Psyllid ID: psy9124

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210---
Protein Sequence
MAKTMSQTNGQNNTKTAVLAMGCFWAPDGLFGTTKGVLRTKVGYSGGTTENPTYRNIPAFTEQEVVVVEYCLDLFEPSGHGKRRRRRDSNSSNMTQTFTYASHPHVHHHDNHDNDTQYTKFQENIEYTVLMPGDLYRKTISMESSCSTFLLVSGVLGGLLFISAFLMCYLASRLQTALATRYHSNNLDHFVREHSRKCSLNDQYQYTGRSTIQ
Secondary Structure (PSIPRED)
ccccccccccccccEEEEEcccccccccccccccccEEEEEcccccccccccccccccccccccEEEEEEEEEcccccccccccccccccHHHHHHHHHHccccccccccccccccccccccHHHHHHHcccHHHHHHHHHHccccccEEEEEccccccHHHHHHHHHHHHHccccccEEEcccccHHHHHHHHHHccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccEccccccccEEEEEEEccHHHHHHHHHccccEEEEEEEEEccccccccHHHHcccEEEEEEEEcEEEEccccccccccccccccccccEEEEEEccccccHHccccccccccEEEEcccEEEEEEccHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHccccccccccccccccc
Coil and Loop (DISEMBL)
maktmsqtngqnnTKTAVLAMGcfwapdglfgttkgvlrtkvgysggttenptyrnipafteQEVVVVEYCLdlfepsghgkrrrrrdsnssnmtqtftyashphvhhhdnhdndtqytKFQEnieytvlmpgdlyrktismesSCSTFLLVSGVLGGLLFISAFLMCYLASRLQTALATRYHSNNLDHFVrehsrkcslndqyqytgrstiq
Flexible Loop (DISEMBL)
maktmsqtngqnNTKTAVLAMGCFWAPDGLFGTTKGVLRTKVGysggttenptyrniPAFTEQEVVVVEYCLDLfepsghgkrrrrrdsnssNMTQTFTYASHPHVHHHDNHDNDTQYTKFQENIEYTVLMPGDLYRKTISMESSCSTFLLVSGVLGGLLFISAFLMCYLASRLQTALATRYHSNNLDHFVrehsrkcslndqyqytgrstiq
Low Complexity Region (SEG)
MAKTMSQTNGQNNTKTAVLAMGCFWAPDGLFGTTKGVLRTKVGYSGGTTENPTYRNIPAFTEQEVVVVEYCLDLFEPSGHGKrrrrrDSNSSNMTQTFTYAShphvhhhdnhdndTQYTKFQENIEYTVLMPGDLYRKTISMESSCSTFllvsgvlggllFISAFLMCYLASRLQTALATRYHSNNLDHFVREHSRKCSLNDQYQYTGRSTIQ
Disordered region (IsUnstruct)
***************TAVLAMGCFWAPDGLFGTTKGVLRTKVGYSGGTTENPTYRNIPAFTEQEVVVVEYCLDLF****************************************TQYTKFQENIEYTVLMPGDLYRKTISMESSCSTFLLVSGVLGGLLFISAFLMCYLASRLQTALATRYHSNNLDHFVREHS**C***************
Disordered Region (DISOPRED)
****************AVLAMGCFWAPDGLFGTTKGVLRTKVGYSGGTTENPTYRNIPAFTEQEVVVVEYCLDLFEPSGHGKRRRRRDSNSSNMTQTFTYASHPHVHHHD**D**TQYTKFQENIEYTVLMPGDLYRKTISMESSCSTFLLVSGVLGGLLFISAFLMCYLASRLQTALATRYHSNNLDHFVREHSRKCSLNDQY***G*S***
Disordered Region (DISEMBL)
***********NNTKTAVLAMGCFWAPDGLFGTTKGVLRTKVGYSGGTTENPTYRNIPAFTEQEVVVVEYCLDLFEP***************NMTQTFTYASHPHVHHHDNHDNDTQYTKFQENIEYTVLMPGDLYRKTISMESSCSTFLLVSGVLGGLLFISAFLMCYLASRLQTALATRYHSNNLDHFVREHSRKCSLNDQYQYTGRSTIQ
Disordered Region (DISPRO)
***********NNTKTAVLAMGCFWAPDGLFGTTKGVLRTKVGYSGGTTENPTYRNIPAFTEQEVVVVEYCLDLFEPSGH********SNSSNMTQTFTYASHPHVHHHDNHDNDTQYTKFQENIEYTVLMPGDLYRKTISMESSCSTFLLVSGVLGGLLFISAFLMCYLASRLQTALAT***SNNLDHFVREHSRKCSLND***********
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAKTMSQTNGQNNTKTAVLAMGCFWAPDGLFGTTKGVLRTKVGYSGGTTENPTYRNIPAFTEQEVVVVEYCLDLFEPSGHGKRRRRRDSNSSNMTQTFTYASHPHVHHHDNHDNDTQYTKFQENIEYTVLMPGDLYRKTISMESSCSTFLLVSGVLGGLLFISAFLMCYLASRLQTALATRYHSNNLDHFVREHSRKCSLNDQYQYTGRSTIQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	213	2.2.26 [Sep-21-2011]
P08761	246	Peptide methionine sulfox	yes	N/A	0.333	0.288	0.443	2e-10
O83641	291	Peptide methionine sulfox	yes	N/A	0.272	0.199	0.5	5e-10
A4FYX5	157	Peptide methionine sulfox	yes	N/A	0.211	0.286	0.555	4e-09
B2TZL3	212	Peptide methionine sulfox	yes	N/A	0.244	0.245	0.480	2e-08
A6VFD6	157	Peptide methionine sulfox	yes	N/A	0.211	0.286	0.533	3e-08
Q9SL43	254	Peptide methionine sulfox	no	N/A	0.253	0.212	0.5	3e-08
Q5YUS0	170	Peptide methionine sulfox	yes	N/A	0.267	0.335	0.456	3e-08
Q31TF9	212	Peptide methionine sulfox	yes	N/A	0.244	0.245	0.480	3e-08
Q0T9G6	212	Peptide methionine sulfox	yes	N/A	0.244	0.245	0.480	4e-08
Q3YUC8	212	Peptide methionine sulfox	yes	N/A	0.244	0.245	0.480	4e-08

>sp|P08761|MSRA_DROME Peptide methionine sulfoxide reductase OS=Drosophila melanogaster GN=Eip71CD PE=2 SV=2

 Score = 65.9 bits (159), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 35/79 (44%), Positives = 47/79 (59%), Gaps = 8/79 (10%)

Query: 5   MSQTNGQNNTK-TAVLAMGCFWAPDGLFGTTKGVLRTKVGYSGGTTENPTYRNIPAFTE- 62
           +S  +  N TK TA   MGCFW  + L+G T+GVLRT VGY+GG+++ PTYR +   TE 
Sbjct: 29  ISPVHDVNVTKATATFGMGCFWGAESLYGATRGVLRTTVGYAGGSSDLPTYRKMGDHTEV 88

Query: 63  ------QEVVVVEYCLDLF 75
                   V+  +  LDLF
Sbjct: 89  LEIDYDPTVISFKELLDLF 107

Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine.
Drosophila melanogaster (taxid: 7227)
EC: 1EC: .EC: 8EC: .EC: 4EC: .EC: 1EC: 1

>sp|O83641|MSRAB_TREPA Peptide methionine sulfoxide reductase MsrB/MsrA OS=Treponema pallidum (strain Nichols) GN=msrAB PE=3 SV=1

 Score = 64.7 bits (156), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 29/58 (50%), Positives = 37/58 (63%)

Query: 16  TAVLAMGCFWAPDGLFGTTKGVLRTKVGYSGGTTENPTYRNIPAFTEQEVVVVEYCLD 73
           TA+ A GCFW+ +  F   KGVLR +VGY+GGTT++PTYRN+   T      VE   D
Sbjct: 128 TALFAAGCFWSTEAYFRRVKGVLRVRVGYTGGTTKSPTYRNVCTGTTGHAEAVEILFD 185

Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine.

Treponema pallidum (strain Nichols) (taxid: 243276)

EC: 1

EC: .

EC: 8

EC: .

EC: 4

EC: .

EC: 1

EC: 1

>sp|A4FYX5|MSRA_METM5 Peptide methionine sulfoxide reductase MsrA OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=msrA PE=3 SV=1

 Score = 61.6 bits (148), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 25/45 (55%), Positives = 33/45 (73%)

Query: 13 NTKTAVLAMGCFWAPDGLFGTTKGVLRTKVGYSGGTTENPTYRNI 57
          NT+TAV  MGCFW+ + LF   KGV+ T+VG+ GGT +NPTY  +
Sbjct: 3  NTETAVFGMGCFWSAEELFRKIKGVISTEVGFMGGTVKNPTYGQV 47

Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine.

Methanococcus maripaludis (strain C5 / ATCC BAA-1333) (taxid: 402880)

EC: 1

EC: .

EC: 8

EC: .

EC: 4

EC: .

EC: 1

EC: 1

>sp|B2TZL3|MSRA_SHIB3 Peptide methionine sulfoxide reductase MsrA OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=msrA PE=3 SV=1

 Score = 58.9 bits (141), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 25/52 (48%), Positives = 31/52 (59%)

Query: 6  SQTNGQNNTKTAVLAMGCFWAPDGLFGTTKGVLRTKVGYSGGTTENPTYRNI 57
          S TN  +  + A+ AMGCFW  + LF    GV  T  GY+GG T NPTYR +
Sbjct: 35 SMTNVPDGMEIAIFAMGCFWGVESLFWQLPGVYSTAAGYTGGYTPNPTYREV 86

Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine.

Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) (taxid: 344609)

EC: 1

EC: .

EC: 8

EC: .

EC: 4

EC: .

EC: 1

EC: 1

>sp|A6VFD6|MSRA_METM7 Peptide methionine sulfoxide reductase MsrA OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=msrA PE=3 SV=1

 Score = 58.9 bits (141), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 24/45 (53%), Positives = 31/45 (68%)

Query: 13 NTKTAVLAMGCFWAPDGLFGTTKGVLRTKVGYSGGTTENPTYRNI 57
          NT+TAV  MGCFW+ + LF    GV+ T+VGY GG  +NPTY  +
Sbjct: 3  NTETAVFGMGCFWSAEELFRHVDGVISTEVGYMGGNVKNPTYGQV 47

Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine.

Methanococcus maripaludis (strain C7 / ATCC BAA-1331) (taxid: 426368)

EC: 1

EC: .

EC: 8

EC: .

EC: 4

EC: .

EC: 1

EC: 1

>sp|Q9SL43|MSRA5_ARATH Peptide methionine sulfoxide reductase A5 OS=Arabidopsis thaliana GN=MSRA5 PE=2 SV=1

 Score = 58.5 bits (140), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 28/56 (50%), Positives = 34/56 (60%), Gaps = 2/56 (3%)

Query: 15  KTAVLAMGCFWAPDGLFGTTKGVLRTKVGYSGGTTENPTYRNIPAFTEQEVVVVEY 70
           K+AV A+G FW  +  FG   GV+RT  GY+GGT  NP YRN+    E   V VEY
Sbjct: 53  KSAVFALGSFWRSEAAFGCINGVVRTSAGYAGGTKTNPEYRNLGDHAES--VQVEY 106

Catalyzes the reduction of methionine sulfoxide (MetSO) to methionine in proteins. Plays a protective role against oxidative stress by restoring activity to proteins that have been inactivated by methionine oxidation. MSRA family specifically reduces the MetSO S-enantiomer.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 8

EC: .

EC: 4

EC: .

EC: 1

EC: 1

>sp|Q5YUS0|MSRA_NOCFA Peptide methionine sulfoxide reductase MsrA OS=Nocardia farcinica (strain IFM 10152) GN=msrA PE=3 SV=1

 Score = 58.5 bits (140), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 26/57 (45%), Positives = 36/57 (63%)

Query: 13 NTKTAVLAMGCFWAPDGLFGTTKGVLRTKVGYSGGTTENPTYRNIPAFTEQEVVVVE 69
          +T+ A+LA GCFW    L     GV+ T+VGY+GGT ++PTYRN P   E   +V +
Sbjct: 3  DTRRAILAGGCFWGMQDLIRRQPGVVSTRVGYTGGTNDHPTYRNHPGHAEAVEIVYD 59

Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine.

Nocardia farcinica (strain IFM 10152) (taxid: 247156)

EC: 1

EC: .

EC: 8

EC: .

EC: 4

EC: .

EC: 1

EC: 1

>sp|Q31TF9|MSRA_SHIBS Peptide methionine sulfoxide reductase MsrA OS=Shigella boydii serotype 4 (strain Sb227) GN=msrA PE=3 SV=1

 Score = 58.5 bits (140), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 25/52 (48%), Positives = 31/52 (59%)

Query: 6  SQTNGQNNTKTAVLAMGCFWAPDGLFGTTKGVLRTKVGYSGGTTENPTYRNI 57
          S TN  +  + A+ AMGCFW  + LF    GV  T  GY+GG T NPTYR +
Sbjct: 35 SMTNEPDGMEIAIFAMGCFWGVERLFWQLPGVYSTAAGYTGGYTPNPTYREV 86

Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine.

Shigella boydii serotype 4 (strain Sb227) (taxid: 300268)

EC: 1

EC: .

EC: 8

EC: .

EC: 4

EC: .

EC: 1

EC: 1

>sp|Q0T9G6|MSRA_ECOL5 Peptide methionine sulfoxide reductase MsrA OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=msrA PE=3 SV=1

 Score = 58.2 bits (139), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 25/52 (48%), Positives = 31/52 (59%)

Query: 6  SQTNGQNNTKTAVLAMGCFWAPDGLFGTTKGVLRTKVGYSGGTTENPTYRNI 57
          S TN  +  + A+ AMGCFW  + LF    GV  T  GY+GG T NPTYR +
Sbjct: 35 SMTNVPDGMEIAIFAMGCFWGVERLFWQLPGVYSTAAGYTGGYTPNPTYREV 86

Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine.

Escherichia coli O6:K15:H31 (strain 536 / UPEC) (taxid: 362663)

EC: 1

EC: .

EC: 8

EC: .

EC: 4

EC: .

EC: 1

EC: 1

>sp|Q3YUC8|MSRA_SHISS Peptide methionine sulfoxide reductase MsrA OS=Shigella sonnei (strain Ss046) GN=msrA PE=3 SV=1

 Score = 58.2 bits (139), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 25/52 (48%), Positives = 31/52 (59%)

Query: 6  SQTNGQNNTKTAVLAMGCFWAPDGLFGTTKGVLRTKVGYSGGTTENPTYRNI 57
          S TN  +  + A+ AMGCFW  + LF    GV  T  GY+GG T NPTYR +
Sbjct: 35 SMTNVPDGMEIAIFAMGCFWGVERLFWQLPGVYSTAAGYTGGYTPNPTYREV 86

Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine.

Shigella sonnei (strain Ss046) (taxid: 300269)

EC: 1

EC: .

EC: 8

EC: .

EC: 4

EC: .

EC: 1

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	213
189235212	427	PREDICTED: similar to AGAP009011-PA [Tri	0.629	0.313	0.513	1e-30
270004083	428	hypothetical protein TcasGA2_TC003396 [T	0.629	0.313	0.513	2e-30
307173395	433	hypothetical protein EAG_15938 [Camponot	0.713	0.351	0.472	5e-29
332020304	423	hypothetical protein G5I_11056 [Acromyrm	0.713	0.359	0.472	2e-28
328779180	432	PREDICTED: hypothetical protein LOC10057	0.704	0.347	0.462	3e-28
380027585	428	PREDICTED: uncharacterized protein LOC10	0.704	0.350	0.462	3e-28
350412512	432	PREDICTED: hypothetical protein LOC10074	0.704	0.347	0.45	1e-27
340725141	432	PREDICTED: hypothetical protein LOC10064	0.704	0.347	0.45	1e-27
307191876	453	hypothetical protein EAI_05215 [Harpegna	0.704	0.331	0.465	3e-27
156553783	448	PREDICTED: hypothetical protein LOC10011	0.708	0.337	0.460	6e-27

>gi|189235212|ref|XP_001809747.1| PREDICTED: similar to AGAP009011-PA [Tribolium castaneum]

 Score =  139 bits (349), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 75/146 (51%), Positives = 98/146 (67%), Gaps = 12/146 (8%)

Query: 69  EYCLDLFEPSGHGKRRRRRDSNSSNMTQTFTYASHPHVHHHDNHDNDTQYTKFQENIEYT 128
           ++CLDLFEPSGHG  R+RRD  +  + +     S         H+   QYTK +EN+EYT
Sbjct: 293 DFCLDLFEPSGHG--RKRRDVEAIEVVEAPELPSD-----LAKHNATIQYTKIKENLEYT 345

Query: 129 VLMPGDLYRKTISMESSCSTFLLVSGVLGGLLFISAFLMCYLASRLQTALATRYHSN-NL 187
           VLMPG+ Y +T +MESSCSTFL V+ +LG LLF+SAF+MC+LASRL +AL    ++N N+
Sbjct: 346 VLMPGEFYHRTAAMESSCSTFLAVAAILGCLLFLSAFVMCWLASRLHSALVGTVNTNKNI 405

Query: 188 DHFVREHSRKCSLNDQYQYTGRSTIQ 213
           D  VRE SR  S   +  YTGR+T Q
Sbjct: 406 DELVRE-SRHYS---ESGYTGRATTQ 427

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270004083|gb|EFA00531.1| hypothetical protein TcasGA2_TC003396 [Tribolium castaneum]

 Score =  138 bits (347), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 75/146 (51%), Positives = 98/146 (67%), Gaps = 12/146 (8%)

Query: 69  EYCLDLFEPSGHGKRRRRRDSNSSNMTQTFTYASHPHVHHHDNHDNDTQYTKFQENIEYT 128
           ++CLDLFEPSGHG  R+RRD  +  + +     S         H+   QYTK +EN+EYT
Sbjct: 294 DFCLDLFEPSGHG--RKRRDVEAIEVVEAPELPSD-----LAKHNATIQYTKIKENLEYT 346

Query: 129 VLMPGDLYRKTISMESSCSTFLLVSGVLGGLLFISAFLMCYLASRLQTALATRYHSN-NL 187
           VLMPG+ Y +T +MESSCSTFL V+ +LG LLF+SAF+MC+LASRL +AL    ++N N+
Sbjct: 347 VLMPGEFYHRTAAMESSCSTFLAVAAILGCLLFLSAFVMCWLASRLHSALVGTVNTNKNI 406

Query: 188 DHFVREHSRKCSLNDQYQYTGRSTIQ 213
           D  VRE SR  S   +  YTGR+T Q
Sbjct: 407 DELVRE-SRHYS---ESGYTGRATTQ 428

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307173395|gb|EFN64354.1| hypothetical protein EAG_15938 [Camponotus floridanus]

 Score =  133 bits (334), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 76/161 (47%), Positives = 97/161 (60%), Gaps = 9/161 (5%)

Query: 56  NIPAFTEQEVVVVEYCLDLFEPSGHGKRRRRRDSNSSNMTQTFTYASHPHVHHHDNHDND 115
            I A  E +    ++CLDLFEPSGHG++++R    S   +  F     P V       ND
Sbjct: 279 QIKACMEPQDCQPDFCLDLFEPSGHGRKKKRAVEASVEASGEFL----PKVERLIKRYND 334

Query: 116 -TQYTKFQENIEYTVLMPGDLYRKTIS-MESSCSTFLLVSGVLGGLLFISAFLMCYLASR 173
            TQYTKF+ENIEYTV+MP DLY K  + +E SC  FL V+  LG LL +SAF+MCYLASR
Sbjct: 335 STQYTKFKENIEYTVMMPDDLYDKVAAGLEGSCGNFLYVATGLGALLVLSAFIMCYLASR 394

Query: 174 LQTALATRYHSNNLDHFVREHSRK-CSLNDQYQYTGRSTIQ 213
           L    +T   S ++D  VR+ +RK C       YTGRST+Q
Sbjct: 395 LHNLSSTMQQSKSIDELVRDRTRKYCDTTP--GYTGRSTMQ 433

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332020304|gb|EGI60735.1| hypothetical protein G5I_11056 [Acromyrmex echinatior]

 Score =  131 bits (329), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 76/161 (47%), Positives = 97/161 (60%), Gaps = 9/161 (5%)

Query: 56  NIPAFTEQEVVVVEYCLDLFEPSGHGKRRRRRDSNSSNMTQTFTYASHPHVHHHDNHDND 115
            I A  E +    ++CLDLFEPSGHGK+R+R    +  +   F     P V       ND
Sbjct: 269 QIKACMEPQDCQPDFCLDLFEPSGHGKKRKRSVEANVEVLGEFL----PKVERLIKRYND 324

Query: 116 -TQYTKFQENIEYTVLMPGDLYRK-TISMESSCSTFLLVSGVLGGLLFISAFLMCYLASR 173
            T YTKF+ENIEYTV+MP DLY K T  +E SC  FL V+  LG LL +SAF+MCYLASR
Sbjct: 325 STPYTKFKENIEYTVMMPDDLYDKVTAGLEGSCGNFLYVATGLGVLLVLSAFIMCYLASR 384

Query: 174 LQTALATRYHSNNLDHFVREHSRK-CSLNDQYQYTGRSTIQ 213
           L    +T   + ++D  VR+ +RK C +     YTGRST+Q
Sbjct: 385 LHNLSSTMQQNKSIDELVRDRTRKYCDITP--GYTGRSTMQ 423

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328779180|ref|XP_003249603.1| PREDICTED: hypothetical protein LOC100576738 [Apis mellifera]

 Score =  130 bits (328), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 74/160 (46%), Positives = 101/160 (63%), Gaps = 10/160 (6%)

Query: 56  NIPAFTEQEVVVVEYCLDLFEPSGHGKRRRRRDSNSSNMTQTFTYASHPHVHHHDNHDND 115
            I A  E +    ++CLDLFEPSGHGK+++R    S+N  + F     P + H     ND
Sbjct: 281 QIKACMEPQDCQPDFCLDLFEPSGHGKKKKRSIEESTN--EIF-----PKIDHLIKEYND 333

Query: 116 -TQYTKFQENIEYTVLMPGDLYRKTIS-MESSCSTFLLVSGVLGGLLFISAFLMCYLASR 173
            T YTKF+ENIEYTV+M  DLY+K  + +E+SC +FL V+  LG LL +SAF+MCYLA+R
Sbjct: 334 STPYTKFKENIEYTVMMSDDLYQKVAAGLENSCGSFLYVATGLGALLVLSAFIMCYLATR 393

Query: 174 LQTALATRYHSNNLDHFVREHSRKCSLNDQYQYTGRSTIQ 213
           L    +T   + ++D  VR+ +RK S      YTGRST+Q
Sbjct: 394 LHNLSSTIPQNKSIDELVRDRARKYS-EPIPGYTGRSTVQ 432

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380027585|ref|XP_003697502.1| PREDICTED: uncharacterized protein LOC100865277 [Apis florea]

 Score =  130 bits (327), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 74/160 (46%), Positives = 101/160 (63%), Gaps = 10/160 (6%)

Query: 56  NIPAFTEQEVVVVEYCLDLFEPSGHGKRRRRRDSNSSNMTQTFTYASHPHVHHHDNHDND 115
            I A  E +    ++CLDLFEPSGHGK+++R    S+N  + F     P + H     ND
Sbjct: 277 QIKACMEPQDCQPDFCLDLFEPSGHGKKKKRSIEESTN--EIF-----PKIDHLIKEYND 329

Query: 116 -TQYTKFQENIEYTVLMPGDLYRKTIS-MESSCSTFLLVSGVLGGLLFISAFLMCYLASR 173
            T YTKF+ENIEYTV+M  DLY+K  + +E+SC +FL V+  LG LL +SAF+MCYLA+R
Sbjct: 330 STPYTKFKENIEYTVMMSDDLYQKVAAGLENSCGSFLYVATGLGALLVLSAFIMCYLATR 389

Query: 174 LQTALATRYHSNNLDHFVREHSRKCSLNDQYQYTGRSTIQ 213
           L    +T   + ++D  VR+ +RK S      YTGRST+Q
Sbjct: 390 LHNLSSTIPQNKSIDELVRDRARKYS-EPIPGYTGRSTVQ 428

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350412512|ref|XP_003489673.1| PREDICTED: hypothetical protein LOC100742426 [Bombus impatiens]

 Score =  128 bits (322), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 72/160 (45%), Positives = 98/160 (61%), Gaps = 10/160 (6%)

Query: 56  NIPAFTEQEVVVVEYCLDLFEPSGHGKRRRRRDSNSSNMTQTFTYASHPHVHHHDNHDND 115
            I A  E +    ++CLDLFEPSGHGK+++R     +N          P V       ND
Sbjct: 281 QIKACMEPQDCQPDFCLDLFEPSGHGKKKKRSIVEGTN-------EYFPKVDRLIKEYND 333

Query: 116 T-QYTKFQENIEYTVLMPGDLYRK-TISMESSCSTFLLVSGVLGGLLFISAFLMCYLASR 173
           +  YTKF+ENIEYTV+MP D+Y+K T  +E+SC +FL V+  LG LL +SAF+MCYLA+R
Sbjct: 334 SIPYTKFKENIEYTVMMPDDIYQKVTAGLENSCGSFLYVATGLGALLVLSAFIMCYLATR 393

Query: 174 LQTALATRYHSNNLDHFVREHSRKCSLNDQYQYTGRSTIQ 213
           L    +T   + ++D  VR+ +RK S      YTGRST+Q
Sbjct: 394 LHNLSSTIPQNKSIDELVRDRARKYS-EQTPGYTGRSTVQ 432

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340725141|ref|XP_003400932.1| PREDICTED: hypothetical protein LOC100645691 [Bombus terrestris]

 Score =  128 bits (322), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 72/160 (45%), Positives = 98/160 (61%), Gaps = 10/160 (6%)

Query: 56  NIPAFTEQEVVVVEYCLDLFEPSGHGKRRRRRDSNSSNMTQTFTYASHPHVHHHDNHDND 115
            I A  E +    ++CLDLFEPSGHGK+++R     +N          P V       ND
Sbjct: 281 QIKACMEPQDCQPDFCLDLFEPSGHGKKKKRSIVEGTN-------EYFPKVDRLIKEYND 333

Query: 116 T-QYTKFQENIEYTVLMPGDLYRK-TISMESSCSTFLLVSGVLGGLLFISAFLMCYLASR 173
           +  YTKF+ENIEYTV+MP D+Y+K T  +E+SC +FL V+  LG LL +SAF+MCYLA+R
Sbjct: 334 SIPYTKFKENIEYTVMMPDDIYQKVTAGLENSCGSFLYVATGLGALLVLSAFIMCYLATR 393

Query: 174 LQTALATRYHSNNLDHFVREHSRKCSLNDQYQYTGRSTIQ 213
           L    +T   + ++D  VR+ +RK S      YTGRST+Q
Sbjct: 394 LHNLSSTIPQNKSIDELVRDRARKYS-EQTPGYTGRSTVQ 432

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307191876|gb|EFN75295.1| hypothetical protein EAI_05215 [Harpegnathos saltator]

 Score =  127 bits (319), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 75/161 (46%), Positives = 97/161 (60%), Gaps = 11/161 (6%)

Query: 56  NIPAFTEQEVVVVEYCLDLFEPSGHGKRRRRRDSNSSNMTQTFTYASHPHVHHHDNHDND 115
            I A  E +    ++CLDLFEPSGHGK+R+R    +  M  +  +   P V       ND
Sbjct: 301 QIKACMEPQDCQPDFCLDLFEPSGHGKKRKR----AVEMEASGEFL--PKVERLIKRYND 354

Query: 116 -TQYTKFQENIEYTVLMPGDLYRKTIS-MESSCSTFLLVSGVLGGLLFISAFLMCYLASR 173
            T YTKF+ENIEYTV+MP DLY K  + +E SC  FL V+  LG LL +SAF+MCYLASR
Sbjct: 355 STPYTKFKENIEYTVMMPDDLYDKVAAGLEGSCGNFLYVATGLGVLLVLSAFIMCYLASR 414

Query: 174 LQTALATRYHSNNLDHFVREHSRK-CSLNDQYQYTGRSTIQ 213
           L    ++   + ++D  VR+ SRK C       YTGRST+Q
Sbjct: 415 LHGLSSSMQQNKSIDELVRDRSRKYCDTTP--GYTGRSTVQ 453

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156553783|ref|XP_001601983.1| PREDICTED: hypothetical protein LOC100117856 [Nasonia vitripennis]

 Score =  126 bits (316), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 75/163 (46%), Positives = 99/163 (60%), Gaps = 12/163 (7%)

Query: 56  NIPAFTEQEVVVVEYCLDLFEPSGHGKRRRRR-DSNSSNMTQTFTYASHPHVHHHDNHDN 114
            I A  E +    ++CLDLFEPSGHGKRR+R  +    N+T+       P V       N
Sbjct: 293 QIKACMEPQDCQPDFCLDLFEPSGHGKRRKRAVEPAQGNVTEY-----SPRVGRLIQRYN 347

Query: 115 D-TQYTKFQENIEYTVLMPGDLY-RKTISMESSCSTFLLVSGVLGGLLFISAFLMCYLAS 172
           D T  TKF+ENIEYTV+MP DLY R   ++E SC  FL V+  LGGLL +SA +MCYLAS
Sbjct: 348 DSTPTTKFKENIEYTVIMPDDLYDRVAANLEGSCGNFLYVAAGLGGLLVLSALMMCYLAS 407

Query: 173 RLQT-ALATRYHSNNLDHFVREHSRK-CSLNDQYQYTGRSTIQ 213
           RL + +++      ++D  VR+ +RK C +     YTGRST+Q
Sbjct: 408 RLHSLSVSLPMQGKSIDDLVRDRARKYCDVAP--GYTGRSTVQ 448

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	213
FB|FBgn0000565	246	Eip71CD "Ecdysone-induced prot	0.300	0.260	0.477	6.4e-12
UNIPROTKB|E2QV17	233	MSRA "Uncharacterized protein"	0.267	0.244	0.491	1.8e-09
TAIR|locus:2060907	254	MSRA5 "AT2G18030" [Arabidopsis	0.253	0.212	0.5	2.1e-09
UNIPROTKB|P0A744	212	msrA "methionine sulfoxide red	0.244	0.245	0.480	3.6e-09
TIGR_CMR|DET_1241	176	DET_1241 "peptide methionine s	0.267	0.323	0.440	9.7e-09
DICTYBASE|DDB_G0276579	147	msrA "peptide methionine sulfo	0.262	0.380	0.474	1.6e-08
UNIPROTKB|E5RJK1	82	MSRA "Mitochondrial peptide me	0.253	0.658	0.464	5.3e-08
UNIPROTKB|P54149	233	MSRA "Mitochondrial peptide me	0.206	0.188	0.522	6.1e-08
UNIPROTKB|E9PJ70	59	MSRA "Mitochondrial peptide me	0.192	0.694	0.512	6.8e-08
UNIPROTKB|E5RIA9	213	MSRA "Mitochondrial peptide me	0.267	0.267	0.457	1.6e-07

FB|FBgn0000565 Eip71CD "Ecdysone-induced protein 28/29kD" [Drosophila melanogaster (taxid:7227)]

 Score = 161 (61.7 bits), Expect = 6.4e-12, P = 6.4e-12
 Identities = 32/67 (47%), Positives = 45/67 (67%)

Query:     5 MSQTNGQNNTK-TAVLAMGCFWAPDGLFGTTKGVLRTKVGYSGGTTENPTYRNIPAFTEQ 63
             +S  +  N TK TA   MGCFW  + L+G T+GVLRT VGY+GG+++ PTYR +   TE 
Sbjct:    29 ISPVHDVNVTKATATFGMGCFWGAESLYGATRGVLRTTVGYAGGSSDLPTYRKMGDHTE- 87

Query:    64 EVVVVEY 70
              V+ ++Y
Sbjct:    88 -VLEIDY 93

GO:0000096 "sulfur amino acid metabolic process" evidence=NAS

GO:0008113 "peptide-methionine (S)-S-oxide reductase activity" evidence=ISS;NAS;IDA

GO:0035071 "salivary gland cell autophagic cell death" evidence=IEP

GO:0048102 "autophagic cell death" evidence=IEP

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0048812 "neuron projection morphogenesis" evidence=IMP

GO:0006979 "response to oxidative stress" evidence=IMP

GO:0034599 "cellular response to oxidative stress" evidence=IEP

GO:0008340 "determination of adult lifespan" evidence=IMP

UNIPROTKB|E2QV17 MSRA "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 139 (54.0 bits), Expect = 1.8e-09, P = 1.8e-09
 Identities = 29/59 (49%), Positives = 36/59 (61%)

Query:    14 TKTAVLAMGCFWAPDGLFGTTKGVLRTKVGYSGGTTENPTYRNIPAFT--EQEVVVVEY 70
             T+ AV  MGCFW  +  F T KGV  T+VGY+GG T NPTY+ + +      EVV V Y
Sbjct:    63 TQMAVFGMGCFWGAERKFWTKKGVYSTQVGYAGGYTSNPTYKEVCSGNTGHAEVVRVVY 121

GO:0008113 "peptide-methionine (S)-S-oxide reductase activity" evidence=IEA

TAIR|locus:2060907 MSRA5 "AT2G18030" [Arabidopsis thaliana (taxid:3702)]

 Score = 140 (54.3 bits), Expect = 2.1e-09, P = 2.1e-09
 Identities = 28/56 (50%), Positives = 34/56 (60%)

Query:    15 KTAVLAMGCFWAPDGLFGTTKGVLRTKVGYSGGTTENPTYRNIPAFTEQEVVVVEY 70
             K+AV A+G FW  +  FG   GV+RT  GY+GGT  NP YRN+    E   V VEY
Sbjct:    53 KSAVFALGSFWRSEAAFGCINGVVRTSAGYAGGTKTNPEYRNLGDHAES--VQVEY 106

GO:0006464 "cellular protein modification process" evidence=ISS

GO:0008113 "peptide-methionine (S)-S-oxide reductase activity" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0016671 "oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor" evidence=IEA

GO:0019538 "protein metabolic process" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

UNIPROTKB|P0A744 msrA "methionine sulfoxide reductase A" [Escherichia coli K-12 (taxid:83333)]

 Score = 135 (52.6 bits), Expect = 3.6e-09, P = 3.6e-09
 Identities = 25/52 (48%), Positives = 31/52 (59%)

Query:     6 SQTNGQNNTKTAVLAMGCFWAPDGLFGTTKGVLRTKVGYSGGTTENPTYRNI 57
             S TN  +  + A+ AMGCFW  + LF    GV  T  GY+GG T NPTYR +
Sbjct:    35 SMTNVPDGMEIAIFAMGCFWGVERLFWQLPGVYSTAAGYTGGYTPNPTYREV 86

GO:0005829 "cytosol" evidence=IDA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0008113 "peptide-methionine (S)-S-oxide reductase activity" evidence=IEA

TIGR_CMR|DET_1241 DET_1241 "peptide methionine sulfoxide reductase MsrA" [Dehalococcoides ethenogenes 195 (taxid:243164)]

 Score = 131 (51.2 bits), Expect = 9.7e-09, P = 9.7e-09
 Identities = 26/59 (44%), Positives = 36/59 (61%)

Query:    14 TKTAVLAMGCFWAPDGLFGTTKGVLRTKVGYSGGTTENPTYRNIPAFT--EQEVVVVEY 70
             T+TAV   GCFW  + +F    GVL+ + GY+GGT  NPTY+ + A      EVV +E+
Sbjct:     2 TETAVFGGGCFWCMEAVFSRLSGVLKVEPGYAGGTLPNPTYQQVCAGDTGHAEVVKLEF 60

GO:0008113 "peptide-methionine (S)-S-oxide reductase activity" evidence=ISS

GO:0030091 "protein repair" evidence=ISS

DICTYBASE|DDB_G0276579 msrA "peptide methionine sulfoxide reductase" [Dictyostelium discoideum (taxid:44689)]

 Score = 129 (50.5 bits), Expect = 1.6e-08, P = 1.6e-08
 Identities = 28/59 (47%), Positives = 36/59 (61%)

Query:    14 TKTAVLAMGCFWAPDGLFGTTKGVLRTKVGYSGGTTENPTYRNIPAFTE--QEVVVVEY 70
             TK A  A GCFW+ + LF    GV +T+VGY+ GT ENPTYR + +      E V +EY
Sbjct:     2 TK-ATFAAGCFWSVELLFQRVAGVTKTRVGYTNGTVENPTYRQVCSGKTGCAEAVELEY 59

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0008113 "peptide-methionine (S)-S-oxide reductase activity" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

UNIPROTKB|E5RJK1 MSRA "Mitochondrial peptide methionine sulfoxide reductase" [Homo sapiens (taxid:9606)]

 Score = 124 (48.7 bits), Expect = 5.3e-08, P = 5.3e-08
 Identities = 26/56 (46%), Positives = 33/56 (58%)

Query:    17 AVLAMGCFWAPDGLFGTTKGVLRTKVGYSGGTTENPTYRNIPAFT--EQEVVVVEY 70
             AV  MGCFW  +  F   KGV  T+VG++GG T NPTY+ + +      EVV V Y
Sbjct:     2 AVFGMGCFWGAERKFWVLKGVYSTQVGFAGGYTSNPTYKEVCSEKTGHAEVVRVVY 57

GO:0005739 "mitochondrion" evidence=IEA

GO:0008113 "peptide-methionine (S)-S-oxide reductase activity" evidence=IEA

UNIPROTKB|P54149 MSRA "Mitochondrial peptide methionine sulfoxide reductase" [Bos taurus (taxid:9913)]

 Score = 132 (51.5 bits), Expect = 6.1e-08, P = 6.1e-08
 Identities = 23/44 (52%), Positives = 30/44 (68%)

Query:    14 TKTAVLAMGCFWAPDGLFGTTKGVLRTKVGYSGGTTENPTYRNI 57
             T+ AV  MGCFW  +  F T KGV  T+VG++GG T NPTY+ +
Sbjct:    63 TQMAVFGMGCFWGAERKFWTLKGVYSTQVGFAGGYTPNPTYKEV 106

GO:0005739 "mitochondrion" evidence=IEA

GO:0008113 "peptide-methionine (S)-S-oxide reductase activity" evidence=IEA

UNIPROTKB|E9PJ70 MSRA "Mitochondrial peptide methionine sulfoxide reductase" [Homo sapiens (taxid:9606)]

 Score = 123 (48.4 bits), Expect = 6.8e-08, P = 6.8e-08
 Identities = 21/41 (51%), Positives = 27/41 (65%)

Query:    17 AVLAMGCFWAPDGLFGTTKGVLRTKVGYSGGTTENPTYRNI 57
             AV  MGCFW  +  F   KGV  T+VG++GG T NPTY+ +
Sbjct:     2 AVFGMGCFWGAERKFWVLKGVYSTQVGFAGGYTSNPTYKEV 42

GO:0008113 "peptide-methionine (S)-S-oxide reductase activity" evidence=IEA

UNIPROTKB|E5RIA9 MSRA "Mitochondrial peptide methionine sulfoxide reductase" [Homo sapiens (taxid:9606)]

 Score = 129 (50.5 bits), Expect = 1.6e-07, P = 1.6e-07
 Identities = 27/59 (45%), Positives = 35/59 (59%)

Query:    14 TKTAVLAMGCFWAPDGLFGTTKGVLRTKVGYSGGTTENPTYRNIPAFT--EQEVVVVEY 70
             T+ AV  MGCFW  +  F   KGV  T+VG++GG T NPTY+ + +      EVV V Y
Sbjct:    65 TQMAVFGMGCFWGAERKFWVLKGVYSTQVGFAGGYTSNPTYKEVCSEKTGHAEVVRVVY 123

GO:0008113 "peptide-methionine (S)-S-oxide reductase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	1.8.4	0.691
4th Layer	1.8.4.11	0.737

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	213
pfam01625	147	pfam01625, PMSR, Peptide methionine sulfoxide redu	1e-18
COG0225	174	COG0225, MsrA, Peptide methionine sulfoxide reduct	2e-15
PRK14054	172	PRK14054, PRK14054, methionine sulfoxide reductase	3e-15
PRK05550	283	PRK05550, PRK05550, bifunctional methionine sulfox	1e-13
PRK13014	186	PRK13014, PRK13014, methionine sulfoxide reductase	5e-12
PRK00058	213	PRK00058, PRK00058, methionine sulfoxide reductase	6e-12
TIGR00401	149	TIGR00401, msrA, methionine-S-sulfoxide reductase	5e-11
PRK14018	521	PRK14018, PRK14018, trifunctional thioredoxin/meth	7e-07

>gnl|CDD|216614 pfam01625, PMSR, Peptide methionine sulfoxide reductase

 Score = 78.4 bits (194), Expect = 1e-18
 Identities = 27/58 (46%), Positives = 35/58 (60%), Gaps = 2/58 (3%)

Query: 15 KTAVLAMGCFWAPDGLFGTTKGVLRTKVGYSGGTTENPTYRNIPAFT--EQEVVVVEY 70
          +TA  A GCFW  + +F    GV+ T+VGY+GG TENPTY  + + T    E V V Y
Sbjct: 1  ETATFAGGCFWGVEAVFEKLPGVISTEVGYAGGDTENPTYEEVCSGTTGHAEAVRVTY 58

This enzyme repairs damaged proteins. Methionine sulfoxide in proteins is reduced to methionine. Length = 147

>gnl|CDD|223303 COG0225, MsrA, Peptide methionine sulfoxide reductase [Posttranslational modification, protein turnover, chaperones]

 Score = 70.7 bits (174), Expect = 2e-15
 Identities = 25/61 (40%), Positives = 30/61 (49%), Gaps = 2/61 (3%)

Query: 12 NNTKTAVLAMGCFWAPDGLFGTTKGVLRTKVGYSGGTTENPTYRNIPAFT--EQEVVVVE 69
             + A  A GCFW  +  F    GVL T  GY+GG T NPTY  + + T    E V V 
Sbjct: 4  AGMEKAYFAGGCFWGVEAYFEQIPGVLSTVSGYAGGHTPNPTYEEVCSGTTGHAEAVEVT 63

Query: 70 Y 70
          Y
Sbjct: 64 Y 64

Length = 174

>gnl|CDD|237597 PRK14054, PRK14054, methionine sulfoxide reductase A; Provisional

 Score = 70.2 bits (173), Expect = 3e-15
 Identities = 24/44 (54%), Positives = 29/44 (65%)

Query: 12 NNTKTAVLAMGCFWAPDGLFGTTKGVLRTKVGYSGGTTENPTYR 55
             +TAVLA GCFW  +  F   KGV+ T+VGY+GG  ENPTY 
Sbjct: 1  MMMETAVLAGGCFWGMEAPFDRVKGVISTRVGYTGGHVENPTYE 44

Length = 172

>gnl|CDD|235499 PRK05550, PRK05550, bifunctional methionine sulfoxide reductase B/A protein; Provisional

 Score = 68.0 bits (167), Expect = 1e-13
 Identities = 25/60 (41%), Positives = 35/60 (58%), Gaps = 2/60 (3%)

Query: 13  NTKTAVLAMGCFWAPDGLFGTTKGVLRTKVGYSGGTTENPTYRNIPAFTEQ--EVVVVEY 70
           +T+ A+ A GCFW  +  F    GVL  + GY+GG T+NPTY  + + T    E V VE+
Sbjct: 126 DTEEAIFAGGCFWGVEYYFKKLPGVLSVESGYTGGDTKNPTYEQVCSGTTGHAEAVRVEF 185

Length = 283

>gnl|CDD|237269 PRK13014, PRK13014, methionine sulfoxide reductase A; Provisional

 Score = 61.6 bits (150), Expect = 5e-12
 Identities = 24/61 (39%), Positives = 32/61 (52%), Gaps = 2/61 (3%)

Query: 12 NNTKTAVLAMGCFWAPDGLFGTTKGVLRTKVGYSGGTTENPTYRNIPAFT--EQEVVVVE 69
          +  +TA  A GCFW  +G+F    GV+    GYSGG  +NPTY  +   T    E V + 
Sbjct: 6  DGMETATFAGGCFWGVEGVFQHVPGVVSVVSGYSGGHVDNPTYEQVCTGTTGHAEAVQIT 65

Query: 70 Y 70
          Y
Sbjct: 66 Y 66

Length = 186

>gnl|CDD|234604 PRK00058, PRK00058, methionine sulfoxide reductase A; Provisional

 Score = 61.8 bits (151), Expect = 6e-12
 Identities = 22/43 (51%), Positives = 26/43 (60%)

Query: 13 NTKTAVLAMGCFWAPDGLFGTTKGVLRTKVGYSGGTTENPTYR 55
            + A+  MGCFW  + LF    GV  T VGY+GG T NPTYR
Sbjct: 44 GMEQAIFGMGCFWGAERLFWQLPGVYSTAVGYAGGYTPNPTYR 86

Length = 213

>gnl|CDD|129496 TIGR00401, msrA, methionine-S-sulfoxide reductase

 Score = 58.2 bits (141), Expect = 5e-11
 Identities = 23/58 (39%), Positives = 29/58 (50%), Gaps = 2/58 (3%)

Query: 15 KTAVLAMGCFWAPDGLFGTTKGVLRTKVGYSGGTTENPTYRNIPAFT--EQEVVVVEY 70
          + A  A GCFW  +  F    GV+ T VGY+ G T NPTY  + +      E V V Y
Sbjct: 1  EIATFAGGCFWGTEKYFRLIPGVVSTAVGYTNGYTPNPTYEEVCSGDTGHAEAVQVTY 58

This model describes peptide methionine sulfoxide reductase (MsrA), a repair enzyme for proteins that have been inactivated by oxidation. The enzyme from E. coli is coextensive with this model and has enzymatic activity. However, in all completed genomes in which this module is present, a second protein module, described in TIGR00357, is also found, and in several cases as part of the same polypeptide chain: N-terminal to this module in Helicobacter pylori and Haemophilus influenzae (as in PilB of Neisseria gonorrhoeae) but C-terminal to it in Treponema pallidum. PilB, containing both domains, has been shown to be important for the expression of adhesins in certain pathogens [Protein fate, Protein modification and repair, Cellular processes, Adaptations to atypical conditions]. Length = 149

>gnl|CDD|184456 PRK14018, PRK14018, trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional

 Score = 48.7 bits (116), Expect = 7e-07
 Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 1/69 (1%)

Query: 3   KTMSQTNGQNNTKTAVLAMGCFWAPDGLFGTTKGVLRTKVGYSGGTTENPTYRNIPAFT- 61
               + +   NT+T  LA GCFW  +  F    GV+    GY+ G T+NP+Y ++   + 
Sbjct: 187 DGQKKDSKIMNTRTIYLAGGCFWGLEAYFQRIDGVVDAVSGYANGNTKNPSYEDVYRHSG 246

Query: 62  EQEVVVVEY 70
             E V V Y
Sbjct: 247 HAETVKVTY 255

Length = 521

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	213
COG0225	174	MsrA Peptide methionine sulfoxide reductase [Postt	100.0
PRK13014	186	methionine sulfoxide reductase A; Provisional	100.0
PRK14054	172	methionine sulfoxide reductase A; Provisional	100.0
PRK00058	213	methionine sulfoxide reductase A; Provisional	100.0
PF01625	155	PMSR: Peptide methionine sulfoxide reductase; Inte	100.0
TIGR00401	149	msrA methionine-S-sulfoxide reductase. This model	100.0
PRK05528	156	methionine sulfoxide reductase A; Provisional	100.0
KOG1635|consensus	191		100.0
PRK05550	283	bifunctional methionine sulfoxide reductase B/A pr	100.0
PRK14018	521	trifunctional thioredoxin/methionine sulfoxide red	100.0
PF00403	62	HMA: Heavy-metal-associated domain; InterPro: IPR0	82.01

>COG0225 MsrA Peptide methionine sulfoxide reductase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=5.2e-53  Score=352.38  Aligned_cols=137  Identities=23%  Similarity=0.398  Sum_probs=124.3

Q ss_pred             CCCccEEEEecCCcchhhhhccCCCCeEEEEeeecCCCCCCCcccccccc-----------cccchhhHHHHHhhcc---
Q psy9124          11 QNNTKTAVLAMGCFWAPDGLFGTTKGVLRTKVGYSGGTTENPTYRNIPAF-----------TEQEVVVVEYCLDLFE---   76 (213)
Q Consensus        11 ~~~~~~a~fagGCFWg~E~~F~~~~GV~~t~vGYagG~~~nPtYe~V~~~-----------~~~e~Vs~e~LL~iF~---   76 (213)
                      ++++++|+||||||||+|++|+++|||++|+|||+||+++||||++||++           |||++|||++||++||   
T Consensus         3 ~~~~~~a~fagGCFWg~E~~f~~i~GV~~t~~GYagG~~~nptY~~Vcsg~TgHaE~V~V~yDp~~isy~~LL~~ff~ih   82 (174)
T COG0225           3 PAGMEKAYFAGGCFWGVEAYFEQIPGVLSTVSGYAGGHTPNPTYEEVCSGTTGHAEAVEVTYDPKVISYEELLEVFFEIH   82 (174)
T ss_pred             cCCcEEEEEeccCccchHHHHhhCCCeEEEeeeEcCCCCCCCChhhccCCCCCceEEEEEEeCCccccHHHHHHHHheec
Confidence            57899999999999999999999999999999999999999999999975           5899999999999999   


Q ss_pred             -ccCCccc----cccccccccccCcccccCCchhhccc-cccccccccCC--ceEEeecCCCCCCchhhccC---CCCCC
Q psy9124          77 -PSGHGKR----RRRRDSNSSNMTQTFTYASHPHVHHH-DNHDNDTQYTK--FQENIEYTVLMPGDLYRKTI---SMESS  145 (213)
Q Consensus        77 -PT~~~rq----G~QYRSaIy~~~~eq~~~q~~~a~~~-~~~~~~~~~~k--vTEi~p~~~F~pAE~YHQ~Y---~p~~y  145 (213)
                       ||+.|||    |+|||||||++|++    |+.+|+++ ++...++.+++  +|||+|+++|||||||||+|   ||++|
T Consensus        83 DPT~~nrQGnD~GtqYRs~Iy~~~~~----q~~~a~~~~~~~q~~~~~~~~IvteI~p~~~Fy~AEeYHQ~Yl~KNP~gY  158 (174)
T COG0225          83 DPTSLNRQGNDRGTQYRSAIYYTNEE----QKAIAEASIEELQASGYFKKPIVTEIEPAKNFYPAEEYHQDYLKKNPNGY  158 (174)
T ss_pred             CCCCCCccCCcccccceeEEEEcCHH----HHHHHHHHHHHHHHhccCCCCeEEEeeccccCcccHHHHHHHHHhCCCCc
Confidence             9999999    99999999999995    78888885 23334567774  99999999999999999999   99999


Q ss_pred             ccchhh
Q psy9124         146 CSTFLL  151 (213)
Q Consensus       146 C~~~l~  151 (213)
                      |+..+.
T Consensus       159 ~~~~~~  164 (174)
T COG0225         159 CHIGLT  164 (174)
T ss_pred             eeeccc
Confidence            997443

>PRK13014 methionine sulfoxide reductase A; Provisional

Probab=100.00  E-value=5.3e-50  Score=338.94  Aligned_cols=142  Identities=23%  Similarity=0.374  Sum_probs=126.7

Q ss_pred             CCCCCccEEEEecCCcchhhhhccCCCCeEEEEeeecCCCCCCCcccccccc-----------cccchhhHHHHHhhcc-
Q psy9124           9 NGQNNTKTAVLAMGCFWAPDGLFGTTKGVLRTKVGYSGGTTENPTYRNIPAF-----------TEQEVVVVEYCLDLFE-   76 (213)
Q Consensus         9 ~~~~~~~~a~fagGCFWg~E~~F~~~~GV~~t~vGYagG~~~nPtYe~V~~~-----------~~~e~Vs~e~LL~iF~-   76 (213)
                      +.++++++|+||||||||+|++|+++|||++|+|||+||.++||||++||++           |||++|||++||++|| 
T Consensus         3 ~~~~~~~~a~~agGCFWg~E~~f~~l~GV~~t~vGYagG~~~nPtY~~Vcsg~tgH~E~V~V~yDp~~iSy~~LL~~Ff~   82 (186)
T PRK13014          3 AAADGMETATFAGGCFWGVEGVFQHVPGVVSVVSGYSGGHVDNPTYEQVCTGTTGHAEAVQITYDPKQVSYENLLQIFFS   82 (186)
T ss_pred             CCCCCccEEEEecCCceeeHHHHccCCCEEEEEeeecCCCCCCCChhhhcCCCCCceEEEEEEECCCcCCHHHHHHHHHH
Confidence            5678899999999999999999999999999999999999999999999975           5899999999999999 


Q ss_pred             ---ccCCccc----cccccccccccCcccccCCchhhccc-cccccccccCC--ceEEeecCCCCCCchhhccC---CCC
Q psy9124          77 ---PSGHGKR----RRRRDSNSSNMTQTFTYASHPHVHHH-DNHDNDTQYTK--FQENIEYTVLMPGDLYRKTI---SME  143 (213)
Q Consensus        77 ---PT~~~rq----G~QYRSaIy~~~~eq~~~q~~~a~~~-~~~~~~~~~~k--vTEi~p~~~F~pAE~YHQ~Y---~p~  143 (213)
                         ||+.|+|    |+||||+||++|++    |+++|+++ +....+..+.+  +|||+|+++|||||+|||+|   ||.
T Consensus        83 ~hDPt~~~~Qg~D~G~QYRS~If~~~~e----Q~~~a~~~~~~~~~~~~~~~~i~Tei~p~~~Fy~AEeyHQ~Yl~k~p~  158 (186)
T PRK13014         83 THDPTQLNRQGPDRGEQYRSAIFYHDEE----QKKVAEAYIAQLDEAGIFKKPIVTPIKPYKNFYPAEDYHQDYLKKNPT  158 (186)
T ss_pred             hcCCCccCCCCCCCCCCceEEEEeCCHH----HHHHHHHHHHHHHhccccCCCcEEEEecCCCeeeCHHHHHHHHHhCCC
Confidence               8888898    99999999999995    78888874 22223334655  99999999999999999999   894


Q ss_pred             -CCccchhhhhc
Q psy9124         144 -SSCSTFLLVSG  154 (213)
Q Consensus       144 -~yC~~~l~~s~  154 (213)
                       +||+..+.+++
T Consensus       159 ~~yc~~~~~~~~  170 (186)
T PRK13014        159 HPYIVYNDLPKG  170 (186)
T ss_pred             CCccEEEeChhh
Confidence             89999988865

>PRK14054 methionine sulfoxide reductase A; Provisional

Probab=100.00  E-value=7.2e-49  Score=328.60  Aligned_cols=132  Identities=26%  Similarity=0.428  Sum_probs=116.6

Q ss_pred             CccEEEEecCCcchhhhhccCCCCeEEEEeeecCCCCCCCcccccccc-----------cccchhhHHHHHhhcc----c
Q psy9124          13 NTKTAVLAMGCFWAPDGLFGTTKGVLRTKVGYSGGTTENPTYRNIPAF-----------TEQEVVVVEYCLDLFE----P   77 (213)
Q Consensus        13 ~~~~a~fagGCFWg~E~~F~~~~GV~~t~vGYagG~~~nPtYe~V~~~-----------~~~e~Vs~e~LL~iF~----P   77 (213)
                      ++++|+||||||||+|+.|+++|||++|+|||+||.++||||++||++           |||++|||++||++||    |
T Consensus         2 ~~~~a~fagGCFWg~E~~f~~~~GV~~t~vGYagG~~~~PtY~~Vcsg~tgh~E~V~V~yDp~~isy~~Ll~~f~~~hDP   81 (172)
T PRK14054          2 MMETAVLAGGCFWGMEAPFDRVKGVISTRVGYTGGHVENPTYEQVCSGTTGHAEAVEITYDPAVISYRELLELFFQIHDP   81 (172)
T ss_pred             CceEEEEEcCChhhhHHHHccCCCEEEEEeeecCCCCCCCChhhcccCCCCCeEEEEEEECCCcCCHHHHHHHHHHhCCC
Confidence            679999999999999999999999999999999999999999999975           5899999999999999    8


Q ss_pred             cCCccc----cccccccccccCcccccCCchhhccc-cccccccccCC--ceEEeecCCCCCCchhhccC---CCCCCcc
Q psy9124          78 SGHGKR----RRRRDSNSSNMTQTFTYASHPHVHHH-DNHDNDTQYTK--FQENIEYTVLMPGDLYRKTI---SMESSCS  147 (213)
Q Consensus        78 T~~~rq----G~QYRSaIy~~~~eq~~~q~~~a~~~-~~~~~~~~~~k--vTEi~p~~~F~pAE~YHQ~Y---~p~~yC~  147 (213)
                      |..|+|    |+||||+||++|++    |+++|+++ +....+..+.+  +|||+|+++|||||+|||+|   ||.+||+
T Consensus        82 t~~~~Qg~D~G~qYRS~If~~~~~----q~~~a~~~~~~~~~~~~~~~~i~Tei~~~~~Fy~AEeyHQ~Yl~k~p~~~~~  157 (172)
T PRK14054         82 TTLNRQGNDRGTQYRSAIFYHDEE----QKEIAEASIAELQASGLFDKPIVTEVEPAETFYEAEEYHQDYLEKNPNGYCC  157 (172)
T ss_pred             CccCCCCCCCCcCceeEEEeCCHH----HHHHHHHHHHHHHHhcccCCCcEEEEecCCCceECHHHHHHHHHhCCCCcce
Confidence            888888    99999999999995    78888874 22222222555  89999999999999999999   8977765


Q ss_pred             c
Q psy9124         148 T  148 (213)
Q Consensus       148 ~  148 (213)
                      .
T Consensus       158 ~  158 (172)
T PRK14054        158 I  158 (172)
T ss_pred             e
Confidence            4

>PRK00058 methionine sulfoxide reductase A; Provisional

Probab=100.00  E-value=2.7e-48  Score=334.20  Aligned_cols=134  Identities=24%  Similarity=0.371  Sum_probs=118.9

Q ss_pred             CCCccEEEEecCCcchhhhhccCCCCeEEEEeeecCCCCCCCcccccccc-----------cccchhhHHHHHhhcc---
Q psy9124          11 QNNTKTAVLAMGCFWAPDGLFGTTKGVLRTKVGYSGGTTENPTYRNIPAF-----------TEQEVVVVEYCLDLFE---   76 (213)
Q Consensus        11 ~~~~~~a~fagGCFWg~E~~F~~~~GV~~t~vGYagG~~~nPtYe~V~~~-----------~~~e~Vs~e~LL~iF~---   76 (213)
                      ++++++|+||||||||+|++|++++||++|+|||+||..+||||++||++           |||++|||++||++||   
T Consensus        42 ~~~~~~a~fagGCFWg~E~~F~~l~GV~~t~vGYagG~~~~PtY~~VcsG~tgH~EaV~V~YDp~~ISy~~LL~~Ff~~h  121 (213)
T PRK00058         42 PEGMEQAIFGMGCFWGAERLFWQLPGVYSTAVGYAGGYTPNPTYREVCSGRTGHAEVVRVVYDPAVISYEQLLQVFWENH  121 (213)
T ss_pred             CCCccEEEEEccCcchhHHHHhcCCCEEEEEeeecCCCCCCCChhhcccCCCCCeEEEEEEECCccCCHHHHHHHHHHhc
Confidence            46799999999999999999999999999999999999999999999986           5899999999999999   


Q ss_pred             -ccCCccc----cccccccccccCcccccCCchhhccccccccccc-----cCC-ceEEeecCCCCCCchhhccC---CC
Q psy9124          77 -PSGHGKR----RRRRDSNSSNMTQTFTYASHPHVHHHDNHDNDTQ-----YTK-FQENIEYTVLMPGDLYRKTI---SM  142 (213)
Q Consensus        77 -PT~~~rq----G~QYRSaIy~~~~eq~~~q~~~a~~~~~~~~~~~-----~~k-vTEi~p~~~F~pAE~YHQ~Y---~p  142 (213)
                       ||..|+|    |+||||+|||+|++    |++.|+++ +...++.     ..+ +|||+|++.|||||+|||+|   ||
T Consensus       122 DPt~~n~QG~D~G~QYRS~Ify~~~e----Q~~~a~~~-~~~~~~~~~~~~~~~i~TeI~~~~~Fy~AEeyHQ~Yl~k~p  196 (213)
T PRK00058        122 DPTQGMRQGNDVGTQYRSAIYTLTPE----QLAAAEAS-REAYQQALAAAGDGPITTEIAPAPPFYYAEDYHQQYLAKNP  196 (213)
T ss_pred             CCcccCCCCCCCCcCceEEEEeCCHH----HHHHHHHH-HHHHHHHhhhccCCCeEEEEecCCCcccCHHHHHHHHHhCC
Confidence             8888998    99999999999995    78888874 2222221     234 99999999999999999999   89


Q ss_pred             CCCccch
Q psy9124         143 ESSCSTF  149 (213)
Q Consensus       143 ~~yC~~~  149 (213)
                      .+|||.+
T Consensus       197 ~~yc~~~  203 (213)
T PRK00058        197 NGYCGLG  203 (213)
T ss_pred             CCccccC
Confidence            9999953

>PF01625 PMSR: Peptide methionine sulfoxide reductase; InterPro: IPR002569 Peptide methionine sulphoxide reductase (Msr) reverses the inactivation of many proteins due to the oxidation of critical methionine residues by reducing methionine sulphoxide, Met(O), to methionine []

Probab=100.00  E-value=2.8e-48  Score=320.18  Aligned_cols=129  Identities=26%  Similarity=0.439  Sum_probs=112.1

Q ss_pred             cEEEEecCCcchhhhhccCCCCeEEEEeeecCCCCCCCcccccccc-----------cccchhhHHHHHhhcc----ccC
Q psy9124          15 KTAVLAMGCFWAPDGLFGTTKGVLRTKVGYSGGTTENPTYRNIPAF-----------TEQEVVVVEYCLDLFE----PSG   79 (213)
Q Consensus        15 ~~a~fagGCFWg~E~~F~~~~GV~~t~vGYagG~~~nPtYe~V~~~-----------~~~e~Vs~e~LL~iF~----PT~   79 (213)
                      |+|+||||||||+|++|+++|||++|+|||+||..++|||++||++           +||++|||++||++||    ||.
T Consensus         1 e~a~fa~GCFW~~e~~f~~~~GV~~t~vGYagG~~~~PtY~~v~~g~tgh~E~V~V~yD~~~is~~~Ll~~f~~~~dPt~   80 (155)
T PF01625_consen    1 EKAYFAGGCFWGVEAAFRRLPGVISTRVGYAGGTTPNPTYRQVCSGRTGHAEAVRVTYDPSVISYEELLDVFFRIHDPTQ   80 (155)
T ss_dssp             EEEEEEESSHHHHHHHHHTSTTEEEEEEEEESSSSSS--HHHHHTTTTT-EEEEEEEEETTTS-HHHHHHHHHHHS-TTS
T ss_pred             CEEEEecCCCeEhHHHHhhCCCEEEEEecccCCCCCCCcceeeecCCCCCeEEEEEEECCCcccHHHHHHHHHHhcCCcc
Confidence            5899999999999999999999999999999999999999999986           5899999999999999    999


Q ss_pred             Cccc----cccccccccccCcccccCCchhhccccccccccc-cCC--ceEEeecCCCCCCchhhccC---CCCCCccc
Q psy9124          80 HGKR----RRRRDSNSSNMTQTFTYASHPHVHHHDNHDNDTQ-YTK--FQENIEYTVLMPGDLYRKTI---SMESSCST  148 (213)
Q Consensus        80 ~~rq----G~QYRSaIy~~~~eq~~~q~~~a~~~~~~~~~~~-~~k--vTEi~p~~~F~pAE~YHQ~Y---~p~~yC~~  148 (213)
                      .|+|    |+||||+||++|++    |+.+|+++ +...+.. +.+  +|||+|++.|||||+|||+|   ||..||+.
T Consensus        81 ~~~Qg~d~G~qYrs~If~~~~~----q~~~a~~~-~~~~~~~~~~~~i~tei~p~~~Fy~AE~yHQ~Yl~k~p~~yc~~  154 (155)
T PF01625_consen   81 VNGQGNDRGTQYRSAIFYHDEE----QKKIAEAS-IAELQAKRFGRPIVTEIEPLKNFYPAEEYHQKYLEKNPNGYCHY  154 (155)
T ss_dssp             TSEETTEESGGG-EEEEESSHH----HHHHHHHH-HHHHHHHTTSSSBS-EEEECEEEEEHHGGGTTHHHHSTTSTTSS
T ss_pred             cccccCcccccceeEEecCCHH----HHHHHHHH-HHHHHHhcCCCCeEEEEecCCcEEECHHHHHHHHHhCCcccEec
Confidence            8888    99999999999995    78888885 3333333 555  99999999999999999999   99999985

It is present in most living organisms, and the cognate structural gene belongs to the so-called minimum gene set [, ]. The domains: MsrA and MsrB, reduce different epimeric forms of methionine sulphoxide. This group represent MsrA, the crystal structure of which has been determined in a number of organisms. In Mycobacterium tuberculosis, the MsrA structure has been determined to 1.5 Angstrom resolution []. In contrast to the three catalytic cysteine residues found in previously characterised MsrA structures, M. tuberculosis MsrA represents a class containing only two functional cysteine residues. The overall structure shows no resemblance to the structures of MsrB (IPR002579 from INTERPRO) from other organisms; though the active sites show approximate mirror symmetry. In each case, conserved amino acid motifs mediate the stereo-specific recognition and reduction of the substrate. In a number of pathogenic bacteria including Neisseria gonorrhoeae, the MsrA and MsrB domains are fused; the MsrA being N-terminal to MsrB. This arrangement is reversed in Treponema pallidum. In N. gonorrhoeae and Neisseria meningitidis a thioredoxin domain is fused to the N terminus. This may function to reduce the active sites of the downstream MsrA and MsrB domains. ; GO: 0016671 oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor, 0019538 protein metabolic process, 0055114 oxidation-reduction process; PDB: 2GT3_A 1FF3_B 2IEM_A 3E0M_D 2J89_A 3PIN_B 3PIM_B 3PIL_B 2L90_A 3BQF_A ....

>TIGR00401 msrA methionine-S-sulfoxide reductase

Probab=100.00  E-value=2e-47  Score=313.40  Aligned_cols=122  Identities=25%  Similarity=0.396  Sum_probs=109.7

Q ss_pred             cEEEEecCCcchhhhhccCCCCeEEEEeeecCCCCCCCcccccccc-----------cccchhhHHHHHhhcc----ccC
Q psy9124          15 KTAVLAMGCFWAPDGLFGTTKGVLRTKVGYSGGTTENPTYRNIPAF-----------TEQEVVVVEYCLDLFE----PSG   79 (213)
Q Consensus        15 ~~a~fagGCFWg~E~~F~~~~GV~~t~vGYagG~~~nPtYe~V~~~-----------~~~e~Vs~e~LL~iF~----PT~   79 (213)
                      ++|+||||||||+|++|+++|||++|+|||+||..+||+|++||++           +||.+|||++||++||    ||.
T Consensus         1 ~~~~~agGCFWg~E~~f~~~~GV~~t~~GYagG~~~~PtY~~Vc~g~tgh~E~V~V~yDp~~is~~~Ll~~f~~~hdPt~   80 (149)
T TIGR00401         1 EIATFAGGCFWGVEKYFWLIPGVYSTAVGYTGGYTPNPTYEEVCSGDTGHAEAVQVTYDPKVISYEELLDVFWEIHDPTQ   80 (149)
T ss_pred             CEEEEecCCchhhHHHHhcCCCEEEEEEeeCCCCCCCCChhhcccCCCCceEEEEEEECCCcCcHHHHHHHHHHhCCCCc
Confidence            5799999999999999999999999999999999999999999986           5899999999999999    888


Q ss_pred             Cccc----cccccccccccCcccccCCchhhccc-cccccccccCC--ceEEeecCCCCCCchhhccC
Q psy9124          80 HGKR----RRRRDSNSSNMTQTFTYASHPHVHHH-DNHDNDTQYTK--FQENIEYTVLMPGDLYRKTI  140 (213)
Q Consensus        80 ~~rq----G~QYRSaIy~~~~eq~~~q~~~a~~~-~~~~~~~~~~k--vTEi~p~~~F~pAE~YHQ~Y  140 (213)
                      .|+|    |+||||+||++|++    |++.|+++ +....+..+.+  +|||+|+++|||||+|||+|
T Consensus        81 ~~~Qg~d~G~qYRs~If~~~~~----q~~~a~~~~~~~~~~~~~~~~i~tei~~~~~Fy~AE~yHQ~Y  144 (149)
T TIGR00401        81 GNRQGNDIGTQYRSGIYYHSDE----QEKAARASKERLQAAANYGDPIVTEIEPAENFYYAEEYHQQY  144 (149)
T ss_pred             CCCCCCCCCCCceEEEEeCCHH----HHHHHHHHHHHHHHhcccCCCeEEEEecCCCeeecHHHHHHH
Confidence            8888    99999999999995    78888874 22222335665  99999999999999999999

This model describes peptide methionine sulfoxide reductase (MsrA), a repair enzyme for proteins that have been inactivated by oxidation. The enzyme from E. coli is coextensive with this model and has enzymatic activity. However, in all completed genomes in which this module is present, a second protein module, described in TIGR00357, is also found, and in several cases as part of the same polypeptide chain: N-terminal to this module in Helicobacter pylori and Haemophilus influenzae (as in PilB of Neisseria gonorrhoeae) but C-terminal to it in Treponema pallidum. PilB, containing both domains, has been shown to be important for the expression of adhesins in certain pathogens.

>PRK05528 methionine sulfoxide reductase A; Provisional

Probab=100.00  E-value=5.5e-46  Score=306.98  Aligned_cols=131  Identities=16%  Similarity=0.212  Sum_probs=114.0

Q ss_pred             ccEEEEecCCcchhhhhccCCCCeEEEEeeecCCCCCCCccc------ccccccccchhhHHHHHhhcc----ccCCccc
Q psy9124          14 TKTAVLAMGCFWAPDGLFGTTKGVLRTKVGYSGGTTENPTYR------NIPAFTEQEVVVVEYCLDLFE----PSGHGKR   83 (213)
Q Consensus        14 ~~~a~fagGCFWg~E~~F~~~~GV~~t~vGYagG~~~nPtYe------~V~~~~~~e~Vs~e~LL~iF~----PT~~~rq   83 (213)
                      |++|+||||||||+|++|+++|||++|+|||+||..+||+..      -|...|||.+|||++||++||    ||..|+|
T Consensus         1 ~~~a~fagGCFWg~E~~f~~l~GV~~t~vGYagG~~~~p~~~~tgH~E~V~V~yDp~~isy~~LL~~f~~~hdPt~~~~Q   80 (156)
T PRK05528          1 METVYFAGGCLWGVQAFFKTLPGVIHTEAGRANGRTSTLDGPYDGYAECVKTHFDPRMVSITDLMGYLFEIIDPYSVNKQ   80 (156)
T ss_pred             CCEEEEecCCchhhHHHHhcCCCEEEEEEEcCCCCCCCCCCCCCCcEEEEEEEECCCcCCHHHHHHHHHHhCCccccccc
Confidence            578999999999999999999999999999999999998633      366678999999999999999    8888888


Q ss_pred             ----cccccccccccCcccccCCchhhccccccccccccCC-ceEEeecCCCCCCchhhccC---CCCCCccchh
Q psy9124          84 ----RRRRDSNSSNMTQTFTYASHPHVHHHDNHDNDTQYTK-FQENIEYTVLMPGDLYRKTI---SMESSCSTFL  150 (213)
Q Consensus        84 ----G~QYRSaIy~~~~eq~~~q~~~a~~~~~~~~~~~~~k-vTEi~p~~~F~pAE~YHQ~Y---~p~~yC~~~l  150 (213)
                          |+|||||||++|++    |++.|++. ....++. .+ +|||.|+++|||||+|||+|   ||.+||+..+
T Consensus        81 g~D~G~QYRS~If~~d~e----Q~~~a~~~-~~~~~~~-~~i~Tei~~~~~Fy~AE~yHQ~Yl~k~p~~yc~~~~  149 (156)
T PRK05528         81 GNDVGEKYRTGIYSEVDD----HLIEARQF-IERREDA-DKIAVEVLPLTNYVKSAEEHQDRLEKFPEDYCHIPK  149 (156)
T ss_pred             CCCCCCCceEEEEeCCHH----HHHHHHHH-HHHHhcC-CCeEEEEecCCCeeecHHHHHHHHHhCCCCCcccCh
Confidence                99999999999995    78888874 2222221 24 89999999999999999999   8999998743

>KOG1635|consensus

Probab=100.00  E-value=8e-46  Score=308.65  Aligned_cols=135  Identities=21%  Similarity=0.401  Sum_probs=119.8

Q ss_pred             CCCCCccEEEEecCCcchhhhhccCCCCeEEEEeeecCCCCCCCcccccccc-----------cccchhhHHHHHhhcc-
Q psy9124           9 NGQNNTKTAVLAMGCFWAPDGLFGTTKGVLRTKVGYSGGTTENPTYRNIPAF-----------TEQEVVVVEYCLDLFE-   76 (213)
Q Consensus         9 ~~~~~~~~a~fagGCFWg~E~~F~~~~GV~~t~vGYagG~~~nPtYe~V~~~-----------~~~e~Vs~e~LL~iF~-   76 (213)
                      .++++++.|+||+|||||+|+.|+++|||++|+|||+||.+.||||++||++           |||++|+|++|||+|| 
T Consensus        19 ~~~~g~q~a~fg~GCFWg~E~a~~~l~gV~~T~vGYagG~~~nPtYk~vc~~tT~HaEvvrV~ydpk~~sy~~Lld~Fw~   98 (191)
T KOG1635|consen   19 VPAPGLQFATFGAGCFWGVELAYQRLPGVVRTEVGYAGGITDNPTYKDVCSGTTNHAEVVRVQYDPKVISYEELLDFFWS   98 (191)
T ss_pred             CCCCccceeeeeccchhhHHHHHhhcCCeEEEeecccCCccCCcchhhhccCCCCcceEEEEEeCcccccHHHHHHHHHH
Confidence            3456689999999999999999999999999999999999999999999994           5899999999999999 


Q ss_pred             ---ccCCccc----cccccccccccCcccccCCchhhcccccccccccc-CC-ceEEeecCCCCCCchhhccC---CC-C
Q psy9124          77 ---PSGHGKR----RRRRDSNSSNMTQTFTYASHPHVHHHDNHDNDTQY-TK-FQENIEYTVLMPGDLYRKTI---SM-E  143 (213)
Q Consensus        77 ---PT~~~rq----G~QYRSaIy~~~~eq~~~q~~~a~~~~~~~~~~~~-~k-vTEi~p~~~F~pAE~YHQ~Y---~p-~  143 (213)
                         ||+.|||    |+||||+||++++|    |+.+|.++ +++.++++ ++ +|+|+|++.||.||+|||+|   +| .
T Consensus        99 ~HdPtt~n~QG~D~GtQYRS~I~~~s~e----q~k~A~~s-~e~~Q~k~~~kI~T~I~p~~kFY~AE~yHQqYl~K~~~~  173 (191)
T KOG1635|consen   99 RHDPTTLNRQGNDVGTQYRSGIYTYSPE----QEKLARES-KEREQKKWNGKIVTEILPAKKFYRAEEYHQQYLSKNPRN  173 (191)
T ss_pred             cCCchhhhccCCcccceeeeeeeeCCHH----HHHHHHHH-HHHHHhccCCcceEEEeeccchhhchHHHHHHHhhCCCC
Confidence               8888998    99999999999995    78888876 44555554 44 99999999999999999999   77 7


Q ss_pred             CCccc
Q psy9124         144 SSCST  148 (213)
Q Consensus       144 ~yC~~  148 (213)
                      |||..
T Consensus       174 Gy~~s  178 (191)
T KOG1635|consen  174 GYAQS  178 (191)
T ss_pred             ccccc
Confidence            88543

>PRK05550 bifunctional methionine sulfoxide reductase B/A protein; Provisional

Probab=100.00  E-value=1.1e-44  Score=323.23  Aligned_cols=135  Identities=21%  Similarity=0.345  Sum_probs=119.0

Q ss_pred             CCCccEEEEecCCcchhhhhccCCCCeEEEEeeecCCCCCCCcccccccc-----------cccchhhHHHHHhhcc---
Q psy9124          11 QNNTKTAVLAMGCFWAPDGLFGTTKGVLRTKVGYSGGTTENPTYRNIPAF-----------TEQEVVVVEYCLDLFE---   76 (213)
Q Consensus        11 ~~~~~~a~fagGCFWg~E~~F~~~~GV~~t~vGYagG~~~nPtYe~V~~~-----------~~~e~Vs~e~LL~iF~---   76 (213)
                      +..+++|+||||||||+|++|+++|||++|+|||+||.++||||++||++           |||.+|||++||++||   
T Consensus       124 ~~~~~~~~fagGCFWg~E~~F~~~~GV~~t~vGYagG~~~nPtY~~VcsG~tgH~EaV~V~yDp~~isy~~LL~~F~~~h  203 (283)
T PRK05550        124 AYDTEEAIFAGGCFWGVEYYFKKLPGVLSVESGYTGGDTKNPTYEQVCSGTTGHAEAVRVEFDPAKISYETLLKVFFEIH  203 (283)
T ss_pred             cccceEEEEecCCchhhhhhHhhCcCEEEEEEeeCCCCCCCCChhhcccCCCCCeEEEEEEECCccCCHHHHHHHHHhhc
Confidence            45689999999999999999999999999999999999999999999986           5899999999999998   


Q ss_pred             -ccCCccc----cccccccccccCcccccCCchhhccccccccccccCC-ceEEeecCCCCCCchhhccC---CCCC-Cc
Q psy9124          77 -PSGHGKR----RRRRDSNSSNMTQTFTYASHPHVHHHDNHDNDTQYTK-FQENIEYTVLMPGDLYRKTI---SMES-SC  146 (213)
Q Consensus        77 -PT~~~rq----G~QYRSaIy~~~~eq~~~q~~~a~~~~~~~~~~~~~k-vTEi~p~~~F~pAE~YHQ~Y---~p~~-yC  146 (213)
                       ||..|+|    |+||||+||++|++    |+++|+++ +...++...+ +|||+|+++|||||+|||+|   ||.+ ||
T Consensus       204 DPt~~~~Qg~D~G~QYRS~If~~d~e----q~~~A~~~-~~~~~~~~~~i~TeI~~l~~Fy~AEeyHQ~Yl~k~p~~~yc  278 (283)
T PRK05550        204 DPTQLNRQGPDIGTQYRSAIFYHDDE----QKQIAEKL-IAELTKKGYPVVTEVEAAGPFYPAEDYHQDYYEKHGKQPYC  278 (283)
T ss_pred             CCCccCCCCCCCCcCceEEEEeCCHH----HHHHHHHH-HHHHHhcCCceEEEEeeCCCeeECHHHHHHHHHhCCCCCee
Confidence             8888888    99999999999995    78888875 2223322225 99999999999999999999   8865 99


Q ss_pred             cchh
Q psy9124         147 STFL  150 (213)
Q Consensus       147 ~~~l  150 (213)
                      +..+
T Consensus       279 ~~~~  282 (283)
T PRK05550        279 HIVV  282 (283)
T ss_pred             eeeC
Confidence            8754

>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional

Probab=100.00  E-value=3.3e-44  Score=342.27  Aligned_cols=137  Identities=21%  Similarity=0.377  Sum_probs=123.9

Q ss_pred             CCCccEEEEecCCcchhhhhccCCCCeEEEEeeecCCCCCCCcccccccc----------cccchhhHHHHHhhcc----
Q psy9124          11 QNNTKTAVLAMGCFWAPDGLFGTTKGVLRTKVGYSGGTTENPTYRNIPAF----------TEQEVVVVEYCLDLFE----   76 (213)
Q Consensus        11 ~~~~~~a~fagGCFWg~E~~F~~~~GV~~t~vGYagG~~~nPtYe~V~~~----------~~~e~Vs~e~LL~iF~----   76 (213)
                      +.++++|+||||||||+|++|+++|||++|+||||||.++||||++||++          |||.+|||++||++||    
T Consensus       195 ~~~~~~~~~agGCFWg~e~~f~~~~GV~~t~~GYagG~~~~PtY~~Vc~gtgH~E~V~V~yDp~~is~~~Ll~~f~~~~d  274 (521)
T PRK14018        195 IMNTRTIYLAGGCFWGLEAYFQRIDGVVDAVSGYANGNTKNPSYEDVYRHSGHAETVKVTYDADKLSLDTILQYYFRVVD  274 (521)
T ss_pred             CCCccEEEEecCCchhhHHHHccCCCEEEEEEeeCCCCCCCCChhhccCCCCcEEEEEEEECCCcCcHHHHHHHHHHhCC
Confidence            56789999999999999999999999999999999999999999999875          5899999999999999    


Q ss_pred             ccCCccc----cccccccccccCcccccCCchhhccccccccccccCC--ceEEeecCCCCCCchhhccC---CCCCCcc
Q psy9124          77 PSGHGKR----RRRRDSNSSNMTQTFTYASHPHVHHHDNHDNDTQYTK--FQENIEYTVLMPGDLYRKTI---SMESSCS  147 (213)
Q Consensus        77 PT~~~rq----G~QYRSaIy~~~~eq~~~q~~~a~~~~~~~~~~~~~k--vTEi~p~~~F~pAE~YHQ~Y---~p~~yC~  147 (213)
                      ||..|+|    |+||||+|||+|++    |++.|+++ ....++++.+  +|||.|++.|||||+|||+|   ||.+||+
T Consensus       275 Pt~~~~Qg~d~G~qYrs~I~~~~~e----q~~~a~~~-~~~~~~~~~~~i~tei~~~~~Fy~AE~yHQ~Yl~k~p~~yc~  349 (521)
T PRK14018        275 PTSLNKQGNDTGTQYRSGVYYTDPA----DKAVIAAA-LKREQQKYQLPLVVENEPLKNFYDAEEYHQDYLIKNPNGYCH  349 (521)
T ss_pred             CccccccCCCCCCCceEEEEeCCHH----HHHHHHHH-HHHHHHHcCCCeEEEEecCCCeeecHHHHHHHHHhCCCceeE
Confidence            9999988    99999999999995    78888875 3334455665  99999999999999999999   8999999


Q ss_pred             chhhh
Q psy9124         148 TFLLV  152 (213)
Q Consensus       148 ~~l~~  152 (213)
                      ..+..
T Consensus       350 ~~~~~  354 (521)
T PRK14018        350 IDLRK  354 (521)
T ss_pred             eeccc
Confidence            87764

>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures

Probab=82.01  E-value=0.75  Score=31.15  Aligned_cols=46  Identities=15%  Similarity=0.230  Sum_probs=35.3

Q ss_pred             cCCcchhhhhccCCCCeEEEEeeecCCCCCCCcccccccccccchhhHHHHHhh
Q psy9124          21 MGCFWAPDGLFGTTKGVLRTKVGYSGGTTENPTYRNIPAFTEQEVVVVEYCLDL   74 (213)
Q Consensus        21 gGCFWg~E~~F~~~~GV~~t~vGYagG~~~nPtYe~V~~~~~~e~Vs~e~LL~i   74 (213)
                      ++|-+-++..+.++|||.++.+=+..+        .|...+++..+++++|.+.
T Consensus        10 ~~C~~~v~~~l~~~~GV~~v~vd~~~~--------~v~v~~~~~~~~~~~i~~~   55 (62)
T PF00403_consen   10 EGCAKKVEKALSKLPGVKSVKVDLETK--------TVTVTYDPDKTSIEKIIEA   55 (62)
T ss_dssp             HHHHHHHHHHHHTSTTEEEEEEETTTT--------EEEEEESTTTSCHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCCCcEEEEECCCC--------EEEEEEecCCCCHHHHHHH
Confidence            578899999999999999999977765        4444666666777766654

These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	213
2gt3_A	212	Solution Structure And Dynamics Of The Reduced Form		6e-09
2iem_A	211	Solution Structure Of An Oxidized Form (Cys51-Cys19		6e-09
1fva_A	217	Crystal Structure Of Bovine Methionine Sulfoxide Re		3e-08
2l90_A	212	Solution Structure Of Murine Myristoylated Msra Len		6e-08
4gwb_A	168	Crystal Structure Of Putative Peptide Methionine Su		9e-08
1ff3_A	211	Structure Of The Peptide Methionine Sulfoxide Reduc		1e-07
1fvg_A	199	Crystal Structure Of Bovine Peptide Methionine Sulf		1e-07
1nwa_A	203	Structure Of Mycobacterium Tuberculosis Methionine		1e-06
3bqe_A	194	Structure Of The Central Domain (Msra) Of Neisseria		8e-06
3bqh_A	193	Structure Of The Central Domain (Msra) Of Neisseria		8e-06
2j89_A	261	Functional And Structural Aspects Of Poplar Cytosol		4e-05
3bqf_A	194	Structure Of The Central Domain (Msra) Of Neisseria		1e-04
3bqg_A	194	Structure Of The Central Domain (msra) Of Neisseria		1e-04
3e0m_A	313	Crystal Structure Of Fusion Protein Of Msra And Msr		4e-04

>pdb|2GT3|A Chain A, Solution Structure And Dynamics Of The Reduced Form Of Methionine Sulfoxide Reductase A From Escherichia Coli, A 23 Kda Protein Length = 212

Iteration: 1
 Score = 57.4 bits (137), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 25/52 (48%), Positives = 31/52 (59%)
Query: 6  SQTNGQNNTKTAVLAMGCFWAPDGLFGTTKGVLRTKVGYSGGTTENPTYRNI 57
          S TN  +  + A+ AMGCFW  + LF    GV  T  GY+GG T NPTYR +
Sbjct: 35 SMTNVPDGMEIAIFAMGCFWGVERLFWQLPGVYSTAAGYTGGYTPNPTYREV 86

>pdb|2IEM|A Chain A, Solution Structure Of An Oxidized Form (Cys51-Cys198) Of E. Coli Methionine Sulfoxide Reductase A (Msra) Length = 211

Iteration: 1
 Score = 57.4 bits (137), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 25/52 (48%), Positives = 31/52 (59%)
Query: 6  SQTNGQNNTKTAVLAMGCFWAPDGLFGTTKGVLRTKVGYSGGTTENPTYRNI 57
          S TN  +  + A+ AMGCFW  + LF    GV  T  GY+GG T NPTYR +
Sbjct: 34 SMTNVPDGMEIAIFAMGCFWGVERLFWQLPGVYSTAAGYTGGYTPNPTYREV 85

>pdb|1FVA|A Chain A, Crystal Structure Of Bovine Methionine Sulfoxide Reductase Length = 217

Iteration: 1
 Score = 55.1 bits (131), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 23/46 (50%), Positives = 30/46 (65%)
Query: 12 NNTKTAVLAMGCFWAPDGLFGTTKGVLRTKVGYSGGTTENPTYRNI 57
            T+ AV  MGCFW  +  F T KGV  T+VG++GG T NPTY+ +
Sbjct: 49 EGTQMAVFGMGCFWGAERKFWTLKGVYSTQVGFAGGYTPNPTYKEV 94

>pdb|2L90|A Chain A, Solution Structure Of Murine Myristoylated Msra Length = 212

Iteration: 1
 Score = 53.9 bits (128), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 22/46 (47%), Positives = 29/46 (63%)
Query: 12 NNTKTAVLAMGCFWAPDGLFGTTKGVLRTKVGYSGGTTENPTYRNI 57
            T+ AV  MGCFW  +  F   KGV  T+VG++GG T NPTY+ +
Sbjct: 40 EGTQMAVFGMGCFWGAERKFWVLKGVYSTQVGFAGGHTRNPTYKEV 85

>pdb|4GWB|A Chain A, Crystal Structure Of Putative Peptide Methionine Sulfoxide Reductase From Sinorhizobium Meliloti 1021 Length = 168

Iteration: 1
 Score = 53.5 bits (127), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 24/43 (55%), Positives = 27/43 (62%)
Query: 14 TKTAVLAMGCFWAPDGLFGTTKGVLRTKVGYSGGTTENPTYRN 56
          TK AVLA GCFW    L     GV+ T+VGY+GG   N TYRN
Sbjct: 2  TKRAVLAGGCFWGXQDLIRKLPGVIETRVGYTGGDVPNATYRN 44

>pdb|1FF3|A Chain A, Structure Of The Peptide Methionine Sulfoxide Reductase From Escherichia Coli Length = 211

Iteration: 1
 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 24/52 (46%), Positives = 30/52 (57%)
Query: 6  SQTNGQNNTKTAVLAMGCFWAPDGLFGTTKGVLRTKVGYSGGTTENPTYRNI 57
          S TN  +  + A+ AMG FW  + LF    GV  T  GY+GG T NPTYR +
Sbjct: 34 SMTNVPDGMEIAIFAMGXFWGVERLFWQLPGVYSTAAGYTGGYTPNPTYREV 85

>pdb|1FVG|A Chain A, Crystal Structure Of Bovine Peptide Methionine Sulfoxide Reductase Length = 199

Iteration: 1
 Score = 52.8 bits (125), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 22/46 (47%), Positives = 29/46 (63%)
Query: 12 NNTKTAVLAMGCFWAPDGLFGTTKGVLRTKVGYSGGTTENPTYRNI 57
            T+ AV   GCFW  +  F T KGV  T+VG++GG T NPTY+ +
Sbjct: 41 EGTQXAVFGXGCFWGAERKFWTLKGVYSTQVGFAGGYTPNPTYKEV 86

>pdb|1NWA|A Chain A, Structure Of Mycobacterium Tuberculosis Methionine Sulfoxide Reductase A In Complex With Protein-Bound Methionine Length = 203

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 22/42 (52%), Positives = 26/42 (61%)
Query: 15 KTAVLAMGCFWAPDGLFGTTKGVLRTKVGYSGGTTENPTYRN 56
          + A+LA GCFW    L     GV+ T+VGYSGG   N TYRN
Sbjct: 26 QKAILAGGCFWGLQDLIRNQPGVVSTRVGYSGGNIPNATYRN 67

>pdb|3BQE|A Chain A, Structure Of The Central Domain (Msra) Of Neisseria Meningitidis Pilb (Reduced Form) Length = 194

Iteration: 1
 Score = 47.0 bits (110), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 19/45 (42%), Positives = 27/45 (60%)
Query: 13 NTKTAVLAMGCFWAPDGLFGTTKGVLRTKVGYSGGTTENPTYRNI 57
          NT+T  LA GCFW  +  F    GV+    GY+ G T+NP+Y ++
Sbjct: 2  NTRTIYLAGGCFWGLEAYFQRIDGVVDAVSGYANGNTKNPSYEDV 46

>pdb|3BQH|A Chain A, Structure Of The Central Domain (Msra) Of Neisseria Meningitidis Pilb (Oxidized Form) Length = 193

Iteration: 1
 Score = 47.0 bits (110), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 19/45 (42%), Positives = 27/45 (60%)
Query: 13 NTKTAVLAMGCFWAPDGLFGTTKGVLRTKVGYSGGTTENPTYRNI 57
          NT+T  LA GCFW  +  F    GV+    GY+ G T+NP+Y ++
Sbjct: 1  NTRTIYLAGGCFWGLEAYFQRIDGVVDAVSGYANGNTKNPSYEDV 45

>pdb|2J89|A Chain A, Functional And Structural Aspects Of Poplar Cytosolic And Plastidial Type A Methionine Sulfoxide Reductases Length = 261

Iteration: 1
 Score = 44.7 bits (104), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 17  AVLAMGCFWAPDGLFGTTKGVLRTKVGYSGGTTENPTYRNIPAFT--EQEVVVVEY 70
           A    GCFW  +  F    GV +T+VGY+ G   NPTY ++   T    EVV V+Y
Sbjct: 97  AQFGAGCFWGVELAFQRVPGVTKTEVGYTQGLLHNPTYEDVXTGTTNHNEVVRVQY 152

>pdb|3BQF|A Chain A, Structure Of The Central Domain (Msra) Of Neisseria Meningitidis Pilb (Complex With A Substrate) Length = 194

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 18/45 (40%), Positives = 26/45 (57%)
Query: 13 NTKTAVLAMGCFWAPDGLFGTTKGVLRTKVGYSGGTTENPTYRNI 57
          NT+T  LA G FW  +  F    GV+    GY+ G T+NP+Y ++
Sbjct: 2  NTRTIYLAGGSFWGLEAYFQRIDGVVDAVSGYANGNTKNPSYEDV 46

>pdb|3BQG|A Chain A, Structure Of The Central Domain (msra) Of Neisseria Meningitidis Pilb (sulfenic Acid Form) Length = 194

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 18/45 (40%), Positives = 26/45 (57%)
Query: 13 NTKTAVLAMGCFWAPDGLFGTTKGVLRTKVGYSGGTTENPTYRNI 57
          NT+T  LA G FW  +  F    GV+    GY+ G T+NP+Y ++
Sbjct: 2  NTRTIYLAGGXFWGLEAYFQRIDGVVDAVSGYANGNTKNPSYEDV 46

>pdb|3E0M|A Chain A, Crystal Structure Of Fusion Protein Of Msra And Msrb Length = 313

Iteration: 1
 Score = 41.2 bits (95), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 25/52 (48%)
Query: 19 LAMGCFWAPDGLFGTTKGVLRTKVGYSGGTTENPTYRNIPAFTEQEVVVVEY 70
          LA GCFW  +  F    GVL T VGY+ G  E   Y+ +      E V V Y
Sbjct: 7  LAGGCFWGLEEYFSRISGVLETSVGYANGQVETTNYQLLKETDHAETVQVIY 58
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	213
1nwa_A	203	Peptide methionine sulfoxide reductase MSRA; oxido	1e-17
3bqh_A	193	PILB, peptide methionine sulfoxide reductase MSRA/	4e-17
1fvg_A	199	Peptide methionine sulfoxide reductase; oxidoreduc	2e-16
3e0m_A	313	Peptide methionine sulfoxide reductase MSRA/MSRB 1	2e-16
2j89_A	261	Methionine sulfoxide reductase A; MSRA, poplar, ox	4e-16
1ff3_A	211	Peptide methionine sulfoxide reductase; alpha beta	4e-14
3pim_A	187	Peptide methionine sulfoxide reductase; methionine	4e-12

>1nwa_A Peptide methionine sulfoxide reductase MSRA; oxidoreductase, product complex, structural genomics, PSI, protein structure initiative; 1.50A {Mycobacterium tuberculosis} SCOP: d.58.28.1 Length = 203

 Score = 76.9 bits (190), Expect = 1e-17
 Identities = 25/67 (37%), Positives = 33/67 (49%), Gaps = 2/67 (2%)

Query: 4  TMSQTNGQNNTKTAVLAMGCFWAPDGLFGTTKGVLRTKVGYSGGTTENPTYRNIPAFTEQ 63
             +     + + A+LA GCFW    L     GV+ T+VGYSGG   N TYRN    T  
Sbjct: 15 GHIEGRHMTSNQKAILAGGCFWGLQDLIRNQPGVVSTRVGYSGGNIPNATYRNHG--THA 72

Query: 64 EVVVVEY 70
          E V + +
Sbjct: 73 EAVEIIF 79

>3bqh_A PILB, peptide methionine sulfoxide reductase MSRA/MSRB; methionine sulfoxide reductase A, oxidized form, elect transport; 1.95A {Neisseria meningitidis} PDB: 3bqe_A 3bqf_A* 3bqg_A Length = 193

 Score = 74.9 bits (185), Expect = 4e-17
 Identities = 23/62 (37%), Positives = 31/62 (50%), Gaps = 6/62 (9%)

Query: 13 NTKTAVLAMGCFWAPDGLFGTTKGVLRTKVGYSGGTTENPTYRNIPAFTEQ----EVVVV 68
          NT+T  LA GCFW  +  F    GV+    GY+ G T+NP+Y ++          E V V
Sbjct: 1  NTRTIYLAGGCFWGLEAYFQRIDGVVDAVSGYANGNTKNPSYEDV--SYRHTGHAETVKV 58

Query: 69 EY 70
           Y
Sbjct: 59 TY 60

>1fvg_A Peptide methionine sulfoxide reductase; oxidoreductase; 1.60A {Bos taurus} SCOP: d.58.28.1 PDB: 1fva_A 2l90_A* Length = 199

 Score = 73.4 bits (181), Expect = 2e-16
 Identities = 27/63 (42%), Positives = 37/63 (58%), Gaps = 6/63 (9%)

Query: 12  NNTKTAVLAMGCFWAPDGLFGTTKGVLRTKVGYSGGTTENPTYRNIPAFTEQ----EVVV 67
             T+ AV  MGCFW  +  F T KGV  T+VG++GG T NPTY+ +   + +    EVV 
Sbjct: 41  EGTQMAVFGMGCFWGAERKFWTLKGVYSTQVGFAGGYTPNPTYKEV--CSGKTGHAEVVR 98

Query: 68  VEY 70
           V +
Sbjct: 99  VVF 101

>3e0m_A Peptide methionine sulfoxide reductase MSRA/MSRB 1; fusion, msrab, linker, hinge, cell membrane, membrane, multifunctional enzyme, oxidoreductase; 2.40A {Streptococcus pneumoniae} Length = 313

 Score = 75.1 bits (185), Expect = 2e-16
 Identities = 21/58 (36%), Positives = 26/58 (44%)

Query: 13 NTKTAVLAMGCFWAPDGLFGTTKGVLRTKVGYSGGTTENPTYRNIPAFTEQEVVVVEY 70
          +     LA GCFW  +  F    GVL T VGY+ G  E   Y+ +      E V V Y
Sbjct: 1  HMAEIYLAGGCFWGLEEYFSRISGVLETSVGYANGQVETTNYQLLKETDHAETVQVIY 58

>2j89_A Methionine sulfoxide reductase A; MSRA, poplar, oxidoreductase; 1.7A {Populus trichocarpa} Length = 261

 Score = 73.6 bits (181), Expect = 4e-16
 Identities = 23/67 (34%), Positives = 29/67 (43%), Gaps = 16/67 (23%)

Query: 13  NTKTAVLAMGCFWAPDGLFGTTKGVLRTKVGYSGGTTENPTYRNIPAFTEQ--------- 63
             + A    GCFW  +  F    GV +T+VGY+ G   NPTY       E          
Sbjct: 93  GQQFAQFGAGCFWGVELAFQRVPGVTKTEVGYTQGLLHNPTY-------EDVCTGTTNHN 145

Query: 64  EVVVVEY 70
           EVV V+Y
Sbjct: 146 EVVRVQY 152

>1ff3_A Peptide methionine sulfoxide reductase; alpha beta roll, PMSR, MSRA, oxidoreductase; 1.90A {Escherichia coli} SCOP: d.58.28.1 PDB: 2gt3_A 2iem_A Length = 211

 Score = 67.3 bits (165), Expect = 4e-14
 Identities = 24/63 (38%), Positives = 32/63 (50%), Gaps = 6/63 (9%)

Query: 12  NNTKTAVLAMGCFWAPDGLFGTTKGVLRTKVGYSGGTTENPTYRNIPAFTEQ----EVVV 67
           +  + A+ AMG FW  + LF    GV  T  GY+GG T NPTYR +   +      E V 
Sbjct: 40  DGMEIAIFAMGXFWGVERLFWQLPGVYSTAAGYTGGYTPNPTYREV--CSGDTGHAEAVR 97

Query: 68  VEY 70
           + Y
Sbjct: 98  IVY 100

>3pim_A Peptide methionine sulfoxide reductase; methionine-S-sulfoxide reductase, oxidoreductase; 1.90A {Saccharomyces cerevisiae} PDB: 3pil_A 3pin_B Length = 187

 Score = 61.5 bits (150), Expect = 4e-12
 Identities = 18/80 (22%), Positives = 31/80 (38%), Gaps = 12/80 (15%)

Query: 1  MAKTMSQTNGQNNTKTAVLAMGCFWAPDGLFG--TTKGVLRTKVGYSGGTTENPTYRNIP 58
          ++KT+         K   LA GCFW  + ++       ++  KVGY+ G        +  
Sbjct: 8  ISKTIKYDP--AKDKLITLACGCFWGTEHMYRKYLNDRIVDCKVGYANGEESKKDSPSSV 65

Query: 59 AFTE--------QEVVVVEY 70
          ++           EV+ V Y
Sbjct: 66 SYKRVCGGDTDFAEVLQVSY 85

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	213
4gwb_A	168	Peptide methionine sulfoxide reductase MSRA 3; str	100.0
3bqh_A	193	PILB, peptide methionine sulfoxide reductase MSRA/	100.0
1fvg_A	199	Peptide methionine sulfoxide reductase; oxidoreduc	100.0
1ff3_A	211	Peptide methionine sulfoxide reductase; alpha beta	100.0
3pim_A	187	Peptide methionine sulfoxide reductase; methionine	100.0
2j89_A	261	Methionine sulfoxide reductase A; MSRA, poplar, ox	100.0
1nwa_A	203	Peptide methionine sulfoxide reductase MSRA; oxido	100.0
3e0m_A	313	Peptide methionine sulfoxide reductase MSRA/MSRB 1	100.0
3dxs_X	74	Copper-transporting ATPase RAN1; CXXC motif, ferre	87.12
1y3j_A	77	Copper-transporting ATPase 1; ferrodoxin-like fold	84.35
1cpz_A	68	Protein (COPZ); copper chaperone, metal transport,	84.34
1osd_A	72	MERP, hypothetical protein MERP; mercury resistanc	84.06
1p6t_A	151	Potential copper-transporting ATPase; COPA, P-type	83.94
1yjr_A	75	Copper-transporting ATPase 1; metallochaperone, pr	82.68
2ldi_A	71	Zinc-transporting ATPase; metal homeostasis, metal	82.24
2l3m_A	71	Copper-ION-binding protein; structural genomics, c	81.62
1q8l_A	84	Copper-transporting ATPase 1; metal binding protei	80.62
2g9o_A	90	Copper-transporting ATPase 1; menkes disease, solu	80.54

>4gwb_A Peptide methionine sulfoxide reductase MSRA 3; structural genomics, protein structure initiative, nysgrc, R PSI-biology; 1.20A {Sinorhizobium meliloti}

Probab=100.00  E-value=7.5e-52  Score=344.09  Aligned_cols=131  Identities=24%  Similarity=0.380  Sum_probs=118.7

Q ss_pred             ccEEEEecCCcchhhhhccCCCCeEEEEeeecCCCCCCCcccccccc-------cccchhhHHHHHhhcc----ccCCcc
Q psy9124          14 TKTAVLAMGCFWAPDGLFGTTKGVLRTKVGYSGGTTENPTYRNIPAF-------TEQEVVVVEYCLDLFE----PSGHGK   82 (213)
Q Consensus        14 ~~~a~fagGCFWg~E~~F~~~~GV~~t~vGYagG~~~nPtYe~V~~~-------~~~e~Vs~e~LL~iF~----PT~~~r   82 (213)
                      +++|+||||||||+|++|+++|||++|+|||+||+++||||++||+|       |||++|||++||++||    ||+.||
T Consensus         2 te~A~fagGCFWg~E~~f~~l~GV~~t~~GYagG~~~nPtY~~v~~HaE~V~V~yDp~~isy~~LL~~F~~~hDPT~~nr   81 (168)
T 4gwb_A            2 TKRAVLAGGCFWGMQDLIRKLPGVIETRVGYTGGDVPNATYRNHGTHAEGIEIIFDPERISYRRILELFFQIHDPTTKDR   81 (168)
T ss_dssp             CEEEEEEESCHHHHHHHHTTSTTEEEEEEEEESSSCTTCBTTBCTTCEEEEEEEECTTTCCHHHHHHHHHHHSCTTSTTE
T ss_pred             ceEEEEEccCccchHHHHhcCCCeEEEEEEcCCCcCCCCcccccCceEEEEEEEECCCCCCHHHHHHHHHhhcCCcCcCC
Confidence            47899999999999999999999999999999999999999999987       6999999999999999    999999


Q ss_pred             c----cccccccccccCcccccCCchhhccc-cccccccccCC--ceEEeecCCCCCCchhhccC---CCCCC-ccc
Q psy9124          83 R----RRRRDSNSSNMTQTFTYASHPHVHHH-DNHDNDTQYTK--FQENIEYTVLMPGDLYRKTI---SMESS-CST  148 (213)
Q Consensus        83 q----G~QYRSaIy~~~~eq~~~q~~~a~~~-~~~~~~~~~~k--vTEi~p~~~F~pAE~YHQ~Y---~p~~y-C~~  148 (213)
                      |    |+|||||||++|++    |++.|+++ +....+..+.+  +|||+|+++|||||+|||+|   ||++| ||.
T Consensus        82 Qg~D~G~QYRS~If~~~~~----Q~~~a~~~~~~l~~~~~~~~~IvTei~p~~~Fy~AE~yHQ~Yl~knP~~y~Ch~  154 (168)
T 4gwb_A           82 QGNDIGTSYRSAIYYVDDE----QKRIAQETIADVEASGLWPGKVVTEVEPVRDFWEAEPEHQNYLERYPNGYTCHF  154 (168)
T ss_dssp             ETTEESGGGCEEEEESSHH----HHHHHHHHHHHHHHHTCSSSCCCCEEEECCCEEECCGGGTTHHHHSTTSCCCCC
T ss_pred             CCCCCCcCceEEEecCCHH----HHHHHHHHHHHHHHcccCCCCEEEEEEecCCeeECHHHHHHHHHhCCCCCccCc
Confidence            9    99999999999995    78888884 23344555654  99999999999999999999   99877 885

>3bqh_A PILB, peptide methionine sulfoxide reductase MSRA/MSRB; methionine sulfoxide reductase A, oxidized form, elect transport; 1.95A {Neisseria meningitidis} PDB: 3bqe_A 3bqf_A* 3bqg_A

Probab=100.00  E-value=1.3e-51  Score=349.14  Aligned_cols=134  Identities=22%  Similarity=0.396  Sum_probs=119.1

Q ss_pred             CccEEEEecCCcchhhhhccCCCCeEEEEeeecCCCCCCCcccccccc-----------cccchhhHHHHHhhcc----c
Q psy9124          13 NTKTAVLAMGCFWAPDGLFGTTKGVLRTKVGYSGGTTENPTYRNIPAF-----------TEQEVVVVEYCLDLFE----P   77 (213)
Q Consensus        13 ~~~~a~fagGCFWg~E~~F~~~~GV~~t~vGYagG~~~nPtYe~V~~~-----------~~~e~Vs~e~LL~iF~----P   77 (213)
                      ++++|+||||||||+|++|+++|||++|+|||+||.++||||++||++           |||++|||++||++||    |
T Consensus         1 ~~~~a~fagGCFWg~E~~F~~~~GV~~t~vGYagG~~~nPtY~~Vc~g~tGHaEaV~V~yDp~~isy~~LL~~f~~~hDP   80 (193)
T 3bqh_A            1 NTRTIYLAGGCFWGLEAYFQRIDGVVDAVSGYANGNTKNPSYEDVSYRHTGHAETVKVTYDADKLSLDDILQYFFRVVDP   80 (193)
T ss_dssp             CEEEEEEEESCHHHHHHHHHTSTTEEEEEEEEESCSSSSCCHHHHHHSCCCCEEEEEEEEETTTCCHHHHHHHHHHHSCC
T ss_pred             CccEEEEecCCeeehHHHHhcCCCEEEEEEeccCCcCCCCChheeecCCCCCeEEEEEEECCCcCCHHHHHHHHHHhcCC
Confidence            468999999999999999999999999999999999999999999875           5899999999999999    9


Q ss_pred             cCCccc----cccccccccccCcccccCCchhhccccccccccccCC--ceEEeecCCCCCCchhhccC---CCCCCccc
Q psy9124          78 SGHGKR----RRRRDSNSSNMTQTFTYASHPHVHHHDNHDNDTQYTK--FQENIEYTVLMPGDLYRKTI---SMESSCST  148 (213)
Q Consensus        78 T~~~rq----G~QYRSaIy~~~~eq~~~q~~~a~~~~~~~~~~~~~k--vTEi~p~~~F~pAE~YHQ~Y---~p~~yC~~  148 (213)
                      |+.|||    |+||||+|||+|++    |++.|+++ +...+..|.+  +|||+|+++|||||+|||+|   ||.+||+.
T Consensus        81 T~~nrQG~D~G~QYRS~If~~~~~----Q~~~A~~~-~~~~~~~~~~~IvTeI~p~~~Fy~AE~yHQ~Yl~knp~~Yc~~  155 (193)
T 3bqh_A           81 TSLNKQGNDTGTQYRSGVYYTDPA----EKAVIAAA-LKREQQKYQLPLVVENEPLKNFYDAEEYHQDYLIKNPNGYCHI  155 (193)
T ss_dssp             BGGGSSSCCTTCTTCEEEEESSHH----HHHHHHHH-HHHHHTTCSSCBCCEEEECCCEEECCGGGTTHHHHCTTCCC--
T ss_pred             CCCCCCCCCcCccceeeeecCCHH----HHHHHHHH-HHHHHHHhCCCeEEEEecCCCeeEcHHHHHHHHHhCCCCceee
Confidence            999998    99999999999995    78888885 3344455766  99999999999999999999   99999987


Q ss_pred             hhh
Q psy9124         149 FLL  151 (213)
Q Consensus       149 ~l~  151 (213)
                      .+.
T Consensus       156 ~~~  158 (193)
T 3bqh_A          156 DIR  158 (193)
T ss_dssp             -CC
T ss_pred             ecc
Confidence            554

>1fvg_A Peptide methionine sulfoxide reductase; oxidoreductase; 1.60A {Bos taurus} SCOP: d.58.28.1 PDB: 1fva_A 2l90_A*

Probab=100.00  E-value=7.5e-51  Score=345.71  Aligned_cols=133  Identities=25%  Similarity=0.381  Sum_probs=118.2

Q ss_pred             CCCCccEEEEecCCcchhhhhccCCCCeEEEEeeecCCCCCCCcccccccc-----------cccchhhHHHHHhhcc--
Q psy9124          10 GQNNTKTAVLAMGCFWAPDGLFGTTKGVLRTKVGYSGGTTENPTYRNIPAF-----------TEQEVVVVEYCLDLFE--   76 (213)
Q Consensus        10 ~~~~~~~a~fagGCFWg~E~~F~~~~GV~~t~vGYagG~~~nPtYe~V~~~-----------~~~e~Vs~e~LL~iF~--   76 (213)
                      .++++++|+||||||||+|++|+++|||++|+|||+||.++||||++||++           |||++|||++||++||  
T Consensus        39 ~~~~~~~a~fagGCFWg~E~~F~~l~GV~~t~vGYagG~~~nPtY~~Vcsg~TGHaEaV~V~yDp~~isy~~LL~~F~~~  118 (199)
T 1fvg_A           39 FPEGTQMAVFGMGCFWGAERKFWTLKGVYSTQVGFAGGYTPNPTYKEVCSGKTGHAEVVRVVFQPEHISFEELLKVFWEN  118 (199)
T ss_dssp             CCTTCEEEEEEESSHHHHHHHHHTSTTEEEEEEEEESSSCSSCCHHHHHHTCSCCEEEEEEEECTTTSCHHHHHHHHHHT
T ss_pred             CCCCceEEEEecCCeeeeHHHHhhCCCeEEEEeeccCCCCCCCChhheecCCCCCeEEEEEEECCCcCCHHHHHHHHHHh
Confidence            457899999999999999999999999999999999999999999999975           5899999999999999  


Q ss_pred             --ccCCccc----cccccccccccCcccccCCchhhccccccccc-----cccCC-ceEEeecCCCCCCchhhccC---C
Q psy9124          77 --PSGHGKR----RRRRDSNSSNMTQTFTYASHPHVHHHDNHDND-----TQYTK-FQENIEYTVLMPGDLYRKTI---S  141 (213)
Q Consensus        77 --PT~~~rq----G~QYRSaIy~~~~eq~~~q~~~a~~~~~~~~~-----~~~~k-vTEi~p~~~F~pAE~YHQ~Y---~  141 (213)
                        ||+.|||    |+||||+|||+|++    |+++|+++ +...+     ..+++ +|||+|++.|||||+|||+|   |
T Consensus       119 hDPT~~nrQG~D~G~QYRS~If~~~~~----Q~~~A~~~-~~~~q~~~~~~g~~~IvTeI~p~~~Fy~AE~yHQ~Yl~kn  193 (199)
T 1fvg_A          119 HDPTQGMRQGNDHGSQYRSAIYPTSAE----HVGAALKS-KEDYQKVLSEHGFGLITTDIREGQTFYYAEDYHQQYLSKD  193 (199)
T ss_dssp             SCTTCSSEETTEESGGGCEEECCSSHH----HHHHHHHH-HHHHHHHHHHTTCCCCCCEECSSCCCEECCGGGTTHHHHS
T ss_pred             cCCcccCCCCCCCChhheeccccCCHH----HHHHHHHH-HHHHHHHHhhcCCCCeEEEEeeCCCeeECHHHHHHHHHhC
Confidence              9999998    99999999999995    78888874 21111     22555 99999999999999999999   9


Q ss_pred             CCCCcc
Q psy9124         142 MESSCS  147 (213)
Q Consensus       142 p~~yC~  147 (213)
                      |.+||+
T Consensus       194 P~~Yc~  199 (199)
T 1fvg_A          194 PDGYCG  199 (199)
T ss_dssp             TTCCC-
T ss_pred             CCCCCC
Confidence            999996

>1ff3_A Peptide methionine sulfoxide reductase; alpha beta roll, PMSR, MSRA, oxidoreductase; 1.90A {Escherichia coli} SCOP: d.58.28.1 PDB: 2gt3_A 2iem_A

Probab=100.00  E-value=2.5e-50  Score=345.14  Aligned_cols=135  Identities=23%  Similarity=0.325  Sum_probs=119.9

Q ss_pred             CCCCccEEEEecCCcchhhhhccCCCCeEEEEeeecCCCCCCCcccccccc-----------cccchhhHHHHHhhcc--
Q psy9124          10 GQNNTKTAVLAMGCFWAPDGLFGTTKGVLRTKVGYSGGTTENPTYRNIPAF-----------TEQEVVVVEYCLDLFE--   76 (213)
Q Consensus        10 ~~~~~~~a~fagGCFWg~E~~F~~~~GV~~t~vGYagG~~~nPtYe~V~~~-----------~~~e~Vs~e~LL~iF~--   76 (213)
                      .++++++|+||||||||+|++|+++|||++|+|||+||+++||||++||++           |||++|||++||++||  
T Consensus        38 ~~~~~~~a~fagGCFWg~E~~F~~l~GV~~t~vGYaGG~~~nPtY~~VcsG~TGHaEaV~V~yDp~~isy~~LL~~F~~~  117 (211)
T 1ff3_A           38 VPDGMEIAIFAMGXFWGVERLFWQLPGVYSTAAGYTGGYTPNPTYREVCSGDTGHAEAVRIVYDPSVISYEQLLQVFWEN  117 (211)
T ss_dssp             CCTTCEEEEEECSSHHHHHHHHHTSTTEEEEEEEEESSSCSSCCHHHHHHTCSCCEEEEEEEECTTTSCHHHHHHHHHHS
T ss_pred             CCCCceEEEEecCCeEEehhhHhcCCCeEEEEeeecCCCCCCCChhhccCCCCCceEEEEEEECCCcCCHHHHHHHHHHh
Confidence            467899999999999999999999999999999999999999999999975           5899999999999999  


Q ss_pred             --ccCCccc----cccccccccccCcccccCCchhhccccc-ccc---ccccCC--ceEEeecCCCCCCchhhccC---C
Q psy9124          77 --PSGHGKR----RRRRDSNSSNMTQTFTYASHPHVHHHDN-HDN---DTQYTK--FQENIEYTVLMPGDLYRKTI---S  141 (213)
Q Consensus        77 --PT~~~rq----G~QYRSaIy~~~~eq~~~q~~~a~~~~~-~~~---~~~~~k--vTEi~p~~~F~pAE~YHQ~Y---~  141 (213)
                        ||+.|||    |+||||+|||+|++    |++.|+++.. ...   ...|++  +|||+|++.|||||+|||+|   |
T Consensus       118 hDPT~~nrQG~D~GtQYRSaIf~~~~e----Q~~~A~~~~~~~q~~l~~~g~~~~IvTeI~p~~~Fy~AE~YHQ~Yl~kn  193 (211)
T 1ff3_A          118 HDPAQGMRQGNDHGTQYRSAIYPLTPE----QDAAARASLERFQAAMLAADDDRHITTEIANATPFYYAEDDHQQYLHKN  193 (211)
T ss_dssp             SCTTSSSEETTEESGGGCCEECCSSHH----HHHHHHHHHHHHHHHHHHTTCCCCCCCEECCCCCEEECCGGGTTHHHHS
T ss_pred             cCCcccCCCCCCcCccceeeeecCCHH----HHHHHHHHHHHHHHHHhhcccCCceEEEEeeCCCceeChHHHHHHHHHC
Confidence              8999998    99999999999995    7888887411 111   123654  89999999999999999999   9


Q ss_pred             CCCCccc
Q psy9124         142 MESSCST  148 (213)
Q Consensus       142 p~~yC~~  148 (213)
                      |.+||+.
T Consensus       194 P~~Yc~~  200 (211)
T 1ff3_A          194 PYGYCGI  200 (211)
T ss_dssp             CCCCCCC
T ss_pred             CCCCcCc
Confidence            9999984

>3pim_A Peptide methionine sulfoxide reductase; methionine-S-sulfoxide reductase, oxidoreductase; 1.90A {Saccharomyces cerevisiae} PDB: 3pil_A 3pin_B

Probab=100.00  E-value=1.3e-50  Score=341.41  Aligned_cols=133  Identities=14%  Similarity=0.295  Sum_probs=115.5

Q ss_pred             CCCCccEEEEecCCcchhhhhccCC--CCeEEEEeeecCC--CCCC----Ccccccccc-----------cccchhhHHH
Q psy9124          10 GQNNTKTAVLAMGCFWAPDGLFGTT--KGVLRTKVGYSGG--TTEN----PTYRNIPAF-----------TEQEVVVVEY   70 (213)
Q Consensus        10 ~~~~~~~a~fagGCFWg~E~~F~~~--~GV~~t~vGYagG--~~~n----PtYe~V~~~-----------~~~e~Vs~e~   70 (213)
                      .|+++++|+||||||||+|++|+++  |||++|+|||+||  .++|    |||++||++           |||++|||++
T Consensus        15 ~p~~~~~a~fagGCFWg~E~~F~~l~g~GV~~t~~GYagG~~~~~n~~~~PtY~~Vc~g~TGHaEaV~V~yDp~~isy~~   94 (187)
T 3pim_A           15 DPAKDKLITLACGCFWGTEHMYRKYLNDRIVDCKVGYANGEESKKDSPSSVSYKRVCGGDTDFAEVLQVSYNPKVITLRE   94 (187)
T ss_dssp             CTTTCEEEEEESSCHHHHHHHHHHHHGGGSSEEEEEEEEECCC---------CSCBTTBCTTCEEEEEEEECTTTSCHHH
T ss_pred             CCCCCcEEEEecCCchhhHHHHHHhcCCCeEEEEeeecCCcccCCCCCCCCchhhhccCCCCCeEEEEEEECCccCCHHH
Confidence            4678999999999999999999999  9999999999999  9999    999999986           5899999999


Q ss_pred             HHhhcc----ccCCccc----cccccccccccCcccccCCchhhccccccccccccCC--ceEEeecCCCCCCchhhccC
Q psy9124          71 CLDLFE----PSGHGKR----RRRRDSNSSNMTQTFTYASHPHVHHHDNHDNDTQYTK--FQENIEYTVLMPGDLYRKTI  140 (213)
Q Consensus        71 LL~iF~----PT~~~rq----G~QYRSaIy~~~~eq~~~q~~~a~~~~~~~~~~~~~k--vTEi~p~~~F~pAE~YHQ~Y  140 (213)
                      ||++||    ||+.|||    |+||||||||+|++    |+++|+++ +...++.|.+  +|||+|+++|||||+|||+|
T Consensus        95 LL~~Ff~~hDPT~~nrQG~D~G~QYRS~Ify~~~~----Q~~~A~~~-~~~l~~~~~~~IvTeI~p~~~Fy~AE~yHQ~Y  169 (187)
T 3pim_A           95 LTDFFFRIHDPTTSNSQGPDKGTQYRSGLFAHSDA----DLKELAKI-KEEWQPKWGNKIATVIEPIKNFYDAEEYHQLY  169 (187)
T ss_dssp             HHHHHTTSSCCBTTCC-----CGGGCCEEEESSHH----HHHHHHHH-HHHHGGGGTTCBCCEEEEEEEEEEHHHHHHHH
T ss_pred             HHHHHHHhcCCCcCCCCCCCcCcccceeeEeCCHH----HHHHHHHH-HHHHHHHhCCCcEEEEeeCCCeeecHHHHHHH
Confidence            999999    9999998    99999999999995    78888885 4445556766  99999999999999999999


Q ss_pred             ---CCCCCcc
Q psy9124         141 ---SMESSCS  147 (213)
Q Consensus       141 ---~p~~yC~  147 (213)
                         ||.+||-
T Consensus       170 l~knP~~Ycc  179 (187)
T 3pim_A          170 LDKNPQGYAC  179 (187)
T ss_dssp             CTTCTTCTTC
T ss_pred             HHHCCCCCCC
Confidence               9999964

>2j89_A Methionine sulfoxide reductase A; MSRA, poplar, oxidoreductase; 1.7A {Populus trichocarpa}

Probab=100.00  E-value=4.9e-49  Score=344.53  Aligned_cols=134  Identities=18%  Similarity=0.313  Sum_probs=121.3

Q ss_pred             CCccEEEEecCCcchhhhhccCCCCeEEEEeeecCCCCCCCcccccccc-----------cccchhhHHHHHhhcc----
Q psy9124          12 NNTKTAVLAMGCFWAPDGLFGTTKGVLRTKVGYSGGTTENPTYRNIPAF-----------TEQEVVVVEYCLDLFE----   76 (213)
Q Consensus        12 ~~~~~a~fagGCFWg~E~~F~~~~GV~~t~vGYagG~~~nPtYe~V~~~-----------~~~e~Vs~e~LL~iF~----   76 (213)
                      +++++|+||||||||+|++|+++|||++|+|||+||.++||||++||++           |||++|+|++||++||    
T Consensus        92 ~~~e~a~fAgGCFWgvE~~F~~l~GV~~t~vGYaGG~t~nPTYeeVcsG~TGHaEaV~V~YDP~~ISy~~LL~~Fw~~hD  171 (261)
T 2j89_A           92 PGQQFAQFGAGCFWGVELAFQRVPGVTKTEVGYTQGLLHNPTYEDVCTGTTNHNEVVRVQYDPKECSFDTLIDVLWARHD  171 (261)
T ss_dssp             TTCEEEEEEESSHHHHHHHHHTSTTEEEEEEEEESSSCSSCCHHHHHTTCSCCEEEEEEEECTTTSCHHHHHHHHHHHSC
T ss_pred             CCCeEEEEecCCeeeeHHHHhhCCCeEEEEeeecCCCCCCCChhhcccCCCCCeEEEEEEECCCcCCHHHHHHHHHHhcC
Confidence            6899999999999999999999999999999999999999999999975           5899999999999999    


Q ss_pred             ccCCccc----cccccccccccCcccccCCchhhccccccccccccCC--ceEEeecCCCCCCchhhccC---CC-CCC-
Q psy9124          77 PSGHGKR----RRRRDSNSSNMTQTFTYASHPHVHHHDNHDNDTQYTK--FQENIEYTVLMPGDLYRKTI---SM-ESS-  145 (213)
Q Consensus        77 PT~~~rq----G~QYRSaIy~~~~eq~~~q~~~a~~~~~~~~~~~~~k--vTEi~p~~~F~pAE~YHQ~Y---~p-~~y-  145 (213)
                      ||+.|||    |+||||||||+|++    |+++|+++ +...++.+.+  +|||+|++.|||||+|||+|   || .+| 
T Consensus       172 PT~~nrQG~D~GtQYRSaIfy~~ee----Q~~~Ae~s-~~~~q~~~~~~IvTEI~p~~~Fy~AEdYHQ~Yl~Kn~~~gy~  246 (261)
T 2j89_A          172 PTTLNRQGNDVGTQYRSGIYYYTPE----QEKAAKES-LERQQKLLNRKIVTEILPAKKFYRAEEYHQQYLAKGGRFGFM  246 (261)
T ss_dssp             TTSTTEETTEESGGGCEEEEESSHH----HHHHHHHH-HHHHHTTCSSCCCCEEEECCCEEECCGGGTTTTTTTTTTSCC
T ss_pred             CcccCCCCCCCCccccccccCCCHH----HHHHHHHH-HHHHHHhcCCCcEEEEecCCCeeECHHHHHHHHHHCCCCCCc
Confidence            9999998    99999999999995    78888885 3444555665  99999999999999999999   77 588 


Q ss_pred             ------ccchh
Q psy9124         146 ------CSTFL  150 (213)
Q Consensus       146 ------C~~~l  150 (213)
                            |+..|
T Consensus       247 qsa~kgC~~~i  257 (261)
T 2j89_A          247 QSAEKGCNDPI  257 (261)
T ss_dssp             CCCCTTCCSCC
T ss_pred             ccccccCCCch
Confidence                  88755

>1nwa_A Peptide methionine sulfoxide reductase MSRA; oxidoreductase, product complex, structural genomics, PSI, protein structure initiative; 1.50A {Mycobacterium tuberculosis} SCOP: d.58.28.1

Probab=100.00  E-value=1.6e-48  Score=332.02  Aligned_cols=139  Identities=21%  Similarity=0.325  Sum_probs=120.2

Q ss_pred             CCccEEEEecCCcchhhhhccCCCCeEEEEeeecCCCCCCCcccc-------cccccccchhhHHHHHhhcc----ccCC
Q psy9124          12 NNTKTAVLAMGCFWAPDGLFGTTKGVLRTKVGYSGGTTENPTYRN-------IPAFTEQEVVVVEYCLDLFE----PSGH   80 (213)
Q Consensus        12 ~~~~~a~fagGCFWg~E~~F~~~~GV~~t~vGYagG~~~nPtYe~-------V~~~~~~e~Vs~e~LL~iF~----PT~~   80 (213)
                      ..+++|+||||||||+|++|+++|||++|+|||+||.++||||++       |...|||++|||++||++||    ||+.
T Consensus        23 ~~~~~a~fagGCFWg~E~~F~~l~GV~~t~vGYaGG~~~nPtYe~~G~HaEaV~V~yDp~~iSy~~LL~~Ff~~hDPT~~  102 (203)
T 1nwa_A           23 TSNQKAILAGGCFWGLQDLIRNQPGVVSTRVGYSGGNIPNATYRNHGTHAEAVEIIFDPTVTDYRTLLEFFFQIHDPTTK  102 (203)
T ss_dssp             TCCEEEEEEESCHHHHHHHHTTSTTEEEEEEEEESSSCSSCCSSCCTTCEEEEEEEECTTTCCHHHHHHHHHHHSCTTST
T ss_pred             CccceEEEecCCeeeeHHHHhcCCCeEEEEeeecCCCCCCCChhhcCCceEEEEEEECCCcCCHHHHHHHHHHhcCCccc
Confidence            346899999999999999999999999999999999999999986       23347999999999999999    9999


Q ss_pred             ccc----cccccccccccCcccccCCchhhccc-cccccccccCC--ceEEeecCCCCCCchhhccC---CCCCC-ccch
Q psy9124          81 GKR----RRRRDSNSSNMTQTFTYASHPHVHHH-DNHDNDTQYTK--FQENIEYTVLMPGDLYRKTI---SMESS-CSTF  149 (213)
Q Consensus        81 ~rq----G~QYRSaIy~~~~eq~~~q~~~a~~~-~~~~~~~~~~k--vTEi~p~~~F~pAE~YHQ~Y---~p~~y-C~~~  149 (213)
                      |||    |+||||||||+|++    |+++|+++ +....++.|.+  +|||+|+++|||||+|||+|   ||.+| |+. 
T Consensus       103 nrQG~D~GtQYRSaIfy~~~e----Q~~~A~~~~~~lq~~g~~~~~IvTeI~p~~~Fy~AE~YHQ~Yl~knP~~Y~c~~-  177 (203)
T 1nwa_A          103 DRQGNDRGTSYRSAIFYFDEQ----QKRIALDTIADVEASGLWPGKVVTEVSPAGDFWEAEPEHQDYLQRYPNGYTCHF-  177 (203)
T ss_dssp             TEETTEESGGGCEEEEESSHH----HHHHHHHHHHHHHHHCCSSSCCCCEEEECCCEEECCGGGTTHHHHSTTSCCCCC-
T ss_pred             CCCCCCCCccccccccCCCHH----HHHHHHHHHHHHHHhcCcCCCeEEEEecCCCEEEChHHHHHHHHhCCCCCcccc-
Confidence            999    99999999999995    78888885 22333345765  99999999999999999999   99999 754 


Q ss_pred             hhhhcc
Q psy9124         150 LLVSGV  155 (213)
Q Consensus       150 l~~s~~  155 (213)
                      +.+++.
T Consensus       178 ~~~~~~  183 (203)
T 1nwa_A          178 VRPGWR  183 (203)
T ss_dssp             CCTTSC
T ss_pred             cHHHHH
Confidence            666554

>3e0m_A Peptide methionine sulfoxide reductase MSRA/MSRB 1; fusion, msrab, linker, hinge, cell membrane, membrane, multifunctional enzyme, oxidoreductase; 2.40A {Streptococcus pneumoniae}

Probab=100.00  E-value=7.1e-48  Score=345.76  Aligned_cols=134  Identities=19%  Similarity=0.324  Sum_probs=120.9

Q ss_pred             CccEEEEecCCcchhhhhccCCCCeEEEEeeecCCCCCCCcccccccc---------cccchhhHHHHHhhcc----ccC
Q psy9124          13 NTKTAVLAMGCFWAPDGLFGTTKGVLRTKVGYSGGTTENPTYRNIPAF---------TEQEVVVVEYCLDLFE----PSG   79 (213)
Q Consensus        13 ~~~~a~fagGCFWg~E~~F~~~~GV~~t~vGYagG~~~nPtYe~V~~~---------~~~e~Vs~e~LL~iF~----PT~   79 (213)
                      +|++|+||||||||+|++|+++|||++|+|||+||+++||||++||..         |||++|||++||++||    ||+
T Consensus         1 ~~~~a~fagGCFWg~E~~F~~l~GV~~t~~GYagG~~~nPtY~~Vc~TGHaEaV~V~yDp~~isy~~LL~~f~~~hDPT~   80 (313)
T 3e0m_A            1 HMAEIYLAGGCFWGLEEYFSRISGVLETSVGYANGQVETTNYQLLKETDHAETVQVIYDEKEVSLREILLYYFRVIDPLS   80 (313)
T ss_dssp             -CEEEEEECSCHHHHHHHHTTSTTEEEEEEEEESCSSSCCCTTTHHHHTCEEEEEEEECTTTSCHHHHHHHHHHHSCTTC
T ss_pred             CccEEEEecCCchhhHHHHhhCCCeEEeecccCCCCCCCCChhhhccCCCeEEEEEEECCCcCCHHHHHHHHHhhcCCCc
Confidence            478999999999999999999999999999999999999999999821         5899999999999999    999


Q ss_pred             Cccc----cccccccccccCcccccCCchhhccccccccccccCC--ceEEeecCCCCCCchhhccC---CCCCCccchh
Q psy9124          80 HGKR----RRRRDSNSSNMTQTFTYASHPHVHHHDNHDNDTQYTK--FQENIEYTVLMPGDLYRKTI---SMESSCSTFL  150 (213)
Q Consensus        80 ~~rq----G~QYRSaIy~~~~eq~~~q~~~a~~~~~~~~~~~~~k--vTEi~p~~~F~pAE~YHQ~Y---~p~~yC~~~l  150 (213)
                      .|||    |+||||||||+|++    |+++|+++ +...++.|.+  +|||+|+++|||||+|||+|   ||.+||+..+
T Consensus        81 ~nrQG~D~G~QYRS~Ify~~~~----Q~~~a~~~-~~~~~~~~~~~IvTeI~p~~~Fy~AE~yHQ~Yl~knP~~Yc~~~~  155 (313)
T 3e0m_A           81 INQQGNDRGRQYRTGIYYQDEA----DLPAIYTV-VQEQERMLGRKIAVEVEQLRHYILAEDYHQDYLRKNPSGYCHIDV  155 (313)
T ss_dssp             SSEETTEESGGGCCEEEESCGG----GHHHHHHH-HHHHHHHHSSCCCCEEEECCCEEECCGGGTTHHHHSTTCCCCSCG
T ss_pred             CCCcCCCCccccceeEecCCHH----HHHHHHHH-HHHHHHhcCCCeEEEEeeccceeEcHHHHHHHHHHCCCcceeeec
Confidence            9999    99999999999994    78889885 3445556766  99999999999999999999   9999999765


Q ss_pred             h
Q psy9124         151 L  151 (213)
Q Consensus       151 ~  151 (213)
                      .
T Consensus       156 ~  156 (313)
T 3e0m_A          156 T  156 (313)
T ss_dssp             G
T ss_pred             c
Confidence            3

>3dxs_X Copper-transporting ATPase RAN1; CXXC motif, ferredoxin-like fold, ATP- binding, ethylene signaling pathway, hydrolase, ION transport; 1.70A {Arabidopsis thaliana} SCOP: d.58.17.0

Probab=87.12  E-value=0.2  Score=33.19  Aligned_cols=47  Identities=13%  Similarity=0.161  Sum_probs=35.0

Q ss_pred             cCCcchhhhhccCCCCeEEEEeeecCCCCCCCcccccccccccchhhHHHHHhhc
Q psy9124          21 MGCFWAPDGLFGTTKGVLRTKVGYSGGTTENPTYRNIPAFTEQEVVVVEYCLDLF   75 (213)
Q Consensus        21 gGCFWg~E~~F~~~~GV~~t~vGYagG~~~nPtYe~V~~~~~~e~Vs~e~LL~iF   75 (213)
                      ++|-|.+|..+.+++||.++.+-+..+.        +...+++..++.++|++..
T Consensus        14 ~~C~~~ie~~l~~~~gv~~~~v~~~~~~--------~~v~~~~~~~~~~~i~~~i   60 (74)
T 3dxs_X           14 AACSNSVEAALMNVNGVFKASVALLQNR--------ADVVFDPNLVKEEDIKEEI   60 (74)
T ss_dssp             HHHHHHHHHHHHTSTTEEEEEEEGGGTE--------EEEEECTTTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCCEEEEEEEecCCE--------EEEEECCCCCCHHHHHHHH
Confidence            5799999999999999999999888763        3334555556666665543

>1y3j_A Copper-transporting ATPase 1; ferrodoxin-like fold, beta-alpha-beta-BETA-alpha-beta structure, structural proteomics in europe, spine; NMR {Homo sapiens} PDB: 1y3k_A

Probab=84.35  E-value=0.7  Score=30.28  Aligned_cols=46  Identities=11%  Similarity=0.166  Sum_probs=32.0

Q ss_pred             cCCcchhhhhccCCCCeEEEEeeecCCCCCCCcccccccccccchhhHHHHHhh
Q psy9124          21 MGCFWAPDGLFGTTKGVLRTKVGYSGGTTENPTYRNIPAFTEQEVVVVEYCLDL   74 (213)
Q Consensus        21 gGCFWg~E~~F~~~~GV~~t~vGYagG~~~nPtYe~V~~~~~~e~Vs~e~LL~i   74 (213)
                      ++|-|.+|..+.+++||.++.+-+..+..        ...+++..++.+.|.+.
T Consensus        15 ~~C~~~ie~~l~~~~gv~~~~v~~~~~~~--------~v~~~~~~~~~~~i~~~   60 (77)
T 1y3j_A           15 ASCVANIERNLRREEGIYSILVALMAGKA--------EVRYNPAVIQPPMIAEF   60 (77)
T ss_dssp             CSHHHHHHHHHTTSSSEEECCCBTTTTBE--------EEEECTTTSCHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCCeEEEEEEecCCEE--------EEEECCCCCCHHHHHHH
Confidence            57999999999999999998887776532        22344444555554443

>1cpz_A Protein (COPZ); copper chaperone, metal transport, gene regulation; NMR {Enterococcus hirae} SCOP: d.58.17.1

Probab=84.34  E-value=0.56  Score=29.42  Aligned_cols=28  Identities=21%  Similarity=0.268  Sum_probs=24.9

Q ss_pred             cCCcchhhhhccCCCCeEEEEeeecCCC
Q psy9124          21 MGCFWAPDGLFGTTKGVLRTKVGYSGGT   48 (213)
Q Consensus        21 gGCFWg~E~~F~~~~GV~~t~vGYagG~   48 (213)
                      .+|-|.+|..+.+++||.++.+-+..+.
T Consensus        12 ~~C~~~i~~~l~~~~gv~~~~v~~~~~~   39 (68)
T 1cpz_A           12 NHCVARIEEAVGRISGVKKVKVQLKKEK   39 (68)
T ss_dssp             SSHHHHHHHHHHTSTTEEEEEEETTTTE
T ss_pred             HHHHHHHHHHHHcCCCeEEEEEEecCCE
Confidence            5899999999999999999999887663

>1osd_A MERP, hypothetical protein MERP; mercury resistance, metal binding protein, perisplasm, structural genomics; 2.00A {Cupriavidus metallidurans} SCOP: d.58.17.1 PDB: 1afi_A 1afj_A 2hqi_A

Probab=84.06  E-value=0.57  Score=29.84  Aligned_cols=46  Identities=11%  Similarity=0.120  Sum_probs=33.1

Q ss_pred             cCCcchhhhhccCCCCeEEEEeeecCCCCCCCcccccccccccchhhHHHHHhh
Q psy9124          21 MGCFWAPDGLFGTTKGVLRTKVGYSGGTTENPTYRNIPAFTEQEVVVVEYCLDL   74 (213)
Q Consensus        21 gGCFWg~E~~F~~~~GV~~t~vGYagG~~~nPtYe~V~~~~~~e~Vs~e~LL~i   74 (213)
                      .+|-|.+|..+.+++||.++.+-+..+..        ...+++..++.+.|.+.
T Consensus        15 ~~C~~~i~~~l~~~~gv~~~~v~~~~~~~--------~v~~~~~~~~~~~i~~~   60 (72)
T 1osd_A           15 SACPITVKKAISKVEGVSKVDVTFETRQA--------VVTFDDAKTSVQKLTKA   60 (72)
T ss_dssp             TTHHHHHHHHHHTSTTEEEEEEETTTTEE--------EEEEETTTCCHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCCeEEEEEEecCCEE--------EEEECCCCCCHHHHHHH
Confidence            58999999999999999999998877632        22344544555555443

>1p6t_A Potential copper-transporting ATPase; COPA, P-type ATPase, water-soluble region, beta-alpha-beta- beta-alpha-beta fold; NMR {Bacillus subtilis} SCOP: d.58.17.1 d.58.17.1 PDB: 2rml_A

Probab=83.94  E-value=0.44  Score=35.52  Aligned_cols=47  Identities=13%  Similarity=0.119  Sum_probs=36.8

Q ss_pred             cCCcchhhhhccCCCCeEEEEeeecCCCCCCCcccccccccccchhhHHHHHhhc
Q psy9124          21 MGCFWAPDGLFGTTKGVLRTKVGYSGGTTENPTYRNIPAFTEQEVVVVEYCLDLF   75 (213)
Q Consensus        21 gGCFWg~E~~F~~~~GV~~t~vGYagG~~~nPtYe~V~~~~~~e~Vs~e~LL~iF   75 (213)
                      ++|-|.+|..+.++|||.++.+-++.+.        +...++|..++.++|++..
T Consensus        86 ~~C~~~ie~~l~~~~gv~~~~v~~~~~~--------~~v~~~~~~~~~~~i~~~i  132 (151)
T 1p6t_A           86 AACANRIEKRLNKIEGVANAPVNFALET--------VTVEYNPKEASVSDLKEAV  132 (151)
T ss_dssp             SSHHHHHHHHHTTSSSEEECCEETTTTE--------EEEEECTTTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCCceEEEEEccCCE--------EEEEECCCCCCHHHHHHHH
Confidence            5899999999999999999999888763        3335666677777777654

>1yjr_A Copper-transporting ATPase 1; metallochaperone, protein-protein interaction, copper(I), metal homeostasis, structural proteomics in europe, spine; NMR {Homo sapiens} PDB: 1yjt_A 1yju_A 1yjv_A

Probab=82.68  E-value=0.91  Score=29.08  Aligned_cols=45  Identities=11%  Similarity=0.211  Sum_probs=32.1

Q ss_pred             cCCcchhhhhccCCCCeEEEEeeecCCCCCCCcccccccccccchhhHHHHHh
Q psy9124          21 MGCFWAPDGLFGTTKGVLRTKVGYSGGTTENPTYRNIPAFTEQEVVVVEYCLD   73 (213)
Q Consensus        21 gGCFWg~E~~F~~~~GV~~t~vGYagG~~~nPtYe~V~~~~~~e~Vs~e~LL~   73 (213)
                      ++|-|.+|..+.+++||.++.+-+..+..        ...+++..++.+.|.+
T Consensus        16 ~~c~~~i~~~l~~~~gv~~~~v~~~~~~~--------~v~~~~~~~~~~~i~~   60 (75)
T 1yjr_A           16 ASCVHKIESSLTKHRGILYCSVALATNKA--------HIKYDPEIIGPRDIIH   60 (75)
T ss_dssp             TTHHHHHHHHHTTSTTEEEEEEETTTTEE--------EEEECTTTTHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCEEEEEEEecCCEE--------EEEECCCCCCHHHHHH
Confidence            57999999999999999999998776532        2234444455555444

>2ldi_A Zinc-transporting ATPase; metal homeostasis, metallochaperones, hydrolase; NMR {Synechocystis SP}

Probab=82.24  E-value=0.99  Score=28.19  Aligned_cols=28  Identities=21%  Similarity=0.300  Sum_probs=24.8

Q ss_pred             cCCcchhhhhccCCCCeEEEEeeecCCC
Q psy9124          21 MGCFWAPDGLFGTTKGVLRTKVGYSGGT   48 (213)
Q Consensus        21 gGCFWg~E~~F~~~~GV~~t~vGYagG~   48 (213)
                      ++|-|.+|..+.+++||.+..+-+..+.
T Consensus        15 ~~C~~~i~~~l~~~~gv~~~~v~~~~~~   42 (71)
T 2ldi_A           15 AACASSIERALERLKGVAEASVTVATGR   42 (71)
T ss_dssp             SGGGHHHHTGGGGCSSEEEEEEETTTTE
T ss_pred             HHHHHHHHHHHhcCCCeeEEEEEecCCE
Confidence            5799999999999999999998887763

>2l3m_A Copper-ION-binding protein; structural genomics, center for structural genomics of infec diseases, csgid, metal binding protein; NMR {Bacillus anthracis}

Probab=81.62  E-value=0.5  Score=30.15  Aligned_cols=45  Identities=22%  Similarity=0.248  Sum_probs=32.1

Q ss_pred             cCCcchhhhhccCCCCeEEEEeeecCCCCCCCcccccccccccchhhHHHHHh
Q psy9124          21 MGCFWAPDGLFGTTKGVLRTKVGYSGGTTENPTYRNIPAFTEQEVVVVEYCLD   73 (213)
Q Consensus        21 gGCFWg~E~~F~~~~GV~~t~vGYagG~~~nPtYe~V~~~~~~e~Vs~e~LL~   73 (213)
                      .+|-|.+|..+.+++||.++.+-+..+..        ...+++..++.+.|.+
T Consensus        17 ~~C~~~i~~~l~~~~gv~~~~v~~~~~~~--------~v~~~~~~~~~~~i~~   61 (71)
T 2l3m_A           17 GHCVNAIESSVKELNGVEQVKVQLAEGTV--------EVTIDSSVVTLKDIVA   61 (71)
T ss_dssp             HHHHHHHHHHHHTSTTEEEEEEETTTTEE--------EEEEETTTSCHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCeEEEEEEecCCEE--------EEEECCCCCCHHHHHH
Confidence            36889999999999999999998877633        2234444455555544

>1q8l_A Copper-transporting ATPase 1; metal binding protein; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 1s6o_A 1s6u_A

Probab=80.62  E-value=1.3  Score=29.90  Aligned_cols=46  Identities=22%  Similarity=0.293  Sum_probs=33.1

Q ss_pred             cCCcchhhhhccCCCCeEEEEeeecCCCCCCCcccccccccccchhhHHHHHhh
Q psy9124          21 MGCFWAPDGLFGTTKGVLRTKVGYSGGTTENPTYRNIPAFTEQEVVVVEYCLDL   74 (213)
Q Consensus        21 gGCFWg~E~~F~~~~GV~~t~vGYagG~~~nPtYe~V~~~~~~e~Vs~e~LL~i   74 (213)
                      ++|-|.+|..+.+++||.++.+-+..+.        +...+++..++.+.|.+.
T Consensus        21 ~~C~~~ie~~l~~~~GV~~~~v~~~~~~--------~~v~~~~~~~~~~~i~~~   66 (84)
T 1q8l_A           21 HSCTSTIEGKIGKLQGVQRIKVSLDNQE--------ATIVYQPHLISVEEMKKQ   66 (84)
T ss_dssp             CSSCHHHHHHHHTCTTEEEEEECSTTTE--------EEEEECTTTCCHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCeEEEEEEecCCE--------EEEEECCCCCCHHHHHHH
Confidence            4799999999999999999999777653        222344545555555554

>2g9o_A Copper-transporting ATPase 1; menkes disease, solution structure, structural genomics, structural proteomics in europe, spine, hydrolase; NMR {Homo sapiens} PDB: 2ga7_A

Probab=80.54  E-value=0.56  Score=32.66  Aligned_cols=46  Identities=11%  Similarity=0.023  Sum_probs=33.2

Q ss_pred             cCCcchhhhhccCCCCeEEEEeeecCCCCCCCcccccccccccchhhHHHHHhh
Q psy9124          21 MGCFWAPDGLFGTTKGVLRTKVGYSGGTTENPTYRNIPAFTEQEVVVVEYCLDL   74 (213)
Q Consensus        21 gGCFWg~E~~F~~~~GV~~t~vGYagG~~~nPtYe~V~~~~~~e~Vs~e~LL~i   74 (213)
                      ++|-|.+|..+.+++||.++.|-+..+.        +...+++..++.+.|.+.
T Consensus        15 ~~C~~~Ie~~L~~~~GV~~v~v~l~~~~--------~~V~~~~~~~~~~~i~~~   60 (90)
T 2g9o_A           15 KSCVSNIESTLSALQYVSSIVVSLENRS--------AIVVYNASSVTPESLRKA   60 (90)
T ss_dssp             HHHHHHHHHHHTTCTTEEEEEEETTTTE--------EEEEECCSSCCTHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCeeEEEEEccCCE--------EEEEECCCCCCHHHHHHH
Confidence            4799999999999999999999887753        223445555555555543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	213
d1nwaa_	168	d.58.28.1 (A:) Peptide methionine sulfoxide reduct	3e-13
d1ff3a_	211	d.58.28.1 (A:) Peptide methionine sulfoxide reduct	2e-11
d1fvga_	192	d.58.28.1 (A:) Peptide methionine sulfoxide reduct	8e-10

>d1nwaa_ d.58.28.1 (A:) Peptide methionine sulfoxide reductase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 168

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Peptide methionine sulfoxide reductase
family: Peptide methionine sulfoxide reductase
domain: Peptide methionine sulfoxide reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 62.9 bits (152), Expect = 3e-13
 Identities = 32/134 (23%), Positives = 50/134 (37%), Gaps = 9/134 (6%)

Query: 12  NNTKTAVLAMGCFWAPDGLFGTTKGVLRTKVGYSGGTTENPTYRNIPAFTEQEVVVVEYC 71
            + + A+LA GCFW    L     GV+ T+VGYSGG   N TYRN     E   ++ +  
Sbjct: 4   TSNQKAILAGGCFWGLQDLIRNQPGVVSTRVGYSGGNIPNATYRNHGTHAEAVEIIFDPT 63

Query: 72  LDLFEPSGHG---------KRRRRRDSNSSNMTQTFTYASHPHVHHHDNHDNDTQYTKFQ 122
           +  +               K R+  D  +S  +  F +         D   +      + 
Sbjct: 64  VTDYRTLLEFFFQIHDPTTKDRQGNDRGTSYRSAIFYFDEQQKRIALDTIADVEASGLWP 123

Query: 123 ENIEYTVLMPGDLY 136
             +   V   GD +
Sbjct: 124 GKVVTEVSPAGDFW 137

>d1ff3a_ d.58.28.1 (A:) Peptide methionine sulfoxide reductase {Escherichia coli [TaxId: 562]} Length = 211

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Peptide methionine sulfoxide reductase
family: Peptide methionine sulfoxide reductase
domain: Peptide methionine sulfoxide reductase
species: Escherichia coli [TaxId: 562]

 Score = 58.6 bits (141), Expect = 2e-11
 Identities = 27/115 (23%), Positives = 38/115 (33%), Gaps = 6/115 (5%)

Query: 12  NNTKTAVLAMGCFWAPDGLFGTTKGVLRTKVGYSGGTTENPTYRNIPAFTEQEVVVVEYC 71
           +  + A+ AMGCFW  + LF    GV  T  GY+GG T NPTYR + +        V   
Sbjct: 40  DGMEIAIFAMGCFWGVERLFWQLPGVYSTAAGYTGGYTPNPTYREVCSGDTGHAEAVRIV 99

Query: 72  LDLFEPS------GHGKRRRRRDSNSSNMTQTFTYASHPHVHHHDNHDNDTQYTK 120
            D    S         +                 Y S  +    +         +
Sbjct: 100 YDPSVISYEQLLQVFWENHDPAQGMRQGNDHGTQYRSAIYPLTPEQDAAARASLE 154

>d1fvga_ d.58.28.1 (A:) Peptide methionine sulfoxide reductase {Cow (Bos taurus) [TaxId: 9913]} Length = 192

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Peptide methionine sulfoxide reductase
family: Peptide methionine sulfoxide reductase
domain: Peptide methionine sulfoxide reductase
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 54.0 bits (129), Expect = 8e-10
 Identities = 30/119 (25%), Positives = 46/119 (38%), Gaps = 12/119 (10%)

Query: 13  NTKTAVLAMGCFWAPDGLFGTTKGVLRTKVGYSGGTTENPTYRNIPAFTEQEVVVVEYCL 72
            T+ AV  MGCFW  +  F T KGV  T+VG++GG T NPTY+ + +       VV    
Sbjct: 36  GTQMAVFGMGCFWGAERKFWTLKGVYSTQVGFAGGYTPNPTYKEVCSGKTGHAEVVRVVF 95

Query: 73  DLFEPSGHGKRRRRRDSNSSNMTQTFTYASHPHVHHHDNHDNDTQYTKFQENIEYTVLM 131
                       +    +   + + F     P       +D+ +QY           + 
Sbjct: 96  ------------QPEHISFEELLKVFWENHDPTQGMRQGNDHGSQYRSAIYPTSAEHVG 142

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	213
d1ff3a_	211	Peptide methionine sulfoxide reductase {Escherichi	100.0
d1fvga_	192	Peptide methionine sulfoxide reductase {Cow (Bos t	100.0
d1nwaa_	168	Peptide methionine sulfoxide reductase {Mycobacter	100.0
d1kvja_	79	Menkes copper-transporting ATPase {Human (Homo sap	95.38
d1osda_	72	Mercuric ion binding protein MerP {Ralstonia metal	94.99
d2qifa1	69	Copper chaperone {Bacillus subtilis, CopZ [TaxId:	94.15
d1q8la_	84	Menkes copper-transporting ATPase {Human (Homo sap	93.78
d1cpza_	68	Copper chaperone {Enterococcus hirae [TaxId: 1354]	93.57
d2aw0a_	72	Menkes copper-transporting ATPase {Human (Homo sap	93.4
d1p6ta1	72	Potential copper-translocating P-type ATPase CopA	93.15
d1p6ta2	79	Potential copper-translocating P-type ATPase CopA	91.88
d2ggpb1	72	Copper transporter domain ccc2a {Baker's yeast (Sa	91.07

>d1ff3a_ d.58.28.1 (A:) Peptide methionine sulfoxide reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Peptide methionine sulfoxide reductase
family: Peptide methionine sulfoxide reductase
domain: Peptide methionine sulfoxide reductase
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=7.3e-50  Score=340.60  Aligned_cols=138  Identities=25%  Similarity=0.357  Sum_probs=121.1

Q ss_pred             cCCCCCccEEEEecCCcchhhhhccCCCCeEEEEeeecCCCCCCCcccccccc-----------cccchhhHHHHHhhcc
Q psy9124           8 TNGQNNTKTAVLAMGCFWAPDGLFGTTKGVLRTKVGYSGGTTENPTYRNIPAF-----------TEQEVVVVEYCLDLFE   76 (213)
Q Consensus         8 ~~~~~~~~~a~fagGCFWg~E~~F~~~~GV~~t~vGYagG~~~nPtYe~V~~~-----------~~~e~Vs~e~LL~iF~   76 (213)
                      +..|++|++|+||||||||+|++|+++|||++|+|||+||.++||||++||++           |||.+|||++||++||
T Consensus        36 ~~~p~~~e~a~fagGCFWg~E~~f~~l~GV~~t~~GYaGG~~~nPtY~~VcsG~TgH~E~V~V~yDp~~isy~~Ll~~F~  115 (211)
T d1ff3a_          36 TNVPDGMEIAIFAMGCFWGVERLFWQLPGVYSTAAGYTGGYTPNPTYREVCSGDTGHAEAVRIVYDPSVISYEQLLQVFW  115 (211)
T ss_dssp             SCCCTTCEEEEEECSSHHHHHHHHHTSTTEEEEEEEEESSSCSSCCHHHHHHTCSCCEEEEEEEECTTTSCHHHHHHHHH
T ss_pred             CCCCCCCeEEEEeccchhhhhHHHhcCCCEEEEeceecCCCCCCCCccccccCCCCCceeEEEEeccccCCHHHHHHHHH
Confidence            45678999999999999999999999999999999999999999999999965           5899999999999999


Q ss_pred             ----ccCCccc----cccccccccccCcccccCCchhhccc-cccc---cccccCC--ceEEeecCCCCCCchhhccC--
Q psy9124          77 ----PSGHGKR----RRRRDSNSSNMTQTFTYASHPHVHHH-DNHD---NDTQYTK--FQENIEYTVLMPGDLYRKTI--  140 (213)
Q Consensus        77 ----PT~~~rq----G~QYRSaIy~~~~eq~~~q~~~a~~~-~~~~---~~~~~~k--vTEi~p~~~F~pAE~YHQ~Y--  140 (213)
                          ||..|||    |+||||+||++|++    |+..|+++ +..+   ..+.+.+  +|||+|+..|||||+|||+|  
T Consensus       116 ~~hDPT~~n~Qg~D~G~QYRSaIf~~~~e----Q~~~A~~~i~~~q~~~~~~~~~~~IvTeI~~~~~Fy~AEeyHQ~Yl~  191 (211)
T d1ff3a_         116 ENHDPAQGMRQGNDHGTQYRSAIYPLTPE----QDAAARASLERFQAAMLAADDDRHITTEIANATPFYYAEDDHQQYLH  191 (211)
T ss_dssp             HSSCTTSSSEETTEESGGGCCEECCSSHH----HHHHHHHHHHHHHHHHHHTTCCCCCCCEECCCCCEEECCGGGTTHHH
T ss_pred             HhcCccccccccccCCccccceeeechhH----HHHHHHHHHHHHHHHHhhccCCCceEEEEecCCCeeeCHHHHHHHHH
Confidence                8888998    89999999999995    67777764 1111   1223344  89999999999999999999  


Q ss_pred             -CCCCCccch
Q psy9124         141 -SMESSCSTF  149 (213)
Q Consensus       141 -~p~~yC~~~  149 (213)
                       ||.+|||..
T Consensus       192 KNP~~YC~~~  201 (211)
T d1ff3a_         192 KNPYGYCGIG  201 (211)
T ss_dssp             HSCCCCCCCC
T ss_pred             hCCCCCCCCC
Confidence             999999974

>d1fvga_ d.58.28.1 (A:) Peptide methionine sulfoxide reductase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Peptide methionine sulfoxide reductase
family: Peptide methionine sulfoxide reductase
domain: Peptide methionine sulfoxide reductase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=7.8e-50  Score=336.24  Aligned_cols=133  Identities=24%  Similarity=0.341  Sum_probs=117.2

Q ss_pred             CCCCccEEEEecCCcchhhhhccCCCCeEEEEeeecCCCCCCCcccccccc-----------cccchhhHHHHHhhcc--
Q psy9124          10 GQNNTKTAVLAMGCFWAPDGLFGTTKGVLRTKVGYSGGTTENPTYRNIPAF-----------TEQEVVVVEYCLDLFE--   76 (213)
Q Consensus        10 ~~~~~~~a~fagGCFWg~E~~F~~~~GV~~t~vGYagG~~~nPtYe~V~~~-----------~~~e~Vs~e~LL~iF~--   76 (213)
                      .|+++++|+||||||||+|+.|+++|||++|+|||+||..+||||++||++           |||.+|||++||++||  
T Consensus        33 ~p~~~~~a~fagGCFWg~E~~f~~~~GV~~t~vGY~GG~~~nPtY~~Vc~g~TgH~E~V~V~yDp~~isy~~LL~~F~~~  112 (192)
T d1fvga_          33 FPEGTQMAVFGMGCFWGAERKFWTLKGVYSTQVGFAGGYTPNPTYKEVCSGKTGHAEVVRVVFQPEHISFEELLKVFWEN  112 (192)
T ss_dssp             CCTTCEEEEEEESSHHHHHHHHHTSTTEEEEEEEEESSSCSSCCHHHHHHTCSCCEEEEEEEECTTTSCHHHHHHHHHHT
T ss_pred             CCCCceEEEEEecccccceeeeeecCCeEEEEeeeccCCCCCCCcceeecCCCCCeeEEEEEEecccCCHHHHHHHHHhh
Confidence            467899999999999999999999999999999999999999999999975           5899999999999999  


Q ss_pred             --ccCCccc----cccccccccccCcccccCCchhhccccc---cccccccCC--ceEEeecCCCCCCchhhccC---CC
Q psy9124          77 --PSGHGKR----RRRRDSNSSNMTQTFTYASHPHVHHHDN---HDNDTQYTK--FQENIEYTVLMPGDLYRKTI---SM  142 (213)
Q Consensus        77 --PT~~~rq----G~QYRSaIy~~~~eq~~~q~~~a~~~~~---~~~~~~~~k--vTEi~p~~~F~pAE~YHQ~Y---~p  142 (213)
                        ||..|+|    |+||||+||++|++    |+..++++..   ....+.+.+  +|||+|++.|||||+|||+|   ||
T Consensus       113 hDPT~~n~Qg~D~G~QYRSaIf~~~~~----q~~~a~~~~~~~~~~~~~~~~~~I~TeI~~~~~Fy~AEeyHQ~Yl~knP  188 (192)
T d1fvga_         113 HDPTQGMRQGNDHGSQYRSAIYPTSAE----HVGAALKSKEDYQKVLSEHGFGLITTDIREGQTFYYAEDYHQQYLSKDP  188 (192)
T ss_dssp             SCTTCSSEETTEESGGGCEEECCSSHH----HHHHHHHHHHHHHHHHHHTTCCCCCCEECSSCCCEECCGGGTTHHHHST
T ss_pred             cccccccceecccCccccceeehhhHH----HHHHHHHHHHHHHHHHHhcCCCceEEEeecCCCEeECHHHHHHHHHHCC
Confidence              8999998    89999999999995    6777766311   112334433  89999999999999999999   99


Q ss_pred             CCCc
Q psy9124         143 ESSC  146 (213)
Q Consensus       143 ~~yC  146 (213)
                      ++||
T Consensus       189 ~~YC  192 (192)
T d1fvga_         189 DGYC  192 (192)
T ss_dssp             TCCC
T ss_pred             CCCC
Confidence            9999

>d1nwaa_ d.58.28.1 (A:) Peptide methionine sulfoxide reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Peptide methionine sulfoxide reductase
family: Peptide methionine sulfoxide reductase
domain: Peptide methionine sulfoxide reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=100.00  E-value=4.4e-49  Score=325.52  Aligned_cols=139  Identities=21%  Similarity=0.311  Sum_probs=121.3

Q ss_pred             CCccEEEEecCCcchhhhhccCCCCeEEEEeeecCCCCCCCcccccccc-------cccchhhHHHHHhhcc----ccCC
Q psy9124          12 NNTKTAVLAMGCFWAPDGLFGTTKGVLRTKVGYSGGTTENPTYRNIPAF-------TEQEVVVVEYCLDLFE----PSGH   80 (213)
Q Consensus        12 ~~~~~a~fagGCFWg~E~~F~~~~GV~~t~vGYagG~~~nPtYe~V~~~-------~~~e~Vs~e~LL~iF~----PT~~   80 (213)
                      ...++|+||||||||+|++|+++|||++|+|||+||+++||||++||+|       |||++||+++||++||    ||..
T Consensus         4 ~~~~~a~~agGCFWg~E~~f~~l~GV~~t~~GYagG~~~~PtY~~v~~H~E~V~V~yDp~~is~~~Ll~~ff~~hdPt~~   83 (168)
T d1nwaa_           4 TSNQKAILAGGCFWGLQDLIRNQPGVVSTRVGYSGGNIPNATYRNHGTHAEAVEIIFDPTVTDYRTLLEFFFQIHDPTTK   83 (168)
T ss_dssp             TCCEEEEEEESCHHHHHHHHTTSTTEEEEEEEEESSSCSSCCSSCCTTCEEEEEEEECTTTCCHHHHHHHHHHHSCTTST
T ss_pred             CccceEEEEcCCccccHHHHhcCCCEEEEEeeecccCCCCceeecccccceEEEEEEecccccHHHHHHHHHHhcCCccc
Confidence            4568899999999999999999999999999999999999999999987       6999999999999999    9999


Q ss_pred             ccc----cccccccccccCcccccCCchhhccc-cccccccccCC--ceEEeecCCCCCCchhhccC---CCCCC-ccch
Q psy9124          81 GKR----RRRRDSNSSNMTQTFTYASHPHVHHH-DNHDNDTQYTK--FQENIEYTVLMPGDLYRKTI---SMESS-CSTF  149 (213)
Q Consensus        81 ~rq----G~QYRSaIy~~~~eq~~~q~~~a~~~-~~~~~~~~~~k--vTEi~p~~~F~pAE~YHQ~Y---~p~~y-C~~~  149 (213)
                      |+|    |+|||||||++|++    |+.+|++. +....+..+.+  +|||+|++.|||||+|||+|   ||.+| ||. 
T Consensus        84 ~~Qg~D~G~QYRS~If~~~~~----Q~~~a~~~i~~~~~~~~~~~~IvTeI~~~~~F~~AEeyHQ~Yl~Knp~~y~C~~-  158 (168)
T d1nwaa_          84 DRQGNDRGTSYRSAIFYFDEQ----QKRIALDTIADVEASGLWPGKVVTEVSPAGDFWEAEPEHQDYLQRYPNGYTCHF-  158 (168)
T ss_dssp             TEETTEESGGGCEEEEESSHH----HHHHHHHHHHHHHHHCCSSSCCCCEEEECCCEEECCGGGTTHHHHSTTSCCCCC-
T ss_pred             cccCCCCCccceeeEEeeccc----hHHHHHHHHHHHHHhhccCCceEEEEeccCCEEEcHHHHHHHHHhCCCCceeEE-
Confidence            998    99999999999995    78888874 23333444555  89999999999999999999   99666 874 


Q ss_pred             hhhhcc
Q psy9124         150 LLVSGV  155 (213)
Q Consensus       150 l~~s~~  155 (213)
                      +-++..
T Consensus       159 ~~p~~~  164 (168)
T d1nwaa_         159 VRPGWR  164 (168)
T ss_dssp             CCTTSC
T ss_pred             ecCCcC
Confidence            555543

>d1kvja_ d.58.17.1 (A:) Menkes copper-transporting ATPase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Menkes copper-transporting ATPase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.38  E-value=0.0037  Score=42.77  Aligned_cols=60  Identities=13%  Similarity=0.300  Sum_probs=47.6

Q ss_pred             CCCCCccEEEE------ecCCcchhhhhccCCCCeEEEEeeecCCCCCCCcccccccccccchhhHHHHHhhcc
Q psy9124           9 NGQNNTKTAVL------AMGCFWAPDGLFGTTKGVLRTKVGYSGGTTENPTYRNIPAFTEQEVVVVEYCLDLFE   76 (213)
Q Consensus         9 ~~~~~~~~a~f------agGCFWg~E~~F~~~~GV~~t~vGYagG~~~nPtYe~V~~~~~~e~Vs~e~LL~iF~   76 (213)
                      ....++++++|      -++|-|.+|..+.++|||.++.+=+..|        .|...+++..++.++|.+..-
T Consensus         2 ~~~~~~~~~~l~V~gm~C~~C~~~ie~~l~~~~gv~~v~v~~~~~--------~v~v~~d~~~~~~~~i~~~i~   67 (79)
T d1kvja_           2 DPSMGVNSVTISVEGMTCNSCVWTIEQQIGKVNGVHHIKVSLEEK--------NATIIYDPKLQTPKTLQEAID   67 (79)
T ss_dssp             CSSTTCEEEEEEEESCCSTHHHHHHHHHHHTTTTCSEEEEETTTT--------EEEEEECTTTCCHHHHHHHHH
T ss_pred             CCCCCceEEEEEECCeecHHHHHHHHHHHhcCCCceEEEEECCCC--------EEEEEECCCCCCHHHHHHHHH
Confidence            34456777776      4689999999999999999999988876        455567888889888887653

>d1osda_ d.58.17.1 (A:) Mercuric ion binding protein MerP {Ralstonia metallidurans CH34 [TaxId: 266264]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Mercuric ion binding protein MerP
species: Ralstonia metallidurans CH34 [TaxId: 266264]

Probab=94.99  E-value=0.0052  Score=41.28  Aligned_cols=48  Identities=10%  Similarity=0.098  Sum_probs=40.2

Q ss_pred             ecCCcchhhhhccCCCCeEEEEeeecCCCCCCCcccccccccccchhhHHHHHhhc
Q psy9124          20 AMGCFWAPDGLFGTTKGVLRTKVGYSGGTTENPTYRNIPAFTEQEVVVVEYCLDLF   75 (213)
Q Consensus        20 agGCFWg~E~~F~~~~GV~~t~vGYagG~~~nPtYe~V~~~~~~e~Vs~e~LL~iF   75 (213)
                      -++|-|.+|..+.++|||.++.|-|..+        .+...+++..+++++|.+..
T Consensus        14 C~~C~~~Ie~~l~~~~gV~~v~v~~~~~--------~~~v~~~~~~~~~~~i~~~i   61 (72)
T d1osda_          14 CSACPITVKKAISKVEGVSKVDVTFETR--------QAVVTFDDAKTSVQKLTKAT   61 (72)
T ss_dssp             STTHHHHHHHHHHTSTTEEEEEEETTTT--------EEEEEEETTTCCHHHHHHHH
T ss_pred             cHHHHHHHHHHHHcCCCcEEEEEEcCCC--------EEEEEECCCCCCHHHHHHHH
Confidence            4689999999999999999999988876        44556788888888877754

>d2qifa1 d.58.17.1 (A:1-69) Copper chaperone {Bacillus subtilis, CopZ [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Copper chaperone
species: Bacillus subtilis, CopZ [TaxId: 1423]

Probab=94.15  E-value=0.011  Score=39.24  Aligned_cols=48  Identities=21%  Similarity=0.275  Sum_probs=39.2

Q ss_pred             ecCCcchhhhhccCCCCeEEEEeeecCCCCCCCcccccccccccchhhHHHHHhhc
Q psy9124          20 AMGCFWAPDGLFGTTKGVLRTKVGYSGGTTENPTYRNIPAFTEQEVVVVEYCLDLF   75 (213)
Q Consensus        20 agGCFWg~E~~F~~~~GV~~t~vGYagG~~~nPtYe~V~~~~~~e~Vs~e~LL~iF   75 (213)
                      -++|-|.+|..+.++|||.++.+=++.+        .|...+|++.++.++|.+..
T Consensus        13 C~~C~~~Ie~~l~~~~GV~~v~v~~~~~--------~v~v~~d~~~~~~~~i~~~i   60 (69)
T d2qifa1          13 CQHCVKAVETSVGELDGVSAVHVNLEAG--------KVDVSFDADKVSVKDIADAI   60 (69)
T ss_dssp             SHHHHHHHHHHHHTSTTEEEEEEETTTT--------EEEEEECTTTCCHHHHHHHH
T ss_pred             CHHHHHHHHHHHhcCCCceEEEEECCCC--------EEEEEECCCCCCHHHHHHHH
Confidence            3579999999999999999999988877        44556788888888776654

>d1q8la_ d.58.17.1 (A:) Menkes copper-transporting ATPase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Menkes copper-transporting ATPase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.78  E-value=0.019  Score=39.58  Aligned_cols=49  Identities=22%  Similarity=0.316  Sum_probs=40.7

Q ss_pred             ecCCcchhhhhccCCCCeEEEEeeecCCCCCCCcccccccccccchhhHHHHHhhcc
Q psy9124          20 AMGCFWAPDGLFGTTKGVLRTKVGYSGGTTENPTYRNIPAFTEQEVVVVEYCLDLFE   76 (213)
Q Consensus        20 agGCFWg~E~~F~~~~GV~~t~vGYagG~~~nPtYe~V~~~~~~e~Vs~e~LL~iF~   76 (213)
                      .++|-|-+|..+.++|||.++.+=+..+        .|...+++..++.+.|.+..-
T Consensus        20 C~~C~~~Ie~~l~~~~GV~~v~vn~~~~--------~v~v~~~~~~~~~~~i~~~I~   68 (84)
T d1q8la_          20 CHSCTSTIEGKIGKLQGVQRIKVSLDNQ--------EATIVYQPHLISVEEMKKQIE   68 (84)
T ss_dssp             TCSSCHHHHHHHHTCTTEEEEEECSTTT--------EEEEEECTTTCCHHHHHHHHH
T ss_pred             cHHHHHHHHHHHhcCCCceEEEEECCCC--------EEceeecccccCHHHHHHHHH
Confidence            4689999999999999999999988877        444467888888888877663

>d1cpza_ d.58.17.1 (A:) Copper chaperone {Enterococcus hirae [TaxId: 1354]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Copper chaperone
species: Enterococcus hirae [TaxId: 1354]

Probab=93.57  E-value=0.017  Score=38.22  Aligned_cols=48  Identities=15%  Similarity=0.107  Sum_probs=39.4

Q ss_pred             ecCCcchhhhhccCCCCeEEEEeeecCCCCCCCcccccccccccchhhHHHHHhhc
Q psy9124          20 AMGCFWAPDGLFGTTKGVLRTKVGYSGGTTENPTYRNIPAFTEQEVVVVEYCLDLF   75 (213)
Q Consensus        20 agGCFWg~E~~F~~~~GV~~t~vGYagG~~~nPtYe~V~~~~~~e~Vs~e~LL~iF   75 (213)
                      -++|-|.+|..+.++|||.++.|=+..+        .|...+|+..++.++|.+..
T Consensus        11 C~~C~~~Ie~~l~~~~GV~~v~V~~~~~--------~v~v~~d~~~~~~~~i~~~i   58 (68)
T d1cpza_          11 CNHCVARIEEAVGRISGVKKVKVQLKKE--------KAVVKFDEANVQATEICQAI   58 (68)
T ss_dssp             SSSHHHHHHHHHHTSTTEEEEEEETTTT--------EEEEEECTTTCCHHHHHHHH
T ss_pred             cHHHHHHHHHHHhcCCCcEEEEEECCCC--------EEEEEECCCCCCHHHHHHHH
Confidence            4689999999999999999999988876        34446788888888877654

>d2aw0a_ d.58.17.1 (A:) Menkes copper-transporting ATPase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Menkes copper-transporting ATPase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.40  E-value=0.0067  Score=40.56  Aligned_cols=48  Identities=15%  Similarity=0.169  Sum_probs=39.6

Q ss_pred             ecCCcchhhhhccCCCCeEEEEeeecCCCCCCCcccccccccccchhhHHHHHhhc
Q psy9124          20 AMGCFWAPDGLFGTTKGVLRTKVGYSGGTTENPTYRNIPAFTEQEVVVVEYCLDLF   75 (213)
Q Consensus        20 agGCFWg~E~~F~~~~GV~~t~vGYagG~~~nPtYe~V~~~~~~e~Vs~e~LL~iF   75 (213)
                      -++|-|.+|..+.++|||.++.|=+..+        .|...+||+.++.++|.+..
T Consensus        14 C~~C~~~Ie~~l~~~~GV~~v~v~~~~~--------~v~v~~d~~~~~~~~i~~~i   61 (72)
T d2aw0a_          14 CNSCVQSIEGVISKKPGVKSIRVSLANS--------NGTVEYDPLLTSPETLRGAI   61 (72)
T ss_dssp             SHHHHHHHHHHHHTSTTCCCEEEETTTT--------EEEEEECTTTCCHHHHHHHH
T ss_pred             cHHHHHHHHHHHhcCCCcEEEEEECCCC--------EEEEEECCCCCCHHHHHHHH
Confidence            4578999999999999999999988876        45557788888888877654

>d1p6ta1 d.58.17.1 (A:1-72) Potential copper-translocating P-type ATPase CopA (YvgX) {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Potential copper-translocating P-type ATPase CopA (YvgX)
species: Bacillus subtilis [TaxId: 1423]

Probab=93.15  E-value=0.018  Score=38.34  Aligned_cols=48  Identities=8%  Similarity=0.059  Sum_probs=38.8

Q ss_pred             ecCCcchhhhhccCCCCeEEEEeeecCCCCCCCcccccccccccchhhHHHHHhhc
Q psy9124          20 AMGCFWAPDGLFGTTKGVLRTKVGYSGGTTENPTYRNIPAFTEQEVVVVEYCLDLF   75 (213)
Q Consensus        20 agGCFWg~E~~F~~~~GV~~t~vGYagG~~~nPtYe~V~~~~~~e~Vs~e~LL~iF   75 (213)
                      .++|-|-+|..+.++|||.++.|=++.+        .+...+|+..++.++|.+..
T Consensus        17 C~~C~~~Ie~~l~~~~gV~~v~v~~~~~--------~~~v~~d~~~~~~~~i~~~i   64 (72)
T d1p6ta1          17 CAACAARIEKGLKRMPGVTDANVNLATE--------TVNVIYDPAETGTAAIQEKI   64 (72)
T ss_dssp             SSHHHHHHHHHHTTSSSEEEEEEEGGGT--------EEEEEECTTTSCHHHHHHHH
T ss_pred             cHHHHHHHHHHHHcCCCcEEEEEEcCCC--------EEEEEECCCCCCHHHHHHHH
Confidence            4688999999999999999999988887        34446677778887776653

>d1p6ta2 d.58.17.1 (A:73-151) Potential copper-translocating P-type ATPase CopA (YvgX) {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Potential copper-translocating P-type ATPase CopA (YvgX)
species: Bacillus subtilis [TaxId: 1423]

Probab=91.88  E-value=0.031  Score=37.84  Aligned_cols=49  Identities=10%  Similarity=0.123  Sum_probs=40.7

Q ss_pred             ecCCcchhhhhccCCCCeEEEEeeecCCCCCCCcccccccccccchhhHHHHHhhcc
Q psy9124          20 AMGCFWAPDGLFGTTKGVLRTKVGYSGGTTENPTYRNIPAFTEQEVVVVEYCLDLFE   76 (213)
Q Consensus        20 agGCFWg~E~~F~~~~GV~~t~vGYagG~~~nPtYe~V~~~~~~e~Vs~e~LL~iF~   76 (213)
                      -++|-|.+|..+..+|||.++.+=++.+        .+...++|..+++++|.+..-
T Consensus        13 C~~C~~~Ie~~l~~~~gV~~v~v~~~~~--------~~~v~~~~~~~~~~~i~~~i~   61 (79)
T d1p6ta2          13 CAACANRIEKRLNKIEGVANAPVNFALE--------TVTVEYNPKEASVSDLKEAVD   61 (79)
T ss_dssp             SSSHHHHHHHHHTTSSSEEECCEETTTT--------EEEEEECTTTCCHHHHHHHHH
T ss_pred             cHHHHHHHHHHHhcCCCcEEEEEEeCCC--------EEEEEECCCCCCHHHHHHHHH
Confidence            3689999999999999999999988876        444567888889888887763

>d2ggpb1 d.58.17.1 (B:1-72) Copper transporter domain ccc2a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Copper transporter domain ccc2a
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.07  E-value=0.08  Score=35.05  Aligned_cols=47  Identities=13%  Similarity=0.210  Sum_probs=35.5

Q ss_pred             ecCCcchhhhhccCCCCeEEEEeeecCCCCCCCcccccccccccchhhHHHHHhhc
Q psy9124          20 AMGCFWAPDGLFGTTKGVLRTKVGYSGGTTENPTYRNIPAFTEQEVVVVEYCLDLF   75 (213)
Q Consensus        20 agGCFWg~E~~F~~~~GV~~t~vGYagG~~~nPtYe~V~~~~~~e~Vs~e~LL~iF   75 (213)
                      -++|-|.+|..+.++|||.++.|-+..+..        ...++++ ++.++|.+..
T Consensus        13 C~~C~~~Ie~~l~~~~gV~~v~V~~~~~~~--------~v~~~~~-~~~~~i~~~i   59 (72)
T d2ggpb1          13 CSACTNTINTQLRALKGVTKCDISLVTNEC--------QVTYDNE-VTADSIKEII   59 (72)
T ss_dssp             SSTTTHHHHHHHTTSTTEEEEEECTTTCEE--------EEEECSS-CCHHHHHHHH
T ss_pred             cHHHHHHHHHHHhcCCCceEEEEECCCCEE--------EEEECCC-CCHHHHHHHH
Confidence            468999999999999999999999988743        3344543 4666666544