Psyllid ID: psy9084

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100---
Protein Sequence
MGPDEALCGWPWISRRMFPTFQVRLFNLDPDAEYMLMMDFVPVDDKRYRYAFHRQIGSLVSLPRFHVVLLSPESNSASATSPFKTFLFPETMFTAVTAYQNHR
Secondary Structure (PSIPRED)
cccccccccccccccccccEEEEEEEcccccccEEEEEEEEEccccEEEEEEEEEEEEEcccccEEEEEcccccccccccccEEEEEccccEEEEEEcccccc
Secondary Structure Prediction (SSPRO)
ccccHHHccccHccEccccccEEEEEccccccEEEEEEEEEEEEEEEEEEEEEccEEEcccccEEEEEEEcccccccccccccEEEEcHHHcEEEEcccccHH
Coil and Loop (DISEMBL)
mgpdealcgwpwisrrmfptFQVRlfnldpdaeYMLMmdfvpvddkryRYAFHRQIGslvslprfhvvllspesnsasatspfktflfpeTMFTAVTAYQNHR
Flexible Loop (DISEMBL)
mgpdealcgwpwisrrmFPTFQVRLFNLDPDAEYMLMMDFVPVDDKRYRYAFHRQIGSLVSLPRFHVVLLSPESNSASATSPFKTFLFPETMFTAVTAYQNHR
Low Complexity Region (SEG)
MGPDEALCGWPWISRRMFPTFQVRLFNLDPDAEYMLMMDFVPVDDKRYRYAFHRQIGSLVSLPRFHVVLLSPESNSASATSPFKTFLFPETMFTAVTAYQNHR
Disordered region (IsUnstruct)
*****ALCGWPWISRRMFPTFQVRLFNLDPDAEYMLMMDFVPVDDKRYRYAFHRQIGSLVSLPRFHVVLLS***********FKTFLFPETMFTAVTAY****
Disordered Region (DISOPRED)
******LCGWPWISRRMFPTFQVRLFNLDPDAEYMLMMDFVPVDDKRYRYAFHRQIGSLVSLPRF*****************FKTFLFPETMFTAVTAYQNH*
Disordered Region (DISEMBL)
MGPDEALCGWPWISRRMFPTFQVRLFNLDPDAEYMLMMDFVPVDDKRYRYAFHRQIGSLVSLPRFHVVLLSPESNSASATSPFKTFLFPETMFTAVTAYQNHR
Disordered Region (DISPRO)
**PDEALCGWPWISRRMFPTFQVRLFNLDPDAEYMLMMDFVPVDDKRYRYAFHRQIGSLVSLPRFHVVLLSPESNSASATSPFKTFLFPETMFTAVTAYQN**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGPDEALCGWPWISRRMFPTFQVRLFNLDPDAEYMLMMDFVPVDDKRYRYAFHRQIGSLVSLPRFHVVLLSPESNSASATSPFKTFLFPETMFTAVTAYQNHR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

No hits with e-value below 0.001 by BLAST

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	103
UNIPROTKB|D2HEY4	248	PANDA_009394 "Putative unchara	0.378	0.157	0.846	3.6e-27
UNIPROTKB|F1PEL4	363	TBX1 "Uncharacterized protein"	0.378	0.107	0.846	3.7e-26
UNIPROTKB|O43435	398	TBX1 "T-box transcription fact	0.378	0.097	0.846	6.4e-26
UNIPROTKB|F7HZN4	400	TBX1 "Uncharacterized protein"	0.378	0.097	0.846	6.6e-26
MGI|MGI:98493	479	Tbx1 "T-box 1" [Mus musculus (	0.378	0.081	0.846	1.6e-25
RGD|1307734	480	Tbx1 "T-box 1" [Rattus norvegi	0.378	0.081	0.846	1.6e-25
UNIPROTKB|F1NJ72	184	TBX10 "Uncharacterized protein	0.378	0.211	0.794	1.7e-25
ZFIN|ZDB-GENE-030805-5	468	tbx1 "T-box 1" [Danio rerio (t	0.378	0.083	0.794	1e-24
RGD|1584144	344	Tbx10 "T-box 10" [Rattus norve	0.378	0.113	0.692	3.4e-23
MGI|MGI:1261436	385	Tbx10 "T-box 10" [Mus musculus	0.378	0.101	0.692	3.6e-23

UNIPROTKB|D2HEY4 PANDA_009394 "Putative uncharacterized protein" [Ailuropoda melanoleuca (taxid:9646)]

 Score = 187 (70.9 bits), Expect = 3.6e-27, Sum P(2) = 3.6e-27
 Identities = 33/39 (84%), Positives = 37/39 (94%)

Query:    15 RRMFPTFQVRLFNLDPDAEYMLMMDFVPVDDKRYRYAFH 53
             RRMFPTFQV+LF +DP A+YML+MDFVPVDDKRYRYAFH
Sbjct:    46 RRMFPTFQVKLFGMDPMADYMLLMDFVPVDDKRYRYAFH 84

GO:0001525 "angiogenesis" evidence=ISS

GO:0001568 "blood vessel development" evidence=ISS

GO:0001708 "cell fate specification" evidence=ISS

GO:0001755 "neural crest cell migration" evidence=ISS

GO:0001945 "lymph vessel development" evidence=ISS

GO:0003007 "heart morphogenesis" evidence=ISS

GO:0003151 "outflow tract morphogenesis" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=ISS

GO:0007368 "determination of left/right symmetry" evidence=ISS

GO:0007389 "pattern specification process" evidence=ISS

GO:0007498 "mesoderm development" evidence=ISS

GO:0007507 "heart development" evidence=ISS

GO:0007517 "muscle organ development" evidence=ISS

GO:0007605 "sensory perception of sound" evidence=ISS

GO:0008283 "cell proliferation" evidence=ISS

GO:0008284 "positive regulation of cell proliferation" evidence=ISS

GO:0009952 "anterior/posterior pattern specification" evidence=ISS

GO:0021644 "vagus nerve morphogenesis" evidence=ISS

GO:0030855 "epithelial cell differentiation" evidence=ISS

GO:0030878 "thyroid gland development" evidence=ISS

GO:0035176 "social behavior" evidence=ISS

GO:0035909 "aorta morphogenesis" evidence=ISS

GO:0042471 "ear morphogenesis" evidence=ISS

GO:0042472 "inner ear morphogenesis" evidence=ISS

GO:0042473 "outer ear morphogenesis" evidence=ISS

GO:0042474 "middle ear morphogenesis" evidence=ISS

GO:0042475 "odontogenesis of dentin-containing tooth" evidence=ISS

GO:0042693 "muscle cell fate commitment" evidence=ISS

GO:0045596 "negative regulation of cell differentiation" evidence=ISS

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=ISS

GO:0048514 "blood vessel morphogenesis" evidence=ISS

GO:0048538 "thymus development" evidence=ISS

GO:0048644 "muscle organ morphogenesis" evidence=ISS

GO:0048701 "embryonic cranial skeleton morphogenesis" evidence=ISS

GO:0048752 "semicircular canal morphogenesis" evidence=ISS

GO:0048844 "artery morphogenesis" evidence=ISS

GO:0050679 "positive regulation of epithelial cell proliferation" evidence=ISS

GO:0060037 "pharyngeal system development" evidence=ISS

GO:0060325 "face morphogenesis" evidence=ISS

GO:0060415 "muscle tissue morphogenesis" evidence=ISS

GO:0060982 "coronary artery morphogenesis" evidence=ISS

GO:0070166 "enamel mineralization" evidence=ISS

GO:0090103 "cochlea morphogenesis" evidence=ISS

GO:2000027 "regulation of organ morphogenesis" evidence=ISS

UNIPROTKB|F1PEL4 TBX1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 187 (70.9 bits), Expect = 3.7e-26, Sum P(2) = 3.7e-26
 Identities = 33/39 (84%), Positives = 37/39 (94%)

Query:    15 RRMFPTFQVRLFNLDPDAEYMLMMDFVPVDDKRYRYAFH 53
             RRMFPTFQV+LF +DP A+YML+MDFVPVDDKRYRYAFH
Sbjct:     3 RRMFPTFQVKLFGMDPMADYMLLMDFVPVDDKRYRYAFH 41

GO:0042474 "middle ear morphogenesis" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:2000027 "regulation of organ morphogenesis" evidence=ISS

GO:0090103 "cochlea morphogenesis" evidence=ISS

GO:0070166 "enamel mineralization" evidence=ISS

GO:0060982 "coronary artery morphogenesis" evidence=ISS

GO:0060415 "muscle tissue morphogenesis" evidence=ISS

GO:0060325 "face morphogenesis" evidence=ISS

GO:0060037 "pharyngeal system development" evidence=ISS

GO:0050679 "positive regulation of epithelial cell proliferation" evidence=ISS

GO:0048844 "artery morphogenesis" evidence=ISS

GO:0048752 "semicircular canal morphogenesis" evidence=ISS

GO:0048701 "embryonic cranial skeleton morphogenesis" evidence=ISS

GO:0048644 "muscle organ morphogenesis" evidence=ISS

GO:0048538 "thymus development" evidence=ISS

GO:0048514 "blood vessel morphogenesis" evidence=ISS

GO:0045596 "negative regulation of cell differentiation" evidence=ISS

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=ISS

GO:0042693 "muscle cell fate commitment" evidence=ISS

GO:0042475 "odontogenesis of dentin-containing tooth" evidence=ISS

GO:0042473 "outer ear morphogenesis" evidence=ISS

GO:0042472 "inner ear morphogenesis" evidence=ISS

GO:0042471 "ear morphogenesis" evidence=ISS

GO:0035909 "aorta morphogenesis" evidence=ISS

GO:0035176 "social behavior" evidence=ISS

GO:0030878 "thyroid gland development" evidence=ISS

GO:0030855 "epithelial cell differentiation" evidence=ISS

GO:0021644 "vagus nerve morphogenesis" evidence=ISS

GO:0009952 "anterior/posterior pattern specification" evidence=ISS

GO:0008284 "positive regulation of cell proliferation" evidence=ISS

GO:0007605 "sensory perception of sound" evidence=ISS

GO:0008283 "cell proliferation" evidence=ISS

GO:0007517 "muscle organ development" evidence=ISS

GO:0007507 "heart development" evidence=ISS

GO:0007498 "mesoderm development" evidence=ISS

GO:0007389 "pattern specification process" evidence=ISS

GO:0007368 "determination of left/right symmetry" evidence=ISS

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=ISS

GO:0003151 "outflow tract morphogenesis" evidence=ISS

GO:0003007 "heart morphogenesis" evidence=ISS

GO:0001945 "lymph vessel development" evidence=ISS

GO:0001755 "neural crest cell migration" evidence=ISS

GO:0001708 "cell fate specification" evidence=ISS

GO:0001568 "blood vessel development" evidence=ISS

GO:0001525 "angiogenesis" evidence=ISS

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

UNIPROTKB|O43435 TBX1 "T-box transcription factor TBX1" [Homo sapiens (taxid:9606)]

 Score = 187 (70.9 bits), Expect = 6.4e-26, Sum P(2) = 6.4e-26
 Identities = 33/39 (84%), Positives = 37/39 (94%)

Query:    15 RRMFPTFQVRLFNLDPDAEYMLMMDFVPVDDKRYRYAFH 53
             RRMFPTFQV+LF +DP A+YML+MDFVPVDDKRYRYAFH
Sbjct:   137 RRMFPTFQVKLFGMDPMADYMLLMDFVPVDDKRYRYAFH 175

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0001974 "blood vessel remodeling" evidence=IEA

GO:0071600 "otic vesicle morphogenesis" evidence=IEA

GO:0072513 "positive regulation of secondary heart field cardioblast proliferation" evidence=IEA

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=ISS;NAS

GO:0043565 "sequence-specific DNA binding" evidence=IDA

GO:0060037 "pharyngeal system development" evidence=IMP

GO:0060017 "parathyroid gland development" evidence=IMP

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0007507 "heart development" evidence=IMP

GO:0048538 "thymus development" evidence=IMP

GO:0060023 "soft palate development" evidence=IMP

GO:0048703 "embryonic viscerocranium morphogenesis" evidence=IMP

GO:0042803 "protein homodimerization activity" evidence=IDA

GO:0007517 "muscle organ development" evidence=ISS

GO:0008283 "cell proliferation" evidence=ISS

GO:0007605 "sensory perception of sound" evidence=ISS

GO:0008284 "positive regulation of cell proliferation" evidence=ISS

GO:0009952 "anterior/posterior pattern specification" evidence=ISS

GO:0021644 "vagus nerve morphogenesis" evidence=ISS

GO:0030855 "epithelial cell differentiation" evidence=ISS

GO:0030878 "thyroid gland development" evidence=ISS

GO:0035176 "social behavior" evidence=ISS

GO:0035909 "aorta morphogenesis" evidence=ISS

GO:0042471 "ear morphogenesis" evidence=ISS

GO:0042472 "inner ear morphogenesis" evidence=ISS

GO:0042473 "outer ear morphogenesis" evidence=ISS

GO:0042474 "middle ear morphogenesis" evidence=ISS

GO:0042475 "odontogenesis of dentin-containing tooth" evidence=ISS

GO:0042693 "muscle cell fate commitment" evidence=ISS

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=ISS;IDA

GO:0045596 "negative regulation of cell differentiation" evidence=ISS

GO:0048514 "blood vessel morphogenesis" evidence=ISS

GO:0048644 "muscle organ morphogenesis" evidence=ISS

GO:0048701 "embryonic cranial skeleton morphogenesis" evidence=ISS

GO:0048752 "semicircular canal morphogenesis" evidence=ISS

GO:0048844 "artery morphogenesis" evidence=ISS

GO:0050679 "positive regulation of epithelial cell proliferation" evidence=ISS

GO:0043587 "tongue morphogenesis" evidence=ISS

GO:0071300 "cellular response to retinoic acid" evidence=ISS

GO:0002053 "positive regulation of mesenchymal cell proliferation" evidence=ISS

GO:2001054 "negative regulation of mesenchymal cell apoptotic process" evidence=ISS

GO:0048384 "retinoic acid receptor signaling pathway" evidence=ISS

GO:0097152 "mesenchymal cell apoptotic process" evidence=ISS

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=ISS

GO:0001934 "positive regulation of protein phosphorylation" evidence=ISS

GO:0003148 "outflow tract septum morphogenesis" evidence=ISS

GO:0043410 "positive regulation of MAPK cascade" evidence=ISS

GO:0044344 "cellular response to fibroblast growth factor stimulus" evidence=ISS

GO:0003677 "DNA binding" evidence=IDA

GO:0046983 "protein dimerization activity" evidence=TAS

GO:0001525 "angiogenesis" evidence=ISS

GO:0001568 "blood vessel development" evidence=ISS

GO:0001708 "cell fate specification" evidence=ISS

GO:0001755 "neural crest cell migration" evidence=ISS

GO:0001945 "lymph vessel development" evidence=ISS

GO:0003007 "heart morphogenesis" evidence=ISS

GO:0003151 "outflow tract morphogenesis" evidence=ISS

GO:0007368 "determination of left/right symmetry" evidence=ISS

GO:0007389 "pattern specification process" evidence=ISS

GO:0007498 "mesoderm development" evidence=ISS

GO:0060325 "face morphogenesis" evidence=ISS

GO:0060415 "muscle tissue morphogenesis" evidence=ISS

GO:0060982 "coronary artery morphogenesis" evidence=ISS

GO:0070166 "enamel mineralization" evidence=ISS

GO:0090103 "cochlea morphogenesis" evidence=ISS

GO:2000027 "regulation of organ morphogenesis" evidence=ISS

GO:2001037 "positive regulation of tongue muscle cell differentiation" evidence=ISS

UNIPROTKB|F7HZN4 TBX1 "Uncharacterized protein" [Callithrix jacchus (taxid:9483)]

 Score = 187 (70.9 bits), Expect = 6.6e-26, Sum P(2) = 6.6e-26
 Identities = 33/39 (84%), Positives = 37/39 (94%)

Query:    15 RRMFPTFQVRLFNLDPDAEYMLMMDFVPVDDKRYRYAFH 53
             RRMFPTFQV+LF +DP A+YML+MDFVPVDDKRYRYAFH
Sbjct:   141 RRMFPTFQVKLFGMDPMADYMLLMDFVPVDDKRYRYAFH 179

GO:0001525 "angiogenesis" evidence=ISS

GO:0001568 "blood vessel development" evidence=ISS

GO:0001708 "cell fate specification" evidence=ISS

GO:0001755 "neural crest cell migration" evidence=ISS

GO:0001934 "positive regulation of protein phosphorylation" evidence=ISS

GO:0001945 "lymph vessel development" evidence=ISS

GO:0002053 "positive regulation of mesenchymal cell proliferation" evidence=ISS

GO:0003007 "heart morphogenesis" evidence=ISS

GO:0003148 "outflow tract septum morphogenesis" evidence=ISS

GO:0003151 "outflow tract morphogenesis" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=ISS

GO:0007368 "determination of left/right symmetry" evidence=ISS

GO:0007389 "pattern specification process" evidence=ISS

GO:0007498 "mesoderm development" evidence=ISS

GO:0007507 "heart development" evidence=ISS

GO:0007517 "muscle organ development" evidence=ISS

GO:0007605 "sensory perception of sound" evidence=ISS

GO:0008283 "cell proliferation" evidence=ISS

GO:0008284 "positive regulation of cell proliferation" evidence=ISS

GO:0009952 "anterior/posterior pattern specification" evidence=ISS

GO:0021644 "vagus nerve morphogenesis" evidence=ISS

GO:0030855 "epithelial cell differentiation" evidence=ISS

GO:0030878 "thyroid gland development" evidence=ISS

GO:0035176 "social behavior" evidence=ISS

GO:0035909 "aorta morphogenesis" evidence=ISS

GO:0042471 "ear morphogenesis" evidence=ISS

GO:0042472 "inner ear morphogenesis" evidence=ISS

GO:0042473 "outer ear morphogenesis" evidence=ISS

GO:0042474 "middle ear morphogenesis" evidence=ISS

GO:0042475 "odontogenesis of dentin-containing tooth" evidence=ISS

GO:0042693 "muscle cell fate commitment" evidence=ISS

GO:0043410 "positive regulation of MAPK cascade" evidence=ISS

GO:0043587 "tongue morphogenesis" evidence=ISS

GO:0044344 "cellular response to fibroblast growth factor stimulus" evidence=ISS

GO:0045596 "negative regulation of cell differentiation" evidence=ISS

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=ISS

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=ISS

GO:0048384 "retinoic acid receptor signaling pathway" evidence=ISS

GO:0048514 "blood vessel morphogenesis" evidence=ISS

GO:0048538 "thymus development" evidence=ISS

GO:0048644 "muscle organ morphogenesis" evidence=ISS

GO:0048701 "embryonic cranial skeleton morphogenesis" evidence=ISS

GO:0048703 "embryonic viscerocranium morphogenesis" evidence=ISS

GO:0048752 "semicircular canal morphogenesis" evidence=ISS

GO:0048844 "artery morphogenesis" evidence=ISS

GO:0050679 "positive regulation of epithelial cell proliferation" evidence=ISS

GO:0060017 "parathyroid gland development" evidence=ISS

GO:0060023 "soft palate development" evidence=ISS

GO:0060037 "pharyngeal system development" evidence=ISS

GO:0060325 "face morphogenesis" evidence=ISS

GO:0060415 "muscle tissue morphogenesis" evidence=ISS

GO:0060982 "coronary artery morphogenesis" evidence=ISS

GO:0070166 "enamel mineralization" evidence=ISS

GO:0071300 "cellular response to retinoic acid" evidence=ISS

GO:0090103 "cochlea morphogenesis" evidence=ISS

GO:0097152 "mesenchymal cell apoptotic process" evidence=ISS

GO:2000027 "regulation of organ morphogenesis" evidence=ISS

GO:2001037 "positive regulation of tongue muscle cell differentiation" evidence=ISS

GO:2001054 "negative regulation of mesenchymal cell apoptotic process" evidence=ISS

MGI|MGI:98493 Tbx1 "T-box 1" [Mus musculus (taxid:10090)]

 Score = 187 (70.9 bits), Expect = 1.6e-25, Sum P(2) = 1.6e-25
 Identities = 33/39 (84%), Positives = 37/39 (94%)

Query:    15 RRMFPTFQVRLFNLDPDAEYMLMMDFVPVDDKRYRYAFH 53
             RRMFPTFQV+LF +DP A+YML+MDFVPVDDKRYRYAFH
Sbjct:   126 RRMFPTFQVKLFGMDPMADYMLLMDFVPVDDKRYRYAFH 164

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IMP

GO:0001525 "angiogenesis" evidence=IMP

GO:0001568 "blood vessel development" evidence=IGI;IMP

GO:0001569 "patterning of blood vessels" evidence=TAS

GO:0001708 "cell fate specification" evidence=IGI;IMP

GO:0001755 "neural crest cell migration" evidence=IMP

GO:0001934 "positive regulation of protein phosphorylation" evidence=IMP

GO:0001945 "lymph vessel development" evidence=IMP

GO:0001974 "blood vessel remodeling" evidence=IGI

GO:0002053 "positive regulation of mesenchymal cell proliferation" evidence=IMP

GO:0003007 "heart morphogenesis" evidence=IMP

GO:0003148 "outflow tract septum morphogenesis" evidence=IMP

GO:0003151 "outflow tract morphogenesis" evidence=IGI;IMP

GO:0003677 "DNA binding" evidence=ISO

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=ISO;ISS;IDA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=IGI

GO:0007368 "determination of left/right symmetry" evidence=IMP

GO:0007389 "pattern specification process" evidence=IGI;IMP

GO:0007498 "mesoderm development" evidence=IMP

GO:0007507 "heart development" evidence=ISO;IGI;ISS;IMP

GO:0007517 "muscle organ development" evidence=IMP

GO:0007605 "sensory perception of sound" evidence=IMP

GO:0008283 "cell proliferation" evidence=IDA

GO:0008284 "positive regulation of cell proliferation" evidence=IMP

GO:0009952 "anterior/posterior pattern specification" evidence=IGI;IMP

GO:0021644 "vagus nerve morphogenesis" evidence=IMP

GO:0030855 "epithelial cell differentiation" evidence=IMP

GO:0030878 "thyroid gland development" evidence=IGI;IMP

GO:0035176 "social behavior" evidence=IMP

GO:0035909 "aorta morphogenesis" evidence=IGI;IMP

GO:0042471 "ear morphogenesis" evidence=IMP

GO:0042472 "inner ear morphogenesis" evidence=IMP

GO:0042473 "outer ear morphogenesis" evidence=IMP

GO:0042474 "middle ear morphogenesis" evidence=IMP

GO:0042475 "odontogenesis of dentin-containing tooth" evidence=IMP

GO:0042693 "muscle cell fate commitment" evidence=IMP

GO:0042803 "protein homodimerization activity" evidence=ISO;ISS

GO:0043410 "positive regulation of MAPK cascade" evidence=IMP

GO:0043565 "sequence-specific DNA binding" evidence=ISO;ISS

GO:0043587 "tongue morphogenesis" evidence=IMP

GO:0044344 "cellular response to fibroblast growth factor stimulus" evidence=IMP

GO:0045596 "negative regulation of cell differentiation" evidence=IMP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=ISO;IDA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IGI;IDA;IMP

GO:0048384 "retinoic acid receptor signaling pathway" evidence=IMP

GO:0048514 "blood vessel morphogenesis" evidence=IMP

GO:0048538 "thymus development" evidence=ISO;ISS;IMP

GO:0048644 "muscle organ morphogenesis" evidence=IGI

GO:0048701 "embryonic cranial skeleton morphogenesis" evidence=IMP

GO:0048703 "embryonic viscerocranium morphogenesis" evidence=ISO;ISS

GO:0048752 "semicircular canal morphogenesis" evidence=IGI

GO:0048844 "artery morphogenesis" evidence=IGI;IMP

GO:0050679 "positive regulation of epithelial cell proliferation" evidence=IMP

GO:0060017 "parathyroid gland development" evidence=ISO;ISS

GO:0060023 "soft palate development" evidence=ISO;ISS

GO:0060037 "pharyngeal system development" evidence=IGI;ISO;ISS;IMP

GO:0060325 "face morphogenesis" evidence=IMP

GO:0060415 "muscle tissue morphogenesis" evidence=IMP

GO:0060982 "coronary artery morphogenesis" evidence=IMP;TAS

GO:0070166 "enamel mineralization" evidence=IMP

GO:0071600 "otic vesicle morphogenesis" evidence=IMP

GO:0072513 "positive regulation of secondary heart field cardioblast proliferation" evidence=IDA

GO:0090103 "cochlea morphogenesis" evidence=IGI;IMP

GO:0097152 "mesenchymal cell apoptotic process" evidence=IMP

GO:2000027 "regulation of organ morphogenesis" evidence=IGI;IMP

GO:2001037 "positive regulation of tongue muscle cell differentiation" evidence=IMP

GO:2001054 "negative regulation of mesenchymal cell apoptotic process" evidence=IGI

RGD|1307734 Tbx1 "T-box 1" [Rattus norvegicus (taxid:10116)]

 Score = 187 (70.9 bits), Expect = 1.6e-25, Sum P(2) = 1.6e-25
 Identities = 33/39 (84%), Positives = 37/39 (94%)

Query:    15 RRMFPTFQVRLFNLDPDAEYMLMMDFVPVDDKRYRYAFH 53
             RRMFPTFQV+LF +DP A+YML+MDFVPVDDKRYRYAFH
Sbjct:   127 RRMFPTFQVKLFGMDPMADYMLLMDFVPVDDKRYRYAFH 165

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=ISO

GO:0001525 "angiogenesis" evidence=ISO;ISS

GO:0001568 "blood vessel development" evidence=ISO;ISS

GO:0001708 "cell fate specification" evidence=ISO;ISS

GO:0001755 "neural crest cell migration" evidence=ISO;ISS

GO:0001934 "positive regulation of protein phosphorylation" evidence=ISO;ISS

GO:0001945 "lymph vessel development" evidence=ISO;ISS

GO:0001974 "blood vessel remodeling" evidence=IEA;ISO

GO:0002053 "positive regulation of mesenchymal cell proliferation" evidence=ISO;ISS

GO:0003007 "heart morphogenesis" evidence=ISO;ISS

GO:0003148 "outflow tract septum morphogenesis" evidence=ISO;ISS

GO:0003151 "outflow tract morphogenesis" evidence=ISO;ISS

GO:0003674 "molecular_function" evidence=ND

GO:0003677 "DNA binding" evidence=ISO

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISO

GO:0005575 "cellular_component" evidence=ND

GO:0005634 "nucleus" evidence=ISO;ISS

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=ISO;ISS

GO:0007368 "determination of left/right symmetry" evidence=ISO;ISS

GO:0007389 "pattern specification process" evidence=ISO;ISS

GO:0007498 "mesoderm development" evidence=ISO;ISS

GO:0007507 "heart development" evidence=ISO;ISS

GO:0007517 "muscle organ development" evidence=ISO;ISS

GO:0007605 "sensory perception of sound" evidence=ISO;ISS

GO:0008150 "biological_process" evidence=ND

GO:0008283 "cell proliferation" evidence=ISO;ISS

GO:0008284 "positive regulation of cell proliferation" evidence=ISO;ISS

GO:0009952 "anterior/posterior pattern specification" evidence=ISO;ISS

GO:0021644 "vagus nerve morphogenesis" evidence=ISO;ISS

GO:0030855 "epithelial cell differentiation" evidence=ISO;ISS

GO:0030878 "thyroid gland development" evidence=ISO;ISS

GO:0035176 "social behavior" evidence=ISO;ISS

GO:0035909 "aorta morphogenesis" evidence=ISO;ISS

GO:0042471 "ear morphogenesis" evidence=ISO;ISS

GO:0042472 "inner ear morphogenesis" evidence=ISO;ISS

GO:0042473 "outer ear morphogenesis" evidence=ISO;ISS

GO:0042474 "middle ear morphogenesis" evidence=ISO;ISS

GO:0042475 "odontogenesis of dentin-containing tooth" evidence=ISO;ISS

GO:0042693 "muscle cell fate commitment" evidence=ISO;ISS

GO:0042803 "protein homodimerization activity" evidence=IEA;ISO

GO:0043410 "positive regulation of MAPK cascade" evidence=ISO;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA;ISO

GO:0043587 "tongue morphogenesis" evidence=ISO;ISS

GO:0044344 "cellular response to fibroblast growth factor stimulus" evidence=ISO;ISS

GO:0045596 "negative regulation of cell differentiation" evidence=ISO;ISS

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=ISO;ISS

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=ISO;ISS

GO:0048384 "retinoic acid receptor signaling pathway" evidence=ISO;ISS

GO:0048514 "blood vessel morphogenesis" evidence=ISO;ISS

GO:0048538 "thymus development" evidence=ISO;ISS

GO:0048644 "muscle organ morphogenesis" evidence=ISO;ISS

GO:0048701 "embryonic cranial skeleton morphogenesis" evidence=ISO;ISS

GO:0048703 "embryonic viscerocranium morphogenesis" evidence=ISO;ISS

GO:0048752 "semicircular canal morphogenesis" evidence=ISO;ISS

GO:0048844 "artery morphogenesis" evidence=ISO;ISS

GO:0050679 "positive regulation of epithelial cell proliferation" evidence=ISO;ISS

GO:0060017 "parathyroid gland development" evidence=ISO;ISS

GO:0060023 "soft palate development" evidence=ISO;ISS

GO:0060037 "pharyngeal system development" evidence=ISO;ISS

GO:0060325 "face morphogenesis" evidence=ISO;ISS

GO:0060415 "muscle tissue morphogenesis" evidence=ISO;ISS

GO:0060982 "coronary artery morphogenesis" evidence=ISO;ISS

GO:0070166 "enamel mineralization" evidence=ISO;ISS

GO:0071300 "cellular response to retinoic acid" evidence=ISS

GO:0071600 "otic vesicle morphogenesis" evidence=IEA;ISO

GO:0072513 "positive regulation of secondary heart field cardioblast proliferation" evidence=IEA;ISO

GO:0090103 "cochlea morphogenesis" evidence=ISO;ISS

GO:0097152 "mesenchymal cell apoptotic process" evidence=ISO;ISS

GO:2000027 "regulation of organ morphogenesis" evidence=ISO;ISS

GO:2001037 "positive regulation of tongue muscle cell differentiation" evidence=ISO;ISS

GO:2001054 "negative regulation of mesenchymal cell apoptotic process" evidence=ISO;ISS

UNIPROTKB|F1NJ72 TBX10 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 173 (66.0 bits), Expect = 1.7e-25, Sum P(2) = 1.7e-25
 Identities = 31/39 (79%), Positives = 36/39 (92%)

Query:    15 RRMFPTFQVRLFNLDPDAEYMLMMDFVPVDDKRYRYAFH 53
             RRMFPTFQV+L  LDP A+Y+L+MDFVP+DDKRYRYAFH
Sbjct:    19 RRMFPTFQVKLSGLDPLADYVLLMDFVPLDDKRYRYAFH 57

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

ZFIN|ZDB-GENE-030805-5 tbx1 "T-box 1" [Danio rerio (taxid:7955)]

 Score = 182 (69.1 bits), Expect = 1.0e-24, Sum P(2) = 1.0e-24
 Identities = 31/39 (79%), Positives = 37/39 (94%)

Query:    15 RRMFPTFQVRLFNLDPDAEYMLMMDFVPVDDKRYRYAFH 53
             RRMFPTFQV++F +DP A+YML+MDF+PVDDKRYRYAFH
Sbjct:   142 RRMFPTFQVKIFGMDPMADYMLLMDFLPVDDKRYRYAFH 180

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0060037 "pharyngeal system development" evidence=ISS;IMP

GO:0003143 "embryonic heart tube morphogenesis" evidence=IMP

GO:0001755 "neural crest cell migration" evidence=IMP

GO:0043583 "ear development" evidence=IMP

GO:0048752 "semicircular canal morphogenesis" evidence=IMP

GO:0043282 "pharyngeal muscle development" evidence=IMP

GO:0007507 "heart development" evidence=ISS

GO:0043565 "sequence-specific DNA binding" evidence=ISS

GO:0042803 "protein homodimerization activity" evidence=ISS

GO:0060017 "parathyroid gland development" evidence=ISS

GO:0060023 "soft palate development" evidence=ISS

GO:0048538 "thymus development" evidence=ISS

GO:0048703 "embryonic viscerocranium morphogenesis" evidence=ISS

GO:0003677 "DNA binding" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0060536 "cartilage morphogenesis" evidence=IMP

GO:0042471 "ear morphogenesis" evidence=IMP

RGD|1584144 Tbx10 "T-box 10" [Rattus norvegicus (taxid:10116)]

 Score = 159 (61.0 bits), Expect = 3.4e-23, Sum P(2) = 3.4e-23
 Identities = 27/39 (69%), Positives = 34/39 (87%)

Query:    15 RRMFPTFQVRLFNLDPDAEYMLMMDFVPVDDKRYRYAFH 53
             RRMFPTFQV++  +D  A+Y L+MDF+P+DDKRYRYAFH
Sbjct:    51 RRMFPTFQVKIVGMDTLADYALLMDFIPLDDKRYRYAFH 89

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

MGI|MGI:1261436 Tbx10 "T-box 10" [Mus musculus (taxid:10090)]

 Score = 160 (61.4 bits), Expect = 3.6e-23, Sum P(2) = 3.6e-23
 Identities = 27/39 (69%), Positives = 34/39 (87%)

Query:    15 RRMFPTFQVRLFNLDPDAEYMLMMDFVPVDDKRYRYAFH 53
             RRMFPTFQV++  +D  A+Y L+MDF+P+DDKRYRYAFH
Sbjct:    92 RRMFPTFQVKILGMDTLADYALLMDFIPLDDKRYRYAFH 130

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	103
pfam00907	182	pfam00907, T-box, T-box	4e-25
cd00182	188	cd00182, TBOX, T-box DNA binding domain of the T-b	4e-25
smart00425	190	smart00425, TBOX, Domain first found in the mice T	5e-21

>gnl|CDD|216184 pfam00907, T-box, T-box

 Score = 92.3 bits (230), Expect = 4e-25
 Identities = 45/141 (31%), Positives = 61/141 (43%), Gaps = 55/141 (39%)

Query: 15  RRMFPTFQVRLFNLDPDAEYMLMMDFVPVDDKRYRY------------------------ 50
           RRMFPT +V +  LDP+A Y +++DFVPVDD RY++                        
Sbjct: 27  RRMFPTLKVSVSGLDPNALYSVLLDFVPVDDHRYKFHNGEWVVAGKAEPHPPPRVYIHPD 86

Query: 51  -------------AFHR---------QIGSLV--SL----PRFHVVLLSPESNSASATSP 82
                        +F +           G ++  S+    PR H+V +  ES S      
Sbjct: 87  SPATGAHWMKQPVSFDKVKLTNNKLDGNGHIILNSMHKYQPRLHIVRVDDESPSQRT--- 143

Query: 83  FKTFLFPETMFTAVTAYQNHR 103
            +TF FPET F AVTAYQN  
Sbjct: 144 VRTFSFPETQFIAVTAYQNEE 164

The T-box encodes a 180 amino acid domain that binds to DNA. Genes encoding T-box proteins are found in a wide range of animals, but not in other kingdoms such as plants. Family members are all thought to bind to the DNA consensus sequence TCACACCT. they are found exclusively in the nucleus, and perform DNA-binding and transcriptional activation/repression roles. They are generally required for development of the specific tissues they are expressed in, and mutations in T-box genes are implicated in human conditions such as DiGeorge syndrome and X-linked cleft palate, which feature malformations. Length = 182

>gnl|CDD|238106 cd00182, TBOX, T-box DNA binding domain of the T-box family of transcriptional regulators

 Score = 92.7 bits (231), Expect = 4e-25
 Identities = 46/141 (32%), Positives = 58/141 (41%), Gaps = 54/141 (38%)

Query: 15  RRMFPTFQVRLFNLDPDAEYMLMMDFVPVDDKRY-------------------RYAFH-- 53
           RRMFPT +V++  LDP+A Y ++MD VPVDD RY                   R   H  
Sbjct: 29  RRMFPTLKVKVSGLDPNALYSVLMDLVPVDDHRYKFSGGKWVVAGKAEPHLPPRVYVHPD 88

Query: 54  ---------RQIGS------------------LVSL----PRFHVVLLSPESNSASATSP 82
                    +Q  S                  L S+    PR H+V +   S  +     
Sbjct: 89  SPATGAHWMKQPVSFDKLKLTNNTLDNNGHIILNSMHKYQPRLHIVEVDDSSPFS--WRL 146

Query: 83  FKTFLFPETMFTAVTAYQNHR 103
            +TF FPET F AVTAYQN  
Sbjct: 147 VQTFSFPETEFIAVTAYQNQE 167

The T-box family is an ancient group that appears to play a critical role in development in all animal species. These genes were uncovered on the basis of similarity to the DNA binding domain of murine Brachyury (T) gene product, the defining feature of the family. Common features shared by T-box family members are DNA-binding and transcriptional regulatory activity, a role in development and conserved expression patterns, most of the known genes in all species being expressed in mesoderm or mesoderm precursors. Length = 188

>gnl|CDD|214656 smart00425, TBOX, Domain first found in the mice T locus (Brachyury) protein

 Score = 81.9 bits (203), Expect = 5e-21
 Identities = 43/141 (30%), Positives = 62/141 (43%), Gaps = 52/141 (36%)

Query: 15  RRMFPTFQVRLFNLDPDAEYMLMMDFVPVDDKRYRY------------------------ 50
           RRMFPT + ++  LDP+A Y ++MD VPVDDKRY++                        
Sbjct: 28  RRMFPTLKYKVSGLDPNALYSVLMDLVPVDDKRYKFNNGKWVVAGKAEPHMPSRVYVHPD 87

Query: 51  -------------AFHR------------QIGSLV-SLPRFHVVLLSPESNSAS--ATSP 82
                        +F +             +  ++ S+ ++   L   E +  S    S 
Sbjct: 88  SPATGAHWMKQPVSFDKVKLTNNQSDKNGHLQIILNSMHKYQPRLHIVEVDDISKEILSQ 147

Query: 83  FKTFLFPETMFTAVTAYQNHR 103
           FKTF+FPET F AVTAYQN +
Sbjct: 148 FKTFVFPETQFIAVTAYQNQK 168

Length = 190

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	103
KOG3586|consensus	437		100.0
cd00182	188	TBOX T-box DNA binding domain of the T-box family	100.0
smart00425	190	TBOX Domain first found in the mice T locus (Brach	100.0
KOG3585|consensus	328		99.98
PF00907	184	T-box: T-box; InterPro: IPR001699 Transcription fa	99.98
PF04775	126	Bile_Hydr_Trans: Acyl-CoA thioester hydrolase/BAAT	83.47

>KOG3586|consensus

Probab=100.00  E-value=3.8e-41  Score=268.44  Aligned_cols=99  Identities=55%  Similarity=0.860  Sum_probs=89.8

Q ss_pred             CceeeecccCCcCCCccceEEEeCCCCCCCeeEEEEEEEccCCceeeeecc-----------------------------
Q psy9084           4 DEALCGWPWISRRMFPTFQVRLFNLDPDAEYMLMMDFVPVDDKRYRYAFHR-----------------------------   54 (103)
Q Consensus         4 ~~~~~~~t~~GRrmFP~l~~~vsGL~p~~~Y~v~v~~~~~d~~ryry~~~~-----------------------------   54 (103)
                      .||||+| |+||||||+++|+++||||.+.|.|+||++|+|++||||.+|+                             
T Consensus        97 GTEMIIT-KsGRRMFPTvrV~~~GldP~a~Y~vlmDvVPvD~KRYRYayH~S~WlvAGkADp~~p~R~yvHPDSP~sGe~  175 (437)
T KOG3586|consen   97 GTEMIIT-KSGRRMFPTVRVKFSGLDPMADYYVLMDVVPVDSKRYRYAYHSSSWLVAGKADPAPPPRVYVHPDSPASGEQ  175 (437)
T ss_pred             CceEEEe-cccccccceEEEEEecCCcccceEEEEeEEecccceeeeeecccceeeecCCCCCCCCceeeCCCCCCCHHH
Confidence            4789875 8999999999999999999999999999999999999999986                             


Q ss_pred             ---ceeEeec----------------------CCeeEEEEcCCCCCCC---CCCCCeEEEEcCCceEEEcCCCCCCC
Q psy9084          55 ---QIGSLVS----------------------LPRFHVVLLSPESNSA---SATSPFKTFLFPETMFTAVTAYQNHR  103 (103)
Q Consensus        55 ---~~vsF~k----------------------qPrlhiv~~~~~~~~~---~~~~~~~tf~FpeT~FiAVTAYQN~~  103 (103)
                         |+|||||                      |||+|||+.++..+..   ...+.++||+||||+|+|||||||++
T Consensus       176 wmkqiVSFdK~KLTNNelD~nGHIILNSMHkYQPRvHvV~~~~~~~s~~~~~~~e~~kTF~FpET~FtAVTAYQNq~  252 (437)
T KOG3586|consen  176 WMKQIVSFDKLKLTNNELDDNGHIILNSMHKYQPRVHVVYLDPGNDSNKYVEKNEGFKTFVFPETVFTAVTAYQNQR  252 (437)
T ss_pred             HHHhhhchheeeccccccccCCcEeeecccccCCceEEEEecCCCCccccccccccceeEeccceeEEEEeecccce
Confidence               8999999                      9999999998754322   34578999999999999999999986

>cd00182 TBOX T-box DNA binding domain of the T-box family of transcriptional regulators

Probab=100.00  E-value=9.6e-39  Score=235.49  Aligned_cols=97  Identities=43%  Similarity=0.644  Sum_probs=87.2

Q ss_pred             CceeeecccCCcCCCccceEEEeCCCCCCCeeEEEEEEEccCCceeeeecc-----------------------------
Q psy9084           4 DEALCGWPWISRRMFPTFQVRLFNLDPDAEYMLMMDFVPVDDKRYRYAFHR-----------------------------   54 (103)
Q Consensus         4 ~~~~~~~t~~GRrmFP~l~~~vsGL~p~~~Y~v~v~~~~~d~~ryry~~~~-----------------------------   54 (103)
                      .+|||+| |+||||||.++++|+||||++.|.|+||++++|++||||.+++                             
T Consensus        19 ~tEMIIT-k~GRrmFP~l~~~vsGLdp~~~Y~v~l~~~~~D~~Rykf~~~~W~~~g~~e~~~~~~~~~HPdsp~tG~~wM   97 (188)
T cd00182          19 GTEMIIT-KSGRRMFPTLKVKVSGLDPNALYSVLMDLVPVDDHRYKFSGGKWVVAGKAEPHLPPRVYVHPDSPATGAHWM   97 (188)
T ss_pred             CcEEEEe-cCCcccccceEEEEeCCCcccceEEEEEEEEcCCcEEEecCCcEeEcCCCCCCCCCceEECCCCCcCHHHHh
Confidence            5789988 6899999999999999999999999999999999999998754                             


Q ss_pred             -ceeEeec----------------------CCeeEEEEcCCCCCCCCCCCCeEEEEcCCceEEEcCCCCCCC
Q psy9084          55 -QIGSLVS----------------------LPRFHVVLLSPESNSASATSPFKTFLFPETMFTAVTAYQNHR  103 (103)
Q Consensus        55 -~~vsF~k----------------------qPrlhiv~~~~~~~~~~~~~~~~tf~FpeT~FiAVTAYQN~~  103 (103)
                       ++|||+|                      ||||||+++++....  .....++|+||||+|||||||||++
T Consensus        98 ~~~isF~kvKlTN~~~~~~~~i~L~SmhKY~Prl~I~~~~~~~~~--~~~~~~~f~F~eT~FiAVTaYqN~~  167 (188)
T cd00182          98 KQPVSFDKLKLTNNTLDNNGHIILNSMHKYQPRLHIVEVDDSSPF--SWRLVQTFSFPETEFIAVTAYQNQE  167 (188)
T ss_pred             hCccccchhhcccCCCCCCCEEEEeccceEEeEEEEEEcCCCccc--cccccEEEECCCeEEEEEEeecCHh
Confidence             6899998                      999999999765432  3567899999999999999999975

The T-box family is an ancient group that appears to play a critical role in development in all animal species. These genes were uncovered on the basis of similarity to the DNA binding domain of murine Brachyury (T) gene product, the defining feature of the family. Common features shared by T-box family members are DNA-binding and transcriptional regulatory activity, a role in development and conserved expression patterns, most of the known genes in all species being expressed in mesoderm or mesoderm precursors.

>smart00425 TBOX Domain first found in the mice T locus (Brachyury) protein

Probab=100.00  E-value=8.6e-37  Score=225.30  Aligned_cols=97  Identities=46%  Similarity=0.731  Sum_probs=85.7

Q ss_pred             CceeeecccCCcCCCccceEEEeCCCCCCCeeEEEEEEEccCCceeeeecc-----------------------------
Q psy9084           4 DEALCGWPWISRRMFPTFQVRLFNLDPDAEYMLMMDFVPVDDKRYRYAFHR-----------------------------   54 (103)
Q Consensus         4 ~~~~~~~t~~GRrmFP~l~~~vsGL~p~~~Y~v~v~~~~~d~~ryry~~~~-----------------------------   54 (103)
                      .+|||+|+ +||||||.++++|+||||++.|.|+|+++++|++||||.+++                             
T Consensus        18 ~tEMIVTk-~GRrmFP~l~~~vsGLdp~~~Y~v~l~~~~~d~~rykf~~~~W~~~g~~e~~~~~~~~~Hpdsp~tG~~wM   96 (190)
T smart00425       18 GTEMIVTK-SGRRMFPTLKYKVSGLDPNALYSVLMDLVPVDDKRYKFNNGKWVVAGKAEPHMPSRVYVHPDSPATGAHWM   96 (190)
T ss_pred             CcEEEEec-CCceeCCeeEEEEeCCCccCcEEEEEEEEEccCcEEEecCCcEEEcCCCCCCCCCceEECCCCccCHHHHh
Confidence            37898876 599999999999999999999999999999999999998764                             


Q ss_pred             -ceeEeec------------------------CCeeEEEEcCCCCCCCCCCCCeEEEEcCCceEEEcCCCCCCC
Q psy9084          55 -QIGSLVS------------------------LPRFHVVLLSPESNSASATSPFKTFLFPETMFTAVTAYQNHR  103 (103)
Q Consensus        55 -~~vsF~k------------------------qPrlhiv~~~~~~~~~~~~~~~~tf~FpeT~FiAVTAYQN~~  103 (103)
                       ++|+|+|                        ||||||+++++....  ....+++|+||||+|||||||||++
T Consensus        97 ~~~v~F~kvKlTN~~~~~~~~i~i~L~SmhkY~P~l~I~~~~~~~~~--~~~~~~~f~F~eT~FiaVTaYqN~~  168 (190)
T smart00425       97 KQPVSFDKVKLTNNQSDKNGHLQIILNSMHKYQPRLHIVEVDDISKE--ILSQFKTFVFPETQFIAVTAYQNQK  168 (190)
T ss_pred             hCcccccccceeccccccCCcEeeeeccCceEeeEEEEEEeCCcccc--cccceeEEECCceEEEEEeeecccc
Confidence             6788887                        899999999764433  3466789999999999999999985

>KOG3585|consensus

Probab=99.98  E-value=5.1e-33  Score=219.09  Aligned_cols=96  Identities=36%  Similarity=0.647  Sum_probs=84.5

Q ss_pred             ceeeecccCCcCCCccceEEEeCCCCCCCeeEEEEEEEccCCceeeeecc------------------------------
Q psy9084           5 EALCGWPWISRRMFPTFQVRLFNLDPDAEYMLMMDFVPVDDKRYRYAFHR------------------------------   54 (103)
Q Consensus         5 ~~~~~~t~~GRrmFP~l~~~vsGL~p~~~Y~v~v~~~~~d~~ryry~~~~------------------------------   54 (103)
                      +||| +||+||||||.++|+|+||||++.|+|+|+++++|++||||.+++                              
T Consensus        43 ~Emi-itK~GRrmFP~l~~~VsGLdp~s~Y~i~l~~~~~D~~rykf~ng~W~p~gk~e~~~~~~~~~Hpd~p~TG~~WM~  121 (328)
T KOG3585|consen   43 TEMI-VTKRGRRMFPALKFKVSGLDPNSLYSILLELVPIDDKRYKFNNGKWVPSGKAEPHVPSKVYVHPDGPATGAHWMS  121 (328)
T ss_pred             cEEE-EecCCceeccccceeeccCCcccceEEEEEEEEccCceeeecCCeeccCCCCCCCCCceEEEecCCccchHHHhc
Confidence            4554 569999999999999999999999999999999999999999864                              


Q ss_pred             ceeEeec-----------------------CCeeEEEEcCCCCCCCCCCCCeEEEEcCCceEEEcCCCCCCC
Q psy9084          55 QIGSLVS-----------------------LPRFHVVLLSPESNSASATSPFKTFLFPETMFTAVTAYQNHR  103 (103)
Q Consensus        55 ~~vsF~k-----------------------qPrlhiv~~~~~~~~~~~~~~~~tf~FpeT~FiAVTAYQN~~  103 (103)
                      ++|+|+|                       ||||||+++++.  .......+++|.||||+|||||||||++
T Consensus       122 ~~V~F~kvKITN~~~~~~~~~i~l~SmHKY~P~l~i~~~~~~--~~~~~~~~~~~~F~eT~FIaVTaYQn~~  191 (328)
T KOG3585|consen  122 EPVSFDKVKITNNKSDKKGKVIILNSMHKYQPVLHIVELDAS--LISPEISVQSFKFPETQFIAVTAYQNQE  191 (328)
T ss_pred             CCcccceeEeeccccccCCceEeeecccceeeeEEEEEcccc--cCCCccceeEEEcccceeEEeeeeecce
Confidence            6789988                       899999999722  1235688999999999999999999974

>PF00907 T-box: T-box; InterPro: IPR001699 Transcription factors of the T-box family are required both for early cell-fate decisions, such as those necessary for formation of the basic vertebrate body plan, and for differentiation and organogenesis []

Probab=99.98  E-value=1.2e-32  Score=200.33  Aligned_cols=96  Identities=35%  Similarity=0.593  Sum_probs=75.2

Q ss_pred             ceeeecccCCcCCCccceEEEeCCCCCCCeeEEEEEEEccCCceeeeecc------------------------------
Q psy9084           5 EALCGWPWISRRMFPTFQVRLFNLDPDAEYMLMMDFVPVDDKRYRYAFHR------------------------------   54 (103)
Q Consensus         5 ~~~~~~t~~GRrmFP~l~~~vsGL~p~~~Y~v~v~~~~~d~~ryry~~~~------------------------------   54 (103)
                      .|||+ |++||+|||.|+|+|+||+|++.|.|.|+++++|+++|||.+++                              
T Consensus        18 ~EMiv-t~~GR~~FP~l~y~vsGL~p~~~Y~i~l~~~~~d~~~~k~~~~~W~~~~~~~~~~~~~~~~h~~~~~~G~~WM~   96 (184)
T PF00907_consen   18 NEMIV-TKNGRRMFPTLEYSVSGLDPDSLYSISLHFERVDNKRYKFSNGKWVPSGKAEPPMPPRVVIHPDGPQTGSEWMK   96 (184)
T ss_dssp             -EEE--BTT-EE-SS-EEEEEESS-TTSEEEEEEEEEESCSEEEEEETTEEEEEEE---B-----EE-TT-SEEHHHHHH
T ss_pred             CEEEE-eecccccccccEEEecCCCCCcceEEEEEEEEecCceeecccccccccccccccccceEEEEecCcCCHHHhCc
Confidence            57777 58999999999999999999999999999999999999998753                              


Q ss_pred             ceeEeec----------------------CCeeEEEEcCCCCCCCCCCCCeEEEEcCCceEEEcCCCCCC
Q psy9084          55 QIGSLVS----------------------LPRFHVVLLSPESNSASATSPFKTFLFPETMFTAVTAYQNH  102 (103)
Q Consensus        55 ~~vsF~k----------------------qPrlhiv~~~~~~~~~~~~~~~~tf~FpeT~FiAVTAYQN~  102 (103)
                      ++|+|++                      +|+|||+++++..... ......+|+||||+|||||||||+
T Consensus        97 ~~v~F~~vkitn~~~~~~~~I~L~s~hkY~Pvl~I~~~~~~~~~~-~~~~~~~f~f~~t~FIaVT~Yqn~  165 (184)
T PF00907_consen   97 NGVSFDKVKITNNKEDKKGNIFLNSMHKYQPVLHIYEVNSNGSPS-PNQPVHEFSFPETEFIAVTAYQNE  165 (184)
T ss_dssp             S-EEETT-EEESSTT-TST-EE--TTEEEEEEEEEEECTTTSCCC-SCSSEEEEE-GGG-EEEESS-SSH
T ss_pred             ccEEeehhhhhCCCCCcccceEEccccEEEEEEEEEEcCCccccc-cccceEEeecCcCeEEeecccchh
Confidence            5788887                      8999999997654321 246799999999999999999996

The T-box is defined as the minimal region within the T-box protein that is both necessary and sufficient for sequence-specific DNA binding, all members of the family so far examined bind to the DNA consensus sequence TCACACCT. The T-box is a relatively large DNA-binding domain, generally comprising about a third of the entire protein (17-26 kDa). These genes were uncovered on the basis of similarity to the DNA binding domain [] of Mus musculus (Mouse) Brachyury (T) gene product, which similarity is the defining feature of the family. The Brachyury gene is named for its phenotype, which was identified 70 years ago as a mutant mouse strain with a short blunted tail. The gene, and its paralogues, have become a well-studied model for the family, and hence much of what is known about the T-box family is derived from the murine Brachyury gene. Consistent with its nuclear location, Brachyury protein has a sequence-specific DNA-binding activity and can act as a transcriptional regulator []. Homozygous mutants for the gene undergo extensive developmental anomalies, thus rendering the mutation lethal []. The postulated role of Brachyury is as a transcription factor, regulating the specification and differentiation of posterior mesoderm during gastrulation in a dose-dependent manner []. T-box proteins tend to be expressed in specific organs or cell types, especially during development, and they are generally required for the development of those tissues, for example, Brachyury is expressed in posterior mesoderm and in the developing notochord, and it is required for the formation of these cells in mice []. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1H6F_B 4A04_A 1XBR_B 2X6V_B 2X6U_A.

>PF04775 Bile_Hydr_Trans: Acyl-CoA thioester hydrolase/BAAT N-terminal region; InterPro: IPR006862 This entry presents the N-termini of acyl-CoA thioester hydrolase and bile acid-CoA:amino acid N-acetyltransferase (BAAT) []

Probab=83.47  E-value=1.8  Score=29.81  Aligned_cols=30  Identities=17%  Similarity=0.295  Sum_probs=20.0

Q ss_pred             ceEEEeCCCCCCCeeEEEEEEEccCCceee
Q psy9084          21 FQVRLFNLDPDAEYMLMMDFVPVDDKRYRY   50 (103)
Q Consensus        21 l~~~vsGL~p~~~Y~v~v~~~~~d~~ryry   50 (103)
                      ++++|+||.|.+.+.|.+.+.--....|+-
T Consensus         5 ~~I~v~GL~p~~~vtl~a~~~~~~g~~w~S   34 (126)
T PF04775_consen    5 VDIRVSGLPPGQEVTLRARLTDDNGVQWQS   34 (126)
T ss_dssp             -EEEEES--TT-EEEEEEEEE-TTS-EEEE
T ss_pred             eEEEEeCCCCCCEEEEEEEEEeCCCCEEEE
Confidence            689999999999999999998655556654

This region is not thought to contain the active site of either enzyme. Thioesterase isoforms have been identified in peroxisomes, cytoplasm and mitochondria, where they are thought to have distinct functions in lipid metabolism []. For example, in peroxisomes, the hydrolase acts on bile-CoA esters [].; GO: 0016290 palmitoyl-CoA hydrolase activity, 0006629 lipid metabolic process; PDB: 3HLK_B 3K2I_B.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	103
1h6f_A	193	T-box transcription factor TBX3; transcription fac	4e-13
2x6u_A	203	T-box transcription factor TBX5; developmental pro	5e-12
1xbr_A	184	Protein (T protein); complex (transcription factor	8e-12
4a04_A	203	T-box transcription factor TBX1; transcription, T-	1e-09
4a04_A	203	T-box transcription factor TBX1; transcription, T-	2e-05

>1h6f_A T-box transcription factor TBX3; transcription factor, TBX3, T-box transcription factor; 1.7A {Homo sapiens} SCOP: b.2.5.4 Length = 193

 Score = 61.0 bits (147), Expect = 4e-13
 Identities = 40/141 (28%), Positives = 55/141 (39%), Gaps = 50/141 (35%)

Query: 13  ISRRMFPTFQVRLFNLDPDAEYMLMMDFVPVDDKRYRY---------------------- 50
             RRMFP F+VR   LD  A+Y+L+MD +  DD RY++                      
Sbjct: 30  SGRRMFPPFKVRCSGLDKKAKYILLMDIIAADDCRYKFHNSRWMVAGKADPEMPKRMYIH 89

Query: 51  ---------------AFHR-----------QIGSLVSLPRFHVVLLSPESNSAS--ATSP 82
                           FH+               L S+ ++        +N       S 
Sbjct: 90  PDSPATGEQWMSKVVTFHKLKLTNNISDKHGFTILNSMHKYQPRFHIVRANDILKLPYST 149

Query: 83  FKTFLFPETMFTAVTAYQNHR 103
           F+T+LFPET F AVTAYQN +
Sbjct: 150 FRTYLFPETEFIAVTAYQNDK 170

>2x6u_A T-box transcription factor TBX5; developmental protein, DNA-binding, HOLT-ORAM-syndrome, IG-fold, nuclear protein, repressor; HET: PE4; 1.90A {Homo sapiens} PDB: 2x6v_A* Length = 203

 Score = 58.2 bits (140), Expect = 5e-12
 Identities = 35/142 (24%), Positives = 58/142 (40%), Gaps = 52/142 (36%)

Query: 14  SRRMFPTFQVRLFNLDPDAEYMLMMDFVPVDDKRYRY----------------------- 50
            RRMFP+++V++  L+P  +Y+L+MD VP DD RY++                       
Sbjct: 32  GRRMFPSYKVKVTGLNPKTKYILLMDIVPADDHRYKFADNKWSVTGKAEPAMPGRLYVHP 91

Query: 51  --------------AFHR-----------QIGSLVSLPRFHVVLLSPESNSASATSPFK- 84
                         +F +               L S+ ++   L   +++  +       
Sbjct: 92  DSPATGAHWMRQLVSFQKLKLTNNHLDPFGHIILNSMHKYQPRLHIVKADENNGFGSKNT 151

Query: 85  ---TFLFPETMFTAVTAYQNHR 103
              T +FPET F AVT+YQNH+
Sbjct: 152 AFCTHVFPETAFIAVTSYQNHK 173

>1xbr_A Protein (T protein); complex (transcription factor/DNA), transcription factor, DNA-binding protein, transcription/DNA complex; HET: DNA; 2.50A {Xenopus laevis} SCOP: b.2.5.4 Length = 184

 Score = 57.4 bits (138), Expect = 8e-12
 Identities = 34/135 (25%), Positives = 48/135 (35%), Gaps = 45/135 (33%)

Query: 14  SRRMFPTFQVRLFNLDPDAEYMLMMDFVPVDDKRYRY----------AFHRQIGSLVSLP 63
            RRMFP  +V +  LDP+A Y +++DFV  D+ R++Y             +    +   P
Sbjct: 28  GRRMFPVLKVSMSGLDPNAMYTVLLDFVAADNHRWKYVNGEWVPGGKPEPQAPSCVYIHP 87

Query: 64  R--------------FHVVLLSPESNSA---------------------SATSPFKTFLF 88
                          F  V L+ + N                              +  F
Sbjct: 88  DSPNFGAHWMKDPVSFSKVKLTNKMNGGGQIMLNSLHKYEPRIHIVRVGGTQRMITSHSF 147

Query: 89  PETMFTAVTAYQNHR 103
           PET F AVTAYQN  
Sbjct: 148 PETQFIAVTAYQNEE 162

>4a04_A T-box transcription factor TBX1; transcription, T-box proteins; HET: DNA; 2.58A {Homo sapiens} Length = 203

 Score = 51.8 bits (123), Expect = 1e-09
 Identities = 33/43 (76%), Positives = 37/43 (86%)

Query: 13 ISRRMFPTFQVRLFNLDPDAEYMLMMDFVPVDDKRYRYAFHRQ 55
            RRMFPTFQV+LF +DP A+YML+MDFVPVDDKRYRYAFH  
Sbjct: 41 AGRRMFPTFQVKLFGMDPMADYMLLMDFVPVDDKRYRYAFHSS 83

>4a04_A T-box transcription factor TBX1; transcription, T-box proteins; HET: DNA; 2.58A {Homo sapiens} Length = 203

 Score = 40.2 bits (93), Expect = 2e-05
 Identities = 25/42 (59%), Positives = 29/42 (69%), Gaps = 1/42 (2%)

Query: 63  PRFHVV-LLSPESNSASATSPFKTFLFPETMFTAVTAYQNHR 103
           PRFHVV +   + +   A   FKTF+F ET FTAVTAYQNHR
Sbjct: 145 PRFHVVYVDPRKDSEKYAEENFKTFVFEETRFTAVTAYQNHR 186

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	103
2x6u_A	203	T-box transcription factor TBX5; developmental pro	100.0
4a04_A	203	T-box transcription factor TBX1; transcription, T-	100.0
1xbr_A	184	Protein (T protein); complex (transcription factor	100.0
1h6f_A	193	T-box transcription factor TBX3; transcription fac	100.0

>2x6u_A T-box transcription factor TBX5; developmental protein, DNA-binding, HOLT-ORAM-syndrome, IG-fold, nuclear protein, repressor; HET: PE4; 1.90A {Homo sapiens} PDB: 2x6v_A*

Probab=100.00  E-value=3.8e-40  Score=244.16  Aligned_cols=99  Identities=40%  Similarity=0.730  Sum_probs=88.5

Q ss_pred             CceeeecccCCcCCCccceEEEeCCCCCCCeeEEEEEEEccCCceeeeecc-----------------------------
Q psy9084           4 DEALCGWPWISRRMFPTFQVRLFNLDPDAEYMLMMDFVPVDDKRYRYAFHR-----------------------------   54 (103)
Q Consensus         4 ~~~~~~~t~~GRrmFP~l~~~vsGL~p~~~Y~v~v~~~~~d~~ryry~~~~-----------------------------   54 (103)
                      .+|||+| |+||||||.++++|+||||++.|.|+||++++|++||||++++                             
T Consensus        23 ~tEMIiT-k~GRrmFP~l~~~vsGLdp~~~Y~v~l~~~~~D~~rykf~~~~W~~~gkae~~~p~r~y~Hpdsp~tG~~WM  101 (203)
T 2x6u_A           23 GTEMIIT-KAGRRMFPSYKVKVTGLNPKTKYILLMDIVPADDHRYKFADNKWSVTGKAEPAMPGRLYVHPDSPATGAHWM  101 (203)
T ss_dssp             CCEEECB-SSCEECSSCCEEEEESCCSSSEEEEEEEEEEEEEEEEEEETTEEEEEEECCCC---CCEECTTCSEEHHHHH
T ss_pred             CceEEEe-cCCcccCceeEEEEeCCCcccCeEEEEEEEEccCceeEEeCCcEeECcccCCCCCcceEECCCCccchHHHh
Confidence            4788887 7999999999999999999999999999999999999998754                             


Q ss_pred             -ceeEeec----------------------CCeeEEEEcCCCCCCCCCCCCeEEEEcCCceEEEcCCCCCCC
Q psy9084          55 -QIGSLVS----------------------LPRFHVVLLSPESNSASATSPFKTFLFPETMFTAVTAYQNHR  103 (103)
Q Consensus        55 -~~vsF~k----------------------qPrlhiv~~~~~~~~~~~~~~~~tf~FpeT~FiAVTAYQN~~  103 (103)
                       ++|||+|                      ||||||+++++..........+++|+||||+|||||||||++
T Consensus       102 ~~~VsF~klKLTNn~~d~~g~I~L~SmHKYqPrlhIv~~~~~~~~~~~~~~~~tf~FpeT~FiAVTaYQN~~  173 (203)
T 2x6u_A          102 RQLVSFQKLKLTNNHLDPFGHIILNSMHKYQPRLHIVKADENNGFGSKNTAFCTHVFPETAFIAVTSYQNHK  173 (203)
T ss_dssp             HSCEECTTCEEECCTTCSSCCEECCTTEEEEEEEEEEECCTTSCSSSSCCCEEEECCGGGCEEEESSCCSHH
T ss_pred             hCCceeeeeeceeccCCccceEeecCCceEEEEEEEEEeCCccccCcCccceEEEEcCCcEEEEEeeecchh
Confidence             7899998                      899999999876544344578899999999999999999973

>4a04_A T-box transcription factor TBX1; transcription, T-box proteins; HET: DNA; 2.58A {Homo sapiens}

Probab=100.00  E-value=3.6e-39  Score=238.87  Aligned_cols=99  Identities=63%  Similarity=0.973  Sum_probs=84.1

Q ss_pred             CceeeecccCCcCCCccceEEEeCCCCCCCeeEEEEEEEccCCceeeee--cc---------------------------
Q psy9084           4 DEALCGWPWISRRMFPTFQVRLFNLDPDAEYMLMMDFVPVDDKRYRYAF--HR---------------------------   54 (103)
Q Consensus         4 ~~~~~~~t~~GRrmFP~l~~~vsGL~p~~~Y~v~v~~~~~d~~ryry~~--~~---------------------------   54 (103)
                      .+|||+| |+||||||.|+++|+||||+++|.|+||++++|++||||..  ++                           
T Consensus        33 ~tEMIIT-K~GRrmFP~l~~~vsGLdp~~~Y~~~l~~~~~D~~ryry~~~~~~W~~~gkae~~~p~r~~~Hpdsp~tG~~  111 (203)
T 4a04_A           33 GTEMIVT-KAGRRMFPTFQVKLFGMDPMADYMLLMDFVPVDDKRYRYAFHSSSWLVAGKADPATPGRVHYHPDSPAKGAQ  111 (203)
T ss_dssp             CCEEECC-SSCEECSSCEEEEEESCCTTSEEEEEEEEEESCSEEEEEETTTTEEEEEEECCCCCCCCCCBCTTCSEEHHH
T ss_pred             CCeEEEE-eCCcccCCceEEEEeCCCcccCcEEEEEEEEccCCeEEecccCCCEeECCccCCCCCCceEEcCCCCcCHHH
Confidence            4789988 79999999999999999999999999999999999999963  21                           


Q ss_pred             ---ceeEeec----------------------CCeeEEEEcCCCCCC-CCCCCCeEEEEcCCceEEEcCCCCCCC
Q psy9084          55 ---QIGSLVS----------------------LPRFHVVLLSPESNS-ASATSPFKTFLFPETMFTAVTAYQNHR  103 (103)
Q Consensus        55 ---~~vsF~k----------------------qPrlhiv~~~~~~~~-~~~~~~~~tf~FpeT~FiAVTAYQN~~  103 (103)
                         ++|||+|                      ||||||+++++.... ......+++|+||||+|||||||||++
T Consensus       112 WM~~~VsF~klKLTNn~~d~~g~I~L~SmHKYqPrlhIv~~~~~~~~~~~~~~~~~tf~FpeT~FiAVTaYQN~~  186 (203)
T 4a04_A          112 WMKQIVSFDKLKLTNNLLDDNGHIILNSMHRYQPRFHVVYVDPRKDSEKYAEENFKTFVFEETRFTAVTAYQNHR  186 (203)
T ss_dssp             HHHSCEEECSCEEECCTTCCSSCEECCTTCEEEEEEEEEECCCC--------CCEEEEECGGGCEEEESSCCCHH
T ss_pred             HhhCcceeeeeecccCccCcCCEEEEeeccccccEEEEEEcCCCcccccccCCceEEEECCCcEEEeeCccCCHH
Confidence               7899998                      899999999865432 234578999999999999999999974

>1xbr_A Protein (T protein); complex (transcription factor/DNA), transcription factor, DNA-binding protein, transcription/DNA complex; HET: DNA; 2.50A {Xenopus laevis} SCOP: b.2.5.4

Probab=100.00  E-value=5.4e-39  Score=234.96  Aligned_cols=93  Identities=37%  Similarity=0.597  Sum_probs=84.2

Q ss_pred             CceeeecccCCcCCCccceEEEeCCCCCCCeeEEEEEEEccCCceeeeecc-----------------------------
Q psy9084           4 DEALCGWPWISRRMFPTFQVRLFNLDPDAEYMLMMDFVPVDDKRYRYAFHR-----------------------------   54 (103)
Q Consensus         4 ~~~~~~~t~~GRrmFP~l~~~vsGL~p~~~Y~v~v~~~~~d~~ryry~~~~-----------------------------   54 (103)
                      .+|||+| |+||||||.++++|+||||++.|.|+||++++|++||||++++                             
T Consensus        19 ~tEMIiT-k~GRrmFP~l~~~v~GLdp~~~Y~v~l~~~~~D~~ryk~~~~~W~~~gkae~~~p~r~~~Hpdsp~~G~~WM   97 (184)
T 1xbr_A           19 TNEMIVT-KNGRRMFPVLKVSMSGLDPNAMYTVLLDFVAADNHRWKYVNGEWVPGGKPEPQAPSCVYIHPDSPNFGAHWM   97 (184)
T ss_dssp             CCEEECB-TTCEECSSCCEEEEECSCTTSEEEEEEEEEESSSCEEEEETTEEEEESSCCCCCCCCCEECTTCSEEHHHHH
T ss_pred             CcEEEEe-cCCcccCCccEEEEeCCCcccCeEEEEEEEEccCceEEEECCcEEEcCccCCCCCcceEECCCCchhHHHHh
Confidence            4688887 7899999999999999999999999999999999999998753                             


Q ss_pred             -ceeEeec---------------------CCeeEEEEcCCCCCCCCCCCCeEEEEcCCceEEEcCCCCCCC
Q psy9084          55 -QIGSLVS---------------------LPRFHVVLLSPESNSASATSPFKTFLFPETMFTAVTAYQNHR  103 (103)
Q Consensus        55 -~~vsF~k---------------------qPrlhiv~~~~~~~~~~~~~~~~tf~FpeT~FiAVTAYQN~~  103 (103)
                       ++|||+|                     ||||||+++++.      ...+++|+||||+|||||||||++
T Consensus        98 ~~~VsF~klKlTNn~~~~~~i~L~SmHKY~PrlhI~~~~~~------~~~~~tf~FpeT~FiAVTaYQN~~  162 (184)
T 1xbr_A           98 KDPVSFSKVKLTNKMNGGGQIMLNSLHKYEPRIHIVRVGGT------QRMITSHSFPETQFIAVTAYQNEE  162 (184)
T ss_dssp             HSCEECTTCEEESSCCTTTCEECCSSSEEEEEEEEEEESSS------SCCEEEEECGGGCEEEESSCCCHH
T ss_pred             hCCceeccccccccCCCCCeEEeccCceEEEEEEEEEeCCC------cceEEEEECCCcEEEEEeccCChh
Confidence             7899998                     899999998653      256899999999999999999963

>1h6f_A T-box transcription factor TBX3; transcription factor, TBX3, T-box transcription factor; 1.7A {Homo sapiens} SCOP: b.2.5.4

Probab=100.00  E-value=4.2e-39  Score=236.98  Aligned_cols=97  Identities=42%  Similarity=0.688  Sum_probs=85.6

Q ss_pred             CceeeecccCCcCCCccceEEEeCCCCCCCeeEEEEEEEccCCceeeeecc-----------------------------
Q psy9084           4 DEALCGWPWISRRMFPTFQVRLFNLDPDAEYMLMMDFVPVDDKRYRYAFHR-----------------------------   54 (103)
Q Consensus         4 ~~~~~~~t~~GRrmFP~l~~~vsGL~p~~~Y~v~v~~~~~d~~ryry~~~~-----------------------------   54 (103)
                      .+|||+| |+||||||.++++|+||||++.|.|+||++++|++||||++++                             
T Consensus        22 ~tEMIiT-k~GRrmFP~l~~~v~GLdp~~~Y~v~l~~~~~d~~rykf~~~~W~~~gkae~~~p~r~~~Hpdsp~tG~~WM  100 (193)
T 1h6f_A           22 GTEMVIT-KSGRRMFPPFKVRCSGLDKKAKYILLMDIIAADDCRYKFHNSRWMVAGKADPEMPKRMYIHPDSPATGEQWM  100 (193)
T ss_dssp             CCEEECC-TTCBCCSSCCEEEEESCCSSSEEEEEEEEEEEEEEEEEEETTEEEEEEECCCCCCCCCEECTTCSEEHHHHT
T ss_pred             cceEEEe-cCCcccCceeEEEEeCCCcccceEEEEEEEEccCceeeccCCcEEECcccCCCCCcceEecCCCcccHHHHh
Confidence            4688877 5999999999999999999999999999999999999998753                             


Q ss_pred             -ceeEeec----------------------CCeeEEEEcCCCCCCCCCCCCeEEEEcCCceEEEcCCCCCCC
Q psy9084          55 -QIGSLVS----------------------LPRFHVVLLSPESNSASATSPFKTFLFPETMFTAVTAYQNHR  103 (103)
Q Consensus        55 -~~vsF~k----------------------qPrlhiv~~~~~~~~~~~~~~~~tf~FpeT~FiAVTAYQN~~  103 (103)
                       ++|||+|                      ||||||+++++...  .+.+.+++|+||||+|||||||||++
T Consensus       101 ~~~VsF~klKLTNn~~~~~~~i~L~SmHKY~PrlhI~~~~~~~~--~~~~~~~tf~FpeT~FiAVTaYQN~~  170 (193)
T 1h6f_A          101 SKVVTFHKLKLTNNISDKHGFTILNSMHKYQPRFHIVRANDILK--LPYSTFRTYLFPETEFIAVTAYQNDK  170 (193)
T ss_dssp             TSCEECTTCCEECCTTCCSCCEECCTTEEEEEEEEEECCSCGGG--GGGSCCEEEECGGGCEEEESSCSCHH
T ss_pred             hCCcceeeeeeeccCCCCCCcEEecCCceEeeEEEEEEcCCccC--CCCcceEEEECCCeEEEEEeccCchh
Confidence             7899998                      89999999865322  23467899999999999999999963

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	103
d1xbra_	184	b.2.5.4 (A:) T domain from Brachyury transcription	6e-22
d1h6fa_	184	b.2.5.4 (A:) T-box protein 3, tbx3 {Human (Homo sa	3e-19

>d1xbra_ b.2.5.4 (A:) T domain from Brachyury transcription factor {African clawed frog (Xenopus laevis) [TaxId: 8355]} Length = 184

class: All beta proteins
fold: Common fold of diphtheria toxin/transcription factors/cytochrome f
superfamily: p53-like transcription factors
family: T-box
domain: T domain from Brachyury transcription factor
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

 Score = 82.6 bits (204), Expect = 6e-22
 Identities = 31/134 (23%), Positives = 46/134 (34%), Gaps = 45/134 (33%)

Query: 15  RRMFPTFQVRLFNLDPDAEYMLMMDFVPVDDKRYRYAFHRQI----GSLVSLPRFHVVLL 70
           RRMFP  +V +  LDP+A Y +++DFV  D+ R++Y     +        +    ++   
Sbjct: 29  RRMFPVLKVSMSGLDPNAMYTVLLDFVAADNHRWKYVNGEWVPGGKPEPQAPSCVYIHPD 88

Query: 71  SPESNSA-----------------------------------------SATSPFKTFLFP 89
           SP   +                                                 +  FP
Sbjct: 89  SPNFGAHWMKDPVSFSKVKLTNKMNGGGQIMLNSLHKYEPRIHIVRVGGTQRMITSHSFP 148

Query: 90  ETMFTAVTAYQNHR 103
           ET F AVTAYQN  
Sbjct: 149 ETQFIAVTAYQNEE 162

>d1h6fa_ b.2.5.4 (A:) T-box protein 3, tbx3 {Human (Homo sapiens) [TaxId: 9606]} Length = 184

class: All beta proteins
fold: Common fold of diphtheria toxin/transcription factors/cytochrome f
superfamily: p53-like transcription factors
family: T-box
domain: T-box protein 3, tbx3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.7 bits (186), Expect = 3e-19
 Identities = 41/139 (29%), Positives = 55/139 (39%), Gaps = 50/139 (35%)

Query: 15  RRMFPTFQVRLFNLDPDAEYMLMMDFVPVDDKRYRYAFHRQI----GSLVSLPRFHVVLL 70
           RRMFP F+VR   LD  A+Y+L+MD +  DD RY++   R +           R ++   
Sbjct: 29  RRMFPPFKVRCSGLDKKAKYILLMDIIAADDCRYKFHNSRWMVAGKADPEMPKRMYIHPD 88

Query: 71  SPES-----------------------------NSASATSP-----------------FK 84
           SP +                             NS     P                 F+
Sbjct: 89  SPATGEQWMSKVVTFHKLKLTNNISDKHGFTILNSMHKYQPRFHIVRANDILKLPYSTFR 148

Query: 85  TFLFPETMFTAVTAYQNHR 103
           T+LFPET F AVTAYQN +
Sbjct: 149 TYLFPETEFIAVTAYQNDK 167

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	103
d1h6fa_	184	T-box protein 3, tbx3 {Human (Homo sapiens) [TaxId	100.0
d1xbra_	184	T domain from Brachyury transcription factor {Afri	100.0
d2b5ib2	104	Interleukin-2 receptor beta chain {Human (Homo sap	91.16

>d1h6fa_ b.2.5.4 (A:) T-box protein 3, tbx3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Common fold of diphtheria toxin/transcription factors/cytochrome f
superfamily: p53-like transcription factors
family: T-box
domain: T-box protein 3, tbx3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.6e-40  Score=238.55  Aligned_cols=97  Identities=42%  Similarity=0.688  Sum_probs=85.7

Q ss_pred             CceeeecccCCcCCCccceEEEeCCCCCCCeeEEEEEEEccCCceeeeecc-----------------------------
Q psy9084           4 DEALCGWPWISRRMFPTFQVRLFNLDPDAEYMLMMDFVPVDDKRYRYAFHR-----------------------------   54 (103)
Q Consensus         4 ~~~~~~~t~~GRrmFP~l~~~vsGL~p~~~Y~v~v~~~~~d~~ryry~~~~-----------------------------   54 (103)
                      .+|||+| |+||||||.|+++|+||||++.|.|+|+++++|++||||.+++                             
T Consensus        19 ~tEMIvT-k~GRrmFP~l~~~vsGLdp~~~Y~v~l~~~~~D~~rykf~~~~W~~~g~~e~~~~~~~~~Hpdsp~tG~~WM   97 (184)
T d1h6fa_          19 GTEMVIT-KSGRRMFPPFKVRCSGLDKKAKYILLMDIIAADDCRYKFHNSRWMVAGKADPEMPKRMYIHPDSPATGEQWM   97 (184)
T ss_dssp             CCEEECC-TTCBCCSSCCEEEEESCCSSSEEEEEEEEEEEEEEEEEEETTEEEEEEECCCCCCCCCEECTTCSEEHHHHT
T ss_pred             CCEEEEe-cCCcccCceeEEEEeccCCCcceEEEEEEEECcCCeeeEeCCcEEEcccCCCCCCCceEECCCCCcCHHHHH
Confidence            3789887 6899999999999999999999999999999999999998653                             


Q ss_pred             -ceeEeec----------------------CCeeEEEEcCCCCCCCCCCCCeEEEEcCCceEEEcCCCCCCC
Q psy9084          55 -QIGSLVS----------------------LPRFHVVLLSPESNSASATSPFKTFLFPETMFTAVTAYQNHR  103 (103)
Q Consensus        55 -~~vsF~k----------------------qPrlhiv~~~~~~~~~~~~~~~~tf~FpeT~FiAVTAYQN~~  103 (103)
                       ++|||+|                      ||||||+++++...  ......++|+||||+|||||||||++
T Consensus        98 ~~~i~F~k~KltN~~~~~~~~i~L~SmhKYqPrl~I~~~~~~~~--~~~~~~~~f~FpeT~FiAVTaYQN~~  167 (184)
T d1h6fa_          98 SKVVTFHKLKLTNNISDKHGFTILNSMHKYQPRFHIVRANDILK--LPYSTFRTYLFPETEFIAVTAYQNDK  167 (184)
T ss_dssp             TSCEECTTCCEECCTTCCSCCEECCTTEEEEEEEEEECCSCGGG--GGGSCCEEEECGGGCEEEESSCSCHH
T ss_pred             hCccccchhhhcCCccCcccchhHhhcccCCCeEEEEEeCCCCC--CCccceEEEECCCeEEEEEccccchh
Confidence             7899999                      89999999875432  23467899999999999999999973

>d1xbra_ b.2.5.4 (A:) T domain from Brachyury transcription factor {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: All beta proteins
fold: Common fold of diphtheria toxin/transcription factors/cytochrome f
superfamily: p53-like transcription factors
family: T-box
domain: T domain from Brachyury transcription factor
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=100.00  E-value=2.1e-39  Score=235.60  Aligned_cols=93  Identities=37%  Similarity=0.598  Sum_probs=84.1

Q ss_pred             CceeeecccCCcCCCccceEEEeCCCCCCCeeEEEEEEEccCCceeeeecc-----------------------------
Q psy9084           4 DEALCGWPWISRRMFPTFQVRLFNLDPDAEYMLMMDFVPVDDKRYRYAFHR-----------------------------   54 (103)
Q Consensus         4 ~~~~~~~t~~GRrmFP~l~~~vsGL~p~~~Y~v~v~~~~~d~~ryry~~~~-----------------------------   54 (103)
                      .+|||+| |+||||||.|+++|+||||++.|.++||++++|++||||.+++                             
T Consensus        19 ~tEMIIT-k~GRrmFP~l~~~vsGLdp~~~Y~v~l~~~~~D~~ryky~~~~W~~~g~~e~~~~~~~~~Hpdsp~tG~~WM   97 (184)
T d1xbra_          19 TNEMIVT-KNGRRMFPVLKVSMSGLDPNAMYTVLLDFVAADNHRWKYVNGEWVPGGKPEPQAPSCVYIHPDSPNFGAHWM   97 (184)
T ss_dssp             CCEEECB-TTCEECSSCCEEEEECSCTTSEEEEEEEEEESSSCEEEEETTEEEEESSCCCCCCCCCEECTTCSEEHHHHH
T ss_pred             CCEEEEe-cCCcccCCceEEEEECCCcCccEEEEEEEEEccCcEEEEECCcEEECCccCCCCCCceEECCCCCcCHHHHh
Confidence            3788877 8999999999999999999999999999999999999998753                             


Q ss_pred             -ceeEeec---------------------CCeeEEEEcCCCCCCCCCCCCeEEEEcCCceEEEcCCCCCCC
Q psy9084          55 -QIGSLVS---------------------LPRFHVVLLSPESNSASATSPFKTFLFPETMFTAVTAYQNHR  103 (103)
Q Consensus        55 -~~vsF~k---------------------qPrlhiv~~~~~~~~~~~~~~~~tf~FpeT~FiAVTAYQN~~  103 (103)
                       ++|||+|                     ||||||+++++..      ....+|+||||+|||||||||++
T Consensus        98 ~~~i~F~klKlTN~~~~~~~i~L~SmHKYqPrl~I~~~~~~~------~~~~~f~FpeT~FiaVTaYQN~~  162 (184)
T d1xbra_          98 KDPVSFSKVKLTNKMNGGGQIMLNSLHKYEPRIHIVRVGGTQ------RMITSHSFPETQFIAVTAYQNEE  162 (184)
T ss_dssp             HSCEECTTCEEESSCCTTTCEECCSSSEEEEEEEEEEESSSS------CCEEEEECGGGCEEEESSCCCHH
T ss_pred             hCccccceeeeeccCCCCCceEEecccceeeeEEEEEeCCCc------cceeEEEcCCeEEEEEeecCcHH
Confidence             7899988                     8999999997532      45789999999999999999973

>d2b5ib2 b.1.2.1 (B:104-207) Interleukin-2 receptor beta chain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Interleukin-2 receptor beta chain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.16  E-value=0.26  Score=28.33  Aligned_cols=44  Identities=16%  Similarity=0.171  Sum_probs=30.9

Q ss_pred             ccceEEEeCCCCCCCeeEEEEEEEccCCceeeeeccceeEeecC
Q psy9084          19 PTFQVRLFNLDPDAEYMLMMDFVPVDDKRYRYAFHRQIGSLVSL   62 (103)
Q Consensus        19 P~l~~~vsGL~p~~~Y~v~v~~~~~d~~ryry~~~~~~vsF~kq   62 (103)
                      ....+.+.||+|...|.+-|......+..-.+..-++++.|.-+
T Consensus        60 ~~~~~~i~~L~p~t~Y~~rVra~~~~g~~g~wS~wS~~v~~~T~  103 (104)
T d2b5ib2          60 KQEWICLETLTPDTQYEFQVRVKPLQGEFTTWSPWSQPLAFRTK  103 (104)
T ss_dssp             CCCEEEECSCCTTCEEEEEEEEEESCCSSCCCCCCCCCEEEECC
T ss_pred             CcEEEEECCCCCCCEEEEEEEEEECCCCCCCCCCCcCCEEEECC
Confidence            35678999999999999999988754432234444466777543