Psyllid ID: psy9094

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-----
MEKRHNYVRKVAEVATTLFITNDKPNIAGLILAGSADFKTELSQSDMFDPVRFSPLKNKNKMGKYFDEISQDTGKYCFGVEDTLRALELGSVETLICWENLDIQRYVLKNHSTSEDRVLHLTPEQEKDKSHFTDKETGVELELVECQPLLEWLANNYKSFGATLEIITDKSQEGSQFVRGFGGIG
cHHHHHHHHHHHHHHHHcccccccccccEEEEEccccHHHHHHcccccccccccHHHHHHHHHHHHHHHHHccccEEEcHHHHHHHHHcccccEEEEEcccccEEEEEEccccccEEEEEEcccccccccccccccccccEEEEEcccHHHHHHHHHHHcccEEEEEcccccHHHHHHHHccccc
cHHHHHHHHHHHHHHHHHHccccccccEEEEEEcccccHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHccccEEEcHHHHHHHHHccccEEEEEEEcccEEEEEEEccccccEEEEEEcccHccccccccccccccEEEEEccHHHHHHHHHHHHHcccEEEEEEcccHHHHHHHHcccccc
MEKRHNYVRKVAEVATTLFitndkpniaGLILagsadfktelsqsdmfdpvrfsplknknkmgkyfdeisqdtgkycfgVEDTLRALELGSVETLICWENLDIQRYVLknhstsedrvlhltpeqekdkshftdketgvELELVECQPLLEWLANNYKSFGATLEIItdksqegsqfvrgfggig
MEKRHNYVRKVAEVATTlfitndkpnIAGLILAGSADFKTELSQSDMFDPVRFSPLKNKNKMGKYFDEISQDTGKYCFGVEDTLRALELGSVETLICWENLDIQRYVLKNHSTSEDRVLhltpeqekdkshftdketGVELELVECQPLLEWLANNYKSFGATLEIItdksqegsqfvrgfggig
MEKRHNYVRKVAEVATTLFITNDKPNIAGLILAGSADFKTELSQSDMFDPVRFSPLKNKNKMGKYFDEISQDTGKYCFGVEDTLRALELGSVETLICWENLDIQRYVLKNHSTSEDRVLHLTPEQEKDKSHFTDKETGVELELVECQPLLEWLANNYKSFGATLEIITDKSQEGSQFVRGFGGIG
******YVRKVAEVATTLFITNDKPNIAGLILAGSADFKTE********************MGKYFDEISQDTGKYCFGVEDTLRALELGSVETLICWENLDIQRYVLKNH*************************TGVELELVECQPLLEWLANNYKSFGATLEIITD****************
MEKRHNYVRKVAEVATTLFITNDKPNIAGLILAGSADFKTELSQSDMFDPVRFSPLKNKNKMGKYFDEISQDTGKYCFGVEDTLRALELGSVETLICWENLDIQRYVLKNHSTSEDRVLHL***************TGVELELVECQPLLEWLANNYKSFGATLEIITDKSQEGSQFVRGFGGIG
MEKRHNYVRKVAEVATTLFITNDKPNIAGLILAGSADFKTELSQSDMFDPVRFSPLKNKNKMGKYFDEISQDTGKYCFGVEDTLRALELGSVETLICWENLDIQRYVLKNHSTSEDRVLHLTPEQEKDKSHFTDKETGVELELVECQPLLEWLANNYKSFGATLEIITDKSQEGSQFVRGFGGIG
MEKRHNYVRKVAEVATTLFITNDKPNIAGLILAGSADFKTELSQSDMFDPVRFSPLKNKNKMGKYFDEISQDTGKYCFGVEDTLRALELGSVETLICWENLDIQRYVLKNHSTSEDRVLHLTPEQEKDKSHFTDKETGVELELVECQPLLEWLANNYKSFGATLEIITDKSQEGSQFVRGFGGIG
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iiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MEKRHNYVRKVAEVATTLFITNDKPNIAGLILAGSADFKTELSQSDMFDPVRFSPLKNKNKMGKYFDEISQDTGKYCFGVEDTLRALELGSVETLICWENLDIQRYVLKNHSTSEDRVLHLTPEQEKDKSHFTDKETGVELELVECQPLLEWLANNYKSFGATLEIITDKSQEGSQFVRGFGGIG
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query185 2.2.26 [Sep-21-2011]
Q9VPH7438 Eukaryotic peptide chain yes N/A 0.989 0.417 0.748 1e-87
Q9GR88435 Eukaryotic peptide chain N/A N/A 0.989 0.420 0.633 3e-76
Q5U2Q7437 Eukaryotic peptide chain yes N/A 0.989 0.418 0.646 7e-75
P62497437 Eukaryotic peptide chain yes N/A 0.989 0.418 0.646 7e-75
Q8BWY3437 Eukaryotic peptide chain yes N/A 0.989 0.418 0.646 7e-75
P62496437 Eukaryotic peptide chain N/A N/A 0.989 0.418 0.646 7e-75
P62495437 Eukaryotic peptide chain yes N/A 0.989 0.418 0.646 7e-75
Q0VCX5437 Eukaryotic peptide chain yes N/A 0.989 0.418 0.646 7e-75
Q5R4C7437 Eukaryotic peptide chain yes N/A 0.989 0.418 0.642 4e-74
P62498437 Eukaryotic peptide chain yes N/A 0.989 0.418 0.637 7e-74
>sp|Q9VPH7|ERF1_DROME Eukaryotic peptide chain release factor subunit 1 OS=Drosophila melanogaster GN=eRF1 PE=1 SV=2 Back     alignment and function desciption
 Score =  322 bits (824), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 164/219 (74%), Positives = 173/219 (78%), Gaps = 36/219 (16%)

Query: 1   MEKRHNYVRKVAEVATTLFITNDKPNIAGLILAGSADFKTELSQSDMFDP---------- 50
           MEKRHNYVRKVAEVAT LFITNDKPNIAGLILAGSADFKTELSQSDMFDP          
Sbjct: 195 MEKRHNYVRKVAEVATQLFITNDKPNIAGLILAGSADFKTELSQSDMFDPRLQSKVIKLV 254

Query: 51  -----------------------VRFSPLKNKNKMGKYFDEISQDTGKYCFGVEDTLRAL 87
                                  V+F  ++ K  +G+YFDEISQDTGKYCFGVEDTLRAL
Sbjct: 255 DVSYGGENGFNQAIELAAESLQNVKF--IQEKKLIGRYFDEISQDTGKYCFGVEDTLRAL 312

Query: 88  ELGSVETLICWENLDIQRYVLKNHSTSEDR-VLHLTPEQEKDKSHFTDKETGVELELVEC 146
           ELGSVETLICWENLDIQRYVLKNH+ S    VLHLTPEQEKDKSHFTDKE+GVE+EL+E 
Sbjct: 313 ELGSVETLICWENLDIQRYVLKNHANSTSTTVLHLTPEQEKDKSHFTDKESGVEMELIES 372

Query: 147 QPLLEWLANNYKSFGATLEIITDKSQEGSQFVRGFGGIG 185
           QPLLEWLANNYK FGATLEIITDKSQEGSQFVRGFGGIG
Sbjct: 373 QPLLEWLANNYKMFGATLEIITDKSQEGSQFVRGFGGIG 411
Directs the termination of nascent peptide synthesis (translation) in response to the termination codons UAA, UAG and UGA.
Drosophila melanogaster (taxid: 7227)
>sp|Q9GR88|ERF1_POLMI Eukaryotic peptide chain release factor subunit 1 OS=Polyandrocarpa misakiensis GN=ERF1 PE=2 SV=1 Back     alignment and function description
>sp|Q5U2Q7|ERF1_RAT Eukaryotic peptide chain release factor subunit 1 OS=Rattus norvegicus GN=Etf1 PE=2 SV=3 Back     alignment and function description
>sp|P62497|ERF1_RABIT Eukaryotic peptide chain release factor subunit 1 OS=Oryctolagus cuniculus GN=ETF1 PE=1 SV=3 Back     alignment and function description
>sp|Q8BWY3|ERF1_MOUSE Eukaryotic peptide chain release factor subunit 1 OS=Mus musculus GN=Etf1 PE=1 SV=4 Back     alignment and function description
>sp|P62496|ERF1_MESAU Eukaryotic peptide chain release factor subunit 1 OS=Mesocricetus auratus GN=ETF1 PE=1 SV=3 Back     alignment and function description
>sp|P62495|ERF1_HUMAN Eukaryotic peptide chain release factor subunit 1 OS=Homo sapiens GN=ETF1 PE=1 SV=3 Back     alignment and function description
>sp|Q0VCX5|ERF1_BOVIN Eukaryotic peptide chain release factor subunit 1 OS=Bos taurus GN=ETF1 PE=2 SV=3 Back     alignment and function description
>sp|Q5R4C7|ERF1_PONAB Eukaryotic peptide chain release factor subunit 1 OS=Pongo abelii GN=ETF1 PE=2 SV=3 Back     alignment and function description
>sp|P62498|ERF1_XENTR Eukaryotic peptide chain release factor subunit 1 OS=Xenopus tropicalis GN=etf1 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query185
307202624 442 Eukaryotic peptide chain release factor 0.989 0.414 0.761 7e-90
350408757 437 PREDICTED: eukaryotic peptide chain rele 0.989 0.418 0.761 9e-90
383853116 437 PREDICTED: eukaryotic peptide chain rele 0.989 0.418 0.761 9e-90
156548282 437 PREDICTED: eukaryotic peptide chain rele 0.989 0.418 0.761 2e-89
307184923 437 Eukaryotic peptide chain release factor 0.989 0.418 0.756 4e-89
332028400 437 Eukaryotic peptide chain release factor 0.989 0.418 0.756 4e-89
340716979 438 PREDICTED: LOW QUALITY PROTEIN: eukaryot 0.994 0.420 0.761 9e-89
193589590 438 PREDICTED: eukaryotic peptide chain rele 0.989 0.417 0.752 2e-88
328711925 440 PREDICTED: eukaryotic peptide chain rele 0.989 0.415 0.752 3e-88
91076450 439 PREDICTED: similar to eukaryotic release 0.989 0.416 0.752 7e-88
>gi|307202624|gb|EFN81945.1| Eukaryotic peptide chain release factor subunit 1 [Harpegnathos saltator] Back     alignment and taxonomy information
 Score =  335 bits (858), Expect = 7e-90,   Method: Compositional matrix adjust.
 Identities = 166/218 (76%), Positives = 178/218 (81%), Gaps = 35/218 (16%)

Query: 1   MEKRHNYVRKVAEVATTLFITNDKPNIAGLILAGSADFKTELSQSDMFDP---------- 50
           MEKRHNYVRKVAEVAT L+ITNDKPNIAGLILAGSADFKTELSQSDMFDP          
Sbjct: 195 MEKRHNYVRKVAEVATQLYITNDKPNIAGLILAGSADFKTELSQSDMFDPRLQAKVIKLV 254

Query: 51  -----------------------VRFSPLKNKNKMGKYFDEISQDTGKYCFGVEDTLRAL 87
                                  V+F  ++ K  +G+YFDEISQDTGKYCFGVEDTLRAL
Sbjct: 255 DVSYGGENGFNQAIELAAESLQNVKF--IQEKKLIGRYFDEISQDTGKYCFGVEDTLRAL 312

Query: 88  ELGSVETLICWENLDIQRYVLKNHSTSEDRVLHLTPEQEKDKSHFTDKETGVELELVECQ 147
           ELGSVETLICWENLDIQRYVLKNH+ +E++VLHLTPEQEKDK+HFTDKE+GVELELVECQ
Sbjct: 313 ELGSVETLICWENLDIQRYVLKNHTNAEEKVLHLTPEQEKDKTHFTDKESGVELELVECQ 372

Query: 148 PLLEWLANNYKSFGATLEIITDKSQEGSQFVRGFGGIG 185
           PLLEWLANNYKSFGATLEIITDKSQEGSQFVRGFGGIG
Sbjct: 373 PLLEWLANNYKSFGATLEIITDKSQEGSQFVRGFGGIG 410

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|350408757|ref|XP_003488503.1| PREDICTED: eukaryotic peptide chain release factor subunit 1-like [Bombus impatiens] gi|380018201|ref|XP_003693023.1| PREDICTED: eukaryotic peptide chain release factor subunit 1-like [Apis florea] Back     alignment and taxonomy information
>gi|383853116|ref|XP_003702070.1| PREDICTED: eukaryotic peptide chain release factor subunit 1-like [Megachile rotundata] Back     alignment and taxonomy information
>gi|156548282|ref|XP_001605843.1| PREDICTED: eukaryotic peptide chain release factor subunit 1-like isoform 1 [Nasonia vitripennis] gi|345485977|ref|XP_003425379.1| PREDICTED: eukaryotic peptide chain release factor subunit 1-like isoform 2 [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|307184923|gb|EFN71190.1| Eukaryotic peptide chain release factor subunit 1 [Camponotus floridanus] Back     alignment and taxonomy information
>gi|332028400|gb|EGI68444.1| Eukaryotic peptide chain release factor subunit 1 [Acromyrmex echinatior] Back     alignment and taxonomy information
>gi|340716979|ref|XP_003396967.1| PREDICTED: LOW QUALITY PROTEIN: eukaryotic peptide chain release factor subunit 1-like [Bombus terrestris] Back     alignment and taxonomy information
>gi|193589590|ref|XP_001948380.1| PREDICTED: eukaryotic peptide chain release factor subunit 1-like isoform 2 [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|328711925|ref|XP_003244678.1| PREDICTED: eukaryotic peptide chain release factor subunit 1-like [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|91076450|ref|XP_971668.1| PREDICTED: similar to eukaryotic release factor 1 CG5605-PA [Tribolium castaneum] gi|270002429|gb|EEZ98876.1| hypothetical protein TcasGA2_TC004489 [Tribolium castaneum] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query185
FB|FBgn0036974438 eRF1 "eukaryotic release facto 0.767 0.324 0.801 1.3e-82
UNIPROTKB|E1BTM1437 ETF1 "Uncharacterized protein" 0.767 0.324 0.710 3.7e-72
UNIPROTKB|Q0VCX5437 ETF1 "Eukaryotic peptide chain 0.767 0.324 0.710 3.7e-72
UNIPROTKB|E2RBM3437 ETF1 "Uncharacterized protein" 0.767 0.324 0.710 3.7e-72
UNIPROTKB|B7Z7P8423 ETF1 "Eukaryotic peptide chain 0.767 0.335 0.710 3.7e-72
UNIPROTKB|P62495437 ETF1 "Eukaryotic peptide chain 0.767 0.324 0.710 3.7e-72
UNIPROTKB|Q96CG1404 ETF1 "Eukaryotic peptide chain 0.767 0.351 0.710 3.7e-72
UNIPROTKB|F2Z505437 ETF1 "Uncharacterized protein" 0.767 0.324 0.710 3.7e-72
MGI|MGI:2385071437 Etf1 "eukaryotic translation t 0.767 0.324 0.710 3.7e-72
RGD|1305712437 Etf1 "eukaryotic translation t 0.767 0.324 0.710 3.7e-72
FB|FBgn0036974 eRF1 "eukaryotic release factor 1" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 600 (216.3 bits), Expect = 1.3e-82, Sum P(2) = 1.3e-82
 Identities = 117/146 (80%), Positives = 129/146 (88%)

Query:    41 ELSQSDMFDPVRFSPLKNKNKMGKYFDEISQDTGKYCFGVEDTLRALELGSVETLICWEN 100
             EL+ ++    V+F  ++ K  +G+YFDEISQDTGKYCFGVEDTLRALELGSVETLICWEN
Sbjct:   269 ELA-AESLQNVKF--IQEKKLIGRYFDEISQDTGKYCFGVEDTLRALELGSVETLICWEN 325

Query:   101 LDIQRYVLKNHSTSEDR-VLHLTPEQEKDKSHFTDKETGVELELVECQPLLEWLANNYKS 159
             LDIQRYVLKNH+ S    VLHLTPEQEKDKSHFTDKE+GVE+EL+E QPLLEWLANNYK 
Sbjct:   326 LDIQRYVLKNHANSTSTTVLHLTPEQEKDKSHFTDKESGVEMELIESQPLLEWLANNYKM 385

Query:   160 FGATLEIITDKSQEGSQFVRGFGGIG 185
             FGATLEIITDKSQEGSQFVRGFGGIG
Sbjct:   386 FGATLEIITDKSQEGSQFVRGFGGIG 411
GO:0003747 "translation release factor activity" evidence=NAS
GO:0018444 "translation release factor complex" evidence=NAS
GO:0006415 "translational termination" evidence=ISS;IMP;NAS
GO:0005829 "cytosol" evidence=ISS
GO:0008079 "translation termination factor activity" evidence=ISS
GO:0005737 "cytoplasm" evidence=IEA;NAS
GO:0006605 "protein targeting" evidence=NAS
GO:0035071 "salivary gland cell autophagic cell death" evidence=IEP
GO:0048102 "autophagic cell death" evidence=IEP
GO:0016149 "translation release factor activity, codon specific" evidence=IEA
GO:0007224 "smoothened signaling pathway" evidence=IGI
UNIPROTKB|E1BTM1 ETF1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q0VCX5 ETF1 "Eukaryotic peptide chain release factor subunit 1" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E2RBM3 ETF1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|B7Z7P8 ETF1 "Eukaryotic peptide chain release factor subunit 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|P62495 ETF1 "Eukaryotic peptide chain release factor subunit 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q96CG1 ETF1 "Eukaryotic peptide chain release factor subunit 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F2Z505 ETF1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
MGI|MGI:2385071 Etf1 "eukaryotic translation termination factor 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|1305712 Etf1 "eukaryotic translation termination factor 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q8BWY3ERF1_MOUSENo assigned EC number0.64670.98910.4187yesN/A
Q5U2Q7ERF1_RATNo assigned EC number0.64670.98910.4187yesN/A
Q5R4C7ERF1_PONABNo assigned EC number0.64220.98910.4187yesN/A
Q9VPH7ERF1_DROMENo assigned EC number0.74880.98910.4178yesN/A
P79063ERF1_SCHPONo assigned EC number0.50450.98910.4226yesN/A
Q9BMX0ERF1_DICDINo assigned EC number0.50940.95130.3990yesN/A
P35614ERF1Z_ARATHNo assigned EC number0.56810.98910.4206yesN/A
O59948ERF1_PODASNo assigned EC number0.50450.97830.4160yesN/A
P62498ERF1_XENTRNo assigned EC number0.63760.98910.4187yesN/A
Q0VCX5ERF1_BOVINNo assigned EC number0.64670.98910.4187yesN/A
P12385ERF1_YEASTNo assigned EC number0.52550.98370.4164yesN/A
P62495ERF1_HUMANNo assigned EC number0.64670.98910.4187yesN/A
P62497ERF1_RABITNo assigned EC number0.64670.98910.4187yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query185
COG1503411 COG1503, eRF1, Peptide chain release factor 1 (eRF 8e-43
pfam03465100 pfam03465, eRF1_3, eRF1 domain 3 2e-28
TIGR03676357 TIGR03676, aRF1/eRF1, peptide chain release factor 8e-25
PRK04011411 PRK04011, PRK04011, peptide chain release factor 1 3e-19
pfam03464129 pfam03464, eRF1_2, eRF1 domain 2 4e-12
>gnl|CDD|224420 COG1503, eRF1, Peptide chain release factor 1 (eRF1) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information 
 Score =  147 bits (372), Expect = 8e-43
 Identities = 58/215 (26%), Positives = 100/215 (46%), Gaps = 34/215 (15%)

Query: 2   EKRHNYVRKVAEVATTLFITNDKPNIAGLILAGSADFKTELSQSDMFDP----------- 50
           E  H + +KV E A+  F+   K  + G+IL G    K E  + D               
Sbjct: 191 EAAHEFYKKVGEAASEAFLPIAKKELKGIILGGPGPTKEEFVEGDYLHHELKKKVLGLVD 250

Query: 51  ------------VRFSP--------LKNKNKMGKYFDEISQDTGKYCFGVEDTLRALELG 90
                       +  +         ++ K  M ++F E+++D+G   +G E+   ALE+G
Sbjct: 251 VSYTGESGLRELIEKAEDALKDVDYVREKKLMEEFFKELAKDSGLAVYGEEEVREALEMG 310

Query: 91  SVETLICWENLDIQRYVLKNHSTSEDRVLHLTPEQEKDKSHFTDKETGVELELVECQPLL 150
           +V+TL+  E+L+ +R   K          +L  ++E ++  F   E G E+E VE   L+
Sbjct: 311 AVDTLLVSEDLEKERVTYKC---PTCGYENLKSKREFEQKRFRCPECGSEMEEVEVSDLV 367

Query: 151 EWLANNYKSFGATLEIITDKSQEGSQFVRGFGGIG 185
           + LA   +  GA +EII+D + EG+Q ++ FGG+ 
Sbjct: 368 DELAELAEESGAKVEIISDDTDEGAQLLKAFGGLA 402

Length = 411
>gnl|CDD|146221 pfam03465, eRF1_3, eRF1 domain 3 Back     alignment and domain information
>gnl|CDD|234307 TIGR03676, aRF1/eRF1, peptide chain release factor 1, archaeal and eukaryotic forms Back     alignment and domain information
>gnl|CDD|235198 PRK04011, PRK04011, peptide chain release factor 1; Provisional Back     alignment and domain information
>gnl|CDD|217575 pfam03464, eRF1_2, eRF1 domain 2 Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 185
PRK04011411 peptide chain release factor 1; Provisional 100.0
TIGR03676403 aRF1/eRF1 peptide chain release factor 1, archaeal 100.0
TIGR00108409 eRF peptide chain release factor eRF/aRF, subunit 100.0
COG1503411 eRF1 Peptide chain release factor 1 (eRF1) [Transl 100.0
KOG0688|consensus431 100.0
TIGR00111351 pelota probable translation factor pelota. This mo 99.97
PF03465113 eRF1_3: eRF1 domain 3; InterPro: IPR005142 This do 99.96
COG1537352 PelA Predicted RNA-binding proteins [General funct 99.96
KOG2869|consensus379 99.93
PF03464133 eRF1_2: eRF1 domain 2; InterPro: IPR005141 This do 98.63
TIGR03677117 rpl7ae 50S ribosomal protein L7Ae. Multifunctional 96.42
COG1358116 RPL8A Ribosomal protein HS6-type (S12/L30/L7a) [Tr 96.41
PRK04175122 rpl7ae 50S ribosomal protein L7Ae; Validated 96.11
PRK1360084 putative ribosomal protein L7Ae-like; Provisional 96.1
PRK1360282 putative ribosomal protein L7Ae-like; Provisional 96.08
PRK0668382 hypothetical protein; Provisional 95.89
PRK07714100 hypothetical protein; Provisional 95.39
PF0124895 Ribosomal_L7Ae: Ribosomal protein L7Ae/L30e/S12e/G 95.28
PRK1360182 putative L7Ae-like ribosomal protein; Provisional 95.28
PRK0728398 hypothetical protein; Provisional 94.82
PRK0101899 50S ribosomal protein L30e; Reviewed 94.82
PRK05583104 ribosomal protein L7Ae family protein; Provisional 94.64
PF0803276 SpoU_sub_bind: RNA 2'-O ribose methyltransferase s 94.38
PRK0039846 rpoP DNA-directed RNA polymerase subunit P; Provis 94.17
PTZ00106108 60S ribosomal protein L30; Provisional 93.87
TIGR00373158 conserved hypothetical protein TIGR00373. This fam 93.69
PRK06266178 transcription initiation factor E subunit alpha; V 93.01
smart00531147 TFIIE Transcription initiation factor IIE. 90.72
COG1911100 RPL30 Ribosomal protein L30E [Translation, ribosom 90.43
PTZ00222263 60S ribosomal protein L7a; Provisional 90.29
PF0972342 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR0134 90.24
smart0083441 CxxC_CXXC_SSSS Putative regulatory protein. CxxC_C 90.21
PRK09190220 hypothetical protein; Provisional 90.18
COG1675176 TFA1 Transcription initiation factor IIE, alpha su 88.49
COG1592166 Rubrerythrin [Energy production and conversion] 88.3
TIGR0260552 CxxC_CxxC_SSSS putative regulatory protein, FmdB f 88.25
PTZ00365266 60S ribosomal protein L7Ae-like; Provisional 87.58
PF10116138 Host_attach: Protein required for attachment to ho 85.79
smart0065944 RPOLCX RNA polymerase subunit CX. present in RNA p 83.38
COG1198 730 PriA Primosomal protein N' (replication factor Y) 82.49
PF13397105 DUF4109: Domain of unknown function (DUF4109) 82.33
PF1324826 zf-ribbon_3: zinc-ribbon domain 80.44
>PRK04011 peptide chain release factor 1; Provisional Back     alignment and domain information 
Probab=100.00  E-value=1e-43  Score=315.29  Aligned_cols=182  Identities=27%  Similarity=0.460  Sum_probs=166.8

Q ss_pred             hhhhHHHHHHHHHHHHhhhhcCCCCccEEEEeCChhhHHhhcccCCCCHhhhc---------------------------
Q psy9094           2 EKRHNYVRKVAEVATTLFITNDKPNIAGLILAGSADFKTELSQSDMFDPVRFS---------------------------   54 (185)
Q Consensus         2 ~~~~~f~k~va~~~~~~f~~~~~~~i~~lIIaGPg~~k~~f~~~~~L~~~l~~---------------------------   54 (185)
                      +++++||++||+.+.++|++.++.++++|||||||++|++|.+++||++++++                           
T Consensus       192 ~~~~~f~k~Vae~~~~~f~~~~~~~v~~IvlaGpg~~K~~f~~~~~L~~~l~~~vv~~~~~s~~~~~Gl~E~l~~~~~~L  271 (411)
T PRK04011        192 QAAHEFYKRVGEKANEAFLPLLEGKLKGILIGGPGPTKEEFLEGDYLHYELKKKILGLFDVSYTGESGLRELVDKASDLL  271 (411)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhccccccEEEEECChhHHHHHhhhhhhhHHHHhheEEEEecCCCCccCHHHHHHHHHHHH
Confidence            46889999999999999986445789999999999999999988899998764                           


Q ss_pred             ----hHHHHHHHHHHHHHHhhCCCceEecHHHHHHHHHcCCccEEEeeccCcceeeEeecCCCCceeEEeeCccccccCC
Q psy9094          55 ----PLKNKNKMGKYFDEISQDTGKYCFGVEDTLRALELGSVETLICWENLDIQRYVLKNHSTSEDRVLHLTPEQEKDKS  130 (185)
Q Consensus        55 ----~~~E~~lve~f~~~l~~~~~~~~yG~~ev~~Ale~GaV~~Llv~d~l~~~r~~~~c~~~~~~~~~~~~~~~~~~~~  130 (185)
                          +.+|+++|++||+++++++|++|||+++|++|+++|||+||||+|+|.+.|++++|++|+...+.+..+.+..  .
T Consensus       272 ~~~k~~~e~~lle~f~~~l~~d~g~avyG~~~V~~Ale~GAVetLLV~d~l~~~r~~~~c~~c~~~~~~~~~~~~~~--~  349 (411)
T PRK04011        272 KEQELVKEKKLMEEFFKELAKDGGLAVYGEEEVRKALEMGAVDTLLISEDLRKDRVTYKCPNCGYEEEKTVKRREEL--P  349 (411)
T ss_pred             HHhHHHHHHHHHHHHHHHHhcCCCcEEEcHHHHHHHHHcCCceEEEEeccccceeEEEEcCCCCcceeeeccccccc--c
Confidence                6789999999999999999999999999999999999999999999999999999999998888876665532  2


Q ss_pred             ccccCccCcchhhhccccHHHHHHHHHHhcCCEEEEeCCCCchHHHHhhhcCCcC
Q psy9094         131 HFTDKETGVELELVECQPLLEWLANNYKSFGATLEIITDKSQEGSQFVRGFGGIG  185 (185)
Q Consensus       131 ~~~c~~~g~~~~~~e~~~~v~~l~e~a~~~g~~v~ivs~~~e~G~~l~~~~GGia  185 (185)
                      .-.||.||++++.++.+++++||+++|+++|++|+|||++|++|+||+++|||||
T Consensus       350 ~~~c~~~~~~~~~~~~~~~v~~l~e~a~~~g~~v~iis~~~e~G~qL~~~fGGIa  404 (411)
T PRK04011        350 EKTCPKCGSELEIVEEEDIIEELSELAEQSGTKVEVISTDTEEGEQLLKAFGGIA  404 (411)
T ss_pred             cccCcccCcccccchhhhHHHHHHHHHHHcCCEEEEECCCChhHHHHHHcCCCEE
Confidence            3369999999999999999999999999999999999999999999999999996

>TIGR03676 aRF1/eRF1 peptide chain release factor 1, archaeal and eukaryotic forms Back     alignment and domain information
>TIGR00108 eRF peptide chain release factor eRF/aRF, subunit 1 Back     alignment and domain information
>COG1503 eRF1 Peptide chain release factor 1 (eRF1) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG0688|consensus Back     alignment and domain information
>TIGR00111 pelota probable translation factor pelota Back     alignment and domain information
>PF03465 eRF1_3: eRF1 domain 3; InterPro: IPR005142 This domain is found in the release factor eRF1 which terminates protein biosynthesis by recognizing stop codons at the A site of the ribosome and stimulating peptidyl-tRNA bond hydrolysis at the peptidyl transferase centre Back     alignment and domain information
>COG1537 PelA Predicted RNA-binding proteins [General function prediction only] Back     alignment and domain information
>KOG2869|consensus Back     alignment and domain information
>PF03464 eRF1_2: eRF1 domain 2; InterPro: IPR005141 This domain is found in the release factor eRF1 which terminates protein biosynthesis by recognizing stop codons at the A site of the ribosome and stimulating peptidyl-tRNA bond hydrolysis at the peptidyl transferase centre Back     alignment and domain information
>TIGR03677 rpl7ae 50S ribosomal protein L7Ae Back     alignment and domain information
>COG1358 RPL8A Ribosomal protein HS6-type (S12/L30/L7a) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK04175 rpl7ae 50S ribosomal protein L7Ae; Validated Back     alignment and domain information
>PRK13600 putative ribosomal protein L7Ae-like; Provisional Back     alignment and domain information
>PRK13602 putative ribosomal protein L7Ae-like; Provisional Back     alignment and domain information
>PRK06683 hypothetical protein; Provisional Back     alignment and domain information
>PRK07714 hypothetical protein; Provisional Back     alignment and domain information
>PF01248 Ribosomal_L7Ae: Ribosomal protein L7Ae/L30e/S12e/Gadd45 family; InterPro: IPR004038 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms Back     alignment and domain information
>PRK13601 putative L7Ae-like ribosomal protein; Provisional Back     alignment and domain information
>PRK07283 hypothetical protein; Provisional Back     alignment and domain information
>PRK01018 50S ribosomal protein L30e; Reviewed Back     alignment and domain information
>PRK05583 ribosomal protein L7Ae family protein; Provisional Back     alignment and domain information
>PF08032 SpoU_sub_bind: RNA 2'-O ribose methyltransferase substrate binding; InterPro: IPR013123 Most cellular RNAs undergo a number of post-transcriptional nucleoside modifications Back     alignment and domain information
>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional Back     alignment and domain information
>PTZ00106 60S ribosomal protein L30; Provisional Back     alignment and domain information
>TIGR00373 conserved hypothetical protein TIGR00373 Back     alignment and domain information
>PRK06266 transcription initiation factor E subunit alpha; Validated Back     alignment and domain information
>smart00531 TFIIE Transcription initiation factor IIE Back     alignment and domain information
>COG1911 RPL30 Ribosomal protein L30E [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PTZ00222 60S ribosomal protein L7a; Provisional Back     alignment and domain information
>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria Back     alignment and domain information
>smart00834 CxxC_CXXC_SSSS Putative regulatory protein Back     alignment and domain information
>PRK09190 hypothetical protein; Provisional Back     alignment and domain information
>COG1675 TFA1 Transcription initiation factor IIE, alpha subunit [Transcription] Back     alignment and domain information
>COG1592 Rubrerythrin [Energy production and conversion] Back     alignment and domain information
>TIGR02605 CxxC_CxxC_SSSS putative regulatory protein, FmdB family Back     alignment and domain information
>PTZ00365 60S ribosomal protein L7Ae-like; Provisional Back     alignment and domain information
>PF10116 Host_attach: Protein required for attachment to host cells; InterPro: IPR019291 Members of this family of bacterial proteins are required for the attachment of the bacterium to host cells [, ] Back     alignment and domain information
>smart00659 RPOLCX RNA polymerase subunit CX Back     alignment and domain information
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] Back     alignment and domain information
>PF13397 DUF4109: Domain of unknown function (DUF4109) Back     alignment and domain information
>PF13248 zf-ribbon_3: zinc-ribbon domain Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query185
3j2k_6411 Cryo-Em Structure Of The Mammalian Erf1-Erf3-Associ 4e-76
3e1y_A451 Crystal Structure Of Human Erf1ERF3 COMPLEX Length 5e-76
1dt9_A437 The Crystal Structure Of Human Eukaryotic Release F 6e-76
2ktu_A170 Human Erf1 C-Domain, "closed" Conformer Length = 17 3e-55
3e20_C441 Crystal Structure Of S.Pombe Erf1ERF3 COMPLEX Lengt 3e-52
2hst_A143 Solution Structure Of The Middle Domain Of Human Eu 8e-19
3ir9_A166 C-Terminal Domain Of Peptide Chain Release Factor F 3e-04
>pdb|3J2K|6 Chain 6, Cryo-Em Structure Of The Mammalian Erf1-Erf3-Associated Termination Complex Length = 411 Back     alignment and structure 
Iteration: 1

 Score =  280 bits (715), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 141/218 (64%), Positives = 160/218 (73%), Gaps = 35/218 (16%)
Query: 1   MEKRHNYVRKVAEVATTLFITNDKPNIAGLILAGSADFKTELSQSDMFDP---------- 50
           MEKRHNYVRKVAE A  LFI+ DK N+AGL+LAGSADFKTELSQSDMFD           
Sbjct: 186 MEKRHNYVRKVAETAVQLFISGDKVNVAGLVLAGSADFKTELSQSDMFDQRLQSKVLKLV 245
Query: 51  -----------------------VRFSPLKNKNKMGKYFDEISQDTGKYCFGVEDTLRAL 87
                                  V+F  ++ K  +G+YFDEISQDTGKYCFGVEDTL+AL
Sbjct: 246 DISYGGENGFNQAIELSTEVLSNVKF--IQEKKLIGRYFDEISQDTGKYCFGVEDTLKAL 303
Query: 88  ELGSVETLICWENLDIQRYVLKNHSTSEDRVLHLTPEQEKDKSHFTDKETGVELELVECQ 147
           E+G+VE LI +ENLDI RYVL    T E+++L+LTPEQEKDKSHFTDKETG E EL+E  
Sbjct: 304 EMGAVEILIVYENLDIMRYVLHCQGTEEEKILYLTPEQEKDKSHFTDKETGQEHELIESM 363
Query: 148 PLLEWLANNYKSFGATLEIITDKSQEGSQFVRGFGGIG 185
           PLLEW ANNYK FGATLEI+TDKSQEGSQFV+GFGGIG
Sbjct: 364 PLLEWFANNYKKFGATLEIVTDKSQEGSQFVKGFGGIG 401
>pdb|3E1Y|A Chain A, Crystal Structure Of Human Erf1ERF3 COMPLEX Length = 451 Back     alignment and structure
>pdb|1DT9|A Chain A, The Crystal Structure Of Human Eukaryotic Release Factor Erf1-Mechanism Of Stop Codon Recognition And Peptidyl-Trna Hydrolysis Length = 437 Back     alignment and structure
>pdb|2KTU|A Chain A, Human Erf1 C-Domain, "closed" Conformer Length = 170 Back     alignment and structure
>pdb|3E20|C Chain C, Crystal Structure Of S.Pombe Erf1ERF3 COMPLEX Length = 441 Back     alignment and structure
>pdb|2HST|A Chain A, Solution Structure Of The Middle Domain Of Human Eukaryotic Translation Termination Factor Erf1 Length = 143 Back     alignment and structure
>pdb|3IR9|A Chain A, C-Terminal Domain Of Peptide Chain Release Factor From Methanosarcina Mazei. Length = 166 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query185
1dt9_A437 ERF1, protein (eukaryotic peptide chain release fa 7e-48
3e20_C441 Eukaryotic peptide chain release factor subunit 1; 5e-44
3ir9_A166 Peptide chain release factor subunit 1; structural 1e-42
1x52_A124 Pelota homolog, CGI-17; ERF1_3 domain, structural 1e-19
3agk_A373 Peptide chain release factor subunit 1; translatio 2e-19
3mca_B390 Protein DOM34, elongation factor 1 alpha-like prot 8e-19
3j15_A357 Protein pelota; ribosome recycling, ribosome, arch 8e-18
2vgn_A386 DOM34; translation termination factor, protein bio 4e-17
3obw_A364 Protein pelota homolog; SM fold, hydrolase; 2.60A 8e-15
3agj_B358 Protein pelota homolog; GTP binding, translation-h 9e-15
3oby_A352 Protein pelota homolog; SM fold, hydrolase; 2.90A 1e-13
2qi2_A347 Pelota, cell division protein pelota related prote 1e-06
>1dt9_A ERF1, protein (eukaryotic peptide chain release factor subunit 1); tRNA mimicry, protein sythesis, STOP codon recognition, peptidyl-tRNA hydrolysis; 2.70A {Homo sapiens} SCOP: c.55.4.2 d.79.3.2 d.91.1.1 PDB: 3e1y_A* 2ktu_A 2ktv_A 2lgt_A 2hst_A Length = 437 Back     alignment and structure
 Score =  160 bits (405), Expect = 7e-48
 Identities = 139/216 (64%), Positives = 157/216 (72%), Gaps = 31/216 (14%)

Query: 1   MEKRHNYVRKVAEVATTLFITNDKPNIAGLILAGSADFKTELSQSDMFDP---------- 50
           MEKRHNYVRKVAE A  LFI+ DK N+AGL+LAGSADFKTELSQSDMFD           
Sbjct: 195 MEKRHNYVRKVAETAVQLFISGDKVNVAGLVLAGSADFKTELSQSDMFDQRLQSKVLKLV 254

Query: 51  ---------------------VRFSPLKNKNKMGKYFDEISQDTGKYCFGVEDTLRALEL 89
                                     ++ K  +G+YFDEISQDTGKYCFGVEDTL+ALE+
Sbjct: 255 DISYGGENGFNQAIELSTEVLSNVKFIQEKKLIGRYFDEISQDTGKYCFGVEDTLKALEM 314

Query: 90  GSVETLICWENLDIQRYVLKNHSTSEDRVLHLTPEQEKDKSHFTDKETGVELELVECQPL 149
           G+VE LI +ENLDI RYVL    T E+++L+LTPEQEKDKSHFTDKETG E EL+E  PL
Sbjct: 315 GAVEILIVYENLDIMRYVLHCQGTEEEKILYLTPEQEKDKSHFTDKETGQEHELIESMPL 374

Query: 150 LEWLANNYKSFGATLEIITDKSQEGSQFVRGFGGIG 185
           LEW ANNYK FGATLEI+TDKSQEGSQFV+GFGGIG
Sbjct: 375 LEWFANNYKKFGATLEIVTDKSQEGSQFVKGFGGIG 410
>3e20_C Eukaryotic peptide chain release factor subunit 1; SUP35, SUP45, translation termination, peptide release, GTP- nucleotide-binding; 3.50A {Schizosaccharomyces pombe} Length = 441 Back     alignment and structure
>3ir9_A Peptide chain release factor subunit 1; structural genomics, APC36528.1, C-terminal domain, PSI-2, protein structure initiative; 2.21A {Methanosarcina mazei} Length = 166 Back     alignment and structure
>1x52_A Pelota homolog, CGI-17; ERF1_3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.79.3.2 Length = 124 Back     alignment and structure
>3agk_A Peptide chain release factor subunit 1; translation; 2.10A {Aeropyrum pernix} Length = 373 Back     alignment and structure
>3mca_B Protein DOM34, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe} Length = 390 Back     alignment and structure
>3j15_A Protein pelota; ribosome recycling, ribosome, archaea, translation-transport complex; HET: ADP; 6.60A {Pyrococcus furiosus} Length = 357 Back     alignment and structure
>2vgn_A DOM34; translation termination factor, protein biosynthesis, translation regulation, cell division, mRNA degradation; 2.5A {Saccharomyces cerevisiae} SCOP: b.38.4.1 c.55.4.2 d.79.3.2 PDB: 2vgm_A 3izq_0 3j16_A* Length = 386 Back     alignment and structure
>3obw_A Protein pelota homolog; SM fold, hydrolase; 2.60A {Sulfolobus solfataricus} Length = 364 Back     alignment and structure
>3agj_B Protein pelota homolog; GTP binding, translation-hydrolase complex; HET: GTP; 2.30A {Aeropyrum pernix} Length = 358 Back     alignment and structure
>3oby_A Protein pelota homolog; SM fold, hydrolase; 2.90A {Archaeoglobus fulgidus} Length = 352 Back     alignment and structure
>2qi2_A Pelota, cell division protein pelota related protein; DOM34, cell cycle; 2.90A {Thermoplasma acidophilum} SCOP: b.38.4.1 c.55.4.2 d.79.3.2 Length = 347 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query185
3e20_C441 Eukaryotic peptide chain release factor subunit 1; 100.0
1dt9_A437 ERF1, protein (eukaryotic peptide chain release fa 100.0
3ir9_A166 Peptide chain release factor subunit 1; structural 100.0
3obw_A364 Protein pelota homolog; SM fold, hydrolase; 2.60A 100.0
3mca_B390 Protein DOM34, elongation factor 1 alpha-like prot 100.0
3j15_A357 Protein pelota; ribosome recycling, ribosome, arch 100.0
3oby_A352 Protein pelota homolog; SM fold, hydrolase; 2.90A 99.98
2vgn_A386 DOM34; translation termination factor, protein bio 99.98
3agj_B358 Protein pelota homolog; GTP binding, translation-h 99.97
2qi2_A347 Pelota, cell division protein pelota related prote 99.96
3agk_A373 Peptide chain release factor subunit 1; translatio 99.96
1x52_A124 Pelota homolog, CGI-17; ERF1_3 domain, structural 99.93
2lbw_A121 H/ACA ribonucleoprotein complex subunit 2; L7AE, s 96.54
1xbi_A120 50S ribosomal protein L7AE; alpha-beta-alpha sandw 96.22
3j21_Z99 50S ribosomal protein L30E; archaea, archaeal, KIN 96.19
3v7e_A82 Ribosome-associated protein L7AE-like; RNA-protein 96.12
2ale_A134 SNU13, NHP2/L7AE family protein YEL026W; splicing, 95.95
3u5e_c105 L32, RP73, YL38, 60S ribosomal protein L30; transl 95.73
3cpq_A110 50S ribosomal protein L30E; RNA-protein, elongatio 95.71
2xzm_U126 Ribosomal protein L7AE containing protein; ribosom 95.69
1vq8_F120 50S ribosomal protein L7AE; ribosome 50S, protein- 95.69
3o85_A122 Ribosomal protein L7AE; alpha beta sandwich fold, 95.66
3on1_A101 BH2414 protein; structural genomics, PSI-2, protei 95.63
3iz5_f112 60S ribosomal protein L30 (L30E); eukaryotic ribos 95.55
2fc3_A124 50S ribosomal protein L7AE; alpha-beta-alpha sandw 95.55
3v7q_A101 Probable ribosomal protein YLXQ; L7AE superfamily, 95.53
2aif_A135 Ribosomal protein L7A; high-mobility like protein, 95.49
4a18_G104 RPL30; ribosome, eukaryotic initiation factor 6, E 95.46
1rlg_A119 50S ribosomal protein L7AE; protein-RNA, structura 95.32
1w41_A101 50S ribosomal protein L30E; electrostatic interact 95.27
2jnb_A144 NHP2-like protein 1; splicing, KINK-turn RNA-bindi 93.61
3jyw_G113 60S ribosomal protein L8(A); eukaryotic ribosome, 92.08
3u5c_M143 40S ribosomal protein S12, 40S ribosomal protein S 90.68
3vi6_A125 60S ribosomal protein L30; three-layer alpha/beta/ 90.64
2zkr_f266 60S ribosomal protein L7A; protein-RNA complex, 60 90.37
3pwf_A170 Rubrerythrin; non heme iron peroxidases, oxidative 88.3
3izc_H256 60S ribosomal protein RPL8 (L7AE); eukaryotic ribo 85.37
2lcq_A165 Putative toxin VAPC6; PIN domain, Zn ribbon domain 84.08
2kdx_A119 HYPA, hydrogenase/urease nickel incorporation prot 81.78
3iz5_H258 60S ribosomal protein L7A (L7AE); eukaryotic ribos 81.21
4a17_F255 RPL7A, 60S ribosomal protein L9; eukaryotic riboso 80.92
>3e20_C Eukaryotic peptide chain release factor subunit 1; SUP35, SUP45, translation termination, peptide release, GTP- nucleotide-binding; 3.50A {Schizosaccharomyces pombe} Back     alignment and structure
Probab=100.00  E-value=2.2e-43  Score=314.31  Aligned_cols=183  Identities=58%  Similarity=0.952  Sum_probs=96.9

Q ss_pred             hhhhHHHHHHHHHHHHhhhhcCCCCccEEEEeCChhhHHhhcccCCCCHhhhc---------------------------
Q psy9094           2 EKRHNYVRKVAEVATTLFITNDKPNIAGLILAGSADFKTELSQSDMFDPVRFS---------------------------   54 (185)
Q Consensus         2 ~~~~~f~k~va~~~~~~f~~~~~~~i~~lIIaGPg~~k~~f~~~~~L~~~l~~---------------------------   54 (185)
                      +++++||++|++.+.++|.+.++.++++|||||||++|++|++++||+++|++                           
T Consensus       201 e~~~~f~~~Vae~l~~~~~~~~~~~v~~lVlaGPg~~k~~f~~~~~l~~~L~~kvv~~vdvs~gg~~Gl~EvL~~~~~~L  280 (441)
T 3e20_C          201 EKRHNYVRKVAEGAVQHFITDDKPNVAGIVLAGSADFKTELGQSDLFDQRLQSRIIKTVDVSYGGDAGFNQAIELAADTL  280 (441)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHhhhhcccCcCEEEEECCHHHHHHHHHhcccCHHHHhheEEEEECCCCCccCHHHHHHHHHHHH
Confidence            45689999999999999975335689999999999999999987799888754                           


Q ss_pred             ----hHHHHHHHHHHHHHHhhCCCceEecHHHHHHHHHcCCccEEEeeccCcceeeEeecCCCCceeEEeeCcccccc--
Q psy9094          55 ----PLKNKNKMGKYFDEISQDTGKYCFGVEDTLRALELGSVETLICWENLDIQRYVLKNHSTSEDRVLHLTPEQEKD--  128 (185)
Q Consensus        55 ----~~~E~~lve~f~~~l~~~~~~~~yG~~ev~~Ale~GaV~~Llv~d~l~~~r~~~~c~~~~~~~~~~~~~~~~~~--  128 (185)
                          +++|+++|++|+++|++++|++|||+++|++|+++|||+||||+|++...||+++|++|+ ..+.++.|.+..+  
T Consensus       281 ~d~k~~~E~~lle~f~~~l~~d~g~a~YG~~eV~~Ale~GAVetLLIsD~l~~~r~~~r~~~~~-~~~~~~~~~~~~~~~  359 (441)
T 3e20_C          281 SNVKYVQEKKLIQRFFDEISLDSGKYCFGVVDTMNALQEGAVETLLCFADLDMIRYEFKNSEGN-PVITYMTKEQEEKDS  359 (441)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHTTCSCCCCSHHHHHHHHHSSCCSEEEEETTCCCEEC-----------CCEECSCTTTCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCcEEECHHHHHHHHHhCCccEEEEecccccceeEEECCCCc-eEEEecCcccccccc
Confidence                789999999999999999999999999999999999999999999999999999999996 3444566664333  


Q ss_pred             -CCccccCccCcchhhhccccHHHHHHHHHHhcCCEEEEeCCCCchHHHHhhhcCCcC
Q psy9094         129 -KSHFTDKETGVELELVECQPLLEWLANNYKSFGATLEIITDKSQEGSQFVRGFGGIG  185 (185)
Q Consensus       129 -~~~~~c~~~g~~~~~~e~~~~v~~l~e~a~~~g~~v~ivs~~~e~G~~l~~~~GGia  185 (185)
                       ++.+.||.||.++++++++++++||+++|+++|++|+|||++|++|+||+++|||||
T Consensus       360 ~~~~~~c~~~g~~~~~~e~~~~ve~l~e~a~~~G~~v~~vs~~~~eG~ql~~~fgGIa  417 (441)
T 3e20_C          360 TNSFLLDKDTGAEMELVSSMLLSEWLAEHYKDYGANLEFVSDRSQEGMQFVKGFGGIG  417 (441)
T ss_dssp             -----------------CCEEHHHHHHHHGGGGSCCEEEECTTSHHHHHHHHTSTTEE
T ss_pred             ccccccCcccCccceecchhhHHHHHHHHHHHcCCEEEEECCCCHHHHHHHHcCCcEE
Confidence             456789999999999999999999999999999999999999999999999999996
>1dt9_A ERF1, protein (eukaryotic peptide chain release factor subunit 1); tRNA mimicry, protein sythesis, STOP codon recognition, peptidyl-tRNA hydrolysis; 2.70A {Homo sapiens} SCOP: c.55.4.2 d.79.3.2 d.91.1.1 PDB: 3e1y_A* 2ktu_A 2ktv_A 2lgt_A 2hst_A Back     alignment and structure
>3ir9_A Peptide chain release factor subunit 1; structural genomics, APC36528.1, C-terminal domain, PSI-2, protein structure initiative; 2.21A {Methanosarcina mazei} Back     alignment and structure
>3obw_A Protein pelota homolog; SM fold, hydrolase; 2.60A {Sulfolobus solfataricus} Back     alignment and structure
>3mca_B Protein DOM34, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe} Back     alignment and structure
>3j15_A Protein pelota; ribosome recycling, ribosome, archaea, translation-transport complex; HET: ADP; 6.60A {Pyrococcus furiosus} Back     alignment and structure
>3oby_A Protein pelota homolog; SM fold, hydrolase; 2.90A {Archaeoglobus fulgidus} Back     alignment and structure
>2vgn_A DOM34; translation termination factor, protein biosynthesis, translation regulation, cell division, mRNA degradation; 2.5A {Saccharomyces cerevisiae} SCOP: b.38.4.1 c.55.4.2 d.79.3.2 PDB: 2vgm_A 3izq_0 3j16_A* Back     alignment and structure
>3agj_B Protein pelota homolog; GTP binding, translation-hydrolase complex; HET: GTP; 2.30A {Aeropyrum pernix} Back     alignment and structure
>2qi2_A Pelota, cell division protein pelota related protein; DOM34, cell cycle; 2.90A {Thermoplasma acidophilum} SCOP: b.38.4.1 c.55.4.2 d.79.3.2 Back     alignment and structure
>3agk_A Peptide chain release factor subunit 1; translation; 2.10A {Aeropyrum pernix} Back     alignment and structure
>1x52_A Pelota homolog, CGI-17; ERF1_3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.79.3.2 Back     alignment and structure
>2lbw_A H/ACA ribonucleoprotein complex subunit 2; L7AE, snoRNP, scaRNP, RNA binding protein; NMR {Saccharomyces cerevisiae} PDB: 2lbx_A Back     alignment and structure
>1xbi_A 50S ribosomal protein L7AE; alpha-beta-alpha sandwich fold, RNA binding protein/structural protein complex; HET: EPE; 1.45A {Methanocaldococcus jannaschii} SCOP: d.79.3.1 PDB: 1ra4_A* 1sds_A 3paf_A Back     alignment and structure
>3j21_Z 50S ribosomal protein L30E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus} Back     alignment and structure
>3v7e_A Ribosome-associated protein L7AE-like; RNA-protein complex, K-turn, L7AE-like, A member L7AE/L30E superfamily; HET: SAM; 2.80A {Bacillus subtilis} Back     alignment and structure
>2ale_A SNU13, NHP2/L7AE family protein YEL026W; splicing, RNA, yeast, His-TAG, RNA binding protein; 1.80A {Saccharomyces cerevisiae} SCOP: d.79.3.1 PDB: 1zwz_A 2ozb_A 3siu_A 3siv_A 1e7k_A Back     alignment and structure
>3u5e_c L32, RP73, YL38, 60S ribosomal protein L30; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3izc_f 3izs_f 3o58_Z 3o5h_Z 1t0k_B 3u5i_c 4b6a_c 1ck2_A 1cn7_A 1nmu_B* 3jyw_2 Back     alignment and structure
>3cpq_A 50S ribosomal protein L30E; RNA-protein, elongation factor, ribonucleoprotein, structural genomics, NPPSFA; 1.90A {Methanocaldococcus jannaschii} Back     alignment and structure
>2xzm_U Ribosomal protein L7AE containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_U Back     alignment and structure
>1vq8_F 50S ribosomal protein L7AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.79.3.1 PDB: 1vq4_F* 1vq5_F* 1vq6_F* 1vq7_F* 1s72_F* 1vq9_F* 1vqk_F* 1vql_F* 1vqm_F* 1vqn_F* 1vqo_F* 1vqp_F* 1yhq_F* 1yi2_F* 1yij_F* 1yit_F* 1yj9_F* 1yjn_F* 1yjw_F* 2otj_F* ... Back     alignment and structure
>3o85_A Ribosomal protein L7AE; alpha beta sandwich fold, K-turn RNA binding protein, KINK T ribosomal protein; 1.81A {Giardia lamblia} Back     alignment and structure
>3on1_A BH2414 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; HET: MSE; 1.65A {Bacillus halodurans} Back     alignment and structure
>2fc3_A 50S ribosomal protein L7AE; alpha-beta-alpha sandwich, ribosome, RNA binding protein; 1.56A {Aeropyrum pernix} SCOP: d.79.3.1 PDB: 3pla_C* 3id5_C* 3hax_D* 2hvy_D* 3hay_D* 3nvi_B 3nmu_C 3nvk_E* 3lwr_C 3lwo_C* 3lwq_C* 3lwp_C 3lwv_C 3hjw_C* 2czw_A 1pxw_A Back     alignment and structure
>3v7q_A Probable ribosomal protein YLXQ; L7AE superfamily, K-turn binding, K-turn RNA, hypothetical R protein, RNA binding protein; HET: CIT; 1.55A {Bacillus subtilis} Back     alignment and structure
>2aif_A Ribosomal protein L7A; high-mobility like protein, transcription factor, structural genomics, structural genomics consortium, SGC; 1.90A {Cryptosporidium parvum} SCOP: d.79.3.1 Back     alignment and structure
>4a18_G RPL30; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_G 4a1b_G 4a1d_G 4adx_6 Back     alignment and structure
>1rlg_A 50S ribosomal protein L7AE; protein-RNA, structural protein/RNA complex; HET: 5BU; 2.70A {Archaeoglobus fulgidus} SCOP: d.79.3.1 Back     alignment and structure
>1w41_A 50S ribosomal protein L30E; electrostatic interactions, thermostability, protein engineering; 1.7A {Thermococcus celer} SCOP: d.79.3.1 PDB: 3n4y_A 3lfo_A 1w40_A 1go0_A 1go1_A 1h7m_A 1w42_A 1w3e_X 3ra6_A 3ra5_A 3n4z_A 2bo1_A Back     alignment and structure
>2jnb_A NHP2-like protein 1; splicing, KINK-turn RNA-binding protein, NHPX, RNA binding protein; NMR {Homo sapiens} SCOP: d.79.3.1 Back     alignment and structure
>3jyw_G 60S ribosomal protein L8(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} PDB: 1s1i_G Back     alignment and structure
>3u5c_M 40S ribosomal protein S12, 40S ribosomal protein S11-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_M Back     alignment and structure
>3vi6_A 60S ribosomal protein L30; three-layer alpha/beta/ALPA; 1.59A {Homo sapiens} PDB: 2zkr_6 1ysh_C Back     alignment and structure
>2zkr_f 60S ribosomal protein L7A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} Back     alignment and structure
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A Back     alignment and structure
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii} Back     alignment and structure
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori} Back     alignment and structure
>4a17_F RPL7A, 60S ribosomal protein L9; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_F 4a1c_F 4a1e_F Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 185
d1dt9a2146 d.79.3.2 (A:277-422) C-terminal domain of eukaryot 4e-52
d1x52a1111 d.79.3.2 (A:8-118) Cell division protein pelota {H 7e-20
d2vgna3104 d.79.3.2 (A:278-381) Dom34 {Saccharomyces cerevisi 2e-19
d1dt9a1134 c.55.4.2 (A:143-276) Middle domain of eukaryotic p 9e-17
d2qi2a395 d.79.3.2 (A:244-338) Cell division protein pelota 9e-15
>d1dt9a2 d.79.3.2 (A:277-422) C-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1 {Human (Homo sapiens) [TaxId: 9606]} Length = 146 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Bacillus chorismate mutase-like
superfamily: L30e-like
family: ERF1/Dom34 C-terminal domain-like
domain: C-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  161 bits (410), Expect = 4e-52
 Identities = 98/129 (75%), Positives = 112/129 (86%)

Query: 57  KNKNKMGKYFDEISQDTGKYCFGVEDTLRALELGSVETLICWENLDIQRYVLKNHSTSED 116
           + K  +G+YFDEISQDTGKYCFGVEDTL+ALE+G+VE LI +ENLDI RYVL    T E+
Sbjct: 6   QEKKLIGRYFDEISQDTGKYCFGVEDTLKALEMGAVEILIVYENLDIMRYVLHCQGTEEE 65

Query: 117 RVLHLTPEQEKDKSHFTDKETGVELELVECQPLLEWLANNYKSFGATLEIITDKSQEGSQ 176
           ++L+LTPEQEKDKSHFTDKETG E EL+E  PLLEW ANNYK FGATLEI+TDKSQEGSQ
Sbjct: 66  KILYLTPEQEKDKSHFTDKETGQEHELIESMPLLEWFANNYKKFGATLEIVTDKSQEGSQ 125

Query: 177 FVRGFGGIG 185
           FV+GFGGIG
Sbjct: 126 FVKGFGGIG 134
>d1x52a1 d.79.3.2 (A:8-118) Cell division protein pelota {Human (Homo sapiens) [TaxId: 9606]} Length = 111 Back     information, alignment and structure
>d2vgna3 d.79.3.2 (A:278-381) Dom34 {Saccharomyces cerevisiae [TaxId: 4932]} Length = 104 Back     information, alignment and structure
>d1dt9a1 c.55.4.2 (A:143-276) Middle domain of eukaryotic peptide chain release factor subunit 1, ERF1 {Human (Homo sapiens) [TaxId: 9606]} Length = 134 Back     information, alignment and structure
>d2qi2a3 d.79.3.2 (A:244-338) Cell division protein pelota {Thermoplasma acidophilum [TaxId: 2303]} Length = 95 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query185
d1dt9a2146 C-terminal domain of eukaryotic peptide chain rele 100.0
d2vgna3104 Dom34 {Saccharomyces cerevisiae [TaxId: 4932]} 99.94
d1x52a1111 Cell division protein pelota {Human (Homo sapiens) 99.94
d2qi2a395 Cell division protein pelota {Thermoplasma acidoph 99.91
d1dt9a1134 Middle domain of eukaryotic peptide chain release 99.21
d2vgna2142 Dom34 {Saccharomyces cerevisiae [TaxId: 4932]} 98.71
d2qi2a2117 Cell division protein pelota {Thermoplasma acidoph 98.17
d1vqof1119 Ribosomal protein L7ae {Archaeon Haloarcula marism 95.7
d2aifa1115 Ribosomal protein L7ae {Cryptosporidium parvum [Ta 95.61
d2alea1126 Small nuclear ribonucleoprotein-associated protein 95.6
d1rlga_113 Ribosomal protein L7ae {Archaeon Archaeoglobus ful 95.48
d2ozba1125 Spliceosomal 15.5kd protein {Human (Homo sapiens) 95.34
d2fc3a1124 Ribosomal protein L7ae {Aeropyrum pernix [TaxId: 5 95.33
d1xbia1115 Ribosomal protein L7ae {Archaeon Methanococcus jan 95.32
d1t0kb_97 Eukaryotic ribosomal protein L30 (L30e) {Baker's y 95.13
d1w3ex198 Eukaryotic ribosomal protein L30 (L30e) {Archaeon 94.93
d2bo1a1100 Eukaryotic ribosomal protein L30 (L30e) {Archaeon 94.11
d1gz0a276 RlmB, N-terminal domain {Escherichia coli [TaxId: 92.05
d1lkoa244 Rubrerythrin, C-terminal domain {Desulfovibrio vul 87.33
>d1dt9a2 d.79.3.2 (A:277-422) C-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Bacillus chorismate mutase-like
superfamily: L30e-like
family: ERF1/Dom34 C-terminal domain-like
domain: C-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.2e-38  Score=241.83  Aligned_cols=131  Identities=75%  Similarity=1.196  Sum_probs=105.7

Q ss_pred             hHHHHHHHHHHHHHHhhCCCceEecHHHHHHHHHcCCccEEEeeccCcceeeEeecCCCCceeEEeeCccccccCCcccc
Q psy9094          55 PLKNKNKMGKYFDEISQDTGKYCFGVEDTLRALELGSVETLICWENLDIQRYVLKNHSTSEDRVLHLTPEQEKDKSHFTD  134 (185)
Q Consensus        55 ~~~E~~lve~f~~~l~~~~~~~~yG~~ev~~Ale~GaV~~Llv~d~l~~~r~~~~c~~~~~~~~~~~~~~~~~~~~~~~c  134 (185)
                      +++|+++|++||++|++++|+++||+++|++|+++|||+||||||+|.+.|++++|++|+...+.+..+.+...++.+.|
T Consensus         4 ~~~Ekklv~~f~~el~~d~g~a~YG~~ev~~ALe~GAVetLLise~L~~~r~~~~c~~~~~~~~~~~~~~~~~~~~~~~~   83 (146)
T d1dt9a2           4 FIQEKKLIGRYFDEISQDTGKYCFGVEDTLKALEMGAVEILIVYENLDIMRYVLHCQGTEEEKILYLTPEQEKDKSHFTD   83 (146)
T ss_dssp             HHHHHHHHHHHHHHHHSSSCCEEESHHHHHHHHHSSCCSEEEEESCCCCBCCCC---------CCCBCTTCSSCCCCCC-
T ss_pred             HHHHHHHHHHHHHHHhcCCCcEEECHHHHHHHHHcCCccEEeeeeecccceEEEEcCCCCceEEEEeCcccccccccccC
Confidence            68999999999999999999999999999999999999999999999999999999999988888777776667778899


Q ss_pred             CccCcchhhhccccHHHHHHHHHHhcCCEEEEeCCCCchHHHHhhhcCCcC
Q psy9094         135 KETGVELELVECQPLLEWLANNYKSFGATLEIITDKSQEGSQFVRGFGGIG  185 (185)
Q Consensus       135 ~~~g~~~~~~e~~~~v~~l~e~a~~~g~~v~ivs~~~e~G~~l~~~~GGia  185 (185)
                      |.||.+++.++.++++|||+++|+++|++|+|||++|++|.||+++|||||
T Consensus        84 ~~~~~~~~~~~~~~lie~l~e~a~~~g~~v~iiS~~~eeG~ql~~~fGGia  134 (146)
T d1dt9a2          84 KETGQEHELIESMPLLEWFANNYKKFGATLEIVTDKSQEGSQFVKGFGGIG  134 (146)
T ss_dssp             ----------CCCBHHHHHHHTCTTTTSCEEEECSSSHHHHHHHHTTTTEE
T ss_pred             cccccchhhhhhhhHHHHHHHHHHHcCCeEEEEcCCCHhHHHHHHhCCCEE
Confidence            999999999999999999999999999999999999999999999999996
>d2vgna3 d.79.3.2 (A:278-381) Dom34 {Saccharomyces cerevisiae [TaxId: 4932]} Back     information, alignment and structure
>d1x52a1 d.79.3.2 (A:8-118) Cell division protein pelota {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2qi2a3 d.79.3.2 (A:244-338) Cell division protein pelota {Thermoplasma acidophilum [TaxId: 2303]} Back     information, alignment and structure
>d1dt9a1 c.55.4.2 (A:143-276) Middle domain of eukaryotic peptide chain release factor subunit 1, ERF1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2vgna2 c.55.4.2 (A:136-277) Dom34 {Saccharomyces cerevisiae [TaxId: 4932]} Back     information, alignment and structure
>d2qi2a2 c.55.4.2 (A:127-243) Cell division protein pelota {Thermoplasma acidophilum [TaxId: 2303]} Back     information, alignment and structure
>d1vqof1 d.79.3.1 (F:1-119) Ribosomal protein L7ae {Archaeon Haloarcula marismortui [TaxId: 2238]} Back     information, alignment and structure
>d2aifa1 d.79.3.1 (A:16-130) Ribosomal protein L7ae {Cryptosporidium parvum [TaxId: 5807]} Back     information, alignment and structure
>d2alea1 d.79.3.1 (A:1-126) Small nuclear ribonucleoprotein-associated protein 1, Snu13p {Saccharomyces cerevisiae [TaxId: 4932]} Back     information, alignment and structure
>d1rlga_ d.79.3.1 (A:) Ribosomal protein L7ae {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d2ozba1 d.79.3.1 (A:4-128) Spliceosomal 15.5kd protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2fc3a1 d.79.3.1 (A:4-127) Ribosomal protein L7ae {Aeropyrum pernix [TaxId: 56636]} Back     information, alignment and structure
>d1xbia1 d.79.3.1 (A:2-116) Ribosomal protein L7ae {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1t0kb_ d.79.3.1 (B:) Eukaryotic ribosomal protein L30 (L30e) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1w3ex1 d.79.3.1 (X:1-98) Eukaryotic ribosomal protein L30 (L30e) {Archaeon Thermococcus celer [TaxId: 2264]} Back     information, alignment and structure
>d2bo1a1 d.79.3.1 (A:1-100) Eukaryotic ribosomal protein L30 (L30e) {Archaeon Thermococcus celer [TaxId: 2264]} Back     information, alignment and structure
>d1gz0a2 d.79.3.3 (A:2-77) RlmB, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1lkoa2 g.41.5.1 (A:148-191) Rubrerythrin, C-terminal domain {Desulfovibrio vulgaris [TaxId: 881]} Back     information, alignment and structure