Psyllid ID: psy907

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470--
MTPSEFTGYPHASLINVILGITLALVIHPGNPEVKFNAGKAPAIKQINIMDGFLDMGRNLLPDNIFQAAFQQTATTYIEDSSANATSAVKAMKRSIGYRDGTNTLGVIFFSLVFGSVLGTLPGDKKQSVIDFFQTVYETLLQMLLGTICSANATSAVKAMKRNIGYRDGTNTLGVIFFSLVFGSVLGTLPGDKKQSVIDFFQTVYETLLQMLLGTIWFTPIGVGSVICGKIISIANIGLALHQLSLFILCTVGGFLIYQLIISQLIYFIIIRKNPYEYYYKFSSAIITAFATASKSASLPITFRVMDDVAKMNPRISRFILPIGTINMDGSALYLPCAVIFLAQINNIYLGFGEIFTIGLACLFTSFSSAAIPSAAIVLVVMLCSTINAPIDDVTLLFAVDWFVDRFRTPNNLLGDCYAVAVVEHLSQKELNEDLEDGHTNKGISLEDQAIKLSSIEVSTDEEKPQNGSVIT
ccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHcccccHHHHHHHHHHHHHcEEEcccccccccccccEEEEEEEEcccEEEEHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHccccccccccHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHccccccccEEEccccccccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHccccccccHHHHHHHHHHHHcccccccccHHHHHHHHHHHcccHHHHHHHcccccccccccccccccccccccccccccccccccc
ccHHHHHHHHHHHHHHHHHHHHHHEEEcccccccHcccccccccccccHHHHHHHHHHHHccHHHHHHHHHHHcccEEccccccccccccccEEEEEEHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHccccHHHHHHHHHHHHHccccccHEEEccccccccHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHccccccEEEEEEEccEEcccHHHHHHHHHHHHHHHHccccccHHEEEEEEEEHHHHHHcHccccHHHHHEEEEEHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccc
mtpseftgyphaSLINVILGITLALvihpgnpevkfnagkapaikqiNIMDGFLdmgrnllpdNIFQAAFQQTATTYIEDSSANATSAVKAMKRsigyrdgtntLGVIFFSLVFGsvlgtlpgdkkqSVIDFFQTVYETLLQMLLGTICSANATSAVKAMKRnigyrdgtntLGVIFFSLVFGsvlgtlpgdkkqSVIDFFQTVYETLLQMLLGTIwftpigvgSVICGKIISIANIGLALHQLSLFILCTVGGFLIYQLIISQLIYFIIIRKNPYEYYYKFSSAIITAFATasksaslpiTFRVMDDVakmnprisrfilpigtinmdgsalylPCAVIFLAQINNIYLGFGEIFTIGLACLftsfssaaipSAAIVLVVMLCStinapiddvTLLFAVDWFvdrfrtpnnllgdCYAVAVVEHLSQKElnedledghtnkgisleDQAIKLSsievstdeekpqngsvit
mtpseftgypHASLINVILGITLALVIHPGNPEVKFNAGKAPAIKQINIMDGFLDMGRNLLPDNIFQAAFQQTATTYIEDSSANATSAVKAMKRSIGYRDGTNTLGVIFFSLVFGSVLGTLPGDKKQSVIDFFQTVYETLLQMLLGTICSANATSAVKAMKRNIGYRDGTNTLGVIFFSLVFGSVLGTLPGDKKQSVIDFFQTVYETLLQMLLGTIWFTPIGVGSVICGKIISIANIGLALHQLSLFILCTVGGFLIYQLIISQLIYFIIIRKNPYEYYYKFSSAIITAFATASKSASLPITFRVMDDVAKMNPRISRFILPIGTINMDGSALYLPCAVIFLAQINNIYLGFGEIFTIGLACLFTSFSSAAIPSAAIVLVVMLCSTINAPIDDVTLLFAVDWFVDRFRTPNNLLGDCYAVAVVEHLSQKELNEDLEDGHTNKGISLEDQAIKLSsievstdeekpqngsvit
MTPSEFTGYPHASLINVILGITLALVIHPGNPEVKFNAGKAPAIKQINIMDGFLDMGRNLLPDNIFQAAFQQTATTYIEDSSANATSAVKAMKRSIGYRDGTNTLGVIFFSLVFGSVLGTLPGDKKQSVIDFFQTVYETLLQMLLGTICSANATSAVKAMKRNIGYRDGTNTLGVIFFSLVFGSVLGTLPGDKKQSVIDFFQTVYETLLQMLLGTIWFTPIGVGSVICGKIISIANIGLALHQLSLFILCTVGGfliyqliisqliyfiiiRKNPYEYYYKfssaiitafatasksasLPITFRVMDDVAKMNPRISRFILPIGTINMDGSALYLPCAVIFLAQINNIYLGFGEIFTIGLACLFTsfssaaipsaaiVLVVMLCSTINAPIDDVTLLFAVDWFVDRFRTPNNLLGDCYAVAVVEHLSQKELNEDLEDGHTNKGISLEDQAIKLSSIEVSTDEEKPQNGSVIT
******TGYPHASLINVILGITLALVIHPGNPEVKFNAGKAPAIKQINIMDGFLDMGRNLLPDNIFQAAFQQTATTYIED******SAVKAMKRSIGYRDGTNTLGVIFFSLVFGSVLGTLPGDKKQSVIDFFQTVYETLLQMLLGTICSANATSAVKAMKRNIGYRDGTNTLGVIFFSLVFGSVLGTLPGDKKQSVIDFFQTVYETLLQMLLGTIWFTPIGVGSVICGKIISIANIGLALHQLSLFILCTVGGFLIYQLIISQLIYFIIIRKNPYEYYYKFSSAIITAFATASKSASLPITFRVMDDVAKMNPRISRFILPIGTINMDGSALYLPCAVIFLAQINNIYLGFGEIFTIGLACLFTSFSSAAIPSAAIVLVVMLCSTINAPIDDVTLLFAVDWFVDRFRTPNNLLGDCYAVAVVEHL**********************************************
*TPSEFTGYPHASLINVILGITLALVIHPGNPEVKFNAGKAPAIKQINIMDGFLDMGRNLLPDNIFQAAFQQTATTYIEDS*********AMKRSIGYRDGTNTLGVIFFSLVFGSVLGTLPGDKKQS***************LLGTICSANATSAVKAMKRNIGYRDGTNTLGVIFFSLVFGSVLGTLPGDKKQSVIDFFQTVYETLLQMLLGTIWFTPIGVGSVICGKIISIANIGLALHQLSLFILCTVGGFLIYQLIISQLIYFIIIRKNPYEYYYKFSSAIITAFATASKSASLPITFRVMDDVAKMNPRISRFILPIGTINMDGSALYLPCAVIFLAQINNIYLGFGEIFTIGLACLFTSFSSAAIPSAAIVLVVMLCSTINAPIDDVTLLFAVDWFVDRFRTPNNLLGDCYAVAVVEHLS*********************************************
********YPHASLINVILGITLALVIHPGNPEVKFNAGKAPAIKQINIMDGFLDMGRNLLPDNIFQAAFQQTATTYIEDSSANATSAVKAMKRSIGYRDGTNTLGVIFFSLVFGSVLGTLPGDKKQSVIDFFQTVYETLLQMLLGTICSANATSAVKAMKRNIGYRDGTNTLGVIFFSLVFGSVLGTLPGDKKQSVIDFFQTVYETLLQMLLGTIWFTPIGVGSVICGKIISIANIGLALHQLSLFILCTVGGFLIYQLIISQLIYFIIIRKNPYEYYYKFSSAIITAFATASKSASLPITFRVMDDVAKMNPRISRFILPIGTINMDGSALYLPCAVIFLAQINNIYLGFGEIFTIGLACLFTSFSSAAIPSAAIVLVVMLCSTINAPIDDVTLLFAVDWFVDRFRTPNNLLGDCYAVAVVEHLSQKELNEDLEDGHTNKGISLEDQAIKLSSIEV**************
MTPSEFTGYPHASLINVILGITLALVIHPGNPE**********IKQINIMDGFLDMGRNLLPDNIFQAAFQQTATTYIEDSSANATSAVKAMKRSIGYRDGTNTLGVIFFSLVFGSVLGTLPGDKKQSVIDFFQTVYETLLQMLLGTICSANATSAVKAMKRNIGYRDGTNTLGVIFFSLVFGSVLGTLPGDKKQSVIDFFQTVYETLLQMLLGTIWFTPIGVGSVICGKIISIANIGLALHQLSLFILCTVGGFLIYQLIISQLIYFIIIRKNPYEYYYKFSSAIITAFATASKSASLPITFRVMDDVAKMNPRISRFILPIGTINMDGSALYLPCAVIFLAQINNIYLGFGEIFTIGLACLFTSFSSAAIPSAAIVLVVMLCSTINAPIDDVTLLFAVDWFVDRFRTPNNLLGDCYAVAVVEHLSQKELNEDLED***********************************
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MTPSEFTGYPHASLINVILGITLALVIHPGNPEVKFNAGKAPAIKQINIMDGFLDMGRNLLPDNIFQAAFQQTATTYIEDSSANATSAVKAMKRSIGYRDGTNTLGVIFFSLVFGSVLGTLPGDKKQSVIDFFQTVYETLLQMLLGTICSANATSAVKAMKRNIGYRDGTNTLGVIFFSLVFGSVLGTLPGDKKQSVIDFFQTVYETLLQMLLGTIWFTPIGVGSVICGKIISIANIGLALHQLSLFILCTVGGFLIYQLIISQLIYFIIIRKNPYEYYYKFSSAIITAFATASKSASLPITFRVMDDVAKMNPRISRFILPIGTINMDGSALYLPCAVIFLAQINNIYLGFGEIFTIGLACLFTSFSSAAIPSAAIVLVVMLCSTINAPIDDVTLLFAVDWFVDRFRTPNNLLGDCYAVAVVEHLSQKELNEDLEDGHTNKGISLEDQAIKLSSIEVSTDEEKPQNGSVIT
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

No hits with e-value below 0.001 by BLAST

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query472
FB|FBgn0026438579 Eaat2 "Excitatory amino acid t 0.644 0.525 0.431 1.1e-80
UNIPROTKB|P43004574 SLC1A2 "Excitatory amino acid 0.588 0.484 0.313 2.9e-62
MGI|MGI:101931572 Slc1a2 "solute carrier family 0.633 0.522 0.300 1.6e-61
UNIPROTKB|F1SHF9576 SLC1A2 "Uncharacterized protei 0.629 0.515 0.299 2e-61
UNIPROTKB|F1MUJ6576 SLC1A2 "Uncharacterized protei 0.629 0.515 0.299 2e-61
UNIPROTKB|F1PU03574 SLC1A2 "Uncharacterized protei 0.629 0.517 0.299 2.6e-61
UNIPROTKB|F1Q4B2568 SLC1A2 "Uncharacterized protei 0.629 0.522 0.299 2.6e-61
UNIPROTKB|J9P0G3607 SLC1A2 "Uncharacterized protei 0.629 0.489 0.299 2.6e-61
UNIPROTKB|F1M9A6572 Slc1a2 "Excitatory amino acid 0.688 0.568 0.290 4.2e-61
UNIPROTKB|G3V6R0570 Slc1a2 "Excitatory amino acid 0.688 0.570 0.290 4.2e-61
FB|FBgn0026438 Eaat2 "Excitatory amino acid transporter 2" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 657 (236.3 bits), Expect = 1.1e-80, Sum P(2) = 1.1e-80
 Identities = 133/308 (43%), Positives = 188/308 (61%)

Query:   126 KQSVIDFF-QTVYETLLQMLLGTICSANATSAVKAMKRNIGYRDGTNTLGVIFFSLVFGS 184
             K S++  F +T+ +TL         S + T  V  + R+I YR GTNTLG++FF LVFG+
Sbjct:   199 KPSILHVFNETMNDTLASGSEAQRLSEDLTEDV-VLVRDIQYRSGTNTLGIVFFCLVFGT 257

Query:   185 VLGTLPGDKKQSVIDFFQTVYETLLQMLLGTIWFTPIGVGSVICGKIISIANIGLALHQL 244
              LGT+ G K Q V+DFF  ++E +++M+   +W TP+G+ SVI GKI+S+ ++GL + QL
Sbjct:   258 FLGTI-GQKGQVVVDFFAAIFEVIMKMVTCVMWLTPVGISSVIAGKILSVGDLGLVMSQL 316

Query:   245 SLFILCTVGGXXXXXXXXXXXXXXXXXRKNPYEYYYKXXXXXXXXXXXXXXXXXLPITFR 304
               FI+    G                 R+NP+++Y                   LPITFR
Sbjct:   317 MWFIVTVAIGVFIYQFVVMQAIYFVVVRRNPFKFYAGLIQAMLTAFATASTAAALPITFR 376

Query:   305 VMDDVAKMNPRISRFILPIG-TINMDGSALYLPCAVIFLAQINNIYLGFGEIFTIGLACL 363
              M++  K++PRI+RF+LPIG  INMDG+ALY+  A IF+AQ++ + LGFGE+ T+ L   
Sbjct:   377 CMNEKLKVDPRITRFVLPIGCNINMDGTALYIAVASIFIAQMSGMVLGFGELLTVLLTST 436

Query:   364 FTXXXXXXXXXXXXVLVVMLCSTINAPIDDVTLLFAVDWFVDRFRTPNNLLGDCYAVAVV 423
                           VL++++ + I+AP+ DVTLLFAVDWFVDR RT NN+LGDCY  AVV
Sbjct:   437 AASMSSASVPSAALVLLLVVLTAIDAPVQDVTLLFAVDWFVDRIRTTNNMLGDCYTAAVV 496

Query:   424 EHLSQKEL 431
             E LS+KEL
Sbjct:   497 EELSRKEL 504
GO:0005886 "plasma membrane" evidence=ISS
GO:0015501 "glutamate:sodium symporter activity" evidence=ISS
GO:0015183 "L-aspartate transmembrane transporter activity" evidence=IDA
GO:0017153 "sodium:dicarboxylate symporter activity" evidence=IEA
GO:0016020 "membrane" evidence=IEA
GO:0006835 "dicarboxylic acid transport" evidence=IEA
GO:0005369 "taurine:sodium symporter activity" evidence=IDA
GO:0015734 "taurine transport" evidence=IMP;IDA
UNIPROTKB|P43004 SLC1A2 "Excitatory amino acid transporter 2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:101931 Slc1a2 "solute carrier family 1 (glial high affinity glutamate transporter), member 2" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F1SHF9 SLC1A2 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|F1MUJ6 SLC1A2 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1PU03 SLC1A2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1Q4B2 SLC1A2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|J9P0G3 SLC1A2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1M9A6 Slc1a2 "Excitatory amino acid transporter 2" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|G3V6R0 Slc1a2 "Excitatory amino acid transporter 2" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query472
pfam00375388 pfam00375, SDF, Sodium:dicarboxylate symporter fam 3e-60
COG1301415 COG1301, GltP, Na+/H+-dicarboxylate symporters [En 1e-48
PRK11283437 PRK11283, gltP, glutamate/aspartate:proton symport 1e-22
PRK13027421 PRK13027, PRK13027, C4-dicarboxylate transporter D 4e-20
PRK01663428 PRK01663, PRK01663, C4-dicarboxylate transporter D 6e-18
COG1823458 COG1823, COG1823, Predicted Na+/dicarboxylate symp 2e-10
PRK14695319 PRK14695, PRK14695, serine/threonine transporter S 5e-10
PRK13628402 PRK13628, PRK13628, serine/threonine transporter S 5e-07
COG3633407 COG3633, SstT, Na+/serine symporter [Amino acid tr 2e-05
COG1301415 COG1301, GltP, Na+/H+-dicarboxylate symporters [En 0.002
>gnl|CDD|215884 pfam00375, SDF, Sodium:dicarboxylate symporter family Back     alignment and domain information 
 Score =  201 bits (514), Expect = 3e-60
 Identities = 91/334 (27%), Positives = 166/334 (49%), Gaps = 19/334 (5%)

Query: 101 GTNTLGVIFFSLVFGSVLGTL------PGDKKQSVIDFFQTVYETLLQMLLGTICSANAT 154
           G  TL     +    +++G L      PG          ++     +  LL  + +   +
Sbjct: 66  GGKTLLYFLVTTAIAAIIGLLVALLFQPGVGLLLSAASAESAKTLEVPSLLDFLLNIIPS 125

Query: 155 SAVKAMKRNIGYRDGTNTLGVIFFSLVFGSVLGTLPGDKKQSVIDFFQTVYETLLQMLLG 214
           +   A+          N L VI F+++FG  L  L G+K + ++ F +++ E +++++  
Sbjct: 126 NIFAALAEG-------NVLQVIVFAILFGIALAAL-GEKGKPLLKFLESLNEVIMKVVNW 177

Query: 215 TIWFTPIGVGSVICGKIISIANIGL-ALHQLSLFILCTVGGFLIYQLIISQLIYFIIIRK 273
            +   PIGV ++I     ++   GL  L  L  F+L       I+  ++  L+   +   
Sbjct: 178 VMKLAPIGVFALIAN---TVGTFGLGTLGSLGKFVLTVYLALAIHLFVVYPLLLKFLTGL 234

Query: 274 NPYEYYYKFSSAIITAFATASKSASLPITFRVMDDVAKMNPRISRFILPIG-TINMDGSA 332
           NP+++  K   A++TAF+TAS +A+LP+T    +    ++  I+ F+LP+G TINMDG+A
Sbjct: 235 NPFKFLKKILPALLTAFSTASSAATLPVTLECAEKNLGVSKSIASFVLPLGATINMDGTA 294

Query: 333 LYLPCAVIFLAQINNIYLGFGEIFTIGLACLFTSFSSAAIPSAAIVLVVMLCSTINAPID 392
           +YL  A IF+AQ   + L  G++  + L     S  +A +P   +V + ++ S +  P++
Sbjct: 295 IYLAVAAIFIAQAYGVDLSLGQLLLLILTATLASIGAAGVPGGGLVALALVLSALGLPVE 354

Query: 393 DVTLLFAVDWFVDRFRTPNNLLGDCYAVAVVEHL 426
            + L+ A+D  +D FRT  N+ GD  A  +V  L
Sbjct: 355 GIALILAIDRILDMFRTAVNVTGDAAAAVIVAKL 388

Length = 388
>gnl|CDD|224220 COG1301, GltP, Na+/H+-dicarboxylate symporters [Energy production and conversion] Back     alignment and domain information
>gnl|CDD|183075 PRK11283, gltP, glutamate/aspartate:proton symporter; Provisional Back     alignment and domain information
>gnl|CDD|183850 PRK13027, PRK13027, C4-dicarboxylate transporter DctA; Reviewed Back     alignment and domain information
>gnl|CDD|234968 PRK01663, PRK01663, C4-dicarboxylate transporter DctA; Reviewed Back     alignment and domain information
>gnl|CDD|224736 COG1823, COG1823, Predicted Na+/dicarboxylate symporter [General function prediction only] Back     alignment and domain information
>gnl|CDD|173158 PRK14695, PRK14695, serine/threonine transporter SstT; Provisional Back     alignment and domain information
>gnl|CDD|184190 PRK13628, PRK13628, serine/threonine transporter SstT; Provisional Back     alignment and domain information
>gnl|CDD|226159 COG3633, SstT, Na+/serine symporter [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|224220 COG1301, GltP, Na+/H+-dicarboxylate symporters [Energy production and conversion] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 472
KOG3787|consensus507 100.0
COG1301415 GltP Na+/H+-dicarboxylate symporters [Energy produ 100.0
PRK11283437 gltP glutamate/aspartate:proton symporter; Provisi 100.0
PRK01663428 C4-dicarboxylate transporter DctA; Reviewed 100.0
PRK13027421 C4-dicarboxylate transporter DctA; Reviewed 100.0
PF00375390 SDF: Sodium:dicarboxylate symporter family; InterP 100.0
PRK13628402 serine/threonine transporter SstT; Provisional 100.0
PRK14695319 serine/threonine transporter SstT; Provisional 100.0
COG1823458 Predicted Na+/dicarboxylate symporter [General fun 100.0
COG3633407 SstT Na+/serine symporter [Amino acid transport an 100.0
KOG3787|consensus507 98.43
PRK01663428 C4-dicarboxylate transporter DctA; Reviewed 97.43
PF00375390 SDF: Sodium:dicarboxylate symporter family; InterP 97.42
PRK11283437 gltP glutamate/aspartate:proton symporter; Provisi 97.0
PRK13027421 C4-dicarboxylate transporter DctA; Reviewed 96.82
COG1301415 GltP Na+/H+-dicarboxylate symporters [Energy produ 94.7
PRK14695319 serine/threonine transporter SstT; Provisional 93.26
PRK13628402 serine/threonine transporter SstT; Provisional 92.98
>KOG3787|consensus Back     alignment and domain information 
Probab=100.00  E-value=8.6e-90  Score=699.61  Aligned_cols=361  Identities=38%  Similarity=0.731  Sum_probs=308.7

Q ss_pred             CcccchHHHHHHHHHHHHHHHHHHHHhCCCCCCcccccC-CC----ccchhhhhhhhHHHhhhccCcccHHHHHhhhccc
Q psy907            1 MTPSEFTGYPHASLINVILGITLALVIHPGNPEVKFNAG-KA----PAIKQINIMDGFLDMGRNLLPDNIFQAAFQQTAT   75 (472)
Q Consensus         1 ~g~~~~~yy~~tt~~Av~~Gi~l~~~i~PG~g~~~~~~~-~~----~~~~~~~~lD~~~~lf~Nlipan~~~~~~~~~~~   75 (472)
                      ||.|++.||++||++|+++|++++.+||||.+..+.+.+ ..    ..++.|+++|++||    +||+|++|++++|++|
T Consensus        87 lg~~av~YY~~TT~~Av~lGI~lV~~IhPG~~~~~~~~~~~~~~~~~vs~~DtfLDLiRN----mFPeNlvqAtf~q~~T  162 (507)
T KOG3787|consen   87 LGMRAVVYYMSTTIIAVILGIALVLIIHPGDPTKKNELGREGLIDSNVSTLDTFLDLIRN----MFPENLVQATFQQYQT  162 (507)
T ss_pred             chHHHHHHHHHHHHHHHHHHHheeEEecCCChhhhcccCcccccccccchHHHHHHHHHh----hCcHHHHHHHHHHHee
Confidence            689999999999999999999999999999986543221 11    23345555555555    4555555555555555


Q ss_pred             eeeecCC--CcchhhhhhhhcccccccCcccchhHHHHHHhhhhccCCCCCcchhHHHHHHHHHHHHHHhhhhccccccc
Q psy907           76 TYIEDSS--ANATSAVKAMKRSIGYRDGTNTLGVIFFSLVFGSVLGTLPGDKKQSVIDFFQTVYETLLQMLLGTICSANA  153 (472)
Q Consensus        76 ~~~~~~~--~~~~~~~~~~~~~~~~~~g~NiLGlI~FSi~fGi~lg~m~~~~~~~l~~ff~~lne~~~~~~~~~~~~~~~  153 (472)
                      .+.+...  ....+.+...+..+.|.+|||+||+|+||++||+++|+|||++ ++++|                      
T Consensus       163 ~y~~~~~~~~~~~t~~~~~~~~~~~~~GmNvLGlVvF~~~fGivig~lG~~g-~~lv~----------------------  219 (507)
T KOG3787|consen  163 KYKPVTKASPGNATEEALPKGVPGYTDGMNVLGLVVFCIVFGIVIGKLGEKG-QVLVD----------------------  219 (507)
T ss_pred             EEEeecccCCCCccccccccCccccccCccchhHHHHHHHHHHHHHhhcccc-HHHHH----------------------
Confidence            5443332  1111111222346689999999888888888777777776665 44444                      


Q ss_pred             hhhHhhhhhccccCCCCchhHHHHHHHHHHHHhccCCCCcccHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy907          154 TSAVKAMKRNIGYRDGTNTLGVIFFSLVFGSVLGTLPGDKKQSVIDFFQTVYETLLQMLLGTIWFTPIGVGSVICGKIIS  233 (472)
Q Consensus       154 ~~~~~~~~~~~~~~~~~n~L~vivfai~~Gial~~~~~e~~~~l~~~~~~l~~~~~kiv~~Im~~~PigVf~lia~~i~~  233 (472)
                                                                    ||+.+++++||++.|+|||+|+|+.+++|+.+..
T Consensus       220 ----------------------------------------------FF~~L~e~iMklV~~iMWy~PvGI~fLIagkIle  253 (507)
T KOG3787|consen  220 ----------------------------------------------FFNSLNEAIMKLVSWIMWYSPVGILFLIAGKILE  253 (507)
T ss_pred             ----------------------------------------------HHHHHHHHHHHHHHHHHHHcchhHHHHHHHhhhc
Confidence                                                          4555555555788999999999999999999999


Q ss_pred             hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHhHHHHHHHhhccCCcccHHHHHHHHHhhcCCC
Q psy907          234 IANIGLALHQLSLFILCTVGGFLIYQLIISQLIYFIIIRKNPYEYYYKFSSAIITAFATASKSASLPITFRVMDDVAKMN  313 (472)
Q Consensus       234 ~~~~~~l~~~l~~~v~~~~~~~~i~~lvv~~ll~~~~~r~np~~~l~~~~~~~l~Af~T~SS~atLPv~l~~~~~~lgv~  313 (472)
                      ++++......|++|++++++++++|.++++|++|++++|+||++|++.+..|+++||+|+||+||||+++||+||++|+|
T Consensus       254 m~Dl~~~~~~Lg~Yv~TVi~GL~iH~~i~lPliYF~~TrkNP~~f~~Gm~Qal~TA~gTsSSsATLPitfkCleEn~gVD  333 (507)
T KOG3787|consen  254 MEDLGVTARQLGMYVVTVILGLFIHGFIVLPLIYFVVTRKNPFRFIAGLLQALATAFGTASSSATLPITFKCLEENLGVD  333 (507)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHHHHHhhheeEEEEccChHHHHHHHHHHHHHHHhcccccccchHHHHHHHHhCCCC
Confidence            99998888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCceeEEeecc-ccccCCccchHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhhcCCCChhHHHHHHHHHHhcCCCcc
Q psy907          314 PRISRFILPIG-TINMDGSALYLPCAVIFLAQINNIYLGFGEIFTIGLACLFTSFSSAAIPSAAIVLVVMLCSTINAPID  392 (472)
Q Consensus       314 ~~ia~fvlPlG-tin~~G~al~~~i~~iFiaq~~Gi~ls~~~~~~iil~~~l~S~g~agVPgg~~v~~~~vl~~lGlP~e  392 (472)
                      |++++|++|+| |+||||+|+|.+++++|+||++|++++++|++++.++++++|+|+||||++|++++.++|+++|+|.+
T Consensus       334 ~RiTRFVLPvGATINMDGtALYEAVAaIFIAQln~~~Ls~gqivTIsiTAT~ASIGaAgiP~AGLVTm~iVLtaVgLP~~  413 (507)
T KOG3787|consen  334 KRVTRFVLPVGATINMDGTALYEAVAAIFIAQLNNVELSFGQIVTISITATAASIGAAGVPQAGLVTMLIVLTAVGLPTK  413 (507)
T ss_pred             cceeeeecccCceecCChHHHHHHHHHHHHHHHhCceeccceEEEEEeehhhhhccccCCCccchhhhhhhhhhcCCCcc
Confidence            99999999999 99999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHhhHhhhhccchhhhhhhhHHHHHHHHHhhhhhcchh
Q psy907          393 DVTLLFAVDWFVDRFRTPNNLLGDCYAVAVVEHLSQKELNED  434 (472)
Q Consensus       393 ~i~li~avd~llD~~rT~~NV~gd~~~a~iv~~~~~~~~~~~  434 (472)
                      .+.|+++|||++||+||++||.||+.+|.++.|++++|++++
T Consensus       414 DisLi~aVDWllDR~RT~vNVlGDa~gagiv~hl~~~~l~~~  455 (507)
T KOG3787|consen  414 DISLIFAVDWLLDRLRTTVNVLGDALGAGIVEHLSKKELDAA  455 (507)
T ss_pred             ceeEEeehHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhc
Confidence            999999999999999999999999999999999999887654

>COG1301 GltP Na+/H+-dicarboxylate symporters [Energy production and conversion] Back     alignment and domain information
>PRK11283 gltP glutamate/aspartate:proton symporter; Provisional Back     alignment and domain information
>PRK01663 C4-dicarboxylate transporter DctA; Reviewed Back     alignment and domain information
>PRK13027 C4-dicarboxylate transporter DctA; Reviewed Back     alignment and domain information
>PF00375 SDF: Sodium:dicarboxylate symporter family; InterPro: IPR001991 It has been shown [] that integral membrane proteins that mediate the uptake of a wide variety of molecules with the concomitant uptake of sodium ions (sodium symporters) can be grouped, on the basis of sequence and functional similarities into a number of distinct families Back     alignment and domain information
>PRK13628 serine/threonine transporter SstT; Provisional Back     alignment and domain information
>PRK14695 serine/threonine transporter SstT; Provisional Back     alignment and domain information
>COG1823 Predicted Na+/dicarboxylate symporter [General function prediction only] Back     alignment and domain information
>COG3633 SstT Na+/serine symporter [Amino acid transport and metabolism] Back     alignment and domain information
>KOG3787|consensus Back     alignment and domain information
>PRK01663 C4-dicarboxylate transporter DctA; Reviewed Back     alignment and domain information
>PF00375 SDF: Sodium:dicarboxylate symporter family; InterPro: IPR001991 It has been shown [] that integral membrane proteins that mediate the uptake of a wide variety of molecules with the concomitant uptake of sodium ions (sodium symporters) can be grouped, on the basis of sequence and functional similarities into a number of distinct families Back     alignment and domain information
>PRK11283 gltP glutamate/aspartate:proton symporter; Provisional Back     alignment and domain information
>PRK13027 C4-dicarboxylate transporter DctA; Reviewed Back     alignment and domain information
>COG1301 GltP Na+/H+-dicarboxylate symporters [Energy production and conversion] Back     alignment and domain information
>PRK14695 serine/threonine transporter SstT; Provisional Back     alignment and domain information
>PRK13628 serine/threonine transporter SstT; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query472
2nwl_A422 GLTPH, glutamate symport protein; alpha helical, m 8e-51
2nwl_A422 GLTPH, glutamate symport protein; alpha helical, m 1e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-04
>2nwl_A GLTPH, glutamate symport protein; alpha helical, membrane protein, helical hairpin, unwound RE transport protein; HET: PLM; 2.96A {Pyrococcus horikoshii} PDB: 2nww_A* 1xfh_A* 2nwx_A* 3v8g_A 3v8f_A 3kbc_A Length = 422 Back     alignment and structure
 Score =  177 bits (450), Expect = 8e-51
 Identities = 83/349 (23%), Positives = 151/349 (43%), Gaps = 37/349 (10%)

Query: 105 LGVIFFSLVFGSVLGTL--PG---DKKQSVIDFFQTVYETLLQMLLGTICSANATSAVKA 159
           L    F++  G ++  L  PG           F       L+ +LL  +     T+   A
Sbjct: 90  LLTSAFAVTLGIIMARLFNPGAGIHLAVGGQQFQPHQAPPLVHILLDIV----PTNPFGA 145

Query: 160 MKRNIGYRDGTNTLGVIFFSLVFGSVLGTLP-------GDKKQSVIDFFQTVYETLLQML 212
           +            L  IFF+++ G  +  L            ++++D    + E + +++
Sbjct: 146 LANG-------QVLPTIFFAIILGIAITYLMNSENEKVRKSAETLLDAINGLAEAMYKIV 198

Query: 213 LGTIWFTPIGVGSVICGKIISIANIGL-ALHQLSLFILCTVGGFLIYQLIISQLIYFIII 271
            G + + PIGV ++I      +A  G+  + +L+        G  +  L++  ++  I  
Sbjct: 199 NGVMQYAPIGVFALIAY---VMAEQGVHVVGELAKVTAAVYVGLTLQILLVYFVLLKIY- 254

Query: 272 RKNPYEYYYKFSSAIITAFATASKSASLPITFRVMDDVAKMNPRISRFILPIG-TINMDG 330
             +P  +      A++TAF T S S +LP+T RV  +   ++  I  F LP+G TINMDG
Sbjct: 255 GIDPISFIKHAKDAMLTAFVTRSSSGTLPVTMRVAKE-MGISEGIYSFTLPLGATINMDG 313

Query: 331 SALYLPCAVIFLAQINNIYLGFGEIFTIGLACLFTSFSSAAIPSAAIVLVVMLCSTINAP 390
           +ALY      F+A     +L  G+  TI L  +  S  +A +P A  +++ M+  ++  P
Sbjct: 314 TALYQGVCTFFIANALGSHLTVGQQLTIVLTAVLASIGTAGVPGAGAIMLAMVLHSVGLP 373

Query: 391 IDD------VTLLFAVDWFVDRFRTPNNLLGDCYAVAVVEHLSQKELNE 433
           + D        ++  +D  +D  RT  N+ GD    A+V   ++  L  
Sbjct: 374 LTDPNVAAAYAMILGIDAILDMGRTMVNVTGDLTGTAIVAK-TEGTLVP 421
>2nwl_A GLTPH, glutamate symport protein; alpha helical, membrane protein, helical hairpin, unwound RE transport protein; HET: PLM; 2.96A {Pyrococcus horikoshii} PDB: 2nww_A* 1xfh_A* 2nwx_A* 3v8g_A 3v8f_A 3kbc_A Length = 422 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query472
2nwl_A422 GLTPH, glutamate symport protein; alpha helical, m 100.0
2nwl_A422 GLTPH, glutamate symport protein; alpha helical, m 95.37
>2nwl_A GLTPH, glutamate symport protein; alpha helical, membrane protein, helical hairpin, unwound RE transport protein; HET: PLM; 2.96A {Pyrococcus horikoshii} PDB: 2nww_A* 1xfh_A* 2nwx_A* 3v8g_A 3v8f_A 3kbc_A Back     alignment and structure
Probab=100.00  E-value=1.1e-70  Score=575.98  Aligned_cols=326  Identities=25%  Similarity=0.402  Sum_probs=292.8

Q ss_pred             CcccchHHHHHHHHHHHHHHHHHHHHhCCCCCCcccccCCCccchhhhhhhhHHHhhhccCcccHHHHHhhhccceeeec
Q psy907            1 MTPSEFTGYPHASLINVILGITLALVIHPGNPEVKFNAGKAPAIKQINIMDGFLDMGRNLLPDNIFQAAFQQTATTYIED   80 (472)
Q Consensus         1 ~g~~~~~yy~~tt~~Av~~Gi~l~~~i~PG~g~~~~~~~~~~~~~~~~~lD~~~~lf~Nlipan~~~~~~~~~~~~~~~~   80 (472)
                      +|.|++.||..||++|+.+|+.+++++|||.+.+.+..+...+   ....+.+.+.+.|++|+|+++++.          
T Consensus        81 i~~~ti~~~~~tt~iA~~igl~~~~~~~pg~g~~~~~~~~~~~---~~~~~~~~~~l~~~iP~N~~~a~a----------  147 (422)
T 2nwl_A           81 VGVKIVVYYLLTSAFAVTLGIIMARLFNPGAGIHLAVGGQQFQ---PHQAPPLVHILLDIVPTNPFGALA----------  147 (422)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCSCCCCCCCCCC--------CCTHHHHGGGSCSCHHHHHH----------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccccccccccc---cccCCcHHHHHHHHHhhChHHHHh----------
Confidence            3689999999999999999999999999998854221101000   111223556677899999999885          


Q ss_pred             CCCcchhhhhhhhcccccccCcccchhHHHHHHhhhhccCCCCCcchhHHHHHHHHHHHHHHhhhhccccccchhhHhhh
Q psy907           81 SSANATSAVKAMKRSIGYRDGTNTLGVIFFSLVFGSVLGTLPGDKKQSVIDFFQTVYETLLQMLLGTICSANATSAVKAM  160 (472)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~g~NiLGlI~FSi~fGi~lg~m~~~~~~~l~~ff~~lne~~~~~~~~~~~~~~~~~~~~~~  160 (472)
                                                                                                      
T Consensus       148 --------------------------------------------------------------------------------  147 (422)
T 2nwl_A          148 --------------------------------------------------------------------------------  147 (422)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhccccCCCCchhHHHHHHHHHHHHhccCCC--------CcccHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy907          161 KRNIGYRDGTNTLGVIFFSLVFGSVLGTLPG--------DKKQSVIDFFQTVYETLLQMLLGTIWFTPIGVGSVICGKII  232 (472)
Q Consensus       161 ~~~~~~~~~~n~L~vivfai~~Gial~~~~~--------e~~~~l~~~~~~l~~~~~kiv~~Im~~~PigVf~lia~~i~  232 (472)
                              ++|++|+++||+++|+++.+. +        |+++++.+++|+++++++|+++|+|+++|+|+|+++++.++
T Consensus       148 --------~~~~L~vivfai~~Gial~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~kiv~~im~laPigvf~lia~~~~  218 (422)
T 2nwl_A          148 --------NGQVLPTIFFAIILGIAITYL-MNSENEKVRKSAETLLDAINGLAEAMYKIVNGVMQYAPIGVFALIAYVMA  218 (422)
T ss_dssp             --------TCCHHHHHHHHHHHHHHHHHH-HTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHT
T ss_pred             --------hhchHHHHHHHHHHHHHHHHc-ccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                    458999999999999999988 5        66789999999999999999999999999999999999999


Q ss_pred             HhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHhHHHHHHHhhccCCcccHHHHHHHHHhhcCC
Q psy907          233 SIANIGLALHQLSLFILCTVGGFLIYQLIISQLIYFIIIRKNPYEYYYKFSSAIITAFATASKSASLPITFRVMDDVAKM  312 (472)
Q Consensus       233 ~~~~~~~l~~~l~~~v~~~~~~~~i~~lvv~~ll~~~~~r~np~~~l~~~~~~~l~Af~T~SS~atLPv~l~~~~~~lgv  312 (472)
                      +. +.+.+ .++++|++++|+++++|.+++||++++ ++|+||++|+|+++|++++||+|+||+||||++|||+|| +|+
T Consensus       219 ~~-g~~~l-~~l~~~i~~~~~~~~i~~~vv~~~~~~-~~~~np~~~~k~~~~a~~~Af~T~SS~AtLPv~m~~~~~-lGv  294 (422)
T 2nwl_A          219 EQ-GVHVV-GELAKVTAAVYVGLTLQILLVYFVLLK-IYGIDPISFIKHAKDAMLTAFVTRSSSGTLPVTMRVAKE-MGI  294 (422)
T ss_dssp             TT-GGGCC-THHHHHHHHHHHHHHHHHHHTHHHHHH-HTTCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHT-TTC
T ss_pred             HH-HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCCCHHHHHHHHHHHHHHHHHhccHHhHHHHHHHHHHH-cCc
Confidence            74 56555 899999999999999999999999998 889999999999999999999999999999999999998 999


Q ss_pred             CcCceeEEeecc-ccccCCccchHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhhcCCCChhHHHHHHHHHHhcCCCc
Q psy907          313 NPRISRFILPIG-TINMDGSALYLPCAVIFLAQINNIYLGFGEIFTIGLACLFTSFSSAAIPSAAIVLVVMLCSTINAPI  391 (472)
Q Consensus       313 ~~~ia~fvlPlG-tin~~G~al~~~i~~iFiaq~~Gi~ls~~~~~~iil~~~l~S~g~agVPgg~~v~~~~vl~~lGlP~  391 (472)
                      ||++++|++|+| |+||||+|+|++++++|+||+||+|++++|++.++++++++|+|+||||||+++++.++|+++|+|.
T Consensus       295 ~~~i~~fvlPlGatinmdGtaiy~~~~aifiaq~~Gi~l~~~~~l~ii~~~~l~s~GaaGVPg~g~v~~~~vl~~~GlP~  374 (422)
T 2nwl_A          295 SEGIYSFTLPLGATINMDGTALYQGVCTFFIANALGSHLTVGQQLTIVLTAVLASIGTAGVPGAGAIMLAMVLHSVGLPL  374 (422)
T ss_dssp             CHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHTCCCCSSCCHHHHHHHHHHHHHSCSSSSHHHHHHHHHHHHHTCCT
T ss_pred             CcceeeEEeechhhhCCCchHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhccCCChhHHHHHHHHHHHcCCCc
Confidence            999999999999 9999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             c------hhHHHHhhHhhhhccchhhhhhhhHHHHHHHHHhhhhhcch
Q psy907          392 D------DVTLLFAVDWFVDRFRTPNNLLGDCYAVAVVEHLSQKELNE  433 (472)
Q Consensus       392 e------~i~li~avd~llD~~rT~~NV~gd~~~a~iv~~~~~~~~~~  433 (472)
                      |      ++++++++||++||+||++||+||++++.+++||++ ++|+
T Consensus       375 ~~~~~~~~i~lii~id~~~D~~rTa~NV~Gd~~~a~iv~~~~~-~~~~  421 (422)
T 2nwl_A          375 TDPNVAAAYAMILGIDAILDMGRTMVNVTGDLTGTAIVAKTEG-TLVP  421 (422)
T ss_dssp             TSTTHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred             hhhhhhhhHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHhhc-cccC
Confidence            9      999999999999999999999999999999999774 5553
>2nwl_A GLTPH, glutamate symport protein; alpha helical, membrane protein, helical hairpin, unwound RE transport protein; HET: PLM; 2.96A {Pyrococcus horikoshii} PDB: 2nww_A* 1xfh_A* 2nwx_A* 3v8g_A 3v8f_A 3kbc_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 472
d2nwwa1405 f.49.1.1 (A:12-416) Proton glutamate symport prote 5e-30
>d2nwwa1 f.49.1.1 (A:12-416) Proton glutamate symport protein {Pyrococcus horikoshii [TaxId: 53953]} Length = 405 Back     information, alignment and structure

class: Membrane and cell surface proteins and peptides
fold: Proton glutamate symport protein
superfamily: Proton glutamate symport protein
family: Proton glutamate symport protein
domain: Proton glutamate symport protein
species: Pyrococcus horikoshii [TaxId: 53953]

 Score =  118 bits (297), Expect = 5e-30
 Identities = 79/334 (23%), Positives = 139/334 (41%), Gaps = 33/334 (9%)

Query: 104 TLGVIFFSLVFGSVLGTLPGDKKQSVIDFFQTVYETLLQMLLGTICSANATSAVKAMKRN 163
           TLG+I   L        L    +Q        +   LL ++      A A          
Sbjct: 87  TLGIIMARLFNPGAGIHLAVGGQQFQPHQAPPLVHILLDIVPTNPFGALANG-------- 138

Query: 164 IGYRDGTNTLGVIFFSLVFGSVLGTLPGDKK-------QSVIDFFQTVYETLLQMLLGTI 216
                    L  IFF+++ G  +  L   +        ++++D    + E + +++ G +
Sbjct: 139 -------QVLPTIFFAIILGIAITYLMNSENEKVRKSAETLLDAINGLAEAMYKIVNGVM 191

Query: 217 WFTPIGVGSVICGKIISIANIGLALHQLSLFILCTVGGFLIYQLIISQLIYFIIIRKNPY 276
            + PIGV ++I   +       +        +   V   L  Q+++   +   I   +P 
Sbjct: 192 QYAPIGVFALIAYVMAEQGVHVVGE---LAKVTAAVYVGLTLQILLVYFVLLKIYGIDPI 248

Query: 277 EYYYKFSSAIITAFATASKSASLPITFRVMDDVAKMNPRISRFILPIG-TINMDGSALYL 335
            +      A++TAF T S S +LP+T RV  +   ++  I  F LP+G TINMDG+ALY 
Sbjct: 249 SFIKHAKDAMLTAFVTRSSSGTLPVTMRVAKE-MGISEGIYSFTLPLGATINMDGTALYQ 307

Query: 336 PCAVIFLAQINNIYLGFGEIFTIGLACLFTSFSSAAIPSAAIVLVVMLCSTINAPIDD-- 393
                F+A     +L  G+  TI L  +  S  +A +P A  +++ M+  ++  P+ D  
Sbjct: 308 GVCTFFIANALGSHLTVGQQLTIVLTAVLASIGTAGVPGAGAIMLAMVLHSVGLPLTDPN 367

Query: 394 ----VTLLFAVDWFVDRFRTPNNLLGDCYAVAVV 423
                 ++  +D  +D  RT  N+ GD    A+V
Sbjct: 368 VAAAYAMILGIDAILDMGRTMVNVTGDLTGTAIV 401

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query472
d2nwwa1405 Proton glutamate symport protein {Pyrococcus horik 100.0
d2nwwa1405 Proton glutamate symport protein {Pyrococcus horik 95.24
>d2nwwa1 f.49.1.1 (A:12-416) Proton glutamate symport protein {Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: Proton glutamate symport protein
superfamily: Proton glutamate symport protein
family: Proton glutamate symport protein
domain: Proton glutamate symport protein
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=100.00  E-value=1.1e-63  Score=518.85  Aligned_cols=322  Identities=25%  Similarity=0.409  Sum_probs=286.5

Q ss_pred             CcccchHHHHHHHHHHHHHHHHHHHHhCCCCCCcccccCCCccchhhhhhhhHHHhhhccCcccHHHHHhhhccceeeec
Q psy907            1 MTPSEFTGYPHASLINVILGITLALVIHPGNPEVKFNAGKAPAIKQINIMDGFLDMGRNLLPDNIFQAAFQQTATTYIED   80 (472)
Q Consensus         1 ~g~~~~~yy~~tt~~Av~~Gi~l~~~i~PG~g~~~~~~~~~~~~~~~~~lD~~~~lf~Nlipan~~~~~~~~~~~~~~~~   80 (472)
                      +|.|++.||+.||++|+.+|+.++++++||.+.+.+.......   ........+.+.+++|+|++++..          
T Consensus        70 l~~~ti~~~l~tt~iA~~igl~~~~~~~pg~~~~~~~~~~~~~---~~~~~~~~~~l~~~iP~Ni~~al~----------  136 (405)
T d2nwwa1          70 VGVKIVVYYLLTSAFAVTLGIIMARLFNPGAGIHLAVGGQQFQ---PHQAPPLVHILLDIVPTNPFGALA----------  136 (405)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHSCSCCCCCCCCCCCCCC---CCCCCCHHHHHGGGSCSCHHHHHH----------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhcccc---ccccchHHHHHHHhccCCHHHHhh----------
Confidence            4789999999999999999999999999999865432111111   111123566667899999999885          


Q ss_pred             CCCcchhhhhhhhcccccccCcccchhHHHHHHhhhhccCCCCCcchhHHHHHHHHHHHHHHhhhhccccccchhhHhhh
Q psy907           81 SSANATSAVKAMKRSIGYRDGTNTLGVIFFSLVFGSVLGTLPGDKKQSVIDFFQTVYETLLQMLLGTICSANATSAVKAM  160 (472)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~g~NiLGlI~FSi~fGi~lg~m~~~~~~~l~~ff~~lne~~~~~~~~~~~~~~~~~~~~~~  160 (472)
                                                                                                      
T Consensus       137 --------------------------------------------------------------------------------  136 (405)
T d2nwwa1         137 --------------------------------------------------------------------------------  136 (405)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhccccCCCCchhHHHHHHHHHHHHhccCCCC-------cccHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy907          161 KRNIGYRDGTNTLGVIFFSLVFGSVLGTLPGD-------KKQSVIDFFQTVYETLLQMLLGTIWFTPIGVGSVICGKIIS  233 (472)
Q Consensus       161 ~~~~~~~~~~n~L~vivfai~~Gial~~~~~e-------~~~~l~~~~~~l~~~~~kiv~~Im~~~PigVf~lia~~i~~  233 (472)
                              ++|++|+++||+++|+++...+++       +.+++.+++|+++++++|+++|+|+++|+|+|+++++.+++
T Consensus       137 --------~~~~l~vi~fail~Gial~~~~~~~~~~~~~~~~~l~~~~~~l~~v~~kii~~im~laPigvf~l~a~~~~~  208 (405)
T d2nwwa1         137 --------NGQVLPTIFFAIILGIAITYLMNSENEKVRKSAETLLDAINGLAEAMYKIVNGVMQYAPIGVFALIAYVMAE  208 (405)
T ss_dssp             --------SCCHHHHHHHHHHHHHHHHHHTTCSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHH
T ss_pred             --------cCCccchhhHHHHHHHHHHHhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence                    458899999999999988766332       23689999999999999999999999999999999999987


Q ss_pred             hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHhHHHHHHHhhccCCcccHHHHHHHHHhhcCCC
Q psy907          234 IANIGLALHQLSLFILCTVGGFLIYQLIISQLIYFIIIRKNPYEYYYKFSSAIITAFATASKSASLPITFRVMDDVAKMN  313 (472)
Q Consensus       234 ~~~~~~l~~~l~~~v~~~~~~~~i~~lvv~~ll~~~~~r~np~~~l~~~~~~~l~Af~T~SS~atLPv~l~~~~~~lgv~  313 (472)
                      . +.+.+ .++++|++++++++++|.++.++++.+ ++|+||++|+|+++|++++||+|+||+||+|+++||+|| +|+|
T Consensus       209 ~-g~~~l-~~l~~~~~~~~~~~~l~~~~~~~i~~~-~~~~~p~~~~~~~~~~~~~Af~T~SS~atlP~~~~~~~~-~gv~  284 (405)
T d2nwwa1         209 Q-GVHVV-GELAKVTAAVYVGLTLQILLVYFVLLK-IYGIDPISFIKHAKDAMLTAFVTRSSSGTLPVTMRVAKE-MGIS  284 (405)
T ss_dssp             T-GGGCC-THHHHHHHHHHHHHHHHHHHTHHHHHH-TTTCCHHHHHHHHHHHHHHHHHHCCTGGGHHHHHHHHHT-TTCC
T ss_pred             h-hhhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCChHHHhhhccchhheeeeccccccccHHHHHHHHH-cCCC
Confidence            4 56545 899999999999999999888887765 579999999999999999999999999999999999975 8999


Q ss_pred             cCceeEEeecc-ccccCCccchHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhhcCCCChhHHHHHHHHHHhcCCCcc
Q psy907          314 PRISRFILPIG-TINMDGSALYLPCAVIFLAQINNIYLGFGEIFTIGLACLFTSFSSAAIPSAAIVLVVMLCSTINAPID  392 (472)
Q Consensus       314 ~~ia~fvlPlG-tin~~G~al~~~i~~iFiaq~~Gi~ls~~~~~~iil~~~l~S~g~agVPgg~~v~~~~vl~~lGlP~e  392 (472)
                      |++++|++|+| |+||||+|+|.+++++|++|+||++++++|++.++++++++|+|++||||++++++.++++.+|+|.|
T Consensus       285 ~~i~~fvlPlgatin~~G~a~~~~~~~~f~a~~~g~~l~~~~~~~~~~~~~l~s~g~~gvPg~~~v~~~~vl~~~glP~~  364 (405)
T d2nwwa1         285 EGIYSFTLPLGATINMDGTALYQGVCTFFIANALGSHLTVGQQLTIVLTAVLASIGTAGVPGAGAIMLAMVLHSVGLPLT  364 (405)
T ss_dssp             TTTHHHHTTTTSSSCCHHHHHHHHHHHHHHHHHHTCCCCSSTTHHHHHHHHHHHHTTSSCTTHHHHHHHHHHHHHTCCTT
T ss_pred             ccccceecccchheecccchhHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHcCCCCc
Confidence            99999999999 99999999999999999999999999999999999999999999999999999999999999999964


Q ss_pred             ------hhHHHHhhHhhhhccchhhhhhhhHHHHHHHHHhh
Q psy907          393 ------DVTLLFAVDWFVDRFRTPNNLLGDCYAVAVVEHLS  427 (472)
Q Consensus       393 ------~i~li~avd~llD~~rT~~NV~gd~~~a~iv~~~~  427 (472)
                            ++++++++||++||+||++||+||+++|.+|+|||
T Consensus       365 ~~~~~~~i~li~~id~l~D~~rT~~Nv~gd~~~a~iv~k~e  405 (405)
T d2nwwa1         365 DPNVAAAYAMILGIDAILDMGRTMVNVTGDLTGTAIVAKTE  405 (405)
T ss_dssp             SHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             cchhhhHHHHHHhHHhhcchhHHHHhHHHhhHHHheeecCC
Confidence                  68999999999999999999999999999999975
>d2nwwa1 f.49.1.1 (A:12-416) Proton glutamate symport protein {Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure