Psyllid ID: psy9114

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------10
Protein Sequence
MNSQITPQPQRHSPQPILVNTPLFCIPGAIESLKVEFEDDEYVLQDLAQISRKNPKTLIINMSSFPQLIPVTMKALVDSGMNMNPQQEGTTIIIPIPK
Secondary Structure (PSIPRED)
cccccccHHHHcccccccccccccccccccccEEEEEcccccccccEEEEEEccccEEEEEcccccccHHHHHHHHHHccccccccccccEEEEcccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccEEcccccccccccccEEEEEccccccHHHEEEEEcccccEEEEEccccHHHHHHHHHHHHHccccccccccccEEEEEccc
Coil and Loop (DISEMBL)
mnsqitpqpqrhspqpilvntplfcipgaieslkvefeddeyVLQDLAQISRKNPKTLIinmssfpqlIPVTMKALVDsgmnmnpqqegttiiipipk
Flexible Loop (DISEMBL)
mnsqitpqpqrhspqpiLVNTPLFCIPGAIESLKVEFEDDEYVLQDLAQISRKNPKTLIINMSSFPQLIPVTMKALVDSGMnmnpqqegttiiipipk
Low Complexity Region (SEG)
MNSQITPQPQRHSPQPILVNTPLFCIPGAIESLKVEFEDDEYVLQDLAQISRKNPKTLIINMSSFPQLIPVTMKALVDSGMNMNPQQEGTTIIIPIPK
Disordered region (IsUnstruct)
****************ILVNTPLFCIPGAIESLKVEFEDDEYVLQDLAQISRKNPKTLIINMSSFPQLIPVTMKALV*********************
Disordered Region (DISOPRED)
***************PILVNTPLFCIPGAIESLKVEFEDDEYVLQDLAQISRKNPKTLIINMSSFPQLIPVTMKALVDSGMNMNPQQEGTTIIIPIPK
Disordered Region (DISEMBL)
*************PQPILVNTPLFCIPGAIESLKVEFEDDEYVLQDLAQISRKNPKTLIINMSSFPQLIPVTMKALVDSGMNMNPQQEGTTIIIPIPK
Disordered Region (DISPRO)
**************QPILVNTPLFCIPGAIESLKVEFEDDEYVLQDLAQISRKNPKTLIINMSSFPQLIPVTMKALVDSGMNMNPQQEGTTIIIPIPK
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MNSQITPQPQRHSPQPILVNTPLFCIPGAIESLKVEFEDDEYVLQDLAQISRKNPKTLIINMSSFPQLIPVTMKALVDSGMNMNPQQEGTTIIIPIPK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

No hits with e-value below 0.001 by BLAST

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	98
FB|FBgn0035980	254	CG4447 [Drosophila melanogaste	0.724	0.279	0.619	1.3e-20
UNIPROTKB|E1BQ58	259	MRRF "Uncharacterized protein"	0.724	0.274	0.436	5.2e-16
UNIPROTKB|Q0VCQ4	262	MRRF "Ribosome-recycling facto	0.734	0.274	0.444	4.9e-14
MGI|MGI:1915121	262	Mrrf "mitochondrial ribosome r	0.734	0.274	0.430	1e-13
RGD|1305897	262	Mrrf "mitochondrial ribosome r	0.734	0.274	0.430	1.3e-13
UNIPROTKB|F1SLQ7	262	LOC100515005 "Uncharacterized	0.734	0.274	0.430	1.6e-13
UNIPROTKB|Q96E11	262	MRRF "Ribosome-recycling facto	0.734	0.274	0.416	2.1e-13
ZFIN|ZDB-GENE-040704-12	257	mrrf "mitochondrial ribosome r	0.734	0.280	0.416	5.6e-13
UNIPROTKB|J9P265	262	MRRF "Uncharacterized protein"	0.734	0.274	0.416	7.1e-13
UNIPROTKB|Q4TT42	262	MRRFP1 "Protein MRRFP1" [Homo	0.734	0.274	0.416	1.6e-12

FB|FBgn0035980 CG4447 [Drosophila melanogaster (taxid:7227)]

 Score = 243 (90.6 bits), Expect = 1.3e-20, P = 1.3e-20
 Identities = 44/71 (61%), Positives = 59/71 (83%)

Query:    28 GAIESLKVEFEDDEYVLQDLAQISRKNPKTLIINMSSFPQLIPVTMKALVDSGMNMNPQQ 87
             GAI++L+++ +  E+ LQ+LAQISRKNPKT+I+NM  FPQ IP  +KA+  SGMN+NPQQ
Sbjct:   106 GAIDTLRIKVDGQEHELQELAQISRKNPKTIIVNMIGFPQTIPDVLKAIEKSGMNLNPQQ 165

Query:    88 EGTTIIIPIPK 98
             +GTT+ IPIPK
Sbjct:   166 DGTTLFIPIPK 176

GO:0006412 "translation" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

UNIPROTKB|E1BQ58 MRRF "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 180 (68.4 bits), Expect = 5.2e-16, Sum P(2) = 5.2e-16
 Identities = 31/71 (43%), Positives = 52/71 (73%)

Query:    28 GAIESLKVEFEDDEYVLQDLAQISRKNPKTLIINMSSFPQLIPVTMKALVDSGMNMNPQQ 87
             GA++ + V  +D ++ L  L QIS+K+P+ +++NM+SFP+     MKA+ +SGMN+NP+ 
Sbjct:   111 GALDHIIVTTKDGKFPLNQLGQISQKSPQLIVVNMTSFPESTAAAMKAIRESGMNLNPEV 170

Query:    88 EGTTIIIPIPK 98
             +GT I +P+PK
Sbjct:   171 DGTLIRVPVPK 181

GO:0006412 "translation" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

UNIPROTKB|Q0VCQ4 MRRF "Ribosome-recycling factor, mitochondrial" [Bos taurus (taxid:9913)]

 Score = 181 (68.8 bits), Expect = 4.9e-14, P = 4.9e-14
 Identities = 32/72 (44%), Positives = 52/72 (72%)

Query:    27 PGAIESLKVEFEDDEYVLQDLAQISRKNPKTLIINMSSFPQLIPVTMKALVDSGMNMNPQ 86
             PGA++++ V   D +  L  ++QIS K+P+ +++NM+SFP+     +KA+ +SGMN+NP+
Sbjct:   113 PGALDNITVVTADGKLPLNQISQISMKSPQLILVNMASFPECTAAAIKAIRESGMNLNPE 172

Query:    87 QEGTTIIIPIPK 98
              EGT I +PIPK
Sbjct:   173 VEGTLIRVPIPK 184

GO:0005739 "mitochondrion" evidence=IEA

GO:0006412 "translation" evidence=IEA

MGI|MGI:1915121 Mrrf "mitochondrial ribosome recycling factor" [Mus musculus (taxid:10090)]

 Score = 178 (67.7 bits), Expect = 1.0e-13, P = 1.0e-13
 Identities = 31/72 (43%), Positives = 50/72 (69%)

Query:    27 PGAIESLKVEFEDDEYVLQDLAQISRKNPKTLIINMSSFPQLIPVTMKALVDSGMNMNPQ 86
             PG+++ + V   D +  L  + QIS K+P+ +++NM+SFP+     +KA+ +SGMN+NP+
Sbjct:   113 PGSLDHITVVTADGKVALNQIGQISMKSPQVILVNMASFPECTAAAIKAIRESGMNLNPE 172

Query:    87 QEGTTIIIPIPK 98
              EGT I +PIPK
Sbjct:   173 VEGTLIRVPIPK 184

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=IDA

GO:0006412 "translation" evidence=IEA

GO:0032790 "ribosome disassembly" evidence=ISO

RGD|1305897 Mrrf "mitochondrial ribosome recycling factor" [Rattus norvegicus (taxid:10116)]

 Score = 177 (67.4 bits), Expect = 1.3e-13, P = 1.3e-13
 Identities = 31/72 (43%), Positives = 50/72 (69%)

Query:    27 PGAIESLKVEFEDDEYVLQDLAQISRKNPKTLIINMSSFPQLIPVTMKALVDSGMNMNPQ 86
             PG+++ + V   D +  L  + QIS K+P+ +++NM+SFP+     +KA+ +SGMN+NP+
Sbjct:   113 PGSLDHITVVTADGKLALNQIGQISMKSPQLILVNMASFPECTAAAIKAIRESGMNLNPE 172

Query:    87 QEGTTIIIPIPK 98
              EGT I +PIPK
Sbjct:   173 VEGTLIRVPIPK 184

GO:0005739 "mitochondrion" evidence=IEA;ISO

GO:0006412 "translation" evidence=IEA

GO:0032790 "ribosome disassembly" evidence=ISO

UNIPROTKB|F1SLQ7 LOC100515005 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 176 (67.0 bits), Expect = 1.6e-13, P = 1.6e-13
 Identities = 31/72 (43%), Positives = 49/72 (68%)

Query:    27 PGAIESLKVEFEDDEYVLQDLAQISRKNPKTLIINMSSFPQLIPVTMKALVDSGMNMNPQ 86
             PG+++ + V   D +  L  + QIS K+P+ +++NM+SFP+     +KA+ +SGMN+NP 
Sbjct:   113 PGSLDQITVVTADGKLALNQIGQISMKSPQLILVNMASFPECTAAAIKAIRESGMNLNPD 172

Query:    87 QEGTTIIIPIPK 98
              EGT I +PIPK
Sbjct:   173 VEGTLIRVPIPK 184

GO:0005739 "mitochondrion" evidence=IEA

GO:0006412 "translation" evidence=IEA

UNIPROTKB|Q96E11 MRRF "Ribosome-recycling factor, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 175 (66.7 bits), Expect = 2.1e-13, P = 2.1e-13
 Identities = 30/72 (41%), Positives = 51/72 (70%)

Query:    27 PGAIESLKVEFEDDEYVLQDLAQISRKNPKTLIINMSSFPQLIPVTMKALVDSGMNMNPQ 86
             PG+++ + V   D +  L  ++QIS K+P+ +++NM+SFP+     +KA+ +SGMN+NP+
Sbjct:   113 PGSLDKIAVVTADGKLALNQISQISMKSPQLILVNMASFPECTAAAIKAIRESGMNLNPE 172

Query:    87 QEGTTIIIPIPK 98
              EGT I +PIP+
Sbjct:   173 VEGTLIRVPIPQ 184

GO:0006412 "translation" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0032790 "ribosome disassembly" evidence=IDA

ZFIN|ZDB-GENE-040704-12 mrrf "mitochondrial ribosome recycling factor" [Danio rerio (taxid:7955)]

 Score = 171 (65.3 bits), Expect = 5.6e-13, P = 5.6e-13
 Identities = 30/72 (41%), Positives = 49/72 (68%)

Query:    27 PGAIESLKVEFEDDEYVLQDLAQISRKNPKTLIINMSSFPQLIPVTMKALVDSGMNMNPQ 86
             PGA++ + V  +D ++ L  L QIS K+P+ L++NM+ FP+ +    +AL +S M +NP+
Sbjct:   108 PGALDHITVTTKDGKFPLNQLGQISMKSPQLLVVNMTGFPEAMVAVTRALRESSMGLNPE 167

Query:    87 QEGTTIIIPIPK 98
              EGT I +P+PK
Sbjct:   168 VEGTIIRVPVPK 179

GO:0006412 "translation" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

UNIPROTKB|J9P265 MRRF "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 170 (64.9 bits), Expect = 7.1e-13, P = 7.1e-13
 Identities = 30/72 (41%), Positives = 49/72 (68%)

Query:    27 PGAIESLKVEFEDDEYVLQDLAQISRKNPKTLIINMSSFPQLIPVTMKALVDSGMNMNPQ 86
             PG+++ + V   + +  L  + QIS K+P  +++NM+SFP+     +KA+ +SGMN+NP+
Sbjct:   113 PGSLDRITVVTANGKLALNQIGQISMKSPHLILVNMASFPECTAAAIKAIRESGMNLNPE 172

Query:    87 QEGTTIIIPIPK 98
              EGT I +PIPK
Sbjct:   173 VEGTLIRVPIPK 184

GO:0006412 "translation" evidence=IEA

UNIPROTKB|Q4TT42 MRRFP1 "Protein MRRFP1" [Homo sapiens (taxid:9606)]

 Score = 167 (63.8 bits), Expect = 1.6e-12, P = 1.6e-12
 Identities = 30/72 (41%), Positives = 49/72 (68%)

Query:    27 PGAIESLKVEFEDDEYVLQDLAQISRKNPKTLIINMSSFPQLIPVTMKALVDSGMNMNPQ 86
             PG+++ + V   D +  L  + QIS K P+ +++NM+SFP+     +KA+ +SGMN+NP+
Sbjct:   113 PGSLDKIAVVTADGKLALNQIRQISVKLPQLILVNMASFPEFTVAAIKAIRESGMNLNPE 172

Query:    87 QEGTTIIIPIPK 98
              EGT I +PIP+
Sbjct:   173 VEGTLIRVPIPQ 184

GO:0006412 "translation" evidence=IEA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	98
pfam01765	165	pfam01765, RRF, Ribosome recycling factor	3e-16
cd00520	179	cd00520, RRF, Ribosome recycling factor (RRF)	1e-12
PRK00083	185	PRK00083, frr, ribosome recycling factor; Reviewed	4e-05
COG0233	187	COG0233, Frr, Ribosome recycling factor [Translati	5e-05
TIGR00496	176	TIGR00496, frr, ribosome recycling factor	0.002

>gnl|CDD|216689 pfam01765, RRF, Ribosome recycling factor

 Score = 69.1 bits (170), Expect = 3e-16
 Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 1/72 (1%)

Query: 27 PGAIESLKVEFEDDEYVLQDLAQISRKNPKTLIINMSSFPQLIPVTMKALVDSGMNMNPQ 86
          P  ++ ++V++      L  LA IS    +TL+I       LI    KA++ S + +NPQ
Sbjct: 16 PSLLDGIRVDYYGSPTPLNQLASISVPEARTLLITPWD-KSLIKAIEKAILASDLGLNPQ 74

Query: 87 QEGTTIIIPIPK 98
           +G  I IPIP 
Sbjct: 75 NDGQVIRIPIPP 86

The ribosome recycling factor (RRF / ribosome release factor) dissociates the ribosome from the mRNA after termination of translation, and is essential bacterial growth. Thus ribosomes are "recycled" and ready for another round of protein synthesis. Length = 165

>gnl|CDD|238288 cd00520, RRF, Ribosome recycling factor (RRF)

 Score = 60.0 bits (146), Expect = 1e-12
 Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 1/72 (1%)

Query: 27  PGAIESLKVEFEDDEYVLQDLAQISRKNPKTLIINMSSFPQLIPVTMKALVDSGMNMNPQ 86
           P  ++S+ VE+      L  LA IS   P+T++IN       I    KA+++S + +NP 
Sbjct: 30  PALLDSITVEYYGAPTPLNQLASISVPEPRTIVINPFDK-SAIKAIEKAILNSDLGLNPN 88

Query: 87  QEGTTIIIPIPK 98
            +G  I + +P 
Sbjct: 89  NDGAVIRVNLPP 100

Ribosome recycling factor dissociates the posttermination complex, composed of the ribosome, deacylated tRNA, and mRNA, after termination of translation. Thus ribosomes are "recycled" and ready for another round of protein synthesis. RRF is believed to bind the ribosome at the A-site in a manner that mimics tRNA, but the specific mechanisms remain unclear. RRF is essential for bacterial growth. It is not necessary for cell growth in archaea or eukaryotes, but is found in mitochondria or chloroplasts of some eukaryotic species. Length = 179

>gnl|CDD|178850 PRK00083, frr, ribosome recycling factor; Reviewed

 Score = 39.7 bits (94), Expect = 4e-05
 Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 7/74 (9%)

Query: 27  PGAIESLKVEFEDDEYVLQDLAQISRKNPKTLIIN---MSSFPQLIPVTMKALVDSGMNM 83
           P  ++ +KV++      L  +A IS    +TL+I     S    ++    KA+  S + +
Sbjct: 34  PSLLDGIKVDYYGSPTPLNQVASISVPEARTLLIQPWDKS----MLKAIEKAIRASDLGL 89

Query: 84  NPQQEGTTIIIPIP 97
           NP  +GT I +PIP
Sbjct: 90  NPSNDGTVIRLPIP 103

Length = 185

>gnl|CDD|223311 COG0233, Frr, Ribosome recycling factor [Translation, ribosomal structure and biogenesis]

 Score = 39.5 bits (93), Expect = 5e-05
 Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 3/72 (4%)

Query: 27  PGAIESLKVEFEDDEYVLQDLAQISRKNPKTLIINMSSF-PQLIPVTMKALVDSGMNMNP 85
           P  ++ + VE+      L  LA IS    +TL+I    F   ++    KA++ S + +NP
Sbjct: 36  PSLLDRITVEYYGSPTPLNQLASISVPEARTLVI--KPFDKSMVKAIEKAILASNLGLNP 93

Query: 86  QQEGTTIIIPIP 97
             +G  I +P+P
Sbjct: 94  NNDGNVIRVPLP 105

Length = 187

>gnl|CDD|129587 TIGR00496, frr, ribosome recycling factor

 Score = 34.7 bits (80), Expect = 0.002
 Identities = 18/71 (25%), Positives = 34/71 (47%), Gaps = 1/71 (1%)

Query: 27 PGAIESLKVEFEDDEYVLQDLAQISRKNPKTLIINMSSFPQLIPVTMKALVDSGMNMNPQ 86
          P  ++ + VE+      L+ LA ++  + +TL+I        I    KA+  S + +NP 
Sbjct: 25 PSLLDRILVEYYGAPTPLRQLASVTVPDARTLVIQPFD-KSNINAIEKAIQRSDLGLNPN 83

Query: 87 QEGTTIIIPIP 97
           +G+ I +  P
Sbjct: 84 NDGSVIRVNFP 94

This model finds only eubacterial proteins. Mitochondrial and/or chloroplast forms might be expected but are not currently known. This protein was previously called ribosome releasing factor. By releasing ribosomes from mRNA at the end of protein biosynthesis, it prevents inappropriate translation from 3-prime regions of the mRNA and frees the ribosome for new rounds of translation. EGAD|53116|YHR038W is part of the frr superfamily [Protein synthesis, Translation factors]. Length = 176

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	98
COG0233	187	Frr Ribosome recycling factor [Translation, riboso	100.0
PRK00083	185	frr ribosome recycling factor; Reviewed	100.0
TIGR00496	176	frr ribosome recycling factor. This model finds on	100.0
cd00520	179	RRF Ribosome recycling factor (RRF). Ribosome recy	99.98
PF01765	165	RRF: Ribosome recycling factor; InterPro: IPR02358	99.97
KOG4759|consensus	263		99.94

>COG0233 Frr Ribosome recycling factor [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=1e-34  Score=214.14  Aligned_cols=88  Identities=23%  Similarity=0.371  Sum_probs=86.1

Q ss_pred             ccccccccccccccccCcCCCceeEEEEcCCcccccceeeeeecCCcEEEEEeccCCCchHHHHHHHHhCCCCCCccCCC
Q psy9114          10 QRHSPQPILVNTPLFCIPGAIESLKVEFEDDEYVLQDLAQISRKNPKTLIINMSSFPQLIPVTMKALVDSGMNMNPQQEG   89 (98)
Q Consensus        10 ~~~~~~~~~k~~tgRa~p~~ld~I~V~~yg~~~pL~~lAqIsv~~~~~l~I~~~D~~~~ik~I~kAI~~S~LglnP~~dg   89 (98)
                      -++|+++|+++|||||||++||+|.|+|||+++||+|||+|+++++|+|+|+||| ++++++|+|||++|||||||.+||
T Consensus        19 ~e~l~~~l~~iRTGRanp~lld~i~VeyYG~~tPl~qvAsIsvpe~r~l~I~p~D-ks~~~~IekaI~~snLglnP~~dG   97 (187)
T COG0233          19 LEALKNELSKIRTGRANPSLLDRITVEYYGSPTPLNQLASISVPEARTLVIKPFD-KSMVKAIEKAILASNLGLNPNNDG   97 (187)
T ss_pred             HHHHHHHHHhhhcCCCChHHhcceeeeecCCCCcHHHHhhccCCCcceEEeecCc-cchHHHHHHHHHHcCCCCCcCcCC
Confidence            3689999999999999999999999999999999999999999999999999999 999999999999999999999999


Q ss_pred             CEEEEcCCC
Q psy9114          90 TTIIIPIPK   98 (98)
Q Consensus        90 ~~Iri~iP~   98 (98)
                      +.|||+||+
T Consensus        98 ~~IRv~~P~  106 (187)
T COG0233          98 NVIRVPLPP  106 (187)
T ss_pred             CeEEecCCC
Confidence            999999996

>PRK00083 frr ribosome recycling factor; Reviewed

Probab=100.00  E-value=4e-34  Score=210.36  Aligned_cols=88  Identities=24%  Similarity=0.369  Sum_probs=86.1

Q ss_pred             ccccccccccccccccCcCCCceeEEEEcCCcccccceeeeeecCCcEEEEEeccCCCchHHHHHHHHhCCCCCCccCCC
Q psy9114          10 QRHSPQPILVNTPLFCIPGAIESLKVEFEDDEYVLQDLAQISRKNPKTLIINMSSFPQLIPVTMKALVDSGMNMNPQQEG   89 (98)
Q Consensus        10 ~~~~~~~~~k~~tgRa~p~~ld~I~V~~yg~~~pL~~lAqIsv~~~~~l~I~~~D~~~~ik~I~kAI~~S~LglnP~~dg   89 (98)
                      -+||+++|+++||||+||++||+|+|+|||+++||++||+|+++++++|+|+||| ++++++|++||++||||+||+.||
T Consensus        17 i~~l~~~l~~irtGra~p~lld~I~V~~yg~~~pL~~lA~Isv~~~~~l~I~p~D-~~~i~~I~kAI~~s~lgl~P~~dg   95 (185)
T PRK00083         17 VEALKRELAKIRTGRANPSLLDGIKVDYYGSPTPLNQVASISVPEARTLLIQPWD-KSMLKAIEKAIRASDLGLNPSNDG   95 (185)
T ss_pred             HHHHHHHHHHHhcCCCCHHHcCCeEEEECCCCccHHHceeeecCCCCEEEEEeCC-HhHHHHHHHHHHHCCCCCCcccCC
Confidence            3689999999999999999999999999999999999999999999999999999 999999999999999999999999


Q ss_pred             CEEEEcCCC
Q psy9114          90 TTIIIPIPK   98 (98)
Q Consensus        90 ~~Iri~iP~   98 (98)
                      +.|||+||+
T Consensus        96 ~~Iri~iP~  104 (185)
T PRK00083         96 TVIRLPIPP  104 (185)
T ss_pred             CEEEecCCC
Confidence            999999995

>TIGR00496 frr ribosome recycling factor

Probab=100.00  E-value=4.8e-34  Score=208.56  Aligned_cols=88  Identities=20%  Similarity=0.298  Sum_probs=86.3

Q ss_pred             ccccccccccccccccCcCCCceeEEEEcCCcccccceeeeeecCCcEEEEEeccCCCchHHHHHHHHhCCCCCCccCCC
Q psy9114          10 QRHSPQPILVNTPLFCIPGAIESLKVEFEDDEYVLQDLAQISRKNPKTLIINMSSFPQLIPVTMKALVDSGMNMNPQQEG   89 (98)
Q Consensus        10 ~~~~~~~~~k~~tgRa~p~~ld~I~V~~yg~~~pL~~lAqIsv~~~~~l~I~~~D~~~~ik~I~kAI~~S~LglnP~~dg   89 (98)
                      -+||+++|+++|+||+||++||+|+|+|||+++||+++|||+++++++|+|+||| ++++++|++||++||||+||+.||
T Consensus         8 i~~~~~~l~~irtGra~p~ild~I~V~~yg~~~pL~~lA~vsv~~~~~l~I~p~D-~~~~~~I~kAI~~s~lglnP~~dg   86 (176)
T TIGR00496         8 IQALKRELSKIRTGRANPSLLDRILVEYYGAPTPLRQLASVTVPDARTLVIQPFD-KSNINAIEKAIQRSDLGLNPNNDG   86 (176)
T ss_pred             HHHHHHHHHHHhcCCCCHHHhCCeEEEeCCCcccHHHceeeecCCCCEEEEecCC-hhhHHHHHHHHHHCCCCCCcccCC
Confidence            4789999999999999999999999999999999999999999999999999999 999999999999999999999999


Q ss_pred             CEEEEcCCC
Q psy9114          90 TTIIIPIPK   98 (98)
Q Consensus        90 ~~Iri~iP~   98 (98)
                      +.|||+||+
T Consensus        87 ~~Iri~iP~   95 (176)
T TIGR00496        87 SVIRVNFPP   95 (176)
T ss_pred             CEEEecCCC
Confidence            999999996

This model finds only eubacterial proteins. Mitochondrial and/or chloroplast forms might be expected but are not currently known. This protein was previously called ribosome releasing factor. By releasing ribosomes from mRNA at the end of protein biosynthesis, it prevents inappropriate translation from 3-prime regions of the mRNA and frees the ribosome for new rounds of translation. EGAD|53116|YHR038W is part of the frr superfamily.

>cd00520 RRF Ribosome recycling factor (RRF)

Probab=99.98  E-value=2.2e-33  Score=205.01  Aligned_cols=88  Identities=25%  Similarity=0.377  Sum_probs=86.0

Q ss_pred             ccccccccccccccccCcCCCceeEEEEcCCcccccceeeeeecCCcEEEEEeccCCCchHHHHHHHHhCCCCCCccCCC
Q psy9114          10 QRHSPQPILVNTPLFCIPGAIESLKVEFEDDEYVLQDLAQISRKNPKTLIINMSSFPQLIPVTMKALVDSGMNMNPQQEG   89 (98)
Q Consensus        10 ~~~~~~~~~k~~tgRa~p~~ld~I~V~~yg~~~pL~~lAqIsv~~~~~l~I~~~D~~~~ik~I~kAI~~S~LglnP~~dg   89 (98)
                      -+||+++|+++|+||+||++||+|+|+|||+++||+++|+|+++++++|+|+||| ++++++|++||++||||+||++||
T Consensus        13 i~~~~~~l~~irtGrasp~lld~I~V~~yg~~~pL~~lA~Vsv~~~~~l~I~p~D-~~~i~~I~kAI~~s~l~l~P~~dg   91 (179)
T cd00520          13 LEALKEELNKIRTGRANPALLDSITVEYYGAPTPLNQLASISVPEPRTIVINPFD-KSAIKAIEKAILNSDLGLNPNNDG   91 (179)
T ss_pred             HHHHHHHHHHHhcCCCCHHHhCCeEEEeCCCCccHHHceeeecCCCCEEEEeecc-hhhHHHHHHHHHHCCCCCCcCcCC
Confidence            3689999999999999999999999999999999999999999999999999999 899999999999999999999999


Q ss_pred             CEEEEcCCC
Q psy9114          90 TTIIIPIPK   98 (98)
Q Consensus        90 ~~Iri~iP~   98 (98)
                      +.|||+||+
T Consensus        92 ~~iri~iP~  100 (179)
T cd00520          92 AVIRVNLPP  100 (179)
T ss_pred             CEEEecCCC
Confidence            999999996

Ribosome recycling factor dissociates the posttermination complex, composed of the ribosome, deacylated tRNA, and mRNA, after termination of translation. Thus ribosomes are "recycled" and ready for another round of protein synthesis. RRF is believed to bind the ribosome at the A-site in a manner that mimics tRNA, but the specific mechanisms remain unclear. RRF is essential for bacterial growth. It is not necessary for cell growth in archaea or eukaryotes, but is found in mitochondria or chloroplasts of some eukaryotic species.

>PF01765 RRF: Ribosome recycling factor; InterPro: IPR023584 The ribosome recycling factor or ribosome release factor (RRF) dissociates ribosomes from mRNA after termination of translation, and is essential for bacterial growth []

Probab=99.97  E-value=2.9e-31  Score=190.91  Aligned_cols=86  Identities=36%  Similarity=0.568  Sum_probs=82.8

Q ss_pred             ccccccccccccccCcCCCceeEEEEcCCcccccceeeeeecCCcEEEEEeccCCCchHHHHHHHHhCCCCCCccCCCCE
Q psy9114          12 HSPQPILVNTPLFCIPGAIESLKVEFEDDEYVLQDLAQISRKNPKTLIINMSSFPQLIPVTMKALVDSGMNMNPQQEGTT   91 (98)
Q Consensus        12 ~~~~~~~k~~tgRa~p~~ld~I~V~~yg~~~pL~~lAqIsv~~~~~l~I~~~D~~~~ik~I~kAI~~S~LglnP~~dg~~   91 (98)
                      ||+++|.++|+||+||++||+|+|+|||+.+||+++|||+++++++|+|+||| ++++++|++||++|+||+||+.||..
T Consensus         1 ~~~~~l~~ir~gr~~p~~ld~i~V~~~g~~~~L~~lA~V~~~~~~~l~I~~~d-~~~i~~I~kAI~~s~l~l~p~~d~~~   79 (165)
T PF01765_consen    1 HFKEELSKIRTGRANPAILDNIKVEYYGSKVPLNELAQVSVKDPRTLVITPYD-PSLIKAIEKAIQKSNLNLNPQNDGNT   79 (165)
T ss_dssp             HHHHHHHTSSSSSSSGGGGTTSEEEETTEEEEGGGTEEEEEEETTEEEEEESS-TTHHHHHHHHHHHTTSSSEEEEETTE
T ss_pred             ChHHHHHHHhcCCCCHHHhCCeEEEECCCCccHHHceeeecCCCCEEEEEecc-ccchHHHHHHHHHCCCCCCcccCCcE
Confidence            78999999999999999999999999999999999999999999999999999 99999999999999999999999999


Q ss_pred             EEEcCCC
Q psy9114          92 IIIPIPK   98 (98)
Q Consensus        92 Iri~iP~   98 (98)
                      |+|+||+
T Consensus        80 i~v~iP~   86 (165)
T PF01765_consen   80 IRVPIPP   86 (165)
T ss_dssp             EEEE--S
T ss_pred             EEEECCC
Confidence            9999996

Thus ribosomes are 'recycled' and ready for another round of protein synthesis. This entry represents a domain found in ribosome recycling factors.; PDB: 3R8N_Y 1Y69_8 1ISE_A 1EK8_A 1DD5_A 1WIH_A 2Z4L_6 2QBE_6 2V46_Y 1EH1_A ....

>KOG4759|consensus

Probab=99.94  E-value=1.4e-27  Score=183.40  Aligned_cols=88  Identities=28%  Similarity=0.439  Sum_probs=86.3

Q ss_pred             cccccccccccccccCcCCCceeEEEEcCCcccccceeeeeecCCcEEEEEeccCCCchHHHHHHHHhCCCCCCccCCCC
Q psy9114          11 RHSPQPILVNTPLFCIPGAIESLKVEFEDDEYVLQDLAQISRKNPKTLIINMSSFPQLIPVTMKALVDSGMNMNPQQEGT   90 (98)
Q Consensus        11 ~~~~~~~~k~~tgRa~p~~ld~I~V~~yg~~~pL~~lAqIsv~~~~~l~I~~~D~~~~ik~I~kAI~~S~LglnP~~dg~   90 (98)
                      +.++++|+++++||.+|++||+|.|++||.+.||++||+||.+++++|+|+|||||.++++|+|||.+|+|||||+.||.
T Consensus        97 e~lke~~~k~~~gr~~~~~~d~I~vk~~g~~~~L~~IA~vS~K~p~~ilIn~~d~p~~ikai~kAI~~S~lnltP~~dg~  176 (263)
T KOG4759|consen   97 EALKEDFNKIRQGRFNPGMLDKIVVKANGPKRPLNEIAQVSLKGPQTILINPFDFPVDIKAILKAIEASGLNLTPNLDGT  176 (263)
T ss_pred             HHHHHHHHHhhccCCChhhhhheeeecCCCcccHHHHHHHhcCCCceEEEecccCchHHHHHHHHHHhCCCCCCcCCCCc
Confidence            56889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEcCCC
Q psy9114          91 TIIIPIPK   98 (98)
Q Consensus        91 ~Iri~iP~   98 (98)
                      +|+|++|+
T Consensus       177 ~l~vsiP~  184 (263)
T KOG4759|consen  177 VLRVSIPP  184 (263)
T ss_pred             EEEecCCC
Confidence            99999996

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	98
1wih_A	84	Mitochondrial ribosome recycling factor; structura	9e-16

>1wih_A Mitochondrial ribosome recycling factor; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.67.3.1 Length = 84

 Score = 65.0 bits (159), Expect = 9e-16
 Identities = 29/72 (40%), Positives = 47/72 (65%)

Query: 27 PGAIESLKVEFEDDEYVLQDLAQISRKNPKTLIINMSSFPQLIPVTMKALVDSGMNMNPQ 86
             ++ + V   D +  L  + QIS K+P+ +++NM+SFP+     +KA+ +SGMN+NP+
Sbjct: 5  SSGLDHITVVTADGKVALNQIGQISMKSPQVILVNMASFPECTAAAIKAIRESGMNLNPE 64

Query: 87 QEGTTIIIPIPK 98
           EGT I +PIPK
Sbjct: 65 VEGTLIRVPIPK 76

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	98
1dd5_A	185	Ribosome recycling factor; three-helix bundle, bet	100.0
1ise_A	185	Ribosome recycling factor; translation; 2.20A {Esc	100.0
1is1_A	185	Ribosome recycling factor; translation; 2.20A {Vib	100.0
1wqg_A	185	Ribosome recycling factor; translation factor, tri	100.0
1eh1_A	185	Ribosome recycling factor; translation, hinge vari	100.0
4gfq_A	209	Ribosome-recycling factor; structural genomics, ni	100.0
1wih_A	84	Mitochondrial ribosome recycling factor; structura	100.0
1ge9_A	184	Ribosome recycling factor; three-helix bundle; NMR	100.0

>1dd5_A Ribosome recycling factor; three-helix bundle, beta-alpha-beta sandwich; 2.55A {Thermotoga maritima} SCOP: d.67.3.1 PDB: 1t1m_C

Probab=100.00  E-value=3.5e-36  Score=220.68  Aligned_cols=88  Identities=22%  Similarity=0.298  Sum_probs=86.2

Q ss_pred             ccccccccccccccccCcCCCceeEEEEcCCcccccceeeeeecCCcEEEEEeccCCCchHHHHHHHHhCCCCCCccCCC
Q psy9114          10 QRHSPQPILVNTPLFCIPGAIESLKVEFEDDEYVLQDLAQISRKNPKTLIINMSSFPQLIPVTMKALVDSGMNMNPQQEG   89 (98)
Q Consensus        10 ~~~~~~~~~k~~tgRa~p~~ld~I~V~~yg~~~pL~~lAqIsv~~~~~l~I~~~D~~~~ik~I~kAI~~S~LglnP~~dg   89 (98)
                      -++|+++|+++|||||||++||+|+|+|||+++||+|||+|+++++|+|+|+||| ++++++|+|||++|+|||||++||
T Consensus        17 ie~lk~~l~~iRtGRa~p~lld~I~V~yyG~~~pL~qvA~Isv~~~r~l~I~p~D-~~~i~~IekAI~~SdLglnP~~dG   95 (185)
T 1dd5_A           17 LEKIEDELRKMRTGKPSPAILEEIKVDYYGVPTPVNQLATISISEERTLVIKPWD-KSVLSLIEKAINASDLGLNPINDG   95 (185)
T ss_dssp             HHHHHHHHHHSCCSSCCGGGGTTCEEEETTEEEEGGGSEEEEECSTTEEEEEESS-TTHHHHHHHHHHHSSSCCCCEECS
T ss_pred             HHHHHHHHHHHhcCCCCHHHhCCeEEEECCCcccHHHceeeecCCCCEEEEEecC-HhHHHHHHHHHHHcCCCCCcccCC
Confidence            3689999999999999999999999999999999999999999999999999999 999999999999999999999999


Q ss_pred             CEEEEcCCC
Q psy9114          90 TTIIIPIPK   98 (98)
Q Consensus        90 ~~Iri~iP~   98 (98)
                      +.|||+||+
T Consensus        96 ~~Iri~iP~  104 (185)
T 1dd5_A           96 NVIRLVFPS  104 (185)
T ss_dssp             SCEEEECCC
T ss_pred             CEEEEeCCC
Confidence            999999996

>1ise_A Ribosome recycling factor; translation; 2.20A {Escherichia coli} SCOP: d.67.3.1 PDB: 1ek8_A* 1zn0_A 1zn1_A 2rdo_8

Probab=100.00  E-value=3.6e-36  Score=220.58  Aligned_cols=88  Identities=24%  Similarity=0.388  Sum_probs=86.2

Q ss_pred             ccccccccccccccccCcCCCceeEEEEcCCcccccceeeeeecCCcEEEEEeccCCCchHHHHHHHHhCCCCCCccCCC
Q psy9114          10 QRHSPQPILVNTPLFCIPGAIESLKVEFEDDEYVLQDLAQISRKNPKTLIINMSSFPQLIPVTMKALVDSGMNMNPQQEG   89 (98)
Q Consensus        10 ~~~~~~~~~k~~tgRa~p~~ld~I~V~~yg~~~pL~~lAqIsv~~~~~l~I~~~D~~~~ik~I~kAI~~S~LglnP~~dg   89 (98)
                      -++|+++|+++|||||||++||+|+|+|||+++||+|||+|+++++|+|+|+||| ++++++|+|||++|+|||||++||
T Consensus        17 ie~lk~~l~~iRtGRa~p~lld~I~V~yyG~~~pL~qvA~Isv~~~r~l~I~p~D-~~~i~~IekAI~~SdLglnP~~dG   95 (185)
T 1ise_A           17 VEAFKTQISKIRTGRASPSLLDGIVVEYYGTPTPLRQLASVTVEDSRTLKINVFD-RSMSPAVEKAIMASDLGLNPNSAG   95 (185)
T ss_dssp             HHHHHHHHTTSCCSSCCGGGGTTCEEEETTEEEEGGGTEEEEEEETTEEEEEESS-GGGHHHHHHHHHTTCTTCCCEESS
T ss_pred             HHHHHHHHHHHhcCCCCHHHhCCeEEEeCCCcccHHHceeeecCCCCEEEEeccC-HhHHHHHHHHHHHcCCCCCcccCC
Confidence            3689999999999999999999999999999999999999999999999999999 999999999999999999999999


Q ss_pred             CEEEEcCCC
Q psy9114          90 TTIIIPIPK   98 (98)
Q Consensus        90 ~~Iri~iP~   98 (98)
                      +.|||+||+
T Consensus        96 ~~Iri~iP~  104 (185)
T 1ise_A           96 SDIRVPLPP  104 (185)
T ss_dssp             SEEEEECCC
T ss_pred             CEEEEeCCC
Confidence            999999996

>1is1_A Ribosome recycling factor; translation; 2.20A {Vibrio parahaemolyticus} SCOP: d.67.3.1 PDB: 3r8n_Y

Probab=100.00  E-value=3.8e-36  Score=220.43  Aligned_cols=88  Identities=22%  Similarity=0.328  Sum_probs=86.2

Q ss_pred             ccccccccccccccccCcCCCceeEEEEcCCcccccceeeeeecCCcEEEEEeccCCCchHHHHHHHHhCCCCCCccCCC
Q psy9114          10 QRHSPQPILVNTPLFCIPGAIESLKVEFEDDEYVLQDLAQISRKNPKTLIINMSSFPQLIPVTMKALVDSGMNMNPQQEG   89 (98)
Q Consensus        10 ~~~~~~~~~k~~tgRa~p~~ld~I~V~~yg~~~pL~~lAqIsv~~~~~l~I~~~D~~~~ik~I~kAI~~S~LglnP~~dg   89 (98)
                      -++|+++|+++|||||||++||+|+|+|||+++||+|||+|+++++|+|+|+||| ++++++|+|||++|+|||||++||
T Consensus        17 ie~lk~~l~~iRtGRa~p~lld~I~V~yyG~~~pL~qvA~Isv~~~r~l~I~p~D-~~~i~~IekAI~~SdLglnP~~dG   95 (185)
T 1is1_A           17 VEALKNNLSKVRTGRAHPSLLSGISVEYYGAATPLNQVANVVAEDARTLAITVFD-KELTQKVEKAIMMSDLGLNPMSAG   95 (185)
T ss_dssp             HHHHHHHHTTSCCSSCCGGGGTTCEEEETTEEEEGGGTEEEEEEETTEEEEEESS-TTTHHHHHHHHHHTTSSCCCEEET
T ss_pred             HHHHHHHHHHHhcCCCCHHHhCCeEEEeCCCCccHHHceeeecCCCCEEEEEecC-HhHHHHHHHHHHHcCCCCCcccCC
Confidence            3689999999999999999999999999999999999999999999999999999 999999999999999999999999


Q ss_pred             CEEEEcCCC
Q psy9114          90 TTIIIPIPK   98 (98)
Q Consensus        90 ~~Iri~iP~   98 (98)
                      +.|||+||+
T Consensus        96 ~~Iri~iP~  104 (185)
T 1is1_A           96 TIIRVPLPP  104 (185)
T ss_dssp             TEEEEECCC
T ss_pred             CEEEEeCCC
Confidence            999999996

>1wqg_A Ribosome recycling factor; translation factor, triple-helix bundle, protein synthesis, translation; 2.15A {Mycobacterium tuberculosis} SCOP: d.67.3.1 PDB: 1wqf_A 1wqh_A

Probab=100.00  E-value=3.8e-36  Score=220.44  Aligned_cols=88  Identities=15%  Similarity=0.289  Sum_probs=86.2

Q ss_pred             ccccccccccccccccCcCCCceeEEEEcCCcccccceeeeeecCCcEEEEEeccCCCchHHHHHHHHhCCCCCCccCCC
Q psy9114          10 QRHSPQPILVNTPLFCIPGAIESLKVEFEDDEYVLQDLAQISRKNPKTLIINMSSFPQLIPVTMKALVDSGMNMNPQQEG   89 (98)
Q Consensus        10 ~~~~~~~~~k~~tgRa~p~~ld~I~V~~yg~~~pL~~lAqIsv~~~~~l~I~~~D~~~~ik~I~kAI~~S~LglnP~~dg   89 (98)
                      -++|+++|+++|||||||++||+|+|+|||+++||+|||+|+++++|+|+|+||| ++++++|+|||++|+|||||++||
T Consensus        17 i~~lk~~l~~iRtGRa~p~lld~I~V~yyG~~~pL~qvA~Isv~~~r~l~I~p~D-~~~i~~IekAI~~SdLglnP~~dG   95 (185)
T 1wqg_A           17 VAVARDDLSTIRTGRANPGMFSRITIDYYGAATPITQLASINVPEARLVVIKPYE-ANQLRAIETAIRNSDLGVNPTNDG   95 (185)
T ss_dssp             HHHHHHHHHTSCCSSCCGGGGTTCEEEETTEEEEGGGSEEEEEEETTEEEEEESS-GGGHHHHHHHHHHSTTCCCCEECS
T ss_pred             HHHHHHHHHHHhcCCCCHHHhCCeEEEeCCCcccHHHceeeecCCCCEEEEEeCC-HhHHHHHHHHHHHcCCCCCcccCC
Confidence            3689999999999999999999999999999999999999999999999999999 999999999999999999999999


Q ss_pred             CEEEEcCCC
Q psy9114          90 TTIIIPIPK   98 (98)
Q Consensus        90 ~~Iri~iP~   98 (98)
                      +.|||+||+
T Consensus        96 ~~Iri~iP~  104 (185)
T 1wqg_A           96 ALIRVAVPQ  104 (185)
T ss_dssp             SCEEEECCC
T ss_pred             CEEEEeCCC
Confidence            999999996

>1eh1_A Ribosome recycling factor; translation, hinge variability; 2.60A {Thermus thermophilus} SCOP: d.67.3.1 PDB: 2qbe_6 2qbg_6 2qbi_6* 2qbk_6* 2v46_Y* 2v48_Y* 2z4l_6* 2z4n_6* 3j0d_J 3j0e_G

Probab=100.00  E-value=3.9e-36  Score=220.42  Aligned_cols=88  Identities=23%  Similarity=0.348  Sum_probs=86.2

Q ss_pred             ccccccccccccccccCcCCCceeEEEEcCCcccccceeeeeecCCcEEEEEeccCCCchHHHHHHHHhCCCCCCccCCC
Q psy9114          10 QRHSPQPILVNTPLFCIPGAIESLKVEFEDDEYVLQDLAQISRKNPKTLIINMSSFPQLIPVTMKALVDSGMNMNPQQEG   89 (98)
Q Consensus        10 ~~~~~~~~~k~~tgRa~p~~ld~I~V~~yg~~~pL~~lAqIsv~~~~~l~I~~~D~~~~ik~I~kAI~~S~LglnP~~dg   89 (98)
                      -++|+++|+++|||||||++||+|+|+|||+++||+|||+|+++++|+|+|+||| ++++++|+|||++|+|||||++||
T Consensus        18 ie~lk~~l~~iRtGRa~p~lld~I~V~yyG~~~pL~qvA~Isv~~~r~l~I~p~D-~~~i~~IekAI~~SdLglnP~~dG   96 (185)
T 1eh1_A           18 LEVLEHNLAGLRTGRANPALLLHLKVEYYGAHVPLNQIATVTAPDPRTLVVQSWD-QNALKAIEKAIRDSDLGLNPSNKG   96 (185)
T ss_dssp             HHHHHHHHHTSCCSSCCSGGGTSCEEEETTEEEEGGGTCEEECSSTTEEEEECSS-HHHHHHHHHHHSSSTTCCCEEEET
T ss_pred             HHHHHHHHHHHhcCCCCHHHhCCeEEEeCCCCccHHHceeeecCCCCEEEEecCC-HhHHHHHHHHHHHcCCCCCcccCC
Confidence            3689999999999999999999999999999999999999999999999999999 999999999999999999999999


Q ss_pred             CEEEEcCCC
Q psy9114          90 TTIIIPIPK   98 (98)
Q Consensus        90 ~~Iri~iP~   98 (98)
                      +.|||+||+
T Consensus        97 ~~Iri~iP~  105 (185)
T 1eh1_A           97 DALYINIPP  105 (185)
T ss_dssp             TEEEEECCC
T ss_pred             CEEEEeCCC
Confidence            999999996

>4gfq_A Ribosome-recycling factor; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.65A {Bacillus anthracis}

Probab=100.00  E-value=5.2e-36  Score=223.29  Aligned_cols=88  Identities=18%  Similarity=0.278  Sum_probs=86.2

Q ss_pred             ccccccccccccccccCcCCCceeEEEEcCCcccccceeeeeecCCcEEEEEeccCCCchHHHHHHHHhCCCCCCccCCC
Q psy9114          10 QRHSPQPILVNTPLFCIPGAIESLKVEFEDDEYVLQDLAQISRKNPKTLIINMSSFPQLIPVTMKALVDSGMNMNPQQEG   89 (98)
Q Consensus        10 ~~~~~~~~~k~~tgRa~p~~ld~I~V~~yg~~~pL~~lAqIsv~~~~~l~I~~~D~~~~ik~I~kAI~~S~LglnP~~dg   89 (98)
                      .++|+.+|+++|||||||++||+|+|+|||+++||+|||+|+++++|+|+|+||| ++++++|+|||++|+|||||++||
T Consensus        41 ie~lk~el~~iRtGRA~p~lLd~I~VdyYG~~tPL~qvA~Isvpe~rtl~I~p~D-~s~i~~IekAI~~S~LglnP~~dG  119 (209)
T 4gfq_A           41 VAAYSRELATVRAGRASASVLDKVQVDYYGAPTPVVQLANITVPEARLLVIQPYD-KTSIGDIEKAILKADLGLNPSNDG  119 (209)
T ss_dssp             HHHHHHHHHTCCSBSCCGGGGTTCEEESSSCEEEGGGGEEEEEEETTEEEEEESS-GGGHHHHHHHHHHHTSSCCCEECS
T ss_pred             HHHHHHHHHhhhcCCCCHHHhCCeEEeeCCCccchhhhheeecCCCCEEEEecCc-HhhHHHHHHHHHHcCCCCCCCcCC
Confidence            3689999999999999999999999999999999999999999999999999999 999999999999999999999999


Q ss_pred             CEEEEcCCC
Q psy9114          90 TTIIIPIPK   98 (98)
Q Consensus        90 ~~Iri~iP~   98 (98)
                      +.|||+||+
T Consensus       120 ~~Iri~iP~  128 (209)
T 4gfq_A          120 TVIRIAFPA  128 (209)
T ss_dssp             SCEEEECCB
T ss_pred             CceeeeCCC
Confidence            999999995

>1wih_A Mitochondrial ribosome recycling factor; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.67.3.1

Probab=100.00  E-value=1.8e-35  Score=193.80  Aligned_cols=76  Identities=38%  Similarity=0.650  Sum_probs=74.9

Q ss_pred             cccCcCCCceeEEEEcCCcccccceeeeeecCCcEEEEEeccCCCchHHHHHHHHhCCCCCCccCCCCEEEEcCCC
Q psy9114          23 LFCIPGAIESLKVEFEDDEYVLQDLAQISRKNPKTLIINMSSFPQLIPVTMKALVDSGMNMNPQQEGTTIIIPIPK   98 (98)
Q Consensus        23 gRa~p~~ld~I~V~~yg~~~pL~~lAqIsv~~~~~l~I~~~D~~~~ik~I~kAI~~S~LglnP~~dg~~Iri~iP~   98 (98)
                      |||||++||+|+|+|||+++||+|+|+|+++++|+|+|+||||++++++|+|||++|+||+||++||+.|||+||+
T Consensus         1 GRa~p~lld~I~V~yyG~~~pL~qvA~isv~~~r~l~I~p~D~~~~~~~IekAI~~S~LglnP~~dG~~Iri~iP~   76 (84)
T 1wih_A            1 GSSGSSGLDHITVVTADGKVALNQIGQISMKSPQVILVNMASFPECTAAAIKAIRESGMNLNPEVEGTLIRVPIPK   76 (84)
T ss_dssp             CCSSSCTTSSCEEEETTEEEEHHHHSEEEEEETTEEEEECTTCTTSHHHHHHHHHTTTCCCCCEEETTEEEEECCC
T ss_pred             CCCChHHhCCEEEEECCCCccHHHceEEEcCCCCEEEEEecccHHHHHHHHHHHHHCCCCCCcccCCCEEEEeCCC
Confidence            8999999999999999999999999999999999999999998899999999999999999999999999999996

>1ge9_A Ribosome recycling factor; three-helix bundle; NMR {Aquifex aeolicus} SCOP: d.67.3.1

Probab=100.00  E-value=3.7e-35  Score=215.07  Aligned_cols=87  Identities=21%  Similarity=0.333  Sum_probs=85.2

Q ss_pred             ccccccccccccccccCcCCCceeEEEEcCCcccccceeeeeecCCcEEEEEeccCCCchHHHHHHHHhCCCCCCccCCC
Q psy9114          10 QRHSPQPILVNTPLFCIPGAIESLKVEFEDDEYVLQDLAQISRKNPKTLIINMSSFPQLIPVTMKALVDSGMNMNPQQEG   89 (98)
Q Consensus        10 ~~~~~~~~~k~~tgRa~p~~ld~I~V~~yg~~~pL~~lAqIsv~~~~~l~I~~~D~~~~ik~I~kAI~~S~LglnP~~dg   89 (98)
                      -++|+++|+++|||||||++||+|+|+|||+++||+|||+|+++++|+|+|+||| ++++++|+|||++ +|||||++||
T Consensus        20 ie~lk~~l~~iRtGRa~p~lld~I~V~yyG~~tpL~qvA~Isv~~~r~l~I~p~D-~~~i~~IekAI~~-dLglnP~~dG   97 (184)
T 1ge9_A           20 VEYYKNEIAGLRTSRASTALVEEIKVEYYGSKVPIKQLGTISVPEHNQIVIQVWD-QNAVPAIEKAIRE-ELNLNPTVQG   97 (184)
T ss_dssp             HHHHHHHHHHSCCSSCCTTTCSCCCEESSSCEECTTTTCEEECSSSSEEEEECSS-SSHHHHHHHHHHH-HHCSCCEEET
T ss_pred             HHHHHHHHHHHhcCCCCHHHhCCeEEEECCCCccHHHceeeecCCCCEEEEEecC-HHHHHHHHHHHHh-CCCCCcccCC
Confidence            3689999999999999999999999999999999999999999999999999999 9999999999999 9999999999


Q ss_pred             CEEEEcCCC
Q psy9114          90 TTIIIPIPK   98 (98)
Q Consensus        90 ~~Iri~iP~   98 (98)
                      +.|||+||+
T Consensus        98 ~~Iri~iP~  106 (184)
T 1ge9_A           98 NVIRVTLPP  106 (184)
T ss_dssp             TEEEEECCC
T ss_pred             CEEEEeCCC
Confidence            999999996

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	98
d1wiha_	84	d.67.3.1 (A:) Ribosome recycling factor, RRF {Mous	4e-15

>d1wiha_ d.67.3.1 (A:) Ribosome recycling factor, RRF {Mouse (Mus musculus), mitochondrial [TaxId: 10090]} Length = 84

class: Alpha and beta proteins (a+b)
fold: RRF/tRNA synthetase additional domain-like
superfamily: Ribosome recycling factor, RRF
family: Ribosome recycling factor, RRF
domain: Ribosome recycling factor, RRF
species: Mouse (Mus musculus), mitochondrial [TaxId: 10090]

 Score = 62.5 bits (152), Expect = 4e-15
 Identities = 29/72 (40%), Positives = 47/72 (65%)

Query: 27 PGAIESLKVEFEDDEYVLQDLAQISRKNPKTLIINMSSFPQLIPVTMKALVDSGMNMNPQ 86
             ++ + V   D +  L  + QIS K+P+ +++NM+SFP+     +KA+ +SGMN+NP+
Sbjct: 5  SSGLDHITVVTADGKVALNQIGQISMKSPQVILVNMASFPECTAAAIKAIRESGMNLNPE 64

Query: 87 QEGTTIIIPIPK 98
           EGT I +PIPK
Sbjct: 65 VEGTLIRVPIPK 76

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	98
d1wiha_	84	Ribosome recycling factor, RRF {Mouse (Mus musculu	100.0
d1is1a_	185	Ribosome recycling factor, RRF {Vibrio parahaemoly	100.0
d1wqga1	183	Ribosome recycling factor, RRF {Mycobacterium tube	100.0
d1dd5a_	184	Ribosome recycling factor, RRF {Thermotoga maritim	100.0
d1ek8a_	185	Ribosome recycling factor, RRF {Escherichia coli [	99.98
d1eh1a_	185	Ribosome recycling factor, RRF {Thermus thermophil	99.97
d1ge9a_	184	Ribosome recycling factor, RRF {Aquifex aeolicus [	99.97

>d1wiha_ d.67.3.1 (A:) Ribosome recycling factor, RRF {Mouse (Mus musculus), mitochondrial [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: RRF/tRNA synthetase additional domain-like
superfamily: Ribosome recycling factor, RRF
family: Ribosome recycling factor, RRF
domain: Ribosome recycling factor, RRF
species: Mouse (Mus musculus), mitochondrial [TaxId: 10090]

Probab=100.00  E-value=1.3e-34  Score=187.95  Aligned_cols=76  Identities=38%  Similarity=0.650  Sum_probs=75.0

Q ss_pred             cccCcCCCceeEEEEcCCcccccceeeeeecCCcEEEEEeccCCCchHHHHHHHHhCCCCCCccCCCCEEEEcCCC
Q psy9114          23 LFCIPGAIESLKVEFEDDEYVLQDLAQISRKNPKTLIINMSSFPQLIPVTMKALVDSGMNMNPQQEGTTIIIPIPK   98 (98)
Q Consensus        23 gRa~p~~ld~I~V~~yg~~~pL~~lAqIsv~~~~~l~I~~~D~~~~ik~I~kAI~~S~LglnP~~dg~~Iri~iP~   98 (98)
                      |||||++||+|+|+|||+++||+|||+|+++++|+|+|+||||++++++|+|||++|||||||+.||+.|||+||+
T Consensus         1 Gra~p~lld~I~V~~yg~~~pL~qlA~Isv~~~~~l~I~~~D~~~~~~~i~kAI~~S~LglnP~~dG~~Iri~iP~   76 (84)
T d1wiha_           1 GSSGSSGLDHITVVTADGKVALNQIGQISMKSPQVILVNMASFPECTAAAIKAIRESGMNLNPEVEGTLIRVPIPK   76 (84)
T ss_dssp             CCSSSCTTSSCEEEETTEEEEHHHHSEEEEEETTEEEEECTTCTTSHHHHHHHHHTTTCCCCCEEETTEEEEECCC
T ss_pred             CCCChHHcCceEEEECCCcccHHHHhhhhcCCCceEEEEEeecccccHHHHHHHHhcCCCCCcccCCCEEEEECCC
Confidence            8999999999999999999999999999999999999999999999999999999999999999999999999996

>d1is1a_ d.67.3.1 (A:) Ribosome recycling factor, RRF {Vibrio parahaemolyticus [TaxId: 670]}

class: Alpha and beta proteins (a+b)
fold: RRF/tRNA synthetase additional domain-like
superfamily: Ribosome recycling factor, RRF
family: Ribosome recycling factor, RRF
domain: Ribosome recycling factor, RRF
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=100.00  E-value=2.1e-34  Score=208.75  Aligned_cols=88  Identities=22%  Similarity=0.328  Sum_probs=86.2

Q ss_pred             ccccccccccccccccCcCCCceeEEEEcCCcccccceeeeeecCCcEEEEEeccCCCchHHHHHHHHhCCCCCCccCCC
Q psy9114          10 QRHSPQPILVNTPLFCIPGAIESLKVEFEDDEYVLQDLAQISRKNPKTLIINMSSFPQLIPVTMKALVDSGMNMNPQQEG   89 (98)
Q Consensus        10 ~~~~~~~~~k~~tgRa~p~~ld~I~V~~yg~~~pL~~lAqIsv~~~~~l~I~~~D~~~~ik~I~kAI~~S~LglnP~~dg   89 (98)
                      -+||+++|+++||||+||++||+|+|+|||+++||++||+|+++++++|+|+||| ++++++|++||++||||+||+.||
T Consensus        17 i~~l~~el~~irtGRa~p~lld~I~V~~yg~~~pL~~lA~Is~~~~~~l~I~p~D-~~~v~~IekAI~~s~lglnp~~dg   95 (185)
T d1is1a_          17 VEALKNNLSKVRTGRAHPSLLSGISVEYYGAATPLNQVANVVAEDARTLAITVFD-KELTQKVEKAIMMSDLGLNPMSAG   95 (185)
T ss_dssp             HHHHHHHHTTSCCSSCCGGGGTTCEEEETTEEEEGGGTEEEEEEETTEEEEEESS-TTTHHHHHHHHHHTTSSCCCEEET
T ss_pred             HHHHHHHHHHhhcCCCCHHHhCCeEEEECCCCccHHHHhhhccCCCceEEEEecc-cchHHHHHHHHHhcccccccccCC
Confidence            3789999999999999999999999999999999999999999999999999999 999999999999999999999999


Q ss_pred             CEEEEcCCC
Q psy9114          90 TTIIIPIPK   98 (98)
Q Consensus        90 ~~Iri~iP~   98 (98)
                      +.|||+||+
T Consensus        96 ~~Iri~iP~  104 (185)
T d1is1a_          96 TIIRVPLPP  104 (185)
T ss_dssp             TEEEEECCC
T ss_pred             ceeeecCCC
Confidence            999999996

>d1wqga1 d.67.3.1 (A:2-184) Ribosome recycling factor, RRF {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: RRF/tRNA synthetase additional domain-like
superfamily: Ribosome recycling factor, RRF
family: Ribosome recycling factor, RRF
domain: Ribosome recycling factor, RRF
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=100.00  E-value=3.1e-34  Score=207.49  Aligned_cols=88  Identities=15%  Similarity=0.289  Sum_probs=86.2

Q ss_pred             ccccccccccccccccCcCCCceeEEEEcCCcccccceeeeeecCCcEEEEEeccCCCchHHHHHHHHhCCCCCCccCCC
Q psy9114          10 QRHSPQPILVNTPLFCIPGAIESLKVEFEDDEYVLQDLAQISRKNPKTLIINMSSFPQLIPVTMKALVDSGMNMNPQQEG   89 (98)
Q Consensus        10 ~~~~~~~~~k~~tgRa~p~~ld~I~V~~yg~~~pL~~lAqIsv~~~~~l~I~~~D~~~~ik~I~kAI~~S~LglnP~~dg   89 (98)
                      -+||+++|+++||||+||++||+|+|+|||+++||++||+|+++++++|+|+||| ++++++|++||++||||+||+.||
T Consensus        16 i~~l~~el~~irtGRasp~lld~I~V~~yg~~~pL~~lA~Is~~~~~~l~I~p~D-~~~v~~IekAI~~s~lglnP~~dg   94 (183)
T d1wqga1          16 VAVARDDLSTIRTGRANPGMFSRITIDYYGAATPITQLASINVPEARLVVIKPYE-ANQLRAIETAIRNSDLGVNPTNDG   94 (183)
T ss_dssp             HHHHHHHHHTSCCSSCCGGGGTTCEEEETTEEEEGGGSEEEEEEETTEEEEEESS-GGGHHHHHHHHHHSTTCCCCEECS
T ss_pred             HHHHHHHHHHHhcCCCCHHHcCCeEEeeCCCcccHHHHHhhhccCcceEEEeecc-hhhHHHHHHHHHHcCCCCCCCcCC
Confidence            4789999999999999999999999999999999999999999999999999999 999999999999999999999999


Q ss_pred             CEEEEcCCC
Q psy9114          90 TTIIIPIPK   98 (98)
Q Consensus        90 ~~Iri~iP~   98 (98)
                      +.|||+||+
T Consensus        95 ~~Irv~iP~  103 (183)
T d1wqga1          95 ALIRVAVPQ  103 (183)
T ss_dssp             SCEEEECCC
T ss_pred             ceeeeeccc
Confidence            999999996

>d1dd5a_ d.67.3.1 (A:) Ribosome recycling factor, RRF {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: RRF/tRNA synthetase additional domain-like
superfamily: Ribosome recycling factor, RRF
family: Ribosome recycling factor, RRF
domain: Ribosome recycling factor, RRF
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=6.6e-34  Score=205.93  Aligned_cols=88  Identities=22%  Similarity=0.298  Sum_probs=86.3

Q ss_pred             ccccccccccccccccCcCCCceeEEEEcCCcccccceeeeeecCCcEEEEEeccCCCchHHHHHHHHhCCCCCCccCCC
Q psy9114          10 QRHSPQPILVNTPLFCIPGAIESLKVEFEDDEYVLQDLAQISRKNPKTLIINMSSFPQLIPVTMKALVDSGMNMNPQQEG   89 (98)
Q Consensus        10 ~~~~~~~~~k~~tgRa~p~~ld~I~V~~yg~~~pL~~lAqIsv~~~~~l~I~~~D~~~~ik~I~kAI~~S~LglnP~~dg   89 (98)
                      -+||+++|+++||||+||++||+|+|+|||+++||++||+|+++++++|+|+||| ++++++|++||++|+||+||+.||
T Consensus        16 i~~l~~el~~irtGra~p~lld~I~V~~yg~~~pL~~lA~Is~~~~~~l~I~p~D-~~~v~~I~kAI~~s~lglnp~~dg   94 (184)
T d1dd5a_          16 LEKIEDELRKMRTGKPSPAILEEIKVDYYGVPTPVNQLATISISEERTLVIKPWD-KSVLSLIEKAINASDLGLNPINDG   94 (184)
T ss_dssp             HHHHHHHHHHSCCSSCCGGGGTTCEEEETTEEEEGGGSEEEEECSTTEEEEEESS-TTHHHHHHHHHHHSSSCCCCEECS
T ss_pred             HHHHHHHHHHHhcCCCCHHHHCceEEeeCCCcccHHHHhhhccCCcceeEeeccc-hhhHHHHHHHHHhcccCCCCccCc
Confidence            4789999999999999999999999999999999999999999999999999999 999999999999999999999999


Q ss_pred             CEEEEcCCC
Q psy9114          90 TTIIIPIPK   98 (98)
Q Consensus        90 ~~Iri~iP~   98 (98)
                      +.|||+||+
T Consensus        95 ~~Iri~iP~  103 (184)
T d1dd5a_          95 NVIRLVFPS  103 (184)
T ss_dssp             SCEEEECCC
T ss_pred             ccceeeccc
Confidence            999999996

>d1ek8a_ d.67.3.1 (A:) Ribosome recycling factor, RRF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: RRF/tRNA synthetase additional domain-like
superfamily: Ribosome recycling factor, RRF
family: Ribosome recycling factor, RRF
domain: Ribosome recycling factor, RRF
species: Escherichia coli [TaxId: 562]

Probab=99.98  E-value=6.9e-34  Score=205.95  Aligned_cols=88  Identities=24%  Similarity=0.388  Sum_probs=86.2

Q ss_pred             ccccccccccccccccCcCCCceeEEEEcCCcccccceeeeeecCCcEEEEEeccCCCchHHHHHHHHhCCCCCCccCCC
Q psy9114          10 QRHSPQPILVNTPLFCIPGAIESLKVEFEDDEYVLQDLAQISRKNPKTLIINMSSFPQLIPVTMKALVDSGMNMNPQQEG   89 (98)
Q Consensus        10 ~~~~~~~~~k~~tgRa~p~~ld~I~V~~yg~~~pL~~lAqIsv~~~~~l~I~~~D~~~~ik~I~kAI~~S~LglnP~~dg   89 (98)
                      -+||+++|+++||||+||++||+|+|+|||+++||++||+|+++++++|+|+||| ++.+++|++||++||||+||+.||
T Consensus        17 ie~l~~el~~irtGRa~p~lld~I~V~~yg~~~pL~~lA~Is~~~~~~l~I~p~D-~~~v~~IekAI~~s~lgl~p~~dg   95 (185)
T d1ek8a_          17 VEAFKTQISKIRTGRASPSLLDGIVVEYYGTPTPLRQLASVTVEDSRTLKINVFD-RSMSPAVEKAIMASDLGLNPNSAG   95 (185)
T ss_dssp             HHHHHHHHHTCCCSSCCTTTTTTCEEEETTEEEEGGGTEEEEEEETTEEEEEESS-GGGHHHHHHHHHHTCSSCCCEEET
T ss_pred             HHHHHHHHHHHhcCCCCHHHhCeeEEeeCCCcccHHHHhhhccCcchheeeeech-HhhHHHHHHHHHhccCCCCCCccc
Confidence            3789999999999999999999999999999999999999999999999999999 999999999999999999999999


Q ss_pred             CEEEEcCCC
Q psy9114          90 TTIIIPIPK   98 (98)
Q Consensus        90 ~~Iri~iP~   98 (98)
                      +.|||+||+
T Consensus        96 ~~Iri~iP~  104 (185)
T d1ek8a_          96 SDIRVPLPP  104 (185)
T ss_dssp             TEEEEECCC
T ss_pred             cceecccCC
Confidence            999999996

>d1eh1a_ d.67.3.1 (A:) Ribosome recycling factor, RRF {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: RRF/tRNA synthetase additional domain-like
superfamily: Ribosome recycling factor, RRF
family: Ribosome recycling factor, RRF
domain: Ribosome recycling factor, RRF
species: Thermus thermophilus [TaxId: 274]

Probab=99.97  E-value=1.4e-33  Score=204.28  Aligned_cols=88  Identities=23%  Similarity=0.348  Sum_probs=86.1

Q ss_pred             ccccccccccccccccCcCCCceeEEEEcCCcccccceeeeeecCCcEEEEEeccCCCchHHHHHHHHhCCCCCCccCCC
Q psy9114          10 QRHSPQPILVNTPLFCIPGAIESLKVEFEDDEYVLQDLAQISRKNPKTLIINMSSFPQLIPVTMKALVDSGMNMNPQQEG   89 (98)
Q Consensus        10 ~~~~~~~~~k~~tgRa~p~~ld~I~V~~yg~~~pL~~lAqIsv~~~~~l~I~~~D~~~~ik~I~kAI~~S~LglnP~~dg   89 (98)
                      -+||+++|+++|+||+||++||+|+|+|||+++||++||+|+++++++|+|+||| ++++++|++||++||||+||+.||
T Consensus        18 i~~l~~~l~~irtGra~p~lld~i~V~~~g~~~pL~~lA~Isv~~~~~l~I~~~D-~~~v~~I~kAI~~s~l~l~p~~dg   96 (185)
T d1eh1a_          18 LEVLEHNLAGLRTGRANPALLLHLKVEYYGAHVPLNQIATVTAPDPRTLVVQSWD-QNALKAIEKAIRDSDLGLNPSNKG   96 (185)
T ss_dssp             HHHHHHHHHTSCCSSCCSGGGTSCEEEETTEEEEGGGTCEEECSSTTEEEEECSS-HHHHHHHHHHHSSSTTCCCEEEET
T ss_pred             HHHHHHHHHHhhcCCCCHHHcCCeEEeeCCCcccHHHHhhhccCCcceEEeeccc-hHHHHHHHHHHHhcCcccccccCc
Confidence            3689999999999999999999999999999999999999999999999999999 999999999999999999999999


Q ss_pred             CEEEEcCCC
Q psy9114          90 TTIIIPIPK   98 (98)
Q Consensus        90 ~~Iri~iP~   98 (98)
                      +.|||+||+
T Consensus        97 ~~Irv~iP~  105 (185)
T d1eh1a_          97 DALYINIPP  105 (185)
T ss_dssp             TEEEEECCC
T ss_pred             cceeccCCC
Confidence            999999996

>d1ge9a_ d.67.3.1 (A:) Ribosome recycling factor, RRF {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a+b)
fold: RRF/tRNA synthetase additional domain-like
superfamily: Ribosome recycling factor, RRF
family: Ribosome recycling factor, RRF
domain: Ribosome recycling factor, RRF
species: Aquifex aeolicus [TaxId: 63363]

Probab=99.97  E-value=1.7e-32  Score=198.41  Aligned_cols=87  Identities=21%  Similarity=0.330  Sum_probs=84.4

Q ss_pred             ccccccccccccccccCcCCCceeEEEEcCCcccccceeeeeecCCcEEEEEeccCCCchHHHHHHHHhCCCCCCccCCC
Q psy9114          10 QRHSPQPILVNTPLFCIPGAIESLKVEFEDDEYVLQDLAQISRKNPKTLIINMSSFPQLIPVTMKALVDSGMNMNPQQEG   89 (98)
Q Consensus        10 ~~~~~~~~~k~~tgRa~p~~ld~I~V~~yg~~~pL~~lAqIsv~~~~~l~I~~~D~~~~ik~I~kAI~~S~LglnP~~dg   89 (98)
                      -+||+++|+++|+||+||++||+|+|+|||+++||++||+|+++++++|+|+||| ++.+++|++|| .|+||+||+.||
T Consensus        20 i~~l~~el~~irtGRasp~lld~i~V~~yg~~~pL~~lA~Is~~~~~~l~i~~~D-~~~v~~IekAI-~s~lglnp~~~g   97 (184)
T d1ge9a_          20 VEYYKNEIAGLRTSRASTALVEEIKVEYYGSKVPIKQLGTISVPEHNQIVIQVWD-QNAVPAIEKAI-REELNLNPTVQG   97 (184)
T ss_dssp             HHHHHHHHHHSCCSSCCTTTCSCCCEESSSCEECTTTTCEEECSSSSEEEEECSS-SSHHHHHHHHH-HHHHCSCCEEET
T ss_pred             HHHHHHHHHHHhcCCCCHHHcCCeEEeeCCCcccHHHHHHhhcCCcceeeeeccc-HHHHHHHHHHH-hccCCCCCCCCC
Confidence            4789999999999999999999999999999999999999999999999999999 99999999999 569999999999


Q ss_pred             CEEEEcCCC
Q psy9114          90 TTIIIPIPK   98 (98)
Q Consensus        90 ~~Iri~iP~   98 (98)
                      +.|||+||+
T Consensus        98 ~~Iri~iP~  106 (184)
T d1ge9a_          98 NVIRVTLPP  106 (184)
T ss_dssp             TEEEEECCC
T ss_pred             cceeccCCc
Confidence            999999996