Psyllid ID: psy9120

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260---
Protein Sequence
CKQSKVYLPEEPFPHAHLVKTGRLKHFKSIHDDAFNAEFRQPCIVFCGHPSLRFGDSVHFVQLWGSNPLHTIIFTEPDFPYVEALAPFQPLAMKSIHCPIDTSLNFNQANKLIRELKPSTLWSRRYLPRWCSGQGATYLGGVVVKALPPRPMDQQALKNANVLLLSGLTQTPTSNPDAMLGELCMTVVGTLRANGKVDRKVLTLKRGEVLKIPLKRKRTRVNMSAEIAEAVEPCELRPGLAIASIKGNLKVKDNQYCIDMTGR
Secondary Structure (PSIPRED)
ccccccccccccccHHHHHHcccEEEEEccccHHHHHHHcccEEEEEcccccccccHHHHHHHHccccccEEEEEccccccccccccccccccEEEEEcccccccHHHHHHHHHHHcccEEEccccccccccccccccccccEEEccccccccccccccccEEEEccccccccccccccccccEEEEEEEccccccccccEEEEEcccEEEcccccccccccccHHHHHccccccccccEEEEEEEEEEEEEccEEEEEcccc
Secondary Structure Prediction (SSPRO)
ccccEEccccccccHHHHHHcccEEEEccccccHHHHHccccEEEEEccccccccHHHHHHHHHccccccEEEEEcccccHHHHHcccccccEEEEEEcccccccHHHHHHHHHHHccccEEcccccccccccccEEEEccccccccccccccHHHcccccEEEEccccccccccccccHHHHEEccHHEEccccccccccEEEEcccEEEccccEEEEEEEEcHHHHHHcccccccccEEEEEEEEEEEEEccEEEEEEccc
Coil and Loop (DISEMBL)
ckqskvylpeepfphahlvktgrlkhFKSIHDdafnaefrqpcivfcghpslrfgdsvhfvqlwgsnplhtiiftepdfpyvealapfqplamksihcpidtslnfNQANKLIRElkpstlwsrrylprwcsgqgatylggvvvkalpprpmdqQALKNANVLLLSgltqtptsnpdamlGELCMTVVGTLrangkvdrkvltlkrgevlkiplkrkrtrVNMSAEIAEavepcelrpglaiasikgnlkvkdnqycidmtgr
Flexible Loop (DISEMBL)
ckqskvylpeepfphahlvkTGRLKHFKSIHDDAFNAEFRQPCIVFCGHPSLRFGDSVHFVQLWGSNPLHTIIFTEPDFPYVEALAPFQPLAMKSIHCPIDTSLNFNQANKLIRELKPSTLWSRRYLPRWCSGQGATYLGGVVVKALPPRPMDQQALKNANVLLLSGLTQTPTSNPDAMLGELCMTVVGTlrangkvdrkvltlkrgevlkiplkrkrtrvnMSAEiaeavepcelrpglaiasikgnlkvkdnqycidmtgr
Low Complexity Region (SEG)
CKQSKVYLPEEPFPHAHLVKTGRLKHFKSIHDDAFNAEFRQPCIVFCGHPSLRFGDSVHFVQLWGSNPLHTIIFTEPDFPYVEALAPFQPLAMKSIHCPIDTSLNFNQANKLIRELKPSTLWSRRYLPRWCSGQGATYLGGVVVKALPPRPMDQQALKNANVLLLSGLTQTPTSNPDAMLGELCMTVVGTLRANGKVDRKVLTLKRGEVLKIPLKRKRTRVNMSAEIAEAVEPCELRPGLAIASIKGNLKVKDNQYCIDMTGR
Disordered region (IsUnstruct)
************FPHAHLVKTGRLKHFKSIHDDAFNAEFRQPCIVFCGHPSLRFGDSVHFVQLWGSNPLHTIIFTEPDFPYVEALAPFQPLAMKSIHCPIDTSLNFNQANKLIRELKPSTLWSRRYLPRWCSGQGATYLGGVVVKALPP******ALKNANVLLLSGLTQ******DAMLGELCMTVVGTLRANGKVDRKVLTLKRGEVLKIPLKRKRTRVNMSAEIAEAVEPCELRPGLAIASIKGNLKVKDNQYCI*****
Disordered Region (DISOPRED)
****KVYLPEEPFPHAHLVKTGRLKHFKSIHDDAFNAEFRQPCIVFCGHPSLRFGDSVHFVQLWGSNPLHTIIFTEPDFPYVEALAPFQPLAMKSIHCPIDTSLNFNQANKLIRELKPSTLWSRRYL****************VKALPPRPMDQQALKNANVLLLSGLTQTPTSNPDAMLGELCMTVVGTLRANGKVDRKVLTLKRGEVLKIPLKRKRTRVNMSAEIAEAVEPCELRPGLAIASIKGNLKVKDNQYCIDMT**
Disordered Region (DISEMBL)
CKQSKVYLPEEPFPHAHLVKTGRLKHFKSIHDDAFNAEFRQPCIVFCGHPSLRFGDSVHFVQLWGSNPLHTIIFTEPDFPYVEALAPFQPLAMKSIHCPIDTSLNFNQANKLIRELKPSTLWSRRYLPRWCSGQGATYLGGVVVKALPPRPMDQQALKNANVLLLSGLTQTPTSNPDAMLGELCMTVVGTLRANGKVDRKVLTLKRGEVLKIPLKRKRTRVNMSAEIAEAVEPCELRPGLAIASIKGNLKVKDNQYCIDMTGR
Disordered Region (DISPRO)
CKQSKVYLPEEPFPHAHLVKTGRLKHFKSIHDDAFNAEFRQPCIVFCGHPSLRFGDSVHFVQLWGSNPLHTIIFTEPDFPYVEALAPFQPLAMKSIHCPIDTSLNFNQANKLIRELKPSTLWSRRYLPRWCSGQGATYLGGVVVKALPPRPMDQQALKNANVLLLSGLTQTPTSNPDAMLGELCMTVVGTLRANGKVDRKVLTLKRGEVLKIPLKRKRTRVNMSAEIAEAVEPCELRPGLAIASIKGNLKVKDNQYCIDMTG*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
CKQSKVYLPEEPFPHAHLVKTGRLKHFKSIHDDAFNAEFRQPCIVFCGHPSLRFGDSVHFVQLWGSNPLHTIIFTEPDFPYVEALAPFQPLAMKSIHCPIDTSLNFNQANKLIRELKPSTLWSRRYLPRWCSGQGATYLGGVVVKALPPRPMDQQALKNANVLLLSGLTQTPTSNPDAMLGELCMTVVGTLRANGKVDRKVLTLKRGEVLKIPLKRKRTRVNMSAEIAEAVEPCELRPGLAIASIKGNLKVKDNQYCIDMTGR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	263	2.2.26 [Sep-21-2011]
Q8K114	658	Integrator complex subuni	yes	N/A	0.441	0.176	0.692	5e-46
Q4R5Z4	637	Integrator complex subuni	N/A	N/A	0.441	0.182	0.692	8e-46
Q9NV88	658	Integrator complex subuni	yes	N/A	0.441	0.176	0.692	9e-46
Q2KJA6	658	Integrator complex subuni	yes	N/A	0.441	0.176	0.683	1e-45
A7SBF0	660	Integrator complex subuni	N/A	N/A	0.775	0.309	0.381	1e-44
Q5ZKK2	658	Integrator complex subuni	yes	N/A	0.441	0.176	0.649	2e-44
Q6DFF4	658	Integrator complex subuni	N/A	N/A	0.441	0.176	0.632	5e-43
Q54SH0	712	Integrator complex subuni	yes	N/A	0.585	0.216	0.329	2e-20

>sp|Q8K114|INT9_MOUSE Integrator complex subunit 9 OS=Mus musculus GN=Ints9 PE=2 SV=1

 Score =  184 bits (467), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 81/117 (69%), Positives = 102/117 (87%), Gaps = 1/117 (0%)

Query: 2   KQSKVYLPEEPFPHAHLVKTGRLKHFKSIHDDAFNAEFRQPCIVFCGHPSLRFGDSVHFV 61
           KQSKVYLPE PFPHA L++T +LKH++SIH D F+ +FRQPC++F GHPSLRFGD VHF+
Sbjct: 351 KQSKVYLPEPPFPHAELIQTNKLKHYRSIHGD-FSNDFRQPCVLFTGHPSLRFGDVVHFM 409

Query: 62  QLWGSNPLHTIIFTEPDFPYVEALAPFQPLAMKSIHCPIDTSLNFNQANKLIRELKP 118
           +LWG + L+TIIFTEPDF Y+EALAP+QPLAMK I+CPIDT LNF Q +KL++E++P
Sbjct: 410 ELWGKSSLNTIIFTEPDFSYLEALAPYQPLAMKCIYCPIDTRLNFIQVSKLLKEVQP 466

Component of the Integrator complex, a complex involved in the small nuclear RNAs (snRNA) U1 and U2 transcription and in their 3'-box-dependent processing. The Integrator complex is associated with the C-terminal domain (CTD) of RNA polymerase II largest subunit (POLR2A) and is recruited to the U1 and U2 snRNAs genes.
Mus musculus (taxid: 10090)

>sp|Q4R5Z4|INT9_MACFA Integrator complex subunit 9 OS=Macaca fascicularis GN=INTS9 PE=2 SV=1

 Score =  184 bits (466), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 81/117 (69%), Positives = 101/117 (86%), Gaps = 1/117 (0%)

Query: 2   KQSKVYLPEEPFPHAHLVKTGRLKHFKSIHDDAFNAEFRQPCIVFCGHPSLRFGDSVHFV 61
           KQSKVYLPE PFPHA L++T +LKH+ SIH D F+ +FRQPC+VF GHPSLRFGD VHF+
Sbjct: 330 KQSKVYLPEPPFPHAELIQTNKLKHYPSIHGD-FSNDFRQPCVVFTGHPSLRFGDVVHFM 388

Query: 62  QLWGSNPLHTIIFTEPDFPYVEALAPFQPLAMKSIHCPIDTSLNFNQANKLIRELKP 118
           +LWG + L+T+IFTEPDF Y+EALAP+QPLAMK I+CPIDT LNF Q +KL++E++P
Sbjct: 389 ELWGKSSLNTVIFTEPDFSYLEALAPYQPLAMKCIYCPIDTRLNFIQVSKLLKEVQP 445

Component of the Integrator complex, a complex involved in the small nuclear RNAs (snRNA) U1 and U2 transcription and in their 3'-box-dependent processing. The Integrator complex is associated with the C-terminal domain (CTD) of RNA polymerase II largest subunit (POLR2A) and is recruited to the U1 and U2 snRNAs genes.

Macaca fascicularis (taxid: 9541)

>sp|Q9NV88|INT9_HUMAN Integrator complex subunit 9 OS=Homo sapiens GN=INTS9 PE=1 SV=2

 Score =  183 bits (465), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 81/117 (69%), Positives = 101/117 (86%), Gaps = 1/117 (0%)

Query: 2   KQSKVYLPEEPFPHAHLVKTGRLKHFKSIHDDAFNAEFRQPCIVFCGHPSLRFGDSVHFV 61
           KQSKVYLPE PFPHA L++T +LKH+ SIH D F+ +FRQPC+VF GHPSLRFGD VHF+
Sbjct: 351 KQSKVYLPEPPFPHAELIQTNKLKHYPSIHGD-FSNDFRQPCVVFTGHPSLRFGDVVHFM 409

Query: 62  QLWGSNPLHTIIFTEPDFPYVEALAPFQPLAMKSIHCPIDTSLNFNQANKLIRELKP 118
           +LWG + L+T+IFTEPDF Y+EALAP+QPLAMK I+CPIDT LNF Q +KL++E++P
Sbjct: 410 ELWGKSSLNTVIFTEPDFSYLEALAPYQPLAMKCIYCPIDTRLNFIQVSKLLKEVQP 466

Component of the Integrator complex, a complex involved in the small nuclear RNAs (snRNA) U1 and U2 transcription and in their 3'-box-dependent processing. The Integrator complex is associated with the C-terminal domain (CTD) of RNA polymerase II largest subunit (POLR2A) and is recruited to the U1 and U2 snRNAs genes.

Homo sapiens (taxid: 9606)

>sp|Q2KJA6|INT9_BOVIN Integrator complex subunit 9 OS=Bos taurus GN=INTS9 PE=2 SV=1

 Score =  182 bits (463), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 80/117 (68%), Positives = 101/117 (86%), Gaps = 1/117 (0%)

Query: 2   KQSKVYLPEEPFPHAHLVKTGRLKHFKSIHDDAFNAEFRQPCIVFCGHPSLRFGDSVHFV 61
           KQ+KVYLPE PFPHA L++T +LKH+ SIH D F+ +FRQPC+VF GHPSLRFGD VHF+
Sbjct: 351 KQTKVYLPEPPFPHAELIQTNKLKHYPSIHGD-FSNDFRQPCVVFTGHPSLRFGDVVHFM 409

Query: 62  QLWGSNPLHTIIFTEPDFPYVEALAPFQPLAMKSIHCPIDTSLNFNQANKLIRELKP 118
           +LWG + L+T+IFTEPDF Y+EALAP+QPLAMK I+CPIDT LNF Q +KL++E++P
Sbjct: 410 ELWGKSSLNTVIFTEPDFSYLEALAPYQPLAMKCIYCPIDTRLNFIQVSKLLKEVQP 466

Component of the Integrator complex, a complex involved in the small nuclear RNAs (snRNA) U1 and U2 transcription and in their 3'-box-dependent processing. The Integrator complex is associated with the C-terminal domain (CTD) of RNA polymerase II largest subunit (POLR2A) and is recruited to the U1 and U2 snRNAs genes.

Bos taurus (taxid: 9913)

>sp|A7SBF0|INT9_NEMVE Integrator complex subunit 9 homolog OS=Nematostella vectensis GN=ints9 PE=3 SV=1

 Score =  179 bits (455), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 98/257 (38%), Positives = 146/257 (56%), Gaps = 53/257 (20%)

Query: 2   KQSKVYLPEEPFPHAHLVKTGRLKHFKSIHDDAFNAEFRQPCIVFCGHPSLRFGDSVHFV 61
           KQ+KVYLPE PFPHA L+K  RLK F ++H+  F++ F+ PC+VF GHPSLR+GD+VHF+
Sbjct: 355 KQTKVYLPEPPFPHAELLKEARLKVFSNLHN-GFSSSFKTPCVVFTGHPSLRYGDAVHFM 413

Query: 62  QLWGSNPLHTIIFTEPDFPYVEALAPFQPLAMKSIHCPIDTSLNFNQANKLIRELKPSTL 121
           ++WG +  +T+IFTEPDFPY+EALAP+QPLAMK+ +CPID  LNF QANKL         
Sbjct: 414 EIWGKSGNNTVIFTEPDFPYLEALAPYQPLAMKTCYCPIDPRLNFAQANKL--------- 464

Query: 122 WSRRYLPRWCSGQGATYLGGVVVKALPPRPMDQQALKNANVLLLSGLTQTPTSNPDAMLG 181
                                 +K L PR          ++++    ++ P  +P     
Sbjct: 465 ----------------------LKELQPR----------HLVMPESYSRPPVIHPHRT-- 490

Query: 182 ELCMTVVGTLRANGKVDRKVLTLKRGEVLKIPLKRKRTRVNMSAEIAEAVEPCELRPGLA 241
           +L +   G           + T    +V  +P+ R   +V ++ E++  + P  +RPG+A
Sbjct: 491 DLTIEDPGC---------SLTTFNHLDVAALPISRSFEKVVIANELSSCLHPQHVRPGVA 541

Query: 242 IASIKGNLKVKDNQYCI 258
           +A++ G L  KDN+Y +
Sbjct: 542 VATLTGTLVTKDNKYTL 558

Component of the Integrator complex, a complex involved in the small nuclear RNAs (snRNA) U1 and U2 transcription and in their 3'-box-dependent processing.

Nematostella vectensis (taxid: 45351)

>sp|Q5ZKK2|INT9_CHICK Integrator complex subunit 9 OS=Gallus gallus GN=INTS9 PE=2 SV=1

 Score =  179 bits (454), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 76/117 (64%), Positives = 101/117 (86%), Gaps = 1/117 (0%)

Query: 2   KQSKVYLPEEPFPHAHLVKTGRLKHFKSIHDDAFNAEFRQPCIVFCGHPSLRFGDSVHFV 61
           KQ+KVYLPE PFPHA L++T +LKH+ SIH D F+ +F+QPC++F GHPSLRFGD VHF+
Sbjct: 351 KQTKVYLPEPPFPHAELIQTNKLKHYPSIHGD-FSNDFKQPCVIFTGHPSLRFGDVVHFM 409

Query: 62  QLWGSNPLHTIIFTEPDFPYVEALAPFQPLAMKSIHCPIDTSLNFNQANKLIRELKP 118
           +LWG + L+T+IFTEPDF Y++ALAP+QPLAMK ++CPIDT LNF Q +KL++E++P
Sbjct: 410 ELWGKSSLNTVIFTEPDFSYLDALAPYQPLAMKCVYCPIDTRLNFIQVSKLLKEVQP 466

Component of the Integrator complex, a complex involved in the small nuclear RNAs (snRNA) U1 and U2 transcription and in their 3'-box-dependent processing.

Gallus gallus (taxid: 9031)

>sp|Q6DFF4|INT9_XENLA Integrator complex subunit 9 OS=Xenopus laevis GN=ints9 PE=2 SV=1

 Score =  174 bits (442), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 74/117 (63%), Positives = 100/117 (85%), Gaps = 1/117 (0%)

Query: 2   KQSKVYLPEEPFPHAHLVKTGRLKHFKSIHDDAFNAEFRQPCIVFCGHPSLRFGDSVHFV 61
           KQ+KVYLPE PFPHA L+++ +LKH+ +IH D F+ +F+QPC+VF GHP+LRFGD VHF+
Sbjct: 351 KQNKVYLPEPPFPHAELIQSNKLKHYPNIHGD-FSNDFKQPCVVFTGHPTLRFGDVVHFM 409

Query: 62  QLWGSNPLHTIIFTEPDFPYVEALAPFQPLAMKSIHCPIDTSLNFNQANKLIRELKP 118
           +LWG + L+T+IFTEPDF Y++ALAP+QPLAMK ++CPIDT LNF Q  KL++E++P
Sbjct: 410 ELWGKSSLNTVIFTEPDFSYLDALAPYQPLAMKCVYCPIDTRLNFIQVTKLLKEVQP 466

Component of the Integrator complex, a complex involved in the small nuclear RNAs (snRNA) U1 and U2 transcription and in their 3'-box-dependent processing.

Xenopus laevis (taxid: 8355)

>sp|Q54SH0|INT9_DICDI Integrator complex subunit 9 homolog OS=Dictyostelium discoideum GN=ints9 PE=3 SV=1

 Score = 99.8 bits (247), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 52/158 (32%), Positives = 82/158 (51%), Gaps = 4/158 (2%)

Query: 2   KQSKVYLPEEPFPHAHLVKTGRLKHFKSIHDDAFNAEFRQPCIVFCGHPSLRFGDSVHFV 61
           KQ + ++PE PF H  L++ G+ + ++ +H    N +   PCI+F GHPS R GD    +
Sbjct: 388 KQERAFMPETPFLHQDLMRKGQFQAYQHVHS---NFQANDPCIIFTGHPSCRIGDITTLI 444

Query: 62  QLWGSNPLHTIIFTEPDFPYVEALAPFQPLAMKSIHCPIDTSLNFNQANKLIRELKPSTL 121
           +L+  NP ++I+  EPDF +   + PF     +    PID  +NFN+AN LI +L P  L
Sbjct: 445 KLY-DNPKNSILLIEPDFDFKSTVLPFSKQISRIQFLPIDPRINFNEANLLISKLSPKHL 503

Query: 122 WSRRYLPRWCSGQGATYLGGVVVKALPPRPMDQQALKN 159
              R    +   + +    G+V   LP   +  Q  +N
Sbjct: 504 IIPRIYKNYVKNKHSNGNFGIVTTILPLDTIKIQNNQN 541

Component of the Integrator complex, a complex involved in the small nuclear RNAs (snRNA) U1 and U2 transcription and in their 3'-box-dependent processing.

Dictyostelium discoideum (taxid: 44689)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	263
322799917	675	hypothetical protein SINV_14498 [Solenop	0.836	0.325	0.513	3e-68
307202731	608	Integrator complex subunit 9 [Harpegnath	0.783	0.338	0.529	8e-68
350408420	661	PREDICTED: integrator complex subunit 9-	0.783	0.311	0.521	2e-67
340719906	661	PREDICTED: integrator complex subunit 9-	0.783	0.311	0.521	2e-67
345498046	662	PREDICTED: LOW QUALITY PROTEIN: integrat	0.783	0.311	0.509	3e-67
383862659	661	PREDICTED: integrator complex subunit 9-	0.783	0.311	0.517	7e-67
380023750	661	PREDICTED: integrator complex subunit 9-	0.783	0.311	0.517	8e-67
307189043	661	Integrator complex subunit 9 [Camponotus	0.783	0.311	0.513	9e-67
242025660	664	conserved hypothetical protein [Pediculu	0.783	0.310	0.503	1e-66
332025996	638	Integrator complex subunit 9 [Acromyrmex	0.783	0.322	0.509	1e-66

>gi|322799917|gb|EFZ21058.1| hypothetical protein SINV_14498 [Solenopsis invicta]

 Score =  264 bits (674), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 132/257 (51%), Positives = 172/257 (66%), Gaps = 37/257 (14%)

Query: 2   KQSKVYLPEEPFPHAHLVKTGRLKHFKSIHDDAFNAEFRQPCIVFCGHPSLRFGDSVHFV 61
           KQ+KVYLPEEPFPHA LVK  RLKH+ S + + F+ ++RQPC+VFCGHPSLRFGD+VHFV
Sbjct: 351 KQNKVYLPEEPFPHAFLVKNARLKHYTSTYAEGFSNDYRQPCVVFCGHPSLRFGDAVHFV 410

Query: 62  QLWGSNPLHTIIFTEPDFPYVEALAPFQPLAMKSIHCPIDTSLNFNQANKLIRELKPSTL 121
           QLWG+NPLHT+IFTEPDFPY++ALAPFQPLAMK++HCPIDTSLNF QANKLIR+LKP  L
Sbjct: 411 QLWGNNPLHTVIFTEPDFPYIDALAPFQPLAMKAVHCPIDTSLNFTQANKLIRDLKPEHL 470

Query: 122 WSRRYLPRWCSGQGATYLGGVVVKALPPRPMDQQALKNANVLLLSGLTQTPTSNPDAMLG 181
                +P               V   PP      A    ++++           P   + 
Sbjct: 471 ----VIPE--------------VYTQPP----AMAQHRTDLVI----------EPIGRVS 498

Query: 182 ELCMTVVGTLRANGKVDRKVLTLKRGEVLKIPLKRKRTRVNMSAEIAEAVEPCELRPGLA 241
                ++   +     D+ ++T KRGEV+K+PLKRK+ RV +  E+A ++ P E+RPGL+
Sbjct: 499 SKITCIISLFK-----DKPLITFKRGEVIKLPLKRKKGRVFIEPELASSIVPSEVRPGLS 553

Query: 242 IASIKGNLKVKDNQYCI 258
           +AS+ G L+VKDN Y I
Sbjct: 554 LASVTGELEVKDNVYTI 570

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307202731|gb|EFN82022.1| Integrator complex subunit 9 [Harpegnathos saltator]

 Score =  263 bits (671), Expect = 8e-68,   Method: Compositional matrix adjust.
 Identities = 136/257 (52%), Positives = 170/257 (66%), Gaps = 51/257 (19%)

Query: 2   KQSKVYLPEEPFPHAHLVKTGRLKHFKSIHDDAFNAEFRQPCIVFCGHPSLRFGDSVHFV 61
           KQ+KVYLPEEPFPHA LVK  RLKHF S + + F+ ++RQPC+VFCGHPSLRFGD+VHFV
Sbjct: 320 KQNKVYLPEEPFPHAFLVKNARLKHFTSTYAEGFSNDYRQPCVVFCGHPSLRFGDAVHFV 379

Query: 62  QLWGSNPLHTIIFTEPDFPYVEALAPFQPLAMKSIHCPIDTSLNFNQANKLIRELKPSTL 121
           QLWG+NPLHTIIFTEPDFPY++ALAPFQPLAMK++HCPIDTSLNF QANKLIR+LKP  L
Sbjct: 380 QLWGNNPLHTIIFTEPDFPYLDALAPFQPLAMKAVHCPIDTSLNFTQANKLIRDLKPEHL 439

Query: 122 WSRRYLPRWCSGQGATYLGGVVVKALPPRPMDQQALKNANVLLLSGLTQTPTSNPDAMLG 181
                +P  C  Q             PP     +A                         
Sbjct: 440 ----VIPE-CYTQ-------------PPLTASHRA------------------------- 456

Query: 182 ELCMTVVGTLRANGKVDRKVLTLKRGEVLKIPLKRKRTRVNMSAEIAEAVEPCELRPGLA 241
           +L +  VG        ++ ++T KRGEV+K+PLKRK+ RV +  E+A ++ P E+RPGL+
Sbjct: 457 DLVIEPVG--------EKPLITFKRGEVIKLPLKRKKGRVFIEPELAGSIVPNEIRPGLS 508

Query: 242 IASIKGNLKVKDNQYCI 258
           +AS+ G L+VKDN Y I
Sbjct: 509 LASVTGELEVKDNVYTI 525

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350408420|ref|XP_003488398.1| PREDICTED: integrator complex subunit 9-like isoform 2 [Bombus impatiens]

 Score =  261 bits (667), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 134/257 (52%), Positives = 169/257 (65%), Gaps = 51/257 (19%)

Query: 2   KQSKVYLPEEPFPHAHLVKTGRLKHFKSIHDDAFNAEFRQPCIVFCGHPSLRFGDSVHFV 61
           KQ+KVYLPEEPFPHA LVK  RLKHF SI+ + F++++RQPC+VFCGHPSLRFGD+VHFV
Sbjct: 351 KQNKVYLPEEPFPHAFLVKNARLKHFTSIYAEGFSSDYRQPCVVFCGHPSLRFGDAVHFV 410

Query: 62  QLWGSNPLHTIIFTEPDFPYVEALAPFQPLAMKSIHCPIDTSLNFNQANKLIRELKPSTL 121
           QLWG+NP HTIIFTEPDFPY++ALAPFQPLAMK++HCPIDTSLNF QANKLIR+LKP  L
Sbjct: 411 QLWGNNPQHTIIFTEPDFPYLDALAPFQPLAMKAVHCPIDTSLNFTQANKLIRDLKPEHL 470

Query: 122 WSRRYLPRWCSGQGATYLGGVVVKALPPRPMDQQALKNANVLLLSGLTQTPTSNPDAMLG 181
                                                    ++    TQ P + P     
Sbjct: 471 -----------------------------------------VIPECYTQPPITAPHRT-- 487

Query: 182 ELCMTVVGTLRANGKVDRKVLTLKRGEVLKIPLKRKRTRVNMSAEIAEAVEPCELRPGLA 241
           +L +  VG        ++ ++T KRGEV+K+PLKRK+ RV +  E+A  + P E+RPGL+
Sbjct: 488 DLVIEPVG--------EKPLITFKRGEVIKLPLKRKKGRVFIEPELAGNIIPNEIRPGLS 539

Query: 242 IASIKGNLKVKDNQYCI 258
           +AS+ G L+VKDN Y I
Sbjct: 540 LASVTGELEVKDNVYTI 556

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340719906|ref|XP_003398385.1| PREDICTED: integrator complex subunit 9-like [Bombus terrestris]

 Score =  261 bits (667), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 134/257 (52%), Positives = 169/257 (65%), Gaps = 51/257 (19%)

Query: 2   KQSKVYLPEEPFPHAHLVKTGRLKHFKSIHDDAFNAEFRQPCIVFCGHPSLRFGDSVHFV 61
           KQ+KVYLPEEPFPHA LVK  RLKHF SI+ + F++++RQPC+VFCGHPSLRFGD+VHFV
Sbjct: 351 KQNKVYLPEEPFPHAFLVKNARLKHFTSIYAEGFSSDYRQPCVVFCGHPSLRFGDAVHFV 410

Query: 62  QLWGSNPLHTIIFTEPDFPYVEALAPFQPLAMKSIHCPIDTSLNFNQANKLIRELKPSTL 121
           QLWG+NP HTIIFTEPDFPY++ALAPFQPLAMK++HCPIDTSLNF QANKLIR+LKP  L
Sbjct: 411 QLWGNNPQHTIIFTEPDFPYLDALAPFQPLAMKAVHCPIDTSLNFTQANKLIRDLKPEHL 470

Query: 122 WSRRYLPRWCSGQGATYLGGVVVKALPPRPMDQQALKNANVLLLSGLTQTPTSNPDAMLG 181
                                                    ++    TQ P + P     
Sbjct: 471 -----------------------------------------VIPECYTQPPITAPHRT-- 487

Query: 182 ELCMTVVGTLRANGKVDRKVLTLKRGEVLKIPLKRKRTRVNMSAEIAEAVEPCELRPGLA 241
           +L +  VG        ++ ++T KRGEV+K+PLKRK+ RV +  E+A  + P E+RPGL+
Sbjct: 488 DLVIEPVG--------EKPLITFKRGEVIKLPLKRKKGRVFIEPELAGNIIPNEIRPGLS 539

Query: 242 IASIKGNLKVKDNQYCI 258
           +AS+ G L+VKDN Y I
Sbjct: 540 LASVTGELEVKDNVYTI 556

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345498046|ref|XP_003428131.1| PREDICTED: LOW QUALITY PROTEIN: integrator complex subunit 9-like [Nasonia vitripennis]

 Score =  261 bits (666), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 131/257 (50%), Positives = 169/257 (65%), Gaps = 51/257 (19%)

Query: 2   KQSKVYLPEEPFPHAHLVKTGRLKHFKSIHDDAFNAEFRQPCIVFCGHPSLRFGDSVHFV 61
           KQ+KVYLPEEPFPHA LVK  RLK+F S + + F+ ++RQPC+VFCGHPSLRFGD+VHF+
Sbjct: 351 KQNKVYLPEEPFPHAFLVKNARLKYFTSTYAEGFSTDYRQPCVVFCGHPSLRFGDAVHFI 410

Query: 62  QLWGSNPLHTIIFTEPDFPYVEALAPFQPLAMKSIHCPIDTSLNFNQANKLIRELKPSTL 121
           Q+WG++P HTIIFTEPDFPY+EALAPFQPLAMK++HCPIDTSLNF QANKLIR+LKP  L
Sbjct: 411 QMWGNSPQHTIIFTEPDFPYIEALAPFQPLAMKAVHCPIDTSLNFTQANKLIRDLKPDNL 470

Query: 122 WSRRYLPRWCSGQGATYLGGVVVKALPPRPMDQQALKNANVLLLSGLTQTPTSNPDAMLG 181
                                    +P R M                 Q P + P     
Sbjct: 471 ------------------------VIPERYM-----------------QPPMTAPHR--A 487

Query: 182 ELCMTVVGTLRANGKVDRKVLTLKRGEVLKIPLKRKRTRVNMSAEIAEAVEPCELRPGLA 241
           +L +  VG        ++ ++T KRGEV+K+PLKR+R R+ +  E+A+ + P E+RPGL+
Sbjct: 488 DLVIEPVG--------EKPLITFKRGEVIKLPLKRRRGRIFIEPELADNIIPSEIRPGLS 539

Query: 242 IASIKGNLKVKDNQYCI 258
           +AS+ G L+VKDN Y I
Sbjct: 540 LASVSGELEVKDNVYTI 556

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383862659|ref|XP_003706801.1| PREDICTED: integrator complex subunit 9-like [Megachile rotundata]

 Score =  259 bits (662), Expect = 7e-67,   Method: Compositional matrix adjust.
 Identities = 133/257 (51%), Positives = 168/257 (65%), Gaps = 51/257 (19%)

Query: 2   KQSKVYLPEEPFPHAHLVKTGRLKHFKSIHDDAFNAEFRQPCIVFCGHPSLRFGDSVHFV 61
           KQ+KVYLPEEPFPHA LVK  RLKHF S + + F++++RQPC+VFCGHPSLRFGD+VHFV
Sbjct: 351 KQNKVYLPEEPFPHAFLVKNARLKHFTSTYAEGFSSDYRQPCVVFCGHPSLRFGDAVHFV 410

Query: 62  QLWGSNPLHTIIFTEPDFPYVEALAPFQPLAMKSIHCPIDTSLNFNQANKLIRELKPSTL 121
           QLWG+NP HTIIFTEPDFPY++ALAPFQPLAMK++HCPIDTSLNF QANKLIR+LKP  L
Sbjct: 411 QLWGNNPQHTIIFTEPDFPYLDALAPFQPLAMKAVHCPIDTSLNFTQANKLIRDLKPEHL 470

Query: 122 WSRRYLPRWCSGQGATYLGGVVVKALPPRPMDQQALKNANVLLLSGLTQTPTSNPDAMLG 181
                                                    ++    TQ P + P     
Sbjct: 471 -----------------------------------------VIPECYTQPPMTAPHRT-- 487

Query: 182 ELCMTVVGTLRANGKVDRKVLTLKRGEVLKIPLKRKRTRVNMSAEIAEAVEPCELRPGLA 241
           +L +  VG        ++ ++T KRGEV+K+PLKRK+ RV +  E+A  + P E+RPGL+
Sbjct: 488 DLVIEPVG--------EKPLITFKRGEVIKLPLKRKKGRVFIEPELAGNIIPNEIRPGLS 539

Query: 242 IASIKGNLKVKDNQYCI 258
           +AS+ G L+VKDN Y I
Sbjct: 540 LASVTGELEVKDNVYTI 556

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380023750|ref|XP_003695675.1| PREDICTED: integrator complex subunit 9-like isoform 1 [Apis florea]

 Score =  259 bits (662), Expect = 8e-67,   Method: Compositional matrix adjust.
 Identities = 133/257 (51%), Positives = 168/257 (65%), Gaps = 51/257 (19%)

Query: 2   KQSKVYLPEEPFPHAHLVKTGRLKHFKSIHDDAFNAEFRQPCIVFCGHPSLRFGDSVHFV 61
           KQ+KVYLPEEPFPHA LVK  RLKHF S + + F++++RQPC+VFCGHPSLRFGD+VHFV
Sbjct: 351 KQNKVYLPEEPFPHAFLVKNARLKHFTSTYAEGFSSDYRQPCVVFCGHPSLRFGDAVHFV 410

Query: 62  QLWGSNPLHTIIFTEPDFPYVEALAPFQPLAMKSIHCPIDTSLNFNQANKLIRELKPSTL 121
           QLWG+NP HTIIFTEPDFPY++ALAPFQPLAMK++HCPIDTSLNF QANKLIR+LKP  L
Sbjct: 411 QLWGNNPQHTIIFTEPDFPYLDALAPFQPLAMKAVHCPIDTSLNFTQANKLIRDLKPEHL 470

Query: 122 WSRRYLPRWCSGQGATYLGGVVVKALPPRPMDQQALKNANVLLLSGLTQTPTSNPDAMLG 181
                                                    ++    TQ P + P     
Sbjct: 471 -----------------------------------------VIPECYTQPPITAPHRT-- 487

Query: 182 ELCMTVVGTLRANGKVDRKVLTLKRGEVLKIPLKRKRTRVNMSAEIAEAVEPCELRPGLA 241
           +L +  VG        ++ ++T KRGEV+K+PLKRK+ RV +  E+A  + P E+RPGL+
Sbjct: 488 DLVIEPVG--------EKPLITFKRGEVIKLPLKRKKGRVFIEPELAGNIIPNEIRPGLS 539

Query: 242 IASIKGNLKVKDNQYCI 258
           +AS+ G L+VKDN Y I
Sbjct: 540 LASVTGELEVKDNVYTI 556

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307189043|gb|EFN73542.1| Integrator complex subunit 9 [Camponotus floridanus]

 Score =  259 bits (662), Expect = 9e-67,   Method: Compositional matrix adjust.
 Identities = 132/257 (51%), Positives = 168/257 (65%), Gaps = 51/257 (19%)

Query: 2   KQSKVYLPEEPFPHAHLVKTGRLKHFKSIHDDAFNAEFRQPCIVFCGHPSLRFGDSVHFV 61
           KQ+KVYLPEEPFPHA LVK  RLKH+ S + + F+ ++RQPC+VFCGHPSLRFGD+VHFV
Sbjct: 351 KQNKVYLPEEPFPHAFLVKNARLKHYTSTYAEGFSNDYRQPCVVFCGHPSLRFGDAVHFV 410

Query: 62  QLWGSNPLHTIIFTEPDFPYVEALAPFQPLAMKSIHCPIDTSLNFNQANKLIRELKPSTL 121
           QLWG+NPLHT+IFTEPDFPY++ALAPFQPLAMK++HCPIDTSLNF QANKLIR+LKP  L
Sbjct: 411 QLWGNNPLHTVIFTEPDFPYLDALAPFQPLAMKAVHCPIDTSLNFTQANKLIRDLKPEHL 470

Query: 122 WSRRYLPRWCSGQGATYLGGVVVKALPPRPMDQQALKNANVLLLSGLTQTPTSNPDAMLG 181
                                                    ++    TQ P + P     
Sbjct: 471 -----------------------------------------VIPEVYTQPPLTAPHRT-- 487

Query: 182 ELCMTVVGTLRANGKVDRKVLTLKRGEVLKIPLKRKRTRVNMSAEIAEAVEPCELRPGLA 241
           +L +  VG        ++ ++T KRGEV+K+PLKRK+ RV +  E+A  + P E+RPGL+
Sbjct: 488 DLVIEPVG--------EKPLITFKRGEVIKLPLKRKKGRVFIEPELASNIIPNEVRPGLS 539

Query: 242 IASIKGNLKVKDNQYCI 258
           +AS+ G L+VKDN Y I
Sbjct: 540 LASVTGELEVKDNVYTI 556

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242025660|ref|XP_002433242.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212518783|gb|EEB20504.1| conserved hypothetical protein [Pediculus humanus corporis]

 Score =  259 bits (661), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 130/258 (50%), Positives = 167/258 (64%), Gaps = 52/258 (20%)

Query: 2   KQSKVYLPEEPFPHAHLVKTGRLKHFKSIHDDAFNAEFRQPCIVFCGHPSLRFGDSVHFV 61
           KQ+KVYLPEEPFPHA LVK  RLKHFK+I+ + F+AEFRQPC+VFCGHPSLRFGDSVHF+
Sbjct: 350 KQNKVYLPEEPFPHAFLVKNSRLKHFKNIYAENFSAEFRQPCVVFCGHPSLRFGDSVHFM 409

Query: 62  QLWGSNPLHTIIFTEPDFPYVEALAPFQPLAMKSIHCPIDTSLNFNQANKLIRELKPSTL 121
           +LWGSNPLH++IFTEPDFPY++A++PFQPL MK +HCPIDTSLNF QA KLIRELKP TL
Sbjct: 410 ELWGSNPLHSVIFTEPDFPYLDAISPFQPLQMKVVHCPIDTSLNFTQATKLIRELKPGTL 469

Query: 122 WSRRYLPRWCSGQGATYLGGVVVKALPPRPMDQQALKNANVLLLSGLTQTPTSNPDAMLG 181
                               V+ ++    P+      +    LL    + PT        
Sbjct: 470 --------------------VIPESYTKNPLGSSQRTD----LLIDAQERPT-------- 497

Query: 182 ELCMTVVGTLRANGKVDRKVLTLKRGEVLKIPLKRKRTRVNMSAEIAEAVEPCELRPGLA 241
                               LT+KRGEV+K+P+KRK+ +  MSA++A  + PCE RPG++
Sbjct: 498 --------------------LTMKRGEVIKLPVKRKKVKAEMSADLASELIPCETRPGVS 537

Query: 242 IASIKGNLKVKDNQYCID 259
           + S+ G L + DN+Y I+
Sbjct: 538 LTSVTGKLILNDNKYKIE 555

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332025996|gb|EGI66149.1| Integrator complex subunit 9 [Acromyrmex echinatior]

 Score =  258 bits (660), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 131/257 (50%), Positives = 165/257 (64%), Gaps = 51/257 (19%)

Query: 2   KQSKVYLPEEPFPHAHLVKTGRLKHFKSIHDDAFNAEFRQPCIVFCGHPSLRFGDSVHFV 61
           KQ+KVYLPEEPFPHA LVK  RLKH+ S + + F+ ++RQPC+VFCGHPSLRFGD+VHFV
Sbjct: 328 KQNKVYLPEEPFPHAFLVKNARLKHYTSTYAEGFSNDYRQPCVVFCGHPSLRFGDAVHFV 387

Query: 62  QLWGSNPLHTIIFTEPDFPYVEALAPFQPLAMKSIHCPIDTSLNFNQANKLIRELKPSTL 121
           QLWG NPLHT+IFTEPDFPY+EALAPFQPL+MK++HCPIDTSLNF QANKLIR+LKP  L
Sbjct: 388 QLWGGNPLHTVIFTEPDFPYLEALAPFQPLSMKAVHCPIDTSLNFTQANKLIRDLKPEHL 447

Query: 122 WSRRYLPRWCSGQGATYLGGVVVKALPPRPMDQQALKNANVLLLSGLTQTPTSNPDAMLG 181
                                                    ++    TQ P   P     
Sbjct: 448 -----------------------------------------VIPEVYTQPPGMAPHRT-- 464

Query: 182 ELCMTVVGTLRANGKVDRKVLTLKRGEVLKIPLKRKRTRVNMSAEIAEAVEPCELRPGLA 241
           +L +  +G        ++ ++T KRGEV+K+PLKRK+ RV +  E+A  + P E+RPGL+
Sbjct: 465 DLVIESIG--------EKPLITFKRGEVIKLPLKRKKGRVFIEPELASNIVPSEVRPGLS 516

Query: 242 IASIKGNLKVKDNQYCI 258
           +AS+ G L VKDN Y I
Sbjct: 517 LASVTGELDVKDNVYTI 533

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	263
FB|FBgn0036570	654	IntS9 "Integrator 9" [Drosophi	0.456	0.183	0.658	3.8e-60
MGI|MGI:1098533	658	Ints9 "integrator complex subu	0.441	0.176	0.692	1.1e-54
UNIPROTKB|F6XI08	658	INTS9 "Uncharacterized protein	0.441	0.176	0.675	1.1e-54
UNIPROTKB|E2QVB2	409	INTS9 "Uncharacterized protein	0.441	0.283	0.675	1.1e-54
RGD|1311539	659	Ints9 "integrator complex subu	0.441	0.176	0.683	1.4e-54
UNIPROTKB|H7BYQ6	552	INTS9 "Integrator complex subu	0.441	0.210	0.692	1.4e-54
UNIPROTKB|Q9NV88	658	INTS9 "Integrator complex subu	0.441	0.176	0.692	1.4e-54
UNIPROTKB|F1RJQ5	576	INTS9 "Uncharacterized protein	0.441	0.201	0.683	2.9e-54
UNIPROTKB|F1MMA6	658	INTS9 "Integrator complex subu	0.441	0.176	0.683	3.1e-54
UNIPROTKB|Q2KJA6	658	INTS9 "Integrator complex subu	0.441	0.176	0.683	3.1e-54

FB|FBgn0036570 IntS9 "Integrator 9" [Drosophila melanogaster (taxid:7227)]

 Score = 488 (176.8 bits), Expect = 3.8e-60, Sum P(2) = 3.8e-60
 Identities = 79/120 (65%), Positives = 105/120 (87%)

Query:     2 KQSKVYLPEEPFPHAHLVKTGRLKHFKSIHDDAFNAEFRQPCIVFCGHPSLRFGDSVHFV 61
             KQ+KVYLP++PFPHA  ++  +LKH+  +  + F+ +FRQPC+VFCGHPSLRFGD+VHF+
Sbjct:   350 KQNKVYLPDDPFPHAFYLRNNKLKHYNHVFSEGFSKDFRQPCVVFCGHPSLRFGDAVHFI 409

Query:    62 QLWGSNPLHTIIFTEPDFPYVEALAPFQPLAMKSIHCPIDTSLNFNQANKLIRELKPSTL 121
             ++WG+NP ++IIFTEPDFPY++ LAPFQPLAMK+ +CPIDTSLN+ QANKLI+ELKP+ L
Sbjct:   410 EMWGNNPNNSIIFTEPDFPYLQVLAPFQPLAMKAFYCPIDTSLNYQQANKLIKELKPNVL 469

GO:0005847 "mRNA cleavage and polyadenylation specificity factor complex" evidence=ISS

GO:0006379 "mRNA cleavage" evidence=ISS

GO:0006378 "mRNA polyadenylation" evidence=ISS

GO:0034472 "snRNA 3'-end processing" evidence=IDA

GO:0032039 "integrator complex" evidence=ISS

GO:0016180 "snRNA processing" evidence=ISS

MGI|MGI:1098533 Ints9 "integrator complex subunit 9" [Mus musculus (taxid:10090)]

 Score = 464 (168.4 bits), Expect = 1.1e-54, Sum P(2) = 1.1e-54
 Identities = 81/117 (69%), Positives = 102/117 (87%)

Query:     2 KQSKVYLPEEPFPHAHLVKTGRLKHFKSIHDDAFNAEFRQPCIVFCGHPSLRFGDSVHFV 61
             KQSKVYLPE PFPHA L++T +LKH++SIH D F+ +FRQPC++F GHPSLRFGD VHF+
Sbjct:   351 KQSKVYLPEPPFPHAELIQTNKLKHYRSIHGD-FSNDFRQPCVLFTGHPSLRFGDVVHFM 409

Query:    62 QLWGSNPLHTIIFTEPDFPYVEALAPFQPLAMKSIHCPIDTSLNFNQANKLIRELKP 118
             +LWG + L+TIIFTEPDF Y+EALAP+QPLAMK I+CPIDT LNF Q +KL++E++P
Sbjct:   410 ELWGKSSLNTIIFTEPDFSYLEALAPYQPLAMKCIYCPIDTRLNFIQVSKLLKEVQP 466

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0016180 "snRNA processing" evidence=ISO

GO:0032039 "integrator complex" evidence=ISO

UNIPROTKB|F6XI08 INTS9 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 461 (167.3 bits), Expect = 1.1e-54, Sum P(2) = 1.1e-54
 Identities = 79/117 (67%), Positives = 102/117 (87%)

Query:     2 KQSKVYLPEEPFPHAHLVKTGRLKHFKSIHDDAFNAEFRQPCIVFCGHPSLRFGDSVHFV 61
             KQ+KVYLPE PFPHA L++T +LKH+ S+H D F+++FRQPC+VF GHPSLRFGD VHF+
Sbjct:   351 KQTKVYLPEPPFPHAELIQTNKLKHYPSLHGD-FSSDFRQPCVVFTGHPSLRFGDVVHFM 409

Query:    62 QLWGSNPLHTIIFTEPDFPYVEALAPFQPLAMKSIHCPIDTSLNFNQANKLIRELKP 118
             +LWG + L+T+IFTEPDF Y+EALAP+QPLAMK I+CPIDT LNF Q +KL++E++P
Sbjct:   410 ELWGKSSLNTVIFTEPDFSYLEALAPYQPLAMKCIYCPIDTRLNFIQVSKLLKEVQP 466

GO:0032039 "integrator complex" evidence=IEA

GO:0016180 "snRNA processing" evidence=IEA

UNIPROTKB|E2QVB2 INTS9 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 461 (167.3 bits), Expect = 1.1e-54, Sum P(2) = 1.1e-54
 Identities = 79/117 (67%), Positives = 102/117 (87%)

Query:     2 KQSKVYLPEEPFPHAHLVKTGRLKHFKSIHDDAFNAEFRQPCIVFCGHPSLRFGDSVHFV 61
             KQ+KVYLPE PFPHA L++T +LKH+ S+H D F+++FRQPC+VF GHPSLRFGD VHF+
Sbjct:   102 KQTKVYLPEPPFPHAELIQTNKLKHYPSLHGD-FSSDFRQPCVVFTGHPSLRFGDVVHFM 160

Query:    62 QLWGSNPLHTIIFTEPDFPYVEALAPFQPLAMKSIHCPIDTSLNFNQANKLIRELKP 118
             +LWG + L+T+IFTEPDF Y+EALAP+QPLAMK I+CPIDT LNF Q +KL++E++P
Sbjct:   161 ELWGKSSLNTVIFTEPDFSYLEALAPYQPLAMKCIYCPIDTRLNFIQVSKLLKEVQP 217

GO:0032039 "integrator complex" evidence=IEA

GO:0016180 "snRNA processing" evidence=IEA

RGD|1311539 Ints9 "integrator complex subunit 9" [Rattus norvegicus (taxid:10116)]

 Score = 463 (168.0 bits), Expect = 1.4e-54, Sum P(2) = 1.4e-54
 Identities = 80/117 (68%), Positives = 102/117 (87%)

Query:     2 KQSKVYLPEEPFPHAHLVKTGRLKHFKSIHDDAFNAEFRQPCIVFCGHPSLRFGDSVHFV 61
             KQSKVYLPE PFPHA L++T +LKH++SIH D F+ +FRQPC++F GHPSLRFGD VHF+
Sbjct:   352 KQSKVYLPEPPFPHAELIQTNKLKHYRSIHGD-FSHDFRQPCVLFTGHPSLRFGDVVHFM 410

Query:    62 QLWGSNPLHTIIFTEPDFPYVEALAPFQPLAMKSIHCPIDTSLNFNQANKLIRELKP 118
             +LWG + L+T+IFTEPDF Y+EALAP+QPLAMK I+CPIDT LNF Q +KL++E++P
Sbjct:   411 ELWGKSSLNTVIFTEPDFSYLEALAPYQPLAMKCIYCPIDTRLNFIQVSKLLKEVQP 467

GO:0016180 "snRNA processing" evidence=IEA;ISO

GO:0032039 "integrator complex" evidence=IEA;ISO

UNIPROTKB|H7BYQ6 INTS9 "Integrator complex subunit 9" [Homo sapiens (taxid:9606)]

 Score = 463 (168.0 bits), Expect = 1.4e-54, Sum P(2) = 1.4e-54
 Identities = 81/117 (69%), Positives = 101/117 (86%)

Query:     2 KQSKVYLPEEPFPHAHLVKTGRLKHFKSIHDDAFNAEFRQPCIVFCGHPSLRFGDSVHFV 61
             KQSKVYLPE PFPHA L++T +LKH+ SIH D F+ +FRQPC+VF GHPSLRFGD VHF+
Sbjct:   245 KQSKVYLPEPPFPHAELIQTNKLKHYPSIHGD-FSNDFRQPCVVFTGHPSLRFGDVVHFM 303

Query:    62 QLWGSNPLHTIIFTEPDFPYVEALAPFQPLAMKSIHCPIDTSLNFNQANKLIRELKP 118
             +LWG + L+T+IFTEPDF Y+EALAP+QPLAMK I+CPIDT LNF Q +KL++E++P
Sbjct:   304 ELWGKSSLNTVIFTEPDFSYLEALAPYQPLAMKCIYCPIDTRLNFIQVSKLLKEVQP 360

GO:0016180 "snRNA processing" evidence=IEA

GO:0032039 "integrator complex" evidence=IEA

UNIPROTKB|Q9NV88 INTS9 "Integrator complex subunit 9" [Homo sapiens (taxid:9606)]

 Score = 463 (168.0 bits), Expect = 1.4e-54, Sum P(2) = 1.4e-54
 Identities = 81/117 (69%), Positives = 101/117 (86%)

Query:     2 KQSKVYLPEEPFPHAHLVKTGRLKHFKSIHDDAFNAEFRQPCIVFCGHPSLRFGDSVHFV 61
             KQSKVYLPE PFPHA L++T +LKH+ SIH D F+ +FRQPC+VF GHPSLRFGD VHF+
Sbjct:   351 KQSKVYLPEPPFPHAELIQTNKLKHYPSIHGD-FSNDFRQPCVVFTGHPSLRFGDVVHFM 409

Query:    62 QLWGSNPLHTIIFTEPDFPYVEALAPFQPLAMKSIHCPIDTSLNFNQANKLIRELKP 118
             +LWG + L+T+IFTEPDF Y+EALAP+QPLAMK I+CPIDT LNF Q +KL++E++P
Sbjct:   410 ELWGKSSLNTVIFTEPDFSYLEALAPYQPLAMKCIYCPIDTRLNFIQVSKLLKEVQP 466

GO:0005515 "protein binding" evidence=IPI

GO:0016180 "snRNA processing" evidence=IDA

GO:0032039 "integrator complex" evidence=IDA

UNIPROTKB|F1RJQ5 INTS9 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 460 (167.0 bits), Expect = 2.9e-54, Sum P(2) = 2.9e-54
 Identities = 80/117 (68%), Positives = 101/117 (86%)

Query:     2 KQSKVYLPEEPFPHAHLVKTGRLKHFKSIHDDAFNAEFRQPCIVFCGHPSLRFGDSVHFV 61
             KQ+KVYLPE PFPHA L++T +LKH+ SIH D F+ +FRQPC+VF GHPSLRFGD VHF+
Sbjct:   269 KQTKVYLPEPPFPHAELIQTNKLKHYPSIHGD-FSNDFRQPCVVFTGHPSLRFGDVVHFM 327

Query:    62 QLWGSNPLHTIIFTEPDFPYVEALAPFQPLAMKSIHCPIDTSLNFNQANKLIRELKP 118
             +LWG + L+T+IFTEPDF Y+EALAP+QPLAMK I+CPIDT LNF Q +KL++E++P
Sbjct:   328 ELWGKSSLNTVIFTEPDFSYLEALAPYQPLAMKCIYCPIDTRLNFIQVSKLLKEVQP 384

GO:0032039 "integrator complex" evidence=IEA

GO:0016180 "snRNA processing" evidence=IEA

UNIPROTKB|F1MMA6 INTS9 "Integrator complex subunit 9" [Bos taurus (taxid:9913)]

 Score = 460 (167.0 bits), Expect = 3.1e-54, Sum P(2) = 3.1e-54
 Identities = 80/117 (68%), Positives = 101/117 (86%)

Query:     2 KQSKVYLPEEPFPHAHLVKTGRLKHFKSIHDDAFNAEFRQPCIVFCGHPSLRFGDSVHFV 61
             KQ+KVYLPE PFPHA L++T +LKH+ SIH D F+ +FRQPC+VF GHPSLRFGD VHF+
Sbjct:   351 KQTKVYLPEPPFPHAELIQTNKLKHYPSIHGD-FSNDFRQPCVVFTGHPSLRFGDVVHFM 409

Query:    62 QLWGSNPLHTIIFTEPDFPYVEALAPFQPLAMKSIHCPIDTSLNFNQANKLIRELKP 118
             +LWG + L+T+IFTEPDF Y+EALAP+QPLAMK I+CPIDT LNF Q +KL++E++P
Sbjct:   410 ELWGKSSLNTVIFTEPDFSYLEALAPYQPLAMKCIYCPIDTRLNFIQVSKLLKEVQP 466

GO:0032039 "integrator complex" evidence=IEA

GO:0016180 "snRNA processing" evidence=IEA

UNIPROTKB|Q2KJA6 INTS9 "Integrator complex subunit 9" [Bos taurus (taxid:9913)]

 Score = 460 (167.0 bits), Expect = 3.1e-54, Sum P(2) = 3.1e-54
 Identities = 80/117 (68%), Positives = 101/117 (86%)

Query:     2 KQSKVYLPEEPFPHAHLVKTGRLKHFKSIHDDAFNAEFRQPCIVFCGHPSLRFGDSVHFV 61
             KQ+KVYLPE PFPHA L++T +LKH+ SIH D F+ +FRQPC+VF GHPSLRFGD VHF+
Sbjct:   351 KQTKVYLPEPPFPHAELIQTNKLKHYPSIHGD-FSNDFRQPCVVFTGHPSLRFGDVVHFM 409

Query:    62 QLWGSNPLHTIIFTEPDFPYVEALAPFQPLAMKSIHCPIDTSLNFNQANKLIRELKP 118
             +LWG + L+T+IFTEPDF Y+EALAP+QPLAMK I+CPIDT LNF Q +KL++E++P
Sbjct:   410 ELWGKSSLNTVIFTEPDFSYLEALAPYQPLAMKCIYCPIDTRLNFIQVSKLLKEVQP 466

GO:0032039 "integrator complex" evidence=IEA

GO:0016180 "snRNA processing" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9NV88	INT9_HUMAN	No assigned EC number	0.6923	0.4410	0.1762	yes	N/A
Q5ZKK2	INT9_CHICK	No assigned EC number	0.6495	0.4410	0.1762	yes	N/A
Q8K114	INT9_MOUSE	No assigned EC number	0.6923	0.4410	0.1762	yes	N/A
Q2KJA6	INT9_BOVIN	No assigned EC number	0.6837	0.4410	0.1762	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	263
smart01027	126	smart01027, Beta-Casp, Beta-Casp domain	2e-11
pfam10996	124	pfam10996, Beta-Casp, Beta-Casp domain	8e-08

>gnl|CDD|214983 smart01027, Beta-Casp, Beta-Casp domain

 Score = 59.5 bits (145), Expect = 2e-11
 Identities = 14/78 (17%), Positives = 30/78 (38%), Gaps = 6/78 (7%)

Query: 3   QSKVYLPEEPFPHAHLVKTGRLKHFKSIHDDAFNAEFRQPCIVFCGHPSLRFGDSVHFVQ 62
           + +      PF   +L     L+  K +       +++ P ++      L  G S H+++
Sbjct: 48  RKRFEQGRNPFDFKNLKFVKSLEESKRL------NDYKGPKVIIASSGMLTGGRSRHYLK 101

Query: 63  LWGSNPLHTIIFTEPDFP 80
               +P +T+I T     
Sbjct: 102 RLAPDPRNTVILTGYQAE 119

The beta-CASP domain is found C terminal to the beta-lactamase domain in pre-mRNA 3'-end-processing endonuclease. The active site of this enzyme is located at the interface of these two domains. Length = 126

>gnl|CDD|220932 pfam10996, Beta-Casp, Beta-Casp domain

 Score = 49.5 bits (119), Expect = 8e-08
 Identities = 14/71 (19%), Positives = 27/71 (38%), Gaps = 8/71 (11%)

Query: 10  EEPFPHAHLVKTGRLKHFKSIHDDAFNAEFRQPCIVFCGHPSLRFGDSVHFVQLWGSNPL 69
             PF +        LK  +S+ +         P ++      L  G S+H+++    +P 
Sbjct: 55  AFPFDN--------LKFVRSVDESKELNNLGGPKVIIASSGMLEGGRSLHYLKKLAPDPK 106

Query: 70  HTIIFTEPDFP 80
           +T+I T     
Sbjct: 107 NTVILTGYQAE 117

The beta-CASP domain is found C terminal to the beta-lactamase domain in pre-mRNA 3'-end-processing endonuclease. The active site of this enzyme is located at the interface of these two domains. Length = 124

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	263
KOG1138|consensus	653		100.0
KOG1138|consensus	653		99.63
PF10996	126	Beta-Casp: Beta-Casp domain; InterPro: IPR022712 T	98.47
TIGR03675	630	arCOG00543 arCOG00543 universal archaeal KH-domain	98.02
KOG1137|consensus	668		97.75
KOG1136|consensus	501		97.07
COG1782	637	Predicted metal-dependent RNase, consists of a met	94.76

>KOG1138|consensus

Probab=100.00  E-value=4.7e-62  Score=473.32  Aligned_cols=205  Identities=48%  Similarity=0.823  Sum_probs=198.3

Q ss_pred             CccccccCCCCCCchHHHHHhCceeeecccCchhhhhhccCceEEecCCCcccccchHHHHHHhcCCCCceEEeeCCCCC
Q psy9120           1 CKQSKVYLPEEPFPHAHLVKTGRLKHFKSIHDDAFNAEFRQPCIVFCGHPSLRFGDSVHFVQLWGSNPLHTIIFTEPDFP   80 (263)
Q Consensus         1 sKQ~kvy~PE~PF~H~~Lik~~rL~~f~si~~~~f~~~f~~PCVvFa~hpSLR~G~avhlle~w~~~~~n~iIliep~~~   80 (263)
                      |||+|||+||+||+|+.||++|||++|.++++. ||++||+|||||+|||||||||+|||+|.||.+|+|++|++||||+
T Consensus       351 akqnkvylpe~p~~hs~lI~~~rlkiy~sl~g~-fSndfrqpcvvf~~H~SlRfgdv~h~~e~~g~sp~NsvI~tdpD~~  429 (653)
T KOG1138|consen  351 AKQNKVYLPEAPFPHSTLITINRLKIYLSLLGL-FSNDFRQPCVVFMGHPSLRFGDVVHFLECWGLSPKNSVIFTDPDFS  429 (653)
T ss_pred             hhccceeccCCCCCCceEEeecceeehHHHHHH-HhhhcccceeEecCCcchhhhHHHHHHHHhcCCCCCceEEeCCCCc
Confidence            699999999999999999999999999999998 9999999999999999999999999999999999999999999999


Q ss_pred             hhhhcCCCcccceeEEEecccCCCChhhHHHHHhhcCCCeeecccccCCcccCCCceecccceeecCCCCchhHHHHhhh
Q psy9120          81 YVEALAPFQPLAMKSIHCPIDTSLNFNQANKLIRELKPSTLWSRRYLPRWCSGQGATYLGGVVVKALPPRPMDQQALKNA  160 (263)
Q Consensus        81 ~~~~l~PF~pl~mkv~~~Pid~rl~~~~~~~Ll~~l~P~~li~~~~~P~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~  160 (263)
                      +.++|+||||++||+++||||+||||+|+++|++++||++++    ||+                               
T Consensus       430 ~~~vl~PfrpLamK~i~cpidtrlnfqql~kLlkelqPk~vl----cpe-------------------------------  474 (653)
T KOG1138|consen  430 YLLVLAPFRPLAMKIIYCPIDTRLNFQQLPKLLKELQPKIVL----CPE-------------------------------  474 (653)
T ss_pred             hhhhhcCCccccceeEeccccccccHHHHHHHHHHhCCCEEE----Chh-------------------------------
Confidence            999999999999999999999999999999999999999999    999                               


Q ss_pred             hhhhhcccccCCCCCCchhhhhccceeeeeeecCCccccceeeeecCceEeecCccceeeeecCHHHHhhCcccccCCC-
Q psy9120         161 NVLLLSGLTQTPTSNPDAMLGELCMTVVGTLRANGKVDRKVLTLKRGEVLKIPLKRKRTRVNMSAEIAEAVEPCELRPG-  239 (263)
Q Consensus       161 ~~~~~~~ytq~~~~~p~~~l~~l~~~~~~t~~~~g~~~~p~~~~~~~~~l~ip~~r~~~~v~l~~eLA~~l~p~~~~~g-  239 (263)
                            +|||+...+|+.+++-+.             -.|+.+++.+|++++|++||+++|++++|||+.|.|+|+++| 
T Consensus       475 ------aytqp~~~ap~~~i~~~d-------------~~pi~t~~c~ei~~lp~Krkl~~veItpela~kLs~ke~~~~~  535 (653)
T KOG1138|consen  475 ------AYTQPIPLAPIKTISILD-------------YFPIKTLHCPEIVDLPNKRKLVSVEITPELASKLSPKELRQGE  535 (653)
T ss_pred             ------hhcCCCCccchheehhcc-------------ccccceeehhHHhcCccccceeEEEEcHHHHhhCChhhccCce
Confidence                  899999999997776222             467889999999999999999999999999999999999999 


Q ss_pred             ceEEEEEEEEEEECCeEEEec
Q psy9120         240 LAIASIKGNLKVKDNQYCIDM  260 (263)
Q Consensus       240 v~vA~l~g~L~~~d~~~~L~~  260 (263)
                      +++|+++|+|+++||+|+|+|
T Consensus       536 ~~iAtl~~~L~~~d~kh~Lvp  556 (653)
T KOG1138|consen  536 FGIATLKGVLLMKDGKHRLVP  556 (653)
T ss_pred             eEEEEEEEEEEEecCceeeee
Confidence            999999999999999999998

>KOG1138|consensus

Probab=99.63  E-value=1.4e-17  Score=163.63  Aligned_cols=157  Identities=25%  Similarity=0.376  Sum_probs=125.0

Q ss_pred             EEecCCCcccccchH-----HHHHHhcCCC------Cc--eEEeeCCCCChhhh--cCCCcccc------eeEEEecccC
Q psy9120          44 IVFCGHPSLRFGDSV-----HFVQLWGSNP------LH--TIIFTEPDFPYVEA--LAPFQPLA------MKSIHCPIDT  102 (263)
Q Consensus        44 VvFa~hpSLR~G~av-----hlle~w~~~~------~n--~iIliep~~~~~~~--l~PF~pl~------mkv~~~Pid~  102 (263)
                      =|+++.|.+++|...     .|+|+..+.+      ++  .-.+-.|.=+...+  -.+++.+.      .||+-..++.
T Consensus       123 kiY~TE~t~qiGrllMEelv~fier~p~~~S~~~Wk~k~~~~~lpsplk~~~~~~~Wr~~ysl~Dv~sclsKVq~v~f~e  202 (653)
T KOG1138|consen  123 KIYATEPTAQIGRLLMEELVSFIERFPKASSAPLWKKKLDSELLPSPLKKAVFLGSWRRLYSLDDVESCLSKVQGVGFAE  202 (653)
T ss_pred             EEEEechHHHHHHHHHHHHHHHHHhccccccchhhhhhhhhhhcCCCchhhccccceeeeeehhHHHHHHHhheecccce
Confidence            478999999999764     4777764322      22  11111111111111  12233331      6899999999


Q ss_pred             CCChhhHHHHHhhcCCCeee-cccc-cCCcccCCCceecccceeecCCCCchhHHHHhhhhhhhhcccccCCCCCCchhh
Q psy9120         103 SLNFNQANKLIRELKPSTLW-SRRY-LPRWCSGQGATYLGGVVVKALPPRPMDQQALKNANVLLLSGLTQTPTSNPDAML  180 (263)
Q Consensus       103 rl~~~~~~~Ll~~l~P~~li-~~~~-~P~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ytq~~~~~p~~~l  180 (263)
                      .|+..++-.+-. ++.++.+ |||| +-.  .+++++|||||+.+|||||+|||.+||++|++..++++|+|++||+.|.
T Consensus       203 kidlfga~~vtp-lsSG~~lGSsnW~I~t--~nek~sYvS~Ss~ltth~r~md~a~Lk~~Dvli~T~lsql~tanpd~m~  279 (653)
T KOG1138|consen  203 KIDLFGALIVTP-LSSGYDLGSSNWLINT--PNEKLSYVSGSSFLTTHPRPMDQAGLKETDVLIYTGLSQLPTANPDEMG  279 (653)
T ss_pred             eeeccceEEEEe-ccccccccccceEEec--CCcceEEEecCcccccCCccccccccccccEEEEecccccccCCccchh
Confidence            999999877766 8999999 9999 666  7899999999999999999999999999999999999999999999999


Q ss_pred             hhccceeeeeeecCCccccceee
Q psy9120         181 GELCMTVVGTLRANGKVDRKVLT  203 (263)
Q Consensus       181 ~~l~~~~~~t~~~~g~~~~p~~~  203 (263)
                      +|||+.++.|+|++|+|-.|++|
T Consensus       280 gelc~nvt~~~rn~GsvL~PcyP  302 (653)
T KOG1138|consen  280 GELCKNVTLTGRNHGSVLLPCYP  302 (653)
T ss_pred             hhHHHHHHHHhhcCCceeeeccC
Confidence            99999999999999999999874

>PF10996 Beta-Casp: Beta-Casp domain; InterPro: IPR022712 The beta-CASP domain is found C-terminal to the beta-lactamase domain in pre-mRNA 3'-end-processing endonuclease

Probab=98.47  E-value=2e-07  Score=74.49  Aligned_cols=41  Identities=32%  Similarity=0.442  Sum_probs=37.3

Q ss_pred             ccCceEEecCCCcccccchHHHHHHhcCCCCceEEeeCCCC
Q psy9120          39 FRQPCIVFCGHPSLRFGDSVHFVQLWGSNPLHTIIFTEPDF   79 (263)
Q Consensus        39 f~~PCVvFa~hpSLR~G~avhlle~w~~~~~n~iIliep~~   79 (263)
                      ..+||||||++.+|..|++.+++++|..||+|+|||++..-
T Consensus        78 ~~~p~Vvias~gml~~G~s~~~l~~~~~d~~n~Ii~~gy~~  118 (126)
T PF10996_consen   78 LSGPKVVIASSGMLEGGRSRHYLKRLASDPRNTIIFTGYQA  118 (126)
T ss_dssp             SCSSEEEEESSTTSSSSHHHHHHHHHTTSTTSEEEESSS--
T ss_pred             CCCCeEEEeCCCCCCCCHHHHHHHHHcCCCCCeEEEecCCC
Confidence            46999999999999999999999999999999999997643

The active site of this enzyme is located at the interface of these two domains []. ; PDB: 2YCB_B 2XR1_B 2I7T_A 2I7V_A 2I7X_A 3A4Y_A 3IE2_D 3IE1_B 3IE0_D 2DKF_D ....

>TIGR03675 arCOG00543 arCOG00543 universal archaeal KH-domain/beta-lactamase-domain protein

Probab=98.02  E-value=1.3e-05  Score=81.92  Aligned_cols=82  Identities=16%  Similarity=0.351  Sum_probs=66.4

Q ss_pred             ccCceEEecCCCcccccchHHHHHHhcCCCCceEEeeCCCCChhhhcC--------CC--------c--ccceeEEEec-
Q psy9120          39 FRQPCIVFCGHPSLRFGDSVHFVQLWGSNPLHTIIFTEPDFPYVEALA--------PF--------Q--PLAMKSIHCP-   99 (263)
Q Consensus        39 f~~PCVvFa~hpSLR~G~avhlle~w~~~~~n~iIliep~~~~~~~l~--------PF--------~--pl~mkv~~~P-   99 (263)
                      ..+||||+|++..|..|+++++++.|+.||+|+|||+  +|.....+.        .+        +  +.+|+|..++ 
T Consensus       492 ~~~p~VIiatsGMl~gG~~~~~l~~l~~d~kn~Iifv--Gyqa~gTlGr~l~~g~~~i~i~g~~~~~~i~v~~~V~~~~g  569 (630)
T TIGR03675       492 SDEPAIILATSGMLNGGPVVEYLKLLAPDPRNSLVFV--GYQAEGTLGRRIQSGWREIPLTDEGKTETIKINMEVETVEG  569 (630)
T ss_pred             CCCCEEEEECCCCCCcchHHHHHHHHcCCCCCeEEEe--CCCCCCchHHHHhcCCcEEEecCCCCceEEEEEEEEEEeCC
Confidence            3689999999999999999999999999999999998  666653321        11        1  2357777776 


Q ss_pred             ccCCCChhhHHHHHhhcCC--Ceee
Q psy9120         100 IDTSLNFNQANKLIRELKP--STLW  122 (263)
Q Consensus       100 id~rl~~~~~~~Ll~~l~P--~~li  122 (263)
                      +..=-|..++-..++.++|  +.++
T Consensus       570 fSaHaD~~~L~~~v~~~~p~p~~v~  594 (630)
T TIGR03675       570 FSGHSDRRQLMNYVRRMQPKPEKIL  594 (630)
T ss_pred             ccccCCHHHHHHHHHhcCCCCCEEE
Confidence            8888999999999999976  6676

This family of proteins is universal in the archaea and consistsof an N-terminal type-1 KH-domain (pfam00013) a central beta-lactamase-domain (pfam00753) with a C-terminal motif associated with RNA metabolism (pfam07521). KH-domains are associated with RNA-binding, so taken together, this protein is a likely metal-dependent RNAase. This family was defined in as arCOG01782.

>KOG1137|consensus

Probab=97.75  E-value=0.00019  Score=72.59  Aligned_cols=81  Identities=20%  Similarity=0.376  Sum_probs=68.8

Q ss_pred             cCceEEecCCCcccccchHHHHHHhcCCCCceEEeeCCCCChhhhc---------------CCCcccceeEEEecccCCC
Q psy9120          40 RQPCIVFCGHPSLRFGDSVHFVQLWGSNPLHTIIFTEPDFPYVEAL---------------APFQPLAMKSIHCPIDTSL  104 (263)
Q Consensus        40 ~~PCVvFa~hpSLR~G~avhlle~w~~~~~n~iIliep~~~~~~~l---------------~PF~pl~mkv~~~Pid~rl  104 (263)
                      -.|||+-|+.--|+-|=+-.++|+|..|++|++|+  |+|.-+..+               .+=-|++|.|.++.|..-+
T Consensus       322 ~gP~vv~aspgmlqsglSRelfe~wcsD~kN~vli--pGy~Vegtlak~il~eP~eI~a~~G~klp~~m~V~~isFaAhv  399 (668)
T KOG1137|consen  322 EGPSVVMASPGMLQSGLSRELFERWCSDSKNAVLI--PGYCVEGTLAKDILSEPKEIMAMNGRKLPLRMQVEYISFAAHV  399 (668)
T ss_pred             cCCceeEeCchHhhhhhhHHHHHHhCCCCCCcEEe--ccceechhHHHHHhcCchhhhcccCCcccccceEEEEEeeech
Confidence            58999999987899999999999999999998874  455443222               2233568999999999999


Q ss_pred             ChhhHHHHHhhcCCCeee
Q psy9120         105 NFNQANKLIRELKPSTLW  122 (263)
Q Consensus       105 ~~~~~~~Ll~~l~P~~li  122 (263)
                      ++.|-.+.+++++|.++|
T Consensus       400 dy~q~s~fi~~i~~~~li  417 (668)
T KOG1137|consen  400 DYLQNSEFIADITPPHLI  417 (668)
T ss_pred             hhhhhHHHHHHhCCCeEE
Confidence            999999999999999999

>KOG1136|consensus

Probab=97.07  E-value=0.0049  Score=59.95  Aligned_cols=140  Identities=18%  Similarity=0.285  Sum_probs=102.3

Q ss_pred             cCceEEecCCCcccccchHHHHHHhcCCCCceEEeeCCCCChhh-----hc------CCCc---ccceeEEEecccCCCC
Q psy9120          40 RQPCIVFCGHPSLRFGDSVHFVQLWGSNPLHTIIFTEPDFPYVE-----AL------APFQ---PLAMKSIHCPIDTSLN  105 (263)
Q Consensus        40 ~~PCVvFa~hpSLR~G~avhlle~w~~~~~n~iIliep~~~~~~-----~l------~PF~---pl~mkv~~~Pid~rl~  105 (263)
                      ..|||+||+---|.-|-++..++.|..||+|.+|+  |+|.-.-     ++      .=++   ..+++|-+..+..--|
T Consensus       316 pGp~VlFatPGMLhaG~SLkvFK~W~~~~~Nlvim--PGYcV~GTvG~kvl~G~~kvei~~~~~eirl~V~~maFSaHaD  393 (501)
T KOG1136|consen  316 PGPMVLFATPGMLHAGFSLKVFKKWCPDPLNLVIM--PGYCVAGTVGHKVLNGATKVEIYGTKVEIRLKVEYMAFSAHAD  393 (501)
T ss_pred             CCCEEEEcCCcccccccchHHHHhhCCCccceEee--cCceeccchhhhhhCCccEEEEeeeEEEEEEEEEEeeeccccC
Confidence            68999999955699999999999999999999886  6665421     11      1122   2379999999999999


Q ss_pred             hhhHHHHHhhcCCCeeecccccCCcccCCCceecccceeecCCCCchhHHHHhhhhhhhhcccccCCCCCCchhhhhccc
Q psy9120         106 FNQANKLIRELKPSTLWSRRYLPRWCSGQGATYLGGVVVKALPPRPMDQQALKNANVLLLSGLTQTPTSNPDAMLGELCM  185 (263)
Q Consensus       106 ~~~~~~Ll~~l~P~~li~~~~~P~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ytq~~~~~p~~~l~~l~~  185 (263)
                      -.++-+|++.|+|+++.    +                   +|-+...+.-||..-.                  +|   
T Consensus       394 AkGIm~li~~csPknVm----l-------------------VHGE~~kM~~Lk~ki~------------------~e---  429 (501)
T KOG1136|consen  394 AKGIMQLIKQCSPKNVM----L-------------------VHGEKSKMKFLKEKIE------------------SE---  429 (501)
T ss_pred             chhHHHHHHhcCcceEE----E-------------------EeccchhhHHHHHhhH------------------hh---
Confidence            99999999999999998    2                   3444444444442210                  00   


Q ss_pred             eeeeeeecCCccccceeeeecCceEeecCccceeeeecCHHHHhhCcccccC
Q psy9120         186 TVVGTLRANGKVDRKVLTLKRGEVLKIPLKRKRTRVNMSAEIAEAVEPCELR  237 (263)
Q Consensus       186 ~~~~t~~~~g~~~~p~~~~~~~~~l~ip~~r~~~~v~l~~eLA~~l~p~~~~  237 (263)
                             .    +.|++-=-.||++.|+. +-+.++++..|...++.--+++
T Consensus       430 -------~----~ip~~mPaNGetv~i~s-~~~i~~ri~~~~~~~~~k~~~k  469 (501)
T KOG1136|consen  430 -------F----DIPTFMPANGETVVISS-TTYIKARIPDEFLVSLSKPNLK  469 (501)
T ss_pred             -------c----CCceeeCCCCCEEEecc-cceeeecCcHHHHHHhcCcccc
Confidence                   1    55777777889999876 4567888888887776655554

>COG1782 Predicted metal-dependent RNase, consists of a metallo-beta-lactamase domain and an RNA-binding KH domain [General function prediction only]

Probab=94.76  E-value=0.043  Score=55.76  Aligned_cols=109  Identities=19%  Similarity=0.298  Sum_probs=70.2

Q ss_pred             ccCCCCCCchHHHHHhCceeeecccCchhhhhhccCceEEecCCCcccccchHHHHHHhcCCCCceEEeeCCCCChhhhc
Q psy9120           6 VYLPEEPFPHAHLVKTGRLKHFKSIHDDAFNAEFRQPCIVFCGHPSLRFGDSVHFVQLWGSNPLHTIIFTEPDFPYVEAL   85 (263)
Q Consensus         6 vy~PE~PF~H~~Lik~~rL~~f~si~~~~f~~~f~~PCVvFa~hpSLR~G~avhlle~w~~~~~n~iIliep~~~~~~~l   85 (263)
                      .+.++.||.-.      .++..++-+..+-..+=-+||||.+++==|--|+++..++.|+.||+|++||+  +|+++-.|
T Consensus       471 ~~~g~NPF~se------~f~~V~~~~~r~~i~~~~ep~iIlaTSGMlnGGPvveyfk~lA~DprntliFV--gYQAeGTL  542 (637)
T COG1782         471 FHEGENPFLSE------IFKRVEGSDERQEIIESDEPAIILATSGMLNGGPVVEYFKHLAPDPKNTLIFV--GYQAEGTL  542 (637)
T ss_pred             hcCCCCCcccc------ceeecCChhHHHHHhcCCCCeEEEeccccccCCcHHHHHHHhCCCCCceEEEE--EeccCcch
Confidence            34588888752      23333332211111122489999999999999999999999999999999998  45555444


Q ss_pred             C----------CCcc---------cceeEEEec-ccCCCChhhHHHHHhhcCCC--eee
Q psy9120          86 A----------PFQP---------LAMKSIHCP-IDTSLNFNQANKLIRELKPS--TLW  122 (263)
Q Consensus        86 ~----------PF~p---------l~mkv~~~P-id~rl~~~~~~~Ll~~l~P~--~li  122 (263)
                      .          |...         ++|.|.-++ |..--+-.|+-+-+++++|+  .++
T Consensus       543 GRriq~G~kEipi~~~~G~te~i~inMeV~tieGFSGHsdrrqL~~yvr~~~PkP~ki~  601 (637)
T COG1782         543 GRRIQSGAKEIPIPGEDGKTEVIKVNMEVETIEGFSGHSDRRQLMKYVRRMNPKPEKIL  601 (637)
T ss_pred             hhhhhcCceecccccCCCCeEEEEEEEEEEEecCcCCCccHHHHHHHHHhcCCCCceeE
Confidence            1          2111         134444432 33346677888888888865  555

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	263
2i7x_A	717	Protein CFT2; polyadenylation, metallo-B-lactamase	6e-09

>2i7x_A Protein CFT2; polyadenylation, metallo-B-lactamase, PRE-mRNA processing, artemis, V(D)J recombination, double-strand break repair; 2.50A {Saccharomyces cerevisiae} SCOP: d.157.1.10 Length = 717

 Score = 55.2 bits (132), Expect = 6e-09
 Identities = 10/72 (13%), Positives = 22/72 (30%), Gaps = 3/72 (4%)

Query: 23  RLKHFKSIHDDAFNAEFRQPCIVFCGHPSLRFGDSVHFVQLWGSNPLHTIIFTEPDFPYV 82
            +     I      +++    I F              +   G++   T+I T+P F   
Sbjct: 318 EIGSRIKIIAPNELSKYPGSKICFVSEVG---ALINEVIIKVGNSEKTTLILTKPSFECA 374

Query: 83  EALAPFQPLAMK 94
            +L     +  +
Sbjct: 375 SSLDKILEIVEQ 386

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	263
3iek_A	431	Ribonuclease TTHA0252; metallo beta lactamase fold	98.57
2i7t_A	459	Cleavage and polyadenylation specificity factor 73	98.43
2xr1_A	640	Cleavage and polyadenylation specificity factor 1	97.51
3af5_A	651	Putative uncharacterized protein PH1404; archaeal	97.45
2ycb_A	636	Beta-CAsp RNAse, cleavage and polyadenylation spec	97.39
2i7x_A	717	Protein CFT2; polyadenylation, metallo-B-lactamase	95.51

>3iek_A Ribonuclease TTHA0252; metallo beta lactamase fold, endonuclease, hydrolase, metal- nuclease, RNA-binding, rRNA processing; HET: FLC; 2.05A {Thermus thermophilus} SCOP: d.157.1.10 PDB: 2dkf_A* 3iel_A* 3iem_A* 2zdf_A* 3idz_A* 2zdd_A* 3ie0_A* 2zde_A* 3ie1_A* 2zdw_A* 3a4y_A* 2yvd_A* 3ie2_A*

Probab=98.57  E-value=1.2e-07  Score=89.77  Aligned_cols=107  Identities=16%  Similarity=0.179  Sum_probs=80.0

Q ss_pred             cccccCCCCCCchHHHHHhCceeeecccCchhhhhhccCceEEecCCCcccccchHHHHHHhcCCCCceEEeeCCCCChh
Q psy9120           3 QSKVYLPEEPFPHAHLVKTGRLKHFKSIHDDAFNAEFRQPCIVFCGHPSLRFGDSVHFVQLWGSNPLHTIIFTEPDFPYV   82 (263)
Q Consensus         3 Q~kvy~PE~PF~H~~Lik~~rL~~f~si~~~~f~~~f~~PCVvFa~hpSLR~G~avhlle~w~~~~~n~iIliep~~~~~   82 (263)
                      |+.+..++.||.+.      .|+...+..........++||||||++.+|+.|+++|.++.|..||+|+|||+.  |...
T Consensus       273 ~~~~~~~~~pf~~~------~~~~~~~~~~~~~~~~~~~p~viia~~gm~~~G~~~~~l~~~~~~~~n~ii~~g--yq~~  344 (431)
T 3iek_A          273 QAHFLQGKNPFRPA------GLEVVEHTEASKALNRAPGPMVVLAGSGMLAGGRILHHLKHGLSDPRNALVFVG--YQPQ  344 (431)
T ss_dssp             HHHHHTTSCTTCCT------TEEECCSHHHHHHHHHSCSSEEEEESCTTSSSSHHHHHHHHHTTCTTCEEEECS--CCCT
T ss_pred             HHHHhcCCCCCCCC------CeEEeCCHHHHHHHhcCCCCeEEEecCCCCCCChHHHHHHHhcCCCCCeEEEEC--CCCC
Confidence            34566778898663      355555543222234568999999999999999999999999999999999984  5543


Q ss_pred             hhc--------------CCCcccceeEEEe-cccCCCChhhHHHHHhhcC
Q psy9120          83 EAL--------------APFQPLAMKSIHC-PIDTSLNFNQANKLIRELK  117 (263)
Q Consensus        83 ~~l--------------~PF~pl~mkv~~~-Pid~rl~~~~~~~Ll~~l~  117 (263)
                      ..+              .=..+++|+|.++ .+..--|..++-..++.++
T Consensus       345 gt~g~~l~~~~~~v~~~g~~~~v~a~v~~~~~~saHad~~~l~~~~~~~~  394 (431)
T 3iek_A          345 GGLGAEIIARPPAVRILGEEVPLRASVHTLGGFSGHAGQDELLDWLQGEP  394 (431)
T ss_dssp             TSHHHHHHTCCSEEEETTEEEECCSEEEECGGGCSSCCHHHHHHHHTTCS
T ss_pred             CChHHHhhcCCcEEEECCEEEEEEEEEEEECCccccCCHHHHHHHHHhCC
Confidence            322              1112357999999 5999999999999998665

>2i7t_A Cleavage and polyadenylation specificity factor 73 kDa subunit; metallo-B-lactamase, PRE-mRNA processing, artemis, V(D)J recombination; 2.10A {Homo sapiens} SCOP: d.157.1.10 PDB: 2i7v_A

Probab=98.43  E-value=3.5e-07  Score=86.58  Aligned_cols=81  Identities=20%  Similarity=0.344  Sum_probs=70.1

Q ss_pred             cCceEEecCCCcccccchHHHHHHhcCCCCceEEeeCCCCChhhhc---------------CCCcccceeEEEecccCCC
Q psy9120          40 RQPCIVFCGHPSLRFGDSVHFVQLWGSNPLHTIIFTEPDFPYVEAL---------------APFQPLAMKSIHCPIDTSL  104 (263)
Q Consensus        40 ~~PCVvFa~hpSLR~G~avhlle~w~~~~~n~iIliep~~~~~~~l---------------~PF~pl~mkv~~~Pid~rl  104 (263)
                      .+||||+|++..|+.|+++|++++|..||+|+||++  +|.....+               .-..++++++..++++.--
T Consensus       320 ~~~~viia~~gm~~~g~~~~~l~~~~~~~~~~ii~~--gy~~~gt~g~~l~~~~~~~~~~~g~~~~~~~~v~~~~~S~Ha  397 (459)
T 2i7t_A          320 IGPSVVMASPGMMQSGLSRELFESWCTDKRNGVIIA--GYCVEGTLAKHIMSEPEEITTMSGQKLPLKMSVDYISFSAHT  397 (459)
T ss_dssp             CSSEEEEESCTTCSSHHHHHHHHHHTTCTTCEEEEC--SCCCTTSHHHHHTTCCSEEECTTSCEEECCSEEEECCCSCCC
T ss_pred             CCCeEEEEcCcccCCCHHHHHHHHHcCCCCCeEEEE--ecCCCCChHHHHhhCCceeeeeCCcEEEEEEEEEEeeecccC
Confidence            689999999999999999999999999999999995  56554332               1122458999999999999


Q ss_pred             ChhhHHHHHhhcCCCeee
Q psy9120         105 NFNQANKLIRELKPSTLW  122 (263)
Q Consensus       105 ~~~~~~~Ll~~l~P~~li  122 (263)
                      |..++.++++.++|++++
T Consensus       398 d~~~l~~~i~~~~p~~v~  415 (459)
T 2i7t_A          398 DYQQTSEFIRALKPPHVI  415 (459)
T ss_dssp             CHHHHHHHHHHHCCSEEE
T ss_pred             CHHHHHHHHHhcCCCeEE
Confidence            999999999999999988

>2xr1_A Cleavage and polyadenylation specificity factor 1 subunit; hydrolase, metallo-beta-lactamase, beta-CAsp, RNA processing; 2.59A {Methanosarcina mazei}

Probab=97.51  E-value=0.00017  Score=71.89  Aligned_cols=83  Identities=12%  Similarity=0.321  Sum_probs=64.7

Q ss_pred             cCceEEecCCCcccccchHHHHHHhcCCCCceEEeeCCCCChh------hh---cCC--------CcccceeEEEec-cc
Q psy9120          40 RQPCIVFCGHPSLRFGDSVHFVQLWGSNPLHTIIFTEPDFPYV------EA---LAP--------FQPLAMKSIHCP-ID  101 (263)
Q Consensus        40 ~~PCVvFa~hpSLR~G~avhlle~w~~~~~n~iIliep~~~~~------~~---l~P--------F~pl~mkv~~~P-id  101 (263)
                      .+||||+|++..|.-|++.+.|++|..+++|+|||+--..+-.      +.   +.-        -.+..+++..+. +.
T Consensus       502 ~~~~vIiat~gm~~gg~~~~~l~~~~~~~~~~vi~sg~~~~gt~gr~l~~g~~~i~~~~~~G~~~~v~v~~~v~~i~g~S  581 (640)
T 2xr1_A          502 PQPCVILATSGMMNGGPVMEYFKAFAEDPRNTLVFVGYQADGTIGRRIQKGWKEIPMTGKNGSTEMLKMNMEVQVVDGFS  581 (640)
T ss_dssp             -CCCEEEESCTTSSSSHHHHHHHHHSSCTTCEEEECSCCCTTCHHHHHHTTCCC-----------CCCCCSEEEECCCCS
T ss_pred             CCCeEEEeCCCccCCChHHHHHHHhhCCCCCEEEEecCCCCCCHHHHHhhccceeeeeccCCCceEEeeeEEEEEEcccc
Confidence            7899999999999999999999999999999999974333221      00   110        112456777887 88


Q ss_pred             CCCChhhHHHHHhhcC--CCeee
Q psy9120         102 TSLNFNQANKLIRELK--PSTLW  122 (263)
Q Consensus       102 ~rl~~~~~~~Ll~~l~--P~~li  122 (263)
                      .--+..++..+++.++  |++++
T Consensus       582 gHad~~eL~~~i~~~~~~P~~vi  604 (640)
T 2xr1_A          582 GHSDRRQLMEYVKRMQPRPERVF  604 (640)
T ss_dssp             CSCCHHHHHHHHHTCBSCCSEEE
T ss_pred             ccCCHHHHHHHHHHhccCCCEEE
Confidence            8899999999999999  99888

>3af5_A Putative uncharacterized protein PH1404; archaeal CPSF, beta-CAsp family, KH domain, ribonuclease, ME beta-lactamase superfamily, archaea; 2.60A {Pyrococcus horikoshii} PDB: 3af6_A*

Probab=97.45  E-value=0.00042  Score=69.04  Aligned_cols=83  Identities=14%  Similarity=0.244  Sum_probs=64.7

Q ss_pred             cCceEEecCCCcccccchHHHHHHhcCCCCceEEeeCCCCChh------hhc------CCCc-----ccceeEEEec-cc
Q psy9120          40 RQPCIVFCGHPSLRFGDSVHFVQLWGSNPLHTIIFTEPDFPYV------EAL------APFQ-----PLAMKSIHCP-ID  101 (263)
Q Consensus        40 ~~PCVvFa~hpSLR~G~avhlle~w~~~~~n~iIliep~~~~~------~~l------~PF~-----pl~mkv~~~P-id  101 (263)
                      .+||||+|++..|.-|++++.+++|..+++|+||++--..+-.      +..      ....     +..+++..+. +.
T Consensus       513 ~~~~vIia~~gm~~gg~~~~~l~~~~~~~~~~vi~sg~~~~gt~gr~l~~g~~~i~~~~~~G~~~~v~v~~~v~~i~g~S  592 (651)
T 3af5_A          513 NEPAIIIASSGMLVGGPSVEYFKQLAPDPKNSIIFVSYQAEGTLGRQVQSGIREIPMVGEEGRTEVIKVNMEVHTIDGFS  592 (651)
T ss_dssp             CSCEEEEESCTTSSSSHHHHHHHHHTTCTTCEEEECSCCCTTCHHHHHHHTCSEEEEECGGGCEEEEECCSEEEECGGGC
T ss_pred             CCCEEEEECCCCCCCCHHHHHHHHHhCCCCCEEEEeCCCCCCcHHHHHHhccceeeehhcCCCceEEEeEEEEEEcCccc
Confidence            7899999999999999999999999999999999963222211      000      0011     1456677777 88


Q ss_pred             CCCChhhHHHHHhhcC--CCeee
Q psy9120         102 TSLNFNQANKLIRELK--PSTLW  122 (263)
Q Consensus       102 ~rl~~~~~~~Ll~~l~--P~~li  122 (263)
                      .--+..++..+++.++  |++++
T Consensus       593 gHad~~eL~~~i~~~~~~P~~vi  615 (651)
T 3af5_A          593 GHADRRELMNYVAKVRPRPERII  615 (651)
T ss_dssp             SSCCHHHHHHHHHHCBSCCSEEE
T ss_pred             CcCCHHHHHHHHHHhhcCCCEEE
Confidence            8899999999999999  99888

>2ycb_A Beta-CAsp RNAse, cleavage and polyadenylation specificity factor; hydrolase, KH, metallo-beta-lactamase; 3.10A {Methanothermobacter thermautotrophicusorganism_taxid}

Probab=97.39  E-value=0.00034  Score=69.44  Aligned_cols=83  Identities=12%  Similarity=0.207  Sum_probs=66.5

Q ss_pred             cCceEEecCCCcccccchHHHHHHhcCCCCceEEeeCCCCChh------hh------cCCCc-----ccceeEEEec-cc
Q psy9120          40 RQPCIVFCGHPSLRFGDSVHFVQLWGSNPLHTIIFTEPDFPYV------EA------LAPFQ-----PLAMKSIHCP-ID  101 (263)
Q Consensus        40 ~~PCVvFa~hpSLR~G~avhlle~w~~~~~n~iIliep~~~~~------~~------l~PF~-----pl~mkv~~~P-id  101 (263)
                      .+||||+|++..|.-|++.++|++|..+++|+||++....+-.      +.      +..+.     +..+++..++ +.
T Consensus       498 ~~~~vIiat~gm~~gg~~~~~l~~~~~~~~~~vi~sg~~~~Gt~gr~l~~g~~~i~~~~~~G~~~~v~v~~~v~~i~~~S  577 (636)
T 2ycb_A          498 GEPSIILSTSGMLTGGNSLEYFKWLCEDPDNSLVFVGYQAEGSLGRRIQKGWKEIPLKDEDDKMRVYNVRMNIKTIEGFS  577 (636)
T ss_dssp             SSSCEEEESCSSSSSHHHHHHHHHHTTCTTSEEEECSCCCSSSHHHHHHTTCCEEEEECSSSCEEEEECCSEEEECCSCC
T ss_pred             CCCEEEEecCCccCCChHHHHHHHHhCCCCCEEEEecCCCCCCHHHHhhcCCceeeeeccCCceeEEEeEEEEEEECCcc
Confidence            6899999999999999999999999999999999985544332      01      10111     2456777787 88


Q ss_pred             CCCChhhHHHHHhhcC--CCeee
Q psy9120         102 TSLNFNQANKLIRELK--PSTLW  122 (263)
Q Consensus       102 ~rl~~~~~~~Ll~~l~--P~~li  122 (263)
                      .--+..++..+++.++  |++++
T Consensus       578 gHad~~eL~~~i~~~~~~Pk~vi  600 (636)
T 2ycb_A          578 GHSDRRQLMEYVKRISPKPEKIL  600 (636)
T ss_dssp             SSCCHHHHHHHHHSCSSCCSEEE
T ss_pred             eeCCHHHHHHHHHHhccCCCEEE
Confidence            8899999999999999  99888

>2i7x_A Protein CFT2; polyadenylation, metallo-B-lactamase, PRE-mRNA processing, artemis, V(D)J recombination, double-strand break repair; 2.50A {Saccharomyces cerevisiae} SCOP: d.157.1.10

Probab=95.51  E-value=0.012  Score=59.55  Aligned_cols=41  Identities=20%  Similarity=0.264  Sum_probs=36.3

Q ss_pred             hhccCceEEecCCCcccccchHHHHHHhcCCCCceEEeeCCCCC
Q psy9120          37 AEFRQPCIVFCGHPSLRFGDSVHFVQLWGSNPLHTIIFTEPDFP   80 (263)
Q Consensus        37 ~~f~~PCVvFa~hpSLR~G~avhlle~w~~~~~n~iIliep~~~   80 (263)
                      ..+..||||+|++   .-|++.|.|++|+.+|+|+|||+....+
T Consensus       332 ~~~~~p~VI~aSG---~gG~~~~~L~~~a~~~~n~VIf~g~~~p  372 (717)
T 2i7x_A          332 SKYPGSKICFVSE---VGALINEVIIKVGNSEKTTLILTKPSFE  372 (717)
T ss_dssp             GGCCSCEEEEEES---CHHHHHHHHHHHSSCTTEEEEECSSCCT
T ss_pred             hhCCCCEEEEECC---CCHHHHHHHHHHcCCCcCEEEEEcCCCC
Confidence            4467899999988   6799999999999999999999988773

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	263
d2i7xa1	514	d.157.1.10 (A:1-422,A:626-717) Cleavage factor two	2e-06

>d2i7xa1 d.157.1.10 (A:1-422,A:626-717) Cleavage factor two protein 2, CFT2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 514

class: Alpha and beta proteins (a+b)
fold: Metallo-hydrolase/oxidoreductase
superfamily: Metallo-hydrolase/oxidoreductase
family: beta-CASP RNA-metabolising hydrolases
domain: Cleavage factor two protein 2, CFT2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.0 bits (108), Expect = 2e-06
 Identities = 10/74 (13%), Positives = 23/74 (31%), Gaps = 3/74 (4%)

Query: 13  FPHAHLVKTGRLKHFKSIHDDAFNAEFRQPCIVFCGHPSLRFGDSVHFVQLWGSNPLHTI 72
           + + +      +     I      +++    I F              +   G++   T+
Sbjct: 308 WENRNNTSPFEIGSRIKIIAPNELSKYPGSKICFVSEVG---ALINEVIIKVGNSEKTTL 364

Query: 73  IFTEPDFPYVEALA 86
           I T+P F    +L 
Sbjct: 365 ILTKPSFECASSLD 378

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	263
d2i7xa1	514	Cleavage factor two protein 2, CFT2 {Baker's yeast	98.43
d2i7ta1	451	Cleavage and polyadenylation specificity factor su	97.56
d2dkfa1	431	Putative RNA-degradation protein TTHA0252 {Thermus	91.92

>d2i7xa1 d.157.1.10 (A:1-422,A:626-717) Cleavage factor two protein 2, CFT2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Metallo-hydrolase/oxidoreductase
superfamily: Metallo-hydrolase/oxidoreductase
family: beta-CASP RNA-metabolising hydrolases
domain: Cleavage factor two protein 2, CFT2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.43  E-value=9.5e-08  Score=90.19  Aligned_cols=88  Identities=15%  Similarity=0.164  Sum_probs=71.0

Q ss_pred             chhhhhhccCceEEecCCCcccccchHHHHHHhcCCCCceEEeeCCCCChhhhcCC----------------C-------
Q psy9120          32 DDAFNAEFRQPCIVFCGHPSLRFGDSVHFVQLWGSNPLHTIIFTEPDFPYVEALAP----------------F-------   88 (263)
Q Consensus        32 ~~~f~~~f~~PCVvFa~hpSLR~G~avhlle~w~~~~~n~iIliep~~~~~~~l~P----------------F-------   88 (263)
                      +.+....+..||||+|+..+   |.+.+++++|.+||+|+||||+|+|.....+..                |       
T Consensus       327 ~~~~l~~~~~p~VIiat~~~---G~~~~~l~~~a~d~~n~Vi~t~~g~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~  403 (514)
T d2i7xa1         327 APNELSKYPGSKICFVSEVG---ALINEVIIKVGNSEKTTLILTKPSFECASSLDKILEIVEQDERNWKTFPEDGKSFLC  403 (514)
T ss_dssp             CGGGGGGCCSCEEEEEESCH---HHHHHHHHHHSSCTTEEEEECSSCCTTCHHHHHHHHHHHTCC--------CCCCEEC
T ss_pred             CHHHHHhccCCcEEEEcCCC---chHHHHHHHHhcCCCCEEEEecCCCcccccHHHHHhhhhhhcccccccccccccccc
Confidence            33356668999999999865   999999999999999999999999987643311                1       


Q ss_pred             ------------------------------------------cccceeEEEecccCCCChhhHHHHHhhcCCCeee
Q psy9120          89 ------------------------------------------QPLAMKSIHCPIDTSLNFNQANKLIRELKPSTLW  122 (263)
Q Consensus        89 ------------------------------------------~pl~mkv~~~Pid~rl~~~~~~~Ll~~l~P~~li  122 (263)
                                                                -++++++-.+-++.--+..++..+++.++|++++
T Consensus       404 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~v~~i~~SgHad~~el~~~~~~~~P~~vv  479 (514)
T d2i7xa1         404 DNYISIDTIKEEPLSKEETNFDNLDYLKIDKTLSKRTISTVNVQLKCSVVILNLQSLVDQRSASIIWPSLKSRKIV  479 (514)
T ss_dssp             CEEEEEEEEEEEESCSCCCCCSCCGGGSCSSCCEEEEEEEEEEEECSEEEECCCCCSCCHHHHHHHGGGSCCSEEE
T ss_pred             CcceeecccccccccccccCcccccccccccccceeecccceEEEEEEEEEEEeeecCCHHHHHHHHHhhCCCEEE
Confidence                                                      0235666777778889999999999999999998

>d2i7ta1 d.157.1.10 (A:9-459) Cleavage and polyadenylation specificity factor subunit 3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Metallo-hydrolase/oxidoreductase
superfamily: Metallo-hydrolase/oxidoreductase
family: beta-CASP RNA-metabolising hydrolases
domain: Cleavage and polyadenylation specificity factor subunit 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.56  E-value=8.7e-05  Score=65.25  Aligned_cols=86  Identities=17%  Similarity=0.231  Sum_probs=70.7

Q ss_pred             hhccCceEEecCCCcccccchHHHHHHhcCCCCceEEeeCCCCChhh----------h---cCCCcccceeEEEecccCC
Q psy9120          37 AEFRQPCIVFCGHPSLRFGDSVHFVQLWGSNPLHTIIFTEPDFPYVE----------A---LAPFQPLAMKSIHCPIDTS  103 (263)
Q Consensus        37 ~~f~~PCVvFa~hpSLR~G~avhlle~w~~~~~n~iIliep~~~~~~----------~---l~PF~pl~mkv~~~Pid~r  103 (263)
                      ..-..||||++++..+..|.+..+++.|..+++++++++........          .   ..-..++.+++.++|+..=
T Consensus       309 ~~~~~~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~SgH  388 (451)
T d2i7ta1         309 FDDIGPSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVEGTLAKHIMSEPEEITTMSGQKLPLKMSVDYISFSAH  388 (451)
T ss_dssp             SCCCSSEEEEESCTTCSSHHHHHHHHHHTTCTTCEEEECSCCCTTSHHHHHTTCCSEEECTTSCEEECCSEEEECCCSCC
T ss_pred             ccccCceEEEeCccccccchhhhhhhhhccCCCCEEEeccccccCcHHhhhhcccceeEeecCcEEeeeeEEEEEeecCC
Confidence            34468999999999999999999999999999999999876543221          0   1112235688999999999


Q ss_pred             CChhhHHHHHhhcCCCeee
Q psy9120         104 LNFNQANKLIRELKPSTLW  122 (263)
Q Consensus       104 l~~~~~~~Ll~~l~P~~li  122 (263)
                      .++.++.++++.++|++++
T Consensus       389 ss~~eL~~~i~~i~Pk~vi  407 (451)
T d2i7ta1         389 TDYQQTSEFIRALKPPHVI  407 (451)
T ss_dssp             CCHHHHHHHHHHHCCSEEE
T ss_pred             CCHHHHHHHHHHhCCCEEE
Confidence            9999999999999999988

>d2dkfa1 d.157.1.10 (A:1-431) Putative RNA-degradation protein TTHA0252 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: Metallo-hydrolase/oxidoreductase
superfamily: Metallo-hydrolase/oxidoreductase
family: beta-CASP RNA-metabolising hydrolases
domain: Putative RNA-degradation protein TTHA0252
species: Thermus thermophilus [TaxId: 274]

Probab=91.92  E-value=0.034  Score=49.02  Aligned_cols=40  Identities=23%  Similarity=0.334  Sum_probs=36.4

Q ss_pred             hhhccCceEEecCCCcccccchHHHHHHhcCCCCceEEee
Q psy9120          36 NAEFRQPCIVFCGHPSLRFGDSVHFVQLWGSNPLHTIIFT   75 (263)
Q Consensus        36 ~~~f~~PCVvFa~hpSLR~G~avhlle~w~~~~~n~iIli   75 (263)
                      .....+|||++++..++..|.+...++.|..+++|++|++
T Consensus       300 ~~~~~~~~vii~~~~~~~~~~~~~~~~~~~~~~~n~vi~t  339 (431)
T d2dkfa1         300 LNRAPGPMVVLAGSGMLAGGRILHHLKHGLSDPRNALVFV  339 (431)
T ss_dssp             HHHCCSSEEEEEECTTSSSSTHHHHHHSSSSSTTCEEEES
T ss_pred             HHhCCCCceeeccccccccchHHHHHHHhccCCccceeee
Confidence            3445689999999999999999999999999999999987