1.1

Probab=95.42  E-value=0.02  Score=54.01  Aligned_cols=84  Identities=15%  Similarity=0.162  Sum_probs=47.2

Q ss_pred             cEEEEECCCcchHHHHHHHHHCC-Cee-EEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhc--ccccccCcCC
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKG-YNT-IVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLA--SLVGTLSYDP  296 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G-~~V-~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~--~i~~~~~~~~  296 (359)
                      .||+|+|+|.||..++..+.++. .+| .+.|++++.......+.  .+      .............  .+...++.+.
T Consensus         2 ikVgIiGaG~iG~~~~r~L~~~p~~elvav~d~~~~~~~~~a~~~--g~------~~~~~~~~~~~~~~~~v~v~~~~e~   73 (340)
T 1b7g_O            2 VNVAVNGYGTIGKRVADAIIKQPDMKLVGVAKTSPNYEAFIAHRR--GI------RIYVPQQSIKKFEESGIPVAGTVED   73 (340)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTCTTEEEEEEECSSCSHHHHHHHHT--TC------CEECCGGGHHHHHTTTCCCCCCHHH
T ss_pred             eEEEEEecCHHHHHHHHHHHcCCCCEEEEEEcCChHHHHHHHHhc--Cc------ceecCcCHHHHhcccccccccCHhH
Confidence            48999999999999999988763 454 45677765444322210  00      0000000111111  1223333332


Q ss_pred             -CCCccEEEEcccCCHH
Q psy9056         297 -FKNADMVIEAVFEDIN  312 (359)
Q Consensus       297 -l~~aD~Vi~avp~~~~  312 (359)
                       ..++|+||+|+|....
T Consensus        74 l~~~vDvV~~aTp~~~s   90 (340)
T 1b7g_O           74 LIKTSDIVVDTTPNGVG   90 (340)
T ss_dssp             HHHHCSEEEECCSTTHH
T ss_pred             hhcCCCEEEECCCCchh
Confidence             3579999999997764

>2ozp_A N-acetyl-gamma-glutamyl-phosphate reductase; amino acid biosynthesis, structural genomics, riken structur genomics/proteomics initiative; 2.01A {Thermus thermophilus}

Probab=95.41  E-value=0.03  Score=52.90  Aligned_cols=97  Identities=12%  Similarity=0.147  Sum_probs=55.0

Q ss_pred             ccEEEEEC-CCcchHHHHHHHHHCCC-eeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcCCC
Q psy9056         220 VKTVAVLG-AGLMGAGIAHVTVDKGY-NTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPF  297 (359)
Q Consensus       220 ~~kI~IIG-~G~mG~~iA~~l~~~G~-~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l  297 (359)
                      +.||+|+| .|++|..+.+.+.++.. +|+.+....+.-.+        +...  .+.+..      ...+.+. +.+.+
T Consensus         4 ~~kV~IiGAtG~iG~~llr~L~~~p~~elv~v~s~~~~g~~--------~~~~--~~~~~g------~~~~~~~-~~~~~   66 (345)
T 2ozp_A            4 KKTLSIVGASGYAGGEFLRLALSHPYLEVKQVTSRRFAGEP--------VHFV--HPNLRG------RTNLKFV-PPEKL   66 (345)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHTCTTEEEEEEBCSTTTTSB--------GGGT--CGGGTT------TCCCBCB-CGGGC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHcCCCcEEEEEECchhhCch--------hHHh--CchhcC------ccccccc-chhHh
Confidence            46999999 59999999999987754 76665433221000        0000  000000      0012111 11125


Q ss_pred             CCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCC
Q psy9056         298 KNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAI  338 (359)
Q Consensus       298 ~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~  338 (359)
                      .++|+||+|+|....  .++...+.   ..++.+++.++..
T Consensus        67 ~~vDvV~~a~g~~~s--~~~a~~~~---~aG~~VId~Sa~~  102 (345)
T 2ozp_A           67 EPADILVLALPHGVF--AREFDRYS---ALAPVLVDLSADF  102 (345)
T ss_dssp             CCCSEEEECCCTTHH--HHTHHHHH---TTCSEEEECSSTT
T ss_pred             cCCCEEEEcCCcHHH--HHHHHHHH---HCCCEEEEcCccc
Confidence            789999999998774  34444433   4567777877754

>3oqb_A Oxidoreductase; structural genomics, protein structure INI NEW YORK structural genomix research consortium, NYSGXRC, PSI-2; 2.60A {Bradyrhizobium japonicum}

Probab=95.38  E-value=0.016  Score=55.32  Aligned_cols=70  Identities=19%  Similarity=0.169  Sum_probs=46.9

Q ss_pred             cEEEEEC-CCcchHH-HH----HHHHHCC-Cee----------EEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHh
Q psy9056         221 KTVAVLG-AGLMGAG-IA----HVTVDKG-YNT----------IVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDR  283 (359)
Q Consensus       221 ~kI~IIG-~G~mG~~-iA----~~l~~~G-~~V----------~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~  283 (359)
                      .||+||| +|.||.. .+    ..+.+.+ ..+          .++|+++++.+...+...                   
T Consensus         7 irigiiG~~G~~g~~~h~~~~~~~~~~~~~~~l~~~~~~~~~~av~~~~~~~a~~~a~~~~-------------------   67 (383)
T 3oqb_A            7 LGLIMNGVTGRMGLNQHLIRSIVAIRDQGGVRLKNGDRIMPDPILVGRSAEKVEALAKRFN-------------------   67 (383)
T ss_dssp             EEEEEESTTSTHHHHTTTTTTHHHHHHHTSEECTTSCEEEEEEEEECSSSHHHHHHHHHTT-------------------
T ss_pred             eEEEEEeccchhhhhhhHHHHHHHHhhcCceeecCCcccceeeEEEcCCHHHHHHHHHHhC-------------------
Confidence            4899999 9999998 66    6666554 232          499999988765432111                   


Q ss_pred             hhcccccccCcCC-C--CCccEEEEcccCCHH
Q psy9056         284 YLASLVGTLSYDP-F--KNADMVIEAVFEDIN  312 (359)
Q Consensus       284 ~~~~i~~~~~~~~-l--~~aD~Vi~avp~~~~  312 (359)
                         .-...+|+++ +  .+.|+|++|+|....
T Consensus        68 ---~~~~~~~~~~ll~~~~iD~V~i~tp~~~h   96 (383)
T 3oqb_A           68 ---IARWTTDLDAALADKNDTMFFDAATTQAR   96 (383)
T ss_dssp             ---CCCEESCHHHHHHCSSCCEEEECSCSSSS
T ss_pred             ---CCcccCCHHHHhcCCCCCEEEECCCchHH
Confidence               0123455533 3  458999999998664

>2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2

Probab=95.38  E-value=0.21  Score=45.15  Aligned_cols=44  Identities=20%  Similarity=0.135  Sum_probs=36.8

Q ss_pred             CCccEEEEECC-CcchHHHHHHHHHCCCeeEEecCCHHHHHHHHH
Q psy9056         218 TPVKTVAVLGA-GLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLG  261 (359)
Q Consensus       218 ~~~~kI~IIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~  261 (359)
                      +.-++|.|.|+ |.+|..++..|++.|++|++.+++++.++...+
T Consensus        42 l~~k~vlITGasggIG~~la~~L~~~G~~V~~~~r~~~~~~~~~~   86 (285)
T 2c07_A           42 GENKVALVTGAGRGIGREIAKMLAKSVSHVICISRTQKSCDSVVD   86 (285)
T ss_dssp             CSSCEEEEESTTSHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHH
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHH
Confidence            44467889986 999999999999999999999999887665443

>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}

Probab=95.37  E-value=0.19  Score=44.85  Aligned_cols=43  Identities=26%  Similarity=0.315  Sum_probs=36.9

Q ss_pred             CccEEEEECC-C-cchHHHHHHHHHCCCeeEEecCCHHHHHHHHH
Q psy9056         219 PVKTVAVLGA-G-LMGAGIAHVTVDKGYNTIVKDSFEKGLARGLG  261 (359)
Q Consensus       219 ~~~kI~IIG~-G-~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~  261 (359)
                      .-++|-|.|+ | -+|..++..|++.|++|++.+++.+.++...+
T Consensus        21 ~~k~vlITGasg~GIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~   65 (266)
T 3o38_A           21 KGKVVLVTAAAGTGIGSTTARRALLEGADVVISDYHERRLGETRD   65 (266)
T ss_dssp             TTCEEEESSCSSSSHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred             CCCEEEEECCCCCchHHHHHHHHHHCCCEEEEecCCHHHHHHHHH
Confidence            3467889998 8 49999999999999999999999988776544

>3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0

Probab=95.34  E-value=0.12  Score=45.49  Aligned_cols=43  Identities=16%  Similarity=0.157  Sum_probs=36.6

Q ss_pred             CccEEEEECC-CcchHHHHHHHHHCCCeeEEecCCHHHHHHHHH
Q psy9056         219 PVKTVAVLGA-GLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLG  261 (359)
Q Consensus       219 ~~~kI~IIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~  261 (359)
                      ..++|-|.|+ |-+|..++..|++.|++|++.+++++.+++...
T Consensus         2 s~k~vlVTGas~GIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~   45 (235)
T 3l6e_A            2 SLGHIIVTGAGSGLGRALTIGLVERGHQVSMMGRRYQRLQQQEL   45 (235)
T ss_dssp             -CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence            4577888986 899999999999999999999999987766443

>1yg6_A ATP-dependent CLP protease proteolytic subunit; endopeptidase CLP, caseinolytic protease, protease TI, heat shock protein F21.5, hydrolase; 1.90A {Escherichia coli} SCOP: c.14.1.1 PDB: 1tyf_A 2fzs_A* 3mt6_R 1yg8_A 3hln_A 2zl2_A 2zl0_A 2zl4_A 2zl3_A 3tt7_A* 3tt6_A 3ktg_A 3kth_A 3kti_A* 3ktj_A* 3ktk_A* 3q7h_A

Probab=95.32  E-value=0.0061  Score=52.84  Aligned_cols=77  Identities=19%  Similarity=0.180  Sum_probs=51.8

Q ss_pred             CCCCchHHHHHHhcCE--EEEecCCceEEeccccCCCCCCCcchH------------------hHHhhhcC--hHHHHHH
Q psy9056           1 MFAEPSLATVALACHY--RIVVKDKKTGLGLPEVMLGLLPGAGGT------------------QRLPKLTA--LPNVLDM   58 (359)
Q Consensus         1 ~~a~GgG~~lalacD~--ria~~~~~~~~~~pe~~~Gi~p~~g~~------------------~~l~~~~g--~~~a~~~   58 (359)
                      +.|..+|.-++++||.  |+|.++  +.+++.....|.   .|-.                  ..+.+..|  .....++
T Consensus        93 g~AaS~g~~Ia~ag~~~~r~a~p~--s~i~ih~p~~~~---~G~~~d~~~~~~~l~~~~~~~~~~~a~~~g~~~~~i~~~  167 (193)
T 1yg6_A           93 GQAASMGAFLLTAGAKGKRFCLPN--SRVMIHQPLGGY---QGQATDIEIHAREILKVKGRMNELMALHTGQSLEQIERD  167 (193)
T ss_dssp             EEEETHHHHHHHTSCTTCEEECTT--CEEEECCCEEEE---EEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred             eeHHHHHHHHHHCCCcCcEEEecC--cEEEEEeccccc---cCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence            3577889999999999  999988  888776654322   1110                  01222223  2344455


Q ss_pred             HhcCCCCCHHHHHHcCCcceecCC
Q psy9056          59 TLTGKTLKADKAKKMGIVDQLVEP   82 (359)
Q Consensus        59 ~ltg~~~~a~eA~~~Glv~~~~~~   82 (359)
                      +-.+..|+++||+++||||++.++
T Consensus       168 ~~~~~~~ta~eA~~~GliD~i~~~  191 (193)
T 1yg6_A          168 TERDRFLSAPEAVEYGLVDSILTH  191 (193)
T ss_dssp             TSSCEEEEHHHHHHHTSSSEECCC
T ss_pred             hcCCeEEcHHHHHHcCCCCEecCC
Confidence            445567899999999999999875

>4ew6_A D-galactose-1-dehydrogenase protein; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium, two domain; 2.30A {Rhizobium etli}

Probab=95.32  E-value=0.024  Score=53.15  Aligned_cols=67  Identities=7%  Similarity=0.068  Sum_probs=46.4

Q ss_pred             CCCCccEEEEECCCcchH-HHHHHHHHC-CCee-EEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhccccccc
Q psy9056         216 PQTPVKTVAVLGAGLMGA-GIAHVTVDK-GYNT-IVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTL  292 (359)
Q Consensus       216 ~~~~~~kI~IIG~G~mG~-~iA~~l~~~-G~~V-~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~  292 (359)
                      +.|+..||+|||+|.||. ..+..+.+. +.+| .++|+++++                              ..+...+
T Consensus        21 ~~M~~~rvgiiG~G~ig~~~~~~~l~~~~~~~lvav~d~~~~~------------------------------~g~~~~~   70 (330)
T 4ew6_A           21 QSMSPINLAIVGVGKIVRDQHLPSIAKNANFKLVATASRHGTV------------------------------EGVNSYT   70 (330)
T ss_dssp             CCCCCEEEEEECCSHHHHHTHHHHHHHCTTEEEEEEECSSCCC------------------------------TTSEEES
T ss_pred             ccCCCceEEEEecCHHHHHHHHHHHHhCCCeEEEEEEeCChhh------------------------------cCCCccC
Confidence            446667999999999998 688888775 5664 567888542                              0122344


Q ss_pred             CcCC-C---CCccEEEEcccCCHH
Q psy9056         293 SYDP-F---KNADMVIEAVFEDIN  312 (359)
Q Consensus       293 ~~~~-l---~~aD~Vi~avp~~~~  312 (359)
                      |+++ +   .+.|+|++|+|....
T Consensus        71 ~~~~ll~~~~~vD~V~i~tp~~~H   94 (330)
T 4ew6_A           71 TIEAMLDAEPSIDAVSLCMPPQYR   94 (330)
T ss_dssp             SHHHHHHHCTTCCEEEECSCHHHH
T ss_pred             CHHHHHhCCCCCCEEEEeCCcHHH
Confidence            5532 3   468999999996553

>2nu8_A Succinyl-COA ligase [ADP-forming] subunit alpha; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.2.1.8 c.23.4.1 PDB: 2nu9_A* 2nu7_A* 2nua_A* 2nu6_A* 2scu_A* 1jll_A* 1scu_A* 1jkj_A* 1cqj_A* 1cqi_A*

Probab=95.26  E-value=0.023  Score=52.30  Aligned_cols=93  Identities=16%  Similarity=0.044  Sum_probs=58.6

Q ss_pred             ccEEEEECC-CcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcCC-C
Q psy9056         220 VKTVAVLGA-GLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDP-F  297 (359)
Q Consensus       220 ~~kI~IIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-l  297 (359)
                      -.||+|+|+ |.||..++..+.+.|++ .++..|+.+...             +            ...+.+..++++ .
T Consensus         7 ~~rVaViG~sG~~G~~~~~~l~~~g~~-~V~~V~p~~~g~-------------~------------~~G~~vy~sl~el~   60 (288)
T 2nu8_A            7 NTKVICQGFTGSQGTFHSEQAIAYGTK-MVGGVTPGKGGT-------------T------------HLGLPVFNTVREAV   60 (288)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHHTCE-EEEEECTTCTTC-------------E------------ETTEEEESSHHHHH
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCe-EEEEeCCCcccc-------------e------------eCCeeccCCHHHHh
Confidence            368999998 99999999999988998 455556542100             0            012333344433 3


Q ss_pred             C--CccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCcHHH
Q psy9056         298 K--NADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPITK  342 (359)
Q Consensus       298 ~--~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~  342 (359)
                      .  ++|++++++|...  ..+++.+..+. .-+.+| ..+.+++.++
T Consensus        61 ~~~~~D~viI~tP~~~--~~~~~~ea~~~-Gi~~iV-i~t~G~~~~~  103 (288)
T 2nu8_A           61 AATGATASVIYVPAPF--CKDSILEAIDA-GIKLII-TITEGIPTLD  103 (288)
T ss_dssp             HHHCCCEEEECCCGGG--HHHHHHHHHHT-TCSEEE-ECCCCCCHHH
T ss_pred             hcCCCCEEEEecCHHH--HHHHHHHHHHC-CCCEEE-EECCCCCHHH
Confidence            4  7999999999776  34666665543 223333 4666776643

>1j5p_A Aspartate dehydrogenase; TM1643, structural genomics, JCSG, protein structure initiative, joint center for structural G oxidoreductase; HET: NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3 PDB: 1h2h_A*

Probab=95.26  E-value=0.038  Score=49.85  Aligned_cols=80  Identities=13%  Similarity=0.102  Sum_probs=51.6

Q ss_pred             ccEEEEECCCcchHHHHHHHHHCCCee-EEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcC-CC
Q psy9056         220 VKTVAVLGAGLMGAGIAHVTVDKGYNT-IVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYD-PF  297 (359)
Q Consensus       220 ~~kI~IIG~G~mG~~iA~~l~~~G~~V-~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~l  297 (359)
                      -++|+++|+|+||..++..  . ++++ .+|+   ++..                 .+          .+..++|.+ .+
T Consensus        12 ~~rV~i~G~GaIG~~v~~~--~-~leLv~v~~---~k~g-----------------el----------gv~a~~d~d~ll   58 (253)
T 1j5p_A           12 HMTVLIIGMGNIGKKLVEL--G-NFEKIYAYD---RISK-----------------DI----------PGVVRLDEFQVP   58 (253)
T ss_dssp             CCEEEEECCSHHHHHHHHH--S-CCSEEEEEC---SSCC-----------------CC----------SSSEECSSCCCC
T ss_pred             cceEEEECcCHHHHHHHhc--C-CcEEEEEEe---cccc-----------------cc----------CceeeCCHHHHh
Confidence            4699999999999999998  4 7875 6667   2100                 00          234566774 45


Q ss_pred             CCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCC
Q psy9056         298 KNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSA  337 (359)
Q Consensus       298 ~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~  337 (359)
                      .++|+|++|.+  ....++   .+.+.+..++=+++.+.+
T Consensus        59 a~pD~VVe~A~--~~av~e---~~~~iL~aG~dvv~~S~g   93 (253)
T 1j5p_A           59 SDVSTVVECAS--PEAVKE---YSLQILKNPVNYIIISTS   93 (253)
T ss_dssp             TTCCEEEECSC--HHHHHH---HHHHHTTSSSEEEECCGG
T ss_pred             hCCCEEEECCC--HHHHHH---HHHHHHHCCCCEEEcChh
Confidence            79999999994  322222   355566676655444443

>3p2l_A ATP-dependent CLP protease proteolytic subunit; structural genomics, center for structural genomics of infec diseases, csgid; 2.29A {Francisella tularensis subsp} SCOP: c.14.1.1

Probab=95.20  E-value=0.0042  Score=54.24  Aligned_cols=77  Identities=19%  Similarity=0.255  Sum_probs=50.7

Q ss_pred             CCCCchHHHHHHhcCE--EEEecCCceEEeccccCCCCCCCcchHh------------------HHhhhcC--hHHHHHH
Q psy9056           1 MFAEPSLATVALACHY--RIVVKDKKTGLGLPEVMLGLLPGAGGTQ------------------RLPKLTA--LPNVLDM   58 (359)
Q Consensus         1 ~~a~GgG~~lalacD~--ria~~~~~~~~~~pe~~~Gi~p~~g~~~------------------~l~~~~g--~~~a~~~   58 (359)
                      |.|..+|.-|+++||.  |++.++  +++.+....-|.   .|-..                  .+.+..|  .....++
T Consensus        97 G~AaS~g~~i~~ag~~g~r~~~p~--a~imiH~p~~~~---~G~a~di~~~a~~l~~~~~~~~~~ya~~tG~~~e~i~~~  171 (201)
T 3p2l_A           97 GLAASMGSLLLAGGAKGKRYSLPS--SQIMIHQPLGGF---RGQASDIEIHAKNILRIKDRLNKVLAHHTGQDLETIVKD  171 (201)
T ss_dssp             EEEETHHHHHHHTSSTTCEEECTT--CEEEECCCEEEE---EEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred             CEehhHHHHHHHcCccCCEEEcCC--CeEEEecccccc---CCCHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHH
Confidence            3577889999999998  999987  887666554221   11100                  1112222  2344444


Q ss_pred             HhcCCCCCHHHHHHcCCcceecCC
Q psy9056          59 TLTGKTLKADKAKKMGIVDQLVEP   82 (359)
Q Consensus        59 ~ltg~~~~a~eA~~~Glv~~~~~~   82 (359)
                      +-....++++||+++||||+++++
T Consensus       172 ~~~~~~lta~EA~e~GliD~I~~~  195 (201)
T 3p2l_A          172 TDRDNFMMADEAKAYGLIDHVIES  195 (201)
T ss_dssp             TSSCEEEEHHHHHHHTSCSEECCC
T ss_pred             hhcCeeecHHHHHHcCCccEecCC
Confidence            444456899999999999999986

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}

Probab=95.20  E-value=0.012  Score=53.48  Aligned_cols=38  Identities=13%  Similarity=0.198  Sum_probs=33.9

Q ss_pred             CCccEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHH
Q psy9056         218 TPVKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKG  255 (359)
Q Consensus       218 ~~~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~  255 (359)
                      |.+++|.|.|+|.+|+.++..|.+.|++|++++++++.
T Consensus         1 M~~~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~~~   38 (286)
T 3gpi_A            1 MSLSKILIAGCGDLGLELARRLTAQGHEVTGLRRSAQP   38 (286)
T ss_dssp             -CCCCEEEECCSHHHHHHHHHHHHTTCCEEEEECTTSC
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCccc
Confidence            45679999999999999999999999999999998653

>2c2x_A Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate cyclohydrolase; NADP; 2.0A {Mycobacterium tuberculosis} PDB: 2c2y_A

Probab=95.19  E-value=0.01  Score=54.30  Aligned_cols=92  Identities=16%  Similarity=0.169  Sum_probs=62.0

Q ss_pred             hhhHHHHHhHhhhhhhhhcCCCCCCCCccEEEEECCCcc-hHHHHHHHHHC--CCeeEEecCCHHHHHHHHHHHHHhHHH
Q psy9056         193 PQSKGLMGLFRAQTECKKNRLGKPQTPVKTVAVLGAGLM-GAGIAHVTVDK--GYNTIVKDSFEKGLARGLGQIKTGLDG  269 (359)
Q Consensus       193 ~~~~~~~~af~~k~~~~~~~~~~~~~~~~kI~IIG~G~m-G~~iA~~l~~~--G~~V~l~d~~~~~l~~~~~~~~~~l~~  269 (359)
                      |-+-+|+-.++++..  .      +.+=+++.|||.|.+ |..+|..|.+.  |..|++.++..+.++            
T Consensus       139 PcTp~gi~~ll~~~~--i------~l~gk~vvVvG~s~iVG~p~A~lL~~~g~~atVtv~h~~t~~L~------------  198 (281)
T 2c2x_A          139 PCTPRGIVHLLRRYD--I------SIAGAHVVVIGRGVTVGRPLGLLLTRRSENATVTLCHTGTRDLP------------  198 (281)
T ss_dssp             CHHHHHHHHHHHHTT--C------CCTTCEEEEECCCTTTHHHHHHHHTSTTTCCEEEEECTTCSCHH------------
T ss_pred             CChHHHHHHHHHHcC--C------CCCCCEEEEECCCcHHHHHHHHHHhcCCCCCEEEEEECchhHHH------------
Confidence            334555555555532  0      123379999999975 99999999999  889999975543211            


Q ss_pred             HHhhccCChHHHHhhhcccccccCcCCCCCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCC
Q psy9056         270 AVKRKKMSALDRDRYLASLVGTLSYDPFKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTS  336 (359)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts  336 (359)
                                               +.+.++|+||-+++...-+.       .+.++++.+|++...
T Consensus       199 -------------------------~~~~~ADIVI~Avg~p~~I~-------~~~vk~GavVIDVgi  233 (281)
T 2c2x_A          199 -------------------------ALTRQADIVVAAVGVAHLLT-------ADMVRPGAAVIDVGV  233 (281)
T ss_dssp             -------------------------HHHTTCSEEEECSCCTTCBC-------GGGSCTTCEEEECCE
T ss_pred             -------------------------HHHhhCCEEEECCCCCcccC-------HHHcCCCcEEEEccC
Confidence                                     24688999999997443122       233578888887553

>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*

Probab=95.19  E-value=0.014  Score=54.54  Aligned_cols=36  Identities=25%  Similarity=0.353  Sum_probs=31.4

Q ss_pred             CCccEEEEECC-CcchHHHHHHHHHCCCeeEEecCCH
Q psy9056         218 TPVKTVAVLGA-GLMGAGIAHVTVDKGYNTIVKDSFE  253 (359)
Q Consensus       218 ~~~~kI~IIG~-G~mG~~iA~~l~~~G~~V~l~d~~~  253 (359)
                      |..++|.|.|+ |.+|..++..|++.|++|++++|++
T Consensus         8 M~~~~IlVtGatG~iG~~l~~~L~~~g~~V~~l~R~~   44 (346)
T 3i6i_A            8 SPKGRVLIAGATGFIGQFVATASLDAHRPTYILARPG   44 (346)
T ss_dssp             ---CCEEEECTTSHHHHHHHHHHHHTTCCEEEEECSS
T ss_pred             CCCCeEEEECCCcHHHHHHHHHHHHCCCCEEEEECCC
Confidence            55578999998 9999999999999999999999976

>3i23_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Enterococcus faecalis} PDB: 3fd8_A* 3hnp_A

Probab=95.18  E-value=0.032  Score=52.55  Aligned_cols=71  Identities=7%  Similarity=0.032  Sum_probs=43.5

Q ss_pred             cEEEEECCCcchHH-HHHHHHHC-CCee-EEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcCC-
Q psy9056         221 KTVAVLGAGLMGAG-IAHVTVDK-GYNT-IVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDP-  296 (359)
Q Consensus       221 ~kI~IIG~G~mG~~-iA~~l~~~-G~~V-~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-  296 (359)
                      .||+|||+|.||.. .+..+.+. +++| .++|++  ..+...+...                    ...+...+|+++ 
T Consensus         3 ~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~--~~~~~a~~~~--------------------~~~~~~~~~~~~l   60 (349)
T 3i23_A            3 VKMGFIGFGKSANRYHLPYVMIRETLEVKTIFDLH--VNEKAAAPFK--------------------EKGVNFTADLNEL   60 (349)
T ss_dssp             EEEEEECCSHHHHHTTHHHHTTCTTEEEEEEECTT--CCHHHHHHHH--------------------TTTCEEESCTHHH
T ss_pred             eEEEEEccCHHHHHHHHHHHhhCCCeEEEEEECCC--HHHHHHHhhC--------------------CCCCeEECCHHHH
Confidence            48999999999984 55555544 6676 477888  2122111000                    012334556633 


Q ss_pred             CC--CccEEEEcccCCHHH
Q psy9056         297 FK--NADMVIEAVFEDINI  313 (359)
Q Consensus       297 l~--~aD~Vi~avp~~~~~  313 (359)
                      +.  +.|+|++|+|.+...
T Consensus        61 l~~~~~D~V~i~tp~~~h~   79 (349)
T 3i23_A           61 LTDPEIELITICTPAHTHY   79 (349)
T ss_dssp             HSCTTCCEEEECSCGGGHH
T ss_pred             hcCCCCCEEEEeCCcHHHH
Confidence            33  589999999987753

>2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A*

Probab=95.14  E-value=0.028  Score=49.88  Aligned_cols=41  Identities=27%  Similarity=0.272  Sum_probs=35.9

Q ss_pred             cEEEEECC-CcchHHHHHHHHHCCCeeEEecCCHHHHHHHHH
Q psy9056         221 KTVAVLGA-GLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLG  261 (359)
Q Consensus       221 ~kI~IIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~  261 (359)
                      ++|-|.|+ |.+|..++..|++.|++|++.+++++.++...+
T Consensus        12 k~vlITGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~   53 (254)
T 2wsb_A           12 ACAAVTGAGSGIGLEICRAFAASGARLILIDREAAALDRAAQ   53 (254)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence            67888886 999999999999999999999999987766544

>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}

Probab=95.14  E-value=0.012  Score=55.28  Aligned_cols=32  Identities=25%  Similarity=0.362  Sum_probs=30.2

Q ss_pred             EEEECCCcchHHHHHHHHHCCCeeEEecCCHH
Q psy9056         223 VAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEK  254 (359)
Q Consensus       223 I~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~  254 (359)
                      |.|||+|..|.+.|..|+++|++|+++|+.++
T Consensus         7 ViIVGaGpaGl~~A~~La~~G~~V~v~Er~~~   38 (397)
T 3oz2_A            7 VLVVGGGPGGSTAARYAAKYGLKTLMIEKRPE   38 (397)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred             EEEECcCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence            99999999999999999999999999998653

>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0

Probab=95.11  E-value=0.22  Score=43.78  Aligned_cols=44  Identities=25%  Similarity=0.250  Sum_probs=37.4

Q ss_pred             CccEEEEECC-CcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHH
Q psy9056         219 PVKTVAVLGA-GLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQ  262 (359)
Q Consensus       219 ~~~kI~IIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~  262 (359)
                      +-++|-|.|+ |.+|..++..|++.|++|++.+++++.++...+.
T Consensus        13 ~~k~vlITGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~   57 (247)
T 3i1j_A           13 KGRVILVTGAARGIGAAAARAYAAHGASVVLLGRTEASLAEVSDQ   57 (247)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEecCHHHHHHHHHH
Confidence            3367888886 9999999999999999999999999887765543

>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5}

Probab=95.09  E-value=0.2  Score=44.70  Aligned_cols=43  Identities=21%  Similarity=0.112  Sum_probs=36.8

Q ss_pred             CccEEEEECC-CcchHHHHHHHHHCCCeeEEecCCHHHHHHHHH
Q psy9056         219 PVKTVAVLGA-GLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLG  261 (359)
Q Consensus       219 ~~~kI~IIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~  261 (359)
                      .-++|-|.|+ |.+|..++..|++.|++|++.+++++.++....
T Consensus        28 ~~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~   71 (262)
T 3rkr_A           28 SGQVAVVTGASRGIGAAIARKLGSLGARVVLTARDVEKLRAVER   71 (262)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence            3467888886 999999999999999999999999988776544

>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}

Probab=95.07  E-value=0.16  Score=45.72  Aligned_cols=43  Identities=23%  Similarity=0.247  Sum_probs=35.5

Q ss_pred             cEEEEE-C-CCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHH
Q psy9056         221 KTVAVL-G-AGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQI  263 (359)
Q Consensus       221 ~kI~II-G-~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~  263 (359)
                      .|++|| | ++-+|.++|..|++.|.+|++.|++++.+++..+.+
T Consensus         9 gKvalVTGas~GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~l   53 (255)
T 4g81_D            9 GKTALVTGSARGLGFAYAEGLAAAGARVILNDIRATLLAESVDTL   53 (255)
T ss_dssp             TCEEEETTCSSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH
Confidence            356666 5 588999999999999999999999999887765543

>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens}

Probab=95.04  E-value=0.012  Score=54.98  Aligned_cols=33  Identities=24%  Similarity=0.247  Sum_probs=31.0

Q ss_pred             ccEEEEECCCcchHHHHHHHHH---CCCeeEEecCC
Q psy9056         220 VKTVAVLGAGLMGAGIAHVTVD---KGYNTIVKDSF  252 (359)
Q Consensus       220 ~~kI~IIG~G~mG~~iA~~l~~---~G~~V~l~d~~  252 (359)
                      |.+|.|||+|..|.+.|..|++   .|++|+++|.+
T Consensus         1 m~dV~IIGaG~aGl~~A~~L~~~~~~G~~V~v~Ek~   36 (342)
T 3qj4_A            1 MAQVLIVGAGMTGSLCAALLRRQTSGPLYLAVWDKA   36 (342)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHSCC-CCEEEEEECSS
T ss_pred             CCcEEEECCcHHHHHHHHHHHhhccCCceEEEEECC
Confidence            4689999999999999999999   99999999976

>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2

Probab=94.98  E-value=0.42  Score=42.82  Aligned_cols=44  Identities=18%  Similarity=0.089  Sum_probs=37.0

Q ss_pred             CCccEEEEECC-CcchHHHHHHHHHCCCeeEEecCCHHHHHHHHH
Q psy9056         218 TPVKTVAVLGA-GLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLG  261 (359)
Q Consensus       218 ~~~~kI~IIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~  261 (359)
                      +.-++|-|.|+ |.+|..++..|++.|++|++.+++++.++....
T Consensus        29 l~~k~vlITGasggIG~~la~~L~~~G~~V~~~~r~~~~~~~~~~   73 (272)
T 1yb1_A           29 VTGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAA   73 (272)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred             cCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEEcCHHHHHHHHH
Confidence            34468889986 999999999999999999999999887665443

>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=94.93  E-value=0.33  Score=43.36  Aligned_cols=41  Identities=27%  Similarity=0.347  Sum_probs=35.4

Q ss_pred             cEEEEECC-CcchHHHHHHHHHCCCeeEEecCCHHHHHHHHH
Q psy9056         221 KTVAVLGA-GLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLG  261 (359)
Q Consensus       221 ~kI~IIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~  261 (359)
                      ++|-|.|+ |-+|..+|..|++.|++|++.+++++.++....
T Consensus        11 k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~   52 (262)
T 3pk0_A           11 RSVVVTGGTKGIGRGIATVFARAGANVAVAGRSTADIDACVA   52 (262)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence            56777775 899999999999999999999999988776544

>3e5r_O PP38, glyceraldehyde-3-phosphate dehydrogenase, cytosolic; GAPDH, RICE, oxidoreductase, cytoplasm, glycolysis, NAD; HET: NAD; 2.30A {Oryza sativa subsp} PDB: 3e6a_O

Probab=94.92  E-value=0.033  Score=52.48  Aligned_cols=29  Identities=17%  Similarity=0.318  Sum_probs=24.0

Q ss_pred             cEEEEECCCcchHHHHHHHHHC-CCeeEEe
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDK-GYNTIVK  249 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~-G~~V~l~  249 (359)
                      .||+|+|+|.+|..+.+.+.++ +.+|+.+
T Consensus         4 ikVgI~G~GrIGr~l~R~l~~~p~vevvaI   33 (337)
T 3e5r_O            4 IKIGINGFGRIGRLVARVALQSEDVELVAV   33 (337)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTCSSEEEEEE
T ss_pred             eEEEEECcCHHHHHHHHHHhCCCCeEEEEE
Confidence            4899999999999999998876 4565544

>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*

Probab=94.91  E-value=0.043  Score=51.11  Aligned_cols=36  Identities=22%  Similarity=0.329  Sum_probs=32.3

Q ss_pred             CccEEEEECC-CcchHHHHHHHHHCCCeeEEecCCHH
Q psy9056         219 PVKTVAVLGA-GLMGAGIAHVTVDKGYNTIVKDSFEK  254 (359)
Q Consensus       219 ~~~kI~IIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~  254 (359)
                      ..++|.|.|+ |.+|+.++..|.+.|++|+++++++.
T Consensus        24 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~   60 (351)
T 3ruf_A           24 SPKTWLITGVAGFIGSNLLEKLLKLNQVVIGLDNFST   60 (351)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSS
T ss_pred             CCCeEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence            3479999996 99999999999999999999999654

>1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A*

Probab=94.91  E-value=0.085  Score=47.35  Aligned_cols=31  Identities=26%  Similarity=0.314  Sum_probs=26.2

Q ss_pred             EEEEECC-CcchHHHHHHHHHC-CCeeE-EecCC
Q psy9056         222 TVAVLGA-GLMGAGIAHVTVDK-GYNTI-VKDSF  252 (359)
Q Consensus       222 kI~IIG~-G~mG~~iA~~l~~~-G~~V~-l~d~~  252 (359)
                      ||+|+|+ |.||..++..+.+. |++|+ ++|++
T Consensus         2 kV~V~Ga~G~mG~~i~~~~~~~~~~elva~~d~~   35 (245)
T 1p9l_A            2 RVGVLGAKGKVGTTMVRAVAAADDLTLSAELDAG   35 (245)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHCTTCEEEEEECTT
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCCCEEEEEEccC
Confidence            8999997 99999999998876 88876 56764

>2ph3_A 3-oxoacyl-[acyl carrier protein] reductase; TTHA0415, structural genomics, southea collaboratory for structural genomics, secsg; 1.91A {Thermus thermophilus HB8}

Probab=94.89  E-value=0.18  Score=44.19  Aligned_cols=40  Identities=15%  Similarity=0.219  Sum_probs=34.4

Q ss_pred             cEEEEECC-CcchHHHHHHHHHCCCeeEEe-cCCHHHHHHHH
Q psy9056         221 KTVAVLGA-GLMGAGIAHVTVDKGYNTIVK-DSFEKGLARGL  260 (359)
Q Consensus       221 ~kI~IIG~-G~mG~~iA~~l~~~G~~V~l~-d~~~~~l~~~~  260 (359)
                      ++|.|.|+ |.+|..++..|++.|++|++. +++++.++...
T Consensus         2 k~vlITGasggiG~~~a~~l~~~G~~v~~~~~r~~~~~~~~~   43 (245)
T 2ph3_A            2 RKALITGASRGIGRAIALRLAEDGFALAIHYGQNREKAEEVA   43 (245)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHTTTCEEEEEESSCHHHHHHHH
T ss_pred             CEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHH
Confidence            57888886 999999999999999999998 99988766543

>1xyg_A Putative N-acetyl-gamma-glutamyl-phosphate reduct; structural genomics, protein structure initiative, CENT eukaryotic structural genomics; 2.19A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.1 PDB: 2q49_A 2cvo_A

Probab=94.88  E-value=0.047  Score=51.87  Aligned_cols=101  Identities=16%  Similarity=0.223  Sum_probs=56.8

Q ss_pred             CCccEEEEEC-CCcchHHHHHHHHHCCC-eeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcC
Q psy9056         218 TPVKTVAVLG-AGLMGAGIAHVTVDKGY-NTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYD  295 (359)
Q Consensus       218 ~~~~kI~IIG-~G~mG~~iA~~l~~~G~-~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~  295 (359)
                      |...||+|+| .|++|..+.+.|.++.. +|+.+....+.-..    +......+  .+..        ...+.+.. .+
T Consensus        14 M~~~kV~IiGAtG~iG~~llr~L~~~p~~elvai~~~~~~g~~----~~~~~~~~--~~~v--------~~dl~~~~-~~   78 (359)
T 1xyg_A           14 EKDIRIGLLGASGYTGAEIVRLLANHPHFQVTLMTADRKAGQS----MESVFPHL--RAQK--------LPTLVSVK-DA   78 (359)
T ss_dssp             -CCEEEEEECCSSHHHHHHHHHHHTCSSEEEEEEBCSTTTTSC----HHHHCGGG--TTSC--------CCCCBCGG-GC
T ss_pred             ccCcEEEEECcCCHHHHHHHHHHHcCCCcEEEEEeCchhcCCC----HHHhCchh--cCcc--------cccceecc-hh
Confidence            4446899999 79999999999988754 66666433211000    00000000  0000        01122222 22


Q ss_pred             CCCCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCc
Q psy9056         296 PFKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIP  339 (359)
Q Consensus       296 ~l~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~  339 (359)
                      ...++|+||+|+|.....  +.   ...+ ..++.++++++...
T Consensus        79 ~~~~vDvVf~atp~~~s~--~~---a~~~-~aG~~VId~sa~~R  116 (359)
T 1xyg_A           79 DFSTVDAVFCCLPHGTTQ--EI---IKEL-PTALKIVDLSADFR  116 (359)
T ss_dssp             CGGGCSEEEECCCTTTHH--HH---HHTS-CTTCEEEECSSTTT
T ss_pred             HhcCCCEEEEcCCchhHH--HH---HHHH-hCCCEEEECCcccc
Confidence            346899999999977743  22   2334 56788888887653

>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*

Probab=94.88  E-value=0.0099  Score=56.87  Aligned_cols=32  Identities=31%  Similarity=0.392  Sum_probs=30.8

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCC-eeEEecCC
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGY-NTIVKDSF  252 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~-~V~l~d~~  252 (359)
                      .||.|+|+|.+|..+|..+...|. +|+++|++
T Consensus       193 ~kVVv~GAGaAG~~iAkll~~~G~~~I~v~Dr~  225 (388)
T 1vl6_A          193 VKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRK  225 (388)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCEEEEEETT
T ss_pred             cEEEEECCCHHHHHHHHHHHhCCCCeEEEEECC
Confidence            699999999999999999999998 89999998

>4gm2_A ATP-dependent CLP protease proteolytic subunit; structural genomics, structural genomics consortium, SGC, PR hydrolase; 2.80A {Plasmodium falciparum} PDB: 4hnk_A

Probab=94.87  E-value=0.028  Score=49.04  Aligned_cols=80  Identities=18%  Similarity=0.150  Sum_probs=51.5

Q ss_pred             CCCCchHHHHHHhcC--EEEEecCCceEEeccccCCCCCCCc-c---------------hHhHHhhhcC--hHHHHHHHh
Q psy9056           1 MFAEPSLATVALACH--YRIVVKDKKTGLGLPEVMLGLLPGA-G---------------GTQRLPKLTA--LPNVLDMTL   60 (359)
Q Consensus         1 ~~a~GgG~~lalacD--~ria~~~~~~~~~~pe~~~Gi~p~~-g---------------~~~~l~~~~g--~~~a~~~~l   60 (359)
                      |.|.+.|..|++++|  .|++.++  +++-+-...-|..-+. .               ....+.+..|  .....+++-
T Consensus       105 G~AaS~as~il~aG~~gkR~~lP~--a~iMIHqP~~~~~~G~a~di~i~a~el~~~~~~i~~iya~~TG~~~e~I~~~m~  182 (205)
T 4gm2_A          105 GKAYGIACILASSGKKGYRFSLKN--SSFCLNQSYSIIPFNQATNIEIQNKEIMNTKKKVIEIISKNTEKDTNVISNVLE  182 (205)
T ss_dssp             EEEETHHHHHHTTSCTTCEEECTT--CEEEECCCCCCCCSSCCSCHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHTT
T ss_pred             eeehhHHHHHHhcCCCCCEEecCC--CEEEEecCcccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhc
Confidence            457788999999999  5999988  8887766654431110 0               0111122222  123334444


Q ss_pred             cCCCCCHHHHHHcCCcceecCC
Q psy9056          61 TGKTLKADKAKKMGIVDQLVEP   82 (359)
Q Consensus        61 tg~~~~a~eA~~~Glv~~~~~~   82 (359)
                      ....++|+||+++||||++++.
T Consensus       183 rd~~msa~EA~eyGlID~V~~~  204 (205)
T 4gm2_A          183 RDKYFNADEAVDFKLIDHILEK  204 (205)
T ss_dssp             SCEEEEHHHHHHTTSCSEECCC
T ss_pred             CCcccCHHHHHHcCCccEeecC
Confidence            4556999999999999999875

>3mtj_A Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, structural genomics, midwest cente structural genomics; 2.15A {Thiobacillus denitrificans}

Probab=94.85  E-value=0.041  Score=53.78  Aligned_cols=66  Identities=18%  Similarity=0.079  Sum_probs=44.0

Q ss_pred             CccEEEEECCCcchHHHHHHHHHC----------CCe-eEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcc
Q psy9056         219 PVKTVAVLGAGLMGAGIAHVTVDK----------GYN-TIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLAS  287 (359)
Q Consensus       219 ~~~kI~IIG~G~mG~~iA~~l~~~----------G~~-V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  287 (359)
                      +.-+|+|||+|.+|..++..+.++          +.+ +.++|+++++.+..           .              +.
T Consensus         9 k~irIgIIG~G~VG~~~~~~L~~~~~~l~~~~g~~i~lvaV~d~~~~~~~~~-----------~--------------~~   63 (444)
T 3mtj_A            9 KPIHVGLLGLGTVGGGTLTVLRRNAEEITRRAGREIRVVRAAVRNLDKAEAL-----------A--------------GG   63 (444)
T ss_dssp             SCEEEEEECCHHHHHHHHHHHHHTHHHHHHHHSSCEEEEEEECSCHHHHHHH-----------H--------------TT
T ss_pred             CcccEEEECCCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEECCHHHhhhh-----------c--------------cc
Confidence            335899999999999998877642          334 45679988754321           0              11


Q ss_pred             cccccCcCC-C--CCccEEEEcccC
Q psy9056         288 LVGTLSYDP-F--KNADMVIEAVFE  309 (359)
Q Consensus       288 i~~~~~~~~-l--~~aD~Vi~avp~  309 (359)
                      ..+++|++. +  .+.|+|++|+|.
T Consensus        64 ~~~~~d~~ell~d~diDvVve~tp~   88 (444)
T 3mtj_A           64 LPLTTNPFDVVDDPEIDIVVELIGG   88 (444)
T ss_dssp             CCEESCTHHHHTCTTCCEEEECCCS
T ss_pred             CcccCCHHHHhcCCCCCEEEEcCCC
Confidence            234556532 3  468999999985

>3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A

Probab=94.85  E-value=0.049  Score=51.66  Aligned_cols=33  Identities=24%  Similarity=0.444  Sum_probs=30.4

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCC-eeEEecCCH
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGY-NTIVKDSFE  253 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~-~V~l~d~~~  253 (359)
                      .+|.|||+|.+|+.++..|+.+|. +++++|.+.
T Consensus       119 ~~VlvvG~GglGs~va~~La~aGvg~i~lvD~D~  152 (353)
T 3h5n_A          119 AKVVILGCGGIGNHVSVILATSGIGEIILIDNDQ  152 (353)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEEECCB
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCCeEEEECCCc
Confidence            689999999999999999999997 799998764

>3hsk_A Aspartate-semialdehyde dehydrogenase; candida albicans NADP complex, amino-acid biosynthesis; HET: NAP; 2.20A {Candida albicans}

Probab=94.84  E-value=0.035  Score=53.16  Aligned_cols=109  Identities=17%  Similarity=0.217  Sum_probs=56.7

Q ss_pred             CCCCccEEEEECC-CcchHHHHHHHHHCC-CeeE-EecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccc-
Q psy9056         216 PQTPVKTVAVLGA-GLMGAGIAHVTVDKG-YNTI-VKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGT-  291 (359)
Q Consensus       216 ~~~~~~kI~IIG~-G~mG~~iA~~l~~~G-~~V~-l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~-  291 (359)
                      ++|.+.||+|||+ |+.|..+...|.++- .+|. ++.-+...=+.    +.+... ......+....     ..+.+. 
T Consensus        15 ~~M~~~kVaIvGAtG~vG~ell~lL~~hp~~el~~l~aS~~saGk~----~~~~~~-~~~~~~~p~~~-----~~~~v~~   84 (381)
T 3hsk_A           15 SHMSVKKAGVLGATGSVGQRFILLLSKHPEFEIHALGASSRSAGKK----YKDAAS-WKQTETLPETE-----QDIVVQE   84 (381)
T ss_dssp             ---CCEEEEEETTTSHHHHHHHHHHTTCSSEEEEEEEECTTTTTSB----HHHHCC-CCCSSCCCHHH-----HTCBCEE
T ss_pred             ccCCccEEEEECCCChHHHHHHHHHHcCCCceEEEeeccccccCCC----HHHhcc-ccccccccccc-----ccceEEe
Confidence            3477789999995 999999999888764 3564 33211110000    000000 00000000000     012221 


Q ss_pred             cCcC-CCCCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCc
Q psy9056         292 LSYD-PFKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIP  339 (359)
Q Consensus       292 ~~~~-~l~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~  339 (359)
                      .+.+ .+.++|+||.|+|...  -+++...+.+   .++.++++++...
T Consensus        85 ~~~~~~~~~~Dvvf~alp~~~--s~~~~~~~~~---~G~~VIDlSa~fR  128 (381)
T 3hsk_A           85 CKPEGNFLECDVVFSGLDADV--AGDIEKSFVE---AGLAVVSNAKNYR  128 (381)
T ss_dssp             SSSCTTGGGCSEEEECCCHHH--HHHHHHHHHH---TTCEEEECCSTTT
T ss_pred             CchhhhcccCCEEEECCChhH--HHHHHHHHHh---CCCEEEEcCCccc
Confidence            1222 5689999999998655  3455555543   5788888887653

>2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae}

Probab=94.83  E-value=0.025  Score=55.73  Aligned_cols=42  Identities=17%  Similarity=0.122  Sum_probs=36.2

Q ss_pred             CCccEEEEECCCcchHHHHHHHHHC-CCeeEEecCCHHHHHHH
Q psy9056         218 TPVKTVAVLGAGLMGAGIAHVTVDK-GYNTIVKDSFEKGLARG  259 (359)
Q Consensus       218 ~~~~kI~IIG~G~mG~~iA~~l~~~-G~~V~l~d~~~~~l~~~  259 (359)
                      ..+++|.|+|+|.+|..++..|++. |++|++++|++++++..
T Consensus        21 l~~k~VlIiGAGgiG~aia~~L~~~~g~~V~v~~R~~~ka~~l   63 (467)
T 2axq_A           21 HMGKNVLLLGSGFVAQPVIDTLAANDDINVTVACRTLANAQAL   63 (467)
T ss_dssp             --CEEEEEECCSTTHHHHHHHHHTSTTEEEEEEESSHHHHHHH
T ss_pred             CCCCEEEEECChHHHHHHHHHHHhCCCCeEEEEECCHHHHHHH
Confidence            4567999999999999999999998 78999999999876653

>1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative deamination mechanism, oxidoreductase; HET: PHE NAD; 1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB: 1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A*

Probab=94.83  E-value=0.049  Score=51.62  Aligned_cols=37  Identities=27%  Similarity=0.375  Sum_probs=33.9

Q ss_pred             CccEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHH
Q psy9056         219 PVKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKG  255 (359)
Q Consensus       219 ~~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~  255 (359)
                      .=++|+|+|.|++|..+|..+...|.+|+++|+++++
T Consensus       174 ~GktV~I~G~GnVG~~~A~~l~~~GakVvvsD~~~~~  210 (355)
T 1c1d_A          174 DGLTVLVQGLGAVGGSLASLAAEAGAQLLVADTDTER  210 (355)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHH
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCCEEEEEeCCccH
Confidence            3379999999999999999999999999999999764

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=94.80  E-value=0.031  Score=48.20  Aligned_cols=37  Identities=16%  Similarity=0.276  Sum_probs=33.5

Q ss_pred             cEEEEECC-CcchHHHHHHHHHCCCeeEEecCCHHHHH
Q psy9056         221 KTVAVLGA-GLMGAGIAHVTVDKGYNTIVKDSFEKGLA  257 (359)
Q Consensus       221 ~kI~IIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~l~  257 (359)
                      +||.|.|+ |.+|..++..|++.|++|++++|++++++
T Consensus         1 MkvlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~   38 (221)
T 3ew7_A            1 MKIGIIGATGRAGSRILEEAKNRGHEVTAIVRNAGKIT   38 (221)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCSHHHH
T ss_pred             CeEEEEcCCchhHHHHHHHHHhCCCEEEEEEcCchhhh
Confidence            37999996 99999999999999999999999987654

>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=94.79  E-value=0.37  Score=43.02  Aligned_cols=42  Identities=19%  Similarity=0.274  Sum_probs=36.2

Q ss_pred             cEEEEECC-CcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHH
Q psy9056         221 KTVAVLGA-GLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQ  262 (359)
Q Consensus       221 ~kI~IIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~  262 (359)
                      +++-|.|+ |-+|..+|..|++.|++|++.+++++.++.....
T Consensus        12 k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~   54 (264)
T 3ucx_A           12 KVVVISGVGPALGTTLARRCAEQGADLVLAARTVERLEDVAKQ   54 (264)
T ss_dssp             CEEEEESCCTTHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH
T ss_pred             cEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHH
Confidence            56778886 8899999999999999999999999887765543

>1u8f_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase, liver; rossmann fold, oxidoreductase, mammalian GAPDH; HET: NAD; 1.75A {Homo sapiens} SCOP: c.2.1.3 d.81.1.1 PDB: 1znq_O* 1j0x_O* 3gpd_R* 1dss_G* 1crw_G* 1szj_G* 1ihx_A* 1ihy_A* 1gpd_G* 4gpd_1

Probab=94.73  E-value=0.059  Score=50.68  Aligned_cols=38  Identities=16%  Similarity=0.169  Sum_probs=28.3

Q ss_pred             cEEEEECCCcchHHHHHHHHHC-CCeeEEe-cC--CHHHHHH
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDK-GYNTIVK-DS--FEKGLAR  258 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~-G~~V~l~-d~--~~~~l~~  258 (359)
                      .||+|+|+|.+|..+++.+.++ +.+|+.+ |+  +++.+..
T Consensus         4 ikVgI~G~G~iGr~~~R~l~~~~~vevvaI~d~~~~~~~~a~   45 (335)
T 1u8f_O            4 VKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLNYMVY   45 (335)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSEEEEEECSSSCHHHHHH
T ss_pred             eEEEEEccCHHHHHHHHHHHcCCCcEEEEecCCCCCHHHHHH
Confidence            5999999999999999988775 4676544 53  5555443

>3cps_A Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, glycolysis, malaria, structural genomics; HET: NAD; 1.90A {Cryptosporidium parvum iowa II} PDB: 1vsv_A* 1vsu_A* 3chz_A 3cie_A* 3cif_A* 3sth_A*

Probab=94.71  E-value=0.084  Score=49.99  Aligned_cols=33  Identities=12%  Similarity=0.221  Sum_probs=25.4

Q ss_pred             CCccEEEEECCCcchHHHHHHHHHC-CCeeEEec
Q psy9056         218 TPVKTVAVLGAGLMGAGIAHVTVDK-GYNTIVKD  250 (359)
Q Consensus       218 ~~~~kI~IIG~G~mG~~iA~~l~~~-G~~V~l~d  250 (359)
                      +.+.||+|+|+|++|.-+.+.+.++ .++|+.++
T Consensus        15 ~~~ikVgI~G~G~iGr~llR~l~~~p~veivain   48 (354)
T 3cps_A           15 YFQGTLGINGFGRIGRLVLRACMERNDITVVAIN   48 (354)
T ss_dssp             ---CEEEEECCSHHHHHHHHHHHTCSSCEEEEEE
T ss_pred             CcceEEEEECCCHHHHHHHHHHHcCCCeEEEEec
Confidence            4456999999999999999999877 56766554

>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}

Probab=94.71  E-value=0.29  Score=43.20  Aligned_cols=42  Identities=24%  Similarity=0.235  Sum_probs=36.5

Q ss_pred             cEEEEECC-CcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHH
Q psy9056         221 KTVAVLGA-GLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQ  262 (359)
Q Consensus       221 ~kI~IIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~  262 (359)
                      ++|-|.|+ |.+|..+|..|++.|++|++.+++++.++...+.
T Consensus        10 k~vlITGas~giG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~   52 (253)
T 3qiv_A           10 KVGIVTGSGGGIGQAYAEALAREGAAVVVADINAEAAEAVAKQ   52 (253)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHH
Confidence            57888886 9999999999999999999999999887765543

>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*

Probab=94.70  E-value=0.023  Score=47.70  Aligned_cols=34  Identities=26%  Similarity=0.309  Sum_probs=31.3

Q ss_pred             ccEEEEECCCcchHHHHHHHHHCCCeeEEecCCH
Q psy9056         220 VKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFE  253 (359)
Q Consensus       220 ~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~  253 (359)
                      |.+|.|||+|..|..+|..+++.|.+|+++++++
T Consensus         1 ~~~vvIIGgG~~Gl~~A~~l~~~g~~v~lie~~~   34 (180)
T 2ywl_A            1 MWDVIVVGGGPSGLSAALFLARAGLKVLVLDGGR   34 (180)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEEECSC
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            3589999999999999999999999999999765

>3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str}

Probab=94.66  E-value=0.22  Score=44.33  Aligned_cols=43  Identities=21%  Similarity=0.280  Sum_probs=36.1

Q ss_pred             CccEEEEECC-CcchHHHHHHHHHCCCeeEEecCCHHHHHHHHH
Q psy9056         219 PVKTVAVLGA-GLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLG  261 (359)
Q Consensus       219 ~~~kI~IIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~  261 (359)
                      .-+++-|.|+ |-+|..+|..|++.|++|++.+++++.++....
T Consensus         5 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~   48 (257)
T 3imf_A            5 KEKVVIITGGSSGMGKGMATRFAKEGARVVITGRTKEKLEEAKL   48 (257)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence            3356778886 899999999999999999999999988766543

>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A

Probab=94.65  E-value=0.24  Score=43.94  Aligned_cols=44  Identities=23%  Similarity=0.205  Sum_probs=37.0

Q ss_pred             ccEEEEECC-CcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHH
Q psy9056         220 VKTVAVLGA-GLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQI  263 (359)
Q Consensus       220 ~~kI~IIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~  263 (359)
                      -++|-|.|+ |-+|..+|..|++.|++|++.+++++.++.....+
T Consensus        12 ~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~   56 (252)
T 3f1l_A           12 DRIILVTGASDGIGREAAMTYARYGATVILLGRNEEKLRQVASHI   56 (252)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence            357778886 88999999999999999999999998877655433

>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus}

Probab=94.64  E-value=0.2  Score=45.71  Aligned_cols=34  Identities=21%  Similarity=0.330  Sum_probs=31.4

Q ss_pred             cEEEEECC-CcchHHHHHHHHHCCCeeEEecCCHH
Q psy9056         221 KTVAVLGA-GLMGAGIAHVTVDKGYNTIVKDSFEK  254 (359)
Q Consensus       221 ~kI~IIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~  254 (359)
                      ++|.|.|+ |.+|+.++..|.+.|++|+++++++.
T Consensus         3 ~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~   37 (311)
T 3m2p_A            3 LKIAVTGGTGFLGQYVVESIKNDGNTPIILTRSIG   37 (311)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCC
T ss_pred             CEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCCCC
Confidence            68999995 99999999999999999999999844

>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber}

Probab=94.62  E-value=0.3  Score=44.12  Aligned_cols=41  Identities=17%  Similarity=0.200  Sum_probs=35.2

Q ss_pred             cEEEEECC-CcchHHHHHHHHHCCCeeEEecCCHHHHHHHHH
Q psy9056         221 KTVAVLGA-GLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLG  261 (359)
Q Consensus       221 ~kI~IIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~  261 (359)
                      +++-|.|+ |-+|..+|..|++.|++|++.+++++.++...+
T Consensus        25 k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~   66 (279)
T 3sju_A           25 QTAFVTGVSSGIGLAVARTLAARGIAVYGCARDAKNVSAAVD   66 (279)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence            45777786 899999999999999999999999988776544

>2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A {Pseudomonas aeruginosa}

Probab=94.60  E-value=0.053  Score=49.17  Aligned_cols=45  Identities=20%  Similarity=0.313  Sum_probs=37.0

Q ss_pred             CCccEEEEECC-CcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHH
Q psy9056         218 TPVKTVAVLGA-GLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQI  263 (359)
Q Consensus       218 ~~~~kI~IIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~  263 (359)
                      +. ++|-|.|+ |.+|..++..|++.|++|++.+++++.++.....+
T Consensus        20 ~~-k~vlVTGas~gIG~aia~~La~~G~~V~~~~r~~~~~~~~~~~~   65 (272)
T 2nwq_A           20 MS-STLFITGATSGFGEACARRFAEAGWSLVLTGRREERLQALAGEL   65 (272)
T ss_dssp             -C-CEEEESSTTTSSHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred             cC-cEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh
Confidence            44 67778886 89999999999999999999999998877654433

>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*

Probab=94.57  E-value=0.03  Score=56.31  Aligned_cols=105  Identities=17%  Similarity=0.153  Sum_probs=0.0

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcCCCCCc
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPFKNA  300 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~a  300 (359)
                      ++|.|+|.|.+|..+|..|.+.|++|+++|.|+++.+...         ..-.|..++...-...+          ++++
T Consensus       349 ~~viIiG~G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~---------~~i~gD~t~~~~L~~ag----------i~~a  409 (565)
T 4gx0_A          349 ELIFIIGHGRIGCAAAAFLDRKPVPFILIDRQESPVCNDH---------VVVYGDATVGQTLRQAG----------IDRA  409 (565)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSCCSSCCSS---------CEEESCSSSSTHHHHHT----------TTSC
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEEEECChHHHhhcC---------CEEEeCCCCHHHHHhcC----------cccc


Q ss_pred             cEEEEcccCCHHHHHHHHHHHHHhCCCC-cEEEEcCCCCcHHHHHhh
Q psy9056         301 DMVIEAVFEDINIKHQVIKEIEAVVPPH-CVVATNTSAIPITKIAAA  346 (359)
Q Consensus       301 D~Vi~avp~~~~~k~~v~~~l~~~~~~~-~ii~s~ts~~~~~~l~~~  346 (359)
                      |.+|.+++++.  ..-+...+.+.++++ .+|+-..+.-....+...
T Consensus       410 d~vi~~~~~d~--~ni~~~~~ak~l~~~~~iiar~~~~~~~~~l~~~  454 (565)
T 4gx0_A          410 SGIIVTTNDDS--TNIFLTLACRHLHSHIRIVARANGEENVDQLYAA  454 (565)
T ss_dssp             SEEEECCSCHH--HHHHHHHHHHHHCSSSEEEEEESSTTSHHHHHHH
T ss_pred             CEEEEECCCch--HHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHc

>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*

Probab=94.51  E-value=0.031  Score=52.59  Aligned_cols=36  Identities=25%  Similarity=0.317  Sum_probs=32.3

Q ss_pred             CCccEEEEECCCcchHHHHHHHHHCCCeeEEecCCH
Q psy9056         218 TPVKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFE  253 (359)
Q Consensus       218 ~~~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~  253 (359)
                      .....|.|||+|..|.+.|..|++.|++|+++|.+.
T Consensus        15 ~~~~dvvIIGgG~~Gl~~A~~La~~G~~V~llE~~~   50 (382)
T 1ryi_A           15 KRHYEAVVIGGGIIGSAIAYYLAKENKNTALFESGT   50 (382)
T ss_dssp             CSEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHhCCCcEEEEeCCC
Confidence            344689999999999999999999999999999863

>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2

Probab=94.51  E-value=0.25  Score=44.35  Aligned_cols=44  Identities=18%  Similarity=0.195  Sum_probs=36.6

Q ss_pred             CCccEEEEECC-CcchHHHHHHHHHCCCeeEEecCCHHHHHHHHH
Q psy9056         218 TPVKTVAVLGA-GLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLG  261 (359)
Q Consensus       218 ~~~~kI~IIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~  261 (359)
                      ..-++|-|.|+ |.+|..++..|++.|++|++.+++++.++....
T Consensus        19 l~~k~~lVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~   63 (267)
T 1vl8_A           19 LRGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQ   63 (267)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence            33467888886 999999999999999999999999887665443

>2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2

Probab=94.47  E-value=0.29  Score=43.72  Aligned_cols=39  Identities=23%  Similarity=0.150  Sum_probs=34.2

Q ss_pred             cEEEEECC-CcchHHHHHHHHHCCCeeEEecCCHHHHHHH
Q psy9056         221 KTVAVLGA-GLMGAGIAHVTVDKGYNTIVKDSFEKGLARG  259 (359)
Q Consensus       221 ~kI~IIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~  259 (359)
                      ++|-|.|+ |.+|..++..|++.|++|++.+++++.++..
T Consensus         8 k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~   47 (267)
T 2gdz_A            8 KVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQC   47 (267)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred             CEEEEECCCCcHHHHHHHHHHHCCCEEEEEECCHHHHHHH
Confidence            57888886 9999999999999999999999998776543

>3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A*

Probab=94.45  E-value=0.22  Score=44.69  Aligned_cols=37  Identities=27%  Similarity=0.181  Sum_probs=31.0

Q ss_pred             EEEEEC-CCcchHHHHHHHHHCCCeeEEecCCHHHHHH
Q psy9056         222 TVAVLG-AGLMGAGIAHVTVDKGYNTIVKDSFEKGLAR  258 (359)
Q Consensus       222 kI~IIG-~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~  258 (359)
                      +|-|-| ++-+|.++|..|++.|.+|++.|++++.+++
T Consensus         4 ~vlVTGas~GIG~aia~~la~~Ga~V~~~~~~~~~~~~   41 (247)
T 3ged_A            4 GVIVTGGGHGIGKQICLDFLEAGDKVCFIDIDEKRSAD   41 (247)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHH
T ss_pred             EEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence            444556 4889999999999999999999999877554

>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0

Probab=94.43  E-value=0.062  Score=47.57  Aligned_cols=45  Identities=27%  Similarity=0.230  Sum_probs=38.5

Q ss_pred             CCccEEEEECC-CcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHH
Q psy9056         218 TPVKTVAVLGA-GLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQ  262 (359)
Q Consensus       218 ~~~~kI~IIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~  262 (359)
                      .+-++|-|.|+ |.+|..++..|++.|++|++.+++.+.++.....
T Consensus        12 ~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~   57 (249)
T 3f9i_A           12 LTGKTSLITGASSGIGSAIARLLHKLGSKVIISGSNEEKLKSLGNA   57 (249)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHH
Confidence            44578889986 8999999999999999999999999887765543

>2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum pernix}

Probab=94.43  E-value=0.074  Score=47.52  Aligned_cols=43  Identities=16%  Similarity=0.125  Sum_probs=36.9

Q ss_pred             cEEEEECC-CcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHH
Q psy9056         221 KTVAVLGA-GLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQI  263 (359)
Q Consensus       221 ~kI~IIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~  263 (359)
                      ++|-|.|+ |.+|..++..|++.|++|++.+++++.++...+.+
T Consensus         8 k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~   51 (260)
T 2z1n_A            8 KLAVVTAGSSGLGFASALELARNGARLLLFSRNREKLEAAASRI   51 (260)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred             CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence            57888886 99999999999999999999999998877655444

>3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri}

Probab=94.42  E-value=0.067  Score=49.11  Aligned_cols=34  Identities=12%  Similarity=0.237  Sum_probs=31.7

Q ss_pred             ccEEEEECC-CcchHHHHHHHHHCCCeeEEecCCH
Q psy9056         220 VKTVAVLGA-GLMGAGIAHVTVDKGYNTIVKDSFE  253 (359)
Q Consensus       220 ~~kI~IIG~-G~mG~~iA~~l~~~G~~V~l~d~~~  253 (359)
                      +++|.|.|+ |.+|..++..|++.|++|++++|++
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~   38 (321)
T 3c1o_A            4 MEKIIIYGGTGYIGKFMVRASLSFSHPTFIYARPL   38 (321)
T ss_dssp             CCCEEEETTTSTTHHHHHHHHHHTTCCEEEEECCC
T ss_pred             ccEEEEEcCCchhHHHHHHHHHhCCCcEEEEECCc
Confidence            578999996 9999999999999999999999986

>3ip3_A Oxidoreductase, putative; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.14A {Thermotoga maritima}

Probab=94.42  E-value=0.028  Score=52.63  Aligned_cols=73  Identities=10%  Similarity=0.067  Sum_probs=45.4

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCCeeE-EecCCH-HHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcCC-C
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGYNTI-VKDSFE-KGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDP-F  297 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~~V~-l~d~~~-~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-l  297 (359)
                      .||+|||+|.+|...+..+ ..+.+|+ ++|+++ ++.+...+..+       +.+ +          .....+|+++ +
T Consensus         3 ~rvgiiG~G~~~~~~~~~l-~~~~~lvav~d~~~~~~~~~~~~~~~-------~~~-~----------~~~~~~~~~~ll   63 (337)
T 3ip3_A            3 LKICVIGSSGHFRYALEGL-DEECSITGIAPGVPEEDLSKLEKAIS-------EMN-I----------KPKKYNNWWEML   63 (337)
T ss_dssp             EEEEEECSSSCHHHHHTTC-CTTEEEEEEECSSTTCCCHHHHHHHH-------TTT-C----------CCEECSSHHHHH
T ss_pred             eEEEEEccchhHHHHHHhc-CCCcEEEEEecCCchhhHHHHHHHHH-------HcC-C----------CCcccCCHHHHh
Confidence            5999999999998777666 5567765 679887 34443322111       001 0          0123456543 3


Q ss_pred             --CCccEEEEcccCCHH
Q psy9056         298 --KNADMVIEAVFEDIN  312 (359)
Q Consensus       298 --~~aD~Vi~avp~~~~  312 (359)
                        .+.|+|++|+|....
T Consensus        64 ~~~~vD~V~I~tp~~~H   80 (337)
T 3ip3_A           64 EKEKPDILVINTVFSLN   80 (337)
T ss_dssp             HHHCCSEEEECSSHHHH
T ss_pred             cCCCCCEEEEeCCcchH
Confidence              458999999997654

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}

Probab=94.41  E-value=0.33  Score=46.49  Aligned_cols=40  Identities=20%  Similarity=0.302  Sum_probs=35.7

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCC-eeEEecCCHHHHHHHH
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGY-NTIVKDSFEKGLARGL  260 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~-~V~l~d~~~~~l~~~~  260 (359)
                      .+|.|+|+|.+|...+..+...|. +|+..|.++++++.+.
T Consensus       215 ~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~  255 (404)
T 3ip1_A          215 DNVVILGGGPIGLAAVAILKHAGASKVILSEPSEVRRNLAK  255 (404)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHH
Confidence            689999999999999999888999 8999999999877653

>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A*

Probab=94.41  E-value=0.033  Score=52.22  Aligned_cols=32  Identities=34%  Similarity=0.531  Sum_probs=30.1

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCCeeEEecCC
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSF  252 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~  252 (359)
                      ..|.|||+|.+|.++|..|++.|++|+++|.+
T Consensus         7 ~dVvVIG~Gi~Gls~A~~La~~G~~V~vle~~   38 (363)
T 1c0p_A            7 KRVVVLGSGVIGLSSALILARKGYSVHILARD   38 (363)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCEEEEEecc
Confidence            47999999999999999999999999999964

>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A*

Probab=94.39  E-value=0.14  Score=44.81  Aligned_cols=44  Identities=20%  Similarity=0.283  Sum_probs=37.7

Q ss_pred             ccEEEEECC-CcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHH
Q psy9056         220 VKTVAVLGA-GLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQI  263 (359)
Q Consensus       220 ~~kI~IIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~  263 (359)
                      +++|-|.|+ |.+|..++..|++.|++|++.+++.++++.....+
T Consensus         2 ~k~vlITGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~   46 (235)
T 3l77_A            2 MKVAVITGASRGIGEAIARALARDGYALALGARSVDRLEKIAHEL   46 (235)
T ss_dssp             CCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence            467888886 88999999999999999999999998877665443

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=94.38  E-value=0.027  Score=51.82  Aligned_cols=35  Identities=14%  Similarity=0.200  Sum_probs=31.6

Q ss_pred             CCccEEEEECCCcchHHHHHHHHHCCCeeEEecCC
Q psy9056         218 TPVKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSF  252 (359)
Q Consensus       218 ~~~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~  252 (359)
                      ....+|.|||+|.-|.+.|..+++.|++|+++|.+
T Consensus        20 ~~~~~vvIIG~G~aGl~aA~~l~~~g~~v~vie~~   54 (338)
T 3itj_A           20 HVHNKVTIIGSGPAAHTAAIYLARAEIKPILYEGM   54 (338)
T ss_dssp             -CEEEEEEECCSHHHHHHHHHHHHTTCCCEEECCS
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHCCCCEEEEecC
Confidence            34578999999999999999999999999999984

>3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0

Probab=94.35  E-value=0.067  Score=49.46  Aligned_cols=40  Identities=23%  Similarity=0.475  Sum_probs=34.1

Q ss_pred             cEEEEECC-CcchHHHHHHHHHCCCeeEEecCCHHHHHHHH
Q psy9056         221 KTVAVLGA-GLMGAGIAHVTVDKGYNTIVKDSFEKGLARGL  260 (359)
Q Consensus       221 ~kI~IIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~  260 (359)
                      ++|.|.|+ |.+|..++..|++.|++|++.+++.+..+...
T Consensus         6 ~~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~   46 (341)
T 3enk_A            6 GTILVTGGAGYIGSHTAVELLAHGYDVVIADNLVNSKREAI   46 (341)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEECCCSSSCTHHH
T ss_pred             cEEEEecCCcHHHHHHHHHHHHCCCcEEEEecCCcchHHHH
Confidence            58999995 99999999999999999999999876544433

>3ing_A Homoserine dehydrogenase; NP_394635.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: NDP; 1.95A {Thermoplasma acidophilum}

Probab=94.34  E-value=0.017  Score=54.19  Aligned_cols=37  Identities=16%  Similarity=0.261  Sum_probs=26.8

Q ss_pred             CCccEEEEECCCcchHHHHHHHHHC-----CC--ee-EEecCCHH
Q psy9056         218 TPVKTVAVLGAGLMGAGIAHVTVDK-----GY--NT-IVKDSFEK  254 (359)
Q Consensus       218 ~~~~kI~IIG~G~mG~~iA~~l~~~-----G~--~V-~l~d~~~~  254 (359)
                      |+.-+|+|||+|.||+.++..+.++     |.  +| -+.|+++.
T Consensus         2 Mk~irVgIiG~G~VG~~~~~~L~~~~~~~~g~~l~lvaVad~~~~   46 (325)
T 3ing_A            2 MKEIRIILMGTGNVGLNVLRIIDASNRRRSAFSIKVVGVSDSRSY   46 (325)
T ss_dssp             -CEEEEEEECCSHHHHHHHHHHHHHHHHC--CEEEEEEEECSSBE
T ss_pred             CceEEEEEEcCcHHHHHHHHHHHhchhhccCCCEEEEEEEecChh
Confidence            4556899999999999999998874     33  43 44476653

>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti}

Probab=94.28  E-value=0.34  Score=43.53  Aligned_cols=43  Identities=23%  Similarity=0.287  Sum_probs=36.1

Q ss_pred             cEEEEECC-CcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHH
Q psy9056         221 KTVAVLGA-GLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQI  263 (359)
Q Consensus       221 ~kI~IIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~  263 (359)
                      ++|-|.|+ |-+|..+|..|++.|++|++.+++++.++.....+
T Consensus         5 k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l   48 (264)
T 3tfo_A            5 KVILITGASGGIGEGIARELGVAGAKILLGARRQARIEAIATEI   48 (264)
T ss_dssp             CEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHH
T ss_pred             CEEEEeCCccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH
Confidence            46777786 88999999999999999999999998877655433

>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*

Probab=94.28  E-value=0.03  Score=53.50  Aligned_cols=34  Identities=24%  Similarity=0.335  Sum_probs=31.8

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCCeeEEecCCHH
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEK  254 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~  254 (359)
                      .+|.|||+|..|.+.|..|+++|++|+++|+++.
T Consensus        24 ~dV~IVGaG~aGl~~A~~La~~G~~V~v~E~~~~   57 (407)
T 3rp8_A           24 MKAIVIGAGIGGLSAAVALKQSGIDCDVYEAVKE   57 (407)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCC
Confidence            4899999999999999999999999999998764

>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2

Probab=94.27  E-value=0.49  Score=41.55  Aligned_cols=41  Identities=22%  Similarity=0.219  Sum_probs=35.7

Q ss_pred             cEEEEECC-CcchHHHHHHHHHCCCeeEEecCCHHHHHHHHH
Q psy9056         221 KTVAVLGA-GLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLG  261 (359)
Q Consensus       221 ~kI~IIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~  261 (359)
                      ++|-|.|+ |.+|..++..|++.|++|++.+++++.++....
T Consensus         6 k~vlITGas~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~   47 (247)
T 3lyl_A            6 KVALVTGASRGIGFEVAHALASKGATVVGTATSQASAEKFEN   47 (247)
T ss_dssp             CEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence            57788886 899999999999999999999999988776544

>1ys4_A Aspartate-semialdehyde dehydrogenase; oxidoreductase, asadh; HET: NAP; 2.29A {Methanocaldococcus jannaschii}

Probab=94.26  E-value=0.033  Score=52.84  Aligned_cols=103  Identities=17%  Similarity=0.172  Sum_probs=54.5

Q ss_pred             cEEEEEC-CCcchHHHHHHHHHCC-CeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccc-cCcCCC
Q psy9056         221 KTVAVLG-AGLMGAGIAHVTVDKG-YNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGT-LSYDPF  297 (359)
Q Consensus       221 ~kI~IIG-~G~mG~~iA~~l~~~G-~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~l  297 (359)
                      .||+|+| .|++|..+...|.++. ++|+.+..++....+...   ....... ...+....     ..+.+. .+.+.+
T Consensus         9 ~kV~IiGAtG~iG~~llr~L~~~p~~ev~~i~~s~~~~g~~~~---~~~~~~~-~~~~~~~~-----~~~~~~~~~~~~~   79 (354)
T 1ys4_A            9 IKVGVLGATGSVGQRFVQLLADHPMFELTALAASERSAGKKYK---DACYWFQ-DRDIPENI-----KDMVVIPTDPKHE   79 (354)
T ss_dssp             EEEEEETTTSHHHHHHHHHHTTCSSEEEEEEEECTTTTTSBHH---HHSCCCC-SSCCCHHH-----HTCBCEESCTTSG
T ss_pred             ceEEEECcCCHHHHHHHHHHhcCCCCEEEEEEcccccccccHH---Hhccccc-ccccccCc-----eeeEEEeCCHHHH
Confidence            5899999 7999999999998764 577666433211100000   0000000 00000000     012221 133344


Q ss_pred             -C-CccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCC
Q psy9056         298 -K-NADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSA  337 (359)
Q Consensus       298 -~-~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~  337 (359)
                       + ++|+||+|+|...  ..++...+.+   .++.|+++++.
T Consensus        80 ~~~~~DvV~~atp~~~--~~~~a~~~~~---aG~~VId~s~~  116 (354)
T 1ys4_A           80 EFEDVDIVFSALPSDL--AKKFEPEFAK---EGKLIFSNASA  116 (354)
T ss_dssp             GGTTCCEEEECCCHHH--HHHHHHHHHH---TTCEEEECCST
T ss_pred             hcCCCCEEEECCCchH--HHHHHHHHHH---CCCEEEECCch
Confidence             5 8999999998654  3344454443   46667787764

>3asu_A Short-chain dehydrogenase/reductase SDR; SDR family, rossmann-fold, short-chain dehydrogenase/reducta ALLO-threonine dehydrogenase; 1.90A {Escherichia coli} PDB: 3asv_A*

Probab=94.23  E-value=0.084  Score=46.98  Aligned_cols=41  Identities=22%  Similarity=0.212  Sum_probs=34.6

Q ss_pred             cEEEEECC-CcchHHHHHHHHHCCCeeEEecCCHHHHHHHHH
Q psy9056         221 KTVAVLGA-GLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLG  261 (359)
Q Consensus       221 ~kI~IIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~  261 (359)
                      +++-|.|+ |.+|..++..|++.|++|++.+++++.++....
T Consensus         1 k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~   42 (248)
T 3asu_A            1 MIVLVTGATAGFGECITRRFIQQGHKVIATGRRQERLQELKD   42 (248)
T ss_dssp             CEEEETTTTSTTHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence            35667775 899999999999999999999999987766544

>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*

Probab=94.21  E-value=0.29  Score=43.81  Aligned_cols=43  Identities=12%  Similarity=0.129  Sum_probs=36.6

Q ss_pred             cEEEEECC-CcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHH
Q psy9056         221 KTVAVLGA-GLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQI  263 (359)
Q Consensus       221 ~kI~IIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~  263 (359)
                      +++-|.|+ |-+|..+|..|++.|++|++.+++++.++.....+
T Consensus         9 k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l   52 (265)
T 3lf2_A            9 AVAVVTGGSSGIGLATVELLLEAGAAVAFCARDGERLRAAESAL   52 (265)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred             CEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence            56778885 88999999999999999999999998877655443

>3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus}

Probab=94.21  E-value=0.055  Score=47.37  Aligned_cols=42  Identities=21%  Similarity=0.267  Sum_probs=35.5

Q ss_pred             ccEEEEECC-CcchHHHHHHHHHCCCeeEEecCCHHHHHHHHH
Q psy9056         220 VKTVAVLGA-GLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLG  261 (359)
Q Consensus       220 ~~kI~IIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~  261 (359)
                      |++|-|.|+ |.+|..++..|++.|++|++.+++++.++....
T Consensus         1 Mk~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~   43 (230)
T 3guy_A            1 MSLIVITGASSGLGAELAKLYDAEGKATYLTGRSESKLSTVTN   43 (230)
T ss_dssp             --CEEEESTTSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHH
T ss_pred             CCEEEEecCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence            567888886 899999999999999999999999988776543

>2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A*

Probab=94.21  E-value=0.49  Score=41.75  Aligned_cols=41  Identities=17%  Similarity=0.127  Sum_probs=35.4

Q ss_pred             cEEEEECC-CcchHHHHHHHHHCCCeeEEecCCHHHHHHHHH
Q psy9056         221 KTVAVLGA-GLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLG  261 (359)
Q Consensus       221 ~kI~IIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~  261 (359)
                      +++-|.|+ |.+|..++..|++.|++|++.+++++.++...+
T Consensus         8 k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~   49 (247)
T 2jah_A            8 KVALITGASSGIGEATARALAAEGAAVAIAARRVEKLRALGD   49 (247)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence            57888886 899999999999999999999999887665443

>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A*

Probab=94.20  E-value=0.72  Score=41.46  Aligned_cols=41  Identities=29%  Similarity=0.291  Sum_probs=35.2

Q ss_pred             cEEEEECC-CcchHHHHHHHHHCCCeeEEecCCHHHHHHHHH
Q psy9056         221 KTVAVLGA-GLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLG  261 (359)
Q Consensus       221 ~kI~IIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~  261 (359)
                      ++|-|.|+ |.+|..++..|++.|++|++.+++++.++...+
T Consensus        23 k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~   64 (277)
T 2rhc_B           23 EVALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLK   64 (277)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence            57888886 999999999999999999999999887665443

>1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2

Probab=94.20  E-value=0.35  Score=43.21  Aligned_cols=42  Identities=19%  Similarity=0.216  Sum_probs=35.9

Q ss_pred             ccEEEEECC-CcchHHHHHHHHHCCCeeEEecCCHHHHHHHHH
Q psy9056         220 VKTVAVLGA-GLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLG  261 (359)
Q Consensus       220 ~~kI~IIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~  261 (359)
                      -++|-|.|+ |.+|..++..|++.|++|++.+++++.++....
T Consensus        13 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~   55 (267)
T 1iy8_A           13 DRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKA   55 (267)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence            367888885 999999999999999999999999987665443

>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2

Probab=94.19  E-value=0.49  Score=42.47  Aligned_cols=42  Identities=21%  Similarity=0.245  Sum_probs=36.0

Q ss_pred             ccEEEEECC-CcchHHHHHHHHHCCCeeEEecCCHHHHHHHHH
Q psy9056         220 VKTVAVLGA-GLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLG  261 (359)
Q Consensus       220 ~~kI~IIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~  261 (359)
                      -++|.|.|+ |.+|..++..|++.|++|++.+++++.++....
T Consensus        32 ~k~vlVTGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~   74 (279)
T 1xg5_A           32 DRLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELAA   74 (279)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCCEEEEEECChHHHHHHHH
Confidence            367888886 999999999999999999999999887665443

>1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2

Probab=94.19  E-value=0.59  Score=41.39  Aligned_cols=41  Identities=24%  Similarity=0.250  Sum_probs=34.7

Q ss_pred             cEEEEECC-CcchHHHHHHHHHCCCeeEEecCCHHHHHHHHH
Q psy9056         221 KTVAVLGA-GLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLG  261 (359)
Q Consensus       221 ~kI~IIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~  261 (359)
                      ++|-|.|+ |.+|..++..|++.|++|++.+++++.++...+
T Consensus         3 k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~   44 (256)
T 1geg_A            3 KVALVTGAGQGIGKAIALRLVKDGFAVAIADYNDATAKAVAS   44 (256)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence            46777885 899999999999999999999999887665443

>2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET: NAD KPC; 1.8A {Xanthobacter autotrophicus}

Probab=94.19  E-value=0.35  Score=42.40  Aligned_cols=40  Identities=23%  Similarity=0.187  Sum_probs=34.6

Q ss_pred             cEEEEECC-CcchHHHHHHHHHCCCeeEEecCCHHHHHHHH
Q psy9056         221 KTVAVLGA-GLMGAGIAHVTVDKGYNTIVKDSFEKGLARGL  260 (359)
Q Consensus       221 ~kI~IIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~  260 (359)
                      ++|-|.|+ |.+|..++..|++.|++|++.+++++.++...
T Consensus         3 k~vlItGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~   43 (250)
T 2cfc_A            3 RVAIVTGASSGNGLAIATRFLARGDRVAALDLSAETLEETA   43 (250)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred             CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence            56888886 99999999999999999999999988766543

>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum}

Probab=94.18  E-value=0.34  Score=43.78  Aligned_cols=41  Identities=20%  Similarity=0.199  Sum_probs=35.4

Q ss_pred             cEEEEECC-CcchHHHHHHHHHCCCeeEEecCCHHHHHHHHH
Q psy9056         221 KTVAVLGA-GLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLG  261 (359)
Q Consensus       221 ~kI~IIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~  261 (359)
                      ++|-|.|+ |-+|..++..|++.|++|++.+++++.++...+
T Consensus        33 k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~   74 (276)
T 3r1i_A           33 KRALITGASTGIGKKVALAYAEAGAQVAVAARHSDALQVVAD   74 (276)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence            57778886 899999999999999999999999887666544

>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2

Probab=94.17  E-value=0.037  Score=52.74  Aligned_cols=34  Identities=24%  Similarity=0.319  Sum_probs=31.8

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCCeeEEecCCHH
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEK  254 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~  254 (359)
                      .+|.|||+|..|.++|..|++.|++|+++|+++.
T Consensus         6 ~~V~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~   39 (397)
T 2vou_A            6 DRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQ   39 (397)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence            5899999999999999999999999999998754

>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0

Probab=94.16  E-value=0.32  Score=44.06  Aligned_cols=42  Identities=12%  Similarity=0.088  Sum_probs=36.0

Q ss_pred             cEEEEECC-CcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHH
Q psy9056         221 KTVAVLGA-GLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQ  262 (359)
Q Consensus       221 ~kI~IIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~  262 (359)
                      ++|-|.|+ |.+|..+|..|++.|++|++.+++.+++++....
T Consensus        13 k~vlITGas~GIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~   55 (311)
T 3o26_A           13 RCAVVTGGNKGIGFEICKQLSSNGIMVVLTCRDVTKGHEAVEK   55 (311)
T ss_dssp             CEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH
T ss_pred             cEEEEecCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH
Confidence            56777786 8999999999999999999999999887765543

>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}

Probab=94.16  E-value=0.45  Score=43.51  Aligned_cols=42  Identities=17%  Similarity=0.267  Sum_probs=36.7

Q ss_pred             cEEEEECC-CcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHH
Q psy9056         221 KTVAVLGA-GLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQ  262 (359)
Q Consensus       221 ~kI~IIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~  262 (359)
                      ++|-|.|+ |.+|..++..|++.|++|++.+++++.++...+.
T Consensus        32 k~vlVTGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~   74 (301)
T 3tjr_A           32 RAAVVTGGASGIGLATATEFARRGARLVLSDVDQPALEQAVNG   74 (301)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH
Confidence            57888886 8899999999999999999999999887765543

>2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D

Probab=94.13  E-value=0.022  Score=51.44  Aligned_cols=37  Identities=22%  Similarity=0.214  Sum_probs=32.5

Q ss_pred             cEEEEECC-CcchHHHHHHHHHC--CCeeEEecCCHHHHH
Q psy9056         221 KTVAVLGA-GLMGAGIAHVTVDK--GYNTIVKDSFEKGLA  257 (359)
Q Consensus       221 ~kI~IIG~-G~mG~~iA~~l~~~--G~~V~l~d~~~~~l~  257 (359)
                      ++|.|.|+ |.+|+.++..|++.  |++|++++++++..+
T Consensus         1 ~~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~   40 (287)
T 2jl1_A            1 FSIAVTGATGQLGGLVIQHLLKKVPASQIIAIVRNVEKAS   40 (287)
T ss_dssp             CCEEETTTTSHHHHHHHHHHTTTSCGGGEEEEESCTTTTH
T ss_pred             CeEEEEcCCchHHHHHHHHHHHhCCCCeEEEEEcCHHHHh
Confidence            46899997 99999999999998  999999999876543

>4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A*

Probab=94.13  E-value=0.034  Score=52.42  Aligned_cols=36  Identities=22%  Similarity=0.387  Sum_probs=33.6

Q ss_pred             ccEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHH
Q psy9056         220 VKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKG  255 (359)
Q Consensus       220 ~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~  255 (359)
                      ||+|+|+|.|..|..++..+.+.|++|+++|.+++.
T Consensus         1 MK~I~ilGgg~~g~~~~~~Ak~~G~~vv~vd~~~~~   36 (363)
T 4ffl_A            1 MKTICLVGGKLQGFEAAYLSKKAGMKVVLVDKNPQA   36 (363)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCTTC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCC
Confidence            799999999999999999999999999999988763

>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus}

Probab=94.12  E-value=0.035  Score=53.31  Aligned_cols=33  Identities=27%  Similarity=0.296  Sum_probs=30.8

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCCeeEEecCCH
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFE  253 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~  253 (359)
                      ++|.|||+|..|.+.|..|+++|++|+++|.++
T Consensus         1 ~dVvVIGaGiaGLsaA~~La~~G~~V~vlE~~~   33 (421)
T 3nrn_A            1 MRAVVVGAGLGGLLAGAFLARNGHEIIVLEKSA   33 (421)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            479999999999999999999999999999864

>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A*

Probab=94.12  E-value=0.036  Score=52.46  Aligned_cols=37  Identities=16%  Similarity=0.316  Sum_probs=32.1

Q ss_pred             CCccEEEEECCCcchHHHHHHHHHCCCeeEEecCCHH
Q psy9056         218 TPVKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEK  254 (359)
Q Consensus       218 ~~~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~  254 (359)
                      |...+|.|||+|..|...|..|++.|++|+++|+++.
T Consensus         9 m~~~dVvIVGaG~aGl~~A~~L~~~G~~v~viE~~~~   45 (379)
T 3alj_A            9 GKTRRAEVAGGGFAGLTAAIALKQNGWDVRLHEKSSE   45 (379)
T ss_dssp             --CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC
Confidence            3345899999999999999999999999999998753

>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444}

Probab=94.12  E-value=0.49  Score=43.70  Aligned_cols=44  Identities=18%  Similarity=0.374  Sum_probs=37.9

Q ss_pred             ccEEEEECC-CcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHH
Q psy9056         220 VKTVAVLGA-GLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQI  263 (359)
Q Consensus       220 ~~kI~IIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~  263 (359)
                      -++|-|.|+ |.+|..++..|++.|++|++.++++++++.....+
T Consensus         8 ~k~vlVTGas~gIG~~la~~l~~~G~~Vv~~~r~~~~~~~~~~~l   52 (319)
T 3ioy_A            8 GRTAFVTGGANGVGIGLVRQLLNQGCKVAIADIRQDSIDKALATL   52 (319)
T ss_dssp             TCEEEEETTTSTHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred             CCEEEEcCCchHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH
Confidence            357888886 99999999999999999999999999877765543

>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans}

Probab=94.11  E-value=0.62  Score=41.06  Aligned_cols=40  Identities=18%  Similarity=0.244  Sum_probs=35.1

Q ss_pred             cEEEEECC-CcchHHHHHHHHHCCCeeEEecCCHHHHHHHH
Q psy9056         221 KTVAVLGA-GLMGAGIAHVTVDKGYNTIVKDSFEKGLARGL  260 (359)
Q Consensus       221 ~kI~IIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~  260 (359)
                      ++|.|.|+ |.+|..++..|++.|++|++.+++++.++...
T Consensus        14 k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~   54 (260)
T 3awd_A           14 RVAIVTGGAQNIGLACVTALAEAGARVIIADLDEAMATKAV   54 (260)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred             CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence            67888886 99999999999999999999999988766543

>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A

Probab=94.10  E-value=0.34  Score=43.10  Aligned_cols=40  Identities=18%  Similarity=0.208  Sum_probs=35.1

Q ss_pred             cEEEEECC-CcchHHHHHHHHHCCCeeEEecCCHHHHHHHH
Q psy9056         221 KTVAVLGA-GLMGAGIAHVTVDKGYNTIVKDSFEKGLARGL  260 (359)
Q Consensus       221 ~kI~IIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~  260 (359)
                      ++|-|.|+ |.+|..++..|++.|++|++.+++.+.++...
T Consensus         9 k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~   49 (259)
T 4e6p_A            9 KSALITGSARGIGRAFAEAYVREGATVAIADIDIERARQAA   49 (259)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence            57888886 99999999999999999999999998766543

>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A*

Probab=94.10  E-value=0.033  Score=52.47  Aligned_cols=33  Identities=33%  Similarity=0.533  Sum_probs=30.6

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCCeeEEecCCH
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFE  253 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~  253 (359)
                      ..|.|||+|..|.+.|..|++.|++|+++|.++
T Consensus         4 ~dvvIIGaG~~Gl~~A~~La~~G~~V~vie~~~   36 (389)
T 2gf3_A            4 FDVIVVGAGSMGMAAGYQLAKQGVKTLLVDAFD   36 (389)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCC
Confidence            479999999999999999999999999999763

>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*

Probab=94.09  E-value=0.046  Score=46.40  Aligned_cols=35  Identities=29%  Similarity=0.379  Sum_probs=32.7

Q ss_pred             cEEEEECC-CcchHHHHHHHHHCCCeeEEecCCHHH
Q psy9056         221 KTVAVLGA-GLMGAGIAHVTVDKGYNTIVKDSFEKG  255 (359)
Q Consensus       221 ~kI~IIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~  255 (359)
                      ++|.|.|+ |.+|..++..|++.|++|++++++++.
T Consensus         4 ~~ilVtGatG~iG~~l~~~l~~~g~~V~~~~r~~~~   39 (206)
T 1hdo_A            4 KKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSR   39 (206)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGG
T ss_pred             CEEEEEcCCcHHHHHHHHHHHHCCCeEEEEEeChhh
Confidence            68999998 999999999999999999999999864

>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli}

Probab=94.08  E-value=0.032  Score=52.30  Aligned_cols=33  Identities=21%  Similarity=0.435  Sum_probs=30.5

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCCeeEEecCCH
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFE  253 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~  253 (359)
                      ..|.|||+|..|.++|..|+++|++|+++|.++
T Consensus         3 ~dvvIIG~Gi~Gl~~A~~La~~G~~V~vle~~~   35 (372)
T 2uzz_A            3 YDLIIIGSGSVGAAAGYYATRAGLNVLMTDAHM   35 (372)
T ss_dssp             EEEEESCTTHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEecCC
Confidence            379999999999999999999999999999763

>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A*

Probab=94.07  E-value=0.048  Score=50.10  Aligned_cols=34  Identities=18%  Similarity=0.318  Sum_probs=31.6

Q ss_pred             cEEEEECC-CcchHHHHHHHHHCCCeeEEecCCHH
Q psy9056         221 KTVAVLGA-GLMGAGIAHVTVDKGYNTIVKDSFEK  254 (359)
Q Consensus       221 ~kI~IIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~  254 (359)
                      ++|.|.|+ |.+|..++..|++.|++|++++|+++
T Consensus        12 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~   46 (318)
T 2r6j_A           12 SKILIFGGTGYIGNHMVKGSLKLGHPTYVFTRPNS   46 (318)
T ss_dssp             CCEEEETTTSTTHHHHHHHHHHTTCCEEEEECTTC
T ss_pred             CeEEEECCCchHHHHHHHHHHHCCCcEEEEECCCC
Confidence            58999996 99999999999999999999999874

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	359
d1wdka3	186	c.2.1.6 (A:311-496) Fatty oxidation complex alpha	2e-20
d1wdka4	310	c.14.1.3 (A:1-310) Fatty oxidation complex alpha s	2e-20
d1f0ya2	192	c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA	6e-16
d1mj3a_	260	c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Rat	3e-14
d2b0ja2	242	c.2.1.6 (A:1-242) 5,10-methenyltetrahydromethanopt	8e-10
d1bg6a2	184	c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvalin	9e-05

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]} Length = 186

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

 Score = 85.4 bits (210), Expect = 2e-20
 Identities = 55/139 (39%), Positives = 79/139 (56%)

Query: 219 PVKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSA 278
            VK  AVLGAG+MG GIA+ +  KG   ++KD  E G+ +GL +    L G V + +M+ 
Sbjct: 3   DVKQAAVLGAGIMGGGIAYQSASKGTPILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTP 62

Query: 279 LDRDRYLASLVGTLSYDPFKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAI 338
                 L  +  TLSY  F N D+V+EAV E+  +K  V+ E+E  V    ++A+NTS I
Sbjct: 63  AKMAEVLNGIRPTLSYGDFGNVDLVVEAVVENPKVKQAVLAEVENHVREDAILASNTSTI 122

Query: 339 PITKIAAASKRPDKVRNMG 357
            I+ +A A KRP+    M 
Sbjct: 123 SISLLAKALKRPENFVGMH 141

>d1wdka4 c.14.1.3 (A:1-310) Fatty oxidation complex alpha subunit, N-terminal domain {Pseudomonas fragi [TaxId: 296]} Length = 310

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Fatty oxidation complex alpha subunit, N-terminal domain
species: Pseudomonas fragi [TaxId: 296]

 Score = 87.8 bits (216), Expect = 2e-20
 Identities = 58/197 (29%), Positives = 87/197 (44%), Gaps = 17/197 (8%)

Query: 14  CHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKM 73
                 V      +GLPEV LG+ PG GGT RLP+L  + N ++   +GK  +A+ A K+
Sbjct: 123 LAADFRVMADSAKIGLPEVKLGIYPGFGGTVRLPRLIGVDNAVEWIASGKENRAEDALKV 182

Query: 74  GIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDVALK 133
             VD +V               + L   A++   +  SG+L     +    +K+      
Sbjct: 183 SAVDAVVTA-------------DKLGAAALDLIKRAISGELDYKAKRQPKLEKLKL---- 225

Query: 134 FEFVRNQIFGKAKEKVMKMSGGLYPAPLKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTP 193
               +   F  AK  V   +G  YPAP++ +  ++     G     E EA GF++LA T 
Sbjct: 226 NAIEQMMAFETAKGFVAGQAGPNYPAPVEAIKTIQKAANFGRDKALEVEAAGFAKLAKTS 285

Query: 194 QSKGLMGLFRAQTECKK 210
            S  L+GLF    E KK
Sbjct: 286 ASNCLIGLFLNDQELKK 302

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Length = 192

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.0 bits (178), Expect = 6e-16
 Identities = 43/146 (29%), Positives = 75/146 (51%), Gaps = 6/146 (4%)

Query: 220 VKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKK---- 275
           VK V V+G GLMGAGIA V    G+  ++ D  E  LA+    I+  L    K+K     
Sbjct: 4   VKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENP 63

Query: 276 -MSALDRDRYLASLVGTLSYDP-FKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVAT 333
                  ++ L+++  +        + D+V+EA+ E++ +K+++ K ++     H + A+
Sbjct: 64  KAGDEFVEKTLSTIATSTDAASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFAS 123

Query: 334 NTSAIPITKIAAASKRPDKVRNMGRI 359
           NTS++ IT IA A+ R D+   +   
Sbjct: 124 NTSSLQITSIANATTRQDRFAGLHFF 149

>d1mj3a_ c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 260

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Enoyl-CoA hydratase (crotonase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 69.8 bits (170), Expect = 3e-14
 Identities = 24/68 (35%), Positives = 37/68 (54%), Gaps = 2/68 (2%)

Query: 8   ATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKA 67
             +A+ C      +  +   G PE++LG +PGAGGTQRL +       ++M LTG  + A
Sbjct: 113 CELAMMCDIIYAGEKAQ--FGQPEILLGTIPGAGGTQRLTRAVGKSLAMEMVLTGDRISA 170

Query: 68  DKAKKMGI 75
             AK+ G+
Sbjct: 171 QDAKQAGL 178

>d2b0ja2 c.2.1.6 (A:1-242) 5,10-methenyltetrahydromethanopterin hydrogenase, HMD {Archaeon Methanocaldococcus jannaschii [TaxId: 2190]} Length = 242

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 5,10-methenyltetrahydromethanopterin hydrogenase, HMD
species: Archaeon Methanocaldococcus jannaschii [TaxId: 2190]

 Score = 56.1 bits (135), Expect = 8e-10
 Identities = 35/185 (18%), Positives = 60/185 (32%), Gaps = 28/185 (15%)

Query: 192 TPQSKGLMGLFRAQTECKKNRLGKPQT-PVKTVAVLGAGL--MGAGIAHVTVDK------ 242
           T  + G+    RA        +GKP+     +    GA L  +   +  V V        
Sbjct: 13  THAAAGITNFMRAC--EVAKEVGKPEIALTHSSITYGAELLHLVPDVKEVIVSDPCFAEE 70

Query: 243 GYNTIV-----KDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLV------GT 291
               ++     K+  E  L+     I   +   VK K        +    LV        
Sbjct: 71  PGLVVIDEFDPKEVMEAHLSGNPESIMPKIREVVKAKAKELPKPPKACIHLVHPEDVGLK 130

Query: 292 LSYDPF---KNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTS--AIPITKIAAA 346
           ++ D     + AD+VI  + +  N +  +IK+    +P   +V    +       KI   
Sbjct: 131 VTSDDREAVEGADIVITWLPKG-NKQPDIIKKFADAIPEGAIVTHACTIPTTKFAKIFKD 189

Query: 347 SKRPD 351
             R D
Sbjct: 190 LGRED 194

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} Length = 184

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

 Score = 40.7 bits (94), Expect = 9e-05
 Identities = 19/111 (17%), Positives = 35/111 (31%), Gaps = 10/111 (9%)

Query: 221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALD 280
           KT AVLG G  G   A     KG + +  D   + +     +     +G           
Sbjct: 2   KTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDL 61

Query: 281 RDRYLASLVGTLSYDPFKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVV 331
               +   V        K+AD+++  V         +   I + +    ++
Sbjct: 62  LTSDIGLAV--------KDADVILIVVPAI--HHASIAANIASYISEGQLI 102

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	359
d1wdka4	310	Fatty oxidation complex alpha subunit, N-terminal	99.98
d1mj3a_	260	Enoyl-CoA hydratase (crotonase) {Rat (Rattus norve	99.97
d2fw2a1	258	Chromodomain protein CDY2A {Human (Homo sapiens) [	99.97
d1hzda_	266	AUH protein {Human (Homo sapiens) [TaxId: 9606]}	99.96
d1nzya_	269	4-Chlorobenzoyl-CoA dehalogenase {Pseudomonas sp.,	99.96
d1wz8a1	263	Probable enoyl-CoA hydratase TTHA0218 {Thermus the	99.96
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	99.96
d1dcia_	275	Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA iso	99.96
d1uiya_	253	Enoyl-CoA hydratase (crotonase) {Thermus thermophi	99.96
d1q52a_	297	Naphthoate synthase MenB {Mycobacterium tuberculos	99.95
d1ef8a_	261	Methylmalonyl CoA decarboxylase {Escherichia coli	99.95
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	99.95
d2f6qa1	245	Peroxisomal 3,2-trans-enoyl-CoA isomerase {Human (	99.93
d1sg4a1	249	Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA iso	99.91
d2a7ka1	230	Carbapenem biosynthes protein CarB {Pectobacterium	99.88
d1pjha_	266	Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA iso	99.85
d1szoa_	249	6-oxo camphor hydrolase {Rhodococcus erythropolis	99.82
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	99.55
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	99.48
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	99.45
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	99.4
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	99.4
d2ahra2	152	Pyrroline-5-carboxylate reductase ProC {Streptococ	99.39
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	99.36
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	99.33
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	99.3
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	99.24
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	99.21
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	99.21
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	99.2
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	99.19
d1ojua1	142	Malate dehydrogenase {Archaeon Archaeoglobus fulgi	99.19
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	99.17
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	99.16
d1uxja1	142	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	99.14
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	99.12
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	99.1
d2b0ja2	242	5,10-methenyltetrahydromethanopterin hydrogenase,	99.08
d1a5za1	140	Lactate dehydrogenase {Thermotoga maritima [TaxId:	99.08
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	99.06
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	99.06
d2i76a2	153	Hypothetical protein TM1727 {Thermotoga maritima [	99.05
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	99.04
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	99.0
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	99.0
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	98.99
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	98.97
d1hyea1	145	MJ0490, lactate/malate dehydrogenase {Archaeon Met	98.96
d2cvza2	156	Hydroxyisobutyrate dehydrogenase {Thermus thermoph	98.85
d1vjta1	193	Putative alpha-glucosidase TM0752 {Thermotoga mari	98.77
d1o6za1	142	Malate dehydrogenase {Archaeon Haloarcula marismor	98.76
d1obba1	171	Alpha-glucosidase AglA {Thermotoga maritima [TaxId	98.71
d1u8xx1	167	Maltose-6'-phosphate glucosidase GlvA {Bacillus su	98.68
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	98.66
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	98.66
d1s6ya1	169	6-phospho-beta-glucosidase {Bacillus stearothermop	98.58
d1up7a1	162	6-phospho-beta-glucosidase {Thermotoga maritima [T	98.55
d2cmda1	145	Malate dehydrogenase {Escherichia coli [TaxId: 562	98.54
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	98.26
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	98.25
d5mdha1	154	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	98.24
d7mdha1	175	Malate dehydrogenase {Sorghum (Sorghum vulgare), c	98.24
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	98.18
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	98.17
d1j4aa1	197	D-lactate dehydrogenase {Lactobacillus helveticus	98.04
d1gdha1	191	D-glycerate dehydrogenase {Hyphomicrobium methylov	98.03
d1mx3a1	193	Transcription corepressor CtbP {Human (Homo sapien	98.03
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	97.99
d1dxya1	199	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	97.95
d1y7ta1	154	Malate dehydrogenase {Thermus thermophilus [TaxId:	97.91
d2naca1	188	Formate dehydrogenase {Pseudomonas sp., strain 101	97.89
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	97.87
d1ygya1	184	Phosphoglycerate dehydrogenase {Mycobacterium tube	97.84
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	97.75
d1sc6a1	188	Phosphoglycerate dehydrogenase {Escherichia coli [	97.64
d1np3a2	182	Class I ketol-acid reductoisomerase (KARI) {Pseudo	97.5
d1xeaa1	167	Putative oxidoreductase VCA1048 {Vibrio cholerae [	97.5
d1v8ba1	163	S-adenosylhomocystein hydrolase {Plasmodium falcip	97.47
d1ydwa1	184	Probable oxidoreductase At4g09670 {Thale cress (Ar	97.42
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	97.39
d1qmga2	226	Class II ketol-acid reductoisomerase (KARI) {Spina	97.39
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	97.38
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	97.29
d1tlta1	164	Virulence factor MviM {Escherichia coli [TaxId: 56	97.29
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	97.28
d1vm6a3	128	Dihydrodipicolinate reductase {Thermotoga maritima	97.19
d1j5pa4	132	Hypothetical protein TM1643 {Thermotoga maritima [	97.17
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	97.15
d1t4ba1	146	Aspartate beta-semialdehyde dehydrogenase {Escheri	97.07
d1zh8a1	181	Hypothetical protein TM0312 {Thermotoga maritima [	97.04
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	96.88
d1h6da1	221	Glucose-fructose oxidoreductase, N-terminal domain	96.87
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	96.84
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	96.82
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	96.81
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	96.79
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	96.78
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	96.76
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	96.74
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	96.72
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	96.72
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	96.67
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	96.62
d1f06a1	170	Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb	96.61
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	96.57
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	96.57
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	96.56
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	96.55
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	96.52
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	96.5
d1omoa_	320	Archaeal alanine dehydrogenase {Archaeon Archaeogl	96.49
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	96.49
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	96.49
d1c1da1	201	Phenylalanine dehydrogenase {Rhodococcus sp., M4 [	96.47
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	96.45
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	96.42
d1b7go1	178	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	96.42
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	96.41
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	96.41
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	96.39
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	96.38
d1nvmb1	157	Acetaldehyde dehydrogenase (acylating) {Pseudomona	96.23
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	96.21
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	96.2
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	96.19
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	96.19
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	96.15
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	96.12
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	96.1
d2hjsa1	144	Usg-1 protein homolog PA3116 {Pseudomonas aerugino	96.09
d1cf2o1	171	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	96.08
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	96.06
d1y1pa1	342	Aldehyde reductase II {Sporobolomyces salmonicolor	96.06
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	96.04
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	96.04
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	96.0
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	95.99
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	95.98
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	95.95
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	95.95
d2cbya1	179	Clp protease, ClpP subunit {Mycobacterium tubercul	95.91
d1y81a1	116	Hypothetical protein PF0725 {Pyrococcus furiosus [	95.91
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	95.9
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	95.89
d1yxma1	297	Peroxisomal trans 2-enoyl CoA reductase {Human (Ho	95.85
d1mb4a1	147	Aspartate beta-semialdehyde dehydrogenase {Vibrio	95.85
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	95.79
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	95.77
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	95.77
d2czca2	172	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	95.76
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	95.75
d1xu9a_	269	11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom	95.72
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	95.71
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	95.65
d1y7oa1	192	Clp protease, ClpP subunit {Streptococcus pneumoni	95.62
d1x7da_	340	Ornithine cyclodeaminase {Pseudomonas putida [TaxI	95.59
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	95.52
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	95.51
d1kifa1	246	D-aminoacid oxidase, N-terminal domain {Pig (Sus s	95.43
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	95.4
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	95.38
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	95.36
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	95.35
d1diha1	162	Dihydrodipicolinate reductase {Escherichia coli [T	95.35
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	95.34
d2f6ia1	190	Clp protease, ClpP subunit {Plasmodium falciparum	95.32
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	95.29
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	95.26
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	95.19
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	95.19
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	95.12
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	95.11
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	95.09
d1tg6a1	193	Clp protease, ClpP subunit {Human (Homo sapiens),	95.08
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	95.03
d1nffa_	244	Putative oxidoreductase Rv2002 {Mycobacterium tube	94.98
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	94.98
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	94.95
d2g17a1	179	N-acetyl-gamma-glutamyl-phosphate reductase ArgC {	94.92
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	94.92
d1yg6a1	183	Clp protease, ClpP subunit {Escherichia coli [TaxI	94.88
d2a4ka1	241	beta-keto acyl carrier protein reductase {Thermus	94.86
d2nvwa1	237	Galactose/lactose metabolism regulatory protein GA	94.85
d1iuka_	136	Hypothetical protein TT1466 {Thermus thermophilus	94.84
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	94.84
d1leha1	230	Leucine dehydrogenase {Bacillus sphaericus [TaxId:	94.83
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	94.79
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	94.75
d1yl7a1	135	Dihydrodipicolinate reductase {Mycobacterium tuber	94.74
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	94.74
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	94.71
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	94.7
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	94.68
d2csua1	129	Acetate-CoA ligase alpha chain, AcdA, N-terminal d	94.65
d2d59a1	139	Hypothetical protein PH1109 {Pyrococcus horikoshii	94.63
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	94.58
d1q7ba_	243	beta-keto acyl carrier protein reductase {Escheric	94.56
d1hxha_	253	3beta/17beta hydroxysteroid dehydrogenase {Comamon	94.55
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	94.52
d1zk4a1	251	R-specific alcohol dehydrogenase {Lactobacillus br	94.46
d1wmaa1	275	Carbonyl reductase/20beta-hydroxysteroid dehydroge	94.45
d1bdba_	276	Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps	94.42
d1a4ia1	170	Methylenetetrahydrofolate dehydrogenase/cyclohydro	94.41
d1hdca_	254	3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre	94.36
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	94.3
d2bd0a1	240	Bacterial sepiapterin reductase {Chlorobium tepidu	94.23
d1ydea1	250	Retinal dehydrogenase/reductase 3 {Human (Homo sap	94.19
d1vkna1	176	N-acetyl-gamma-glutamyl-phosphate reductase ArgC {	94.16
d1k2wa_	256	Sorbitol dehydrogenase {Rhodobacter sphaeroides [T	94.16
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	94.14
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	94.13
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	94.1
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	93.97
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	93.94
d2h7ma1	268	Enoyl-ACP reductase {Mycobacterium tuberculosis, T	93.92
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	93.87
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	93.85
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	93.85
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	93.83
d1b0aa1	166	Methylenetetrahydrofolate dehydrogenase/cyclohydro	93.82
d1ulua_	256	Enoyl-ACP reductase {Thermus thermophilus [TaxId:	93.8
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	93.76
d2cvoa1	183	Putative semialdehyde dehydrogenase {Rice (Oryza s	93.74
d1qsga_	258	Enoyl-ACP reductase {Escherichia coli [TaxId: 562]	93.68
d1ulsa_	242	beta-keto acyl carrier protein reductase {Thermus	93.57
d2gz1a1	154	Aspartate beta-semialdehyde dehydrogenase {Strepto	93.55
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	93.47
d1pn0a1	360	Phenol hydroxylase {Soil-living yeast (Trichosporo	93.45
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	93.35
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	93.33
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	93.27
d2pd4a1	274	Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2	93.23
d1oaaa_	259	Sepiapterin reductase {Mouse (Mus musculus) [TaxId	93.1
d2q46a1	252	Hypothetical protein At5g02240 (T7H20_290) {Thale	93.05
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	92.99
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	92.92
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	92.87
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	92.8
d1xgka_	350	Negative transcriptional regulator NmrA {Aspergill	92.77
d1cyda_	242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	92.66
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	92.36
d2ag5a1	245	Dehydrogenase/reductase SDR family member 6, DHRS6	92.3
d1mv8a3	136	GDP-mannose 6-dehydrogenase, GDP-binding domain {P	92.28
d1vl0a_	281	DTDP-4-dehydrorhamnose reductase RfbD {Clostridium	92.14
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	92.02
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	92.0
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	91.98
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	91.87
d1x1ta1	260	D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas	91.8
d2o23a1	248	Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho	91.71
d1o5ia_	234	beta-keto acyl carrier protein reductase {Thermoto	91.52
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	91.51
d1edoa_	244	beta-keto acyl carrier protein reductase {Oil seed	91.25
d1geea_	261	Glucose dehydrogenase {Bacillus megaterium [TaxId:	91.18
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	91.1
d1rkxa_	356	CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc	91.09
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	91.04
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	90.98
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	90.92
d1y0pa2	308	Flavocytochrome c3 (respiratory fumarate reductase	90.83
d1rp0a1	278	Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara	90.8
d1udca_	338	Uridine diphosphogalactose-4-epimerase (UDP-galact	90.74
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	90.71
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	90.59
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	90.45
d1lc0a1	172	Biliverdin reductase {Rat (Rattus norvegicus) [Tax	90.4
d2c5aa1	363	GDP-mannose-3', 5'-epimerase {Thale cress (Arabido	90.37
d2b69a1	312	UDP-glucuronate decarboxylase 1 {Human (Homo sapie	90.27
d2d1ya1	248	Hypothetical protein TTHA0369 {Thermus thermophilu	90.11
d1sbya1	254	Drosophila alcohol dehydrogenase {Fly (Drosophila	90.06
d1v59a1	233	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	89.92
d1dhra_	236	Dihydropteridin reductase (pteridine reductase) {R	89.9
d1fl2a1	184	Alkyl hydroperoxide reductase subunit F (AhpF), C-	89.9
d2ew8a1	247	(s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb	89.89
d1rpna_	321	GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos	89.76
d1ek6a_	346	Uridine diphosphogalactose-4-epimerase (UDP-galact	89.73
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	89.57
d1e7wa_	284	Dihydropteridin reductase (pteridine reductase) {L	89.57
d1v9la1	242	Glutamate dehydrogenase {Pyrobaculum islandicum [T	89.51
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	89.48
d1ojta1	229	Dihydrolipoamide dehydrogenase {Neisseria meningit	89.41
d1snya_	248	Carbonyl reductase sniffer {Fruit fly (Drosophila	89.28
d1fjha_	257	3-alpha-hydroxysteroid dehydrogenase {Comamonas te	89.24
d1i24a_	393	Sulfolipid biosynthesis protein SQD1 {Thale cress	89.17
d1d4ca2	322	Flavocytochrome c3 (respiratory fumarate reductase	89.11
d1uzma1	237	beta-keto acyl carrier protein reductase {Mycobact	89.03
d1ooea_	235	Dihydropteridin reductase (pteridine reductase) {N	88.98
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	88.97
d2f5va1	379	Pyranose 2-oxidase {White-rot fungus (Peniophora s	88.88
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	88.73
d1oc2a_	346	dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus	88.4
d1n4wa1	367	Cholesterol oxidase of GMC family {Streptomyces sp	88.36
d1yovb1	426	UBA3 {Human (Homo sapiens) [TaxId: 9606]}	88.21
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	88.03
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	87.89
d1d7ya1	183	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	87.86
d2h1qa1	251	Hypothetical protein Dhaf_3308 {Desulfitobacterium	87.78
d1lvla1	220	Dihydrolipoamide dehydrogenase {Pseudomonas putida	87.74
d1a9xa4	121	Carbamoyl phosphate synthetase (CPS), large subuni	87.7
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	87.6
d1mxha_	266	Dihydropteridin reductase (pteridine reductase) {T	87.5
d3grsa1	221	Glutathione reductase {Human (Homo sapiens) [TaxId	87.25
d1sb8a_	341	UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo	87.19
d1h6va1	235	Mammalian thioredoxin reductase {Rat (Rattus norve	87.12
d1e6ua_	315	GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (	86.92
d2gmha1	380	Electron transfer flavoprotein-ubiquinone oxidored	86.9
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	86.84
d3coxa1	370	Cholesterol oxidase of GMC family {Brevibacterium	86.83
d1n7ha_	339	GDP-mannose 4,6-dehydratase {Thale-cress (Arabidop	86.82
d1ebda1	223	Dihydrolipoamide dehydrogenase {Bacillus stearothe	86.8
d1t2aa_	347	GDP-mannose 4,6-dehydratase {Human (Homo sapiens)	86.79
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	86.57
d2gjca1	311	Thiazole biosynthetic enzyme Thi4 {Baker's yeast (	86.53
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	86.33
d1inla_	295	Spermidine synthase {Thermotoga maritima [TaxId: 2	86.17
d2bs2a2	336	Fumarate reductase {Wolinella succinogenes [TaxId:	86.09
d1i9ga_	264	Probable methyltransferase Rv2118c {Mycobacterium	86.03
d1qo8a2	317	Flavocytochrome c3 (respiratory fumarate reductase	85.81
d1o8ca2	77	Hypothetical protein YhdH {Escherichia coli [TaxId	85.73
d1gz6a_	302	(3R)-hydroxyacyl-CoA dehydrogenase domain of estra	85.73
d1orra_	338	CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId:	85.51
d1xj5a_	290	Spermidine synthase {Thale cress (Arabidopsis thal	85.43
d3lada1	229	Dihydrolipoamide dehydrogenase {Azotobacter vinela	85.14
d1uaya_	241	Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t	84.48
d1iy9a_	274	Spermidine synthase {Bacillus subtilis [TaxId: 142	84.23
d1a9xa3	127	Carbamoyl phosphate synthetase (CPS), large subuni	84.22
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	84.15
d2afhe1	289	Nitrogenase iron protein {Azotobacter vinelandii [	84.13
d2bkaa1	232	TAT-interacting protein TIP30 {Human (Homo sapiens	84.08
d2a7sa1	258	Propionyl-CoA carboxylase complex B subunit, PccB	84.01
d1onfa1	259	Glutathione reductase {Plasmodium falciparum [TaxI	83.73
d2blla1	342	Polymyxin resistance protein ArnA (PrmI) {Escheric	83.69
d1yo6a1	250	Putative carbonyl reductase sniffer {Caenorhabditi	83.68
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	83.51
d1mjfa_	276	Putative spermidine synthetase PF0127 (SpeE) {Arch	83.49
d1db3a_	357	GDP-mannose 4,6-dehydratase {Escherichia coli [Tax	83.45
d2dt5a2	126	Transcriptional repressor Rex, C-terminal domain {	83.16
d1kdga1	360	Flavoprotein domain of flavocytochrome cellobiose	83.15
d1z45a2	347	Uridine diphosphogalactose-4-epimerase (UDP-galact	82.69
d2f9ya1	316	Acetyl-coenzyme A carboxylase carboxyl transferase	82.58
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	82.54
d1pvva2	163	Ornithine transcarbamoylase {Archaeon Pyrococcus f	82.18
d2a35a1	212	Hypothetical protein PA4017 {Pseudomonas aeruginos	82.09
d1dusa_	194	Hypothetical protein MJ0882 {Archaeon Methanococcu	82.06
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	81.65
d1xvaa_	292	Glycine N-methyltransferase {Rat (Rattus norvegicu	81.61
d2o07a1	285	Spermidine synthase {Human (Homo sapiens) [TaxId:	81.58
d1u2za_	406	Catalytic, N-terminal domain of histone methyltran	81.01
d2b2ca1	312	Spermidine synthase {Caenorhabditis elegans [TaxId	80.69
d1uira_	312	Spermidine synthase {Thermus thermophilus [TaxId:	80.65
d1hwxa1	293	Glutamate dehydrogenase {Cow (Bos taurus) [TaxId:	80.4
d1zmta1	252	Halohydrin dehalogenase HheC {Agrobacterium tumefa	80.22
d1dxha2	185	Ornithine transcarbamoylase {Pseudomonas aeruginos	80.15
d1d7oa_	297	Enoyl-ACP reductase {Oil seed rape (Brassica napus	80.15

>d1wdka4 c.14.1.3 (A:1-310) Fatty oxidation complex alpha subunit, N-terminal domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Fatty oxidation complex alpha subunit, N-terminal domain
species: Pseudomonas fragi [TaxId: 296]

Probab=99.98  E-value=2.1e-32  Score=257.10  Aligned_cols=191  Identities=32%  Similarity=0.495  Sum_probs=169.1

Q ss_pred             CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceec
Q psy9056           1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLV   80 (359)
Q Consensus         1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~   80 (359)
                      |+|+|||++|+++|||||++++  ++|++||+++|++|++|++++|++++|..++++|+++|++++++||+++||||+++
T Consensus       112 G~a~GgG~elal~cD~ria~~~--a~f~~pe~~~Gl~P~~gg~~~L~r~iG~~~a~~lll~g~~~~a~eA~~~Glv~~vv  189 (310)
T d1wdka4         112 GIALGGGLEMCLAADFRVMADS--AKIGLPEVKLGIYPGFGGTVRLPRLIGVDNAVEWIASGKENRAEDALKVSAVDAVV  189 (310)
T ss_dssp             SCEETHHHHHHHTSSEEEEETT--CEEECGGGGGTCCCCSSHHHHHHHHHCHHHHHHHHHHCCCEEHHHHHHTTSSSEEE
T ss_pred             ccccccccccchhhhhhhcccc--ceecccccccCCCccccchhhhhhhhhhhhhhhhhccccccCHHHHhhccCccEEc
Confidence            7899999999999999999998  99999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCcccccc-CCCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHhhCCCCCc
Q psy9056          81 EPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINR-TKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPA  159 (359)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~-~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (359)
                      |+             +++.+.+.++++++++.+..... .+...     .............+......+.+++.+++|+
T Consensus       190 ~~-------------~~l~~~a~~~a~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pA  251 (310)
T d1wdka4         190 TA-------------DKLGAAALDLIKRAISGELDYKAKRQPKL-----EKLKLNAIEQMMAFETAKGFVAGQAGPNYPA  251 (310)
T ss_dssp             CG-------------GGHHHHHHHHHHHHHTTSSCHHHHHGGGG-----SCCSCCHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred             cH-------------HHHHHHHHHHHHHHHhcccchhhhhhhhc-----ccccccchhhhHHHHHhhhhhhhhccCCChH
Confidence            98             89999999999999988764332 11110     0011123345556777888888999999999


Q ss_pred             HHHHHHHHHHhhccChhhHHHHHHHHhhhhhcChhhHHHHHhHhhhhhhhhc
Q psy9056         160 PLKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQTECKKN  211 (359)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~s~~~~~~~~af~~k~~~~~~  211 (359)
                      +.++++.++.+...+++++++.|.+.|.+++.|++++++|++|++||..++.
T Consensus       252 ~~~~l~~v~~~~~~~~~~~L~~E~~~f~~l~~t~~a~~~i~aF~~kr~~~k~  303 (310)
T d1wdka4         252 PVEAIKTIQKAANFGRDKALEVEAAGFAKLAKTSASNCLIGLFLNDQELKKK  303 (310)
T ss_dssp             HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhhhcCC
Confidence            9999999999999999999999999999999999999999999999988774

>d1mj3a_ c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Enoyl-CoA hydratase (crotonase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.97  E-value=6.3e-31  Score=240.75  Aligned_cols=154  Identities=26%  Similarity=0.371  Sum_probs=144.4

Q ss_pred             CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceec
Q psy9056           1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLV   80 (359)
Q Consensus         1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~   80 (359)
                      |+|+|||++|+++||||||+++  ++|++||+++|++|++|++++|++++|.+++++|+++|++++++||+++|||++++
T Consensus       106 G~a~GgG~~lal~~D~~ia~~~--a~f~~pe~~~Gl~p~~~~~~~l~~~ig~~~a~~l~l~g~~~~a~eA~~~Glv~~v~  183 (260)
T d1mj3a_         106 GYALGGGCELAMMCDIIYAGEK--AQFGQPEILLGTIPGAGGTQRLTRAVGKSLAMEMVLTGDRISAQDAKQAGLVSKIF  183 (260)
T ss_dssp             SEEETHHHHHHHHSSEEEEETT--CEEECGGGGGTCCCCSSTTTHHHHHHCHHHHHHHHHHCCCEEHHHHHHHTSCSEEE
T ss_pred             CeEeHHHHHHHHHCCEEEEcCC--CEEECchhccCcCCcccHHHHHHHHhCHHHHHHHHHcCcccCchhhccCCCceeee
Confidence            6899999999999999999998  99999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccccccCCCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHhhCCCCCcH
Q psy9056          81 EPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAP  160 (359)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (359)
                      +.             +++.+.+.+++.+++..++.                                           +.
T Consensus       184 ~~-------------~~~~~~a~~~a~~i~~~~~~-------------------------------------------a~  207 (260)
T d1mj3a_         184 PV-------------ETLVEEAIQCAEKIANNSKI-------------------------------------------IV  207 (260)
T ss_dssp             CT-------------TTHHHHHHHHHHHHHHSCHH-------------------------------------------HH
T ss_pred             cc-------------cccccccccccccccchhhH-------------------------------------------HH
Confidence            98             78889999999999998773                                           33


Q ss_pred             HHHHHHHHHhhccChhhHHHHHHHHhhhhhcChhhHHHHHhHhhhhhhhhcC
Q psy9056         161 LKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQTECKKNR  212 (359)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~s~~~~~~~~af~~k~~~~~~~  212 (359)
                      ..+|+.++.....+++++++.|.+.+..++.|+|++||+++|++||+|+|..
T Consensus       208 ~~~K~~l~~~~~~~l~~~l~~E~~~~~~~~~s~d~~egi~aFleKR~P~f~~  259 (260)
T d1mj3a_         208 AMAKESVNAAFEMTLTEGNKLEKKLFYSTFATDDRREGMSAFVEKRKANFKD  259 (260)
T ss_dssp             HHHHHHHHGGGSSCHHHHHHHHHHHHHHGGGSHHHHHHHHHHHTTSCCCCCC
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHhCCCCCCCCC
Confidence            3677888888889999999999999999999999999999999999998854

>d2fw2a1 c.14.1.3 (A:3-260) Chromodomain protein CDY2A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Chromodomain protein CDY2A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=5.4e-31  Score=241.24  Aligned_cols=152  Identities=18%  Similarity=0.136  Sum_probs=141.5

Q ss_pred             CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceec
Q psy9056           1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLV   80 (359)
Q Consensus         1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~   80 (359)
                      |.|+|||++|+++|||||++++  ++|++||+++|++|++|++++|++++|..++++|++||++++++||+++||||+++
T Consensus       107 G~a~GgG~~lal~~D~~ia~~~--a~f~~pe~~~Gl~p~~g~~~~l~r~ig~~~a~~l~l~g~~~~a~eA~~~Glv~~vv  184 (258)
T d2fw2a1         107 GPAIGLGASILPLCDLVWANEK--AWFQTPYTTFGQSPDGCSSITFPKMMGKASANEMLIAGRKLTAREACAKGLVSQVF  184 (258)
T ss_dssp             SCEETHHHHTGGGSSEEEEETT--CEEECCHHHHTCCCCTTHHHHHHHHHCHHHHHHHHTTCCEEEHHHHHHTTSCSEEE
T ss_pred             cccccccccccccccccceecc--cceeeccccccccccccccccchhhcCccccchhhccCcccccccccccccccccc
Confidence            6899999999999999999998  99999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccccccCCCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHhhCCCCCcH
Q psy9056          81 EPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAP  160 (359)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (359)
                      |+             +++.+++.++++++++.|+.                                           +.
T Consensus       185 ~~-------------~~l~~~a~~~a~~i~~~~~~-------------------------------------------a~  208 (258)
T d2fw2a1         185 LT-------------GTFTQEVMIQIKELASYNAI-------------------------------------------VL  208 (258)
T ss_dssp             CS-------------TTHHHHHHHHHHHHTTSCHH-------------------------------------------HH
T ss_pred             cc-------------cccccccchhhhhhhhhhHH-------------------------------------------HH
Confidence            98             88999999999999988762                                           22


Q ss_pred             HHHHHHHHHhhccChhhHHHHHHHHhhhhhcChhhHHHHHhHhhhhhhhh
Q psy9056         161 LKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQTECKK  210 (359)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~s~~~~~~~~af~~k~~~~~  210 (359)
                      ..+|+.++.....+++++++.|.+.+..++.|+|++||+++|++||+|+|
T Consensus       209 ~~~K~~~~~~~~~~l~~~~~~e~~~~~~~~~s~d~~Egi~af~EKR~p~f  258 (258)
T d2fw2a1         209 EECKALVRCNIKLELEQANERECEVLRKIWSSAQGIESMLKYVENKIDEF  258 (258)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHSSCCCC
T ss_pred             HHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHhCCCCCCC
Confidence            24667778777788999999999999999999999999999999999875

>d1hzda_ c.14.1.3 (A:) AUH protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: AUH protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=2.7e-30  Score=237.57  Aligned_cols=157  Identities=22%  Similarity=0.317  Sum_probs=140.4

Q ss_pred             CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceec
Q psy9056           1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLV   80 (359)
Q Consensus         1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~   80 (359)
                      |+|+|||++|+++|||||++++  ++|++||+++|++|++|++++|++++|..++++|++||++++++||+++||||++|
T Consensus       108 G~a~GgG~~lal~~D~~ia~~~--a~f~~pe~~~G~~p~~g~~~~l~~~ig~~~a~~l~ltg~~~~a~eA~~~Glv~~vv  185 (266)
T d1hzda_         108 GLALGGGLELALACDIRVAASS--AKMGLVETKLAIIPGGGGTQRLPRAIGMSLAKELIFSARVLDGKEAKAVGLISHVL  185 (266)
T ss_dssp             EEEETHHHHHHHHSSEEEEETT--CEEECCGGGGTCCCCSSHHHHHHHHHCHHHHHHHHHHTCEEEHHHHHHHTSCSEEE
T ss_pred             cccccccceeccccceeeecCC--cEEeecccceeecCCccceeeehhhhHHHHHHhhhccCCccCHHHhhccccccccc
Confidence            5799999999999999999998  99999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccccccCCCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHhhCCCCCcH
Q psy9056          81 EPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAP  160 (359)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (359)
                      |+.         +..+.+.+.+.+++++++..|+.                                           +.
T Consensus       186 ~~~---------~l~~~~~~~a~~~a~~i~~~~p~-------------------------------------------a~  213 (266)
T d1hzda_         186 EQN---------QEGDAAYRKALDLAREFLPQGPV-------------------------------------------AM  213 (266)
T ss_dssp             CCC---------TTSCHHHHHHHHHHHTTTTSCHH-------------------------------------------HH
T ss_pred             Chh---------hhhhHHHHHHHHHHHhcccCChH-------------------------------------------HH
Confidence            971         11145667777778888877762                                           23


Q ss_pred             HHHHHHHHHhhccChhhHHHHHHHHhhhhhcChhhHHHHHhHhhhhhhhhc
Q psy9056         161 LKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQTECKKN  211 (359)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~s~~~~~~~~af~~k~~~~~~  211 (359)
                      ..+|+.++++...+++++++.|.+.+..++.|+|++||+++|++||+|+|.
T Consensus       214 ~~~K~~l~~~~~~~~~~~l~~e~~~~~~~~~s~d~~Eg~~AF~eKR~P~f~  264 (266)
T d1hzda_         214 RVAKLAINQGMEVDLVTGLAIEEACYAQTIPTKDRLEGLLAFKEKRPPRYK  264 (266)
T ss_dssp             HHHHHHHHHHHTSCHHHHHHHHHHHHHTTTTCHHHHHHHHHHTTTSCCCCC
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHhCCCCCCCC
Confidence            356778888888999999999999999999999999999999999998884

>d1nzya_ c.14.1.3 (A:) 4-Chlorobenzoyl-CoA dehalogenase {Pseudomonas sp., strain CBS-3 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: 4-Chlorobenzoyl-CoA dehalogenase
species: Pseudomonas sp., strain CBS-3 [TaxId: 306]

Probab=99.96  E-value=1.2e-29  Score=233.55  Aligned_cols=158  Identities=16%  Similarity=0.200  Sum_probs=146.7

Q ss_pred             CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceec
Q psy9056           1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLV   80 (359)
Q Consensus         1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~   80 (359)
                      |+|+|||++|+++|||||++++  ++|++||+++|+.|++|++.++++++|..+++++++||+.++++||+++||||+++
T Consensus       109 G~a~GgG~~lal~~D~ria~~~--a~~~~~~~~~g~~~~~g~~~~l~~~ig~~~a~~l~ltg~~i~a~eA~~~Glv~~vv  186 (269)
T d1nzya_         109 GVAAGGGLGISLASDMAICADS--AKFVCAWHTIGIGNDTATSYSLARIVGMRRAMELMLTNRTLYPEEAKDWGLVSRVY  186 (269)
T ss_dssp             SEEETHHHHHHHHSSEEEEETT--CEEECCHHHHTCCCCTTHHHHHHHHHHHHHHHHHHHHCCCBCHHHHHHHTSCSCEE
T ss_pred             hhcCCCceeeeecccHhhhhhh--hhhcccccccccccccccccccccccChhhhhhccccccccchhHHHHcCCccccc
Confidence            6899999999999999999998  99999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccccccCCCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHhhCCCCCcH
Q psy9056          81 EPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAP  160 (359)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (359)
                      |+             +++.+.+.++++++++.|+.                                           +.
T Consensus       187 ~~-------------~~l~~~a~~~a~~la~~~~~-------------------------------------------a~  210 (269)
T d1nzya_         187 PK-------------DEFREVAWKVARELAAAPTH-------------------------------------------LQ  210 (269)
T ss_dssp             CH-------------HHHHHHHHHHHHHHHHSCHH-------------------------------------------HH
T ss_pred             cc-------------cccccchhhhhhhhhhhhHH-------------------------------------------HH
Confidence            98             89999999999999988762                                           22


Q ss_pred             HHHHHHHHHhhccChhhHHHHHHHHhhhhhcChhhHHHHHhHhhhhhhhhcCCCCC
Q psy9056         161 LKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQTECKKNRLGKP  216 (359)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~s~~~~~~~~af~~k~~~~~~~~~~~  216 (359)
                      ..+|+.++++...+++++++.|.+.+..++.++|++|+|++|++||+|+|.+...|
T Consensus       211 ~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~~~~e~v~aflekrkp~~~~~~~~  266 (269)
T d1nzya_         211 VMAKERFHAGWMQPVEECTEFEIQNVIASVTHPHFMPCLTRFLDGHRADRPQVELP  266 (269)
T ss_dssp             HHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHSTTHHHHHHHHHTTCCTTCCSSCCC
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHCCCCCCcCCCCCC
Confidence            35677888888899999999999999999999999999999999999998765544

>d1wz8a1 c.14.1.3 (A:2-264) Probable enoyl-CoA hydratase TTHA0218 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Probable enoyl-CoA hydratase TTHA0218
species: Thermus thermophilus [TaxId: 274]

Probab=99.96  E-value=2e-29  Score=231.35  Aligned_cols=151  Identities=19%  Similarity=0.112  Sum_probs=136.7

Q ss_pred             CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceec
Q psy9056           1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLV   80 (359)
Q Consensus         1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~   80 (359)
                      |+|+|||++|+++|||||++++  ++|++||+++|++|++|+++++++++|..++++|+++|++++++||+++||||+++
T Consensus       112 G~a~GgG~~lal~~D~~ia~~~--a~f~~pe~~~Gl~p~~~~~~~l~~~~G~~~a~~l~l~g~~i~a~eA~~~Glv~~vv  189 (263)
T d1wz8a1         112 KVAVGAGLALALAADIAVVGKG--TRLLDGHLRLGVAAGDHAVLLWPLLVGMAKAKYHLLLNEPLTGEEAERLGLVALAV  189 (263)
T ss_dssp             SEEETHHHHHHHHSSEEEEETT--CEEECCHHHHTSCCTTTHHHHTHHHHCHHHHHHHHHHTCCEEHHHHHHHTSSSEEE
T ss_pred             cccccccccccccccccccccc--ccccccccccccccccccccccccccccchhhhhcccccccchhHHHhcCCccccc
Confidence            6799999999999999999998  99999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccccccCCCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHhhCCCCCcH
Q psy9056          81 EPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAP  160 (359)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (359)
                      |+             +++.+.+.+++++|++.|+..                                           .
T Consensus       190 ~~-------------~~l~~~a~~~a~~la~~~~~a-------------------------------------------l  213 (263)
T d1wz8a1         190 ED-------------EKVYEKALEVAERLAQGPKEA-------------------------------------------L  213 (263)
T ss_dssp             CG-------------GGHHHHHHHHHHHHHTSCHHH-------------------------------------------H
T ss_pred             ch-------------hhhhHHHHHHHHHhhccHHHH-------------------------------------------H
Confidence            98             889999999999999988732                                           2


Q ss_pred             HHHHHHHHHhhccChhhHHHHHHHHhhhhhcChhhHHHHHhHhhhhhhhh
Q psy9056         161 LKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQTECKK  210 (359)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~s~~~~~~~~af~~k~~~~~  210 (359)
                      ..+|+++++..... .+.++.|.+.+..++.|+|++||+++|++||+|+|
T Consensus       214 ~~~K~~l~~~~~~~-~~~~~~e~~~~~~~~~s~d~~Egi~Af~eKR~P~f  262 (263)
T d1wz8a1         214 HHTKHALNHWYRSF-LPHFELSLALEFLGFSGKELEEGLKALKEKRPPEF  262 (263)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHGGGSHHHHHHHHHHHTTSCCCC
T ss_pred             HHHHHHHHHHHhCh-HHHHHHHHHHHHHHccCHHHHHHHHHHhCCCCCCC
Confidence            24556666655444 45688899999999999999999999999999887

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=99.96  E-value=1.3e-28  Score=214.38  Aligned_cols=142  Identities=39%  Similarity=0.566  Sum_probs=137.5

Q ss_pred             CCccEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcCCC
Q psy9056         218 TPVKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPF  297 (359)
Q Consensus       218 ~~~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l  297 (359)
                      ..|+||+|||+|.||++||..++++|++|++||++++.++.+.+++...+......+.+.+...+..++++..+++++++
T Consensus         2 ~~I~~vaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~   81 (186)
T d1wdka3           2 KDVKQAAVLGAGIMGGGIAYQSASKGTPILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRPTLSYGDF   81 (186)
T ss_dssp             CCCSSEEEECCHHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEEESSSTTG
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHhCCCeEEEEECCHHHHhhhhhhhhhhHHhhhcccccchhhhhhhhceeecccccccc
Confidence            56899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCcHHHHHhhcCCCCcEEeecCC
Q psy9056         298 KNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPITKIAAASKRPDKVRNMGRI  359 (359)
Q Consensus       298 ~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~rvig~h~~  359 (359)
                      .++|+||||+||++++|+.+|++|.+++++++||+||||+++++++++.+.+|+|++|+|||
T Consensus        82 ~~adlViEav~E~l~~K~~lf~~l~~~~~~~~IiaSnTS~l~i~~la~~~~~p~r~~g~Hf~  143 (186)
T d1wdka3          82 GNVDLVVEAVVENPKVKQAVLAEVENHVREDAILASNTSTISISLLAKALKRPENFVGMHFF  143 (186)
T ss_dssp             GGCSEEEECCCSCHHHHHHHHHHHHTTSCTTCEEEECCSSSCHHHHGGGCSCGGGEEEEECC
T ss_pred             cccceeeeeecchHHHHHHHHHHHHhhcCCCeeEEeccccccHHHHHHhccCchheEeeccc
Confidence            99999999999999999999999999999999999999999999999999999999999997

>d1dcia_ c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.96  E-value=7.1e-29  Score=228.94  Aligned_cols=156  Identities=19%  Similarity=0.152  Sum_probs=140.2

Q ss_pred             CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHH-HHHHHhcCCCCCHHHHHHcCCccee
Q psy9056           1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPN-VLDMTLTGKTLKADKAKKMGIVDQL   79 (359)
Q Consensus         1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~-a~~~~ltg~~~~a~eA~~~Glv~~~   79 (359)
                      |.|+|||++|+++|||||++++  ++|++||+++|++|++|+++++++++|... +.+++++|+.++++||+++||||++
T Consensus       116 G~a~GgG~~lal~~D~ria~~~--a~f~~pe~~~Gl~p~~~~~~~~~~~~g~~~~~~~ll~~g~~~~a~eA~~~Glv~~v  193 (275)
T d1dcia_         116 GGCIGGGVDLISACDIRYCTQD--AFFQVKEVDVGLAADVGTLQRLPKVIGNRSLVNELTFTARKMMADEALDSGLVSRV  193 (275)
T ss_dssp             SEEETHHHHHHTTSSEEEEETT--CEEECCGGGGTSCCCSSHHHHGGGTCSCHHHHHHHHHHCCEEEHHHHHHHTSSSEE
T ss_pred             eEeehhhHHHHhhcCchhhccC--ccccchhcccccccccccccccccccccccccccccccccccchhhhccCCCceee
Confidence            6799999999999999999999  999999999999999999999999999654 5689999999999999999999999


Q ss_pred             cCCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccccccCCCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHhhCCCCCc
Q psy9056          80 VEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPA  159 (359)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (359)
                      +|+.            +.+.+.+.+++.++++.++.                                           +
T Consensus       194 ~~~~------------~~l~~~~~~~a~~i~~~~p~-------------------------------------------a  218 (275)
T d1dcia_         194 FPDK------------DVMLNAAFALAADISSKSPV-------------------------------------------A  218 (275)
T ss_dssp             ESSH------------HHHHHHHHHHHHHHHHSCHH-------------------------------------------H
T ss_pred             eehh------------hhhhhcccccccccccccHH-------------------------------------------H
Confidence            9972            45778888999999998773                                           2


Q ss_pred             HHHHHHHHHHhhccChhhHHHHHHHHhhhhhcChhhHHHHHhHhhhhhhhhcCC
Q psy9056         160 PLKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQTECKKNRL  213 (359)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~s~~~~~~~~af~~k~~~~~~~~  213 (359)
                      ...+|+.++++...+++++++.|.+.+..++.++|++||+++|++||+||+..+
T Consensus       219 ~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~d~~Egi~AfleKR~pk~~~~  272 (275)
T d1dcia_         219 VQGSKINLIYSRDHSVDESLDYMATWNMSMLQTQDIIKSVQAAMEKKDSKSITF  272 (275)
T ss_dssp             HHHHHHHHHHHHHSCHHHHHHHHHHHHHHHTSSHHHHHHHHHHHTTCCGGGCCC
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            224567777788889999999999999999999999999999999999999655

>d1uiya_ c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Enoyl-CoA hydratase (crotonase)
species: Thermus thermophilus [TaxId: 274]

Probab=99.96  E-value=3.5e-29  Score=228.10  Aligned_cols=151  Identities=21%  Similarity=0.203  Sum_probs=139.5

Q ss_pred             CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceec
Q psy9056           1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLV   80 (359)
Q Consensus         1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~   80 (359)
                      |+|+|||++|+++|||||++++  ++|++||+++|++| ++++.+|++++|..++++|++||++++++||+++||||+++
T Consensus       103 G~a~GgG~~lal~~D~ria~~~--a~~~~~e~~~g~~~-~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v~  179 (253)
T d1uiya_         103 GPAVAGGAGLALACDLVVMDEE--ARLGYTEVKIGFVA-ALVSVILVRAVGEKAAKDLLLTGRLVEAREAKALGLVNRIA  179 (253)
T ss_dssp             SCEETHHHHHHHTSSEEEEETT--CEEECCHHHHTCCC-HHHHHHHHHHSCHHHHHHHHHHCCEEEHHHHHHHTSCSEEE
T ss_pred             eEEehhhHHHHhhhhhhhhhhh--hHHhhhhccccccc-ccchhhhhcccCHHHHHHHhhcCcCCCHHHHHHhCCCcccc
Confidence            6899999999999999999998  99999999999877 56788999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccccccCCCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHhhCCCCCcH
Q psy9056          81 EPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAP  160 (359)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (359)
                      |+             +++.+.+.+++.++++.++.                                           +.
T Consensus       180 ~~-------------~~~~~~a~~~a~~~~~~~~~-------------------------------------------a~  203 (253)
T d1uiya_         180 PP-------------GKALEEAKALAEEVAKNAPT-------------------------------------------SL  203 (253)
T ss_dssp             CT-------------TCHHHHHHHHHHHHHHSCHH-------------------------------------------HH
T ss_pred             cc-------------cccchhHHHHHHhhcccchH-------------------------------------------HH
Confidence            98             78999999999999998873                                           23


Q ss_pred             HHHHHHHHHhhccChhhHHHHHHHHhhhhhcChhhHHHHHhHhhhhhhhh
Q psy9056         161 LKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQTECKK  210 (359)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~s~~~~~~~~af~~k~~~~~  210 (359)
                      ..+|+.++.....+++++++.|.+.+..++.|+|++||+++|++||+|+|
T Consensus       204 ~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~egi~af~eKR~P~f  253 (253)
T d1uiya_         204 RLTKELLLALPGMGLEDGFRLAALANAWVRETGDLAEGIRAFFEKRPPRF  253 (253)
T ss_dssp             HHHHHHHHHGGGSCHHHHHHHHHHHHHHGGGCHHHHHHHHHHHTTSCCCC
T ss_pred             HHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHhCCCCCCC
Confidence            35778888888899999999999999999999999999999999998865

>d1q52a_ c.14.1.3 (A:) Naphthoate synthase MenB {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Naphthoate synthase MenB
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.95  E-value=1.6e-28  Score=229.09  Aligned_cols=156  Identities=14%  Similarity=0.157  Sum_probs=135.0

Q ss_pred             CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceec
Q psy9056           1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLV   80 (359)
Q Consensus         1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~   80 (359)
                      |+|+|||++|+++||+||++++ .++|++||+++|++|+++++.+|++++|..+++++++||++++++||+++||||+++
T Consensus       139 G~a~GGG~~lal~~D~~ia~~~-~~~f~~pe~~~Gl~p~~~~~~~L~r~iG~~~a~~llltg~~~~a~eA~~~Glv~~vv  217 (297)
T d1q52a_         139 GWAAGGGHSLHVVCDLTLASRE-YARFKQTDADVGSFDGGYGSAYLARQVGQKFAREIFFLGRTYTAEQMHQMGAVNAVA  217 (297)
T ss_dssp             SEEETHHHHHHHHSSEEEEETT-TCEEECCGGGGTCCCCSTTTHHHHHHHCHHHHHHHHHHCCEECHHHHHHHTSCSEEE
T ss_pred             ceeeeccchhhhhhhccccccc-cccceeeeeccccccccccccccccccCccceeeccccccccchHhhhhhccccccC
Confidence            6899999999999999999875 258999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccccccCCCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHhhCCCCCcH
Q psy9056          81 EPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAP  160 (359)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (359)
                      |+             +++++.+.++++++++.|+...                                           
T Consensus       218 ~~-------------~el~~~~~~~a~~l~~~~~~a~-------------------------------------------  241 (297)
T d1q52a_         218 EH-------------AELETVGLQWAAEINAKSPQAQ-------------------------------------------  241 (297)
T ss_dssp             CG-------------GGHHHHHHHHHHHHHTSCHHHH-------------------------------------------
T ss_pred             ch-------------HHhhHHHHHHhhhhccCCHHHH-------------------------------------------
Confidence            98             8899999999999999877322                                           


Q ss_pred             HHHHHHHHHhhccChhhHHHHHHHHhhhhhcChhhHHHHHhHhhhhhhhhcCCC
Q psy9056         161 LKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQTECKKNRLG  214 (359)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~s~~~~~~~~af~~k~~~~~~~~~  214 (359)
                      ..+|+.++.. ..++.+....|.+.+..++.|+|++||+++|++||+|+|.+++
T Consensus       242 ~~~K~~~~~~-~~~~~~~~~~~~~~~~~~~~s~d~~Egv~AF~eKR~P~f~~~~  294 (297)
T d1q52a_         242 RMLKFAFNLL-DDGLVGQQLFAGEATRLAYMTDEAVEGRDAFLQKRPPDWSPFP  294 (297)
T ss_dssp             HHHHHHHHHT-TTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTTSCCCCTTSC
T ss_pred             HHHHHHHHHh-hcChHHHHHHHHHHHHHHhcCHHHHHHHHHHhCCCCCCCCCCC
Confidence            1334444432 3445555566778888999999999999999999999997654

>d1ef8a_ c.14.1.3 (A:) Methylmalonyl CoA decarboxylase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Methylmalonyl CoA decarboxylase
species: Escherichia coli [TaxId: 562]

Probab=99.95  E-value=1.5e-28  Score=225.17  Aligned_cols=153  Identities=16%  Similarity=0.134  Sum_probs=134.8

Q ss_pred             CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceec
Q psy9056           1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLV   80 (359)
Q Consensus         1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~   80 (359)
                      |+|+|||++|+++||+||++++  ++|++||+++|++|++++++++++.+|..++++++++|+.|+++||+++||||+++
T Consensus       105 G~a~GgG~~lal~cD~ria~~~--a~~~~pe~~~Gl~~~~~~~~~l~r~~g~~~a~~~~l~g~~~~a~eA~~~Glv~~vv  182 (261)
T d1ef8a_         105 GSVWGGAFEMIMSSDLIIAAST--STFSMTPVNLGVPYNLVGIHNLTRDAGFHIVKELIFTASPITAQRALAVGILNHVV  182 (261)
T ss_dssp             SEEETHHHHHHHHSSEEEEETT--CEEECCHHHHTCCCCHHHHHTTSSSSCHHHHHHHHHHCCCEEHHHHHHTTSCSEEE
T ss_pred             ccccchhhhhhhhhhhhhhhHh--HHHhhhhcccccccccccccccccccCccccccccccCceEcHHHHHHcCCcceee
Confidence            6899999999999999999998  99999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccccccCCCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHhhCCCCCcH
Q psy9056          81 EPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAP  160 (359)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (359)
                      |+             +++.+.+.++++++++.++.                                           +.
T Consensus       183 ~~-------------~~~~~~a~~~a~~la~~~~~-------------------------------------------a~  206 (261)
T d1ef8a_         183 EV-------------EELEDFTLQMAHHISEKAPL-------------------------------------------AI  206 (261)
T ss_dssp             CH-------------HHHHHHHHHHHHHHTTSCHH-------------------------------------------HH
T ss_pred             ec-------------hhhhhhhHHHHHHHHhcCcH-------------------------------------------HH
Confidence            98             88999999999999988762                                           22


Q ss_pred             HHHHHHHHHhhccChhh--HHHHHHHHhhhhhcChhhHHHHHhHhhhhhhhhc
Q psy9056         161 LKILDVVRTGIEKGPSA--GYEAEAEGFSQLAMTPQSKGLMGLFRAQTECKKN  211 (359)
Q Consensus       161 ~~~~~~~~~~~~~~~~~--~~~~e~~~~~~~~~s~~~~~~~~af~~k~~~~~~  211 (359)
                      ..+|+.++.........  .++.+...+..++.|+|++||+++|++||+|+|.
T Consensus       207 ~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~s~D~~Egi~AfleKR~P~f~  259 (261)
T d1ef8a_         207 AVIKEELRVLGEAHTMNSDEFERIQGMRRAVYDSEDYQEGMNAFLEKRKPNFV  259 (261)
T ss_dssp             HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHTSHHHHHHHHHHHTTSCCCCC
T ss_pred             HHHHHHHHHHHhcCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHhCCCCCcCC
Confidence            24556666665554444  4455566788899999999999999999998874

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=6.6e-28  Score=210.92  Aligned_cols=142  Identities=30%  Similarity=0.469  Sum_probs=131.1

Q ss_pred             CCccEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCCh-----HHHHhhhccccccc
Q psy9056         218 TPVKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSA-----LDRDRYLASLVGTL  292 (359)
Q Consensus       218 ~~~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~-----~~~~~~~~~i~~~~  292 (359)
                      |.|+||+|||+|.||++||..++++|++|++||++++.++.+.+.+++.++...+.+....     ......+.++.+++
T Consensus         2 ~~IkkvaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~~l~~a~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~   81 (192)
T d1f0ya2           2 IIVKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATST   81 (192)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEEES
T ss_pred             ceeEEEEEECcCHHHHHHHHHHHhCCCcEEEEECChHHHHHHHhhHHHHHHHHHHhhhhccchhhHHHHHHHHhhccccc
Confidence            6789999999999999999999999999999999999999999999999988888777642     33445667888888


Q ss_pred             Cc-CCCCCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCcHHHHHhhcCCCCcEEeecCC
Q psy9056         293 SY-DPFKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPITKIAAASKRPDKVRNMGRI  359 (359)
Q Consensus       293 ~~-~~l~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~rvig~h~~  359 (359)
                      |+ +++++||+||||+||+.++|+++|++|.+++++++||+||||++++++++..+.+|+|++|+|||
T Consensus        82 d~~~a~~~ad~ViEav~E~l~~K~~v~~~l~~~~~~~~ilasnTS~l~i~~la~~~~~p~r~ig~Hff  149 (192)
T d1f0ya2          82 DAASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTSSLQITSIANATTRQDRFAGLHFF  149 (192)
T ss_dssp             CHHHHTTSCSEEEECCCSCHHHHHHHHHHHTTTSCTTCEEEECCSSSCHHHHHTTSSCGGGEEEEEEC
T ss_pred             hhHhhhcccceehhhcccchhHHHHHHHHHhhhcccCceeeccCcccccchhhhhccCHhHEEeeccc
Confidence            87 56999999999999999999999999999999999999999999999999999999999999997

>d2f6qa1 c.14.1.3 (A:108-352) Peroxisomal 3,2-trans-enoyl-CoA isomerase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Peroxisomal 3,2-trans-enoyl-CoA isomerase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=3.4e-26  Score=207.47  Aligned_cols=139  Identities=16%  Similarity=0.097  Sum_probs=128.8

Q ss_pred             CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceec
Q psy9056           1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLV   80 (359)
Q Consensus         1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~   80 (359)
                      |+|+|||++|+++|||||++++  ++|++||+++|++|++|++++|++++|..++++++++|++++++||+++||||+++
T Consensus       107 G~a~GgG~~la~~~D~~ia~~~--a~f~~pe~~~G~~p~~g~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~vv  184 (245)
T d2f6qa1         107 GPAVGISVTLLGLFDAVYASDR--ATFHTPFSHLGQSPEGCSSYTFPKIMSPAKATEMLIFGKKLTAGEACAQGLVTEVF  184 (245)
T ss_dssp             SCEETHHHHGGGGCSEEEEETT--CEEECCTGGGTCCCCTTHHHHHHHHHCHHHHHHHHTTCCCEEHHHHHHTTSCSEEE
T ss_pred             Cccccccccchhhhhhhhhhcc--CeEecccccCCCCccccchhhcccccccchhhhhcccccccccccccccccccccC
Confidence            6899999999999999999998  99999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccccccCCCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHhhCCCCCcH
Q psy9056          81 EPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAP  160 (359)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (359)
                      |+             +++.+++.++++++++.|+.                                           +.
T Consensus       185 ~~-------------~~l~~~a~~~a~~la~~~~~-------------------------------------------a~  208 (245)
T d2f6qa1         185 PD-------------STFQKEVWTRLKAFAKLPPN-------------------------------------------AL  208 (245)
T ss_dssp             CT-------------TTHHHHHHHHHHHHTTSCHH-------------------------------------------HH
T ss_pred             Cc-------------chHHHHHHHHHHHHHcCCHH-------------------------------------------HH
Confidence            98             88999999999999998773                                           22


Q ss_pred             HHHHHHHHHhhccChhhHHHHHHHHhhhhhcChhhHH
Q psy9056         161 LKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKG  197 (359)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~s~~~~~  197 (359)
                      ..+|++++......+++.++.|.+.+.+++.|+|+++
T Consensus       209 ~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~d~~n  245 (245)
T d2f6qa1         209 RISKEVIRKREREKLHAVNAEECNVLQGRWLSDECTN  245 (245)
T ss_dssp             HHHHHHHHGGGHHHHHHHHHHHHHHHHHHHTSHHHHC
T ss_pred             HHHHHHHHhhhhcCHHHHHHHHHHHHHHHhcCcccCC
Confidence            3566778888788899999999999999999999863

>d1sg4a1 c.14.1.3 (A:2-250) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Human (Homo sapiens), mitochondrial [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase)
species: Human (Homo sapiens), mitochondrial [TaxId: 9606]

Probab=99.91  E-value=6.4e-25  Score=199.48  Aligned_cols=142  Identities=19%  Similarity=0.210  Sum_probs=129.0

Q ss_pred             CCCCchHHHHHHhcCEEEEecCCceEE--eccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcce
Q psy9056           1 MFAEPSLATVALACHYRIVVKDKKTGL--GLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQ   78 (359)
Q Consensus         1 ~~a~GgG~~lalacD~ria~~~~~~~~--~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~   78 (359)
                      |.|.|||++|+++|||||++++  ++|  ++||+++|++|++|++++|++++|..++++++++|+++++++|+++||||+
T Consensus       105 G~a~GgG~~lal~~D~~ia~~~--a~f~~~~pe~~~Gl~p~~g~~~~l~~~iG~~~a~~lll~g~~~~a~~A~~~Glv~~  182 (249)
T d1sg4a1         105 GACPAGGCLVALTCDYRILADN--PRYCIGLNETQLGIIAPFWLKDTLENTIGHRAAERALQLGLLFPPAEALQVGIVDQ  182 (249)
T ss_dssp             EEBCHHHHHHHTTSSEEEEECC--TTCCBSCCGGGGTCCCCHHHHHHHHHHHCHHHHHHHHHHTCCBCHHHHHHHTSSSE
T ss_pred             ccccccccccccccccceeecc--ccccccccccccccccccccccccccccccccccccccccccccHHHHHhhccccc
Confidence            5799999999999999999998  655  799999999999999999999999999999999999999999999999999


Q ss_pred             ecCCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccccccCCCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHhhCCCCC
Q psy9056          79 LVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYP  158 (359)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (359)
                      ++|+             +++.+.+.++++++++.|+..                                          
T Consensus       183 v~~~-------------~~l~~~a~~~a~~l~~~~~~a------------------------------------------  207 (249)
T d1sg4a1         183 VVPE-------------EQVQSTALSAIAQWMAIPDHA------------------------------------------  207 (249)
T ss_dssp             EECG-------------GGHHHHHHHHHHHHHTSCHHH------------------------------------------
T ss_pred             cCCh-------------HHHHHHHHHHHHHHHcCCHHH------------------------------------------
Confidence            9998             889999999999999887632                                          


Q ss_pred             cHHHHHHHHHHhhccChhhHHHHHHHHhhhhhcChhhHHHHH
Q psy9056         159 APLKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMG  200 (359)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~s~~~~~~~~  200 (359)
                       ...+|+.++......+.+.++.|.+.+..++.+++++++++
T Consensus       208 -~~~~K~~~~~~~~~~l~~~~~~e~~~~~~~~~~e~~~~~le  248 (249)
T d1sg4a1         208 -RQLTKAMMRKATASRLVTQRDADVQNFVSFISKDSIQKSLQ  248 (249)
T ss_dssp             -HHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHTSHHHHHHHT
T ss_pred             -HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhCCHHHHHhcC
Confidence             22456777777778889999999999999999999999875

>d2a7ka1 c.14.1.3 (A:1-230) Carbapenem biosynthes protein CarB {Pectobacterium carotovorum [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Carbapenem biosynthes protein CarB
species: Pectobacterium carotovorum [TaxId: 554]

Probab=99.88  E-value=2.3e-23  Score=186.87  Aligned_cols=98  Identities=20%  Similarity=0.232  Sum_probs=93.3

Q ss_pred             CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceec
Q psy9056           1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLV   80 (359)
Q Consensus         1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~   80 (359)
                      |+|+|||++|+++||||||+++  ++|++||+++|++|++|+ .+|++++|..+++++++||++++++||+++||||+++
T Consensus       103 G~a~GgG~~lal~~D~~ia~~~--a~f~~pe~~~G~~p~~g~-~~l~~~iG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv  179 (230)
T d2a7ka1         103 GYAIGMGFQFALMFDQRLMAST--ANFVMPELKHGIGCSVGA-AILGFTHGFSTMQEIIYQCQSLDAPRCVDYRLVNQVV  179 (230)
T ss_dssp             SEEETHHHHHHTTSSEEEEETT--CEEECCGGGGTCCCHHHH-HHHHHHHCHHHHHHHHHHCCCBCHHHHHHHTCCSEEE
T ss_pred             cccccccccchhccchhhcccc--chhhhccccccccccccc-cccccccccccccccccccccchHHHHHHhhhcccCC
Confidence            6799999999999999999998  999999999999988765 5799999999999999999999999999999999999


Q ss_pred             CCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCcc
Q psy9056          81 EPLGPGLNHPEERTMEYLEEVAVNTASQLASGKL  114 (359)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~  114 (359)
                      |+             +++.+.+.++++++++.|+
T Consensus       180 ~~-------------~~l~~~a~~~a~~ia~~~~  200 (230)
T d2a7ka1         180 ES-------------SALLDAAITQAHVMASYPA  200 (230)
T ss_dssp             CH-------------HHHHHHHHHHHHHHHTSCH
T ss_pred             Ch-------------HHHHHHHHHHHHHHHcCCH
Confidence            98             9999999999999999887

>d1pjha_ c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.85  E-value=7e-22  Score=180.83  Aligned_cols=81  Identities=22%  Similarity=0.196  Sum_probs=77.3

Q ss_pred             CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceec
Q psy9056           1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLV   80 (359)
Q Consensus         1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~   80 (359)
                      |+|+|||++|+++||||||+++ +++|++||+++|++|++|++++|++++|..++++|++||++++++||+++||||+++
T Consensus       117 G~a~GgG~~lal~~D~~ia~~~-~~~~~~pe~~lGl~p~~g~~~~l~r~~g~~~a~~llltg~~~~a~eA~~~Glv~~v~  195 (266)
T d1pjha_         117 GPAIGLSAALVALCDIVYSIND-KVYLLYPFANLGLITEGGTTVSLPLKFGTNTTYECLMFNKPFKYDIMCENGFISKNF  195 (266)
T ss_dssp             SCEEHHHHHHHHHSSEEEESST-TCEEECCHHHHTCCCCTTHHHHHHHHHCHHHHHHHHHTTCCEEHHHHHHTTCCSEEC
T ss_pred             cccccccccchhccchhhhhhc-cccccccccccccccccccccccccccccchhhhhhccCCcCCHHHHHHCCCEeEee
Confidence            6899999999999999999754 378999999999999999999999999999999999999999999999999999999


Q ss_pred             CC
Q psy9056          81 EP   82 (359)
Q Consensus        81 ~~   82 (359)
                      ++
T Consensus       196 ~~  197 (266)
T d1pjha_         196 NM  197 (266)
T ss_dssp             CC
T ss_pred             Cc
Confidence            86

>d1szoa_ c.14.1.3 (A:) 6-oxo camphor hydrolase {Rhodococcus erythropolis [TaxId: 1833]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: 6-oxo camphor hydrolase
species: Rhodococcus erythropolis [TaxId: 1833]

Probab=99.82  E-value=1.2e-20  Score=171.04  Aligned_cols=97  Identities=20%  Similarity=0.253  Sum_probs=91.9

Q ss_pred             CchHHHHHHhcCEEEEecCCceEEe-ccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceecCC
Q psy9056           4 EPSLATVALACHYRIVVKDKKTGLG-LPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEP   82 (359)
Q Consensus         4 ~GgG~~lalacD~ria~~~~~~~~~-~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~~~   82 (359)
                      .|||++|+++||+||++++  ++|. +||+++|++|++|++++|++++|..++++|++||++++++||+++||||+++|+
T Consensus       116 ~~GG~~l~l~~D~ria~~~--a~f~~~pe~~~g~~p~~g~~~~l~r~ig~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~  193 (249)
T d1szoa_         116 VTNAPEIPVMSDIVLAAES--ATFQDGPHFPSGIVPGDGAHVVWPHVLGSNRGRYFLLTGQELDARTALDYGAVNEVLSE  193 (249)
T ss_dssp             BCSSTHHHHTSSEEEEETT--CEEECTTSGGGTCCCTTTHHHHHHHHHCHHHHHHHHHTTCEEEHHHHHHHTSCSEEECH
T ss_pred             cccccccccccccccccCC--cEEEEeeccccccccccccccccccccCccceeeecccCCCCCHHHHHHhCCcCcccCH
Confidence            3668899999999999998  9885 799999999999999999999999999999999999999999999999999998


Q ss_pred             CCCCCCCcchhhHHHHHHHHHHHHHHHhcCccc
Q psy9056          83 LGPGLNHPEERTMEYLEEVAVNTASQLASGKLK  115 (359)
Q Consensus        83 ~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~  115 (359)
                                   +++.+.+.++++++++.|+.
T Consensus       194 -------------~~l~~~a~~~a~~la~~~~~  213 (249)
T d1szoa_         194 -------------QELLPRAWELARGIAEKPLL  213 (249)
T ss_dssp             -------------HHHHHHHHHHHHHHHTSCHH
T ss_pred             -------------HHHHHHHHHHHHHHHcCCHH
Confidence                         89999999999999998874

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=99.55  E-value=7.9e-15  Score=123.61  Aligned_cols=113  Identities=14%  Similarity=0.148  Sum_probs=83.3

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcCCCCCc
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPFKNA  300 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~a  300 (359)
                      +||+|||+|+||+++|..|.++||+|++||++++.++.+.+           .+.++           ...++.+.++++
T Consensus         1 MkI~iIG~G~mG~~lA~~l~~~g~~V~~~d~~~~~~~~a~~-----------~~~~~-----------~~~~~~~~~~~~   58 (165)
T d2f1ka2           1 MKIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTCEKAVE-----------RQLVD-----------EAGQDLSLLQTA   58 (165)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHH-----------TTSCS-----------EEESCGGGGTTC
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCCEEEEEECCchHHHHHHH-----------hhccc-----------eeeeeccccccc
Confidence            47999999999999999999999999999999988776432           11110           234455788999


Q ss_pred             cEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCcHHHHHhhcCCCCcEEeecC
Q psy9056         301 DMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPITKIAAASKRPDKVRNMGR  358 (359)
Q Consensus       301 D~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~rvig~h~  358 (359)
                      |+||+|+|.+.  ...+++++.++++++++|++.++.. ............++++.|+
T Consensus        59 DiIilavp~~~--~~~vl~~l~~~l~~~~iv~~~~s~~-~~~~~~~~~~~~~~~~~h~  113 (165)
T d2f1ka2          59 KIIFLCTPIQL--ILPTLEKLIPHLSPTAIVTDVASVK-TAIAEPASQLWSGFIGGHP  113 (165)
T ss_dssp             SEEEECSCHHH--HHHHHHHHGGGSCTTCEEEECCSCC-HHHHHHHHHHSTTCEEEEE
T ss_pred             ccccccCcHhh--hhhhhhhhhhhcccccceeeccccc-hHHHHHHHHhhccccccee
Confidence            99999998554  7789999999999999998765542 2222221122235777775

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=99.48  E-value=4.4e-14  Score=119.46  Aligned_cols=113  Identities=14%  Similarity=0.182  Sum_probs=84.4

Q ss_pred             ccEEEEECCCcchHHHHHHHHHCCC--eeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc--C
Q psy9056         220 VKTVAVLGAGLMGAGIAHVTVDKGY--NTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY--D  295 (359)
Q Consensus       220 ~~kI~IIG~G~mG~~iA~~l~~~G~--~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~--~  295 (359)
                      |++|+|||+|.||+++|..|.++|+  +|+.||++++.++.+.+           .+..+           ...++.  .
T Consensus         1 Mk~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~-----------~~~~~-----------~~~~~~~~~   58 (171)
T d2g5ca2           1 MQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVD-----------LGIID-----------EGTTSIAKV   58 (171)
T ss_dssp             CCEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHH-----------TTSCS-----------EEESCGGGG
T ss_pred             CCEEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHH-----------hhcch-----------hhhhhhhhh
Confidence            6799999999999999999999996  78889999998776543           11110           122222  2


Q ss_pred             CCCCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCc--HHHHHhhcCCCCcEEeecC
Q psy9056         296 PFKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIP--ITKIAAASKRPDKVRNMGR  358 (359)
Q Consensus       296 ~l~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~--~~~l~~~~~~~~rvig~h~  358 (359)
                      ...++|+||+|+|.+.  ...+++++.++++++++|++.++...  .+.+...+  +.++++.|+
T Consensus        59 ~~~~~dlIila~p~~~--~~~vl~~l~~~~~~~~ii~d~~s~k~~~~~~~~~~~--~~~~i~~hP  119 (171)
T d2g5ca2          59 EDFSPDFVMLSSPVRT--FREIAKKLSYILSEDATVTDQGSVKGKLVYDLENIL--GKRFVGGHP  119 (171)
T ss_dssp             GGTCCSEEEECSCHHH--HHHHHHHHHHHSCTTCEEEECCSCCTHHHHHHHHHH--GGGEECEEE
T ss_pred             hccccccccccCCchh--hhhhhhhhhccccccccccccccccHHHHHHHHHhh--ccccccccc
Confidence            3468999999998554  66889999999999999988777543  23454444  357999996

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=99.45  E-value=2.1e-13  Score=113.25  Aligned_cols=109  Identities=17%  Similarity=0.174  Sum_probs=85.8

Q ss_pred             cEEEEECCCcchHHHHHHHHHCC-CeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcCCCCC
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKG-YNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPFKN  299 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G-~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~  299 (359)
                      +||+|||+|+||.+|+..|.++| ++|++||+++++++...+.                       ..+...++.+++.+
T Consensus         1 MkI~fIG~G~MG~ai~~~l~~~~~~~i~v~~r~~~~~~~l~~~-----------------------~~~~~~~~~~~v~~   57 (152)
T d1yqga2           1 MNVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGAEKRERLEKE-----------------------LGVETSATLPELHS   57 (152)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSCEEEEECSSHHHHHHHHHH-----------------------TCCEEESSCCCCCT
T ss_pred             CEEEEEcCcHHHHHHHHHHHHCCCCcEEEEeCChhHHHHhhhh-----------------------cccccccccccccc
Confidence            48999999999999999998887 8999999999987764321                       02455667778899


Q ss_pred             ccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCcHHHHHhhcCCCCcEEeec
Q psy9056         300 ADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPITKIAAASKRPDKVRNMG  357 (359)
Q Consensus       300 aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~rvig~h  357 (359)
                      +|+||+|++  +....++++++   .+.+.+++|..++++++.+.+.++...+++-.+
T Consensus        58 ~Div~lavk--P~~~~~v~~~l---~~~~~~viS~~ag~~~~~l~~~l~~~~~iir~m  110 (152)
T d1yqga2          58 DDVLILAVK--PQDMEAACKNI---RTNGALVLSVAAGLSVGTLSRYLGGTRRIVRVM  110 (152)
T ss_dssp             TSEEEECSC--HHHHHHHHTTC---CCTTCEEEECCTTCCHHHHHHHTTSCCCEEEEE
T ss_pred             cceEEEecC--HHHHHHhHHHH---hhcccEEeecccCCCHHHHHHHhCcCcceEeec
Confidence            999999996  44455665554   345789999999999999999997666666543

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.40  E-value=2.7e-13  Score=113.75  Aligned_cols=104  Identities=20%  Similarity=0.313  Sum_probs=78.0

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CCCCC
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DPFKN  299 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~l~~  299 (359)
                      +||||||+|+||.+||..|+++||+|++||+++++.+...+           .             .....++. +.+++
T Consensus         1 MkIgiIGlG~MG~~~A~~L~~~G~~V~~~d~~~~~~~~~~~-----------~-------------~~~~~~~~~e~~~~   56 (161)
T d1vpda2           1 MKVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPEAIADVIA-----------A-------------GAETASTAKAIAEQ   56 (161)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHH-----------T-------------TCEECSSHHHHHHH
T ss_pred             CEEEEEehhHHHHHHHHHHHHCCCeEEEEeCCcchhHHHHH-----------h-------------hhhhcccHHHHHhC
Confidence            47999999999999999999999999999999998766432           1             12233344 56789


Q ss_pred             ccEEEEcccCCHHHHHHHH--HHHHHhCCCCcEEEEcCCCCcHH--HHHhhcC
Q psy9056         300 ADMVIEAVFEDINIKHQVI--KEIEAVVPPHCVVATNTSAIPIT--KIAAASK  348 (359)
Q Consensus       300 aD~Vi~avp~~~~~k~~v~--~~l~~~~~~~~ii~s~ts~~~~~--~l~~~~~  348 (359)
                      +|+||.|+|++..+..-++  ..+...+.++++|++.++..+-.  ++++.+.
T Consensus        57 ~d~ii~~v~~~~~v~~v~~~~~~~~~~~~~g~iiid~sT~~p~~~~~~~~~~~  109 (161)
T d1vpda2          57 CDVIITMLPNSPHVKEVALGENGIIEGAKPGTVLIDMSSIAPLASREISDALK  109 (161)
T ss_dssp             CSEEEECCSSHHHHHHHHHSTTCHHHHCCTTCEEEECSCCCHHHHHHHHHHHH
T ss_pred             CCeEEEEcCCHHHHHHHHhCCcchhhccCCCCEEEECCCCCHHHHHHHHHHHH
Confidence            9999999998776544444  45888889999998777655432  4444443

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=99.40  E-value=4.1e-14  Score=122.06  Aligned_cols=110  Identities=14%  Similarity=0.104  Sum_probs=82.6

Q ss_pred             CCccEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CC
Q psy9056         218 TPVKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DP  296 (359)
Q Consensus       218 ~~~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~  296 (359)
                      ++|+||+|||+|.||+++|..|+++|++|++|+++++.++.+...-++.  .+...-        ...+++.+++++ ++
T Consensus         5 ~~m~KI~ViGaG~wGtAlA~~La~~g~~V~l~~r~~~~~~~i~~~~~n~--~yl~~~--------~l~~~i~~t~~l~~a   74 (189)
T d1n1ea2           5 LYLNKAVVFGSGAFGTALAMVLSKKCREVCVWHMNEEEVRLVNEKRENV--LFLKGV--------QLASNITFTSDVEKA   74 (189)
T ss_dssp             CCEEEEEEECCSHHHHHHHHHHHTTEEEEEEECSCHHHHHHHHHHTBCT--TTSTTC--------BCCTTEEEESCHHHH
T ss_pred             ceeceEEEECCCHHHHHHHHHHHHcCCeEEEEEecHHHHHHHhhccccc--cccccc--------ccccccccchhhhhc
Confidence            6789999999999999999999999999999999999877654321110  011111        123578888888 56


Q ss_pred             CCCccEEEEcccCCHHHHHHHHHHHHHh-----CCCCcEEEEcCCCCc
Q psy9056         297 FKNADMVIEAVFEDINIKHQVIKEIEAV-----VPPHCVVATNTSAIP  339 (359)
Q Consensus       297 l~~aD~Vi~avp~~~~~k~~v~~~l~~~-----~~~~~ii~s~ts~~~  339 (359)
                      ++++|+||+|+|.+.  .+.+++++.++     .+++.+|++.+.|+.
T Consensus        75 ~~~ad~iiiavPs~~--~~~~~~~~~~~~~~~~~~~~~~ii~~tKGie  120 (189)
T d1n1ea2          75 YNGAEIILFVIPTQF--LRGFFEKSGGNLIAYAKEKQVPVLVCTKGIE  120 (189)
T ss_dssp             HTTCSCEEECSCHHH--HHHHHHHHCHHHHHHHHHHTCCEEECCCSCC
T ss_pred             cCCCCEEEEcCcHHH--HHHHHHHHHhhhhhhhccCCcEEEEEECCCc
Confidence            899999999998655  77888887653     356677778877764

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.39  E-value=2.9e-13  Score=112.50  Aligned_cols=105  Identities=15%  Similarity=0.141  Sum_probs=81.7

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CCCCC
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DPFKN  299 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~l~~  299 (359)
                      +||+|||+|+||++++..|.++|++|++|++++++.++..+.+                       .+..+.+. +.+.+
T Consensus         1 MkIg~IG~G~mG~al~~~l~~~~~~i~v~~r~~~~~~~l~~~~-----------------------g~~~~~~~~~~~~~   57 (152)
T d2ahra2           1 MKIGIIGVGKMASAIIKGLKQTPHELIISGSSLERSKEIAEQL-----------------------ALPYAMSHQDLIDQ   57 (152)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTSSCEEEEECSSHHHHHHHHHHH-----------------------TCCBCSSHHHHHHT
T ss_pred             CEEEEEeccHHHHHHHHHHHhCCCeEEEEcChHHhHHhhcccc-----------------------ceeeechhhhhhhc
Confidence            4799999999999999999999999999999998876543211                       13344454 55789


Q ss_pred             ccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCcHHHHHhhcCCCCcEE
Q psy9056         300 ADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPITKIAAASKRPDKVR  354 (359)
Q Consensus       300 aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~rvi  354 (359)
                      +|+||+|++.+.  ..++    .+.+.++++|+|..++++++++.+.++...+++
T Consensus        58 ~dvIilavkp~~--~~~v----l~~l~~~~~iis~~agi~~~~l~~~l~~~~~iv  106 (152)
T d2ahra2          58 VDLVILGIKPQL--FETV----LKPLHFKQPIISMAAGISLQRLATFVGQDLPLL  106 (152)
T ss_dssp             CSEEEECSCGGG--HHHH----HTTSCCCSCEEECCTTCCHHHHHHHHCTTSCEE
T ss_pred             cceeeeecchHh--HHHH----hhhcccceeEecccccccHHHHHhhhcccccch
Confidence            999999996432  4444    445677888999999999999999887665554

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=99.36  E-value=7.2e-13  Score=112.63  Aligned_cols=104  Identities=18%  Similarity=0.063  Sum_probs=76.3

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CCCCC
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DPFKN  299 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~l~~  299 (359)
                      +||+|||+|+||.++|..|+++||+|.+||+++++++...+......  .....       .........+++. +.+.+
T Consensus         2 k~iaIiGaG~~G~~~A~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~-------~~~~~~~~~~~~~~e~~~~   72 (184)
T d1bg6a2           2 KTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRGAIIA--EGPGL-------AGTAHPDLLTSDIGLAVKD   72 (184)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHTSEEE--ESSSC-------CEEECCSEEESCHHHHHTT
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCCch--hhhhh-------hhhhhhhhhhhhhHhHhcC
Confidence            69999999999999999999999999999999998877554211000  00000       0000122334555 56899


Q ss_pred             ccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcC
Q psy9056         300 ADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNT  335 (359)
Q Consensus       300 aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~t  335 (359)
                      +|+||+|+|.+.  .+.+++++.+++.++++|+...
T Consensus        73 aD~iii~v~~~~--~~~~~~~i~~~l~~~~~iv~~~  106 (184)
T d1bg6a2          73 ADVILIVVPAIH--HASIAANIASYISEGQLIILNP  106 (184)
T ss_dssp             CSEEEECSCGGG--HHHHHHHHGGGCCTTCEEEESS
T ss_pred             CCEEEEEEchhH--HHHHHHHhhhccCCCCEEEEeC
Confidence            999999999887  6799999999999999876543

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.33  E-value=2.3e-12  Score=108.04  Aligned_cols=103  Identities=25%  Similarity=0.320  Sum_probs=75.9

Q ss_pred             ccEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CCCC
Q psy9056         220 VKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DPFK  298 (359)
Q Consensus       220 ~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~l~  298 (359)
                      |+||+|||.|.||.+||..|.++||+|.+||+++++.+....           .             ......+. +.+.
T Consensus         1 M~kIg~IGlG~MG~~iA~~L~~~g~~v~~~d~~~~~~~~~~~-----------~-------------~~~~~~~~~e~~~   56 (162)
T d3cuma2           1 MKQIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQSAVDGLVA-----------A-------------GASAARSARDAVQ   56 (162)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHHTTCEEEEECSSHHHHHHHHH-----------T-------------TCEECSSHHHHHT
T ss_pred             CCEEEEEEEHHHHHHHHHHHHHCCCeEEEEECchhhhhhhhh-----------h-------------hccccchhhhhcc
Confidence            689999999999999999999999999999999988665432           1             11222233 5678


Q ss_pred             CccEEEEcccCCHHHHHHHHH---HHHHhCCCCcEEEEcCCCCcH--HHHHhhc
Q psy9056         299 NADMVIEAVFEDINIKHQVIK---EIEAVVPPHCVVATNTSAIPI--TKIAAAS  347 (359)
Q Consensus       299 ~aD~Vi~avp~~~~~k~~v~~---~l~~~~~~~~ii~s~ts~~~~--~~l~~~~  347 (359)
                      .+|+|+.|+|.+... +.++.   .+...+.++.+|+..++..|-  .++.+.+
T Consensus        57 ~~diii~~v~~~~~~-~~v~~~~~~~~~~l~~g~iiid~st~~p~~~~~~~~~~  109 (162)
T d3cuma2          57 GADVVISMLPASQHV-EGLYLDDDGLLAHIAPGTLVLECSTIAPTSARKIHAAA  109 (162)
T ss_dssp             SCSEEEECCSCHHHH-HHHHHSTTCHHHHSCTTCEEEECSCCCHHHHHHHHHHH
T ss_pred             ccCeeeecccchhhH-HHHHhccccccccCCCCCEEEECCCCCHHHHHHHHHHH
Confidence            999999999977654 45553   367778888988876665442  2444444

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=99.30  E-value=2.5e-12  Score=106.50  Aligned_cols=103  Identities=19%  Similarity=0.265  Sum_probs=81.3

Q ss_pred             CCCCccEEEEEC-CCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc
Q psy9056         216 PQTPVKTVAVLG-AGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY  294 (359)
Q Consensus       216 ~~~~~~kI~IIG-~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~  294 (359)
                      ....|+||+||| .|.||.+||..|.++||+|.+||++++....                                    
T Consensus         5 ~~~~~~kI~iIGg~G~mG~~la~~L~~~G~~V~~~d~~~~~~~~------------------------------------   48 (152)
T d2pv7a2           5 INSDIHKIVIVGGYGKLGGLFARYLRASGYPISILDREDWAVAE------------------------------------   48 (152)
T ss_dssp             SCTTCCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCGGGHH------------------------------------
T ss_pred             cCCCCCeEEEEcCCCHHHHHHHHHHHHcCCCcEecccccccccc------------------------------------
Confidence            346789999999 8999999999999999999999998753211                                    


Q ss_pred             CCCCCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCcH--HHHHhhcCCCCcEEeecC
Q psy9056         295 DPFKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPI--TKIAAASKRPDKVRNMGR  358 (359)
Q Consensus       295 ~~l~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~--~~l~~~~~~~~rvig~h~  358 (359)
                      +.+.++|+++.++|...  ...++.++.++++++++|++.+|..+.  ..+.+..  +.++++.|+
T Consensus        49 ~~~~~~~~v~~~~~~~~--~~~v~~~~~~~~~~~~iiiD~~Svk~~~~~~~~~~~--~~~~v~~hP  110 (152)
T d2pv7a2          49 SILANADVVIVSVPINL--TLETIERLKPYLTENMLLADLTSVKREPLAKMLEVH--TGAVLGLHP  110 (152)
T ss_dssp             HHHTTCSEEEECSCGGG--HHHHHHHHGGGCCTTSEEEECCSCCHHHHHHHHHHC--SSEEEEEEE
T ss_pred             hhhhhccccccccchhh--heeeeecccccccCCceEEEecccCHHHHHHHHHHc--cCCEEEecc
Confidence            12578899999998776  558899999999999999877764332  3444433  457999996

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=99.24  E-value=1.2e-11  Score=101.72  Aligned_cols=121  Identities=15%  Similarity=0.175  Sum_probs=85.5

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCC--eeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcCCCC
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGY--NTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPFK  298 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~--~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~  298 (359)
                      +||+|||+|.+|.++|..++..|.  +|+++|+++++++....++++...   ..           ......++|+++++
T Consensus         6 ~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~~~~~~g~a~Dl~~a~~---~~-----------~~~~~~~~d~~~~~   71 (146)
T d1ez4a1           6 QKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQA---FT-----------APKKIYSGEYSDCK   71 (146)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGG---GS-----------CCCEEEECCGGGGT
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCcEEEEeecccchhHHHHHHHhcccc---cc-----------CCceEeeccHHHhc
Confidence            599999999999999999999984  899999999876654444443211   00           01344567888999


Q ss_pred             CccEEEEcccC--------------CHHHHHHHHHHHHHhCCCCcEEEEcCCC--CcHHHHHhhcCC-CCcEEee
Q psy9056         299 NADMVIEAVFE--------------DINIKHQVIKEIEAVVPPHCVVATNTSA--IPITKIAAASKR-PDKVRNM  356 (359)
Q Consensus       299 ~aD~Vi~avp~--------------~~~~k~~v~~~l~~~~~~~~ii~s~ts~--~~~~~l~~~~~~-~~rvig~  356 (359)
                      +||+||++...              +..+.+++.+.|.++.+ +.+++..|+.  +....+....+. ++|++|+
T Consensus        72 ~adivvitag~~~~~g~~r~~l~~~N~~i~~~~~~~i~~~~p-~aivivvtNPvdv~t~~~~k~sg~p~~rViG~  145 (146)
T d1ez4a1          72 DADLVVITAGAPQKPGESRLDLVNKNLNILSSIVKPVVDSGF-DGIFLVAANPVDILTYATWKFSGFPKERVIGS  145 (146)
T ss_dssp             TCSEEEECCCC----------CHHHHHHHHHHHHHHHHHTTC-CSEEEECSSSHHHHHHHHHHHHCCCGGGEEEC
T ss_pred             cccEEEEecccccCCCCCHHHHHHHHHHHHHHHHHHHhhcCC-CcEEEEeCCccHHHHHHHHHHHCcCccceecC
Confidence            99999997632              23466778888998864 5555555544  334556666665 4789986

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=99.21  E-value=1.3e-11  Score=104.66  Aligned_cols=103  Identities=13%  Similarity=0.133  Sum_probs=75.2

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CCCCC
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DPFKN  299 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~l~~  299 (359)
                      .+|||||+|+||.+||..|.++||+|++||+++++.+...+.-       ......         .......+. +.+.+
T Consensus         3 ~nIg~IGlG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~~-------~~~~~~---------~~a~~~~~~~~~~~~   66 (176)
T d2pgda2           3 ADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANE-------AKGTKV---------LGAHSLEEMVSKLKK   66 (176)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHHTT-------TTTSSC---------EECSSHHHHHHHBCS
T ss_pred             CcEEEEeEhHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHhc-------cccccc---------cchhhhhhhhhhhcc
Confidence            6899999999999999999999999999999999877654310       000000         001111112 45788


Q ss_pred             ccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCcH
Q psy9056         300 ADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPI  340 (359)
Q Consensus       300 aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~  340 (359)
                      +|.+|.++|....+ .+++..+.+.+.++++|+..++..+.
T Consensus        67 ~~~ii~~~~~~~~v-~~v~~~l~~~~~~g~iiid~sT~~~~  106 (176)
T d2pgda2          67 PRRIILLVKAGQAV-DNFIEKLVPLLDIGDIIIDGGNSEYR  106 (176)
T ss_dssp             SCEEEECSCTTHHH-HHHHHHHHHHCCTTCEEEECSCCCHH
T ss_pred             cceEEEecCchHHH-HHHHHHHHhccccCcEEEecCcchhH
Confidence            99999999987654 55778899999999998877665544

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.21  E-value=1.7e-11  Score=101.16  Aligned_cols=122  Identities=19%  Similarity=0.175  Sum_probs=86.2

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCC--eeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcCCCC
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGY--NTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPFK  298 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~--~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~  298 (359)
                      +||+|||+|.+|.++|..++..|+  +|+++|+++++++.....+++....   .          .......+.++++++
T Consensus         7 ~KI~IiGaG~vG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~---~----------~~~~~~~~~d~~~l~   73 (148)
T d1ldna1           7 ARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVF---A----------PKPVDIWHGDYDDCR   73 (148)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTS---S----------SSCCEEEECCGGGTT
T ss_pred             CeEEEECcCHHHHHHHHHHHhcCCCceEEEEeeccccccchhccHhhCccc---c----------CCCeEEEECCHHHhc
Confidence            699999999999999999999987  8999999998876544444432100   0          001123466789999


Q ss_pred             CccEEEEcccC--------------CHHHHHHHHHHHHHhCCCCcEEEEcCCC--CcHHHHHhhcCC-CCcEEee
Q psy9056         299 NADMVIEAVFE--------------DINIKHQVIKEIEAVVPPHCVVATNTSA--IPITKIAAASKR-PDKVRNM  356 (359)
Q Consensus       299 ~aD~Vi~avp~--------------~~~~k~~v~~~l~~~~~~~~ii~s~ts~--~~~~~l~~~~~~-~~rvig~  356 (359)
                      +||+||++.-.              +..+.+++.+.|.+++++ .+++..|+.  +....+.+..+. ++||+|+
T Consensus        74 daDvvvitag~~~~~~~~R~dl~~~N~~i~~~i~~~i~~~~p~-a~~ivvtNPvd~~t~~~~k~sg~p~~rViG~  147 (148)
T d1ldna1          74 DADLVVICAGANQKPGETRLDLVDKNIAIFRSIVESVMASGFQ-GLFLVATNPVDILTYATWKFSGLPHERVIGS  147 (148)
T ss_dssp             TCSEEEECCSCCCCTTTCSGGGHHHHHHHHHHHHHHHHHHTCC-SEEEECSSSHHHHHHHHHHHHTCCGGGEEEC
T ss_pred             cceeEEEecccccccCcchhHHHHHHHHHHHHHHHHHHhhCCC-ceEEEecCccHHHHHHHHHHHCcChhheecC
Confidence            99999987632              356778888999999754 555545544  444556666664 4899986

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=99.20  E-value=4e-11  Score=98.21  Aligned_cols=122  Identities=18%  Similarity=0.269  Sum_probs=87.5

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCC--eeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcCCCC
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGY--NTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPFK  298 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~--~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~  298 (359)
                      .||+|||+|.+|+++|..++..|+  +++++|+++++++.-..++++.....             ....+..++++++++
T Consensus         2 ~Ki~IIGaG~VG~~~a~~l~~~~l~~ElvL~D~~~~~~~g~a~Dl~~a~~~~-------------~~~~i~~~~~~~~~~   68 (143)
T d1llda1           2 TKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFY-------------PTVSIDGSDDPEICR   68 (143)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTGGGS-------------TTCEEEEESCGGGGT
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccccchhHHHHHHhccccC-------------CCceeecCCCHHHhh
Confidence            589999999999999999999997  89999999988665444454431110             012345567788899


Q ss_pred             CccEEEEccc--------------CCHHHHHHHHHHHHHhCCCCcEEEEcCCC--CcHHHHHhhcCC-CCcEEee
Q psy9056         299 NADMVIEAVF--------------EDINIKHQVIKEIEAVVPPHCVVATNTSA--IPITKIAAASKR-PDKVRNM  356 (359)
Q Consensus       299 ~aD~Vi~avp--------------~~~~~k~~v~~~l~~~~~~~~ii~s~ts~--~~~~~l~~~~~~-~~rvig~  356 (359)
                      +||+||++.-              .+..+.+++.++|.++.++ .+++..|+.  +....+.+..+. ++|++|+
T Consensus        69 daDvVVitaG~~~~~g~~R~dl~~~N~~i~~~i~~~i~~~~p~-ai~ivvtNPvDvmt~~~~~~sg~p~~rViG~  142 (143)
T d1llda1          69 DADMVVITAGPRQKPGQSRLELVGATVNILKAIMPNLVKVAPN-AIYMLITNPVDIATHVAQKLTGLPENQIFGS  142 (143)
T ss_dssp             TCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTT-SEEEECCSSHHHHHHHHHHHHTCCTTSEEEC
T ss_pred             CCcEEEEecccccCCCCchhhhhhhhHHHHHHHHHHHHhhCCC-eEEEEeCCchHHHHHHHHHHHCCChhhccCC
Confidence            9999998762              2555777888899998754 555444444  444556666664 5899986

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.19  E-value=3.5e-12  Score=108.84  Aligned_cols=103  Identities=19%  Similarity=0.163  Sum_probs=72.1

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCCeeEEecCC--HHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CCC
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSF--EKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DPF  297 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~--~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~l  297 (359)
                      +||+|||+|.||+++|..|+++|++|.+|.++  ++.++.....-.+   ... ...       .....+..+++. +++
T Consensus         1 MkI~ViGaG~~GtalA~~la~~g~~V~l~~r~~~~~~~~~i~~~~~~---~~~-~~~-------~~~~~i~~~~~~~~~~   69 (180)
T d1txga2           1 MIVSILGAGAMGSALSVPLVDNGNEVRIWGTEFDTEILKSISAGREH---PRL-GVK-------LNGVEIFWPEQLEKCL   69 (180)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHHCCEEEEECCGGGHHHHHHHHTTCCB---TTT-TBC-------CCSEEEECGGGHHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEEecccHHHHHHHhhhhhh---hhh-cch-------hccccccccccHHHHH
Confidence            58999999999999999999999999999874  4433332211000   000 000       011235556776 568


Q ss_pred             CCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCC
Q psy9056         298 KNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSA  337 (359)
Q Consensus       298 ~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~  337 (359)
                      +++|+||+|+|.+.  .+.+++++.++++++.+|+ .++|
T Consensus        70 ~~ad~Ii~avps~~--~~~~~~~l~~~l~~~~ii~-~tkg  106 (180)
T d1txga2          70 ENAEVVLLGVSTDG--VLPVMSRILPYLKDQYIVL-ISKG  106 (180)
T ss_dssp             TTCSEEEECSCGGG--HHHHHHHHTTTCCSCEEEE-CCCS
T ss_pred             hccchhhcccchhh--hHHHHHhhccccccceecc-cccC
Confidence            99999999999776  7899999999998776654 4444

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.19  E-value=4e-11  Score=98.09  Aligned_cols=123  Identities=16%  Similarity=0.200  Sum_probs=87.6

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCC--eeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcCCCC
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGY--NTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPFK  298 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~--~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~  298 (359)
                      +||+|||+|.+|.++|..++..|.  ++.++|++++.++.-..++++.....   .         ....+..++++++++
T Consensus         1 MKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~alDl~~~~~~~---~---------~~~~i~~~~d~~~~~   68 (142)
T d1ojua1           1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGI---D---------KYPKIVGGADYSLLK   68 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTT---T---------CCCEEEEESCGGGGT
T ss_pred             CEEEEECcCHHHHHHHHHHHhcCcCceEEEEecccchhhHHHHHHhhhcccc---C---------CCCccccCCCHHHhc
Confidence            489999999999999999999886  79999999988765444444332110   0         012355677889999


Q ss_pred             CccEEEEcccC--------------CHHHHHHHHHHHHHhCCCCcEEEEcCCCCcH--HHHHhhcCC-CCcEEee
Q psy9056         299 NADMVIEAVFE--------------DINIKHQVIKEIEAVVPPHCVVATNTSAIPI--TKIAAASKR-PDKVRNM  356 (359)
Q Consensus       299 ~aD~Vi~avp~--------------~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~--~~l~~~~~~-~~rvig~  356 (359)
                      ++|+||++.-.              +..+.+++.+.+.++. ++.+++..|+...+  ..+....+. ++|++|+
T Consensus        69 ~adiVvitag~~~~~g~~r~~l~~~n~~i~~~i~~~i~~~~-p~aivivvtNPvD~~t~~~~k~sg~p~~rViG~  142 (142)
T d1ojua1          69 GSEIIVVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVENA-PESKILVVTNPMDVMTYIMWKESGKPRNEVFGM  142 (142)
T ss_dssp             TCSEEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHTTS-TTCEEEECSSSHHHHHHHHHHHSCCCTTSEEEC
T ss_pred             cccEEEEeccccCCCCCchHHHHHHhhHHHHHHHHHHHhhC-CCcEEEEecCChHHHHHHHHHHHCCChhcEecC
Confidence            99999987731              3446667778888886 56777777765543  345566664 5899985

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=99.17  E-value=4.5e-11  Score=98.25  Aligned_cols=122  Identities=15%  Similarity=0.220  Sum_probs=85.6

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCC--eeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcCCCC
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGY--NTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPFK  298 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~--~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~  298 (359)
                      +||+|||+|++|+++|..++..|.  +++++|+++++++....++++.....   .          ......++++++++
T Consensus         2 kKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~~~Dl~~a~~~~---~----------~~~~~~~~d~~~l~   68 (146)
T d1hyha1           2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANL---E----------AHGNIVINDWAALA   68 (146)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGS---S----------SCCEEEESCGGGGT
T ss_pred             CeEEEECcCHHHHHHHHHHHhcCCCceEEEEecccchhhhHHHhhhcccccc---C----------CccceeccCHHHhc
Confidence            799999999999999999999885  89999999988765544444322110   0          11223466788999


Q ss_pred             CccEEEEcccC------------------CHHHHHHHHHHHHHhCCCCcEEEEcCCCCc--HHHHHhhcCC-CCcEEee
Q psy9056         299 NADMVIEAVFE------------------DINIKHQVIKEIEAVVPPHCVVATNTSAIP--ITKIAAASKR-PDKVRNM  356 (359)
Q Consensus       299 ~aD~Vi~avp~------------------~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~--~~~l~~~~~~-~~rvig~  356 (359)
                      +||+||++...                  +..+.+++.+.+.+++ |+.+++..|+...  ...+.+..+. ++|++|.
T Consensus        69 ~adiVVitaG~~~~~~~~~g~~R~~l~~~N~~i~~~i~~~i~~~~-p~aivivvtNPvD~~t~~~~k~sg~p~~rViGt  146 (146)
T d1hyha1          69 DADVVISTLGNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESG-FHGVLVVISNPVDVITALFQHVTGFPAHKVIGT  146 (146)
T ss_dssp             TCSEEEECCSCGGGTC-------CTTHHHHHHHHHHHHHHHHHTT-CCSEEEECSSSHHHHHHHHHHHHCCCGGGEEEC
T ss_pred             cccEEEEeccccccccccCCccHHHHHHHHHHHHHHHHHHHhhcC-CCeEEEEecCcHHHHHHHHHHHhCCCccceeCc
Confidence            99999997531                  2345667777888876 5677766666554  3455566664 4789884

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=99.16  E-value=5.4e-11  Score=97.35  Aligned_cols=123  Identities=18%  Similarity=0.185  Sum_probs=85.2

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCC--eeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcCCCC
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGY--NTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPFK  298 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~--~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~  298 (359)
                      .||+|||+|.+|.+++..++..|.  ++.++|+++++++.....+++......            ....+..++++++++
T Consensus         1 mKI~IIGaG~VG~~la~~l~~~~l~~el~L~Di~~~~~~~~~~d~~~~~~~~~------------~~~~i~~~~~~~~~~   68 (142)
T d1guza1           1 MKITVIGAGNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGL------------FDTKVTGSNDYADTA   68 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHHHT------------CCCEEEEESCGGGGT
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCceEEEeccccccchhhhhhhhcccchhc------------ccceEEecCCHHHhc
Confidence            489999999999999999999985  899999999877654444433221110            112344567788999


Q ss_pred             CccEEEEcc--cC------------CHHHHHHHHHHHHHhCCCCcEEEEcCCCCc--HHHHHhhcCC-CCcEEee
Q psy9056         299 NADMVIEAV--FE------------DINIKHQVIKEIEAVVPPHCVVATNTSAIP--ITKIAAASKR-PDKVRNM  356 (359)
Q Consensus       299 ~aD~Vi~av--p~------------~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~--~~~l~~~~~~-~~rvig~  356 (359)
                      ++|+|+++.  |.            +..+.+++.+.|.++++ +.+++..|+...  ...+....+. ++|++|+
T Consensus        69 dadvvvitag~~~~~g~~r~~l~~~N~~i~~~i~~~i~~~~p-~aivivvtNPvd~~~~~~~~~sg~p~~rviG~  142 (142)
T d1guza1          69 NSDIVIITAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKHSK-NPIIIVVSNPLDIMTHVAWVRSGLPKERVIGM  142 (142)
T ss_dssp             TCSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCS-SCEEEECCSSHHHHHHHHHHHHCSCGGGEEEE
T ss_pred             CCeEEEEEEecCCCCCCchHHHHHHHHHHHHHHHHHhhccCC-CeEEEEecCChHHHHHHHHHHhCCChHhEeeC
Confidence            999999986  22            34466778888999874 566655555433  3445555554 4799985

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=99.14  E-value=5.7e-11  Score=97.22  Aligned_cols=122  Identities=18%  Similarity=0.249  Sum_probs=86.1

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCC-eeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcCCCCC
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGY-NTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPFKN  299 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~-~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~  299 (359)
                      +||+|||+|++|+++|..++.++. ++.++|.+++..+.....+.+.....            ....++..+++++++++
T Consensus         2 ~KI~IIGaG~VG~~~A~~l~~~~l~dl~l~D~~~~~~~~~~~Dl~~~~~~~------------~~~~~i~~~~d~~~~~~   69 (142)
T d1uxja1           2 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEASPIE------------GFDVRVTGTNNYADTAN   69 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEECSSSSHHHHHHHHHHTTHHHH------------TCCCCEEEESCGGGGTT
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCcceEEEEeeccccchhHHHHhhcccccc------------CCCCEEEecCcHHHhcC
Confidence            599999999999999999999886 99999999987666555444322111            01123555778899999


Q ss_pred             ccEEEEcccC--------------CHHHHHHHHHHHHHhCCCCcEEEEcCCCCcH--HHHHhhcCC-CCcEEe
Q psy9056         300 ADMVIEAVFE--------------DINIKHQVIKEIEAVVPPHCVVATNTSAIPI--TKIAAASKR-PDKVRN  355 (359)
Q Consensus       300 aD~Vi~avp~--------------~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~--~~l~~~~~~-~~rvig  355 (359)
                      +|+||++...              +..+.+++...|.++.+ +.+++..|+...+  .-+.+..+. ++|++|
T Consensus        70 advvvitag~~~~~~~~r~dl~~~N~~i~~~i~~~i~k~~p-~aivivvtNPvDv~t~~~~~~sglp~~rViG  141 (142)
T d1uxja1          70 SDVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPLSP-NAVIIMVNNPLDAMTYLAAEVSGFPKERVIG  141 (142)
T ss_dssp             CSEEEECCSCC---------CHHHHHHHHHHHHHHHGGGCT-TCEEEECSSSHHHHHHHHHHHHCCCGGGEEE
T ss_pred             CCEEEEeeeccCCcCcchhHHHhHHHHHHHHHHHHHhccCC-CceEEEeCCchHHHHHHHHHHHCcCcccccC
Confidence            9999998832              23356677788888865 5666666665443  345555554 478887

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.12  E-value=1.2e-10  Score=100.96  Aligned_cols=108  Identities=19%  Similarity=0.231  Sum_probs=72.5

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHH----HhHHHHHhhccCChHHHHhhhcccccccCc-C
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIK----TGLDGAVKRKKMSALDRDRYLASLVGTLSY-D  295 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~----~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~  295 (359)
                      +||+|||+|++|.++|..|+++||+|++||.|+++++.+.+...    ..+...+.        ......++.++++. +
T Consensus         1 MkI~ViGlG~vGl~~a~~la~~g~~V~g~D~n~~~i~~ln~g~~p~~e~~~~~~l~--------~~~~~~~~~~~~~~~~   72 (202)
T d1mv8a2           1 MRISIFGLGYVGAVCAGCLSARGHEVIGVDVSSTKIDLINQGKSPIVEPGLEALLQ--------QGRQTGRLSGTTDFKK   72 (202)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHH--------HHHHTTCEEEESCHHH
T ss_pred             CEEEEECCCHhHHHHHHHHHhCCCcEEEEeCCHHHHHHhcccCCcccchhhhhhhh--------hhhcccccccCCCHHH
Confidence            47999999999999999999999999999999998887653211    00111110        01112356777777 5


Q ss_pred             CCCCccEEEEcccCC--------HHHHHHHHHHHH---HhCCCCcEEEEcCC
Q psy9056         296 PFKNADMVIEAVFED--------INIKHQVIKEIE---AVVPPHCVVATNTS  336 (359)
Q Consensus       296 ~l~~aD~Vi~avp~~--------~~~k~~v~~~l~---~~~~~~~ii~s~ts  336 (359)
                      ++.++|++++|+|.+        ......+.+.+.   ....++.+|+..|+
T Consensus        73 ~i~~~d~i~i~VpTP~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~liii~ST  124 (202)
T d1mv8a2          73 AVLDSDVSFICVGTPSKKNGDLDLGYIETVCREIGFAIREKSERHTVVVRST  124 (202)
T ss_dssp             HHHTCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHHTTCCSCCEEEECSC
T ss_pred             HHhhCCEEEEecCccccccccccchhhhhhhhhhhheeecccCCcceeeccc
Confidence            689999999999873        233444554443   34456666654444

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=99.10  E-value=1.6e-10  Score=96.22  Aligned_cols=121  Identities=19%  Similarity=0.282  Sum_probs=86.0

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCC--eeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcCCCC
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGY--NTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPFK  298 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~--~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~  298 (359)
                      +||+|||+|.+|+++|+.++..|+  ++.++|++++..+....++++...   ..+          ...+....+++++.
T Consensus        21 ~KV~IIGaG~VG~~~A~~l~~~~l~~ElvLiD~~~~~a~g~alDl~h~~~---~~~----------~~~~~~~~d~~~~~   87 (160)
T d1i0za1          21 NKITVVGVGQVGMACAISILGKSLADELALVDVLEDKLKGEMMDLQHGSL---FLQ----------TPKIVADKDYSVTA   87 (160)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGG---GCC----------CSEEEECSSGGGGT
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccchhHHHHHHHhcccc---ccC----------CCeEEeccchhhcc
Confidence            699999999999999999999998  899999999887655444443210   000          01233466788999


Q ss_pred             CccEEEEccc--------------CCHHHHHHHHHHHHHhCCCCcEEEEcCCC--CcHHHHHhhcCCC-CcEEe
Q psy9056         299 NADMVIEAVF--------------EDINIKHQVIKEIEAVVPPHCVVATNTSA--IPITKIAAASKRP-DKVRN  355 (359)
Q Consensus       299 ~aD~Vi~avp--------------~~~~~k~~v~~~l~~~~~~~~ii~s~ts~--~~~~~l~~~~~~~-~rvig  355 (359)
                      +||+||++.-              .+..+.+++.++|.++.+ +.+++..|+.  +....+.+..+.| +||+|
T Consensus        88 ~adiVVitAg~~~~~g~tR~~l~~~N~~i~~~i~~~i~~~~p-~aiiivvtNPvDv~t~~~~k~sglp~~rViG  160 (160)
T d1i0za1          88 NSKIVVVTAGVRQQEGESRLNLVQRNVNVFKFIIPQIVKYSP-DCIIIVVSNPVDILTYVTWKLSGLPKHRVIG  160 (160)
T ss_dssp             TCSEEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCT-TCEEEECSSSHHHHHHHHHHHHCCCGGGEEE
T ss_pred             cccEEEEecCCccccCcchHHHHHHHHHHHHHHHHHHHhcCC-CcEEEEeCCchHHHHHHHHHHHCcCcccccC
Confidence            9999998662              144577788888999865 5655555554  4345566666654 78887

>d2b0ja2 c.2.1.6 (A:1-242) 5,10-methenyltetrahydromethanopterin hydrogenase, HMD {Archaeon Methanocaldococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 5,10-methenyltetrahydromethanopterin hydrogenase, HMD
species: Archaeon Methanocaldococcus jannaschii [TaxId: 2190]

Probab=99.08  E-value=2.4e-12  Score=114.27  Aligned_cols=165  Identities=16%  Similarity=0.166  Sum_probs=106.9

Q ss_pred             hhhHHHHHhHhhhhhhhhcCCCCCC-CCccEEEEECCCc--chHHHHH------HHHHCCCeeEEecCCHHHH-HHHHHH
Q psy9056         193 PQSKGLMGLFRAQTECKKNRLGKPQ-TPVKTVAVLGAGL--MGAGIAH------VTVDKGYNTIVKDSFEKGL-ARGLGQ  262 (359)
Q Consensus       193 ~~~~~~~~af~~k~~~~~~~~~~~~-~~~~kI~IIG~G~--mG~~iA~------~l~~~G~~V~l~d~~~~~l-~~~~~~  262 (359)
                      .+...|+..|..-....+. .+.|. ....+++++|+|.  ||..++.      +|++.|+.|++.|.++++. +.....
T Consensus        13 ~~~a~gi~~f~~~~~~~~~-~~~~~~a~~~~~~~~gagl~~~~~gi~~v~vs~~~fa~~g~~v~~~d~d~~~v~~~~~~g   91 (242)
T d2b0ja2          13 THAAAGITNFMRACEVAKE-VGKPEIALTHSSITYGAELLHLVPDVKEVIVSDPCFAEEPGLVVIDEFDPKEVMEAHLSG   91 (242)
T ss_dssp             HHHHHSSCCCHHHHHHHHH-HTCGGGGGCCHHHHHHHHHHHHCTTCCEEEEECGGGGSSSEEEECCCSCHHHHHHHHHTT
T ss_pred             chhhhccHHHHHHHhhhcc-CCCCccceeeeeeeeeecHHhhhhchhhhhccchhhhhcCCeEEEEeCCHHHHHHHHhcC
Confidence            4566777777655544443 33332 3346688999997  8888877      7999999999999998764 333321


Q ss_pred             --------HHHhHHHHHhhccCChHHHHhh----hcccccccCc-CCCCCccEEEEcccCCHHHHHHHHHHHHHhCCCCc
Q psy9056         263 --------IKTGLDGAVKRKKMSALDRDRY----LASLVGTLSY-DPFKNADMVIEAVFEDINIKHQVIKEIEAVVPPHC  329 (359)
Q Consensus       263 --------~~~~l~~~~~~~~~~~~~~~~~----~~~i~~~~~~-~~l~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~  329 (359)
                              +++.+.+..+.....+.....+    -..+++++|. ++++++|+||+|+|.. +.+.+++++|.+++++++
T Consensus        92 ~~~i~~p~l~~~v~~~~~~~~~~~~~~~~~~~pEe~Gv~v~~d~~Eav~~ADiII~~vP~~-~~v~~Vi~~I~~~l~~g~  170 (242)
T d2b0ja2          92 NPESIMPKIREVVKAKAKELPKPPKACIHLVHPEDVGLKVTSDDREAVEGADIVITWLPKG-NKQPDIIKKFADAIPEGA  170 (242)
T ss_dssp             CGGGTHHHHHHHHHHHHHTSCCTTTEEEESSCGGGGTCEEESCHHHHHTTCSEEEECCTTC-TTHHHHHHHHGGGSCTTC
T ss_pred             CchhhcchHHHHHHHHHHhccCCccchhhcCCHHHCCCEEECCHHHHHhcCCeEEEeeecH-HHHHHHHHHHHhhCCCCc
Confidence                    2222222222222111100000    0135556666 7899999999999965 457789999999999999


Q ss_pred             EEEEcCCCCc--HHHHHhhcCC-CCcEEeecCC
Q psy9056         330 VVATNTSAIP--ITKIAAASKR-PDKVRNMGRI  359 (359)
Q Consensus       330 ii~s~ts~~~--~~~l~~~~~~-~~rvig~h~~  359 (359)
                      ||++.++..+  ...+.+.+.. +-++++.|+.
T Consensus       171 Iiid~STi~~~~~~~l~e~l~~kgi~vi~~hp~  203 (242)
T d2b0ja2         171 IVTHACTIPTTKFAKIFKDLGREDLNITSYHPG  203 (242)
T ss_dssp             EEEECSSSCHHHHHHHHHHTTCTTSEEEECBCS
T ss_pred             EEEecCCCcHHHHHHHHHhcccCCCEEECCCcc
Confidence            9976665433  2456666664 4689999984

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.08  E-value=2.2e-10  Score=93.43  Aligned_cols=120  Identities=18%  Similarity=0.272  Sum_probs=83.7

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCC--eeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcc-cccccCcCCC
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGY--NTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLAS-LVGTLSYDPF  297 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~--~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-i~~~~~~~~l  297 (359)
                      .||+|||+|.+|.++|..++.+++  ++.++|+++++++.....+.+...               .... ...+++++++
T Consensus         1 mKI~IIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~~~Dl~~~~~---------------~~~~~~~~~~~~~~~   65 (140)
T d1a5za1           1 MKIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTP---------------FTRRANIYAGDYADL   65 (140)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGG---------------GSCCCEEEECCGGGG
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCCEEEEEecccccccchhcccccccc---------------ccccccccCCcHHHh
Confidence            489999999999999999999986  899999999877654443333211               1111 2235577889


Q ss_pred             CCccEEEEccc--------------CCHHHHHHHHHHHHHhCCCCcEEEEcCCCCc--HHHHHhhcCC-CCcEEee
Q psy9056         298 KNADMVIEAVF--------------EDINIKHQVIKEIEAVVPPHCVVATNTSAIP--ITKIAAASKR-PDKVRNM  356 (359)
Q Consensus       298 ~~aD~Vi~avp--------------~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~--~~~l~~~~~~-~~rvig~  356 (359)
                      ++||+||++.-              .+..+.+++.+.|.++++ +.+++..|+...  ...+.+..+. ++|++|.
T Consensus        66 ~~adivvitag~~~~~g~~r~dl~~~N~~I~~~i~~~i~~~~p-~aivivvtNPvd~~t~~~~k~sg~p~~rViGt  140 (140)
T d1a5za1          66 KGSDVVIVAAGVPQKPGETRLQLLGRNARVMKEIARNVSKYAP-DSIVIVVTNPVDVLTYFFLKESGMDPRKVFGS  140 (140)
T ss_dssp             TTCSEEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHCT-TCEEEECSSSHHHHHHHHHHHHTCCTTTEEEC
T ss_pred             cCCCEEEEecccccCCCcchhhhhccccchHHHHHHHHHhcCC-CcEEEEeCCcHHHHHHHHHHHHCcCccceeCc
Confidence            99999999862              144467778888999975 556555555443  3445555554 5789884

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=99.06  E-value=1.5e-10  Score=95.98  Aligned_cols=126  Identities=17%  Similarity=0.216  Sum_probs=87.2

Q ss_pred             CCccEEEEECCCcchHHHHHHHHHCCC-eeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-C
Q psy9056         218 TPVKTVAVLGAGLMGAGIAHVTVDKGY-NTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-D  295 (359)
Q Consensus       218 ~~~~kI~IIG~G~mG~~iA~~l~~~G~-~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~  295 (359)
                      ++-+||+|||+|.+|.++|..++..++ +++++|.+++.++.....+++..... ..           ...+..++++ +
T Consensus         5 ~k~~KI~IIGaG~VG~~lA~~l~~~~~~el~L~D~~~~~~~g~a~Dl~~~~~~~-~~-----------~~~~~~~~~~~~   72 (154)
T d1pzga1           5 QRRKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSVV-DT-----------NVSVRAEYSYEA   72 (154)
T ss_dssp             SCCCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHT-TC-----------CCCEEEECSHHH
T ss_pred             cCCCcEEEECCCHHHHHHHHHHHhCCCceEEEEEeccccchhHHHHHhhhcccc-CC-----------eeEEeccCchhh
Confidence            345799999999999999999999886 89999999988776655555432111 00           0123345555 5


Q ss_pred             CCCCccEEEEcccC-------------------CHHHHHHHHHHHHHhCCCCcEEEEcCCCCc--HHHHHhhcCC-CCcE
Q psy9056         296 PFKNADMVIEAVFE-------------------DINIKHQVIKEIEAVVPPHCVVATNTSAIP--ITKIAAASKR-PDKV  353 (359)
Q Consensus       296 ~l~~aD~Vi~avp~-------------------~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~--~~~l~~~~~~-~~rv  353 (359)
                      +++++|+|+.+...                   +..+.+++.+.+.++++ +.+++..|+...  ...+.+..+. ++|+
T Consensus        73 ~~~~adiVvitag~~~~~g~~~~~~tR~~l~~~n~~iv~~i~~~i~~~~p-~aiviivsNPvd~lt~~~~~~sg~p~~rV  151 (154)
T d1pzga1          73 ALTGADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCP-KTFIIVVTNPLDCMVKVMCEASGVPTNMI  151 (154)
T ss_dssp             HHTTCSEEEECCSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHCT-TCEEEECCSSHHHHHHHHHHHHCCCGGGE
T ss_pred             hhcCCCeEEEecccccCCCCCCcccchhhhhhhhHHHHHHHHHHHHhcCC-CcEEEEeCCcHHHHHHHHHHHhCcChhcE
Confidence            68999999997721                   23467788888999875 566655666543  3455566564 4789


Q ss_pred             Eee
Q psy9056         354 RNM  356 (359)
Q Consensus       354 ig~  356 (359)
                      +|+
T Consensus       152 iG~  154 (154)
T d1pzga1         152 CGM  154 (154)
T ss_dssp             EEC
T ss_pred             ecC
Confidence            985

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.06  E-value=6.4e-11  Score=97.86  Aligned_cols=100  Identities=11%  Similarity=0.083  Sum_probs=69.3

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CCCCC
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DPFKN  299 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~l~~  299 (359)
                      +||+|||+|+||.++|..|.++||+|++||+++.........                        ...+..+. +.+.+
T Consensus         1 MkIgiIG~G~mG~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~------------------------~~~~~~~~~e~~~~   56 (152)
T d1i36a2           1 LRVGFIGFGEVAQTLASRLRSRGVEVVTSLEGRSPSTIERAR------------------------TVGVTETSEEDVYS   56 (152)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHH------------------------HHTCEECCHHHHHT
T ss_pred             CEEEEEcHHHHHHHHHHHHHHCCCeEEEEcCchhHHHHHhhh------------------------cccccccHHHHHhh
Confidence            479999999999999999999999999999887664432210                        01122233 56789


Q ss_pred             ccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCC--cHHHHHhhcC
Q psy9056         300 ADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAI--PITKIAAASK  348 (359)
Q Consensus       300 aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~--~~~~l~~~~~  348 (359)
                      +|+||.|+|.+...  ++..++....  +.+++..++..  ....+++.+.
T Consensus        57 ~diIi~~v~~~~~~--~~~~~~~~~~--~~~~id~st~~p~~~~~l~~~~~  103 (152)
T d1i36a2          57 CPVVISAVTPGVAL--GAARRAGRHV--RGIYVDINNISPETVRMASSLIE  103 (152)
T ss_dssp             SSEEEECSCGGGHH--HHHHHHHTTC--CSEEEECSCCCHHHHHHHHHHCS
T ss_pred             cCeEEEEecCchHH--HHHHhhcccC--CceeeccCcCCHHHHHHHHHHHh
Confidence            99999999987643  6666666654  34454444433  2456776664

>d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM1727
species: Thermotoga maritima [TaxId: 2336]

Probab=99.05  E-value=4.9e-11  Score=98.46  Aligned_cols=94  Identities=7%  Similarity=-0.056  Sum_probs=64.1

Q ss_pred             EEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcCCCCCccE
Q psy9056         223 VAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPFKNADM  302 (359)
Q Consensus       223 I~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~aD~  302 (359)
                      |||||+|+||.+|+..|.+.++.+.+|+|++++++...+..                       .....+..+.++.+|+
T Consensus         2 IgfIG~G~mg~~l~~~L~~~~~~~~v~~R~~~~~~~l~~~~-----------------------~~~~~~~~~~~~~~Di   58 (153)
T d2i76a2           2 LNFVGTGTLTRFFLECLKDRYEIGYILSRSIDRARNLAEVY-----------------------GGKAATLEKHPELNGV   58 (153)
T ss_dssp             CEEESCCHHHHHHHHTTC----CCCEECSSHHHHHHHHHHT-----------------------CCCCCSSCCCCC---C
T ss_pred             EEEEeCcHHHHHHHHHHHhCCCEEEEEeCChhhhcchhhcc-----------------------cccccchhhhhccCcE
Confidence            79999999999999988775555679999999877654311                       1122334467899999


Q ss_pred             EEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCcHHHHH
Q psy9056         303 VIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPITKIA  344 (359)
Q Consensus       303 Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~l~  344 (359)
                      ||.|+|++.  ..+++.+|.   .++++|++.+++.+.+.+.
T Consensus        59 Vil~v~d~~--i~~v~~~l~---~~~~ivi~~s~~~~~~~l~   95 (153)
T d2i76a2          59 VFVIVPDRY--IKTVANHLN---LGDAVLVHCSGFLSSEIFK   95 (153)
T ss_dssp             EEECSCTTT--HHHHHTTTC---CSSCCEEECCSSSCGGGGC
T ss_pred             EEEeccchh--hhHHHhhhc---ccceeeeecccchhhhhhh
Confidence            999999776  456665542   4688888888888776553

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=99.04  E-value=1e-10  Score=95.64  Aligned_cols=120  Identities=21%  Similarity=0.275  Sum_probs=78.7

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCC--eeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcc-cccccCcCCC
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGY--NTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLAS-LVGTLSYDPF  297 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~--~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-i~~~~~~~~l  297 (359)
                      +||+|||+|.+|+++|..++.+|+  +++++|++++.++....++.+...               .... ...+.+++++
T Consensus         2 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~L~D~~~~~~~g~a~Dl~~~~~---------------~~~~~~~~~~~~~~~   66 (142)
T d1y6ja1           2 SKVAIIGAGFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLP---------------FMGQMSLYAGDYSDV   66 (142)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCC---------------CTTCEEEC--CGGGG
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeccCCccceeeeeeccCcc---------------cCCCeeEeeCcHHHh
Confidence            589999999999999999999987  899999999875443333322110               0111 1234567889


Q ss_pred             CCccEEEEcccC--------------CHHHHHHHHHHHHHhCCCCcEEEEcCCCC--cHHHHHhhcCC-CCcEEee
Q psy9056         298 KNADMVIEAVFE--------------DINIKHQVIKEIEAVVPPHCVVATNTSAI--PITKIAAASKR-PDKVRNM  356 (359)
Q Consensus       298 ~~aD~Vi~avp~--------------~~~~k~~v~~~l~~~~~~~~ii~s~ts~~--~~~~l~~~~~~-~~rvig~  356 (359)
                      ++||+|+++.-.              +..+.+++.+.+.++.+ +.+++..|+..  ....+.+..+. ++|++|+
T Consensus        67 ~~adivvitag~~~~~~~~r~~l~~~N~~i~~~i~~~i~~~~p-~ai~ivvtNPvdv~t~~~~k~sg~p~~rViG~  141 (142)
T d1y6ja1          67 KDCDVIVVTAGANRKPGETRLDLAKKNVMIAKEVTQNIMKYYN-HGVILVVSNPVDIITYMIQKWSGLPVGKVIGS  141 (142)
T ss_dssp             TTCSEEEECCCC------CHHHHHHHHHHHHHHHHHHHHHHCC-SCEEEECSSSHHHHHHHHHHHHTCCTTTEEEC
T ss_pred             CCCceEEEecccccCcCcchhHHhhHHHHHHHHHHHHhhccCC-CceEEEecChHHHHHHHHHHHHCCCccceecC
Confidence            999999997521              34466677788999875 55555555543  34455566664 4799986

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.00  E-value=4.3e-10  Score=93.48  Aligned_cols=124  Identities=17%  Similarity=0.171  Sum_probs=86.9

Q ss_pred             CCccEEEEECCCcchHHHHHHHHHCCC--eeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcC
Q psy9056         218 TPVKTVAVLGAGLMGAGIAHVTVDKGY--NTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYD  295 (359)
Q Consensus       218 ~~~~kI~IIG~G~mG~~iA~~l~~~G~--~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~  295 (359)
                      ++-.||+|||+|.+|.++|..+...|+  +++++|++++.++....++++...   ..+          .......++++
T Consensus        17 ~~~~KI~IIGaG~VG~~~A~~l~~~~l~~elvL~D~~~~~a~g~alDl~~~~~---~~~----------~~~~~~~~d~~   83 (159)
T d2ldxa1          17 LSRCKITVVGVGDVGMACAISILLKGLADELALVDADTDKLRGEALDLQHGSL---FLS----------TPKIVFGKDYN   83 (159)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHTTTSCSEEEEECSCHHHHHHHHHHHHHTTT---TCS----------CCEEEEESSGG
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCchhhhccHHHHhCcch---hcC----------CCeEEeccchh
Confidence            444689999999999999999999987  899999999887655555543210   000          01234466788


Q ss_pred             CCCCccEEEEccc--------------CCHHHHHHHHHHHHHhCCCCcEEEEcCCCCc--HHHHHhhcC-CCCcEEe
Q psy9056         296 PFKNADMVIEAVF--------------EDINIKHQVIKEIEAVVPPHCVVATNTSAIP--ITKIAAASK-RPDKVRN  355 (359)
Q Consensus       296 ~l~~aD~Vi~avp--------------~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~--~~~l~~~~~-~~~rvig  355 (359)
                      ++.+||+||.+.-              .+..+.+++...|.++. ++.+++..|+...  ...+.+..+ +++|++|
T Consensus        84 ~~~~adivvitag~~~~~~~~R~dll~~N~~i~~~i~~~i~~~~-p~~ivivvtNPvDv~t~~~~k~sg~p~~rV~G  159 (159)
T d2ldxa1          84 VSANSKLVIITAGARMVSGQTRLDLLQRNVAIMKAIVPGVIQNS-PDCKIIVVTNPVDILTYVVWKISGFPVGRVIG  159 (159)
T ss_dssp             GGTTEEEEEECCSCCCCTTTCSSCTTHHHHHHHHHHTTTHHHHS-TTCEEEECSSSHHHHHHHHHHHHCSCTTTEEE
T ss_pred             hhccccEEEEecccccCCCCCHHHHHHHHHHHHHHHHHHHhccC-CCeEEEEeCCcHHHHHHHHHHHHCcCcccccC
Confidence            9999999998762              24556667777788885 4666666666544  345566666 4578887

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=99.00  E-value=6.8e-11  Score=98.47  Aligned_cols=115  Identities=9%  Similarity=0.045  Sum_probs=80.5

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcCCCCCc
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPFKNA  300 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~a  300 (359)
                      +||+|||+|.||+.+|..|+++|++|++|+++++..+...           ..+. .    ..........++.+.+..+
T Consensus         1 MkI~IiGaG~iG~~~a~~L~~~G~~V~~~~r~~~~~~~~~-----------~~~~-~----~~~~~~~~~~~~~~~~~~~   64 (167)
T d1ks9a2           1 MKITVLGCGALGQLWLTALCKQGHEVQGWLRVPQPYCSVN-----------LVET-D----GSIFNESLTANDPDFLATS   64 (167)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSEEEEE-----------EECT-T----SCEEEEEEEESCHHHHHTC
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCceEEEEcCHHHhhhhc-----------cccC-C----ccccccccccchhhhhccc
Confidence            5899999999999999999999999999999986422110           0000 0    0000111223333567889


Q ss_pred             cEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCcHHHHHhhcCCCCcEEe
Q psy9056         301 DMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPITKIAAASKRPDKVRN  355 (359)
Q Consensus       301 D~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~rvig  355 (359)
                      |+||++++...  ..++++.+.++.+++++|++..+|+...+.....  ..++++
T Consensus        65 D~iii~vka~~--~~~~~~~l~~~~~~~~~Iv~~qNG~~~~~~l~~~--~~~v~~  115 (167)
T d1ks9a2          65 DLLLVTLKAWQ--VSDAVKSLASTLPVTTPILLIHNGMGTIEELQNI--QQPLLM  115 (167)
T ss_dssp             SEEEECSCGGG--HHHHHHHHHTTSCTTSCEEEECSSSCTTGGGTTC--CSCEEE
T ss_pred             ceEEEeecccc--hHHHHHhhccccCcccEEeeccCcccHHHHHhhc--CCcEEE
Confidence            99999998765  6688999999999999999999888766544333  344543

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=98.99  E-value=1.8e-09  Score=91.17  Aligned_cols=111  Identities=16%  Similarity=0.189  Sum_probs=75.3

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccC---c-CC
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLS---Y-DP  296 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~---~-~~  296 (359)
                      +||||||.|.||.+||..|+++||+|++||+++++.+...+...           ...     .........+   + ..
T Consensus         2 MkIGvIGlG~MG~~ma~~L~~~G~~V~~~dr~~~~~~~l~~~~~-----------~~~-----~~~~~~~~~~~~~~~~~   65 (178)
T d1pgja2           2 MDVGVVGLGVMGANLALNIAEKGFKVAVFNRTYSKSEEFMKANA-----------SAP-----FAGNLKAFETMEAFAAS   65 (178)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTT-----------TST-----TGGGEEECSCHHHHHHH
T ss_pred             CEEEEEeehHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHcCC-----------ccc-----cccchhhhhhhhHHHHh
Confidence            47999999999999999999999999999999998776543211           000     0001111111   1 34


Q ss_pred             CCCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCcH--HHHHhhcC
Q psy9056         297 FKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPI--TKIAAASK  348 (359)
Q Consensus       297 l~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~--~~l~~~~~  348 (359)
                      +..++.++++++....+ ..++..+...+.++++++..++..+.  ..+.+.+.
T Consensus        66 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~iii~~st~~~~~~~~~~~~l~  118 (178)
T d1pgja2          66 LKKPRKALILVQAGAAT-DSTIEQLKKVFEKGDILVDTGNAHFKDQGRRAQQLE  118 (178)
T ss_dssp             BCSSCEEEECCCCSHHH-HHHHHHHHHHCCTTCEEEECCCCCHHHHHHHHHHHH
T ss_pred             cccceEEEEeecCcchh-hhhhhhhhhhccccceecccCccchhHHHHHHHHHh
Confidence            67788888888866654 45667788888899988776665443  24444443

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=98.97  E-value=9.7e-10  Score=90.48  Aligned_cols=123  Identities=16%  Similarity=0.216  Sum_probs=85.5

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCC-eeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcCCCCC
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGY-NTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPFKN  299 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~-~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~  299 (359)
                      .||+|||+|.+|+++|..+...+. ++.|+|+++++.+.....+++.... . ..          ...+..+.+++++++
T Consensus         4 ~KI~IIGaG~VG~~~a~~l~~~~l~el~L~Di~~~~~~g~a~Dl~~~~~~-~-~~----------~~~v~~~~~~~~~~~   71 (150)
T d1t2da1           4 AKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVM-A-YS----------NCKVSGSNTYDDLAG   71 (150)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTHHHH-H-TC----------CCCEEEECCGGGGTT
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCCeEEEEeccCCcceeeecchhhhccc-c-CC----------CcEEEecccccccCC
Confidence            599999999999999999988886 8999999998877655555542111 0 00          012333566789999


Q ss_pred             ccEEEEcccC-------------------CHHHHHHHHHHHHHhCCCCcEEEEcCCCCcH--HHHHhhcCC-CCcEEee
Q psy9056         300 ADMVIEAVFE-------------------DINIKHQVIKEIEAVVPPHCVVATNTSAIPI--TKIAAASKR-PDKVRNM  356 (359)
Q Consensus       300 aD~Vi~avp~-------------------~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~--~~l~~~~~~-~~rvig~  356 (359)
                      +|+||++.-.                   +..+.+++.+.|.+++ |+.+++..|+...+  ..+.+..+. ++||+|+
T Consensus        72 advvvitag~~~~~g~~~~~~~R~~l~~~N~~iv~~i~~~i~~~~-p~aivivvtNPvD~~t~~~~~~sg~p~~rViG~  149 (150)
T d1t2da1          72 ADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNC-PNAFIIVVTNPVDVMVQLLHQHSGVPKNKIIGL  149 (150)
T ss_dssp             CSEEEECCSCSSCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHC-TTSEEEECSSSHHHHHHHHHHHHCCCGGGEEEC
T ss_pred             CcEEEEecccccCCCCCccccchhHHHHHHHHHHHHHHHHHHhcC-CCeEEEEecCchHHHHHHHHHHHCCCchheecc
Confidence            9999987631                   2236667778889886 46776666665543  445555554 5899986

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=98.96  E-value=6.4e-10  Score=91.03  Aligned_cols=121  Identities=18%  Similarity=0.204  Sum_probs=77.3

Q ss_pred             cEEEEECC-CcchHHHHHHHHHCCC--eeEEecCCHHH--HHHHHHHHHHhHHHHHhhccCChHHHHhhhcccc--cccC
Q psy9056         221 KTVAVLGA-GLMGAGIAHVTVDKGY--NTIVKDSFEKG--LARGLGQIKTGLDGAVKRKKMSALDRDRYLASLV--GTLS  293 (359)
Q Consensus       221 ~kI~IIG~-G~mG~~iA~~l~~~G~--~V~l~d~~~~~--l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~--~~~~  293 (359)
                      +||+|||+ |.+|.++|..++..|.  ++.++|++++.  ++.....+.+....   ...         ...+.  .+++
T Consensus         1 MKV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~~~~~~~~g~a~Dl~~~~~~---~~~---------~~~~~~~~~~d   68 (145)
T d1hyea1           1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAG---TRS---------DANIYVESDEN   68 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHHHHHHHHHHHHHHHTT---SCC---------CCEEEEEETTC
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCcccccccccchhhhHhhhcccccchhcccc---ccc---------CCccccCCcch
Confidence            47999996 9999999999999995  99999998642  33222333322110   000         01122  2446


Q ss_pred             cCCCCCccEEEEcc--cC------------CHHHHHHHHHHHHHhCCCCcEEEEcCCCCc--HHHHHhhcCC-CCcEEe
Q psy9056         294 YDPFKNADMVIEAV--FE------------DINIKHQVIKEIEAVVPPHCVVATNTSAIP--ITKIAAASKR-PDKVRN  355 (359)
Q Consensus       294 ~~~l~~aD~Vi~av--p~------------~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~--~~~l~~~~~~-~~rvig  355 (359)
                      ++++++||+||++.  |.            +..+.+++.+.|.++++ +.||+ .|+.+.  ...+....+. ++|++|
T Consensus        69 ~~~l~~aDvVVitAG~~~~~g~sR~dl~~~Na~iv~~i~~~i~~~~~-~~iiv-VtNPvD~mt~~~~k~sg~p~~rViG  145 (145)
T d1hyea1          69 LRIIDESDVVIITSGVPRKEGMSRMDLAKTNAKIVGKYAKKIAEICD-TKIFV-ITNPVDVMTYKALVDSKFERNQVFG  145 (145)
T ss_dssp             GGGGTTCSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCC-CEEEE-CSSSHHHHHHHHHHHHCCCTTSEEE
T ss_pred             HHHhccceEEEEecccccCCCCChhhhhhhhHHHHHHHHHHHhccCC-CeEEE-EcCchHHHHHHHHHHHCcCcccccC
Confidence            78899999999985  21            34466777888999975 45543 455443  3345555554 478876

>d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=98.85  E-value=6.2e-09  Score=85.99  Aligned_cols=101  Identities=15%  Similarity=0.133  Sum_probs=71.3

Q ss_pred             EEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcCCCCCcc
Q psy9056         222 TVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPFKNAD  301 (359)
Q Consensus       222 kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~aD  301 (359)
                      ||||||.|+||.+||..|.++|+.| +|++++++.++.....          +              ......+.+.++|
T Consensus         2 kIg~IGlG~MG~~ma~~L~~~g~~~-~~~~~~~~~~~~~~~~----------~--------------~~~~~~~~~~~~~   56 (156)
T d2cvza2           2 KVAFIGLGAMGYPMAGHLARRFPTL-VWNRTFEKALRHQEEF----------G--------------SEAVPLERVAEAR   56 (156)
T ss_dssp             CEEEECCSTTHHHHHHHHHTTSCEE-EECSSTHHHHHHHHHH----------C--------------CEECCGGGGGGCS
T ss_pred             eEEEEeHHHHHHHHHHHHHhCCCEE-EEeCCHHHHHHHHHHc----------C--------------Cccccccccccee
Confidence            7999999999999999999999866 5777766544432210          0              1223346678899


Q ss_pred             EEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCcH--HHHHhhcC
Q psy9056         302 MVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPI--TKIAAASK  348 (359)
Q Consensus       302 ~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~--~~l~~~~~  348 (359)
                      ++|.++|....+ ..+...+...+.++++++..++.-+-  .++.+.+.
T Consensus        57 ~~i~~~~~~~~v-~~~~~~l~~~~~~~~~iid~sT~~p~~~~~~~~~~~  104 (156)
T d2cvza2          57 VIFTCLPTTREV-YEVAEALYPYLREGTYWVDATSGEPEASRRLAERLR  104 (156)
T ss_dssp             EEEECCSSHHHH-HHHHHHHTTTCCTTEEEEECSCCCHHHHHHHHHHHH
T ss_pred             EEEecccchhhh-hhhhccccccccccccccccccCCHHHHHHHHHHHH
Confidence            999999977654 45668888889999988766655442  34555554

>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=98.76  E-value=1.4e-08  Score=82.58  Aligned_cols=119  Identities=15%  Similarity=0.216  Sum_probs=78.9

Q ss_pred             cEEEEEC-CCcchHHHHHHHHHCCC--eeEEecCCH--HHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccc-cccCc
Q psy9056         221 KTVAVLG-AGLMGAGIAHVTVDKGY--NTIVKDSFE--KGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLV-GTLSY  294 (359)
Q Consensus       221 ~kI~IIG-~G~mG~~iA~~l~~~G~--~V~l~d~~~--~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~-~~~~~  294 (359)
                      .||+||| +|.+|.++|..+...|+  ++.++|++.  +..+....++.+...               .....+ .+.++
T Consensus         1 sKV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di~~~~~~~~g~a~Dl~~~~~---------------~~~~~~i~~~~~   65 (142)
T d1o6za1           1 TKVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIA---------------YDSNTRVRQGGY   65 (142)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHHT---------------TTCCCEEEECCG
T ss_pred             CeEEEECCCCcHHHHHHHHHHhCCCCCEEEEEecCCcccccceeecchhhccc---------------ccCCceEeeCCH
Confidence            4899999 69999999999999987  899999753  333322223333211               011122 34567


Q ss_pred             CCCCCccEEEEccc-----C---------CHHHHHHHHHHHHHhCCCCcEEEEcCCCCc--HHHHHhhcCC-CCcEEe
Q psy9056         295 DPFKNADMVIEAVF-----E---------DINIKHQVIKEIEAVVPPHCVVATNTSAIP--ITKIAAASKR-PDKVRN  355 (359)
Q Consensus       295 ~~l~~aD~Vi~avp-----~---------~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~--~~~l~~~~~~-~~rvig  355 (359)
                      +++.+||+||++.-     .         +..+.+++.+.|.++.+ +.+++..|+...  ...+.+..+. ++|++|
T Consensus        66 ~~~~~aDiVvitaG~~~~~g~~R~dl~~~N~~I~~~i~~~i~~~~p-~~i~ivvtNPvDvmt~~~~k~sg~~~~rViG  142 (142)
T d1o6za1          66 EDTAGSDVVVITAGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEHND-DYISLTTSNPVDLLNRHLYEAGDRSREQVIG  142 (142)
T ss_dssp             GGGTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHTTCS-CCEEEECCSSHHHHHHHHHHHSSSCGGGEEE
T ss_pred             HHhhhcCEEEEecccccccCCchhhHHHHHHHHHHHHHHHHHhcCC-CceEEEecChHHHHHHHHHHHHCcCcccccC
Confidence            88999999998752     1         35577778888998874 566666665544  3455555554 478876

>d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Alpha-glucosidase AglA
species: Thermotoga maritima [TaxId: 2336]

Probab=98.71  E-value=3.7e-08  Score=82.57  Aligned_cols=120  Identities=18%  Similarity=0.157  Sum_probs=80.2

Q ss_pred             cEEEEECCCcchHHHHH--HHHHC----CCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc
Q psy9056         221 KTVAVLGAGLMGAGIAH--VTVDK----GYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY  294 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~--~l~~~----G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~  294 (359)
                      .||+|||+|++|.+.+.  .++..    +.+++++|+++++++.....+++..+....            .-++..++|.
T Consensus         3 mKI~iIGaGsvg~t~~~~~~l~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~------------~~~i~~~td~   70 (171)
T d1obba1           3 VKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEVGA------------DLKFEKTMNL   70 (171)
T ss_dssp             CEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHHHHHHHHHTTC------------CCEEEEESCH
T ss_pred             cEEEEECCCHHHhHHHHHHHHHhccccCCCEEEEEeCCchHHHHHHHHHHHHHHhcCC------------CeEEEEeCCh
Confidence            59999999999987543  23332    459999999999887655555443322110            0145566776


Q ss_pred             -CCCCCccEEEEcccC----------------------------------------CHHHHHHHHHHHHHhCCCCcEEEE
Q psy9056         295 -DPFKNADMVIEAVFE----------------------------------------DINIKHQVIKEIEAVVPPHCVVAT  333 (359)
Q Consensus       295 -~~l~~aD~Vi~avp~----------------------------------------~~~~k~~v~~~l~~~~~~~~ii~s  333 (359)
                       +++.+||+||.++-.                                        +..+.+++.+.|.+++ |+.+++.
T Consensus        71 ~eaL~dad~Vv~~~~~g~~~~~~~~~~i~~~~g~~~~~~~~~~~~~g~~~~~~~~rn~~i~~~i~~~i~~~~-p~a~~i~  149 (171)
T d1obba1          71 DDVIIDADFVINTAMVGGHTYLEKVRQIGEKYGYYRGIDAQEFNMVSDYYTFSNYNQLKYFVDIARKIEKLS-PKAWYLQ  149 (171)
T ss_dssp             HHHHTTCSEEEECCCTTHHHHHHHHHHHHHHTTCTTCTTCBTTBCCTTCCSSSCHHHHHHHHHHHHHHHHHC-TTCEEEE
T ss_pred             hhcccCCCeEeeecccccccceeeehhcchhhhhccCCCccccCCCCCcceeeecchHHHHHHHHHHHHHHC-cCeEEEE
Confidence             679999999986521                                        4456778889999997 5677777


Q ss_pred             cCCCCcH--HHHHhhcCCCCcEEe
Q psy9056         334 NTSAIPI--TKIAAASKRPDKVRN  355 (359)
Q Consensus       334 ~ts~~~~--~~l~~~~~~~~rvig  355 (359)
                      .|+...+  ..+.+..+  .|+||
T Consensus       150 ~TNPvdv~t~~~~k~~~--~k~iG  171 (171)
T d1obba1         150 AANPIFEGTTLVTRTVP--IKAVG  171 (171)
T ss_dssp             CSSCHHHHHHHHHHHSC--SEEEE
T ss_pred             ECChHHHHHHHHHHhcC--CCccC
Confidence            7766554  34444443  47776

>d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Maltose-6'-phosphate glucosidase GlvA
species: Bacillus subtilis [TaxId: 1423]

Probab=98.68  E-value=7.9e-08  Score=80.14  Aligned_cols=122  Identities=13%  Similarity=0.115  Sum_probs=78.8

Q ss_pred             cEEEEECCCcchHHHHH-HHHH-C-C---CeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc
Q psy9056         221 KTVAVLGAGLMGAGIAH-VTVD-K-G---YNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY  294 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~-~l~~-~-G---~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~  294 (359)
                      .||+|||+|+.|.+.+. .+.. . .   -+|+++|.++++++.....+.+.....   +         ..-++..++|.
T Consensus         4 ~KI~iIGaGsv~~~~~~~~ll~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~---~---------~~~~~~~~~d~   71 (167)
T d1u8xx1           4 FSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIREK---A---------PDIEFAATTDP   71 (167)
T ss_dssp             EEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHHHHHHHHH---C---------TTSEEEEESCH
T ss_pred             ceEEEECCChhhhHHHHHHHHhhhhhcCCCEEEEEcCChhHHHHHHHHHHHHHHHh---C---------CCcceEecCCh
Confidence            58999999999987554 2332 2 2   389999999998775444333221111   0         01245556666


Q ss_pred             -CCCCCccEEEEcccC----------------------------------CHHHHHHHHHHHHHhCCCCcEEEEcCCCCc
Q psy9056         295 -DPFKNADMVIEAVFE----------------------------------DINIKHQVIKEIEAVVPPHCVVATNTSAIP  339 (359)
Q Consensus       295 -~~l~~aD~Vi~avp~----------------------------------~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~  339 (359)
                       +++++||+||.++-.                                  +..+.+++.+.+.+++ |+.+++..|+...
T Consensus        72 ~eal~~AD~Vvitag~~~~~g~~rd~~i~~~~Gi~~~~t~g~gg~~~~~r~i~ii~~i~~~i~~~~-P~A~li~~TNPvd  150 (167)
T d1u8xx1          72 EEAFTDVDFVMAHIRVGKYAMRALDEQIPLKYGVVGQETCGPGGIAYGMRSIGGVLEILDYMEKYS-PDAWMLNYSNPAA  150 (167)
T ss_dssp             HHHHSSCSEEEECCCTTHHHHHHHHHHHHHTTTCCCCSSSHHHHHHHHHHHHHHHHHHHHHHHHHC-TTCEEEECCSCHH
T ss_pred             hhccCCCCEEEECCCcCCCCceeHHHhhchhcCceeeccccCcchheehhhHHHHHHHHHHHHhhC-CCeEEEEeCCHHH
Confidence             779999999998731                                  2345667888899997 5677776776655


Q ss_pred             H-HHHHhhcCCCCcEEe
Q psy9056         340 I-TKIAAASKRPDKVRN  355 (359)
Q Consensus       340 ~-~~l~~~~~~~~rvig  355 (359)
                      + +.+.....++.|||.
T Consensus       151 v~t~~~~k~~P~~rVI~  167 (167)
T d1u8xx1         151 IVAEATRRLRPNSKILN  167 (167)
T ss_dssp             HHHHHHHHHSTTCCEEE
T ss_pred             HHHHHHHHHCCcccccC
Confidence            4 344444445678873

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=98.66  E-value=9.3e-09  Score=88.00  Aligned_cols=102  Identities=22%  Similarity=0.266  Sum_probs=65.7

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHH----HhHHHHHhhccCChHHHHhhhcccccccCc-C
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIK----TGLDGAVKRKKMSALDRDRYLASLVGTLSY-D  295 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~----~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~  295 (359)
                      +||+|||+|++|.++|..++ .|++|++||.|+++++.+.+...    ..++...+.          ...++..+++. .
T Consensus         1 MkI~ViGlG~vGl~~a~~~a-~g~~V~g~Din~~~v~~l~~g~~p~~e~~l~~~~~~----------~~~~~~~~~~~~~   69 (196)
T d1dlja2           1 MKIAVAGSGYVGLSLGVLLS-LQNEVTIVDILPSKVDKINNGLSPIQDEYIEYYLKS----------KQLSIKATLDSKA   69 (196)
T ss_dssp             CEEEEECCSHHHHHHHHHHT-TTSEEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHH----------SCCCEEEESCHHH
T ss_pred             CEEEEECCChhHHHHHHHHH-CCCcEEEEECCHHHHHHHhhcccccchhhHHHHhhh----------hhhhhhccchhhh
Confidence            48999999999999998886 69999999999999887654321    111111111          11233444443 4


Q ss_pred             CCCCccEEEEcccCCHH---------HHHHHHHHHHHhCCCCcEEEEc
Q psy9056         296 PFKNADMVIEAVFEDIN---------IKHQVIKEIEAVVPPHCVVATN  334 (359)
Q Consensus       296 ~l~~aD~Vi~avp~~~~---------~k~~v~~~l~~~~~~~~ii~s~  334 (359)
                      ...++|++++|+|.+.+         ......+.+... .++.+++..
T Consensus        70 ~~~~~~ii~v~vpt~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~iii~  116 (196)
T d1dlja2          70 AYKEAELVIIATPTNYNSRINYFDTQHVETVIKEVLSV-NSHATLIIK  116 (196)
T ss_dssp             HHHHCSEEEECCCCCEETTTTEECCHHHHHHHHHHHHH-CSSCEEEEC
T ss_pred             hhhccccccccCCccccccCCCcceeEEeehhhhhhhc-ccceeEEee
Confidence            57889999999987443         334444555555 455555443

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.66  E-value=2.6e-08  Score=81.17  Aligned_cols=119  Identities=16%  Similarity=0.150  Sum_probs=76.6

Q ss_pred             cEEEEECC-CcchHHHHHHHHHCCC--eeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhc-ccccccCcCC
Q psy9056         221 KTVAVLGA-GLMGAGIAHVTVDKGY--NTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLA-SLVGTLSYDP  296 (359)
Q Consensus       221 ~kI~IIG~-G~mG~~iA~~l~~~G~--~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~i~~~~~~~~  296 (359)
                      .||+|||+ |.+|.++|..++..|+  +++++|.++.+.+.  .++.+..       ..      .... .+...+++++
T Consensus         1 sKv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~~~~~~a--~Dl~~~~-------~~------~~~~~~~~~~~~~~~   65 (144)
T d1mlda1           1 AKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVA--ADLSHIE-------TR------ATVKGYLGPEQLPDC   65 (144)
T ss_dssp             CEEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSHHHHH--HHHTTSS-------SS------CEEEEEESGGGHHHH
T ss_pred             CeEEEECCCChHHHHHHHHHHhCCccceEEEEeccccchhh--HHHhhhh-------hh------cCCCeEEcCCChHHH
Confidence            48999996 9999999999999987  79999998754221  1111100       00      0001 1222233467


Q ss_pred             CCCccEEEEccc--------------CCHHHHHHHHHHHHHhCCCCcEEEEcCCCCcHH-----HHH-hhcC-CCCcEEe
Q psy9056         297 FKNADMVIEAVF--------------EDINIKHQVIKEIEAVVPPHCVVATNTSAIPIT-----KIA-AASK-RPDKVRN  355 (359)
Q Consensus       297 l~~aD~Vi~avp--------------~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~-----~l~-~~~~-~~~rvig  355 (359)
                      +++||+||++.-              .+..+.+++.+.+.++. ++.+|+..|+...+-     +.. ...+ +++|++|
T Consensus        66 ~~~aDivVitag~~~~~g~sR~~ll~~N~~i~~~i~~~i~~~~-p~~iiivvtNPvD~~t~~~~~~~kk~~~~p~~rViG  144 (144)
T d1mlda1          66 LKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHC-PDAMICIISNPVNSTIPITAEVFKKHGVYNPNKIFG  144 (144)
T ss_dssp             HTTCSEEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHC-TTSEEEECSSCHHHHHHHHHHHHHHTTCCCTTSEEE
T ss_pred             hCCCCEEEECCCcCCCCCCCcchHHHHHHHHHHHHHHHHHhcC-CCeEEEEecCchhhhHHHHHHHHHHhcCCCcccccC
Confidence            899999998752              24557788888999995 567777777766531     222 2222 4688887

>d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.58  E-value=1.8e-07  Score=78.04  Aligned_cols=125  Identities=15%  Similarity=0.113  Sum_probs=75.8

Q ss_pred             cEEEEECCCcchHHHH--HHHHHCC----CeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc
Q psy9056         221 KTVAVLGAGLMGAGIA--HVTVDKG----YNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY  294 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA--~~l~~~G----~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~  294 (359)
                      .||+|||+|+.|.+.+  ..+....    -++.++|++++..+.....+.+  ........        ..-++..++|.
T Consensus         2 ~KI~iIGaGs~~~~~~~~~l~~~~~~~~~~eI~L~Di~e~~~~~~~~d~~~--~~~~~~~~--------~~~~~~~~td~   71 (169)
T d1s6ya1           2 LKIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALA--KRMVEKAG--------VPIEIHLTLDR   71 (169)
T ss_dssp             EEEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHHHHH--HHHHHHTT--------CCCEEEEESCH
T ss_pred             cEEEEECCChhhHHHHHHHHHHhccccCCCEEEEEcCCccHHHHHHHHHHH--HHHHHhcC--------CCceeeecCCc
Confidence            4899999999886543  3344332    3899999988652221111110  00111100        00134456665


Q ss_pred             -CCCCCccEEEEcccC----------------------------------CHHHHHHHHHHHHHhCCCCcEEEEcCCCCc
Q psy9056         295 -DPFKNADMVIEAVFE----------------------------------DINIKHQVIKEIEAVVPPHCVVATNTSAIP  339 (359)
Q Consensus       295 -~~l~~aD~Vi~avp~----------------------------------~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~  339 (359)
                       ++++++|+||.+...                                  +..+.+++.+.+.+++ |+.+++..|+...
T Consensus        72 ~~al~gaDvVv~ta~~~~~~~~~r~~~i~~~~gi~~~~t~g~~~~~~~~~n~~i~~~i~~~i~~~~-pda~~i~vtNPvd  150 (169)
T d1s6ya1          72 RRALDGADFVTTQFRVGGLEARAKDERIPLKYGVIGQETNGPGGLFKGLRTIPVILDIIRDMEELC-PDAWLINFTNPAG  150 (169)
T ss_dssp             HHHHTTCSEEEECCCTTHHHHHHHHHHTGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHC-TTCEEEECSSSHH
T ss_pred             hhhcCCCCEEEEccccCCCCCeehhhhhhhhcCceeccccCcchhhhccccHHHHHHHHHHHhhcC-CCeEEEEeCChHH
Confidence             678999999998842                                  3344677888999986 6777777777655


Q ss_pred             H-HHHHhhcCCCCcEEee
Q psy9056         340 I-TKIAAASKRPDKVRNM  356 (359)
Q Consensus       340 ~-~~l~~~~~~~~rvig~  356 (359)
                      + +.+.....++.|++|+
T Consensus       151 v~t~~~~k~~p~~kviGl  168 (169)
T d1s6ya1         151 MVTEAVLRYTKQEKVVGL  168 (169)
T ss_dssp             HHHHHHHHHCCCCCEEEC
T ss_pred             HHHHHHHHHCCCCCEEee
Confidence            4 4444444456799986

>d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Thermotoga maritima [TaxId: 2336]

Probab=98.55  E-value=2.9e-07  Score=76.28  Aligned_cols=120  Identities=13%  Similarity=-0.028  Sum_probs=73.6

Q ss_pred             cEEEEECCCcchHHHHHHHHH--C----CCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccC-
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVD--K----GYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLS-  293 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~--~----G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~-  293 (359)
                      .||+|||+|+.|.+++.....  .    +.+|.++|+++++++... .+.+.+   ....           ..+..+++ 
T Consensus         1 mKIaiIGaGs~g~~~~~~~l~~~~~~~~~~el~L~Did~~k~~~~~-d~~~~~---~~~~-----------~~~~~t~~~   65 (162)
T d1up7a1           1 MRIAVIGGGSSYTPELVKGLLDISEDVRIDEVIFYDIDEEKQKIVV-DFVKRL---VKDR-----------FKVLISDTF   65 (162)
T ss_dssp             CEEEEETTTCTTHHHHHHHHHHHTTTSCCCEEEEECSCHHHHHHHH-HHHHHH---HTTS-----------SEEEECSSH
T ss_pred             CEEEEECCCHHHHHHHHHHHHhcccccCccEEEEEecCcHHHHHHH-HHHHhh---hccC-----------ceEEEecCc
Confidence            489999999999999865332  2    348999999999876432 222111   1110           12333444 


Q ss_pred             cCCCCCccEEEEcccCCHH-------------------------------HHHH--HHHHHHHhCCCCcEEEEcCCCCcH
Q psy9056         294 YDPFKNADMVIEAVFEDIN-------------------------------IKHQ--VIKEIEAVVPPHCVVATNTSAIPI  340 (359)
Q Consensus       294 ~~~l~~aD~Vi~avp~~~~-------------------------------~k~~--v~~~l~~~~~~~~ii~s~ts~~~~  340 (359)
                      ++++++||+||.+.-..-.                               .+..  .+.++.+++ |+.+++..|+...+
T Consensus        66 ~~~l~~aDvVVita~~~~~~~~~r~~~i~~~~~i~~~~~~g~~g~~~~~r~~~~~~~i~~~~~~~-p~a~~i~vtNPvdi  144 (162)
T d1up7a1          66 EGAVVDAKYVIFQFRPGGLKGRENDEGIPLKYGLIGQETTGVGGFSAALRAFPIVEEYVDTVRKT-SNATIVNFTNPSGH  144 (162)
T ss_dssp             HHHHTTCSEEEECCCTTHHHHHHHHHHGGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHT-TCCEEEECSSSHHH
T ss_pred             ccccCCCCEEEEecccCCCCCcchHhhhhhhcCeeeeeccCcchhhhhhhhhHHHHHHhhhhccC-CCeEEEEeCCHHHH
Confidence            4789999999997632110                               0000  134577776 67877777776554


Q ss_pred             -HHHHhhcCCCCcEEee
Q psy9056         341 -TKIAAASKRPDKVRNM  356 (359)
Q Consensus       341 -~~l~~~~~~~~rvig~  356 (359)
                       +.+.....++.|++|+
T Consensus       145 it~~~~~~~p~~rviGl  161 (162)
T d1up7a1         145 ITEFVRNYLEYEKFIGL  161 (162)
T ss_dssp             HHHHHHHTTCCSSEEEC
T ss_pred             HHHHHHHhCCCCCEEee
Confidence             3444444456799986

>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=98.54  E-value=2.3e-08  Score=81.57  Aligned_cols=120  Identities=17%  Similarity=0.184  Sum_probs=75.3

Q ss_pred             cEEEEEC-CCcchHHHHHHHHHC-C--CeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcCC
Q psy9056         221 KTVAVLG-AGLMGAGIAHVTVDK-G--YNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDP  296 (359)
Q Consensus       221 ~kI~IIG-~G~mG~~iA~~l~~~-G--~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  296 (359)
                      +||+||| +|.+|.++|..++.+ +  .++.++|.++. .+....++++...             ......+..++++++
T Consensus         1 MKV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~~~-~~g~a~Dl~h~~~-------------~~~~~~~~~~~~~~~   66 (145)
T d2cmda1           1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPV-TPGVAVDLSHIPT-------------AVKIKGFSGEDATPA   66 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSSTT-HHHHHHHHHTSCS-------------SCEEEEECSSCCHHH
T ss_pred             CEEEEEcCCChHHHHHHHHHHhCCCCCcEEEEeccccc-chhHHHHHHCCcc-------------ccCCcEEEcCCCccc
Confidence            4899999 599999999988643 4  69999998753 3332223332100             000112233556678


Q ss_pred             CCCccEEEEccc--------------CCHHHHHHHHHHHHHhCCCCcEEEEcCCCCcH-HHH-Hhh---c-C-CCCcEEe
Q psy9056         297 FKNADMVIEAVF--------------EDINIKHQVIKEIEAVVPPHCVVATNTSAIPI-TKI-AAA---S-K-RPDKVRN  355 (359)
Q Consensus       297 l~~aD~Vi~avp--------------~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~-~~l-~~~---~-~-~~~rvig  355 (359)
                      ++++|+||++.-              .+..+.+++.++|.++.+ +.+++..|+...+ ..+ .+.   . . ++.|++|
T Consensus        67 ~~~aDvvvitaG~~~k~g~~R~dl~~~N~~i~~~v~~~i~~~~p-~aivivvtNPvD~m~~~~~~v~~~~~~l~~~RviG  145 (145)
T d2cmda1          67 LEGADVVLISAGVRRKPGMDRSDLFNVNAGIVKNLVQQVAKTCP-KACIGIITNPVNTTVAIAAEVLKKAGVYDKNKLFG  145 (145)
T ss_dssp             HTTCSEEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCT-TSEEEECSSSHHHHHHHHHHHHHHTTCCCGGGEEE
T ss_pred             cCCCCEEEECCCccCCCCcchhhHHHHHHHHHHHHHHHHHhhCC-CcEEEEccCCchHHHHHHHHHHHHcCCCChhhccC
Confidence            999999998762              145577788899999975 4566666665543 122 222   1 1 4578876

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=98.26  E-value=4.4e-07  Score=76.53  Aligned_cols=99  Identities=17%  Similarity=0.117  Sum_probs=72.6

Q ss_pred             CccEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CCC
Q psy9056         219 PVKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DPF  297 (359)
Q Consensus       219 ~~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~l  297 (359)
                      .=++|+|||.|.+|..++..+...|.+|+.||+++..                              .......++ +.+
T Consensus        41 ~gk~vgIiG~G~IG~~va~~l~~~g~~v~~~d~~~~~------------------------------~~~~~~~~l~ell   90 (181)
T d1qp8a1          41 QGEKVAVLGLGEIGTRVGKILAALGAQVRGFSRTPKE------------------------------GPWRFTNSLEEAL   90 (181)
T ss_dssp             TTCEEEEESCSTHHHHHHHHHHHTTCEEEEECSSCCC------------------------------SSSCCBSCSHHHH
T ss_pred             cCceEEEeccccccccceeeeeccccccccccccccc------------------------------cceeeeechhhhh
Confidence            3478999999999999999999999999999987531                              011223345 458


Q ss_pred             CCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCC--CcHHHHHhhc
Q psy9056         298 KNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSA--IPITKIAAAS  347 (359)
Q Consensus       298 ~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~--~~~~~l~~~~  347 (359)
                      ++||+|+.++|-+.+.+.-+=++..+.++++++|++.+-+  +.-+.+.+.+
T Consensus        91 ~~sDiv~~~~pl~~~t~~li~~~~l~~mk~~ailIN~~RG~ivd~~aL~~aL  142 (181)
T d1qp8a1          91 REARAAVCALPLNKHTRGLVKYQHLALMAEDAVFVNVGRAEVLDRDGVLRIL  142 (181)
T ss_dssp             TTCSEEEECCCCSTTTTTCBCHHHHTTSCTTCEEEECSCGGGBCHHHHHHHH
T ss_pred             hccchhhcccccccccccccccceeeeccccceEEeccccccccchhhhhhc
Confidence            9999999999987754433335666778999999877655  3344555544

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.25  E-value=5.6e-07  Score=75.04  Aligned_cols=44  Identities=25%  Similarity=0.345  Sum_probs=40.0

Q ss_pred             cEEEEE-CCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHH
Q psy9056         221 KTVAVL-GAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIK  264 (359)
Q Consensus       221 ~kI~II-G~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~  264 (359)
                      +||+|| |+|.||.++|..|+++||+|++|+|++++++...+.++
T Consensus         1 Mki~vigGaG~iG~alA~~la~~G~~V~l~~R~~e~~~~l~~~i~   45 (212)
T d1jaya_           1 MRVALLGGTGNLGKGLALRLATLGHEIVVGSRREEKAEAKAAEYR   45 (212)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSHHHHHHHHHHHH
T ss_pred             CEEEEEeCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHH
Confidence            479999 78999999999999999999999999999888777655

>d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.24  E-value=1.5e-06  Score=71.09  Aligned_cols=122  Identities=12%  Similarity=0.059  Sum_probs=76.3

Q ss_pred             cEEEEECC-CcchHHHHHHHHHCCC-------eeEEecCCHHHH--HHHHHHHHHhHHHHHhhccCChHHHHhhhccccc
Q psy9056         221 KTVAVLGA-GLMGAGIAHVTVDKGY-------NTIVKDSFEKGL--ARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVG  290 (359)
Q Consensus       221 ~kI~IIG~-G~mG~~iA~~l~~~G~-------~V~l~d~~~~~l--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~  290 (359)
                      .||+|||+ |.+|.+++..+++.+.       +++++|.+...-  +.....+.+        ...      .....+..
T Consensus         4 ~KV~IiGA~G~VG~~la~~l~~~~~~~~~~~~~L~l~d~~~~~~~~~~l~~~~~~--------~~~------~~~~~~~~   69 (154)
T d5mdha1           4 IRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQD--------CAL------PLLKDVIA   69 (154)
T ss_dssp             EEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHH--------TCC------TTEEEEEE
T ss_pred             eEEEEECCCCHHHHHHHHHHHHHHhcCCCCccEEEEecCccchhhhhhhhhhhcc--------ccc------cccccccc
Confidence            49999996 9999999999987653       588888775432  211111110        000      01122333


Q ss_pred             ccC-cCCCCCccEEEEccc--C------------CHHHHHHHHHHHHHhCCCCcEEEEcCCCCcHH--HHHhhc-C-CCC
Q psy9056         291 TLS-YDPFKNADMVIEAVF--E------------DINIKHQVIKEIEAVVPPHCVVATNTSAIPIT--KIAAAS-K-RPD  351 (359)
Q Consensus       291 ~~~-~~~l~~aD~Vi~avp--~------------~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~--~l~~~~-~-~~~  351 (359)
                      .++ +++++++|+||++.-  .            +..+.+++...|.++++++.+++..|+.+.+-  -+.+.. + +++
T Consensus        70 ~~~~~~~~~~~dvVVitag~~~~~g~sr~dll~~N~~i~k~~~~~i~k~a~~~~~iivvsNPvD~mt~v~~k~s~g~P~~  149 (154)
T d5mdha1          70 TDKEEIAFKDLDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAKKSVKVIVVGNPANTNCLTASKSAPSIPKE  149 (154)
T ss_dssp             ESCHHHHTTTCSEEEECCSCCCCTTCCTTTTHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHHHHHHHTCTTSCGG
T ss_pred             CcccccccCCceEEEEecccCCCCCCchhHHHHHhHHHHHHHHHHHHhhCCCceEEEEecCcHHHHHHHHHHHcCCCCHH
Confidence            333 478999999998662  1            34577788889999998888655555554442  333444 4 357


Q ss_pred             cEEee
Q psy9056         352 KVRNM  356 (359)
Q Consensus       352 rvig~  356 (359)
                      ||+++
T Consensus       150 ~v~~m  154 (154)
T d5mdha1         150 NFSCL  154 (154)
T ss_dssp             GEEEC
T ss_pred             HEeCC
Confidence            88875

>d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

Probab=98.24  E-value=2.4e-06  Score=71.39  Aligned_cols=123  Identities=14%  Similarity=0.096  Sum_probs=79.1

Q ss_pred             ccEEEEECC-CcchHHHHHHHHHCCC-------eeEEecCCHHH--HHHHHHHHHHhHHHHHhhccCChHHHHhhhcccc
Q psy9056         220 VKTVAVLGA-GLMGAGIAHVTVDKGY-------NTIVKDSFEKG--LARGLGQIKTGLDGAVKRKKMSALDRDRYLASLV  289 (359)
Q Consensus       220 ~~kI~IIG~-G~mG~~iA~~l~~~G~-------~V~l~d~~~~~--l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~  289 (359)
                      ..||+|+|+ |.+|.+++..+++...       ++.++|.+...  ++.....+++.        .      ........
T Consensus        24 ~~kV~I~GA~G~Ig~~l~~~La~g~v~g~~~~i~L~L~di~~~~~~l~g~~mdl~d~--------a------~~~~~~~~   89 (175)
T d7mdha1          24 LVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDS--------L------YPLLREVS   89 (175)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTT--------T------CTTEEEEE
T ss_pred             CcEEEEECCCcHHHHHHHHHHHcCcccCCCceEEEEEecCccccchhcchhhhhccc--------c------cccccCcc
Confidence            468999996 9999999999998642       67888877642  22222212210        0      01112334


Q ss_pred             cccC-cCCCCCccEEEEccc--------------CCHHHHHHHHHHHHHhCCCCcEEEEcCCCCcHHH-HHhh--cC-CC
Q psy9056         290 GTLS-YDPFKNADMVIEAVF--------------EDINIKHQVIKEIEAVVPPHCVVATNTSAIPITK-IAAA--SK-RP  350 (359)
Q Consensus       290 ~~~~-~~~l~~aD~Vi~avp--------------~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~-l~~~--~~-~~  350 (359)
                      .+++ +++++++|+||+..-              .+..+.+++.+.|.++++++++|+..++.+.+-. ++..  .+ ++
T Consensus        90 ~~~~~~~~~~~aDvVvi~ag~~rkpg~tR~Dll~~N~~I~k~~~~~i~~~a~~~~~vlvv~NPvd~~t~ia~k~a~~ip~  169 (175)
T d7mdha1          90 IGIDPYEVFEDVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVGNPCNTNALICLKNAPDIPA  169 (175)
T ss_dssp             EESCHHHHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHHHHHHHTCTTSCG
T ss_pred             ccccchhhccCCceEEEeeccCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCcEEEEecCcHHHHHHHHHHHCCCCCH
Confidence            3444 578999999998762              2455777888899999998887776776555433 2322  23 35


Q ss_pred             CcEEee
Q psy9056         351 DKVRNM  356 (359)
Q Consensus       351 ~rvig~  356 (359)
                      +||++|
T Consensus       170 ~~i~~m  175 (175)
T d7mdha1         170 KNFHAL  175 (175)
T ss_dssp             GGEEEC
T ss_pred             HHEeCC
Confidence            788775

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=98.18  E-value=8e-06  Score=64.64  Aligned_cols=100  Identities=15%  Similarity=0.158  Sum_probs=64.3

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcCCCCCc
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPFKNA  300 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~a  300 (359)
                      ++|.|+|+|.+|..++..|.+.|++|+++|.|+++++.+...+..    ..-.|..++.   ..+.       ...++++
T Consensus         1 M~IvI~G~G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~~~~----~vi~Gd~~~~---~~l~-------~~~i~~a   66 (132)
T d1lssa_           1 MYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEIDA----LVINGDCTKI---KTLE-------DAGIEDA   66 (132)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCSS----EEEESCTTSH---HHHH-------HTTTTTC
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCCcceecCChhhhhhhhhhhhh----hhccCcccch---hhhh-------hcChhhh
Confidence            489999999999999999999999999999999988765432100    0000000000   0000       0247889


Q ss_pred             cEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCC
Q psy9056         301 DMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTS  336 (359)
Q Consensus       301 D~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts  336 (359)
                      |.++.+++++.  ...+...+.+.+++..+|+...+
T Consensus        67 ~~vv~~t~~d~--~N~~~~~~~k~~~~~~iI~~~~~  100 (132)
T d1lssa_          67 DMYIAVTGKEE--VNLMSSLLAKSYGINKTIARISE  100 (132)
T ss_dssp             SEEEECCSCHH--HHHHHHHHHHHTTCCCEEEECSS
T ss_pred             hhhcccCCcHH--HHHHHHHHHHHcCCceEEEEecC
Confidence            99999887664  33344445556677777764444

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=98.17  E-value=1.8e-06  Score=68.50  Aligned_cols=97  Identities=16%  Similarity=0.135  Sum_probs=63.1

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc--CCCC
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY--DPFK  298 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~l~  298 (359)
                      |++.|+|+|.+|..+|..|.+.|++|+++|.|+++++.+...           +.      .......+-...+  ..+.
T Consensus         1 k~~iIiG~G~~G~~la~~L~~~g~~vvvid~d~~~~~~~~~~-----------~~------~~~~gd~~~~~~l~~a~i~   63 (134)
T d2hmva1           1 KQFAVIGLGRFGGSIVKELHRMGHEVLAVDINEEKVNAYASY-----------AT------HAVIANATEENELLSLGIR   63 (134)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCCEEEESCHHHHHHTTTT-----------CS------EEEECCTTCTTHHHHHTGG
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEecCcHHHHHHHHHh-----------CC------cceeeecccchhhhccCCc
Confidence            578999999999999999999999999999999987764321           10      0000000000001  1368


Q ss_pred             CccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcC
Q psy9056         299 NADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNT  335 (359)
Q Consensus       299 ~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~t  335 (359)
                      ++|.||.+++++... ..+...+.+..+...|++-..
T Consensus        64 ~a~~vi~~~~~~~~~-~~~~~~~~~~~~~~~iiar~~   99 (134)
T d2hmva1          64 NFEYVIVAIGANIQA-STLTTLLLKELDIPNIWVKAQ   99 (134)
T ss_dssp             GCSEEEECCCSCHHH-HHHHHHHHHHTTCSEEEEECC
T ss_pred             cccEEEEEcCchHHh-HHHHHHHHHHcCCCcEEeecc
Confidence            899999999988643 233344555555555665433

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=98.04  E-value=1.3e-06  Score=74.57  Aligned_cols=101  Identities=20%  Similarity=0.198  Sum_probs=69.8

Q ss_pred             ccEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CCCC
Q psy9056         220 VKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DPFK  298 (359)
Q Consensus       220 ~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~l~  298 (359)
                      =++|||||.|.+|..+|..+..-|.+|+.||+.......             .             ... ...++ +.++
T Consensus        43 gk~vgIiG~G~IG~~va~~l~~fg~~V~~~d~~~~~~~~-------------~-------------~~~-~~~~l~~~l~   95 (197)
T d1j4aa1          43 DQVVGVVGTGHIGQVFMQIMEGFGAKVITYDIFRNPELE-------------K-------------KGY-YVDSLDDLYK   95 (197)
T ss_dssp             GSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCHHHH-------------H-------------TTC-BCSCHHHHHH
T ss_pred             CCeEEEecccccchhHHHhHhhhcccccccCcccccccc-------------c-------------cee-eecccccccc
Confidence            378999999999999999999999999999977542110             0             001 12233 4578


Q ss_pred             CccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCC--CcHHHHHhhc
Q psy9056         299 NADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSA--IPITKIAAAS  347 (359)
Q Consensus       299 ~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~--~~~~~l~~~~  347 (359)
                      +||+|+.++|-+.+.+.-+=++..+.++++++++..+-|  +.-..+.+.+
T Consensus        96 ~sDii~~~~plt~~T~~li~~~~l~~mk~~a~lIN~sRG~ivde~aL~~aL  146 (197)
T d1j4aa1          96 QADVISLHVPDVPANVHMINDESIAKMKQDVVIVNVSRGPLVDTDAVIRGL  146 (197)
T ss_dssp             HCSEEEECSCCCGGGTTCBSHHHHHHSCTTEEEEECSCGGGBCHHHHHHHH
T ss_pred             ccccccccCCccccccccccHHHHhhhCCccEEEecCchhhhhhHHHHHHH
Confidence            999999999977764443335556678899988766554  3334454444

>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

Probab=98.03  E-value=1.2e-06  Score=74.39  Aligned_cols=105  Identities=12%  Similarity=0.042  Sum_probs=72.2

Q ss_pred             ccEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CCCC
Q psy9056         220 VKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DPFK  298 (359)
Q Consensus       220 ~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~l~  298 (359)
                      -++|||||.|.+|..+|..+...|.+|..||+..........                        .......++ +.++
T Consensus        47 g~tvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~~~~~~------------------------~~~~~~~~l~~ll~  102 (191)
T d1gdha1          47 NKTLGIYGFGSIGQALAKRAQGFDMDIDYFDTHRASSSDEAS------------------------YQATFHDSLDSLLS  102 (191)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSCCCHHHHHH------------------------HTCEECSSHHHHHH
T ss_pred             ccceEEeecccchHHHHHHHHhhccccccccccccccchhhc------------------------ccccccCCHHHHHh
Confidence            479999999999999999999999999999987542221100                        011122334 4578


Q ss_pred             CccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCC--cHHHHHhhcC
Q psy9056         299 NADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAI--PITKIAAASK  348 (359)
Q Consensus       299 ~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~--~~~~l~~~~~  348 (359)
                      .||+|+.++|-+.+.+.-+=++..+.++++.+++..+-|-  .-+.+.+.+.
T Consensus       103 ~sD~v~l~~plt~~T~~li~~~~l~~mk~~a~lIN~sRG~ivde~aL~~aL~  154 (191)
T d1gdha1         103 VSQFFSLNAPSTPETRYFFNKATIKSLPQGAIVVNTARGDLVDNELVVAALE  154 (191)
T ss_dssp             HCSEEEECCCCCTTTTTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHH
T ss_pred             hCCeEEecCCCCchHhheecHHHhhCcCCccEEEecCCccchhhHHHHHHHH
Confidence            9999999999877644433356667789999997666543  2345555443

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=98.03  E-value=6.5e-07  Score=76.22  Aligned_cols=102  Identities=15%  Similarity=0.133  Sum_probs=71.2

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CCCCC
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DPFKN  299 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~l~~  299 (359)
                      ++|||||.|.+|..+|..+..-|.+|..||+....-...            .             ..+....++ +.++.
T Consensus        50 ktvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~~~~------------~-------------~~~~~~~~l~~ll~~  104 (193)
T d1mx3a1          50 ETLGIIGLGRVGQAVALRAKAFGFNVLFYDPYLSDGVER------------A-------------LGLQRVSTLQDLLFH  104 (193)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEECTTSCTTHHH------------H-------------HTCEECSSHHHHHHH
T ss_pred             ceEEEeccccccccceeeeeccccceeeccCcccccchh------------h-------------hccccccchhhcccc
Confidence            699999999999999999999999999999875421100            0             012233445 45799


Q ss_pred             ccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCC--cHHHHHhhc
Q psy9056         300 ADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAI--PITKIAAAS  347 (359)
Q Consensus       300 aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~--~~~~l~~~~  347 (359)
                      ||+|+.++|-+.+.+.-+=++..+.++++++++..+-|-  .-+.+.+.+
T Consensus       105 sD~i~~~~plt~~T~~li~~~~l~~mk~~a~lIN~sRG~ivde~aL~~aL  154 (193)
T d1mx3a1         105 SDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTARGGLVDEKALAQAL  154 (193)
T ss_dssp             CSEEEECCCCCTTCTTSBSHHHHTTSCTTEEEEECSCTTSBCHHHHHHHH
T ss_pred             CCEEEEeecccccchhhhhHHHHhccCCCCeEEecCCceEEcHHHHHHHH
Confidence            999999999766544333355666789999988666553  334555544

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=97.99  E-value=3.1e-06  Score=69.77  Aligned_cols=40  Identities=23%  Similarity=0.248  Sum_probs=37.5

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHH
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGL  260 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~  260 (359)
                      |+|.|||+|.||..+|..|+++||+|+++|++.++++...
T Consensus         3 K~IliiGaG~~G~~~a~~L~~~g~~V~v~dr~~~~a~~l~   42 (182)
T d1e5qa1           3 KSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLESAKKLS   42 (182)
T ss_dssp             CEEEEECCSTTHHHHHHHHHTTTCEEEEEESCHHHHHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEECChHHHHHHH
Confidence            7999999999999999999999999999999999877654

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=97.95  E-value=2.6e-06  Score=72.75  Aligned_cols=100  Identities=20%  Similarity=0.219  Sum_probs=70.2

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CCCCC
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DPFKN  299 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~l~~  299 (359)
                      ++|||||.|.+|..+|..+..-|.+|+.||+.+.....                           ..+.. .++ +.++.
T Consensus        46 ktvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~~~---------------------------~~~~~-~~l~~l~~~   97 (199)
T d1dxya1          46 QTVGVMGTGHIGQVAIKLFKGFGAKVIAYDPYPMKGDH---------------------------PDFDY-VSLEDLFKQ   97 (199)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSSCC---------------------------TTCEE-CCHHHHHHH
T ss_pred             eeeeeeecccccccccccccccceeeeccCCccchhhh---------------------------cchhH-HHHHHHHHh
Confidence            78999999999999999999999999999987532000                           01111 233 34688


Q ss_pred             ccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCC--CcHHHHHhhcC
Q psy9056         300 ADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSA--IPITKIAAASK  348 (359)
Q Consensus       300 aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~--~~~~~l~~~~~  348 (359)
                      ||+|+.++|-+.+.+.-+=++..+.++++++++..+-|  +.-+.+.+.+.
T Consensus        98 ~D~v~~~~plt~~T~~li~~~~l~~mk~~a~lIN~aRG~vvde~aL~~aL~  148 (199)
T d1dxya1          98 SDVIDLHVPGIEQNTHIINEAAFNLMKPGAIVINTARPNLIDTQAMLSNLK  148 (199)
T ss_dssp             CSEEEECCCCCGGGTTSBCHHHHHHSCTTEEEEECSCTTSBCHHHHHHHHH
T ss_pred             cccceeeecccccccccccHHHhhccCCceEEEecccHhhhhhHHHHHHHh
Confidence            99999999987764433335566678999998866654  33345655554

>d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=97.91  E-value=6.8e-06  Score=67.07  Aligned_cols=120  Identities=19%  Similarity=0.122  Sum_probs=73.1

Q ss_pred             cEEEEECC-CcchHHHHHHHHHCCC-------eeEEe--cCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhccccc
Q psy9056         221 KTVAVLGA-GLMGAGIAHVTVDKGY-------NTIVK--DSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVG  290 (359)
Q Consensus       221 ~kI~IIG~-G~mG~~iA~~l~~~G~-------~V~l~--d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~  290 (359)
                      .||+|||+ |.+|..++..++..++       ...++  +.+.+.++.....+.+.        ..      .....+..
T Consensus         5 ~KV~IiGA~G~VG~~~a~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~--------~~------~~~~~~~~   70 (154)
T d1y7ta1           5 VRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDC--------AF------PLLAGLEA   70 (154)
T ss_dssp             EEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTT--------TC------TTEEEEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHhccccccccchhHhHhccccchhhHcCchhhhhcc--------cc------cccccccc
Confidence            49999997 9999999999998764       23344  34444433322211110        00      01112333


Q ss_pred             c-cCcCCCCCccEEEEcc--cC------------CHHHHHHHHHHHHHhCCCCcEEEEcCCCCcHH-HHH-hh-cCC-CC
Q psy9056         291 T-LSYDPFKNADMVIEAV--FE------------DINIKHQVIKEIEAVVPPHCVVATNTSAIPIT-KIA-AA-SKR-PD  351 (359)
Q Consensus       291 ~-~~~~~l~~aD~Vi~av--p~------------~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~-~l~-~~-~~~-~~  351 (359)
                      + +++++++++|+||++.  |.            +..+.+++.+.|.++++++.+|+..|+.+.+- .++ +. .+. ++
T Consensus        71 ~~~~~~~~~~advViitaG~~~~pg~~r~dl~~~N~~i~~~~~~~i~k~a~~~~~vivvsNPvDv~t~~a~k~asg~p~~  150 (154)
T d1y7ta1          71 TDDPKVAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKKDVKVLVVGNPANTNALIAYKNAPGLNPR  150 (154)
T ss_dssp             ESCHHHHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHHHHHHHTCTTSCGG
T ss_pred             CCchhhhcccccEEEeecCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEecCcHHHHHHHHHHHcCCCcHH
Confidence            3 3447899999999876  21            34567778888999998888777667655543 232 32 344 46


Q ss_pred             cEE
Q psy9056         352 KVR  354 (359)
Q Consensus       352 rvi  354 (359)
                      |||
T Consensus       151 rvi  153 (154)
T d1y7ta1         151 NFT  153 (154)
T ss_dssp             GEE
T ss_pred             hcc
Confidence            765

>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=97.89  E-value=4.3e-06  Score=70.61  Aligned_cols=106  Identities=12%  Similarity=0.055  Sum_probs=73.4

Q ss_pred             CccEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CCC
Q psy9056         219 PVKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DPF  297 (359)
Q Consensus       219 ~~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~l  297 (359)
                      .-++|+|||.|.+|..++..+...|.+|..||+....-.....                        ..+....++ +.+
T Consensus        43 ~~~~vgiiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~~~~~~------------------------~~~~~~~~l~~~l   98 (188)
T d2naca1          43 EAMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHRLPESVEKE------------------------LNLTWHATREDMY   98 (188)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHGGGTCEEEEECSSCCCHHHHHH------------------------HTCEECSSHHHHG
T ss_pred             cccceeeccccccchhhhhhhhccCceEEEEeecccccccccc------------------------ccccccCCHHHHH
Confidence            3479999999999999999999999999999986432111000                        012223344 568


Q ss_pred             CCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCC--CcHHHHHhhcC
Q psy9056         298 KNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSA--IPITKIAAASK  348 (359)
Q Consensus       298 ~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~--~~~~~l~~~~~  348 (359)
                      ++||+|+.++|-+.+.+.-+=++..+.++++.+|+..+-|  +..+.+.+.+.
T Consensus        99 ~~sD~v~~~~plt~~T~~li~~~~l~~mk~ga~lIN~aRG~ivd~~aL~~aL~  151 (188)
T d2naca1          99 PVCDVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTARGKLCDRDAVARALE  151 (188)
T ss_dssp             GGCSEEEECSCCCTTTTTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHH
T ss_pred             HhccchhhcccccccchhhhHHHHHHhCCCCCEEEecCchhhhhHHHHHHHHh
Confidence            9999999999977754444445667778999998766654  33456665554

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.87  E-value=1.1e-05  Score=66.02  Aligned_cols=98  Identities=13%  Similarity=0.090  Sum_probs=68.7

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcCCCCCc
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPFKNA  300 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~a  300 (359)
                      |+++|+|.|.+|..+|..+...|-+|+++|++|-+.-++.                        .+........+++..+
T Consensus        25 k~v~V~GyG~iG~g~A~~~rg~G~~V~v~e~dp~~al~A~------------------------~dG~~v~~~~~a~~~a   80 (163)
T d1li4a1          25 KVAVVAGYGDVGKGCAQALRGFGARVIITEIDPINALQAA------------------------MEGYEVTTMDEACQEG   80 (163)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHH------------------------HTTCEECCHHHHTTTC
T ss_pred             CEEEEeccccccHHHHHHHHhCCCeeEeeecccchhHHhh------------------------cCceEeeehhhhhhhc
Confidence            7899999999999999999999999999999996422211                        1223333323668999


Q ss_pred             cEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCC---CCcHHHHHhh
Q psy9056         301 DMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTS---AIPITKIAAA  346 (359)
Q Consensus       301 D~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts---~~~~~~l~~~  346 (359)
                      |++|.++-..--+    -.+..+.+++++|+++.+.   -+.+..+.+.
T Consensus        81 divvtaTGn~~vI----~~eh~~~MKdgaIL~N~Ghfd~EId~~~L~~~  125 (163)
T d1li4a1          81 NIFVTTTGCIDII----LGRHFEQMKDDAIVCNIGHFDVEIDVKWLNEN  125 (163)
T ss_dssp             SEEEECSSCSCSB----CHHHHTTCCTTEEEEECSSSTTSBCHHHHHHH
T ss_pred             cEEEecCCCccch----hHHHHHhccCCeEEEEeccccceecHHHHhhc
Confidence            9999887643212    2334456899999987653   3556666553

>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.84  E-value=6e-06  Score=69.49  Aligned_cols=105  Identities=20%  Similarity=0.193  Sum_probs=73.1

Q ss_pred             CCccEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CC
Q psy9056         218 TPVKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DP  296 (359)
Q Consensus       218 ~~~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~  296 (359)
                      ..-++|+|||.|.+|..+|..+..-|.+|+.||+.........            .             .+. ..++ +.
T Consensus        42 l~~k~vgiiG~G~IG~~va~~~~~fg~~v~~~d~~~~~~~~~~------------~-------------~~~-~~~l~el   95 (184)
T d1ygya1          42 IFGKTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPYVSPARAAQ------------L-------------GIE-LLSLDDL   95 (184)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECTTSCHHHHHH------------H-------------TCE-ECCHHHH
T ss_pred             ccceeeeeccccchhHHHHHHhhhccceEEeecCCCChhHHhh------------c-------------Cce-eccHHHH
Confidence            3447999999999999999999999999999998754322110            0             111 1233 45


Q ss_pred             CCCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCC--CcHHHHHhhcC
Q psy9056         297 FKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSA--IPITKIAAASK  348 (359)
Q Consensus       297 l~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~--~~~~~l~~~~~  348 (359)
                      ++.||+|+.++|-+.+.+.-+=++..+.++++++++..+-|  +.-+.+.+.+.
T Consensus        96 l~~sDiv~~~~Plt~~T~~lin~~~l~~mk~~a~lIN~sRG~iVde~aL~~aL~  149 (184)
T d1ygya1          96 LARADFISVHLPKTPETAGLIDKEALAKTKPGVIIVNAARGGLVDEAALADAIT  149 (184)
T ss_dssp             HHHCSEEEECCCCSTTTTTCBCHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHH
T ss_pred             HhhCCEEEEcCCCCchhhhhhhHHHHhhhCCCceEEEecchhhhhhHHHHHHHh
Confidence            78999999999977764333335666778999999876655  33346665554

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=97.75  E-value=1.2e-05  Score=65.86  Aligned_cols=96  Identities=22%  Similarity=0.214  Sum_probs=64.6

Q ss_pred             CccEEEEECCCcchHHHHHHHHHCCC-eeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CC
Q psy9056         219 PVKTVAVLGAGLMGAGIAHVTVDKGY-NTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DP  296 (359)
Q Consensus       219 ~~~kI~IIG~G~mG~~iA~~l~~~G~-~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~  296 (359)
                      .-++|.|||+|.||..++..|...|+ +|++++|+.++.+.....+..                     ....-+++ +.
T Consensus        23 ~~~~ilviGaG~~g~~v~~~L~~~g~~~i~v~nRt~~ka~~l~~~~~~---------------------~~~~~~~~~~~   81 (159)
T d1gpja2          23 HDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDLGG---------------------EAVRFDELVDH   81 (159)
T ss_dssp             TTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHHTC---------------------EECCGGGHHHH
T ss_pred             ccCeEEEECCCHHHHHHHHHHHhcCCcEEEEEcCcHHHHHHHHHhhhc---------------------ccccchhHHHH
Confidence            44799999999999999999999998 699999999887765442210                     01111122 45


Q ss_pred             CCCccEEEEcccCCHH-HHHHHHHHHHHhCC--CCcEEEEcC
Q psy9056         297 FKNADMVIEAVFEDIN-IKHQVIKEIEAVVP--PHCVVATNT  335 (359)
Q Consensus       297 l~~aD~Vi~avp~~~~-~k~~v~~~l~~~~~--~~~ii~s~t  335 (359)
                      +.++|+||.|++.+.. +.++.++...+.-+  ...+|++.+
T Consensus        82 l~~~Divi~atss~~~ii~~~~i~~~~~~r~~~~~~~iiDla  123 (159)
T d1gpja2          82 LARSDVVVSATAAPHPVIHVDDVREALRKRDRRSPILIIDIA  123 (159)
T ss_dssp             HHTCSEEEECCSSSSCCBCHHHHHHHHHHCSSCCCEEEEECC
T ss_pred             hccCCEEEEecCCCCccccHhhhHHHHHhcccCCCeEEEeec
Confidence            7899999999975432 33455555433322  334777754

>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=97.64  E-value=1.6e-05  Score=66.95  Aligned_cols=101  Identities=17%  Similarity=0.181  Sum_probs=71.6

Q ss_pred             ccEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CCCC
Q psy9056         220 VKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DPFK  298 (359)
Q Consensus       220 ~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~l~  298 (359)
                      -++|+|||.|.+|..+|..+...|.+|+.||+......                            .......++ +.++
T Consensus        44 ~~~vgiiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~~----------------------------~~~~~~~~l~ell~   95 (188)
T d1sc6a1          44 GKKLGIIGYGHIGTQLGILAESLGMYVYFYDIENKLPL----------------------------GNATQVQHLSDLLN   95 (188)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCCC----------------------------TTCEECSCHHHHHH
T ss_pred             ceEEEEeecccchhhhhhhcccccceEeeccccccchh----------------------------hhhhhhhhHHHHHh
Confidence            37999999999999999999999999999998653100                            001112233 4578


Q ss_pred             CccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCC--CcHHHHHhhcC
Q psy9056         299 NADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSA--IPITKIAAASK  348 (359)
Q Consensus       299 ~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~--~~~~~l~~~~~  348 (359)
                      .||+|++++|-+.+.+.-+=++..+.++++.+++..+-|  +.-+.+.+.+.
T Consensus        96 ~sDii~i~~plt~~T~~li~~~~l~~mk~~a~lIN~aRG~lvde~aL~~aL~  147 (188)
T d1sc6a1          96 MSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVVDIPALADALA  147 (188)
T ss_dssp             HCSEEEECCCSSTTTTTCBCHHHHHHSCTTEEEEECSCSSSBCHHHHHHHHH
T ss_pred             hccceeecccCCcchhhhccHHHHhhCCCCCEEEEcCcHHhhhhHHHHHHHH
Confidence            899999999977654433335667778999999876654  33456666554

>d1np3a2 c.2.1.6 (A:1-182) Class I ketol-acid reductoisomerase (KARI) {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Class I ketol-acid reductoisomerase (KARI)
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.50  E-value=7.1e-05  Score=61.45  Aligned_cols=93  Identities=23%  Similarity=0.225  Sum_probs=68.5

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHH-HHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcCCCCC
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKG-LARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPFKN  299 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~-l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~  299 (359)
                      ++|+|||.|+.|.+-|..|..+|++|++=-+.... .+++.           +             +.+.+.+-.|+++.
T Consensus        17 k~IaViGYGsQG~AhAlNLrDSG~~V~VGLr~gs~s~~~A~-----------~-------------~Gf~v~~~~eA~~~   72 (182)
T d1np3a2          17 KKVAIIGYGSQGHAHACNLKDSGVDVTVGLRSGSATVAKAE-----------A-------------HGLKVADVKTAVAA   72 (182)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCEEEECCTTCHHHHHHH-----------H-------------TTCEEECHHHHHHT
T ss_pred             CEEEEEeeCcHhHHHHhhhhhcCCCEEEEcCCCCccHHHHh-----------h-------------hccccccHHHHhhh
Confidence            78999999999999999999999999887665432 22211           1             23344333467899


Q ss_pred             ccEEEEcccCCHHHHHHHHH-HHHHhCCCCcEEEEcCCCCcH
Q psy9056         300 ADMVIEAVFEDINIKHQVIK-EIEAVVPPHCVVATNTSAIPI  340 (359)
Q Consensus       300 aD~Vi~avp~~~~~k~~v~~-~l~~~~~~~~ii~s~ts~~~~  340 (359)
                      +|+|...+|+..  ..++++ +|.++++++..+.- +.|..+
T Consensus        73 aDiim~L~PD~~--q~~vy~~~I~p~lk~g~~L~F-aHGfnI  111 (182)
T d1np3a2          73 ADVVMILTPDEF--QGRLYKEEIEPNLKKGATLAF-AHGFSI  111 (182)
T ss_dssp             CSEEEECSCHHH--HHHHHHHHTGGGCCTTCEEEE-SCCHHH
T ss_pred             cCeeeeecchHH--HHHHHHHhhhhhcCCCcEEEE-eccceE
Confidence            999999999666  458885 79999999998753 334433

>d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative oxidoreductase VCA1048
species: Vibrio cholerae [TaxId: 666]

Probab=97.50  E-value=0.0003  Score=57.37  Aligned_cols=79  Identities=13%  Similarity=0.085  Sum_probs=52.0

Q ss_pred             cEEEEECCCcchHH-HHHHHHHC-CCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcCC-C
Q psy9056         221 KTVAVLGAGLMGAG-IAHVTVDK-GYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDP-F  297 (359)
Q Consensus       221 ~kI~IIG~G~mG~~-iA~~l~~~-G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-l  297 (359)
                      .||+|||+|.||.. ....+.+. +.++.++|.++++.+...+.++                      .....+|++. +
T Consensus         2 irvgiiG~G~~~~~~~~~~l~~~~~~~~~~~d~~~~~~~~~~~~~~----------------------~~~~~~~~~~ll   59 (167)
T d1xeaa1           2 LKIAMIGLGDIAQKAYLPVLAQWPDIELVLCTRNPKVLGTLATRYR----------------------VSATCTDYRDVL   59 (167)
T ss_dssp             EEEEEECCCHHHHHTHHHHHTTSTTEEEEEECSCHHHHHHHHHHTT----------------------CCCCCSSTTGGG
T ss_pred             eEEEEEcCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHhcc----------------------cccccccHHHhc
Confidence            38999999999976 45555554 5688899999988665433211                      1122344433 3


Q ss_pred             -CCccEEEEcccCCHHHHHHHHHHHHH
Q psy9056         298 -KNADMVIEAVFEDINIKHQVIKEIEA  323 (359)
Q Consensus       298 -~~aD~Vi~avp~~~~~k~~v~~~l~~  323 (359)
                       .+.|+|++|+|.+...  .+.....+
T Consensus        60 ~~~iD~V~I~tp~~~H~--~~~~~al~   84 (167)
T d1xeaa1          60 QYGVDAVMIHAATDVHS--TLAAFFLH   84 (167)
T ss_dssp             GGCCSEEEECSCGGGHH--HHHHHHHH
T ss_pred             ccccceecccccccccc--cccccccc
Confidence             4689999999987754  55554444

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=97.47  E-value=6.8e-05  Score=61.03  Aligned_cols=97  Identities=15%  Similarity=0.091  Sum_probs=68.9

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcCCCCCc
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPFKNA  300 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~a  300 (359)
                      |++.|+|.|..|.++|..+...|-+|+++++||-+.-++                        .++.+.+.+-.++++.+
T Consensus        24 k~vvV~GYG~vGrG~A~~~rg~Ga~V~V~E~DPi~alqA------------------------~mdGf~v~~~~~a~~~a   79 (163)
T d1v8ba1          24 KIVVICGYGDVGKGCASSMKGLGARVYITEIDPICAIQA------------------------VMEGFNVVTLDEIVDKG   79 (163)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHTCEEEEECSCHHHHHHH------------------------HTTTCEECCHHHHTTTC
T ss_pred             CEEEEecccccchhHHHHHHhCCCEEEEEecCchhhHHH------------------------HhcCCccCchhHccccC
Confidence            799999999999999999999999999999999542211                        12334444334678999


Q ss_pred             cEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCC---CCcHHHHHh
Q psy9056         301 DMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTS---AIPITKIAA  345 (359)
Q Consensus       301 D~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts---~~~~~~l~~  345 (359)
                      |++|-++...--+    -.+.-+.+++++||++...   -+.+..+.+
T Consensus        80 Di~vTaTGn~~vI----~~~h~~~MKdgaIl~N~GHfd~EIdv~~L~~  123 (163)
T d1v8ba1          80 DFFITCTGNVDVI----KLEHLLKMKNNAVVGNIGHFDDEIQVNELFN  123 (163)
T ss_dssp             SEEEECCSSSSSB----CHHHHTTCCTTCEEEECSSTTTSBCHHHHHT
T ss_pred             cEEEEcCCCCccc----cHHHHHHhhCCeEEEeccccchhhhhHHHHh
Confidence            9999999754322    2334456789999976553   344444443

>d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Probable oxidoreductase At4g09670
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.42  E-value=0.0002  Score=59.45  Aligned_cols=79  Identities=9%  Similarity=0.024  Sum_probs=52.7

Q ss_pred             EEEEECCCcchHHHHHHHHHC-CCeeE-EecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcCC-C-
Q psy9056         222 TVAVLGAGLMGAGIAHVTVDK-GYNTI-VKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDP-F-  297 (359)
Q Consensus       222 kI~IIG~G~mG~~iA~~l~~~-G~~V~-l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-l-  297 (359)
                      ||||||+|.||...+..+... +.+|+ ++|+++++.+...+..+           +.        ....+.+|++. + 
T Consensus         3 ki~iIG~G~~g~~~~~~l~~~~~~~i~ai~d~~~~~~~~~~~~~~-----------~~--------~~~~~~~~~~~ll~   63 (184)
T d1ydwa1           3 RIGVMGCADIARKVSRAIHLAPNATISGVASRSLEKAKAFATANN-----------YP--------ESTKIHGSYESLLE   63 (184)
T ss_dssp             EEEEESCCTTHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHTT-----------CC--------TTCEEESSHHHHHH
T ss_pred             EEEEEcCCHHHHHHHHHHHhCCCCEEEEEEeCCccccccchhccc-----------cc--------cceeecCcHHHhhh
Confidence            899999999999999888776 56766 67999987665432110           00        12234455532 2 


Q ss_pred             -CCccEEEEcccCCHHHHHHHHHHH
Q psy9056         298 -KNADMVIEAVFEDINIKHQVIKEI  321 (359)
Q Consensus       298 -~~aD~Vi~avp~~~~~k~~v~~~l  321 (359)
                       .+.|+|++|+|.+...  ++....
T Consensus        64 ~~~iD~v~I~tp~~~h~--~~~~~~   86 (184)
T d1ydwa1          64 DPEIDALYVPLPTSLHV--EWAIKA   86 (184)
T ss_dssp             CTTCCEEEECCCGGGHH--HHHHHH
T ss_pred             ccccceeeecccchhhc--chhhhh
Confidence             5689999999987754  444443

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=97.39  E-value=2e-05  Score=64.73  Aligned_cols=98  Identities=18%  Similarity=0.161  Sum_probs=66.1

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CCCCC
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DPFKN  299 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~l~~  299 (359)
                      .||.|||+|..|..-+......|-+|+++|.++++++.....+...    .+...             .....+ +.+.+
T Consensus        33 a~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~~~~l~~l~~~~~~~----~~~~~-------------~~~~~l~~~~~~   95 (168)
T d1pjca1          33 GKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGSR----VELLY-------------SNSAEIETAVAE   95 (168)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGG----SEEEE-------------CCHHHHHHHHHT
T ss_pred             cEEEEECCChHHHHHHHHHhhCCCEEEEEeCcHHHHHHHHHhhccc----ceeeh-------------hhhhhHHHhhcc
Confidence            7999999999999999999999999999999999887654432211    00000             000011 45789


Q ss_pred             ccEEEEcccCCHHHHHH-HHHHHHHhCCCCcEEEEcC
Q psy9056         300 ADMVIEAVFEDINIKHQ-VIKEIEAVVPPHCVVATNT  335 (359)
Q Consensus       300 aD~Vi~avp~~~~~k~~-v~~~l~~~~~~~~ii~s~t  335 (359)
                      +|+||-++-..-.--.. +-+++.+.++++.+|++.+
T Consensus        96 aDivI~aalipG~~aP~lIt~~mv~~Mk~GSVIVDva  132 (168)
T d1pjca1          96 ADLLIGAVLVPGRRAPILVPASLVEQMRTGSVIVDVA  132 (168)
T ss_dssp             CSEEEECCCCTTSSCCCCBCHHHHTTSCTTCEEEETT
T ss_pred             CcEEEEeeecCCcccCeeecHHHHhhcCCCcEEEEee
Confidence            99999887321110011 2255677789999998754

>d1qmga2 c.2.1.6 (A:82-307) Class II ketol-acid reductoisomerase (KARI) {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Class II ketol-acid reductoisomerase (KARI)
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=97.39  E-value=0.0001  Score=62.56  Aligned_cols=101  Identities=10%  Similarity=0.100  Sum_probs=65.6

Q ss_pred             CccEEEEECCCcchHHHHHHHHHCC------CeeEEe-cCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccc
Q psy9056         219 PVKTVAVLGAGLMGAGIAHVTVDKG------YNTIVK-DSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGT  291 (359)
Q Consensus       219 ~~~kI~IIG~G~mG~~iA~~l~~~G------~~V~l~-d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~  291 (359)
                      -+|+|+|||.|+.|.+-|..|..+|      ..|++- ..+....+++.           +.|...        ......
T Consensus        43 g~KkIaViGYGsQG~AhAlNLrDSG~~~~sgv~V~VGLr~gs~S~~kA~-----------~dGf~v--------~~~~v~  103 (226)
T d1qmga2          43 GIKQIGVIGWGSQAPAQAQNLKDSLTEAKSDVVVKIGLRKGSNSFAEAR-----------AAGFSE--------ENGTLG  103 (226)
T ss_dssp             TCSEEEEECCSSHHHHHHHHHHHHHHHTTCCCEEEEEECTTCSCHHHHH-----------HTTCCG--------GGTCEE
T ss_pred             CCCEEEEEEeccHHHHHHHhChhhcccccCCceEEEEeCCCChhHHHHH-----------HcCCcc--------CCCccc
Confidence            3589999999999999999999966      445443 22212222221           111100        011122


Q ss_pred             cCcCCCCCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCcHH
Q psy9056         292 LSYDPFKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPIT  341 (359)
Q Consensus       292 ~~~~~l~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~  341 (359)
                      +-.|+++.+|+|++.+|+..  ..+++++|.++++++..+. .+-|..+.
T Consensus       104 ~v~EAv~~ADiVmiLlPDe~--Q~~vy~~I~p~Lk~G~~L~-FaHGFnI~  150 (226)
T d1qmga2         104 DMWETISGSDLVLLLISDSA--QADNYEKVFSHMKPNSILG-LSHGFLLG  150 (226)
T ss_dssp             EHHHHHHTCSEEEECSCHHH--HHHHHHHHHHHSCTTCEEE-ESSSHHHH
T ss_pred             CHHHHHhhCCEEEEecchHH--HHHHHHHHHHhcCCCceee-ecchhhhh
Confidence            22367899999999999877  4488999999999999875 34455553

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=97.38  E-value=0.00035  Score=57.22  Aligned_cols=40  Identities=18%  Similarity=0.120  Sum_probs=36.4

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCC-eeEEecCCHHHHHHHH
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGY-NTIVKDSFEKGLARGL  260 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~-~V~l~d~~~~~l~~~~  260 (359)
                      ++|.|+|+|-.+.+++..|.+.|. +|.+++|++++.+...
T Consensus        18 ~~vlIlGaGGaarai~~aL~~~g~~~I~I~nR~~~ka~~L~   58 (167)
T d1npya1          18 AKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNVKTGQYLA   58 (167)
T ss_dssp             SCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCHHHHHHHH
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCCCEEEEecccHHHHHHHH
Confidence            789999999999999999999997 8999999999877644

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=97.29  E-value=0.00033  Score=57.51  Aligned_cols=96  Identities=10%  Similarity=0.019  Sum_probs=63.3

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CCCCC
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DPFKN  299 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~l~~  299 (359)
                      ++|.|+|+|-.+.+++..|.+.|.+|++++|+.++.+...+.+.+       .+            .+...+.. .....
T Consensus        19 k~vlIlGaGGaarai~~al~~~g~~i~I~nRt~~ka~~l~~~~~~-------~~------------~~~~~~~~~~~~~~   79 (170)
T d1nyta1          19 LRILLIGAGGASRGVLLPLLSLDCAVTITNRTVSRAEELAKLFAH-------TG------------SIQALSMDELEGHE   79 (170)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHTGG-------GS------------SEEECCSGGGTTCC
T ss_pred             CEEEEECCcHHHHHHHHHhcccceEEEeccchHHHHHHHHHHHhh-------cc------------cccccccccccccc
Confidence            789999999999999999999999999999999987765543221       01            11111111 23467


Q ss_pred             ccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCC
Q psy9056         300 ADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSA  337 (359)
Q Consensus       300 aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~  337 (359)
                      +|+||.|+|-...-  +....-...++++.++.+....
T Consensus        80 ~dliIN~Tp~G~~~--~~~~~~~~~~~~~~~v~D~vY~  115 (170)
T d1nyta1          80 FDLIINATSSGISG--DIPAIPSSLIHPGIYCYDMFYQ  115 (170)
T ss_dssp             CSEEEECCSCGGGT--CCCCCCGGGCCTTCEEEESCCC
T ss_pred             cceeecccccCccc--CCCCCcHHHhccCcEEEEeecC
Confidence            89999999754421  1100012346777887766543

>d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Virulence factor MviM
species: Escherichia coli [TaxId: 562]

Probab=97.29  E-value=0.00048  Score=55.94  Aligned_cols=77  Identities=10%  Similarity=-0.001  Sum_probs=50.0

Q ss_pred             EEEEECCCcchHHH-HHHHHHC-CCee-EEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcC-CC
Q psy9056         222 TVAVLGAGLMGAGI-AHVTVDK-GYNT-IVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYD-PF  297 (359)
Q Consensus       222 kI~IIG~G~mG~~i-A~~l~~~-G~~V-~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~l  297 (359)
                      ||+|||+|.||... ...+... +++| .++|+++++.+...+..                       ++.+.++++ .+
T Consensus         3 ri~iIG~G~~g~~~~~~~l~~~~~~~i~~v~d~~~~~~~~~~~~~-----------------------~~~~~~~~~~l~   59 (164)
T d1tlta1           3 RIGVVGLGGIAQKAWLPVLAAASDWTLQGAWSPTRAKALPICESW-----------------------RIPYADSLSSLA   59 (164)
T ss_dssp             EEEEECCSTHHHHTHHHHHHSCSSEEEEEEECSSCTTHHHHHHHH-----------------------TCCBCSSHHHHH
T ss_pred             EEEEEcCCHHHHHHHHHHHHhCCCcEEEEEEechhHhhhhhhhcc-----------------------cccccccchhhh
Confidence            79999999999864 4555544 5564 57899988766543321                       122333432 34


Q ss_pred             CCccEEEEcccCCHHHHHHHHHHHHH
Q psy9056         298 KNADMVIEAVFEDINIKHQVIKEIEA  323 (359)
Q Consensus       298 ~~aD~Vi~avp~~~~~k~~v~~~l~~  323 (359)
                      .+.|+|++|+|.+...  .+.....+
T Consensus        60 ~~~D~V~I~tp~~~h~--~~~~~al~   83 (164)
T d1tlta1          60 ASCDAVFVHSSTASHF--DVVSTLLN   83 (164)
T ss_dssp             TTCSEEEECSCTTHHH--HHHHHHHH
T ss_pred             hhcccccccccchhcc--cccccccc
Confidence            7899999999988754  55544443

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=97.28  E-value=0.00022  Score=58.71  Aligned_cols=72  Identities=17%  Similarity=0.215  Sum_probs=53.4

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhccccc-ccCcCCCCC
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVG-TLSYDPFKN  299 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~l~~  299 (359)
                      ++|.|+|+|-.+.+++..|...+-+|++++|+.++++...+.+...       +            .+.. ..+...+.+
T Consensus        19 k~vlIlGaGGaarai~~aL~~~~~~i~I~nR~~~~a~~l~~~~~~~-------~------------~~~~~~~~~~~~~~   79 (171)
T d1p77a1          19 QHVLILGAGGATKGVLLPLLQAQQNIVLANRTFSKTKELAERFQPY-------G------------NIQAVSMDSIPLQT   79 (171)
T ss_dssp             CEEEEECCSHHHHTTHHHHHHTTCEEEEEESSHHHHHHHHHHHGGG-------S------------CEEEEEGGGCCCSC
T ss_pred             CEEEEECCcHHHHHHHHHHcccCceeeeccchHHHHHHHHHHHhhc-------c------------ccchhhhccccccc
Confidence            7899999999999999999998889999999999888765543311       0            1111 122235788


Q ss_pred             ccEEEEcccCCH
Q psy9056         300 ADMVIEAVFEDI  311 (359)
Q Consensus       300 aD~Vi~avp~~~  311 (359)
                      +|+||-|+|...
T Consensus        80 ~diiIN~tp~g~   91 (171)
T d1p77a1          80 YDLVINATSAGL   91 (171)
T ss_dssp             CSEEEECCCC--
T ss_pred             cceeeecccccc
Confidence            999999998765

>d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=97.19  E-value=0.00077  Score=52.70  Aligned_cols=78  Identities=19%  Similarity=0.285  Sum_probs=54.5

Q ss_pred             cEEEEECC-CcchHHHHHHHHHCCCeeEEe-cCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcCCCC
Q psy9056         221 KTVAVLGA-GLMGAGIAHVTVDKGYNTIVK-DSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPFK  298 (359)
Q Consensus       221 ~kI~IIG~-G~mG~~iA~~l~~~G~~V~l~-d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~  298 (359)
                      .||+|+|+ |.||..++..+.+.|+++..- |.+.                                        .+.+.
T Consensus         1 mki~i~G~~GrMG~~i~~~~~~~~~~l~~~id~~~----------------------------------------~~~~~   40 (128)
T d1vm6a3           1 MKYGIVGYSGRMGQEIQKVFSEKGHELVLKVDVNG----------------------------------------VEELD   40 (128)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEEETTE----------------------------------------EEECS
T ss_pred             CEEEEECCCCHHHHHHHHHHhcCCCeEEEEECCCc----------------------------------------HHHhc
Confidence            37999996 999999999999999987543 3221                                        13467


Q ss_pred             CccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCcHHHH
Q psy9056         299 NADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPITKI  343 (359)
Q Consensus       299 ~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~l  343 (359)
                      ++|+||+-...+.  ....++...++   +.-+++.|+|++-+++
T Consensus        41 ~~DVvIDFS~p~~--~~~~l~~~~~~---~~p~ViGTTG~~~~~~   80 (128)
T d1vm6a3          41 SPDVVIDFSSPEA--LPKTVDLCKKY---RAGLVLGTTALKEEHL   80 (128)
T ss_dssp             CCSEEEECSCGGG--HHHHHHHHHHH---TCEEEECCCSCCHHHH
T ss_pred             cCCEEEEecCHHH--HHHHHHHHHhc---CCCEEEEcCCCCHHHH
Confidence            8999999774343  34555544443   5567788999886543

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.15  E-value=0.00046  Score=56.93  Aligned_cols=77  Identities=16%  Similarity=0.127  Sum_probs=54.1

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcCCCCCc
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPFKNA  300 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~a  300 (359)
                      ++|.|+|+|-.+.+++..|.+.| +|++++|+.++.+...+.+........             ...+....-.....++
T Consensus        19 k~vlIlGaGG~arai~~aL~~~~-~i~I~nR~~~ka~~l~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~   84 (177)
T d1nvta1          19 KNIVIYGAGGAARAVAFELAKDN-NIIIANRTVEKAEALAKEIAEKLNKKF-------------GEEVKFSGLDVDLDGV   84 (177)
T ss_dssp             CEEEEECCSHHHHHHHHHHTSSS-EEEEECSSHHHHHHHHHHHHHHHTCCH-------------HHHEEEECTTCCCTTC
T ss_pred             CEEEEECCcHHHHHHHHHHcccc-ceeeehhhhhHHHHHHHHHHHhhchhh-------------hhhhhhhhhhhccchh
Confidence            78999999999999999998777 899999999998887766543221100             0011111112456788


Q ss_pred             cEEEEcccCCH
Q psy9056         301 DMVIEAVFEDI  311 (359)
Q Consensus       301 D~Vi~avp~~~  311 (359)
                      |++|.|+|...
T Consensus        85 dliIn~tp~g~   95 (177)
T d1nvta1          85 DIIINATPIGM   95 (177)
T ss_dssp             CEEEECSCTTC
T ss_pred             hhhccCCcccc
Confidence            99999998543

>d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=97.07  E-value=0.00027  Score=56.68  Aligned_cols=95  Identities=12%  Similarity=0.173  Sum_probs=57.7

Q ss_pred             ccEEEEECC-CcchHHHHHHHHHC-CC---eeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhccccc--cc
Q psy9056         220 VKTVAVLGA-GLMGAGIAHVTVDK-GY---NTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVG--TL  292 (359)
Q Consensus       220 ~~kI~IIG~-G~mG~~iA~~l~~~-G~---~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~--~~  292 (359)
                      |+||+|||+ |++|..+...+..+ .+   +++.+..+...-                 ..+.     .....+..  ..
T Consensus         1 MkkVaIvGATG~VGqeli~~Ll~~~~~p~~~l~~~~ss~s~g-----------------~~~~-----~~~~~~~~~~~~   58 (146)
T d1t4ba1           1 MQNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQLGQ-----------------AAPS-----FGGTTGTLQDAF   58 (146)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSSTTS-----------------BCCG-----GGTCCCBCEETT
T ss_pred             CcEEEEECCccHHHHHHHHHHHhCCCCCeeEEEEeecccccc-----------------cccc-----ccCCceeeeccc
Confidence            679999998 99999999876665 33   566665443210                 0000     00001111  11


Q ss_pred             CcCCCCCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCc
Q psy9056         293 SYDPFKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIP  339 (359)
Q Consensus       293 ~~~~l~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~  339 (359)
                      +.+.+.++|++|.|+|.+.  -+.+...+.+. +.+++|++++|...
T Consensus        59 ~~~~~~~~DivF~a~~~~~--s~~~~~~~~~~-g~~~~VID~Ss~fR  102 (146)
T d1t4ba1          59 DLEALKALDIIVTCQGGDY--TNEIYPKLRES-GWQGYWIDAASSLR  102 (146)
T ss_dssp             CHHHHHTCSEEEECSCHHH--HHHHHHHHHHT-TCCCEEEECSSTTT
T ss_pred             chhhhhcCcEEEEecCchH--HHHhhHHHHhc-CCCeecccCCcccc
Confidence            2234689999999998665  44666666543 55678889988654

>d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM0312
species: Thermotoga maritima [TaxId: 2336]

Probab=97.04  E-value=0.0016  Score=53.56  Aligned_cols=96  Identities=10%  Similarity=0.101  Sum_probs=58.3

Q ss_pred             cEEEEECCCcchHHH-HHHHHHCC--CeeE-EecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcCC
Q psy9056         221 KTVAVLGAGLMGAGI-AHVTVDKG--YNTI-VKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDP  296 (359)
Q Consensus       221 ~kI~IIG~G~mG~~i-A~~l~~~G--~~V~-l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  296 (359)
                      -||+|||+|.+|..+ ...+.+.+  ++|+ ++|+++++.+...+...                      .....++++.
T Consensus         4 irigiIG~G~~g~~~h~~~l~~~~~~~~i~~v~d~~~~~~~~~~~~~~----------------------~~~~~~~~~e   61 (181)
T d1zh8a1           4 IRLGIVGCGIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFAKMVG----------------------NPAVFDSYEE   61 (181)
T ss_dssp             EEEEEECCSHHHHHTHHHHHHTTTTTEEEEEEECSSHHHHHHHHHHHS----------------------SCEEESCHHH
T ss_pred             cEEEEEcCCHHHHHHHHHHHHhCCCCeEEEEEEeccHhhhhhhhcccc----------------------ccceeeeeec
Confidence            389999999999874 66666543  3554 78999988665433211                      1223345532


Q ss_pred             -C--CCccEEEEcccCCHHHHHHHHHHHHHhCCCCc-EEEEcCCCCcHHHH
Q psy9056         297 -F--KNADMVIEAVFEDINIKHQVIKEIEAVVPPHC-VVATNTSAIPITKI  343 (359)
Q Consensus       297 -l--~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~-ii~s~ts~~~~~~l  343 (359)
                       +  .+.|+|++|+|.+...  ++.....+.   +. |++--.-+...+++
T Consensus        62 ll~~~~id~v~I~tp~~~h~--~~~~~al~~---gk~V~~EKPl~~~~~e~  107 (181)
T d1zh8a1          62 LLESGLVDAVDLTLPVELNL--PFIEKALRK---GVHVICEKPISTDVETG  107 (181)
T ss_dssp             HHHSSCCSEEEECCCGGGHH--HHHHHHHHT---TCEEEEESSSSSSHHHH
T ss_pred             cccccccceeeccccccccc--ccccccccc---chhhhcCCCCcCCHHHH
Confidence             3  5689999999987753  555554443   33 44433334445443

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=96.88  E-value=0.00042  Score=61.19  Aligned_cols=60  Identities=20%  Similarity=0.284  Sum_probs=43.9

Q ss_pred             hhhhhcChhhHHHHHhHhhhhhhhhcCCCCCCCCccEEEEECCCcchHHHHHHHHHCCCeeEEecCCH
Q psy9056         186 FSQLAMTPQSKGLMGLFRAQTECKKNRLGKPQTPVKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFE  253 (359)
Q Consensus       186 ~~~~~~s~~~~~~~~af~~k~~~~~~~~~~~~~~~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~  253 (359)
                      +..|.+.++..+.++.....-+    +    ...-+||.|||+|..|.+.|..|+++|++|+++|.++
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~----~----~~~pkkV~IIGaG~aGLsaA~~L~~~G~~V~vlE~~~   63 (370)
T d2iida1           4 LAECFQENDYEEFLEIARNGLK----A----TSNPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASE   63 (370)
T ss_dssp             TGGGGCCTTHHHHHHHHHHCSC----C----CSSCCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred             hHhhcCCccHHHHHHHHhcCCC----C----CCCCCeEEEECCCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            4567788885554443322211    1    1222699999999999999999999999999999875

>d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glucose-fructose oxidoreductase, N-terminal domain
species: Zymomonas mobilis [TaxId: 542]

Probab=96.87  E-value=0.0027  Score=54.08  Aligned_cols=75  Identities=9%  Similarity=0.007  Sum_probs=48.4

Q ss_pred             cEEEEECCCcchHH-HHHHHHHC-CCeeE-EecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcCC-
Q psy9056         221 KTVAVLGAGLMGAG-IAHVTVDK-GYNTI-VKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDP-  296 (359)
Q Consensus       221 ~kI~IIG~G~mG~~-iA~~l~~~-G~~V~-l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-  296 (359)
                      -||+|||+|.||.. +...+... +.+|+ ++|+++++++...+..+           +..       ..+...+|++. 
T Consensus        34 iriaiIG~G~~~~~~~~~~~~~~~~~~ivav~d~~~~~a~~~~~~~~-----------i~~-------~~~~~~~d~~el   95 (221)
T d1h6da1          34 FGYAIVGLGKYALNQILPGFAGCQHSRIEALVSGNAEKAKIVAAEYG-----------VDP-------RKIYDYSNFDKI   95 (221)
T ss_dssp             EEEEEECCSHHHHHTHHHHTTTCSSEEEEEEECSCHHHHHHHHHHTT-----------CCG-------GGEECSSSGGGG
T ss_pred             EEEEEEcCcHHHHHHHHHHHHhCCCceEEEEecCCHHHHHHHHHhhc-----------ccc-------ccccccCchhhh
Confidence            38999999999975 44455444 56665 88999998776543221           100       11223455533 


Q ss_pred             C--CCccEEEEcccCCHHH
Q psy9056         297 F--KNADMVIEAVFEDINI  313 (359)
Q Consensus       297 l--~~aD~Vi~avp~~~~~  313 (359)
                      +  .+.|+|++|+|.+...
T Consensus        96 l~~~~iD~V~I~tp~~~H~  114 (221)
T d1h6da1          96 AKDPKIDAVYIILPNSLHA  114 (221)
T ss_dssp             GGCTTCCEEEECSCGGGHH
T ss_pred             cccccceeeeeccchhhhh
Confidence            3  4689999999987753

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=96.84  E-value=0.002  Score=48.90  Aligned_cols=34  Identities=26%  Similarity=0.433  Sum_probs=32.2

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCCeeEEecCCHH
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEK  254 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~  254 (359)
                      .||+|+|+|..|.-++....+-|++|+++|.+++
T Consensus        12 ~kigIlGgGQL~rMla~aA~~lG~~v~v~d~~~~   45 (111)
T d1kjqa2          12 TRVMLLGSGELGKEVAIECQRLGVEVIAVDRYAD   45 (111)
T ss_dssp             CEEEEESCSHHHHHHHHHHHTTTCEEEEEESSTT
T ss_pred             CEEEEEeCCHHHHHHHHHHHHCCCEEEEEcCCCC
Confidence            5899999999999999999999999999999875

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=96.82  E-value=0.0012  Score=48.81  Aligned_cols=37  Identities=27%  Similarity=0.506  Sum_probs=32.6

Q ss_pred             CCccEEEEECCCcch-HHHHHHHHHCCCeeEEecCCHH
Q psy9056         218 TPVKTVAVLGAGLMG-AGIAHVTVDKGYNTIVKDSFEK  254 (359)
Q Consensus       218 ~~~~kI~IIG~G~mG-~~iA~~l~~~G~~V~l~d~~~~  254 (359)
                      .++++|-|||.|-.| +++|..|.+.|++|..+|....
T Consensus         6 ~~~~~ihfiGigG~GMs~LA~~L~~~G~~VsGSD~~~~   43 (96)
T d1p3da1           6 RRVQQIHFIGIGGAGMSGIAEILLNEGYQISGSDIADG   43 (96)
T ss_dssp             TTCCEEEEETTTSTTHHHHHHHHHHHTCEEEEEESCCS
T ss_pred             hhCCEEEEEEECHHHHHHHHHHHHhCCCEEEEEeCCCC
Confidence            457899999999999 5669999999999999998753

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=96.81  E-value=0.00032  Score=51.62  Aligned_cols=34  Identities=26%  Similarity=0.419  Sum_probs=31.6

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCCeeEEecCCHH
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEK  254 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~  254 (359)
                      +||.|+|+|..|.++|..|.+.|.+|++||.++.
T Consensus         6 K~v~ViGlG~sG~s~a~~L~~~g~~v~~~D~~~~   39 (93)
T d2jfga1           6 KNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMT   39 (93)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCCEEEESSSS
T ss_pred             CEEEEEeECHHHHHHHHHHHHCCCEEEEeeCCcC
Confidence            6899999999999999999999999999997653

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=96.79  E-value=0.00043  Score=59.15  Aligned_cols=32  Identities=34%  Similarity=0.531  Sum_probs=30.6

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCCeeEEecCC
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSF  252 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~  252 (359)
                      +||.|||+|..|.+.|..|+++|++|+++|++
T Consensus         7 ~kVvVIGaGiaGl~~A~~L~~~G~~V~vier~   38 (268)
T d1c0pa1           7 KRVVVLGSGVIGLSSALILARKGYSVHILARD   38 (268)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CcEEEECccHHHHHHHHHHHHCCCCEEEEeCC
Confidence            68999999999999999999999999999975

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=96.78  E-value=0.00028  Score=58.52  Aligned_cols=113  Identities=12%  Similarity=0.053  Sum_probs=64.7

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHH-------HHhhccCChHHHHhhhcccccccC
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDG-------AVKRKKMSALDRDRYLASLVGTLS  293 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~-------~~~~~~~~~~~~~~~~~~i~~~~~  293 (359)
                      .+|.|||+|..|..-+......|-+|.++|.+++++++..+.....+.-       ....+.+......++..  .....
T Consensus        30 a~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~~~~~~l~~l~~~~i~~~~~~~~~~~~~~gyA~~~s~~~~~--~~~~~  107 (183)
T d1l7da1          30 ARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRK--KQAEA  107 (183)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHHHTTCEECCC-----------------------C--CHHHH
T ss_pred             cEEEEEcCcHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhhcceEEEeccccccccccccchhhcCHHHHH--HHHHH
Confidence            6999999999999999999999999999999999877765422111100       00000000000000000  00000


Q ss_pred             c-CCCCCccEEEEcccCCHHHHHH-HHHHHHHhCCCCcEEEEcC
Q psy9056         294 Y-DPFKNADMVIEAVFEDINIKHQ-VIKEIEAVVPPHCVVATNT  335 (359)
Q Consensus       294 ~-~~l~~aD~Vi~avp~~~~~k~~-v~~~l~~~~~~~~ii~s~t  335 (359)
                      + +.+.++|+||-++-..-.--.. +-+++.+.++++.+|++.+
T Consensus       108 l~~~l~~aDlVI~talipG~~aP~lit~~mv~~Mk~GSVIVDva  151 (183)
T d1l7da1         108 VLKELVKTDIAITTALIPGKPAPVLITEEMVTKMKPGSVIIDLA  151 (183)
T ss_dssp             HHHHHTTCSEEEECCCCTTSCCCCCSCHHHHTTSCTTCEEEETT
T ss_pred             HHHHHHhhhhheeeeecCCcccceeehHHHHHhcCCCcEEEEEe
Confidence            1 3478999999876221100001 2255677889999998754

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.76  E-value=0.00052  Score=57.63  Aligned_cols=39  Identities=31%  Similarity=0.401  Sum_probs=36.2

Q ss_pred             CCccEEEEECC-CcchHHHHHHHHHCCCeeEEecCCHHHH
Q psy9056         218 TPVKTVAVLGA-GLMGAGIAHVTVDKGYNTIVKDSFEKGL  256 (359)
Q Consensus       218 ~~~~kI~IIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~l  256 (359)
                      |.|+||.|+|+ |.+|+.++..|+++||+|++++|+++++
T Consensus         1 m~~kkIlV~GatG~iG~~v~~~Ll~~g~~V~~~~R~~~~~   40 (205)
T d1hdoa_           1 MAVKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRL   40 (205)
T ss_dssp             CCCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGS
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEEcChhhc
Confidence            67899999995 9999999999999999999999998764

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=96.74  E-value=0.0018  Score=47.07  Aligned_cols=66  Identities=18%  Similarity=0.178  Sum_probs=45.7

Q ss_pred             cEEEEECCCcchH-HHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcCCCCC
Q psy9056         221 KTVAVLGAGLMGA-GIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPFKN  299 (359)
Q Consensus       221 ~kI~IIG~G~mG~-~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~  299 (359)
                      +||-+||.|-+|. ++|..+.+.|++|...|+++...-+          ...+.|.           .+....+.+.+.+
T Consensus         2 ~~ihfiGIgG~GMs~LA~~L~~~G~~VsGSD~~~~~~t~----------~L~~~Gi-----------~i~~gh~~~~i~~   60 (89)
T d1j6ua1           2 MKIHFVGIGGIGMSAVALHEFSNGNDVYGSNIEETERTA----------YLRKLGI-----------PIFVPHSADNWYD   60 (89)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEECSSCCHHHH----------HHHHTTC-----------CEESSCCTTSCCC
T ss_pred             cEEEEEeECHHHHHHHHHHHHhCCCeEEEEeCCCChhHH----------HHHHCCC-----------eEEeeecccccCC
Confidence            4799999999897 7899999999999999998643111          1112221           1333344456788


Q ss_pred             ccEEEEcc
Q psy9056         300 ADMVIEAV  307 (359)
Q Consensus       300 aD~Vi~av  307 (359)
                      +|+||.+-
T Consensus        61 ~d~vV~Ss   68 (89)
T d1j6ua1          61 PDLVIKTP   68 (89)
T ss_dssp             CSEEEECT
T ss_pred             CCEEEEec
Confidence            99998753

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=96.72  E-value=0.00034  Score=49.75  Aligned_cols=35  Identities=23%  Similarity=0.244  Sum_probs=32.8

Q ss_pred             ccEEEEECCCcchHHHHHHHHHCCCeeEEecCCHH
Q psy9056         220 VKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEK  254 (359)
Q Consensus       220 ~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~  254 (359)
                      ||+|+|+|+|..|.-++....+-|++|.++|.+++
T Consensus         1 ~k~vgIlG~GQLgrMl~~Aa~~LG~~v~vldp~~~   35 (78)
T d3etja2           1 MKQVCVLGNGQLGRMLRQAGEPLGIAVWPVGLDAE   35 (78)
T ss_dssp             CEEEEEEBCSHHHHHHHHHHGGGTEEEEEECTTSC
T ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCEEEEEcCCCC
Confidence            68999999999999999999999999999998764

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=96.72  E-value=0.0039  Score=49.61  Aligned_cols=102  Identities=11%  Similarity=0.082  Sum_probs=59.9

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc--CCCC
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY--DPFK  298 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~l~  298 (359)
                      ..|-|+|.|.+|..++..|...|++|+++|.+++............ ....-.|..++            ...+  ..+.
T Consensus         4 nHiII~G~g~~g~~l~~~L~~~~~~v~vId~d~~~~~~~~~~~~~~-~~~vi~Gd~~d------------~~~L~~a~i~   70 (153)
T d1id1a_           4 DHFIVCGHSILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLGD-NADVIPGDSND------------SSVLKKAGID   70 (153)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHCT-TCEEEESCTTS------------HHHHHHHTTT
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCEEEEeccchhHHHHHHHhhcC-CcEEEEccCcc------------hHHHHHhccc
Confidence            3589999999999999999999999999999987644332211100 00000011000            0001  2478


Q ss_pred             CccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCC
Q psy9056         299 NADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTS  336 (359)
Q Consensus       299 ~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts  336 (359)
                      ++|.||.+++++..-.. +...+....+.-.+++-..+
T Consensus        71 ~a~~vi~~~~~d~~n~~-~~~~~r~~~~~~~iia~~~~  107 (153)
T d1id1a_          71 RCRAILALSDNDADNAF-VVLSAKDMSSDVKTVLAVSD  107 (153)
T ss_dssp             TCSEEEECSSCHHHHHH-HHHHHHHHTSSSCEEEECSS
T ss_pred             cCCEEEEccccHHHHHH-HHHHHHHhCCCCceEEEEcC
Confidence            89999999987664322 22234444444346654433

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.67  E-value=0.015  Score=46.77  Aligned_cols=40  Identities=28%  Similarity=0.309  Sum_probs=36.3

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCC-eeEEecCCHHHHHHHH
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGY-NTIVKDSFEKGLARGL  260 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~-~V~l~d~~~~~l~~~~  260 (359)
                      .+|.|+|+|.+|...+..+...|. +|+++|+++++++.++
T Consensus        28 d~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~   68 (171)
T d1pl8a2          28 HKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAK   68 (171)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHH
T ss_pred             CEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHH
Confidence            589999999999999999999998 7999999999988654

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.62  E-value=0.0037  Score=47.26  Aligned_cols=79  Identities=14%  Similarity=0.095  Sum_probs=52.1

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhccccccc-Cc--CCC
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTL-SY--DPF  297 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~-~~--~~l  297 (359)
                      ++|.|||.|.+|..-+..|.+.|.+|++++.....-.          ....+.+            ++.... .+  +.+
T Consensus        13 k~vlVvG~G~va~~ka~~ll~~ga~v~v~~~~~~~~~----------~~~~~~~------------~i~~~~~~~~~~dl   70 (113)
T d1pjqa1          13 RDCLIVGGGDVAERKARLLLEAGARLTVNALTFIPQF----------TVWANEG------------MLTLVEGPFDETLL   70 (113)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTBEEEEEESSCCHHH----------HHHHTTT------------SCEEEESSCCGGGG
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEEeccCChHH----------HHHHhcC------------CceeeccCCCHHHh
Confidence            7999999999999999999999999999987654211          1111111            122211 22  468


Q ss_pred             CCccEEEEcccCCHHHHHHHHHHHH
Q psy9056         298 KNADMVIEAVFEDINIKHQVIKEIE  322 (359)
Q Consensus       298 ~~aD~Vi~avp~~~~~k~~v~~~l~  322 (359)
                      .++++|+.|+. +..+-..+++...
T Consensus        71 ~~~~lv~~at~-d~~~n~~i~~~a~   94 (113)
T d1pjqa1          71 DSCWLAIAATD-DDTVNQRVSDAAE   94 (113)
T ss_dssp             TTCSEEEECCS-CHHHHHHHHHHHH
T ss_pred             CCCcEEeecCC-CHHHHHHHHHHHH
Confidence            88999998865 4444445554433

>d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Diaminopimelic acid dehydrogenase (DAPDH)
species: Corynebacterium glutamicum [TaxId: 1718]

Probab=96.61  E-value=0.0012  Score=53.85  Aligned_cols=65  Identities=9%  Similarity=0.138  Sum_probs=44.8

Q ss_pred             cEEEEECCCcchHHHHHHHHHC-CCee-EEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CCC
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDK-GYNT-IVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DPF  297 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~-G~~V-~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~l  297 (359)
                      -||+|||+|.||...+..+.+. ++++ .++|++++....                           .......++ +..
T Consensus         4 irvgiiG~G~ig~~~~~~l~~~~~~elvav~~~~~~~~~~---------------------------~~~~~~~~~~~~~   56 (170)
T d1f06a1           4 IRVAIVGYGNLGRSVEKLIAKQPDMDLVGIFSRRATLDTK---------------------------TPVFDVADVDKHA   56 (170)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTCSSEEEEEEEESSSCCSSS---------------------------SCEEEGGGGGGTT
T ss_pred             ceEEEECChHHHHHHHHHHHhCCCcEEEEEEecccccccc---------------------------cccccchhhhhhc
Confidence            4799999999999998888765 4554 466877542110                           012233344 456


Q ss_pred             CCccEEEEcccCCHH
Q psy9056         298 KNADMVIEAVFEDIN  312 (359)
Q Consensus       298 ~~aD~Vi~avp~~~~  312 (359)
                      .+.|+|++|+|....
T Consensus        57 ~~~D~Vvi~tp~~~h   71 (170)
T d1f06a1          57 DDVDVLFLCMGSATD   71 (170)
T ss_dssp             TTCSEEEECSCTTTH
T ss_pred             cccceEEEeCCCccc
Confidence            789999999998874

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=96.57  E-value=0.0029  Score=52.48  Aligned_cols=46  Identities=15%  Similarity=0.166  Sum_probs=40.1

Q ss_pred             CccEEEEECC-CcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHH
Q psy9056         219 PVKTVAVLGA-GLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIK  264 (359)
Q Consensus       219 ~~~kI~IIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~  264 (359)
                      +=|+|-|.|+ |.+|..+|..|++.|.+|++.+|++++++...+.+.
T Consensus        22 ~gK~vlItGasgGIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~   68 (191)
T d1luaa1          22 KGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAADSVN   68 (191)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHhhccchhhcccchHHHHHHHHHHH
Confidence            3478999994 999999999999999999999999999887766554

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=96.57  E-value=0.0053  Score=50.25  Aligned_cols=40  Identities=30%  Similarity=0.251  Sum_probs=36.0

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCC-eeEEecCCHHHHHHHH
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGY-NTIVKDSFEKGLARGL  260 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~-~V~l~d~~~~~l~~~~  260 (359)
                      .+|.|+|+|.+|...+..+...|. +|++.|+++++++.++
T Consensus        30 ~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~   70 (182)
T d1vj0a2          30 KTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAE   70 (182)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHH
T ss_pred             CEEEEECCCccchhheecccccccccccccccccccccccc
Confidence            689999999999999999999997 7999999999887654

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.56  E-value=0.00064  Score=56.03  Aligned_cols=34  Identities=26%  Similarity=0.375  Sum_probs=31.6

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCC-eeEEecCCHH
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGY-NTIVKDSFEK  254 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~-~V~l~d~~~~  254 (359)
                      +||+|||+|..|...|..|+++|+ +|+++++++.
T Consensus         5 ~kVaIIGaGpaGl~aA~~l~~~G~~~V~v~E~~~~   39 (196)
T d1gtea4           5 AKIALLGAGPASISCASFLARLGYSDITIFEKQEY   39 (196)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSS
T ss_pred             CEEEEECChHHHHHHHHHHHHCCCCeEEEEEecCc
Confidence            699999999999999999999999 5999998864

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=96.55  E-value=0.00043  Score=57.41  Aligned_cols=41  Identities=22%  Similarity=0.278  Sum_probs=36.7

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCC-eeEEecCCHHHHHHHHH
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGY-NTIVKDSFEKGLARGLG  261 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~-~V~l~d~~~~~l~~~~~  261 (359)
                      ++|.|+|+|-.|.+++..+.+.|. ++++++|+++++++...
T Consensus        19 k~vlIlGaGGaarai~~al~~~g~~~i~i~nR~~~~~~~~~~   60 (182)
T d1vi2a1          19 KTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALA   60 (182)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHH
T ss_pred             CEEEEECCcHHHHHHHHHHhhcCCceEeeeccchHHHHHHHH
Confidence            799999999999999999999997 79999999887776554

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=96.52  E-value=0.00072  Score=58.20  Aligned_cols=34  Identities=24%  Similarity=0.319  Sum_probs=32.0

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCCeeEEecCCHH
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEK  254 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~  254 (359)
                      +||.|||+|.-|.+.|..|+++|++|+++|++++
T Consensus         5 ~kV~IiGaG~aGl~~A~~L~~~G~~v~v~Er~~~   38 (265)
T d2voua1           5 DRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQ   38 (265)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence            6999999999999999999999999999998754

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.50  E-value=0.00067  Score=51.87  Aligned_cols=35  Identities=17%  Similarity=0.352  Sum_probs=32.7

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHH
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKG  255 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~  255 (359)
                      ++|.|||+|.+|.-+|..+.+.|.+|+++++.+.-
T Consensus        23 ~~v~IiGgG~ig~E~A~~l~~~G~~Vtlve~~~~i   57 (117)
T d1ebda2          23 KSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEI   57 (117)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSS
T ss_pred             CeEEEECCCccceeeeeeecccccEEEEEEeccee
Confidence            79999999999999999999999999999988754

>d1omoa_ c.2.1.13 (A:) Archaeal alanine dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Ornithine cyclodeaminase-like
domain: Archaeal alanine dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.49  E-value=0.002  Score=58.18  Aligned_cols=92  Identities=9%  Similarity=0.024  Sum_probs=64.8

Q ss_pred             ccEEEEECCCcchHHHHHHHHHC-C-CeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhccccc-ccCcCC
Q psy9056         220 VKTVAVLGAGLMGAGIAHVTVDK-G-YNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVG-TLSYDP  296 (359)
Q Consensus       220 ~~kI~IIG~G~mG~~iA~~l~~~-G-~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~  296 (359)
                      -++++|||+|.++..-+..+... . .+|.+|++++++.+......+..                    .+.. .+..++
T Consensus       125 ~~~l~iiGaG~QA~~~~~al~~~~~i~~i~v~~r~~e~~~~~~~~~~~~--------------------~~~~~~~~~~a  184 (320)
T d1omoa_         125 SSVFGFIGCGTQAYFQLEALRRVFDIGEVKAYDVREKAAKKFVSYCEDR--------------------GISASVQPAEE  184 (320)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHHHT--------------------TCCEEECCHHH
T ss_pred             ccEEEEecCcccHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHhc--------------------CCccccchhhh
Confidence            36899999999999998877653 3 38999999999888765543311                    1112 223356


Q ss_pred             CCCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCC
Q psy9056         297 FKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSA  337 (359)
Q Consensus       297 l~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~  337 (359)
                      +.+||+|+-|++....+    |+  .+.+++++.|....+.
T Consensus       185 ~~~aDiV~taT~s~~P~----~~--~~~l~~G~hv~~iGs~  219 (320)
T d1omoa_         185 ASRCDVLVTTTPSRKPV----VK--AEWVEEGTHINAIGAD  219 (320)
T ss_dssp             HTSSSEEEECCCCSSCC----BC--GGGCCTTCEEEECSCC
T ss_pred             hccccEEEEeccCcccc----cc--hhhcCCCCeEeecCCc
Confidence            78999999999876633    32  2457889988766553

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.49  E-value=0.00063  Score=52.62  Aligned_cols=35  Identities=20%  Similarity=0.346  Sum_probs=32.6

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHH
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKG  255 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~  255 (359)
                      +++.|||+|.+|.-+|..|++.|.+|+++++++.-
T Consensus        24 ~~~vIiG~G~ig~E~A~~l~~lG~~Vtii~~~~~~   58 (122)
T d1v59a2          24 KRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQI   58 (122)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             CeEEEECCCchHHHHHHHHHhhCcceeEEEecccc
Confidence            79999999999999999999999999999987743

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=96.49  E-value=0.0086  Score=48.19  Aligned_cols=41  Identities=22%  Similarity=0.206  Sum_probs=37.1

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHH
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLG  261 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~  261 (359)
                      .+|.|+|+|.+|...+..+...|.+|+++|+++++++.+++
T Consensus        28 ~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~~r~~~a~~   68 (170)
T d1e3ja2          28 TTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKN   68 (170)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred             CEEEEEcccccchhhHhhHhhhcccccccchHHHHHHHHHH
Confidence            58999999999999999999999999999999999876643

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

Probab=96.47  E-value=0.0037  Score=52.51  Aligned_cols=40  Identities=28%  Similarity=0.397  Sum_probs=36.5

Q ss_pred             ccEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHH
Q psy9056         220 VKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARG  259 (359)
Q Consensus       220 ~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~  259 (359)
                      =++|+|-|.|++|..+|..|.+.|..|+++|.+++.++..
T Consensus        27 gk~v~IqG~G~VG~~~A~~L~~~Gakvvv~d~d~~~~~~~   66 (201)
T d1c1da1          27 GLTVLVQGLGAVGGSLASLAAEAGAQLLVADTDTERVAHA   66 (201)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEecchHHHHHHH
Confidence            3799999999999999999999999999999999876653

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=96.45  E-value=0.0012  Score=54.65  Aligned_cols=37  Identities=27%  Similarity=0.379  Sum_probs=33.6

Q ss_pred             CCccEEEEECCCcchHHHHHHHHHCCCeeEEecCCHH
Q psy9056         218 TPVKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEK  254 (359)
Q Consensus       218 ~~~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~  254 (359)
                      ..-++|+|||+|.-|...|..+++.||+|++||.+++
T Consensus        41 ~~~k~V~IIGaGPAGL~AA~~la~~G~~Vtl~E~~~~   77 (179)
T d1ps9a3          41 VQKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSE   77 (179)
T ss_dssp             SSCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSS
T ss_pred             CCCcEEEEECccHHHHHHHHHHHhhccceEEEeccCc
Confidence            3348999999999999999999999999999998863

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=96.42  E-value=0.00084  Score=58.37  Aligned_cols=32  Identities=28%  Similarity=0.407  Sum_probs=30.1

Q ss_pred             EEEEECCCcchHHHHHHHHHCCCeeEEecCCH
Q psy9056         222 TVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFE  253 (359)
Q Consensus       222 kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~  253 (359)
                      .|.|||+|.+|.++|..|+++|++|+++|+++
T Consensus         6 DvvIIGaGi~Gls~A~~La~~G~~V~vlE~~~   37 (276)
T d1ryia1           6 EAVVIGGGIIGSAIAYYLAKENKNTALFESGT   37 (276)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            39999999999999999999999999999864

>d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=96.42  E-value=0.0035  Score=51.65  Aligned_cols=86  Identities=14%  Similarity=0.156  Sum_probs=48.0

Q ss_pred             ccEEEEECCCcchHHHHHHHHHCC-CeeEEe-cCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhh-cccccccCc-C
Q psy9056         220 VKTVAVLGAGLMGAGIAHVTVDKG-YNTIVK-DSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYL-ASLVGTLSY-D  295 (359)
Q Consensus       220 ~~kI~IIG~G~mG~~iA~~l~~~G-~~V~l~-d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~i~~~~~~-~  295 (359)
                      |-||+|.|.|.+|..+.+.+..+. .+|+.+ |+++.........      .....+. ........- ..+.+..+. +
T Consensus         1 MIKVaINGfGRIGR~v~Ral~~~~dievVaInd~~~~~~~~~~~~------~~~~~~~-~~~~~~~~~~~~i~v~g~~~~   73 (178)
T d1b7go1           1 MVNVAVNGYGTIGKRVADAIIKQPDMKLVGVAKTSPNYEAFIAHR------RGIRIYV-PQQSIKKFEESGIPVAGTVED   73 (178)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTCTTEEEEEEECSSCSHHHHHHHH------TTCCEEC-CGGGHHHHHTTTCCCCCCHHH
T ss_pred             CeEEEEECCCHHHHHHHHHHHhCCCCEEEEEECCCCcHHHHHhcc------cCcceec-cCccceeccccceecCCchhh
Confidence            569999999999999999998764 566554 6665432221110      0000011 111111111 123333333 2


Q ss_pred             CCCCccEEEEcccCCHH
Q psy9056         296 PFKNADMVIEAVFEDIN  312 (359)
Q Consensus       296 ~l~~aD~Vi~avp~~~~  312 (359)
                      ..+++|+||||+|....
T Consensus        74 ~~~~vDiViecTG~f~~   90 (178)
T d1b7go1          74 LIKTSDIVVDTTPNGVG   90 (178)
T ss_dssp             HHHHCSEEEECCSTTHH
T ss_pred             hhhcCCEEEECCCCcCC
Confidence            35689999999997553

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=96.41  E-value=0.00079  Score=51.48  Aligned_cols=35  Identities=31%  Similarity=0.472  Sum_probs=32.5

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHH
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKG  255 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~  255 (359)
                      ++|.|||+|.+|.-+|..+.+.|.+|+++++.+.-
T Consensus        22 ~~vvIiGgG~ig~E~A~~l~~~G~~Vtlve~~~~~   56 (116)
T d1gesa2          22 ERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDAP   56 (116)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             CEEEEECCChhhHHHHHHhhccccEEEEEeecchh
Confidence            68999999999999999999999999999998643

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=96.41  E-value=0.00091  Score=57.70  Aligned_cols=33  Identities=36%  Similarity=0.379  Sum_probs=31.3

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCCeeEEecCCH
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFE  253 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~  253 (359)
                      |||.|||+|.-|.+.|..|+++|++|+++|.++
T Consensus         2 KkV~IIGaG~aGL~aA~~La~~G~~V~vlE~~~   34 (373)
T d1seza1           2 KRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEG   34 (373)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTSCEEEEECSSS
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCEEEEeCCC
Confidence            789999999999999999999999999999764

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=96.39  E-value=0.013  Score=50.69  Aligned_cols=44  Identities=27%  Similarity=0.346  Sum_probs=36.8

Q ss_pred             cEEEEE-CC-CcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHH
Q psy9056         221 KTVAVL-GA-GLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIK  264 (359)
Q Consensus       221 ~kI~II-G~-G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~  264 (359)
                      |||++| |+ +-+|.++|..|++.|++|++.|++++.+++..+.++
T Consensus         1 KKValITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i~   46 (255)
T d1gega_           1 KKVALVTGAGQGIGKAIALRLVKDGFAVAIADYNDATAKAVASEIN   46 (255)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHH
T ss_pred             CCEEEEcCCccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHH
Confidence            577666 65 679999999999999999999999998887665443

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=96.38  E-value=0.00078  Score=51.68  Aligned_cols=34  Identities=15%  Similarity=0.363  Sum_probs=31.9

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCCeeEEecCCHH
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEK  254 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~  254 (359)
                      ++|.|||+|.+|.-+|..+++.|.+|+++++.+.
T Consensus        23 ~~v~IiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~   56 (117)
T d1onfa2          23 KKIGIVGSGYIAVELINVIKRLGIDSYIFARGNR   56 (117)
T ss_dssp             SEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSS
T ss_pred             CEEEEECCchHHHHHHHHHHhccccceeeehhcc
Confidence            7999999999999999999999999999998654

>d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Acetaldehyde dehydrogenase (acylating)
species: Pseudomonas sp. [TaxId: 306]

Probab=96.23  E-value=0.0078  Score=48.39  Aligned_cols=98  Identities=13%  Similarity=0.155  Sum_probs=52.2

Q ss_pred             cEEEEECCCcchHHH-HHHHHHCC-CeeEE-ecCCHHHHHHHHHHHHHhHHHHHhhccCC-hHHHHhhhcccccccCcCC
Q psy9056         221 KTVAVLGAGLMGAGI-AHVTVDKG-YNTIV-KDSFEKGLARGLGQIKTGLDGAVKRKKMS-ALDRDRYLASLVGTLSYDP  296 (359)
Q Consensus       221 ~kI~IIG~G~mG~~i-A~~l~~~G-~~V~l-~d~~~~~l~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~  296 (359)
                      -||||||+|.+|..+ ...+.+.. .+++. .+++++.......         .+.+... ....+.+.       +...
T Consensus         5 irvaIIGaG~ig~~~~~~~l~~~~~~el~avas~~~~~~~~~~a---------~~~~i~~~~~~~d~l~-------~~~~   68 (157)
T d1nvmb1           5 LKVAIIGSGNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGLARA---------QRMGVTTTYAGVEGLI-------KLPE   68 (157)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHCSSEEEEEEECSCTTCHHHHHH---------HHTTCCEESSHHHHHH-------HSGG
T ss_pred             cEEEEEcCcHHHHHHHHHHHhhCCcceEEEEEecchhccchhhh---------hhcCCcccccceeeee-------eccc
Confidence            389999999999964 45554443 35544 5887653211000         0111000 00000000       0112


Q ss_pred             CCCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCC
Q psy9056         297 FKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSA  337 (359)
Q Consensus       297 l~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~  337 (359)
                      ..+.|+||+|+|...+......-   ..+..+++++++++.
T Consensus        69 ~~~iDiVf~ATpag~h~~~~~~~---~aa~~G~~VID~s~a  106 (157)
T d1nvmb1          69 FADIDFVFDATSASAHVQNEALL---RQAKPGIRLIDLTPA  106 (157)
T ss_dssp             GGGEEEEEECSCHHHHHHHHHHH---HHHCTTCEEEECSTT
T ss_pred             ccccCEEEEcCCchhHHHhHHHH---HHHHcCCEEEEcccc
Confidence            46789999999976654333322   223678888888873

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.21  E-value=0.0011  Score=58.17  Aligned_cols=34  Identities=21%  Similarity=0.390  Sum_probs=32.0

Q ss_pred             EEEEECCCcchHHHHHHHHHCCCeeEEecCCHHH
Q psy9056         222 TVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKG  255 (359)
Q Consensus       222 kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~  255 (359)
                      +|.|||+|..|..+|..|+++|++|.++|++++.
T Consensus         4 ~V~IvGaGp~Gl~~A~~L~~~G~~v~vlE~~~~~   37 (292)
T d1k0ia1           4 QVAIIGAGPSGLLLGQLLHKAGIDNVILERQTPD   37 (292)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHTCCEEEECSSCHH
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCC
Confidence            7999999999999999999999999999998753

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.20  E-value=0.0013  Score=50.98  Aligned_cols=34  Identities=21%  Similarity=0.304  Sum_probs=32.1

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCCeeEEecCCHH
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEK  254 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~  254 (359)
                      ++|.|||+|.+|.-+|..+++.|.+|+++++++.
T Consensus        23 k~vvIvGgG~iG~E~A~~l~~~G~~Vtlv~~~~~   56 (125)
T d3grsa2          23 GRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDK   56 (125)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CEEEEEcCCccHHHHHHHHhcCCcEEEEEeeccc
Confidence            7999999999999999999999999999999754

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=96.19  E-value=0.0014  Score=58.97  Aligned_cols=35  Identities=29%  Similarity=0.460  Sum_probs=32.7

Q ss_pred             ccEEEEECCCcchHHHHHHHHHCCCeeEEecCCHH
Q psy9056         220 VKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEK  254 (359)
Q Consensus       220 ~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~  254 (359)
                      .+||.|||+|.-|.+.|..|+++|++|++++.++.
T Consensus         2 ~KKI~IIGaG~sGL~aA~~L~k~G~~V~viEk~~~   36 (314)
T d2bi7a1           2 SKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDH   36 (314)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSS
T ss_pred             CCEEEEECCcHHHHHHHHHHHhCCCCEEEEECCCC
Confidence            48999999999999999999999999999998864

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=96.19  E-value=0.032  Score=48.21  Aligned_cols=42  Identities=24%  Similarity=0.159  Sum_probs=36.7

Q ss_pred             cEEEEECC-CcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHH
Q psy9056         221 KTVAVLGA-GLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQ  262 (359)
Q Consensus       221 ~kI~IIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~  262 (359)
                      |++-|.|+ +-+|.++|..|++.|++|++.+++++.+++..+.
T Consensus         7 K~alITGas~GIG~aia~~la~~G~~V~i~~r~~~~l~~~~~~   49 (258)
T d1ae1a_           7 TTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDECLEI   49 (258)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH
Confidence            67888885 8899999999999999999999999888776543

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=96.15  E-value=0.0054  Score=49.53  Aligned_cols=39  Identities=21%  Similarity=0.203  Sum_probs=34.8

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHH
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARG  259 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~  259 (359)
                      .+|.|+|+|.+|...+..+...|.+|++.|.++++++.+
T Consensus        32 ~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~~~~~~a   70 (168)
T d1uufa2          32 KKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAA   70 (168)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHH
T ss_pred             CEEEEeccchHHHHHHHHhhcccccchhhccchhHHHHH
Confidence            689999999999999988888999999999999876654

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=96.12  E-value=0.0013  Score=56.71  Aligned_cols=33  Identities=30%  Similarity=0.535  Sum_probs=30.7

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCCeeEEecCCH
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFE  253 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~  253 (359)
                      ++|+|||+|.-|.+.|..|+++|++|++++.++
T Consensus         1 m~V~IIGaG~aGL~aA~~L~~~G~~V~vlE~~~   33 (347)
T d2ivda1           1 MNVAVVGGGISGLAVAHHLRSRGTDAVLLESSA   33 (347)
T ss_dssp             CCEEEECCBHHHHHHHHHHHTTTCCEEEECSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCCEEEEecCC
Confidence            379999999999999999999999999999864

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=96.10  E-value=0.0013  Score=50.51  Aligned_cols=34  Identities=26%  Similarity=0.491  Sum_probs=31.7

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCCeeEEecCCHH
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEK  254 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~  254 (359)
                      ++|.|||+|.+|.-+|..+++.|.+|+++.+++.
T Consensus        23 ~~i~IiG~G~ig~E~A~~l~~~G~~Vtiv~~~~~   56 (119)
T d3lada2          23 GKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDK   56 (119)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             CeEEEECCChHHHHHHHHHHHcCCceEEEEeecc
Confidence            7899999999999999999999999999987754

>d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Usg-1 protein homolog PA3116
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.09  E-value=0.0038  Score=49.51  Aligned_cols=93  Identities=17%  Similarity=0.202  Sum_probs=56.9

Q ss_pred             cEEEEECC-CcchHHHHHHHHHCCC---eeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhccccc-ccCcC
Q psy9056         221 KTVAVLGA-GLMGAGIAHVTVDKGY---NTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVG-TLSYD  295 (359)
Q Consensus       221 ~kI~IIG~-G~mG~~iA~~l~~~G~---~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~-~~~~~  295 (359)
                      .+|+|||+ |+.|.-+.+.|.+++|   ++..+.-+...        .+.+..              ....+.. ..+.+
T Consensus         3 mnVaIvGATGyvG~eli~lL~~~~hP~~~l~~~~s~~~~--------Gk~i~~--------------~~~~~~~~~~~~~   60 (144)
T d2hjsa1           3 LNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESA--------GQRMGF--------------AESSLRVGDVDSF   60 (144)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTTT--------TCEEEE--------------TTEEEECEEGGGC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCCCceEEEEEeecccC--------Ccceee--------------ccccchhccchhh
Confidence            48999998 9999999999987665   56555433211        000000              0011221 11224


Q ss_pred             CCCCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCcH
Q psy9056         296 PFKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPI  340 (359)
Q Consensus       296 ~l~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~  340 (359)
                      ...++|++|.|+|...  -..+...+.   ..+++|+++++....
T Consensus        61 ~~~~~d~vf~a~p~~~--s~~~~~~~~---~~g~~VID~Ss~fR~  100 (144)
T d2hjsa1          61 DFSSVGLAFFAAAAEV--SRAHAERAR---AAGCSVIDLSGALEP  100 (144)
T ss_dssp             CGGGCSEEEECSCHHH--HHHHHHHHH---HTTCEEEETTCTTTT
T ss_pred             hhccceEEEecCCcch--hhhhccccc---cCCceEEeechhhcc
Confidence            5788999999998555  335555544   357888898886543

>d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Methanothermus fervidus [TaxId: 2180]

Probab=96.08  E-value=0.0038  Score=51.09  Aligned_cols=35  Identities=23%  Similarity=0.327  Sum_probs=27.4

Q ss_pred             ccEEEEECCCcchHHHHHHHHHCC-CeeEEe-cCCHH
Q psy9056         220 VKTVAVLGAGLMGAGIAHVTVDKG-YNTIVK-DSFEK  254 (359)
Q Consensus       220 ~~kI~IIG~G~mG~~iA~~l~~~G-~~V~l~-d~~~~  254 (359)
                      |++|+|-|.|.+|..+.+.+...+ .+|+.+ |+++.
T Consensus         1 M~~VgINGfGRIGR~v~R~l~~~~di~vvaInd~~~~   37 (171)
T d1cf2o1           1 MKAVAINGYGTVGKRVADAIAQQDDMKVIGVSKTRPD   37 (171)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTSSSEEEEEEEESSCS
T ss_pred             CeEEEEEcCcHHHHHHHHHHHhCCCceEEEEecCCcH
Confidence            689999999999999999887775 455544 65543

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=96.06  E-value=0.0027  Score=48.86  Aligned_cols=36  Identities=28%  Similarity=0.473  Sum_probs=32.8

Q ss_pred             ccEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHH
Q psy9056         220 VKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKG  255 (359)
Q Consensus       220 ~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~  255 (359)
                      .++|.|||+|.+|.-+|..+++.|.+|+++++.+.-
T Consensus        30 ~k~vvViGgG~iG~E~A~~l~~~g~~Vtlie~~~~~   65 (123)
T d1nhpa2          30 VNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRP   65 (123)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSST
T ss_pred             CCEEEEECChHHHHHHHHHhhccceEEEEEEecCcc
Confidence            379999999999999999999999999999887643

>d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Aldehyde reductase II
species: Sporobolomyces salmonicolor [TaxId: 5005]

Probab=96.06  E-value=0.015  Score=52.02  Aligned_cols=40  Identities=23%  Similarity=0.274  Sum_probs=35.3

Q ss_pred             ccEEEEECC-CcchHHHHHHHHHCCCeeEEecCCHHHHHHH
Q psy9056         220 VKTVAVLGA-GLMGAGIAHVTVDKGYNTIVKDSFEKGLARG  259 (359)
Q Consensus       220 ~~kI~IIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~  259 (359)
                      -++|.|.|+ |.+|+-++..|.++|++|+...|+.++.+..
T Consensus        11 gk~VlVTG~sGfIGs~l~~~Ll~~G~~V~~~vR~~~~~~~~   51 (342)
T d1y1pa1          11 GSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANL   51 (342)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHH
T ss_pred             cCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCchhHHHH
Confidence            479999996 9999999999999999999999988765544

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=96.04  E-value=0.0013  Score=50.10  Aligned_cols=35  Identities=20%  Similarity=0.308  Sum_probs=32.5

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHH
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKG  255 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~  255 (359)
                      +++.|||+|..|.-+|..+++.|.+|+++++.+.-
T Consensus        22 ~~vvIiGgG~~G~E~A~~l~~~g~~Vtlve~~~~i   56 (115)
T d1lvla2          22 QHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERI   56 (115)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHhhcccceEEEeeeccc
Confidence            79999999999999999999999999999887654

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=96.04  E-value=0.0012  Score=51.01  Aligned_cols=36  Identities=25%  Similarity=0.317  Sum_probs=33.2

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHH
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGL  256 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l  256 (359)
                      +++.|||+|++|.-+|..+.+.|.+|+++++++.-+
T Consensus        26 ~~~viiG~G~iglE~A~~~~~~G~~Vtvi~~~~~~l   61 (123)
T d1dxla2          26 KKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEIV   61 (123)
T ss_dssp             SEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSSSS
T ss_pred             CeEEEEccchHHHHHHHHHHhcCCeEEEEEEccccC
Confidence            799999999999999999999999999998877543

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=96.00  E-value=0.0026  Score=48.94  Aligned_cols=36  Identities=14%  Similarity=0.351  Sum_probs=33.6

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHH
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGL  256 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l  256 (359)
                      ++|.|||+|.+|.-+|..+++.|.+|+++++++.-+
T Consensus        31 ~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~~l   66 (121)
T d1d7ya2          31 SRLLIVGGGVIGLELAATARTAGVHVSLVETQPRLM   66 (121)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTT
T ss_pred             CeEEEECcchhHHHHHHHhhcccceEEEEeeccccc
Confidence            689999999999999999999999999999988654

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=95.99  E-value=0.034  Score=47.90  Aligned_cols=43  Identities=30%  Similarity=0.368  Sum_probs=36.2

Q ss_pred             cEEEEE-CC-CcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHH
Q psy9056         221 KTVAVL-GA-GLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQI  263 (359)
Q Consensus       221 ~kI~II-G~-G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~  263 (359)
                      .||++| |+ +-+|.++|..|++.|++|++.|++++.+++..+.+
T Consensus         2 gKValITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~l   46 (257)
T d2rhca1           2 SEVALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKEL   46 (257)
T ss_dssp             CCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH
Confidence            367766 54 77999999999999999999999999888766544

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=95.98  E-value=0.029  Score=48.22  Aligned_cols=43  Identities=23%  Similarity=0.259  Sum_probs=35.8

Q ss_pred             cEEEEE-CC-CcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHH
Q psy9056         221 KTVAVL-GA-GLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQI  263 (359)
Q Consensus       221 ~kI~II-G~-G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~  263 (359)
                      .||++| |+ +-+|.++|..|++.|++|++.|++++.+++..+.+
T Consensus        10 nKvalITGas~GIG~a~a~~la~~Ga~V~~~~r~~~~l~~~~~~l   54 (251)
T d2c07a1          10 NKVALVTGAGRGIGREIAKMLAKSVSHVICISRTQKSCDSVVDEI   54 (251)
T ss_dssp             SCEEEEESTTSHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHH
Confidence            456655 75 78999999999999999999999999888765544

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=95.95  E-value=0.002  Score=53.96  Aligned_cols=33  Identities=24%  Similarity=0.459  Sum_probs=30.4

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCC-eeEEecCCH
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGY-NTIVKDSFE  253 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~-~V~l~d~~~  253 (359)
                      ++|.|||+|.-|.+.|..|+++|+ +|+++|.++
T Consensus         1 P~V~IIGaG~aGL~aA~~L~~~G~~~V~vlE~~~   34 (347)
T d1b5qa1           1 PRVIVVGAGMSGISAAKRLSEAGITDLLILEATD   34 (347)
T ss_dssp             CCEEEECCBHHHHHHHHHHHHTTCCCEEEECSSS
T ss_pred             CCEEEECCcHHHHHHHHHHHhCCCCcEEEEECCC
Confidence            379999999999999999999996 799999875

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.95  E-value=0.0027  Score=55.34  Aligned_cols=35  Identities=17%  Similarity=0.322  Sum_probs=32.0

Q ss_pred             CccEEEEECCCcchHHHHHHHHHCCCeeEEecCCH
Q psy9056         219 PVKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFE  253 (359)
Q Consensus       219 ~~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~  253 (359)
                      +=.||.|||+|.-|.+.|..|+++|++|++++.++
T Consensus         4 ~~~kViVIGaG~aGL~aA~~L~~~G~~V~VlEa~~   38 (449)
T d2dw4a2           4 KTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARD   38 (449)
T ss_dssp             CCCEEEEECCBHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCC
Confidence            34689999999999999999999999999999764

>d2cbya1 c.14.1.1 (A:15-193) Clp protease, ClpP subunit {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Clp protease, ClpP subunit
domain: Clp protease, ClpP subunit
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.91  E-value=0.0029  Score=52.16  Aligned_cols=80  Identities=14%  Similarity=0.126  Sum_probs=51.3

Q ss_pred             CCCCchHHHHHHhcC--EEEEecCCceEEeccccCCCCCCCcchH---------------hHHhhhcC--hHHHHHHHhc
Q psy9056           1 MFAEPSLATVALACH--YRIVVKDKKTGLGLPEVMLGLLPGAGGT---------------QRLPKLTA--LPNVLDMTLT   61 (359)
Q Consensus         1 ~~a~GgG~~lalacD--~ria~~~~~~~~~~pe~~~Gi~p~~g~~---------------~~l~~~~g--~~~a~~~~lt   61 (359)
                      |.|.+.|+.+.+++|  .|++.++  ++|-+-++..|+.-...-.               ..+.+..|  .....+.+-.
T Consensus        80 G~aaS~a~~il~ag~k~~R~~~~~--s~~miH~~~~~~~G~~~~i~~~~~~l~~~~~~i~~i~a~~tg~~~~~i~~~~~~  157 (179)
T d2cbya1          80 GMAASMGEFLLAAGTKGKRYALPH--ARILMHQPLGGVTGSAADIAIQAEQFAVIKKEMFRLNAEFTGQPIERIEADSDR  157 (179)
T ss_dssp             EEEETHHHHHHHTSCTTCEEECTT--CEEECCCC----------CHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHT
T ss_pred             hhhhhHHHHHHHcCCCCceEECCc--hHhhcCCCchhcCCccHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHhhcC
Confidence            457788999999999  8999988  9999988866553221100               01111212  2233444556


Q ss_pred             CCCCCHHHHHHcCCcceecCC
Q psy9056          62 GKTLKADKAKKMGIVDQLVEP   82 (359)
Q Consensus        62 g~~~~a~eA~~~Glv~~~~~~   82 (359)
                      ...++|+||+++||||+++.+
T Consensus       158 d~~l~a~EA~~~GliDeIi~~  178 (179)
T d2cbya1         158 DRWFTAAEALEYGFVDHIITR  178 (179)
T ss_dssp             TCEEEHHHHHHHTSCSEECSC
T ss_pred             CceecHHHHHHcCCCcEEecC
Confidence            677999999999999999875

>d1y81a1 c.2.1.8 (A:6-121) Hypothetical protein PF0725 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein PF0725
species: Pyrococcus furiosus [TaxId: 2261]

Probab=95.91  E-value=0.0068  Score=46.17  Aligned_cols=93  Identities=18%  Similarity=0.174  Sum_probs=61.8

Q ss_pred             ccEEEEECC----CcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcC
Q psy9056         220 VKTVAVLGA----GLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYD  295 (359)
Q Consensus       220 ~~kI~IIG~----G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~  295 (359)
                      .|+|+|||+    |..|..+...+.+.||+|+.++.+.+.                             ...+.+..+++
T Consensus         1 ~KsIAVvGaS~~~~k~g~~v~~~L~~~g~~V~pVnP~~~~-----------------------------i~G~~~y~sl~   51 (116)
T d1y81a1           1 FRKIALVGASKNPAKYGNIILKDLLSKGFEVLPVNPNYDE-----------------------------IEGLKCYRSVR   51 (116)
T ss_dssp             CCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSE-----------------------------ETTEECBSSGG
T ss_pred             CcEEEEEcccCCCCCcHHHHHHHHHHCCCEEEEEcccccc-----------------------------ccCccccccch
Confidence            378999995    788999999999999998888765331                             11234445554


Q ss_pred             CC-CCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCcHHHHHhh
Q psy9056         296 PF-KNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPITKIAAA  346 (359)
Q Consensus       296 ~l-~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~l~~~  346 (359)
                      ++ ...|++++++|.+.  ..+++++..+. +...+++  .++..-+++.+.
T Consensus        52 ~lp~~~D~vvi~vp~~~--~~~~l~~~~~~-g~k~v~~--~~g~~~~~~~~~   98 (116)
T d1y81a1          52 ELPKDVDVIVFVVPPKV--GLQVAKEAVEA-GFKKLWF--QPGAESEEIRRF   98 (116)
T ss_dssp             GSCTTCCEEEECSCHHH--HHHHHHHHHHT-TCCEEEE--CTTSCCHHHHHH
T ss_pred             hccccceEEEEEeCHHH--HHHHHHHHHhc-CCceEEe--ccchhhHHHHHH
Confidence            44 45799999997555  66888887664 3344543  334444444433

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.90  E-value=0.0024  Score=49.17  Aligned_cols=32  Identities=19%  Similarity=0.144  Sum_probs=30.5

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCCeeEEecCC
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSF  252 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~  252 (359)
                      +++.|||+|.+|.-+|..+.+.|.+|+++.++
T Consensus        21 ~~vvIIGgG~iG~E~A~~l~~lG~~Vtii~~~   52 (122)
T d1h6va2          21 GKTLVVGASYVALECAGFLAGIGLDVTVMVRS   52 (122)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CeEEEECCCccHHHHHHHHhhcCCeEEEEEec
Confidence            68999999999999999999999999999876

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=95.89  E-value=0.0028  Score=48.62  Aligned_cols=34  Identities=18%  Similarity=0.357  Sum_probs=32.0

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCCeeEEecCCHH
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEK  254 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~  254 (359)
                      ++|.|||+|.+|.-+|..+++.|++|+++++++.
T Consensus        33 ~~vvIiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~   66 (122)
T d1xhca2          33 GEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAM   66 (122)
T ss_dssp             SEEEEEECSHHHHHHHHHHHHTTCEEEEECSSSC
T ss_pred             CcEEEECCcHHHHHHHHHhhcccceEEEEecccc
Confidence            5899999999999999999999999999998865

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.85  E-value=0.029  Score=49.58  Aligned_cols=88  Identities=15%  Similarity=0.197  Sum_probs=56.8

Q ss_pred             cEEEEECC-CcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcCCCCC
Q psy9056         221 KTVAVLGA-GLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPFKN  299 (359)
Q Consensus       221 ~kI~IIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~  299 (359)
                      |.+-|-|+ +-+|.++|..|++.|++|++.+++.+++++..+.++..+                           ....+
T Consensus        13 KvalITGas~GIG~aia~~la~~Ga~Vvi~~r~~~~l~~~~~el~~~~---------------------------~~~~~   65 (297)
T d1yxma1          13 QVAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKSAADELQANL---------------------------PPTKQ   65 (297)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTS---------------------------CTTCC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhh---------------------------ccccC
Confidence            45556675 779999999999999999999999998887665443211                           11122


Q ss_pred             ccEEEE-cccCCHHHHHHHHHHHHHhCCCCcEEEEcC
Q psy9056         300 ADMVIE-AVFEDINIKHQVIKEIEAVVPPHCVVATNT  335 (359)
Q Consensus       300 aD~Vi~-avp~~~~~k~~v~~~l~~~~~~~~ii~s~t  335 (359)
                      ..++.. |=..+.+..+.+++++.+...+=.+++.|.
T Consensus        66 ~~~~~~~~Dvs~~~~v~~~~~~~~~~~G~iDiLVnnA  102 (297)
T d1yxma1          66 ARVIPIQCNIRNEEEVNNLVKSTLDTFGKINFLVNNG  102 (297)
T ss_dssp             CCEEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred             ceEEEEeccCCCHHHHHHHHHHHHHHhCCeEEEEeec
Confidence            333322 223456666777777666544444555554

>d1mb4a1 c.2.1.3 (A:1-132,A:355-369) Aspartate beta-semialdehyde dehydrogenase {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Vibrio cholerae [TaxId: 666]

Probab=95.85  E-value=0.0034  Score=50.03  Aligned_cols=96  Identities=14%  Similarity=0.192  Sum_probs=56.1

Q ss_pred             cEEEEECC-CcchHHHHHHHHHC-CC---eeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcC
Q psy9056         221 KTVAVLGA-GLMGAGIAHVTVDK-GY---NTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYD  295 (359)
Q Consensus       221 ~kI~IIG~-G~mG~~iA~~l~~~-G~---~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~  295 (359)
                      +||+|||+ |+.|.-+...+.++ .|   ++..+..+...                  |+..... . ....+....+.+
T Consensus         1 mKVaIiGATGyvG~eLi~lLl~~~~~p~~~i~~~ss~~~~------------------gk~~~~~-~-~~~~~~~~~~~~   60 (147)
T d1mb4a1           1 MRVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFSTSQIG------------------VPAPNFG-K-DAGMLHDAFDIE   60 (147)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTGGGGSEEEEEESSCCS------------------SBCCCSS-S-CCCBCEETTCHH
T ss_pred             CEEEEECCccHHHHHHHHHHHhcCCCCceEEEEecccccc------------------ccccccC-C-cceeeecccchh
Confidence            47999997 99999999877764 34   44444333210                  0000000 0 000011112223


Q ss_pred             CCCCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCc
Q psy9056         296 PFKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIP  339 (359)
Q Consensus       296 ~l~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~  339 (359)
                      ...++|+||.|+|...  -+.+...+.+. ...++|+++++...
T Consensus        61 ~~~~~DvvF~alp~~~--s~~~~~~l~~~-g~~~~VIDlSsdfR  101 (147)
T d1mb4a1          61 SLKQLDAVITCQGGSY--TEKVYPALRQA-GWKGYWIDAASTLR  101 (147)
T ss_dssp             HHTTCSEEEECSCHHH--HHHHHHHHHHT-TCCSEEEESSSTTT
T ss_pred             hhccccEEEEecCchH--HHHHhHHHHHc-CCceEEEeCCcccc
Confidence            4689999999998666  44777776654 44578889888653

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=95.79  E-value=0.0024  Score=57.45  Aligned_cols=36  Identities=17%  Similarity=0.267  Sum_probs=32.1

Q ss_pred             CccEEEEECCCcchHHHHHHHHHCC--CeeEEecCCHH
Q psy9056         219 PVKTVAVLGAGLMGAGIAHVTVDKG--YNTIVKDSFEK  254 (359)
Q Consensus       219 ~~~kI~IIG~G~mG~~iA~~l~~~G--~~V~l~d~~~~  254 (359)
                      .||||+|||+|.-|..+|..|++.|  ++|++++++.+
T Consensus         3 ~~KrVaIIGaG~sGl~~A~~L~~~~~~~~v~vfEk~~~   40 (335)
T d2gv8a1           3 TIRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGS   40 (335)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSS
T ss_pred             CCCeEEEECcCHHHHHHHHHHHHhCCCCCEEEEECCCC
Confidence            4789999999999999999998876  59999999864

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.77  E-value=0.034  Score=44.25  Aligned_cols=40  Identities=20%  Similarity=0.161  Sum_probs=36.3

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHH
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGL  260 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~  260 (359)
                      .+|.|+|+|.+|...+..+...|.+|+..|+++++++.++
T Consensus        29 ~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~~~~~~a~   68 (166)
T d1llua2          29 QWVAISGIGGLGHVAVQYARAMGLHVAAIDIDDAKLELAR   68 (166)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred             CEEEEeeccccHHHHHHHHHHcCCccceecchhhHHHhhh
Confidence            5899999999999999999999999999999999877654

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=95.77  E-value=0.0038  Score=48.75  Aligned_cols=36  Identities=19%  Similarity=0.425  Sum_probs=33.3

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHH
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGL  256 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l  256 (359)
                      ++|.|||+|.+|.-+|..+++.|.+|+++++++.-+
T Consensus        36 k~v~VIGgG~iG~E~A~~l~~~g~~Vtvie~~~~~l   71 (133)
T d1q1ra2          36 NRLVVIGGGYIGLEVAATAIKANMHVTLLDTAARVL   71 (133)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTT
T ss_pred             CEEEEECCchHHHHHHHHHHhhCcceeeeeeccccc
Confidence            699999999999999999999999999999887644

>d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=95.76  E-value=0.0068  Score=49.53  Aligned_cols=86  Identities=16%  Similarity=0.136  Sum_probs=46.0

Q ss_pred             cEEEEECCCcchHHHHHHHHHCC-CeeE-EecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhh-hcccccccCc-CC
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKG-YNTI-VKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRY-LASLVGTLSY-DP  296 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G-~~V~-l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~i~~~~~~-~~  296 (359)
                      .||+|.|.|.+|..+.+.+.... .+|+ +.|.++.........      ................ ...+....+. +.
T Consensus         3 irIaINGfGRIGR~v~Ral~~~~dieiVaINd~~~~~~~~~l~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (172)
T d2czca2           3 VKVGVNGYGTIGKRVAYAVTKQDDMELIGITKTKPDFEAYRAKE------LGIPVYAASEEFIPRFEKEGFEVAGTLNDL   76 (172)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTCTTEEEEEEEESSCSHHHHHHHH------TTCCEEESSGGGHHHHHHHTCCCSCBHHHH
T ss_pred             EEEEEECCCHHHHHHHHHHHhCCCceEEEEecCCChHHHHHhhh------cCceeecccccceeeecccCccccchhhhh
Confidence            39999999999999999887654 4544 446666432221110      0001100011111111 0112222222 23


Q ss_pred             CCCccEEEEcccCCHH
Q psy9056         297 FKNADMVIEAVFEDIN  312 (359)
Q Consensus       297 l~~aD~Vi~avp~~~~  312 (359)
                      ..++|+||||++--..
T Consensus        77 ~~~vDvViEcTG~f~~   92 (172)
T d2czca2          77 LEKVDIIVDATPGGIG   92 (172)
T ss_dssp             HTTCSEEEECCSTTHH
T ss_pred             hccCCEEEECCCCCCC
Confidence            5789999999987664

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.75  E-value=0.049  Score=46.59  Aligned_cols=42  Identities=19%  Similarity=0.112  Sum_probs=35.1

Q ss_pred             EEEEECC-CcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHH
Q psy9056         222 TVAVLGA-GLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQI  263 (359)
Q Consensus       222 kI~IIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~  263 (359)
                      .|-|-|+ +-+|..+|..|+++|.+|+++|++++++++..+.+
T Consensus         9 v~lITGas~GIG~~ia~~la~~G~~V~l~~r~~~~l~~~~~~~   51 (244)
T d1yb1a_           9 IVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKC   51 (244)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred             EEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH
Confidence            4445576 66999999999999999999999999988776544

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.72  E-value=0.027  Score=48.92  Aligned_cols=42  Identities=24%  Similarity=0.276  Sum_probs=36.2

Q ss_pred             cEEEEECC-CcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHH
Q psy9056         221 KTVAVLGA-GLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQ  262 (359)
Q Consensus       221 ~kI~IIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~  262 (359)
                      |++-|.|+ +-+|.++|..|++.|++|++.+|+.+++++..+.
T Consensus        15 K~alITGassGIG~aiA~~la~~G~~Vil~~r~~~~l~~~~~~   57 (269)
T d1xu9a_          15 KKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVSH   57 (269)
T ss_dssp             CEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH
Confidence            56777786 6699999999999999999999999998876553

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=95.71  E-value=0.0032  Score=47.99  Aligned_cols=35  Identities=20%  Similarity=0.130  Sum_probs=32.7

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHH
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKG  255 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~  255 (359)
                      ++|.|||+|.+|.-+|..+++.|.+|+++++.+.-
T Consensus        23 ~~vvVvGgG~ig~E~A~~l~~~g~~vt~i~~~~~~   57 (121)
T d1mo9a2          23 STVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPL   57 (121)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTT
T ss_pred             CEEEEECCCHHHHHHHHHHHhcchhheEeeccchh
Confidence            79999999999999999999999999999988654

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=95.65  E-value=0.042  Score=47.49  Aligned_cols=44  Identities=20%  Similarity=0.294  Sum_probs=36.7

Q ss_pred             cEEEEE-C-CCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHH
Q psy9056         221 KTVAVL-G-AGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIK  264 (359)
Q Consensus       221 ~kI~II-G-~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~  264 (359)
                      .|+++| | ++-+|.++|..|++.|++|++.+++++.+++..+.++
T Consensus         5 gKvalVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~l~   50 (264)
T d1spxa_           5 EKVAIITGSSNGIGRATAVLFAREGAKVTITGRHAERLEETRQQIL   50 (264)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHH
T ss_pred             CCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHH
Confidence            456666 5 5899999999999999999999999999887765443

>d1y7oa1 c.14.1.1 (A:2-193) Clp protease, ClpP subunit {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Clp protease, ClpP subunit
domain: Clp protease, ClpP subunit
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=95.62  E-value=0.0088  Score=49.68  Aligned_cols=80  Identities=15%  Similarity=0.155  Sum_probs=50.3

Q ss_pred             CCCCchHHHHHHh--cCEEEEecCCceEEeccccCCCCCCCcchH-----------------hHHhhhcC--hHHHHHHH
Q psy9056           1 MFAEPSLATVALA--CHYRIVVKDKKTGLGLPEVMLGLLPGAGGT-----------------QRLPKLTA--LPNVLDMT   59 (359)
Q Consensus         1 ~~a~GgG~~lala--cD~ria~~~~~~~~~~pe~~~Gi~p~~g~~-----------------~~l~~~~g--~~~a~~~~   59 (359)
                      |.|.+.|+.|.++  ||.|++.++  ++|-+-+...|..-.....                 ..+....|  .....+.+
T Consensus        91 G~aaS~as~il~aG~~g~R~~~pn--s~~miHq~~~~~~G~~~~~~~~~~~~el~~~~~~i~~i~~~~tg~~~~~i~~~~  168 (192)
T d1y7oa1          91 GMAASMGTVIASSGAKGKRFMLPN--AEYMIHQPMGGTGGGTQQTDMAIAPEHLLKTRNTLEKILAENSGQSMEKVHADA  168 (192)
T ss_dssp             EEEETHHHHHHTTSCTTCEEECTT--CEEECCCCC--------------CHHHHHHHHHHHHHHHHHHHTCCHHHHHHHH
T ss_pred             cccCCccceeeeecCCCccccchH--HHHHhhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHhh
Confidence            4567777777665  679999988  9999998877664321111                 01112222  23444555


Q ss_pred             hcCCCCCHHHHHHcCCcceecCC
Q psy9056          60 LTGKTLKADKAKKMGIVDQLVEP   82 (359)
Q Consensus        60 ltg~~~~a~eA~~~Glv~~~~~~   82 (359)
                      -....++|+||+++||||+++.+
T Consensus       169 ~rd~~lsa~EAleyGliD~Ii~~  191 (192)
T d1y7oa1         169 ERDNWMSAQETLEYGFIDEIMAN  191 (192)
T ss_dssp             HSCCCBCHHHHHHHTSCSEECCC
T ss_pred             cCCceecHHHHHHcCCCcEEecC
Confidence            56677999999999999999864

>d1x7da_ c.2.1.13 (A:) Ornithine cyclodeaminase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Ornithine cyclodeaminase-like
domain: Ornithine cyclodeaminase
species: Pseudomonas putida [TaxId: 303]

Probab=95.59  E-value=0.0081  Score=54.46  Aligned_cols=96  Identities=14%  Similarity=0.164  Sum_probs=63.8

Q ss_pred             cEEEEECCCcchHHHHHHHHH-CCC-eeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CCC
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVD-KGY-NTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DPF  297 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~-~G~-~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~l  297 (359)
                      ++++|||+|..+..-+..+.. .+. +|.+||+++++.++..+.+...      .|           -.+..+++. +++
T Consensus       129 ~~l~iiG~G~QA~~~~~a~~~v~~i~~V~v~~r~~~~~~~~~~~l~~~------~g-----------~~v~~~~s~~eav  191 (340)
T d1x7da_         129 RKMALIGNGAQSEFQALAFHKHLGIEEIVAYDTDPLATAKLIANLKEY------SG-----------LTIRRASSVAEAV  191 (340)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHTTC------TT-----------CEEEECSSHHHHH
T ss_pred             ceEEEEcccHHHHHHHHHHhhhcceeeeEEEecChHHHHHHHHhhhhc------cC-----------CCceecCCHHHHH
Confidence            689999999999988776544 343 8999999999877765433210      01           124456666 568


Q ss_pred             CCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCC
Q psy9056         298 KNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSA  337 (359)
Q Consensus       298 ~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~  337 (359)
                      ++||+|+.|++.+..  ..++.  .+.+++++.|....+.
T Consensus       192 ~~ADIi~t~Tas~s~--~Pv~~--~~~l~pG~hI~aiGs~  227 (340)
T d1x7da_         192 KGVDIITTVTADKAY--ATIIT--PDMLEPGMHLNAVGGD  227 (340)
T ss_dssp             TTCSEEEECCCCSSE--EEEEC--GGGCCTTCEEEECSCC
T ss_pred             hcCCceeeccccCCC--Ccccc--hhhcCCCCEEeecccc
Confidence            999999998865421  01222  2457888877665553

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.52  E-value=0.044  Score=47.21  Aligned_cols=44  Identities=23%  Similarity=0.284  Sum_probs=36.8

Q ss_pred             cEEEEECC-CcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHH
Q psy9056         221 KTVAVLGA-GLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIK  264 (359)
Q Consensus       221 ~kI~IIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~  264 (359)
                      |.+-|.|+ +-+|.++|..|++.|++|++.+++++++++..+.++
T Consensus        11 Kv~lITGas~GIG~aiA~~la~~G~~Vv~~~r~~~~l~~~~~~l~   55 (257)
T d1xg5a_          11 RLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAECK   55 (257)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHH
Confidence            44556675 889999999999999999999999998888765544

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=95.51  E-value=0.039  Score=48.25  Aligned_cols=43  Identities=19%  Similarity=0.234  Sum_probs=35.4

Q ss_pred             cEEEEEC-CCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHH
Q psy9056         221 KTVAVLG-AGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQI  263 (359)
Q Consensus       221 ~kI~IIG-~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~  263 (359)
                      |.+-|-| +|-+|.++|..|++.|++|++.|++.+++++..+.+
T Consensus        26 K~alITGas~GIG~aiA~~la~~Ga~Vii~~r~~~~l~~~~~~l   69 (294)
T d1w6ua_          26 KVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDVLKATAEQI   69 (294)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHH
Confidence            3444555 599999999999999999999999999888765544

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.43  E-value=0.0014  Score=55.53  Aligned_cols=29  Identities=24%  Similarity=0.368  Sum_probs=25.3

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCCeeEEe
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVK  249 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~~V~l~  249 (359)
                      +||.|||+|.+|.+.|..|+++|++|+++
T Consensus         1 mkV~VIGaGi~GlstA~~L~~~G~~v~v~   29 (246)
T d1kifa1           1 MRVVVIGAGVIGLSTALCIHERYHSVLQP   29 (246)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHHTTTSSS
T ss_pred             CEEEEECchHHHHHHHHHHHHCCCCceEE
Confidence            47999999999999999999999865433

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.40  E-value=0.0048  Score=51.19  Aligned_cols=31  Identities=23%  Similarity=0.321  Sum_probs=29.8

Q ss_pred             EEEECCCcchHHHHHHHHHCCCeeEEecCCH
Q psy9056         223 VAVLGAGLMGAGIAHVTVDKGYNTIVKDSFE  253 (359)
Q Consensus       223 I~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~  253 (359)
                      |.|||+|.-|...|..|+++|++|.++|.++
T Consensus         8 viViGaG~~Gl~~A~~La~~G~~V~vlE~~~   38 (297)
T d2bcgg1           8 VIVLGTGITECILSGLLSVDGKKVLHIDKQD   38 (297)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             EEEECcCHHHHHHHHHHHHCCCCEEEEcCCC
Confidence            8999999999999999999999999999975

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.38  E-value=0.055  Score=46.39  Aligned_cols=41  Identities=20%  Similarity=0.102  Sum_probs=34.0

Q ss_pred             EEEEECC-CcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHH
Q psy9056         222 TVAVLGA-GLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQ  262 (359)
Q Consensus       222 kI~IIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~  262 (359)
                      .+-|-|+ +-+|.++|..|++.|.+|++.|++++++++....
T Consensus         5 valITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~   46 (254)
T d2gdza1           5 VALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAA   46 (254)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH
Confidence            3444475 7799999999999999999999999988776543

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=95.36  E-value=0.0035  Score=48.44  Aligned_cols=35  Identities=17%  Similarity=0.305  Sum_probs=32.4

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHH
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKG  255 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~  255 (359)
                      +++.|||+|.+|.-+|..+.+.|.+|+++++.+.-
T Consensus        27 ~~vvIiGgG~IG~E~A~~~~~~G~~Vtive~~~~i   61 (125)
T d1ojta2          27 GKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGL   61 (125)
T ss_dssp             SEEEEESCSHHHHHHHHHHHHHTCEEEEECSSSSS
T ss_pred             CeEEEECCCHHHHHHHHHhhcCCCEEEEEEeeccc
Confidence            79999999999999999999999999999887644

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=95.35  E-value=0.0052  Score=54.03  Aligned_cols=33  Identities=30%  Similarity=0.588  Sum_probs=29.9

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCC-eeEEecCCH
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGY-NTIVKDSFE  253 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~-~V~l~d~~~  253 (359)
                      .+|.|||+|.+|.++|..|++.|. +|+++|+++
T Consensus         2 ~dViIIGaGi~G~s~A~~La~~G~~~V~liE~~~   35 (305)
T d1pj5a2           2 PRIVIIGAGIVGTNLADELVTRGWNNITVLDQGP   35 (305)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCCEEEECSSC
T ss_pred             CCEEEECcCHHHHHHHHHHHHcCCCcEEEEeCCC
Confidence            379999999999999999999996 799999874

>d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Escherichia coli [TaxId: 562]

Probab=95.35  E-value=0.018  Score=46.33  Aligned_cols=102  Identities=15%  Similarity=0.082  Sum_probs=58.8

Q ss_pred             cEEEEECC-CcchHHHHHHHHHC-CCee-EEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcC-C
Q psy9056         221 KTVAVLGA-GLMGAGIAHVTVDK-GYNT-IVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYD-P  296 (359)
Q Consensus       221 ~kI~IIG~-G~mG~~iA~~l~~~-G~~V-~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~  296 (359)
                      -||+|+|+ |.||..++..+.+. +.++ -.+|+.....          +.  ...+.+..    .....+.++.+.+ .
T Consensus         5 ikI~i~Ga~GrMG~~i~~~i~~~~~~~lv~~~~~~~~~~----------~g--~d~~~~~~----~~~~~~~~~~~~~~~   68 (162)
T d1diha1           5 IRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSL----------LG--SDAGELAG----AGKTGVTVQSSLDAV   68 (162)
T ss_dssp             EEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTTCTT----------CS--CCTTCSSS----SSCCSCCEESCSTTT
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecccchh----------cc--chhhhhhc----cccCCceeeccHHHH
Confidence            48999996 99999999988876 5554 4445443210          00  00000000    0001244556664 5


Q ss_pred             CCCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCcHHHH
Q psy9056         297 FKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPITKI  343 (359)
Q Consensus       297 l~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~l  343 (359)
                      ...+|+||+...  ++...+.++...   ..+.-+++.|+|+.-+++
T Consensus        69 ~~~~DViIDFs~--p~~~~~~~~~a~---~~~~~~ViGTTG~~~~~~  110 (162)
T d1diha1          69 KDDFDVFIDFTR--PEGTLNHLAFCR---QHGKGMVIGTTGFDEAGK  110 (162)
T ss_dssp             TTSCSEEEECSC--HHHHHHHHHHHH---HTTCEEEECCCCCCHHHH
T ss_pred             hcccceEEEecc--HHHHHHHHHHHH---hccceeEEecCCCcHHHH
Confidence            688999999874  433444444333   346767788888876543

>d2f6ia1 c.14.1.1 (A:177-366) Clp protease, ClpP subunit {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Clp protease, ClpP subunit
domain: Clp protease, ClpP subunit
species: Plasmodium falciparum [TaxId: 5833]

Probab=95.32  E-value=0.013  Score=48.62  Aligned_cols=80  Identities=13%  Similarity=0.112  Sum_probs=53.3

Q ss_pred             CCCCchHHHHHHhcC--EEEEecCCceEEeccccCCCCCCCcc---------------hHhHHhhhcCh--HHHHHHHhc
Q psy9056           1 MFAEPSLATVALACH--YRIVVKDKKTGLGLPEVMLGLLPGAG---------------GTQRLPKLTAL--PNVLDMTLT   61 (359)
Q Consensus         1 ~~a~GgG~~lalacD--~ria~~~~~~~~~~pe~~~Gi~p~~g---------------~~~~l~~~~g~--~~a~~~~lt   61 (359)
                      |.|...|..+++++|  .|++.++  ++|-+.+...|..-...               ....+....|.  ....+.+-.
T Consensus        84 G~aaS~a~~i~~aG~kg~R~~~pn--s~imiH~~s~~~~G~~~di~~~~~~l~~~~~~~~~i~a~~tg~~~~~i~~~~~~  161 (190)
T d2f6ia1          84 GLVASMASVILASGKKGKRKSLPN--CRIMIHQPLGNAFGHPQDIEIQTKEILYLKKLLYHYLSSFTNQTVETIEKDSDR  161 (190)
T ss_dssp             EEECHHHHHHHHTSCTTCEEECTT--CEEESSCTTCSCC--------CHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHT
T ss_pred             ccccchhHHHHHhCCCCccccCCC--cEEEEcccccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHhccC
Confidence            356777888888988  6999988  99999998877532111               00112222232  233344445


Q ss_pred             CCCCCHHHHHHcCCcceecCC
Q psy9056          62 GKTLKADKAKKMGIVDQLVEP   82 (359)
Q Consensus        62 g~~~~a~eA~~~Glv~~~~~~   82 (359)
                      -..++|+||+++||||++++.
T Consensus       162 d~~l~a~EAl~~GliD~Ii~~  182 (190)
T d2f6ia1         162 DYYMNALEAKQYGIIDEVIET  182 (190)
T ss_dssp             TCEECHHHHHHHTSCSEECCC
T ss_pred             CeeecHHHHHHcCCCcEEccc
Confidence            566999999999999999975

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=95.29  E-value=0.076  Score=45.68  Aligned_cols=43  Identities=26%  Similarity=0.188  Sum_probs=36.0

Q ss_pred             cEEEEECC-CcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHH
Q psy9056         221 KTVAVLGA-GLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQI  263 (359)
Q Consensus       221 ~kI~IIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~  263 (359)
                      |.+-|-|+ +-+|.++|..|++.|++|++.|++++.+++..+.+
T Consensus         9 K~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~   52 (259)
T d2ae2a_           9 CTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQW   52 (259)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH
Confidence            45556676 67999999999999999999999999888766544

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=95.26  E-value=0.0053  Score=53.27  Aligned_cols=31  Identities=35%  Similarity=0.574  Sum_probs=29.3

Q ss_pred             EEEEECCCcchHHHHHHHHHCCCeeEEecCC
Q psy9056         222 TVAVLGAGLMGAGIAHVTVDKGYNTIVKDSF  252 (359)
Q Consensus       222 kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~  252 (359)
                      -|.|||+|..|.+.|..|+++|++|+++|+.
T Consensus         5 DvvIIGaGi~Gls~A~~La~~G~~V~viE~~   35 (281)
T d2gf3a1           5 DVIVVGAGSMGMAAGYQLAKQGVKTLLVDAF   35 (281)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEeCC
Confidence            3899999999999999999999999999975

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=95.19  E-value=0.0049  Score=54.68  Aligned_cols=35  Identities=20%  Similarity=0.272  Sum_probs=32.2

Q ss_pred             ccEEEEECCCcchHHHHHHHHHCCCeeEEecCCHH
Q psy9056         220 VKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEK  254 (359)
Q Consensus       220 ~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~  254 (359)
                      |-.|.|||+|..|.++|..|+++|++|.+++.++.
T Consensus         1 M~dv~IIGaG~sGl~~A~~L~~~g~~V~iiEk~~~   35 (298)
T d1i8ta1           1 MYDYIIVGSGLFGAVCANELKKLNKKVLVIEKRNH   35 (298)
T ss_dssp             CEEEEEECCSHHHHHHHHHHGGGTCCEEEECSSSS
T ss_pred             CccEEEECCcHHHHHHHHHHHhCCCcEEEEECCCC
Confidence            56899999999999999999999999999998753

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=95.19  E-value=0.008  Score=51.03  Aligned_cols=37  Identities=32%  Similarity=0.536  Sum_probs=34.0

Q ss_pred             CCccEEEEECCCcchHHHHHHHHHCCCeeEEecCCHH
Q psy9056         218 TPVKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEK  254 (359)
Q Consensus       218 ~~~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~  254 (359)
                      ..-++|.|||+|.-|...|..+++.|++|++++.+++
T Consensus        47 ~~~k~VvIIGaGpAGl~aA~~l~~~G~~v~l~E~~~~   83 (233)
T d1djqa3          47 KNKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEK   83 (233)
T ss_dssp             SSCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             cCCceEEEEcccHHHHHHHHHHHHhccceeeEeeccc
Confidence            4558999999999999999999999999999998764

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=95.12  E-value=0.09  Score=45.20  Aligned_cols=43  Identities=23%  Similarity=0.303  Sum_probs=35.7

Q ss_pred             cEEEEECC-CcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHH
Q psy9056         221 KTVAVLGA-GLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQI  263 (359)
Q Consensus       221 ~kI~IIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~  263 (359)
                      |.+-|-|+ +-+|.++|..|++.|++|++.|++++.+++..+.+
T Consensus         6 K~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~   49 (260)
T d1zema1           6 KVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAEASV   49 (260)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH
Confidence            45556676 77999999999999999999999999888765543

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=95.11  E-value=0.065  Score=46.14  Aligned_cols=43  Identities=19%  Similarity=0.256  Sum_probs=35.3

Q ss_pred             cEEEEECC-CcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHH
Q psy9056         221 KTVAVLGA-GLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQI  263 (359)
Q Consensus       221 ~kI~IIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~  263 (359)
                      |.+-|-|+ +-+|.++|..|++.|++|++.|++++.++.....+
T Consensus         5 K~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~~   48 (258)
T d1iy8a_           5 RVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKAAV   48 (258)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH
Confidence            34555576 77999999999999999999999999887765543

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=95.09  E-value=0.0062  Score=51.37  Aligned_cols=34  Identities=15%  Similarity=0.133  Sum_probs=30.5

Q ss_pred             cEEEEECCCcchHHHHHHHHHC--CCeeEEecCCHH
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDK--GYNTIVKDSFEK  254 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~--G~~V~l~d~~~~  254 (359)
                      +||+|||+|.-|.+.|..|.++  |++|++||..+.
T Consensus         2 ~kv~iIGaGpaGl~aA~~L~~~~~~~~V~v~e~~~~   37 (230)
T d1cjca2           2 PQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLV   37 (230)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSS
T ss_pred             CeEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCC
Confidence            4999999999999999999876  789999998864

>d1tg6a1 c.14.1.1 (A:1-193) Clp protease, ClpP subunit {Human (Homo sapiens), mitochondrial [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Clp protease, ClpP subunit
domain: Clp protease, ClpP subunit
species: Human (Homo sapiens), mitochondrial [TaxId: 9606]

Probab=95.08  E-value=0.0095  Score=49.54  Aligned_cols=78  Identities=17%  Similarity=0.137  Sum_probs=53.7

Q ss_pred             CCCCchHHHHHHhcC--EEEEecCCceEEeccccCCCCCCCcchHhH-----------------HhhhcC--hHHHHHHH
Q psy9056           1 MFAEPSLATVALACH--YRIVVKDKKTGLGLPEVMLGLLPGAGGTQR-----------------LPKLTA--LPNVLDMT   59 (359)
Q Consensus         1 ~~a~GgG~~lalacD--~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~-----------------l~~~~g--~~~a~~~~   59 (359)
                      |.|.+.|+.|.+++|  .|++.++  ++|-+-+...|.. +. ....                 +....|  .....+++
T Consensus        93 G~aaS~a~~il~aG~~g~R~~~pn--s~~miHq~~~~~~-G~-~~di~~~~~el~~~~~~i~~i~a~~Tg~~~~~i~~~~  168 (193)
T d1tg6a1          93 GQAASMGSLLLAAGTPGMRHSLPN--SRIMIHQPSGGAR-GQ-ATDIAIQAEEIMKLKKQLYNIYAKHTKQSLQVIESAM  168 (193)
T ss_dssp             EEEETHHHHHHHTSCTTCEEECTT--CEEEECCCCCCCC-SS-HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred             cchHHHHHHHhhcCccCccccCcc--cHHHhcCCccCCC-cC-HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHh
Confidence            467888999999999  5999988  9999988876653 21 1111                 111112  22333444


Q ss_pred             hcCCCCCHHHHHHcCCcceecCC
Q psy9056          60 LTGKTLKADKAKKMGIVDQLVEP   82 (359)
Q Consensus        60 ltg~~~~a~eA~~~Glv~~~~~~   82 (359)
                      -.-..++|+||+++||||+++..
T Consensus       169 ~rD~~lta~EAl~yGliD~Ii~~  191 (193)
T d1tg6a1         169 ERDRYMSPMEAQEFGILDKVLVH  191 (193)
T ss_dssp             SSCEEECHHHHHHHTSCSEECSS
T ss_pred             ccCccCCHHHHHHcCCCCEEccC
Confidence            34455899999999999999965

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.03  E-value=0.0067  Score=51.95  Aligned_cols=33  Identities=21%  Similarity=0.310  Sum_probs=30.7

Q ss_pred             EEEEECCCcchHHHHHHHHHCCC-eeEEecCCHH
Q psy9056         222 TVAVLGAGLMGAGIAHVTVDKGY-NTIVKDSFEK  254 (359)
Q Consensus       222 kI~IIG~G~mG~~iA~~l~~~G~-~V~l~d~~~~  254 (359)
                      +|.|||+|.-|..+|..|.++|+ +|++++++++
T Consensus         3 ~V~IvGaG~aGl~~A~~L~~~Gi~~V~V~Er~~~   36 (288)
T d3c96a1           3 DILIAGAGIGGLSCALALHQAGIGKVTLLESSSE   36 (288)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSS
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCeEEEEeCCCC
Confidence            89999999999999999999995 8999998764

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.98  E-value=0.075  Score=45.38  Aligned_cols=41  Identities=22%  Similarity=0.220  Sum_probs=33.9

Q ss_pred             cEEEEECC-CcchHHHHHHHHHCCCeeEEecCCHHHHHHHHH
Q psy9056         221 KTVAVLGA-GLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLG  261 (359)
Q Consensus       221 ~kI~IIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~  261 (359)
                      |.+-|-|+ +-+|.++|..|++.|++|++.|+++++++...+
T Consensus         7 K~alITGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~   48 (244)
T d1nffa_           7 KVALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEGKAMAA   48 (244)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence            34555576 779999999999999999999999988776543

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=94.98  E-value=0.09  Score=45.47  Aligned_cols=44  Identities=23%  Similarity=0.237  Sum_probs=36.4

Q ss_pred             cEEEEECC-CcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHH
Q psy9056         221 KTVAVLGA-GLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIK  264 (359)
Q Consensus       221 ~kI~IIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~  264 (359)
                      |.+-|.|+ +-+|.++|..|++.|++|++.|++++++++..+.++
T Consensus         6 K~alVTGas~GIG~aia~~la~~Ga~V~l~~r~~~~l~~~~~~l~   50 (272)
T d1xkqa_           6 KTVIITGSSNGIGRTTAILFAQEGANVTITGRSSERLEETRQIIL   50 (272)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHH
T ss_pred             CEEEEeCcCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHH
Confidence            44555575 889999999999999999999999998887665443

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=94.95  E-value=0.062  Score=43.46  Aligned_cols=41  Identities=20%  Similarity=0.246  Sum_probs=36.9

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCC-eeEEecCCHHHHHHHHH
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGY-NTIVKDSFEKGLARGLG  261 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~-~V~l~d~~~~~l~~~~~  261 (359)
                      ..|.|+|+|-+|......+...|. +|+..|.++++++.+++
T Consensus        31 ~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~   72 (176)
T d1d1ta2          31 STCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMA   72 (176)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH
T ss_pred             CEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHh
Confidence            579999999999999999999995 89999999999887654

>d2g17a1 c.2.1.3 (A:1-153,A:309-334) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC
species: Salmonella typhimurium [TaxId: 90371]

Probab=94.92  E-value=0.012  Score=48.16  Aligned_cols=104  Identities=17%  Similarity=0.114  Sum_probs=56.1

Q ss_pred             ccEEEEECC-CcchHHHHHHHHHC-CCeeEEe-cCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-C
Q psy9056         220 VKTVAVLGA-GLMGAGIAHVTVDK-GYNTIVK-DSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-D  295 (359)
Q Consensus       220 ~~kI~IIG~-G~mG~~iA~~l~~~-G~~V~l~-d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~  295 (359)
                      |.||+|||+ |+.|.-+.+.|.++ .++|.-+ -.+.+...  -+.+...........          ........+. .
T Consensus         1 MikVaIiGATGyvG~eLlrlL~~HP~~ei~~l~~~s~~~~a--Gk~~~~~~~~~~~~~----------~~~~~~~~~~~~   68 (179)
T d2g17a1           1 MLNTLIVGASGYAGAELVSYVNRHPHMTITALTVSAQSNDA--GKLISDLHPQLKGIV----------DLPLQPMSDVRD   68 (179)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHCTTEEEEEEEEETTCTTT--TCBHHHHCGGGTTTC----------CCBEEEESCGGG
T ss_pred             CcEEEEECcccHHHHHHHHHHHhCCCCceEeeEeecccccc--ccccccccccccccc----------ccccccchhhhh
Confidence            689999996 99999999999987 5566433 22111000  000000000000000          0011112222 3


Q ss_pred             CCCCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCcH
Q psy9056         296 PFKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPI  340 (359)
Q Consensus       296 ~l~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~  340 (359)
                      ...++|++|.|+|....  .+....+.+   .++.+++.++....
T Consensus        69 ~~~~~dvvf~alp~~~s--~~~~~~~~~---~~~~vIDlSadfRl  108 (179)
T d2g17a1          69 FSADVDVVFLATAHEVS--HDLAPQFLQ---AGCVVFDLSGAFRV  108 (179)
T ss_dssp             TCTTCCEEEECSCHHHH--HHHHHHHHH---TTCEEEECSSTTSS
T ss_pred             hhcccceeeccccchhH--HHHhhhhhh---cCceeecccccccc
Confidence            45789999999986553  344444433   57888888875543

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=94.92  E-value=0.04  Score=44.59  Aligned_cols=41  Identities=20%  Similarity=0.053  Sum_probs=35.9

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCC-eeEEecCCHHHHHHHHH
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGY-NTIVKDSFEKGLARGLG  261 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~-~V~l~d~~~~~l~~~~~  261 (359)
                      .+|.|+|+|.+|...+..+...|. +|++.|.++++++.+++
T Consensus        29 ~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~   70 (174)
T d1jqba2          29 SSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKF   70 (174)
T ss_dssp             CCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHH
T ss_pred             CEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHh
Confidence            579999999999999999998896 79999999998776643

>d1yg6a1 c.14.1.1 (A:11-193) Clp protease, ClpP subunit {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Clp protease, ClpP subunit
domain: Clp protease, ClpP subunit
species: Escherichia coli [TaxId: 562]

Probab=94.88  E-value=0.0043  Score=51.23  Aligned_cols=77  Identities=19%  Similarity=0.175  Sum_probs=52.2

Q ss_pred             CCCCchHHHHHHhcC--EEEEecCCceEEeccccCCCCCCCcchHhHH------------------hhhcC--hHHHHHH
Q psy9056           1 MFAEPSLATVALACH--YRIVVKDKKTGLGLPEVMLGLLPGAGGTQRL------------------PKLTA--LPNVLDM   58 (359)
Q Consensus         1 ~~a~GgG~~lalacD--~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l------------------~~~~g--~~~a~~~   58 (359)
                      |.|...|..|.++||  .|++.++  ++|-+-+...|..   |-..-+                  ....|  .....++
T Consensus        83 G~aaS~a~~I~~ag~~~~R~~~~n--s~~miH~~~~~~~---G~~~~i~~~~~~~~~~~~~~~~~~~~~tg~~~e~i~~~  157 (183)
T d1yg6a1          83 GQAASMGAFLLTAGAKGKRFCLPN--SRVMIHQPLGGYQ---GQATDIEIHAREILKVKGRMNELMALHTGQSLEQIERD  157 (183)
T ss_dssp             EEEETHHHHHHHTSCTTCEEECTT--CEEEECCCEEEEE---EEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred             EEeHHHHHHHHHcCCCCceeeCCC--ceEEecccccccc---cCHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHH
Confidence            457788888888898  7999988  9998888766542   211111                  11112  2233344


Q ss_pred             HhcCCCCCHHHHHHcCCcceecCC
Q psy9056          59 TLTGKTLKADKAKKMGIVDQLVEP   82 (359)
Q Consensus        59 ~ltg~~~~a~eA~~~Glv~~~~~~   82 (359)
                      +-.-..++|+||+++||||+++..
T Consensus       158 ~~~d~~lta~EAl~~GliD~Ii~~  181 (183)
T d1yg6a1         158 TERDRFLSAPEAVEYGLVDSILTH  181 (183)
T ss_dssp             TSSCEEEEHHHHHHHTSSSEECCC
T ss_pred             hccCccccHHHHHHcCCCcEEecc
Confidence            434455899999999999999975

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

Probab=94.86  E-value=0.075  Score=45.19  Aligned_cols=39  Identities=28%  Similarity=0.326  Sum_probs=33.2

Q ss_pred             cEEEEECC-CcchHHHHHHHHHCCCeeEEecCCHHHHHHH
Q psy9056         221 KTVAVLGA-GLMGAGIAHVTVDKGYNTIVKDSFEKGLARG  259 (359)
Q Consensus       221 ~kI~IIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~  259 (359)
                      |++-|.|+ +.+|.++|..|++.|++|++.+++.+++++.
T Consensus         6 K~alItGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~   45 (241)
T d2a4ka1           6 KTILVTGAASGIGRAALDLFAREGASLVAVDREERLLAEA   45 (241)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHH
Confidence            45667786 6699999999999999999999999876643

>d2nvwa1 c.2.1.3 (A:2-154,A:374-457) Galactose/lactose metabolism regulatory protein GAL80 {Yeast (Kluyveromyces lactis) [TaxId: 28985]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Galactose/lactose metabolism regulatory protein GAL80
species: Yeast (Kluyveromyces lactis) [TaxId: 28985]

Probab=94.85  E-value=0.036  Score=47.17  Aligned_cols=75  Identities=15%  Similarity=0.151  Sum_probs=45.5

Q ss_pred             CCccEEEEECCCcchHHHHH----HHHHC--CCeeE-EecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhccccc
Q psy9056         218 TPVKTVAVLGAGLMGAGIAH----VTVDK--GYNTI-VKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVG  290 (359)
Q Consensus       218 ~~~~kI~IIG~G~mG~~iA~----~l~~~--G~~V~-l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~  290 (359)
                      .+--||||||+|.+|.-++.    .+.+.  +++|+ ++|+++++.+...+..+           +         .....
T Consensus        14 ~k~irvgiIG~G~~~~~~~~~h~~ai~~~~~~~~ivav~d~~~~~~~~~~~~~~-----------~---------~~~~~   73 (237)
T d2nvwa1          14 SRPIRVGFVGLTSGKSWVAKTHFLAIQQLSSQFQIVALYNPTLKSSLQTIEQLQ-----------L---------KHATG   73 (237)
T ss_dssp             GCCEEEEEECCCSTTSHHHHTHHHHHHHTTTTEEEEEEECSCHHHHHHHHHHTT-----------C---------TTCEE
T ss_pred             CCCeEEEEEecCccccHHHHHHHHHHHhcCCCeEEEEEEcCCHHHHHHHHHhcc-----------c---------cccee
Confidence            34459999999987654443    34332  56765 78999988765433211           0         01122


Q ss_pred             ccCcCC-C--CCccEEEEcccCCHH
Q psy9056         291 TLSYDP-F--KNADMVIEAVFEDIN  312 (359)
Q Consensus       291 ~~~~~~-l--~~aD~Vi~avp~~~~  312 (359)
                      .++++. +  .+.|+|++|+|.+..
T Consensus        74 ~~~~~~l~~~~~iD~V~i~tp~~~h   98 (237)
T d2nvwa1          74 FDSLESFAQYKDIDMIVVSVKVPEH   98 (237)
T ss_dssp             ESCHHHHHHCTTCSEEEECSCHHHH
T ss_pred             ecchhhcccccccceeeccCCCcch
Confidence            234432 2  568999999996664

>d1iuka_ c.2.1.8 (A:) Hypothetical protein TT1466 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein TT1466
species: Thermus thermophilus [TaxId: 274]

Probab=94.84  E-value=0.037  Score=43.02  Aligned_cols=94  Identities=21%  Similarity=0.166  Sum_probs=63.4

Q ss_pred             cEEEEECC----CcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcCC
Q psy9056         221 KTVAVLGA----GLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDP  296 (359)
Q Consensus       221 ~kI~IIG~----G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  296 (359)
                      ++|+|||+    +..|-.+...+.+.||+++.+..++..                           .......+..++.+
T Consensus        14 ksIAVVGaS~~~~k~g~~v~~~L~~~g~~~~~v~~~~~~---------------------------~~i~g~~~~~~l~~   66 (136)
T d1iuka_          14 KTIAVLGAHKDPSRPAHYVPRYLREQGYRVLPVNPRFQG---------------------------EELFGEEAVASLLD   66 (136)
T ss_dssp             CEEEEETCCSSTTSHHHHHHHHHHHTTCEEEEECGGGTT---------------------------SEETTEECBSSGGG
T ss_pred             CeEEEEeecCCCCCchHHHHHHHhcCCCCceEEEecccc---------------------------ceeeceecccchhh
Confidence            68999996    889999999999999999999987531                           00112344455545


Q ss_pred             C-CCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCcHHHHHhh
Q psy9056         297 F-KNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPITKIAAA  346 (359)
Q Consensus       297 l-~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~l~~~  346 (359)
                      + ...|+|+.++|...  ..+++++..+. ....+++  .+|..-+++.+.
T Consensus        67 i~~~iD~v~v~~p~~~--v~~~v~~~~~~-g~k~i~~--q~G~~~~e~~~~  112 (136)
T d1iuka_          67 LKEPVDILDVFRPPSA--LMDHLPEVLAL-RPGLVWL--QSGIRHPEFEKA  112 (136)
T ss_dssp             CCSCCSEEEECSCHHH--HTTTHHHHHHH-CCSCEEE--CTTCCCHHHHHH
T ss_pred             ccCCCceEEEeccHHH--HHHHHHHHHhh-CCCeEEE--ecCccCHHHHHH
Confidence            4 55799999997444  66788887665 3455554  344444444433

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.84  E-value=0.017  Score=46.45  Aligned_cols=41  Identities=20%  Similarity=0.239  Sum_probs=36.2

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHH
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLG  261 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~  261 (359)
                      .+|.|+|+|.+|...+..+...|.+|+.+|+++++++.+++
T Consensus        29 ~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~~k~~~a~~   69 (168)
T d1piwa2          29 KKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAMK   69 (168)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHH
T ss_pred             CEEEEECCCCcchhHHHHhhhccccccccccchhHHHHhhc
Confidence            68999999999999888888889999999999998776543

>d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Leucine dehydrogenase
species: Bacillus sphaericus [TaxId: 1421]

Probab=94.83  E-value=0.089  Score=44.59  Aligned_cols=42  Identities=17%  Similarity=0.241  Sum_probs=37.7

Q ss_pred             ccEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHH
Q psy9056         220 VKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLG  261 (359)
Q Consensus       220 ~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~  261 (359)
                      =++|.|-|.|++|..+|..|.+.|..|+..|.++..++....
T Consensus        39 g~~v~IqG~GnVG~~~a~~L~~~Gakvv~~d~~~~~~~~~~~   80 (230)
T d1leha1          39 GLAVSVQGLGNVAKALCKKLNTEGAKLVVTDVNKAAVSAAVA   80 (230)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEeecccHHHHHHHHH
Confidence            379999999999999999999999999999999988766543

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=94.79  E-value=0.09  Score=45.09  Aligned_cols=43  Identities=23%  Similarity=0.317  Sum_probs=35.4

Q ss_pred             EEEEE-CC-CcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHH
Q psy9056         222 TVAVL-GA-GLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIK  264 (359)
Q Consensus       222 kI~II-G~-G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~  264 (359)
                      |++|| |+ +-+|.++|..|++.|++|++.+++++.+++..+.++
T Consensus        12 K~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~l~   56 (255)
T d1fmca_          12 KCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQ   56 (255)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHH
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHH
Confidence            45554 64 889999999999999999999999998887665443

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=94.75  E-value=0.026  Score=45.64  Aligned_cols=41  Identities=22%  Similarity=0.200  Sum_probs=34.4

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCCe-eEEecCCHHHHHHHHH
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGYN-TIVKDSFEKGLARGLG  261 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~~-V~l~d~~~~~l~~~~~  261 (359)
                      .+|.|+|+|.+|...+..+...|.. |++.|.++++++.+++
T Consensus        30 ~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~   71 (174)
T d1f8fa2          30 SSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQ   71 (174)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHH
T ss_pred             CEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHH
Confidence            6899999999999999998888875 5677999988776543

>d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.74  E-value=0.072  Score=41.31  Aligned_cols=81  Identities=19%  Similarity=0.195  Sum_probs=50.8

Q ss_pred             EEEEECC-CcchHHHHHHHHHC-CCeeE-EecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcCCCC
Q psy9056         222 TVAVLGA-GLMGAGIAHVTVDK-GYNTI-VKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPFK  298 (359)
Q Consensus       222 kI~IIG~-G~mG~~iA~~l~~~-G~~V~-l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~  298 (359)
                      ||+|+|+ |.||..++..+.+. ++++. .+|+.... .                             .+       ...
T Consensus         1 kI~v~Ga~GrMG~~i~~~i~~~~~~~l~~~~d~~~~~-~-----------------------------~~-------~~~   43 (135)
T d1yl7a1           1 RVGVLGAKGKVGATMVRAVAAADDLTLSAELDAGDPL-S-----------------------------LL-------TDG   43 (135)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHSTTSEEEEEECTTCCT-H-----------------------------HH-------HTT
T ss_pred             CEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCch-h-----------------------------hh-------ccc
Confidence            7999995 99999999887665 55543 44543210 0                             00       125


Q ss_pred             CccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCcHHHHH
Q psy9056         299 NADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPITKIA  344 (359)
Q Consensus       299 ~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~l~  344 (359)
                      ++|+||+....+.  ....++...+   .+.-+++.|+|++.+++.
T Consensus        44 ~~DvvIDFS~p~~--~~~~~~~~~~---~~~~~ViGTTG~~~~~~~   84 (135)
T d1yl7a1          44 NTEVVIDFTHPDV--VMGNLEFLID---NGIHAVVGTTGFTAERFQ   84 (135)
T ss_dssp             TCSEEEECCCTTT--HHHHHHHHHH---TTCEEEECCCCCCHHHHH
T ss_pred             cCCEEEEcccHHH--HHHHHHHHHh---cCCCEEEeccccchhHHH
Confidence            6899999774444  3355554443   456667889998865443

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=94.74  E-value=0.076  Score=45.49  Aligned_cols=43  Identities=19%  Similarity=0.275  Sum_probs=36.0

Q ss_pred             cEEEEECC-CcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHH
Q psy9056         221 KTVAVLGA-GLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQI  263 (359)
Q Consensus       221 ~kI~IIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~  263 (359)
                      |.+-|-|+ +-+|.++|..|++.|++|++.|++++.+++..+.+
T Consensus         6 K~~lITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l   49 (251)
T d1vl8a_           6 RVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKL   49 (251)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH
Confidence            45667776 77999999999999999999999999887765543

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=94.71  E-value=0.097  Score=45.11  Aligned_cols=41  Identities=20%  Similarity=0.259  Sum_probs=34.0

Q ss_pred             cEEEEECC-CcchHHHHHHHHHCCCeeEEecCCHHHHHHHHH
Q psy9056         221 KTVAVLGA-GLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLG  261 (359)
Q Consensus       221 ~kI~IIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~  261 (359)
                      |.+-|.|+ +-+|.++|..|++.|++|++.|++++++++..+
T Consensus         7 KvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~   48 (268)
T d2bgka1           7 KVAIITGGAGGIGETTAKLFVRYGAKVVIADIADDHGQKVCN   48 (268)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence            44555575 779999999999999999999999988776544

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=94.70  E-value=0.032  Score=44.83  Aligned_cols=41  Identities=22%  Similarity=0.139  Sum_probs=34.1

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCC-eeEEecCCHHHHHHHHH
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGY-NTIVKDSFEKGLARGLG  261 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~-~V~l~d~~~~~l~~~~~  261 (359)
                      .+|.|+|+|.+|...+..+...|. .|++.|.++++++.+++
T Consensus        34 ~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~   75 (172)
T d1h2ba2          34 AYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAER   75 (172)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHH
T ss_pred             CEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHhh
Confidence            689999999999998888877775 78888999988776543

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=94.68  E-value=0.11  Score=44.97  Aligned_cols=44  Identities=23%  Similarity=0.277  Sum_probs=36.1

Q ss_pred             cEEEEECC-CcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHH
Q psy9056         221 KTVAVLGA-GLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIK  264 (359)
Q Consensus       221 ~kI~IIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~  264 (359)
                      |++-|-|+ +-+|.++|..|++.|++|++.|++++++++..+.+.
T Consensus         5 K~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i~   49 (274)
T d1xhla_           5 KSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRLEETKQQIL   49 (274)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHH
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHH
Confidence            34555565 779999999999999999999999998887665443

>d2csua1 c.2.1.8 (A:1-129) Acetate-CoA ligase alpha chain, AcdA, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Acetate-CoA ligase alpha chain, AcdA, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=94.65  E-value=0.019  Score=44.45  Aligned_cols=80  Identities=15%  Similarity=0.106  Sum_probs=55.5

Q ss_pred             cEEEEECC----CcchHHHHHHHHHCC-CeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcC
Q psy9056         221 KTVAVLGA----GLMGAGIAHVTVDKG-YNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYD  295 (359)
Q Consensus       221 ~kI~IIG~----G~mG~~iA~~l~~~G-~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~  295 (359)
                      ++|+|||+    |.+|..+...+...| ++|+.++...+.                             ...+.+..+++
T Consensus         9 ksIAVVGaS~~~~~~g~~v~~~L~~~~~g~v~pVnP~~~~-----------------------------i~G~~~y~sl~   59 (129)
T d2csua1           9 KGIAVIGASNDPKKLGYEVFKNLKEYKKGKVYPVNIKEEE-----------------------------VQGVKAYKSVK   59 (129)
T ss_dssp             SEEEEETCCSCTTSHHHHHHHHHTTCCSSEEEEECSSCSE-----------------------------ETTEECBSSTT
T ss_pred             CeEEEEccCCCCCCcHHHHHHHHHHcCCCcEEEeccCccc-----------------------------cCCeEeecchh
Confidence            78999997    888888888887665 688888876431                             12344555665


Q ss_pred             CC-CCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEE
Q psy9056         296 PF-KNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVV  331 (359)
Q Consensus       296 ~l-~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii  331 (359)
                      ++ ...|++++++|...  ..++++++.+.--...++
T Consensus        60 dlp~~vDlvvi~vp~~~--~~~~~~~~~~~g~~~~vi   94 (129)
T d2csua1          60 DIPDEIDLAIIVVPKRF--VKDTLIQCGEKGVKGVVI   94 (129)
T ss_dssp             SCSSCCSEEEECSCHHH--HHHHHHHHHHHTCCEEEE
T ss_pred             hcCCCCceEEEecChHH--hHHHHHHHHHcCCCEEEE
Confidence            55 45899999997444  668888877653333333

>d2d59a1 c.2.1.8 (A:4-142) Hypothetical protein PH1109 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein PH1109
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=94.63  E-value=0.071  Score=41.55  Aligned_cols=79  Identities=13%  Similarity=0.065  Sum_probs=56.5

Q ss_pred             cEEEEECC----CcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcCC
Q psy9056         221 KTVAVLGA----GLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDP  296 (359)
Q Consensus       221 ~kI~IIG~----G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  296 (359)
                      ++|+|||+    +..|..+...+.++||+|+.++...+.                             .....+-.++++
T Consensus        20 ksIAVVGaS~~~~~~g~~v~~~L~~~g~~v~pVnP~~~~-----------------------------i~G~~~~~sl~d   70 (139)
T d2d59a1          20 KKIALVGASPKPERDANIVMKYLLEHGYDVYPVNPKYEE-----------------------------VLGRKCYPSVLD   70 (139)
T ss_dssp             CEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSE-----------------------------ETTEECBSSGGG
T ss_pred             CeEEEEeecCCCCCchHHHHHHHHHCCCEEEEECCcccc-----------------------------cCCCcccccccc
Confidence            68999996    679999999999999999988865321                             112334445544


Q ss_pred             C-CCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEE
Q psy9056         297 F-KNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVV  331 (359)
Q Consensus       297 l-~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii  331 (359)
                      + ...|+|++++|  .+...++++++.+. +...++
T Consensus        71 lp~~iD~v~i~vp--~~~~~~~~~e~~~~-g~k~v~  103 (139)
T d2d59a1          71 IPDKIEVVDLFVK--PKLTMEYVEQAIKK-GAKVVW  103 (139)
T ss_dssp             CSSCCSEEEECSC--HHHHHHHHHHHHHH-TCSEEE
T ss_pred             cCccceEEEEEeC--HHHHHHHHHHHHHh-CCCEEE
Confidence            4 46899999997  44467888887765 334444

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=94.58  E-value=0.011  Score=47.07  Aligned_cols=33  Identities=21%  Similarity=0.200  Sum_probs=30.3

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCC--eeEEecCCH
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGY--NTIVKDSFE  253 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~--~V~l~d~~~  253 (359)
                      |||.|||+|..|..+|..|.+.|.  +|+++++++
T Consensus         3 krivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~   37 (186)
T d1fcda1           3 RKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNT   37 (186)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCS
T ss_pred             CcEEEECccHHHHHHHHHHHHcCCCCcEEEEECCC
Confidence            699999999999999999999885  789999876

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

Probab=94.56  E-value=0.097  Score=44.53  Aligned_cols=40  Identities=25%  Similarity=0.307  Sum_probs=33.5

Q ss_pred             EEEEE-CC-CcchHHHHHHHHHCCCeeEEecCCHHHHHHHHH
Q psy9056         222 TVAVL-GA-GLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLG  261 (359)
Q Consensus       222 kI~II-G~-G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~  261 (359)
                      |++|| |+ +-+|.++|..|++.|++|++.|++++.+++..+
T Consensus         5 K~alITGas~GIG~a~a~~l~~~G~~Vv~~~r~~~~l~~~~~   46 (243)
T d1q7ba_           5 KIALVTGASRGIGRAIAETLAARGAKVIGTATSENGAQAISD   46 (243)
T ss_dssp             CEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH
Confidence            45555 75 789999999999999999999999988776544

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=94.55  E-value=0.061  Score=46.16  Aligned_cols=41  Identities=17%  Similarity=0.171  Sum_probs=33.4

Q ss_pred             cEEEEECC-CcchHHHHHHHHHCCCeeEEecCCHHHHHHHHH
Q psy9056         221 KTVAVLGA-GLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLG  261 (359)
Q Consensus       221 ~kI~IIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~  261 (359)
                      |.+-|-|+ +-+|.++|..|++.|++|++.|++++.+++..+
T Consensus         7 K~alITGas~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~~   48 (253)
T d1hxha_           7 KVALVTGGASGVGLEVVKLLLGEGAKVAFSDINEAAGQQLAA   48 (253)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence            34445575 779999999999999999999999988776543

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.52  E-value=0.0098  Score=52.35  Aligned_cols=31  Identities=32%  Similarity=0.579  Sum_probs=29.3

Q ss_pred             EEEECCCcchHHHHHHHHHCCCeeEEecCCH
Q psy9056         223 VAVLGAGLMGAGIAHVTVDKGYNTIVKDSFE  253 (359)
Q Consensus       223 I~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~  253 (359)
                      |.|||+|.-|.+.|..|+++|++|+++|.++
T Consensus         2 ViVIGaG~aGL~aA~~L~~~G~~V~VlE~~~   32 (383)
T d2v5za1           2 VVVVGGGISGMAAAKLLHDSGLNVVVLEARD   32 (383)
T ss_dssp             EEEECCBHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             EEEECCCHHHHHHHHHHHhCCCCEEEEecCC
Confidence            7899999999999999999999999999764

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

Probab=94.46  E-value=0.12  Score=44.20  Aligned_cols=40  Identities=15%  Similarity=0.184  Sum_probs=33.0

Q ss_pred             EEEEECC-CcchHHHHHHHHHCCCeeEEecCCHHHHHHHHH
Q psy9056         222 TVAVLGA-GLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLG  261 (359)
Q Consensus       222 kI~IIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~  261 (359)
                      .+-|-|+ +-+|.++|..|++.|++|++.+++++.++...+
T Consensus         8 ~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~   48 (251)
T d1zk4a1           8 VAIITGGTLGIGLAIATKFVEEGAKVMITGRHSDVGEKAAK   48 (251)
T ss_dssp             EEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence            3444464 789999999999999999999999988776543

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.45  E-value=0.082  Score=45.70  Aligned_cols=44  Identities=14%  Similarity=0.102  Sum_probs=37.0

Q ss_pred             cEEEEE--CCCcchHHHHHHHHHC-CCeeEEecCCHHHHHHHHHHHH
Q psy9056         221 KTVAVL--GAGLMGAGIAHVTVDK-GYNTIVKDSFEKGLARGLGQIK  264 (359)
Q Consensus       221 ~kI~II--G~G~mG~~iA~~l~~~-G~~V~l~d~~~~~l~~~~~~~~  264 (359)
                      ++|+||  |.+-+|..+|..|++. |..|++.+|+++++++..+.++
T Consensus         3 ~rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~~~~~~~~~~~l~   49 (275)
T d1wmaa1           3 IHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQ   49 (275)
T ss_dssp             CCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHH
Confidence            689888  5588999999999975 8999999999999888766543

>d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase
species: Pseudomonas sp., lb400 [TaxId: 306]

Probab=94.42  E-value=0.1  Score=45.19  Aligned_cols=41  Identities=22%  Similarity=0.229  Sum_probs=34.4

Q ss_pred             cEEEEECC-CcchHHHHHHHHHCCCeeEEecCCHHHHHHHHH
Q psy9056         221 KTVAVLGA-GLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLG  261 (359)
Q Consensus       221 ~kI~IIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~  261 (359)
                      |.+-|-|+ +-+|.++|..|++.|++|++.|++++++++..+
T Consensus         6 K~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~   47 (276)
T d1bdba_           6 EAVLITGGASGLGRALVDRFVAEGAKVAVLDKSAERLAELET   47 (276)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence            45556675 899999999999999999999999988776443

>d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.41  E-value=0.024  Score=45.94  Aligned_cols=72  Identities=15%  Similarity=0.196  Sum_probs=53.0

Q ss_pred             cEEEEECC-CcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcCCCCC
Q psy9056         221 KTVAVLGA-GLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPFKN  299 (359)
Q Consensus       221 ~kI~IIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~  299 (359)
                      ++|.|||- ..+|.++|.+|.+.|..|++++.....+.                                     +.+.+
T Consensus        40 k~vvVIGrS~iVGrPLa~lL~~~gatVt~~~~~t~~l~-------------------------------------~~~~~   82 (170)
T d1a4ia1          40 RHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSKTAHLD-------------------------------------EEVNK   82 (170)
T ss_dssp             CEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCSSHH-------------------------------------HHHTT
T ss_pred             ceEEEEecCCccchHHHHHHHhccCceEEEecccccHH-------------------------------------HHHhh
Confidence            78999997 66999999999999999999987643322                                     12567


Q ss_pred             ccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCC
Q psy9056         300 ADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTS  336 (359)
Q Consensus       300 aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts  336 (359)
                      +|++|.++...--+     +  .++++++.+|++...
T Consensus        83 aDivi~a~G~~~~i-----~--~~~vk~g~iviDvgi  112 (170)
T d1a4ia1          83 GDILVVATGQPEMV-----K--GEWIKPGAIVIDCGI  112 (170)
T ss_dssp             CSEEEECCCCTTCB-----C--GGGSCTTCEEEECCC
T ss_pred             ccchhhcccccccc-----c--cccccCCCeEeccCc
Confidence            88888888643322     1  345778888877654

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

Probab=94.36  E-value=0.13  Score=44.03  Aligned_cols=40  Identities=28%  Similarity=0.334  Sum_probs=34.2

Q ss_pred             cEEEEECC-CcchHHHHHHHHHCCCeeEEecCCHHHHHHHH
Q psy9056         221 KTVAVLGA-GLMGAGIAHVTVDKGYNTIVKDSFEKGLARGL  260 (359)
Q Consensus       221 ~kI~IIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~  260 (359)
                      |.+-|-|+ +-+|.++|..|++.|++|++.|++++++++..
T Consensus         6 K~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~   46 (254)
T d1hdca_           6 KTVIITGGARGLGAEAARQAVAAGARVVLADVLDEEGAATA   46 (254)
T ss_dssp             SEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred             CEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence            56777786 67999999999999999999999998776543

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=94.30  E-value=0.14  Score=43.97  Aligned_cols=43  Identities=26%  Similarity=0.139  Sum_probs=36.0

Q ss_pred             cEEEEECC-CcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHH
Q psy9056         221 KTVAVLGA-GLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQI  263 (359)
Q Consensus       221 ~kI~IIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~  263 (359)
                      |++-|-|+ +-+|.++|..|++.|++|++.+++++.+++..+.+
T Consensus         9 K~alVTGas~GIG~aiA~~la~~Ga~V~~~~r~~~~l~~~~~~~   52 (259)
T d1xq1a_           9 KTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEYELNECLSKW   52 (259)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH
Confidence            45666675 77999999999999999999999999888765543

>d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Bacterial sepiapterin reductase
species: Chlorobium tepidum [TaxId: 1097]

Probab=94.23  E-value=0.15  Score=43.12  Aligned_cols=43  Identities=16%  Similarity=0.152  Sum_probs=34.9

Q ss_pred             cEEEEE-CC-CcchHHHHHHHHHCCCe-------eEEecCCHHHHHHHHHHH
Q psy9056         221 KTVAVL-GA-GLMGAGIAHVTVDKGYN-------TIVKDSFEKGLARGLGQI  263 (359)
Q Consensus       221 ~kI~II-G~-G~mG~~iA~~l~~~G~~-------V~l~d~~~~~l~~~~~~~  263 (359)
                      |+|.+| |+ +-+|.++|..|++.|++       |++++++++.+++....+
T Consensus         1 K~VvlITGas~GIG~aia~~la~~G~~~~~~~~~v~~~~r~~~~l~~~~~~~   52 (240)
T d2bd0a1           1 KHILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLEC   52 (240)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHHH
T ss_pred             CCEEEEccCCCHHHHHHHHHHHHhCccccccCcEEEEEeCCHHHHHHHHHHH
Confidence            466655 76 77999999999999987       999999999888765433

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.19  E-value=0.11  Score=44.55  Aligned_cols=40  Identities=33%  Similarity=0.358  Sum_probs=33.8

Q ss_pred             cEEEEECC-CcchHHHHHHHHHCCCeeEEecCCHHHHHHHH
Q psy9056         221 KTVAVLGA-GLMGAGIAHVTVDKGYNTIVKDSFEKGLARGL  260 (359)
Q Consensus       221 ~kI~IIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~  260 (359)
                      |.+-|-|+ +-+|.++|..|++.|++|++.|++++.+++..
T Consensus         7 K~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~   47 (250)
T d1ydea1           7 KVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDESGGRALE   47 (250)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence            45666675 88999999999999999999999998876543

>d1vkna1 c.2.1.3 (A:1-144,A:308-339) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC
species: Thermotoga maritima [TaxId: 2336]

Probab=94.16  E-value=0.0098  Score=48.72  Aligned_cols=96  Identities=10%  Similarity=0.109  Sum_probs=55.0

Q ss_pred             ccEEEEECC-CcchHHHHHHHHHCCC-eeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhccccc-ccCcC-
Q psy9056         220 VKTVAVLGA-GLMGAGIAHVTVDKGY-NTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVG-TLSYD-  295 (359)
Q Consensus       220 ~~kI~IIG~-G~mG~~iA~~l~~~G~-~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~-~~~~~-  295 (359)
                      |.||+|+|+ |+.|.-+.+.|.++-+ +|..+--+...    -+.+....+..              ...... ..+.+ 
T Consensus         1 MikVaIvGATGyvG~eLirlL~~HP~~ei~~l~s~~~a----G~~i~~~~p~~--------------~~~~~~~~~~~~~   62 (176)
T d1vkna1           1 MIRAGIIGATGYTGLELVRLLKNHPEAKITYLSSRTYA----GKKLEEIFPST--------------LENSILSEFDPEK   62 (176)
T ss_dssp             CEEEEEESTTSHHHHHHHHHHHHCTTEEEEEEECSTTT----TSBHHHHCGGG--------------CCCCBCBCCCHHH
T ss_pred             CeEEEEECCCcHHHHHHHHHHHhCCCceEEEeeccccC----CCcccccCchh--------------hccccccccCHhH
Confidence            679999997 9999999999988643 55544222111    00111111100              011111 11222 


Q ss_pred             CCCCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCcH
Q psy9056         296 PFKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPI  340 (359)
Q Consensus       296 ~l~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~  340 (359)
                      ...++|+|+.|+|.....  ...    .. ..++.|+++++....
T Consensus        63 ~~~~~dvvf~a~p~~~s~--~~~----~~-~~~~~VIDlSadfRl  100 (176)
T d1vkna1          63 VSKNCDVLFTALPAGASY--DLV----RE-LKGVKIIDLGADFRF  100 (176)
T ss_dssp             HHHHCSEEEECCSTTHHH--HHH----TT-CCSCEEEESSSTTTC
T ss_pred             hccccceEEEccccHHHH--HHH----Hh-hccceEEecCccccc
Confidence            235799999999987743  222    22 257888899987654

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sorbitol dehydrogenase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=94.16  E-value=0.12  Score=44.20  Aligned_cols=41  Identities=20%  Similarity=0.206  Sum_probs=34.1

Q ss_pred             cEEEEECC-CcchHHHHHHHHHCCCeeEEecCCHHHHHHHHH
Q psy9056         221 KTVAVLGA-GLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLG  261 (359)
Q Consensus       221 ~kI~IIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~  261 (359)
                      |++-|-|+ +-+|.++|..|++.|++|++.|++.+.+++..+
T Consensus         6 K~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~   47 (256)
T d1k2wa_           6 KTALITGSARGIGRAFAEAYVREGARVAIADINLEAARATAA   47 (256)
T ss_dssp             EEEEEETCSSHHHHHHHHHHHHTTEEEEEEESCHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence            34555575 889999999999999999999999988776543

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=94.14  E-value=0.054  Score=46.63  Aligned_cols=43  Identities=19%  Similarity=0.180  Sum_probs=34.4

Q ss_pred             cEEEEECC-CcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHH
Q psy9056         221 KTVAVLGA-GLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQI  263 (359)
Q Consensus       221 ~kI~IIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~  263 (359)
                      |++-|-|+ +-+|.++|..|++.|++|++.+++.+.+++..+.+
T Consensus        10 K~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~~   53 (260)
T d1h5qa_          10 KTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAADAVEVTEKV   53 (260)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCTTHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH
Confidence            34455575 67999999999999999999999998877655433

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=94.13  E-value=0.13  Score=41.30  Aligned_cols=41  Identities=20%  Similarity=0.223  Sum_probs=36.2

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCC-eeEEecCCHHHHHHHHH
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGY-NTIVKDSFEKGLARGLG  261 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~-~V~l~d~~~~~l~~~~~  261 (359)
                      .+|.|+|+|.+|......+...|. +|+..|+++++++.+++
T Consensus        29 ~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~   70 (174)
T d1p0fa2          29 STCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIE   70 (174)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHH
T ss_pred             CEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHHH
Confidence            689999999999999999988886 79999999999877643

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=94.10  E-value=0.016  Score=49.08  Aligned_cols=33  Identities=30%  Similarity=0.363  Sum_probs=30.4

Q ss_pred             EEEEECCCcchHHHHHHHHHCCCeeEEecCCHH
Q psy9056         222 TVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEK  254 (359)
Q Consensus       222 kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~  254 (359)
                      .|.|||+|..|...|..++++|++|+++|.++.
T Consensus         4 DViIIGaG~aGl~aA~~la~~G~~V~liEk~~~   36 (251)
T d2i0za1           4 DVIVIGGGPSGLMAAIGAAEEGANVLLLDKGNK   36 (251)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence            388999999999999999999999999998753

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=93.97  E-value=0.019  Score=49.28  Aligned_cols=35  Identities=23%  Similarity=0.398  Sum_probs=32.2

Q ss_pred             cEEEEECC-CcchHHHHHHHHHCCCeeEEecCCHHH
Q psy9056         221 KTVAVLGA-GLMGAGIAHVTVDKGYNTIVKDSFEKG  255 (359)
Q Consensus       221 ~kI~IIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~  255 (359)
                      +||.|.|+ |.+|+.++..|.++|++|++++|++..
T Consensus         4 kKILVtGatG~iG~~l~~~L~~~G~~V~~l~R~~~~   39 (307)
T d1qyca_           4 SRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTA   39 (307)
T ss_dssp             CCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCCT
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCeEEEEECCCcc
Confidence            78999997 999999999999999999999987654

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=93.94  E-value=0.052  Score=43.04  Aligned_cols=40  Identities=23%  Similarity=0.244  Sum_probs=35.9

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHH
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGL  260 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~  260 (359)
                      .+|.|+|+|.+|...+..+...|.+|++.+.++++++.++
T Consensus        29 ~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~~~r~~~~k   68 (168)
T d1rjwa2          29 EWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAK   68 (168)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHH
T ss_pred             CEEEEeecccchhhhhHHHhcCCCeEeccCCCHHHhhhhh
Confidence            6899999999999999999999999999999999877543

>d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]

Probab=93.92  E-value=0.1  Score=44.50  Aligned_cols=37  Identities=22%  Similarity=0.200  Sum_probs=31.8

Q ss_pred             cEEEEECC-Cc--chHHHHHHHHHCCCeeEEecCCHHHHH
Q psy9056         221 KTVAVLGA-GL--MGAGIAHVTVDKGYNTIVKDSFEKGLA  257 (359)
Q Consensus       221 ~kI~IIG~-G~--mG~~iA~~l~~~G~~V~l~d~~~~~l~  257 (359)
                      |+|-|.|+ |.  +|.++|..|++.|.+|++.+++.+++.
T Consensus         7 K~~lItGaag~~GIG~aiA~~la~~Ga~Vil~~~~~~~~~   46 (268)
T d2h7ma1           7 KRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDRLRLI   46 (268)
T ss_dssp             CEEEECCCSSTTCHHHHHHHHHHHTTCEEEEEECSCHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHcCCEEEEEeCChHHHH
Confidence            67888885 65  999999999999999999999987643

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=93.87  E-value=0.022  Score=44.99  Aligned_cols=37  Identities=16%  Similarity=0.189  Sum_probs=30.9

Q ss_pred             cEEEEE--CCCcchHHHHHHHHHCCCeeEEecCCHHHHH
Q psy9056         221 KTVAVL--GAGLMGAGIAHVTVDKGYNTIVKDSFEKGLA  257 (359)
Q Consensus       221 ~kI~II--G~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~  257 (359)
                      +.+.|+  |.|++|..+|..|++.|.+|+++++.+.-+.
T Consensus        40 ~~vvi~d~ggg~ig~e~A~~la~~G~~Vtlv~~~~~~~~   78 (156)
T d1djqa2          40 KRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVHLANY   78 (156)
T ss_dssp             SEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSCTTTH
T ss_pred             CceEEEecCCChHHHHHHHHHHHcCCeEEEEecCCcccc
Confidence            455565  9999999999999999999999988864433

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=93.85  E-value=0.011  Score=49.64  Aligned_cols=34  Identities=12%  Similarity=0.091  Sum_probs=30.7

Q ss_pred             cEEEEECCCcchHHHHHHHHHCC-------CeeEEecCCHH
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKG-------YNTIVKDSFEK  254 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G-------~~V~l~d~~~~  254 (359)
                      .||+|||+|.-|.+.|..|+++|       ++|++||.++.
T Consensus         3 ~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~~   43 (239)
T d1lqta2           3 YYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPT   43 (239)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSS
T ss_pred             cEEEEECcCHHHHHHHHHHHHcCCccccCCCceEEEecCCC
Confidence            49999999999999999999998       47999998863

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=93.85  E-value=0.12  Score=39.18  Aligned_cols=95  Identities=15%  Similarity=0.086  Sum_probs=56.1

Q ss_pred             EEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc--CCCCC
Q psy9056         222 TVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY--DPFKN  299 (359)
Q Consensus       222 kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~l~~  299 (359)
                      -|-|+|.|.+|..++..|  .|++|.++|.+++..+.....   ...  .-.|..+.            ...+  ..+.+
T Consensus         2 HivI~G~g~~g~~l~~~L--~~~~i~vi~~d~~~~~~~~~~---~~~--~i~Gd~~~------------~~~L~~a~i~~   62 (129)
T d2fy8a1           2 HVVICGWSESTLECLREL--RGSEVFVLAEDENVRKKVLRS---GAN--FVHGDPTR------------VSDLEKANVRG   62 (129)
T ss_dssp             CEEEESCCHHHHHHHHTS--CGGGEEEEESCTTHHHHHHHT---TCE--EEESCTTS------------HHHHHHTTCTT
T ss_pred             EEEEECCCHHHHHHHHHH--cCCCCEEEEcchHHHHHHHhc---Ccc--ccccccCC------------HHHHHHhhhhc
Confidence            478999999999999998  477889999999876654321   000  00011000            0111  24789


Q ss_pred             ccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCC
Q psy9056         300 ADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTS  336 (359)
Q Consensus       300 aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts  336 (359)
                      ++.+|.+.+++..- ..+...+..+.++-.+++-..+
T Consensus        63 A~~vi~~~~~d~~n-~~~~~~~r~~~~~~~iia~~~~   98 (129)
T d2fy8a1          63 ARAVIVNLESDSET-IHCILGIRKIDESVRIIAEAER   98 (129)
T ss_dssp             CSEEEECCSSHHHH-HHHHHHHHHHCSSSCEEEECSS
T ss_pred             CcEEEEeccchhhh-HHHHHHHHHHCCCceEEEEEcC
Confidence            99999999876642 1222334454444345554433

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.83  E-value=0.035  Score=47.46  Aligned_cols=43  Identities=19%  Similarity=0.226  Sum_probs=36.7

Q ss_pred             cEEEEECC-CcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHH
Q psy9056         221 KTVAVLGA-GLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQI  263 (359)
Q Consensus       221 ~kI~IIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~  263 (359)
                      |++-|.|+ +-+|.++|..|++.|++|++.|++++.+++..+.+
T Consensus         8 K~~lITGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~~~   51 (244)
T d1pr9a_           8 RRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQADLDSLVREC   51 (244)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHS
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHhc
Confidence            56777786 88999999999999999999999999888765543

>d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Escherichia coli [TaxId: 562]

Probab=93.82  E-value=0.018  Score=46.51  Aligned_cols=34  Identities=26%  Similarity=0.411  Sum_probs=30.1

Q ss_pred             cEEEEECC-CcchHHHHHHHHHCCCeeEEecCCHH
Q psy9056         221 KTVAVLGA-GLMGAGIAHVTVDKGYNTIVKDSFEK  254 (359)
Q Consensus       221 ~kI~IIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~  254 (359)
                      ++|.|||- ..+|.+++.+|.+.|..|++++....
T Consensus        38 K~v~VIGrS~~VG~Pla~lL~~~gatVt~~h~~t~   72 (166)
T d1b0aa1          38 LNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFTK   72 (166)
T ss_dssp             CEEEEECCCTTTHHHHHHHHHTTTCEEEEECSSCS
T ss_pred             ceEEEEeccccccHHHHHHHHHhhccccccccccc
Confidence            79999997 55999999999999999999986643

>d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Thermus thermophilus [TaxId: 274]

Probab=93.80  E-value=0.24  Score=42.04  Aligned_cols=38  Identities=21%  Similarity=0.218  Sum_probs=31.0

Q ss_pred             cEEEEECCC---cchHHHHHHHHHCCCeeEEecCCHHHHHH
Q psy9056         221 KTVAVLGAG---LMGAGIAHVTVDKGYNTIVKDSFEKGLAR  258 (359)
Q Consensus       221 ~kI~IIG~G---~mG~~iA~~l~~~G~~V~l~d~~~~~l~~  258 (359)
                      |++-|-|++   -+|.++|..|++.|++|++.+++++..+.
T Consensus         9 K~alITGas~~~GIG~aiA~~la~~Ga~V~i~~~~~~~~~~   49 (256)
T d1ulua_           9 KKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAERLRPE   49 (256)
T ss_dssp             CEEEEESCCCSSSHHHHHHHHHHHTTCEEEEEESSGGGHHH
T ss_pred             CEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHH
Confidence            567777864   49999999999999999999998765443

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=93.76  E-value=0.019  Score=50.88  Aligned_cols=34  Identities=24%  Similarity=0.206  Sum_probs=31.3

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCCeeEEecCCHH
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEK  254 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~  254 (359)
                      -.|.|||+|.-|..+|..|.+.|++|+++|.+++
T Consensus         8 ~dV~IIGAG~sGl~~a~~L~~~G~~v~i~Ek~~~   41 (298)
T d1w4xa1           8 VDVLVVGAGFSGLYALYRLRELGRSVHVIETAGD   41 (298)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred             CCEEEECccHHHHHHHHHHHhCCCCEEEEEcCCC
Confidence            3799999999999999999999999999998753

>d2cvoa1 c.2.1.3 (A:68-218,A:384-415) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative semialdehyde dehydrogenase
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=93.74  E-value=0.041  Score=44.99  Aligned_cols=30  Identities=33%  Similarity=0.505  Sum_probs=24.1

Q ss_pred             cEEEEECC-CcchHHHHHHHHHCC-CeeEEec
Q psy9056         221 KTVAVLGA-GLMGAGIAHVTVDKG-YNTIVKD  250 (359)
Q Consensus       221 ~kI~IIG~-G~mG~~iA~~l~~~G-~~V~l~d  250 (359)
                      -||+|||+ |+.|.-+.+.|.++- +++..+.
T Consensus         6 ikVaIlGATGyvG~elirLL~~HP~~ei~~l~   37 (183)
T d2cvoa1           6 VRIAVLGASGYTGAEIVRLLANHPQFRIKVMT   37 (183)
T ss_dssp             EEEEEESCSSHHHHHHHHHHTTCSSEEEEEEE
T ss_pred             cEEEEECcccHHHHHHHHHHHhCCCceEEEEe
Confidence            48999997 999999999998873 3655553

>d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Escherichia coli [TaxId: 562]

Probab=93.68  E-value=0.15  Score=43.32  Aligned_cols=38  Identities=24%  Similarity=0.246  Sum_probs=30.4

Q ss_pred             cEEEEECCCc---chHHHHHHHHHCCCeeEEecCCHHHHHH
Q psy9056         221 KTVAVLGAGL---MGAGIAHVTVDKGYNTIVKDSFEKGLAR  258 (359)
Q Consensus       221 ~kI~IIG~G~---mG~~iA~~l~~~G~~V~l~d~~~~~l~~  258 (359)
                      |+|-|.|++.   +|.++|..|++.|++|++.+++++..+.
T Consensus         6 K~~lITGass~~GIG~aiA~~l~~~G~~V~i~~~~~~~~~~   46 (258)
T d1qsga_           6 KRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKGR   46 (258)
T ss_dssp             CEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSTTTHHH
T ss_pred             CEEEEECCCCchhHHHHHHHHHHHcCCEEEEEeCCHHHHHH
Confidence            5667777643   7799999999999999999999664443

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

Probab=93.57  E-value=0.28  Score=41.49  Aligned_cols=40  Identities=23%  Similarity=0.225  Sum_probs=33.3

Q ss_pred             cEEEEECC-CcchHHHHHHHHHCCCeeEEecCCHHHHHHHH
Q psy9056         221 KTVAVLGA-GLMGAGIAHVTVDKGYNTIVKDSFEKGLARGL  260 (359)
Q Consensus       221 ~kI~IIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~  260 (359)
                      |++-|-|+ +-+|.++|..|++.|++|++.|++++.+++..
T Consensus         6 K~~lITGas~GIG~aia~~l~~~G~~V~~~~r~~~~l~~~~   46 (242)
T d1ulsa_           6 KAVLITGAAHGIGRATLELFAKEGARLVACDIEEGPLREAA   46 (242)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence            45556675 67999999999999999999999998776543

>d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=93.55  E-value=0.058  Score=42.71  Aligned_cols=91  Identities=21%  Similarity=0.164  Sum_probs=53.4

Q ss_pred             EEEEECC-CcchHHHHHHHHHCCC---eeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhccccccc-CcCC
Q psy9056         222 TVAVLGA-GLMGAGIAHVTVDKGY---NTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTL-SYDP  296 (359)
Q Consensus       222 kI~IIG~-G~mG~~iA~~l~~~G~---~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~  296 (359)
                      ||+|||+ |+.|.-+.+.|.++.+   ++..+.-+...        ...+..              ....+.... ....
T Consensus         3 kVaIvGATGyvG~eLirlL~~H~fp~~~l~~~~s~~s~--------G~~~~~--------------~~~~~~~~~~~~~~   60 (154)
T d2gz1a1           3 TVAVVGATGAVGAQMIKMLEESTLPIDKIRYLASARSA--------GKSLKF--------------KDQDITIEETTETA   60 (154)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTCCSCEEEEEEEECGGGT--------TCEEEE--------------TTEEEEEEECCTTT
T ss_pred             EEEEECCCcHHHHHHHHHHHcCCCCceEEEEecccccc--------cccccc--------------cCCcccccccchhh
Confidence            7999998 9999999999988865   34444322110        000000              000111111 1245


Q ss_pred             CCCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCc
Q psy9056         297 FKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIP  339 (359)
Q Consensus       297 l~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~  339 (359)
                      ..++|+++.+.|.....  ......   ...++.|+++++...
T Consensus        61 ~~~~d~~f~~~~~~~s~--~~~~~~---~~~~~~VIDlSsdfR   98 (154)
T d2gz1a1          61 FEGVDIALFSAGSSTSA--KYAPYA---VKAGVVVVDNTSYFR   98 (154)
T ss_dssp             TTTCSEEEECSCHHHHH--HHHHHH---HHTTCEEEECSSTTT
T ss_pred             hhhhhhhhhccCccchh--hHHhhh---ccccceehhcChhhh
Confidence            68899999999855432  333333   346888999888654

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=93.47  E-value=0.015  Score=43.84  Aligned_cols=35  Identities=14%  Similarity=0.064  Sum_probs=29.6

Q ss_pred             cEEEEECCCcchHHHHHHHHHC---CCeeEEecCCHHH
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDK---GYNTIVKDSFEKG  255 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~---G~~V~l~d~~~~~  255 (359)
                      ++|.|||+|.+|.-+|..+...   |.+|+++++.+.-
T Consensus        19 ~~v~IiGgG~ig~E~A~~l~~~~~~g~~Vtli~~~~~i   56 (117)
T d1feca2          19 KRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMI   56 (117)
T ss_dssp             SEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSSS
T ss_pred             CeEEEECCChHHHHHHHHhHhhcccccccceecccccc
Confidence            6899999999999999876654   8899999887643

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=93.45  E-value=0.02  Score=50.71  Aligned_cols=34  Identities=24%  Similarity=0.231  Sum_probs=30.1

Q ss_pred             cEEEEECCCcchHHHHHHHH-----HCCCeeEEecCCHH
Q psy9056         221 KTVAVLGAGLMGAGIAHVTV-----DKGYNTIVKDSFEK  254 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~-----~~G~~V~l~d~~~~  254 (359)
                      --|.|||+|..|.++|..|+     ++|++|+++|+++.
T Consensus         8 yDV~IvGaG~aGl~lA~~La~~~~~~~G~~v~vlEr~~~   46 (360)
T d1pn0a1           8 CDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRST   46 (360)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSS
T ss_pred             CCEEEECcCHHHHHHHHHHHhcccccCCCcEEEEcCCCC
Confidence            35999999999999999996     57999999998754

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.35  E-value=0.1  Score=41.69  Aligned_cols=40  Identities=25%  Similarity=0.312  Sum_probs=34.6

Q ss_pred             cEEEEECC-CcchHHHHHHHHHCCCeeEEecCCHHHHHHHH
Q psy9056         221 KTVAVLGA-GLMGAGIAHVTVDKGYNTIVKDSFEKGLARGL  260 (359)
Q Consensus       221 ~kI~IIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~  260 (359)
                      .+|.|+|+ |.+|......+...|.+|+..+.++++++.++
T Consensus        30 ~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~~~~~~~~   70 (174)
T d1yb5a2          30 ESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVL   70 (174)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH
T ss_pred             CEEEEEeccccccccccccccccCccccccccccccccccc
Confidence            58999996 99999999999889999999999988766543

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=93.33  E-value=0.027  Score=48.15  Aligned_cols=33  Identities=21%  Similarity=0.291  Sum_probs=30.4

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCC-eeEEecCCH
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGY-NTIVKDSFE  253 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~-~V~l~d~~~  253 (359)
                      .+|.|||+|.+|+.++..|++.|. +++++|.+.
T Consensus        31 ~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~   64 (247)
T d1jw9b_          31 SRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDT   64 (247)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred             CCEEEECCCHHHHHHHHHHHHcCCCeEEEECCcc
Confidence            699999999999999999999998 899998664

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=93.27  E-value=0.23  Score=39.76  Aligned_cols=41  Identities=22%  Similarity=0.196  Sum_probs=35.9

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCC-eeEEecCCHHHHHHHHH
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGY-NTIVKDSFEKGLARGLG  261 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~-~V~l~d~~~~~l~~~~~  261 (359)
                      .+|.|+|+|.+|...+..+...|. .|++.|+++++++.+++
T Consensus        30 ~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~   71 (174)
T d1e3ia2          30 STCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKA   71 (174)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH
T ss_pred             CEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHH
Confidence            689999999999999999999997 68889999998776543

>d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Helicobacter pylori [TaxId: 210]

Probab=93.23  E-value=0.23  Score=42.44  Aligned_cols=34  Identities=21%  Similarity=0.244  Sum_probs=29.7

Q ss_pred             cEEEEECC-C--cchHHHHHHHHHCCCeeEEecCCHH
Q psy9056         221 KTVAVLGA-G--LMGAGIAHVTVDKGYNTIVKDSFEK  254 (359)
Q Consensus       221 ~kI~IIG~-G--~mG~~iA~~l~~~G~~V~l~d~~~~  254 (359)
                      |++-|.|+ |  -+|.++|..|++.|++|++.+++++
T Consensus         6 K~alITGaag~~GIG~AiA~~la~~Ga~V~i~~r~~~   42 (274)
T d2pd4a1           6 KKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNES   42 (274)
T ss_dssp             CEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESSTT
T ss_pred             CEEEEECCCCCcHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            56778886 5  4999999999999999999999854

>d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sepiapterin reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.10  E-value=0.065  Score=45.94  Aligned_cols=44  Identities=25%  Similarity=0.209  Sum_probs=37.4

Q ss_pred             cEEEEE-CC-CcchHHHHHHHHH---CCCeeEEecCCHHHHHHHHHHHH
Q psy9056         221 KTVAVL-GA-GLMGAGIAHVTVD---KGYNTIVKDSFEKGLARGLGQIK  264 (359)
Q Consensus       221 ~kI~II-G~-G~mG~~iA~~l~~---~G~~V~l~d~~~~~l~~~~~~~~  264 (359)
                      .||+|| |+ +-+|.++|..|++   .|++|++.+++++++++..+.++
T Consensus         6 gKvalITGas~GIG~aiA~~lA~~~~~G~~Vv~~~r~~~~l~~~~~~l~   54 (259)
T d1oaaa_           6 CAVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSESMLRQLKEELG   54 (259)
T ss_dssp             SEEEEESSCSSHHHHHHHHHHHTTBCTTCEEEEEESCHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHhcccCCCEEEEEECCHHHHHHHHHHHH
Confidence            578888 65 6799999999986   69999999999999988777654

>d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein At5g02240 (T7H20 290)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=93.05  E-value=0.067  Score=43.92  Aligned_cols=39  Identities=21%  Similarity=0.152  Sum_probs=32.1

Q ss_pred             CccEEEEECC-CcchHHHHHHHHHCCCeeEE--ecCCHHHHH
Q psy9056         219 PVKTVAVLGA-GLMGAGIAHVTVDKGYNTIV--KDSFEKGLA  257 (359)
Q Consensus       219 ~~~kI~IIG~-G~mG~~iA~~l~~~G~~V~l--~d~~~~~l~  257 (359)
                      .|++|.|.|+ |.+|+.++..|++.|++|.+  ..|++++.+
T Consensus         2 ~~~tVlVtGatG~iG~~l~~~Ll~~g~~v~v~~~~R~~~~~~   43 (252)
T d2q46a1           2 NLPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKE   43 (252)
T ss_dssp             SCCEEEEESTTSTTHHHHHHHHHHTTTTCEEEEEESCHHHHH
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHCCCcEEEEEEcCCHHHHH
Confidence            5899999995 99999999999999987554  567776543

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=92.99  E-value=0.038  Score=47.72  Aligned_cols=34  Identities=26%  Similarity=0.362  Sum_probs=31.0

Q ss_pred             cEEEEECC-CcchHHHHHHHHHCCCeeEEecCCHH
Q psy9056         221 KTVAVLGA-GLMGAGIAHVTVDKGYNTIVKDSFEK  254 (359)
Q Consensus       221 ~kI~IIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~  254 (359)
                      +||.|.|+ |.+|+.++..|.++||+|++++|++.
T Consensus         4 ~KILVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~   38 (312)
T d1qyda_           4 SRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEV   38 (312)
T ss_dssp             CCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCc
Confidence            67999996 99999999999999999999998754

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=92.92  E-value=0.42  Score=40.84  Aligned_cols=40  Identities=23%  Similarity=0.209  Sum_probs=31.3

Q ss_pred             cEEEEECC-CcchHHHHHHHHHCCCeeEEecCCH-HHHHHHH
Q psy9056         221 KTVAVLGA-GLMGAGIAHVTVDKGYNTIVKDSFE-KGLARGL  260 (359)
Q Consensus       221 ~kI~IIG~-G~mG~~iA~~l~~~G~~V~l~d~~~-~~l~~~~  260 (359)
                      |++-|-|+ +-+|.++|..|++.|++|++.+++. +.+++..
T Consensus        19 K~~lITGas~GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~   60 (272)
T d1g0oa_          19 KVALVTGAGRGIGREMAMELGRRGCKVIVNYANSTESAEEVV   60 (272)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCchHHHHHHH
Confidence            55666674 8999999999999999999998774 4444433

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=92.87  E-value=0.03  Score=47.74  Aligned_cols=34  Identities=26%  Similarity=0.224  Sum_probs=31.5

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCCeeEEecCCHH
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEK  254 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~  254 (359)
                      ..|.|||+|.-|...|..++++|++|.++|.++.
T Consensus         5 ~DViIIGaG~aGl~aA~~la~~G~~V~vlEk~~~   38 (253)
T d2gqfa1           5 SENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKK   38 (253)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred             CcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence            3589999999999999999999999999999864

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=92.80  E-value=0.019  Score=43.33  Aligned_cols=36  Identities=17%  Similarity=0.108  Sum_probs=29.6

Q ss_pred             cEEEEECCCcchHHHHHHHHHC---CCeeEEecCCHHHH
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDK---GYNTIVKDSFEKGL  256 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~---G~~V~l~d~~~~~l  256 (359)
                      ++|.|||+|.+|.-+|..+.+.   |.+|+++++.+.-+
T Consensus        21 ~~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~~~~iL   59 (117)
T d1aoga2          21 RRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGEMIL   59 (117)
T ss_dssp             SEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSSS
T ss_pred             CeEEEECCcHHHHHHHHHhhhcccCCcEEEEEeccchhh
Confidence            6999999999999999776654   56899998876543

>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Negative transcriptional regulator NmrA
species: Aspergillus nidulans [TaxId: 162425]

Probab=92.77  E-value=0.028  Score=50.23  Aligned_cols=35  Identities=37%  Similarity=0.466  Sum_probs=32.3

Q ss_pred             cEEEEECC-CcchHHHHHHHHHCCCeeEEecCCHHH
Q psy9056         221 KTVAVLGA-GLMGAGIAHVTVDKGYNTIVKDSFEKG  255 (359)
Q Consensus       221 ~kI~IIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~  255 (359)
                      |+|.|+|+ |.+|+.++..|.+.||+|+++.|+++.
T Consensus         4 ktIlVtGatG~iG~~lv~~Ll~~G~~V~~l~R~~~~   39 (350)
T d1xgka_           4 KTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKG   39 (350)
T ss_dssp             CCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCSCS
T ss_pred             CEEEEECCChHHHHHHHHHHHhCCCeEEEEECCcch
Confidence            78999996 999999999999999999999888764

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.66  E-value=0.083  Score=44.96  Aligned_cols=42  Identities=14%  Similarity=0.096  Sum_probs=35.4

Q ss_pred             cEEEEECC-CcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHH
Q psy9056         221 KTVAVLGA-GLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQ  262 (359)
Q Consensus       221 ~kI~IIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~  262 (359)
                      |++-|.|+ +-+|.++|..|++.|++|++.+++++.+++..+.
T Consensus         6 K~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~   48 (242)
T d1cyda_           6 LRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNSDLVSLAKE   48 (242)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHh
Confidence            45666686 7799999999999999999999999888776543

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=92.36  E-value=0.037  Score=43.69  Aligned_cols=32  Identities=25%  Similarity=0.329  Sum_probs=27.9

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCCeeEEecCCH
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFE  253 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~  253 (359)
                      .||.|||+|..|..+|..+. .+.+|+++++.+
T Consensus         1 ~rVvIIGgG~~G~e~A~~l~-~~~~Vtvv~~~~   32 (167)
T d1xhca1           1 SKVVIVGNGPGGFELAKQLS-QTYEVTVIDKEP   32 (167)
T ss_dssp             CEEEEECCSHHHHHHHHHHT-TTSEEEEECSSS
T ss_pred             CeEEEECCcHHHHHHHHHHH-cCCCEEEEeccc
Confidence            48999999999999999885 478999998754

>d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dehydrogenase/reductase SDR family member 6, DHRS6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.30  E-value=0.052  Score=46.37  Aligned_cols=38  Identities=26%  Similarity=0.238  Sum_probs=32.4

Q ss_pred             EEEEE-C-CCcchHHHHHHHHHCCCeeEEecCCHHHHHHH
Q psy9056         222 TVAVL-G-AGLMGAGIAHVTVDKGYNTIVKDSFEKGLARG  259 (359)
Q Consensus       222 kI~II-G-~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~  259 (359)
                      |+++| | ++.+|.++|..|++.|++|++.|++++++++.
T Consensus         7 K~alITGas~GIG~aia~~la~~G~~Vi~~~r~~~~l~~~   46 (245)
T d2ag5a1           7 KVIILTAAAQGIGQAAALAFAREGAKVIATDINESKLQEL   46 (245)
T ss_dssp             CEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHGGG
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHH
Confidence            45555 5 59999999999999999999999999887654

>d1mv8a3 c.26.3.1 (A:301-436) GDP-mannose 6-dehydrogenase, GDP-binding domain {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
family: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
domain: GDP-mannose 6-dehydrogenase, GDP-binding domain
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=92.28  E-value=0.15  Score=39.18  Aligned_cols=96  Identities=13%  Similarity=0.122  Sum_probs=58.4

Q ss_pred             cEEEEECC----------CcchHHHHHHHHHCCCeeEEecCCHHHHHHH---HHHHHHhHHHHHhhccCChHHHHhhhcc
Q psy9056         221 KTVAVLGA----------GLMGAGIAHVTVDKGYNTIVKDSFEKGLARG---LGQIKTGLDGAVKRKKMSALDRDRYLAS  287 (359)
Q Consensus       221 ~kI~IIG~----------G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~---~~~~~~~l~~~~~~~~~~~~~~~~~~~~  287 (359)
                      +||+|+|.          ++-...++..|...|.+|.+||+.-+..+..   ...+....    .           . .+
T Consensus        14 kkI~ilGlafK~~t~D~R~Sps~~li~~L~~~g~~V~~~DP~v~~~~~~~~~~~~~~~~~----~-----------~-~~   77 (136)
T d1mv8a3          14 RKVGLLGLSFKAGTDDLRESPLVELAEMLIGKGYELRIFDRNVEYARVHGANKEYIESKI----P-----------H-VS   77 (136)
T ss_dssp             CEEEEECCSSSTTCCCCTTCHHHHHHHHHHHTTCEEEEECHHHHHHTTSSSCHHHHHHTS----H-----------H-HH
T ss_pred             CEEEEEEEEECCCCcchhcCHHHHHHHHHhhhhccccccCCCCCHHHHhhhhhhhhhhcc----c-----------c-cc
Confidence            68999996          3456778889999999999999653321100   00000000    0           0 01


Q ss_pred             cccccCc-CCCCCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCC
Q psy9056         288 LVGTLSY-DPFKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAI  338 (359)
Q Consensus       288 i~~~~~~-~~l~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~  338 (359)
                      ....++. +++.++|+||++++.+.      |+.+.....++.+|++...-+
T Consensus        78 ~~~~~~~~e~i~~~D~ivi~t~h~~------f~~l~~~~~~~~~I~D~~~~~  123 (136)
T d1mv8a3          78 SLLVSDLDEVVASSDVLVLGNGDEL------FVDLVNKTPSGKKLVDLVGFM  123 (136)
T ss_dssp             TTBCSCHHHHHHHCSEEEECSCCGG------GHHHHHSCCTTCEEEESSSCC
T ss_pred             ceeehhhhhhhhhceEEEEEeCCHH------HHHHHHHhcCCCEEEECCCCC
Confidence            2233444 56899999999997654      334445566778887765443

>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: DTDP-4-dehydrorhamnose reductase RfbD
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=92.14  E-value=0.033  Score=47.62  Aligned_cols=32  Identities=25%  Similarity=0.369  Sum_probs=29.7

Q ss_pred             EEEEECC-CcchHHHHHHHHHCCCeeEEecCCH
Q psy9056         222 TVAVLGA-GLMGAGIAHVTVDKGYNTIVKDSFE  253 (359)
Q Consensus       222 kI~IIG~-G~mG~~iA~~l~~~G~~V~l~d~~~  253 (359)
                      ||-|.|+ |.+|+.++..|.++||+|+..|+++
T Consensus         3 KIlItGasGfiG~~l~~~L~~~g~~Vi~~~r~~   35 (281)
T d1vl0a_           3 KILITGANGQLGREIQKQLKGKNVEVIPTDVQD   35 (281)
T ss_dssp             EEEEESTTSHHHHHHHHHHTTSSEEEEEECTTT
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCCEEEEeechh
Confidence            5999997 9999999999999999999999864

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=92.02  E-value=0.052  Score=44.19  Aligned_cols=33  Identities=9%  Similarity=0.216  Sum_probs=30.2

Q ss_pred             ccEEEEECCCcchHHHHHHHHHCCCeeEEecCC
Q psy9056         220 VKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSF  252 (359)
Q Consensus       220 ~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~  252 (359)
                      -++|.|||+|.-|..-|..+++.|.+|+++|..
T Consensus         5 ~~~VvIIGgGpaGl~aA~~~ar~g~~v~vie~~   37 (192)
T d1vdca1           5 NTRLCIVGSGPAAHTAAIYAARAELKPLLFEGW   37 (192)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCCEEECCS
T ss_pred             cceEEEECCCHHHHHHHHHHHHcCCcEEEEEee
Confidence            478999999999999999999999999999843

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=92.00  E-value=0.047  Score=44.25  Aligned_cols=33  Identities=15%  Similarity=0.254  Sum_probs=30.4

Q ss_pred             ccEEEEECCCcchHHHHHHHHHCCCeeEEecCC
Q psy9056         220 VKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSF  252 (359)
Q Consensus       220 ~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~  252 (359)
                      -++|.|||.|..|..-|..+++.|.+|+++++.
T Consensus         5 ~~dVvIIGGGpaGl~AA~~~ar~g~~v~iie~~   37 (190)
T d1trba1           5 HSKLLILGSGPAGYTAAVYAARANLQPVLITGM   37 (190)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTTTCCCEEECCS
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEEee
Confidence            468999999999999999999999999999864

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=91.98  E-value=0.04  Score=44.07  Aligned_cols=34  Identities=21%  Similarity=0.343  Sum_probs=29.5

Q ss_pred             ccEEEEECCCcchHHHHHHHHHCCCeeEEecCCH
Q psy9056         220 VKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFE  253 (359)
Q Consensus       220 ~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~  253 (359)
                      -++|.|||+|..|.-+|..+.+.|.+|.++.+.+
T Consensus         3 ~~~VvIIGgG~~G~e~A~~l~~~g~~v~v~~~~~   36 (185)
T d1q1ra1           3 NDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGD   36 (185)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECS
T ss_pred             CCCEEEECCcHHHHHHHHHHHHcCCceEEEEecC
Confidence            3689999999999999999999999887765554

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=91.87  E-value=0.54  Score=39.82  Aligned_cols=43  Identities=26%  Similarity=0.276  Sum_probs=32.5

Q ss_pred             cEEEEECC-CcchHHHHHHHHHCCCeeEE-ecCCHHHHHHHHHHH
Q psy9056         221 KTVAVLGA-GLMGAGIAHVTVDKGYNTIV-KDSFEKGLARGLGQI  263 (359)
Q Consensus       221 ~kI~IIG~-G~mG~~iA~~l~~~G~~V~l-~d~~~~~l~~~~~~~  263 (359)
                      |.+-|.|+ +-+|..+|..|++.|++|++ ++++++.++...+.+
T Consensus         7 K~alITGas~GIG~aia~~la~~G~~Vvi~~~~~~~~~~~~~~~~   51 (259)
T d1ja9a_           7 KVALTTGAGRGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAEL   51 (259)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEcCCChHHHHHHHHHH
Confidence            44556665 77999999999999999988 567777666655433

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

Probab=91.80  E-value=0.28  Score=41.79  Aligned_cols=40  Identities=23%  Similarity=0.323  Sum_probs=31.4

Q ss_pred             EEEEE-CC-CcchHHHHHHHHHCCCeeEEecCC-HHHHHHHHH
Q psy9056         222 TVAVL-GA-GLMGAGIAHVTVDKGYNTIVKDSF-EKGLARGLG  261 (359)
Q Consensus       222 kI~II-G~-G~mG~~iA~~l~~~G~~V~l~d~~-~~~l~~~~~  261 (359)
                      |+++| |+ +-+|.++|..|++.|++|++.+++ .+.+++..+
T Consensus         5 K~alITGas~GIG~aiA~~la~~Ga~V~~~~r~~~~~~~~~~~   47 (260)
T d1x1ta1           5 KVAVVTGSTSGIGLGIATALAAQGADIVLNGFGDAAEIEKVRA   47 (260)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTCEEEEECCSCHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHH
Confidence            55555 54 779999999999999999999997 455555444

>d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.71  E-value=0.078  Score=44.99  Aligned_cols=42  Identities=17%  Similarity=0.230  Sum_probs=34.9

Q ss_pred             EEEEECC-CcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHH
Q psy9056         222 TVAVLGA-GLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQI  263 (359)
Q Consensus       222 kI~IIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~  263 (359)
                      .+-|-|+ +-+|.++|..|++.|++|++.|++++.++...+.+
T Consensus         7 valITGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l   49 (248)
T d2o23a1           7 VAVITGGASGLGLATAERLVGQGASAVLLDLPNSGGEAQAKKL   49 (248)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSSHHHHHHHH
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHh
Confidence            3445565 77999999999999999999999998888766554

>d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=91.52  E-value=0.11  Score=43.87  Aligned_cols=38  Identities=32%  Similarity=0.330  Sum_probs=33.3

Q ss_pred             cEEEEECC-CcchHHHHHHHHHCCCeeEEecCCHHHHHH
Q psy9056         221 KTVAVLGA-GLMGAGIAHVTVDKGYNTIVKDSFEKGLAR  258 (359)
Q Consensus       221 ~kI~IIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~  258 (359)
                      |++-|-|+ +-+|.++|..|++.|++|++.|++++.+++
T Consensus         5 K~~lVTGas~GIG~aia~~l~~~Ga~V~~~~r~~~~l~~   43 (234)
T d1o5ia_           5 KGVLVLAASRGIGRAVADVLSQEGAEVTICARNEELLKR   43 (234)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHH
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHh
Confidence            56778886 779999999999999999999999887654

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=91.51  E-value=0.056  Score=44.08  Aligned_cols=33  Identities=15%  Similarity=0.041  Sum_probs=28.7

Q ss_pred             cEEEEECCCcchHHHHHHHHHCC--CeeEEecCCH
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKG--YNTIVKDSFE  253 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G--~~V~l~d~~~  253 (359)
                      +||.|||+|..|..+|..+.+.+  .+|+++++++
T Consensus         1 ~KVvIIGgG~~G~e~A~~l~~~~~~~~V~v~~~~~   35 (198)
T d1nhpa1           1 MKVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGD   35 (198)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSS
T ss_pred             CEEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCC
Confidence            48999999999999999998874  5899998764

>d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=91.25  E-value=0.73  Score=38.73  Aligned_cols=41  Identities=27%  Similarity=0.269  Sum_probs=31.0

Q ss_pred             EEEE-C-CCcchHHHHHHHHHCCCeeEEe-cCCHHHHHHHHHHH
Q psy9056         223 VAVL-G-AGLMGAGIAHVTVDKGYNTIVK-DSFEKGLARGLGQI  263 (359)
Q Consensus       223 I~II-G-~G~mG~~iA~~l~~~G~~V~l~-d~~~~~l~~~~~~~  263 (359)
                      |.+| | ++-+|.++|..|++.|++|++. .++++.++...+.+
T Consensus         3 V~lITGas~GIG~a~a~~la~~Ga~V~i~~~~~~~~~~~~~~~~   46 (244)
T d1edoa_           3 VVVVTGASRGIGKAIALSLGKAGCKVLVNYARSAKAAEEVSKQI   46 (244)
T ss_dssp             EEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHH
T ss_pred             EEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHH
Confidence            4444 5 4889999999999999999885 56777666655433

>d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase
species: Bacillus megaterium [TaxId: 1404]

Probab=91.18  E-value=0.7  Score=39.30  Aligned_cols=40  Identities=18%  Similarity=0.165  Sum_probs=30.5

Q ss_pred             cEEEEEC-CCcchHHHHHHHHHCCCeeEEecCCHH-HHHHHH
Q psy9056         221 KTVAVLG-AGLMGAGIAHVTVDKGYNTIVKDSFEK-GLARGL  260 (359)
Q Consensus       221 ~kI~IIG-~G~mG~~iA~~l~~~G~~V~l~d~~~~-~l~~~~  260 (359)
                      |.+-|.| ++-+|.++|..|++.|++|++.+++.+ .++...
T Consensus         8 K~alITGas~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~   49 (261)
T d1geea_           8 KVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEANSVL   49 (261)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHH
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHH
Confidence            3444556 488999999999999999999999854 444433

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.10  E-value=0.11  Score=40.68  Aligned_cols=31  Identities=16%  Similarity=0.265  Sum_probs=29.3

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCCeeEEecC
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDS  251 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~  251 (359)
                      ++|.|||+|.+|..-+..+.++|-+|+++..
T Consensus        14 krvLViGgG~va~~ka~~Ll~~GA~VtVvap   44 (150)
T d1kyqa1          14 KRILLIGGGEVGLTRLYKLMPTGCKLTLVSP   44 (150)
T ss_dssp             CEEEEEEESHHHHHHHHHHGGGTCEEEEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEeC
Confidence            7999999999999999999999999999954

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

Probab=91.09  E-value=0.081  Score=46.87  Aligned_cols=35  Identities=20%  Similarity=0.092  Sum_probs=32.3

Q ss_pred             cEEEEECC-CcchHHHHHHHHHCCCeeEEecCCHHH
Q psy9056         221 KTVAVLGA-GLMGAGIAHVTVDKGYNTIVKDSFEKG  255 (359)
Q Consensus       221 ~kI~IIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~  255 (359)
                      |||-|.|+ |.+|+.++..|.++|++|+++|++...
T Consensus         9 KkILVTG~tGfIGs~lv~~Ll~~g~~V~~~~r~~~~   44 (356)
T d1rkxa_           9 KRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAPT   44 (356)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCSS
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCc
Confidence            79999995 999999999999999999999998654

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=91.04  E-value=0.27  Score=38.87  Aligned_cols=40  Identities=25%  Similarity=0.220  Sum_probs=33.4

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCC-eeEEecCCHHHHHHHH
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGY-NTIVKDSFEKGLARGL  260 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~-~V~l~d~~~~~l~~~~  260 (359)
                      .+|.|+|+|-+|...+..+...|. .|+..|.++++++.++
T Consensus        30 ~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak   70 (176)
T d2fzwa2          30 SVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAK   70 (176)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHH
T ss_pred             CEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHHHHHH
Confidence            589999999999888888888885 6888899998876544

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=90.98  E-value=0.17  Score=41.52  Aligned_cols=41  Identities=34%  Similarity=0.255  Sum_probs=34.4

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCC-eeEEecCCHHHHHHHHH
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGY-NTIVKDSFEKGLARGLG  261 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~-~V~l~d~~~~~l~~~~~  261 (359)
                      .+|.|+|+|.+|...+..+...|. .|++.|.++++++.+.+
T Consensus        27 ~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~   68 (195)
T d1kola2          27 STVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKA   68 (195)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHH
T ss_pred             CEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhh
Confidence            589999999999888887777776 79999999999886643

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=90.92  E-value=0.11  Score=41.62  Aligned_cols=41  Identities=17%  Similarity=0.115  Sum_probs=35.1

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHH
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQI  263 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~  263 (359)
                      .+|-.+|+|. | ..+..|+++|++|+.+|.+++.++.+.+..
T Consensus        22 ~rvLd~GCG~-G-~~a~~la~~G~~V~gvD~S~~~i~~a~~~~   62 (201)
T d1pjza_          22 ARVLVPLCGK-S-QDMSWLSGQGYHVVGAELSEAAVERYFTER   62 (201)
T ss_dssp             CEEEETTTCC-S-HHHHHHHHHCCEEEEEEECHHHHHHHHHHH
T ss_pred             CEEEEecCcC-C-HHHHHHHHcCCceEeecccHHHHHHHHHHh
Confidence            6999999998 4 367788899999999999999988876543

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=90.83  E-value=0.076  Score=46.24  Aligned_cols=32  Identities=28%  Similarity=0.352  Sum_probs=29.8

Q ss_pred             EEEEECCCcchHHHHHHHHHCCCeeEEecCCH
Q psy9056         222 TVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFE  253 (359)
Q Consensus       222 kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~  253 (359)
                      -|.|||+|.-|.+.|..++++|++|++++..+
T Consensus        18 DVlVIG~G~aGl~aA~~la~~G~~V~lvEK~~   49 (308)
T d1y0pa2          18 DVVVVGSGGAGFSAAISATDSGAKVILIEKEP   49 (308)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEecCC
Confidence            58999999999999999999999999999754

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

Probab=90.80  E-value=0.066  Score=46.21  Aligned_cols=33  Identities=21%  Similarity=0.220  Sum_probs=30.0

Q ss_pred             cEEEEECCCcchHHHHHHHHH-CCCeeEEecCCH
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVD-KGYNTIVKDSFE  253 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~-~G~~V~l~d~~~  253 (359)
                      ..|.|||+|.-|...|..+++ .|++|.++|.++
T Consensus        34 ~DViVIGaGpaGL~aA~~LA~~~G~~V~vlE~~~   67 (278)
T d1rp0a1          34 TDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSV   67 (278)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSS
T ss_pred             CCEEEECCCHHHHHHHHHHHHccCCeEEEEecCC
Confidence            359999999999999999987 599999999876

>d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Escherichia coli [TaxId: 562]

Probab=90.74  E-value=0.088  Score=46.62  Aligned_cols=31  Identities=26%  Similarity=0.442  Sum_probs=28.6

Q ss_pred             cEEEEECC-CcchHHHHHHHHHCCCeeEEecC
Q psy9056         221 KTVAVLGA-GLMGAGIAHVTVDKGYNTIVKDS  251 (359)
Q Consensus       221 ~kI~IIG~-G~mG~~iA~~l~~~G~~V~l~d~  251 (359)
                      +||-|+|+ |.+|+.++..|++.|++|+++|+
T Consensus         1 MKiLItG~tGfIG~~l~~~L~~~g~~V~~~d~   32 (338)
T d1udca_           1 MRVLVTGGSGYIGSHTCVQLLQNGHDVIILDN   32 (338)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcCEEEEEEC
Confidence            36999996 99999999999999999999986

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=90.71  E-value=0.72  Score=36.25  Aligned_cols=40  Identities=23%  Similarity=0.243  Sum_probs=34.7

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCC-eeEEecCCHHHHHHHH
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGY-NTIVKDSFEKGLARGL  260 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~-~V~l~d~~~~~l~~~~  260 (359)
                      .+|.|+|+|.+|...+..+...|- .|+..|+++++++.++
T Consensus        30 ~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~   70 (175)
T d1cdoa2          30 STCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAK   70 (175)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHH
T ss_pred             CEEEEEecCCccchHHHHHHHHhhchheeecchHHHHHHHH
Confidence            689999999999999988888876 7999999999877654

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=90.59  E-value=0.77  Score=36.88  Aligned_cols=91  Identities=16%  Similarity=0.178  Sum_probs=57.7

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhccccc-ccCcCC--C
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVG-TLSYDP--F  297 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~--l  297 (359)
                      .+|-=||+|. |. .+..+++.|++|+.+|.+++.++.+......       .+          ++++.+ ..|...  .
T Consensus        32 grvLDiGcG~-G~-~~~~la~~g~~v~gvD~s~~~l~~a~~~~~~-------~~----------~~~~~~~~~d~~~~~~   92 (198)
T d2i6ga1          32 GRTLDLGCGN-GR-NSLYLAANGYDVTAWDKNPASMANLERIKAA-------EG----------LDNLQTDLVDLNTLTF   92 (198)
T ss_dssp             CEEEEETCTT-SH-HHHHHHHTTCEEEEEESCHHHHHHHHHHHHH-------TT----------CTTEEEEECCTTTCCC
T ss_pred             CcEEEECCCC-CH-HHHHHHHHhhhhccccCcHHHHHHHHHHhhh-------cc----------ccchhhhheecccccc
Confidence            5799999994 53 6678889999999999999998877654321       01          112222 122211  1


Q ss_pred             -CCccEEEEcc-----cCCHHHHHHHHHHHHHhCCCCcEEE
Q psy9056         298 -KNADMVIEAV-----FEDINIKHQVIKEIEAVVPPHCVVA  332 (359)
Q Consensus       298 -~~aD~Vi~av-----p~~~~~k~~v~~~l~~~~~~~~ii~  332 (359)
                       ..-|+|+...     |.+.  ...+++++.+.++++.+++
T Consensus        93 ~~~fD~I~~~~~~~~~~~~~--~~~~l~~~~~~L~pgG~~~  131 (198)
T d2i6ga1          93 DGEYDFILSTVVMMFLEAQT--IPGLIANMQRCTKPGGYNL  131 (198)
T ss_dssp             CCCEEEEEEESCGGGSCTTH--HHHHHHHHHHTEEEEEEEE
T ss_pred             cccccEEEEeeeeecCCHHH--HHHHHHHHHHHcCCCcEEE
Confidence             3347777422     3332  5578888888888887543

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=90.45  E-value=0.087  Score=43.33  Aligned_cols=31  Identities=13%  Similarity=0.133  Sum_probs=29.1

Q ss_pred             EEEEECCCcchHHHHHHHHHCCCeeEEecCC
Q psy9056         222 TVAVLGAGLMGAGIAHVTVDKGYNTIVKDSF  252 (359)
Q Consensus       222 kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~  252 (359)
                      -|.|||+|.-|...|..+++.|.+|.+++.+
T Consensus         4 DvvVIG~G~aG~~aA~~a~~~G~kV~iiE~~   34 (217)
T d1gesa1           4 DYIAIGGGSGGIASINRAAMYGQKCALIEAK   34 (217)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTCCEEEEESS
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCEEEEEecc
Confidence            3799999999999999999999999999976

>d1lc0a1 c.2.1.3 (A:2-128,A:247-291) Biliverdin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Biliverdin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=90.40  E-value=0.063  Score=43.06  Aligned_cols=22  Identities=27%  Similarity=0.218  Sum_probs=18.3

Q ss_pred             cEEEEECCCcchHHHHHHHHHC
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDK  242 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~  242 (359)
                      -+|+|||+|.||...+..+.+.
T Consensus         8 ~kv~iIG~G~~g~~h~~~l~~~   29 (172)
T d1lc0a1           8 FGVVVVGVGRAGSVRLRDLKDP   29 (172)
T ss_dssp             EEEEEECCSHHHHHHHHHHTSH
T ss_pred             cEEEEEcCCHHHHHHHHHHHhC
Confidence            4899999999999887776553

>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose-3', 5'-epimerase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=90.37  E-value=0.1  Score=46.52  Aligned_cols=33  Identities=24%  Similarity=0.349  Sum_probs=29.7

Q ss_pred             cEEEEECC-CcchHHHHHHHHHCCCeeEEecCCH
Q psy9056         221 KTVAVLGA-GLMGAGIAHVTVDKGYNTIVKDSFE  253 (359)
Q Consensus       221 ~kI~IIG~-G~mG~~iA~~l~~~G~~V~l~d~~~  253 (359)
                      +||.|.|+ |.+|+.++..|.+.||+|+++|+..
T Consensus        16 MKILVTGgsGfIGs~lv~~L~~~g~~V~~~d~~~   49 (363)
T d2c5aa1          16 LKISITGAGGFIASHIARRLKHEGHYVIASDWKK   49 (363)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCC
Confidence            46999985 9999999999999999999998654

>d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-glucuronate decarboxylase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.27  E-value=0.1  Score=45.70  Aligned_cols=32  Identities=25%  Similarity=0.513  Sum_probs=29.5

Q ss_pred             cEEEEECC-CcchHHHHHHHHHCCCeeEEecCC
Q psy9056         221 KTVAVLGA-GLMGAGIAHVTVDKGYNTIVKDSF  252 (359)
Q Consensus       221 ~kI~IIG~-G~mG~~iA~~l~~~G~~V~l~d~~  252 (359)
                      |||-|.|+ |.+|+.++..|.+.|++|+.+|+.
T Consensus         2 KKIlVtG~sGfiG~~lv~~L~~~g~~V~~~d~~   34 (312)
T d2b69a1           2 KRILITGGAGFVGSHLTDKLMMDGHEVTVVDNF   34 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCC
Confidence            68999996 999999999999999999999863

>d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein TTHA0369
species: Thermus thermophilus [TaxId: 274]

Probab=90.11  E-value=0.46  Score=40.19  Aligned_cols=37  Identities=30%  Similarity=0.269  Sum_probs=30.8

Q ss_pred             cEEEEEC-CCcchHHHHHHHHHCCCeeEEecCCHHHHH
Q psy9056         221 KTVAVLG-AGLMGAGIAHVTVDKGYNTIVKDSFEKGLA  257 (359)
Q Consensus       221 ~kI~IIG-~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~  257 (359)
                      |.+-|-| ++-+|.++|..|++.|++|++.|++++..+
T Consensus         6 K~alITGas~GIG~aia~~la~~G~~V~~~~~~~~~~~   43 (248)
T d2d1ya1           6 KGVLVTGGARGIGRAIAQAFAREGALVALCDLRPEGKE   43 (248)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTTHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHH
Confidence            4455557 488999999999999999999999987543

>d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Drosophila alcohol dehydrogenase
species: Fly (Drosophila lebanonensis) [TaxId: 7225]

Probab=90.06  E-value=0.54  Score=39.86  Aligned_cols=37  Identities=19%  Similarity=0.192  Sum_probs=29.6

Q ss_pred             cEEEEECC-CcchHHHHHHHHHCCCeeEEecCCHHHHH
Q psy9056         221 KTVAVLGA-GLMGAGIAHVTVDKGYNTIVKDSFEKGLA  257 (359)
Q Consensus       221 ~kI~IIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~l~  257 (359)
                      |.|-|-|+ +-+|..+|..|++.|.+|++.+++.+..+
T Consensus         6 K~vlITGgs~GIG~~~A~~la~~G~~vii~~r~~~~~~   43 (254)
T d1sbya1           6 KNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVENPT   43 (254)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESSCCHH
T ss_pred             CEEEEecCCCHHHHHHHHHHHHCCCEEEEEECCcccHH
Confidence            56677776 67999999999999999888876665543

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.92  E-value=0.091  Score=43.42  Aligned_cols=31  Identities=26%  Similarity=0.353  Sum_probs=29.3

Q ss_pred             EEEECCCcchHHHHHHHHHCCCeeEEecCCH
Q psy9056         223 VAVLGAGLMGAGIAHVTVDKGYNTIVKDSFE  253 (359)
Q Consensus       223 I~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~  253 (359)
                      |.|||+|.-|...|..+++.|++|.++|..+
T Consensus         8 viVIG~GpAGl~aA~~aa~~G~kV~lie~~~   38 (233)
T d1v59a1           8 VVIIGGGPAGYVAAIKAAQLGFNTACVEKRG   38 (233)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             EEEECCCHHHHHHHHHHHHCCCcEEEEEecC
Confidence            8999999999999999999999999999764

>d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=89.90  E-value=0.3  Score=40.94  Aligned_cols=34  Identities=21%  Similarity=0.333  Sum_probs=30.5

Q ss_pred             cEEEEECC-CcchHHHHHHHHHCCCeeEEecCCHH
Q psy9056         221 KTVAVLGA-GLMGAGIAHVTVDKGYNTIVKDSFEK  254 (359)
Q Consensus       221 ~kI~IIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~  254 (359)
                      |+|-|.|+ |-+|.++|..|++.|++|.+.|+++.
T Consensus         3 K~vlITGas~GIG~a~a~~l~~~G~~V~~~~~~~~   37 (236)
T d1dhra_           3 RRVLVYGGRGALGSRCVQAFRARNWWVASIDVVEN   37 (236)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSCC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCcc
Confidence            68889997 78999999999999999999998754

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=89.90  E-value=0.11  Score=41.29  Aligned_cols=31  Identities=29%  Similarity=0.350  Sum_probs=28.7

Q ss_pred             EEEEECCCcchHHHHHHHHHCCCeeEEecCC
Q psy9056         222 TVAVLGAGLMGAGIAHVTVDKGYNTIVKDSF  252 (359)
Q Consensus       222 kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~  252 (359)
                      .|.|||+|..|...|..+++.|.+|.+++.+
T Consensus         3 DViIIGgGpaGl~AAi~aar~G~~v~iie~~   33 (184)
T d1fl2a1           3 DVLIVGSGPAGAAAAIYSARKGIRTGLMGER   33 (184)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTCCEEEECSS
T ss_pred             cEEEECcCHHHHHHHHHHHHcCCeEEEEEEe
Confidence            4789999999999999999999999999864

>d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (s)-1-phenylethanol dehydrogenase
species: Azoarcus sp. ebn1 [TaxId: 76114]

Probab=89.89  E-value=0.49  Score=39.94  Aligned_cols=34  Identities=21%  Similarity=0.263  Sum_probs=28.5

Q ss_pred             cEEEEECC-CcchHHHHHHHHHCCCeeEEecCCHH
Q psy9056         221 KTVAVLGA-GLMGAGIAHVTVDKGYNTIVKDSFEK  254 (359)
Q Consensus       221 ~kI~IIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~  254 (359)
                      |.+-|-|+ +-+|.++|..|++.|++|++.|++++
T Consensus         6 KvalVTGas~GIG~aia~~la~~Ga~V~~~~~~~~   40 (247)
T d2ew8a1           6 KLAVITGGANGIGRAIAERFAVEGADIAIADLVPA   40 (247)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCch
Confidence            34445575 77999999999999999999999875

>d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=89.76  E-value=0.13  Score=44.82  Aligned_cols=33  Identities=27%  Similarity=0.350  Sum_probs=30.2

Q ss_pred             cEEEEECC-CcchHHHHHHHHHCCCeeEEecCCH
Q psy9056         221 KTVAVLGA-GLMGAGIAHVTVDKGYNTIVKDSFE  253 (359)
Q Consensus       221 ~kI~IIG~-G~mG~~iA~~l~~~G~~V~l~d~~~  253 (359)
                      |+|-|.|+ |.+|+.++..|.++||+|+.+|+..
T Consensus         1 k~vLItG~tGfiG~~l~~~Ll~~g~~V~~~~r~~   34 (321)
T d1rpna_           1 RSALVTGITGQDGAYLAKLLLEKGYRVHGLVARR   34 (321)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCC
Confidence            57889996 9999999999999999999999864

>d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.73  E-value=0.12  Score=45.80  Aligned_cols=31  Identities=29%  Similarity=0.518  Sum_probs=28.6

Q ss_pred             cEEEEECC-CcchHHHHHHHHHCCCeeEEecC
Q psy9056         221 KTVAVLGA-GLMGAGIAHVTVDKGYNTIVKDS  251 (359)
Q Consensus       221 ~kI~IIG~-G~mG~~iA~~l~~~G~~V~l~d~  251 (359)
                      +||-|.|+ |.+|+.++..|++.|++|+++|.
T Consensus         3 kKILITG~tGfIGs~lv~~Ll~~g~~V~~ld~   34 (346)
T d1ek6a_           3 EKVLVTGGAGYIGSHTVLELLEAGYLPVVIDN   34 (346)
T ss_dssp             SEEEEETTTSHHHHHHHHHHHHTTCCEEEEEC
T ss_pred             CeEEEECCCcHHHHHHHHHHHHCcCEEEEEEC
Confidence            68999996 99999999999999999999873

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=89.57  E-value=0.81  Score=36.05  Aligned_cols=40  Identities=25%  Similarity=0.245  Sum_probs=35.4

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCC-eeEEecCCHHHHHHHH
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGY-NTIVKDSFEKGLARGL  260 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~-~V~l~d~~~~~l~~~~  260 (359)
                      .+|.|+|+|-+|...+..+...|. .|+..|+++++++.+.
T Consensus        30 dtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~   70 (176)
T d2jhfa2          30 STCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAK   70 (176)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHH
T ss_pred             CEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHHHHH
Confidence            689999999999999999999985 8999999999877654

>d1e7wa_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Leishmania major [TaxId: 5664]

Probab=89.57  E-value=0.74  Score=39.03  Aligned_cols=41  Identities=22%  Similarity=0.234  Sum_probs=30.7

Q ss_pred             EEEE-CC-CcchHHHHHHHHHCCCeeEEecC-CHHHHHHHHHHH
Q psy9056         223 VAVL-GA-GLMGAGIAHVTVDKGYNTIVKDS-FEKGLARGLGQI  263 (359)
Q Consensus       223 I~II-G~-G~mG~~iA~~l~~~G~~V~l~d~-~~~~l~~~~~~~  263 (359)
                      |+|| |+ +-+|.++|..|++.|.+|++.++ +++.++...+.+
T Consensus         4 VAlITGas~GIG~aiA~~la~~Ga~V~i~~~~~~~~~~~~~~~l   47 (284)
T d1e7wa_           4 VALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALSATL   47 (284)
T ss_dssp             EEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHH
T ss_pred             EEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCCHHHHHHHHHHH
Confidence            6666 54 77999999999999999988654 555555554443

>d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Pyrobaculum islandicum [TaxId: 2277]

Probab=89.51  E-value=0.28  Score=41.65  Aligned_cols=30  Identities=33%  Similarity=0.303  Sum_probs=27.3

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCCeeEEec
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKD  250 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d  250 (359)
                      ++|.|-|.|++|...|..|.+.|..|+.++
T Consensus        32 ~~v~IqGfGnVG~~~a~~L~~~Gakvv~vs   61 (242)
T d1v9la1          32 KTVAIQGMGNVGRWTAYWLEKMGAKVIAVS   61 (242)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCeEEEee
Confidence            799999999999999999999999887553

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.48  E-value=0.12  Score=39.68  Aligned_cols=36  Identities=19%  Similarity=0.353  Sum_probs=30.2

Q ss_pred             cEEEEECCCcchHHHHHHHHH----CCCeeEEecCCHHHH
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVD----KGYNTIVKDSFEKGL  256 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~----~G~~V~l~d~~~~~l  256 (359)
                      ++|.|||+|..|.-+|..+++    .|.+|+++++++.-+
T Consensus        38 k~i~IvGgG~~G~E~A~~l~~~~~~~g~~Vt~i~~~~~~l   77 (137)
T d1m6ia2          38 KSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNM   77 (137)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSSTT
T ss_pred             CEEEEECCCHHHHHHHHHHHHHHHhcCCEEEEecccccCC
Confidence            589999999999999988853    589999998876543

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=89.41  E-value=0.12  Score=43.03  Aligned_cols=32  Identities=28%  Similarity=0.507  Sum_probs=29.7

Q ss_pred             EEEEECCCcchHHHHHHHHHCCCeeEEecCCH
Q psy9056         222 TVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFE  253 (359)
Q Consensus       222 kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~  253 (359)
                      -|.|||+|.-|.+.|..+++.|++|.++|.++
T Consensus         8 DviIIG~GPaGlsaA~~aa~~G~~V~viE~~~   39 (229)
T d1ojta1           8 DVVVLGGGPGGYSAAFAAADEGLKVAIVERYK   39 (229)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCeEEEEeccC
Confidence            38899999999999999999999999999765

>d1snya_ c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase sniffer
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=89.28  E-value=0.11  Score=43.97  Aligned_cols=42  Identities=7%  Similarity=0.088  Sum_probs=35.7

Q ss_pred             CccEEEEECC-CcchHHHHHHHH---HCCCeeEEecCCHHHHHHHH
Q psy9056         219 PVKTVAVLGA-GLMGAGIAHVTV---DKGYNTIVKDSFEKGLARGL  260 (359)
Q Consensus       219 ~~~kI~IIG~-G~mG~~iA~~l~---~~G~~V~l~d~~~~~l~~~~  260 (359)
                      |||+|-|-|+ +-+|.++|..|+   +.|+.|++.+|+++++++..
T Consensus         1 ~MKtilITGas~GIG~a~a~~l~~~a~~g~~V~~~~r~~~~~~~~~   46 (248)
T d1snya_           1 HMNSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAKELE   46 (248)
T ss_dssp             CCSEEEESCCSSHHHHHHHHHHHTSSSCCSEEEEEESCTTSCHHHH
T ss_pred             CcCEEEEeCCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHH
Confidence            6899999997 779999998886   57999999999998876643

>d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha-hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=89.24  E-value=0.13  Score=43.57  Aligned_cols=35  Identities=17%  Similarity=0.211  Sum_probs=29.5

Q ss_pred             ccEEEEECC-CcchHHHHHHHHHCCCeeEEecCCHH
Q psy9056         220 VKTVAVLGA-GLMGAGIAHVTVDKGYNTIVKDSFEK  254 (359)
Q Consensus       220 ~~kI~IIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~  254 (359)
                      ||-|-|-|+ +-+|.++|..|++.|++|++.|++++
T Consensus         1 mkVvlITGas~GIG~aiA~~la~~Ga~V~~~~~~~~   36 (257)
T d1fjha_           1 MSIIVISGCATGIGAATRKVLEAAGHQIVGIDIRDA   36 (257)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECChH
Confidence            455666685 77999999999999999999998864

>d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sulfolipid biosynthesis protein SQD1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=89.17  E-value=0.13  Score=46.35  Aligned_cols=30  Identities=30%  Similarity=0.429  Sum_probs=28.4

Q ss_pred             cEEEEECC-CcchHHHHHHHHHCCCeeEEec
Q psy9056         221 KTVAVLGA-GLMGAGIAHVTVDKGYNTIVKD  250 (359)
Q Consensus       221 ~kI~IIG~-G~mG~~iA~~l~~~G~~V~l~d  250 (359)
                      +||-|.|+ |.+|+.++..|++.||+|+++|
T Consensus         2 ~kILVTGatGfiG~~lv~~Ll~~g~~V~~iD   32 (393)
T d1i24a_           2 SRVMVIGGDGYCGWATALHLSKKNYEVCIVD   32 (393)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCcCEEEEEe
Confidence            58999996 9999999999999999999998

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

Probab=89.11  E-value=0.11  Score=45.52  Aligned_cols=32  Identities=25%  Similarity=0.348  Sum_probs=29.8

Q ss_pred             EEEEECCCcchHHHHHHHHHCCCeeEEecCCH
Q psy9056         222 TVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFE  253 (359)
Q Consensus       222 kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~  253 (359)
                      -|.|||+|.-|.+.|..++++|++|++++..+
T Consensus        25 DVvVIG~G~aGl~aA~~la~~G~~V~llEk~~   56 (322)
T d1d4ca2          25 DVVIIGSGGAGLAAAVSARDAGAKVILLEKEP   56 (322)
T ss_dssp             SEEEECSSHHHHHHHHHHHTTTCCEEEECSSS
T ss_pred             eEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            49999999999999999999999999999754

>d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=89.03  E-value=0.86  Score=38.09  Aligned_cols=34  Identities=24%  Similarity=0.249  Sum_probs=29.5

Q ss_pred             cEEEEECC-CcchHHHHHHHHHCCCeeEEecCCHH
Q psy9056         221 KTVAVLGA-GLMGAGIAHVTVDKGYNTIVKDSFEK  254 (359)
Q Consensus       221 ~kI~IIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~  254 (359)
                      |++-|-|+ +-+|.++|..|++.|++|++.+++.+
T Consensus         8 K~~lITGas~GIG~aia~~la~~Ga~V~~~~r~~~   42 (237)
T d1uzma1           8 RSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSG   42 (237)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSSC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCcc
Confidence            56666676 67999999999999999999999865

>d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=88.98  E-value=0.1  Score=43.85  Aligned_cols=34  Identities=26%  Similarity=0.425  Sum_probs=31.0

Q ss_pred             cEEEEECC-CcchHHHHHHHHHCCCeeEEecCCHH
Q psy9056         221 KTVAVLGA-GLMGAGIAHVTVDKGYNTIVKDSFEK  254 (359)
Q Consensus       221 ~kI~IIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~  254 (359)
                      +||-|.|+ |-+|.++|..|+++|++|++.|++++
T Consensus         3 gkVlITGas~GIG~aia~~l~~~G~~V~~~~~~~~   37 (235)
T d1ooea_           3 GKVIVYGGKGALGSAILEFFKKNGYTVLNIDLSAN   37 (235)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCch
Confidence            58888886 99999999999999999999999865

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=88.97  E-value=0.11  Score=42.69  Aligned_cols=32  Identities=22%  Similarity=0.280  Sum_probs=29.4

Q ss_pred             EEEEECCCcchHHHHHHHHHCCCeeEEecCCH
Q psy9056         222 TVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFE  253 (359)
Q Consensus       222 kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~  253 (359)
                      -|.|||+|.-|...|..+++.|.+|+++|.++
T Consensus         5 DvvVIGgGpaGl~aA~~aa~~G~kV~vie~~~   36 (221)
T d1dxla1           5 DVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRG   36 (221)
T ss_dssp             CEEEECCSHHHHHHHHHHHHHTCCEEEEECSS
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEEecC
Confidence            37899999999999999999999999998753

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

Probab=88.88  E-value=0.14  Score=45.16  Aligned_cols=30  Identities=30%  Similarity=0.520  Sum_probs=28.4

Q ss_pred             EEEEECCCcchHHHHHHHHHCCCeeEEecC
Q psy9056         222 TVAVLGAGLMGAGIAHVTVDKGYNTIVKDS  251 (359)
Q Consensus       222 kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~  251 (359)
                      -|.|||+|.-|..+|..|+++|++|++++.
T Consensus         6 DviIVGsG~aG~v~A~~La~~G~kVlvLEa   35 (379)
T d2f5va1           6 DVVIVGSGPIGCTYARELVGAGYKVAMFDI   35 (379)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECS
T ss_pred             cEEEECcCHHHHHHHHHHhhCCCeEEEEec
Confidence            489999999999999999999999999985

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=88.73  E-value=1.4  Score=36.40  Aligned_cols=92  Identities=16%  Similarity=0.113  Sum_probs=59.7

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhccccc-ccCc---CC
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVG-TLSY---DP  296 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~-~~~~---~~  296 (359)
                      ++|-=||+|. | .++..|++.|.+|+++|.+++-++.+++.....       +.           ++.+ ..|.   ..
T Consensus        43 ~~iLDiGcGt-G-~~~~~l~~~~~~v~gvD~s~~mi~~a~~~~~~~-------~~-----------~i~~~~~d~~~l~~  102 (251)
T d1wzna1          43 RRVLDLACGT-G-IPTLELAERGYEVVGLDLHEEMLRVARRKAKER-------NL-----------KIEFLQGDVLEIAF  102 (251)
T ss_dssp             CEEEEETCTT-C-HHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT-------TC-----------CCEEEESCGGGCCC
T ss_pred             CEEEEeCCCC-C-ccchhhcccceEEEEEeeccccccccccccccc-------cc-----------cchheehhhhhccc
Confidence            5899999998 4 446678899999999999999888776643311       10           1111 1122   21


Q ss_pred             CCCccEEEEcc----cCCHHHHHHHHHHHHHhCCCCcEEE
Q psy9056         297 FKNADMVIEAV----FEDINIKHQVIKEIEAVVPPHCVVA  332 (359)
Q Consensus       297 l~~aD~Vi~av----p~~~~~k~~v~~~l~~~~~~~~ii~  332 (359)
                      -..-|+|+..-    .-+..-.+.+++++.+.++|+.+++
T Consensus       103 ~~~fD~I~~~~~~~~~~~~~~~~~~L~~~~~~LkpgG~li  142 (251)
T d1wzna1         103 KNEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFI  142 (251)
T ss_dssp             CSCEEEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEE
T ss_pred             ccccchHhhhhhhhhcCChHHHHHHHHHHHHHcCCCcEEE
Confidence            23468877542    1233345678899999998888654

>d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

Probab=88.40  E-value=0.097  Score=46.46  Aligned_cols=32  Identities=22%  Similarity=0.380  Sum_probs=28.0

Q ss_pred             ccEEEEECC-CcchHHHHHHHHHCCCeeEEecC
Q psy9056         220 VKTVAVLGA-GLMGAGIAHVTVDKGYNTIVKDS  251 (359)
Q Consensus       220 ~~kI~IIG~-G~mG~~iA~~l~~~G~~V~l~d~  251 (359)
                      |+||-|.|+ |.+|+.++..|.++|++|.++.+
T Consensus         2 ~mkILVTGgtGfIGs~lv~~L~~~g~~v~v~~~   34 (346)
T d1oc2a_           2 FKNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVL   34 (346)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHHCTTCEEEEE
T ss_pred             cCEEEEeCCCcHHHHHHHHHHHHCCCCeEEEEE
Confidence            789999995 99999999999999998666644

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

Probab=88.36  E-value=0.15  Score=45.34  Aligned_cols=30  Identities=23%  Similarity=0.258  Sum_probs=28.4

Q ss_pred             EEEEECCCcchHHHHHHHHHCCCeeEEecC
Q psy9056         222 TVAVLGAGLMGAGIAHVTVDKGYNTIVKDS  251 (359)
Q Consensus       222 kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~  251 (359)
                      -|-|||+|.-|..+|..|+++|++|+++++
T Consensus         4 ~VIVVGsG~aG~v~A~rLaeaG~~VlvLEa   33 (367)
T d1n4wa1           4 PAVVIGTGYGAAVSALRLGEAGVQTLMLEM   33 (367)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEES
T ss_pred             eEEEeCcCHHHHHHHHHHHHCcCeEEEEec
Confidence            478999999999999999999999999987

>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: UBA3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.21  E-value=0.17  Score=46.76  Aligned_cols=33  Identities=27%  Similarity=0.310  Sum_probs=30.4

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCC-eeEEecCCH
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGY-NTIVKDSFE  253 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~-~V~l~d~~~  253 (359)
                      .||.|||+|.+|+.++..|+..|. +++++|.+.
T Consensus        38 ~kVlvvG~GglG~ei~k~L~~~Gvg~i~lvD~D~   71 (426)
T d1yovb1          38 CKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDT   71 (426)
T ss_dssp             CCEEEECSSTTHHHHHHHHHTTTCCCEEEECCCB
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCeEEEEECCC
Confidence            489999999999999999999998 899998764

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=88.03  E-value=0.6  Score=36.85  Aligned_cols=40  Identities=15%  Similarity=0.036  Sum_probs=33.6

Q ss_pred             cEEEEECC-CcchHHHHHHHHHCCCeeEEecCCHHHHHHHH
Q psy9056         221 KTVAVLGA-GLMGAGIAHVTVDKGYNTIVKDSFEKGLARGL  260 (359)
Q Consensus       221 ~kI~IIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~  260 (359)
                      .+|.|.|+ |.+|....+.+...|.+|+..++++++.+.++
T Consensus        30 ~~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~~~~s~~k~~~~~   70 (179)
T d1qora2          30 EQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSAL   70 (179)
T ss_dssp             CEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHH
T ss_pred             CEEEEEccccccchHHHHHHHHhCCeEeecccchHHHHHHH
Confidence            58999976 55888888888888999999999999877654

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.89  E-value=0.23  Score=41.41  Aligned_cols=107  Identities=8%  Similarity=-0.029  Sum_probs=60.5

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHH-HHhhhccccc-ccCc----
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALD-RDRYLASLVG-TLSY----  294 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~i~~-~~~~----  294 (359)
                      .+|-.+|+|. | ..+..|++.|++|+.+|.+++.++.+.+.......... ........ ......++.+ ..|.    
T Consensus        47 ~rvLd~GCG~-G-~~a~~LA~~G~~V~gvD~S~~ai~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~d~~~l~  123 (229)
T d2bzga1          47 LRVFFPLCGK-A-VEMKWFADRGHSVVGVEISELGIQEFFTEQNLSYSEEP-ITEIPGTKVFKSSSGNISLYCCSIFDLP  123 (229)
T ss_dssp             CEEEETTCTT-C-THHHHHHHTTCEEEEECSCHHHHHHHHHHTTCCEEEEE-CTTSTTCEEEEETTSSEEEEESCGGGGG
T ss_pred             CEEEEeCCCC-c-HHHHHHHhCCCcEEEEeCCHHHHHHHHHHhhccccccc-hhcccccceeeecCCcEEEEEcchhhcc
Confidence            5899999999 4 66888899999999999999998876653321100000 00000000 0000011221 1121    


Q ss_pred             -CCCCCccEEEEcc---cCCHHHHHHHHHHHHHhCCCCcE
Q psy9056         295 -DPFKNADMVIEAV---FEDINIKHQVIKEIEAVVPPHCV  330 (359)
Q Consensus       295 -~~l~~aD~Vi~av---p~~~~~k~~v~~~l~~~~~~~~i  330 (359)
                       .....-|+|+.+.   .-..+..+.+++.+...++|+..
T Consensus       124 ~~~~~~fd~i~~~~~l~~~~~~~r~~~~~~~~~~LkpgG~  163 (229)
T d2bzga1         124 RTNIGKFDMIWDRGALVAINPGDRKCYADTMFSLLGKKFQ  163 (229)
T ss_dssp             GSCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEE
T ss_pred             ccccCceeEEEEEEEEEeccchhhHHHHHHHHhhcCCcce
Confidence             1224457777543   11233466788899999999884

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=87.86  E-value=0.068  Score=42.89  Aligned_cols=30  Identities=30%  Similarity=0.473  Sum_probs=26.4

Q ss_pred             EEEEECCCcchHHHHHHHHHCCCeeEEecC
Q psy9056         222 TVAVLGAGLMGAGIAHVTVDKGYNTIVKDS  251 (359)
Q Consensus       222 kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~  251 (359)
                      +|.|||+|..|..+|..|.+.|++|.++.+
T Consensus         5 ~VvIIGgG~~G~e~A~~l~~~g~~v~i~~~   34 (183)
T d1d7ya1           5 PVVVLGAGLASVSFVAELRQAGYQGLITVV   34 (183)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHTCCSCEEEE
T ss_pred             CEEEECccHHHHHHHHHHHhcCCceEEEEE
Confidence            599999999999999999999987766544

>d2h1qa1 c.67.3.1 (A:1-251) Hypothetical protein Dhaf_3308 {Desulfitobacterium hafniense [TaxId: 49338]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: Dhaf3308-like
family: Dhaf3308-like
domain: Hypothetical protein Dhaf 3308
species: Desulfitobacterium hafniense [TaxId: 49338]

Probab=87.78  E-value=0.21  Score=42.74  Aligned_cols=80  Identities=9%  Similarity=0.034  Sum_probs=54.7

Q ss_pred             ccEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcCCCCC
Q psy9056         220 VKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPFKN  299 (359)
Q Consensus       220 ~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~  299 (359)
                      -+||++||.  +  +....+.+.|.+++++|++++.                  +.+.+            ....+.+..
T Consensus       122 g~kV~vIG~--~--P~v~~l~~~~~~~~VlE~~p~~------------------gd~p~------------~~~~~lLp~  167 (251)
T d2h1qa1         122 GKKVGVVGH--F--PHLESLLEPICDLSILEWSPEE------------------GDYPL------------PASEFILPE  167 (251)
T ss_dssp             TSEEEEESC--C--TTHHHHHTTTSEEEEEESSCCT------------------TCEEG------------GGHHHHGGG
T ss_pred             CCEEEEEec--c--hhHHHHHhcCCcEEEEeCCCCC------------------CCCCc------------hHHHHhhhc
Confidence            379999974  5  4556677889999999999741                  00000            001135899


Q ss_pred             ccEEEEcccCCHHHHHHHHHHHHHhCCCCc-EEEEcCC
Q psy9056         300 ADMVIEAVFEDINIKHQVIKEIEAVVPPHC-VVATNTS  336 (359)
Q Consensus       300 aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~-ii~s~ts  336 (359)
                      ||+||+..   .++...-+..|.+++++.. +++...|
T Consensus       168 aD~viiTG---sTlvN~Tl~~LL~~~~~a~~vvl~GPS  202 (251)
T d2h1qa1         168 CDYVYITC---ASVVDKTLPRLLELSRNARRITLVGPG  202 (251)
T ss_dssp             CSEEEEET---HHHHHTCHHHHHHHTTTSSEEEEESTT
T ss_pred             CCEEEEEe---chhhcCCHHHHHHhCCcCCEEEEECCC
Confidence            99999977   4667778889999998775 5444433

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=87.74  E-value=0.17  Score=41.65  Aligned_cols=31  Identities=23%  Similarity=0.246  Sum_probs=29.4

Q ss_pred             EEEEECCCcchHHHHHHHHHCCCeeEEecCC
Q psy9056         222 TVAVLGAGLMGAGIAHVTVDKGYNTIVKDSF  252 (359)
Q Consensus       222 kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~  252 (359)
                      .|.|||+|..|...|..+++.|.+|.+++.+
T Consensus         7 DlvVIG~GpaGl~aA~~aa~~G~~V~liE~~   37 (220)
T d1lvla1           7 TLLIIGGGPGGYVAAIRAGQLGIPTVLVEGQ   37 (220)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHTCCEEEECSS
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEecC
Confidence            5899999999999999999999999999975

>d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=87.70  E-value=0.32  Score=36.62  Aligned_cols=37  Identities=22%  Similarity=0.333  Sum_probs=31.6

Q ss_pred             CccEEEEECCC-----------cchHHHHHHHHHCCCeeEEecCCHHH
Q psy9056         219 PVKTVAVLGAG-----------LMGAGIAHVTVDKGYNTIVKDSFEKG  255 (359)
Q Consensus       219 ~~~kI~IIG~G-----------~mG~~iA~~l~~~G~~V~l~d~~~~~  255 (359)
                      ..+||-|||+|           +.+...+..|.+.|+++++++-||+.
T Consensus         3 ~~kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~~g~~~IliN~NPeT   50 (121)
T d1a9xa4           3 DREKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIMVNCNPET   50 (121)
T ss_dssp             SSCEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHTTCEEEEECCCTTS
T ss_pred             CCCEEEEECCCcCcccccchhhHHHHHHHHHHHhcCCeEEEEecChhh
Confidence            46899999998           45677788899999999999999973

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=87.60  E-value=0.61  Score=36.58  Aligned_cols=41  Identities=24%  Similarity=0.241  Sum_probs=34.9

Q ss_pred             cEEEEECC-CcchHHHHHHHHHCCC-eeEEecCCHHHHHHHHH
Q psy9056         221 KTVAVLGA-GLMGAGIAHVTVDKGY-NTIVKDSFEKGLARGLG  261 (359)
Q Consensus       221 ~kI~IIG~-G~mG~~iA~~l~~~G~-~V~l~d~~~~~l~~~~~  261 (359)
                      .+|.|+|+ |.+|...+..+...|. .|+++++++++++.+++
T Consensus        29 ~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~   71 (170)
T d1jvba2          29 KTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKR   71 (170)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHH
T ss_pred             CEEEEEeccccceeeeeecccccccccccccccchhhHHHHHH
Confidence            68999995 9999998888888885 89999999998776543

>d1mxha_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=87.50  E-value=0.44  Score=40.09  Aligned_cols=34  Identities=26%  Similarity=0.448  Sum_probs=28.0

Q ss_pred             EEEE-CC-CcchHHHHHHHHHCCCeeEEecCCHHHH
Q psy9056         223 VAVL-GA-GLMGAGIAHVTVDKGYNTIVKDSFEKGL  256 (359)
Q Consensus       223 I~II-G~-G~mG~~iA~~l~~~G~~V~l~d~~~~~l  256 (359)
                      |+|| |+ +-+|.++|..|+++|++|++.+++.+.+
T Consensus         3 vAlVTGas~GIG~aia~~la~~G~~Vvi~~r~~~~~   38 (266)
T d1mxha_           3 AAVITGGARRIGHSIAVRLHQQGFRVVVHYRHSEGA   38 (266)
T ss_dssp             EEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHH
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCchHH
Confidence            3444 54 6799999999999999999999986654

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.25  E-value=0.22  Score=40.70  Aligned_cols=30  Identities=27%  Similarity=0.328  Sum_probs=28.4

Q ss_pred             EEEECCCcchHHHHHHHHHCCCeeEEecCC
Q psy9056         223 VAVLGAGLMGAGIAHVTVDKGYNTIVKDSF  252 (359)
Q Consensus       223 I~IIG~G~mG~~iA~~l~~~G~~V~l~d~~  252 (359)
                      |.|||+|..|...|..+++.|.+|.++|.+
T Consensus         6 viIIG~GpaG~~aA~~aar~G~kV~vIEk~   35 (221)
T d3grsa1           6 YLVIGGGSGGLASARRAAELGARAAVVESH   35 (221)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             EEEECCCHHHHHHHHHHHHCCCEEEEEecc
Confidence            789999999999999999999999999865

>d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-N-acetylglucosamine 4-epimerase WbpP
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=87.19  E-value=0.2  Score=44.15  Aligned_cols=33  Identities=15%  Similarity=0.289  Sum_probs=29.8

Q ss_pred             CccEEEEECC-CcchHHHHHHHHHCCCeeEEecC
Q psy9056         219 PVKTVAVLGA-GLMGAGIAHVTVDKGYNTIVKDS  251 (359)
Q Consensus       219 ~~~kI~IIG~-G~mG~~iA~~l~~~G~~V~l~d~  251 (359)
                      ..|+|-|.|+ |.+|+.++..|.+.|++|+++|+
T Consensus        15 ~~k~iLVTG~tGfIGs~lv~~L~~~g~~V~~~d~   48 (341)
T d1sb8a_          15 QPKVWLITGVAGFIGSNLLETLLKLDQKVVGLDN   48 (341)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCcCEEEEEEC
Confidence            3478999886 99999999999999999999986

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=87.12  E-value=0.16  Score=42.08  Aligned_cols=31  Identities=19%  Similarity=0.257  Sum_probs=28.6

Q ss_pred             EEEEECCCcchHHHHHHHHHCCCeeEEecCC
Q psy9056         222 TVAVLGAGLMGAGIAHVTVDKGYNTIVKDSF  252 (359)
Q Consensus       222 kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~  252 (359)
                      -|.|||+|.-|.+.|..+++.|++|.++|..
T Consensus         5 DviVIG~GpaGl~aA~~aa~~G~kV~viE~~   35 (235)
T d1h6va1           5 DLIIIGGGSGGLAAAKEAAKFDKKVMVLDFV   35 (235)
T ss_dssp             EEEEECCSHHHHHHHHHHGGGCCCEEEECCC
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence            3789999999999999999999999999954

>d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase)
species: Escherichia coli [TaxId: 562]

Probab=86.92  E-value=0.16  Score=44.07  Aligned_cols=33  Identities=21%  Similarity=0.390  Sum_probs=29.4

Q ss_pred             cEEEEECC-CcchHHHHHHHHHCCCeeEEecCCH
Q psy9056         221 KTVAVLGA-GLMGAGIAHVTVDKGYNTIVKDSFE  253 (359)
Q Consensus       221 ~kI~IIG~-G~mG~~iA~~l~~~G~~V~l~d~~~  253 (359)
                      +||.|.|+ |.+|+.++..|.+.|+.|++.+...
T Consensus         3 kkIlITG~tGfiG~~l~~~L~~~g~~vi~~~~~~   36 (315)
T d1e6ua_           3 QRVFIAGHRGMVGSAIRRQLEQRGDVELVLRTRD   36 (315)
T ss_dssp             EEEEEETTTSHHHHHHHHHHTTCTTEEEECCCTT
T ss_pred             CEEEEEcCCcHHHHHHHHHHHHCcCEEEEecCch
Confidence            58999996 9999999999999999998887553

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=86.90  E-value=0.22  Score=45.06  Aligned_cols=33  Identities=21%  Similarity=0.281  Sum_probs=30.0

Q ss_pred             EEEEECCCcchHHHHHHHHH------CCCeeEEecCCHH
Q psy9056         222 TVAVLGAGLMGAGIAHVTVD------KGYNTIVKDSFEK  254 (359)
Q Consensus       222 kI~IIG~G~mG~~iA~~l~~------~G~~V~l~d~~~~  254 (359)
                      -|.|||+|.-|++.|..|++      +|++|.++|+...
T Consensus        34 DViIVGgGPAGlsaA~~LA~l~~~~~~Gl~VlllEK~~~   72 (380)
T d2gmha1          34 DVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAH   72 (380)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSS
T ss_pred             CEEEECCCHHHHHHHHHHHhhhhhhcCCCEEEEEcCCCC
Confidence            49999999999999999997      8999999998753

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=86.84  E-value=0.18  Score=42.98  Aligned_cols=35  Identities=23%  Similarity=0.280  Sum_probs=30.3

Q ss_pred             ccEEEEECCCcchHHH-----HHHHHHCCCeeEEecCCHH
Q psy9056         220 VKTVAVLGAGLMGAGI-----AHVTVDKGYNTIVKDSFEK  254 (359)
Q Consensus       220 ~~kI~IIG~G~mG~~i-----A~~l~~~G~~V~l~d~~~~  254 (359)
                      |++|+|.|=|-+|.+.     |..|++.|++|.++|.|++
T Consensus         1 mr~Iai~gKGGvGKTT~a~nLA~~LA~~G~rVllID~D~q   40 (269)
T d1cp2a_           1 MRQVAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVVGCDPK   40 (269)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEEECTT
T ss_pred             CCEEEEECCCcCCHHHHHHHHHHHHHhCCCcEEEEecCCC
Confidence            7899999988888765     5688899999999999975

>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Brevibacterium sterolicum [TaxId: 1702]

Probab=86.83  E-value=0.22  Score=44.31  Aligned_cols=30  Identities=27%  Similarity=0.300  Sum_probs=28.3

Q ss_pred             EEEEECCCcchHHHHHHHHHCCCeeEEecC
Q psy9056         222 TVAVLGAGLMGAGIAHVTVDKGYNTIVKDS  251 (359)
Q Consensus       222 kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~  251 (359)
                      -+-|||+|.-|..+|..|+++|++|+++++
T Consensus         9 dvIVVGsG~aG~v~A~rLaeaG~~VlvLEa   38 (370)
T d3coxa1           9 PALVIGSGYGGAVAALRLTQAGIPTQIVEM   38 (370)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCeEEEEeC
Confidence            478999999999999999999999999996

>d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=86.82  E-value=0.24  Score=43.23  Aligned_cols=32  Identities=22%  Similarity=0.241  Sum_probs=28.2

Q ss_pred             cEEEEECC-CcchHHHHHHHHHCCCeeEEecCC
Q psy9056         221 KTVAVLGA-GLMGAGIAHVTVDKGYNTIVKDSF  252 (359)
Q Consensus       221 ~kI~IIG~-G~mG~~iA~~l~~~G~~V~l~d~~  252 (359)
                      |++-|.|+ |.+|+.++..|.+.||+|+.+|+.
T Consensus         2 k~~LVTGatGfiG~~lv~~Ll~~g~~V~~~~r~   34 (339)
T d1n7ha_           2 KIALITGITGQDGSYLTEFLLGKGYEVHGLIRR   34 (339)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             CEEEEeCCccHHHHHHHHHHHHCcCEEEEEECC
Confidence            45666786 999999999999999999999985

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=86.80  E-value=0.24  Score=40.33  Aligned_cols=32  Identities=22%  Similarity=0.176  Sum_probs=29.2

Q ss_pred             EEEEECCCcchHHHHHHHHHCCCeeEEecCCH
Q psy9056         222 TVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFE  253 (359)
Q Consensus       222 kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~  253 (359)
                      .|.|||+|.-|.+.|..+++.|.+|.+++...
T Consensus         5 DviVIG~GpaGl~aA~~aar~G~kV~vIEk~~   36 (223)
T d1ebda1           5 ETLVVGAGPGGYVAAIRAAQLGQKVTIVEKGN   36 (223)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCEEEEEecCC
Confidence            47899999999999999999999999998653

>d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.79  E-value=0.23  Score=43.63  Aligned_cols=33  Identities=27%  Similarity=0.365  Sum_probs=29.2

Q ss_pred             cEEE-EECC-CcchHHHHHHHHHCCCeeEEecCCH
Q psy9056         221 KTVA-VLGA-GLMGAGIAHVTVDKGYNTIVKDSFE  253 (359)
Q Consensus       221 ~kI~-IIG~-G~mG~~iA~~l~~~G~~V~l~d~~~  253 (359)
                      |||+ |.|+ |.+|+.++..|.++||+|+.+|+..
T Consensus         1 kKI~LVTG~tGfIG~~l~~~Ll~~g~~V~~i~r~~   35 (347)
T d1t2aa_           1 RNVALITGITGQDGSYLAEFLLEKGYEVHGIVRRS   35 (347)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCC
T ss_pred             CCEEEEecCCcHHHHHHHHHHHHCcCEEEEEECCC
Confidence            5884 7786 9999999999999999999999864

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=86.57  E-value=1.9  Score=36.42  Aligned_cols=91  Identities=16%  Similarity=0.157  Sum_probs=60.4

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-C--CC
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-D--PF  297 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~--~l  297 (359)
                      ++|-=+|+|. | .++..+++.|.+|+.+|.|++.++.+++..+..       + +.        .++ ...+. +  .-
T Consensus       122 ~~VLDiGcGs-G-~l~i~aa~~g~~V~gvDis~~av~~A~~na~~n-------~-~~--------~~~-~~~d~~~~~~~  182 (254)
T d2nxca1         122 DKVLDLGTGS-G-VLAIAAEKLGGKALGVDIDPMVLPQAEANAKRN-------G-VR--------PRF-LEGSLEAALPF  182 (254)
T ss_dssp             CEEEEETCTT-S-HHHHHHHHTTCEEEEEESCGGGHHHHHHHHHHT-------T-CC--------CEE-EESCHHHHGGG
T ss_pred             CEEEEcccch-h-HHHHHHHhcCCEEEEEECChHHHHHHHHHHHHc-------C-Cc--------eeE-Eeccccccccc
Confidence            5888899997 4 355677888999999999999988877643311       1 10        011 11111 1  12


Q ss_pred             CCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEE
Q psy9056         298 KNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVA  332 (359)
Q Consensus       298 ~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~  332 (359)
                      ...|+|+-..  .......+++.+.+.++|+..++
T Consensus       183 ~~fD~V~ani--~~~~l~~l~~~~~~~LkpGG~li  215 (254)
T d2nxca1         183 GPFDLLVANL--YAELHAALAPRYREALVPGGRAL  215 (254)
T ss_dssp             CCEEEEEEEC--CHHHHHHHHHHHHHHEEEEEEEE
T ss_pred             cccchhhhcc--ccccHHHHHHHHHHhcCCCcEEE
Confidence            4578888655  34556788888988888887554

>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=86.53  E-value=0.17  Score=44.31  Aligned_cols=34  Identities=24%  Similarity=0.293  Sum_probs=30.4

Q ss_pred             cEEEEECCCcchHHHHHHHHHC--CCeeEEecCCHH
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDK--GYNTIVKDSFEK  254 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~--G~~V~l~d~~~~  254 (359)
                      ..|.|||+|.-|.+.|..++++  |++|.++|.++.
T Consensus        51 ~~~~~~g~g~~g~~~a~~~~~~~~~~~~~~~~~~~~   86 (311)
T d2gjca1          51 SDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVA   86 (311)
T ss_dssp             ESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSS
T ss_pred             CCEEEECCCHHHHHHHHHHHHhCCCCeEEEEEcCCC
Confidence            4699999999999999999964  999999998753

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=86.33  E-value=0.66  Score=36.71  Aligned_cols=39  Identities=13%  Similarity=0.063  Sum_probs=33.6

Q ss_pred             cEEEEECC-CcchHHHHHHHHHCCCeeEEecCCHHHHHHH
Q psy9056         221 KTVAVLGA-GLMGAGIAHVTVDKGYNTIVKDSFEKGLARG  259 (359)
Q Consensus       221 ~kI~IIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~  259 (359)
                      .+|.|.|+ |.+|...+..+...|.+|+..+.++++.+.+
T Consensus        27 ~~VlI~ga~g~vG~~~iqla~~~g~~vi~~~~~~~~~~~l   66 (183)
T d1pqwa_          27 ERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREML   66 (183)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHH
T ss_pred             CEEEEECCCCCcccccchhhccccccceeeeccccccccc
Confidence            58999885 9999999999999999999999898876544

>d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermotoga maritima [TaxId: 2336]

Probab=86.17  E-value=0.34  Score=42.41  Aligned_cols=102  Identities=11%  Similarity=0.047  Sum_probs=60.3

Q ss_pred             cEEEEECCCcchHHHHHHHHHCC--CeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhccccc-ccCc-C-
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKG--YNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVG-TLSY-D-  295 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G--~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~-~~~~-~-  295 (359)
                      ++|.|||.|.-|  ++..+++..  -+|.++|+|++.++-+.+.+...-. ....            .++++ ..|. + 
T Consensus        91 k~VLiiGgG~G~--~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~-~~~d------------~rv~v~~~Da~~~  155 (295)
T d1inla_          91 KKVLIIGGGDGG--TLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSC-GFDD------------PRAEIVIANGAEY  155 (295)
T ss_dssp             CEEEEEECTTCH--HHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHG-GGGC------------TTEEEEESCHHHH
T ss_pred             ceEEEecCCchH--HHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhcc-cccC------------CCcEEEhhhHHHH
Confidence            799999999743  455555542  4799999999998887664432111 0111            11211 1111 1 


Q ss_pred             ---CCCCccEEEEcccCCHH------HHHHHHHHHHHhCCCCcEEEEcCCC
Q psy9056         296 ---PFKNADMVIEAVFEDIN------IKHQVIKEIEAVVPPHCVVATNTSA  337 (359)
Q Consensus       296 ---~l~~aD~Vi~avp~~~~------~k~~v~~~l~~~~~~~~ii~s~ts~  337 (359)
                         .-..-|+||.-.++...      .-++.++.+.+.++++.+++..+.+
T Consensus       156 l~~~~~~yDvIi~D~~dp~~~~~~~L~t~efy~~~~~~L~~~Gi~v~q~~s  206 (295)
T d1inla_         156 VRKFKNEFDVIIIDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAETED  206 (295)
T ss_dssp             GGGCSSCEEEEEEEC----------CCSHHHHHHHHHHEEEEEEEEEECCC
T ss_pred             HhcCCCCCCEEEEcCCCCCcCchhhhccHHHHHHHHhhcCCCcEEEEecCC
Confidence               12347888875543211      1357888899999999998876543

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

Probab=86.09  E-value=0.25  Score=43.19  Aligned_cols=30  Identities=40%  Similarity=0.500  Sum_probs=28.5

Q ss_pred             EEEECCCcchHHHHHHHHHCCCeeEEecCC
Q psy9056         223 VAVLGAGLMGAGIAHVTVDKGYNTIVKDSF  252 (359)
Q Consensus       223 I~IIG~G~mG~~iA~~l~~~G~~V~l~d~~  252 (359)
                      |.|||+|.-|.+-|..++++|.+|++++..
T Consensus         8 VvVIG~G~AGl~AAl~aa~~G~~V~liEK~   37 (336)
T d2bs2a2           8 SLVIGGGLAGLRAAVATQQKGLSTIVLSLI   37 (336)
T ss_dssp             EEEECCSHHHHHHHHHHHTTTCCEEEECSS
T ss_pred             EEEECcCHHHHHHHHHHHHCCCCEEEEecC
Confidence            899999999999999999999999999864

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=86.03  E-value=0.32  Score=41.84  Aligned_cols=99  Identities=10%  Similarity=0.062  Sum_probs=58.9

Q ss_pred             cEEEEECCCcchH--HHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhccccc-ccCc-C-
Q psy9056         221 KTVAVLGAGLMGA--GIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVG-TLSY-D-  295 (359)
Q Consensus       221 ~kI~IIG~G~mG~--~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~-~~~~-~-  295 (359)
                      .+|.=+|+|.=..  .+|..+...| +|+.+|.+++.++.+++.++.....              ..+++.+ ..|. + 
T Consensus        98 ~~VLE~G~GsG~lt~~La~~vgp~G-~V~~~d~~~~~~~~Ar~n~~~~~~~--------------~~~nv~~~~~d~~~~  162 (264)
T d1i9ga_          98 ARVLEAGAGSGALTLSLLRAVGPAG-QVISYEQRADHAEHARRNVSGCYGQ--------------PPDNWRLVVSDLADS  162 (264)
T ss_dssp             CEEEEECCTTSHHHHHHHHHHCTTS-EEEEECSCHHHHHHHHHHHHHHHTS--------------CCTTEEEECSCGGGC
T ss_pred             CEEEecCcCCcHHHHHHHHhhCCCc-EEEEecCCHHHHHHHHHhhhhhccC--------------CCceEEEEecccccc
Confidence            5777777765433  3344443333 6999999999999887765532111              0112222 1222 1 


Q ss_pred             C--CCCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCC
Q psy9056         296 P--FKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAI  338 (359)
Q Consensus       296 ~--l~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~  338 (359)
                      .  -...|.||+-+|+..    .+++.+...++++..+++.+..+
T Consensus       163 ~~~~~~fDaV~ldlp~P~----~~l~~~~~~LkpGG~lv~~~P~i  203 (264)
T d1i9ga_         163 ELPDGSVDRAVLDMLAPW----EVLDAVSRLLVAGGVLMVYVATV  203 (264)
T ss_dssp             CCCTTCEEEEEEESSCGG----GGHHHHHHHEEEEEEEEEEESSH
T ss_pred             cccCCCcceEEEecCCHH----HHHHHHHhccCCCCEEEEEeCcc
Confidence            1  255799999999876    44666677778888766544443

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=85.81  E-value=0.21  Score=43.69  Aligned_cols=33  Identities=30%  Similarity=0.373  Sum_probs=30.2

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCCeeEEecCCH
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFE  253 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~  253 (359)
                      .-|.|||+|.-|.+.|..++++|.+|++++..+
T Consensus        20 ~DVvVIGaG~aGl~AA~~aa~~G~~V~vlEK~~   52 (317)
T d1qo8a2          20 TQVLVVGAGSAGFNASLAAKKAGANVILVDKAP   52 (317)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHTCCEEEECSSS
T ss_pred             cCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            469999999999999999999999999998753

>d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=85.73  E-value=0.97  Score=30.95  Aligned_cols=39  Identities=21%  Similarity=0.239  Sum_probs=33.7

Q ss_pred             cEEEEECC-CcchHHHHHHHHHCCCeeEEecCCHHHHHHH
Q psy9056         221 KTVAVLGA-GLMGAGIAHVTVDKGYNTIVKDSFEKGLARG  259 (359)
Q Consensus       221 ~kI~IIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~  259 (359)
                      .+|-|.|+ |.+|......+...|++|+....++++.+..
T Consensus        33 ~~vlI~gasGgVG~~aiQlak~~G~~Vi~~t~s~~k~~~~   72 (77)
T d1o8ca2          33 GEIVVTGASGGVGSTAVALLHKLGYQVVAVSGRESTHEYL   72 (77)
T ss_dssp             CEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHH
T ss_pred             CcEEEEeCCCcHHHHHHHHHHHcCCeEEEEECCHHHHHHH
Confidence            57889886 9999999888888999999999999886654

>d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=85.73  E-value=1.9  Score=37.34  Aligned_cols=33  Identities=27%  Similarity=0.369  Sum_probs=27.4

Q ss_pred             EEEEE-CC-CcchHHHHHHHHHCCCeeEEecCCHH
Q psy9056         222 TVAVL-GA-GLMGAGIAHVTVDKGYNTIVKDSFEK  254 (359)
Q Consensus       222 kI~II-G~-G~mG~~iA~~l~~~G~~V~l~d~~~~  254 (359)
                      |++|| |+ +-+|.++|..|++.|++|++.|++.+
T Consensus         8 KvalITGas~GIG~aiA~~la~~Ga~Vvi~d~~~~   42 (302)
T d1gz6a_           8 RVVLVTGAGGGLGRAYALAFAERGALVVVNDLGGD   42 (302)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHTTCEEEEECCCBC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCch
Confidence            55555 65 77999999999999999999987653

>d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-tyvelose-2-epimerase
species: Salmonella typhi [TaxId: 90370]

Probab=85.51  E-value=0.31  Score=42.26  Aligned_cols=30  Identities=27%  Similarity=0.613  Sum_probs=27.5

Q ss_pred             EEEEECC-CcchHHHHHHHHHCCCeeEEecC
Q psy9056         222 TVAVLGA-GLMGAGIAHVTVDKGYNTIVKDS  251 (359)
Q Consensus       222 kI~IIG~-G~mG~~iA~~l~~~G~~V~l~d~  251 (359)
                      ||-|.|+ |.+|+.++..|.++|++|+++|.
T Consensus         2 KILVTGatGfIGs~lv~~Ll~~g~~V~~id~   32 (338)
T d1orra_           2 KLLITGGCGFLGSNLASFALSQGIDLIVFDN   32 (338)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             EEEEECCCcHHHHHHHHHHHHCcCEEEEEEC
Confidence            7888886 99999999999999999999973

>d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=85.43  E-value=0.24  Score=43.30  Aligned_cols=102  Identities=14%  Similarity=0.081  Sum_probs=62.1

Q ss_pred             cEEEEECCCcchHHHHHHHHHC-CC-eeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhccccc-ccC----
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDK-GY-NTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVG-TLS----  293 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~-G~-~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~-~~~----  293 (359)
                      ++|.|||.|.-|  ++..+.+. +. +|.++|.|++.++.+++.+...- ...+..            +++. ..|    
T Consensus        82 k~VLiiGgG~G~--~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~-~~~~~~------------r~~i~~~Da~~~  146 (290)
T d1xj5a_          82 KKVLVIGGGDGG--VLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVA-IGYEDP------------RVNLVIGDGVAF  146 (290)
T ss_dssp             CEEEEETCSSSH--HHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHH-GGGGST------------TEEEEESCHHHH
T ss_pred             cceEEecCCchH--HHHHHHhcccceeeEEecCCHHHHHHHHHhchhhh-ccccCC------------CcEEEEccHHHH
Confidence            799999999754  44455554 43 79999999999888776543211 111111            1211 111    


Q ss_pred             c-CCC-CCccEEEEcccCCHH-----HHHHHHHHHHHhCCCCcEEEEcCCC
Q psy9056         294 Y-DPF-KNADMVIEAVFEDIN-----IKHQVIKEIEAVVPPHCVVATNTSA  337 (359)
Q Consensus       294 ~-~~l-~~aD~Vi~avp~~~~-----~k~~v~~~l~~~~~~~~ii~s~ts~  337 (359)
                      + +.- ..-|+||.-.++...     ..++.++.+.+.++++.+++.++.+
T Consensus       147 l~~~~~~~yDvIi~D~~dp~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~s  197 (290)
T d1xj5a_         147 LKNAAEGSYDAVIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQAES  197 (290)
T ss_dssp             HHTSCTTCEEEEEECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEECCC
T ss_pred             HhhccccCccEEEEcCCCCCCcchhhCCHHHHHHHHHhcCCCcEEEEecCC
Confidence            1 111 357888865543211     2346788999999999998876543

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=85.14  E-value=0.24  Score=40.38  Aligned_cols=30  Identities=30%  Similarity=0.385  Sum_probs=28.4

Q ss_pred             EEEECCCcchHHHHHHHHHCCCeeEEecCC
Q psy9056         223 VAVLGAGLMGAGIAHVTVDKGYNTIVKDSF  252 (359)
Q Consensus       223 I~IIG~G~mG~~iA~~l~~~G~~V~l~d~~  252 (359)
                      |.|||+|.-|...|..+++.|.+|.++|..
T Consensus         6 viIIGgGpAGl~aA~~aar~G~~V~viE~~   35 (229)
T d3lada1           6 VIVIGAGPGGYVAAIKSAQLGLKTALIEKY   35 (229)
T ss_dssp             EEEECCSHHHHHHHHHHHHHTCCEEEEECC
T ss_pred             EEEECcCHHHHHHHHHHHHCCCeEEEEecc
Confidence            789999999999999999999999999864

>d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=84.48  E-value=0.26  Score=40.97  Aligned_cols=34  Identities=26%  Similarity=0.401  Sum_probs=28.5

Q ss_pred             EEEEECC-CcchHHHHHHHHHCCCeeEEecCCHHH
Q psy9056         222 TVAVLGA-GLMGAGIAHVTVDKGYNTIVKDSFEKG  255 (359)
Q Consensus       222 kI~IIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~  255 (359)
                      ++-|-|+ +-+|.++|..|++.|++|++.|++++.
T Consensus         3 ~alITGas~GIG~aiA~~la~~Ga~V~i~~~~~~~   37 (241)
T d1uaya_           3 SALVTGGASGLGRAAALALKARGYRVVVLDLRREG   37 (241)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHHTCEEEEEESSCCS
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCccc
Confidence            3444465 889999999999999999999998764

>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=84.23  E-value=0.22  Score=43.22  Aligned_cols=101  Identities=12%  Similarity=0.078  Sum_probs=60.7

Q ss_pred             cEEEEECCCcchHHHHHHHHHC-C-CeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhccccc-ccCc-C-
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDK-G-YNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVG-TLSY-D-  295 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~-G-~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~-~~~~-~-  295 (359)
                      ++|.|||.|.-+  ++..+.+. + -+|.++|.|++.++.+.+.+...-      +....       .++.+ ..|. + 
T Consensus        77 ~~vLiiGgG~G~--~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~------~~~~d-------~r~~i~~~D~~~~  141 (274)
T d1iy9a_          77 EHVLVVGGGDGG--VIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIA------GKLDD-------PRVDVQVDDGFMH  141 (274)
T ss_dssp             CEEEEESCTTCH--HHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHH------TTTTS-------TTEEEEESCSHHH
T ss_pred             ceEEecCCCCcH--HHHHHHhcCCcceEEEecCCHHHHHHHHHhChhhc------ccccC-------CCeEEEechHHHH
Confidence            699999999743  34444443 3 489999999999888766543111      11100       12221 1111 1 


Q ss_pred             ---CCCCccEEEEcccCCHH-----HHHHHHHHHHHhCCCCcEEEEcCC
Q psy9056         296 ---PFKNADMVIEAVFEDIN-----IKHQVIKEIEAVVPPHCVVATNTS  336 (359)
Q Consensus       296 ---~l~~aD~Vi~avp~~~~-----~k~~v~~~l~~~~~~~~ii~s~ts  336 (359)
                         .-+.-|+||.-.++...     .-++.++.+.+.++++.+++..+.
T Consensus       142 l~~~~~~yDvIi~D~~~p~~~~~~L~t~eFy~~~~~~L~~~Gv~v~q~~  190 (274)
T d1iy9a_         142 IAKSENQYDVIMVDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQTD  190 (274)
T ss_dssp             HHTCCSCEEEEEESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEECC
T ss_pred             HhhcCCCCCEEEEcCCCCCCcchhhccHHHHHHHHhhcCCCceEEEecC
Confidence               12447888865544211     134778889999999999887653

>d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=84.22  E-value=0.54  Score=35.67  Aligned_cols=38  Identities=32%  Similarity=0.471  Sum_probs=32.4

Q ss_pred             CCccEEEEECCCc-----------chHHHHHHHHHCCCeeEEecCCHHH
Q psy9056         218 TPVKTVAVLGAGL-----------MGAGIAHVTVDKGYNTIVKDSFEKG  255 (359)
Q Consensus       218 ~~~~kI~IIG~G~-----------mG~~iA~~l~~~G~~V~l~d~~~~~  255 (359)
                      .+.+||-|||+|.           .+......|.+.|+++++++-||+.
T Consensus         5 ~~~kkvlilGsGp~~IGq~~EfDy~~~~a~~alke~g~~~iliN~NP~T   53 (127)
T d1a9xa3           5 TDIKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVINVNSNPAT   53 (127)
T ss_dssp             SSCCEEEEECCCSCBTTBCTHHHHHHHHHHHHHHHHTCEEEEECSCTTC
T ss_pred             CCCCEEEEECCCcCcccccchhHHHHHHHHHHHHHcCCeEEEecCchHh
Confidence            5679999999984           4677778899999999999999974

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=84.15  E-value=1.6  Score=34.63  Aligned_cols=93  Identities=8%  Similarity=0.068  Sum_probs=60.5

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhccccc-ccCc----C
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVG-TLSY----D  295 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~-~~~~----~  295 (359)
                      .+|.=||+|.=..++  .+++.+.+|+.+|.+++.++.+++.++..       + +.        +++++ ..+.    .
T Consensus        35 ~~VLDiGcGsG~~s~--~lA~~~~~V~avD~~~~~l~~a~~n~~~~-------g-l~--------~~v~~~~gda~~~~~   96 (186)
T d1l3ia_          35 DVAVDVGCGTGGVTL--ELAGRVRRVYAIDRNPEAISTTEMNLQRH-------G-LG--------DNVTLMEGDAPEALC   96 (186)
T ss_dssp             CEEEEESCTTSHHHH--HHHTTSSEEEEEESCHHHHHHHHHHHHHT-------T-CC--------TTEEEEESCHHHHHT
T ss_pred             CEEEEEECCeEcccc--cccccceEEEEecCCHHHHHHHHHHHHHc-------C-CC--------cceEEEECchhhccc
Confidence            578888988854444  45677789999999999998887654321       1 00        12222 1121    2


Q ss_pred             CCCCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEE
Q psy9056         296 PFKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVAT  333 (359)
Q Consensus       296 ~l~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s  333 (359)
                      .....|+|+...+...  ...+++.+.+.++++..++.
T Consensus        97 ~~~~~D~v~~~~~~~~--~~~~~~~~~~~LkpgG~lvi  132 (186)
T d1l3ia_          97 KIPDIDIAVVGGSGGE--LQEILRIIKDKLKPGGRIIV  132 (186)
T ss_dssp             TSCCEEEEEESCCTTC--HHHHHHHHHHTEEEEEEEEE
T ss_pred             ccCCcCEEEEeCcccc--chHHHHHHHHHhCcCCEEEE
Confidence            3567899987765433  45778888888888885543

>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Azotobacter vinelandii [TaxId: 354]

Probab=84.13  E-value=0.29  Score=42.15  Aligned_cols=36  Identities=17%  Similarity=0.317  Sum_probs=31.2

Q ss_pred             CccEEEEECCCcchHHH-----HHHHHHCCCeeEEecCCHH
Q psy9056         219 PVKTVAVLGAGLMGAGI-----AHVTVDKGYNTIVKDSFEK  254 (359)
Q Consensus       219 ~~~kI~IIG~G~mG~~i-----A~~l~~~G~~V~l~d~~~~  254 (359)
                      .|++|+|-|=|-+|.+.     |..|++.|++|.++|.|++
T Consensus         1 ~Mr~IaisgKGGVGKTT~a~NLA~~LA~~G~rVLlID~DpQ   41 (289)
T d2afhe1           1 AMRQCAIYGKGGIGKSTTTQNLVAALAEMGKKVMIVGCDPK   41 (289)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEECSS
T ss_pred             CccEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEecCCC
Confidence            37899999988888774     7789999999999999975

>d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: TAT-interacting protein TIP30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.08  E-value=0.27  Score=40.87  Aligned_cols=37  Identities=22%  Similarity=0.297  Sum_probs=32.0

Q ss_pred             CCccEEEEECC-CcchHHHHHHHHHCCC--eeEEecCCHH
Q psy9056         218 TPVKTVAVLGA-GLMGAGIAHVTVDKGY--NTIVKDSFEK  254 (359)
Q Consensus       218 ~~~~kI~IIG~-G~mG~~iA~~l~~~G~--~V~l~d~~~~  254 (359)
                      |.-++|.|.|+ |.+|+.+...|.+.|.  +|++++|++.
T Consensus        12 m~~k~IlItGaTG~iG~~l~~~Ll~~g~~~~v~~~~R~~~   51 (232)
T d2bkaa1          12 MQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKL   51 (232)
T ss_dssp             HTCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCC
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHhCCCCCEEEEEecChh
Confidence            44478999997 9999999999999995  8999998764

>d2a7sa1 c.14.1.4 (A:20-277) Propionyl-CoA carboxylase complex B subunit, PccB {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Propionyl-CoA carboxylase complex B subunit, PccB
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=84.01  E-value=1.9  Score=36.64  Aligned_cols=58  Identities=12%  Similarity=0.111  Sum_probs=39.6

Q ss_pred             CCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHH-------HHHcC
Q psy9056           2 FAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADK-------AKKMG   74 (359)
Q Consensus         2 ~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~e-------A~~~G   74 (359)
                      -+.||+.-....||++|+.++        ...+++.             |+...+.  .+|+.++.+|       +.+.|
T Consensus       171 ~~~gG~a~~~~~~d~~vm~~~--------~a~i~~a-------------GP~vV~~--~~ge~~~~eeLGga~~h~~~sG  227 (258)
T d2a7sa1         171 AAAGGHVYSPALTDFVIMVDQ--------TSQMFIT-------------GPDVIKT--VTGEEVTMEELGGAHTHMAKSG  227 (258)
T ss_dssp             CCBSGGGHHHHHSSEEEEEBT--------TBBCBSS-------------CHHHHHH--HHCCCCCHHHHHBHHHHHHTSC
T ss_pred             CcccHHHHHHHhccceEeecC--------ceEEEcc-------------ChhHHHH--hcCCccChhhccCHhHhhhhcc
Confidence            467899999999999999875        2344442             2222222  3577787664       35679


Q ss_pred             CcceecCC
Q psy9056          75 IVDQLVEP   82 (359)
Q Consensus        75 lv~~~~~~   82 (359)
                      .+|.++++
T Consensus       228 ~~D~v~~d  235 (258)
T d2a7sa1         228 TAHYAASG  235 (258)
T ss_dssp             CCSEEESS
T ss_pred             ccceEeCC
Confidence            99999986

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=83.73  E-value=0.4  Score=40.49  Aligned_cols=30  Identities=17%  Similarity=0.237  Sum_probs=28.6

Q ss_pred             EEEECCCcchHHHHHHHHHCCCeeEEecCC
Q psy9056         223 VAVLGAGLMGAGIAHVTVDKGYNTIVKDSF  252 (359)
Q Consensus       223 I~IIG~G~mG~~iA~~l~~~G~~V~l~d~~  252 (359)
                      +.|||+|.-|...|..+++.|.+|.++|.+
T Consensus         4 viVIG~G~aG~~aA~~aa~~G~~V~liE~~   33 (259)
T d1onfa1           4 LIVIGGGSGGMAAARRAARHNAKVALVEKS   33 (259)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             EEEECCCHHHHHHHHHHHHCCCeEEEEecC
Confidence            789999999999999999999999999975

>d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Polymyxin resistance protein ArnA (PrmI)
species: Escherichia coli [TaxId: 562]

Probab=83.69  E-value=0.44  Score=41.63  Aligned_cols=33  Identities=18%  Similarity=0.265  Sum_probs=29.2

Q ss_pred             EEEEECC-CcchHHHHHHHHHCCC-eeEEecCCHH
Q psy9056         222 TVAVLGA-GLMGAGIAHVTVDKGY-NTIVKDSFEK  254 (359)
Q Consensus       222 kI~IIG~-G~mG~~iA~~l~~~G~-~V~l~d~~~~  254 (359)
                      ||-|.|+ |.+|+.++..|++.|+ +|+++|+...
T Consensus         2 KILITG~tGfiG~~l~~~Ll~~g~~~V~~ld~~~~   36 (342)
T d2blla1           2 RVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSD   36 (342)
T ss_dssp             EEEEETCSSHHHHHHHHHHHHSTTCEEEEEESCCG
T ss_pred             EEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCCc
Confidence            7999996 9999999999999995 8999988654

>d1yo6a1 c.2.1.2 (A:1-250) Putative carbonyl reductase sniffer {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative carbonyl reductase sniffer
species: Caenorhabditis elegans [TaxId: 6239]

Probab=83.68  E-value=1.8  Score=36.10  Aligned_cols=40  Identities=20%  Similarity=0.199  Sum_probs=32.2

Q ss_pred             CccEEEEECC-CcchHHHHHHHHHCCC--eeEEecCCHHHHHH
Q psy9056         219 PVKTVAVLGA-GLMGAGIAHVTVDKGY--NTIVKDSFEKGLAR  258 (359)
Q Consensus       219 ~~~kI~IIG~-G~mG~~iA~~l~~~G~--~V~l~d~~~~~l~~  258 (359)
                      .-|+|-|-|+ +-+|.++|..|++.|.  .|++..|+.+++++
T Consensus         2 ~~KtilITGassGIG~a~a~~la~~G~~~~Vi~~~R~~~~~~~   44 (250)
T d1yo6a1           2 SPGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKATE   44 (250)
T ss_dssp             CCSEEEESSCSSHHHHHHHHHHHTCTTCCEEEEEESSGGGCHH
T ss_pred             cCCEEEEeCCCCHHHHHHHHHHHHCCCCCEEEEEeCCHHHHHH
Confidence            3467878786 8899999999999995  68888999876554

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=83.51  E-value=3.3  Score=33.02  Aligned_cols=93  Identities=22%  Similarity=0.194  Sum_probs=57.6

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcCCC---
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPF---  297 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l---  297 (359)
                      .+|-=||+|. | .++..+++.|.+|+.+|.+++.++.+++...+.       +.          .......|...+   
T Consensus        39 ~~ILDiGcG~-G-~~~~~la~~~~~v~giD~S~~~i~~ak~~~~~~-------~~----------~~~~~~~d~~~l~~~   99 (226)
T d1ve3a1          39 GKVLDLACGV-G-GFSFLLEDYGFEVVGVDISEDMIRKAREYAKSR-------ES----------NVEFIVGDARKLSFE   99 (226)
T ss_dssp             CEEEEETCTT-S-HHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT-------TC----------CCEEEECCTTSCCSC
T ss_pred             CEEEEECCCc-c-hhhhhHhhhhcccccccccccchhhhhhhhccc-------cc----------ccccccccccccccc
Confidence            5899999998 3 356678899999999999999888876543321       10          001112222221   


Q ss_pred             -CCccEEEEcc-cC--CHHHHHHHHHHHHHhCCCCcEEE
Q psy9056         298 -KNADMVIEAV-FE--DINIKHQVIKEIEAVVPPHCVVA  332 (359)
Q Consensus       298 -~~aD~Vi~av-p~--~~~~k~~v~~~l~~~~~~~~ii~  332 (359)
                       ..-|+|+..- -.  +..-...+++++...++|+..++
T Consensus       100 ~~~fD~I~~~~~l~~~~~~d~~~~l~~i~~~LkpgG~li  138 (226)
T d1ve3a1         100 DKTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFI  138 (226)
T ss_dssp             TTCEEEEEEESCGGGCCHHHHHHHHHHHHHHEEEEEEEE
T ss_pred             CcCceEEEEecchhhCChhHHHHHHHHHHHHcCcCcEEE
Confidence             3457766422 11  11224568899999999987543

>d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Putative spermidine synthetase PF0127 (SpeE)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=83.49  E-value=0.53  Score=40.61  Aligned_cols=103  Identities=14%  Similarity=0.100  Sum_probs=59.2

Q ss_pred             cEEEEECCCcchHHHHHHHHHCC-CeeEEecCCHHHHHHHHHHHHHh---HHHHHhhccCChHHHHhhhccccc-ccCc-
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKG-YNTIVKDSFEKGLARGLGQIKTG---LDGAVKRKKMSALDRDRYLASLVG-TLSY-  294 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G-~~V~l~d~~~~~l~~~~~~~~~~---l~~~~~~~~~~~~~~~~~~~~i~~-~~~~-  294 (359)
                      ++|.|||+|.-+..  ..+++.+ -+|.++|.|++.++-+++.+...   ++.... . .        -.++++ ..|. 
T Consensus        74 ~~vLiiG~G~G~~~--~~~l~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~-~-~--------d~rv~i~~~Da~  141 (276)
T d1mjfa_          74 KRVLVIGGGDGGTV--REVLQHDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLN-G-K--------HEKAKLTIGDGF  141 (276)
T ss_dssp             CEEEEEECTTSHHH--HHHTTSCCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHT-T-C--------CSSEEEEESCHH
T ss_pred             ceEEEecCCchHHH--HHHHHhCCceEEEecCCHHHHHHHHHhhhhccchhhhhhc-c-C--------CCCceEEEChHH
Confidence            69999999985443  4444444 37999999999988776543210   000000 0 0        012221 1111 


Q ss_pred             ---CCCCCccEEEEcccCCHHH-----HHHHHHHHHHhCCCCcEEEEcC
Q psy9056         295 ---DPFKNADMVIEAVFEDINI-----KHQVIKEIEAVVPPHCVVATNT  335 (359)
Q Consensus       295 ---~~l~~aD~Vi~avp~~~~~-----k~~v~~~l~~~~~~~~ii~s~t  335 (359)
                         ..-+.-|+||.-.+.....     .++.++.+.+.++++.+++.++
T Consensus       142 ~~l~~~~~yDvIi~D~~~~~~~~~~L~t~eF~~~~~~~L~~~Gv~v~q~  190 (276)
T d1mjfa_         142 EFIKNNRGFDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQA  190 (276)
T ss_dssp             HHHHHCCCEEEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred             HHHhccCCCCEEEEeCCCCCCCcccccCHHHHHhhHhhcCCCceEEEec
Confidence               1125578888755443221     2467889999999999887654

>d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Escherichia coli [TaxId: 562]

Probab=83.45  E-value=0.44  Score=42.23  Aligned_cols=33  Identities=21%  Similarity=0.311  Sum_probs=26.8

Q ss_pred             EEEEEC-CCcchHHHHHHHHHCCCeeEEecCCHH
Q psy9056         222 TVAVLG-AGLMGAGIAHVTVDKGYNTIVKDSFEK  254 (359)
Q Consensus       222 kI~IIG-~G~mG~~iA~~l~~~G~~V~l~d~~~~  254 (359)
                      +|-|.| +|.+|+.++..|.+.|++|+++|+...
T Consensus         3 ~vLITGatGfiGs~lv~~Ll~~g~~V~~~~r~~~   36 (357)
T d1db3a_           3 VALITGVTGQDGSYLAEFLLEKGYEVHGIKRRAS   36 (357)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEECC---
T ss_pred             EEEEeCCCcHHHHHHHHHHHHCcCEEEEEECCCc
Confidence            344778 599999999999999999999998653

>d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Transcriptional repressor Rex, C-terminal domain
domain: Transcriptional repressor Rex, C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=83.16  E-value=0.13  Score=39.19  Aligned_cols=77  Identities=12%  Similarity=0.060  Sum_probs=46.8

Q ss_pred             cEEEEECCCcchHHHHHHHHH-CCCeeEEe-cCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhccccc--ccCcC-
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVD-KGYNTIVK-DSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVG--TLSYD-  295 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~-~G~~V~l~-d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~--~~~~~-  295 (359)
                      .+|.|+|+|.+|..++..+.. .||+++.+ |-++++.-.                         ....+.+  .++++ 
T Consensus         4 ~~v~I~GaG~~G~~l~~~l~~~~~~~iv~fiDdd~~k~G~-------------------------~I~Gi~V~~~~~l~~   58 (126)
T d2dt5a2           4 WGLCIVGMGRLGSALADYPGFGESFELRGFFDVDPEKVGR-------------------------PVRGGVIEHVDLLPQ   58 (126)
T ss_dssp             EEEEEECCSHHHHHHHHCSCCCSSEEEEEEEESCTTTTTC-------------------------EETTEEEEEGGGHHH
T ss_pred             ceEEEEcCCHHHHHHHHhHhhcCCcEEEEEEeCchHhcCC-------------------------EECCEEEecHHHHHH
Confidence            389999999999999876543 46765554 877653111                         0011111  11111 


Q ss_pred             -CCCCccEEEEcccCCHHHHHHHHHHHHHh
Q psy9056         296 -PFKNADMVIEAVFEDINIKHQVIKEIEAV  324 (359)
Q Consensus       296 -~l~~aD~Vi~avp~~~~~k~~v~~~l~~~  324 (359)
                       .-...++++.++|...  .++++..+.++
T Consensus        59 ~~~~~i~iai~~i~~~~--~~~I~d~l~~~   86 (126)
T d2dt5a2          59 RVPGRIEIALLTVPREA--AQKAADLLVAA   86 (126)
T ss_dssp             HSTTTCCEEEECSCHHH--HHHHHHHHHHH
T ss_pred             HHhhcccEEEEeCCHHH--HHHHHHHHHHc
Confidence             1245788999997543  66788877665

>d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain
species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]

Probab=83.15  E-value=0.41  Score=42.64  Aligned_cols=30  Identities=20%  Similarity=0.215  Sum_probs=27.9

Q ss_pred             EEEECCCcchHHHHHHHHHCCCeeEEecCC
Q psy9056         223 VAVLGAGLMGAGIAHVTVDKGYNTIVKDSF  252 (359)
Q Consensus       223 I~IIG~G~mG~~iA~~l~~~G~~V~l~d~~  252 (359)
                      +-|||+|.-|..+|..|+++|++|.++++=
T Consensus         5 ~IIVGsG~aG~v~A~rLae~g~~VlvLEaG   34 (360)
T d1kdga1           5 YIIVGAGPGGIIAADRLSEAGKKVLLLERG   34 (360)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             EEEECcCHHHHHHHHHHhhCCCeEEEEEcc
Confidence            679999999999999999999999999865

>d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=82.69  E-value=0.48  Score=41.64  Aligned_cols=30  Identities=30%  Similarity=0.610  Sum_probs=26.8

Q ss_pred             EEEEECC-CcchHHHHHHHHHCCCeeEEecC
Q psy9056         222 TVAVLGA-GLMGAGIAHVTVDKGYNTIVKDS  251 (359)
Q Consensus       222 kI~IIG~-G~mG~~iA~~l~~~G~~V~l~d~  251 (359)
                      .|-|.|+ |.+|+.++..|+++|++|+++|+
T Consensus         3 ~ILVTGatGfIG~~lv~~Ll~~g~~V~~~d~   33 (347)
T d1z45a2           3 IVLVTGGAGYIGSHTVVELIENGYDCVVADN   33 (347)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             EEEEeCCCcHHHHHHHHHHHHCcCeEEEEEC
Confidence            4667786 99999999999999999999975

>d2f9ya1 c.14.1.4 (A:4-319) Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha, AccA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha, AccA
species: Escherichia coli [TaxId: 562]

Probab=82.58  E-value=0.37  Score=42.53  Aligned_cols=66  Identities=8%  Similarity=0.081  Sum_probs=46.7

Q ss_pred             chHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceecCC
Q psy9056           5 PSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEP   82 (359)
Q Consensus         5 GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~~~   82 (359)
                      |||..-...+|.+.|.++  +.++.      +.|.++.+.+|...--...+.+    ...+++++.+++|+||+++|.
T Consensus       202 ~gga~a~~~~d~v~m~~~--a~~sv------ispEg~AsILwkd~~~a~eaAe----alklta~dL~~lgiIDeII~E  267 (316)
T d2f9ya1         202 SGGALAIGVGDKVNMLQY--STYSV------ISPEGCASILWKSADKAPLAAE----AMGIIRPRLKELKLIDSIIPE  267 (316)
T ss_dssp             HHHHHTTCCCSEEEECTT--CEEES------SCHHHHHHHHSSCSTTHHHHHH----HHTCSHHHHHTTTSCSCCCCC
T ss_pred             chhhhhhhhhhHHHHHhh--hHHhh------ccchhhhhHhhccchhhcchHH----HHhhhhHHHHHcCchhhcccC
Confidence            566666677999999999  99983      2566665555543322223333    345889999999999999975

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=82.54  E-value=4  Score=33.42  Aligned_cols=92  Identities=13%  Similarity=0.070  Sum_probs=60.4

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhccccc-ccCc---CC
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVG-TLSY---DP  296 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~-~~~~---~~  296 (359)
                      ++|-=||+|. | .++..+++.|.+|+.+|.+++-++.+++....       .+.           ++.+ ..|.   +.
T Consensus        39 ~~vLDiGCG~-G-~~~~~l~~~g~~v~GvD~S~~ml~~A~~~~~~-------~~~-----------~v~~~~~d~~~~~~   98 (246)
T d1y8ca_          39 DDYLDLACGT-G-NLTENLCPKFKNTWAVDLSQEMLSEAENKFRS-------QGL-----------KPRLACQDISNLNI   98 (246)
T ss_dssp             TEEEEETCTT-S-TTHHHHGGGSSEEEEECSCHHHHHHHHHHHHH-------TTC-----------CCEEECCCGGGCCC
T ss_pred             CeEEEEeCcC-C-HHHHHHHHhCCccEeeccchhhhhhccccccc-------cCc-----------cceeeccchhhhcc
Confidence            5789999985 3 36778888999999999999988877654321       110           1111 2222   22


Q ss_pred             CCCccEEEEcc-----cCCHHHHHHHHHHHHHhCCCCcEEE
Q psy9056         297 FKNADMVIEAV-----FEDINIKHQVIKEIEAVVPPHCVVA  332 (359)
Q Consensus       297 l~~aD~Vi~av-----p~~~~~k~~v~~~l~~~~~~~~ii~  332 (359)
                      -..-|+|+...     -.+.+-...+++.+.+.++|+-+++
T Consensus        99 ~~~fD~i~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~~i  139 (246)
T d1y8ca_          99 NRKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFI  139 (246)
T ss_dssp             SCCEEEEEECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEE
T ss_pred             cccccccceeeeeeeccCCHHHHHHHHHHHHHhCCCCeEEE
Confidence            24469887521     1244456678899999999887654

>d1pvva2 c.78.1.1 (A:151-313) Ornithine transcarbamoylase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=82.18  E-value=3.9  Score=31.69  Aligned_cols=98  Identities=13%  Similarity=0.125  Sum_probs=59.7

Q ss_pred             cEEEEECC-CcchHHHHHHHHHCCCeeEEecC-----CHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc
Q psy9056         221 KTVAVLGA-GLMGAGIAHVTVDKGYNTIVKDS-----FEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY  294 (359)
Q Consensus       221 ~kI~IIG~-G~mG~~iA~~l~~~G~~V~l~d~-----~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~  294 (359)
                      .+|++||- .++..+++..+.+-|.+|+++.+     .++.++......                  ......+..+++.
T Consensus         5 l~Ia~VGD~~nv~~Sli~~l~~~g~~v~~~~P~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~d~   66 (163)
T d1pvva2           5 VKVVYVGDGNNVAHSLMIAGTKLGADVVVATPEGYEPDEKVIKWAEQNA------------------AESGGSFELLHDP   66 (163)
T ss_dssp             CEEEEESCCCHHHHHHHHHHHHTTCEEEEECCTTCCCCHHHHHHHHHHH------------------HHHTCEEEEESCH
T ss_pred             CEEEEECCCcHHHHHHHHHHHHcCCeEEEecccccCCChHHHHHHHHhh------------------hcccceEEEecCH
Confidence            58999997 45667888888889999999854     333333222110                  0111245566666


Q ss_pred             -CCCCCccEEEEcc------cCCHHHHHHHH------HHHHHhCCCCcEEEEcCC
Q psy9056         295 -DPFKNADMVIEAV------FEDINIKHQVI------KEIEAVVPPHCVVATNTS  336 (359)
Q Consensus       295 -~~l~~aD~Vi~av------p~~~~~k~~v~------~~l~~~~~~~~ii~s~ts  336 (359)
                       +++.++|+|..-.      .++.+.....+      .++.+.++++++|.-...
T Consensus        67 ~ea~~~adviy~~~~~~~~~~~~~~~~~~~~~~y~v~~~~l~~ak~~~iimHplP  121 (163)
T d1pvva2          67 VKAVKDADVIYTDVWASMGQEAEAEERRKIFRPFQVNKDLVKHAKPDYMFMHCLP  121 (163)
T ss_dssp             HHHTTTCSEEEECCCCCSSTTSSSSHHHHHHGGGCBCHHHHHTSCTTCEEEECSC
T ss_pred             HHHhhhccEEeecceeecccchhhHHHHHHhhhhhHHHHHHHhhCCCeEEecCCc
Confidence             6799999888532      12222222333      456677888998875543

>d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein PA4017
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=82.09  E-value=0.42  Score=38.83  Aligned_cols=32  Identities=25%  Similarity=0.313  Sum_probs=27.3

Q ss_pred             cEEEEECC-CcchHHHHHHHHHCCC--eeEEecCC
Q psy9056         221 KTVAVLGA-GLMGAGIAHVTVDKGY--NTIVKDSF  252 (359)
Q Consensus       221 ~kI~IIG~-G~mG~~iA~~l~~~G~--~V~l~d~~  252 (359)
                      |||.|.|+ |.+|..++..|.+.|+  +|+...++
T Consensus         3 KkIlItGatG~iG~~lv~~L~~~~~~~~v~~~~r~   37 (212)
T d2a35a1           3 KRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARK   37 (212)
T ss_dssp             CEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSS
T ss_pred             CEEEEECCCcHHHHHHHHHHHhCCCeEEEEEEeCC
Confidence            79999998 9999999999999998  45555554

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein MJ0882
domain: Hypothetical protein MJ0882
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=82.06  E-value=3.5  Score=32.67  Aligned_cols=96  Identities=13%  Similarity=0.123  Sum_probs=60.2

Q ss_pred             CccEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhccccc-ccCc-CC
Q psy9056         219 PVKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVG-TLSY-DP  296 (359)
Q Consensus       219 ~~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~-~~~~-~~  296 (359)
                      +-++|.=||+|.=..  +..+++.+.+|+++|.|+..++.+...++..        .+..       .++.+ ..|. +.
T Consensus        52 ~~~~VLDiGcG~G~~--~~~la~~~~~v~~iD~s~~~i~~a~~n~~~~--------~l~~-------~~i~~~~~d~~~~  114 (194)
T d1dusa_          52 KDDDILDLGCGYGVI--GIALADEVKSTTMADINRRAIKLAKENIKLN--------NLDN-------YDIRVVHSDLYEN  114 (194)
T ss_dssp             TTCEEEEETCTTSHH--HHHHGGGSSEEEEEESCHHHHHHHHHHHHHT--------TCTT-------SCEEEEECSTTTT
T ss_pred             CCCeEEEEeecCChh--HHHHHhhccccceeeeccccchhHHHHHHHh--------CCcc-------ceEEEEEcchhhh
Confidence            346899999988443  4566778889999999999888776543311        1100       12222 1222 33


Q ss_pred             C--CCccEEEEcccC--CHHHHHHHHHHHHHhCCCCcEE
Q psy9056         297 F--KNADMVIEAVFE--DINIKHQVIKEIEAVVPPHCVV  331 (359)
Q Consensus       297 l--~~aD~Vi~avp~--~~~~k~~v~~~l~~~~~~~~ii  331 (359)
                      +  ...|+|+...|-  ..+....+++.+.+.++++.++
T Consensus       115 ~~~~~fD~Ii~~~p~~~~~~~~~~~l~~~~~~LkpgG~l  153 (194)
T d1dusa_         115 VKDRKYNKIITNPPIRAGKEVLHRIIEEGKELLKDNGEI  153 (194)
T ss_dssp             CTTSCEEEEEECCCSTTCHHHHHHHHHHHHHHEEEEEEE
T ss_pred             hccCCceEEEEcccEEecchhhhhHHHHHHHhcCcCcEE
Confidence            3  357888865542  3344567788888888888644

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=81.65  E-value=1.2  Score=36.17  Aligned_cols=93  Identities=12%  Similarity=-0.003  Sum_probs=56.4

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhccccc-ccCcCCC--
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVG-TLSYDPF--  297 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~l--  297 (359)
                      .+|-=||+|. | .++..+++.|.+|+.+|.+++.++.+.+.+...       +          .+++.+ ..|.+.+  
T Consensus        17 ~rVLDiGcG~-G-~~~~~l~~~~~~v~gvD~s~~~i~~A~~~~~~~-------~----------~~~i~~~~~d~~~l~~   77 (231)
T d1vl5a_          17 EEVLDVATGG-G-HVANAFAPFVKKVVAFDLTEDILKVARAFIEGN-------G----------HQQVEYVQGDAEQMPF   77 (231)
T ss_dssp             CEEEEETCTT-C-HHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHT-------T----------CCSEEEEECCC-CCCS
T ss_pred             CEEEEecccC-c-HHHHHHHHhCCEEEEEECCHHHHhhhhhccccc-------c----------cccccccccccccccc
Confidence            5899999995 4 334667888999999999999888765543211       1          123332 2233222  


Q ss_pred             --CCccEEEEc-ccCCHHHHHHHHHHHHHhCCCCcEEE
Q psy9056         298 --KNADMVIEA-VFEDINIKHQVIKEIEAVVPPHCVVA  332 (359)
Q Consensus       298 --~~aD~Vi~a-vp~~~~~k~~v~~~l~~~~~~~~ii~  332 (359)
                        ...|+|+.. +.+...-...+++++.+.++|+..++
T Consensus        78 ~~~~fD~v~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~  115 (231)
T d1vl5a_          78 TDERFHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLL  115 (231)
T ss_dssp             CTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEE
T ss_pred             cccccccccccccccccCCHHHHHHHHHHhcCCCcEEE
Confidence              346888743 21111113366888888888887443

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=81.61  E-value=0.46  Score=40.95  Aligned_cols=102  Identities=18%  Similarity=0.164  Sum_probs=59.5

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhH-HHHHhhccCChHHHHhhhccccc---ccCcCC
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGL-DGAVKRKKMSALDRDRYLASLVG---TLSYDP  296 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~i~~---~~~~~~  296 (359)
                      ++|-=||+|. |. ++..|++.|++|+.+|.+++-++.+.+.....- ........         ...+.+   ..+...
T Consensus        58 ~~vLD~GcG~-G~-~~~~la~~g~~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~  126 (292)
T d1xvaa_          58 HRVLDVACGT-GV-DSIMLVEEGFSVTSVDASDKMLKYALKERWNRRKEPAFDKWV---------IEEANWLTLDKDVPA  126 (292)
T ss_dssp             CEEEESSCTT-SH-HHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCE---------EEECCGGGHHHHSCC
T ss_pred             CEEEEecCCC-cH-HHHHHHHcCCeeeeccCchHHHHHHHHHHHhcccccccceee---------eeeccccccccccCC
Confidence            5888899987 33 566678899999999999999888766443211 00000000         000110   011112


Q ss_pred             CCCccEEEEc------ccC---CHHHHHHHHHHHHHhCCCCcEEEE
Q psy9056         297 FKNADMVIEA------VFE---DINIKHQVIKEIEAVVPPHCVVAT  333 (359)
Q Consensus       297 l~~aD~Vi~a------vp~---~~~~k~~v~~~l~~~~~~~~ii~s  333 (359)
                      -...|+|+..      +|.   +.+-.+.+++++...++|+.+++.
T Consensus       127 ~~~fd~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~  172 (292)
T d1xvaa_         127 GDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVI  172 (292)
T ss_dssp             TTCEEEEEECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEEEEEE
T ss_pred             CCCceEEEEecCchhhcCCcccChHHHHHHHHHHHHHcCcCcEEEE
Confidence            3456777642      121   233456788999999999886653

>d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.58  E-value=0.79  Score=39.71  Aligned_cols=101  Identities=11%  Similarity=0.064  Sum_probs=59.9

Q ss_pred             cEEEEECCCcchHHHHHHHHHC--CCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhccccc-ccCc---
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDK--GYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVG-TLSY---  294 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~--G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~-~~~~---  294 (359)
                      ++|-|||.|.-+  ++..+.+.  ..+|.++|.+++.++-+++.+...- ...+.            .++++ ..|.   
T Consensus        80 k~vLiiGgG~G~--~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~-~~~~d------------~rv~i~~~Da~~~  144 (285)
T d2o07a1          80 RKVLIIGGGDGG--VLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMA-IGYSS------------SKLTLHVGDGFEF  144 (285)
T ss_dssp             CEEEEEECTTSH--HHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHH-GGGGC------------TTEEEEESCHHHH
T ss_pred             CeEEEeCCCchH--HHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhc-cccCC------------CCceEEEccHHHH
Confidence            799999999743  45555554  3589999999999888776543211 11111            12221 1111   


Q ss_pred             --CCCCCccEEEEcccCCHH-----HHHHHHHHHHHhCCCCcEEEEcCC
Q psy9056         295 --DPFKNADMVIEAVFEDIN-----IKHQVIKEIEAVVPPHCVVATNTS  336 (359)
Q Consensus       295 --~~l~~aD~Vi~avp~~~~-----~k~~v~~~l~~~~~~~~ii~s~ts  336 (359)
                        +.-+.-|+||.-.+++..     ..++.++.+.+.++++.+++..+.
T Consensus       145 l~~~~~~yDvIi~D~~~p~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~  193 (285)
T d2o07a1         145 MKQNQDAFDVIITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQGE  193 (285)
T ss_dssp             HHTCSSCEEEEEEECC-----------CHHHHHHHHHEEEEEEEEEEEE
T ss_pred             HhcCCCCCCEEEEcCCCCCCcccccccHHHHHHHHHhcCCCCeEEEecc
Confidence              122456988876544322     233567889999999998876543

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=81.01  E-value=2.6  Score=38.14  Aligned_cols=107  Identities=11%  Similarity=0.099  Sum_probs=60.6

Q ss_pred             cEEEEECCCcchHHHHHHHHHCCC-eeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-----
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDKGY-NTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-----  294 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~G~-~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-----  294 (359)
                      .+|-=||+|. |..........|. +|+.+|.++..++.+....+..-......+.- ...     ..+....+.     
T Consensus       218 d~fLDLGCG~-G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~-~~~-----~~~~~~~~f~~~~~  290 (406)
T d1u2za_         218 DTFMDLGSGV-GNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMR-LNN-----VEFSLKKSFVDNNR  290 (406)
T ss_dssp             CEEEEESCTT-SHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBC-CCC-----EEEEESSCSTTCHH
T ss_pred             CEEEeCCCCC-cHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccc-ccc-----ceeeeeechhhccc
Confidence            4677789987 4444444445565 79999999999888776544322111111100 000     001111111     


Q ss_pred             --CCCCCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEc
Q psy9056         295 --DPFKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATN  334 (359)
Q Consensus       295 --~~l~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~  334 (359)
                        +.+..+|+|+........-....+.++...++|++.|++.
T Consensus       291 ~d~~~~~adVV~inn~~f~~~l~~~L~ei~r~LKPGGrIVs~  332 (406)
T d1u2za_         291 VAELIPQCDVILVNNFLFDEDLNKKVEKILQTAKVGCKIISL  332 (406)
T ss_dssp             HHHHGGGCSEEEECCTTCCHHHHHHHHHHHTTCCTTCEEEES
T ss_pred             cccccccceEEEEecccCchHHHHHHHHHHHhcCCCcEEEEe
Confidence              2357788888643222233456778888899999977764

>d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=80.69  E-value=0.53  Score=41.45  Aligned_cols=102  Identities=10%  Similarity=0.074  Sum_probs=58.4

Q ss_pred             cEEEEECCCcchHHHHHHHHHC-C-CeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhccccc-ccCc---
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDK-G-YNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVG-TLSY---  294 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~-G-~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~-~~~~---  294 (359)
                      ++|-|||.|.-|  ++..+++. + -+|.+++.|++.++.+.+.+... ......            .++++ ..|.   
T Consensus       108 k~VLIiGgG~G~--~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~-~~~~~d------------prv~i~i~Da~~~  172 (312)
T d2b2ca1         108 KRVLIIGGGDGG--ILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGM-SCGFSH------------PKLDLFCGDGFEF  172 (312)
T ss_dssp             CEEEEESCTTSH--HHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTT-SGGGGC------------TTEEEECSCHHHH
T ss_pred             CeEEEeCCCchH--HHHHHHHcCCcceEEEEcccHHHHHHHHhhchhh-ccccCC------------CCeEEEEchHHHH
Confidence            699999999744  44455554 3 48999999999988776543211 000000            11211 1111   


Q ss_pred             --CCCCCccEEEEcccCCHH-----HHHHHHHHHHHhCCCCcEEEEcCCC
Q psy9056         295 --DPFKNADMVIEAVFEDIN-----IKHQVIKEIEAVVPPHCVVATNTSA  337 (359)
Q Consensus       295 --~~l~~aD~Vi~avp~~~~-----~k~~v~~~l~~~~~~~~ii~s~ts~  337 (359)
                        +.-+.-|+||.-.++...     .-++.++.+.+.++++.|+++.+.+
T Consensus       173 l~~~~~~yDvII~D~~dp~~~~~~L~t~eFy~~~~~~L~~~Gi~v~q~~s  222 (312)
T d2b2ca1         173 LKNHKNEFDVIITDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQGES  222 (312)
T ss_dssp             HHHCTTCEEEEEECCC-------------HHHHHHHHEEEEEEEEEECCC
T ss_pred             HHhCCCCCCEEEEcCCCCCCcchhhhhHHHHHHHHhhcCCCcEEEEecCC
Confidence              112456888875543322     2446778899999999999876543

>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=80.65  E-value=0.25  Score=43.69  Aligned_cols=101  Identities=15%  Similarity=0.093  Sum_probs=59.3

Q ss_pred             cEEEEECCCcchHHHHHHHHHC--CCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhccccc-ccCc-C-
Q psy9056         221 KTVAVLGAGLMGAGIAHVTVDK--GYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVG-TLSY-D-  295 (359)
Q Consensus       221 ~kI~IIG~G~mG~~iA~~l~~~--G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~-~~~~-~-  295 (359)
                      ++|.|||+|.-+  ++..+++.  ..+|.++|.+++.++.+.+.+...-....+.            .++++ ..|. + 
T Consensus        79 k~VLiiG~G~G~--~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d------------~rv~i~~~Da~~~  144 (312)
T d1uira_          79 KRVLIVGGGEGA--TLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDD------------PRAVLVIDDARAY  144 (312)
T ss_dssp             CEEEEEECTTSH--HHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGC------------TTEEEEESCHHHH
T ss_pred             ceEEEeCCCchH--HHHHHHhcCCcceEEEecCCHHHHHHHHhcCcccccCccCC------------CceEEEEchHHHH
Confidence            799999999643  44444444  3489999999999887766542111000010            11111 1111 1 


Q ss_pred             ---CCCCccEEEEcccCC-----HH---HHHHHHHHHHHhCCCCcEEEEcC
Q psy9056         296 ---PFKNADMVIEAVFED-----IN---IKHQVIKEIEAVVPPHCVVATNT  335 (359)
Q Consensus       296 ---~l~~aD~Vi~avp~~-----~~---~k~~v~~~l~~~~~~~~ii~s~t  335 (359)
                         .-..-|+||.-.++.     ..   .-++.++.+.+.++++.|++..+
T Consensus       145 l~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gvlv~~~  195 (312)
T d1uira_         145 LERTEERYDVVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQT  195 (312)
T ss_dssp             HHHCCCCEEEEEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEE
T ss_pred             hhhcCCcccEEEEeCCCcccccchhhhhhhHHHHHHHHHhcCCCceEEEec
Confidence               124578888655321     10   12478889999999999887543

>d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=80.40  E-value=2.1  Score=37.05  Aligned_cols=32  Identities=25%  Similarity=0.162  Sum_probs=28.1

Q ss_pred             CccEEEEECCCcchHHHHHHHHHCCCeeEEec
Q psy9056         219 PVKTVAVLGAGLMGAGIAHVTVDKGYNTIVKD  250 (359)
Q Consensus       219 ~~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d  250 (359)
                      +=++|.|-|.|++|...|..+.+.|..|+.++
T Consensus        35 ~gktvaIqGfGnVG~~~A~~L~e~Gakvv~vs   66 (293)
T d1hwxa1          35 GDKTFAVQGFGNVGLHSMRYLHRFGAKCVAVG   66 (293)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEE
Confidence            33699999999999999999999999877653

>d1zmta1 c.2.1.2 (A:2-253) Halohydrin dehalogenase HheC {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Halohydrin dehalogenase HheC
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=80.22  E-value=0.83  Score=38.47  Aligned_cols=39  Identities=18%  Similarity=0.042  Sum_probs=32.4

Q ss_pred             EEEECC-CcchHHHHHHHHHCCCeeEEecCCHHHHHHHHH
Q psy9056         223 VAVLGA-GLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLG  261 (359)
Q Consensus       223 I~IIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~  261 (359)
                      +-|-|+ +-+|.++|..|++.|++|++.|++.+.+++...
T Consensus         3 AlVTGas~GiG~aiA~~la~~Ga~V~i~~r~~~~~~~~~~   42 (252)
T d1zmta1           3 AIVTNVKHFGGMGSALRLSEAGHTVACHDESFKQKDELEA   42 (252)
T ss_dssp             EEESSTTSTTHHHHHHHHHHTTCEEEECCGGGGSHHHHHH
T ss_pred             EEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHh
Confidence            445675 669999999999999999999999888776543

>d1dxha2 c.78.1.1 (A:151-335) Ornithine transcarbamoylase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=80.15  E-value=2  Score=34.29  Aligned_cols=97  Identities=16%  Similarity=0.110  Sum_probs=59.5

Q ss_pred             cEEEEECC--CcchHHHHHHHHHCCCeeEEecCC-----HHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccC
Q psy9056         221 KTVAVLGA--GLMGAGIAHVTVDKGYNTIVKDSF-----EKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLS  293 (359)
Q Consensus       221 ~kI~IIG~--G~mG~~iA~~l~~~G~~V~l~d~~-----~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~  293 (359)
                      -||++||=  -++..+++..+++.|.+|++..+.     ++.++.+.....       .           .-..+.++++
T Consensus         6 lkia~vGD~~nnV~~Sli~~~~~~G~~l~l~~P~~~~~~~~~~~~~~~~~~-------~-----------~~~~~~~~~d   67 (185)
T d1dxha2           6 ISYAYLGDARNNMGNSLLLIGAKLGMDVRIAAPKALWPHDEFVAQCKKFAE-------E-----------SGAKLTLTED   67 (185)
T ss_dssp             CEEEEESCCSSHHHHHHHHHHHHTTCEEEEECCGGGSCCHHHHHHHHHHHH-------H-----------HTCEEEEESC
T ss_pred             CEEEEEcCCcchHHHHHHHHHHHcCCEEEEEccHHHHhhhHHHHHHHHHhh-------c-----------cCCeEEEEeC
Confidence            48999995  478999999999999999999763     333333222111       1           1124666777


Q ss_pred             c-CCCCCccEEEEcccC--------CHHHHHHHH------HHHHHhCCCCcEEEEcC
Q psy9056         294 Y-DPFKNADMVIEAVFE--------DINIKHQVI------KEIEAVVPPHCVVATNT  335 (359)
Q Consensus       294 ~-~~l~~aD~Vi~avp~--------~~~~k~~v~------~~l~~~~~~~~ii~s~t  335 (359)
                      . ++++++|+|.--.-.        .....+...      ..+...++++.+|.-+-
T Consensus        68 ~~eai~~aDvVyt~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ak~~~i~MH~L  124 (185)
T d1dxha2          68 PKEAVKGVDFVHTDVWVSMGEPVEAWGERIKELLPYQVNMEIMKATGNPRAKFMHCL  124 (185)
T ss_dssp             HHHHTTTCSEEEECCCSCSSSCGGGCHHHHHHHGGGCBCHHHHHTTCCSSCEEEECS
T ss_pred             hhhccccccEEEeehhhhhhhhhhhHHHHHHHhhhheeccHHHHhhcCCCEEEEcCC
Confidence            7 679999998864421        111111111      33555677888886443

>d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=80.15  E-value=0.87  Score=38.90  Aligned_cols=37  Identities=16%  Similarity=0.080  Sum_probs=31.4

Q ss_pred             cEEEEECCC---cchHHHHHHHHHCCCeeEEecCCHHHHH
Q psy9056         221 KTVAVLGAG---LMGAGIAHVTVDKGYNTIVKDSFEKGLA  257 (359)
Q Consensus       221 ~kI~IIG~G---~mG~~iA~~l~~~G~~V~l~d~~~~~l~  257 (359)
                      |++-|-|++   -+|.++|..|++.|.+|++.++++....
T Consensus         9 K~alVTGass~~GIG~aiA~~la~~Ga~Vvi~~~~~~~~~   48 (297)
T d1d7oa_           9 KRAFIAGIADDNGYGWAVAKSLAAAGAEILVGTWVPALNI   48 (297)
T ss_dssp             CEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEEEHHHHHH
T ss_pred             CEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCchhhhh
Confidence            677788975   4999999999999999999998876543