Psyllid ID: psy9141

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------38
Protein Sequence
MKCNSKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARMIHGQNGKLREIPYDPVHNQVELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAYSGVRKCLMKQSMFNYSQTYIEHGYMELCIPPSEDNEVWLYKNRLLSSVPEVRKRISLRAQSLKSLMNFPRADQGGDKRDCLLHEGTSRILVPNMRLSNHLDRDQPCKPLLDFKNPIKIQSHAVVNEFYKQESLIVASLCQEKIEKMFDNTSTYKSRHINFIHRSYHLYTVDIGVHKVTESSILNLLLRGMKKNVPMPNKKLDMILESANGLGVLGRRLFNRTQ
Secondary Structure (PSIPRED)
ccccccccEEEEcccHHHHHHHHHHHHcccEEEEEEEccccccccccccccccEEccHHHHHHHHHcccHHHHHccccccEEEEEEcccccEEEEcccccccccccccccccEEEcccEEEEEEccccEEEEEEEccccEEEEEEccEEEEcccccHHHHHHHHccccccccEEEEEEEEEEEEEcccccccEEcccccEEEEEcccccEEEEEEccccccccccccccccHHHHHHHcccccccccccccccccHHHccccccEEEEccccEEccEEEEEccccccHHHHHHHHHHHHHHHHHHccccccccccccccccEEEEEEccEEEEHHHHHHHHHHHHcccccccccHHHHHHHHHcccccHHHHHcccccc
Secondary Structure Prediction (SSPRO)
cccccccEEEEEcccHHHHHHHHHHHHcccEEEEEEcccccccccccccccHHHHHHHHHHHHHHHcccHHHHHHHcccccccEEEcccccEEEEEccccccEEEEEccccEEEEEccEEEEEcccccEEEEEcccccccEEEEEEEEEEEcccHHHHHHHHHHHcccccccHHHccccEEEEEccccccccEcccccEEEEEcccccccccEEEEEEccHHHHHHcccHHHHHHHHHHHccccEEcccccHHHHHHHccccccEEEEEccccccccEEEEcccccccEEEHcHHHHHHHHHHHccccccHHHHHHHHHHcEEEEEEcccccccHHHHHHHHHHHcccccccccHHHHHHHHHcccHcHHHHHHHcccc
Coil and Loop (DISEMBL)
MKCNSKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIrnsglsegksiNLALSVRGREALRRIGLEDkllahgipmrarmihgqngklreipydpvhnqveleqypdcniyfqhklinldvnsgnvtfyrtednsetkitdnqliigadgaYSGVRKCLMKQSMFNYSQTYIEHgymelcippsednevWLYKNRLLSSVPEVRKRISLRAQSLKSLmnfpradqggdkrdcllhegtsrilvpnmrlsnhldrdqpckplldfknpikiQSHAVVNEFYKQESLIVASLCQEKIEKMFDNtstyksrhinfIHRSYHLYTVDIGVHKVTESSILNLLLRGmkknvpmpnkKLDMILESANglgvlgrrlfnrtq
Flexible Loop (DISEMBL)
mkcnskksvvIVGGGLVGSLSACMFAKNQYEVNLYEAREDIrnsglsegksinlalsvRGREALRRIGLEdkllahgipmrARMIHGQNGKLREIPYDPVHNQVELEQYPDCNIYFQHKLINLDVNSGNVTFYRTednsetkitdnqliiGADGAYSGVRKCLMKQSMFNYSQTYIEHGYMELCIPPSEDNEVWLYKNRLLSSVPEVRKRISLRAQSLkslmnfpradqggdKRDCLLHEGTsrilvpnmrlsnhlDRDQPCKPLLDFKNPIKIQSHAVVNEFYKQESLIVASLCQEKIEKMFDNTSTYKSRHINFIHRSYHLYTVDIGVHKVTESSILNLLLRGMKKNVPMPNKKLDMILEsanglgvlgrrlfnrtq
Low Complexity Region (SEG)
MKCNskksvvivggglvgslsACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARMIHGQNGKLREIPYDPVHNQVELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAYSGVRKCLMKQSMFNYSQTYIEHGYMELCIPPSEDNEVWLYKNRLLSSVPEVRKRISLRAQSLKSLMNFPRADQGGDKRDCLLHEGTSRILVPNMRLSNHLDRDQPCKPLLDFKNPIKIQSHAVVNEFYKQESLIVASLCQEKIEKMFDNTSTYKSRHINFIHRSYHLYTVDIGVHKVTESSILNLLLRGMKKNVPMPNKKLDMILESANGLGVLGRRLFNRTQ
Disordered region (IsUnstruct)
********VVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGL**GKSINLALSVRGREALRRIGLEDKLLAHGIPMRARMIHGQNGKLREIPYDPVHNQVELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAYSGVRKCLMKQSMFNYSQTYIEHGYMELCIPPSEDNEVWLYKNRLLSSVPEVRKRI***********************DCLLHEGTSRILVPNMRLSNHLDRDQPCKPLLDFKNPIKIQSHAVVNEFYKQESLIVASLCQEKIEKMFDNTSTYKSRHINFIHRSYHLYTVDIGVHKVTESSILNLLLRGMKKNVPMPNKKLDMILESANGLGVLGRRL*****
Disordered Region (DISOPRED)
******K***IVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARMIHGQNGKLREIPYDPVHNQVELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAYSGVRKCLMKQSMFNYSQTYIEHGYMELCIPPSEDNEVWLYKNRLLSSVPEVRKRISLRAQSLKSLMNFPRADQGGDKRDCLLHEGTSRILVPNMRLSNHLDRDQPCKPLLDFKNPIKIQSHAVVNEFYKQESLIVASLCQEKIEKMFDNTSTYKSRHINFIHRSYHLYTVDIGVHKVTESSILNLLLRGMKKNVPMPNKKLDMILESANGLGVLGRRLFN***
Disordered Region (DISEMBL)
MKCNSKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARMIHGQNGKLREIPYDPVHNQVELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAYSGVRKCLMKQSMFNYSQTYIEHGYMELCIPPSEDNEVWLYKNRLLSSVPEVRKRISLRAQSLKSLMNFPRADQGGDKRDCLLHEGTSRILVPNMRLSNHLDRDQPCKPLLDFKNPIKIQSHAVVNEFYKQESLIVASLCQEKIEKMFDNTSTYKSRHINFIHRSYHLYTVDIGVHKVTESSILNLLLRGMKKNVPMPNKKLDMILESANGLGVLGRRLFNRTQ
Disordered Region (DISPRO)
*****KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARMIHGQNGKLREIPYDPVHNQVELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAYSGVRKCLMKQSMFNYSQTYIEHGYMELCIPPSEDNEVWLYKNRLLSSVPEVRKRISLRAQSLKSLMNFPRADQGGDKRDCLLHEGTSRILVPNMRLSNHLDRDQPCKPLLDFKNPIKIQSHAVVNEFYKQESLIVASLCQEKIEKMFDNTSTYKSRHINFIHRSYHLYTVDIGVHKVTESSILNLLLRGMKKNVPMPNKKLDMILESANGLGVLGRRLFNR**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKCNSKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARMIHGQNGKLREIPYDPVHNQVELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAYSGVRKCLMKQSMFNYSQTYIEHGYMELCIPPSEDNEVWLYKNRLLSSVPEVRKRISLRAQSLKSLMNFPRADQGGDKRDCLLHEGTSRILVPNMRLSNHLDRDQPCKPLLDFKNPIKIQSHAVVNEFYKQESLIVASLCQEKIEKMFDNTSTYKSRHINFIHRSYHLYTVDIGVHKVTESSILNLLLRGMKKNVPMPNKKLDMILESANGLGVLGRRLFNRTQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	379	2.2.26 [Sep-21-2011]
Q7Q6A7	486	Kynurenine 3-monooxygenas	yes	N/A	0.503	0.393	0.483	6e-48
Q1RLY6	474	Kynurenine 3-monooxygenas	yes	N/A	0.546	0.436	0.432	1e-47
O15229	486	Kynurenine 3-monooxygenas	yes	N/A	0.540	0.421	0.406	1e-45
Q9MZS9	471	Kynurenine 3-monooxygenas	yes	N/A	0.540	0.435	0.406	3e-45
Q91WN4	479	Kynurenine 3-monooxygenas	yes	N/A	0.704	0.557	0.37	1e-42
Q86PM2	476	Kynurenine 3-monooxygenas	N/A	N/A	0.472	0.376	0.452	5e-41
Q6DIZ8	473	Kynurenine 3-monooxygenas	yes	N/A	0.546	0.437	0.450	2e-40
O88867	478	Kynurenine 3-monooxygenas	yes	N/A	0.506	0.401	0.402	1e-37
A1Z746	465	Kynurenine 3-monooxygenas	no	N/A	0.535	0.436	0.381	2e-37
B4MPK3	1204	Protein kintoun OS=Drosop	N/A	N/A	0.514	0.161	0.390	2e-35

>sp|Q7Q6A7|KMO_ANOGA Kynurenine 3-monooxygenase OS=Anopheles gambiae GN=kh PE=2 SV=2

 Score =  191 bits (486), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 100/207 (48%), Positives = 130/207 (62%), Gaps = 16/207 (7%)

Query: 9   VVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIG 68
           V IVGGGLVGSL A    K  +EVNLYE REDIR + L  G+SINLALS RGR AL  +G
Sbjct: 24  VAIVGGGLVGSLLALHLGKKGHEVNLYEYREDIRTAELVIGRSINLALSARGRRALAEVG 83

Query: 69  LEDKLLAHGIPMRARMIHGQNGKLREIPYDPVHNQV---------------ELEQYPDCN 113
           LED LL HGIPM  RM+H  NGK + +PYD   NQ                  E+YP+ +
Sbjct: 84  LEDALLNHGIPMSGRMLHDVNGKCKIVPYDANTNQCIYSVGRKHLNEVLLNAAEKYPNIH 143

Query: 114 IYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAYSGVRKCLMKQSMFNYSQ 173
           ++F HKL++ +++ GN++        + K     LI+G DGAYS VRK ++K+  +++SQ
Sbjct: 144 LHFNHKLVSANLDEGNLSMVDPV-TKDVKSARADLIVGCDGAYSAVRKEIVKRPRYDFSQ 202

Query: 174 TYIEHGYMELCIPPSEDNEVWLYKNRL 200
           TYIEHGY+ELCIPP+   E  +  N L
Sbjct: 203 TYIEHGYLELCIPPTAGGEFAMPHNYL 229

Catalyzes the hydroxylation of L-kynurenine (L-Kyn) to form 3-hydroxy-L-kynurenine (L-3OHKyn). Required for synthesis of quinolinic acid.
Anopheles gambiae (taxid: 7165)
EC: 1EC: .EC: 1EC: 4EC: .EC: 1EC: 3EC: .EC: 9

>sp|Q1RLY6|KMO_DANRE Kynurenine 3-monooxygenase OS=Danio rerio GN=kmo PE=2 SV=1

 Score =  190 bits (483), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 100/231 (43%), Positives = 144/231 (62%), Gaps = 24/231 (10%)

Query: 4   NSKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREA 63
           + +K + +VGGGLVGSL+AC  AK  ++V +YE+REDIR + + +G+SINLALS RGR+A
Sbjct: 14  SKRKVIAVVGGGLVGSLNACFLAKRGFDVEVYESREDIRQAKVVKGRSINLALSHRGRQA 73

Query: 64  LRRIGLEDKLLAHGIPMRARMIHGQNGKLREIPY----------DPVHNQVEL----EQY 109
           L+ +G+EDK+++ GIPM ARMIH  NGK   IPY          D  +   EL    E Y
Sbjct: 74  LKHVGMEDKIISKGIPMHARMIHNVNGKRSPIPYGKKGQYILSVDRANLNKELLTAAEAY 133

Query: 110 PDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAYSGVRKCLMKQSMF 169
           P+  + F HKL +    +G +TF  + D  +T+ T   LI+G DGA+S VRK  ++QS F
Sbjct: 134 PNTRLNFNHKLHDWSPKTGTMTFIGS-DGQKTE-TQADLIVGCDGAFSAVRKQFLRQSRF 191

Query: 170 NYSQTYIEHGYMELCIPPSEDN--------EVWLYKNRLLSSVPEVRKRIS 212
           NYSQTYI HGYMEL +PP + +         +W     ++ ++P + +  +
Sbjct: 192 NYSQTYIPHGYMELTMPPKDGDFAMEPNYLHIWPRNTFMMIALPNLDRTFT 242

Catalyzes the hydroxylation of L-kynurenine (L-Kyn) to form 3-hydroxy-L-kynurenine (L-3OHKyn). Required for synthesis of quinolinic acid.

Danio rerio (taxid: 7955)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 3

EC: .

EC: 9

>sp|O15229|KMO_HUMAN Kynurenine 3-monooxygenase OS=Homo sapiens GN=KMO PE=1 SV=2

 Score =  184 bits (466), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 93/229 (40%), Positives = 135/229 (58%), Gaps = 24/229 (10%)

Query: 6   KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALR 65
           +K V ++GGGLVGSL AC  AK  +++++YEARED R +  + G+SINLALS RGR+AL+
Sbjct: 8   RKKVAVIGGGLVGSLQACFLAKRNFQIDVYEAREDTRVATFTRGRSINLALSHRGRQALK 67

Query: 66  RIGLEDKLLAHGIPMRARMIHGQNGKLREIPYDPVHNQV--------------ELEQYPD 111
            +GLED++++ GIPMRARMIH  +GK   IPY      +                E+YP+
Sbjct: 68  AVGLEDQIVSQGIPMRARMIHSLSGKKSAIPYGTKSQYILSVSRENLNKDLLTAAEKYPN 127

Query: 112 CNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAYSGVRKCLMKQSMFNY 171
             ++F H+L+  +   G +T   ++   +    D  LI+G DGAYS VR  LMK+  F+Y
Sbjct: 128 VKMHFNHRLLKCNPEEGMITVLGSDKVPKDVTCD--LIVGCDGAYSTVRSHLMKKPRFDY 185

Query: 172 SQTYIEHGYMELCIPPSEDN--------EVWLYKNRLLSSVPEVRKRIS 212
           SQ YI HGYMEL IPP   +         +W     ++ ++P + K  +
Sbjct: 186 SQQYIPHGYMELTIPPKNGDYAMEPNYLHIWPRNTFMMIALPNMNKSFT 234

Catalyzes the hydroxylation of L-kynurenine (L-Kyn) to form 3-hydroxy-L-kynurenine (L-3OHKyn). Required for synthesis of quinolinic acid, a neurotoxic NMDA receptor antagonist and potential endogenous inhibitor of NMDA receptor signaling in axonal targeting, synaptogenesis and apoptosis during brain development. Quinolinic acid may also affect NMDA receptor signaling in pancreatic beta cells, osteoblasts, myocardial cells, and the gastrointestinal tract.

Homo sapiens (taxid: 9606)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 3

EC: .

EC: 9

>sp|Q9MZS9|KMO_PIG Kynurenine 3-monooxygenase OS=Sus scrofa GN=KMO PE=2 SV=2

 Score =  182 bits (463), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 93/229 (40%), Positives = 137/229 (59%), Gaps = 24/229 (10%)

Query: 6   KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALR 65
           + S+ ++GGGLVGSL+AC  AK  ++V++YE+REDIR +  + G+SINLALS RGR+AL+
Sbjct: 8   RTSIAVIGGGLVGSLNACFLAKRNFQVDVYESREDIRMAEFARGRSINLALSYRGRQALK 67

Query: 66  RIGLEDKLLAHGIPMRARMIHGQNGKLREIPYDPVHNQV--------------ELEQYPD 111
            IGLED++++ GIPMRARMIH  +GK   IPY      +               +E+YP+
Sbjct: 68  AIGLEDQIVSQGIPMRARMIHSLSGKKSAIPYGTKSQYILSISRENLNKDLLTAVEKYPN 127

Query: 112 CNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAYSGVRKCLMKQSMFNY 171
             ++F H+L+     +G +T    +   +    D  LI+G DGAYS VR  L+K+  F+Y
Sbjct: 128 AKVHFGHQLLKCRPETGVITLLGPDKVPKDIACD--LILGCDGAYSTVRTHLVKKPRFDY 185

Query: 172 SQTYIEHGYMELCIPPSEDN--------EVWLYKNRLLSSVPEVRKRIS 212
           SQ YI HGYMEL IPP   +         +W     ++ ++P + K  +
Sbjct: 186 SQQYIPHGYMELTIPPQNGDFAMEPNYLHIWPRDTFMMIALPNMNKSFT 234

Catalyzes the hydroxylation of L-kynurenine (L-Kyn) to form 3-hydroxy-L-kynurenine (L-3OHKyn). Required for synthesis of quinolinic acid, a neurotoxic NMDA receptor antagonist and potential endogenous inhibitor of NMDA receptor signaling in axonal targeting, synaptogenesis and apoptosis during brain development. Quinolinic acid may also affect NMDA receptor signaling in pancreatic beta cells, osteoblasts, myocardial cells, and the gastrointestinal tract.

Sus scrofa (taxid: 9823)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 3

EC: .

EC: 9

>sp|Q91WN4|KMO_MOUSE Kynurenine 3-monooxygenase OS=Mus musculus GN=Kmo PE=1 SV=1

 Score =  174 bits (440), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 111/300 (37%), Positives = 156/300 (52%), Gaps = 33/300 (11%)

Query: 7   KSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRR 66
           K V ++GGGLVG+L+AC  AK  ++V++YEAREDIR +  + G+SINLALS RGR+AL+ 
Sbjct: 9   KRVAVIGGGLVGALNACFLAKRNFQVDVYEAREDIRVAKSARGRSINLALSYRGRQALKA 68

Query: 67  IGLEDKLLAHGIPMRARMIHGQNGKLREIPYDPVHNQV--------------ELEQYPDC 112
           IGLED++++ G+PM+ARMIH  +GK   IPY      +               +E Y + 
Sbjct: 69  IGLEDQIVSKGVPMKARMIHSLSGKKSAIPYGNKSQYILSISRENLNKDLLTAVESYANA 128

Query: 113 NIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAYSGVRKCLMKQSMFNYS 172
            ++F HKL       G +T    +        D  L++G DGAYS VR  LMK+  F+Y+
Sbjct: 129 KVHFGHKLSKCIPEEGVLTVLGPDKVPRDVTCD--LVVGCDGAYSTVRAHLMKKPRFDYT 186

Query: 173 QTYIEHGYMELCIPPS------EDN--EVWLYKNRLLSSVPEVRKRISLRAQSLKSLMNF 224
           Q YI HGYMEL IPP       E N   +W     ++ ++P + K  S           F
Sbjct: 187 QQYIPHGYMELTIPPKNGEYAMEPNCLHIWPRNAYMMIALPNMDK--SFTCTLFMPFEEF 244

Query: 225 PRADQGGDKRDCLLHEGTSRILVPNMRLSNHLDRD---QPCKPLLDFK-NPIKIQSHAVV 280
            R     D  D         I  P M     L RD    P +P++  K +P  ++SH V+
Sbjct: 245 ERLPTRSDVLDFFQKNFPDAI--PLMG-EQALMRDFFLLPAQPMISVKCSPFHLKSHCVL 301

Catalyzes the hydroxylation of L-kynurenine (L-Kyn) to form 3-hydroxy-L-kynurenine (L-3OHKyn). Required for synthesis of quinolinic acid, a neurotoxic NMDA receptor antagonist and potential endogenous inhibitor of NMDA receptor signaling in axonal targeting, synaptogenesis and apoptosis during brain development. Quinolinic acid may also affect NMDA receptor signaling in pancreatic beta cells, osteoblasts, myocardial cells, and the gastrointestinal tract.

Mus musculus (taxid: 10090)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 3

EC: .

EC: 9

>sp|Q86PM2|KMO_AEDAE Kynurenine 3-monooxygenase OS=Aedes aegypti GN=kh PE=1 SV=2

 Score =  168 bits (426), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 90/199 (45%), Positives = 125/199 (62%), Gaps = 20/199 (10%)

Query: 19  SLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGI 78
           SL A    K  + V+LYE REDIR + L  G+SINLALS RGR+AL  +GLED LL HGI
Sbjct: 30  SLFALHLGKKGHTVDLYEYREDIRTAELVIGRSINLALSARGRKALAEVGLEDALLQHGI 89

Query: 79  PMRARMIHGQNGKLREIPYDPVHNQV---------------ELEQYPDCNIYFQHKLINL 123
           PM+ RM+H   G  + +PYD   NQ                  E+YP+ ++YF  KL + 
Sbjct: 90  PMKGRMLHDLKGNRKIVPYDANTNQCIYSVGRKHLNEVLLDAAEKYPNIHLYFNKKLQSA 149

Query: 124 DVNSGNVTFY--RTEDNSETKITDNQLIIGADGAYSGVRKCLMKQSMFNYSQTYIEHGYM 181
           +++ G ++F    T++++ TK     LI+G DGAYS VRK ++K+  ++YSQTYIEHGY+
Sbjct: 150 NLDEGEMSFIDPTTKESTHTKA---DLIVGCDGAYSAVRKEIVKRPGYDYSQTYIEHGYL 206

Query: 182 ELCIPPSEDNEVWLYKNRL 200
           ELCIPP++D +  +  N L
Sbjct: 207 ELCIPPTKDGDFAMPHNYL 225

Catalyzes the hydroxylation of L-kynurenine (L-Kyn) to form 3-hydroxy-L-kynurenine (L-3OHKyn). Required for synthesis of quinolinic acid.

Aedes aegypti (taxid: 7159)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 3

EC: .

EC: 9

>sp|Q6DIZ8|KMO_XENTR Kynurenine 3-monooxygenase OS=Xenopus tropicalis GN=kmo PE=2 SV=1

 Score =  167 bits (422), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 104/231 (45%), Positives = 142/231 (61%), Gaps = 24/231 (10%)

Query: 4   NSKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREA 63
           N KK+V +VGGGLVGSL+AC FAK  ++V LYEAREDIR + +  G+SINLALS RG +A
Sbjct: 6   NRKKTVSVVGGGLVGSLNACFFAKKGFQVELYEAREDIRYARMVSGRSINLALSHRGLQA 65

Query: 64  LRRIGLEDKLLAHGIPMRARMIHGQNGKLREIPYDPVHNQV----------EL----EQY 109
           L+ +GL++K+ A GIPMRARMIH   G+   IPY   H  +          EL    E+Y
Sbjct: 66  LKAVGLDEKIAAMGIPMRARMIHSVKGRKSSIPYGKQHQYILSVDRANLNKELLSAAEKY 125

Query: 110 PDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAYSGVRKCLMKQSMF 169
            +  ++F+HKL + +V+SG +TF    +N   K  D  LI+G DGA+S VRK  M++S F
Sbjct: 126 SNVTMHFEHKLRDCNVDSGTMTFLNNMENIIEKKAD--LIVGCDGAFSVVRKQFMRKSRF 183

Query: 170 NYSQTYIEHGYMELCIPPSEDN--------EVWLYKNRLLSSVPEVRKRIS 212
           NYS  YI HGY EL IPP +           +W     ++ ++P + K  +
Sbjct: 184 NYSHVYIPHGYKELTIPPRKGEFAMEPNYLHIWPRNTFMMIALPNLDKSFT 234

Catalyzes the hydroxylation of L-kynurenine (L-Kyn) to form 3-hydroxy-L-kynurenine (L-3OHKyn). Required for synthesis of quinolinic acid.

Xenopus tropicalis (taxid: 8364)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 3

EC: .

EC: 9

>sp|O88867|KMO_RAT Kynurenine 3-monooxygenase OS=Rattus norvegicus GN=Kmo PE=1 SV=1

 Score =  157 bits (397), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 87/216 (40%), Positives = 122/216 (56%), Gaps = 24/216 (11%)

Query: 19  SLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGI 78
           +L+AC  AK  ++V++YEAREDIR +    G+SINLALS RGR+AL+ +GLED++++ G+
Sbjct: 21  ALNACFLAKRNFQVDVYEAREDIRVANFMRGRSINLALSYRGRQALKAVGLEDQIVSKGV 80

Query: 79  PMRARMIHGQNGKLREIPYDPVHNQV--------------ELEQYPDCNIYFQHKLINLD 124
           PM+ARMIH  +GK   IPY      +               +E YP+  ++F HKL    
Sbjct: 81  PMKARMIHSLSGKKSAIPYGNKSQYILSISREKLNKDLLTAVESYPNAKVHFGHKLSKCC 140

Query: 125 VNSGNVTFYRTEDNSETKITDNQLIIGADGAYSGVRKCLMKQSMFNYSQTYIEHGYMELC 184
              G +T      N   +     LI+G DGAYS VR  LMK+  F+YSQ YI HGYMEL 
Sbjct: 141 PEEGILTM--LGPNKVPRDITCDLIVGCDGAYSTVRAHLMKKPRFDYSQQYIPHGYMELT 198

Query: 185 IPPS------EDN--EVWLYKNRLLSSVPEVRKRIS 212
           IPP       E N   +W     ++ ++P + K  +
Sbjct: 199 IPPKNGEYAMEPNCLHIWPRNAFMMIALPNMDKSFT 234

Catalyzes the hydroxylation of L-kynurenine (L-Kyn) to form 3-hydroxy-L-kynurenine (L-3OHKyn). Required for synthesis of quinolinic acid, a neurotoxic NMDA receptor antagonist and potential endogenous inhibitor of NMDA receptor signaling in axonal targeting, synaptogenesis and apoptosis during brain development. Quinolinic acid may also affect NMDA receptor signaling in pancreatic beta cells, osteoblasts, myocardial cells, and the gastrointestinal tract.

Rattus norvegicus (taxid: 10116)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 3

EC: .

EC: 9

>sp|A1Z746|KMO_DROME Kynurenine 3-monooxygenase OS=Drosophila melanogaster GN=cn PE=2 SV=2

 Score =  157 bits (396), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 87/228 (38%), Positives = 129/228 (56%), Gaps = 25/228 (10%)

Query: 9   VVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIG 68
           V ++G GLVGSL+A  FA+    V+LYE REDIR + + +G+SINLALS RGR+AL  +G
Sbjct: 31  VAVIGAGLVGSLAALNFARMGNHVDLYEYREDIRQALVVQGRSINLALSQRGRKALAAVG 90

Query: 69  LEDKLLAHGIPMRARMIHGQNGKLREIPYDPVHNQV---------------ELEQYPDCN 113
           LE ++LA  IPMR RM+H   G    + YDP++NQ                  ++ P+  
Sbjct: 91  LEQEVLATAIPMRGRMLHDVRGNSSVVLYDPINNQCLYSVGRRQLNEVLLNACDKLPNIR 150

Query: 114 IYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAYSGVRKCLMKQSMFNYSQ 173
            +F+HKL + ++  G++ F      +     D  LI+G DGA+S VR+  ++   FNYSQ
Sbjct: 151 CHFEHKLTSANLREGSMEFRNPAKEAVAAHAD--LIVGCDGAFSSVRQNNVRLPGFNYSQ 208

Query: 174 TYIEHGYMELCIP--------PSEDNEVWLYKNRLLSSVPEVRKRISL 213
            YIE GY+ELCIP        P+    +W     ++ ++P   K  ++
Sbjct: 209 EYIETGYLELCIPSKSGDFQMPANYLHIWPRNTFMMIALPNQDKSFTV 256

Catalyzes the hydroxylation of L-kynurenine (L-Kyn) to form 3-hydroxy-L-kynurenine (L-3OHKyn). Required for synthesis of quinolinic acid.

Drosophila melanogaster (taxid: 7227)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 3

EC: .

EC: 9

>sp|B4MPK3|KTU_DROWI Protein kintoun OS=Drosophila willistoni GN=Ppi20 PE=3 SV=1

 Score =  149 bits (377), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 87/223 (39%), Positives = 130/223 (58%), Gaps = 28/223 (12%)

Query: 17  VGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRR--IGLEDKLL 74
           VGSL+A  FA+   +V+LYE R+D+R S L +G+SINLALS RGR+AL +  +GLE+++L
Sbjct: 774 VGSLAALYFARMGNQVDLYEYRDDVRKSELVQGRSINLALSQRGRKALSQLGLGLEEQVL 833

Query: 75  AHGIPMRARMIHGQNGKLREIPYDPVHNQV----------EL-----EQYPDCNIYFQHK 119
           +  IPM+ RM+H   GK   + YDP   Q           EL     +++P+   +F HK
Sbjct: 834 STAIPMKGRMLHNIQGKTSVVIYDPCFKQCLYSVGRKQLNELLLNACDKFPNIKCHFDHK 893

Query: 120 LINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAYSGVRKCLMKQSMFNYSQTYIEHG 179
           L   +V  G + F R+      K   + LI+G DGA+S +R+ L+K   FNY+Q YIE G
Sbjct: 894 LTKANVKEGQLEFKRSHSVEGVKAKAD-LIVGCDGAFSALRQNLIKLPGFNYTQEYIETG 952

Query: 180 YMELCIPPSEDNE---------VWLYKNRLLSSVPEVRKRISL 213
           Y+ELCI P++ NE         +W   N ++ ++P   K  ++
Sbjct: 953 YLELCI-PAKKNEFQMPPNYLHIWPRDNFMMIALPNQDKSFTV 994

Required for cytoplasmic pre-assembly of axonemal dyneins, thereby playing a central role in motility in cilia and flagella. Involved in pre-assembly of dynein arm complexes in the cytoplasm before intraflagellar transport loads them for the ciliary compartment.

Drosophila willistoni (taxid: 7260)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	379
443429475	224	kynurenine 3-monooxygenase-like protein	0.493	0.834	0.504	2e-47
58388029	486	AGAP005948-PA [Anopheles gambiae str. PE	0.503	0.393	0.483	4e-46
169646361	474	kynurenine 3-monooxygenase [Danio rerio]	0.612	0.489	0.405	5e-46
50416914	471	Kmo protein, partial [Danio rerio]	0.612	0.492	0.405	5e-46
383855019	452	PREDICTED: kynurenine 3-monooxygenase-li	0.511	0.429	0.462	8e-46
123889730	474	RecName: Full=Kynurenine 3-monooxygenase	0.546	0.436	0.432	9e-46
350417045	452	PREDICTED: kynurenine 3-monooxygenase-li	0.493	0.413	0.470	2e-45
149641677	469	PREDICTED: kynurenine 3-monooxygenase-li	0.538	0.434	0.434	2e-45
327287543	472	PREDICTED: kynurenine 3-monooxygenase-li	0.540	0.434	0.445	2e-45
24414608	486	kynurenine 3-monooxygenase [Anopheles st	0.503	0.393	0.478	4e-45

>gi|443429475|gb|AGC92653.1| kynurenine 3-monooxygenase-like protein [Heliconius erato]

 Score =  196 bits (498), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 103/204 (50%), Positives = 136/204 (66%), Gaps = 17/204 (8%)

Query: 6   KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALR 65
           K ++ +VGGGLVGSL A   AK  + V+LYE REDIR + L  G+SINLALSVRGR+AL+
Sbjct: 11  KLNIAVVGGGLVGSLEAIYLAKRGHRVSLYEYREDIRQTPLVRGRSINLALSVRGRKALK 70

Query: 66  RIGLEDKLL-AHGIPMRARMIHGQNGKLREIPYDPVHNQV---------------ELEQY 109
            +G+ED ++  HGIPM+ARMIH  +G    IPYD   NQ                E E Y
Sbjct: 71  GVGVEDHMVNEHGIPMKARMIHRPDGTTYAIPYDSRTNQCIYSVGRNYLNSVLLKESENY 130

Query: 110 PDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAYSGVRKCLMKQSMF 169
            +   YF HKL+  ++ +G++TF +  D+ +T   +  LIIGADGA+S VRK +MKQ +F
Sbjct: 131 DNVVRYFNHKLVQSNLRNGSLTFLKM-DSKDTVQVNADLIIGADGAFSAVRKEMMKQPLF 189

Query: 170 NYSQTYIEHGYMELCIPPSEDNEV 193
           ++SQ YIEHGY+ELCIP S+D EV
Sbjct: 190 DFSQQYIEHGYLELCIPASQDGEV 213

Source: Heliconius erato

Species: Heliconius erato

Genus: Heliconius

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|58388029|ref|XP_315983.2| AGAP005948-PA [Anopheles gambiae str. PEST] gi|74839748|sp|Q7Q6A7.2|KMO_ANOGA RecName: Full=Kynurenine 3-monooxygenase; AltName: Full=Kynurenine 3-hydroxylase gi|55238759|gb|EAA11712.2| AGAP005948-PA [Anopheles gambiae str. PEST]

 Score =  191 bits (486), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 100/207 (48%), Positives = 130/207 (62%), Gaps = 16/207 (7%)

Query: 9   VVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIG 68
           V IVGGGLVGSL A    K  +EVNLYE REDIR + L  G+SINLALS RGR AL  +G
Sbjct: 24  VAIVGGGLVGSLLALHLGKKGHEVNLYEYREDIRTAELVIGRSINLALSARGRRALAEVG 83

Query: 69  LEDKLLAHGIPMRARMIHGQNGKLREIPYDPVHNQV---------------ELEQYPDCN 113
           LED LL HGIPM  RM+H  NGK + +PYD   NQ                  E+YP+ +
Sbjct: 84  LEDALLNHGIPMSGRMLHDVNGKCKIVPYDANTNQCIYSVGRKHLNEVLLNAAEKYPNIH 143

Query: 114 IYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAYSGVRKCLMKQSMFNYSQ 173
           ++F HKL++ +++ GN++        + K     LI+G DGAYS VRK ++K+  +++SQ
Sbjct: 144 LHFNHKLVSANLDEGNLSMVDPV-TKDVKSARADLIVGCDGAYSAVRKEIVKRPRYDFSQ 202

Query: 174 TYIEHGYMELCIPPSEDNEVWLYKNRL 200
           TYIEHGY+ELCIPP+   E  +  N L
Sbjct: 203 TYIEHGYLELCIPPTAGGEFAMPHNYL 229

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|169646361|ref|NP_001035396.2| kynurenine 3-monooxygenase [Danio rerio] gi|220679177|emb|CAX13064.1| kynurenine 3-monooxygenase [Danio rerio]

 Score =  191 bits (485), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 105/259 (40%), Positives = 154/259 (59%), Gaps = 27/259 (10%)

Query: 4   NSKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREA 63
           + +K + +VGGGLVGSL+AC  AK  ++V +YE+REDIR + + +G+SINLALS RGR+A
Sbjct: 14  SKRKVIAVVGGGLVGSLNACFLAKRGFDVEVYESREDIRQAKVVKGRSINLALSHRGRQA 73

Query: 64  LRRIGLEDKLLAHGIPMRARMIHGQNGKLREIPY----------DPVHNQVEL----EQY 109
           L+ +G+EDK+++ GIPM ARMIH  NGK   IPY          D  +   EL    E Y
Sbjct: 74  LKHVGMEDKIVSKGIPMHARMIHNVNGKRSPIPYGKKGQYILSVDRANLNKELLTAAEAY 133

Query: 110 PDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAYSGVRKCLMKQSMF 169
           P+  + F HKL +    +G +TF  + D  +T+ T   LI+G DGA+S VRK  ++QS F
Sbjct: 134 PNTRLNFNHKLHDWSPKTGTMTFIGS-DGQKTE-TQADLIVGCDGAFSAVRKQFLRQSRF 191

Query: 170 NYSQTYIEHGYMELCIPPSEDN--------EVWLYKNRLLSSVPEVRKRISLRAQSLKSL 221
           NYSQTYI HGYMEL +PP + +         +W     ++ ++P + +  +         
Sbjct: 192 NYSQTYIPHGYMELTMPPKDGDFAMEPNYLHIWPRNTFMMIALPNLDR--TFTCTLFMPF 249

Query: 222 MNFPRADQGGDKRDCLLHE 240
            +F +  + GD+  C  H+
Sbjct: 250 EDFEKI-RTGDELLCFFHK 267

Source: Danio rerio

Species: Danio rerio

Genus: Danio

Family: Cyprinidae

Order: Cypriniformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|50416914|gb|AAH77154.1| Kmo protein, partial [Danio rerio]

 Score =  191 bits (485), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 105/259 (40%), Positives = 154/259 (59%), Gaps = 27/259 (10%)

Query: 4   NSKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREA 63
           + +K + +VGGGLVGSL+AC  AK  ++V +YE+REDIR + + +G+SINLALS RGR+A
Sbjct: 11  SKRKVIAVVGGGLVGSLNACFLAKRGFDVEVYESREDIRQAKVVKGRSINLALSHRGRQA 70

Query: 64  LRRIGLEDKLLAHGIPMRARMIHGQNGKLREIPY----------DPVHNQVEL----EQY 109
           L+ +G+EDK+++ GIPM ARMIH  NGK   IPY          D  +   EL    E Y
Sbjct: 71  LKHVGMEDKIVSKGIPMHARMIHNVNGKRSPIPYGKKGQYILSVDRANLNKELLTAAEAY 130

Query: 110 PDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAYSGVRKCLMKQSMF 169
           P+  + F HKL +    +G +TF  + D  +T+ T   LI+G DGA+S VRK  ++QS F
Sbjct: 131 PNTRLNFNHKLHDWSPKTGTMTFIGS-DGQKTE-TQADLIVGCDGAFSAVRKQFLRQSRF 188

Query: 170 NYSQTYIEHGYMELCIPPSEDN--------EVWLYKNRLLSSVPEVRKRISLRAQSLKSL 221
           NYSQTYI HGYMEL +PP + +         +W     ++ ++P + +  +         
Sbjct: 189 NYSQTYIPHGYMELTMPPKDGDFAMEPNYLHIWPRNTFMMIALPNLDR--TFTCTLFMPF 246

Query: 222 MNFPRADQGGDKRDCLLHE 240
            +F +  + GD+  C  H+
Sbjct: 247 EDFEKI-RTGDELLCFFHK 264

Source: Danio rerio

Species: Danio rerio

Genus: Danio

Family: Cyprinidae

Order: Cypriniformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|383855019|ref|XP_003703017.1| PREDICTED: kynurenine 3-monooxygenase-like [Megachile rotundata]

 Score =  190 bits (483), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 99/214 (46%), Positives = 138/214 (64%), Gaps = 20/214 (9%)

Query: 3   CNSKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGRE 62
            + K  + I GGGLVG+L+AC FAK  + V +YE R D+R    + G+SI+LALSVRGRE
Sbjct: 4   ADRKPRIAIAGGGLVGALAACFFAKRGHRVAVYEYRPDVREED-TWGQSIDLALSVRGRE 62

Query: 63  ALRRIGLEDKLLAHGIPMRARMIHGQNGKLREIPYDPVHNQV--------------ELEQ 108
           ALR++GLE+ LL HGIPMR RM+H ++GKL+EI YD   N +                E+
Sbjct: 63  ALRKVGLEETLLQHGIPMRGRMLHNKDGKLKEIIYDGKGNCIYSVSRRYLNVVLLNAAEK 122

Query: 109 YPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQ--LIIGADGAYSGVRKCLMKQ 166
           YP+ ++YF  K+I+ D+    +T    +D    +I + Q  LIIGADGA+S +RK + ++
Sbjct: 123 YPEVSLYFNKKVIDADLEEAKLT---VQDTITKEIEEVQADLIIGADGAHSRIRKVMTRR 179

Query: 167 SMFNYSQTYIEHGYMELCIPPSEDNEVWLYKNRL 200
             FNYSQTYIEHGY+EL +PP  +N+  +  N L
Sbjct: 180 PRFNYSQTYIEHGYVELHVPPGRNNQFVMSNNHL 213

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|123889730|sp|Q1RLY6.1|KMO_DANRE RecName: Full=Kynurenine 3-monooxygenase; AltName: Full=Kynurenine 3-hydroxylase gi|92096447|gb|AAI15228.1| Kynurenine 3-monooxygenase [Danio rerio]

 Score =  190 bits (483), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 100/231 (43%), Positives = 144/231 (62%), Gaps = 24/231 (10%)

Query: 4   NSKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREA 63
           + +K + +VGGGLVGSL+AC  AK  ++V +YE+REDIR + + +G+SINLALS RGR+A
Sbjct: 14  SKRKVIAVVGGGLVGSLNACFLAKRGFDVEVYESREDIRQAKVVKGRSINLALSHRGRQA 73

Query: 64  LRRIGLEDKLLAHGIPMRARMIHGQNGKLREIPY----------DPVHNQVEL----EQY 109
           L+ +G+EDK+++ GIPM ARMIH  NGK   IPY          D  +   EL    E Y
Sbjct: 74  LKHVGMEDKIISKGIPMHARMIHNVNGKRSPIPYGKKGQYILSVDRANLNKELLTAAEAY 133

Query: 110 PDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAYSGVRKCLMKQSMF 169
           P+  + F HKL +    +G +TF  + D  +T+ T   LI+G DGA+S VRK  ++QS F
Sbjct: 134 PNTRLNFNHKLHDWSPKTGTMTFIGS-DGQKTE-TQADLIVGCDGAFSAVRKQFLRQSRF 191

Query: 170 NYSQTYIEHGYMELCIPPSEDN--------EVWLYKNRLLSSVPEVRKRIS 212
           NYSQTYI HGYMEL +PP + +         +W     ++ ++P + +  +
Sbjct: 192 NYSQTYIPHGYMELTMPPKDGDFAMEPNYLHIWPRNTFMMIALPNLDRTFT 242

Source: Danio rerio

Species: Danio rerio

Genus: Danio

Family: Cyprinidae

Order: Cypriniformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|350417045|ref|XP_003491229.1| PREDICTED: kynurenine 3-monooxygenase-like [Bombus impatiens]

 Score =  189 bits (481), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 96/204 (47%), Positives = 138/204 (67%), Gaps = 17/204 (8%)

Query: 4   NSKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREA 63
           N K  + IVGGGLVGSL+AC FAK  + VN+YE R D R    S G+SI+LA+S+RGREA
Sbjct: 5   NRKSRIAIVGGGLVGSLAACYFAKRGHSVNIYEYRADTRVE-YSRGQSIDLAVSIRGREA 63

Query: 64  LRRIGLEDKLLAHGIPMRARMIHGQNGKLREIPYDPVH------------NQVEL---EQ 108
           LR +GLE+ +++HGI M  RMIH ++G L++IPYD V+            N V L   ++
Sbjct: 64  LRAVGLEEAVISHGIAMHGRMIHNKDGTLKDIPYDIVNGNCIYSVSRRRLNIVLLNAADK 123

Query: 109 YPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAYSGVRKCLMKQSM 168
           YP+ N++F  K+++ D+++G +    T+    T+     LIIGADGAYS +R+ + K+ +
Sbjct: 124 YPEVNLFFNKKVVDADLDNGELKILDTK-TQRTEEVKADLIIGADGAYSTIRRVMAKRPL 182

Query: 169 FNYSQTYIEHGYMELCIPPSEDNE 192
           FN+SQTYIEHGY+EL +P  ++NE
Sbjct: 183 FNFSQTYIEHGYVELFVPIGKNNE 206

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|149641677|ref|XP_001514157.1| PREDICTED: kynurenine 3-monooxygenase-like [Ornithorhynchus anatinus]

 Score =  189 bits (480), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 99/228 (43%), Positives = 140/228 (61%), Gaps = 24/228 (10%)

Query: 7   KSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRR 66
           + V ++GGGLVG+++AC  AK  ++V++YEARED+R + ++ G+SINLALS RGR+ALR 
Sbjct: 9   QKVAVIGGGLVGNVNACFLAKRGFQVDIYEAREDLRVAKVARGRSINLALSHRGRQALRS 68

Query: 67  IGLEDKLLAHGIPMRARMIHGQNGKLREIPYDPVHNQV--------------ELEQYPDC 112
           IGLED++++ GIPMR+RMIH  +GK   IPY   +  +              E+E+YP+ 
Sbjct: 69  IGLEDQVVSQGIPMRSRMIHSLSGKKSAIPYGKKNQYILSISREILNKELLTEVEKYPNA 128

Query: 113 NIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAYSGVRKCLMKQSMFNYS 172
            ++F HKL+N     G +T   + D       D  LI+G DGAYS VRK L+KQ  FN+S
Sbjct: 129 KVHFGHKLLNCRPEEGKLTVLGSNDGPVEIACD--LIVGCDGAYSTVRKQLLKQPRFNFS 186

Query: 173 QTYIEHGYMELCIPPS------EDNE--VWLYKNRLLSSVPEVRKRIS 212
           Q YI HGYMEL IPP       E N   +W     ++ ++P   K  +
Sbjct: 187 QQYISHGYMELTIPPKNGEFAMEPNSLHIWPRNTFMMIALPNANKSFT 234

Source: Ornithorhynchus anatinus

Species: Ornithorhynchus anatinus

Genus: Ornithorhynchus

Family: Ornithorhynchidae

Order: Monotremata

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|327287543|ref|XP_003228488.1| PREDICTED: kynurenine 3-monooxygenase-like [Anolis carolinensis]

 Score =  189 bits (479), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 102/229 (44%), Positives = 142/229 (62%), Gaps = 24/229 (10%)

Query: 6   KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALR 65
           +K V I+GGGLVGSL+AC FAK  + V LYE+R DIR S    G+SINLALS RGR+AL+
Sbjct: 8   RKKVAIIGGGLVGSLNACFFAKRGFVVELYESRPDIRTSNAIRGRSINLALSHRGRQALK 67

Query: 66  RIGLEDKLLAHGIPMRARMIHGQNGKLREIPY----------DPVHNQVEL----EQYPD 111
            +G+ED++++ GIPMRAR IH  +GK   IPY          D  +   EL    E+YP+
Sbjct: 68  AVGMEDQIVSKGIPMRARRIHTLSGKQYAIPYGTKKQYILSVDRANLNKELLNAAEKYPN 127

Query: 112 CNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAYSGVRKCLMKQSMFNY 171
             +YF HKL++ +V SG + F R++        D  LI+G DGA+S VRK  ++Q+ FNY
Sbjct: 128 TTLYFGHKLLHCNVESGLLDFSRSDQTRREVSCD--LIVGCDGAFSTVRKQFVRQTRFNY 185

Query: 172 SQTYIEHGYMELCIPPSEDN--------EVWLYKNRLLSSVPEVRKRIS 212
           SQTYI HGY EL IPP + +         +W   + ++ ++P + K  +
Sbjct: 186 SQTYITHGYKELKIPPKDGDFAMEPNFLHIWPRNSFMMIALPNMDKSFT 234

Source: Anolis carolinensis

Species: Anolis carolinensis

Genus: Anolis

Family: Iguanidae

Order: Squamata

Phylum: Chordata

Superkingdom: Eukaryota

>gi|24414608|gb|AAL40890.1| kynurenine 3-monooxygenase [Anopheles stephensi]

 Score =  188 bits (477), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 99/207 (47%), Positives = 129/207 (62%), Gaps = 16/207 (7%)

Query: 9   VVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIG 68
           V IVGGGLVGSL A    K  +EVNLYE REDIR + L  G+SINLALS RGR AL  +G
Sbjct: 23  VAIVGGGLVGSLLALHLGKKGHEVNLYEYREDIRTAELVIGRSINLALSARGRRALAEVG 82

Query: 69  LEDKLLAHGIPMRARMIHGQNGKLREIPYDPVHNQV---------------ELEQYPDCN 113
           LE+ LL HGIPM  RM+H  NG  + +PYD   NQ                  E+YP+ +
Sbjct: 83  LEEALLDHGIPMSGRMLHDVNGNRKIVPYDGNTNQCIYSVGRKHLNEVLLNAAEKYPNIH 142

Query: 114 IYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAYSGVRKCLMKQSMFNYSQ 173
           ++F HKL++ +++ GN++        E K     LI+G DGAYS VRK ++K+  +++SQ
Sbjct: 143 LHFNHKLVSANLDEGNLSMVDPL-TKEVKSARADLIVGCDGAYSAVRKEIVKRPRYDFSQ 201

Query: 174 TYIEHGYMELCIPPSEDNEVWLYKNRL 200
           TYIEHGY+ELCIPP+   E  +  N L
Sbjct: 202 TYIEHGYLELCIPPTASGEFAMPHNYL 228

Source: Anopheles stephensi

Species: Anopheles stephensi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	379
UNIPROTKB|Q7Q6A7	486	kh "Kynurenine 3-monooxygenase	0.469	0.366	0.469	6.1e-39
ZFIN|ZDB-GENE-030424-4	474	kmo "kynurenine 3-monooxygenas	0.464	0.371	0.471	1.3e-38
UNIPROTKB|Q6DIZ8	473	kmo "Kynurenine 3-monooxygenas	0.432	0.346	0.488	1.5e-37
UNIPROTKB|Q86PM2	476	kh "Kynurenine 3-monooxygenase	0.469	0.373	0.458	2.4e-37
RGD|620610	478	Kmo "kynurenine 3-monooxygenas	0.432	0.343	0.45	8.2e-37
UNIPROTKB|E1B2G6	477	KMO "Kynurenine 3-monooxygenas	0.432	0.343	0.472	4.4e-36
UNIPROTKB|F6PNZ5	433	KMO "Uncharacterized protein"	0.432	0.378	0.472	4.4e-36
UNIPROTKB|O15229	486	KMO "Kynurenine 3-monooxygenas	0.432	0.337	0.455	4e-35
UNIPROTKB|E1BN59	480	KMO "Uncharacterized protein"	0.432	0.341	0.455	1.1e-34
UNIPROTKB|Q9MZS9	471	KMO "Kynurenine 3-monooxygenas	0.432	0.348	0.45	1.1e-34

UNIPROTKB|Q7Q6A7 kh "Kynurenine 3-monooxygenase" [Anopheles gambiae (taxid:7165)]

 Score = 416 (151.5 bits), Expect = 6.1e-39, P = 6.1e-39
 Identities = 91/194 (46%), Positives = 122/194 (62%)

Query:    22 ACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMR 81
             A    K  +EVNLYE REDIR + L  G+SINLALS RGR AL  +GLED LL HGIPM 
Sbjct:    37 ALHLGKKGHEVNLYEYREDIRTAELVIGRSINLALSARGRRALAEVGLEDALLNHGIPMS 96

Query:    82 ARMIHGQNGKLREIPYDP-----------VH-NQVEL---EQYPDCNIYFQHKLINLDVN 126
              RM+H  NGK + +PYD             H N+V L   E+YP+ +++F HKL++ +++
Sbjct:    97 GRMLHDVNGKCKIVPYDANTNQCIYSVGRKHLNEVLLNAAEKYPNIHLHFNHKLVSANLD 156

Query:   127 SGNVTFYRTEDNSETKITDNQLIIGADGAYSGVRKCLMKQSMFNYSQTYIEHGYMELCIP 186
              GN++        + K     LI+G DGAYS VRK ++K+  +++SQTYIEHGY+ELCIP
Sbjct:   157 EGNLSMVDPV-TKDVKSARADLIVGCDGAYSAVRKEIVKRPRYDFSQTYIEHGYLELCIP 215

Query:   187 PSEDNEVWLYKNRL 200
             P+   E  +  N L
Sbjct:   216 PTAGGEFAMPHNYL 229

GO:0004502 "kynurenine 3-monooxygenase activity" evidence=ISS

GO:0005741 "mitochondrial outer membrane" evidence=ISS

GO:0019674 "NAD metabolic process" evidence=ISS

ZFIN|ZDB-GENE-030424-4 kmo "kynurenine 3-monooxygenase" [Danio rerio (taxid:7955)]

 Score = 413 (150.4 bits), Expect = 1.3e-38, P = 1.3e-38
 Identities = 91/193 (47%), Positives = 123/193 (63%)

Query:    22 ACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMR 81
             AC  AK  ++V +YE+REDIR + + +G+SINLALS RGR+AL+ +G+EDK+++ GIPM 
Sbjct:    32 ACFLAKRGFDVEVYESREDIRQAKVVKGRSINLALSHRGRQALKHVGMEDKIISKGIPMH 91

Query:    82 ARMIHGQNGKLREIPY----------DPVHNQVEL----EQYPDCNIYFQHKLINLDVNS 127
             ARMIH  NGK   IPY          D  +   EL    E YP+  + F HKL +    +
Sbjct:    92 ARMIHNVNGKRSPIPYGKKGQYILSVDRANLNKELLTAAEAYPNTRLNFNHKLHDWSPKT 151

Query:   128 GNVTFYRTEDNSETKITDNQLIIGADGAYSGVRKCLMKQSMFNYSQTYIEHGYMELCIPP 187
             G +TF  + D  +T+ T   LI+G DGA+S VRK  ++QS FNYSQTYI HGYMEL +PP
Sbjct:   152 GTMTFIGS-DGQKTE-TQADLIVGCDGAFSAVRKQFLRQSRFNYSQTYIPHGYMELTMPP 209

Query:   188 SEDNEVWLYKNRL 200
              +D +  +  N L
Sbjct:   210 -KDGDFAMEPNYL 221

GO:0008152 "metabolic process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0004502 "kynurenine 3-monooxygenase activity" evidence=IEA;ISS

GO:0005741 "mitochondrial outer membrane" evidence=IEA;ISS

GO:0019674 "NAD metabolic process" evidence=ISS

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0004497 "monooxygenase activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0019363 "pyridine nucleotide biosynthetic process" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|Q6DIZ8 kmo "Kynurenine 3-monooxygenase" [Xenopus (Silurana) tropicalis (taxid:8364)]

 Score = 403 (146.9 bits), Expect = 1.5e-37, P = 1.5e-37
 Identities = 88/180 (48%), Positives = 115/180 (63%)

Query:    22 ACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMR 81
             AC FAK  ++V LYEAREDIR + +  G+SINLALS RG +AL+ +GL++K+ A GIPMR
Sbjct:    24 ACFFAKKGFQVELYEAREDIRYARMVSGRSINLALSHRGLQALKAVGLDEKIAAMGIPMR 83

Query:    82 ARMIHGQNGKLREIPYDPVHNQV----------EL----EQYPDCNIYFQHKLINLDVNS 127
             ARMIH   G+   IPY   H  +          EL    E+Y +  ++F+HKL + +V+S
Sbjct:    84 ARMIHSVKGRKSSIPYGKQHQYILSVDRANLNKELLSAAEKYSNVTMHFEHKLRDCNVDS 143

Query:   128 GNVTFYRTEDNSETKITDNQLIIGADGAYSGVRKCLMKQSMFNYSQTYIEHGYMELCIPP 187
             G +TF    +N   K  D  LI+G DGA+S VRK  M++S FNYS  YI HGY EL IPP
Sbjct:   144 GTMTFLNNMENIIEKKAD--LIVGCDGAFSVVRKQFMRKSRFNYSHVYIPHGYKELTIPP 201

GO:0004502 "kynurenine 3-monooxygenase activity" evidence=ISS

GO:0005741 "mitochondrial outer membrane" evidence=ISS

GO:0019674 "NAD metabolic process" evidence=ISS

UNIPROTKB|Q86PM2 kh "Kynurenine 3-monooxygenase" [Aedes aegypti (taxid:7159)]

 Score = 401 (146.2 bits), Expect = 2.4e-37, P = 2.4e-37
 Identities = 89/194 (45%), Positives = 121/194 (62%)

Query:    22 ACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMR 81
             A    K  + V+LYE REDIR + L  G+SINLALS RGR+AL  +GLED LL HGIPM+
Sbjct:    33 ALHLGKKGHTVDLYEYREDIRTAELVIGRSINLALSARGRKALAEVGLEDALLQHGIPMK 92

Query:    82 ARMIHGQNGKLREIPYDP-----------VH-NQVEL---EQYPDCNIYFQHKLINLDVN 126
              RM+H   G  + +PYD             H N+V L   E+YP+ ++YF  KL + +++
Sbjct:    93 GRMLHDLKGNRKIVPYDANTNQCIYSVGRKHLNEVLLDAAEKYPNIHLYFNKKLQSANLD 152

Query:   127 SGNVTFYRTEDNSETKITDNQLIIGADGAYSGVRKCLMKQSMFNYSQTYIEHGYMELCIP 186
              G ++F        T  T   LI+G DGAYS VRK ++K+  ++YSQTYIEHGY+ELCIP
Sbjct:   153 EGEMSFIDPTTKESTH-TKADLIVGCDGAYSAVRKEIVKRPGYDYSQTYIEHGYLELCIP 211

Query:   187 PSEDNEVWLYKNRL 200
             P++D +  +  N L
Sbjct:   212 PTKDGDFAMPHNYL 225

GO:0004502 "kynurenine 3-monooxygenase activity" evidence=IDA

GO:0005741 "mitochondrial outer membrane" evidence=ISS

GO:0019674 "NAD metabolic process" evidence=IDA

RGD|620610 Kmo "kynurenine 3-monooxygenase (kynurenine 3-hydroxylase)" [Rattus norvegicus (taxid:10116)]

 Score = 371 (135.7 bits), Expect = 8.2e-37, Sum P(2) = 8.2e-37
 Identities = 81/180 (45%), Positives = 110/180 (61%)

Query:    22 ACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMR 81
             AC  AK  ++V++YEAREDIR +    G+SINLALS RGR+AL+ +GLED++++ G+PM+
Sbjct:    24 ACFLAKRNFQVDVYEAREDIRVANFMRGRSINLALSYRGRQALKAVGLEDQIVSKGVPMK 83

Query:    82 ARMIHGQNGKLREIPY------------DPVHNQV--ELEQYPDCNIYFQHKLINLDVNS 127
             ARMIH  +GK   IPY            + ++  +   +E YP+  ++F HKL       
Sbjct:    84 ARMIHSLSGKKSAIPYGNKSQYILSISREKLNKDLLTAVESYPNAKVHFGHKLSKCCPEE 143

Query:   128 GNVTFYRTEDNSETKITDNQLIIGADGAYSGVRKCLMKQSMFNYSQTYIEHGYMELCIPP 187
             G +T      N   +     LI+G DGAYS VR  LMK+  F+YSQ YI HGYMEL IPP
Sbjct:   144 GILTMLGP--NKVPRDITCDLIVGCDGAYSTVRAHLMKKPRFDYSQQYIPHGYMELTIPP 201

GO:0004502 "kynurenine 3-monooxygenase activity" evidence=ISO;IDA

GO:0005739 "mitochondrion" evidence=ISO;IDA

GO:0005741 "mitochondrial outer membrane" evidence=IDA

GO:0005743 "mitochondrial inner membrane" evidence=IEA;ISO

GO:0009435 "NAD biosynthetic process" evidence=IEA

GO:0009651 "response to salt stress" evidence=IEA;ISO

GO:0016021 "integral to membrane" evidence=IEA

GO:0016174 "NAD(P)H oxidase activity" evidence=IEA;ISO

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0019441 "tryptophan catabolic process to kynurenine" evidence=IDA

GO:0019674 "NAD metabolic process" evidence=IDA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA;ISO

GO:0070189 "kynurenine metabolic process" evidence=ISO

UNIPROTKB|E1B2G6 KMO "Kynurenine 3-monooxygenase" [Canis lupus familiaris (taxid:9615)]

 Score = 389 (142.0 bits), Expect = 4.4e-36, P = 4.4e-36
 Identities = 85/180 (47%), Positives = 113/180 (62%)

Query:    22 ACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMR 81
             AC  AK  ++V++YEAREDIR +  + G+SINLALS RGR+AL  IGLED++++ GIPMR
Sbjct:    24 ACFLAKKNFQVDVYEAREDIRVAKFARGRSINLALSYRGRQALNAIGLEDQIVSQGIPMR 83

Query:    82 ARMIHGQNGKLREIPYDPVHNQV--------------ELEQYPDCNIYFQHKLINLDVNS 127
             ARMIH  +GK   IPY      +               +E+YP+  ++F H+L+  +   
Sbjct:    84 ARMIHSLSGKKSAIPYGTKSQYILSISRENLNKDLLTAVEKYPNVKVHFGHRLLKCNPEE 143

Query:   128 GNVTFYRTEDNSETKITDNQLIIGADGAYSGVRKCLMKQSMFNYSQTYIEHGYMELCIPP 187
             G +T   + D     IT + LI+G DGAYS VR  LMK+  F+YSQ YI HGYMEL IPP
Sbjct:   144 GVITVVGS-DEVPVDITYD-LIVGCDGAYSTVRTYLMKKPRFDYSQQYIPHGYMELTIPP 201

GO:0070189 "kynurenine metabolic process" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0016174 "NAD(P)H oxidase activity" evidence=IEA

GO:0009651 "response to salt stress" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0004502 "kynurenine 3-monooxygenase activity" evidence=IEA

UNIPROTKB|F6PNZ5 KMO "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 389 (142.0 bits), Expect = 4.4e-36, P = 4.4e-36
 Identities = 85/180 (47%), Positives = 113/180 (62%)

Query:    22 ACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMR 81
             AC  AK  ++V++YEAREDIR +  + G+SINLALS RGR+AL  IGLED++++ GIPMR
Sbjct:    24 ACFLAKKNFQVDVYEAREDIRVAKFARGRSINLALSYRGRQALNAIGLEDQIVSQGIPMR 83

Query:    82 ARMIHGQNGKLREIPYDPVHNQV--------------ELEQYPDCNIYFQHKLINLDVNS 127
             ARMIH  +GK   IPY      +               +E+YP+  ++F H+L+  +   
Sbjct:    84 ARMIHSLSGKKSAIPYGTKSQYILSISRENLNKDLLTAVEKYPNVKVHFGHRLLKCNPEE 143

Query:   128 GNVTFYRTEDNSETKITDNQLIIGADGAYSGVRKCLMKQSMFNYSQTYIEHGYMELCIPP 187
             G +T   + D     IT + LI+G DGAYS VR  LMK+  F+YSQ YI HGYMEL IPP
Sbjct:   144 GVITVVGS-DEVPVDITYD-LIVGCDGAYSTVRTYLMKKPRFDYSQQYIPHGYMELTIPP 201

GO:0016491 "oxidoreductase activity" evidence=IEA

UNIPROTKB|O15229 KMO "Kynurenine 3-monooxygenase" [Homo sapiens (taxid:9606)]

 Score = 380 (138.8 bits), Expect = 4.0e-35, P = 4.0e-35
 Identities = 82/180 (45%), Positives = 114/180 (63%)

Query:    22 ACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMR 81
             AC  AK  +++++YEARED R +  + G+SINLALS RGR+AL+ +GLED++++ GIPMR
Sbjct:    24 ACFLAKRNFQIDVYEAREDTRVATFTRGRSINLALSHRGRQALKAVGLEDQIVSQGIPMR 83

Query:    82 ARMIHGQNGKLREIPYDPVHNQV----------EL----EQYPDCNIYFQHKLINLDVNS 127
             ARMIH  +GK   IPY      +          +L    E+YP+  ++F H+L+  +   
Sbjct:    84 ARMIHSLSGKKSAIPYGTKSQYILSVSRENLNKDLLTAAEKYPNVKMHFNHRLLKCNPEE 143

Query:   128 GNVTFYRTEDNSETKITDNQLIIGADGAYSGVRKCLMKQSMFNYSQTYIEHGYMELCIPP 187
             G +T   + D     +T + LI+G DGAYS VR  LMK+  F+YSQ YI HGYMEL IPP
Sbjct:   144 GMITVLGS-DKVPKDVTCD-LIVGCDGAYSTVRSHLMKKPRFDYSQQYIPHGYMELTIPP 201

GO:0016021 "integral to membrane" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0019441 "tryptophan catabolic process to kynurenine" evidence=IEA

GO:0009435 "NAD biosynthetic process" evidence=IEA

GO:0070189 "kynurenine metabolic process" evidence=IDA

GO:0004502 "kynurenine 3-monooxygenase activity" evidence=IDA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IDA

GO:0016174 "NAD(P)H oxidase activity" evidence=IDA

GO:0009651 "response to salt stress" evidence=IDA

GO:0005741 "mitochondrial outer membrane" evidence=ISS

GO:0005829 "cytosol" evidence=TAS

GO:0006569 "tryptophan catabolic process" evidence=TAS

GO:0034641 "cellular nitrogen compound metabolic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

UNIPROTKB|E1BN59 KMO "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 376 (137.4 bits), Expect = 1.1e-34, P = 1.1e-34
 Identities = 82/180 (45%), Positives = 113/180 (62%)

Query:    22 ACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMR 81
             AC  AK  ++V++YEAREDIR +  + G+SINLALS RGR+AL+ IGLED++++ GIPMR
Sbjct:    24 ACFLAKRNFQVDIYEAREDIRVTKSARGRSINLALSYRGRQALKAIGLEDQVVSQGIPMR 83

Query:    82 ARMIHGQNGKLREIPYDPVHNQV--------------ELEQYPDCNIYFQHKLINLDVNS 127
             ARMIH  +GK   IPY      +               +E+Y +  ++F H+L+  +   
Sbjct:    84 ARMIHSLSGKKSAIPYGTKSQYILSISRENLNKDLLTAVEKYSNAKVHFGHRLVKCNPEK 143

Query:   128 GNVTFYRTEDNSETKITDNQLIIGADGAYSGVRKCLMKQSMFNYSQTYIEHGYMELCIPP 187
             G +T    +D     +T + LI+G DGA+S VR  LMK+  F+YSQ YI HGYMEL IPP
Sbjct:   144 GVITVLG-QDKVPKDVTCD-LIVGCDGAFSTVRTYLMKKPRFDYSQQYIPHGYMELNIPP 201

GO:0070189 "kynurenine metabolic process" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0016174 "NAD(P)H oxidase activity" evidence=IEA

GO:0009651 "response to salt stress" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0004502 "kynurenine 3-monooxygenase activity" evidence=IEA

UNIPROTKB|Q9MZS9 KMO "Kynurenine 3-monooxygenase" [Sus scrofa (taxid:9823)]

 Score = 376 (137.4 bits), Expect = 1.1e-34, P = 1.1e-34
 Identities = 81/180 (45%), Positives = 112/180 (62%)

Query:    22 ACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMR 81
             AC  AK  ++V++YE+REDIR +  + G+SINLALS RGR+AL+ IGLED++++ GIPMR
Sbjct:    24 ACFLAKRNFQVDVYESREDIRMAEFARGRSINLALSYRGRQALKAIGLEDQIVSQGIPMR 83

Query:    82 ARMIHGQNGKLREIPYDPVHNQV--------------ELEQYPDCNIYFQHKLINLDVNS 127
             ARMIH  +GK   IPY      +               +E+YP+  ++F H+L+     +
Sbjct:    84 ARMIHSLSGKKSAIPYGTKSQYILSISRENLNKDLLTAVEKYPNAKVHFGHQLLKCRPET 143

Query:   128 GNVTFYRTEDNSETKITDNQLIIGADGAYSGVRKCLMKQSMFNYSQTYIEHGYMELCIPP 187
             G +T    +   +    D  LI+G DGAYS VR  L+K+  F+YSQ YI HGYMEL IPP
Sbjct:   144 GVITLLGPDKVPKDIACD--LILGCDGAYSTVRTHLVKKPRFDYSQQYIPHGYMELTIPP 201

GO:0005741 "mitochondrial outer membrane" evidence=ISS

GO:0004502 "kynurenine 3-monooxygenase activity" evidence=ISS

GO:0019674 "NAD metabolic process" evidence=ISS

GO:0009435 "NAD biosynthetic process" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	379
COG0654	387	COG0654, UbiH, 2-polyprenyl-6-methoxyphenol hydrox	8e-20
pfam01494	349	pfam01494, FAD_binding_3, FAD binding domain	2e-11
TIGR01988	387	TIGR01988, Ubi-OHases, Ubiquinone biosynthesis hyd	5e-09
TIGR01984	382	TIGR01984, UbiH, 2-polyprenyl-6-methoxyphenol 4-hy	9e-09
PRK08020	391	PRK08020, ubiF, 2-octaprenyl-3-methyl-6-methoxy-1,	8e-08
PRK06847	375	PRK06847, PRK06847, hypothetical protein; Provisio	5e-06
PRK07608	388	PRK07608, PRK07608, ubiquinone biosynthesis hydrox	1e-05
PRK05732	395	PRK05732, PRK05732, 2-octaprenyl-6-methoxyphenyl h	3e-05
pfam01266	234	pfam01266, DAO, FAD dependent oxidoreductase	6e-05
PRK07538	413	PRK07538, PRK07538, hypothetical protein; Provisio	6e-05
PRK06183	500	PRK06183, mhpA, 3-(3-hydroxyphenyl)propionate hydr	7e-05
PRK06753	373	PRK06753, PRK06753, hypothetical protein; Provisio	2e-04
PRK07364	415	PRK07364, PRK07364, 2-octaprenyl-6-methoxyphenyl h	3e-04
pfam13450	66	pfam13450, NAD_binding_8, NAD(P)-binding Rossmann-	4e-04
COG1232	444	COG1232, HemY, Protoporphyrinogen oxidase [Coenzym	7e-04
PRK06184	502	PRK06184, PRK06184, hypothetical protein; Provisio	0.001
PRK06126	545	PRK06126, PRK06126, hypothetical protein; Provisio	0.001
PRK08849	384	PRK08849, PRK08849, 2-octaprenyl-3-methyl-6-methox	0.002
COG0446	415	COG0446, HcaD, Uncharacterized NAD(FAD)-dependent	0.003
COG0644	396	COG0644, FixC, Dehydrogenases (flavoproteins) [Ene	0.004

>gnl|CDD|223727 COG0654, UbiH, 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]

 Score = 89.4 bits (222), Expect = 8e-20
 Identities = 44/173 (25%), Positives = 67/173 (38%), Gaps = 29/173 (16%)

Query: 8   SVVIVGGGLVGSLSACMFAKNQYEVNLYEAR-EDIRNSGLSEGKSINLALSVRGREALRR 66
            V IVG G  G   A   A+   +V L E    ++   G        +ALS     AL R
Sbjct: 4   DVAIVGAGPAGLALALALARAGLDVTLLERAPRELLERGR------GIALSPNALRALER 57

Query: 67  IGLEDKLLAHGIPMRARMIHGQNGKLREIPYDP-----------VHNQV-------ELEQ 108
           +GL D+L A G+P    M+    G+   + +D            V               
Sbjct: 58  LGLWDRLEALGVPPLHVMVVDDGGRRL-LIFDAAELGRGALGYVVPRSDLLNALLEAARA 116

Query: 109 YPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAYSGVRK 161
            P+  + F  ++  ++ +   VT   + D       D  L++GADGA S VR+
Sbjct: 117 LPNVTLRFGAEVEAVEQDGDGVTVTLSFDGET---LDADLLVGADGANSAVRR 166

Length = 387

>gnl|CDD|216530 pfam01494, FAD_binding_3, FAD binding domain

 Score = 63.9 bits (156), Expect = 2e-11
 Identities = 50/173 (28%), Positives = 71/173 (41%), Gaps = 26/173 (15%)

Query: 9   VVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIG 68
           V+IVGGG  G + A + A+    V L E       S L     +N     R  E LR+ G
Sbjct: 4   VLIVGGGPAGLMLALLLARAGVRVVLVERHAT--TSVLPRAGGLN----QRTMELLRQAG 57

Query: 69  LEDKLLAHGIPMRARMIHGQNGKLREIPYDP--------VHNQVELEQYPD--------- 111
           LED++LA G P     +   N   R    D         V+ Q ELE  P          
Sbjct: 58  LEDRILAEGAPHEGMGLAFYNTSRRRADLDFLTSPPRVTVYPQTELE--PILREHAEARG 115

Query: 112 CNIYFQHKLINLDVNSGNVT-FYRTEDNSETKITDNQLIIGADGAYSGVRKCL 163
             + F  ++++L+ +   VT   R   + E      + ++G DG  S VRK L
Sbjct: 116 AQVRFGTEVLSLEQDGDGVTAVVRDRRDGEEYTVRAKYLVGCDGGRSPVRKQL 168

This domain is involved in FAD binding in a number of enzymes. Length = 349

>gnl|CDD|233671 TIGR01988, Ubi-OHases, Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family

 Score = 56.8 bits (138), Expect = 5e-09
 Identities = 58/203 (28%), Positives = 79/203 (38%), Gaps = 58/203 (28%)

Query: 9   VVIVGGGLVGSLSACMFAKNQY-EVNLYEARE---------DIRNSGLSEGKSINLALSV 58
           +VIVGGG VG   A   A++   +V L EA           D R S LS   SI L    
Sbjct: 2   IVIVGGGPVGLALALALARSGGLKVALIEATPLPAPADPGFDNRVSALSAA-SIRL---- 56

Query: 59  RGREALRRIGLEDKLLAHGIPMRARMIH-------GQNGKLR----EIPYDPVHNQVELE 107
                L ++G+ DK+     P RA+ I        G  G L     EI  + +   VE  
Sbjct: 57  -----LEKLGVWDKIE----PARAQPIRDIHVSDGGSFGALHFDADEIGLEALGYVVE-- 105

Query: 108 QYPDCNIYFQHKLINLDVNSGN----------VTFYRTEDNSETKITDNQ-----LIIGA 152
                N   Q  L        N          V   R  D+ E  + D Q     L++GA
Sbjct: 106 -----NRVLQQALWERLQELPNRVTILCPARVVELPRHSDHVELTLDDGQQLRARLLVGA 160

Query: 153 DGAYSGVRKCL-MKQSMFNYSQT 174
           DGA S VR+   +  + ++Y Q+
Sbjct: 161 DGANSKVRQLAGIPTTGWDYGQS 183

This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4,) and UbiF (which acts at position 5,). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) making it difficult to ascribe a specific activity to each one. Eukaryotes appear to have only a single homolog in this subfamily (COQ6,) which complements UbiH, but also possess a non-orthologous gene, COQ7 which complements UbiF [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 387

>gnl|CDD|233669 TIGR01984, UbiH, 2-polyprenyl-6-methoxyphenol 4-hydroxylase

 Score = 56.2 bits (136), Expect = 9e-09
 Identities = 50/197 (25%), Positives = 72/197 (36%), Gaps = 45/197 (22%)

Query: 9   VVIVGGGLVGSLSACMFA-KNQYEVNLYEARE--------DIRNSGLSEGKSINLALSVR 59
           V+IVGGGLVG   A   +   + ++ L EA          D R+  LS G S  +     
Sbjct: 2   VIIVGGGLVGLSLALALSRLGKIKIALIEANSPSAAQPGFDARSLALSYG-SKQI----- 55

Query: 60  GREALRRIGLEDKLLAHGIPMRARMIH----GQNGKLR---EIPYDPVHNQV-------- 104
               L ++GL  KL     P+    IH    G  G           P    V        
Sbjct: 56  ----LEKLGLWPKLAPFATPILD--IHVSDQGHFGATHLRASEFGLPALGYVVELADLGQ 109

Query: 105 ----ELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAYSGVR 160
                L    +  +Y   +   +  N   V    T DN +      +L+I ADGA S VR
Sbjct: 110 ALLSRLALLTNIQLYCPARYKEIIRNQDYVRV--TLDNGQQLRA--KLLIAADGANSKVR 165

Query: 161 K-CLMKQSMFNYSQTYI 176
           +   +     +Y+QT +
Sbjct: 166 ELLSIPTEEHDYNQTAL 182

This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 382

>gnl|CDD|181199 PRK08020, ubiF, 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed

 Score = 53.4 bits (129), Expect = 8e-08
 Identities = 49/185 (26%), Positives = 77/185 (41%), Gaps = 51/185 (27%)

Query: 9   VVIVGGGLVGSLSACMFAKNQYEVNLYE----------AREDIRNSGLSEGKSINLALSV 58
           + IVGGG+VG+  A   A++ + V + E          ++ D+R S +S       A SV
Sbjct: 8   IAIVGGGMVGAALALGLAQHGFSVAVLEHAAPAPFDADSQPDVRISAIS-------AASV 60

Query: 59  RGREALRRIGLEDKLLAHGIPMR--------------ARMI-HGQNGKLREIPYDPVHNQ 103
                L+ +G+ D + A    MR              A ++      KL E+ Y  V N+
Sbjct: 61  A---LLKGLGVWDAVQA----MRSHPYRRLETWEWETAHVVFDAAELKLPELGY-MVENR 112

Query: 104 V-------ELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAY 156
           V        LE +P+  +     L  L     +  +  T  + E      +L+IGADGA 
Sbjct: 113 VLQLALWQALEAHPNVTLRCPASLQAL--QRDDDGWELTLADGEEIQA--KLVIGADGAN 168

Query: 157 SGVRK 161
           S VR+
Sbjct: 169 SQVRQ 173

Length = 391

>gnl|CDD|235874 PRK06847, PRK06847, hypothetical protein; Provisional

 Score = 47.9 bits (115), Expect = 5e-06
 Identities = 45/176 (25%), Positives = 70/176 (39%), Gaps = 30/176 (17%)

Query: 5   SKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINL-ALSVRGREA 63
           + K V+IVGGG+ G  +A    +    V+L E   + R      G  I L   ++R   A
Sbjct: 3   AVKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPEWR----VYGAGITLQGNALR---A 55

Query: 64  LRRIGLEDKLLAHGIPMRARMIHGQNG-KLREIPYDPVHNQVELEQYPDCN-IY---FQH 118
           LR +G+ D+ L  G       +   +G  L E+P  P   ++  +  P    I       
Sbjct: 56  LRELGVLDECLEAGFGFDGVDLFDPDGTLLAELP-TP---RLAGDDLPGGGGIMRPALAR 111

Query: 119 KLINLDVNSG-----NVTFYRTEDNSE---TKITDNQ-----LIIGADGAYSGVRK 161
            L +    +G       T    E + +      +D       L++GADG YS VR 
Sbjct: 112 ILADAARAAGADVRLGTTVTAIEQDDDGVTVTFSDGTTGRYDLVVGADGLYSKVRS 167

Length = 375

>gnl|CDD|181057 PRK07608, PRK07608, ubiquinone biosynthesis hydroxylase family protein; Provisional

 Score = 46.5 bits (111), Expect = 1e-05
 Identities = 49/181 (27%), Positives = 75/181 (41%), Gaps = 18/181 (9%)

Query: 9   VVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIG 68
           VV+VGGGLVG+  A   A++   V L   R   R +  +    +  A+S   +  L R+G
Sbjct: 8   VVVVGGGLVGASLALALAQSGLRVALLAPRAPPRPADDAWDSRV-YAISPSSQAFLERLG 66

Query: 69  LEDKLLAHGI-PMRARMIHGQ-NGKLREIPYDPVHNQ----VE---LEQYPDCNIYFQHK 119
           +   L A  + P+    + G  + +L    Y     Q    VE   +E+     + FQ  
Sbjct: 67  VWQALDAARLAPVYDMRVFGDAHARLHFSAYQAGVPQLAWIVESSLIERALWAALRFQPN 126

Query: 120 LINLDVNSGNVTFYRTEDNSETKITDNQ-----LIIGADGAYSGVRK-CLMKQSMFNYSQ 173
           L      +         D +   + D Q     L++GADGA+S VR    +K     Y Q
Sbjct: 127 LTWFPARA--QGLEVDPDAATLTLADGQVLRADLVVGADGAHSWVRSQAGIKAERRPYRQ 184

Query: 174 T 174
           T
Sbjct: 185 T 185

Length = 388

>gnl|CDD|235584 PRK05732, PRK05732, 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

 Score = 45.6 bits (109), Expect = 3e-05
 Identities = 44/204 (21%), Positives = 68/204 (33%), Gaps = 58/204 (28%)

Query: 8   SVVIVGGGLVGS-----LSACMFAKNQYEVNLYEARE---------DIRNSGLSEGKSIN 53
            V+IVGGG+ G+     LS    +     V L EA           D R   L+ G    
Sbjct: 5   DVIIVGGGMAGATLALALSR--LSHGGLPVALIEAFAPESDAHPGFDARAIALAAGT--- 59

Query: 54  LALSVRGREALRRIGLEDKLLAHGIPMRARMIH----GQNGKLR----EIPYDPVHNQVE 105
                   + L R+G+   L     P+    IH    G  G +R    +     +   VE
Sbjct: 60  -------CQQLARLGVWQALADCATPITH--IHVSDRGHAGFVRLDAEDYGVPALGYVVE 110

Query: 106 LEQYPDCNIYFQHKLINLDVNSGNVTFY---------RTEDNSETKITDNQ-----LIIG 151
           L             L         VT +         RT+ +    + D +     L++ 
Sbjct: 111 LHDVGQR---LFALLDKAP----GVTLHCPARVANVERTQGSVRVTLDDGETLTGRLLVA 163

Query: 152 ADGAYSGVRK-CLMKQSMFNYSQT 174
           ADG++S +R+   +      Y Q 
Sbjct: 164 ADGSHSALREALGIDWQQHPYEQV 187

Length = 395

>gnl|CDD|216400 pfam01266, DAO, FAD dependent oxidoreductase

 Score = 43.4 bits (103), Expect = 6e-05
 Identities = 27/97 (27%), Positives = 41/97 (42%), Gaps = 22/97 (22%)

Query: 9  VVIVGGGLVGSLSACMFAKNQYEVNLYEAREDI------RNSGL------SEGKSINLAL 56
          VV++GGG+VG  +A   A+    V L E R D+      RN+GL       E   +   L
Sbjct: 2  VVVIGGGIVGLSTAYELARRGLSVTLLE-RGDLASGASGRNAGLLHPGLRKERAPLLARL 60

Query: 57 SVRGREALRRIGLEDKLLAHGIPMRARMIHGQNGKLR 93
          ++  R+  R +     +   GI    R    + G L 
Sbjct: 61 ALESRDLWREL-----IEELGIDCDFR----RTGVLV 88

This family includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase EC:1.1.99.5, Sarcosine oxidase beta subunit EC:1.5.3.1, D-alanine oxidase EC:1.4.99.1, D-aspartate oxidase EC:1.4.3.1. Length = 234

>gnl|CDD|236046 PRK07538, PRK07538, hypothetical protein; Provisional

 Score = 44.5 bits (106), Expect = 6e-05
 Identities = 45/181 (24%), Positives = 75/181 (41%), Gaps = 38/181 (20%)

Query: 9   VVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINL---ALSVRGREALR 65
           V+I GGG+ G   A    +   EV ++EA  ++R  G+     INL   A+    RE L 
Sbjct: 3   VLIAGGGIGGLTLALTLHQRGIEVVVFEAAPELRPLGV----GINLLPHAV----RE-LA 53

Query: 66  RIGLEDKLLAHGIPMRARMIHGQNGKLREIPYDP--VHNQVELEQY-------------- 109
            +GL D L A GI  R      ++G+   I  +P  +    +  QY              
Sbjct: 54  ELGLLDALDAIGIRTRELAYFNRHGQ--RIWSEPRGLAAGYDWPQYSIHRGELQMLLLDA 111

Query: 110 ------PDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKIT-DNQLIIGADGAYSGVRKC 162
                 PD  +   H+++  + ++     +  +      ++    ++IGADG +S VR  
Sbjct: 112 VRERLGPDA-VRTGHRVVGFEQDADVTVVFLGDRAGGDLVSVRGDVLIGADGIHSAVRAQ 170

Query: 163 L 163
           L
Sbjct: 171 L 171

Length = 413

>gnl|CDD|235727 PRK06183, mhpA, 3-(3-hydroxyphenyl)propionate hydroxylase; Validated

 Score = 44.5 bits (106), Expect = 7e-05
 Identities = 45/178 (25%), Positives = 68/178 (38%), Gaps = 37/178 (20%)

Query: 9   VVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINL--ALSVRGREALR- 65
           VVIVG G VG   A +  +    V + E    +           +L  A+ +   EALR 
Sbjct: 13  VVIVGAGPVGLTLANLLGQYGVRVLVLERWPTL----------YDLPRAVGIDD-EALRV 61

Query: 66  --RIGLEDKLLAHGIPMRA-RMIHGQNGKLREIPYDPVH----------NQVELE----- 107
              IGL D++L H  P    R +  +   L EI                +Q  LE     
Sbjct: 62  LQAIGLADEVLPHTTPNHGMRFLDAKGRCLAEIARPSTGEFGWPRRNAFHQPLLEAVLRA 121

Query: 108 ---QYPDCNIYFQHKLINLDVNSGNVTF-YRTEDNSETKITDNQLIIGADGAYSGVRK 161
              ++P   + F H++  L  +   VT      D     +   + ++G DGA S VR+
Sbjct: 122 GLARFPHVRVRFGHEVTALTQDDDGVTVTLTDADGQRETVR-ARYVVGCDGANSFVRR 178

Length = 500

>gnl|CDD|168661 PRK06753, PRK06753, hypothetical protein; Provisional

 Score = 43.1 bits (102), Expect = 2e-04
 Identities = 33/170 (19%), Positives = 67/170 (39%), Gaps = 13/170 (7%)

Query: 9   VVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINL--ALSVRG-REALR 65
           + I+G G+ G  +A +  +  +EV ++E  E ++  G   G   N+   L      + ++
Sbjct: 3   IAIIGAGIGGLTAAALLQEQGHEVKVFEKNESVKEVGAGIGIGDNVIKKLGNHDLAKGIK 62

Query: 66  RIGLE----DKLLAHGIPMRARMIHGQNGKLREIPYDPVHNQVELEQYPDCNIYFQHKLI 121
             G      + L   G  +  ++    N     +    +   +      +  I+   ++ 
Sbjct: 63  NAGQILSTMNLLDDKGTLL-NKVKLKSNTLNVTLHRQTLI-DIIKSYVKEDAIFTGKEVT 120

Query: 122 NLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAYSGVRKCLMKQSMFNY 171
            ++  +  VT +  +  SE       L IGADG +S VR+ +   S   Y
Sbjct: 121 KIENETDKVTIHFADGESE----AFDLCIGADGIHSKVRQSVNADSKVRY 166

Length = 373

>gnl|CDD|236001 PRK07364, PRK07364, 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

 Score = 41.9 bits (99), Expect = 3e-04
 Identities = 36/169 (21%), Positives = 68/169 (40%), Gaps = 22/169 (13%)

Query: 9   VVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIG 68
           V IVGGG+VG   A     +   + L EA+     +  ++G++   ALS+        IG
Sbjct: 21  VAIVGGGIVGLTLAAALKDSGLRIALIEAQ--PAEAAAAKGQA--YALSLLSARIFEGIG 76

Query: 69  LEDKLLAHGIPMRA---------RMIHGQNGKLRE--IPYDPVHN------QVELEQYPD 111
           + +K+L      R           ++  Q   L    + Y   H       Q  L+  P+
Sbjct: 77  VWEKILPQIGKFRQIRLSDADYPGVVKFQPTDLGTEALGYVGEHQVLLEALQEFLQSCPN 136

Query: 112 CNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAYSGVR 160
                  ++++++      T     +  +  +  ++L++ ADGA S +R
Sbjct: 137 ITWLCPAEVVSVEYQQDAATVTLEIEGKQQTL-QSKLVVAADGARSPIR 184

Length = 415

>gnl|CDD|205628 pfam13450, NAD_binding_8, NAD(P)-binding Rossmann-like domain

 Score = 38.2 bits (90), Expect = 4e-04
 Identities = 13/31 (41%), Positives = 19/31 (61%)

Query: 11 IVGGGLVGSLSACMFAKNQYEVNLYEAREDI 41
          IVG GL G ++A + AK   +V + E R+ I
Sbjct: 1  IVGAGLSGLVAAYLLAKRGKDVLVLEKRDRI 31

Length = 66

>gnl|CDD|224153 COG1232, HemY, Protoporphyrinogen oxidase [Coenzyme metabolism]

 Score = 41.2 bits (97), Expect = 7e-04
 Identities = 33/104 (31%), Positives = 43/104 (41%), Gaps = 20/104 (19%)

Query: 7  KSVVIVGGGLVGSLSACMFAK---NQYEVNLYEAREDIRNSGLSE-----GKSINL---A 55
            + I+GGG+ G LSA    +      EV L+EA + +   GL       G         
Sbjct: 1  MKIAIIGGGIAG-LSAAYRLQKAGPDVEVTLFEADDRV--GGLLRTVKIDGFLFERGPHH 57

Query: 56 LSVRGREALRRI---GLEDKLLAHGIPMRARMIHGQNGKLREIP 96
             R  E L  I   GLEDKLL      R  + +  +GKL  IP
Sbjct: 58 FLARKEEILDLIKELGLEDKLL-WNSTARKYIYY--DGKLHPIP 98

Length = 444

>gnl|CDD|235728 PRK06184, PRK06184, hypothetical protein; Provisional

 Score = 40.7 bits (96), Expect = 0.001
 Identities = 46/182 (25%), Positives = 67/182 (36%), Gaps = 40/182 (21%)

Query: 9   VVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIG 68
           V+IVG G  G   A   A+      L E   +      S GK I      R +E    +G
Sbjct: 6   VLIVGAGPTGLTLAIELARRGVSFRLIEKAPEPFPG--SRGKGIQ----PRTQEVFDDLG 59

Query: 69  LEDKLLAHG---IPMRARMIHGQNGKLRE------------IPYD-----PVHNQVELEQ 108
           + D+++A G    PMR   I+  +G + E             PY      P   Q   E+
Sbjct: 60  VLDRVVAAGGLYPPMR---IYRDDGSVAESDMFAHLEPTPDEPYPLPLMVP---QWRTER 113

Query: 109 YP-------DCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAYSGVRK 161
                       + F  +L+  + ++  VT        E  +    L +GADG  S VRK
Sbjct: 114 ILRERLAELGHRVEFGCELVGFEQDADGVTARVAGPAGEETVRARYL-VGADGGRSFVRK 172

Query: 162 CL 163
            L
Sbjct: 173 AL 174

Length = 502

>gnl|CDD|235704 PRK06126, PRK06126, hypothetical protein; Provisional

 Score = 40.7 bits (96), Expect = 0.001
 Identities = 41/196 (20%), Positives = 69/196 (35%), Gaps = 44/196 (22%)

Query: 5   SKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEARE-DIRNSGLSEGKSINLALSVRGREA 63
           S+  V+IVGGG VG   A    +   +  L E ++    N   +         S R  E 
Sbjct: 6   SETPVLIVGGGPVGLALALDLGRRGVDSILVERKDGTAFNPKAN-------TTSARSMEH 58

Query: 64  LRRIGLEDKLLAHGIP-------------------------MRARMIHGQNGKLREIPYD 98
            RR+G+ D++ + G+P                          R  +             +
Sbjct: 59  FRRLGIADEVRSAGLPVDYPTDIAYFTRLTGYELARFRLPSAREAITPVGGPDGSWPSPE 118

Query: 99  PVH--NQVELE--------QYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKIT-DNQ 147
             H   Q  LE          P   + + H+L + + ++  VT    + +    +T    
Sbjct: 119 LPHRIPQKYLEPILLEHAAAQPGVTLRYGHRLTDFEQDADGVTATVEDLDGGESLTIRAD 178

Query: 148 LIIGADGAYSGVRKCL 163
            ++G DGA S VR+ L
Sbjct: 179 YLVGCDGARSAVRRSL 194

Length = 545

>gnl|CDD|181564 PRK08849, PRK08849, 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

 Score = 39.8 bits (93), Expect = 0.002
 Identities = 53/178 (29%), Positives = 84/178 (47%), Gaps = 31/178 (17%)

Query: 6   KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEARE----------DIRNSGLSEGKSINLA 55
           K  + +VGGG+VG+ +A  FAK    V + E  E          DIR S +S+  S++L 
Sbjct: 3   KYDIAVVGGGMVGAATALGFAKQGRSVAVIEGGEPKAFEPSQPMDIRVSAISQ-TSVDLL 61

Query: 56  LSVRGREALR--RIGLEDKLLAHGIP-MRARMIHGQNGKLREIPYDPVHNQV-------E 105
            S+    ++   R+    +L     P  R R  H     L ++ Y  V N++       +
Sbjct: 62  ESLGAWSSIVAMRVCPYKRLETWEHPECRTRF-HSDELNLDQLGY-IVENRLIQLGLWQQ 119

Query: 106 LEQYPDCNIYFQHKLINLDVNS-GN-VTFYRTEDNSETKITDNQLIIGADGAYSGVRK 161
             QYP+  +    KL +L+ ++ GN VT    E  +E +    + +IGADGA S VR+
Sbjct: 120 FAQYPNLTLMCPEKLADLEFSAEGNRVTL---ESGAEIEA---KWVIGADGANSQVRQ 171

Length = 384

>gnl|CDD|223523 COG0446, HcaD, Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]

 Score = 39.1 bits (91), Expect = 0.003
 Identities = 28/101 (27%), Positives = 38/101 (37%), Gaps = 9/101 (8%)

Query: 6   KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLA--LSVRGREA 63
            K VV+VG G +G  +A   AK   +V L EA + +    L    +  LA  L   G E 
Sbjct: 136 PKDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQLLDPEVAEELAELLEKYGVEL 195

Query: 64  LRRIGLE--DKLLAHGIPMRARMIHGQNGKLREIPYDPVHN 102
           L    +   +      +  R   I G      EI  D V  
Sbjct: 196 LLGTKVVGVEGKGNTLVVERVVGIDG-----EEIKADLVII 231

Length = 415

>gnl|CDD|223717 COG0644, FixC, Dehydrogenases (flavoproteins) [Energy production and conversion]

 Score = 38.6 bits (90), Expect = 0.004
 Identities = 38/186 (20%), Positives = 65/186 (34%), Gaps = 32/186 (17%)

Query: 9   VVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIG 68
           VVIVG G  GS +A   AK   +V + E   +        G      LS R   AL  + 
Sbjct: 6   VVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKPCCGG-----GLSPR---ALEELI 57

Query: 69  LE-DKLLAHGIPMRARMIHGQNGKLREIPYDPVHNQVELEQYPD-----------CNIYF 116
            + D+ +   +   AR+         E+P    +  V+  ++ D             +Y 
Sbjct: 58  PDFDEEIERKVT-GARIYFPGEKVAIEVPVGEGYI-VDRAKF-DKWLAERAEEAGAELYP 114

Query: 117 QHKLINLDVNSGNV--TFYRTEDNSETKITDNQLIIGADGAYSGVRKCL--MKQSMFNYS 172
             ++  +      V       +D    K+     +I ADG  S + + L    +   +Y+
Sbjct: 115 GTRVTGVIREDDGVVVGVRAGDDEVRAKV-----VIDADGVNSALARKLGLKDRKPEDYA 169

Query: 173 QTYIEH 178
               E 
Sbjct: 170 IGVKEV 175

Length = 396

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	379
PRK06617	374	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	100.0
COG0654	387	UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and	100.0
PRK08849	384	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	100.0
PRK08850	405	2-octaprenyl-6-methoxyphenol hydroxylase; Validate	100.0
PRK08013	400	oxidoreductase; Provisional	100.0
PRK08773	392	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	100.0
PRK07494	388	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	100.0
TIGR01989	437	COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. T	100.0
PRK05714	405	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	100.0
PRK07364	415	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	100.0
PRK06185	407	hypothetical protein; Provisional	100.0
PRK08020	391	ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquin	100.0
PRK06183	538	mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Va	100.0
KOG2614|consensus	420		100.0
PRK07588	391	hypothetical protein; Provisional	99.98
PRK06834	488	hypothetical protein; Provisional	99.98
PRK07333	403	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	99.98
PRK05868	372	hypothetical protein; Validated	99.97
PRK06184	502	hypothetical protein; Provisional	99.97
PRK06475	400	salicylate hydroxylase; Provisional	99.97
PRK07190	487	hypothetical protein; Provisional	99.97
PRK06753	373	hypothetical protein; Provisional	99.97
PRK08294	634	phenol 2-monooxygenase; Provisional	99.97
PRK07045	388	putative monooxygenase; Reviewed	99.97
PRK06126	545	hypothetical protein; Provisional	99.97
PRK06996	398	hypothetical protein; Provisional	99.97
PRK07236	386	hypothetical protein; Provisional	99.97
PRK08244	493	hypothetical protein; Provisional	99.97
PRK08243	392	4-hydroxybenzoate 3-monooxygenase; Validated	99.97
PRK09126	392	hypothetical protein; Provisional	99.97
TIGR01984	382	UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. T	99.97
PTZ00367	567	squalene epoxidase; Provisional	99.97
PRK08132	547	FAD-dependent oxidoreductase; Provisional	99.97
TIGR01988	385	Ubi-OHases Ubiquinone biosynthesis hydroxylase, Ub	99.97
TIGR02360	390	pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase.	99.97
PRK05732	395	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	99.97
PRK08163	396	salicylate hydroxylase; Provisional	99.97
PRK06847	375	hypothetical protein; Provisional	99.97
PRK07538	413	hypothetical protein; Provisional	99.96
PLN02985	514	squalene monooxygenase	99.96
PF01494	356	FAD_binding_3: FAD binding domain; InterPro: IPR00	99.96
PRK07608	388	ubiquinone biosynthesis hydroxylase family protein	99.96
TIGR03219	414	salicylate_mono salicylate 1-monooxygenase. Member	99.95
PLN02927	668	antheraxanthin epoxidase/zeaxanthin epoxidase	99.94
KOG3855|consensus	481		99.93
PRK11445	351	putative oxidoreductase; Provisional	99.91
TIGR02032	295	GG-red-SF geranylgeranyl reductase family. This mo	99.91
TIGR02023	388	BchP-ChlP geranylgeranyl reductase. This model rep	99.88
PLN00093	450	geranylgeranyl diphosphate reductase; Provisional	99.85
KOG1298|consensus	509		99.85
PRK08255	765	salicylyl-CoA 5-hydroxylase; Reviewed	99.85
COG0644	396	FixC Dehydrogenases (flavoproteins) [Energy produc	99.82
PRK10015	429	oxidoreductase; Provisional	99.81
TIGR02028	398	ChlP geranylgeranyl reductase. This model represen	99.81
PRK10157	428	putative oxidoreductase FixC; Provisional	99.8
TIGR01790	388	carotene-cycl lycopene cyclase family protein. Thi	99.74
PLN02463	447	lycopene beta cyclase	99.69
TIGR01789	370	lycopene_cycl lycopene cyclase. This model represe	99.66
PLN02697	529	lycopene epsilon cyclase	99.65
PF04820	454	Trp_halogenase: Tryptophan halogenase; InterPro: I	99.62
PF05834	374	Lycopene_cycl: Lycopene cyclase protein; InterPro:	99.56
COG2081	408	Predicted flavoproteins [General function predicti	99.43
PRK04176	257	ribulose-1,5-biphosphate synthetase; Provisional	99.4
TIGR00292	254	thiazole biosynthesis enzyme. This enzyme is invol	99.39
PRK13369	502	glycerol-3-phosphate dehydrogenase; Provisional	99.29
PRK12266	508	glpD glycerol-3-phosphate dehydrogenase; Reviewed	99.27
PF01266	358	DAO: FAD dependent oxidoreductase; InterPro: IPR00	99.26
PF03486	409	HI0933_like: HI0933-like protein; InterPro: IPR004	99.25
PRK11259	376	solA N-methyltryptophan oxidase; Provisional	99.25
TIGR01377	380	soxA_mon sarcosine oxidase, monomeric form. Sarcos	99.23
COG1635	262	THI4 Ribulose 1,5-bisphosphate synthetase, convert	99.2
PRK05192	618	tRNA uridine 5-carboxymethylaminomethyl modificati	99.2
COG0579	429	Predicted dehydrogenase [General function predicti	99.19
PRK11101	546	glpA sn-glycerol-3-phosphate dehydrogenase subunit	99.18
COG0578	532	GlpA Glycerol-3-phosphate dehydrogenase [Energy pr	99.18
PF01946	230	Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.	99.17
PF12831	428	FAD_oxidored: FAD dependent oxidoreductase; PDB: 3	99.15
PF13738	203	Pyr_redox_3: Pyridine nucleotide-disulphide oxidor	99.14
PRK11728	393	hydroxyglutarate oxidase; Provisional	99.13
PRK12409	410	D-amino acid dehydrogenase small subunit; Provisio	99.12
PRK01747	662	mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans	99.1
PRK05257	494	malate:quinone oxidoreductase; Validated	99.09
PRK13339	497	malate:quinone oxidoreductase; Reviewed	99.06
PRK06481	506	fumarate reductase flavoprotein subunit; Validated	99.05
PRK09231	582	fumarate reductase flavoprotein subunit; Validated	99.04
PRK06069	577	sdhA succinate dehydrogenase flavoprotein subunit;	99.04
TIGR01320	483	mal_quin_oxido malate:quinone-oxidoreductase. This	99.03
PTZ00383	497	malate:quinone oxidoreductase; Provisional	99.03
TIGR00551	488	nadB L-aspartate oxidase. L-aspartate oxidase is t	99.03
PRK05945	575	sdhA succinate dehydrogenase flavoprotein subunit;	99.01
PRK05249	461	soluble pyridine nucleotide transhydrogenase; Prov	99.01
PLN02172	461	flavin-containing monooxygenase FMO GS-OX	99.01
TIGR01812	566	sdhA_frdA_Gneg succinate dehydrogenase or fumarate	99.0
TIGR01813	439	flavo_cyto_c flavocytochrome c. This model describ	99.0
TIGR01176	580	fum_red_Fp fumarate reductase, flavoprotein subuni	98.99
TIGR03329	460	Phn_aa_oxid putative aminophosphonate oxidoreducta	98.99
TIGR03364	365	HpnW_proposed FAD dependent oxidoreductase TIGR033	98.98
PRK06175	433	L-aspartate oxidase; Provisional	98.97
TIGR01373	407	soxB sarcosine oxidase, beta subunit family, heter	98.96
PRK08274	466	tricarballylate dehydrogenase; Validated	98.96
PRK00711	416	D-amino acid dehydrogenase small subunit; Validate	98.96
PLN02661	357	Putative thiazole synthesis	98.95
PRK06452	566	sdhA succinate dehydrogenase flavoprotein subunit;	98.94
PLN02464	627	glycerol-3-phosphate dehydrogenase	98.93
COG2072	443	TrkA Predicted flavoprotein involved in K+ transpo	98.93
PRK07804	541	L-aspartate oxidase; Provisional	98.93
PF00890	417	FAD_binding_2: FAD binding domain of the Pfam fami	98.93
PRK09078	598	sdhA succinate dehydrogenase flavoprotein subunit;	98.92
COG1233	487	Phytoene dehydrogenase and related proteins [Secon	98.91
PRK08071	510	L-aspartate oxidase; Provisional	98.91
TIGR01292	300	TRX_reduct thioredoxin-disulfide reductase. This m	98.91
PRK08641	589	sdhA succinate dehydrogenase flavoprotein subunit;	98.89
COG3380	331	Predicted NAD/FAD-dependent oxidoreductase [Genera	98.89
PTZ00139	617	Succinate dehydrogenase [ubiquinone] flavoprotein	98.89
PRK08958	588	sdhA succinate dehydrogenase flavoprotein subunit;	98.89
PRK07803	626	sdhA succinate dehydrogenase flavoprotein subunit;	98.89
PF08491	276	SE: Squalene epoxidase; InterPro: IPR013698 This d	98.88
PF01134	392	GIDA: Glucose inhibited division protein A; InterP	98.88
COG0492	305	TrxB Thioredoxin reductase [Posttranslational modi	98.87
PRK09077	536	L-aspartate oxidase; Provisional	98.87
PRK07573	640	sdhA succinate dehydrogenase flavoprotein subunit;	98.86
TIGR00275	400	flavoprotein, HI0933 family. The model when search	98.86
PRK06263	543	sdhA succinate dehydrogenase flavoprotein subunit;	98.85
PRK06854	608	adenylylsulfate reductase subunit alpha; Validated	98.85
PRK08401	466	L-aspartate oxidase; Provisional	98.84
PRK12834	549	putative FAD-binding dehydrogenase; Reviewed	98.84
PLN00128	635	Succinate dehydrogenase [ubiquinone] flavoprotein	98.83
PRK07121	492	hypothetical protein; Validated	98.83
PRK07057	591	sdhA succinate dehydrogenase flavoprotein subunit;	98.83
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	98.82
PRK07395	553	L-aspartate oxidase; Provisional	98.81
PRK08626	657	fumarate reductase flavoprotein subunit; Provision	98.8
PRK06115	466	dihydrolipoamide dehydrogenase; Reviewed	98.8
PRK07512	513	L-aspartate oxidase; Provisional	98.8
PLN02815	594	L-aspartate oxidase	98.8
COG1232	444	HemY Protoporphyrinogen oxidase [Coenzyme metaboli	98.8
PRK08010	441	pyridine nucleotide-disulfide oxidoreductase; Prov	98.79
PRK06370	463	mercuric reductase; Validated	98.79
PRK08205	583	sdhA succinate dehydrogenase flavoprotein subunit;	98.79
KOG1399|consensus	448		98.78
PRK14694	468	putative mercuric reductase; Provisional	98.77
COG0665	387	DadA Glycine/D-amino acid oxidases (deaminating) [	98.77
PRK07843	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	98.77
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	98.76
KOG2820|consensus	399		98.76
PRK07251	438	pyridine nucleotide-disulfide oxidoreductase; Prov	98.75
PRK06116	450	glutathione reductase; Validated	98.75
PRK07818	466	dihydrolipoamide dehydrogenase; Reviewed	98.75
TIGR01424	446	gluta_reduc_2 glutathione-disulfide reductase, pla	98.75
TIGR02730	493	carot_isom carotene isomerase. Members of this fam	98.74
PRK06467	471	dihydrolipoamide dehydrogenase; Reviewed	98.73
PRK08275	554	putative oxidoreductase; Provisional	98.73
TIGR00136	617	gidA glucose-inhibited division protein A. GidA, t	98.71
TIGR01350	461	lipoamide_DH dihydrolipoamide dehydrogenase. The m	98.7
PRK12837	513	3-ketosteroid-delta-1-dehydrogenase; Provisional	98.7
PRK05976	472	dihydrolipoamide dehydrogenase; Validated	98.7
PRK11883	451	protoporphyrinogen oxidase; Reviewed	98.69
PRK10262	321	thioredoxin reductase; Provisional	98.68
PRK06416	462	dihydrolipoamide dehydrogenase; Reviewed	98.68
KOG2853|consensus	509		98.68
COG1231	450	Monoamine oxidase [Amino acid transport and metabo	98.68
PF00743	531	FMO-like: Flavin-binding monooxygenase-like; Inter	98.67
PLN02507	499	glutathione reductase	98.67
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	98.66
TIGR00562	462	proto_IX_ox protoporphyrinogen oxidase. This prote	98.66
PTZ00363	443	rab-GDP dissociation inhibitor; Provisional	98.66
PRK09897	534	hypothetical protein; Provisional	98.66
TIGR01811	603	sdhA_Bsu succinate dehydrogenase or fumarate reduc	98.66
TIGR02734	502	crtI_fam phytoene desaturase. Phytoene is converte	98.66
COG0029	518	NadB Aspartate oxidase [Coenzyme metabolism]	98.65
TIGR01421	450	gluta_reduc_1 glutathione-disulfide reductase, ani	98.64
PRK07233	434	hypothetical protein; Provisional	98.63
PRK12842	574	putative succinate dehydrogenase; Reviewed	98.63
PRK12416	463	protoporphyrinogen oxidase; Provisional	98.61
PRK12844	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	98.6
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	98.59
PRK12835	584	3-ketosteroid-delta-1-dehydrogenase; Reviewed	98.58
TIGR02053	463	MerA mercuric reductase. This model represents the	98.58
KOG2415|consensus	621		98.57
PF06039	488	Mqo: Malate:quinone oxidoreductase (Mqo); InterPro	98.57
PRK13977	576	myosin-cross-reactive antigen; Provisional	98.56
TIGR02731	453	phytoene_desat phytoene desaturase. Plants and cya	98.56
PLN02612	567	phytoene desaturase	98.55
PTZ00306	1167	NADH-dependent fumarate reductase; Provisional	98.55
PRK06327	475	dihydrolipoamide dehydrogenase; Validated	98.53
PLN02568	539	polyamine oxidase	98.52
PF13454	156	NAD_binding_9: FAD-NAD(P)-binding	98.52
PF07992	201	Pyr_redox_2: Pyridine nucleotide-disulphide oxidor	98.52
PRK13748	561	putative mercuric reductase; Provisional	98.51
PRK06134	581	putative FAD-binding dehydrogenase; Reviewed	98.51
KOG0029|consensus	501		98.51
KOG0042|consensus	680		98.5
PF13450	68	NAD_binding_8: NAD(P)-binding Rossmann-like domain	98.5
TIGR02061	614	aprA adenosine phosphosulphate reductase, alpha su	98.49
TIGR02732	474	zeta_caro_desat carotene 7,8-desaturase. Carotene	98.48
PRK05335	436	tRNA (uracil-5-)-methyltransferase Gid; Reviewed	98.48
PRK12845	564	3-ketosteroid-delta-1-dehydrogenase; Reviewed	98.48
PRK14727	479	putative mercuric reductase; Provisional	98.48
PRK13512	438	coenzyme A disulfide reductase; Provisional	98.45
PLN02487	569	zeta-carotene desaturase	98.45
KOG1335|consensus	506		98.44
PRK09754	396	phenylpropionate dioxygenase ferredoxin reductase	98.44
PTZ00058	561	glutathione reductase; Provisional	98.43
PRK12843	578	putative FAD-binding dehydrogenase; Reviewed	98.43
PRK07845	466	flavoprotein disulfide reductase; Reviewed	98.42
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	98.42
TIGR02485	432	CobZ_N-term precorrin 3B synthase CobZ. CobZ is es	98.41
COG1249	454	Lpd Pyruvate/2-oxoglutarate dehydrogenase complex,	98.38
COG1053	562	SdhA Succinate dehydrogenase/fumarate reductase, f	98.34
PRK12839	572	hypothetical protein; Provisional	98.32
PRK09564	444	coenzyme A disulfide reductase; Reviewed	98.31
PRK04965	377	NADH:flavorubredoxin oxidoreductase; Provisional	98.31
TIGR03378	419	glycerol3P_GlpB glycerol-3-phosphate dehydrogenase	98.3
TIGR02462	544	pyranose_ox pyranose oxidase. Pyranose oxidase (al	98.25
PRK09754	396	phenylpropionate dioxygenase ferredoxin reductase	98.24
TIGR01372	985	soxA sarcosine oxidase, alpha subunit family, hete	98.24
TIGR01423	486	trypano_reduc trypanothione-disulfide reductase. T	98.23
TIGR01438	484	TGR thioredoxin and glutathione reductase selenopr	98.22
COG2907	447	Predicted NAD/FAD-binding protein [General functio	98.19
PLN02546	558	glutathione reductase	98.18
PRK06912	458	acoL dihydrolipoamide dehydrogenase; Validated	98.16
PRK07208	479	hypothetical protein; Provisional	98.16
PRK12814	652	putative NADPH-dependent glutamate synthase small	98.13
PRK06292	460	dihydrolipoamide dehydrogenase; Validated	98.1
KOG2844|consensus	856		98.1
TIGR03452	452	mycothione_red mycothione reductase. Mycothiol, a	98.09
TIGR00137	433	gid_trmFO tRNA:m(5)U-54 methyltransferase. This mo	98.09
COG1249	454	Lpd Pyruvate/2-oxoglutarate dehydrogenase complex,	98.09
PRK05976	472	dihydrolipoamide dehydrogenase; Validated	98.08
PRK07846	451	mycothione reductase; Reviewed	98.05
PRK04965	377	NADH:flavorubredoxin oxidoreductase; Provisional	98.05
PTZ00318	424	NADH dehydrogenase-like protein; Provisional	98.05
KOG2404|consensus	477		98.02
PF13434	341	K_oxygenase: L-lysine 6-monooxygenase (NADPH-requi	98.02
KOG2852|consensus	380		98.01
TIGR03169	364	Nterm_to_SelD pyridine nucleotide-disulfide oxidor	98.01
COG2509	486	Uncharacterized FAD-dependent dehydrogenases [Gene	97.98
TIGR02733	492	desat_CrtD C-3',4' desaturase CrtD. Members of thi	97.98
PRK06115	466	dihydrolipoamide dehydrogenase; Reviewed	97.97
PRK07846	451	mycothione reductase; Reviewed	97.97
PLN02576	496	protoporphyrinogen oxidase	97.96
PRK06912	458	acoL dihydrolipoamide dehydrogenase; Validated	97.96
PRK07845	466	flavoprotein disulfide reductase; Reviewed	97.95
COG0445	621	GidA Flavin-dependent tRNA uridine 5-carboxymethyl	97.95
PRK06327	475	dihydrolipoamide dehydrogenase; Validated	97.93
PRK14989	847	nitrite reductase subunit NirD; Provisional	97.93
TIGR00031	377	UDP-GALP_mutase UDP-galactopyranose mutase. The ge	97.92
TIGR03452	452	mycothione_red mycothione reductase. Mycothiol, a	97.92
PLN02268	435	probable polyamine oxidase	97.9
COG3349	485	Uncharacterized conserved protein [Function unknow	97.89
TIGR03315	1012	Se_ygfK putative selenate reductase, YgfK subunit.	97.87
PRK06292	460	dihydrolipoamide dehydrogenase; Validated	97.87
PRK06467	471	dihydrolipoamide dehydrogenase; Reviewed	97.86
TIGR02374	785	nitri_red_nirB nitrite reductase [NAD(P)H], large	97.85
KOG0685|consensus	498		97.83
TIGR02374	785	nitri_red_nirB nitrite reductase [NAD(P)H], large	97.83
KOG2665|consensus	453		97.83
PRK12779	944	putative bifunctional glutamate synthase subunit b	97.82
PF00732	296	GMC_oxred_N: GMC oxidoreductase; InterPro: IPR0001	97.81
PRK12831	464	putative oxidoreductase; Provisional	97.8
PTZ00052	499	thioredoxin reductase; Provisional	97.8
COG4529	474	Uncharacterized protein conserved in bacteria [Fun	97.78
PLN02852	491	ferredoxin-NADP+ reductase	97.77
PRK14989	847	nitrite reductase subunit NirD; Provisional	97.76
TIGR03385	427	CoA_CoA_reduc CoA-disulfide reductase. Members of	97.75
PLN02676	487	polyamine oxidase	97.74
PRK09564	444	coenzyme A disulfide reductase; Reviewed	97.71
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	97.7
PRK02106	560	choline dehydrogenase; Validated	97.7
PTZ00052	499	thioredoxin reductase; Provisional	97.7
PRK14694	468	putative mercuric reductase; Provisional	97.69
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	97.68
PRK09853	1019	putative selenate reductase subunit YgfK; Provisio	97.68
COG1148	622	HdrA Heterodisulfide reductase, subunit A and rela	97.68
TIGR01423	486	trypano_reduc trypanothione-disulfide reductase. T	97.67
PF01593	450	Amino_oxidase: Flavin containing amine oxidoreduct	97.67
PTZ00188	506	adrenodoxin reductase; Provisional	97.67
PRK05329	422	anaerobic glycerol-3-phosphate dehydrogenase subun	97.67
PRK14727	479	putative mercuric reductase; Provisional	97.66
COG0562	374	Glf UDP-galactopyranose mutase [Cell envelope biog	97.66
PRK06567	1028	putative bifunctional glutamate synthase subunit b	97.65
PRK12775	1006	putative trifunctional 2-polyprenylphenol hydroxyl	97.65
PRK13512	438	coenzyme A disulfide reductase; Provisional	97.65
PRK12810	471	gltD glutamate synthase subunit beta; Reviewed	97.64
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	97.63
PRK12778	752	putative bifunctional 2-polyprenylphenol hydroxyla	97.62
COG0446	415	HcaD Uncharacterized NAD(FAD)-dependent dehydrogen	97.61
COG1252	405	Ndh NADH dehydrogenase, FAD-containing subunit [En	97.61
PTZ00058	561	glutathione reductase; Provisional	97.6
PRK13748	561	putative mercuric reductase; Provisional	97.59
TIGR01438	484	TGR thioredoxin and glutathione reductase selenopr	97.59
PLN02529	738	lysine-specific histone demethylase 1	97.58
PRK11749	457	dihydropyrimidine dehydrogenase subunit A; Provisi	97.56
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	97.54
COG3573	552	Predicted oxidoreductase [General function predict	97.54
PTZ00153	659	lipoamide dehydrogenase; Provisional	97.52
COG3075	421	GlpB Anaerobic glycerol-3-phosphate dehydrogenase	97.52
PLN02328	808	lysine-specific histone demethylase 1 homolog	97.51
TIGR03197	381	MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouri	97.49
PTZ00153	659	lipoamide dehydrogenase; Provisional	97.48
KOG4254|consensus	561		97.38
KOG2311|consensus	679		97.38
PTZ00318	424	NADH dehydrogenase-like protein; Provisional	97.38
COG3634	520	AhpF Alkyl hydroperoxide reductase, large subunit	97.38
TIGR01292	300	TRX_reduct thioredoxin-disulfide reductase. This m	97.37
PLN02546	558	glutathione reductase	97.35
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	97.31
COG2303	542	BetA Choline dehydrogenase and related flavoprotei	97.3
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	97.3
PRK12770	352	putative glutamate synthase subunit beta; Provisio	97.3
TIGR03377	516	glycerol3P_GlpA glycerol-3-phosphate dehydrogenase	97.28
COG0493	457	GltD NADPH-dependent glutamate synthase beta chain	97.26
KOG2960|consensus	328		97.26
TIGR01317	485	GOGAT_sm_gam glutamate synthases, NADH/NADPH, smal	97.25
PRK12770	352	putative glutamate synthase subunit beta; Provisio	97.19
PLN03000	881	amine oxidase	97.18
TIGR01810	532	betA choline dehydrogenase. This enzyme is a membe	97.14
PF06100	500	Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross	97.13
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	97.13
PLN02785	587	Protein HOTHEAD	97.09
PRK13984	604	putative oxidoreductase; Provisional	97.09
PF13434	341	K_oxygenase: L-lysine 6-monooxygenase (NADPH-requi	97.07
PLN02976	1713	amine oxidase	97.03
PRK10262	321	thioredoxin reductase; Provisional	97.02
KOG1276|consensus	491		97.02
TIGR02352	337	thiamin_ThiO glycine oxidase ThiO. This family con	97.0
COG1252	405	Ndh NADH dehydrogenase, FAD-containing subunit [En	96.92
KOG1800|consensus	468		96.86
PRK11749	457	dihydropyrimidine dehydrogenase subunit A; Provisi	96.77
COG3486	436	IucD Lysine/ornithine N-monooxygenase [Secondary m	96.75
COG1206	439	Gid NAD(FAD)-utilizing enzyme possibly involved in	96.58
TIGR03169	364	Nterm_to_SelD pyridine nucleotide-disulfide oxidor	96.54
KOG0399|consensus	2142		96.51
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	96.51
KOG0405|consensus	478		96.51
KOG0404|consensus	322		96.51
KOG1336|consensus	478		96.38
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	96.38
PRK12831	464	putative oxidoreductase; Provisional	96.31
KOG1238|consensus	623		96.25
COG1251	793	NirB NAD(P)H-nitrite reductase [Energy production	96.1
PF01210	157	NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate	96.08
PRK05675	570	sdhA succinate dehydrogenase flavoprotein subunit;	96.02
PF03721	185	UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen	95.97
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	95.94
PRK06249	313	2-dehydropantoate 2-reductase; Provisional	95.9
KOG4716|consensus	503		95.81
TIGR03467	419	HpnE squalene-associated FAD-dependent desaturase.	95.76
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.71
COG0569	225	TrkA K+ transport systems, NAD-binding component [	95.69
PRK12810	471	gltD glutamate synthase subunit beta; Reviewed	95.68
PRK12778	752	putative bifunctional 2-polyprenylphenol hydroxyla	95.67
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.61
PRK07819	286	3-hydroxybutyryl-CoA dehydrogenase; Validated	95.61
PRK02705	459	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.53
PF00996	438	GDI: GDP dissociation inhibitor; InterPro: IPR0182	95.5
KOG3923|consensus	342		95.5
PF02558	151	ApbA: Ketopantoate reductase PanE/ApbA; InterPro:	95.47
TIGR01421	450	gluta_reduc_1 glutathione-disulfide reductase, ani	95.4
PRK07251	438	pyridine nucleotide-disulfide oxidoreductase; Prov	95.31
PRK06129	308	3-hydroxyacyl-CoA dehydrogenase; Validated	95.25
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	95.22
PRK07530	292	3-hydroxybutyryl-CoA dehydrogenase; Validated	95.15
PRK06719	157	precorrin-2 dehydrogenase; Validated	95.15
PRK12779	944	putative bifunctional glutamate synthase subunit b	95.13
PLN02172	461	flavin-containing monooxygenase FMO GS-OX	95.13
TIGR01350	461	lipoamide_DH dihydrolipoamide dehydrogenase. The m	95.12
PRK06130	311	3-hydroxybutyryl-CoA dehydrogenase; Validated	95.02
PLN02545	295	3-hydroxybutyryl-CoA dehydrogenase	95.01
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	95.0
TIGR02053	463	MerA mercuric reductase. This model represents the	94.91
PRK05808	282	3-hydroxybutyryl-CoA dehydrogenase; Validated	94.9
PRK11064	415	wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro	94.9
PRK06416	462	dihydrolipoamide dehydrogenase; Reviewed	94.88
PRK06035	291	3-hydroxyacyl-CoA dehydrogenase; Validated	94.86
KOG3851|consensus	446		94.85
PRK05708	305	2-dehydropantoate 2-reductase; Provisional	94.78
KOG1336|consensus	478		94.74
PRK05249	461	soluble pyridine nucleotide transhydrogenase; Prov	94.74
PTZ00082	321	L-lactate dehydrogenase; Provisional	94.73
TIGR03862	376	flavo_PP4765 uncharacterized flavoprotein, PP_4765	94.72
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	94.64
COG1004	414	Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en	94.63
PRK09260	288	3-hydroxybutyryl-CoA dehydrogenase; Validated	94.6
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	94.58
PRK06370	463	mercuric reductase; Validated	94.56
PRK00066	315	ldh L-lactate dehydrogenase; Reviewed	94.55
PRK07818	466	dihydrolipoamide dehydrogenase; Reviewed	94.52
PRK12921	305	2-dehydropantoate 2-reductase; Provisional	94.48
PRK08229	341	2-dehydropantoate 2-reductase; Provisional	94.47
PRK06522	304	2-dehydropantoate 2-reductase; Reviewed	94.45
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	94.36
PRK07502	307	cyclohexadienyl dehydrogenase; Validated	94.35
PF13478	136	XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2	94.35
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	94.34
TIGR02354	200	thiF_fam2 thiamine biosynthesis protein ThiF, fami	94.25
PRK15116	268	sulfur acceptor protein CsdL; Provisional	94.2
TIGR03315	1012	Se_ygfK putative selenate reductase, YgfK subunit.	94.19
PRK14618	328	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	94.16
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	94.14
PF00899	135	ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a	94.13
PF01262	168	AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal	94.05
PRK00094	325	gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr	93.98
PRK08268	507	3-hydroxy-acyl-CoA dehydrogenase; Validated	93.93
PRK09853	1019	putative selenate reductase subunit YgfK; Provisio	93.91
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	93.89
cd05292	308	LDH_2 A subgroup of L-lactate dehydrogenases. L-la	93.87
COG0446	415	HcaD Uncharacterized NAD(FAD)-dependent dehydrogen	93.82
PRK06116	450	glutathione reductase; Validated	93.81
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	93.8
TIGR01424	446	gluta_reduc_2 glutathione-disulfide reductase, pla	93.72
PLN02507	499	glutathione reductase	93.7
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	93.7
PRK08010	441	pyridine nucleotide-disulfide oxidoreductase; Prov	93.65
PRK04148	134	hypothetical protein; Provisional	93.56
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	93.55
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	93.45
PRK14620	326	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	93.4
TIGR03026	411	NDP-sugDHase nucleotide sugar dehydrogenase. All o	93.33
TIGR01816	565	sdhA_forward succinate dehydrogenase, flavoprotein	93.33
COG0492	305	TrxB Thioredoxin reductase [Posttranslational modi	93.27
TIGR01763	305	MalateDH_bact malate dehydrogenase, NAD-dependent.	93.25
PF00056	141	Ldh_1_N: lactate/malate dehydrogenase, NAD binding	93.14
PRK06223	307	malate dehydrogenase; Reviewed	93.12
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	93.12
PF03446	163	NAD_binding_2: NAD binding domain of 6-phosphogluc	93.11
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	93.08
KOG1346|consensus	659		93.06
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	93.04
PLN02353	473	probable UDP-glucose 6-dehydrogenase	92.96
PRK12775	1006	putative trifunctional 2-polyprenylphenol hydroxyl	92.92
PF00743	531	FMO-like: Flavin-binding monooxygenase-like; Inter	92.83
TIGR02964	246	xanthine_xdhC xanthine dehydrogenase accessory pro	92.77
PRK05690	245	molybdopterin biosynthesis protein MoeB; Provision	92.72
PRK07531	495	bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe	92.69
TIGR02355	240	moeB molybdopterin synthase sulfurylase MoeB. This	92.66
PRK07688	339	thiamine/molybdopterin biosynthesis ThiF/MoeB-like	92.66
PRK07417	279	arogenate dehydrogenase; Reviewed	92.65
PRK08644	212	thiamine biosynthesis protein ThiF; Provisional	92.61
PRK07326	237	short chain dehydrogenase; Provisional	92.55
PRK04308	445	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	92.51
PRK14619	308	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	92.5
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	92.46
KOG2304|consensus	298		92.44
cd00757	228	ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1	92.37
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	92.22
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	92.15
PRK07774	250	short chain dehydrogenase; Provisional	92.05
cd01487	174	E1_ThiF_like E1_ThiF_like. Member of superfamily o	92.04
KOG2495|consensus	491		92.02
TIGR02279	503	PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa	91.98
PRK02472	447	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	91.95
COG3486	436	IucD Lysine/ornithine N-monooxygenase [Secondary m	91.86
cd01483	143	E1_enzyme_family Superfamily of activating enzymes	91.83
PRK08328	231	hypothetical protein; Provisional	91.79
PRK15057	388	UDP-glucose 6-dehydrogenase; Provisional	91.71
PF00670	162	AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase	91.71
cd05291	306	HicDH_like L-2-hydroxyisocapronate dehydrogenases	91.7
PRK08703	239	short chain dehydrogenase; Provisional	91.7
cd01075	200	NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l	91.61
COG5044	434	MRS6 RAB proteins geranylgeranyltransferase compon	91.6
cd01339	300	LDH-like_MDH L-lactate dehydrogenase-like malate d	91.57
cd05293	312	LDH_1 A subgroup of L-lactate dehydrogenases. L-la	91.54
PRK07067	257	sorbitol dehydrogenase; Provisional	91.47
PRK08306	296	dipicolinate synthase subunit A; Reviewed	91.44
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	91.4
cd00755	231	YgdL_like Family of activating enzymes (E1) of ubi	91.36
cd01492	197	Aos1_SUMO Ubiquitin activating enzyme (E1) subunit	91.28
TIGR01915	219	npdG NADPH-dependent F420 reductase. This model re	91.27
PRK08264	238	short chain dehydrogenase; Validated	91.24
PRK15461	296	NADH-dependent gamma-hydroxybutyrate dehydrogenase	91.18
PRK00683	418	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	91.14
PRK08265	261	short chain dehydrogenase; Provisional	91.08
TIGR00561	511	pntA NAD(P) transhydrogenase, alpha subunit. In so	91.07
PRK10669	558	putative cation:proton antiport protein; Provision	90.98
PRK11730	715	fadB multifunctional fatty acid oxidation complex	90.98
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	90.87
TIGR03736	244	PRTRC_ThiF PRTRC system ThiF family protein. A nov	90.85
cd01485	198	E1-1_like Ubiquitin activating enzyme (E1), repeat	90.8
cd05311	226	NAD_bind_2_malic_enz NAD(P) binding domain of mali	90.76
COG1893	307	ApbA Ketopantoate reductase [Coenzyme metabolism]	90.71
TIGR02437	714	FadB fatty oxidation complex, alpha subunit FadB.	90.69
TIGR01505	291	tartro_sem_red 2-hydroxy-3-oxopropionate reductase	90.64
PRK12549	284	shikimate 5-dehydrogenase; Reviewed	90.63
PRK09496	453	trkA potassium transporter peripheral membrane com	90.63
PRK03369	488	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	90.62
cd01078	194	NAD_bind_H4MPT_DH NADP binding domain of methylene	90.58
PF10727	127	Rossmann-like: Rossmann-like domain; InterPro: IPR	90.58
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	90.58
PRK06194	287	hypothetical protein; Provisional	90.53
PTZ00117	319	malate dehydrogenase; Provisional	90.52
PRK08223	287	hypothetical protein; Validated	90.49
PRK01368	454	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	90.48
PRK01710	458	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	90.44
PRK13984	604	putative oxidoreductase; Provisional	90.36
KOG2755|consensus	334		90.29
PRK13394	262	3-hydroxybutyrate dehydrogenase; Provisional	90.28
PRK05600	370	thiamine biosynthesis protein ThiF; Validated	90.22
cd05191	86	NAD_bind_amino_acid_DH NAD(P) binding domain of am	90.2
cd01491	286	Ube1_repeat1 Ubiquitin activating enzyme (E1), rep	90.17

>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=100.00  E-value=4.9e-36  Score=292.26  Aligned_cols=314  Identities=14%  Similarity=0.137  Sum_probs=201.0

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeEEE
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARMIH   86 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~   86 (379)
                      +||+||||||+|+++|+.|++.|++|+|+|+.+........+++++  ++++++.++|+++|+|+.+.+.+.++..+.++
T Consensus         2 ~dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~~~~~~~~~~~~~r~~--~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~   79 (374)
T PRK06617          2 SNTVILGCGLSGMLTALSFAQKGIKTTIFESKSVKSPEFFKDIRTT--ALTPHSKNFLFSIDIWEELEKFVAEMQDIYVV   79 (374)
T ss_pred             ccEEEECCCHHHHHHHHHHHcCCCeEEEecCCCCCCCccCcCceEE--EeCHHHHHHHHHCCcHHHHHhhcCCCcEEEEE
Confidence            5999999999999999999999999999999864332222346776  78999999999999999998777788888888


Q ss_pred             ecCCcE-EEeeCC------CCCcH--------HHHhcCCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEEEe
Q psy9141          87 GQNGKL-REIPYD------PVHNQ--------VELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIG  151 (379)
Q Consensus        87 ~~~g~~-~~~~~~------~~~~~--------~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlVV~  151 (379)
                      +.++.. ..++..      +...+        +.+.+.++++++++++++++..+++++++.+. ++ +   ++||+||+
T Consensus        80 ~~~g~~~~~~~~~~~~~~g~~v~r~~L~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~v~v~~~-~~-~---~~adlvIg  154 (374)
T PRK06617         80 DNKASEILDLRNDADAVLGYVVKNSDFKKILLSKITNNPLITLIDNNQYQEVISHNDYSIIKFD-DK-Q---IKCNLLII  154 (374)
T ss_pred             ECCCceEEEecCCCCCCcEEEEEHHHHHHHHHHHHhcCCCcEEECCCeEEEEEEcCCeEEEEEc-CC-E---EeeCEEEE
Confidence            766643 222211      11111        33445567999999999999999999999887 76 5   99999999


Q ss_pred             cCCCChHHHHHh-hhcCCCCccceeeeeee----------EEEeeCCCCCccccccccceeeecCCCC-eEEEEEecC--
Q psy9141         152 ADGAYSGVRKCL-MKQSMFNYSQTYIEHGY----------MELCIPPSEDNEVWLYKNRLLSSVPEVR-KRISLRAQS--  217 (379)
Q Consensus       152 AdG~~S~vr~~l-~~~~~~~~~~~~i~~~~----------~~~~~p~~~~~~~~~~p~~~~~~~p~~~-~~~~~~~~~--  217 (379)
                      |||.+|.+|+.+ ++....+| +.++....          ++.+.+   .++++++|.      ++.. ..++|....  
T Consensus       155 ADG~~S~vR~~l~~~~~~~~y-~~~~~~~v~~~~~~~~~~~~~~~~---~g~~~~lPl------~~~~~~~~vw~~~~~~  224 (374)
T PRK06617        155 CDGANSKVRSHYFANEIEKPY-QTALTFNIKHEKPHENCAMEHFLP---LGPFALLPL------KDQYASSVIWSTSSDQ  224 (374)
T ss_pred             eCCCCchhHHhcCCCcccccC-CeEEEEEEeccCCCCCEEEEEecC---CCCEEEeEC------CCCCeEEEEEeCCHHH
Confidence            999999999988 44444555 44431111          122222   244444442      1111 122222211  


Q ss_pred             CCceeeecCCCCCCChhhhcccccccccccCCcccC----CCccccCCCCCccccCCcEEEe-eecccCCCcchhhhhHH
Q psy9141         218 LKSLMNFPRADQGGDKRDCLLHEGTSRILVPNMRLS----NHLDRDQPCKPLLDFKNPIKIQ-SHAVVNEFYKQESLIVA  292 (379)
Q Consensus       218 ~~~~~~~p~~~~~~~~~~~l~~~g~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~liG-Ah~~~~P~~GQG~n~gl  292 (379)
                      ...+...|.+.+    .+.+...  +....+.....    .+.....++..|+ ..|++|+| |++.+||+.|||+|+||
T Consensus       225 ~~~~~~~~~~~~----~~~~~~~--~~~~~~~i~~~~~~~~~~l~~~~~~~~~-~grv~LiGDAAH~~~P~~GQG~n~gl  297 (374)
T PRK06617        225 AALIVNLPVEEV----RFLTQRN--AGNSLGKITIDSEISSFPLKARIANRYF-HNRIVLIADTAHTVHPLAGQGLNQGI  297 (374)
T ss_pred             HHHHHcCCHHHH----HHHHHHh--hchhcCceeeccceeEEEeeeeecccee-cCCEEEEEcccccCCCCccccHHHHH
Confidence            111122221111    1111100  00000111000    0111222445666 35899999 44444599999999999


Q ss_pred             HHHHHHHHhhc--cccccccccc-------hhhhhheeeeEEeeecccccchhhHHHHHHhhhhc
Q psy9141         293 SLCQEKIEKMF--DNTSTYKSRH-------INFIHRSYHLYTVDIGVHKVTESSILNLLLRGMKK  348 (379)
Q Consensus       293 ~Da~~L~~~l~--~~~~~~~~~~-------~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~  348 (379)
                      +|+..|+++|.  ..+.+|++++       +..++.+.++|+++.++.+    .+-|+.+.-+.+
T Consensus       298 ~Da~~La~~L~~~~~L~~Ye~~R~~~~~~~~~~t~~l~~~f~~~~~~~~----~~R~~~l~~~~~  358 (374)
T PRK06617        298 KDIEILSMIVSNNGTLQEYQKLRQEDNFIMYKLTDELNNIFSNYSKNLR----CLRQIGFKVINN  358 (374)
T ss_pred             HHHHHHHHHHcCcchHHHHHHHHhHHHHHHHHHHHHHHHHHcCCchHHH----HHHHHHHHHHhc
Confidence            99999999985  3567888776       6667777779988777544    556666665555

>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]

Probab=100.00  E-value=9.5e-36  Score=291.45  Aligned_cols=318  Identities=21%  Similarity=0.228  Sum_probs=203.8

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCcEEEEccCC-CCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeE
Q psy9141           6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEARE-DIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARM   84 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~-~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~   84 (379)
                      .+||+||||||+||++|+.|+++|++|+|||+.+ .....    ++++  +++++++++|+++|+++++...+.+.....
T Consensus         2 ~~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~~~~~~~~----~r~~--~l~~~~~~~L~~lG~~~~i~~~~~~~~~~~   75 (387)
T COG0654           2 MLDVAIVGAGPAGLALALALARAGLDVTLLERAPRELLER----GRGI--ALSPNALRALERLGLWDRLEALGVPPLHVM   75 (387)
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCcEEEEccCccccccC----ceee--eecHhHHHHHHHcCChhhhhhccCCceeeE
Confidence            4799999999999999999999999999999982 33333    5766  799999999999999888888766555444


Q ss_pred             EEecCCc-EEEeeCCCC--------CcH--------HHHhcCCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeec
Q psy9141          85 IHGQNGK-LREIPYDPV--------HNQ--------VELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQ  147 (379)
Q Consensus        85 ~~~~~g~-~~~~~~~~~--------~~~--------~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~ad  147 (379)
                      .++..+. ...++....        ..+        +.+.+.++++++++++|+.++.+++.+++++..||++   ++||
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~~~v~v~l~~dG~~---~~a~  152 (387)
T COG0654          76 VVDDGGRRLLIFDAAELGRGALGYVVPRSDLLNALLEAARALPNVTLRFGAEVEAVEQDGDGVTVTLSFDGET---LDAD  152 (387)
T ss_pred             EEecCCceeEEecccccCCCcceEEeEhHHHHHHHHHHHhhCCCcEEEcCceEEEEEEcCCceEEEEcCCCcE---EecC
Confidence            4443332 222221111        111        4555677899999999999999999988877646765   9999


Q ss_pred             EEEecCCCChHHHHHhh-h-cCCCCccceeeeeee----------EEEeeCCCCCccccccccceeeecCCCCeEEEEE-
Q psy9141         148 LIIGADGAYSGVRKCLM-K-QSMFNYSQTYIEHGY----------MELCIPPSEDNEVWLYKNRLLSSVPEVRKRISLR-  214 (379)
Q Consensus       148 lVV~AdG~~S~vr~~l~-~-~~~~~~~~~~i~~~~----------~~~~~p~~~~~~~~~~p~~~~~~~p~~~~~~~~~-  214 (379)
                      +||+|||.+|.+|+.+. . .....|.+.++....          ++.+.+   .+++++.|.      ++....++|+ 
T Consensus       153 llVgADG~~S~vR~~~~~~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~---~~~~~~~p~------~~~~~~~~~~~  223 (387)
T COG0654         153 LLVGADGANSAVRRAAGIAEFSGRDYGQTALVANVEPEEPHEGRAGERFTH---AGPFALLPL------PDNRSSVVWSL  223 (387)
T ss_pred             EEEECCCCchHHHHhcCCCCccCCCCCceEEEEEeecCCCCCCeEEEEecC---CCceEEEec------CCCceeEEEEC
Confidence            99999999999999994 3 334477777652211          122222   234444442      2122222222 


Q ss_pred             -ecCCCceeeecCCCCCCChhhhcccccccccccCCcccC----CCccccCCCCCccccCCcEEEe-eecccCCCcchhh
Q psy9141         215 -AQSLKSLMNFPRADQGGDKRDCLLHEGTSRILVPNMRLS----NHLDRDQPCKPLLDFKNPIKIQ-SHAVVNEFYKQES  288 (379)
Q Consensus       215 -~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~liG-Ah~~~~P~~GQG~  288 (379)
                       +........++++.+...+...+.....    .+.....    ........+.+|.. .+++|+| |++++||++|||+
T Consensus       224 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----~~~~~~~~~~~~~pl~~~~a~~~~~-~Rv~LiGDAAH~~~P~~gQG~  298 (387)
T COG0654         224 PPGPAEDLQGLSDEEFLRELQRRLGERDP----LGRVTLVSSRSAFPLSLRVAERYRR-GRVVLIGDAAHAMHPLAGQGA  298 (387)
T ss_pred             ChhhHHHHhcCCHHHHHHHHHHhcCcccc----cceEEEccccccccccchhhhheec-CcEEEEeeccccCCCccccch
Confidence             2222222233333322222222222200    0111110    11222233344542 4799999 5555569999999


Q ss_pred             hhHHHHHHHHHHhhccc---------cccccccc-------hhhhhheeeeEEeeecccccchhhHHHHHHhhhhccC
Q psy9141         289 LIVASLCQEKIEKMFDN---------TSTYKSRH-------INFIHRSYHLYTVDIGVHKVTESSILNLLLRGMKKNV  350 (379)
Q Consensus       289 n~gl~Da~~L~~~l~~~---------~~~~~~~~-------~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~  350 (379)
                      |+|++|+.+|+++|.+.         +.+|++++       +.+++.+.++|.++.++.+    .+.|+.++.+....
T Consensus       299 nlgl~Da~~La~~L~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~s~~~~~~~~~~~~~~~----~~r~~~l~~~~~~~  372 (387)
T COG0654         299 NLALEDAAALAEALAAAPRPGADAAALAAYEARRRPRAEAIQKLSRALGRLFSADGPFAR----FLRNLGLRLLDRLP  372 (387)
T ss_pred             hhhhhhHHHHHHHHHHHhhcCccHHHHHHHHHhhhhHHHHHHHHHHHHhhhhccCCcHHH----HHHHHHHHhhccCc
Confidence            99999999999999753         33577776       5556666678888776665    67777777765544

>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=100.00  E-value=2.6e-35  Score=288.19  Aligned_cols=333  Identities=17%  Similarity=0.206  Sum_probs=200.0

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCC--CCCCCCCcccccccCHHHHHHHHHCCChHHHHhC-CCCc
Q psy9141           4 NSKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIR--NSGLSEGKSINLALSVRGREALRRIGLEDKLLAH-GIPM   80 (379)
Q Consensus         4 m~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~--~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~-~~~~   80 (379)
                      |..+||+||||||+|+++|+.|++.|++|+|||+.+...  .....+.+.+  +++++++++|+++|+|+.+... ..++
T Consensus         1 ~~~~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~~~~~~~~~~~~~r~~--~l~~~~~~~L~~lG~~~~~~~~~~~~~   78 (384)
T PRK08849          1 MNKYDIAVVGGGMVGAATALGFAKQGRSVAVIEGGEPKAFEPSQPMDIRVS--AISQTSVDLLESLGAWSSIVAMRVCPY   78 (384)
T ss_pred             CCcccEEEECcCHHHHHHHHHHHhCCCcEEEEcCCCcccCCCCCCCCccEE--EecHHHHHHHHHCCCchhhhHhhCCcc
Confidence            345899999999999999999999999999999886321  1111123433  6899999999999999998763 5566


Q ss_pred             eeeEEEecCCcEEEee---CCCC-----C-cH-------HHHhcCCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEE
Q psy9141          81 RARMIHGQNGKLREIP---YDPV-----H-NQ-------VELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKIT  144 (379)
Q Consensus        81 ~~~~~~~~~g~~~~~~---~~~~-----~-~~-------~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i  144 (379)
                      ..+..++.......+.   +...     . ..       ..+.+.++++++++++|++++.++++++++++ +|++   +
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~i~i~~~~~v~~~~~~~~~~~v~~~-~g~~---~  154 (384)
T PRK08849         79 KRLETWEHPECRTRFHSDELNLDQLGYIVENRLIQLGLWQQFAQYPNLTLMCPEKLADLEFSAEGNRVTLE-SGAE---I  154 (384)
T ss_pred             ceEEEEeCCCceEEecccccCCCccEEEEEcHHHHHHHHHHHHhCCCeEEECCCceeEEEEcCCeEEEEEC-CCCE---E
Confidence            6555554322211111   1000     0 11       23345578999999999999999999999998 8877   9


Q ss_pred             eecEEEecCCCChHHHHHh-hhcCCCCccceeeeeee----------EEEeeCCCCCccccccccceeeecCCCCeEEEE
Q psy9141         145 DNQLIIGADGAYSGVRKCL-MKQSMFNYSQTYIEHGY----------MELCIPPSEDNEVWLYKNRLLSSVPEVRKRISL  213 (379)
Q Consensus       145 ~adlVV~AdG~~S~vr~~l-~~~~~~~~~~~~i~~~~----------~~~~~p~~~~~~~~~~p~~~~~~~p~~~~~~~~  213 (379)
                      +||+||+|||.+|.+|+.+ ++....+|.+..+....          ++.+.|   .++.++.|.      ++....++|
T Consensus       155 ~~~lvIgADG~~S~vR~~~gi~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~---~g~~~~~pl------~~~~~~~~~  225 (384)
T PRK08849        155 EAKWVIGADGANSQVRQLAGIGITAWDYRQHCMLINVETEQPQQDITWQQFTP---SGPRSFLPL------CGNQGSLVW  225 (384)
T ss_pred             EeeEEEEecCCCchhHHhcCCCceeccCCCeEEEEEEEcCCCCCCEEEEEeCC---CCCEEEeEc------CCCceEEEE
Confidence            9999999999999999998 66666677665431111          111111   122222221      222222333


Q ss_pred             EecC--CCceeeecCCCCCCChhhhcccccccccccCCcccC---CCccccCCCCCccccCCcEEEe--eecccCCCcch
Q psy9141         214 RAQS--LKSLMNFPRADQGGDKRDCLLHEGTSRILVPNMRLS---NHLDRDQPCKPLLDFKNPIKIQ--SHAVVNEFYKQ  286 (379)
Q Consensus       214 ~~~~--~~~~~~~p~~~~~~~~~~~l~~~g~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~liG--Ah~~~~P~~GQ  286 (379)
                      +...  .......+.+.+.+.+.+.+...  .    +.+...   .+.....++..|+ ..|++|+|  ||+| ||++||
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~----~~~~~~~~~~~~l~~~~~~~~~-~grv~LlGDAAH~~-~P~~GQ  297 (384)
T PRK08849        226 YDSPKRIKQLSAMNPEQLRSEILRHFPAE--L----GEIKVLQHGSFPLTRRHAQQYV-KNNCVLLGDAAHTI-NPLAGQ  297 (384)
T ss_pred             ECCHHHHHHHHcCCHHHHHHHHHHHhhhh--h----CcEEeccceEeeccccccchhc-cCCEEEEEcccccC-CCCccc
Confidence            2111  00111111111111111111111  0    111100   0111223455666 35899999  5555 599999


Q ss_pred             hhhhHHHHHHHHHHhhcc-------ccccccccc-------hhhhhheeeeEEeeecccccchhhHHHHHHhhhhccCCC
Q psy9141         287 ESLIVASLCQEKIEKMFD-------NTSTYKSRH-------INFIHRSYHLYTVDIGVHKVTESSILNLLLRGMKKNVPM  352 (379)
Q Consensus       287 G~n~gl~Da~~L~~~l~~-------~~~~~~~~~-------~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~  352 (379)
                      |+|+|++||.+|+++|.+       .+..|++++       +.+++.++++|+.+.+|.+    -.-|+.++-+.+..|+
T Consensus       298 G~n~al~Da~~L~~~l~~~~~~~~~~L~~Ye~~R~~~~~~~~~~~~~~~~~~~~~~~~~~----~~R~~~l~~~~~~~~~  373 (384)
T PRK08849        298 GVNLGFKDVDVLLAETEKQGVLNDASFARYERRRRPDNLLMQTGMDLFYKTFSNSLTPLK----FVRNAALKLAENSGPL  373 (384)
T ss_pred             hHhHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchHHH----HHHHHHHHHHhccHHH
Confidence            999999999999999863       344577665       5556666778887655433    3455555544443332


Q ss_pred             ChhhHHHHHHHhccc
Q psy9141         353 PNKKLDMILESANGL  367 (379)
Q Consensus       353 ~~~~~~~~~~~~~~~  367 (379)
                       +   +.+.+.|||+
T Consensus       374 -k---~~~~~~~~g~  384 (384)
T PRK08849        374 -K---TQVLKYALGM  384 (384)
T ss_pred             -H---HHHHHHHcCC
Confidence             1   2345556664

>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated

Probab=100.00  E-value=1.6e-35  Score=291.64  Aligned_cols=336  Identities=14%  Similarity=0.169  Sum_probs=204.7

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHhCCCcEEEEccC-CCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhC-CCCce
Q psy9141           4 NSKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAR-EDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAH-GIPMR   81 (379)
Q Consensus         4 m~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~-~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~-~~~~~   81 (379)
                      |..+||+||||||+|+++|+.|++.|++|+|+|+. +........+.+++  +++++++++|+++|+|+.+.+. +.++.
T Consensus         2 m~~~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~~r~~--~l~~~~~~~L~~lGl~~~l~~~~~~~~~   79 (405)
T PRK08850          2 MQSVDVAIIGGGMVGLALAAALKESDLRIAVIEGQLPEEALNELPDVRVS--ALSRSSEHILRNLGAWQGIEARRAAPYI   79 (405)
T ss_pred             CCcCCEEEECccHHHHHHHHHHHhCCCEEEEEcCCCCcccccCCCCccee--cccHHHHHHHHhCCchhhhhhhhCCccc
Confidence            45789999999999999999999999999999997 32221112345665  7899999999999999999864 67777


Q ss_pred             eeEEEecCCcE-EEeeC--------CCCCcH--------HHHhcCCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEE
Q psy9141          82 ARMIHGQNGKL-REIPY--------DPVHNQ--------VELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKIT  144 (379)
Q Consensus        82 ~~~~~~~~g~~-~~~~~--------~~~~~~--------~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i  144 (379)
                      .+.+++.++.. ..++.        +....+        +.+.+.++++++++++|++++.+++.+++++. +|++   +
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~v~~~-~g~~---~  155 (405)
T PRK08850         80 AMEVWEQDSFARIEFDAESMAQPDLGHIVENRVIQLALLEQVQKQDNVTLLMPARCQSIAVGESEAWLTLD-NGQA---L  155 (405)
T ss_pred             EEEEEeCCCCceEEEeccccCCCccEEEEEHHHHHHHHHHHHhcCCCeEEEcCCeeEEEEeeCCeEEEEEC-CCCE---E
Confidence            78887765211 11111        111111        33445568999999999999998889999998 8887   9


Q ss_pred             eecEEEecCCCChHHHHHh-hhcCCCCccceeeeeeeEEEeeCCCCCccccccccceeeecCCCCeEEEEEecCCCcee-
Q psy9141         145 DNQLIIGADGAYSGVRKCL-MKQSMFNYSQTYIEHGYMELCIPPSEDNEVWLYKNRLLSSVPEVRKRISLRAQSLKSLM-  222 (379)
Q Consensus       145 ~adlVV~AdG~~S~vr~~l-~~~~~~~~~~~~i~~~~~~~~~p~~~~~~~~~~p~~~~~~~p~~~~~~~~~~~~~~~~~-  222 (379)
                      +||+||+|||.+|.+|+.+ ++....+|.+.++.... ....+.  ..       ....++... ..+.+.|...+..+ 
T Consensus       156 ~a~lvIgADG~~S~vR~~~~~~~~~~~~~~~~~~~~v-~~~~~~--~~-------~~~~~~~~~-g~~~~lp~~~~~~~~  224 (405)
T PRK08850        156 TAKLVVGADGANSWLRRQMDIPLTHWDYGHSALVANV-RTVDPH--NS-------VARQIFTPQ-GPLAFLPMSEPNMSS  224 (405)
T ss_pred             EeCEEEEeCCCCChhHHHcCCCeeEEeeccEEEEEEE-EccCCC--CC-------EEEEEEcCC-CceEEEECCCCCeEE
Confidence            9999999999999999998 55566667666542211 111111  00       011111111 12233333222111 


Q ss_pred             ---eecC-----------CCCCCChhhhcccc-cccccccCCcccCCCccccCCCCCccccCCcEEEe-eecccCCCcch
Q psy9141         223 ---NFPR-----------ADQGGDKRDCLLHE-GTSRILVPNMRLSNHLDRDQPCKPLLDFKNPIKIQ-SHAVVNEFYKQ  286 (379)
Q Consensus       223 ---~~p~-----------~~~~~~~~~~l~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liG-Ah~~~~P~~GQ  286 (379)
                         ..|.           +++...+.+.+... +.... ....  ..+.........|. ..|++++| |++.+||+.||
T Consensus       225 ~~w~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~--~~~pl~~~~~~~~~-~~rv~LiGDAAH~~~P~~GQ  300 (405)
T PRK08850        225 IVWSTEPLRAEALLAMSDEQFNKALTAEFDNRLGLCEV-VGER--QAFPLKMRYARDFV-RERVALVGDAAHTIHPLAGQ  300 (405)
T ss_pred             EEEECCHHHHHHHHcCCHHHHHHHHHHHHhhhhCcEEE-cccc--cEEecceeeccccc-cCcEEEEEhhhhcCCccccc
Confidence               1111           11111111111111 00000 0000  00011112234555 34899999 44444599999


Q ss_pred             hhhhHHHHHHHHHHhhcc------------ccccccccc-------hhhhhheeeeEEeeecccccchhhHHHHHHhhhh
Q psy9141         287 ESLIVASLCQEKIEKMFD------------NTSTYKSRH-------INFIHRSYHLYTVDIGVHKVTESSILNLLLRGMK  347 (379)
Q Consensus       287 G~n~gl~Da~~L~~~l~~------------~~~~~~~~~-------~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~  347 (379)
                      |+|+|++|+.+|+++|.+            .+.+|++++       +..++.+.++|+.+.++.+    +.-|+++.-+.
T Consensus       301 G~n~ai~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~~~~l~~~~~~~~~~~~----~~R~~~l~~~~  376 (405)
T PRK08850        301 GVNLGLLDAASLAQEILALWQQGRDIGLKRNLRGYERWRKAEAAKMIAAMQGFRDLFSGSNPAKK----LVRGIGMSLAG  376 (405)
T ss_pred             cHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHCCCchHHH----HHHHHHHHHHh
Confidence            999999999999999853            244577665       5566677778887766543    55566555444


Q ss_pred             ccCCCChhhHHHHHHHhcccc
Q psy9141         348 KNVPMPNKKLDMILESANGLG  368 (379)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~  368 (379)
                      +. |..+   +.++..++|+.
T Consensus       377 ~~-~~~k---~~~~~~~~g~~  393 (405)
T PRK08850        377 QL-PGAK---DEIMKRALGLK  393 (405)
T ss_pred             hC-HHHH---HHHHHHHhCCC
Confidence            42 2221   45667788864

>PRK08013 oxidoreductase; Provisional

Probab=100.00  E-value=3e-34  Score=282.11  Aligned_cols=337  Identities=15%  Similarity=0.150  Sum_probs=199.8

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCC--CCCCcccccccCHHHHHHHHHCCChHHHHhC-CCCc
Q psy9141           4 NSKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSG--LSEGKSINLALSVRGREALRRIGLEDKLLAH-GIPM   80 (379)
Q Consensus         4 m~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~--~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~-~~~~   80 (379)
                      |.++||+||||||+|+++|+.|++.|++|+|+|+.+.+....  ..+-+..  +++++++++|+++|+|+.+.+. ..++
T Consensus         1 m~~~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~~~~~~g~~~~~r~~--~l~~~s~~~L~~lGl~~~~~~~~~~~~   78 (400)
T PRK08013          1 MQSVDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVPEPLAADAPPALRVS--AINAASEKLLTRLGVWQDILARRASCY   78 (400)
T ss_pred             CCcCCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCCcccccCCCCCceee--ecchhHHHHHHHcCCchhhhhhcCccc
Confidence            446899999999999999999999999999999998654211  1122433  6789999999999999998765 5677


Q ss_pred             eeeEEEecC--CcEEEee---CCCC-----CcH--------HHHhcCCCCeEEeCceEEEEEecCCeEEEEEccCCceeE
Q psy9141          81 RARMIHGQN--GKLREIP---YDPV-----HNQ--------VELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETK  142 (379)
Q Consensus        81 ~~~~~~~~~--g~~~~~~---~~~~-----~~~--------~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~  142 (379)
                      ....+++.+  +.. .+.   ++..     ..+        +.+.+.++++++++++|++++.+++++++++. +|++  
T Consensus        79 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~-~g~~--  154 (400)
T PRK08013         79 HGMEVWDKDSFGRI-AFDDQSMGYSHLGHIIENSVIHYALWQKAQQSSDITLLAPAELQQVAWGENEAFLTLK-DGSM--  154 (400)
T ss_pred             cEEEEEeCCCCceE-EEcccccCCCccEEEEEhHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCeEEEEEc-CCCE--
Confidence            777777654  221 111   1111     111        23444568999999999999998899999998 8887  


Q ss_pred             EEeecEEEecCCCChHHHHHh-hhcCCCCccceeeeeeeEEEeeCCCCCccccccccceeeecCCCCeEEEEEecCCCc-
Q psy9141         143 ITDNQLIIGADGAYSGVRKCL-MKQSMFNYSQTYIEHGYMELCIPPSEDNEVWLYKNRLLSSVPEVRKRISLRAQSLKS-  220 (379)
Q Consensus       143 ~i~adlVV~AdG~~S~vr~~l-~~~~~~~~~~~~i~~~~~~~~~p~~~~~~~~~~p~~~~~~~p~~~~~~~~~~~~~~~-  220 (379)
                       ++||+||+|||++|.+|+.+ ++....+|.+.++... .+...|.  .+ ..     ...+.++.  .+.+.|...+. 
T Consensus       155 -i~a~lvVgADG~~S~vR~~~~~~~~~~~~~~~~~~~~-v~~~~~~--~~-~~-----~~~~~~~g--~~~~~p~~~~~~  222 (400)
T PRK08013        155 -LTARLVVGADGANSWLRNKADIPLTFWDYQHHALVAT-IRTEEPH--DA-VA-----RQVFHGDG--ILAFLPLSDPHL  222 (400)
T ss_pred             -EEeeEEEEeCCCCcHHHHHcCCCccccccCcEEEEEE-EeccCCC--CC-EE-----EEEEcCCC--CEEEEECCCCCe
Confidence             99999999999999999998 6666666676654221 1111111  00 00     01111111  12222322111 


Q ss_pred             --ee-eecCCC---CCCChhhhcccc--cccccccCCcccC----CCccccCCCCCccccCCcEEEe-eecccCCCcchh
Q psy9141         221 --LM-NFPRAD---QGGDKRDCLLHE--GTSRILVPNMRLS----NHLDRDQPCKPLLDFKNPIKIQ-SHAVVNEFYKQE  287 (379)
Q Consensus       221 --~~-~~p~~~---~~~~~~~~l~~~--g~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~liG-Ah~~~~P~~GQG  287 (379)
                        +. .++.+.   ......+.|.+.  ..+....+.....    .+......+..|+ ..|++|+| |++.+||+.|||
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~-~grv~LiGDAAH~~~P~~GQG  301 (400)
T PRK08013        223 CSIVWSLSPEEAQRMQQAPEEEFNRALAIAFDNRLGLCELESERQVFPLTGRYARQFA-AHRLALVGDAAHTIHPLAGQG  301 (400)
T ss_pred             EEEEEEcCHHHHHHHHcCCHHHHHHHHHHHHhHhhCceEecCCccEEecceeeccccc-CCcEEEEechhhcCCccccCc
Confidence              11 112110   000011111110  0000000000000    0011112344555 35899999 444455999999


Q ss_pred             hhhHHHHHHHHHHhhcc------------ccccccccc-------hhhhhheeeeEEeeecccccchhhHHHHHHhhhhc
Q psy9141         288 SLIVASLCQEKIEKMFD------------NTSTYKSRH-------INFIHRSYHLYTVDIGVHKVTESSILNLLLRGMKK  348 (379)
Q Consensus       288 ~n~gl~Da~~L~~~l~~------------~~~~~~~~~-------~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~  348 (379)
                      +|+|++||.+|+++|..            .+..|++++       +..++-+.++|+.+.|+.+    +.-|++++-+.+
T Consensus       302 ~n~gi~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~~~~~~~l~~~~~~~~~----~~R~~~l~~~~~  377 (400)
T PRK08013        302 VNLGFMDAAELIAELRRLHRQGKDIGQHLYLRRYERSRKHSAALMLAGMQGFRDLFAGNNPAKK----LLRDIGLKLADT  377 (400)
T ss_pred             hhhhHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHH----HHHHHHHHHHhh
Confidence            99999999999999852            245677665       3445556668877666444    445555554433


Q ss_pred             cCCCChhhHHHHHHHhccc
Q psy9141         349 NVPMPNKKLDMILESANGL  367 (379)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~  367 (379)
                       .|..+   +.+...+||+
T Consensus       378 -~~~~~---~~~~~~~~g~  392 (400)
T PRK08013        378 -LPGVK---PQLIRQAMGL  392 (400)
T ss_pred             -CHHHH---HHHHHHHccC
Confidence             22111   3344556764

>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated

Probab=100.00  E-value=5.6e-34  Score=279.54  Aligned_cols=322  Identities=17%  Similarity=0.192  Sum_probs=194.5

Q ss_pred             CCCCCCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCC-CCCCCcccccccCHHHHHHHHHCCChHHHHhC-CC
Q psy9141           1 MKCNSKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNS-GLSEGKSINLALSVRGREALRRIGLEDKLLAH-GI   78 (379)
Q Consensus         1 M~~m~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~-~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~-~~   78 (379)
                      |+.+..+||+||||||+|+++|+.|+++|++|+|||+.+.+... ...+.+.+  ++++++.++|+++|+|+.+.+. ..
T Consensus         1 ~~~~~~~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~~~~~~~~~~~~r~~--~l~~~~~~~l~~lGl~~~~~~~~~~   78 (392)
T PRK08773          1 MSRRSRRDAVIVGGGVVGAACALALADAGLSVALVEGREPPRWQADQPDLRVY--AFAADNAALLDRLGVWPAVRAARAQ   78 (392)
T ss_pred             CCCCCCCCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCCCcccccCCCCCEEE--EecHHHHHHHHHCCchhhhhHhhCC
Confidence            66566799999999999999999999999999999998754321 11223444  6889999999999999998764 56


Q ss_pred             CceeeEEEecCCc-EEEeeCCC--------CCcH-------HHHhcCCCCeEEeCceEEEEEecCCeEEEEEccCCceeE
Q psy9141          79 PMRARMIHGQNGK-LREIPYDP--------VHNQ-------VELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETK  142 (379)
Q Consensus        79 ~~~~~~~~~~~g~-~~~~~~~~--------~~~~-------~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~  142 (379)
                      ++....+++..+. ...++...        ...+       ....+..+++++++++|++++.+++++++++. +|++  
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~-~g~~--  155 (392)
T PRK08773         79 PYRRMRVWDAGGGGELGFDADTLGREQLGWIVENDLLVDRLWAALHAAGVQLHCPARVVALEQDADRVRLRLD-DGRR--  155 (392)
T ss_pred             cccEEEEEeCCCCceEEechhccCCCcCEEEEEhHHHHHHHHHHHHhCCCEEEcCCeEEEEEecCCeEEEEEC-CCCE--
Confidence            6766666664432 12221110        0111       12233468999999999999998889998888 8876  


Q ss_pred             EEeecEEEecCCCChHHHHHh-hhcCCCCccceeeeeeeEEEeeCCCCCccccccccceeeecCCCCeEEEEEecCCCce
Q psy9141         143 ITDNQLIIGADGAYSGVRKCL-MKQSMFNYSQTYIEHGYMELCIPPSEDNEVWLYKNRLLSSVPEVRKRISLRAQSLKSL  221 (379)
Q Consensus       143 ~i~adlVV~AdG~~S~vr~~l-~~~~~~~~~~~~i~~~~~~~~~p~~~~~~~~~~p~~~~~~~p~~~~~~~~~~~~~~~~  221 (379)
                       ++||+||+|||.+|.+|+.+ ++....+|.+..+. .+.+...|. ....       ...+.++.  .+.+.|...+..
T Consensus       156 -~~a~~vV~AdG~~S~vr~~~g~~~~~~~~~~~~~~-~~v~~~~~~-~~~~-------~~~~~~~g--~~~~lP~~~~~~  223 (392)
T PRK08773        156 -LEAALAIAADGAASTLRELAGLPVSRHDYAQRGVV-AFVDTEHPH-QATA-------WQRFLPTG--PLALLPFADGRS  223 (392)
T ss_pred             -EEeCEEEEecCCCchHHHhhcCCceEEEeccEEEE-EEEEccCCC-CCEE-------EEEeCCCC--cEEEEECCCCce
Confidence             99999999999999999987 44444445544431 111111111 0000       00111111  122222221111


Q ss_pred             --e-eecC-----------CCCCCChhhhcccc-cccccccCCcccCCCccccCCCCCccccCCcEEEe-eecccCCCcc
Q psy9141         222 --M-NFPR-----------ADQGGDKRDCLLHE-GTSRILVPNMRLSNHLDRDQPCKPLLDFKNPIKIQ-SHAVVNEFYK  285 (379)
Q Consensus       222 --~-~~p~-----------~~~~~~~~~~l~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liG-Ah~~~~P~~G  285 (379)
                        . .+|.           +.+..++.+.+... +..........   +.....++..|. ..|++|+| |++.+||+.|
T Consensus       224 ~~~w~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~~~-~~rv~LiGDAAH~~~P~~G  299 (392)
T PRK08773        224 SIVWTLPDAEAERVLALDEAAFSRELTQAFAARLGEVRVASPRTA---FPLRRQLVQQYV-SGRVLTLGDAAHVVHPLAG  299 (392)
T ss_pred             EEEEECCHHHHHHHHcCCHHHHHHHHHHHHhhhhcCeEecCCccE---eechhhhhhhhc-CCcEEEEechhhcCCCchh
Confidence              1 1121           11111122222211 11111000000   011122345565 35899999 4444559999


Q ss_pred             hhhhhHHHHHHHHHHhhcc------------ccccccccc-------hhhhhheeeeEEeeecccccchhhHHHHHHhhh
Q psy9141         286 QESLIVASLCQEKIEKMFD------------NTSTYKSRH-------INFIHRSYHLYTVDIGVHKVTESSILNLLLRGM  346 (379)
Q Consensus       286 QG~n~gl~Da~~L~~~l~~------------~~~~~~~~~-------~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~  346 (379)
                      ||+|+|++|+..|+++|.+            .+.+|++++       +..++-+.++|+++.++.+    ++-|+.+.-+
T Consensus       300 qG~n~al~Da~~La~~L~~~~~~~~~~~~~~~l~~y~~~R~~~~~~~~~~~~~l~~~f~~~~~~~~----~~r~~~l~~~  375 (392)
T PRK08773        300 QGVNLGLRDVAALQQLVRQAHARRADWAAPHRLQRWARTRRSDNTVAAYGFDAINRVFSNDEMHLT----LLRGSVLGLA  375 (392)
T ss_pred             chhhhhHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHH----HHHHHHHHHH
Confidence            9999999999999999874            344687765       3334556678999888666    4444444433


Q ss_pred             h
Q psy9141         347 K  347 (379)
Q Consensus       347 ~  347 (379)
                      .
T Consensus       376 ~  376 (392)
T PRK08773        376 G  376 (392)
T ss_pred             h
Confidence            3

>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=100.00  E-value=4.2e-34  Score=280.01  Aligned_cols=333  Identities=16%  Similarity=0.194  Sum_probs=205.1

Q ss_pred             CCCCCCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCc
Q psy9141           1 MKCNSKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPM   80 (379)
Q Consensus         1 M~~m~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~   80 (379)
                      |+ |+.+||+||||||+|+++|+.|+++|++|+|||+.+...     +++++  ++.+++.++|+++|+|+.+.+.+.++
T Consensus         3 ~~-~~~~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~~~-----~~r~~--~l~~~s~~~l~~lgl~~~~~~~~~~~   74 (388)
T PRK07494          3 ME-KEHTDIAVIGGGPAGLAAAIALARAGASVALVAPEPPYA-----DLRTT--ALLGPSIRFLERLGLWARLAPHAAPL   74 (388)
T ss_pred             CC-CCCCCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCCCC-----Ccchh--hCcHHHHHHHHHhCchhhhHhhccee
Confidence            44 678999999999999999999999999999999987542     24444  67889999999999999998888888


Q ss_pred             eeeEEEecCCcEEE---eeC----------CCCCcH--------HHHhcCCCCeEEeCceEEEEEecCCeEEEEEccCCc
Q psy9141          81 RARMIHGQNGKLRE---IPY----------DPVHNQ--------VELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNS  139 (379)
Q Consensus        81 ~~~~~~~~~g~~~~---~~~----------~~~~~~--------~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~  139 (379)
                      ..+.+++.++....   ..+          ++...+        +.+.+.+++. +++++|++++.+++++++++. +|+
T Consensus        75 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~~~-~~~~~v~~i~~~~~~~~v~~~-~g~  152 (388)
T PRK07494         75 QSMRIVDATGRLIRAPEVRFRAAEIGEDAFGYNIPNWLLNRALEARVAELPNIT-RFGDEAESVRPREDEVTVTLA-DGT  152 (388)
T ss_pred             eEEEEEeCCCCCCCCceEEEcHHhcCCCccEEEeEhHHHHHHHHHHHhcCCCcE-EECCeeEEEEEcCCeEEEEEC-CCC
Confidence            88888876553210   111          111111        2334445666 889999999999999999888 887


Q ss_pred             eeEEEeecEEEecCCCChHHHHHh-hhcCCCCccceeeeeeeEEEeeCCC--------CCccccccccceeeecCCCCeE
Q psy9141         140 ETKITDNQLIIGADGAYSGVRKCL-MKQSMFNYSQTYIEHGYMELCIPPS--------EDNEVWLYKNRLLSSVPEVRKR  210 (379)
Q Consensus       140 ~~~~i~adlVV~AdG~~S~vr~~l-~~~~~~~~~~~~i~~~~~~~~~p~~--------~~~~~~~~p~~~~~~~p~~~~~  210 (379)
                      +   ++||+||+|||.+|.+|+.+ ++.....|.+.++...+ ....|..        +.+++++.|.      ++....
T Consensus       153 ~---~~a~~vI~AdG~~S~vr~~~g~~~~~~~~~~~~~~~~v-~~~~~~~~~~~~~~~~~g~~~~~Pl------~~~~~~  222 (388)
T PRK07494        153 T---LSARLVVGADGRNSPVREAAGIGVRTWSYPQKALVLNF-THSRPHQNVSTEFHTEGGPFTQVPL------PGRRSS  222 (388)
T ss_pred             E---EEEeEEEEecCCCchhHHhcCCCceecCCCCEEEEEEE-eccCCCCCEEEEEeCCCCcEEEEEC------CCCcEE
Confidence            7   99999999999999999998 55556677776542211 1111110        1122222221      122122


Q ss_pred             EEEEecC--CCceeeecCCCCCCChhhhcccccccccccCCcccCC----CccccCCCCCccccCCcEEEe-eecccCCC
Q psy9141         211 ISLRAQS--LKSLMNFPRADQGGDKRDCLLHEGTSRILVPNMRLSN----HLDRDQPCKPLLDFKNPIKIQ-SHAVVNEF  283 (379)
Q Consensus       211 ~~~~~~~--~~~~~~~p~~~~~~~~~~~l~~~g~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~liG-Ah~~~~P~  283 (379)
                      ++|....  ..++...+.+    +..+.+.+.  +....+.+....    +.........|. ..|++++| |++.+||+
T Consensus       223 ~v~~~~~~~~~~~~~~~~~----~~~~~~~~~--~~~~l~~~~~~~~~~~~~l~~~~~~~~~-~~rv~LiGDAAH~~~P~  295 (388)
T PRK07494        223 LVWVVRPAEAERLLALSDA----ALSAAIEER--MQSMLGKLTLEPGRQAWPLSGQVAHRFA-AGRTALVGEAAHVFPPI  295 (388)
T ss_pred             EEEECCHHHHHHHHcCCHH----HHHHHHHHH--HhhhcCCeEEccCCcEeechHHHHHhhc-cCceEEEEhhhhcCCch
Confidence            2222111  0000111111    111111110  000111111110    011111123444 34899999 44445599


Q ss_pred             cchhhhhHHHHHHHHHHhhcc---------ccccccccc-------hhhhhheeeeEEeeecccccchhhHHHHHHhhhh
Q psy9141         284 YKQESLIVASLCQEKIEKMFD---------NTSTYKSRH-------INFIHRSYHLYTVDIGVHKVTESSILNLLLRGMK  347 (379)
Q Consensus       284 ~GQG~n~gl~Da~~L~~~l~~---------~~~~~~~~~-------~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~  347 (379)
                      +|||+|+|++|+..|+++|.+         .+.+|++++       +..++.+.++|+.+.++.+    ..-|+++.-+.
T Consensus       296 ~GqG~n~~l~Da~~La~~L~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~----~~R~~~l~~~~  371 (388)
T PRK07494        296 GAQGLNLGLRDVATLVEIVEDRPEDPGSAAVLAAYDRARRPDILSRTASVDLLNRSLLSDFLPVQ----DLRAAGLHLLY  371 (388)
T ss_pred             hhcccchhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHH----HHHHHHHHHHh
Confidence            999999999999999999864         333577665       4667777788888777753    45666666554


Q ss_pred             ccCCCChhhHHHHHHHhcccc
Q psy9141         348 KNVPMPNKKLDMILESANGLG  368 (379)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~  368 (379)
                      + .|..++   .+.+.|||-|
T Consensus       372 ~-~~~~~~---~~~~~~~~~~  388 (388)
T PRK07494        372 S-FGPLRR---LFMREGLGPG  388 (388)
T ss_pred             h-CHHHHH---HHHHHhcCCC
Confidence            4 232222   3456777754

>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6

Probab=100.00  E-value=5.8e-34  Score=283.10  Aligned_cols=318  Identities=18%  Similarity=0.232  Sum_probs=197.9

Q ss_pred             CcEEEECCChHHHHHHHHHHh----CCCcEEEEccCCCCCCC--------CCCCCcccccccCHHHHHHHHHCCChHHHH
Q psy9141           7 KSVVIVGGGLVGSLSACMFAK----NQYEVNLYEAREDIRNS--------GLSEGKSINLALSVRGREALRRIGLEDKLL   74 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~----~G~~V~viE~~~~~~~~--------~~~~g~~i~~al~~~~~~~l~~lGl~~~l~   74 (379)
                      |||+||||||+|+++|+.|++    +|++|+|||+.+.+...        +..++|++  +++++++++|+++|+|+.+.
T Consensus         1 ~DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~~~~~~~~~~~~~~~~~~~~R~~--~l~~~s~~~L~~lG~~~~l~   78 (437)
T TIGR01989         1 FDVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAVDNPKLKSRNYEKPDGPYSNRVS--SITPASISFFKKIGAWDHIQ   78 (437)
T ss_pred             CcEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCCCCcccccccccCCCCCCCCCeE--EcCHHHHHHHHHcCchhhhh
Confidence            699999999999999999999    89999999996543321        11346766  79999999999999999997


Q ss_pred             hC-CCCceeeEEEecCCcEEEeeCCC---------CCcH--------HHHhcCC--CCeEEeCceEEEEEec-------C
Q psy9141          75 AH-GIPMRARMIHGQNGKLREIPYDP---------VHNQ--------VELEQYP--DCNIYFQHKLINLDVN-------S  127 (379)
Q Consensus        75 ~~-~~~~~~~~~~~~~g~~~~~~~~~---------~~~~--------~~~~~~~--gv~i~~~~~v~~i~~~-------~  127 (379)
                      +. ..++..+.+++..+.. ...|..         ...+        +.+.+..  +++++++++|++++.+       +
T Consensus        79 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~~~v~i~~~~~v~~i~~~~~~~~~~~  157 (437)
T TIGR01989        79 SDRIQPFGRMQVWDGCSLA-LIRFDRDNGKEDMACIIENDNIQNSLYNRLQEYNGDNVKILNPARLISVTIPSKYPNDNS  157 (437)
T ss_pred             hhcCCceeeEEEecCCCCc-eEEeecCCCCCceEEEEEHHHHHHHHHHHHHhCCCCCeEEecCCeeEEEEeccccccCCC
Confidence            65 4577777777654431 122211         1111        3334444  6999999999999752       4


Q ss_pred             CeEEEEEccCCceeEEEeecEEEecCCCChHHHHHh-hhcCCCCccceeeeeee-----------EEEeeCCCCCccccc
Q psy9141         128 GNVTFYRTEDNSETKITDNQLIIGADGAYSGVRKCL-MKQSMFNYSQTYIEHGY-----------MELCIPPSEDNEVWL  195 (379)
Q Consensus       128 ~~v~v~~~~~G~~~~~i~adlVV~AdG~~S~vr~~l-~~~~~~~~~~~~i~~~~-----------~~~~~p~~~~~~~~~  195 (379)
                      +++++++. +|++   ++||+||+|||++|.+|+.+ +...+.+|.+.++....           ++.+.+   .+++++
T Consensus       158 ~~v~v~~~-~g~~---i~a~llVgADG~~S~vR~~~gi~~~g~~y~q~~~v~~v~~~~~~~~~~~~~~f~~---~g~~~~  230 (437)
T TIGR01989       158 NWVHITLS-DGQV---LYTKLLIGADGSNSNVRKAANIDTTGWNYNQHAVVATLKLEEATENDVAWQRFLP---TGPIAL  230 (437)
T ss_pred             CceEEEEc-CCCE---EEeeEEEEecCCCChhHHHcCCCccceeeccEEEEEEEEcccCCCCCeEEEEECC---CCCEEE
Confidence            67888888 8887   99999999999999999998 77777888887652211           122222   344555


Q ss_pred             cccceeeecCCCCeEEEEEecC--CCceeeecCCCCCCChhhhc--------------------ccc-cccc--------
Q psy9141         196 YKNRLLSSVPEVRKRISLRAQS--LKSLMNFPRADQGGDKRDCL--------------------LHE-GTSR--------  244 (379)
Q Consensus       196 ~p~~~~~~~p~~~~~~~~~~~~--~~~~~~~p~~~~~~~~~~~l--------------------~~~-g~~~--------  244 (379)
                      +|.      ++....++|....  ...+..++.+++...+...+                    ... ++..        
T Consensus       231 lPl------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~  304 (437)
T TIGR01989       231 LPL------PDNNSTLVWSTSPEEALRLLSLPPEDFVDALNAAFDLGYSDHPYSYLLDYAMEKLNEDIGFRTEGSKSCFQ  304 (437)
T ss_pred             eEC------CCCCEEEEEeCCHHHHHHHHcCCHHHHHHHHHHHhcccccccccccccccccccccccccccccccccccc
Confidence            542      2222233332211  11111222222211111111                    000 0000        


Q ss_pred             c--ccCCccc---CCCccccCCCCCccccCCcEEEe-eecccCCCcchhhhhHHHHHHHHHHhhcc------------cc
Q psy9141         245 I--LVPNMRL---SNHLDRDQPCKPLLDFKNPIKIQ-SHAVVNEFYKQESLIVASLCQEKIEKMFD------------NT  306 (379)
Q Consensus       245 ~--~~~~~~~---~~~~~~~~~~~~~~~~~~~~liG-Ah~~~~P~~GQG~n~gl~Da~~L~~~l~~------------~~  306 (379)
                      .  .......   ..+.....++..|. ..|++++| |++++||+.|||+|+||+|+.+|+++|.+            .+
T Consensus       305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~rv~l~GDAAH~~~P~~GqG~n~~l~Da~~La~~L~~~~~~~~~~~~~~~L  383 (437)
T TIGR01989       305 VPPRVIGVVDKSRAAFPLGLGHADEYV-TKRVALVGDAAHRVHPLAGQGVNLGFGDVASLVKALAEAVSVGADIGSISSL  383 (437)
T ss_pred             cCchhheeecccceeEEecccchhhcc-CCCEEEEchhhcCCCCChhhhHHHHHHHHHHHHHHHHHHHhcCCChhHHHHH
Confidence            0  0000000   00011222334454 35899999 55555699999999999999999999863            34


Q ss_pred             ccccccc-------hhhhhheeeeEEeeecccccchhhHHHHHHhh
Q psy9141         307 STYKSRH-------INFIHRSYHLYTVDIGVHKVTESSILNLLLRG  345 (379)
Q Consensus       307 ~~~~~~~-------~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~  345 (379)
                      .+|++++       +..++.+..+|+.+.++.+    .+-|+.+.-
T Consensus       384 ~~Y~~~R~~~~~~v~~~t~~l~~l~~~~~~~~~----~~R~~~l~~  425 (437)
T TIGR01989       384 KPYERERYAKNVVLLGLVDKLHKLYATDFPPVV----ALRTFGLNL  425 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHH----HHHHHHHHH
Confidence            5677665       6667777778887777544    444555443

This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone

>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=100.00  E-value=4.4e-34  Score=281.45  Aligned_cols=332  Identities=16%  Similarity=0.138  Sum_probs=201.0

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCC----CCCCCCcccccccCHHHHHHHHHCCChHHHHhC-CCCc
Q psy9141           6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRN----SGLSEGKSINLALSVRGREALRRIGLEDKLLAH-GIPM   80 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~----~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~-~~~~   80 (379)
                      .+||+||||||+|+++|+.|+++|++|+|+|+.+....    ....+.+++  ++++++.++|+++|+|+.+.+. ..+.
T Consensus         2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~~~~~r~~--~l~~~~~~~L~~lGl~~~l~~~~~~~~   79 (405)
T PRK05714          2 RADLLIVGAGMVGSALALALQGSGLEVLLLDGGPLSVKPFDPQAPFEPRVS--ALSAASQRILERLGAWDGIAARRASPY   79 (405)
T ss_pred             CccEEEECccHHHHHHHHHHhcCCCEEEEEcCCCccccccccCCCCCccch--hhhHHHHHHHHHCChhhhhhHhhCccc
Confidence            37999999999999999999999999999999873210    011223444  6899999999999999998754 5677


Q ss_pred             eeeEEEecCCcEEEeeCCC----------CCcH-------HHHhcCCCCeEEeCceEEEEEecCCeEEEEEccCCceeEE
Q psy9141          81 RARMIHGQNGKLREIPYDP----------VHNQ-------VELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKI  143 (379)
Q Consensus        81 ~~~~~~~~~g~~~~~~~~~----------~~~~-------~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~  143 (379)
                      ..+.+++.++.. ..+|..          ...+       .......++++++++++++++.+++++++++. +|++   
T Consensus        80 ~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~-~g~~---  154 (405)
T PRK05714         80 SEMQVWDGSGTG-QIHFSAASVHAEVLGHIVENRVVQDALLERLHDSDIGLLANARLEQMRRSGDDWLLTLA-DGRQ---  154 (405)
T ss_pred             eeEEEEcCCCCc-eEEecccccCCCccEEEEEhHHHHHHHHHHHhcCCCEEEcCCEEEEEEEcCCeEEEEEC-CCCE---
Confidence            777787766532 111210          0111       11123358999999999999999999999888 8877   


Q ss_pred             EeecEEEecCCCChHHHHHh-hhcCCCCccceeeeeeeEEEeeCCCCCccccccccceeeecCCCCeEEEEEecCCC---
Q psy9141         144 TDNQLIIGADGAYSGVRKCL-MKQSMFNYSQTYIEHGYMELCIPPSEDNEVWLYKNRLLSSVPEVRKRISLRAQSLK---  219 (379)
Q Consensus       144 i~adlVV~AdG~~S~vr~~l-~~~~~~~~~~~~i~~~~~~~~~p~~~~~~~~~~p~~~~~~~p~~~~~~~~~~~~~~---  219 (379)
                      ++||+||+|||.+|.+|+.+ +......|.+..+..   ....+. +...-.     .....++.  .+.++|...+   
T Consensus       155 ~~a~~vVgAdG~~S~vR~~lg~~~~~~~~~~~~~~~---~~~~~~-~~~~~~-----~~~~~~~g--~~~~~P~~~~~~~  223 (405)
T PRK05714        155 LRAPLVVAADGANSAVRRLAGCATREWDYLHHAIVT---SVRCSE-PHRATA-----WQRFTDDG--PLAFLPLERDGDE  223 (405)
T ss_pred             EEeCEEEEecCCCchhHHhcCCCcccccCCceEEEE---EEEcCC-CCCCEE-----EEEcCCCC--CeEEeeCCCCCCC
Confidence            99999999999999999998 444444555544311   111111 000000     00011111  2333332211   


Q ss_pred             ce----eeecC-----------CCCCCChhhhcccccccccccCCcccCCCccccCCCCCccccCCcEEEe--eecccCC
Q psy9141         220 SL----MNFPR-----------ADQGGDKRDCLLHEGTSRILVPNMRLSNHLDRDQPCKPLLDFKNPIKIQ--SHAVVNE  282 (379)
Q Consensus       220 ~~----~~~p~-----------~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liG--Ah~~~~P  282 (379)
                      .+    +..+.           +.+..++.+.|...  ...+...-..........++..|. ..|++|+|  ||+| ||
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~-~~rv~LlGDAAH~~-~P  299 (405)
T PRK05714        224 HWCSIVWSTTPEEAERLMALDDDAFCAALERAFEGR--LGEVLSADPRLCVPLRQRHAKRYV-EPGLALIGDAAHTI-HP  299 (405)
T ss_pred             CeEEEEEECCHHHHHHHHCCCHHHHHHHHHHHHHHH--hCCceecCCccEEecceeehhhhc-cCCEEEEEeccccC-CC
Confidence            11    11111           11111111111111  000000000000011222345555 35899999  5555 59


Q ss_pred             CcchhhhhHHHHHHHHHHhhcc------------ccccccccc-------hhhhhheeeeEEeeecccccchhhHHHHHH
Q psy9141         283 FYKQESLIVASLCQEKIEKMFD------------NTSTYKSRH-------INFIHRSYHLYTVDIGVHKVTESSILNLLL  343 (379)
Q Consensus       283 ~~GQG~n~gl~Da~~L~~~l~~------------~~~~~~~~~-------~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~  343 (379)
                      +.|||+|+||+|+.+|+++|.+            .+..|++++       +..++.+.++|..+.+|.    ...-|+.+
T Consensus       300 ~~GQG~n~al~DA~~La~~L~~~~~~g~~~~~~~~L~~Ye~~R~~~~~~~~~~~~~~~~~~~~~~~~~----~~~R~~~l  375 (405)
T PRK05714        300 LAGQGVNLGFLDAAVLAEVLLHAAERGERLADVRVLSRFERRRMPHNLALMAAMEGFERLFQADPLPL----RWLRNTGL  375 (405)
T ss_pred             cccccccHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHH----HHHHHHHH
Confidence            9999999999999999999853            344677665       556666667888877654    46677777


Q ss_pred             hhhhccCCCChhhHHHHHHHhccc
Q psy9141         344 RGMKKNVPMPNKKLDMILESANGL  367 (379)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~  367 (379)
                      +-+.+..|+  |  +.+++.|+|+
T Consensus       376 ~~~~~~~~~--k--~~~~~~~~g~  395 (405)
T PRK05714        376 KLVDQMPEA--K--ALFVRQALGL  395 (405)
T ss_pred             HHHhhCHHH--H--HHHHHHHhcC
Confidence            766653322  2  2456778886

>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=100.00  E-value=1.9e-33  Score=277.78  Aligned_cols=335  Identities=15%  Similarity=0.162  Sum_probs=199.4

Q ss_pred             CCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeE
Q psy9141           5 SKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARM   84 (379)
Q Consensus         5 ~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~   84 (379)
                      .++||+||||||+|+++|+.|+++|++|+|+||++.....  ..|+++  ++++++.++|+++|+|+++.+.+.+.....
T Consensus        17 ~~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~--~~g~~~--~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~   92 (415)
T PRK07364         17 LTYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPAEAAA--AKGQAY--ALSLLSARIFEGIGVWEKILPQIGKFRQIR   92 (415)
T ss_pred             cccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCccccC--CCCcEE--EechHHHHHHHHCChhhhhHhhcCCccEEE
Confidence            3689999999999999999999999999999999865422  235655  689999999999999999988777777766


Q ss_pred             EEecCCcE-EEeeCC---C-----CC-cH-------HHHhcCCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeec
Q psy9141          85 IHGQNGKL-REIPYD---P-----VH-NQ-------VELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQ  147 (379)
Q Consensus        85 ~~~~~g~~-~~~~~~---~-----~~-~~-------~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~ad  147 (379)
                      +++..+.. ..+...   .     .. .+       ..+.+.+++++++++++++++.+++++++++.+++++.+ ++||
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~~v~~v~~~~~~~~v~~~~~~~~~~-i~ad  171 (415)
T PRK07364         93 LSDADYPGVVKFQPTDLGTEALGYVGEHQVLLEALQEFLQSCPNITWLCPAEVVSVEYQQDAATVTLEIEGKQQT-LQSK  171 (415)
T ss_pred             EEeCCCCceeeeccccCCCCccEEEEecHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCeeEEEEccCCcceE-Eeee
Confidence            66544321 111110   0     00 11       233445689999999999999988888888762333334 9999


Q ss_pred             EEEecCCCChHHHHHh-hhcCCCCccceeeeeeeEEEeeCC-CCCccccccccceeeecCCCCeEEEEEecCCCc--eee
Q psy9141         148 LIIGADGAYSGVRKCL-MKQSMFNYSQTYIEHGYMELCIPP-SEDNEVWLYKNRLLSSVPEVRKRISLRAQSLKS--LMN  223 (379)
Q Consensus       148 lVV~AdG~~S~vr~~l-~~~~~~~~~~~~i~~~~~~~~~p~-~~~~~~~~~p~~~~~~~p~~~~~~~~~~~~~~~--~~~  223 (379)
                      +||+|||.+|.+|+.+ .......+.+.++.     ...+. .+.....     ...+.+..  .+.++|...+.  +++
T Consensus       172 lvIgADG~~S~vR~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~-----~~~~~~~g--~~~~~p~~~~~~~~~~  239 (415)
T PRK07364        172 LVVAADGARSPIRQAAGIKTKGWKYWQSCVT-----ATVKHEAPHNDIA-----YERFWPSG--PFAILPLPGNRCQIVW  239 (415)
T ss_pred             EEEEeCCCCchhHHHhCCCceeecCCCEEEE-----EEEEccCCCCCEE-----EEEecCCC--CeEEeECCCCCEEEEE
Confidence            9999999999999988 44444444443321     11111 0000000     00111111  12222322222  111


Q ss_pred             -ecC-----------CCCCCChhhhcccc-cccccccCCcccCCCccccCCCCCccccCCcEEEe-eecccCCCcchhhh
Q psy9141         224 -FPR-----------ADQGGDKRDCLLHE-GTSRILVPNMRLSNHLDRDQPCKPLLDFKNPIKIQ-SHAVVNEFYKQESL  289 (379)
Q Consensus       224 -~p~-----------~~~~~~~~~~l~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liG-Ah~~~~P~~GQG~n  289 (379)
                       .+.           +++...+.+.+... +.... ....  .........+.+|. ..|++++| |++.++|+.|||+|
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~-~~rv~LvGDAAh~~~P~~GqG~n  315 (415)
T PRK07364        240 TAPHAQAKALLALPEAEFLAELQQRYGDQLGKLEL-LGDR--FLFPVQLMQSDRYV-QHRLALVGDAAHCCHPVGGQGLN  315 (415)
T ss_pred             ECCHHHHHHHHCCCHHHHHHHHHHHhhhhhcCcee-cCCC--ceecchhhhhhhhc-CCcEEEEecccccCCCcccccHh
Confidence             111           11111111111110 00000 0000  00011122345565 35899999 44445599999999


Q ss_pred             hHHHHHHHHHHhhcc------------ccccccccc-------hhhhhheeeeEEeeecccccchhhHHHHHHhhhhccC
Q psy9141         290 IVASLCQEKIEKMFD------------NTSTYKSRH-------INFIHRSYHLYTVDIGVHKVTESSILNLLLRGMKKNV  350 (379)
Q Consensus       290 ~gl~Da~~L~~~l~~------------~~~~~~~~~-------~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~  350 (379)
                      +||+|+..|+++|.+            .++.|++++       +..++.+.++|..+.++.    .++-|++++-+.+..
T Consensus       316 ~al~DA~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~s~~~~~~~~~~~~~~----~~~r~~~~~~~~~~~  391 (415)
T PRK07364        316 LGIRDAAALAQVLQTAHQRGEDIGSLAVLKRYERWRKRENWLILGFTDLLDRLFSNQWWPL----VVVRRLGLWLLRHVP  391 (415)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHH----HHHHHHHHHHHhhCH
Confidence            999999999999863            234566655       344555566776555433    467777777665533


Q ss_pred             CCChhhHHHHHHHhcccc
Q psy9141         351 PMPNKKLDMILESANGLG  368 (379)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~  368 (379)
                      ++.    +++...+||+.
T Consensus       392 ~~~----~~~~~~~~g~~  405 (415)
T PRK07364        392 PLK----RLALRLMTGLK  405 (415)
T ss_pred             HHH----HHHHHHHcCCC
Confidence            221    55677788864

>PRK06185 hypothetical protein; Provisional

Probab=100.00  E-value=2.8e-33  Score=275.90  Aligned_cols=337  Identities=16%  Similarity=0.135  Sum_probs=201.2

Q ss_pred             CCCCCCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhC-CCC
Q psy9141           1 MKCNSKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAH-GIP   79 (379)
Q Consensus         1 M~~m~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~-~~~   79 (379)
                      |+...++||+||||||+|+++|+.|+++|++|+|+|+.+....    +.++.  ++++.+.++|+++|+|+.+.+. ..+
T Consensus         1 ~~~~~~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~~~~~----~~r~~--~l~~~s~~~L~~lG~~~~~~~~~~~~   74 (407)
T PRK06185          1 MAEVETTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHADFLR----DFRGD--TVHPSTLELMDELGLLERFLELPHQK   74 (407)
T ss_pred             CCccccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCc----cccCc--eeChhHHHHHHHcCChhHHhhcccce
Confidence            5555679999999999999999999999999999999874422    24444  6889999999999999998764 446


Q ss_pred             ceeeEEEecCCcEEEeeCCC---------CCcH--------HHHhcCCCCeEEeCceEEEEEecCCeEE---EEEccCCc
Q psy9141          80 MRARMIHGQNGKLREIPYDP---------VHNQ--------VELEQYPDCNIYFQHKLINLDVNSGNVT---FYRTEDNS  139 (379)
Q Consensus        80 ~~~~~~~~~~g~~~~~~~~~---------~~~~--------~~~~~~~gv~i~~~~~v~~i~~~~~~v~---v~~~~~G~  139 (379)
                      +..+.++..++.....++..         ...+        +.+.+.++++++++++|++++.+++.+.   +... +|+
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~~~~~~~v~i~~~~~v~~~~~~~~~v~~v~~~~~-~g~  153 (407)
T PRK06185         75 VRTLRFEIGGRTVTLADFSRLPTPYPYIAMMPQWDFLDFLAEEASAYPNFTLRMGAEVTGLIEEGGRVTGVRARTP-DGP  153 (407)
T ss_pred             eeeEEEEECCeEEEecchhhcCCCCCcEEEeehHHHHHHHHHHHhhCCCcEEEeCCEEEEEEEeCCEEEEEEEEcC-CCc
Confidence            66676665433222222211         0111        2334457899999999999988877653   3344 554


Q ss_pred             eeEEEeecEEEecCCCChHHHHHh-hhcCCCCccceeeeeee----------EEEeeCCCCCccccccccceeeecCCCC
Q psy9141         140 ETKITDNQLIIGADGAYSGVRKCL-MKQSMFNYSQTYIEHGY----------MELCIPPSEDNEVWLYKNRLLSSVPEVR  208 (379)
Q Consensus       140 ~~~~i~adlVV~AdG~~S~vr~~l-~~~~~~~~~~~~i~~~~----------~~~~~p~~~~~~~~~~p~~~~~~~p~~~  208 (379)
                       .+ ++||+||+|||.+|.+|+.+ ++....+|.+..+....          ++.+.+   ++++++.|..       ..
T Consensus       154 -~~-i~a~~vI~AdG~~S~vr~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~~~llP~~-------~~  221 (407)
T PRK06185        154 -GE-IRADLVVGADGRHSRVRALAGLEVREFGAPMDVLWFRLPREPDDPESLMGRFGP---GQGLIMIDRG-------DY  221 (407)
T ss_pred             -EE-EEeCEEEECCCCchHHHHHcCCCccccCCCceeEEEecCCCCCCCcccceEecC---CcEEEEEcCC-------Ce
Confidence             23 99999999999999999988 55555566555331100          011111   2233333321       00


Q ss_pred             eEEEEEecC--CCceeeecCCCCCCChhhhcccc-cccccccCCcccC-C---CccccCCCCCccccCCcEEEe-eeccc
Q psy9141         209 KRISLRAQS--LKSLMNFPRADQGGDKRDCLLHE-GTSRILVPNMRLS-N---HLDRDQPCKPLLDFKNPIKIQ-SHAVV  280 (379)
Q Consensus       209 ~~~~~~~~~--~~~~~~~p~~~~~~~~~~~l~~~-g~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~liG-Ah~~~  280 (379)
                      ..++|.-..  ...+...+.+    ...+.+... .......+..... .   +......+..|+ ..|++++| |++.+
T Consensus       222 ~~i~~~~~~~~~~~~~~~~~~----~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~l~~~~~~~~~-~~rv~LvGDAAh~~  296 (407)
T PRK06185        222 WQCGYVIPKGGYAALRAAGLE----AFRERVAELAPELADRVAELKSWDDVKLLDVRVDRLRRWH-RPGLLCIGDAAHAM  296 (407)
T ss_pred             EEEEEEecCCCchhhhhhhHH----HHHHHHHHhCccHHHHHhhcCCccccEEEEEecccccccc-CCCeEEEecccccc
Confidence            111111111  0000000000    011111110 0000001111100 0   011112334455 24899999 66666


Q ss_pred             CCCcchhhhhHHHHHHHHHHhhcc----------ccccccccc-------hhhhhheeeeEEeee--cccccchhhHHHH
Q psy9141         281 NEFYKQESLIVASLCQEKIEKMFD----------NTSTYKSRH-------INFIHRSYHLYTVDI--GVHKVTESSILNL  341 (379)
Q Consensus       281 ~P~~GQG~n~gl~Da~~L~~~l~~----------~~~~~~~~~-------~~~~~~~~~~~t~~~--~~~~~~~~~~~~~  341 (379)
                      ||++|||+|+||+|+..|++.|.+          .+..|++++       +.+++.+.++|+++.  +|.+.-    -|+
T Consensus       297 ~P~~GqG~nlgl~Da~~La~~l~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----R~~  372 (407)
T PRK06185        297 SPVGGVGINLAIQDAVAAANILAEPLRRGRVSDRDLAAVQRRREFPTRVTQALQRRIQRRLLAPALAGRGPLG----PPL  372 (407)
T ss_pred             CcccccchhHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHhhhHHHHHHHHHHHHHHhhccccccCccccC----Cch
Confidence            799999999999999999998864          233576665       677888888999887  776644    456


Q ss_pred             HHhhhhccCCCChhhHHHHHHHhccccch
Q psy9141         342 LLRGMKKNVPMPNKKLDMILESANGLGVL  370 (379)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  370 (379)
                      .|.-+.+..|     |++++-.-|+.|.-
T Consensus       373 ~l~~~~~~~~-----~k~~~~~~~~~~~~  396 (407)
T PRK06185        373 LLRLLNRLPW-----LRRLPARLVGLGVR  396 (407)
T ss_pred             HHHHHHhChh-----HHHhhHHheEecCC
Confidence            6655555433     44555555666543

>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed

Probab=100.00  E-value=1.1e-32  Score=270.19  Aligned_cols=337  Identities=17%  Similarity=0.164  Sum_probs=199.3

Q ss_pred             CCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCC--CCCCCcccccccCHHHHHHHHHCCChHHHHhC-CCCce
Q psy9141           5 SKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNS--GLSEGKSINLALSVRGREALRRIGLEDKLLAH-GIPMR   81 (379)
Q Consensus         5 ~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~--~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~-~~~~~   81 (379)
                      +++||+||||||+|+++|+.|++.|++|+|||+.+.....  ..++.+..  ++++++.++|+.+|+|+.+... ..++.
T Consensus         4 ~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~~~~~~r~~--~l~~~~~~~l~~lGl~~~~~~~~~~~~~   81 (391)
T PRK08020          4 QPTDIAIVGGGMVGAALALGLAQHGFSVAVLEHAAPAPFDADSQPDVRIS--AISAASVALLKGLGVWDAVQAMRSHPYR   81 (391)
T ss_pred             ccccEEEECcCHHHHHHHHHHhcCCCEEEEEcCCCCCcccccCCCCceEE--eccHHHHHHHHHcCChhhhhhhhCcccc
Confidence            5689999999999999999999999999999998643211  11233443  6899999999999999988753 34444


Q ss_pred             eeEEEecCCcEEEee---CC-----CCCcH--------HHHhcCCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEe
Q psy9141          82 ARMIHGQNGKLREIP---YD-----PVHNQ--------VELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITD  145 (379)
Q Consensus        82 ~~~~~~~~g~~~~~~---~~-----~~~~~--------~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~  145 (379)
                      ....+...+....+.   ..     +...+        +.+.+.++++++++++|++++.+++++.+++. +|++   ++
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~-~g~~---~~  157 (391)
T PRK08020         82 RLETWEWETAHVVFDAAELKLPELGYMVENRVLQLALWQALEAHPNVTLRCPASLQALQRDDDGWELTLA-DGEE---IQ  157 (391)
T ss_pred             eEEEEeCCCCeEEecccccCCCccEEEEEcHHHHHHHHHHHHcCCCcEEEcCCeeEEEEEcCCeEEEEEC-CCCE---EE
Confidence            444433222111111   00     00111        23344569999999999999988888888888 8876   99


Q ss_pred             ecEEEecCCCChHHHHHh-hhcCCCCccceeeeeeeEEEeeCCC--------CCccccccccceeeecCCCCeEEEEEec
Q psy9141         146 NQLIIGADGAYSGVRKCL-MKQSMFNYSQTYIEHGYMELCIPPS--------EDNEVWLYKNRLLSSVPEVRKRISLRAQ  216 (379)
Q Consensus       146 adlVV~AdG~~S~vr~~l-~~~~~~~~~~~~i~~~~~~~~~p~~--------~~~~~~~~p~~~~~~~p~~~~~~~~~~~  216 (379)
                      ||+||+|||.+|.+|+.+ ++.....|.+..+.... ....++.        +.++.++.|.      ++.+..++|+..
T Consensus       158 a~~vI~AdG~~S~vR~~~~~~~~~~~y~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~p~------~~~~~~~v~~~~  230 (391)
T PRK08020        158 AKLVIGADGANSQVRQMAGIGVHGWQYRQSCMLISV-KCENPPGDSTWQQFTPSGPRAFLPL------FDNWASLVWYDS  230 (391)
T ss_pred             eCEEEEeCCCCchhHHHcCCCccccCCCceEEEEEE-EecCCCCCEEEEEEcCCCCEEEeEC------CCCcEEEEEECC
Confidence            999999999999999998 56556666665432111 1111110        0122222221      122223333321


Q ss_pred             C--CCceeeecCCCCCCChhhhcccc-cccccccCCcccCCCccccCCCCCccccCCcEEEe-eecccCCCcchhhhhHH
Q psy9141         217 S--LKSLMNFPRADQGGDKRDCLLHE-GTSRILVPNMRLSNHLDRDQPCKPLLDFKNPIKIQ-SHAVVNEFYKQESLIVA  292 (379)
Q Consensus       217 ~--~~~~~~~p~~~~~~~~~~~l~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liG-Ah~~~~P~~GQG~n~gl  292 (379)
                      .  ...+...+.+.+...+...+... +....    .....+.....++..|. ..|++|+| |++.+||+.|||+|+||
T Consensus       231 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~----~~~~~~pl~~~~~~~~~-~~rv~LvGDAAH~~~P~~GqG~n~al  305 (391)
T PRK08020        231 PARIRQLQAMSMAQLQQEIAAHFPARLGAVTP----VAAGAFPLTRRHALQYV-QPGLALVGDAAHTINPLAGQGVNLGY  305 (391)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHhhhhccceEe----ccccEeecceeehhhhc-cCcEEEEechhhccCCcccchhHHHH
Confidence            1  01111111111111111111100 00000    00000011122344555 35899999 44444599999999999


Q ss_pred             HHHHHHHHhhcc------------ccccccccc-------hhhhhheeeeEEeeecccccchhhHHHHHHhhhhccCCCC
Q psy9141         293 SLCQEKIEKMFD------------NTSTYKSRH-------INFIHRSYHLYTVDIGVHKVTESSILNLLLRGMKKNVPMP  353 (379)
Q Consensus       293 ~Da~~L~~~l~~------------~~~~~~~~~-------~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (379)
                      +|+.+|+++|.+            .+.+|++++       +..++.++++|+.+.+|.    ..+-|+.+.-+.+..+. 
T Consensus       306 ~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~~~~l~~~~~~~~~~~----~~~R~~~l~~~~~~~~~-  380 (391)
T PRK08020        306 RDVDALLDVLVNARSYGEAWASEAVLKRYQRRRMADNLLMQSGMDLFYAGFSNNLPPL----RFARNLGLMAAQRAGVL-  380 (391)
T ss_pred             HHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHH----HHHHHHHHHHHhcCHHH-
Confidence            999999999874            233477665       456666778898877643    46677777755544332 


Q ss_pred             hhhHHHHHHHhccc
Q psy9141         354 NKKLDMILESANGL  367 (379)
Q Consensus       354 ~~~~~~~~~~~~~~  367 (379)
                       |  +.++..|||+
T Consensus       381 -k--~~~~~~~~g~  391 (391)
T PRK08020        381 -K--RQALKYALGL  391 (391)
T ss_pred             -H--HHHHHHHcCC
Confidence             1  2345667764

>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated

Probab=100.00  E-value=8.5e-32  Score=274.18  Aligned_cols=310  Identities=17%  Similarity=0.182  Sum_probs=190.3

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceee
Q psy9141           4 NSKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRAR   83 (379)
Q Consensus         4 m~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~   83 (379)
                      +..+||+||||||+|+++|+.|++.|++|+||||.+.+...    ++++  .++++++++|+++|+++++.+.+.+....
T Consensus         8 ~~~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~~~~~~----~ra~--~l~~~~~~~L~~lGl~~~l~~~~~~~~~~   81 (538)
T PRK06183          8 AHDTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPTLYDL----PRAV--GIDDEALRVLQAIGLADEVLPHTTPNHGM   81 (538)
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCC----Ccee--eeCHHHHHHHHHcCChhHHHhhcccCCce
Confidence            45789999999999999999999999999999999876543    5665  68999999999999999998877777777


Q ss_pred             EEEecCCcE-EEee------CCCC----CcH--------HHHhcCCCCeEEeCceEEEEEecCCeEEEEEcc-CCceeEE
Q psy9141          84 MIHGQNGKL-REIP------YDPV----HNQ--------VELEQYPDCNIYFQHKLINLDVNSGNVTFYRTE-DNSETKI  143 (379)
Q Consensus        84 ~~~~~~g~~-~~~~------~~~~----~~~--------~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~-~G~~~~~  143 (379)
                      .+++.++.. ..++      +++.    ..+        +.+.+.++++|+++++|++++++++++++++.+ +|++.+ 
T Consensus        82 ~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~q~~le~~L~~~~~~~~gv~v~~g~~v~~i~~~~~~v~v~~~~~~G~~~~-  160 (538)
T PRK06183         82 RFLDAKGRCLAEIARPSTGEFGWPRRNAFHQPLLEAVLRAGLARFPHVRVRFGHEVTALTQDDDGVTVTLTDADGQRET-  160 (538)
T ss_pred             EEEcCCCCEEEEEcCCCCCCCCCChhccCChHHHHHHHHHHHHhCCCcEEEcCCEEEEEEEcCCeEEEEEEcCCCCEEE-
Confidence            777666543 2222      1111    112        233445799999999999999999998887752 465455 


Q ss_pred             EeecEEEecCCCChHHHHHh-hhcCCCCccceeeeeeeEEEeeCCCCCccccccccceeeecCCCCeEEEEEecCCCce-
Q psy9141         144 TDNQLIIGADGAYSGVRKCL-MKQSMFNYSQTYIEHGYMELCIPPSEDNEVWLYKNRLLSSVPEVRKRISLRAQSLKSL-  221 (379)
Q Consensus       144 i~adlVV~AdG~~S~vr~~l-~~~~~~~~~~~~i~~~~~~~~~p~~~~~~~~~~p~~~~~~~p~~~~~~~~~~~~~~~~-  221 (379)
                      ++||+||+|||.+|.+|+.+ +......+.+.++..   .........    ..+.....+.|..  .+.+.+...+.. 
T Consensus       161 i~ad~vVgADG~~S~vR~~lg~~~~~~~~~~~~~~~---~~~~~~~~~----~~~~~~~~~~~~~--~~~~~p~~~~~~r  231 (538)
T PRK06183        161 VRARYVVGCDGANSFVRRTLGVPFEDLTFPERWLVV---DVLIANDPL----GGPHTYQYCDPAR--PYTSVRLPHGRRR  231 (538)
T ss_pred             EEEEEEEecCCCchhHHHHcCCeeeCCCccceEEEE---EEecccCcc----CCCceEEEECCCC--CEEEEEcCCCeEE
Confidence            99999999999999999998 555555555544311   111111000    0011111112222  233333332221 


Q ss_pred             --eee-cCCCCCC-----ChhhhcccccccccccCCc-ccCCCccccCCCCCccccCCcEEEe-eecccCCCcchhhhhH
Q psy9141         222 --MNF-PRADQGG-----DKRDCLLHEGTSRILVPNM-RLSNHLDRDQPCKPLLDFKNPIKIQ-SHAVVNEFYKQESLIV  291 (379)
Q Consensus       222 --~~~-p~~~~~~-----~~~~~l~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~liG-Ah~~~~P~~GQG~n~g  291 (379)
                        +.+ +.+....     .+.+.+..... ......+ ....+......+..|. ..|++|+| |++.++|+.|||+|+|
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~a~~~~-~gRv~L~GDAAH~~~P~~GQG~n~g  309 (538)
T PRK06183        232 WEFMLLPGETEEQLASPENVWRLLAPWGP-TPDDAELIRHAVYTFHARVADRWR-SGRVLLAGDAAHLMPPFAGQGMNSG  309 (538)
T ss_pred             EEEEeCCCCChhhcCCHHHHHHHHHhhCC-CCcceEEEEEEeeeEccEEhhhhc-cCCEEEEechhhcCCCccccchhhh
Confidence              111 2221110     01111111000 0000000 0010111112234555 35899999 4444459999999999


Q ss_pred             HHHHHHHHHhhcc---------ccccccccc-------hhhhhheeeeEEeeeccc
Q psy9141         292 ASLCQEKIEKMFD---------NTSTYKSRH-------INFIHRSYHLYTVDIGVH  331 (379)
Q Consensus       292 l~Da~~L~~~l~~---------~~~~~~~~~-------~~~~~~~~~~~t~~~~~~  331 (379)
                      ++||.+|+++|..         .+.+|++++       +..++.+.++|+...+..
T Consensus       310 i~DA~~La~kLa~~~~g~~~~~~L~~Ye~eR~p~~~~~~~~s~~~~~~~~~~~~~~  365 (538)
T PRK06183        310 IRDAANLAWKLAAVLRGRAGDALLDTYEQERRPHARAMIDLAVRLGRVICPTDRLA  365 (538)
T ss_pred             HHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCHHH
Confidence            9999999998863         445688776       445555555776655543

>KOG2614|consensus

Probab=100.00  E-value=7e-32  Score=253.48  Aligned_cols=285  Identities=29%  Similarity=0.404  Sum_probs=190.6

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeEE-
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARMI-   85 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~~-   85 (379)
                      .+|+|||||++||++|++|+|.|++|+|+|++..++..    |++|+++++  ++++|+.+|+-+.+.+.+.|+.+..+ 
T Consensus         3 ~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~~R~~----g~si~L~~n--g~~aLkai~~~e~i~~~gip~~~~v~~   76 (420)
T KOG2614|consen    3 PKVVIVGGGIVGLATALALHRKGIDVVVLESREDPRGE----GTSINLALN--GWRALKAIGLKEQIREQGIPLGGRVLI   76 (420)
T ss_pred             CcEEEECCcHHHHHHHHHHHHcCCeEEEEeeccccccC----Ccceeehhh--HHHHHHHcccHHHHHHhcCcccceeee
Confidence            48999999999999999999999999999998887765    888865544  99999999999999999999987744 


Q ss_pred             EecCCc-EEEeeCCCCC------cH------HHHhcCCCCeEEeCc------eEEEEEecCCeEEEEEccCCceeEEEee
Q psy9141          86 HGQNGK-LREIPYDPVH------NQ------VELEQYPDCNIYFQH------KLINLDVNSGNVTFYRTEDNSETKITDN  146 (379)
Q Consensus        86 ~~~~g~-~~~~~~~~~~------~~------~~~~~~~gv~i~~~~------~v~~i~~~~~~v~v~~~~~G~~~~~i~a  146 (379)
                      +...|+ ...++|....      .+      ....+.+--.|+++.      ....++..+....+.+. +|.+   +++
T Consensus        77 ~~~sg~~~~~~~~~~~~~~i~r~~~r~ll~~lL~~a~~~~~ikf~~~~~~~~~~~~~~~~~~~~~v~l~-~g~~---~~~  152 (420)
T KOG2614|consen   77 HGDSGKEVSRILYGEPDEYILRINRRNLLQELLAEALPTGTIKFHSNLSCTSKDVEIETLGKKLVVHLS-DGTT---VKG  152 (420)
T ss_pred             ecCCCCeeEecccCCchHHHHHHHHHHHHHHHHHhhcCCCeeecccccccccccceeeecccccceecC-CCcE---EEe
Confidence            444555 3566665542      11      122233444455553      44445555556677888 8888   999


Q ss_pred             cEEEecCCCChHHHHHhhhc-CCCCccceeeeeeeEEEeeCCCCCccccccccceeeecCCCCeEEEEEecC--CCceee
Q psy9141         147 QLIIGADGAYSGVRKCLMKQ-SMFNYSQTYIEHGYMELCIPPSEDNEVWLYKNRLLSSVPEVRKRISLRAQS--LKSLMN  223 (379)
Q Consensus       147 dlVV~AdG~~S~vr~~l~~~-~~~~~~~~~i~~~~~~~~~p~~~~~~~~~~p~~~~~~~p~~~~~~~~~~~~--~~~~~~  223 (379)
                      |++|||||++|.||+++... +..++.+.+.+++|.+...|. ..+.+++.++.++.|+... ...+++...  .-....
T Consensus       153 dlligCDGa~S~Vr~~l~~~~p~~~~~~ayrg~~~~~~~~~~-~~~vf~~~~~~~~~~~~~~-~~~~~y~~~~k~~t~t~  230 (420)
T KOG2614|consen  153 DLLIGCDGAYSKVRKWLGFKEPRYDGSQAYRGLGFIPNGIPF-GKKVFAIYGNGLHSWPRPG-FHLIAYWFLDKSLTSTD  230 (420)
T ss_pred             eEEEEcCchHHHHHHHhcccCCcceeEEEEeeeeeccCCCCc-ccceecccCCeEEEcccCC-ceEEEEEeecCCccccc
Confidence            99999999999999999544 777777877777777665554 4577889999998886443 233333322  222223


Q ss_pred             ecCCCCCCChhhh------cccccccccccCCcccC---CCccccCCCCCccccC----CcEEEe--eecccCCCcchhh
Q psy9141         224 FPRADQGGDKRDC------LLHEGTSRILVPNMRLS---NHLDRDQPCKPLLDFK----NPIKIQ--SHAVVNEFYKQES  288 (379)
Q Consensus       224 ~p~~~~~~~~~~~------l~~~g~~~~~~~~~~~~---~~~~~~~~~~~~~~~~----~~~liG--Ah~~~~P~~GQG~  288 (379)
                      ++.....+.....      +..+ .+..+...+...   .......+..+.+..+    |++|+|  ||+|. |++|||+
T Consensus       231 ~~~~~e~~~l~~~~~~v~~~~~e-n~~d~i~~~~~e~i~~t~l~~r~p~~~i~~~~s~~~vvL~GDAaHaM~-Pf~GQG~  308 (420)
T KOG2614|consen  231 FAPFDEPEKLKKTSLEVVDFFPE-NFPDIIELTGEESIVRTPLADRPPWPLISVKCSPGNVVLLGDAAHAMT-PFLGQGG  308 (420)
T ss_pred             ccCcCCHHHHhhhHHHHHHHhHH-hHHHHHHhcChHHhhhchhhhcCCcCeeeeccCCCeEEEecccccccC-Ccccccc
Confidence            3322222221111      0000 010111111111   0012223334444332    799999  99999 9999999


Q ss_pred             hhHHHHHHHHHHhhccc
Q psy9141         289 LIVASLCQEKIEKMFDN  305 (379)
Q Consensus       289 n~gl~Da~~L~~~l~~~  305 (379)
                      |.|+|||..|+++|.+.
T Consensus       309 n~a~ED~~VLa~~L~~~  325 (420)
T KOG2614|consen  309 NCAFEDCVVLAECLDEA  325 (420)
T ss_pred             cchHHHHHHHHHHHHHh
Confidence            99999999999999873

>PRK07588 hypothetical protein; Provisional

Probab=99.98  E-value=1.7e-31  Score=261.95  Aligned_cols=317  Identities=14%  Similarity=0.146  Sum_probs=187.0

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeEEEe
Q psy9141           8 SVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARMIHG   87 (379)
Q Consensus         8 dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~   87 (379)
                      ||+||||||+|+++|+.|+++|++|+|+||.+.....    |+++  ++++++.++|+++|+++++.+.+.++..+.+++
T Consensus         2 ~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~----g~~~--~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~   75 (391)
T PRK07588          2 KVAISGAGIAGPTLAYWLRRYGHEPTLIERAPELRTG----GYMV--DFWGVGYEVAKRMGITDQLREAGYQIEHVRSVD   75 (391)
T ss_pred             eEEEECccHHHHHHHHHHHHCCCceEEEeCCCCccCC----CeEE--eccCcHHHHHHHcCCHHHHHhccCCccceEEEc
Confidence            7999999999999999999999999999999765432    5554  678999999999999999988888888888887


Q ss_pred             cCCcE-EEee-------CCCC---CcH----HH-H-hcCCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEEE
Q psy9141          88 QNGKL-REIP-------YDPV---HNQ----VE-L-EQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLII  150 (379)
Q Consensus        88 ~~g~~-~~~~-------~~~~---~~~----~~-~-~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlVV  150 (379)
                      .+|.. ..++       ++..   ..+    .. . +...+++++++++|++++.++++++++++ +|++   +++|+||
T Consensus        76 ~~g~~~~~~~~~~~~~~~g~~~~~i~r~~l~~~L~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~-~g~~---~~~d~vI  151 (391)
T PRK07588         76 PTGRRKADLNVDSFRRMVGDDFTSLPRGDLAAAIYTAIDGQVETIFDDSIATIDEHRDGVRVTFE-RGTP---RDFDLVI  151 (391)
T ss_pred             CCCCEEEEecHHHccccCCCceEEEEHHHHHHHHHHhhhcCeEEEeCCEEeEEEECCCeEEEEEC-CCCE---EEeCEEE
Confidence            66653 2222       1101   111    11 1 12346999999999999999999999998 9987   8999999


Q ss_pred             ecCCCChHHHHHhhhcCCCCccceeeeeeeEEEeeCCCCCccccccccceeeecCCCCeEEEEEecCCCcee-ee--cCC
Q psy9141         151 GADGAYSGVRKCLMKQSMFNYSQTYIEHGYMELCIPPSEDNEVWLYKNRLLSSVPEVRKRISLRAQSLKSLM-NF--PRA  227 (379)
Q Consensus       151 ~AdG~~S~vr~~l~~~~~~~~~~~~i~~~~~~~~~p~~~~~~~~~~p~~~~~~~p~~~~~~~~~~~~~~~~~-~~--p~~  227 (379)
                      +|||.+|.+|+.+.+... .+ ..+..........+..  .+  ..+.....+.... ..+.++|...+..+ .+  +.+
T Consensus       152 gADG~~S~vR~~~~~~~~-~~-~~~~g~~~~~~~~~~~--~~--~~~~~~~~~~~~g-~~~~~~p~~~~~~~~~~~~~~~  224 (391)
T PRK07588        152 GADGLHSHVRRLVFGPER-DF-EHYLGCKVAACVVDGY--RP--RDERTYVLYNEVG-RQVARVALRGDRTLFLFIFRAE  224 (391)
T ss_pred             ECCCCCccchhhccCCcc-ce-EEEcCcEEEEEEcCCC--CC--CCCceEEEEeCCC-CEEEEEecCCCCeEEEEEEEcC
Confidence            999999999998632211 10 0111111111111100  00  0011111111111 23444444333321 11  111


Q ss_pred             -CCCCC--------hhhhccccccc-ccccCCcccCCC----ccccCCCCCccccCCcEEEe--eecccCCCcchhhhhH
Q psy9141         228 -DQGGD--------KRDCLLHEGTS-RILVPNMRLSNH----LDRDQPCKPLLDFKNPIKIQ--SHAVVNEFYKQESLIV  291 (379)
Q Consensus       228 -~~~~~--------~~~~l~~~g~~-~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~liG--Ah~~~~P~~GQG~n~g  291 (379)
                       .....        +.+.+...++. ..+...+.....    .....++..|. ..+++++|  ||+|. |+.|||+|+|
T Consensus       225 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~-~grv~LiGDAAH~~~-P~~GqG~n~a  302 (391)
T PRK07588        225 HDNPPLTPAEEKQLLRDQFGDVGWETPDILAALDDVEDLYFDVVSQIRMDRWS-RGRVALVGDAAACPS-LLGGEGSGLA  302 (391)
T ss_pred             CccccCCHHHHHHHHHHHhccCCccHHHHHHhhhcccchheeeeeeeccCccc-cCCEEEEEccccCCC-CccCCcHHHH
Confidence             11010        11111111110 000011110000    01112345565 45899999  55555 9999999999


Q ss_pred             HHHHHHHHHhhcc-------ccccccccchhh-------hhheeeeEEeeecccccchhhHHHHHHhhhh
Q psy9141         292 ASLCQEKIEKMFD-------NTSTYKSRHINF-------IHRSYHLYTVDIGVHKVTESSILNLLLRGMK  347 (379)
Q Consensus       292 l~Da~~L~~~l~~-------~~~~~~~~~~~~-------~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~  347 (379)
                      |+|+..|+++|.+       .+..|++.+...       ++.+..+|....++.    ..+-|++++.+.
T Consensus       303 ieDa~~La~~L~~~~~~~~~al~~Y~~~R~~~~~~~~~~~~~~~~~~~~~~~~~----~~~R~~~~~~~~  368 (391)
T PRK07588        303 ITEAYVLAGELARAGGDHRRAFDAYEKRLRPFIAGKQAAAAKFLSVFAPKTRFG----LYVRNIAMKIMN  368 (391)
T ss_pred             HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCHHH----HHHHHHHHHHhc
Confidence            9999999999864       244577776333       333444665544432    245566666555

>PRK06834 hypothetical protein; Provisional

Probab=99.98  E-value=3.8e-31  Score=265.54  Aligned_cols=293  Identities=19%  Similarity=0.153  Sum_probs=171.5

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceee
Q psy9141           4 NSKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRAR   83 (379)
Q Consensus         4 m~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~   83 (379)
                      |.++||+||||||+|+++|+.|+++|++|+||||.+.+...   ..++.  +++++++++|+++|+++++.+.+......
T Consensus         1 ~~~~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~~~~~~---~~Ra~--~l~~~s~~~L~~lGl~~~l~~~~~~~~~~   75 (488)
T PRK06834          1 MTEHAVVIAGGGPTGLMLAGELALAGVDVAIVERRPNQELV---GSRAG--GLHARTLEVLDQRGIADRFLAQGQVAQVT   75 (488)
T ss_pred             CCcceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCC---Cccee--eECHHHHHHHHHcCcHHHHHhcCCccccc
Confidence            34689999999999999999999999999999999865321   13443  68999999999999999998765443211


Q ss_pred             EEE----ecCCcEEEeeCCCCCcH-------HHHhcCCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEEEec
Q psy9141          84 MIH----GQNGKLREIPYDPVHNQ-------VELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGA  152 (379)
Q Consensus        84 ~~~----~~~g~~~~~~~~~~~~~-------~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlVV~A  152 (379)
                      .+.    +........++.....|       ....+..+++++++++|++++++++++++++. +|++   ++||+||+|
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~v~~~~~~v~v~~~-~g~~---i~a~~vVgA  151 (488)
T PRK06834         76 GFAATRLDISDFPTRHNYGLALWQNHIERILAEWVGELGVPIYRGREVTGFAQDDTGVDVELS-DGRT---LRAQYLVGC  151 (488)
T ss_pred             eeeeEecccccCCCCCCccccccHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCeEEEEEC-CCCE---EEeCEEEEe
Confidence            110    10000011122222222       12223358999999999999999999999887 8876   999999999


Q ss_pred             CCCChHHHHHh-hhcCCCCccceeeeeeeEEEeeCCCCCccccccccceeeecC---CCCeEEEEEecCCCceeeecCCC
Q psy9141         153 DGAYSGVRKCL-MKQSMFNYSQTYIEHGYMELCIPPSEDNEVWLYKNRLLSSVP---EVRKRISLRAQSLKSLMNFPRAD  228 (379)
Q Consensus       153 dG~~S~vr~~l-~~~~~~~~~~~~i~~~~~~~~~p~~~~~~~~~~p~~~~~~~p---~~~~~~~~~~~~~~~~~~~p~~~  228 (379)
                      ||++|.+|+.+ +.+++.+|.+.++.   .++..+..+.......+.......|   +....+++.... ..   ...+.
T Consensus       152 DG~~S~vR~~lgi~~~g~~~~~~~~~---~dv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~  224 (488)
T PRK06834        152 DGGRSLVRKAAGIDFPGWDPTTSYLI---AEVEMTEEPEWGVHRDALGIHAFGRLEDEGPVRVMVTEKQ-VG---ATGEP  224 (488)
T ss_pred             cCCCCCcHhhcCCCCCCCCcceEEEE---EEEEecCCCCcceeeCCCceEEEeccCCCCeEEEEEecCC-CC---CCCCC
Confidence            99999999998 67777777665441   2222221000001111111111111   111112221100 00   00000


Q ss_pred             CCCChhhhcccc-cc-cccccCCcccCCCccccCCCCCccccCCcEEEe-eecccCCCcchhhhhHHHHHHHHHHhhcc-
Q psy9141         229 QGGDKRDCLLHE-GT-SRILVPNMRLSNHLDRDQPCKPLLDFKNPIKIQ-SHAVVNEFYKQESLIVASLCQEKIEKMFD-  304 (379)
Q Consensus       229 ~~~~~~~~l~~~-g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liG-Ah~~~~P~~GQG~n~gl~Da~~L~~~l~~-  304 (379)
                      ..++..+.+... +. ....... ....+......+..|. ..|++|+| |+++++|+.|||||+||+||.+|+++|.. 
T Consensus       225 ~~~~~~~~l~~~~g~~~~~~~~~-~~~~~~~~~r~a~~~~-~gRV~LaGDAAH~~~P~gGQG~N~gi~DA~nLawkLa~v  302 (488)
T PRK06834        225 TLDDLREALIAVYGTDYGIHSPT-WISRFTDMARQAASYR-DGRVLLAGDAAHVHSPVGGQGLNTGVQDAVNLGWKLAQV  302 (488)
T ss_pred             CHHHHHHHHHHhhCCCCccccce-eEEeccccceeccccc-CCcEEEEeeccccCCccccccccccHHHHHHHHHHHHHH
Confidence            001111111111 00 0000000 0010111223345555 35899999 55555699999999999999999888865 


Q ss_pred             --------ccccccccch
Q psy9141         305 --------NTSTYKSRHI  314 (379)
Q Consensus       305 --------~~~~~~~~~~  314 (379)
                              .|.+|++++.
T Consensus       303 l~g~~~~~lLd~Ye~eRr  320 (488)
T PRK06834        303 VKGTSPESLLDTYHAERH  320 (488)
T ss_pred             HcCCCcHHHHHHHHHHHH
Confidence                    4446887763

>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=99.98  E-value=1.6e-31  Score=262.88  Aligned_cols=332  Identities=15%  Similarity=0.129  Sum_probs=198.2

Q ss_pred             CcEEEECCChHHHHHHHHHHhCC--CcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeE
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKNQ--YEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARM   84 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~G--~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~   84 (379)
                      +||+||||||+|+++|+.|+++|  ++|+|+||.+....  ..+++++  ++++++.++|+++|+|+.+...+.+.....
T Consensus         2 ~dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~~~~~--~~~~~~~--~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~   77 (403)
T PRK07333          2 CDVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAPAGAW--SRDPRAS--AIAAAARRMLEALGVWDEIAPEAQPITDMV   77 (403)
T ss_pred             CCEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCCcccC--CCCcceE--EecHHHHHHHHHCCChhhhhhhcCcccEEE
Confidence            79999999999999999999995  99999999975432  2346665  789999999999999999988888887777


Q ss_pred             EEecCCcE----EEeeC------CC----CCcH-------HHHhcCCCCeEEeCceEEEEEecCCeEEEEEccCCceeEE
Q psy9141          85 IHGQNGKL----REIPY------DP----VHNQ-------VELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKI  143 (379)
Q Consensus        85 ~~~~~g~~----~~~~~------~~----~~~~-------~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~  143 (379)
                      +++..+..    ....+      ..    ...+       .......+++++++++|++++.+++.+.+++. +|++   
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~-~g~~---  153 (403)
T PRK07333         78 ITDSRTSDPVRPVFLTFEGEVEPGEPFAHMVENRVLINALRKRAEALGIDLREATSVTDFETRDEGVTVTLS-DGSV---  153 (403)
T ss_pred             EEeCCCCCCCccceEEecccccCCCccEEEeEhHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCEEEEEEC-CCCE---
Confidence            76643211    01111      11    1111       12223358999999999999998999999888 8877   


Q ss_pred             EeecEEEecCCCChHHHHHh-hhcCCCCccceeeeeeeEEEeeCCCCCccccccccceeeecCCCCeEEEEEecCCCce-
Q psy9141         144 TDNQLIIGADGAYSGVRKCL-MKQSMFNYSQTYIEHGYMELCIPPSEDNEVWLYKNRLLSSVPEVRKRISLRAQSLKSL-  221 (379)
Q Consensus       144 i~adlVV~AdG~~S~vr~~l-~~~~~~~~~~~~i~~~~~~~~~p~~~~~~~~~~p~~~~~~~p~~~~~~~~~~~~~~~~-  221 (379)
                      ++||+||+|||.+|.+|+.+ +......|.+..+... .+...+.  ....      ...+.++.  .+.+.|...+.. 
T Consensus       154 ~~ad~vI~AdG~~S~vr~~~g~~~~~~~~~~~~~~~~-~~~~~~~--~~~~------~~~~~~~g--~~~~~Pl~~~~~~  222 (403)
T PRK07333        154 LEARLLVAADGARSKLRELAGIKTVGWDYGQSGIVCT-VEHERPH--GGRA------EEHFLPAG--PFAILPLKGNRSS  222 (403)
T ss_pred             EEeCEEEEcCCCChHHHHHcCCCcccccCCCEEEEEE-EEcCCCC--CCEE------EEEeCCCC--ceEEeECCCCCeE
Confidence            99999999999999999988 4444455555543111 1111110  0000      00111222  122223322221 


Q ss_pred             eee--cCC-----------CCCCChhhhcccccccccccCCcccCCCccccCCCCCccccCCcEEEe-eecccCCCcchh
Q psy9141         222 MNF--PRA-----------DQGGDKRDCLLHEGTSRILVPNMRLSNHLDRDQPCKPLLDFKNPIKIQ-SHAVVNEFYKQE  287 (379)
Q Consensus       222 ~~~--p~~-----------~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liG-Ah~~~~P~~GQG  287 (379)
                      +.+  +.+           .+...+.+.+...  ...+...-..........+...|. ..|++++| |++.++|+.|||
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~grv~LvGDAAH~~~P~~GqG  299 (403)
T PRK07333        223 LVWTERTADAERLVALDDLVFEAELEQRFGHR--LGELKVLGKRRAFPLGLTLARSFV-APRFALVGDAAHGIHPIAGQG  299 (403)
T ss_pred             EEEECCHHHHHHHHCCCHHHHHHHHHHHhhhh--cCceEeccCccEeechhhhhhhcc-CCCEEEEechhhcCCCccccc
Confidence            111  100           0000111111110  000000000000011112334455 35899999 444556999999


Q ss_pred             hhhHHHHHHHHHHhhcc------------ccccccccc-------hhhhhheeeeEEeeecccccchhhHHHHHHhhhhc
Q psy9141         288 SLIVASLCQEKIEKMFD------------NTSTYKSRH-------INFIHRSYHLYTVDIGVHKVTESSILNLLLRGMKK  348 (379)
Q Consensus       288 ~n~gl~Da~~L~~~l~~------------~~~~~~~~~-------~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~  348 (379)
                      +|+||+|+..|+++|.+            .++.|++++       +..++.+.++|..+.++.+    ..-|++++-+.+
T Consensus       300 ~n~ai~Da~~La~~L~~~~~~~~~~~~~~~L~~Ye~~R~~~~~~~~~~~~~~~~~~~~~~~~~~----~~r~~~~~~~~~  375 (403)
T PRK07333        300 LNLGLKDVAALAEVVVEAARLGLDIGSLDVLERYQRWRRFDTVRMGVTTDVLNRLFSNDSTLLR----SVRDIGLGLVDR  375 (403)
T ss_pred             hhhhHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCCchHHH----HHHHHHHHHHhc
Confidence            99999999999999863            234577654       3344555557766655443    455666666654


Q ss_pred             cCCCChhhHHHHHHHhcccc
Q psy9141         349 NVPMPNKKLDMILESANGLG  368 (379)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~  368 (379)
                      ..++    -+.+.+.++|++
T Consensus       376 ~~~~----~~~~~~~~~g~~  391 (403)
T PRK07333        376 LPKL----KSFFIRQAAGLT  391 (403)
T ss_pred             CHHH----HHHHHHHHhCcC
Confidence            3222    235678888875

>PRK05868 hypothetical protein; Validated

Probab=99.97  E-value=2.3e-30  Score=252.02  Aligned_cols=273  Identities=15%  Similarity=0.149  Sum_probs=173.0

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeEEEe
Q psy9141           8 SVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARMIHG   87 (379)
Q Consensus         8 dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~   87 (379)
                      ||+||||||+|+++|+.|+++|++|+|||+.+.....    |.++  .+.++++++|+++|+++.+.+.+.++....+++
T Consensus         3 ~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~~~~~----g~~i--~~~~~a~~~L~~lGl~~~~~~~~~~~~~~~~~~   76 (372)
T PRK05868          3 TVVVSGASVAGTAAAYWLGRHGYSVTMVERHPGLRPG----GQAI--DVRGPALDVLERMGLLAAAQEHKTRIRGASFVD   76 (372)
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCC----ceee--eeCchHHHHHHhcCCHHHHHhhccCccceEEEe
Confidence            8999999999999999999999999999999876544    6665  578999999999999999987777888887877


Q ss_pred             cCCcEEEee-----CCCCC-------cH----HHH--hcCCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEE
Q psy9141          88 QNGKLREIP-----YDPVH-------NQ----VEL--EQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLI  149 (379)
Q Consensus        88 ~~g~~~~~~-----~~~~~-------~~----~~~--~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlV  149 (379)
                      .+|......     +....       .+    ..+  +...+++++++++|++++.++++++++++ +|++   ++||+|
T Consensus        77 ~~g~~~~~~~~~~~~~~~~~~~~~~i~R~~L~~~l~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~-dg~~---~~adlv  152 (372)
T PRK05868         77 RDGNELFRDTESTPTGGPVNSPDIELLRDDLVELLYGATQPSVEYLFDDSISTLQDDGDSVRVTFE-RAAA---REFDLV  152 (372)
T ss_pred             CCCCEEeecccccccCCCCCCceEEEEHHHHHHHHHHhccCCcEEEeCCEEEEEEecCCeEEEEEC-CCCe---EEeCEE
Confidence            666542211     11110       01    111  22468999999999999988889999999 9987   999999


Q ss_pred             EecCCCChHHHHHhhhcCCC---CccceeeeeeeEEEeeCCCCCccccccccceeee-cCCCCeEEEEEecCCCc----e
Q psy9141         150 IGADGAYSGVRKCLMKQSMF---NYSQTYIEHGYMELCIPPSEDNEVWLYKNRLLSS-VPEVRKRISLRAQSLKS----L  221 (379)
Q Consensus       150 V~AdG~~S~vr~~l~~~~~~---~~~~~~i~~~~~~~~~p~~~~~~~~~~p~~~~~~-~p~~~~~~~~~~~~~~~----~  221 (379)
                      |+|||.+|.+|+.+.+....   .++...     ..+..|..      ..+.....| +... ..+.+++...+.    +
T Consensus       153 IgADG~~S~vR~~~~~~~~~~~~~~g~~~-----~~~~~~~~------~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~  220 (372)
T PRK05868        153 IGADGLHSNVRRLVFGPEEQFVKRLGTHA-----AIFTVPNF------LELDYWQTWHYGDS-TMAGVYSARNNTEARAA  220 (372)
T ss_pred             EECCCCCchHHHHhcCCcccceeecceEE-----EEEEcCCC------CCCCcceEEEecCC-cEEEEEecCCCCceEEE
Confidence            99999999999998432211   111111     11112210      001112222 1222 234455544322    1


Q ss_pred             eeecCCCC----------CCChhhhccccccc-ccccCCcccCC---C-ccccCCCCCccccCCcEEEe--eecccCCCc
Q psy9141         222 MNFPRADQ----------GGDKRDCLLHEGTS-RILVPNMRLSN---H-LDRDQPCKPLLDFKNPIKIQ--SHAVVNEFY  284 (379)
Q Consensus       222 ~~~p~~~~----------~~~~~~~l~~~g~~-~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~liG--Ah~~~~P~~  284 (379)
                      +.+...+.          .+.+.+.|...+|. ..+...+....   + .....++..|+ ..|++|+|  ||++. |+.
T Consensus       221 ~~~~~~~~~~~~~~~~~~~~~l~~~f~~~~w~~~~l~~~~~~~~~~~~~~~~~~~~~~w~-~grv~LvGDAAH~~~-P~~  298 (372)
T PRK05868        221 LAFMDTELRIDYRDTEAQFAELQRRMAEDGWVRAQLLHYMRSAPDFYFDEMSQILMDRWS-RGRVALVGDAGYCCS-PLS  298 (372)
T ss_pred             EEEecCCcccccCChHHHHHHHHHHHhhCCCchHHHHhhcccCCceeeccceEEecCCCC-CCCeeeeecccccCC-Ccc
Confidence            22222110          01111222211222 11111111000   0 11223455676 45899999  77776 999


Q ss_pred             chhhhhHHHHHHHHHHhhcc
Q psy9141         285 KQESLIVASLCQEKIEKMFD  304 (379)
Q Consensus       285 GQG~n~gl~Da~~L~~~l~~  304 (379)
                      |||+|+||+||..|+++|..
T Consensus       299 GqGa~~AleDa~~La~~L~~  318 (372)
T PRK05868        299 GQGTSVALLGAYILAGELKA  318 (372)
T ss_pred             CccHHHHHHHHHHHHHHHHh
Confidence            99999999999999999964

>PRK06184 hypothetical protein; Provisional

Probab=99.97  E-value=1.9e-30  Score=262.31  Aligned_cols=290  Identities=17%  Similarity=0.143  Sum_probs=175.4

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceee
Q psy9141           4 NSKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRAR   83 (379)
Q Consensus         4 m~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~   83 (379)
                      |+++||+||||||+||++|+.|+++|++|+||||.+.+...    ++++  .++++++++|+++|+++++.+.+.+....
T Consensus         1 ~~~~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~~~~~~----~ra~--~l~~~~~e~l~~lGl~~~l~~~~~~~~~~   74 (502)
T PRK06184          1 YTTTDVLIVGAGPTGLTLAIELARRGVSFRLIEKAPEPFPG----SRGK--GIQPRTQEVFDDLGVLDRVVAAGGLYPPM   74 (502)
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCcC----ccce--eecHHHHHHHHHcCcHHHHHhcCccccce
Confidence            45689999999999999999999999999999999866543    4554  57899999999999999998887777666


Q ss_pred             EEEecCCcEEEee------------CC--CCCcH--------HHHhcCCCCeEEeCceEEEEEecCCeEEEEEc--cCCc
Q psy9141          84 MIHGQNGKLREIP------------YD--PVHNQ--------VELEQYPDCNIYFQHKLINLDVNSGNVTFYRT--EDNS  139 (379)
Q Consensus        84 ~~~~~~g~~~~~~------------~~--~~~~~--------~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~--~~G~  139 (379)
                      .++..++......            +.  ....|        +.+.+ .++++++++++++++++++++++++.  .+++
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~-~gv~i~~~~~v~~i~~~~~~v~v~~~~~~~~~  153 (502)
T PRK06184         75 RIYRDDGSVAESDMFAHLEPTPDEPYPLPLMVPQWRTERILRERLAE-LGHRVEFGCELVGFEQDADGVTARVAGPAGEE  153 (502)
T ss_pred             eEEeCCceEEEeeccccccCCCCCCCCcceecCHHHHHHHHHHHHHH-CCCEEEeCcEEEEEEEcCCcEEEEEEeCCCeE
Confidence            6665444321111            11  11122        22333 48999999999999999888887762  1444


Q ss_pred             eeEEEeecEEEecCCCChHHHHHh-hhcCCCCccc-eeeeeeeEEEeeCCCCCccccccccceeeecCCCCeEEEEEecC
Q psy9141         140 ETKITDNQLIIGADGAYSGVRKCL-MKQSMFNYSQ-TYIEHGYMELCIPPSEDNEVWLYKNRLLSSVPEVRKRISLRAQS  217 (379)
Q Consensus       140 ~~~~i~adlVV~AdG~~S~vr~~l-~~~~~~~~~~-~~i~~~~~~~~~p~~~~~~~~~~p~~~~~~~p~~~~~~~~~~~~  217 (379)
                      +   ++||+||+|||++|.+|+++ +...+..+.+ .++.   .+...+..       .+...+.+.+.....+.+.|..
T Consensus       154 ~---i~a~~vVgADG~~S~vR~~lgi~~~g~~~~~~~~~~---~~~~~~~~-------~~~~~~~~~~~~~~~~~~~p~~  220 (502)
T PRK06184        154 T---VRARYLVGADGGRSFVRKALGIGFPGETLGIDRMLV---ADVSLTGL-------DRDAWHQWPDGDMGMIALCPLP  220 (502)
T ss_pred             E---EEeCEEEECCCCchHHHHhCCCCcccCcCCCceEEE---EEEEeecC-------CCcceEEccCCCCcEEEEEEcc
Confidence            4   99999999999999999998 6666555544 3321   12211110       0111122222111234444443


Q ss_pred             CCceeee----cCCCCCCChhhhccc----c-cccccccCCcc-cCCCccccCCCCCccccCCcEEEe-eecccCCCcch
Q psy9141         218 LKSLMNF----PRADQGGDKRDCLLH----E-GTSRILVPNMR-LSNHLDRDQPCKPLLDFKNPIKIQ-SHAVVNEFYKQ  286 (379)
Q Consensus       218 ~~~~~~~----p~~~~~~~~~~~l~~----~-g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~liG-Ah~~~~P~~GQ  286 (379)
                      .+..+.+    +.+.......+.+.+    . +.......... ...+......+..|. ..|+.|+| |++.++|+.||
T Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~-~gRv~L~GDAAH~~~P~~Gq  299 (502)
T PRK06184        221 GTDLFQIQAPLPPGGEPDLSADGLTALLAERTGRTDIRLHSVTWASAFRMNARLADRYR-VGRVFLAGDAAHVHPPAGGQ  299 (502)
T ss_pred             CCCeEEEEEEcCCCccCCCCHHHHHHHHHHhcCCCCcceeeeeeeeccccceeEhhhhc-CCcEEEeccccccCCCcccc
Confidence            2322221    211111111111111    1 11000000000 000011112223444 35899999 44444599999


Q ss_pred             hhhhHHHHHHHHHHhhcc--------ccccccccch
Q psy9141         287 ESLIVASLCQEKIEKMFD--------NTSTYKSRHI  314 (379)
Q Consensus       287 G~n~gl~Da~~L~~~l~~--------~~~~~~~~~~  314 (379)
                      |||+||+||.+|+++|..        .+.+|++++.
T Consensus       300 G~n~gi~DA~~LawkLa~vl~g~~~~lL~~Ye~eR~  335 (502)
T PRK06184        300 GLNTSVQDAYNLGWKLAAVLAGAPEALLDTYEEERR  335 (502)
T ss_pred             cccchHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            999999999999998863        4556777763

>PRK06475 salicylate hydroxylase; Provisional

Probab=99.97  E-value=3.2e-30  Score=253.57  Aligned_cols=297  Identities=14%  Similarity=0.148  Sum_probs=174.3

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeEEE
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARMIH   86 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~   86 (379)
                      -+|+||||||+||++|+.|+++|++|+|+||.+.....    |+++  .++++++++|+++|+++++...+.......+.
T Consensus         3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~~~~~----g~gi--~l~~~~~~~L~~~Gl~~~l~~~~~~~~~~~~~   76 (400)
T PRK06475          3 GSPLIAGAGVAGLSAALELAARGWAVTIIEKAQELSEV----GAGL--QLAPNAMRHLERLGVADRLSGTGVTPKALYLM   76 (400)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCcC----Cccc--eeChhHHHHHHHCCChHHHhhcccCcceEEEe
Confidence            58999999999999999999999999999999866543    7776  68999999999999999998766555444444


Q ss_pred             ecCC-cE-EEee--------CCCC---CcH--------HHHhcCCCCeEEeCceEEEEEecCCeEEEEEc--cCCceeEE
Q psy9141          87 GQNG-KL-REIP--------YDPV---HNQ--------VELEQYPDCNIYFQHKLINLDVNSGNVTFYRT--EDNSETKI  143 (379)
Q Consensus        87 ~~~g-~~-~~~~--------~~~~---~~~--------~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~--~~G~~~~~  143 (379)
                      +... .. ....        +...   ..+        +.+...++++++++++|++++.+++++++++.  .++++   
T Consensus        77 ~g~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~i~v~~~~~v~~~~~~~~~v~v~~~~~~~~~~---  153 (400)
T PRK06475         77 DGRKARPLLAMQLGDLARKRWHHPYIVCHRADLQSALLDACRNNPGIEIKLGAEMTSQRQTGNSITATIIRTNSVET---  153 (400)
T ss_pred             cCCCcceEEEecchhhhhhcCCCCceeECHHHHHHHHHHHHHhcCCcEEEECCEEEEEecCCCceEEEEEeCCCCcE---
Confidence            3211 11 1100        0101   122        23334468999999999999988888887763  13344   


Q ss_pred             EeecEEEecCCCChHHHHHhhhcCCCCccceeeeeeeEEEe-eCCCCCcccc--ccccceeeecCCCCeEEEEEecCCCc
Q psy9141         144 TDNQLIIGADGAYSGVRKCLMKQSMFNYSQTYIEHGYMELC-IPPSEDNEVW--LYKNRLLSSVPEVRKRISLRAQSLKS  220 (379)
Q Consensus       144 i~adlVV~AdG~~S~vr~~l~~~~~~~~~~~~i~~~~~~~~-~p~~~~~~~~--~~p~~~~~~~p~~~~~~~~~~~~~~~  220 (379)
                      ++||+||+|||.+|.+|+++.. ....|............. .+.   ....  ..+.....|+... ..++.+|...+.
T Consensus       154 ~~adlvIgADG~~S~vR~~~~~-~~~~~~g~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~~-~~~~~~p~~~~~  228 (400)
T PRK06475        154 VSAAYLIACDGVWSMLRAKAGF-SKARFSGHIAWRTTLAADALPA---SFLSAMPEHKAVSAWLGNK-AHFIAYPVKGGK  228 (400)
T ss_pred             EecCEEEECCCccHhHHhhcCC-CCCCcCCceEEEEEeehhhcch---hhhhhcccCCceEEEEcCC-CEEEEEEccCCc
Confidence            8999999999999999999732 334554332211111110 111   0000  0111223333222 355666665444


Q ss_pred             eeee---cCCC-----CCCC-hhhhcccc--cccccc---cCCcccC-CCccccCCCCCccccCCcEEEe--eecccCCC
Q psy9141         221 LMNF---PRAD-----QGGD-KRDCLLHE--GTSRIL---VPNMRLS-NHLDRDQPCKPLLDFKNPIKIQ--SHAVVNEF  283 (379)
Q Consensus       221 ~~~~---p~~~-----~~~~-~~~~l~~~--g~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~~~liG--Ah~~~~P~  283 (379)
                      .+++   +...     +... ..+.+...  ++...+   ....... .......+..+|....|++|||  ||+++ |+
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~grvvLiGDAAH~~~-P~  307 (400)
T PRK06475        229 FFNFVAITGGENPGEVWSKTGDKAHLKSIYADWNKPVLQILAAIDEWTYWPLFEMADAQFVGPDRTIFLGDASHAVT-PF  307 (400)
T ss_pred             EEEEEEEEcCCCCcccCCCCCCHHHHHHHhcCCChHHHHHHhcCCceeECcCcccCCCcceecCCEEEEecccccCC-ch
Confidence            4322   1111     1000 01111110  111110   0111000 0011112223444345899999  66655 99


Q ss_pred             cchhhhhHHHHHHHHHHhhcc-----ccccccccchhhhh
Q psy9141         284 YKQESLIVASLCQEKIEKMFD-----NTSTYKSRHINFIH  318 (379)
Q Consensus       284 ~GQG~n~gl~Da~~L~~~l~~-----~~~~~~~~~~~~~~  318 (379)
                      .|||+|+|++||..|+++|..     .++.|++.+...++
T Consensus       308 ~GqG~n~aieDa~~La~~L~~~~~~~aL~~Ye~~R~~r~~  347 (400)
T PRK06475        308 AAQGAAMAIEDAAALAEALDSDDQSAGLKRFDSVRKERIA  347 (400)
T ss_pred             hhhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence            999999999999999999852     45567766644443

>PRK07190 hypothetical protein; Provisional

Probab=99.97  E-value=1.5e-30  Score=260.97  Aligned_cols=293  Identities=13%  Similarity=0.106  Sum_probs=176.3

Q ss_pred             CCCCCCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCc
Q psy9141           1 MKCNSKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPM   80 (379)
Q Consensus         1 M~~m~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~   80 (379)
                      |+ .+.+||+||||||+||++|+.|+++|++|+||||.+.+...    +++.  +++++++++|+.+|+++++...+.+.
T Consensus         1 m~-~~~~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~~~~~~----gra~--~l~~~tle~L~~lGl~~~l~~~~~~~   73 (487)
T PRK07190          1 MS-TQVTDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSDGPLEV----GRAD--ALNARTLQLLELVDLFDELYPLGKPC   73 (487)
T ss_pred             CC-CccceEEEECCCHHHHHHHHHHHHcCCCEEEEeCCCccccc----ccce--EeCHHHHHHHHhcChHHHHHhhCccc
Confidence            55 45689999999999999999999999999999999866433    6665  68999999999999999998777666


Q ss_pred             eeeEEEecCCcEEEe-------e-----CCCCCcH-------HHHhcCCCCeEEeCceEEEEEecCCeEEEEEccCCcee
Q psy9141          81 RARMIHGQNGKLREI-------P-----YDPVHNQ-------VELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSET  141 (379)
Q Consensus        81 ~~~~~~~~~g~~~~~-------~-----~~~~~~~-------~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~  141 (379)
                      ....++.........       .     +....+|       .......|++++++++|++++.+++++++.+. +|++ 
T Consensus        74 ~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~Gv~v~~~~~v~~l~~~~~~v~v~~~-~g~~-  151 (487)
T PRK07190         74 NTSSVWANGKFISRQSSWWEELEGCLHKHFLMLGQSYVEKLLDDKLKEAGAAVKRNTSVVNIELNQAGCLTTLS-NGER-  151 (487)
T ss_pred             eeEEEecCCceEeeccccCccCCcCCCCceEecCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCeeEEEEC-CCcE-
Confidence            655444422111100       0     0011122       11223358999999999999999999888887 8876 


Q ss_pred             EEEeecEEEecCCCChHHHHHh-hhcCCCCccceeeeeeeEEEeeCCCCCccccccccceeeecCCCCeEEEEEecCCCc
Q psy9141         142 KITDNQLIIGADGAYSGVRKCL-MKQSMFNYSQTYIEHGYMELCIPPSEDNEVWLYKNRLLSSVPEVRKRISLRAQSLKS  220 (379)
Q Consensus       142 ~~i~adlVV~AdG~~S~vr~~l-~~~~~~~~~~~~i~~~~~~~~~p~~~~~~~~~~p~~~~~~~p~~~~~~~~~~~~~~~  220 (379)
                        ++|++||+|||.+|.+|+.+ +++.+.++...++   ..+.....+    +.-.+.......+..  .+.+.|...+.
T Consensus       152 --v~a~~vVgADG~~S~vR~~lgi~f~g~~~~~~~~---~~d~~~~~~----~~~~~~~~~~~~~~g--~~~~~p~~~~~  220 (487)
T PRK07190        152 --IQSRYVIGADGSRSFVRNHFNVPFEIIRPQIIWA---VIDGVIDTD----FPKVPEIIVFQAETS--DVAWIPREGEI  220 (487)
T ss_pred             --EEeCEEEECCCCCHHHHHHcCCCccccccceeEE---EEEEEEccC----CCCCcceEEEEcCCC--CEEEEECCCCE
Confidence              99999999999999999998 6666555443322   112211100    000011111111111  23333333221


Q ss_pred             --eee-ecCCCCCCC-hhhhcccc-cccccccCCc-ccCCCccccCCCCCccccCCcEEEe-eecccCCCcchhhhhHHH
Q psy9141         221 --LMN-FPRADQGGD-KRDCLLHE-GTSRILVPNM-RLSNHLDRDQPCKPLLDFKNPIKIQ-SHAVVNEFYKQESLIVAS  293 (379)
Q Consensus       221 --~~~-~p~~~~~~~-~~~~l~~~-g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~liG-Ah~~~~P~~GQG~n~gl~  293 (379)
                        ++. .+.+++..+ ..+.+... .......... ..+.+......+..|....|+.|+| |+++++|+.|||||+|++
T Consensus       221 ~r~~~~~~~~~~t~~~~~~~l~~~~~~~~~~~~~~~w~s~~~~~~r~a~~~r~~gRV~LaGDAAH~h~P~gGQGmN~giq  300 (487)
T PRK07190        221 DRFYVRMDTKDFTLEQAIAKINHAMQPHRLGFKEIVWFSQFSVKESVAEHFFIQDRIFLAGDACHIHSVNGGQGLNTGLA  300 (487)
T ss_pred             EEEEEEcCCCCCCHHHHHHHHHHhcCCCCCceEEEEEEEEeeeCcEehhhcCcCCcEEEEecccccCCCccccchhhhHH
Confidence              111 122222111 11111110 0000000000 0000111222333443235899999 555677999999999999


Q ss_pred             HHHHHHHhhcc---------ccccccccc
Q psy9141         294 LCQEKIEKMFD---------NTSTYKSRH  313 (379)
Q Consensus       294 Da~~L~~~l~~---------~~~~~~~~~  313 (379)
                      ||.+|+++|..         .|.+|++++
T Consensus       301 DA~nL~wkLa~v~~g~a~~~lLdtY~~eR  329 (487)
T PRK07190        301 DAFNLIWKLNMVIHHGASPELLQSYEAER  329 (487)
T ss_pred             HHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence            99999999864         445688776

>PRK06753 hypothetical protein; Provisional

Probab=99.97  E-value=9.3e-30  Score=247.93  Aligned_cols=315  Identities=14%  Similarity=0.161  Sum_probs=192.5

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeEEEe
Q psy9141           8 SVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARMIHG   87 (379)
Q Consensus         8 dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~   87 (379)
                      ||+||||||+|+++|+.|++.|++|+|+||++.+...    |+++  .+++++.+.|+.+|+++.+...+.+.....+++
T Consensus         2 ~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~----g~gi--~l~~~~~~~L~~~gl~~~~~~~~~~~~~~~~~~   75 (373)
T PRK06753          2 KIAIIGAGIGGLTAAALLQEQGHEVKVFEKNESVKEV----GAGI--GIGDNVIKKLGNHDLAKGIKNAGQILSTMNLLD   75 (373)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccccc----ccce--eeChHHHHHHHhcChHHHHHhcCCcccceeEEc
Confidence            7999999999999999999999999999999877543    5665  689999999999999999887778888888887


Q ss_pred             cCCcEE-EeeCCC-----CCcH-----HHHhcCCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEEEecCCCC
Q psy9141          88 QNGKLR-EIPYDP-----VHNQ-----VELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAY  156 (379)
Q Consensus        88 ~~g~~~-~~~~~~-----~~~~-----~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlVV~AdG~~  156 (379)
                      .+|... ..++..     ...+     .......+.+|+++++|++++.+++++++++. +|++   +++|+||+|||.+
T Consensus        76 ~~g~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~-~g~~---~~~~~vigadG~~  151 (373)
T PRK06753         76 DKGTLLNKVKLKSNTLNVTLHRQTLIDIIKSYVKEDAIFTGKEVTKIENETDKVTIHFA-DGES---EAFDLCIGADGIH  151 (373)
T ss_pred             CCCCEEeecccccCCccccccHHHHHHHHHHhCCCceEEECCEEEEEEecCCcEEEEEC-CCCE---EecCEEEECCCcc
Confidence            766542 222211     1122     12233346789999999999988889999988 8887   9999999999999


Q ss_pred             hHHHHHhhhcCCCCccceeeeeeeEEEeeCCCCCccccccccceeeecCCCCeEEEEEecCCCceee---ecCCCC---C
Q psy9141         157 SGVRKCLMKQSMFNYSQTYIEHGYMELCIPPSEDNEVWLYKNRLLSSVPEVRKRISLRAQSLKSLMN---FPRADQ---G  230 (379)
Q Consensus       157 S~vr~~l~~~~~~~~~~~~i~~~~~~~~~p~~~~~~~~~~p~~~~~~~p~~~~~~~~~~~~~~~~~~---~p~~~~---~  230 (379)
                      |.+|+.+.......+.....    +....+...   ....+.....+.++.  .+.+.|...+...+   ++.++.   .
T Consensus       152 S~vR~~~~~~~~~~~~g~~~----~~~~~~~~~---~~~~~~~~~~~~~~g--~~~~~p~~~~~~~~~~~~~~~~~~~~~  222 (373)
T PRK06753        152 SKVRQSVNADSKVRYQGYTC----FRGLIDDID---LKLPDCAKEYWGTKG--RFGIVPLLNNQAYWFITINAKERDPKY  222 (373)
T ss_pred             hHHHHHhCCCCCceEcceEE----EEEEecccc---ccCccceEEEEcCCC--EEEEEEcCCCeEEEEEEeccccCCccc
Confidence            99999984322222221111    111112100   000001111122221  33344444333222   111110   0


Q ss_pred             C-----Chhhhcccc-cccccccCCcccCC----CccccCCCCCccccCCcEEEe--eecccCCCcchhhhhHHHHHHHH
Q psy9141         231 G-----DKRDCLLHE-GTSRILVPNMRLSN----HLDRDQPCKPLLDFKNPIKIQ--SHAVVNEFYKQESLIVASLCQEK  298 (379)
Q Consensus       231 ~-----~~~~~l~~~-g~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~liG--Ah~~~~P~~GQG~n~gl~Da~~L  298 (379)
                      .     .+.+.+... ...+.+........    ......++..|. ..++++||  ||+|. |+.|||+|+||+|+..|
T Consensus       223 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~rv~LiGDAAh~~~-P~~GqG~n~ai~Da~~L  300 (373)
T PRK06753        223 SSFGKPHLQAYFNHYPNEVREILDKQSETGILHHDIYDLKPLKSFV-YGRIVLLGDAAHATT-PNMGQGAGQAMEDAIVL  300 (373)
T ss_pred             ccccHHHHHHHHhcCChHHHHHHHhCCcccceeecccccccccccc-CCCEEEEecccccCC-CCcCccHHHHHHHHHHH
Confidence            0     011111100 00000000000000    011123345565 35899999  66655 99999999999999999


Q ss_pred             HHhhcc-----ccccccccc-------hhhhhheeeeEEeeecccccchhhHHHHHHhhhh
Q psy9141         299 IEKMFD-----NTSTYKSRH-------INFIHRSYHLYTVDIGVHKVTESSILNLLLRGMK  347 (379)
Q Consensus       299 ~~~l~~-----~~~~~~~~~-------~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~  347 (379)
                      +++|.+     .+..|++++       +..++.+.++|+.+.++.    +..-|.+++.+-
T Consensus       301 ~~~L~~~~~~~al~~Y~~~r~~~~~~~~~~s~~~~~~~~~~~~~~----~~~r~~~l~~~~  357 (373)
T PRK06753        301 ANCLNAYDFEKALQRYDKIRVKHTAKVIKRSRKIGKIAQIESKLL----VALRNRVMKRMP  357 (373)
T ss_pred             HHHhhhccHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHhcCCchH----HHHHHHHHHhCC
Confidence            999853     345677665       445555556776655533    346777777663

>PRK08294 phenol 2-monooxygenase; Provisional

Probab=99.97  E-value=4.2e-30  Score=264.89  Aligned_cols=303  Identities=15%  Similarity=0.153  Sum_probs=179.6

Q ss_pred             CCCcEEEECCChHHHHHHHHHHhC-CCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceee
Q psy9141           5 SKKSVVIVGGGLVGSLSACMFAKN-QYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRAR   83 (379)
Q Consensus         5 ~~~dVvIVGaGpaGl~~A~~La~~-G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~   83 (379)
                      +++||+||||||+||++|+.|++. |++|+|||+.+.+...    |+++  +++++++++|+++|+++++.+.+.++...
T Consensus        31 ~~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~~~~~----grA~--gl~prtleiL~~lGl~d~l~~~g~~~~~~  104 (634)
T PRK08294         31 DEVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPGRLEL----GQAD--GIACRTMEMFQAFGFAERILKEAYWINET  104 (634)
T ss_pred             CCCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCCCCCC----Ceee--EEChHHHHHHHhccchHHHHhhcccccce
Confidence            478999999999999999999995 9999999999866544    6665  68999999999999999999888887777


Q ss_pred             EEEecCCc----EE---E-e-------eCCC-CCcH--------HHHhcCC-CCeEEeCceEEEEEecCC---eEEEEEc
Q psy9141          84 MIHGQNGK----LR---E-I-------PYDP-VHNQ--------VELEQYP-DCNIYFQHKLINLDVNSG---NVTFYRT  135 (379)
Q Consensus        84 ~~~~~~g~----~~---~-~-------~~~~-~~~~--------~~~~~~~-gv~i~~~~~v~~i~~~~~---~v~v~~~  135 (379)
                      .++..++.    ..   . .       .+.. ..+|        +.+.... ++++++++++++++.+++   .|++++.
T Consensus       105 ~~~~~~~~~~~~i~r~~~~~~~~~~~~~~~~~~l~Q~~le~~L~~~l~~~g~~v~v~~g~~v~~~~~~~~~~~~V~v~l~  184 (634)
T PRK08294        105 AFWKPDPADPSTIVRTGRVQDTEDGLSEFPHVIVNQARVHDYFLDVMRNSPTRLEPDYGREFVDLEVDEEGEYPVTVTLR  184 (634)
T ss_pred             EEEcCCCccccceeccccccccCCCCCCCccEeeCHHHHHHHHHHHHHhcCCceEEEeCcEEEEEEECCCCCCCEEEEEE
Confidence            77764321    00   0 0       0111 1123        2233322 368899999999987653   4777765


Q ss_pred             c-----CCceeEEEeecEEEecCCCChHHHHHh-hhcCCCCccceeeeeeeEEEe----eCCCCCccccccccceeeecC
Q psy9141         136 E-----DNSETKITDNQLIIGADGAYSGVRKCL-MKQSMFNYSQTYIEHGYMELC----IPPSEDNEVWLYKNRLLSSVP  205 (379)
Q Consensus       136 ~-----~G~~~~~i~adlVV~AdG~~S~vr~~l-~~~~~~~~~~~~i~~~~~~~~----~p~~~~~~~~~~p~~~~~~~p  205 (379)
                      +     +|++.+ ++||+||+|||++|.+|+++ ++..+..+.+.+   +..++.    .|.  ...       ......
T Consensus       185 ~~~~~~~g~~~t-v~A~~lVGaDGa~S~VR~~lgi~~~G~~~~~~~---~v~dv~~~~~~p~--~~~-------~~~~~~  251 (634)
T PRK08294        185 RTDGEHEGEEET-VRAKYVVGCDGARSRVRKAIGRELRGDSANHAW---GVMDVLAVTDFPD--IRL-------KCAIQS  251 (634)
T ss_pred             ECCCCCCCceEE-EEeCEEEECCCCchHHHHhcCCCccCCcccceE---EEEEEEEccCCCC--cce-------EEEEec
Confidence            1     354345 99999999999999999999 666655555443   222221    111  000       000011


Q ss_pred             CCCeEEEEEecCCCceeee-------cCCCC---CCChhhhcccc-----cccccccCCcc-cCCCccccCC--------
Q psy9141         206 EVRKRISLRAQSLKSLMNF-------PRADQ---GGDKRDCLLHE-----GTSRILVPNMR-LSNHLDRDQP--------  261 (379)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~-------p~~~~---~~~~~~~l~~~-----g~~~~~~~~~~-~~~~~~~~~~--------  261 (379)
                      .....+.+.|...+.++.+       +....   .....+.+.+.     +.+..-..... .+.+......        
T Consensus       252 ~~~g~~~~~P~~~g~~~r~~~~~~~~~~~~~~~~~~~t~e~l~~~~~~~~~p~~~~~~~v~w~s~y~i~~r~a~~f~~~~  331 (634)
T PRK08294        252 ASEGSILLIPREGGYLVRLYVDLGEVPPDERVAVRNTTVEEVIAKAQRILHPYTLDVKEVAWWSVYEVGQRLTDRFDDVP  331 (634)
T ss_pred             CCCceEEEEECCCCeEEEEEEecCcCCCccccccccCCHHHHHHHHHHhcCCCCCceeEEeEEecccccceehhhccccc
Confidence            1112445555544432221       10100   00011111111     00000000000 0000000011        


Q ss_pred             -CCCccccCCcEEEe-eecccCCCcchhhhhHHHHHHHHHHhhcc---------ccccccccc-------hhhhhheeee
Q psy9141         262 -CKPLLDFKNPIKIQ-SHAVVNEFYKQESLIVASLCQEKIEKMFD---------NTSTYKSRH-------INFIHRSYHL  323 (379)
Q Consensus       262 -~~~~~~~~~~~liG-Ah~~~~P~~GQG~n~gl~Da~~L~~~l~~---------~~~~~~~~~-------~~~~~~~~~~  323 (379)
                       ...|....|+.|+| |+++++|++|||||+||+|+.+|+++|..         .|.+|++++       +.+++...++
T Consensus       332 ~~~~~~r~gRVfLaGDAAH~hsP~~GQGmN~giqDA~nLawkLa~vl~g~a~~~lL~tYe~ERrp~a~~li~~~~~~~~l  411 (634)
T PRK08294        332 AEEAGTRLPRVFIAGDACHTHSAKAGQGMNVSMQDGFNLGWKLAAVLSGRSPPELLHTYSAERQAIAQELIDFDREWSTM  411 (634)
T ss_pred             ccccccccCCEEEEecCccCCCCccccchhhHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             11222235899999 55556699999999999999999999864         455688776       4555555557


Q ss_pred             EEe
Q psy9141         324 YTV  326 (379)
Q Consensus       324 ~t~  326 (379)
                      |+.
T Consensus       412 ~~~  414 (634)
T PRK08294        412 MAA  414 (634)
T ss_pred             hcc
Confidence            754

>PRK07045 putative monooxygenase; Reviewed

Probab=99.97  E-value=5.5e-30  Score=250.91  Aligned_cols=162  Identities=22%  Similarity=0.340  Sum_probs=118.4

Q ss_pred             CCCCCCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCC-C
Q psy9141           1 MKCNSKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGI-P   79 (379)
Q Consensus         1 M~~m~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~-~   79 (379)
                      |+ +.++||+||||||+|+++|+.|++.|++|+|+|+.+.....    ++++  .+++++.++|+++|+++.+...+. .
T Consensus         1 ~~-~~~~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~----~~~~--~l~~~~~~~L~~lGl~~~~~~~~~~~   73 (388)
T PRK07045          1 MK-NNPVDVLINGSGIAGVALAHLLGARGHSVTVVERAARNRAQ----NGAD--LLKPSGIGVVRAMGLLDDVFAAGGLR   73 (388)
T ss_pred             CC-CceeEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCcccCC----Cccc--ccCccHHHHHHHcCCHHHHHhccccc
Confidence            54 46789999999999999999999999999999999877543    3333  489999999999999999887653 3


Q ss_pred             ceeeEEEecCCcE-EEeeCCC------C--CcH--------HHHhcCCCCeEEeCceEEEEEecCCe--EEEEEccCCce
Q psy9141          80 MRARMIHGQNGKL-REIPYDP------V--HNQ--------VELEQYPDCNIYFQHKLINLDVNSGN--VTFYRTEDNSE  140 (379)
Q Consensus        80 ~~~~~~~~~~g~~-~~~~~~~------~--~~~--------~~~~~~~gv~i~~~~~v~~i~~~~~~--v~v~~~~~G~~  140 (379)
                      .....++. ++.. ...++..      .  ..+        +.+...++++++++++|++++.++++  +.+++. +|++
T Consensus        74 ~~~~~~~~-~g~~~~~~~~~~~~~~g~~~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~-~g~~  151 (388)
T PRK07045         74 RDAMRLYH-DKELIASLDYRSASALGYFILIPCEQLRRLLLAKLDGLPNVRLRFETSIERIERDADGTVTSVTLS-DGER  151 (388)
T ss_pred             ccceEEec-CCcEEEEecCCccccCCceEEccHHHHHHHHHHHHhcCCCeeEEeCCEEEEEEECCCCcEEEEEeC-CCCE
Confidence            33344433 3332 2222211      0  111        23345678999999999999987665  357787 8876


Q ss_pred             eEEEeecEEEecCCCChHHHHHhh--hcCCCCccce
Q psy9141         141 TKITDNQLIIGADGAYSGVRKCLM--KQSMFNYSQT  174 (379)
Q Consensus       141 ~~~i~adlVV~AdG~~S~vr~~l~--~~~~~~~~~~  174 (379)
                         +++|+||+|||.+|.+|+.+.  +.....|.+.
T Consensus       152 ---~~~~~vIgADG~~S~vR~~~~~~~~~~~~~~~~  184 (388)
T PRK07045        152 ---VAPTVLVGADGARSMIRDDVLRMPAERVPYATP  184 (388)
T ss_pred             ---EECCEEEECCCCChHHHHHhhCCCcccCCCCcc
Confidence               999999999999999999763  3333344443

>PRK06126 hypothetical protein; Provisional

Probab=99.97  E-value=1.1e-29  Score=259.43  Aligned_cols=165  Identities=23%  Similarity=0.329  Sum_probs=118.7

Q ss_pred             CCCCCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCce
Q psy9141           2 KCNSKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMR   81 (379)
Q Consensus         2 ~~m~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~   81 (379)
                      +++.++||+||||||+||++|+.|+++|++|+||||.+.....    ++++  +++++++++|+++|+++++.+.+.+..
T Consensus         3 ~~~~~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~~~~~~----~ra~--~l~~r~~e~L~~lGl~~~l~~~g~~~~   76 (545)
T PRK06126          3 ENTSETPVLIVGGGPVGLALALDLGRRGVDSILVERKDGTAFN----PKAN--TTSARSMEHFRRLGIADEVRSAGLPVD   76 (545)
T ss_pred             CCCccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCC----Cccc--cCCHHHHHHHHhcChHHHHHhhcCCcc
Confidence            3456799999999999999999999999999999998765433    5655  689999999999999999987765431


Q ss_pred             ---ee-EEEecCCcE-EEeeC-----------------C-----CCCcH--------HHHhcCCCCeEEeCceEEEEEec
Q psy9141          82 ---AR-MIHGQNGKL-REIPY-----------------D-----PVHNQ--------VELEQYPDCNIYFQHKLINLDVN  126 (379)
Q Consensus        82 ---~~-~~~~~~g~~-~~~~~-----------------~-----~~~~~--------~~~~~~~gv~i~~~~~v~~i~~~  126 (379)
                         .. ......|.. ..+.+                 .     ....+        +.+.+.++++|+++++|++++.+
T Consensus        77 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~q~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~  156 (545)
T PRK06126         77 YPTDIAYFTRLTGYELARFRLPSAREAITPVGGPDGSWPSPELPHRIPQKYLEPILLEHAAAQPGVTLRYGHRLTDFEQD  156 (545)
T ss_pred             ccCCceEEecCCCceeeeeecCCcCcccccccccccccCCCCccccCCHHHHHHHHHHHHHhCCCceEEeccEEEEEEEC
Confidence               11 111112221 11110                 0     00122        23334578999999999999999


Q ss_pred             CCeEEEEEc--cCCceeEEEeecEEEecCCCChHHHHHh-hhcCCCCccc
Q psy9141         127 SGNVTFYRT--EDNSETKITDNQLIIGADGAYSGVRKCL-MKQSMFNYSQ  173 (379)
Q Consensus       127 ~~~v~v~~~--~~G~~~~~i~adlVV~AdG~~S~vr~~l-~~~~~~~~~~  173 (379)
                      ++++++++.  .+|+..+ +++|+||+|||++|.+|+.+ +...+..+.+
T Consensus       157 ~~~v~v~~~~~~~g~~~~-i~ad~vVgADG~~S~VR~~lgi~~~g~~~~~  205 (545)
T PRK06126        157 ADGVTATVEDLDGGESLT-IRADYLVGCDGARSAVRRSLGISYEGTSGLQ  205 (545)
T ss_pred             CCeEEEEEEECCCCcEEE-EEEEEEEecCCcchHHHHhcCCccccCCCcc
Confidence            888877653  1466556 99999999999999999998 5555444433

>PRK06996 hypothetical protein; Provisional

Probab=99.97  E-value=3.8e-31  Score=259.92  Aligned_cols=322  Identities=14%  Similarity=0.116  Sum_probs=187.3

Q ss_pred             CCCcEEEECCChHHHHHHHHHHhCC----CcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCc
Q psy9141           5 SKKSVVIVGGGLVGSLSACMFAKNQ----YEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPM   80 (379)
Q Consensus         5 ~~~dVvIVGaGpaGl~~A~~La~~G----~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~   80 (379)
                      ..+||+||||||+|+++|+.|+++|    ++|+|+|+.+...  ...+.+++  ++++.+.++|+++|+|+.   .+.++
T Consensus        10 ~~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~~~~--~~~~~r~~--~l~~~~~~~L~~lg~~~~---~~~~~   82 (398)
T PRK06996         10 PDFDIAIVGAGPVGLALAGWLARRSATRALSIALIDAREPAA--SANDPRAI--ALSHGSRVLLETLGAWPA---DATPI   82 (398)
T ss_pred             CCCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCCCCc--CCCCceEE--EecHHHHHHHHhCCCchh---cCCcc
Confidence            4589999999999999999999997    4799999986443  12345666  789999999999999986   45566


Q ss_pred             eeeEEEecC--CcEE----EeeCCC---CCcH--------HHHhcCCCCeEEeCceEEEEEecCCeEEEEEccCCc-eeE
Q psy9141          81 RARMIHGQN--GKLR----EIPYDP---VHNQ--------VELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNS-ETK  142 (379)
Q Consensus        81 ~~~~~~~~~--g~~~----~~~~~~---~~~~--------~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~-~~~  142 (379)
                      ....+++..  +...    ...+..   ...+        +.+. ..++++++++++++++.+++++++++. +|+ ..+
T Consensus        83 ~~~~~~~~~~~g~~~~~~~~~~~~~~g~~v~r~~l~~~L~~~~~-~~g~~~~~~~~v~~~~~~~~~v~v~~~-~~~g~~~  160 (398)
T PRK06996         83 EHIHVSQRGHFGRTLIDRDDHDVPALGYVVRYGSLVAALARAVR-GTPVRWLTSTTAHAPAQDADGVTLALG-TPQGART  160 (398)
T ss_pred             cEEEEecCCCCceEEecccccCCCcCEEEEEhHHHHHHHHHHHH-hCCCEEEcCCeeeeeeecCCeEEEEEC-CCCcceE
Confidence            666665432  1110    001111   1111        2333 347999999999999999999999887 552 123


Q ss_pred             EEeecEEEecCCC-ChHHHHHh-hhcCCCCccceeeeeeeEEEeeCCC--------CCccccccccceeeecCCCCeEEE
Q psy9141         143 ITDNQLIIGADGA-YSGVRKCL-MKQSMFNYSQTYIEHGYMELCIPPS--------EDNEVWLYKNRLLSSVPEVRKRIS  212 (379)
Q Consensus       143 ~i~adlVV~AdG~-~S~vr~~l-~~~~~~~~~~~~i~~~~~~~~~p~~--------~~~~~~~~p~~~~~~~p~~~~~~~  212 (379)
                       ++||+||+|||+ +|.+|+.+ +......|.+.++.. ......|..        +.++++++|.....   .....++
T Consensus       161 -i~a~lvIgADG~~~s~~r~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~G~~~~lp~~~~~---~~~~~~v  235 (398)
T PRK06996        161 -LRARIAVQAEGGLFHDQKADAGDSARRRDYGQTAIVG-TVTVSAPRPGWAWERFTHEGPLALLPLGGPR---QADYALV  235 (398)
T ss_pred             -EeeeEEEECCCCCchHHHHHcCCCceeeecCCeEEEE-EEEccCCCCCEEEEEecCCCCeEEeECCCCC---CCcEEEE
Confidence             999999999997 57788877 556666777765421 111111110        12233333311000   0001111


Q ss_pred             EEecC--CCceeeecCCCCCCChhhhcccc-cccccccCCcccCCCccccCCCCCccccCCcEEEe-eecccCCCcchhh
Q psy9141         213 LRAQS--LKSLMNFPRADQGGDKRDCLLHE-GTSRILVPNMRLSNHLDRDQPCKPLLDFKNPIKIQ-SHAVVNEFYKQES  288 (379)
Q Consensus       213 ~~~~~--~~~~~~~p~~~~~~~~~~~l~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liG-Ah~~~~P~~GQG~  288 (379)
                      +....  ......++.+++...+.+.+... +..........   +.........|. ..|++++| |++.+||+.|||+
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~~~-~grv~LiGDAAH~~~P~~GQG~  311 (398)
T PRK06996        236 WCCAPDEAARRAALPDDAFLAELGAAFGTRMGRFTRIAGRHA---FPLGLNAARTLV-NGRIAAVGNAAQTLHPVAGQGL  311 (398)
T ss_pred             EECCHHHHHHHHcCCHHHHHHHHHHHhccccCceEEecceEE---Eeeeccccccee-cCCEEEEEhhhccCCcccchhH
Confidence            11100  00011111111111111112111 00000000000   011122334555 35899999 4444459999999


Q ss_pred             hhHHHHHHHHHHhhcc------ccccccccc-------hhhhhheeeeEEeeecccccchhhHHHHHHhhhhc
Q psy9141         289 LIVASLCQEKIEKMFD------NTSTYKSRH-------INFIHRSYHLYTVDIGVHKVTESSILNLLLRGMKK  348 (379)
Q Consensus       289 n~gl~Da~~L~~~l~~------~~~~~~~~~-------~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~  348 (379)
                      |+||+|+.+|+++|.+      .+.+|++++       +..++.+.++|+++.++.    ..+-|+++.-+.+
T Consensus       312 n~ai~Da~~La~~L~~~~~~~~~L~~Y~~~R~~~~~~~~~~s~~l~~~~~~~~~~~----~~~R~~~l~~~~~  380 (398)
T PRK06996        312 NLGLRDAHTLADALSDHGATPLALATFAARRALDRRVTIGATDLLPRLFTVDSRPL----AHLRGAALTALEF  380 (398)
T ss_pred             HHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHH----HHHHhHHHHHHhh
Confidence            9999999999999964      345688776       466777777888776643    3556666654444

>PRK07236 hypothetical protein; Provisional

Probab=99.97  E-value=6.3e-30  Score=250.35  Aligned_cols=164  Identities=23%  Similarity=0.363  Sum_probs=125.3

Q ss_pred             CCCCCCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCc
Q psy9141           1 MKCNSKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPM   80 (379)
Q Consensus         1 M~~m~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~   80 (379)
                      |..|+..+|+||||||+||++|+.|++.|++|+|+||.+....   ..|.++  .+++++.++|+++|+++.. ..+.+.
T Consensus         1 ~~~~~~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~---~~g~gi--~l~~~~~~~l~~lg~~~~~-~~~~~~   74 (386)
T PRK07236          1 MTHMSGPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPTELD---GRGAGI--VLQPELLRALAEAGVALPA-DIGVPS   74 (386)
T ss_pred             CCCCCCCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCcC---CCCcee--EeCHHHHHHHHHcCCCccc-ccccCc
Confidence            6678889999999999999999999999999999999875421   225554  6899999999999998765 456666


Q ss_pred             eeeEEEecCCcEEE-eeCCCC-CcH-----HHHhcCCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEEEecC
Q psy9141          81 RARMIHGQNGKLRE-IPYDPV-HNQ-----VELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGAD  153 (379)
Q Consensus        81 ~~~~~~~~~g~~~~-~~~~~~-~~~-----~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlVV~Ad  153 (379)
                      ....+++.+|.... .++... ...     ......++++++++++|++++.+++++++++. +|++   ++||+||+||
T Consensus        75 ~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~-~g~~---~~ad~vIgAD  150 (386)
T PRK07236         75 RERIYLDRDGRVVQRRPMPQTQTSWNVLYRALRAAFPAERYHLGETLVGFEQDGDRVTARFA-DGRR---ETADLLVGAD  150 (386)
T ss_pred             cceEEEeCCCCEeeccCCCccccCHHHHHHHHHHhCCCcEEEcCCEEEEEEecCCeEEEEEC-CCCE---EEeCEEEECC
Confidence            66666666665321 122111 111     22334467889999999999999889999998 8987   9999999999


Q ss_pred             CCChHHHHHhhhcCCCCccce
Q psy9141         154 GAYSGVRKCLMKQSMFNYSQT  174 (379)
Q Consensus       154 G~~S~vr~~l~~~~~~~~~~~  174 (379)
                      |.+|.+|+++.+.....|...
T Consensus       151 G~~S~vR~~l~~~~~~~~~g~  171 (386)
T PRK07236        151 GGRSTVRAQLLPDVRPTYAGY  171 (386)
T ss_pred             CCCchHHHHhCCCCCCCcCCe
Confidence            999999999855444555543

>PRK08244 hypothetical protein; Provisional

Probab=99.97  E-value=5.5e-30  Score=258.48  Aligned_cols=293  Identities=18%  Similarity=0.099  Sum_probs=173.1

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeEE
Q psy9141           6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARMI   85 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~~   85 (379)
                      ++||+||||||+||++|+.|++.|++|+||||.+.+...    ++++  .++++++++|+++|+++++.+.+.++....+
T Consensus         2 ~~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~~~~~----~ra~--~l~~~~~e~l~~lGl~~~l~~~~~~~~~~~~   75 (493)
T PRK08244          2 KYEVIIIGGGPVGLMLASELALAGVKTCVIERLKETVPY----SKAL--TLHPRTLEILDMRGLLERFLEKGRKLPSGHF   75 (493)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCC----ccee--EecHHHHHHHHhcCcHHHHHhhcccccceEE
Confidence            389999999999999999999999999999999876433    6766  6899999999999999999887766665555


Q ss_pred             EecCCcEE------EeeCCCCCcH-------HHHhcCCCCeEEeCceEEEEEecCCeEEEEEcc-CCceeEEEeecEEEe
Q psy9141          86 HGQNGKLR------EIPYDPVHNQ-------VELEQYPDCNIYFQHKLINLDVNSGNVTFYRTE-DNSETKITDNQLIIG  151 (379)
Q Consensus        86 ~~~~g~~~------~~~~~~~~~~-------~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~-~G~~~~~i~adlVV~  151 (379)
                      ....+...      ..++.....|       ....+..++++++++++++++.+++++++++.. +|+ .+ ++||+||+
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~-~~-i~a~~vVg  153 (493)
T PRK08244         76 AGLDTRLDFSALDTSSNYTLFLPQAETEKVLEEHARSLGVEIFRGAEVLAVRQDGDGVEVVVRGPDGL-RT-LTSSYVVG  153 (493)
T ss_pred             ecccccCCcccCCCCCCcEEEecHHHHHHHHHHHHHHcCCeEEeCCEEEEEEEcCCeEEEEEEeCCcc-EE-EEeCEEEE
Confidence            43222110      0111111122       122234589999999999999988888776641 452 34 99999999


Q ss_pred             cCCCChHHHHHh-hhcCCCCccceeeeeeeEEEeeCCCCCccccccccceeeecCCCCeEEEEEecCCCcee--e-ecCC
Q psy9141         152 ADGAYSGVRKCL-MKQSMFNYSQTYIEHGYMELCIPPSEDNEVWLYKNRLLSSVPEVRKRISLRAQSLKSLM--N-FPRA  227 (379)
Q Consensus       152 AdG~~S~vr~~l-~~~~~~~~~~~~i~~~~~~~~~p~~~~~~~~~~p~~~~~~~p~~~~~~~~~~~~~~~~~--~-~p~~  227 (379)
                      |||++|.+|+.+ +++.+.++....+. .......++  ....      ...+.+..  .+.+.|...+.+.  . .|..
T Consensus       154 ADG~~S~vR~~lgi~~~g~~~~~~~~~-~~~~~~~~~--~~~~------~~~~~~~g--~~~~~P~~~~~~~~~~~~~~~  222 (493)
T PRK08244        154 ADGAGSIVRKQAGIAFPGTDATFTAML-GDVVLKDPP--PSSV------LSLCTREG--GVMIVPLSGGIYRVLIIDPER  222 (493)
T ss_pred             CCCCChHHHHhcCCCccCCCcceEEEE-EEEEecCCC--Ccce------eEEEeCCc--eEEEEECCCCeEEEEEEcCCc
Confidence            999999999998 55555555544331 111111111  1100      01111221  2333343322211  1 1111


Q ss_pred             CC----CCChhhhcccc--cccccccCCcccC---CCccccCCCCCccccCCcEEEe-eecccCCCcchhhhhHHHHHHH
Q psy9141         228 DQ----GGDKRDCLLHE--GTSRILVPNMRLS---NHLDRDQPCKPLLDFKNPIKIQ-SHAVVNEFYKQESLIVASLCQE  297 (379)
Q Consensus       228 ~~----~~~~~~~l~~~--g~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~liG-Ah~~~~P~~GQG~n~gl~Da~~  297 (379)
                      ..    .....+.+.+.  .............   .+.........|. ..|++|+| |++.++|+.|||+|+||+|+.+
T Consensus       223 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~-~gRv~L~GDAAH~~~P~~GqG~n~gi~DA~~  301 (493)
T PRK08244        223 PQVPKDEPVTLEELKTSLIRICGTDFGLNDPVWMSRFGNATRQAERYR-SGRIFLAGDAAHIHFPAGGQGLNVGLQDAMN  301 (493)
T ss_pred             ccccCCCCCCHHHHHHHHHHhhCCCCCcCCeeEEEecccceeeHhhhc-cCcEEEeecceeccCCccccccccchhhHHH
Confidence            00    00011111111  0000000000000   0001111223343 34899999 4444569999999999999999


Q ss_pred             HHHhhcc---------ccccccccchhhhh
Q psy9141         298 KIEKMFD---------NTSTYKSRHINFIH  318 (379)
Q Consensus       298 L~~~l~~---------~~~~~~~~~~~~~~  318 (379)
                      |+++|.+         .+.+|++++.....
T Consensus       302 La~~La~~l~g~~~~~lL~~Ye~eR~~~~~  331 (493)
T PRK08244        302 LGWKLAAAIKGWAPDWLLDSYHAERHPVGT  331 (493)
T ss_pred             HHHHHHHHHcCCCCchhhhhhHHHHHHHHH
Confidence            9999864         34568877644443

>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated

Probab=99.97  E-value=5.1e-30  Score=251.50  Aligned_cols=153  Identities=19%  Similarity=0.236  Sum_probs=115.4

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeEE
Q psy9141           6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARMI   85 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~~   85 (379)
                      ++||+||||||+|+++|+.|++.|++|+|+||.+......  ..++.  .+.+++.++|+++|+++++.+.+.+.....+
T Consensus         2 ~~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~--~~~a~--~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~   77 (392)
T PRK08243          2 RTQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSREYVEG--RIRAG--VLEQGTVDLLREAGVGERMDREGLVHDGIEL   77 (392)
T ss_pred             cceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCcccccc--cccee--EECHhHHHHHHHcCChHHHHhcCCccCcEEE
Confidence            4799999999999999999999999999999998532111  11222  4789999999999999999887878777777


Q ss_pred             EecCCcEEEeeCCCC--------CcH-------HHHhcCCCCeEEeCceEEEEEe-cCCeEEEEEccCCceeEEEeecEE
Q psy9141          86 HGQNGKLREIPYDPV--------HNQ-------VELEQYPDCNIYFQHKLINLDV-NSGNVTFYRTEDNSETKITDNQLI  149 (379)
Q Consensus        86 ~~~~g~~~~~~~~~~--------~~~-------~~~~~~~gv~i~~~~~v~~i~~-~~~~v~v~~~~~G~~~~~i~adlV  149 (379)
                      +. ++....+++...        .++       .......++++++++++++++. +++.+.+++..+|++.+ ++||+|
T Consensus        78 ~~-~g~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~a~~~gv~v~~~~~v~~i~~~~~~~~~V~~~~~G~~~~-i~ad~v  155 (392)
T PRK08243         78 RF-DGRRHRIDLTELTGGRAVTVYGQTEVTRDLMAARLAAGGPIRFEASDVALHDFDSDRPYVTYEKDGEEHR-LDCDFI  155 (392)
T ss_pred             EE-CCEEEEeccccccCCceEEEeCcHHHHHHHHHHHHhCCCeEEEeeeEEEEEecCCCceEEEEEcCCeEEE-EEeCEE
Confidence            65 343333333211        012       1222346899999999999987 66677777632776556 999999


Q ss_pred             EecCCCChHHHHHhh
Q psy9141         150 IGADGAYSGVRKCLM  164 (379)
Q Consensus       150 V~AdG~~S~vr~~l~  164 (379)
                      |+|||.+|.+|+++.
T Consensus       156 VgADG~~S~vR~~~~  170 (392)
T PRK08243        156 AGCDGFHGVSRASIP  170 (392)
T ss_pred             EECCCCCCchhhhcC
Confidence            999999999999983

>PRK09126 hypothetical protein; Provisional

Probab=99.97  E-value=6e-31  Score=257.97  Aligned_cols=321  Identities=15%  Similarity=0.136  Sum_probs=189.2

Q ss_pred             CCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCC-CCCCCCcccccccCHHHHHHHHHCCChHHHHhCC-CCcee
Q psy9141           5 SKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRN-SGLSEGKSINLALSVRGREALRRIGLEDKLLAHG-IPMRA   82 (379)
Q Consensus         5 ~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~-~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~-~~~~~   82 (379)
                      +++||+||||||+|+++|+.|+++|++|+|+||.+.+.. .+...|+++  .+++++.++|+++|+++.+...+ .+...
T Consensus         2 ~~~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~g~~i--~l~~~~~~~L~~lGl~~~~~~~~~~~~~~   79 (392)
T PRK09126          2 MHSDIVVVGAGPAGLSFARSLAGSGLKVTLIERQPLAALADPAFDGREI--ALTHASREILQRLGAWDRIPEDEISPLRD   79 (392)
T ss_pred             CcccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCcccccCCCCchhHH--HhhHHHHHHHHHCCChhhhccccCCccce
Confidence            368999999999999999999999999999999987542 123456765  67899999999999999886553 45566


Q ss_pred             eEEEecCCcE-EEeeC--------CCCCcH--------HHHhcCCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEe
Q psy9141          83 RMIHGQNGKL-REIPY--------DPVHNQ--------VELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITD  145 (379)
Q Consensus        83 ~~~~~~~g~~-~~~~~--------~~~~~~--------~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~  145 (379)
                      ..+++..... ..++.        ++...+        +.+.+..+++++++++|++++.++++++++++ +|++   ++
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~~g~~i~~~~~v~~~~~~~~~~~v~~~-~g~~---~~  155 (392)
T PRK09126         80 AKVLNGRSPFALTFDARGRGADALGYLVPNHLIRRAAYEAVSQQDGIELLTGTRVTAVRTDDDGAQVTLA-NGRR---LT  155 (392)
T ss_pred             EEEEcCCCCceeEeehhhcCCCcceEEEeHHHHHHHHHHHHhhCCCcEEEcCCeEEEEEEcCCeEEEEEc-CCCE---EE
Confidence            6666543321 11111        110111        23334579999999999999988888888888 8876   99


Q ss_pred             ecEEEecCCCChHHHHHh-hhcCCCCccceeeeeeeEEEeeCCCCCccccccccceeeecCCCCeEEEEEecCCCcee--
Q psy9141         146 NQLIIGADGAYSGVRKCL-MKQSMFNYSQTYIEHGYMELCIPPSEDNEVWLYKNRLLSSVPEVRKRISLRAQSLKSLM--  222 (379)
Q Consensus       146 adlVV~AdG~~S~vr~~l-~~~~~~~~~~~~i~~~~~~~~~p~~~~~~~~~~p~~~~~~~p~~~~~~~~~~~~~~~~~--  222 (379)
                      ||+||+|||.+|.+|+.+ ++.....+++.++..   .+..+. +.      ......++... ..+.++|...+...  
T Consensus       156 a~~vI~AdG~~S~vr~~~g~~~~~~~~~~~~~~~---~~~~~~-~~------~~~~~~~~~~~-~~~~~~P~~~~~~~~~  224 (392)
T PRK09126        156 ARLLVAADSRFSATRRQLGIGADMHDFGRTMLVC---RMRHEL-PH------HHTAWEWFGYG-QTLALLPLNGHLSSLV  224 (392)
T ss_pred             eCEEEEeCCCCchhhHhcCCCccccccCCeEEEE---EEeccC-CC------CCEEEEEecCC-CCeEEeECCCCCEEEE
Confidence            999999999999999998 444444555443311   111111 00      01112222222 12344444433221  


Q ss_pred             -eecCCC---CCCChhhhcccc--cccccccCCcccC----CCccccCCCCCccccCCcEEEe-eecccCCCcchhhhhH
Q psy9141         223 -NFPRAD---QGGDKRDCLLHE--GTSRILVPNMRLS----NHLDRDQPCKPLLDFKNPIKIQ-SHAVVNEFYKQESLIV  291 (379)
Q Consensus       223 -~~p~~~---~~~~~~~~l~~~--g~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~liG-Ah~~~~P~~GQG~n~g  291 (379)
                       .++.+.   ......+.+...  ..+......+...    .......++.+|. ..+++|+| |++.++|+.|||+|+|
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~rv~LvGDAAh~~~P~~GqG~~~a  303 (392)
T PRK09126        225 LTLPPDQIEALLALDPEAFAAEVTARFKGRLGAMRLVSSRHAYPLVAVYAHRFV-AKRFALIGDAAVGMHPVTAHGFNLG  303 (392)
T ss_pred             EECCHHHHHHHHcCCHHHHHHHHHHHHhhhccCeEEcCCCcEeechHHHHHHHh-hcceEEEehhhhcCCCcccchhhhh
Confidence             112110   000001111100  0000000111100    0001112234454 35899999 4444559999999999


Q ss_pred             HHHHHHHHHhhcc------------ccccccccc-------hhhhhheeeeEEeeecccccchhhHHHHHHhhhh
Q psy9141         292 ASLCQEKIEKMFD------------NTSTYKSRH-------INFIHRSYHLYTVDIGVHKVTESSILNLLLRGMK  347 (379)
Q Consensus       292 l~Da~~L~~~l~~------------~~~~~~~~~-------~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~  347 (379)
                      ++|+..|+++|.+            .+..|++++       +..++.+..+|..+.++.+    .+-|++++-+.
T Consensus       304 i~da~~la~~L~~~~~~~~~~~~~~~l~~Y~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~----~~r~~~~~~~~  374 (392)
T PRK09126        304 LKGQDILARLILAAARRGQDIGAASLLERYERKHRLATRPLYHATNAIAALYTDDRPPAR----LLRRAVLRAAN  374 (392)
T ss_pred             HHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHH----HHHHHHHHHHh
Confidence            9999999999853            234577666       3444444446665544433    44555555443

>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase

Probab=99.97  E-value=3e-30  Score=252.07  Aligned_cols=316  Identities=19%  Similarity=0.209  Sum_probs=187.6

Q ss_pred             cEEEECCChHHHHHHHHHHhCC-CcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeEEE
Q psy9141           8 SVVIVGGGLVGSLSACMFAKNQ-YEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARMIH   86 (379)
Q Consensus         8 dVvIVGaGpaGl~~A~~La~~G-~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~   86 (379)
                      ||+||||||+|+++|+.|+++| ++|+|+||.+.+......+++++  .+++++.++|+++|+++.+...+.+.....+.
T Consensus         1 dv~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~~~~~~~~~~~~--~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~   78 (382)
T TIGR01984         1 DVIIVGGGLVGLSLALALSRLGKIKIALIEANSPSAAQPGFDARSL--ALSYGSKQILEKLGLWPKLAPFATPILDIHVS   78 (382)
T ss_pred             CEEEECccHHHHHHHHHHhcCCCceEEEEeCCCccccCCCCCCeeE--eccHHHHHHHHHCCChhhhHhhcCccceEEEE
Confidence            7999999999999999999999 99999999987654322345665  68899999999999999987777666666555


Q ss_pred             ecCCc-EEEee---CCCC-----CcH--------HHHhcCCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEE
Q psy9141          87 GQNGK-LREIP---YDPV-----HNQ--------VELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLI  149 (379)
Q Consensus        87 ~~~g~-~~~~~---~~~~-----~~~--------~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlV  149 (379)
                      +..+. .....   +...     ..+        +.+...+|++++++++|++++.+++++++++. +|++   ++||+|
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~gv~~~~~~~v~~i~~~~~~~~v~~~-~g~~---~~ad~v  154 (382)
T TIGR01984        79 DQGHFGATHLRASEFGLPALGYVVELADLGQALLSRLALLTNIQLYCPARYKEIIRNQDYVRVTLD-NGQQ---LRAKLL  154 (382)
T ss_pred             cCCCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcEEEcCCeEEEEEEcCCeEEEEEC-CCCE---EEeeEE
Confidence            43211 11111   1110     111        22333359999999999999988889999888 8876   999999


Q ss_pred             EecCCCChHHHHHh-hhcCCCCccceeeeeeeEEEeeCCCCCccccccccceeeecCCCCeEEEEEecCCC-c--ee-ee
Q psy9141         150 IGADGAYSGVRKCL-MKQSMFNYSQTYIEHGYMELCIPPSEDNEVWLYKNRLLSSVPEVRKRISLRAQSLK-S--LM-NF  224 (379)
Q Consensus       150 V~AdG~~S~vr~~l-~~~~~~~~~~~~i~~~~~~~~~p~~~~~~~~~~p~~~~~~~p~~~~~~~~~~~~~~-~--~~-~~  224 (379)
                      |+|||.+|.+|+.+ +......+++..+. .......+.  .. ..     ...+.+..  .+.+.|...+ .  ++ ..
T Consensus       155 V~AdG~~S~vr~~l~~~~~~~~~~~~~~~-~~~~~~~~~--~~-~~-----~~~~~~~g--~~~~~p~~~~~~~~~~~~~  223 (382)
T TIGR01984       155 IAADGANSKVRELLSIPTEEHDYNQTALI-ANIRHEQPH--QG-CA-----FERFTPHG--PLALLPLKDNYRSSLVWCL  223 (382)
T ss_pred             EEecCCChHHHHHcCCCCcccccCCEEEE-EEEEecCCC--CC-EE-----EEeeCCCC--CeEECcCCCCCCEEEEEEC
Confidence            99999999999998 44444455444331 111111111  01 00     01111111  2333343323 1  11 11


Q ss_pred             cCCC-------CCCChhhhcccccccccccCCcccC----CCccccCCCCCccccCCcEEEe--eecccCCCcchhhhhH
Q psy9141         225 PRAD-------QGGDKRDCLLHEGTSRILVPNMRLS----NHLDRDQPCKPLLDFKNPIKIQ--SHAVVNEFYKQESLIV  291 (379)
Q Consensus       225 p~~~-------~~~~~~~~l~~~g~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~liG--Ah~~~~P~~GQG~n~g  291 (379)
                      |.+.       ......+.+.+.  +..........    ..........+|. ..|++++|  ||++ +|+.|||+|++
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~rv~LvGDAAh~~-~P~~GqG~~~a  299 (382)
T TIGR01984       224 PSKQADTIANLPDAEFLAELQQA--FGWRLGKITQVGERKTYPLKLRIAETHV-HPRVVLIGNAAQTL-HPIAGQGFNLG  299 (382)
T ss_pred             CHHHHHHHHcCCHHHHHHHHHHH--HhhhccCeEEcCCccEeecchhhhhhee-cCCEEEEeeccccc-CCccccchhhh
Confidence            1110       000011111111  00000000000    0011112233444 24899999  5555 59999999999


Q ss_pred             HHHHHHHHHhhccc---------cccccccc-------hhhhhheeeeEEeeecccccchhhHHHHHHhhhhc
Q psy9141         292 ASLCQEKIEKMFDN---------TSTYKSRH-------INFIHRSYHLYTVDIGVHKVTESSILNLLLRGMKK  348 (379)
Q Consensus       292 l~Da~~L~~~l~~~---------~~~~~~~~-------~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~  348 (379)
                      |+||..|+++|.+.         +..|++++       +...+.++++|..+.++    ...+-|++++-+.+
T Consensus       300 l~Da~~La~~L~~~~~~~~~~~~l~~Y~~~r~~~~~~~~~~~~~~~~~~~~~~~~----~~~~r~~~~~~~~~  368 (382)
T TIGR01984       300 LRDVETLAEVLIDARIDLGTYALLQEYLRRRQFDQFITIGLTDGLNRLFSNHIPL----LRALRNLGLLALEN  368 (382)
T ss_pred             HHHHHHHHHHHHHhccCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchH----HHHHHHHHHHHHhc
Confidence            99999999998643         33576665       34455556677554443    24566777765543

This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.

>PTZ00367 squalene epoxidase; Provisional

Probab=99.97  E-value=1.3e-29  Score=256.62  Aligned_cols=278  Identities=14%  Similarity=0.157  Sum_probs=166.7

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceee
Q psy9141           4 NSKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRAR   83 (379)
Q Consensus         4 m~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~   83 (379)
                      +.++||+||||||+|+++|+.|+++|++|+|+||++.....   ...+  .++++++.++|+++|+|+.+...+.++.+.
T Consensus        31 ~~~~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~~~~~~---r~~G--~~L~p~g~~~L~~LGL~d~l~~i~~~~~~~  105 (567)
T PTZ00367         31 NYDYDVIIVGGSIAGPVLAKALSKQGRKVLMLERDLFSKPD---RIVG--ELLQPGGVNALKELGMEECAEGIGMPCFGY  105 (567)
T ss_pred             ccCccEEEECCCHHHHHHHHHHHhcCCEEEEEccccccccc---hhhh--hhcCHHHHHHHHHCCChhhHhhcCcceeee
Confidence            35689999999999999999999999999999998621110   1122  258999999999999999998778888888


Q ss_pred             EEEecCCcEEEeeCCCCC-----cH--------HHH--hcCCCCeEEeCceEEEEEecCC-------eEEEEEccC----
Q psy9141          84 MIHGQNGKLREIPYDPVH-----NQ--------VEL--EQYPDCNIYFQHKLINLDVNSG-------NVTFYRTED----  137 (379)
Q Consensus        84 ~~~~~~g~~~~~~~~~~~-----~~--------~~~--~~~~gv~i~~~~~v~~i~~~~~-------~v~v~~~~~----  137 (379)
                      .+++.+|.....++....     ..        ..+  +..++++++. .+++++..+++       +++++.. +    
T Consensus       106 ~v~~~~G~~~~i~~~~~~~g~~~~rg~~~~~Lr~~a~~~~~~~V~v~~-~~v~~l~~~~~~~~~~v~gV~~~~~-~~~~~  183 (567)
T PTZ00367        106 VVFDHKGKQVKLPYGAGASGVSFHFGDFVQNLRSHVFHNCQDNVTMLE-GTVNSLLEEGPGFSERAYGVEYTEA-EKYDV  183 (567)
T ss_pred             EEEECCCCEEEecCCCCCceeEeEHHHHHHHHHHHHHhhcCCCcEEEE-eEEEEeccccCccCCeeEEEEEecC-Ccccc
Confidence            888876654444443211     11        222  2457899875 47888755443       3555544 3    


Q ss_pred             -------------------CceeEEEeecEEEecCCCChHHHHHhh-hcCCCCccceeeeeeeEEEeeCCCCCccccccc
Q psy9141         138 -------------------NSETKITDNQLIIGADGAYSGVRKCLM-KQSMFNYSQTYIEHGYMELCIPPSEDNEVWLYK  197 (379)
Q Consensus       138 -------------------G~~~~~i~adlVV~AdG~~S~vr~~l~-~~~~~~~~~~~i~~~~~~~~~p~~~~~~~~~~p  197 (379)
                                         |++   ++||+||+|||.+|.+|+++. .....++.+.++.........|.         +
T Consensus       184 ~~~~f~~~~~~~~~~~~~~g~~---~~AdLvVgADG~~S~vR~~l~~~~~~~~~~s~~~g~~~~~~~lp~---------~  251 (567)
T PTZ00367        184 PENPFREDPPSANPSATTVRKV---ATAPLVVMCDGGMSKFKSRYQHYTPASENHSHFVGLVLKNVRLPK---------E  251 (567)
T ss_pred             cccccccccccccccccccceE---EEeCEEEECCCcchHHHHHccCCCCCcCcceEEEEEEEecccCCC---------C
Confidence                               334   999999999999999999983 33334444443322112222222         1


Q ss_pred             cceeeecCCCCeEEEEEecCCCcee---eecCCCCC--CChhhhcccc---c-------cc-cccc--CCcccCCCcccc
Q psy9141         198 NRLLSSVPEVRKRISLRAQSLKSLM---NFPRADQG--GDKRDCLLHE---G-------TS-RILV--PNMRLSNHLDRD  259 (379)
Q Consensus       198 ~~~~~~~p~~~~~~~~~~~~~~~~~---~~p~~~~~--~~~~~~l~~~---g-------~~-~~~~--~~~~~~~~~~~~  259 (379)
                      ...+.++.+. ..+.++|...++..   .++.....  .+..+.+.+.   .       .+ ..+.  +.+...  ....
T Consensus       252 ~~~~v~~g~~-gpi~~yPl~~~~~r~lv~~~~~~~p~~~~~~~~l~~~~~p~l~~~l~~~f~~~l~~~~~l~~~--p~~~  328 (567)
T PTZ00367        252 QHGTVFLGKT-GPILSYRLDDNELRVLVDYNKPTLPSLEEQSEWLIEDVAPHLPENMRESFIRASKDTKRIRSM--PNAR  328 (567)
T ss_pred             CeeEEEEcCC-ceEEEEEcCCCeEEEEEEecCCcCCChHHHHHHHHHhhcccCcHHHHHHHHHhhcccCCeEEe--eHhh
Confidence            2222233222 34556665544432   22222111  0111111110   0       00 0000  000000  1111


Q ss_pred             CCCCCccccCCcEEEe-eecccCCCcchhhhhHHHHHHHHHHhhcc
Q psy9141         260 QPCKPLLDFKNPIKIQ-SHAVVNEFYKQESLIVASLCQEKIEKMFD  304 (379)
Q Consensus       260 ~~~~~~~~~~~~~liG-Ah~~~~P~~GQG~n~gl~Da~~L~~~l~~  304 (379)
                      .|..+|. ..++++|| |++++||++|||+|+||+||..|+++|..
T Consensus       329 ~p~~~~~-~~gvvLIGDAAH~mhP~~GQGmn~AleDA~~La~~L~~  373 (567)
T PTZ00367        329 YPPAFPS-IKGYVGIGDHANQRHPLTGGGMTCCFSDCIRLAKSLTG  373 (567)
T ss_pred             CCCccCC-CCCEEEEEcccCCCCCcccccHHHHHHHHHHHHHHHHh
Confidence            2222333 34899999 55556699999999999999999999863

>PRK08132 FAD-dependent oxidoreductase; Provisional

Probab=99.97  E-value=2.7e-29  Score=256.40  Aligned_cols=164  Identities=19%  Similarity=0.350  Sum_probs=120.7

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceee
Q psy9141           4 NSKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRAR   83 (379)
Q Consensus         4 m~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~   83 (379)
                      ...+||+||||||+||++|+.|+++|++|+||||.+.....    ++++  +++++++++|+++|+++++.+.+.+....
T Consensus        21 ~~~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~~~~~~----~ra~--~l~~~~~~~l~~lGl~~~l~~~~~~~~~~   94 (547)
T PRK08132         21 PARHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDTLSTG----SRAI--CFAKRSLEIFDRLGCGERMVDKGVSWNVG   94 (547)
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCCCC----CeEE--EEcHHHHHHHHHcCCcHHHHhhCceeece
Confidence            35689999999999999999999999999999999865433    5665  68999999999999999988776655443


Q ss_pred             EEEecCCcEEEeeCC----C----C--CcH--------HHHhcCCCCeEEeCceEEEEEecCCeEEEEEcc-CCceeEEE
Q psy9141          84 MIHGQNGKLREIPYD----P----V--HNQ--------VELEQYPDCNIYFQHKLINLDVNSGNVTFYRTE-DNSETKIT  144 (379)
Q Consensus        84 ~~~~~~g~~~~~~~~----~----~--~~~--------~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~-~G~~~~~i  144 (379)
                      .++..++....+.+.    .    .  ..+        +.+.+.+++++++++++++++.+++++++++.. +|+ .+ +
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~v~v~~~~~~g~-~~-i  172 (547)
T PRK08132         95 KVFLRDEEVYRFDLLPEPGHRRPAFINLQQYYVEGYLVERAQALPNIDLRWKNKVTGLEQHDDGVTLTVETPDGP-YT-L  172 (547)
T ss_pred             eEEeCCCeEEEecCCCCCCCCCCceEecCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEEcCCEEEEEEECCCCc-EE-E
Confidence            344333322222111    0    0  122        234455689999999999999998888776541 443 24 8


Q ss_pred             eecEEEecCCCChHHHHHh-hhcCCCCcccee
Q psy9141         145 DNQLIIGADGAYSGVRKCL-MKQSMFNYSQTY  175 (379)
Q Consensus       145 ~adlVV~AdG~~S~vr~~l-~~~~~~~~~~~~  175 (379)
                      +||+||+|||.+|.+|+.+ +...+..+...+
T Consensus       173 ~ad~vVgADG~~S~vR~~lg~~~~g~~~~~~~  204 (547)
T PRK08132        173 EADWVIACDGARSPLREMLGLEFEGRTFEDRF  204 (547)
T ss_pred             EeCEEEECCCCCcHHHHHcCCCCCCccccceE
Confidence            9999999999999999988 555555554443

>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family

Probab=99.97  E-value=1.5e-29  Score=247.13  Aligned_cols=279  Identities=18%  Similarity=0.186  Sum_probs=169.4

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCC-CCCCCcccccccCHHHHHHHHHCCChHHHHh-CCCCceeeEE
Q psy9141           8 SVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNS-GLSEGKSINLALSVRGREALRRIGLEDKLLA-HGIPMRARMI   85 (379)
Q Consensus         8 dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~-~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~-~~~~~~~~~~   85 (379)
                      ||+||||||+|+++|+.|++.|++|+|+||.+.+... ..++++++  .+++++.+.|+++|+++++.+ .+.+.....+
T Consensus         1 dViIvGaG~aGl~~A~~L~~~G~~v~v~Er~~~~~~~~~~~~~~~~--~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~   78 (385)
T TIGR01988         1 DIVIVGGGMVGLALALALARSGLKIALIEATPAEAAATPGFDNRVS--ALSAASIRLLEKLGVWDKIEPDRAQPIRDIHV   78 (385)
T ss_pred             CEEEECCCHHHHHHHHHHhcCCCEEEEEeCCCccccCCCCCCccee--ecCHHHHHHHHHCCchhhhhhhcCCCceEEEE
Confidence            7999999999999999999999999999999976533 22345665  689999999999999999987 6777777777


Q ss_pred             EecCCcE-EEeeCC---CC-----CcH--------HHHhcCCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecE
Q psy9141          86 HGQNGKL-REIPYD---PV-----HNQ--------VELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQL  148 (379)
Q Consensus        86 ~~~~g~~-~~~~~~---~~-----~~~--------~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adl  148 (379)
                      ++..+.. ..++..   ..     ..+        +.+.+..+++++++++|++++.+++++++++. +|++   +++|+
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~~~v~~~~~v~~i~~~~~~~~v~~~-~g~~---~~~~~  154 (385)
T TIGR01988        79 SDGGSFGALHFDADEIGLEALGYVVENRVLQQALWERLQEYPNVTLLCPARVVELPRHSDHVELTLD-DGQQ---LRARL  154 (385)
T ss_pred             EeCCCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcEEecCCeEEEEEecCCeeEEEEC-CCCE---EEeeE
Confidence            7655432 111110   00     111        23344445999999999999998889999888 8887   99999


Q ss_pred             EEecCCCChHHHHHh-hhcCCCCccceeeeeeeEEEeeCCCCCccccccccceeeecCCCCeEEEEEecCCCce--ee-e
Q psy9141         149 IIGADGAYSGVRKCL-MKQSMFNYSQTYIEHGYMELCIPPSEDNEVWLYKNRLLSSVPEVRKRISLRAQSLKSL--MN-F  224 (379)
Q Consensus       149 VV~AdG~~S~vr~~l-~~~~~~~~~~~~i~~~~~~~~~p~~~~~~~~~~p~~~~~~~p~~~~~~~~~~~~~~~~--~~-~  224 (379)
                      ||+|||.+|.+|+.+ +......+....+.. ......+.   ....     .....+..  .+.+.|...+..  .. +
T Consensus       155 vi~adG~~S~vr~~l~~~~~~~~~~~~~~~~-~~~~~~~~---~~~~-----~~~~~~~g--~~~~~p~~~~~~~~~~~~  223 (385)
T TIGR01988       155 LVGADGANSKVRQLAGIPTTGWDYGQSAVVA-NVKHERPH---QGTA-----WERFTPTG--PLALLPLPDNRSSLVWTL  223 (385)
T ss_pred             EEEeCCCCCHHHHHcCCCccccccCCeEEEE-EEEecCCC---CCEE-----EEEecCCC--CEEEeECCCCCeEEEEEC
Confidence            999999999999988 444444554443311 11111111   0000     00111211  233344433321  11 1


Q ss_pred             cCCC------C-CCChhhhcccc--cccccccCCcccCCCccccCCCCCccccCCcEEEe-eecccCCCcchhhhhHHHH
Q psy9141         225 PRAD------Q-GGDKRDCLLHE--GTSRILVPNMRLSNHLDRDQPCKPLLDFKNPIKIQ-SHAVVNEFYKQESLIVASL  294 (379)
Q Consensus       225 p~~~------~-~~~~~~~l~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liG-Ah~~~~P~~GQG~n~gl~D  294 (379)
                      +.+.      . .++..+.+.+.  ++...+...-..........++.+|. ..+++++| |++.++|+.|||+|+|++|
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~LiGDAah~~~P~~G~G~~~Ai~d  302 (385)
T TIGR01988       224 PPEEAERLLALSDEEFLAELQRAFGSRLGAITLVGERHAFPLSLTHAKRYV-APRLALIGDAAHTIHPLAGQGLNLGLRD  302 (385)
T ss_pred             CHHHHHHHHcCCHHHHHHHHHHHHhhhcCceEeccCcceeechhhhhhhee-cCceEEEecccccCCccccchhhhhHHH
Confidence            1100      0 01111111111  00000000000000011112334454 35899999 4444559999999999999


Q ss_pred             HHHHHHhhcc
Q psy9141         295 CQEKIEKMFD  304 (379)
Q Consensus       295 a~~L~~~l~~  304 (379)
                      +..|+++|.+
T Consensus       303 a~~La~~L~~  312 (385)
T TIGR01988       303 VAALAEVLED  312 (385)
T ss_pred             HHHHHHHHHH
Confidence            9999999865

This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki

>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase

Probab=99.97  E-value=6.4e-29  Score=243.45  Aligned_cols=152  Identities=16%  Similarity=0.187  Sum_probs=110.0

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeEEE
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARMIH   86 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~   86 (379)
                      +||+||||||+|+++|+.|++.|++|+||||.+.....  ...++.  .++++++++|+++|+|+++...+.+.....++
T Consensus         3 ~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~--~~~~a~--~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~   78 (390)
T TIGR02360         3 TQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSRDYVL--GRIRAG--VLEQGTVDLLREAGVDERMDREGLVHEGTEIA   78 (390)
T ss_pred             ceEEEECccHHHHHHHHHHHHCCCCEEEEECCCCcccC--CceeEe--eECHHHHHHHHHCCChHHHHhcCceecceEEe
Confidence            79999999999999999999999999999999853211  112222  47899999999999999998877777777666


Q ss_pred             ecCCcEEEeeCCCC--------CcH-------HHHhcCCCCeEEeCceEEEEEe-cCCeEEEEEccCCceeEEEeecEEE
Q psy9141          87 GQNGKLREIPYDPV--------HNQ-------VELEQYPDCNIYFQHKLINLDV-NSGNVTFYRTEDNSETKITDNQLII  150 (379)
Q Consensus        87 ~~~g~~~~~~~~~~--------~~~-------~~~~~~~gv~i~~~~~v~~i~~-~~~~v~v~~~~~G~~~~~i~adlVV  150 (379)
                      +.. .....++...        .++       .......++.++++++++.+.. +++.+.|++..+|+..+ ++||+||
T Consensus        79 ~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~~~~~~~v~~~~~~~~~~~V~~~~~g~~~~-i~adlvI  156 (390)
T TIGR02360        79 FDG-QRFRIDLKALTGGKTVMVYGQTEVTRDLMEAREAAGLTTVYDADDVRLHDLAGDRPYVTFERDGERHR-LDCDFIA  156 (390)
T ss_pred             eCC-EEEEEeccccCCCceEEEeCHHHHHHHHHHHHHhcCCeEEEeeeeEEEEecCCCccEEEEEECCeEEE-EEeCEEE
Confidence            533 2333333211        111       1112234789999998888755 45555666532676445 9999999


Q ss_pred             ecCCCChHHHHHhh
Q psy9141         151 GADGAYSGVRKCLM  164 (379)
Q Consensus       151 ~AdG~~S~vr~~l~  164 (379)
                      +|||.+|.+|+++.
T Consensus       157 GADG~~S~VR~~l~  170 (390)
T TIGR02360       157 GCDGFHGVSRASIP  170 (390)
T ss_pred             ECCCCchhhHHhcC
Confidence            99999999999973

Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.

>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=99.97  E-value=1.1e-29  Score=249.22  Aligned_cols=320  Identities=18%  Similarity=0.167  Sum_probs=184.4

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHhC---CCcEEEEccCCCCC-CCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCC
Q psy9141           4 NSKKSVVIVGGGLVGSLSACMFAKN---QYEVNLYEAREDIR-NSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIP   79 (379)
Q Consensus         4 m~~~dVvIVGaGpaGl~~A~~La~~---G~~V~viE~~~~~~-~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~   79 (379)
                      |+.+||+||||||+|+++|+.|+++   |++|+||||..... ..+..+++++  .+.+++.++|+++|+|+.+.+.+.+
T Consensus         1 m~~~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~~~~~~~~~~~~~~~~--~l~~~~~~~l~~lgl~~~~~~~~~~   78 (395)
T PRK05732          1 MSRMDVIIVGGGMAGATLALALSRLSHGGLPVALIEAFAPESDAHPGFDARAI--ALAAGTCQQLARLGVWQALADCATP   78 (395)
T ss_pred             CCcCCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCCCcccccCCCCCccce--eccHHHHHHHHHCCChhhhHhhcCC
Confidence            4568999999999999999999998   99999999964222 2223345665  6889999999999999999887777


Q ss_pred             ceeeEEEecCCcE-EEe---eCCCC-----CcH--------HHHhcCCCCeEEeCceEEEEEecCCeEEEEEccCCceeE
Q psy9141          80 MRARMIHGQNGKL-REI---PYDPV-----HNQ--------VELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETK  142 (379)
Q Consensus        80 ~~~~~~~~~~g~~-~~~---~~~~~-----~~~--------~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~  142 (379)
                      .....+.+..... ..+   .+...     ..+        ..+.+.++++++++++|+++..+++++++++. +|.+  
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~g~~~~~~~~v~~i~~~~~~~~v~~~-~g~~--  155 (395)
T PRK05732         79 ITHIHVSDRGHAGFVRLDAEDYGVPALGYVVELHDVGQRLFALLDKAPGVTLHCPARVANVERTQGSVRVTLD-DGET--  155 (395)
T ss_pred             ccEEEEecCCCCceEEeehhhcCCCccEEEEEhHHHHHHHHHHHhcCCCcEEEcCCEEEEEEEcCCeEEEEEC-CCCE--
Confidence            6665554322111 011   11111     011        23345578999999999999988889999888 8876  


Q ss_pred             EEeecEEEecCCCChHHHHHh-hhcCCCCccceeeeeeeEEEeeCCCCCccccccccceeeecCCCCeEEEEEecCCCce
Q psy9141         143 ITDNQLIIGADGAYSGVRKCL-MKQSMFNYSQTYIEHGYMELCIPPSEDNEVWLYKNRLLSSVPEVRKRISLRAQSLKSL  221 (379)
Q Consensus       143 ~i~adlVV~AdG~~S~vr~~l-~~~~~~~~~~~~i~~~~~~~~~p~~~~~~~~~~p~~~~~~~p~~~~~~~~~~~~~~~~  221 (379)
                       +++|+||+|||.+|.+|+.+ +......+++.++. ....  ......+. .     ...+.+..  .+.+.|...+..
T Consensus       156 -~~a~~vI~AdG~~S~vr~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~-~-----~~~~~~~g--~~~~~p~~~g~~  223 (395)
T PRK05732        156 -LTGRLLVAADGSHSALREALGIDWQQHPYEQVAVI-ANVT--TSEAHQGR-A-----FERFTEHG--PLALLPMSDGRC  223 (395)
T ss_pred             -EEeCEEEEecCCChhhHHhhCCCccceecCCEEEE-EEEE--ecCCCCCE-E-----EEeecCCC--CEEEeECCCCCe
Confidence             99999999999999999987 44333444443321 1111  11000010 0     00011111  122333332322


Q ss_pred             --e-eecCCC------CC-CChhhhcccc-cccccccCCccc----CCCccccCCCCCccccCCcEEEe-eecccCCCcc
Q psy9141         222 --M-NFPRAD------QG-GDKRDCLLHE-GTSRILVPNMRL----SNHLDRDQPCKPLLDFKNPIKIQ-SHAVVNEFYK  285 (379)
Q Consensus       222 --~-~~p~~~------~~-~~~~~~l~~~-g~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~liG-Ah~~~~P~~G  285 (379)
                        + .+|.+.      .. ....+.+... ++ .  ...+..    ...........+|. ..+++++| |++.++|+.|
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~l~~~~~~~~~-~grv~LvGDAAh~~~P~~G  299 (395)
T PRK05732        224 SLVWCHPLEDAEEVLSWSDAQFLAELQQAFGW-R--LGRITHAGKRSAYPLALVTAAQQI-SHRLALVGNAAQTLHPIAG  299 (395)
T ss_pred             EEEEECCHHHHHHHHcCCHHHHHHHHHHHHHh-h--hcceeecCCcceecccccchhhhc-cCcEEEEeecccccCCccc
Confidence              1 112110      00 0011111110 11 0  001100    00011112234454 35899999 4444559999


Q ss_pred             hhhhhHHHHHHHHHHhhcc------------ccccccccc-------hhhhhheeeeEEeeecccccchhhHHHHHHhhh
Q psy9141         286 QESLIVASLCQEKIEKMFD------------NTSTYKSRH-------INFIHRSYHLYTVDIGVHKVTESSILNLLLRGM  346 (379)
Q Consensus       286 QG~n~gl~Da~~L~~~l~~------------~~~~~~~~~-------~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~  346 (379)
                      ||+|+|++|+..|+++|..            .++.|++++       +..++.+.++|..+.++.+    .+-|+++.-+
T Consensus       300 qG~~~al~Da~~La~~L~~~~~~~~~~~~~~~l~~Y~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~----~~r~~~~~~~  375 (395)
T PRK05732        300 QGFNLGLRDVMSLAETLTQALARGEDIGDYAVLQRYQQRRQQDREATIGFTDGLVRLFANRWAPLV----VGRNLGLMAM  375 (395)
T ss_pred             cccchHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHH----HHHHHHHHHH
Confidence            9999999999999999842            344577665       3344455556755444322    4455555444


Q ss_pred             hc
Q psy9141         347 KK  348 (379)
Q Consensus       347 ~~  348 (379)
                      .+
T Consensus       376 ~~  377 (395)
T PRK05732        376 DL  377 (395)
T ss_pred             cc
Confidence            33

>PRK08163 salicylate hydroxylase; Provisional

Probab=99.97  E-value=5.8e-29  Score=244.24  Aligned_cols=321  Identities=17%  Similarity=0.223  Sum_probs=188.7

Q ss_pred             CCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeE
Q psy9141           5 SKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARM   84 (379)
Q Consensus         5 ~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~   84 (379)
                      ++.||+||||||+|+++|+.|++.|++|+|+||.+.....    |+++  .+++++.++|+++|+++.+.+.+.+.....
T Consensus         3 ~~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~~~~~----g~gi--~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~   76 (396)
T PRK08163          3 KVTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAEIGEI----GAGI--QLGPNAFSALDALGVGEAARQRAVFTDHLT   76 (396)
T ss_pred             CCCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCcccccc----ccee--eeCchHHHHHHHcCChHHHHhhccCCcceE
Confidence            4579999999999999999999999999999999876543    6666  689999999999999999887776666666


Q ss_pred             EEec-CCcE-EEeeCC--------CC---CcH--------HHHhcCCCCeEEeCceEEEEEecCCeEEEEEccCCceeEE
Q psy9141          85 IHGQ-NGKL-REIPYD--------PV---HNQ--------VELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKI  143 (379)
Q Consensus        85 ~~~~-~g~~-~~~~~~--------~~---~~~--------~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~  143 (379)
                      +++. ++.. ...++.        ..   ..+        +.+.+..++++++++++++++.+++++++++. +|++   
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~v~v~~~-~g~~---  152 (396)
T PRK08163         77 MMDAVDAEEVVRIPTGQAFRARFGNPYAVIHRADIHLSLLEAVLDHPLVEFRTSTHVVGIEQDGDGVTVFDQ-QGNR---  152 (396)
T ss_pred             EEeCCCCCEEEEeccchhHHHhcCCcEEEEEHHHHHHHHHHHHHhcCCcEEEeCCEEEEEecCCCceEEEEc-CCCE---
Confidence            6653 2332 222211        10   011        23334456999999999999988888998888 8877   


Q ss_pred             EeecEEEecCCCChHHHHHhhhcCCCCccceeeeeeeEEEeeCCCCCccccccccceeeecCCCCeEEEEEecCCCceee
Q psy9141         144 TDNQLIIGADGAYSGVRKCLMKQSMFNYSQTYIEHGYMELCIPPSEDNEVWLYKNRLLSSVPEVRKRISLRAQSLKSLMN  223 (379)
Q Consensus       144 i~adlVV~AdG~~S~vr~~l~~~~~~~~~~~~i~~~~~~~~~p~~~~~~~~~~p~~~~~~~p~~~~~~~~~~~~~~~~~~  223 (379)
                      ++||+||+|||.+|.+|+.+.+.. ..+...............+   .....  .....+.... ..++.+|...+..++
T Consensus       153 ~~ad~vV~AdG~~S~~r~~~~g~~-~~~~g~~~~~~~~~~~~~~---~~~~~--~~~~~~~g~~-~~~~~~p~~~g~~~~  225 (396)
T PRK08163        153 WTGDALIGCDGVKSVVRQSLVGDA-PRVTGHVVYRAVIDVDDMP---EDLRI--NAPVLWAGPH-CHLVHYPLRGGEQYN  225 (396)
T ss_pred             EecCEEEECCCcChHHHhhccCCC-CCccccEEEEEEEeHHHCc---chhcc--CccEEEEcCC-ceEEEEEecCCeEEE
Confidence            999999999999999999874332 2222221111111110000   00000  0011111111 233444443333221


Q ss_pred             ----ecCCCC-----CCChhhhcccc--ccc---ccccCCccc-C-CCccccCCCCCccccCCcEEEe--eecccCCCcc
Q psy9141         224 ----FPRADQ-----GGDKRDCLLHE--GTS---RILVPNMRL-S-NHLDRDQPCKPLLDFKNPIKIQ--SHAVVNEFYK  285 (379)
Q Consensus       224 ----~p~~~~-----~~~~~~~l~~~--g~~---~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~liG--Ah~~~~P~~G  285 (379)
                          ++.+..     .....+.+.+.  ++.   ..+...... . .......++..|. ..|++|+|  ||+|. |+.|
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~grv~LiGDAAH~~~-P~~G  303 (396)
T PRK08163        226 LVVTFHSREQEEWGVKDGSKEEVLSYFEGIHPRPRQMLDKPTSWKRWATADREPVAKWS-TGRVTLLGDAAHPMT-QYMA  303 (396)
T ss_pred             EEEEECCCCCcccccCCCCHHHHHHHHcCCChHHHHHHhcCCceeEccccCCCcccccc-cCcEEEEecccccCC-cchh
Confidence                111110     00011111111  110   000000000 0 0011223455665 35899999  66665 9999


Q ss_pred             hhhhhHHHHHHHHHHhhcc-------ccccccccchhhhhhee-------eeEEeeecccccchhhHHHHHHhhhhcc
Q psy9141         286 QESLIVASLCQEKIEKMFD-------NTSTYKSRHINFIHRSY-------HLYTVDIGVHKVTESSILNLLLRGMKKN  349 (379)
Q Consensus       286 QG~n~gl~Da~~L~~~l~~-------~~~~~~~~~~~~~~~~~-------~~~t~~~~~~~~~~~~~~~~~~~~~~~~  349 (379)
                      ||+|+|++||..|+++|..       .+..|+++++.-+..+.       ++|..+ .    .+..+.|.++....+.
T Consensus       304 qG~n~ai~Da~~La~~L~~~~~~~~~al~~y~~~R~~r~~~~~~~s~~~~~~~~~~-~----~~~~~r~~~~~~~~~~  376 (396)
T PRK08163        304 QGACMALEDAVTLGKALEGCDGDAEAAFALYESVRIPRTARVVLSAREMGRIYHAK-G----VERQVRNLLWKGRTQE  376 (396)
T ss_pred             ccHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhCCC-C----HHHHHHHHHhhccChh
Confidence            9999999999999999853       34567766644443333       244322 1    2456667666655433

>PRK06847 hypothetical protein; Provisional

Probab=99.97  E-value=7.7e-29  Score=241.57  Aligned_cols=290  Identities=20%  Similarity=0.245  Sum_probs=176.7

Q ss_pred             CCCCCCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCc
Q psy9141           1 MKCNSKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPM   80 (379)
Q Consensus         1 M~~m~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~   80 (379)
                      |..  ..||+||||||+||++|+.|++.|++|+|+|+++.+...    |.++  .+++++.++|+++|+++.+.+.+.+.
T Consensus         1 m~~--~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~----g~g~--~l~~~~~~~l~~~gl~~~~~~~~~~~   72 (375)
T PRK06847          1 MAA--VKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPEWRVY----GAGI--TLQGNALRALRELGVLDECLEAGFGF   72 (375)
T ss_pred             CCC--cceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCccC----Ccee--eecHHHHHHHHHcCCHHHHHHhCCCc
Confidence            553  469999999999999999999999999999999866543    6665  68899999999999999998887788


Q ss_pred             eeeEEEecCCcEE-EeeC--------C--CCCcH-------HHHhcCCCCeEEeCceEEEEEecCCeEEEEEccCCceeE
Q psy9141          81 RARMIHGQNGKLR-EIPY--------D--PVHNQ-------VELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETK  142 (379)
Q Consensus        81 ~~~~~~~~~g~~~-~~~~--------~--~~~~~-------~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~  142 (379)
                      ....+++..|... ..+.        .  ....+       .......+++++++++|++++.+++++++.+. +|++  
T Consensus        73 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~~~v~~~-~g~~--  149 (375)
T PRK06847         73 DGVDLFDPDGTLLAELPTPRLAGDDLPGGGGIMRPALARILADAARAAGADVRLGTTVTAIEQDDDGVTVTFS-DGTT--  149 (375)
T ss_pred             cceEEECCCCCEEEecCcccccccCCCCcccCcHHHHHHHHHHHHHHhCCEEEeCCEEEEEEEcCCEEEEEEc-CCCE--
Confidence            7777777666532 1111        1  01111       12223358999999999999988888888888 8887  


Q ss_pred             EEeecEEEecCCCChHHHHHhhhc-CCCCccceeeeeeeEEEeeCCCCCccccccccceeeecCCCCeEEEEEecCCCce
Q psy9141         143 ITDNQLIIGADGAYSGVRKCLMKQ-SMFNYSQTYIEHGYMELCIPPSEDNEVWLYKNRLLSSVPEVRKRISLRAQSLKSL  221 (379)
Q Consensus       143 ~i~adlVV~AdG~~S~vr~~l~~~-~~~~~~~~~i~~~~~~~~~p~~~~~~~~~~p~~~~~~~p~~~~~~~~~~~~~~~~  221 (379)
                       +++|+||+|||.+|.+|+.+.+. ....|....    ++....|....    +.  ....+.... ..+.++|...+..
T Consensus       150 -~~ad~vI~AdG~~s~~r~~l~~~~~~~~~~g~~----~~~~~~~~~~~----~~--~~~~~~~~~-~~~~~~p~~~~~~  217 (375)
T PRK06847        150 -GRYDLVVGADGLYSKVRSLVFPDEPEPEYTGQG----VWRAVLPRPAE----VD--RSLMYLGPT-TKAGVVPLSEDLM  217 (375)
T ss_pred             -EEcCEEEECcCCCcchhhHhcCCCCCceeccce----EEEEEecCCCC----cc--ceEEEeCCC-cEEEEEcCCCCeE
Confidence             99999999999999999988432 222232221    12222221110    00  011122111 2334444443333


Q ss_pred             eee---cCCCCC---C-Chhhhcccc--cc----cccccCCcccCC----Cc-cccCCCCCccccCCcEEEe--eecccC
Q psy9141         222 MNF---PRADQG---G-DKRDCLLHE--GT----SRILVPNMRLSN----HL-DRDQPCKPLLDFKNPIKIQ--SHAVVN  281 (379)
Q Consensus       222 ~~~---p~~~~~---~-~~~~~l~~~--g~----~~~~~~~~~~~~----~~-~~~~~~~~~~~~~~~~liG--Ah~~~~  281 (379)
                      +.+   +.+...   . +..+.+.+.  .+    ...+...+....    .. .......+|. ..|++|+|  ||++. 
T Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~grv~LiGDAaH~~~-  295 (375)
T PRK06847        218 YLFVTEPRPDNPRIEPDTLAALLRELLAPFGGPVLQELREQITDDAQVVYRPLETLLVPAPWH-RGRVVLIGDAAHATT-  295 (375)
T ss_pred             EEEEeccCcccccCChHHHHHHHHHHHhhcCchHHHHHHHhcCCccceeeccHhhccCCCCcc-CCeEEEEechhccCC-
Confidence            222   111100   0 001111110  00    000000000000    00 0111234565 45899999  66665 


Q ss_pred             CCcchhhhhHHHHHHHHHHhhcc------ccccccccchh
Q psy9141         282 EFYKQESLIVASLCQEKIEKMFD------NTSTYKSRHIN  315 (379)
Q Consensus       282 P~~GQG~n~gl~Da~~L~~~l~~------~~~~~~~~~~~  315 (379)
                      |+.|||+|+|++||..|+++|.+      .++.|++++..
T Consensus       296 P~~GqG~n~aieDA~~La~~L~~~~~~~~al~~Y~~~R~~  335 (375)
T PRK06847        296 PHLAQGAGMAIEDAIVLAEELARHDSLEAALQAYYARRWE  335 (375)
T ss_pred             CCccccHHHHHHHHHHHHHHHhhCCcHHHHHHHHHHHHHH
Confidence            99999999999999999999964      33356655533

>PRK07538 hypothetical protein; Provisional

Probab=99.96  E-value=4.1e-28  Score=239.59  Aligned_cols=159  Identities=24%  Similarity=0.329  Sum_probs=117.1

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeEEEe
Q psy9141           8 SVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARMIHG   87 (379)
Q Consensus         8 dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~   87 (379)
                      ||+||||||+||++|+.|+++|++|+|+||.+.....    |.++  .++++++++|+++|+++.+...+.+.....+++
T Consensus         2 dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~----g~gi--~l~p~~~~~L~~lgl~~~l~~~~~~~~~~~~~~   75 (413)
T PRK07538          2 KVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPELRPL----GVGI--NLLPHAVRELAELGLLDALDAIGIRTRELAYFN   75 (413)
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCccccc----Ccce--eeCchHHHHHHHCCCHHHHHhhCCCCcceEEEc
Confidence            8999999999999999999999999999999866533    6666  678999999999999999887777777777776


Q ss_pred             cCCcEEE-ee------CCCC---CcH--------HHHhcC-CCCeEEeCceEEEEEecCCeEEEEEcc--CCceeEEEee
Q psy9141          88 QNGKLRE-IP------YDPV---HNQ--------VELEQY-PDCNIYFQHKLINLDVNSGNVTFYRTE--DNSETKITDN  146 (379)
Q Consensus        88 ~~g~~~~-~~------~~~~---~~~--------~~~~~~-~gv~i~~~~~v~~i~~~~~~v~v~~~~--~G~~~~~i~a  146 (379)
                      ..|.... .+      +...   ..+        ..+.+. ...+|+++++|++++.+++++.+.+.+  +|+..+ ++|
T Consensus        76 ~~g~~~~~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~g~~~i~~~~~v~~~~~~~~~~~~~~~~~~~g~~~~-~~a  154 (413)
T PRK07538         76 RHGQRIWSEPRGLAAGYDWPQYSIHRGELQMLLLDAVRERLGPDAVRTGHRVVGFEQDADVTVVFLGDRAGGDLVS-VRG  154 (413)
T ss_pred             CCCCEEeeccCCcccCCCCceEEEEHHHHHHHHHHHHHhhcCCcEEEcCCEEEEEEecCCceEEEEeccCCCccce-EEe
Confidence            6554321 11      1111   111        122232 335799999999999888876666541  233334 999


Q ss_pred             cEEEecCCCChHHHHHhhhcC-CCCccc
Q psy9141         147 QLIIGADGAYSGVRKCLMKQS-MFNYSQ  173 (379)
Q Consensus       147 dlVV~AdG~~S~vr~~l~~~~-~~~~~~  173 (379)
                      |+||+|||.+|.+|+++.+.. ...|..
T Consensus       155 dlvIgADG~~S~vR~~l~~~~~~~~~~g  182 (413)
T PRK07538        155 DVLIGADGIHSAVRAQLYPDEGPPRWNG  182 (413)
T ss_pred             eEEEECCCCCHHHhhhhcCCCCCCcccc
Confidence            999999999999999984322 344443

>PLN02985 squalene monooxygenase

Probab=99.96  E-value=2.7e-28  Score=245.74  Aligned_cols=276  Identities=17%  Similarity=0.152  Sum_probs=160.8

Q ss_pred             CCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhC-CCCceee
Q psy9141           5 SKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAH-GIPMRAR   83 (379)
Q Consensus         5 ~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~-~~~~~~~   83 (379)
                      ..+||+||||||+|+++|+.|++.|++|+|+||++.....    +.++  .+++++.++|+++|+++.+... ..+..++
T Consensus        42 ~~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~~~~~~----~~g~--~L~p~g~~~L~~LGl~d~l~~~~~~~~~~~  115 (514)
T PLN02985         42 GATDVIIVGAGVGGSALAYALAKDGRRVHVIERDLREPER----MMGE--FMQPGGRFMLSKLGLEDCLEGIDAQKATGM  115 (514)
T ss_pred             CCceEEEECCCHHHHHHHHHHHHcCCeEEEEECcCCCCcc----cccc--ccCchHHHHHHHcCCcchhhhccCcccccE
Confidence            4689999999999999999999999999999998643221    2333  6889999999999999988764 4566666


Q ss_pred             EEEecCCcEEEeeCCCC------------CcH--------HHHhcCCCCeEEeCceEEEEEecCCe---EEEEEccCCce
Q psy9141          84 MIHGQNGKLREIPYDPV------------HNQ--------VELEQYPDCNIYFQHKLINLDVNSGN---VTFYRTEDNSE  140 (379)
Q Consensus        84 ~~~~~~g~~~~~~~~~~------------~~~--------~~~~~~~gv~i~~~~~v~~i~~~~~~---v~v~~~~~G~~  140 (379)
                      .++. +|+....+|...            ..+        +.+.+.++++++.+ +++++..+++.   +++... +|++
T Consensus       116 ~v~~-~g~~~~~~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~a~~~~~V~i~~g-tvv~li~~~~~v~gV~~~~~-dG~~  192 (514)
T PLN02985        116 AVYK-DGKEAVAPFPVDNNNFPYEPSARSFHNGRFVQRLRQKASSLPNVRLEEG-TVKSLIEEKGVIKGVTYKNS-AGEE  192 (514)
T ss_pred             EEEE-CCEEEEEeCCCCCcCCCcccceeeeecHHHHHHHHHHHHhCCCeEEEee-eEEEEEEcCCEEEEEEEEcC-CCCE
Confidence            6665 444323333210            011        33445578999876 57776655553   444455 7776


Q ss_pred             eEEEeecEEEecCCCChHHHHHhhhcCCCCccceeeeeeeEEEeeCCCCCccccccccceeeecCCCCeEEEEEecCCCc
Q psy9141         141 TKITDNQLIIGADGAYSGVRKCLMKQSMFNYSQTYIEHGYMELCIPPSEDNEVWLYKNRLLSSVPEVRKRISLRAQSLKS  220 (379)
Q Consensus       141 ~~~i~adlVV~AdG~~S~vr~~l~~~~~~~~~~~~i~~~~~~~~~p~~~~~~~~~~p~~~~~~~p~~~~~~~~~~~~~~~  220 (379)
                      .+ ++||+||+|||.+|.+|+++.......++.   ..++......       ...|+..+.++++. ..+.+++...++
T Consensus       193 ~~-~~AdLVVgADG~~S~vR~~l~~~~~~~~s~---~~~~~~~~~~-------~~~~~~~~~~~~~~-~~~l~ypi~~~~  260 (514)
T PLN02985        193 TT-ALAPLTVVCDGCYSNLRRSLNDNNAEVLSY---QVGYISKNCR-------LEEPEKLHLIMSKP-SFTMLYQISSTD  260 (514)
T ss_pred             EE-EECCEEEECCCCchHHHHHhccCCCcceeE---eEEEEEcccc-------CCCCCcceEEcCCC-ceEEEEEeCCCe
Confidence            56 789999999999999999984322111110   0111111000       01223334444333 345555554444


Q ss_pred             eee---ecCCCCCC----Chhhhccc---cccccccc--------C--CcccCCCccccCCCCCccccCCcEEEe-eecc
Q psy9141         221 LMN---FPRADQGG----DKRDCLLH---EGTSRILV--------P--NMRLSNHLDRDQPCKPLLDFKNPIKIQ-SHAV  279 (379)
Q Consensus       221 ~~~---~p~~~~~~----~~~~~l~~---~g~~~~~~--------~--~~~~~~~~~~~~~~~~~~~~~~~~liG-Ah~~  279 (379)
                      ...   +|.+....    +....+.+   +.....+.        .  .....  .....+...+ ...++++|| |+++
T Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~p~~l~~~f~~~~~~~~~~~~~--p~~~l~~~~~-~~~~vvLiGDAaH~  337 (514)
T PLN02985        261 VRCVFEVLPDNIPSIANGEMSTFVKNTIAPQVPPKLRKIFLKGIDEGAHIKVV--PTKRMSATLS-DKKGVIVLGDAFNM  337 (514)
T ss_pred             EEEEEEEeCCCCCCcChhhHHHHHHhccccccCHHHHHHHHhhcccccceeec--Cccccccccc-CCCCEEEEeccccc
Confidence            332   23222111    11111110   00000000        0  00000  0011111111 234799999 6666


Q ss_pred             cCCCcchhhhhHHHHHHHHHHhhcc
Q psy9141         280 VNEFYKQESLIVASLCQEKIEKMFD  304 (379)
Q Consensus       280 ~~P~~GQG~n~gl~Da~~L~~~l~~  304 (379)
                      +||++|||||+|++||..|+++|.+
T Consensus       338 ~~P~~GQGmn~AleDA~vLa~lL~~  362 (514)
T PLN02985        338 RHPAIASGMMVLLSDILILRRLLQP  362 (514)
T ss_pred             CCCCccccHhHHHHHHHHHHHHhhh
Confidence            6699999999999999999999964

>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways

Probab=99.96  E-value=3.3e-29  Score=240.96  Aligned_cols=151  Identities=30%  Similarity=0.421  Sum_probs=106.6

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCce--eeE
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMR--ARM   84 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~--~~~   84 (379)
                      +||+||||||+|+++|+.|+++|++|+||||++.+...    ++++  .+++++.++|+++|+++.+...+.+..  ...
T Consensus         2 ~dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~~~~~----~~~~--~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~   75 (356)
T PF01494_consen    2 YDVAIVGAGPAGLAAALALARAGIDVTIIERRPDPRPK----GRGI--GLSPNSLRILQRLGLLDEILARGSPHEVMRIF   75 (356)
T ss_dssp             EEEEEE--SHHHHHHHHHHHHTTCEEEEEESSSSCCCS----SSSE--EEEHHHHHHHHHTTEHHHHHHHSEEECEEEEE
T ss_pred             ceEEEECCCHHHHHHHHHHHhcccccccchhccccccc----cccc--ccccccccccccccchhhhhhhcccccceeeE
Confidence            69999999999999999999999999999999877654    4554  688999999999999999887764332  233


Q ss_pred             EEec-CCc-------EEEeeCC----CC----CcH-------HHHhcCCCCeEEeCceEEEEEecCCeEEEEEc--cCCc
Q psy9141          85 IHGQ-NGK-------LREIPYD----PV----HNQ-------VELEQYPDCNIYFQHKLINLDVNSGNVTFYRT--EDNS  139 (379)
Q Consensus        85 ~~~~-~g~-------~~~~~~~----~~----~~~-------~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~--~~G~  139 (379)
                      ++.. .+.       .....+.    ..    ..+       ....+..++++++++++++++.+++++++.+.  .+|+
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~~~~d~~~~~~~~~~~~~g~  155 (356)
T PF01494_consen   76 FYDGISDSRIWVENPQIREDMEIDTKGPYGHVIDRPELDRALREEAEERGVDIRFGTRVVSIEQDDDGVTVVVRDGEDGE  155 (356)
T ss_dssp             EEEETTTSEEEEEEEEEEEECHSTSGSSCEEEEEHHHHHHHHHHHHHHHTEEEEESEEEEEEEEETTEEEEEEEETCTCE
T ss_pred             eecccCCccceeeecccceeeeccccCCcchhhhHHHHHHhhhhhhhhhhhhheeeeecccccccccccccccccccCCc
Confidence            3332 010       0111111    00    011       12222346999999999999999988775543  2455


Q ss_pred             eeEEEeecEEEecCCCChHHHHHhh
Q psy9141         140 ETKITDNQLIIGADGAYSGVRKCLM  164 (379)
Q Consensus       140 ~~~~i~adlVV~AdG~~S~vr~~l~  164 (379)
                      ..+ ++||+||+|||++|.+|+.+.
T Consensus       156 ~~~-i~adlvVgADG~~S~vR~~l~  179 (356)
T PF01494_consen  156 EET-IEADLVVGADGAHSKVRKQLG  179 (356)
T ss_dssp             EEE-EEESEEEE-SGTT-HHHHHTT
T ss_pred             eeE-EEEeeeecccCcccchhhhcc
Confidence            556 999999999999999999983

In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....

>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional

Probab=99.96  E-value=4e-28  Score=237.63  Aligned_cols=318  Identities=17%  Similarity=0.139  Sum_probs=183.6

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCC-CCCCcccccccCHHHHHHHHHCCChHHHHhC-CCCceee
Q psy9141           6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSG-LSEGKSINLALSVRGREALRRIGLEDKLLAH-GIPMRAR   83 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~-~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~-~~~~~~~   83 (379)
                      ++||+||||||+|+++|+.|++.|++|+|+||.+.+...+ ..+.+.+  .++++++++|+++|+++++... ..+....
T Consensus         5 ~~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~r~~--~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~   82 (388)
T PRK07608          5 KFDVVVVGGGLVGASLALALAQSGLRVALLAPRAPPRPADDAWDSRVY--AISPSSQAFLERLGVWQALDAARLAPVYDM   82 (388)
T ss_pred             cCCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCccccCCCCCCceE--eecHHHHHHHHHcCchhhhhhhcCCcceEE
Confidence            5899999999999999999999999999999998764321 1234544  6899999999999999987543 3455555


Q ss_pred             EEEecCCcEEEe-eC--CCC-----CcH--------HHHhcCCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeec
Q psy9141          84 MIHGQNGKLREI-PY--DPV-----HNQ--------VELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQ  147 (379)
Q Consensus        84 ~~~~~~g~~~~~-~~--~~~-----~~~--------~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~ad  147 (379)
                      .++........+ .+  ...     ..+        ..+.+..+++++ ++++++++.+++++.+++. +|++   ++||
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~~~-~~~v~~i~~~~~~~~v~~~-~g~~---~~a~  157 (388)
T PRK07608         83 RVFGDAHARLHFSAYQAGVPQLAWIVESSLIERALWAALRFQPNLTWF-PARAQGLEVDPDAATLTLA-DGQV---LRAD  157 (388)
T ss_pred             EEEECCCceeEeeccccCCCCCEEEEEhHHHHHHHHHHHHhCCCcEEE-cceeEEEEecCCeEEEEEC-CCCE---EEee
Confidence            555433211111 01  000     011        233444458988 9999999988888999888 8876   9999


Q ss_pred             EEEecCCCChHHHHHh-hhcCCCCccceeeeeeeEEEeeCCCCCccccccccceeeecCCCCeEEEEEecCCCceee--e
Q psy9141         148 LIIGADGAYSGVRKCL-MKQSMFNYSQTYIEHGYMELCIPPSEDNEVWLYKNRLLSSVPEVRKRISLRAQSLKSLMN--F  224 (379)
Q Consensus       148 lVV~AdG~~S~vr~~l-~~~~~~~~~~~~i~~~~~~~~~p~~~~~~~~~~p~~~~~~~p~~~~~~~~~~~~~~~~~~--~  224 (379)
                      +||+|||.+|.+|+.+ .......+.+..+..   .+..+. ..      +.....++.+. ..+.+.|...+.+..  .
T Consensus       158 ~vI~adG~~S~vr~~~~~~~~~~~~~~~~~~~---~~~~~~-~~------~~~~~~~~~~~-~~~~~~p~~~~~~~~~~~  226 (388)
T PRK07608        158 LVVGADGAHSWVRSQAGIKAERRPYRQTGVVA---NFKAER-PH------RGTAYQWFRDD-GILALLPLPDGHVSMVWS  226 (388)
T ss_pred             EEEEeCCCCchHHHhcCCCccccccCCEEEEE---EEEecC-CC------CCEEEEEecCC-CCEEEeECCCCCeEEEEE
Confidence            9999999999999988 444444444433211   111111 00      00111121111 122333433332211  1


Q ss_pred             cCCC--------CCCChhhhcccccccccccCCcccC----CCccccCCCCCccccCCcEEEe-eecccCCCcchhhhhH
Q psy9141         225 PRAD--------QGGDKRDCLLHEGTSRILVPNMRLS----NHLDRDQPCKPLLDFKNPIKIQ-SHAVVNEFYKQESLIV  291 (379)
Q Consensus       225 p~~~--------~~~~~~~~l~~~g~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~liG-Ah~~~~P~~GQG~n~g  291 (379)
                      ..+.        ..++..+.+......  ....+...    ...........|. ..+++++| |++.++|++|||+|+|
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-~~rv~liGDAAh~~~P~~GqG~n~a  303 (388)
T PRK07608        227 ARTAHADELLALSPEALAARVERASGG--RLGRLECVTPAAGFPLRLQRVDRLV-APRVALVGDAAHLIHPLAGQGMNLG  303 (388)
T ss_pred             CCHHHHHHHHCCCHHHHHHHHHHHHHH--hcCCceecCCcceeecchhhhhhhh-cCceEEEeccccccCCccccccchh
Confidence            1000        001111111110000  00111100    0011112233444 34899999 4444459999999999


Q ss_pred             HHHHHHHHHhhcc-----------ccccccccc-------hhhhhheeeeEEeeecccccchhhHHHHHHhhhhc
Q psy9141         292 ASLCQEKIEKMFD-----------NTSTYKSRH-------INFIHRSYHLYTVDIGVHKVTESSILNLLLRGMKK  348 (379)
Q Consensus       292 l~Da~~L~~~l~~-----------~~~~~~~~~-------~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~  348 (379)
                      ++|+..|+++|..           .++.|++++       +..++.+.++|..+.++.    ...-|++++-+-+
T Consensus       304 i~da~~La~~L~~~~~~~~~~~~~~l~~Ye~~R~~~~~~~~~~~~~~~~~~~~~~~~~----~~~r~~~~~~~~~  374 (388)
T PRK07608        304 LRDVAALADVLAGREPFRDLGDLRLLRRYERARREDILALQVATDGLQRLFALPGPLA----RWLRNAGMALVGA  374 (388)
T ss_pred             HHHHHHHHHHHHHhhccCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHH----HHHHHHHHHHHhh
Confidence            9999999999864           244566655       344444445676555432    3556666665544

>TIGR03219 salicylate_mono salicylate 1-monooxygenase

Probab=99.95  E-value=3.4e-27  Score=233.14  Aligned_cols=147  Identities=23%  Similarity=0.372  Sum_probs=108.1

Q ss_pred             cEEEECCChHHHHHHHHHHhCC-CcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCC----Ccee
Q psy9141           8 SVVIVGGGLVGSLSACMFAKNQ-YEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGI----PMRA   82 (379)
Q Consensus         8 dVvIVGaGpaGl~~A~~La~~G-~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~----~~~~   82 (379)
                      +|+||||||+||++|+.|+++| ++|+|+||.+.....    |.++  .+.+++.++|+++|+.+.+...+.    +...
T Consensus         2 ~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~~~~~----G~gi--~l~~~~~~~L~~lg~~~~~~~~~~~~~~~~~~   75 (414)
T TIGR03219         2 RVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPAFGEV----GAGV--SFGANAVRAIVGLGLGEAYTQVADSTPAPWQD   75 (414)
T ss_pred             eEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCcCCCC----ccce--eeCccHHHHHHHcCChhHHHHHhcCCCccCcc
Confidence            6999999999999999999998 599999999876543    7776  689999999999999887765432    1121


Q ss_pred             eEEEecCC---cEEEee----CCC-CCcH-----HHHhcCCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEE
Q psy9141          83 RMIHGQNG---KLREIP----YDP-VHNQ-----VELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLI  149 (379)
Q Consensus        83 ~~~~~~~g---~~~~~~----~~~-~~~~-----~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlV  149 (379)
                      ..+...++   ......    +.. ...+     ......++..++++++|++++.++++++++++ +|++   ++||+|
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~v~~~~~v~~i~~~~~~~~v~~~-~g~~---~~ad~v  151 (414)
T TIGR03219        76 IWFEWRNGSDASYLGATIAPGVGQSSVHRADFLDALLKHLPEGIASFGKRATQIEEQAEEVQVLFT-DGTE---YRCDLL  151 (414)
T ss_pred             eeEEEEecCccceeeeeccccCCcccCCHHHHHHHHHHhCCCceEEcCCEEEEEEecCCcEEEEEc-CCCE---EEeeEE
Confidence            11111111   111111    111 0111     22233456778999999999998889999998 8887   999999


Q ss_pred             EecCCCChHHHHHhh
Q psy9141         150 IGADGAYSGVRKCLM  164 (379)
Q Consensus       150 V~AdG~~S~vr~~l~  164 (379)
                      |+|||.+|.+|+.+.
T Consensus       152 VgADG~~S~vR~~l~  166 (414)
T TIGR03219       152 IGADGIKSALRDYVL  166 (414)
T ss_pred             EECCCccHHHHHHhc
Confidence            999999999999884

Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.

>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase

Probab=99.94  E-value=2.6e-25  Score=226.89  Aligned_cols=283  Identities=16%  Similarity=0.175  Sum_probs=159.7

Q ss_pred             CCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCC-CCCCCCCCcccccccCHHHHHHHHHCCC--hHHHHhCCCCce
Q psy9141           5 SKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDI-RNSGLSEGKSINLALSVRGREALRRIGL--EDKLLAHGIPMR   81 (379)
Q Consensus         5 ~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~-~~~~~~~g~~i~~al~~~~~~~l~~lGl--~~~l~~~~~~~~   81 (379)
                      +..+|+||||||+||++|++|+++|++|+|+||++.. ...+. .++++  .++++++++|+++|+  .+++.+.+....
T Consensus        80 ~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~~~~r~~G~-~~~~I--~L~pngl~aLe~LGl~~~e~l~~~g~~~~  156 (668)
T PLN02927         80 KKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDLSAIRGEGK-YRGPI--QIQSNALAALEAIDIDVAEQVMEAGCITG  156 (668)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccccccccccc-cCccc--ccCHHHHHHHHHcCcchHHHHHhhcCccc
Confidence            4589999999999999999999999999999998632 11110 12344  689999999999985  455555443221


Q ss_pred             -ee-EEEec-CCcE-EEee-------CCCC----CcH----HHHh-cCCCCeEEeCceEEEEEecCCeEEEEEccCCcee
Q psy9141          82 -AR-MIHGQ-NGKL-REIP-------YDPV----HNQ----VELE-QYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSET  141 (379)
Q Consensus        82 -~~-~~~~~-~g~~-~~~~-------~~~~----~~~----~~~~-~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~  141 (379)
                       .. .+.+. .|.. ..++       ++..    ..+    ..+. ......++++++|++++.+++++++++. +|++ 
T Consensus       157 ~~i~~~~d~~~G~~~~~~~~~~~~~~~g~p~~~~I~R~~L~~~L~~alg~~~i~~g~~V~~I~~~~d~VtV~~~-dG~t-  234 (668)
T PLN02927        157 DRINGLVDGISGSWYVKFDTFTPAASRGLPVTRVISRMTLQQILARAVGEDVIRNESNVVDFEDSGDKVTVVLE-NGQR-  234 (668)
T ss_pred             ceeeeeeecCCCceEeeccccccccccCCCeEEEEeHHHHHHHHHhhCCCCEEEcCCEEEEEEEeCCEEEEEEC-CCCE-
Confidence             11 11121 2221 1111       1111    122    2222 2223347889999999999999999998 8877 


Q ss_pred             EEEeecEEEecCCCChHHHHHhhhcCCCCccceeeeeeeEEEeeCCCCCccccccccceeeecCCCCeEEEEEecCCCce
Q psy9141         142 KITDNQLIIGADGAYSGVRKCLMKQSMFNYSQTYIEHGYMELCIPPSEDNEVWLYKNRLLSSVPEVRKRISLRAQSLKSL  221 (379)
Q Consensus       142 ~~i~adlVV~AdG~~S~vr~~l~~~~~~~~~~~~i~~~~~~~~~p~~~~~~~~~~p~~~~~~~p~~~~~~~~~~~~~~~~  221 (379)
                        +++|+||+|||.+|.+|+.+.+.....|.......+.... .|.   .   +.......+. .....++.++...+.+
T Consensus       235 --i~aDlVVGADG~~S~vR~~l~g~~~~~~sG~~~~rgi~~~-~p~---~---~~~~~~~~~~-G~~~~~v~~~v~~g~~  304 (668)
T PLN02927        235 --YEGDLLVGADGIWSKVRNNLFGRSEATYSGYTCYTGIADF-IPA---D---IESVGYRVFL-GHKQYFVSSDVGGGKM  304 (668)
T ss_pred             --EEcCEEEECCCCCcHHHHHhcCCCCCcccceEEEEEEcCC-Ccc---c---ccccceEEEE-cCCeEEEEEcCCCCeE
Confidence              9999999999999999999965544455543322222211 111   0   0000011111 1212333333333322


Q ss_pred             ee--e-cCC----CCCCChhhhcccc--ccccc---ccCCcccC----CCccccCCCCCccccCCcEEEe--eecccCCC
Q psy9141         222 MN--F-PRA----DQGGDKRDCLLHE--GTSRI---LVPNMRLS----NHLDRDQPCKPLLDFKNPIKIQ--SHAVVNEF  283 (379)
Q Consensus       222 ~~--~-p~~----~~~~~~~~~l~~~--g~~~~---~~~~~~~~----~~~~~~~~~~~~~~~~~~~liG--Ah~~~~P~  283 (379)
                      .+  + +..    .......+.+.+.  +|...   +.......    .......+...|. ..+++|+|  ||+|+ |+
T Consensus       305 ~~~~f~~~p~~~~~~~~~~~e~L~~~f~~w~~~v~elI~~t~~~~i~~~~iyd~~p~~~W~-~grVvLiGDAAH~~~-P~  382 (668)
T PLN02927        305 QWYAFHEEPAGGADAPNGMKKRLFEIFDGWCDNVLDLLHATEEDAILRRDIYDRSPGFTWG-KGRVTLLGDSIHAMQ-PN  382 (668)
T ss_pred             EEEEEEECCccccccchhHHHHHHHHhccCCHHHHHHHHhCccccceeeeEEeccCCCccc-cCcEEEEcCccCCCC-Cc
Confidence            21  1 111    0111112222111  22111   11111000    0011113334565 45899999  77765 99


Q ss_pred             cchhhhhHHHHHHHHHHhhcc
Q psy9141         284 YKQESLIVASLCQEKIEKMFD  304 (379)
Q Consensus       284 ~GQG~n~gl~Da~~L~~~l~~  304 (379)
                      .|||+|+|++|+..|+.+|.+
T Consensus       383 ~GqG~n~AieDa~~La~~L~~  403 (668)
T PLN02927        383 MGQGGCMAIEDSFQLALELDE  403 (668)
T ss_pred             cccchHHHHHHHHHHHHHHHH
Confidence            999999999999999999865

>KOG3855|consensus

Probab=99.93  E-value=1.6e-26  Score=216.00  Aligned_cols=318  Identities=18%  Similarity=0.180  Sum_probs=212.7

Q ss_pred             CCCcEEEECCChHHHHHHHHHHhC----CCcEEEEccCCCCC--C---CCCCCCcccccccCHHHHHHHHHCCChHHHHh
Q psy9141           5 SKKSVVIVGGGLVGSLSACMFAKN----QYEVNLYEAREDIR--N---SGLSEGKSINLALSVRGREALRRIGLEDKLLA   75 (379)
Q Consensus         5 ~~~dVvIVGaGpaGl~~A~~La~~----G~~V~viE~~~~~~--~---~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~   75 (379)
                      ..|||+||||||+|+++|..|...    .++|.++|....+.  .   ...+..|..  .+++.+...++.+|.|+.+..
T Consensus        35 ~~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~~s~kl~~~~~~~~f~Nrvs--s~s~~s~~~fk~~~awd~i~~  112 (481)
T KOG3855|consen   35 AKYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAGDSPKLGDFKPSETFSNRVS--SISPASISLFKSIGAWDHIFH  112 (481)
T ss_pred             ccCCEEEECCchHHHHHHHHhccCCccchheeeEEecccCccccccccCccccceee--cCCcchHHHHHhcCHHHHhhh
Confidence            368999999999999999999865    46999999884332  1   134556654  689999999999999999876


Q ss_pred             C-CCCceeeEEEecCCcEEEeeCCCC---------C-c---H------HHHhcCCCCeEEeCceEEEEEec------C-C
Q psy9141          76 H-GIPMRARMIHGQNGKLREIPYDPV---------H-N---Q------VELEQYPDCNIYFQHKLINLDVN------S-G  128 (379)
Q Consensus        76 ~-~~~~~~~~~~~~~g~~~~~~~~~~---------~-~---~------~~~~~~~gv~i~~~~~v~~i~~~------~-~  128 (379)
                      . ..+..++.+++..... .+.|+..         . +   +      ...++.++++|....++.++...      + +
T Consensus       113 ~R~~~~~~~~v~Ds~s~a-~I~~~~d~~~~d~a~iien~nIq~sL~~s~~~s~~~nv~vi~~~k~~~~~~~~~l~~~~n~  191 (481)
T KOG3855|consen  113 DRYQKFSRMLVWDSCSAA-LILFDHDNVGIDMAFIIENDNIQCSLYNSQLDSESDNVTVINMAKVIDCTIPEYLIKNDNG  191 (481)
T ss_pred             hccccccceeeecccchh-hhhhccccccccceeeeehhHHHHHHHHHHHhhhcCceeeecccceeeeccccccCCCCCc
Confidence            5 7788888888865432 1112111         0 1   1      23356689999999998887652      1 2


Q ss_pred             -eEEEEEccCCceeEEEeecEEEecCCCChHHHHHh-hhcCCCCccceeeeee------------eEEEeeCCCCCcccc
Q psy9141         129 -NVTFYRTEDNSETKITDNQLIIGADGAYSGVRKCL-MKQSMFNYSQTYIEHG------------YMELCIPPSEDNEVW  194 (379)
Q Consensus       129 -~v~v~~~~~G~~~~~i~adlVV~AdG~~S~vr~~l-~~~~~~~~~~~~i~~~------------~~~~~~p~~~~~~~~  194 (379)
                       ...+++. ||..   +.+|++|+|||.+|.+|+.. +......|.+..+...            .|++|.|   .|+++
T Consensus       192 ~~~~i~l~-dg~~---~~~~LLigAdg~Ns~vR~~snid~~~~ny~~havVAtl~l~~~~~~~~~AwQRFlP---~GpiA  264 (481)
T KOG3855|consen  192 MWFHITLT-DGIN---FATDLLIGADGFNSVVRKASNIDVASWNYDQHAVVATLKLEEEAILNGVAWQRFLP---TGPIA  264 (481)
T ss_pred             ceEEEEec-cCce---eeeceeeccccccchhhhhcCCCcccccccceeeeEEEEecccccccchhHHhcCC---CCcee
Confidence             3457777 8887   99999999999999999998 8888888888765111            1345666   59999


Q ss_pred             ccccceeeecCCCCeEEEE--EecCCCceeeecCCCCCCChhhhccccccccccc------------------------C
Q psy9141         195 LYKNRLLSSVPEVRKRISL--RAQSLKSLMNFPRADQGGDKRDCLLHEGTSRILV------------------------P  248 (379)
Q Consensus       195 ~~p~~~~~~~p~~~~~~~~--~~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~~~------------------------~  248 (379)
                      ++|+      ++....++|  .+.....+..+|.|.|.+.++..|..+.......                        .
T Consensus       265 llpl------~d~~s~LvWSts~~~a~~L~~lp~e~fv~~lNsaf~~q~~~~~~~~~~~~al~~~~~~~~sl~~~~k~~~  338 (481)
T KOG3855|consen  265 LLPL------SDTLSSLVWSTSPENASILKSLPEERFVDLLNSAFSSQNPRAAYSDDADFALNGRAQLSESLLNTSKRLA  338 (481)
T ss_pred             eccc------ccccccceeecCHHHHHHHhcCCchhHHHHHHHHHhccCCCchhhhchhhhhcchhhccHHHHhccCccc
Confidence            9995      444334444  4555667778999988888877765441100000                        0


Q ss_pred             CcccCC------------CccccCCCCCccccCCcEEEe--eecccCCCcchhhhhHHHHHHHHHHhhcc----------
Q psy9141         249 NMRLSN------------HLDRDQPCKPLLDFKNPIKIQ--SHAVVNEFYKQESLIVASLCQEKIEKMFD----------  304 (379)
Q Consensus       249 ~~~~~~------------~~~~~~~~~~~~~~~~~~liG--Ah~~~~P~~GQG~n~gl~Da~~L~~~l~~----------  304 (379)
                      ++..++            ++.+..+...++ ..|++++|  ||.+ ||.+|||.|+|..|+..|++.|.+          
T Consensus       339 ~~q~pp~V~~v~dksRa~FPLgf~ha~~yV-~~~~Al~GDAAHr~-hPlAgqGvNlg~~dV~~L~~sL~~ai~~g~DlgS  416 (481)
T KOG3855|consen  339 NQQYPPSVFEVGDKSRAQFPLGFGHADEYV-TDRVALIGDAAHRV-HPLAGQGVNLGFSDVKILVDSLSEAIVSGLDLGS  416 (481)
T ss_pred             ccccCCeEEEecccceeecccccccHHHhc-CCchhhhcchhhcc-ccCcccccCCChhhHHHHHHHHHHHHHhcccccc
Confidence            000000            011111111111 11899999  6664 599999999999999999998876          


Q ss_pred             --ccccccccc-------hhhhhheeeeEEeeecccccchhhHHH
Q psy9141         305 --NTSTYKSRH-------INFIHRSYHLYTVDIGVHKVTESSILN  340 (379)
Q Consensus       305 --~~~~~~~~~-------~~~~~~~~~~~t~~~~~~~~~~~~~~~  340 (379)
                        .+..|.++.       ...++.+.+||..+.||-=+-..+=+|
T Consensus       417 ~~~L~~y~~~~~~~N~~ll~~vdkl~klY~t~~p~vV~~rt~GL~  461 (481)
T KOG3855|consen  417 VEHLEPYERERLQHNYVLLGAVDKLHKLYATSAPPVVLLRTFGLQ  461 (481)
T ss_pred             hhhhhHHHHHHhhhcchHHHHHHHHHHHHhccCCcEEEEeccchh
Confidence              333455443       445555666888877776554444333

>PRK11445 putative oxidoreductase; Provisional

Probab=99.91  E-value=9.1e-23  Score=197.23  Aligned_cols=154  Identities=19%  Similarity=0.164  Sum_probs=101.0

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCC-CCceeeEE
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHG-IPMRARMI   85 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~-~~~~~~~~   85 (379)
                      +||+||||||+|+++|+.|++. ++|+|+|+.+.....+.....+.  .+++++.++|+++|++....... ........
T Consensus         2 ~dV~IvGaGpaGl~~A~~La~~-~~V~liE~~~~~~~~~~~~~~g~--~l~~~~~~~L~~lgl~~~~~~~~~~~~~~~~~   78 (351)
T PRK11445          2 YDVAIIGLGPAGSALARLLAGK-MKVIAIDKKHQCGTEGFSKPCGG--LLAPDAQKSFAKDGLTLPKDVIANPQIFAVKT   78 (351)
T ss_pred             ceEEEECCCHHHHHHHHHHhcc-CCEEEEECCCccccccccCcCcC--ccCHHHHHHHHHcCCCCCcceeeccccceeeE
Confidence            6999999999999999999999 99999999986532221111222  58999999999999863211100 00000111


Q ss_pred             EecCCcE-EEeeCCC-CCcH------HHHhcCCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEEEecCCCCh
Q psy9141          86 HGQNGKL-REIPYDP-VHNQ------VELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAYS  157 (379)
Q Consensus        86 ~~~~g~~-~~~~~~~-~~~~------~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlVV~AdG~~S  157 (379)
                      .+..... ....... ...+      .......++++++++.+++++.+++++.+++..+|+..+ ++||+||+|||++|
T Consensus        79 ~~~~~~~~~~~~~~~~~i~R~~~~~~L~~~~~~gv~v~~~~~v~~i~~~~~~~~v~~~~~g~~~~-i~a~~vV~AdG~~S  157 (351)
T PRK11445         79 IDLANSLTRNYQRSYINIDRHKFDLWLKSLIPASVEVYHNSLCRKIWREDDGYHVIFRADGWEQH-ITARYLVGADGANS  157 (351)
T ss_pred             ecccccchhhcCCCcccccHHHHHHHHHHHHhcCCEEEcCCEEEEEEEcCCEEEEEEecCCcEEE-EEeCEEEECCCCCc
Confidence            1111100 0000010 1122      111224689999999999999888888887532676445 99999999999999


Q ss_pred             HHHHHhh
Q psy9141         158 GVRKCLM  164 (379)
Q Consensus       158 ~vr~~l~  164 (379)
                      .+|+++.
T Consensus       158 ~vr~~l~  164 (351)
T PRK11445        158 MVRRHLY  164 (351)
T ss_pred             HHhHHhc
Confidence            9999884

>TIGR02032 GG-red-SF geranylgeranyl reductase family

Probab=99.91  E-value=2.3e-22  Score=188.85  Aligned_cols=143  Identities=25%  Similarity=0.252  Sum_probs=98.1

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeEEE
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARMIH   86 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~   86 (379)
                      |||+||||||+|+++|+.|++.|++|+|+||++.+...    ..+.  .+.+.+.+.+...+...     ........++
T Consensus         1 ~dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~~~~~~----~~~~--~~~~~~~~~l~~~~~~~-----~~~~~~~~~~   69 (295)
T TIGR02032         1 YDVVVVGAGPAGASAAYRLADKGLRVLLLEKKSFPRYK----PCGG--ALSPRVLEELDLPLELI-----VNLVRGARFF   69 (295)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCcc----cccC--ccCHhHHHHhcCCchhh-----hhheeeEEEE
Confidence            69999999999999999999999999999999866432    2222  46788877776654311     1122333344


Q ss_pred             ecCCcEEEeeCCCC----CcH-------HHHhcCCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEEEecCCC
Q psy9141          87 GQNGKLREIPYDPV----HNQ-------VELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGA  155 (379)
Q Consensus        87 ~~~g~~~~~~~~~~----~~~-------~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlVV~AdG~  155 (379)
                      ...+.....+....    ..+       .......+++++++++++++..+++++++.+..++.+   ++||+||+|||.
T Consensus        70 ~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~gv~~~~~~~v~~~~~~~~~~~~~~~~~~~~---~~a~~vv~a~G~  146 (295)
T TIGR02032        70 SPNGDSVEIPIETELAYVIDRDAFDEQLAERAQEAGAELRLGTTVLDVEIHDDRVVVIVRGGEGT---VTAKIVIGADGS  146 (295)
T ss_pred             cCCCcEEEeccCCCcEEEEEHHHHHHHHHHHHHHcCCEEEeCcEEeeEEEeCCEEEEEEcCccEE---EEeCEEEECCCc
Confidence            43443222211110    011       2222346899999999999998888887766513344   999999999999


Q ss_pred             ChHHHHHh
Q psy9141         156 YSGVRKCL  163 (379)
Q Consensus       156 ~S~vr~~l  163 (379)
                      +|.+|+.+
T Consensus       147 ~s~~~~~~  154 (295)
T TIGR02032       147 RSIVAKKL  154 (295)
T ss_pred             chHHHHhc
Confidence            99999977

This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.

>TIGR02023 BchP-ChlP geranylgeranyl reductase

Probab=99.88  E-value=1.1e-20  Score=185.08  Aligned_cols=143  Identities=20%  Similarity=0.244  Sum_probs=99.0

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeEEE
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARMIH   86 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~   86 (379)
                      |||+||||||+|+++|+.|++.|++|+|+|+.. ..  ...+|.+    +++   +.++.+|+.+++...  .+....++
T Consensus         1 yDVvIVGaGpAG~~aA~~La~~G~~V~l~E~~~-~~--~~~cg~~----i~~---~~l~~l~i~~~~~~~--~~~~~~~~   68 (388)
T TIGR02023         1 YDVAVIGGGPSGATAAETLARAGIETILLERAL-SN--IKPCGGA----IPP---CLIEEFDIPDSLIDR--RVTQMRMI   68 (388)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCcEEEEECCC-CC--cCcCcCC----cCH---hhhhhcCCchHHHhh--hcceeEEE
Confidence            699999999999999999999999999999982 11  1223543    344   467888887776543  45556666


Q ss_pred             ecCCcEEEeeCC----C--CCcH-------HHHhcCCCCeEEeCceEEEEEecCCeEEEEEcc-----CCceeEEEeecE
Q psy9141          87 GQNGKLREIPYD----P--VHNQ-------VELEQYPDCNIYFQHKLINLDVNSGNVTFYRTE-----DNSETKITDNQL  148 (379)
Q Consensus        87 ~~~g~~~~~~~~----~--~~~~-------~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~-----~G~~~~~i~adl  148 (379)
                      .+++........    .  ...+       ...+...|++++.+ +|+++..+++++.+++.+     +|+..+ ++||+
T Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~r~~fd~~L~~~a~~~G~~v~~~-~v~~v~~~~~~~~v~~~~~~~~~~~~~~~-i~a~~  146 (388)
T TIGR02023        69 SPSRVPIKVTIPSEDGYVGMVRREVFDSYLRERAQKAGAELIHG-LFLKLERDRDGVTLTYRTPKKGAGGEKGS-VEADV  146 (388)
T ss_pred             cCCCceeeeccCCCCCceEeeeHHHHHHHHHHHHHhCCCEEEee-EEEEEEEcCCeEEEEEEeccccCCCcceE-EEeCE
Confidence            655432222111    1  0122       12223458999765 699998888888777651     233335 99999


Q ss_pred             EEecCCCChHHHHHh
Q psy9141         149 IIGADGAYSGVRKCL  163 (379)
Q Consensus       149 VV~AdG~~S~vr~~l  163 (379)
                      ||+|||.+|.+|+.+
T Consensus       147 VI~AdG~~S~v~r~l  161 (388)
T TIGR02023       147 VIGADGANSPVAKEL  161 (388)
T ss_pred             EEECCCCCcHHHHHc
Confidence            999999999999987

This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).

>PLN00093 geranylgeranyl diphosphate reductase; Provisional

Probab=99.85  E-value=9.2e-20  Score=181.16  Aligned_cols=144  Identities=22%  Similarity=0.243  Sum_probs=94.4

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeEE
Q psy9141           6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARMI   85 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~~   85 (379)
                      ++||+||||||+|+++|+.|+++|++|+|+||.+..   +..+|.++    +   ...++++|+++.+...  .+..+.+
T Consensus        39 ~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~~~---~k~cgg~i----~---~~~l~~lgl~~~~~~~--~i~~~~~  106 (450)
T PLN00093         39 KLRVAVIGGGPAGACAAETLAKGGIETFLIERKLDN---AKPCGGAI----P---LCMVGEFDLPLDIIDR--KVTKMKM  106 (450)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCC---CCCccccc----c---HhHHhhhcCcHHHHHH--HhhhheE
Confidence            589999999999999999999999999999998532   22345543    2   3667888888766542  3334444


Q ss_pred             EecCCcEEEeeC-----CCC--CcH-------HHHhcCCCCeEEeCceEEEEEec---CCeEEEEEccC------CceeE
Q psy9141          86 HGQNGKLREIPY-----DPV--HNQ-------VELEQYPDCNIYFQHKLINLDVN---SGNVTFYRTED------NSETK  142 (379)
Q Consensus        86 ~~~~g~~~~~~~-----~~~--~~~-------~~~~~~~gv~i~~~~~v~~i~~~---~~~v~v~~~~~------G~~~~  142 (379)
                      +.+.+....+..     ...  ..+       ...+...|++++.+ .+++++..   ++.+.+++...      |+..+
T Consensus       107 ~~p~~~~v~~~~~~~~~~~~~~v~R~~~d~~L~~~A~~~Ga~~~~~-~v~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~  185 (450)
T PLN00093        107 ISPSNVAVDIGKTLKPHEYIGMVRREVLDSFLRERAQSNGATLING-LFTRIDVPKDPNGPYVIHYTSYDSGSGAGTPKT  185 (450)
T ss_pred             ecCCceEEEecccCCCCCeEEEecHHHHHHHHHHHHHHCCCEEEec-eEEEEEeccCCCCcEEEEEEeccccccCCCccE
Confidence            443332221110     010  122       12233468999876 57777642   24555554311      44344


Q ss_pred             EEeecEEEecCCCChHHHHHh
Q psy9141         143 ITDNQLIIGADGAYSGVRKCL  163 (379)
Q Consensus       143 ~i~adlVV~AdG~~S~vr~~l  163 (379)
                       ++||+||+|||++|.+|+.+
T Consensus       186 -v~a~~VIgADG~~S~vrr~l  205 (450)
T PLN00093        186 -LEVDAVIGADGANSRVAKDI  205 (450)
T ss_pred             -EEeCEEEEcCCcchHHHHHh
Confidence             99999999999999999998

>KOG1298|consensus

Probab=99.85  E-value=5.3e-20  Score=170.84  Aligned_cols=279  Identities=19%  Similarity=0.201  Sum_probs=173.7

Q ss_pred             CCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhC-CCCceee
Q psy9141           5 SKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAH-GIPMRAR   83 (379)
Q Consensus         5 ~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~-~~~~~~~   83 (379)
                      ..+||+|||||.+|.++|+.|++.|.+|+||||+-...  ...-|.    .++|.+...|.++|+.+.++.. +....+.
T Consensus        44 ~~~DvIIVGAGV~GsaLa~~L~kdGRrVhVIERDl~EP--dRivGE----llQPGG~~~L~~LGl~Dcve~IDAQ~v~Gy  117 (509)
T KOG1298|consen   44 GAADVIIVGAGVAGSALAYALAKDGRRVHVIERDLSEP--DRIVGE----LLQPGGYLALSKLGLEDCVEGIDAQRVTGY  117 (509)
T ss_pred             CcccEEEECCcchHHHHHHHHhhCCcEEEEEecccccc--hHHHHH----hcCcchhHHHHHhCHHHHhhcccceEeeee
Confidence            35899999999999999999999999999999985322  111232    5889999999999998887765 6777788


Q ss_pred             EEEecCCcEEEeeCCCCC------------cH------HHHhcCCCCeEEeCceEEEEEecCC---eEEEEEccCCceeE
Q psy9141          84 MIHGQNGKLREIPYDPVH------------NQ------VELEQYPDCNIYFQHKLINLDVNSG---NVTFYRTEDNSETK  142 (379)
Q Consensus        84 ~~~~~~g~~~~~~~~~~~------------~~------~~~~~~~gv~i~~~~~v~~i~~~~~---~v~v~~~~~G~~~~  142 (379)
                      .++. +|+...++|....            ++      +.....+|+++..++ |+++..+++   +|+.... .|++.+
T Consensus       118 ~ifk-~gk~v~~pyP~~~f~~d~~GrsFhnGRFvq~lR~ka~slpNV~~eeGt-V~sLlee~gvvkGV~yk~k-~gee~~  194 (509)
T KOG1298|consen  118 AIFK-DGKEVDLPYPLKNFPSDPSGRSFHNGRFVQRLRKKAASLPNVRLEEGT-VKSLLEEEGVVKGVTYKNK-EGEEVE  194 (509)
T ss_pred             EEEe-CCceeeccCCCcCCCCCcccceeeccHHHHHHHHHHhcCCCeEEeeee-HHHHHhccCeEEeEEEecC-CCceEE
Confidence            7776 5555555554321            11      455677999988774 666655555   4455555 677777


Q ss_pred             EEeecEEEecCCCChHHHHHhhhcCCCCccceeeeeeeEEEeeCCCCCccccccccceeeecCCCCeEEEEEecCCCce-
Q psy9141         143 ITDNQLIIGADGAYSGVRKCLMKQSMFNYSQTYIEHGYMELCIPPSEDNEVWLYKNRLLSSVPEVRKRISLRAQSLKSL-  221 (379)
Q Consensus       143 ~i~adlVV~AdG~~S~vr~~l~~~~~~~~~~~~i~~~~~~~~~p~~~~~~~~~~p~~~~~~~p~~~~~~~~~~~~~~~~-  221 (379)
                       ..|.+.|.|||-+|.+|+.+.+.........++......+..|         .|+..|..+.+. ..+.+|+....+. 
T Consensus       195 -~~ApLTvVCDGcfSnlRrsL~~~~v~~V~S~fVG~vl~N~~l~---------~p~hghvIL~~p-spil~Y~ISStEvR  263 (509)
T KOG1298|consen  195 -AFAPLTVVCDGCFSNLRRSLCDPKVEEVPSYFVGLVLKNCRLP---------APNHGHVILSKP-SPILVYQISSTEVR  263 (509)
T ss_pred             -EecceEEEecchhHHHHHHhcCCcccccchheeeeeecCCCCC---------CCCcceEEecCC-CcEEEEEecchheE
Confidence             8999999999999999999954333323333322211122222         233444444433 3455665543322 


Q ss_pred             --eeecCCCCCCChh----hhcccccccccccCCcccC------CCccccCC---C-CCccccCCcEEEe-eecccCCCc
Q psy9141         222 --MNFPRADQGGDKR----DCLLHEGTSRILVPNMRLS------NHLDRDQP---C-KPLLDFKNPIKIQ-SHAVVNEFY  284 (379)
Q Consensus       222 --~~~p~~~~~~~~~----~~l~~~g~~~~~~~~~~~~------~~~~~~~~---~-~~~~~~~~~~liG-Ah~~~~P~~  284 (379)
                        ..+|....+...+    ..+.+. ....+....+.+      +...+.-|   + ......++..++| |-.|-||.+
T Consensus       264 cl~~v~g~~~Psi~~gem~~~mk~~-v~PqiP~~lR~~F~~av~~g~irsmpn~~mpa~~~~~~G~illGDAfNMRHPlt  342 (509)
T KOG1298|consen  264 CLVDVPGQKLPSIANGEMATYMKES-VAPQIPEKLRESFLEAVDEGNIRSMPNSSMPATLNDKKGVILLGDAFNMRHPLT  342 (509)
T ss_pred             EEEecCcccCCcccchhHHHHHHHh-hCcCCCHHHHHHHHHHhhccchhcCccccCCCCcCCCCceEEEcccccccCCcc
Confidence              2344443333333    111111 111111111111      00111111   1 1122344789999 999988999


Q ss_pred             chhhhhHHHHHHHHHHhhcc
Q psy9141         285 KQESLIVASLCQEKIEKMFD  304 (379)
Q Consensus       285 GQG~n~gl~Da~~L~~~l~~  304 (379)
                      |-||..++.|+..|-+.|..
T Consensus       343 ggGMtV~l~Di~lLr~ll~p  362 (509)
T KOG1298|consen  343 GGGMTVALSDIVLLRRLLKP  362 (509)
T ss_pred             CCceEeehhHHHHHHHHhcc
Confidence            99999999999999888865

>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed

Probab=99.85  E-value=2.2e-20  Score=196.97  Aligned_cols=133  Identities=17%  Similarity=0.172  Sum_probs=90.0

Q ss_pred             cEEEECCChHHHHHHHHHHhC--CCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCC--ChHHHHhCCCCceee
Q psy9141           8 SVVIVGGGLVGSLSACMFAKN--QYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIG--LEDKLLAHGIPMRAR   83 (379)
Q Consensus         8 dVvIVGaGpaGl~~A~~La~~--G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lG--l~~~l~~~~~~~~~~   83 (379)
                      +|+||||||+||++|+.|++.  |++|+|+||++.....    |.++  .+++++.+.|+.++  +...+..........
T Consensus         2 ~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~~~~~----G~Gi--~ls~~~l~~L~~~~~~~~~~~~~~~~~~~~~   75 (765)
T PRK08255          2 RIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRPYDTF----GWGV--VFSDATLGNLRAADPVSAAAIGDAFNHWDDI   75 (765)
T ss_pred             eEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCCCccc----Ccce--EccHHHHHHHHhcCHHHHHHHHHhcccCCce
Confidence            699999999999999999998  8999999999865443    6665  58899999998876  333333332233333


Q ss_pred             EEEecCCcEEE---eeCCCCCcH-------HHHhcCCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEEEecC
Q psy9141          84 MIHGQNGKLRE---IPYDPVHNQ-------VELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGAD  153 (379)
Q Consensus        84 ~~~~~~g~~~~---~~~~~~~~~-------~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlVV~Ad  153 (379)
                      .+.. .+....   ..|... .+       .......+++++++++|++++.             ..   .++|+||+||
T Consensus        76 ~~~~-~g~~~~~~g~~~~~i-~R~~L~~~L~e~a~~~GV~i~~g~~v~~i~~-------------~~---~~~D~VVgAD  137 (765)
T PRK08255         76 DVHF-KGRRIRSGGHGFAGI-GRKRLLNILQARCEELGVKLVFETEVPDDQA-------------LA---ADADLVIASD  137 (765)
T ss_pred             EEEE-CCEEEEECCeeEecC-CHHHHHHHHHHHHHHcCCEEEeCCccCchhh-------------hh---cCCCEEEEcC
Confidence            3332 222211   112111 22       1222335899999998876531             11   5789999999


Q ss_pred             CCChHHHHHhh
Q psy9141         154 GAYSGVRKCLM  164 (379)
Q Consensus       154 G~~S~vr~~l~  164 (379)
                      |.+|.+|+.+.
T Consensus       138 G~~S~vR~~~~  148 (765)
T PRK08255        138 GLNSRIRTRYA  148 (765)
T ss_pred             CCCHHHHHHHH
Confidence            99999999873

>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]

Probab=99.82  E-value=1.2e-18  Score=171.18  Aligned_cols=147  Identities=22%  Similarity=0.191  Sum_probs=99.2

Q ss_pred             CCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeE
Q psy9141           5 SKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARM   84 (379)
Q Consensus         5 ~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~   84 (379)
                      .+|||+||||||||+++|+.|++.|++|+|+||...+.....+ +.    .+.+...+.+......+ +   ...+....
T Consensus         2 ~~~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~G~k~~~-~~----~~~~~~l~~l~~~~~~~-i---~~~v~~~~   72 (396)
T COG0644           2 MEYDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKPCC-GG----GLSPRALEELIPDFDEE-I---ERKVTGAR   72 (396)
T ss_pred             ceeeEEEECCchHHHHHHHHHHHcCCeEEEEecCCCCCCCccc-cc----eechhhHHHhCCCcchh-h---heeeeeeE
Confidence            3589999999999999999999999999999999988754322 22    24555544443322111 1   22333334


Q ss_pred             EEecCCcEEEeeCCCC----CcH-------HHHhcCCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEEEecC
Q psy9141          85 IHGQNGKLREIPYDPV----HNQ-------VELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGAD  153 (379)
Q Consensus        85 ~~~~~g~~~~~~~~~~----~~~-------~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlVV~Ad  153 (379)
                      ++.. +....+.....    ..+       ...++..|++++.+++++++..+++++.+... .|. .+ ++|++||+||
T Consensus        73 ~~~~-~~~~~~~~~~~~~y~v~R~~fd~~La~~A~~aGae~~~~~~~~~~~~~~~~~~~~~~-~~~-~e-~~a~~vI~Ad  148 (396)
T COG0644          73 IYFP-GEKVAIEVPVGEGYIVDRAKFDKWLAERAEEAGAELYPGTRVTGVIREDDGVVVGVR-AGD-DE-VRAKVVIDAD  148 (396)
T ss_pred             EEec-CCceEEecCCCceEEEEhHHhhHHHHHHHHHcCCEEEeceEEEEEEEeCCcEEEEEE-cCC-EE-EEcCEEEECC
Confidence            4433 22222222111    111       33455679999999999999999887776555 442 33 9999999999


Q ss_pred             CCChHHHHHhh
Q psy9141         154 GAYSGVRKCLM  164 (379)
Q Consensus       154 G~~S~vr~~l~  164 (379)
                      |.+|.+++.+.
T Consensus       149 G~~s~l~~~lg  159 (396)
T COG0644         149 GVNSALARKLG  159 (396)
T ss_pred             CcchHHHHHhC
Confidence            99999999983

>PRK10015 oxidoreductase; Provisional

Probab=99.81  E-value=3.1e-18  Score=169.73  Aligned_cols=151  Identities=17%  Similarity=0.241  Sum_probs=91.5

Q ss_pred             CCCCCCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHH-HHhCCCC
Q psy9141           1 MKCNSKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDK-LLAHGIP   79 (379)
Q Consensus         1 M~~m~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~-l~~~~~~   79 (379)
                      |+ +.+|||+||||||+|+++|+.|++.|++|+||||.+.+.....+.++     ++..+.+.+-. +++.. ..+....
T Consensus         1 m~-~~~~DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~~~g~k~~~gg~-----i~~~~~~~l~~-~~~~~~~i~~~~~   73 (429)
T PRK10015          1 MS-DDKFDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSAGCKNMTGGR-----LYAHTLEAIIP-GFAASAPVERKVT   73 (429)
T ss_pred             CC-ccccCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCcccccCce-----eecccHHHHcc-cccccCCcccccc
Confidence            54 34699999999999999999999999999999999876543222232     22222222210 22110 0001111


Q ss_pred             ceeeEEEecCCcEEEeeCC-----------CCCcH-------HHHhcCCCCeEEeCceEEEEEecCCeEEEEEccCCcee
Q psy9141          80 MRARMIHGQNGKLREIPYD-----------PVHNQ-------VELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSET  141 (379)
Q Consensus        80 ~~~~~~~~~~g~~~~~~~~-----------~~~~~-------~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~  141 (379)
                      .....+...++. ..+++.           +...+       ...++..|++++.+++|+++..+++++..... ++.+ 
T Consensus        74 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~R~~fd~~L~~~a~~~Gv~i~~~~~V~~i~~~~~~v~~v~~-~~~~-  150 (429)
T PRK10015         74 REKISFLTEESA-VTLDFHREQPDVPQHASYTVLRNRLDPWLMEQAEQAGAQFIPGVRVDALVREGNKVTGVQA-GDDI-  150 (429)
T ss_pred             ceeEEEEeCCCc-eEeecccCCCCCCCcCceEeehhHHHHHHHHHHHHcCCEEECCcEEEEEEEeCCEEEEEEe-CCeE-
Confidence            111222222221 111111           00111       22233469999999999999887777664444 4545 


Q ss_pred             EEEeecEEEecCCCChHHHHHh
Q psy9141         142 KITDNQLIIGADGAYSGVRKCL  163 (379)
Q Consensus       142 ~~i~adlVV~AdG~~S~vr~~l  163 (379)
                        ++||+||+|||.+|.+++.+
T Consensus       151 --i~A~~VI~AdG~~s~v~~~l  170 (429)
T PRK10015        151 --LEANVVILADGVNSMLGRSL  170 (429)
T ss_pred             --EECCEEEEccCcchhhhccc
Confidence              99999999999999999887

>TIGR02028 ChlP geranylgeranyl reductase

Probab=99.81  E-value=3.1e-18  Score=168.31  Aligned_cols=143  Identities=19%  Similarity=0.224  Sum_probs=92.2

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeEEE
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARMIH   86 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~   86 (379)
                      +||+||||||+|+++|+.|+++|++|+|+||.+...   ..++.+    ++   ...|+++|+++.+...  .+....++
T Consensus         1 ~~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~~~~---~~cg~~----i~---~~~l~~~g~~~~~~~~--~i~~~~~~   68 (398)
T TIGR02028         1 LRVAVVGGGPAGASAAETLASAGIQTFLLERKPDNA---KPCGGA----IP---LCMVDEFALPRDIIDR--RVTKMKMI   68 (398)
T ss_pred             CeEEEECCcHHHHHHHHHHHhCCCcEEEEecCCCCC---CCcccc----cc---HhhHhhccCchhHHHh--hhceeEEe
Confidence            589999999999999999999999999999976432   223443    33   3567888887665542  33344444


Q ss_pred             ecCCcEEEee-------CCCCCcH-------HHHhcCCCCeEEeCceEEEEEe---cCCeEEEEEc-cC-----CceeEE
Q psy9141          87 GQNGKLREIP-------YDPVHNQ-------VELEQYPDCNIYFQHKLINLDV---NSGNVTFYRT-ED-----NSETKI  143 (379)
Q Consensus        87 ~~~g~~~~~~-------~~~~~~~-------~~~~~~~gv~i~~~~~v~~i~~---~~~~v~v~~~-~~-----G~~~~~  143 (379)
                      .+.+....+.       +.....+       ...+...|++++.++ +++++.   .++.+.+++. .+     |+..+ 
T Consensus        69 ~p~~~~~~~~~~~~~~~~~~~v~R~~~d~~L~~~a~~~G~~v~~~~-~~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~-  146 (398)
T TIGR02028        69 SPSNIAVDIGRTLKEHEYIGMLRREVLDSFLRRRAADAGATLINGL-VTKLSLPADADDPYTLHYISSDSGGPSGTRCT-  146 (398)
T ss_pred             cCCceEEEeccCCCCCCceeeeeHHHHHHHHHHHHHHCCcEEEcce-EEEEEeccCCCceEEEEEeeccccccCCCccE-
Confidence            4333221111       1001122       222344699998885 777753   2344445431 02     44345 


Q ss_pred             EeecEEEecCCCChHHHHHh
Q psy9141         144 TDNQLIIGADGAYSGVRKCL  163 (379)
Q Consensus       144 i~adlVV~AdG~~S~vr~~l  163 (379)
                      ++|++||+|||.+|.+|+.+
T Consensus       147 i~a~~VIgADG~~S~v~~~~  166 (398)
T TIGR02028       147 LEVDAVIGADGANSRVAKEI  166 (398)
T ss_pred             EEeCEEEECCCcchHHHHHh
Confidence            99999999999999999998

This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.

>PRK10157 putative oxidoreductase FixC; Provisional

Probab=99.80  E-value=4.1e-18  Score=168.89  Aligned_cols=146  Identities=20%  Similarity=0.242  Sum_probs=92.1

Q ss_pred             CCCCCCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCc
Q psy9141           1 MKCNSKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPM   80 (379)
Q Consensus         1 M~~m~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~   80 (379)
                      |+ ..+|||+||||||+|+++|+.|+++|++|+|+||.+.+...... |..    +...+.   +.+  ++.+... .++
T Consensus         1 m~-~~~~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~~~g~k~~~-gg~----l~~~~~---e~l--~~~~~~~-~~~   68 (428)
T PRK10157          1 MS-EDIFDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAGAKNVT-GGR----LYAHSL---EHI--IPGFADS-APV   68 (428)
T ss_pred             CC-cccCcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCCCCCCcccc-cce----echhhH---HHH--hhhhhhc-Ccc
Confidence            54 24699999999999999999999999999999999876543222 221    223322   222  1221111 111


Q ss_pred             ------eeeEEEecCCcEEEeeCC-----------CCCcH-------HHHhcCCCCeEEeCceEEEEEecCCeEEEEEcc
Q psy9141          81 ------RARMIHGQNGKLREIPYD-----------PVHNQ-------VELEQYPDCNIYFQHKLINLDVNSGNVTFYRTE  136 (379)
Q Consensus        81 ------~~~~~~~~~g~~~~~~~~-----------~~~~~-------~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~  136 (379)
                            ....+...++.. .+++.           +...+       ...++..|++++++++|++++.+++.+..... 
T Consensus        69 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~R~~fD~~L~~~a~~~Gv~i~~~~~V~~i~~~~g~v~~v~~-  146 (428)
T PRK10157         69 ERLITHEKLAFMTEKSAM-TMDYCNGDETSPSQRSYSVLRSKFDAWLMEQAEEAGAQLITGIRVDNLVQRDGKVVGVEA-  146 (428)
T ss_pred             cceeeeeeEEEEcCCCce-eeccccccccCCCCCceeeEHHHHHHHHHHHHHHCCCEEECCCEEEEEEEeCCEEEEEEc-
Confidence                  112222222221 11110           00011       22234469999999999999887777654455 


Q ss_pred             CCceeEEEeecEEEecCCCChHHHHHh
Q psy9141         137 DNSETKITDNQLIIGADGAYSGVRKCL  163 (379)
Q Consensus       137 ~G~~~~~i~adlVV~AdG~~S~vr~~l  163 (379)
                      +|.+   ++|++||+|||.+|.+++.+
T Consensus       147 ~g~~---i~A~~VI~A~G~~s~l~~~l  170 (428)
T PRK10157        147 DGDV---IEAKTVILADGVNSILAEKL  170 (428)
T ss_pred             CCcE---EECCEEEEEeCCCHHHHHHc
Confidence            6666   99999999999999999887

>TIGR01790 carotene-cycl lycopene cyclase family protein

Probab=99.74  E-value=6.3e-17  Score=158.51  Aligned_cols=135  Identities=19%  Similarity=0.206  Sum_probs=81.9

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCcee-eEEE
Q psy9141           8 SVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRA-RMIH   86 (379)
Q Consensus         8 dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~-~~~~   86 (379)
                      ||+||||||+|+++|+.|++.|++|+|||+.+....     ...  ..++..   .++++++. .+...  .+.. ..+.
T Consensus         1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~~~~-----~~~--~~~~~~---~~~~~~~~-~~~~~--~~~~~~~~~   67 (388)
T TIGR01790         1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPPIPG-----NHT--YGVWDD---DLSDLGLA-DCVEH--VWPDVYEYR   67 (388)
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCC-----Ccc--ccccHh---hhhhhchh-hHHhh--cCCCceEEe
Confidence            899999999999999999999999999999875421     111  123332   23444532 22221  1122 1112


Q ss_pred             ecCCcE-EEeeCCCCCcH-------HHHhcCCCCeEEeCceEEEEEec-CCeEEEEEccCCceeEEEeecEEEecCCCCh
Q psy9141          87 GQNGKL-REIPYDPVHNQ-------VELEQYPDCNIYFQHKLINLDVN-SGNVTFYRTEDNSETKITDNQLIIGADGAYS  157 (379)
Q Consensus        87 ~~~g~~-~~~~~~~~~~~-------~~~~~~~gv~i~~~~~v~~i~~~-~~~v~v~~~~~G~~~~~i~adlVV~AdG~~S  157 (379)
                      ...... ...++......       ..+. ..+++++ .++|++++.+ ++.+.+++. +|++   ++|++||+|||.+|
T Consensus        68 ~~~~~~~~~~~~~~i~~~~l~~~l~~~~~-~~gv~~~-~~~v~~i~~~~~~~~~v~~~-~g~~---~~a~~VI~A~G~~s  141 (388)
T TIGR01790        68 FPKQPRKLGTAYGSVDSTRLHEELLQKCP-EGGVLWL-ERKAIHAEADGVALSTVYCA-GGQR---IQARLVIDARGFGP  141 (388)
T ss_pred             cCCcchhcCCceeEEcHHHHHHHHHHHHH-hcCcEEE-ccEEEEEEecCCceeEEEeC-CCCE---EEeCEEEECCCCch
Confidence            111111 11111111111       2223 3478886 5688888877 567778887 8866   99999999999999


Q ss_pred             HHHH
Q psy9141         158 GVRK  161 (379)
Q Consensus       158 ~vr~  161 (379)
                      .+++
T Consensus       142 ~~~~  145 (388)
T TIGR01790       142 LVQY  145 (388)
T ss_pred             hccc
Confidence            6654

This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.

>PLN02463 lycopene beta cyclase

Probab=99.69  E-value=1.3e-15  Score=151.11  Aligned_cols=139  Identities=18%  Similarity=0.177  Sum_probs=92.7

Q ss_pred             CCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeE
Q psy9141           5 SKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARM   84 (379)
Q Consensus         5 ~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~   84 (379)
                      ..+||+||||||+|+++|+.|++.|++|+|+|+.+.....   ...    ..   -.+.++.+|+.+.+... .+..  .
T Consensus        27 ~~~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~~~~~p---~~~----g~---w~~~l~~lgl~~~l~~~-w~~~--~   93 (447)
T PLN02463         27 RVVDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSPLSIWP---NNY----GV---WVDEFEALGLLDCLDTT-WPGA--V   93 (447)
T ss_pred             cCceEEEECCCHHHHHHHHHHHHCCCeEEEeccCccchhc---ccc----ch---HHHHHHHCCcHHHHHhh-CCCc--E
Confidence            3589999999999999999999999999999997643211   111    11   23567888987765432 2222  2


Q ss_pred             EEecCCc--EEEeeCCCCCcH------HHHhcCCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEEEecCCCC
Q psy9141          85 IHGQNGK--LREIPYDPVHNQ------VELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAY  156 (379)
Q Consensus        85 ~~~~~g~--~~~~~~~~~~~~------~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlVV~AdG~~  156 (379)
                      ++..++.  ....+|......      .......+++++ ..+|++++.+++++.|+++ +|.+   ++||+||+|||.+
T Consensus        94 v~~~~~~~~~~~~~y~~V~R~~L~~~Ll~~~~~~GV~~~-~~~V~~I~~~~~~~~V~~~-dG~~---i~A~lVI~AdG~~  168 (447)
T PLN02463         94 VYIDDGKKKDLDRPYGRVNRKKLKSKMLERCIANGVQFH-QAKVKKVVHEESKSLVVCD-DGVK---IQASLVLDATGFS  168 (447)
T ss_pred             EEEeCCCCccccCcceeEEHHHHHHHHHHHHhhcCCEEE-eeEEEEEEEcCCeEEEEEC-CCCE---EEcCEEEECcCCC
Confidence            2221211  111122222111      111233588886 5699999998888889988 8877   9999999999999


Q ss_pred             hHHHH
Q psy9141         157 SGVRK  161 (379)
Q Consensus       157 S~vr~  161 (379)
                      |.+++
T Consensus       169 s~l~~  173 (447)
T PLN02463        169 RCLVQ  173 (447)
T ss_pred             cCccC
Confidence            98764

>TIGR01789 lycopene_cycl lycopene cyclase

Probab=99.66  E-value=4.2e-15  Score=144.56  Aligned_cols=131  Identities=16%  Similarity=0.229  Sum_probs=73.4

Q ss_pred             cEEEECCChHHHHHHHHHHhC--CCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCC--ChHHHHhCCCCceee
Q psy9141           8 SVVIVGGGLVGSLSACMFAKN--QYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIG--LEDKLLAHGIPMRAR   83 (379)
Q Consensus         8 dVvIVGaGpaGl~~A~~La~~--G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lG--l~~~l~~~~~~~~~~   83 (379)
                      ||+|||||++|+++|+.|++.  |++|+|+|+.+.....     +..  +++....   ...+  .++.+..  ......
T Consensus         1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~~-----~tw--~~~~~~~---~~~~~~~~~~~v~--~~W~~~   68 (370)
T TIGR01789         1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGGN-----HTW--SFFDSDL---SDAQHAWLADLVQ--TDWPGY   68 (370)
T ss_pred             CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCc-----ccc--eeccccc---chhhhhhhhhhhe--EeCCCC
Confidence            899999999999999999987  9999999998643211     100  1111110   0000  1112111  122233


Q ss_pred             EEEecCCcE-EEeeCCCCCcH---HHHhcCCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEEEecCCCChH
Q psy9141          84 MIHGQNGKL-REIPYDPVHNQ---VELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAYSG  158 (379)
Q Consensus        84 ~~~~~~g~~-~~~~~~~~~~~---~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlVV~AdG~~S~  158 (379)
                      .+...+... ...+|......   +.+.+..+..++++++|+++  +++++++  + +|++   ++|++||+|+|.+|.
T Consensus        69 ~v~~~~~~~~l~~~Y~~I~r~~f~~~l~~~l~~~i~~~~~V~~v--~~~~v~l--~-dg~~---~~A~~VI~A~G~~s~  139 (370)
T TIGR01789        69 EVRFPKYRRKLKTAYRSMTSTRFHEGLLQAFPEGVILGRKAVGL--DADGVDL--A-PGTR---INARSVIDCRGFKPS  139 (370)
T ss_pred             EEECcchhhhcCCCceEEEHHHHHHHHHHhhcccEEecCEEEEE--eCCEEEE--C-CCCE---EEeeEEEECCCCCCC
Confidence            343322111 11122111111   22222122337889999988  4455555  5 8887   999999999999974

This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.

>PLN02697 lycopene epsilon cyclase

Probab=99.65  E-value=3.9e-14  Score=142.72  Aligned_cols=132  Identities=20%  Similarity=0.173  Sum_probs=86.2

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeEE
Q psy9141           6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARMI   85 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~~   85 (379)
                      .+||+||||||+|+++|..|++.|++|+|||+......     ..    .++.   ..++.+|+.+.+.. .  +....+
T Consensus       108 ~~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~~p~~~-----n~----GvW~---~~l~~lgl~~~i~~-~--w~~~~v  172 (529)
T PLN02697        108 TLDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTN-----NY----GVWE---DEFKDLGLEDCIEH-V--WRDTIV  172 (529)
T ss_pred             cccEEEECcCHHHHHHHHHHHhCCCcEEEecCcccCCC-----cc----ccch---hHHHhcCcHHHHHh-h--cCCcEE
Confidence            58999999999999999999999999999998532211     11    2332   35777887554432 2  222334


Q ss_pred             EecCCcEEE--eeCCCCCcH------HHHhcCCCCeEEeCceEEEEEecCCeEEE-EEccCCceeEEEeecEEEecCCCC
Q psy9141          86 HGQNGKLRE--IPYDPVHNQ------VELEQYPDCNIYFQHKLINLDVNSGNVTF-YRTEDNSETKITDNQLIIGADGAY  156 (379)
Q Consensus        86 ~~~~g~~~~--~~~~~~~~~------~~~~~~~gv~i~~~~~v~~i~~~~~~v~v-~~~~~G~~~~~i~adlVV~AdG~~  156 (379)
                      +..++....  .+|......      .......++++ .+++|++++.+++++.+ .+. +|.+   ++|++||+|||.+
T Consensus       173 ~~~~~~~~~~~~~Yg~V~R~~L~~~Ll~~a~~~GV~~-~~~~V~~I~~~~~~~~vv~~~-dG~~---i~A~lVI~AdG~~  247 (529)
T PLN02697        173 YLDDDKPIMIGRAYGRVSRTLLHEELLRRCVESGVSY-LSSKVDRITEASDGLRLVACE-DGRV---IPCRLATVASGAA  247 (529)
T ss_pred             EecCCceeeccCcccEEcHHHHHHHHHHHHHhcCCEE-EeeEEEEEEEcCCcEEEEEEc-CCcE---EECCEEEECCCcC
Confidence            333333221  122211111      12223358887 67899999887777653 456 7776   9999999999999


Q ss_pred             h
Q psy9141         157 S  157 (379)
Q Consensus       157 S  157 (379)
                      |
T Consensus       248 S  248 (529)
T PLN02697        248 S  248 (529)
T ss_pred             h
Confidence            9

>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan

Probab=99.62  E-value=2.5e-15  Score=149.67  Aligned_cols=144  Identities=19%  Similarity=0.263  Sum_probs=90.0

Q ss_pred             cEEEECCChHHHHHHHHHHhCC---CcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHH--HHhC-CCCce
Q psy9141           8 SVVIVGGGLVGSLSACMFAKNQ---YEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDK--LLAH-GIPMR   81 (379)
Q Consensus         8 dVvIVGaGpaGl~~A~~La~~G---~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~--l~~~-~~~~~   81 (379)
                      ||+|||||+||.++|..|++.+   ++|+|||+...+...   -|.    ++.|....+++.+|+.+.  +.+. +..-.
T Consensus         1 ~v~IvGgG~aG~~~A~~L~~~~~~~~~v~lie~~~~~~~~---vGe----~~~p~~~~~~~~lgi~e~~~~~~~~~~~k~   73 (454)
T PF04820_consen    1 DVVIVGGGTAGWMAAAALARAGPDALSVTLIESPDIPRIG---VGE----STLPSLRPFLRRLGIDEADFMRACDATFKL   73 (454)
T ss_dssp             EEEEE--SHHHHHHHHHHHHHCTCSSEEEEEE-SSS---S---SEE----E--THHHHCHHHHT--HHHHCHHCT-EEES
T ss_pred             CEEEECCCHHHHHHHHHHHHhCCCCcEEEEEecCCCCCCC---ccc----cchHHHHHHHHHcCCChHHHHHHhCCeEec
Confidence            7999999999999999999998   899999999866421   244    356778889999999876  4443 33334


Q ss_pred             eeEEEecC--CcEEEeeCCCCCc--------H------------------------------------------------
Q psy9141          82 ARMIHGQN--GKLREIPYDPVHN--------Q------------------------------------------------  103 (379)
Q Consensus        82 ~~~~~~~~--g~~~~~~~~~~~~--------~------------------------------------------------  103 (379)
                      +..+.+..  +.....+|+....        +                                                
T Consensus        74 g~~f~~w~~~~~~~~~~f~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ayhlDR  153 (454)
T PF04820_consen   74 GIRFVNWGERGESYFHPFGSYGPPIDGVDFHHYWLRLRAAGFDGPFSDFSLSAALAKQGRFAPPPEDFLSPFNYAYHLDR  153 (454)
T ss_dssp             EEEEESSSSCCSEEEEESS---TEETTEEHHHHHHHHHHTTCCSHHHHHHHCHHHHHHTTBTSB-TTSTBTSS-EEEEEH
T ss_pred             cEEeeecCCCCCceEeeccccCCCCCCccHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCCCCCcccccCCCCeeEEEeH
Confidence            55554432  3334445533100        0                                                


Q ss_pred             -------HHHhcCCCCeEEeCceEEEEEecCCe-E-EEEEccCCceeEEEeecEEEecCCCChHHHHHh
Q psy9141         104 -------VELEQYPDCNIYFQHKLINLDVNSGN-V-TFYRTEDNSETKITDNQLIIGADGAYSGVRKCL  163 (379)
Q Consensus       104 -------~~~~~~~gv~i~~~~~v~~i~~~~~~-v-~v~~~~~G~~~~~i~adlVV~AdG~~S~vr~~l  163 (379)
                             ...+...||+++.++ |+++..++++ + .|++. +|++   ++||+||+|+|+.|.+.+..
T Consensus       154 ~~fd~~L~~~A~~~Gv~~~~g~-V~~v~~~~~g~i~~v~~~-~g~~---i~ad~~IDASG~~s~L~~~~  217 (454)
T PF04820_consen  154 AKFDQFLRRHAEERGVEVIEGT-VVDVELDEDGRITAVRLD-DGRT---IEADFFIDASGRRSLLARKA  217 (454)
T ss_dssp             HHHHHHHHHHHHHTT-EEEET--EEEEEE-TTSEEEEEEET-TSEE---EEESEEEE-SGGG-CCCCCC
T ss_pred             HHHHHHHHHHHhcCCCEEEeCE-EEEEEEcCCCCEEEEEEC-CCCE---EEEeEEEECCCccchhhHhh
Confidence                   233444699999885 7887776654 3 47787 8887   99999999999999876664

This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....

>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins

Probab=99.56  E-value=3.3e-13  Score=131.58  Aligned_cols=266  Identities=14%  Similarity=0.120  Sum_probs=138.5

Q ss_pred             cEEEECCChHHHHHHHHH--HhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeEE
Q psy9141           8 SVVIVGGGLVGSLSACMF--AKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARMI   85 (379)
Q Consensus         8 dVvIVGaGpaGl~~A~~L--a~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~~   85 (379)
                      ||+||||||||+++|+.|  ++.|.+|+|||+.+......   .+..  +.+.      ..++.++.+....+  ....+
T Consensus         1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~~~~~---~~tW--~~~~------~~~~~~~~~v~~~w--~~~~v   67 (374)
T PF05834_consen    1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKPPWPN---DRTW--CFWE------KDLGPLDSLVSHRW--SGWRV   67 (374)
T ss_pred             CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccccccC---Cccc--cccc------ccccchHHHHheec--CceEE
Confidence            899999999999999999  88899999999987652110   1100  1111      11222344433333  34455


Q ss_pred             EecCCcEEEeeCCCCC-cH-------HHHhcCCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEEEecCCCCh
Q psy9141          86 HGQNGKLREIPYDPVH-NQ-------VELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAYS  157 (379)
Q Consensus        86 ~~~~g~~~~~~~~~~~-~~-------~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlVV~AdG~~S  157 (379)
                      +..++......+.+.. ..       ..... .+..++.+++|++|+.+++.+.+.++ +|++   ++|++||+|+|..|
T Consensus        68 ~~~~~~~~~~~~~Y~~i~~~~f~~~l~~~~~-~~~~~~~~~~V~~i~~~~~~~~v~~~-~g~~---i~a~~VvDa~g~~~  142 (374)
T PF05834_consen   68 YFPDGSRILIDYPYCMIDRADFYEFLLERAA-AGGVIRLNARVTSIEETGDGVLVVLA-DGRT---IRARVVVDARGPSS  142 (374)
T ss_pred             EeCCCceEEcccceEEEEHHHHHHHHHHHhh-hCCeEEEccEEEEEEecCceEEEEEC-CCCE---EEeeEEEECCCccc
Confidence            5544433222211111 11       11122 34467788999999999998888888 8987   99999999999776


Q ss_pred             HHHHHhhhcCCCCccceeeeeeeEEEeeCCCCCccccccccceeeecC---CCCeEEEEEecCCCceee----ecCCC-C
Q psy9141         158 GVRKCLMKQSMFNYSQTYIEHGYMELCIPPSEDNEVWLYKNRLLSSVP---EVRKRISLRAQSLKSLMN----FPRAD-Q  229 (379)
Q Consensus       158 ~vr~~l~~~~~~~~~~~~i~~~~~~~~~p~~~~~~~~~~p~~~~~~~p---~~~~~~~~~~~~~~~~~~----~p~~~-~  229 (379)
                      ...+..       .-|.+..+. .+...|........+++    ...+   +...-+++-|...++.+.    +.... .
T Consensus       143 ~~~~~~-------~~Q~f~G~~-v~~~~~~f~~~~~~lMD----~r~~~~~~~~~F~Y~lP~~~~~alvE~T~fs~~~~~  210 (374)
T PF05834_consen  143 PKARPL-------GLQHFYGWE-VETDEPVFDPDTATLMD----FRVPQSADGPSFLYVLPFSEDRALVEETSFSPRPAL  210 (374)
T ss_pred             cccccc-------ccceeEEEE-EeccCCCCCCCceEEEE----ecccCCCCCceEEEEEEcCCCeEEEEEEEEcCCCCC
Confidence            521111       112222111 12212210111111111    1111   111233444555444442    22211 1


Q ss_pred             C-CChhhhcccccccccccCCcccCCCccccCCC--CCcc-c-cCCcEEEe-eecccCCCcchhhhhHHHHHHHHHHhhc
Q psy9141         230 G-GDKRDCLLHEGTSRILVPNMRLSNHLDRDQPC--KPLL-D-FKNPIKIQ-SHAVVNEFYKQESLIVASLCQEKIEKMF  303 (379)
Q Consensus       230 ~-~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~--~~~~-~-~~~~~liG-Ah~~~~P~~GQG~n~gl~Da~~L~~~l~  303 (379)
                      . .+..+.+...-.. ................|+  .+.. . ..++..|| |..++||.+|=++..+++.+..+++.+.
T Consensus       211 ~~~~~~~~l~~~l~~-~g~~~~~i~~~E~G~IPm~~~~~~~~~~~~v~~iG~agG~v~PsTGYs~~~~~~~a~~ia~~l~  289 (374)
T PF05834_consen  211 PEEELKARLRRYLER-LGIDDYEILEEERGVIPMTTGGFPPRFGQRVIRIGTAGGMVKPSTGYSFARIQRQADAIADALA  289 (374)
T ss_pred             CHHHHHHHHHHHHHH-cCCCceeEEEeecceeecccCCCccccCCCeeeEEccccCCCCcccHHHHHHHHHHHHHHHHHh
Confidence            1 1122222111000 000000000012233455  1111 1 23789999 8888889999999999999999999987


Q ss_pred             c
Q psy9141         304 D  304 (379)
Q Consensus       304 ~  304 (379)
                      +
T Consensus       290 ~  290 (374)
T PF05834_consen  290 K  290 (374)
T ss_pred             h
Confidence            5

Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process

>COG2081 Predicted flavoproteins [General function prediction only]

Probab=99.43  E-value=3.5e-13  Score=127.48  Aligned_cols=145  Identities=18%  Similarity=0.189  Sum_probs=91.8

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCC--CCCCcccccccCHHHHHHHHHCC-----ChHHHHhC
Q psy9141           4 NSKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSG--LSEGKSINLALSVRGREALRRIG-----LEDKLLAH   76 (379)
Q Consensus         4 m~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~--~~~g~~i~~al~~~~~~~l~~lG-----l~~~l~~~   76 (379)
                      |+.+||+||||||||+++|..++++|.+|+|||+.+.+...=  +..|| .+++-.....+++.+..     +...+. .
T Consensus         1 ~~~~dviIIGgGpAGlMaA~~aa~~G~~V~lid~~~k~GrKil~sGgGr-CN~Tn~~~~~~~ls~~p~~~~fl~sal~-~   78 (408)
T COG2081           1 MERFDVIIIGGGPAGLMAAISAAKAGRRVLLIDKGPKLGRKILMSGGGR-CNFTNSEAPDEFLSRNPGNGHFLKSALA-R   78 (408)
T ss_pred             CCcceEEEECCCHHHHHHHHHHhhcCCEEEEEecCccccceeEecCCCC-ccccccccHHHHHHhCCCcchHHHHHHH-h
Confidence            346899999999999999999999999999999998764220  11122 12222222334444432     111111 1


Q ss_pred             CCCc--------eeeEEEec-CCcEEEeeCCCCC-cH------HHHhcCCCCeEEeCceEEEEEecCCeEEEEEccCCce
Q psy9141          77 GIPM--------RARMIHGQ-NGKLREIPYDPVH-NQ------VELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSE  140 (379)
Q Consensus        77 ~~~~--------~~~~~~~~-~g~~~~~~~~~~~-~~------~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~  140 (379)
                      -.+.        .++..+.. .|+    -|.... .+      ....+..||+|+.+++|.+++.++.+..+.+. +|++
T Consensus        79 ft~~d~i~~~e~~Gi~~~e~~~Gr----~Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~~~f~l~t~-~g~~  153 (408)
T COG2081          79 FTPEDFIDWVEGLGIALKEEDLGR----MFPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEKDDSGFRLDTS-SGET  153 (408)
T ss_pred             CCHHHHHHHHHhcCCeeEEccCce----ecCCccchHHHHHHHHHHHHHcCcEEEecceEEeEEecCceEEEEcC-CCCE
Confidence            1111        11222221 122    122211 11      22234479999999999999999989999998 9986


Q ss_pred             eEEEeecEEEecCCCChH
Q psy9141         141 TKITDNQLIIGADGAYSG  158 (379)
Q Consensus       141 ~~~i~adlVV~AdG~~S~  158 (379)
                         ++||-+|.|+|..|.
T Consensus       154 ---i~~d~lilAtGG~S~  168 (408)
T COG2081         154 ---VKCDSLILATGGKSW  168 (408)
T ss_pred             ---EEccEEEEecCCcCC
Confidence               999999999999884

>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional

Probab=99.40  E-value=3.8e-12  Score=117.52  Aligned_cols=145  Identities=15%  Similarity=0.192  Sum_probs=88.6

Q ss_pred             CCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCccc-ccccCHHHHHHHHHCCChHHHHhCCCCceee
Q psy9141           5 SKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSI-NLALSVRGREALRRIGLEDKLLAHGIPMRAR   83 (379)
Q Consensus         5 ~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i-~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~   83 (379)
                      .++||+||||||+|+++|+.|++.|++|+|+|+.+.+...-...+... ...+......+|+++|+.-         .. 
T Consensus        24 ~~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~~Ggg~~~gg~~~~~~~v~~~~~~~l~~~gv~~---------~~-   93 (257)
T PRK04176         24 LEVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFGGGMWGGGMLFNKIVVQEEADEILDEFGIRY---------KE-   93 (257)
T ss_pred             ccCCEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCCccccCccccccccchHHHHHHHHHCCCCc---------ee-
Confidence            468999999999999999999999999999999876542100001000 0123445566777766521         10 


Q ss_pred             EEEecCCcEEEeeCCCCCcH-HHHhcCCCCeEEeCceEEEEEecCC-eEE-EEEc-----cCC---ceeEEEeecEEEec
Q psy9141          84 MIHGQNGKLREIPYDPVHNQ-VELEQYPDCNIYFQHKLINLDVNSG-NVT-FYRT-----EDN---SETKITDNQLIIGA  152 (379)
Q Consensus        84 ~~~~~~g~~~~~~~~~~~~~-~~~~~~~gv~i~~~~~v~~i~~~~~-~v~-v~~~-----~~G---~~~~~i~adlVV~A  152 (379)
                        . ..+. ...+....... ...+...|++++++++|+++..+++ .+. +...     .+|   +..+ ++|++||+|
T Consensus        94 --~-~~g~-~~vd~~~l~~~L~~~A~~~Gv~I~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g~~~~~~~-i~Ak~VI~A  168 (257)
T PRK04176         94 --V-EDGL-YVADSVEAAAKLAAAAIDAGAKIFNGVSVEDVILREDPRVAGVVINWTPVEMAGLHVDPLT-IEAKAVVDA  168 (257)
T ss_pred             --e-cCcc-eeccHHHHHHHHHHHHHHcCCEEEcCceeceeeEeCCCcEEEEEEccccccccCCCCCcEE-EEcCEEEEE
Confidence              0 1111 10000000000 2223346999999999999987555 332 2111     012   2234 999999999


Q ss_pred             CCCChHHHHHhh
Q psy9141         153 DGAYSGVRKCLM  164 (379)
Q Consensus       153 dG~~S~vr~~l~  164 (379)
                      +|.+|.+.+.+.
T Consensus       169 TG~~a~v~~~l~  180 (257)
T PRK04176        169 TGHDAEVVSVLA  180 (257)
T ss_pred             eCCCcHHHHHHH
Confidence            999999998884

>TIGR00292 thiazole biosynthesis enzyme

Probab=99.39  E-value=8.3e-12  Score=114.95  Aligned_cols=146  Identities=16%  Similarity=0.206  Sum_probs=88.6

Q ss_pred             CCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCccc-ccccCHHHHHHHHHCCChHHHHhCCCCceee
Q psy9141           5 SKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSI-NLALSVRGREALRRIGLEDKLLAHGIPMRAR   83 (379)
Q Consensus         5 ~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i-~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~   83 (379)
                      .++||+||||||+||++|+.|++.|++|+|+||...........+... ...+.....++++.+|+.-         .. 
T Consensus        20 ~~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~Ggg~~~gg~~~~~~~~~~~~~~~l~~~gi~~---------~~-   89 (254)
T TIGR00292        20 AESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFGGGSWGGGMLFSKIVVEKPAHEILDEFGIRY---------ED-   89 (254)
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCccccCCCcceecccccchHHHHHHHCCCCe---------ee-
Confidence            468999999999999999999999999999999986642211111000 0113344556666665421         10 


Q ss_pred             EEEecCCcEEEeeCCCCCcH-HHHhcCCCCeEEeCceEEEEEecCC--eEE-EEEc-----cCC---ceeEEEeecEEEe
Q psy9141          84 MIHGQNGKLREIPYDPVHNQ-VELEQYPDCNIYFQHKLINLDVNSG--NVT-FYRT-----EDN---SETKITDNQLIIG  151 (379)
Q Consensus        84 ~~~~~~g~~~~~~~~~~~~~-~~~~~~~gv~i~~~~~v~~i~~~~~--~v~-v~~~-----~~G---~~~~~i~adlVV~  151 (379)
                         ...+... .+....... .......+++++.++.|+++..+++  .+. +...     .+|   +..+ ++|++||+
T Consensus        90 ---~~~g~~~-~~~~el~~~L~~~a~e~GV~I~~~t~V~dli~~~~~~~V~GVv~~~~~v~~~g~~~d~~~-i~Ak~VVd  164 (254)
T TIGR00292        90 ---EGDGYVV-ADSAEFISTLASKALQAGAKIFNGTSVEDLITRDDTVGVAGVVINWSAIELAGLHVDPLT-QRSRVVVD  164 (254)
T ss_pred             ---ccCceEE-eeHHHHHHHHHHHHHHcCCEEECCcEEEEEEEeCCCCceEEEEeCCccccccCCCCCCEE-EEcCEEEE
Confidence               0011100 000000000 1222335899999999999987666  232 2221     012   2345 99999999


Q ss_pred             cCCCChHHHHHhhh
Q psy9141         152 ADGAYSGVRKCLMK  165 (379)
Q Consensus       152 AdG~~S~vr~~l~~  165 (379)
                      |+|..|.+.+++..
T Consensus       165 ATG~~a~v~~~l~~  178 (254)
T TIGR00292       165 ATGHDAEIVAVCAK  178 (254)
T ss_pred             eecCCchHHHHHHH
Confidence            99999999888743

This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.

>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional

Probab=99.29  E-value=1.1e-11  Score=125.58  Aligned_cols=155  Identities=20%  Similarity=0.231  Sum_probs=91.6

Q ss_pred             CCCCCCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCC--h-------H
Q psy9141           1 MKCNSKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGL--E-------D   71 (379)
Q Consensus         1 M~~m~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl--~-------~   71 (379)
                      |+++.++||+|||||++|+++|+.|+++|++|+|+||.+.....+....+     +-+.+.++++...+  .       .
T Consensus         1 ~~~~~~~DVvIIGGGi~G~~~A~~la~rG~~V~LlEk~d~~~GtS~~ss~-----lihgg~ryl~~~~~~l~~e~~~e~~   75 (502)
T PRK13369          1 MAEPETYDLFVIGGGINGAGIARDAAGRGLKVLLCEKDDLAQGTSSRSGK-----LVHGGLRYLEYYEFRLVREALIERE   75 (502)
T ss_pred             CCCCcccCEEEECCCHHHHHHHHHHHhCCCcEEEEECCCCCCCCchhhhh-----hHHHHHHHHHhccHHHHHHHHHHHH
Confidence            55456799999999999999999999999999999999765433322222     23444444443221  0       0


Q ss_pred             HHHhCC----CCceeeEEEec-C-----------------C------cEEEee-------------------C-CCCCc-
Q psy9141          72 KLLAHG----IPMRARMIHGQ-N-----------------G------KLREIP-------------------Y-DPVHN-  102 (379)
Q Consensus        72 ~l~~~~----~~~~~~~~~~~-~-----------------g------~~~~~~-------------------~-~~~~~-  102 (379)
                      .+....    .+.. +.+... .                 +      ....+.                   + +.... 
T Consensus        76 ~l~~~ap~l~~~~~-~~~~~~~~~~~~~~~~~g~~ly~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~a~~~~dg~vd~  154 (502)
T PRK13369         76 VLLAAAPHIIWPMR-FVLPHSPEDRPAWLVRLGLFLYDHLGGRKRLPGTRTLDLRRDPEGAPLKPEYTKGFEYSDCWVDD  154 (502)
T ss_pred             HHHHhCCccccccc-eEEecccccccHHHHHHHHHHHHhccCCCCCCcceEechhhccccCCchHhcCEEEEEcCeeecH
Confidence            111110    0000 000000 0                 0      000000                   0 00000 


Q ss_pred             H------HHHhcCCCCeEEeCceEEEEEecCCeEEEEEccC--CceeEEEeecEEEecCCCChH-HHHHh
Q psy9141         103 Q------VELEQYPDCNIYFQHKLINLDVNSGNVTFYRTED--NSETKITDNQLIIGADGAYSG-VRKCL  163 (379)
Q Consensus       103 ~------~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~--G~~~~~i~adlVV~AdG~~S~-vr~~l  163 (379)
                      .      ...+...|++++.+++|+++..+++.+.+++. +  |++.+ ++|+.||.|+|.+|. +.+.+
T Consensus       155 ~rl~~~l~~~a~~~Ga~i~~~~~V~~i~~~~~~~~v~~~-~~~g~~~~-i~a~~VVnAaG~wa~~l~~~~  222 (502)
T PRK13369        155 ARLVVLNALDAAERGATILTRTRCVSARREGGLWRVETR-DADGETRT-VRARALVNAAGPWVTDVIHRV  222 (502)
T ss_pred             HHHHHHHHHHHHHCCCEEecCcEEEEEEEcCCEEEEEEE-eCCCCEEE-EEecEEEECCCccHHHHHhhc
Confidence            0      23345579999999999999988877777655 3  44455 999999999999984 44433

>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed

Probab=99.27  E-value=1.3e-10  Score=117.72  Aligned_cols=44  Identities=23%  Similarity=0.254  Sum_probs=38.5

Q ss_pred             CCCCCCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCC
Q psy9141           1 MKCNSKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNS   44 (379)
Q Consensus         1 M~~m~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~   44 (379)
                      |.++..+||+|||||++|+++|+.|+++|++|+|+||.+.....
T Consensus         1 ~~~~~~~DVvIIGGGi~G~~~A~~la~rGl~V~LvEk~d~~~Gt   44 (508)
T PRK12266          1 MTMMETYDLLVIGGGINGAGIARDAAGRGLSVLLCEQDDLASAT   44 (508)
T ss_pred             CCCCCcCCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCc
Confidence            55556799999999999999999999999999999998755433

>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1

Probab=99.26  E-value=3.1e-11  Score=115.96  Aligned_cols=47  Identities=26%  Similarity=0.349  Sum_probs=38.6

Q ss_pred             cCCCCeEEeCceEEEEEecCCeEE-EEEccCCceeEEEeecEEEecCCCChHH
Q psy9141         108 QYPDCNIYFQHKLINLDVNSGNVT-FYRTEDNSETKITDNQLIIGADGAYSGV  159 (379)
Q Consensus       108 ~~~gv~i~~~~~v~~i~~~~~~v~-v~~~~~G~~~~~i~adlVV~AdG~~S~v  159 (379)
                      +..|++++.+++|++++.++++|+ |.+. +|+    ++||.||.|+|.+|..
T Consensus       158 ~~~Gv~i~~~~~V~~i~~~~~~v~gv~~~-~g~----i~ad~vV~a~G~~s~~  205 (358)
T PF01266_consen  158 QRAGVEIRTGTEVTSIDVDGGRVTGVRTS-DGE----IRADRVVLAAGAWSPQ  205 (358)
T ss_dssp             HHTT-EEEESEEEEEEEEETTEEEEEEET-TEE----EEECEEEE--GGGHHH
T ss_pred             HHhhhhccccccccchhhccccccccccc-ccc----cccceeEeccccccee
Confidence            335999999999999999999998 8888 775    8999999999999844

1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....

>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases

Probab=99.25  E-value=5.6e-11  Score=116.49  Aligned_cols=142  Identities=19%  Similarity=0.272  Sum_probs=72.7

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCC--CCCCCcc-----------cccc---cCHHHHHHHHHCCCh
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNS--GLSEGKS-----------INLA---LSVRGREALRRIGLE   70 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~--~~~~g~~-----------i~~a---l~~~~~~~l~~lGl~   70 (379)
                      |||+||||||+||++|+.|++.|.+|+|+||.+.....  -...||.           ....   -..-....|++++..
T Consensus         1 ydviIIGgGaAGl~aA~~aa~~g~~V~vlE~~~~~gkKil~tG~GrCN~tn~~~~~~~~~~~~~~~~~f~~~~l~~f~~~   80 (409)
T PF03486_consen    1 YDVIIIGGGAAGLMAAITAAEKGARVLVLERNKRVGKKILITGNGRCNLTNLNIDPSEFLSGYGRNPKFLKSALKRFSPE   80 (409)
T ss_dssp             -SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS-HHHHHCGGGT-EEEETTSSGGGEECS-TBTTTCTHHHHHHS-HH
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCcccccceeecCCCCccccccccchhhHhhhcccchHHHHHHHhcCCHH
Confidence            79999999999999999999999999999999865310  0000110           0000   001123345554422


Q ss_pred             ---HHHHhCCCCceeeEEEecCCcEEEeeCCCCCcH-----HHHhcCCCCeEEeCceEEEEEecCCe-EEEEEccCCcee
Q psy9141          71 ---DKLLAHGIPMRARMIHGQNGKLREIPYDPVHNQ-----VELEQYPDCNIYFQHKLINLDVNSGN-VTFYRTEDNSET  141 (379)
Q Consensus        71 ---~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-----~~~~~~~gv~i~~~~~v~~i~~~~~~-v~v~~~~~G~~~  141 (379)
                         .-+.+.+.+..    ...+++.  +|.......     ....+..+++|+++++|++++.++++ +.|.+. ++.+ 
T Consensus        81 d~~~ff~~~Gv~~~----~~~~gr~--fP~s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~f~v~~~-~~~~-  152 (409)
T PF03486_consen   81 DLIAFFEELGVPTK----IEEDGRV--FPKSDKASSVVDALLEELKRLGVEIHFNTRVKSIEKKEDGVFGVKTK-NGGE-  152 (409)
T ss_dssp             HHHHHHHHTT--EE----E-STTEE--EETT--HHHHHHHHHHHHHHHT-EEE-S--EEEEEEETTEEEEEEET-TTEE-
T ss_pred             HHHHHHHhcCCeEE----EcCCCEE--CCCCCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeeecCCceeEeecc-Cccc-
Confidence               22223333321    1234432  233222111     12223469999999999999988877 778886 6666 


Q ss_pred             EEEeecEEEecCCCChH
Q psy9141         142 KITDNQLIIGADGAYSG  158 (379)
Q Consensus       142 ~~i~adlVV~AdG~~S~  158 (379)
                        +.||.||.|+|..|.
T Consensus       153 --~~a~~vILAtGG~S~  167 (409)
T PF03486_consen  153 --YEADAVILATGGKSY  167 (409)
T ss_dssp             --EEESEEEE----SSS
T ss_pred             --ccCCEEEEecCCCCc
Confidence              999999999999873

; PDB: 2I0Z_A 3V76_A 2GQF_A.

>PRK11259 solA N-methyltryptophan oxidase; Provisional

Probab=99.25  E-value=1.1e-10  Score=113.84  Aligned_cols=46  Identities=13%  Similarity=0.323  Sum_probs=39.8

Q ss_pred             cCCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEEEecCCCChH
Q psy9141         108 QYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAYSG  158 (379)
Q Consensus       108 ~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlVV~AdG~~S~  158 (379)
                      ...+++++++++|++++.+++++.++++ +| +   ++||.||.|+|.++.
T Consensus       160 ~~~gv~i~~~~~v~~i~~~~~~~~v~~~-~g-~---~~a~~vV~A~G~~~~  205 (376)
T PRK11259        160 REAGAELLFNEPVTAIEADGDGVTVTTA-DG-T---YEAKKLVVSAGAWVK  205 (376)
T ss_pred             HHCCCEEECCCEEEEEEeeCCeEEEEeC-CC-E---EEeeEEEEecCcchh
Confidence            3469999999999999988888888877 77 4   899999999999874

>TIGR01377 soxA_mon sarcosine oxidase, monomeric form

Probab=99.23  E-value=1.7e-10  Score=112.61  Aligned_cols=51  Identities=14%  Similarity=0.150  Sum_probs=41.5

Q ss_pred             cCCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEEEecCCCCh-HHHHHh
Q psy9141         108 QYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAYS-GVRKCL  163 (379)
Q Consensus       108 ~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlVV~AdG~~S-~vr~~l  163 (379)
                      +..+++++.+++|++++.+++.+.+++. +| +   +.||.||.|+|.++ .+++.+
T Consensus       156 ~~~g~~~~~~~~V~~i~~~~~~~~v~~~-~~-~---i~a~~vV~aaG~~~~~l~~~~  207 (380)
T TIGR01377       156 EAHGATVRDGTKVVEIEPTELLVTVKTT-KG-S---YQANKLVVTAGAWTSKLLSPL  207 (380)
T ss_pred             HHcCCEEECCCeEEEEEecCCeEEEEeC-CC-E---EEeCEEEEecCcchHHHhhhc
Confidence            3469999999999999988888888776 65 4   89999999999874 566655

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]

Probab=99.20  E-value=2.4e-10  Score=99.73  Aligned_cols=142  Identities=15%  Similarity=0.235  Sum_probs=88.3

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCccc--ccccCHHHHHHHHHCCChHHHHhCCCCceee
Q psy9141           6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSI--NLALSVRGREALRRIGLEDKLLAHGIPMRAR   83 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i--~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~   83 (379)
                      ..||+||||||+||++|+.||+.|++|+|+||+-.+... .+-|...  .+.+...+.++|+++|+.-+-.+.     +.
T Consensus        30 esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GGG-~w~GGmlf~~iVv~~~a~~iL~e~gI~ye~~e~-----g~  103 (262)
T COG1635          30 ESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGG-IWGGGMLFNKIVVREEADEILDEFGIRYEEEED-----GY  103 (262)
T ss_pred             hccEEEECcCcchHHHHHHHHhCCceEEEEEeecccCCc-ccccccccceeeecchHHHHHHHhCCcceecCC-----ce
Confidence            469999999999999999999999999999999766422 1111100  012455788888888862111000     01


Q ss_pred             EEEecCCcEEEeeCCCCCcH-HHHhcCCCCeEEeCceEEEEEecCC-eEE-EEEc-----cCC---ceeEEEeecEEEec
Q psy9141          84 MIHGQNGKLREIPYDPVHNQ-VELEQYPDCNIYFQHKLINLDVNSG-NVT-FYRT-----EDN---SETKITDNQLIIGA  152 (379)
Q Consensus        84 ~~~~~~g~~~~~~~~~~~~~-~~~~~~~gv~i~~~~~v~~i~~~~~-~v~-v~~~-----~~G---~~~~~i~adlVV~A  152 (379)
                      .+.+..      .+.   .. ...+-..+++|+.+..|+++...++ +|. +...     ..+   +..+ ++|++||+|
T Consensus       104 ~v~ds~------e~~---skl~~~a~~aGaki~n~~~veDvi~r~~~rVaGvVvNWt~V~~~~lhvDPl~-i~a~~VvDa  173 (262)
T COG1635         104 YVADSA------EFA---SKLAARALDAGAKIFNGVSVEDVIVRDDPRVAGVVVNWTPVQMAGLHVDPLT-IRAKAVVDA  173 (262)
T ss_pred             EEecHH------HHH---HHHHHHHHhcCceeeecceEEEEEEecCCceEEEEEecchhhhcccccCcce-eeEEEEEeC
Confidence            111100      000   11 1222345899999999999877666 433 1110     011   1234 899999999


Q ss_pred             CCCChHHHHHh
Q psy9141         153 DGAYSGVRKCL  163 (379)
Q Consensus       153 dG~~S~vr~~l  163 (379)
                      +|.-..+-+.+
T Consensus       174 TGHda~v~~~~  184 (262)
T COG1635         174 TGHDAEVVSFL  184 (262)
T ss_pred             CCCchHHHHHH
Confidence            99998777665

>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated

Probab=99.20  E-value=3.3e-10  Score=114.90  Aligned_cols=143  Identities=19%  Similarity=0.250  Sum_probs=83.8

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCC-CCCCCCCCCCcccccccC-HHHHHHHHHCC-ChHHHHhC-CCC
Q psy9141           4 NSKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEARE-DIRNSGLSEGKSINLALS-VRGREALRRIG-LEDKLLAH-GIP   79 (379)
Q Consensus         4 m~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~-~~~~~~~~~g~~i~~al~-~~~~~~l~~lG-l~~~l~~~-~~~   79 (379)
                      +.+|||+||||||||+.+|+.+++.|.+|+++|+.. .....+  +.-.+. .+. ....+.++.+| +....... +..
T Consensus         2 ~~~yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~d~iG~m~--CnpsiG-G~akg~lvrEidalGg~~g~~~d~~giq   78 (618)
T PRK05192          2 PEEYDVIVVGGGHAGCEAALAAARMGAKTLLLTHNLDTIGQMS--CNPAIG-GIAKGHLVREIDALGGEMGKAIDKTGIQ   78 (618)
T ss_pred             CccceEEEECchHHHHHHHHHHHHcCCcEEEEecccccccccC--Cccccc-cchhhHHHHHHHhcCCHHHHHHhhccCc
Confidence            457999999999999999999999999999999884 221110  011110 011 12233345554 22222222 221


Q ss_pred             ceeeEEEec-CCcEEEeeCCCCCcH-------HHHhcCCCCeEEeCceEEEEEecCCeEE-EEEccCCceeEEEeecEEE
Q psy9141          80 MRARMIHGQ-NGKLREIPYDPVHNQ-------VELEQYPDCNIYFQHKLINLDVNSGNVT-FYRTEDNSETKITDNQLII  150 (379)
Q Consensus        80 ~~~~~~~~~-~g~~~~~~~~~~~~~-------~~~~~~~gv~i~~~~~v~~i~~~~~~v~-v~~~~~G~~~~~i~adlVV  150 (379)
                         ..+.+. .|.....+.......       ..+...++++++ ...|+++..+++.+. |.+. +|..   +.|+.||
T Consensus        79 ---~r~ln~skGpAV~s~RaQiDr~ly~kaL~e~L~~~~nV~I~-q~~V~~Li~e~grV~GV~t~-dG~~---I~Ak~VI  150 (618)
T PRK05192         79 ---FRMLNTSKGPAVRALRAQADRKLYRAAMREILENQPNLDLF-QGEVEDLIVENGRVVGVVTQ-DGLE---FRAKAVV  150 (618)
T ss_pred             ---eeecccCCCCceeCcHHhcCHHHHHHHHHHHHHcCCCcEEE-EeEEEEEEecCCEEEEEEEC-CCCE---EECCEEE
Confidence               122221 111111111011000       334456789985 567888887777665 6777 8877   9999999


Q ss_pred             ecCCCCh
Q psy9141         151 GADGAYS  157 (379)
Q Consensus       151 ~AdG~~S  157 (379)
                      .|+|.++
T Consensus       151 lATGTFL  157 (618)
T PRK05192        151 LTTGTFL  157 (618)
T ss_pred             EeeCcch
Confidence            9999876

>COG0579 Predicted dehydrogenase [General function prediction only]

Probab=99.19  E-value=2.3e-10  Score=111.57  Aligned_cols=157  Identities=18%  Similarity=0.302  Sum_probs=88.6

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHhCC--CcEEEEccCCCCCCC-CCCCCcccccccC--HH-HHHHHHHCC--ChHHHHh
Q psy9141           4 NSKKSVVIVGGGLVGSLSACMFAKNQ--YEVNLYEAREDIRNS-GLSEGKSINLALS--VR-GREALRRIG--LEDKLLA   75 (379)
Q Consensus         4 m~~~dVvIVGaGpaGl~~A~~La~~G--~~V~viE~~~~~~~~-~~~~g~~i~~al~--~~-~~~~l~~lG--l~~~l~~   75 (379)
                      |.++||+|||||+.|+++|+.|++.+  ++|+|+||...+... +......||-++.  +. ...=+...|  .+.++.+
T Consensus         1 ~~~~DvvIIGgGI~G~a~a~~Ls~~~p~~~V~llEk~~~~a~~sS~~NSgviHag~~y~p~slka~l~~~g~~~~~~~~k   80 (429)
T COG0579           1 MMDYDVVIIGGGIMGAATAYELSEYEPDLSVALLEKEDGVAQESSSNNSGVIHAGLYYTPGSLKAKLCVAGNINEFAICK   80 (429)
T ss_pred             CCceeEEEECCcHHHHHHHHHHHHhCCCceEEEEEccCccccccccCcccceeccccCCCcchhhHHHHHHHHHHHHHHH
Confidence            34689999999999999999999998  999999999877633 2233333333321  11 000011111  0111111


Q ss_pred             C-CCCc---eeeEEEecCCcE---------------------------EEeeC-------------CCCCcH-------H
Q psy9141          76 H-GIPM---RARMIHGQNGKL---------------------------REIPY-------------DPVHNQ-------V  104 (379)
Q Consensus        76 ~-~~~~---~~~~~~~~~g~~---------------------------~~~~~-------------~~~~~~-------~  104 (379)
                      + ..+.   ..+.+...+...                           ...|.             ....+.       .
T Consensus        81 q~~~~f~~~g~l~vA~~e~e~~~L~~l~~~~~~ngv~~~~~ld~~~i~~~eP~l~~~~~aal~~p~~giV~~~~~t~~l~  160 (429)
T COG0579          81 QLGIPFINCGKLSVATGEEEVERLEKLYERGKANGVFDLEILDKEEIKELEPLLNEGAVAALLVPSGGIVDPGELTRALA  160 (429)
T ss_pred             HhCCcccccCeEEEEEChHHHHHHHHHHHHHhhCCCcceeecCHHHHHhhCccccccceeeEEcCCCceEcHHHHHHHHH
Confidence            1 1000   111111111000                           00000             000000       2


Q ss_pred             HHhcCCCCeEEeCceEEEEEecCCe-EEEEEccCCceeEEEeecEEEecCCCChH-HHHHh
Q psy9141         105 ELEQYPDCNIYFQHKLINLDVNSGN-VTFYRTEDNSETKITDNQLIIGADGAYSG-VRKCL  163 (379)
Q Consensus       105 ~~~~~~gv~i~~~~~v~~i~~~~~~-v~v~~~~~G~~~~~i~adlVV~AdG~~S~-vr~~l  163 (379)
                      ..++..|++++++++|++++..+++ ..+.+. +|++ + ++|++||.|.|.+|. +.+..
T Consensus       161 e~a~~~g~~i~ln~eV~~i~~~~dg~~~~~~~-~g~~-~-~~ak~Vin~AGl~Ad~la~~~  218 (429)
T COG0579         161 EEAQANGVELRLNTEVTGIEKQSDGVFVLNTS-NGEE-T-LEAKFVINAAGLYADPLAQMA  218 (429)
T ss_pred             HHHHHcCCEEEecCeeeEEEEeCCceEEEEec-CCcE-E-EEeeEEEECCchhHHHHHHHh
Confidence            3334459999999999999999885 445566 7763 3 899999999999995 44444

>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional

Probab=99.18  E-value=2.8e-10  Score=116.27  Aligned_cols=39  Identities=26%  Similarity=0.297  Sum_probs=35.2

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCC
Q psy9141           4 NSKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIR   42 (379)
Q Consensus         4 m~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~   42 (379)
                      +.++||+|||||++|+++|+.|+++|++|+||||.....
T Consensus         4 ~~~~DVvIIGGGi~G~~iA~~La~rG~~V~LlEk~d~~~   42 (546)
T PRK11101          4 SQETDVIIIGGGATGAGIARDCALRGLRCILVERHDIAT   42 (546)
T ss_pred             CccccEEEECcCHHHHHHHHHHHHcCCeEEEEECCCCCC
Confidence            446999999999999999999999999999999976543

>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=99.18  E-value=1.7e-10  Score=114.62  Aligned_cols=154  Identities=16%  Similarity=0.190  Sum_probs=100.3

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCC---hHHHHh-----
Q psy9141           4 NSKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGL---EDKLLA-----   75 (379)
Q Consensus         4 m~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl---~~~l~~-----   75 (379)
                      +.++||+|||||+.|+-+|+-++.+|++|+++|+++.....++...     -|-|.+.++|++..+   .+.+.+     
T Consensus        10 ~~~~DviVIGGGitG~GiArDaA~RGl~v~LvE~~D~AsGTSsrst-----kLiHGGlRYl~~~e~~lvrEal~Er~vL~   84 (532)
T COG0578          10 MEEFDVIVIGGGITGAGIARDAAGRGLKVALVEKGDLASGTSSRST-----KLIHGGLRYLEQYEFSLVREALAEREVLL   84 (532)
T ss_pred             ccCCCEEEECCchhhHHHHHHHHhCCCeEEEEecCcccCcccCccc-----cCccchhhhhhhcchHHHHHHHHHHHHHH
Confidence            4679999999999999999999999999999999998876543333     356788888887532   222222     


Q ss_pred             ----C-CCCceeeEEEec--CCcE----------------------EEeeCC-------CCCc-----------------
Q psy9141          76 ----H-GIPMRARMIHGQ--NGKL----------------------REIPYD-------PVHN-----------------  102 (379)
Q Consensus        76 ----~-~~~~~~~~~~~~--~g~~----------------------~~~~~~-------~~~~-----------------  102 (379)
                          + ..|.........  ....                      ..+...       ....                 
T Consensus        85 ~~APH~v~p~~~~lp~~~~~~~~~~~~~gl~lyd~lag~~~~~p~~~~~~~~~~~~~~P~l~~~~l~ga~~y~D~~vdda  164 (532)
T COG0578          85 RIAPHLVEPLPFLLPHLPGLRDAWLIRAGLFLYDHLAGIRKLLPASRVLDPKEALPLEPALKKDGLKGAFRYPDGVVDDA  164 (532)
T ss_pred             HhCccccccCcCeEeccCCcccchHHHHHHHHHHHhhcccccCCcceecchhhhhhcCcccchhhccceEEEccceechH
Confidence                1 122222211111  0000                      000000       0000                 


Q ss_pred             H-----HHHhcCCCCeEEeCceEEEEEecCCe--EEEEEccCCceeEEEeecEEEecCCCChH-HHHHh
Q psy9141         103 Q-----VELEQYPDCNIYFQHKLINLDVNSGN--VTFYRTEDNSETKITDNQLIIGADGAYSG-VRKCL  163 (379)
Q Consensus       103 ~-----~~~~~~~gv~i~~~~~v~~i~~~~~~--v~v~~~~~G~~~~~i~adlVV~AdG~~S~-vr~~l  163 (379)
                      +     ...+...|.+++..++|+++..+++.  |.++...+|++.+ ++|+.||.|+|.|+. +++..
T Consensus       165 RLv~~~a~~A~~~Ga~il~~~~v~~~~re~~v~gV~~~D~~tg~~~~-ira~~VVNAaGpW~d~i~~~~  232 (532)
T COG0578         165 RLVAANARDAAEHGAEILTYTRVESLRREGGVWGVEVEDRETGETYE-IRARAVVNAAGPWVDEILEMA  232 (532)
T ss_pred             HHHHHHHHHHHhcccchhhcceeeeeeecCCEEEEEEEecCCCcEEE-EEcCEEEECCCccHHHHHHhh
Confidence            0     23455679999999999999998883  3344333577778 999999999999995 56555

>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K

Probab=99.17  E-value=6.6e-11  Score=103.76  Aligned_cols=140  Identities=16%  Similarity=0.189  Sum_probs=77.7

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCc-cc-ccccCHHHHHHHHHCCChHHHHhCCCCceee
Q psy9141           6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGK-SI-NLALSVRGREALRRIGLEDKLLAHGIPMRAR   83 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~-~i-~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~   83 (379)
                      ++||+||||||+||++|+.|++.|++|+|+|++..+... ...|. .. .+.+...+..+|+++|+.-+  +.       
T Consensus        17 ~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~GGg-~~~Gg~lf~~iVVq~~a~~iL~elgi~y~--~~-------   86 (230)
T PF01946_consen   17 EYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPGGG-MWGGGMLFNKIVVQEEADEILDELGIPYE--EY-------   86 (230)
T ss_dssp             EESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-BTT-TTS-CTT---EEEETTTHHHHHHHT---E--E--------
T ss_pred             cCCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCCcc-ccccccccchhhhhhhHHHHHHhCCceeE--Ee-------
Confidence            589999999999999999999999999999999866532 11111 00 01345567888888876211  00       


Q ss_pred             EEEecCCcEEEeeCCCCCcH-HHHhcCCCCeEEeCceEEEEEecC-CeEE-EEEc-----cCC---ceeEEEeecEEEec
Q psy9141          84 MIHGQNGKLREIPYDPVHNQ-VELEQYPDCNIYFQHKLINLDVNS-GNVT-FYRT-----EDN---SETKITDNQLIIGA  152 (379)
Q Consensus        84 ~~~~~~g~~~~~~~~~~~~~-~~~~~~~gv~i~~~~~v~~i~~~~-~~v~-v~~~-----~~G---~~~~~i~adlVV~A  152 (379)
                          .++- ...+....... ...+..+|++|+..+.|+++...+ +++. +...     ..|   +..+ ++|++||+|
T Consensus        87 ----~~g~-~v~d~~~~~s~L~s~a~~aGakifn~~~vEDvi~r~~~rV~GvViNWt~V~~~glHvDPl~-i~ak~ViDa  160 (230)
T PF01946_consen   87 ----GDGY-YVADSVEFTSTLASKAIDAGAKIFNLTSVEDVIVREDDRVAGVVINWTPVEMAGLHVDPLT-IRAKVVIDA  160 (230)
T ss_dssp             ----SSEE-EES-HHHHHHHHHHHHHTTTEEEEETEEEEEEEEECSCEEEEEEEEEHHHHTT--T-B-EE-EEESEEEE-
T ss_pred             ----CCeE-EEEcHHHHHHHHHHHHhcCCCEEEeeeeeeeeEEEcCCeEEEEEEEehHHhHhhcCCCcce-EEEeEEEeC
Confidence                0110 00000000000 122234899999999999987766 5544 2111     022   2235 999999999


Q ss_pred             CCCChHHHH
Q psy9141         153 DGAYSGVRK  161 (379)
Q Consensus       153 dG~~S~vr~  161 (379)
                      +|.-+.+-+
T Consensus       161 TGHda~v~~  169 (230)
T PF01946_consen  161 TGHDAEVVR  169 (230)
T ss_dssp             --SSSSSTS
T ss_pred             CCCchHHHH
Confidence            999875433

>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A

Probab=99.15  E-value=2.7e-11  Score=120.24  Aligned_cols=148  Identities=18%  Similarity=0.199  Sum_probs=37.1

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeEEEe
Q psy9141           8 SVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARMIHG   87 (379)
Q Consensus         8 dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~   87 (379)
                      |||||||||+|+++|+.+++.|.+|+|||+.+.........+...  ........ .-.-|++.++..............
T Consensus         1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~lGG~~t~~~~~~--~~~~~~~~-~~~~gi~~e~~~~~~~~~~~~~~~   77 (428)
T PF12831_consen    1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKGGFLGGMATSGGVSP--FDGNHDED-QVIGGIFREFLNRLRARGGYPQED   77 (428)
T ss_dssp             EEEEE--SHHHHHHHHHHHHTTS-EEEE-SSSSSTGGGGGSSS-E--ETTEEHHH-HHHHHHHHHHHHST----------
T ss_pred             CEEEECccHHHHHHHHHHHHCCCEEEEEECCccCCCcceECCcCC--hhhcchhh-ccCCCHHHHHHHHHhhhccccccc
Confidence            899999999999999999999999999999987753322112111  01111111 111133444443322111000000


Q ss_pred             cCCcEEEeeCCCCCcH---HHHhcCCCCeEEeCceEEEEEecCCeEE-EEEcc-CCceeEEEeecEEEecCCCChHHH
Q psy9141          88 QNGKLREIPYDPVHNQ---VELEQYPDCNIYFQHKLINLDVNSGNVT-FYRTE-DNSETKITDNQLIIGADGAYSGVR  160 (379)
Q Consensus        88 ~~g~~~~~~~~~~~~~---~~~~~~~gv~i~~~~~v~~i~~~~~~v~-v~~~~-~G~~~~~i~adlVV~AdG~~S~vr  160 (379)
                      ..+......+......   .......|+++++++.|+++..+++.++ |++.. +| ..+ ++|+++|+|+|-....+
T Consensus        78 ~~~~~~~~~~~~~~~~~~l~~~l~e~gv~v~~~t~v~~v~~~~~~i~~V~~~~~~g-~~~-i~A~~~IDaTG~g~l~~  153 (428)
T PF12831_consen   78 RYGWVSNVPFDPEVFKAVLDEMLAEAGVEVLLGTRVVDVIRDGGRITGVIVETKSG-RKE-IRAKVFIDATGDGDLAA  153 (428)
T ss_dssp             ------------------------------------------------------------------------------
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccc-ccccccccccccccccc
Confidence            0110000111111000   2333557999999999999998876543 33331 34 345 99999999999655444

>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A

Probab=99.14  E-value=1.4e-10  Score=103.04  Aligned_cols=131  Identities=15%  Similarity=0.125  Sum_probs=66.9

Q ss_pred             EEECCChHHHHHHHHHHhCCCc-EEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeEEEec
Q psy9141          10 VIVGGGLVGSLSACMFAKNQYE-VNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARMIHGQ   88 (379)
Q Consensus        10 vIVGaGpaGl~~A~~La~~G~~-V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~   88 (379)
                      +||||||+||++|..|.+.|.+ |+|+|+.+.+.......         +.... +.......    ....+........
T Consensus         1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~~~Gg~w~~~---------~~~~~-~~~~~~~~----~~~~~~~~~~~~~   66 (203)
T PF13738_consen    1 VIIGAGPAGLAAAAHLLERGIDPVVVLERNDRPGGVWRRY---------YSYTR-LHSPSFFS----SDFGLPDFESFSF   66 (203)
T ss_dssp             EEE--SHHHHHHHHHHHHTT---EEEEESSSSSTTHHHCH----------TTTT--BSSSCCT----GGSS--CCCHSCH
T ss_pred             CEECcCHHHHHHHHHHHhCCCCcEEEEeCCCCCCCeeEEe---------CCCCc-cccCcccc----ccccCCccccccc
Confidence            7999999999999999999999 99999997663210000         00000 00000000    0000000000000


Q ss_pred             CCc-EEEeeCCCCCcH------HHHhcCCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEEEecCCCChH
Q psy9141          89 NGK-LREIPYDPVHNQ------VELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAYSG  158 (379)
Q Consensus        89 ~g~-~~~~~~~~~~~~------~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlVV~AdG~~S~  158 (379)
                      ... ....+......+      +...+..+++++++++|++++.++++|++++. ++++   ++||.||.|+|..|.
T Consensus        67 ~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~~~w~v~~~-~~~~---~~a~~VVlAtG~~~~  139 (203)
T PF13738_consen   67 DDSPEWRWPHDFPSGEEVLDYLQEYAERFGLEIRFNTRVESVRRDGDGWTVTTR-DGRT---IRADRVVLATGHYSH  139 (203)
T ss_dssp             HHHHHHHHSBSSEBHHHHHHHHHHHHHHTTGGEETS--EEEEEEETTTEEEEET-TS-E---EEEEEEEE---SSCS
T ss_pred             ccCCCCCCCcccCCHHHHHHHHHHHHhhcCcccccCCEEEEEEEeccEEEEEEE-ecce---eeeeeEEEeeeccCC
Confidence            000 000000001011      33444457789999999999999999999998 8855   999999999998765

...

>PRK11728 hydroxyglutarate oxidase; Provisional

Probab=99.13  E-value=4.9e-10  Score=110.12  Aligned_cols=51  Identities=22%  Similarity=0.262  Sum_probs=41.6

Q ss_pred             cCCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEEEecCCCChH-HHHHh
Q psy9141         108 QYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAYSG-VRKCL  163 (379)
Q Consensus       108 ~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlVV~AdG~~S~-vr~~l  163 (379)
                      +..|++++++++|++++.+++++.+.+. +| +   ++||.||.|+|.+|. +.+.+
T Consensus       160 ~~~Gv~i~~~~~V~~i~~~~~~~~V~~~-~g-~---i~ad~vV~A~G~~s~~l~~~~  211 (393)
T PRK11728        160 QARGGEIRLGAEVTALDEHANGVVVRTT-QG-E---YEARTLINCAGLMSDRLAKMA  211 (393)
T ss_pred             HhCCCEEEcCCEEEEEEecCCeEEEEEC-CC-E---EEeCEEEECCCcchHHHHHHh
Confidence            3468999999999999988888877776 66 4   899999999999984 44433

>PRK12409 D-amino acid dehydrogenase small subunit; Provisional

Probab=99.12  E-value=7.9e-10  Score=109.21  Aligned_cols=51  Identities=8%  Similarity=0.118  Sum_probs=39.6

Q ss_pred             HhcCCCCeEEeCceEEEEEecCCeEEEEEccCCc---eeEEEeecEEEecCCCChH
Q psy9141         106 LEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNS---ETKITDNQLIIGADGAYSG  158 (379)
Q Consensus       106 ~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~---~~~~i~adlVV~AdG~~S~  158 (379)
                      ..+..|++++++++|++++.+++++++.+. ++.   ..+ ++||.||.|+|.+|.
T Consensus       206 ~a~~~G~~i~~~~~V~~i~~~~~~~~v~~~-~~~~~~~~~-i~a~~vV~a~G~~s~  259 (410)
T PRK12409        206 ACARLGVQFRYGQEVTSIKTDGGGVVLTVQ-PSAEHPSRT-LEFDGVVVCAGVGSR  259 (410)
T ss_pred             HHHhCCCEEEcCCEEEEEEEeCCEEEEEEE-cCCCCccce-EecCEEEECCCcChH
Confidence            344569999999999999988888776654 321   113 899999999999984

>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

Probab=99.10  E-value=1e-09  Score=114.97  Aligned_cols=44  Identities=14%  Similarity=0.225  Sum_probs=39.3

Q ss_pred             CCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEEEecCCCChH
Q psy9141         111 DCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAYSG  158 (379)
Q Consensus       111 gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlVV~AdG~~S~  158 (379)
                      |++++++++|++++.+++++++.+. +|..   ++||.||.|+|.+|.
T Consensus       421 Gv~i~~~~~V~~i~~~~~~~~v~t~-~g~~---~~ad~VV~A~G~~s~  464 (662)
T PRK01747        421 QLTIHFGHEVARLEREDDGWQLDFA-GGTL---ASAPVVVLANGHDAA  464 (662)
T ss_pred             CcEEEeCCEeeEEEEeCCEEEEEEC-CCcE---EECCEEEECCCCCcc
Confidence            8999999999999988888888877 7776   789999999999984

>PRK05257 malate:quinone oxidoreductase; Validated

Probab=99.09  E-value=1e-09  Score=110.55  Aligned_cols=38  Identities=21%  Similarity=0.603  Sum_probs=33.9

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHhC--CCcEEEEccCCCC
Q psy9141           4 NSKKSVVIVGGGLVGSLSACMFAKN--QYEVNLYEAREDI   41 (379)
Q Consensus         4 m~~~dVvIVGaGpaGl~~A~~La~~--G~~V~viE~~~~~   41 (379)
                      +.++||+|||||++|+++|+.|++.  |++|+|+||.+..
T Consensus         3 ~~~~DVvIIGgGIiG~slA~~L~~~~~g~~V~VlEk~~~~   42 (494)
T PRK05257          3 ESKTDVVLIGGGIMSATLGTLLKELEPEWSITMFERLDGV   42 (494)
T ss_pred             CccceEEEECcHHHHHHHHHHHHHhCCCCeEEEEEcCCch
Confidence            4568999999999999999999985  8899999998754

>PRK13339 malate:quinone oxidoreductase; Reviewed

Probab=99.06  E-value=2e-09  Score=107.97  Aligned_cols=55  Identities=9%  Similarity=0.182  Sum_probs=40.6

Q ss_pred             cCCCCeEEeCceEEEEEec-CCeEEEEE--ccCCceeEEEeecEEEecCCCChH-HHHHh
Q psy9141         108 QYPDCNIYFQHKLINLDVN-SGNVTFYR--TEDNSETKITDNQLIIGADGAYSG-VRKCL  163 (379)
Q Consensus       108 ~~~gv~i~~~~~v~~i~~~-~~~v~v~~--~~~G~~~~~i~adlVV~AdG~~S~-vr~~l  163 (379)
                      +..|++++++++|++++.+ +++|++..  ..+|+..+ ++||+||.|.|.+|. +.+.+
T Consensus       196 ~~~Gv~i~~~~~V~~I~~~~d~~w~v~v~~t~~g~~~~-i~Ad~VV~AAGawS~~La~~~  254 (497)
T PRK13339        196 SHPNAQVKYNHEVVDLERLSDGGWEVTVKDRNTGEKRE-QVADYVFIGAGGGAIPLLQKS  254 (497)
T ss_pred             hCCCcEEEeCCEEEEEEECCCCCEEEEEEecCCCceEE-EEcCEEEECCCcchHHHHHHc
Confidence            4468999999999999887 66777753  21453223 899999999999994 44444

>PRK06481 fumarate reductase flavoprotein subunit; Validated

Probab=99.05  E-value=5.3e-09  Score=106.05  Aligned_cols=154  Identities=14%  Similarity=0.172  Sum_probs=85.4

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccC---------HHHHHHHHHC---C-----
Q psy9141           6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALS---------VRGREALRRI---G-----   68 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~---------~~~~~~l~~l---G-----   68 (379)
                      ++||||||+|.+|+++|+.+++.|.+|+||||.+.....+...+.++...-+         ....++++.+   +     
T Consensus        61 ~~DVvVVG~G~AGl~AAi~Aa~~Ga~VivlEK~~~~GG~s~~s~Gg~~~~~~~~~~~~g~~d~~~~~~~~~~~~~~~~~d  140 (506)
T PRK06481         61 KYDIVIVGAGGAGMSAAIEAKDAGMNPVILEKMPVAGGNTMKASSGMNASETKFQKAQGIADSNDKFYEETLKGGGGTND  140 (506)
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCcccccCCccccCChHHHHhcCCCCCHHHHHHHHHHhcCCCCC
Confidence            6899999999999999999999999999999998654322222222210000         0001112111   0     


Q ss_pred             -------------ChHHHHhCCCCceeeEEEecCCcE---EEeeCCC-CCcH------HHHhcCCCCeEEeCceEEEEEe
Q psy9141          69 -------------LEDKLLAHGIPMRARMIHGQNGKL---REIPYDP-VHNQ------VELEQYPDCNIYFQHKLINLDV  125 (379)
Q Consensus        69 -------------l~~~l~~~~~~~~~~~~~~~~g~~---~~~~~~~-~~~~------~~~~~~~gv~i~~~~~v~~i~~  125 (379)
                                   ..+.+.+.+.++....  ...+..   ...+... ..+.      ....+..+++++++++|+++..
T Consensus       141 ~~l~~~~~~~s~~~i~wl~~~Gv~~~~~~--~~~g~~~~r~~~p~~g~~~g~~l~~~L~~~~~~~gv~i~~~t~v~~l~~  218 (506)
T PRK06481        141 KALLRYFVDNSASAIDWLDSMGIKLDNLT--ITGGMSEKRTHRPHDGSAVGGYLVDGLLKNVQERKIPLFVNADVTKITE  218 (506)
T ss_pred             HHHHHHHHhccHHHHHHHHHcCceEeecc--cCCCCCCCceeccCCCCCChHHHHHHHHHHHHHcCCeEEeCCeeEEEEe
Confidence                         0111222222221110  001110   0111110 1111      2223346899999999999987


Q ss_pred             cCCeE---EEEEccCCceeEEEeecEEEecCCCChHHHHHh
Q psy9141         126 NSGNV---TFYRTEDNSETKITDNQLIIGADGAYSGVRKCL  163 (379)
Q Consensus       126 ~~~~v---~v~~~~~G~~~~~i~adlVV~AdG~~S~vr~~l  163 (379)
                      +++.+   .+... +|+..+ +.|+.||.|+|.++.-.+.+
T Consensus       219 ~~g~V~Gv~~~~~-~g~~~~-i~a~~VVlAtGG~~~n~~m~  257 (506)
T PRK06481        219 KDGKVTGVKVKIN-GKETKT-ISSKAVVVTTGGFGANKDMI  257 (506)
T ss_pred             cCCEEEEEEEEeC-CCeEEE-EecCeEEEeCCCcccCHHHH
Confidence            66643   34444 555456 99999999999988655444

>PRK09231 fumarate reductase flavoprotein subunit; Validated

Probab=99.04  E-value=3.9e-09  Score=108.67  Aligned_cols=153  Identities=15%  Similarity=0.150  Sum_probs=86.2

Q ss_pred             CCCcEEEECCChHHHHHHHHHHhC--CCcEEEEccCCCCCCCCCCCCccccccc---------------------CHHHH
Q psy9141           5 SKKSVVIVGGGLVGSLSACMFAKN--QYEVNLYEAREDIRNSGLSEGKSINLAL---------------------SVRGR   61 (379)
Q Consensus         5 ~~~dVvIVGaGpaGl~~A~~La~~--G~~V~viE~~~~~~~~~~~~g~~i~~al---------------------~~~~~   61 (379)
                      .++||+|||||.|||++|+.+++.  |.+|+|+||.......+...+.++...+                     .+...
T Consensus         3 ~~~DVlVVG~G~AGl~AAi~Aa~~g~g~~V~lleK~~~~~g~s~~a~Gg~~~~~~~~ds~e~~~~d~~~~g~~~~d~~~v   82 (582)
T PRK09231          3 FQADLAIIGAGGAGLRAAIAAAEANPNLKIALISKVYPMRSHTVAAEGGSAAVAQDHDSFDYHFHDTVAGGDWLCEQDVV   82 (582)
T ss_pred             eeeeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCCChhhccchhhhhcCCCCCHHHHHHHHHHhcccCCCHHHH
Confidence            358999999999999999999987  5799999998755433222222221111                     11111


Q ss_pred             HHHHHC--CChHHHHhCCCCcee-----eEEEecCCcE--EEeeCCCCCcH-------HHHhcCCCCeEEeCceEEEEEe
Q psy9141          62 EALRRI--GLEDKLLAHGIPMRA-----RMIHGQNGKL--REIPYDPVHNQ-------VELEQYPDCNIYFQHKLINLDV  125 (379)
Q Consensus        62 ~~l~~l--Gl~~~l~~~~~~~~~-----~~~~~~~g~~--~~~~~~~~~~~-------~~~~~~~gv~i~~~~~v~~i~~  125 (379)
                      +.|-+-  ...+.+.+.+.++..     +......+..  .........+.       ....+.++++++.++.++++..
T Consensus        83 ~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~~G~~i~~~L~~~~~~~~~i~i~~~~~v~~Li~  162 (582)
T PRK09231         83 EYFVHHCPTEMTQLEQWGCPWSRKPDGSVNVRRFGGMKIERTWFAADKTGFHMLHTLFQTSLKYPQIQRFDEHFVLDILV  162 (582)
T ss_pred             HHHHHHHHHHHHHHHHcCCCcccCCCCceeeeccccccCCeeEecCCCcHHHHHHHHHHHhhcCCCcEEEeCeEEEEEEE
Confidence            111100  011223334444421     0001111111  01111111121       2233446899999999999987


Q ss_pred             cCCeEE----EEEccCCceeEEEeecEEEecCCCChHH
Q psy9141         126 NSGNVT----FYRTEDNSETKITDNQLIIGADGAYSGV  159 (379)
Q Consensus       126 ~~~~v~----v~~~~~G~~~~~i~adlVV~AdG~~S~v  159 (379)
                      +++.+.    +... +|+... +.|+.||.|+|.+|.+
T Consensus       163 ~~g~v~Gv~~~~~~-~g~~~~-i~AkaVIlATGG~~~l  198 (582)
T PRK09231        163 DDGHVRGLVAMNMM-EGTLVQ-IRANAVVMATGGAGRV  198 (582)
T ss_pred             eCCEEEEEEEEEcC-CCcEEE-EECCEEEECCCCCcCC
Confidence            766544    2334 676555 9999999999999965

>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.04  E-value=4.3e-09  Score=108.42  Aligned_cols=154  Identities=18%  Similarity=0.132  Sum_probs=85.6

Q ss_pred             CCCcEEEECCChHHHHHHHHHHhCC---CcEEEEccCCCCCCCCCCCCcccccccCH---HHH-----HHHHHC-C----
Q psy9141           5 SKKSVVIVGGGLVGSLSACMFAKNQ---YEVNLYEAREDIRNSGLSEGKSINLALSV---RGR-----EALRRI-G----   68 (379)
Q Consensus         5 ~~~dVvIVGaGpaGl~~A~~La~~G---~~V~viE~~~~~~~~~~~~g~~i~~al~~---~~~-----~~l~~l-G----   68 (379)
                      .++||+|||+|+|||++|+.+++.|   .+|+|+||.+.....+...+.++...+.+   .+.     .+++.- +    
T Consensus         4 ~~~DVlVVG~G~AGl~AA~~Aa~~G~~~~~V~lleK~~~~~~~s~~a~Gg~~a~~~~~~~ds~e~~~~d~~~~g~~~~d~   83 (577)
T PRK06069          4 LKYDVVIVGSGLAGLRAAVAAAERSGGKLSVAVVSKTQPMRSHSVSAEGGTAAVLYPEKGDSFDLHAYDTVKGSDFLADQ   83 (577)
T ss_pred             eecCEEEECccHHHHHHHHHHHHhCCCCCcEEEEEcccCCCCCceecccccceeeccccCCCHHHHHHHHHHhhcccCCH
Confidence            4689999999999999999999998   89999999986544322222222211211   011     111100 0    


Q ss_pred             ------------ChHHHHhCCCCcee-----eEEEecCCcE-EEeeCCC-CCcH-------HHHhcCCCCeEEeCceEEE
Q psy9141          69 ------------LEDKLLAHGIPMRA-----RMIHGQNGKL-REIPYDP-VHNQ-------VELEQYPDCNIYFQHKLIN  122 (379)
Q Consensus        69 ------------l~~~l~~~~~~~~~-----~~~~~~~g~~-~~~~~~~-~~~~-------~~~~~~~gv~i~~~~~v~~  122 (379)
                                  ..+.+.+.+.++..     .......+.. .+..+.. ..+.       ..+.+..+++++.++.+++
T Consensus        84 ~lv~~~~~~s~~~i~~L~~~Gv~f~~~~~G~~~~~~~~g~~~~r~~~~~d~tG~~i~~~L~~~~~~~~gv~i~~~~~v~~  163 (577)
T PRK06069         84 DAVEVFVREAPEEIRFLDHWGVPWSRRPDGRISQRPFGGMSFPRTTFAADKTGFYIMHTLYSRALRFDNIHFYDEHFVTS  163 (577)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCeeEecCCCcEeeeecCCcccceeeEcCCCchHHHHHHHHHHHHhcCCCEEEECCEEEE
Confidence                        11222233333321     0000011111 0111111 0111       2233446899999999999


Q ss_pred             EEecCCeEE---E-EEccCCceeEEEeecEEEecCCCChHHH
Q psy9141         123 LDVNSGNVT---F-YRTEDNSETKITDNQLIIGADGAYSGVR  160 (379)
Q Consensus       123 i~~~~~~v~---v-~~~~~G~~~~~i~adlVV~AdG~~S~vr  160 (379)
                      +..+++.+.   + ... +|+... +.|+.||.|+|..+.+.
T Consensus       164 Li~~~g~v~Gv~~~~~~-~g~~~~-i~Ak~VIlATGG~~~~~  203 (577)
T PRK06069        164 LIVENGVFKGVTAIDLK-RGEFKV-FQAKAGIIATGGAGRLY  203 (577)
T ss_pred             EEEECCEEEEEEEEEcC-CCeEEE-EECCcEEEcCchhcccC
Confidence            987666543   2 223 666445 89999999999997643

>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase

Probab=99.03  E-value=2.5e-09  Score=107.48  Aligned_cols=35  Identities=17%  Similarity=0.483  Sum_probs=32.1

Q ss_pred             CcEEEECCChHHHHHHHHHHhC--CCcEEEEccCCCC
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKN--QYEVNLYEAREDI   41 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~--G~~V~viE~~~~~   41 (379)
                      +||+|||||++|+++|+.|++.  |.+|+|+||.+.+
T Consensus         1 ~DVvIIGgGI~G~a~A~~L~~~~~g~~V~VlEk~~~~   37 (483)
T TIGR01320         1 TDVVLIGAGIMSATLGVLLRELEPNWSITLIERLDAV   37 (483)
T ss_pred             CcEEEECchHHHHHHHHHHHHhCCCCeEEEEEcCCcc
Confidence            5999999999999999999997  9999999997643

This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.

>PTZ00383 malate:quinone oxidoreductase; Provisional

Probab=99.03  E-value=2.6e-09  Score=107.36  Aligned_cols=47  Identities=11%  Similarity=0.212  Sum_probs=38.1

Q ss_pred             CeEEeCceEEEEEec-CCeEEEEEccCCceeEEEeecEEEecCCCChH-HHHHh
Q psy9141         112 CNIYFQHKLINLDVN-SGNVTFYRTEDNSETKITDNQLIIGADGAYSG-VRKCL  163 (379)
Q Consensus       112 v~i~~~~~v~~i~~~-~~~v~v~~~~~G~~~~~i~adlVV~AdG~~S~-vr~~l  163 (379)
                      ++|+++++|++++.+ ++.+.|++. +| +   ++||.||.|.|.+|. +.+.+
T Consensus       232 v~i~~~t~V~~I~~~~~~~~~V~T~-~G-~---i~A~~VVvaAG~~S~~La~~~  280 (497)
T PTZ00383        232 ISINLNTEVLNIERSNDSLYKIHTN-RG-E---IRARFVVVSACGYSLLFAQKM  280 (497)
T ss_pred             EEEEeCCEEEEEEecCCCeEEEEEC-CC-E---EEeCEEEECcChhHHHHHHHh
Confidence            789999999999987 446778776 67 3   899999999999995 44443

>TIGR00551 nadB L-aspartate oxidase

Probab=99.03  E-value=6.2e-09  Score=105.15  Aligned_cols=154  Identities=14%  Similarity=0.178  Sum_probs=83.8

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccC---------------------HHHHHHH
Q psy9141           6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALS---------------------VRGREAL   64 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~---------------------~~~~~~l   64 (379)
                      ++||+|||+|+|||++|+.+++.|. |+|+||.+.....+...+.++...+.                     +...+.+
T Consensus         2 ~~DVlVVG~G~AGl~AA~~aa~~G~-V~lleK~~~~~g~s~~a~Ggi~~~~~~~ds~e~~~~d~~~~~~~~~d~~~v~~~   80 (488)
T TIGR00551         2 SCDVVVIGSGAAGLSAALALADQGR-VIVLSKAPVTEGNSFYAQGGIAAVLAETDSIDSHVEDTLAAGAGICDREAVEFV   80 (488)
T ss_pred             CccEEEECccHHHHHHHHHHHhCCC-EEEEEccCCCCCcchhcCcCeeeeecCCCCHHHHHHHHHHhcCCcCCHHHHHHH
Confidence            4799999999999999999999997 99999997544322222222211111                     1111111


Q ss_pred             HHC--CChHHHHhCCCCceee-----EEEecCCcE--EEeeCCCCCcH-------HHHhcCCCCeEEeCceEEEEEecCC
Q psy9141          65 RRI--GLEDKLLAHGIPMRAR-----MIHGQNGKL--REIPYDPVHNQ-------VELEQYPDCNIYFQHKLINLDVNSG  128 (379)
Q Consensus        65 ~~l--Gl~~~l~~~~~~~~~~-----~~~~~~g~~--~~~~~~~~~~~-------~~~~~~~gv~i~~~~~v~~i~~~~~  128 (379)
                      -+-  ...+.+...+.++...     ......+..  ..+......+.       ..+.+.+++++++++.++++..+++
T Consensus        81 ~~~~~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~~G~~l~~~L~~~~~~~~gi~i~~~~~v~~l~~~~g  160 (488)
T TIGR00551        81 VSDARSAVQWLVDQGVLFDRHEQGSYALTREGGHSYRRILHAADATGREVITTLVKKALNHPNIRIIEGENALDLLIETG  160 (488)
T ss_pred             HHhHHHHHHHHHHcCCcceeCCCCCccccCCCCcCCCeEEEeCCCCHHHHHHHHHHHHHhcCCcEEEECeEeeeeeccCC
Confidence            000  0112222233333210     000011111  11111111111       2333347999999999999987666


Q ss_pred             eEE-EEEccCCceeEEEeecEEEecCCCChHHHH
Q psy9141         129 NVT-FYRTEDNSETKITDNQLIIGADGAYSGVRK  161 (379)
Q Consensus       129 ~v~-v~~~~~G~~~~~i~adlVV~AdG~~S~vr~  161 (379)
                      .+. +.....++..+ +.|+.||.|+|.+|.+..
T Consensus       161 ~v~Gv~~~~~~~~~~-i~A~~VVlAtGG~~~~~~  193 (488)
T TIGR00551       161 RVVGVWVWNRETVET-CHADAVVLATGGAGKLYQ  193 (488)
T ss_pred             EEEEEEEEECCcEEE-EEcCEEEECCCcccCCCC
Confidence            554 43331243334 899999999999997543

L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.

>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.01  E-value=5.9e-09  Score=107.35  Aligned_cols=154  Identities=19%  Similarity=0.224  Sum_probs=83.9

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHhC--CCcEEEEccCCCCCCCCCCCCcccccccC----HHH-----------------
Q psy9141           4 NSKKSVVIVGGGLVGSLSACMFAKN--QYEVNLYEAREDIRNSGLSEGKSINLALS----VRG-----------------   60 (379)
Q Consensus         4 m~~~dVvIVGaGpaGl~~A~~La~~--G~~V~viE~~~~~~~~~~~~g~~i~~al~----~~~-----------------   60 (379)
                      |.++||+|||||+|||++|+.+++.  |.+|+|+||.+.....+...+.++...++    ..+                 
T Consensus         1 ~~~~DVlVIG~G~AGl~AAi~aa~~g~g~~V~vleK~~~~gg~s~~a~GGi~a~~~~~~~~ds~e~~~~d~~~~~~~l~d   80 (575)
T PRK05945          1 MLEHDVVIVGGGLAGCRAALEIKRLDPSLDVAVVAKTHPIRSHSVAAQGGIAASLKNVDPEDSWEAHAFDTVKGSDYLAD   80 (575)
T ss_pred             CCcccEEEECccHHHHHHHHHHHHhcCCCcEEEEeccCCCchhhHHhccchhhhccCCCCCCCHHHHHHHHHHHhCCCCC
Confidence            4568999999999999999999987  48999999987544222111112211110    011                 


Q ss_pred             ---HHHHHHCC--ChHHHHhCCCCceee-----EEEecCCcE-EEeeCCC-CCcH------HHHhcCCCCeEEeCceEEE
Q psy9141          61 ---REALRRIG--LEDKLLAHGIPMRAR-----MIHGQNGKL-REIPYDP-VHNQ------VELEQYPDCNIYFQHKLIN  122 (379)
Q Consensus        61 ---~~~l~~lG--l~~~l~~~~~~~~~~-----~~~~~~g~~-~~~~~~~-~~~~------~~~~~~~gv~i~~~~~v~~  122 (379)
                         .+.|.+-.  ..+.+.+.+.++...     ......+.. .+..+.. ..+.      .......+++++.++.+++
T Consensus        81 ~~~v~~l~~~a~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~tG~~i~~~L~~~~~~~gi~i~~~t~v~~  160 (575)
T PRK05945         81 QDAVAILTQEAPDVIIDLEHLGVLFSRLPDGRIAQRAFGGHSHNRTCYAADKTGHAILHELVNNLRRYGVTIYDEWYVMR  160 (575)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCceEECCCCcEeeccccccccCeeEecCCCChHHHHHHHHHHHhhCCCEEEeCcEEEE
Confidence               11111000  112222334433210     000001111 1111111 1111      1222346899999999999


Q ss_pred             EEecCCeEE----EEEccCCceeEEEeecEEEecCCCChHH
Q psy9141         123 LDVNSGNVT----FYRTEDNSETKITDNQLIIGADGAYSGV  159 (379)
Q Consensus       123 i~~~~~~v~----v~~~~~G~~~~~i~adlVV~AdG~~S~v  159 (379)
                      +..+++.+.    +... +|+..+ +.|+.||.|+|.++.+
T Consensus       161 L~~~~g~v~Gv~~~~~~-~g~~~~-i~AkaVVlATGG~~~~  199 (575)
T PRK05945        161 LILEDNQAKGVVMYHIA-DGRLEV-VRAKAVMFATGGYGRV  199 (575)
T ss_pred             EEEECCEEEEEEEEEcC-CCeEEE-EECCEEEECCCCCcCC
Confidence            887666433    2334 666555 8999999999999854

>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional

Probab=99.01  E-value=4.3e-09  Score=105.65  Aligned_cols=49  Identities=8%  Similarity=0.119  Sum_probs=42.0

Q ss_pred             cCCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEEEecCCCChHHH
Q psy9141         108 QYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAYSGVR  160 (379)
Q Consensus       108 ~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlVV~AdG~~S~vr  160 (379)
                      +..+++++.+++|++++.+++++.+++. +|++   +++|.||.|.|+.+.+.
T Consensus       227 ~~~gI~v~~~~~v~~i~~~~~~~~v~~~-~g~~---i~~D~vi~a~G~~p~~~  275 (461)
T PRK05249        227 RDSGVTIRHNEEVEKVEGGDDGVIVHLK-SGKK---IKADCLLYANGRTGNTD  275 (461)
T ss_pred             HHcCCEEEECCEEEEEEEeCCeEEEEEC-CCCE---EEeCEEEEeecCCcccc
Confidence            3468999999999999887778888777 7876   99999999999998765

>PLN02172 flavin-containing monooxygenase FMO GS-OX

Probab=99.01  E-value=2e-09  Score=107.62  Aligned_cols=150  Identities=11%  Similarity=0.155  Sum_probs=81.6

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccc--cccCHHHHHHHHHCCChHHHHhCCCCce
Q psy9141           4 NSKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSIN--LALSVRGREALRRIGLEDKLLAHGIPMR   81 (379)
Q Consensus         4 m~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~--~al~~~~~~~l~~lGl~~~l~~~~~~~~   81 (379)
                      ++..+|+||||||+||++|..|.+.|++|+|+|+++..+...........  +.+.+.. .... -.+++.+.. ..+-.
T Consensus         8 ~~~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~vGG~W~~~~~~~~d~~~~~~~~-~~~~-s~~Y~~L~t-n~p~~   84 (461)
T PLN02172          8 INSQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVGGLWVYTPKSESDPLSLDPTR-SIVH-SSVYESLRT-NLPRE   84 (461)
T ss_pred             CCCCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCCcceeecCCCcCCCccccCCCC-cccc-hhhhhhhhc-cCCHh
Confidence            34689999999999999999999999999999999876533222111000  0000000 0000 001111110 00100


Q ss_pred             eeEEEecCCcE-----EEeeCCCCCcH------HHHhcCCCCe--EEeCceEEEEEecCCeEEEEEccCC--ceeEEEee
Q psy9141          82 ARMIHGQNGKL-----REIPYDPVHNQ------VELEQYPDCN--IYFQHKLINLDVNSGNVTFYRTEDN--SETKITDN  146 (379)
Q Consensus        82 ~~~~~~~~g~~-----~~~~~~~~~~~------~~~~~~~gv~--i~~~~~v~~i~~~~~~v~v~~~~~G--~~~~~i~a  146 (379)
                      -+.+.+.....     ....-..+.++      +..++.-++.  |+++++|++++..+++|+|++. ++  ...+ ..+
T Consensus        85 ~m~f~dfp~~~~~~~~~~~~~~fp~~~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~~~w~V~~~-~~~~~~~~-~~~  162 (461)
T PLN02172         85 CMGYRDFPFVPRFDDESRDSRRYPSHREVLAYLQDFAREFKIEEMVRFETEVVRVEPVDGKWRVQSK-NSGGFSKD-EIF  162 (461)
T ss_pred             hccCCCCCCCcccccccCcCCCCCCHHHHHHHHHHHHHHcCCcceEEecCEEEEEeecCCeEEEEEE-cCCCceEE-EEc
Confidence            01111100000     00000011111      2333445666  8999999999988888998876 33  3223 679


Q ss_pred             cEEEecCCCChH
Q psy9141         147 QLIIGADGAYSG  158 (379)
Q Consensus       147 dlVV~AdG~~S~  158 (379)
                      |.||.|+|.++.
T Consensus       163 d~VIvAtG~~~~  174 (461)
T PLN02172        163 DAVVVCNGHYTE  174 (461)
T ss_pred             CEEEEeccCCCC
Confidence            999999998764

>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup

Probab=99.00  E-value=8.2e-09  Score=106.23  Aligned_cols=151  Identities=18%  Similarity=0.156  Sum_probs=81.6

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccC---H-HHHH-----HHHH-CC---------
Q psy9141           8 SVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALS---V-RGRE-----ALRR-IG---------   68 (379)
Q Consensus         8 dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~---~-~~~~-----~l~~-lG---------   68 (379)
                      ||+|||||++|+++|+.+++.|.+|+|+||.+.....+...+.++...+.   + .+.+     +++. -+         
T Consensus         1 DVlVVG~G~AGl~AA~~aae~G~~V~lleK~~~~~g~s~~a~Gg~~~~~~~~~~~d~~e~~~~d~~~~~~~~~d~~~v~~   80 (566)
T TIGR01812         1 DVVIVGAGLAGLRAAVEAAKAGLNTAVISKVYPTRSHTVAAQGGMAAALGNVDPDDSWEWHAYDTVKGSDYLADQDAVEY   80 (566)
T ss_pred             CEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCCCcchhhccCeEeecCCCCCCccHHHHHHHHHHHhCCCCCHHHHHH
Confidence            89999999999999999999999999999987543221111111111111   0 1111     1000 00         


Q ss_pred             -------ChHHHHhCCCCcee-----eEEEecCCcE-EEeeCCCC-CcH------HHHhcCCCCeEEeCceEEEEEecCC
Q psy9141          69 -------LEDKLLAHGIPMRA-----RMIHGQNGKL-REIPYDPV-HNQ------VELEQYPDCNIYFQHKLINLDVNSG  128 (379)
Q Consensus        69 -------l~~~l~~~~~~~~~-----~~~~~~~g~~-~~~~~~~~-~~~------~~~~~~~gv~i~~~~~v~~i~~~~~  128 (379)
                             ..+.+.+.+.++..     .......+.. .+..+... .+.      .......++++++++.++++..+++
T Consensus        81 ~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~~G~~i~~~L~~~~~~~gv~i~~~~~v~~L~~~~g  160 (566)
T TIGR01812        81 MCQEAPKAILELEHWGVPFSRTPDGRIAQRPFGGHSKDRTCYAADKTGHALLHTLYEQCLKLGVSFFNEYFALDLIHDDG  160 (566)
T ss_pred             HHHHHHHHHHHHHHcCCcceecCCCcEeeccccccccCeeEECCCCCHHHHHHHHHHHHHHcCCEEEeccEEEEEEEeCC
Confidence                   11222223333321     0000001110 01111111 111      1112234999999999999987766


Q ss_pred             eEE-EE---EccCCceeEEEeecEEEecCCCChHHH
Q psy9141         129 NVT-FY---RTEDNSETKITDNQLIIGADGAYSGVR  160 (379)
Q Consensus       129 ~v~-v~---~~~~G~~~~~i~adlVV~AdG~~S~vr  160 (379)
                      .+. +.   .. +|+..+ +.|+.||.|+|.+|.+.
T Consensus       161 ~v~Gv~~~~~~-~g~~~~-i~Ak~VVlAtGG~~~~~  194 (566)
T TIGR01812       161 RVRGVVAYDLK-TGEIVF-FRAKAVVLATGGYGRIY  194 (566)
T ss_pred             EEEEEEEEECC-CCcEEE-EECCeEEECCCcccCCC
Confidence            554 22   23 666545 89999999999998654

This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.

>TIGR01813 flavo_cyto_c flavocytochrome c

Probab=99.00  E-value=9.6e-09  Score=102.43  Aligned_cols=36  Identities=33%  Similarity=0.345  Sum_probs=33.4

Q ss_pred             cEEEECCChHHHHHHHHHHhCC-CcEEEEccCCCCCC
Q psy9141           8 SVVIVGGGLVGSLSACMFAKNQ-YEVNLYEAREDIRN   43 (379)
Q Consensus         8 dVvIVGaGpaGl~~A~~La~~G-~~V~viE~~~~~~~   43 (379)
                      ||||||||++|+++|+.++++| .+|+|+||.+....
T Consensus         1 DVvVVG~G~AGl~AA~~aa~~G~~~V~vlEk~~~~gg   37 (439)
T TIGR01813         1 DVVVVGSGFAGLSAALSAKKAGAANVVLLEKMPVIGG   37 (439)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCccEEEEecCCCCCC
Confidence            8999999999999999999999 99999999986543

This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.

>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit

Probab=98.99  E-value=1.2e-08  Score=105.03  Aligned_cols=152  Identities=15%  Similarity=0.131  Sum_probs=86.0

Q ss_pred             CCcEEEECCChHHHHHHHHHHhC--CCcEEEEccCCCCCCCCCCCCccccccc---------------------CHHHHH
Q psy9141           6 KKSVVIVGGGLVGSLSACMFAKN--QYEVNLYEAREDIRNSGLSEGKSINLAL---------------------SVRGRE   62 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La~~--G~~V~viE~~~~~~~~~~~~g~~i~~al---------------------~~~~~~   62 (379)
                      ++||+|||||+|||++|+.+++.  |.+|+|+||...........+.++....                     .+...+
T Consensus         3 ~~DVlVIG~G~AGl~AAl~aa~~g~g~~V~lveK~~~~~~~s~~a~Gg~~~~~~~~ds~e~~~~dt~~~g~~~~d~~lv~   82 (580)
T TIGR01176         3 QHDIAVIGAGGAGLRAAIAAAEANPHLDVALISKVYPMRSHTVAAEGGSAAVTGDDDSLDEHFHDTVSGGDWLCEQDVVE   82 (580)
T ss_pred             ceeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCCCchhcCCchhhhcCCCCCHHHHHHHHHHhcCCcCcHHHHH
Confidence            58999999999999999999987  6899999999765443222222221011                     011111


Q ss_pred             HHHHCC--ChHHHHhCCCCceee-----EEEecCCcE-EEeeC-CCCCcH-------HHHhcCCCCeEEeCceEEEEEec
Q psy9141          63 ALRRIG--LEDKLLAHGIPMRAR-----MIHGQNGKL-REIPY-DPVHNQ-------VELEQYPDCNIYFQHKLINLDVN  126 (379)
Q Consensus        63 ~l~~lG--l~~~l~~~~~~~~~~-----~~~~~~g~~-~~~~~-~~~~~~-------~~~~~~~gv~i~~~~~v~~i~~~  126 (379)
                      .|-+-.  ..+.+.+.+.++...     ......+.. .+..+ ....+.       +.+.+.++++++.++.++++..+
T Consensus        83 ~l~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~R~~~~~~~~G~~i~~~L~~~~~~~~~i~i~~~~~v~~Li~~  162 (580)
T TIGR01176        83 YFVAEAPKEMVQLEHWGCPWSRKPDGRVNVRRFGGMKKERTWFAADKTGFHMLHTLFQTSLTYPQIMRYDEWFVTDLLVD  162 (580)
T ss_pred             HHHHHhHHHHHHHHHcCCccEecCCCceeeeccCCccCCeeeecCCCCHHHHHHHHHHHHHhcCCCEEEeCeEEEEEEee
Confidence            111110  112333334444210     011111111 01111 111122       23334468999999999999887


Q ss_pred             CCeEE----EEEccCCceeEEEeecEEEecCCCChHH
Q psy9141         127 SGNVT----FYRTEDNSETKITDNQLIIGADGAYSGV  159 (379)
Q Consensus       127 ~~~v~----v~~~~~G~~~~~i~adlVV~AdG~~S~v  159 (379)
                      ++.+.    +... +|+... +.|+.||.|+|.+|.+
T Consensus       163 ~g~v~Gv~~~~~~-~g~~~~-i~AkaVILATGG~~~~  197 (580)
T TIGR01176       163 DGRVCGLVAIEMA-EGRLVT-ILADAVVLATGGAGRV  197 (580)
T ss_pred             CCEEEEEEEEEcC-CCcEEE-EecCEEEEcCCCCccc
Confidence            66554    2334 676556 8999999999999964

The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.

>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase

Probab=98.99  E-value=1.9e-09  Score=108.08  Aligned_cols=36  Identities=33%  Similarity=0.444  Sum_probs=33.2

Q ss_pred             CCcEEEECCChHHHHHHHHHHhC--CCcEEEEccCCCC
Q psy9141           6 KKSVVIVGGGLVGSLSACMFAKN--QYEVNLYEAREDI   41 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La~~--G~~V~viE~~~~~   41 (379)
                      ++||+|||||++|+++|+.|+++  |.+|+|+|++...
T Consensus        24 ~~DVvIIGgGi~Gls~A~~La~~~~G~~V~vlE~~~~g   61 (460)
T TIGR03329        24 QADVCIVGGGFTGLWTAIMIKQQRPALDVLVLEADLCG   61 (460)
T ss_pred             eeCEEEECCCHHHHHHHHHHHHhCCCCeEEEEeCCccc
Confidence            47999999999999999999998  9999999998654

This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.

>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364

Probab=98.98  E-value=7.3e-09  Score=100.67  Aligned_cols=35  Identities=26%  Similarity=0.406  Sum_probs=32.8

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCC
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDI   41 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~   41 (379)
                      +||+|||||++|+++|+.|++.|.+|+|+|+....
T Consensus         1 ~dv~IIG~Gi~G~s~A~~L~~~G~~V~vle~~~~~   35 (365)
T TIGR03364         1 YDLIIVGAGILGLAHAYAAARRGLSVTVIERSSRA   35 (365)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCC
Confidence            59999999999999999999999999999998754

This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.

>PRK06175 L-aspartate oxidase; Provisional

Probab=98.97  E-value=1.4e-08  Score=100.97  Aligned_cols=151  Identities=16%  Similarity=0.186  Sum_probs=81.3

Q ss_pred             CCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCccccccc--------------------CHHHHHHH
Q psy9141           5 SKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLAL--------------------SVRGREAL   64 (379)
Q Consensus         5 ~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al--------------------~~~~~~~l   64 (379)
                      .++||+|||+|.|||++|+.++ .|.+|+|+||.+.....+...+.++....                    .+...+.+
T Consensus         3 ~~~DVvVVG~G~AGl~AA~~a~-~G~~V~lleK~~~~gg~s~~a~ggi~~~~~~d~~~~~~~d~~~~g~~~~d~~lv~~~   81 (433)
T PRK06175          3 LYADVLIVGSGVAGLYSALNLR-KDLKILMVSKGKLNECNTYLAQGGISVARNKDDITSFVEDTLKAGQYENNLEAVKIL   81 (433)
T ss_pred             ccccEEEECchHHHHHHHHHhc-cCCCEEEEecCCCCCCchHHHhHhheeCCCCCCHHHHHHHHHHHhCCCCCHHHHHHH
Confidence            4689999999999999999975 79999999998765433222222221000                    01111111


Q ss_pred             HH-C-CChHHHHhCCCCcee----eEEEecCCcE--EEeeCCCCCcH-------HHHhcCCCCeEEeCceEEEEEecCCe
Q psy9141          65 RR-I-GLEDKLLAHGIPMRA----RMIHGQNGKL--REIPYDPVHNQ-------VELEQYPDCNIYFQHKLINLDVNSGN  129 (379)
Q Consensus        65 ~~-l-Gl~~~l~~~~~~~~~----~~~~~~~g~~--~~~~~~~~~~~-------~~~~~~~gv~i~~~~~v~~i~~~~~~  129 (379)
                      -+ . ...+.+.+.+.++..    ..+....+..  .........+.       ..+.+..+++|++++.++++..+++.
T Consensus        82 ~~~s~e~i~wL~~~Gv~f~~~~~~~~~~~~g~~~~~r~~~~~~~~g~~l~~~L~~~~~~~~gV~i~~~t~v~~Li~~~~~  161 (433)
T PRK06175         82 ANESIENINKLIDMGLNFDKDEKELSYTKEGAHSVNRIVHFKDNTGKKVEKILLKKVKKRKNITIIENCYLVDIIENDNT  161 (433)
T ss_pred             HHHHHHHHHHHHHcCCccccCCCceeeeccCccccCeEEecCCCChHHHHHHHHHHHHhcCCCEEEECcEeeeeEecCCE
Confidence            00 0 011222222322211    0111111111  11111111111       23334569999999999998876665


Q ss_pred             EE-EE-EccCCceeEEEeecEEEecCCCChH
Q psy9141         130 VT-FY-RTEDNSETKITDNQLIIGADGAYSG  158 (379)
Q Consensus       130 v~-v~-~~~~G~~~~~i~adlVV~AdG~~S~  158 (379)
                      +. +. .. +|+..+ +.|+.||.|+|..+.
T Consensus       162 v~Gv~~~~-~g~~~~-i~Ak~VILAtGG~~~  190 (433)
T PRK06175        162 CIGAICLK-DNKQIN-IYSKVTILATGGIGG  190 (433)
T ss_pred             EEEEEEEE-CCcEEE-EEcCeEEEccCcccc
Confidence            43 22 33 555445 899999999999774

>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form

Probab=98.96  E-value=8.9e-09  Score=101.59  Aligned_cols=37  Identities=32%  Similarity=0.314  Sum_probs=33.1

Q ss_pred             CCCcEEEECCChHHHHHHHHHHhC-CC-cEEEEccCCCC
Q psy9141           5 SKKSVVIVGGGLVGSLSACMFAKN-QY-EVNLYEAREDI   41 (379)
Q Consensus         5 ~~~dVvIVGaGpaGl~~A~~La~~-G~-~V~viE~~~~~   41 (379)
                      +++||+|||||++|+++|++|+++ |. +|+|+||....
T Consensus        29 ~~~dvvIIGgGi~G~s~A~~L~~~~g~~~V~vle~~~~~   67 (407)
T TIGR01373        29 PTYDVIIVGGGGHGLATAYYLAKEHGITNVAVLEKGWLG   67 (407)
T ss_pred             ccCCEEEECCcHHHHHHHHHHHHhcCCCeEEEEEccccc
Confidence            468999999999999999999995 95 89999998644

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.

>PRK08274 tricarballylate dehydrogenase; Validated

Probab=98.96  E-value=1.9e-08  Score=101.09  Aligned_cols=36  Identities=28%  Similarity=0.280  Sum_probs=34.0

Q ss_pred             CCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCC
Q psy9141           5 SKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEARED   40 (379)
Q Consensus         5 ~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~   40 (379)
                      .++||||||+|++|+++|+.+++.|.+|+||||.+.
T Consensus         3 ~~~DVvVVG~G~aGl~AA~~aa~~G~~V~vlEk~~~   38 (466)
T PRK08274          3 SMVDVLVIGGGNAALCAALAAREAGASVLLLEAAPR   38 (466)
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence            568999999999999999999999999999999874

>PRK00711 D-amino acid dehydrogenase small subunit; Validated

Probab=98.96  E-value=3.7e-09  Score=104.52  Aligned_cols=47  Identities=19%  Similarity=0.206  Sum_probs=38.0

Q ss_pred             hcCCCCeEEeCceEEEEEecCCeEE-EEEccCCceeEEEeecEEEecCCCChH
Q psy9141         107 EQYPDCNIYFQHKLINLDVNSGNVT-FYRTEDNSETKITDNQLIIGADGAYSG  158 (379)
Q Consensus       107 ~~~~gv~i~~~~~v~~i~~~~~~v~-v~~~~~G~~~~~i~adlVV~AdG~~S~  158 (379)
                      ....|++|+++++|++++.+++++. +++. ++ +   ++||.||.|+|.+|.
T Consensus       211 ~~~~G~~i~~~~~V~~i~~~~~~~~~v~t~-~~-~---~~a~~VV~a~G~~~~  258 (416)
T PRK00711        211 AEQLGVKFRFNTPVDGLLVEGGRITGVQTG-GG-V---ITADAYVVALGSYST  258 (416)
T ss_pred             HHHCCCEEEcCCEEEEEEecCCEEEEEEeC-Cc-E---EeCCEEEECCCcchH
Confidence            3446999999999999998877764 5554 44 4   899999999999984

>PLN02661 Putative thiazole synthesis

Probab=98.95  E-value=1.3e-08  Score=96.76  Aligned_cols=137  Identities=18%  Similarity=0.232  Sum_probs=81.8

Q ss_pred             CCCcEEEECCChHHHHHHHHHHhC-CCcEEEEccCCCCCCCCCCCCccc--ccccCHHHHHHHHHCCChHHHHhCCCCce
Q psy9141           5 SKKSVVIVGGGLVGSLSACMFAKN-QYEVNLYEAREDIRNSGLSEGKSI--NLALSVRGREALRRIGLEDKLLAHGIPMR   81 (379)
Q Consensus         5 ~~~dVvIVGaGpaGl~~A~~La~~-G~~V~viE~~~~~~~~~~~~g~~i--~~al~~~~~~~l~~lGl~~~l~~~~~~~~   81 (379)
                      .++||+|||||++|+++|+.|++. |++|+|+||...+... .+.+...  ...+.....++|+++|+.         +.
T Consensus        91 ~~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~GGG-~~~gg~l~~~~vv~~~a~e~LeElGV~---------fd  160 (357)
T PLN02661         91 ADTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSPGGG-AWLGGQLFSAMVVRKPAHLFLDELGVP---------YD  160 (357)
T ss_pred             ccCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCcccccc-eeeCcccccccccccHHHHHHHHcCCC---------cc
Confidence            468999999999999999999986 8999999998765421 1111110  001222345667777652         11


Q ss_pred             eeEEEecCCcEEEeeCCCCC-cH--HHHhcCCCCeEEeCceEEEEEecCCeEE-EE------Ec-cCC----ceeEEEee
Q psy9141          82 ARMIHGQNGKLREIPYDPVH-NQ--VELEQYPDCNIYFQHKLINLDVNSGNVT-FY------RT-EDN----SETKITDN  146 (379)
Q Consensus        82 ~~~~~~~~g~~~~~~~~~~~-~~--~~~~~~~gv~i~~~~~v~~i~~~~~~v~-v~------~~-~~G----~~~~~i~a  146 (379)
                      .     .++ .......... ..  ....+.++++++.++.++++..+++.+. +.      .. .++    +... ++|
T Consensus       161 ~-----~dg-y~vv~ha~e~~stLi~ka~~~~gVkI~~~t~V~DLI~~~grVaGVVvnw~~v~~~~~~~s~~dp~~-I~A  233 (357)
T PLN02661        161 E-----QEN-YVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGDRVGGVVTNWALVAQNHDTQSCMDPNV-MEA  233 (357)
T ss_pred             c-----CCC-eeEecchHHHHHHHHHHHHhcCCCEEEeCeEeeeEEecCCEEEEEEeecchhhhccCCCCccceeE-EEC
Confidence            0     001 0000000000 01  3344557999999999999988776432 22      11 011    2234 899


Q ss_pred             cEEEecCCCChH
Q psy9141         147 QLIIGADGAYSG  158 (379)
Q Consensus       147 dlVV~AdG~~S~  158 (379)
                      +.||.|+|....
T Consensus       234 kaVVlATGh~g~  245 (357)
T PLN02661        234 KVVVSSCGHDGP  245 (357)
T ss_pred             CEEEEcCCCCCc
Confidence            999999996653

>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.94  E-value=2.4e-08  Score=102.63  Aligned_cols=153  Identities=14%  Similarity=0.166  Sum_probs=84.4

Q ss_pred             CCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccC-----HHHHH-----HHHH--------
Q psy9141           5 SKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALS-----VRGRE-----ALRR--------   66 (379)
Q Consensus         5 ~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~-----~~~~~-----~l~~--------   66 (379)
                      .++||+|||+|.|||++|+.+++.|.+|+|+||.+.....+...+.++...+.     ..+.+     .++.        
T Consensus         4 ~~~DVvVVG~G~AGl~AAl~Aae~G~~V~lveK~~~~~g~s~~a~Ggi~~~~~~~~~~~Ds~e~~~~d~~~~g~~~~d~~   83 (566)
T PRK06452          4 IEYDAVVIGGGLAGLMSAHEIASAGFKVAVISKVFPTRSHSAAAEGGIAAYIPGNSDPNDNPDYMTYDTVKGGDYLVDQD   83 (566)
T ss_pred             ccCcEEEECccHHHHHHHHHHHHCCCcEEEEEccCCCCCcchhhccchhhhccccCCCcccHHHHHHHHHHhhccCCCHH
Confidence            46899999999999999999999999999999987544332222222211110     01111     1100        


Q ss_pred             ----C-----CChHHHHhCCCCcee-----eEEEecCCcE-EEeeC-CCCCcH------HHHhcCCCCeEEeCceEEEEE
Q psy9141          67 ----I-----GLEDKLLAHGIPMRA-----RMIHGQNGKL-REIPY-DPVHNQ------VELEQYPDCNIYFQHKLINLD  124 (379)
Q Consensus        67 ----l-----Gl~~~l~~~~~~~~~-----~~~~~~~g~~-~~~~~-~~~~~~------~~~~~~~gv~i~~~~~v~~i~  124 (379)
                          +     ...+.+...+.++..     .......+.. .+..+ ....+.      .......+++++.++.++++.
T Consensus        84 ~v~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~~G~~i~~~L~~~~~~~gv~i~~~~~~~~Li  163 (566)
T PRK06452         84 AAELLSNKSGEIVMLLERWGALFNRQPDGRVAVRYFGGQTYPRTRFVGDKTGMALLHTLFERTSGLNVDFYNEWFSLDLV  163 (566)
T ss_pred             HHHHHHHHHHHHHHHHHHCCCccccCCCCcEeccCCcCccCCeeEecCCCCHHHHHHHHHHHHHhCCCEEEeCcEEEEEE
Confidence                0     011223333443321     0000111111 01111 111121      111223589999999999998


Q ss_pred             ecCCeEE-EE--EccCCceeEEEeecEEEecCCCChH
Q psy9141         125 VNSGNVT-FY--RTEDNSETKITDNQLIIGADGAYSG  158 (379)
Q Consensus       125 ~~~~~v~-v~--~~~~G~~~~~i~adlVV~AdG~~S~  158 (379)
                      .+++.|. +.  ..++|+... +.|+-||.|+|.++.
T Consensus       164 ~~~g~v~Gv~~~~~~~g~~~~-i~AkaVVLATGG~~~  199 (566)
T PRK06452        164 TDNKKVVGIVAMQMKTLTPFF-FKTKAVVLATGGMGM  199 (566)
T ss_pred             EECCEEEEEEEEECCCCeEEE-EEeCeEEECCCcccc
Confidence            8766554 22  221455555 899999999999984

>PLN02464 glycerol-3-phosphate dehydrogenase

Probab=98.93  E-value=9.3e-09  Score=106.60  Aligned_cols=39  Identities=28%  Similarity=0.301  Sum_probs=35.2

Q ss_pred             CCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCC
Q psy9141           5 SKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRN   43 (379)
Q Consensus         5 ~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~   43 (379)
                      .++||+|||||++|+++|+.|+++|++|+|||+.+....
T Consensus        70 ~~~DVvVIGGGi~Ga~~A~~lA~rGl~V~LvE~~d~a~G  108 (627)
T PLN02464         70 EPLDVLVVGGGATGAGVALDAATRGLRVGLVEREDFSSG  108 (627)
T ss_pred             CccCEEEECCCHHHHHHHHHHHhCCCEEEEEeccccCCC
Confidence            358999999999999999999999999999999965543

>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]

Probab=98.93  E-value=7.9e-09  Score=102.85  Aligned_cols=39  Identities=23%  Similarity=0.455  Sum_probs=36.0

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHhCCCc-EEEEccCCCCC
Q psy9141           4 NSKKSVVIVGGGLVGSLSACMFAKNQYE-VNLYEAREDIR   42 (379)
Q Consensus         4 m~~~dVvIVGaGpaGl~~A~~La~~G~~-V~viE~~~~~~   42 (379)
                      +..+||+|||||++|+++|+.|.+.|.+ ++|+||+....
T Consensus         6 ~~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~G   45 (443)
T COG2072           6 ATHTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVG   45 (443)
T ss_pred             CCcccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCcC
Confidence            4578999999999999999999999998 99999998664

>PRK07804 L-aspartate oxidase; Provisional

Probab=98.93  E-value=2.2e-08  Score=102.39  Aligned_cols=38  Identities=21%  Similarity=0.199  Sum_probs=35.1

Q ss_pred             CCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCC
Q psy9141           5 SKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIR   42 (379)
Q Consensus         5 ~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~   42 (379)
                      .++||+|||+|.|||++|+.+++.|.+|+|+||.+...
T Consensus        15 ~~~DVlVIG~G~AGl~AAi~aae~G~~VilleK~~~~~   52 (541)
T PRK07804         15 DAADVVVVGSGVAGLTAALAARRAGRRVLVVTKAALDD   52 (541)
T ss_pred             cccCEEEECccHHHHHHHHHHHHcCCeEEEEEccCCCC
Confidence            36899999999999999999999999999999998654

>PF00890 FAD_binding_2: FAD binding domain of the Pfam family

Probab=98.93  E-value=1.1e-08  Score=101.21  Aligned_cols=150  Identities=23%  Similarity=0.285  Sum_probs=77.8

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccC---------HHH----HHHHHHCC------
Q psy9141           8 SVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALS---------VRG----REALRRIG------   68 (379)
Q Consensus         8 dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~---------~~~----~~~l~~lG------   68 (379)
                      ||+|||+|++||++|+.+++.|.+|+||||.+.........+..+...-+         ...    ..+++...      
T Consensus         1 DVvVIG~G~AGl~AA~~Aae~G~~V~lvek~~~~gg~~~~s~g~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~   80 (417)
T PF00890_consen    1 DVVVIGGGLAGLAAAIEAAEAGAKVLLVEKGPRLGGSSAFSSGGFDAAGTPPQREAGIEDSPEEFFQDIMAAGGGLNDPD   80 (417)
T ss_dssp             SEEEE-SSHHHHHHHHHHHHTTT-EEEEESSSGGGSGGGGTCSEEEESSSHSSHHTTTTCHHHHHHHHHHHHTTT-S-HH
T ss_pred             CEEEECCCHHHHHHHHHHhhhcCeEEEEEeecccccccccccCceeeecccccccccccccccccceeeecccccccccc
Confidence            89999999999999999999999999999998733221111111111000         001    11122221      


Q ss_pred             -----------ChHHHHhCCCCcee-----eEEEecCCcE-E-EeeCCCC--------CcH------HHHhcCCCCeEEe
Q psy9141          69 -----------LEDKLLAHGIPMRA-----RMIHGQNGKL-R-EIPYDPV--------HNQ------VELEQYPDCNIYF  116 (379)
Q Consensus        69 -----------l~~~l~~~~~~~~~-----~~~~~~~g~~-~-~~~~~~~--------~~~------~~~~~~~gv~i~~  116 (379)
                                 ..+.+.+.+.++..     .......+.. . ...+...        .+.      ....+..+++|++
T Consensus        81 ~~~~~~~~~~~~~~~l~~~g~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~gv~i~~  160 (417)
T PF00890_consen   81 LVRAFVENSPEAIDWLEELGVPFRRDEDGPFAPTPFGGHSPRWRSPPGNPDPPFGGLGGGKALIEALAKAAEEAGVDIRF  160 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHTT--B-BGTTSSBCEEEETTESSTEEEEESSTTSSSHCCCHHHHHHHHHHHHHHHTTEEEEE
T ss_pred             hhhhhhhcccceehhhhhhcccccccccccccccccCCccccceeeeccccccccccccHHHHHHHHHHHHhhcCeeeec
Confidence                       01122223333222     1111111100 0 1111111        111      2223335799999


Q ss_pred             CceEEEEEecCCeEE-EEEc--cCCceeEEEeecEEEecCCCChH
Q psy9141         117 QHKLINLDVNSGNVT-FYRT--EDNSETKITDNQLIIGADGAYSG  158 (379)
Q Consensus       117 ~~~v~~i~~~~~~v~-v~~~--~~G~~~~~i~adlVV~AdG~~S~  158 (379)
                      +++++++..+++.|+ +...  .+|+..+ +.|+-||.|+|.++.
T Consensus       161 ~~~~~~Li~e~g~V~Gv~~~~~~~g~~~~-i~A~aVIlAtGG~~~  204 (417)
T PF00890_consen  161 NTRVTDLITEDGRVTGVVAENPADGEFVR-IKAKAVILATGGFGG  204 (417)
T ss_dssp             SEEEEEEEEETTEEEEEEEEETTTCEEEE-EEESEEEE----BGG
T ss_pred             cceeeeEEEeCCceeEEEEEECCCCeEEE-EeeeEEEeccCcccc
Confidence            999999999887655 3322  3788777 999999999999995

; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....

>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.92  E-value=3.2e-08  Score=102.29  Aligned_cols=37  Identities=24%  Similarity=0.208  Sum_probs=34.1

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCC
Q psy9141           6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIR   42 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~   42 (379)
                      ++||+|||||+|||++|+.+++.|.+|+|+||.....
T Consensus        12 ~~DVvVIG~G~AGl~AAl~Aa~~G~~V~lveK~~~~~   48 (598)
T PRK09078         12 KYDVVVVGAGGAGLRATLGMAEAGLKTACITKVFPTR   48 (598)
T ss_pred             ccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCCCC
Confidence            5899999999999999999999999999999987543

>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=98.91  E-value=9e-09  Score=103.84  Aligned_cols=39  Identities=26%  Similarity=0.467  Sum_probs=35.8

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCC
Q psy9141           4 NSKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIR   42 (379)
Q Consensus         4 m~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~   42 (379)
                      |+.+||||||||+.||++|..|+++|++|+|+||++.+.
T Consensus         1 ~~~~dvvVIGaG~~GL~aAa~LA~~G~~V~VlE~~~~~G   39 (487)
T COG1233           1 MPMYDVVVIGAGLNGLAAAALLARAGLKVTVLEKNDRVG   39 (487)
T ss_pred             CCCccEEEECCChhHHHHHHHHHhCCCEEEEEEecCCCC
Confidence            346899999999999999999999999999999998765

>PRK08071 L-aspartate oxidase; Provisional

Probab=98.91  E-value=2e-08  Score=101.86  Aligned_cols=151  Identities=16%  Similarity=0.246  Sum_probs=83.9

Q ss_pred             CCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCH-HHH-----HHHHHC-----------
Q psy9141           5 SKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSV-RGR-----EALRRI-----------   67 (379)
Q Consensus         5 ~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~-~~~-----~~l~~l-----------   67 (379)
                      +.+||+|||+|.|||++|+.+++ |.+|+|+||.+.....+...+.++...+.+ .+.     .+++.-           
T Consensus         2 ~~~DVlVVG~G~AGl~AAl~a~~-g~~V~lveK~~~~~g~s~~a~Ggi~~~~~~~ds~e~~~~d~~~~g~~~~d~~~v~~   80 (510)
T PRK08071          2 PSADVIIIGSGIAALTVAKELCH-EYNVIIITKKTKRNSNSHLAQGGIAAAVATYDSPNDHFEDTLVAGCHHNNERAVRY   80 (510)
T ss_pred             CccCEEEECccHHHHHHHHHhhc-CCCEEEEeccCCCCCCchhcCccceecccCCCCHHHHHHHHHHhccCcCCHHHHHH
Confidence            46899999999999999999987 899999999986554433223333222211 000     111100           


Q ss_pred             ------CChHHHHhCCCCcee-----eEEEecCCcE-EEeeC--CCCCcH-----HHHhcCCCCeEEeCceEEEEEecCC
Q psy9141          68 ------GLEDKLLAHGIPMRA-----RMIHGQNGKL-REIPY--DPVHNQ-----VELEQYPDCNIYFQHKLINLDVNSG  128 (379)
Q Consensus        68 ------Gl~~~l~~~~~~~~~-----~~~~~~~g~~-~~~~~--~~~~~~-----~~~~~~~gv~i~~~~~v~~i~~~~~  128 (379)
                            ...+.+.+.+.++..     .......+.. .+..+  +...+.     .......+++++.++.++++..+++
T Consensus        81 ~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~gd~~g~~i~~~L~~~~~~gV~i~~~~~v~~Li~~~g  160 (510)
T PRK08071         81 LVEEGPKEIQELIENGMPFDGDETGPLHLGKEGAHRKRRILHAGGDATGKNLLEHLLQELVPHVTVVEQEMVIDLIIENG  160 (510)
T ss_pred             HHHHHHHHHHHHHHcCCccccCCCCceeeccCcCccCCeEEecCCCCcHHHHHHHHHHHHhcCCEEEECeEhhheeecCC
Confidence                  011223333444321     0111111111 01111  111121     1111125899999999999877666


Q ss_pred             eEE---EEEccCCceeEEEeecEEEecCCCChH
Q psy9141         129 NVT---FYRTEDNSETKITDNQLIIGADGAYSG  158 (379)
Q Consensus       129 ~v~---v~~~~~G~~~~~i~adlVV~AdG~~S~  158 (379)
                      .+.   +... +|+... +.|+.||.|+|.++.
T Consensus       161 ~v~Gv~~~~~-~g~~~~-i~Ak~VVlATGG~~~  191 (510)
T PRK08071        161 RCIGVLTKDS-EGKLKR-YYADYVVLASGGCGG  191 (510)
T ss_pred             EEEEEEEEEC-CCcEEE-EEcCeEEEecCCCcc
Confidence            443   3333 565545 899999999999885

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase

Probab=98.91  E-value=1.4e-08  Score=95.51  Aligned_cols=111  Identities=21%  Similarity=0.297  Sum_probs=72.9

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeEEE
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARMIH   86 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~   86 (379)
                      |||+||||||+|+++|..|++.|++|+|||+.+ ..      |. +  ....             .+.  ..|.  .. .
T Consensus         1 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~-~g------g~-~--~~~~-------------~~~--~~~~--~~-~   52 (300)
T TIGR01292         1 YDVIIIGAGPAGLTAAIYAARANLKTLIIEGME-PG------GQ-L--TTTT-------------EVE--NYPG--FP-E   52 (300)
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCCEEEEeccC-CC------cc-e--eecc-------------ccc--ccCC--CC-C
Confidence            699999999999999999999999999999875 21      21 1  0000             000  0000  00 0


Q ss_pred             ecCCcEEEeeCCCCCcH-HHHhcCCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEEEecCCCCh
Q psy9141          87 GQNGKLREIPYDPVHNQ-VELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAYS  157 (379)
Q Consensus        87 ~~~g~~~~~~~~~~~~~-~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlVV~AdG~~S  157 (379)
                      ...+.      . .... ....+..++++++ ++|++++.+++.+++.+. +|.+   +++|.||.|+|...
T Consensus        53 ~~~~~------~-~~~~l~~~~~~~gv~~~~-~~v~~v~~~~~~~~v~~~-~~~~---~~~d~liiAtG~~~  112 (300)
T TIGR01292        53 GISGP------E-LMEKMKEQAVKFGAEIIY-EEVIKVDLSDRPFKVKTG-DGKE---YTAKAVIIATGASA  112 (300)
T ss_pred             CCChH------H-HHHHHHHHHHHcCCeEEE-EEEEEEEecCCeeEEEeC-CCCE---EEeCEEEECCCCCc
Confidence            00000      0 0001 2222335899998 899999988888888887 7776   99999999999865

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).

>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.89  E-value=5.9e-08  Score=100.14  Aligned_cols=41  Identities=29%  Similarity=0.451  Sum_probs=36.3

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCC
Q psy9141           4 NSKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNS   44 (379)
Q Consensus         4 m~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~   44 (379)
                      |+++||+|||+|+|||++|+.+++.|.+|+|+||.+.....
T Consensus         1 ~~~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lieK~~~~~g~   41 (589)
T PRK08641          1 MAKGKVIVVGGGLAGLMATIKAAEAGVHVDLFSLVPVKRSH   41 (589)
T ss_pred             CCCccEEEECchHHHHHHHHHHHHcCCcEEEEEccCCCCCc
Confidence            45679999999999999999999999999999998865433

>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]

Probab=98.89  E-value=5.2e-09  Score=94.16  Aligned_cols=136  Identities=21%  Similarity=0.245  Sum_probs=77.5

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCC--------CCCC-CcccccccCHH------HHHHHHHCCChHH
Q psy9141           8 SVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNS--------GLSE-GKSINLALSVR------GREALRRIGLEDK   72 (379)
Q Consensus         8 dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~--------~~~~-g~~i~~al~~~------~~~~l~~lGl~~~   72 (379)
                      +|+|||+||+|+++|..|+..|.+|+|+||.......        +.+| |..   .+.++      ..+.+.+-|+.+.
T Consensus         3 siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~GvGGRlAtRRl~~g~~DhGAq---Yfk~~~~~F~~~Ve~~~~~glV~~   79 (331)
T COG3380           3 SIAIVGAGIAGLAAAYALREAGREVTVFEKGRGVGGRLATRRLDGGRFDHGAQ---YFKPRDELFLRAVEALRDDGLVDV   79 (331)
T ss_pred             cEEEEccchHHHHHHHHHHhcCcEEEEEEcCCCcccchheeccCCccccccce---eecCCchHHHHHHHHHHhCCceee
Confidence            7999999999999999999999999999999755311        0111 111   12222      2333333343221


Q ss_pred             HHhCCCCceeeEEEecCCcEEEeeCCCCCcH--HHHhcCCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEEE
Q psy9141          73 LLAHGIPMRARMIHGQNGKLREIPYDPVHNQ--VELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLII  150 (379)
Q Consensus        73 l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~--~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlVV  150 (379)
                      ....-...++..   ...+....+|....+.  .......+.+|.++++|+.+...++.|++.++ +|.. . ..+|.||
T Consensus        80 W~~~~~~~~~~~---~~~~~d~~pyvg~pgmsalak~LAtdL~V~~~~rVt~v~~~~~~W~l~~~-~g~~-~-~~~d~vv  153 (331)
T COG3380          80 WTPAVWTFTGDG---SPPRGDEDPYVGEPGMSALAKFLATDLTVVLETRVTEVARTDNDWTLHTD-DGTR-H-TQFDDVV  153 (331)
T ss_pred             ccccccccccCC---CCCCCCCCccccCcchHHHHHHHhccchhhhhhhhhhheecCCeeEEEec-CCCc-c-cccceEE
Confidence            100000000000   0011012223322221  11122247889999999999999999999997 5543 2 6788888


Q ss_pred             ec
Q psy9141         151 GA  152 (379)
Q Consensus       151 ~A  152 (379)
                      .|
T Consensus       154 la  155 (331)
T COG3380         154 LA  155 (331)
T ss_pred             Ee
Confidence            77

>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional

Probab=98.89  E-value=3.9e-08  Score=101.92  Aligned_cols=151  Identities=18%  Similarity=0.203  Sum_probs=84.9

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccC---HHHHH-----HHHH-----------
Q psy9141           6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALS---VRGRE-----ALRR-----------   66 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~---~~~~~-----~l~~-----------   66 (379)
                      ++||+|||+|.|||++|+.+++.|.+|+|+||.+.....+...+.++...+.   ..+.+     +++.           
T Consensus        29 ~~DVlVIG~G~AGl~AAi~Aa~~G~~V~lveK~~~~~g~t~~a~Ggi~a~~~~~~~Ds~e~~~~D~~~~g~~~~d~~lv~  108 (617)
T PTZ00139         29 TYDAVVVGAGGAGLRAALGLVELGYKTACISKLFPTRSHTVAAQGGINAALGNMTEDDWRWHAYDTVKGSDWLGDQDAIQ  108 (617)
T ss_pred             ccCEEEECccHHHHHHHHHHHHcCCcEEEEeccCCCCCCchhhcCCeeEEecCCCCCCHHHHHHHHHHHhCCCCCHHHHH
Confidence            6899999999999999999999999999999997654432222223321111   11111     1110           


Q ss_pred             -C-----CChHHHHhCCCCceee---EEE--ecCCcE---------EEeeCCC-CCcH------HHHhcCCCCeEEeCce
Q psy9141          67 -I-----GLEDKLLAHGIPMRAR---MIH--GQNGKL---------REIPYDP-VHNQ------VELEQYPDCNIYFQHK  119 (379)
Q Consensus        67 -l-----Gl~~~l~~~~~~~~~~---~~~--~~~g~~---------~~~~~~~-~~~~------~~~~~~~gv~i~~~~~  119 (379)
                       +     ...+.+.+.+.++...   .+.  ...+..         .+..+.. ..+.      .......+++++.++.
T Consensus       109 ~l~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~s~~~~~~~~~~r~~~~~d~tG~~i~~~L~~~a~~~gv~i~~~~~  188 (617)
T PTZ00139        109 YMCREAPQAVLELESYGLPFSRTKDGKIYQRAFGGQSLKFGKGGQAYRCAAAADRTGHAMLHTLYGQSLKYDCNFFIEYF  188 (617)
T ss_pred             HHHHHHHHHHHHHHhcCCceEeCCCCcEeecccCcccccccCCCccceeeecCCCcHHHHHHHHHHHHHhCCCEEEeceE
Confidence             0     0122333344444210   000  001110         0111100 0111      1223346899999999


Q ss_pred             EEEEEe-cCCeEE---E-EEccCCceeEEEeecEEEecCCCChH
Q psy9141         120 LINLDV-NSGNVT---F-YRTEDNSETKITDNQLIIGADGAYSG  158 (379)
Q Consensus       120 v~~i~~-~~~~v~---v-~~~~~G~~~~~i~adlVV~AdG~~S~  158 (379)
                      ++++.. +++.+.   + ... +|+... +.|+.||.|+|.++.
T Consensus       189 ~~~Li~~~~g~v~Gv~~~~~~-~g~~~~-i~AkaVVLATGG~~~  230 (617)
T PTZ00139        189 ALDLIMDEDGECRGVIAMSME-DGSIHR-FRAHYTVIATGGYGR  230 (617)
T ss_pred             EEEEEECCCCEEEEEEEEECC-CCeEEE-EECCcEEEeCCCCcc
Confidence            999876 445443   2 223 677666 899999999999874

>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.89  E-value=4.3e-08  Score=101.08  Aligned_cols=154  Identities=16%  Similarity=0.126  Sum_probs=85.5

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccC---HHH--------------------
Q psy9141           4 NSKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALS---VRG--------------------   60 (379)
Q Consensus         4 m~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~---~~~--------------------   60 (379)
                      ..++||+|||+|.|||++|+.+++.|.+|+|+||.......+...+.++..++.   ..+                    
T Consensus         5 ~~~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lleK~~~~~g~t~~a~Ggi~a~~~~~~~Ds~e~~~~D~~~~g~~~~d~~~   84 (588)
T PRK08958          5 VREFDAVVIGAGGAGMRAALQISQSGQSCALLSKVFPTRSHTVSAQGGITVALGNTHEDNWEWHMYDTVKGSDYIGDQDA   84 (588)
T ss_pred             ccccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCCCCCccHHhhhhHhhhcCCCCCCCHHHHHHHHHHHhCCCCCHHH
Confidence            346899999999999999999999999999999986544322211222211111   011                    


Q ss_pred             HHHHHHC--CChHHHHhCCCCceee---EEE--ecCCcE--------EEeeCC-CCCcH------HHHhcCCCCeEEeCc
Q psy9141          61 REALRRI--GLEDKLLAHGIPMRAR---MIH--GQNGKL--------REIPYD-PVHNQ------VELEQYPDCNIYFQH  118 (379)
Q Consensus        61 ~~~l~~l--Gl~~~l~~~~~~~~~~---~~~--~~~g~~--------~~~~~~-~~~~~------~~~~~~~gv~i~~~~  118 (379)
                      .+.+-+-  ...+.+.+.+.++...   .+.  ...+..        .+..+. ...+.      .......+++++.++
T Consensus        85 v~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~~~~~~~~r~~~~~~~~G~~i~~~L~~~~~~~gi~i~~~~  164 (588)
T PRK08958         85 IEYMCKTGPEAILELEHMGLPFSRLDDGRIYQRPFGGQSKNFGGEQAARTAAAADRTGHALLHTLYQQNLKNHTTIFSEW  164 (588)
T ss_pred             HHHHHHHHHHHHHHHHHcCCCcccCCCCceeecccccccccccccccceeEecCCCCHHHHHHHHHHHhhhcCCEEEeCc
Confidence            1111100  1123333344444210   000  001110        011111 11122      122234689999999


Q ss_pred             eEEEEEec-CCeEE---EE-EccCCceeEEEeecEEEecCCCChHH
Q psy9141         119 KLINLDVN-SGNVT---FY-RTEDNSETKITDNQLIIGADGAYSGV  159 (379)
Q Consensus       119 ~v~~i~~~-~~~v~---v~-~~~~G~~~~~i~adlVV~AdG~~S~v  159 (379)
                      .++++..+ ++.+.   +. .. +|+... +.|+-||.|+|.++..
T Consensus       165 ~~~~Li~~~~g~v~Gv~~~~~~-~g~~~~-i~AkaVILATGG~~~~  208 (588)
T PRK08958        165 YALDLVKNQDGAVVGCTAICIE-TGEVVY-FKARATVLATGGAGRI  208 (588)
T ss_pred             EEEEEEECCCCEEEEEEEEEcC-CCcEEE-EEcCeEEECCCCcccc
Confidence            99998875 44433   22 33 677666 8999999999999853

>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.89  E-value=3.9e-08  Score=102.07  Aligned_cols=38  Identities=18%  Similarity=0.112  Sum_probs=34.7

Q ss_pred             CCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCC
Q psy9141           5 SKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIR   42 (379)
Q Consensus         5 ~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~   42 (379)
                      .++||+|||+|.||+++|+.+++.|.+|+||||.+...
T Consensus         7 ~~~DVvVIG~G~AGl~AAl~Aae~G~~V~lieK~~~~~   44 (626)
T PRK07803          7 HSYDVVVIGAGGAGLRAAIEARERGLRVAVVCKSLFGK   44 (626)
T ss_pred             eeecEEEECcCHHHHHHHHHHHHCCCCEEEEeccCCCC
Confidence            35899999999999999999999999999999987554

>PF08491 SE: Squalene epoxidase; InterPro: IPR013698 This domain is found in squalene epoxidase (SE) and related proteins which are found in taxonomically diverse groups of eukaryotes and also in bacteria

Probab=98.88  E-value=7.5e-09  Score=94.73  Aligned_cols=36  Identities=0%  Similarity=-0.130  Sum_probs=33.4

Q ss_pred             CCcEEEe-eecccCCCcchhhhhHHHHHHHHHHhhcc
Q psy9141         269 KNPIKIQ-SHAVVNEFYKQESLIVASLCQEKIEKMFD  304 (379)
Q Consensus       269 ~~~~liG-Ah~~~~P~~GQG~n~gl~Da~~L~~~l~~  304 (379)
                      .+++++| |+.|.||.+||||+.|+.|+..|.+.|..
T Consensus       130 ~G~vllGDA~nmrHPLTGgGMTVAl~Dv~lL~~lL~~  166 (276)
T PF08491_consen  130 PGVVLLGDAANMRHPLTGGGMTVALNDVVLLRDLLSP  166 (276)
T ss_pred             CCEEEEehhhcCcCCccccchhhHHHHHHHHHHHHhh
Confidence            3799999 99999999999999999999999998875

SE was first cloned from Saccharomyces cerevisiae (Baker's yeast) where it was named ERG1. It contains a putative FAD binding site and is a key enzyme in the sterol biosynthetic pathway []. Putative transmembrane regions are found to the protein's C terminus. ; GO: 0004506 squalene monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process, 0016021 integral to membrane

>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria

Probab=98.88  E-value=1.1e-08  Score=98.63  Aligned_cols=139  Identities=22%  Similarity=0.285  Sum_probs=78.7

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEE-ccCCCCCCCCCCCCcccccccC-HHHHHHHHHCC-ChHHHHhCCCCceeeE
Q psy9141           8 SVVIVGGGLVGSLSACMFAKNQYEVNLY-EAREDIRNSGLSEGKSINLALS-VRGREALRRIG-LEDKLLAHGIPMRARM   84 (379)
Q Consensus         8 dVvIVGaGpaGl~~A~~La~~G~~V~vi-E~~~~~~~~~~~~g~~i~~al~-~~~~~~l~~lG-l~~~l~~~~~~~~~~~   84 (379)
                      ||+|||||+||+.+|+++|+.|.+|+++ ++.+.....+  +..++. .+. ....+.++.+| ..-.+.... . -..+
T Consensus         1 DViVVGgG~AG~eAA~aaAr~G~~V~Lit~~~d~i~~~~--Cnpsig-g~~kg~L~~Eidalgg~m~~~aD~~-~-i~~~   75 (392)
T PF01134_consen    1 DVIVVGGGHAGCEAALAAARMGAKVLLITHNTDTIGEMS--CNPSIG-GIAKGHLVREIDALGGLMGRAADET-G-IHFR   75 (392)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTT--EEEEES-GGGTT--S--SSSEEE-STTHHHHHHHHHHTT-SHHHHHHHH-E-EEEE
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEeeccccccccc--chhhhc-cccccchhHHHhhhhhHHHHHHhHh-h-hhhh
Confidence            8999999999999999999999999999 4444333221  122221 111 22345556665 222222110 0 0122


Q ss_pred             EEecC-C---cEEEeeCCCC-CcH---HHHhcCCCCeEEeCceEEEEEecCCeEE-EEEccCCceeEEEeecEEEecCCC
Q psy9141          85 IHGQN-G---KLREIPYDPV-HNQ---VELEQYPDCNIYFQHKLINLDVNSGNVT-FYRTEDNSETKITDNQLIIGADGA  155 (379)
Q Consensus        85 ~~~~~-g---~~~~~~~~~~-~~~---~~~~~~~gv~i~~~~~v~~i~~~~~~v~-v~~~~~G~~~~~i~adlVV~AdG~  155 (379)
                      +.+.. |   +..+...+.. +.+   ..+...++++|. ..+|+++..+++.+. |.+. +|+.   +.||.||.|+|.
T Consensus        76 ~lN~skGpav~a~r~qvDr~~y~~~~~~~l~~~~nl~i~-~~~V~~l~~e~~~v~GV~~~-~g~~---~~a~~vVlaTGt  150 (392)
T PF01134_consen   76 MLNRSKGPAVHALRAQVDRDKYSRAMREKLESHPNLTII-QGEVTDLIVENGKVKGVVTK-DGEE---IEADAVVLATGT  150 (392)
T ss_dssp             EESTTS-GGCTEEEEEE-HHHHHHHHHHHHHTSTTEEEE-ES-EEEEEECTTEEEEEEET-TSEE---EEECEEEE-TTT
T ss_pred             cccccCCCCccchHhhccHHHHHHHHHHHHhcCCCeEEE-EcccceEEecCCeEEEEEeC-CCCE---EecCEEEEeccc
Confidence            22211 1   1111111111 011   455667899997 468999998888766 7777 8988   999999999999


Q ss_pred             C
Q psy9141         156 Y  156 (379)
Q Consensus       156 ~  156 (379)
                      +
T Consensus       151 f  151 (392)
T PF01134_consen  151 F  151 (392)
T ss_dssp             G
T ss_pred             c
Confidence            4

Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.

>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=98.87  E-value=1e-08  Score=96.67  Aligned_cols=114  Identities=20%  Similarity=0.206  Sum_probs=70.5

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHhCCCc-EEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCcee
Q psy9141           4 NSKKSVVIVGGGLVGSLSACMFAKNQYE-VNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRA   82 (379)
Q Consensus         4 m~~~dVvIVGaGpaGl~~A~~La~~G~~-V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~   82 (379)
                      |+.+||+|||||||||++|..+++++++ ++|+|+....       |.     +.           .+.           
T Consensus         1 ~~~~DviIIG~GPAGl~AAiya~r~~l~~~li~~~~~~g-------g~-----~~-----------~~~-----------   46 (305)
T COG0492           1 MKIYDVIIIGGGPAGLTAAIYAARAGLKVVLILEGGEPG-------GQ-----LT-----------KTT-----------   46 (305)
T ss_pred             CceeeEEEECCCHHHHHHHHHHHHcCCCcEEEEecCCcC-------Cc-----cc-----------cce-----------
Confidence            3569999999999999999999999999 6666654321       10     00           000           


Q ss_pred             eEEEecCCcEEEeeCCCCCcH-HHHhcCCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEEEecCCCChH
Q psy9141          83 RMIHGQNGKLREIPYDPVHNQ-VELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAYSG  158 (379)
Q Consensus        83 ~~~~~~~g~~~~~~~~~~~~~-~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlVV~AdG~~S~  158 (379)
                       .+.+..|.....+......+ ...+...++++.. ..|.+++..++.+.+++. +|+    ++|+.||.|+|....
T Consensus        47 -~venypg~~~~~~g~~L~~~~~~~a~~~~~~~~~-~~v~~v~~~~~~F~v~t~-~~~----~~ak~vIiAtG~~~~  116 (305)
T COG0492          47 -DVENYPGFPGGILGPELMEQMKEQAEKFGVEIVE-DEVEKVELEGGPFKVKTD-KGT----YEAKAVIIATGAGAR  116 (305)
T ss_pred             -eecCCCCCccCCchHHHHHHHHHHHhhcCeEEEE-EEEEEEeecCceEEEEEC-CCe----EEEeEEEECcCCccc
Confidence             11111111000000000001 2333457888877 677778776667777776 665    889999999999874

>PRK09077 L-aspartate oxidase; Provisional

Probab=98.87  E-value=5.5e-08  Score=99.33  Aligned_cols=155  Identities=18%  Similarity=0.243  Sum_probs=84.6

Q ss_pred             CCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCH-HH-H----HHHHHC-C---------
Q psy9141           5 SKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSV-RG-R----EALRRI-G---------   68 (379)
Q Consensus         5 ~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~-~~-~----~~l~~l-G---------   68 (379)
                      .++||+|||+|.|||++|+.+++. .+|+|+||.......+...+.++...+.. .+ .    .+++.- |         
T Consensus         7 ~~~DVlVVG~G~AGl~AA~~aa~~-~~VilveK~~~~~g~t~~a~Ggi~~~~~~~ds~e~~~~d~~~~g~~~~d~~~v~~   85 (536)
T PRK09077          7 HQCDVLIIGSGAAGLSLALRLAEH-RRVAVLSKGPLSEGSTFYAQGGIAAVLDETDSIESHVEDTLIAGAGLCDEDAVRF   85 (536)
T ss_pred             ccCCEEEECchHHHHHHHHHHHHC-CCEEEEeccCCCCCChhhccCCeeeccCCCccHHHHHHHHHHHccCCCCHHHHHH
Confidence            368999999999999999999987 89999999986543322222232211111 01 0    111100 0         


Q ss_pred             -------ChHHHHhCCCCceee---------EEEecCCcE-EE-eeCCCCCcH-------HHHhcCCCCeEEeCceEEEE
Q psy9141          69 -------LEDKLLAHGIPMRAR---------MIHGQNGKL-RE-IPYDPVHNQ-------VELEQYPDCNIYFQHKLINL  123 (379)
Q Consensus        69 -------l~~~l~~~~~~~~~~---------~~~~~~g~~-~~-~~~~~~~~~-------~~~~~~~gv~i~~~~~v~~i  123 (379)
                             ..+.+.+.+.++...         ......+.. .+ +......+.       ..+.+.++++|+.++.++++
T Consensus        86 ~~~~~~~~i~~L~~~Gv~f~~~~~~~g~~~~~~~~~gg~~~~r~~~~~~~~G~~i~~~L~~~~~~~~~I~v~~~~~v~~L  165 (536)
T PRK09077         86 IAENAREAVQWLIDQGVPFTTDEQANGEEGYHLTREGGHSHRRILHAADATGKAVQTTLVERARNHPNITVLERHNAIDL  165 (536)
T ss_pred             HHHHHHHHHHHHHHcCCccccCCCCCccccccccCCCCccCCceEecCCCCHHHHHHHHHHHHHhCCCcEEEeeEEeeee
Confidence                   112222333333210         000011111 00 011111121       23445579999999999998


Q ss_pred             EecC------CeEE-EE--EccCCceeEEEeecEEEecCCCChHHHH
Q psy9141         124 DVNS------GNVT-FY--RTEDNSETKITDNQLIIGADGAYSGVRK  161 (379)
Q Consensus       124 ~~~~------~~v~-v~--~~~~G~~~~~i~adlVV~AdG~~S~vr~  161 (379)
                      ..++      +.+. +.  ...+|+... +.|+.||.|+|.++.+..
T Consensus       166 i~~~~~~~~~g~v~Gv~~~~~~~g~~~~-i~Ak~VVlATGG~~~~~~  211 (536)
T PRK09077        166 ITSDKLGLPGRRVVGAYVLNRNKERVET-IRAKFVVLATGGASKVYL  211 (536)
T ss_pred             eecccccCCCCEEEEEEEEECCCCcEEE-EecCeEEECCCCCCCCCC
Confidence            7643      4433 22  221566556 899999999999986543

>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.86  E-value=4e-08  Score=102.14  Aligned_cols=154  Identities=19%  Similarity=0.323  Sum_probs=83.3

Q ss_pred             CCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCC-CCCCCCCccccccc------------------------CHH
Q psy9141           5 SKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIR-NSGLSEGKSINLAL------------------------SVR   59 (379)
Q Consensus         5 ~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~-~~~~~~g~~i~~al------------------------~~~   59 (379)
                      .++||+|||||.|||++|+.+++.|.+|+|+||...+. ..+...+.++..+.                        .+.
T Consensus        34 ~~~DVlVVG~G~AGl~AAi~Aae~G~~VilieK~~~~~~g~s~~a~GGi~a~~~~~~~~Ds~~~~~~d~~~~g~~~~d~~  113 (640)
T PRK07573         34 RKFDVIVVGTGLAGASAAATLGELGYNVKVFCYQDSPRRAHSIAAQGGINAAKNYQNDGDSVYRLFYDTVKGGDFRAREA  113 (640)
T ss_pred             cccCEEEECccHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhchHhHhhccccCCCHHHHHHHHHHhcCCCCCHH
Confidence            35799999999999999999999999999999865442 11111111221000                        011


Q ss_pred             HHHHHHHC--CChHHHHhCCCCceee---EE--EecCCcE-EEeeCC-CCCcH----------HHHhcCCCCeEEeCceE
Q psy9141          60 GREALRRI--GLEDKLLAHGIPMRAR---MI--HGQNGKL-REIPYD-PVHNQ----------VELEQYPDCNIYFQHKL  120 (379)
Q Consensus        60 ~~~~l~~l--Gl~~~l~~~~~~~~~~---~~--~~~~g~~-~~~~~~-~~~~~----------~~~~~~~gv~i~~~~~v  120 (379)
                      ..+.|-.-  ...+.+.+.+.++...   .+  ....+.. .+..+. ...+.          ....+..+++|++++.+
T Consensus       114 lv~~l~~~s~~~i~wL~~~GV~f~~~~~g~~~~~~~gghs~~R~~~~~~~tG~~i~~~l~~~L~~~~~~~gV~i~~~t~v  193 (640)
T PRK07573        114 NVYRLAEVSVNIIDQCVAQGVPFAREYGGLLANRSFGGAQVSRTFYARGQTGQQLLLGAYQALSRQIAAGTVKMYTRTEM  193 (640)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCccccCCCCceeccccCCcccceeEeCCCCCchhHHHHHHHHHHHHHHhcCCEEEeceEE
Confidence            11111111  1122333334443210   00  0001111 011111 00111          11223478999999999


Q ss_pred             EEEEecCCeEE-EEEc--cCCceeEEEeecEEEecCCCChHH
Q psy9141         121 INLDVNSGNVT-FYRT--EDNSETKITDNQLIIGADGAYSGV  159 (379)
Q Consensus       121 ~~i~~~~~~v~-v~~~--~~G~~~~~i~adlVV~AdG~~S~v  159 (379)
                      +++..+++.+. +...  .+|+... +.|+.||.|+|.++.+
T Consensus       194 ~~Li~d~g~V~GV~~~~~~~g~~~~-i~AkaVVLATGG~g~~  234 (640)
T PRK07573        194 LDLVVVDGRARGIVARNLVTGEIER-HTADAVVLATGGYGNV  234 (640)
T ss_pred             EEEEEeCCEEEEEEEEECCCCcEEE-EECCEEEECCCCcccC
Confidence            99987666544 3221  1566555 8999999999998864

>TIGR00275 flavoprotein, HI0933 family

Probab=98.86  E-value=1.3e-08  Score=100.35  Aligned_cols=136  Identities=22%  Similarity=0.325  Sum_probs=78.0

Q ss_pred             EEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCC--CCCCcccccccCHHHHH--------------HHHHCCChH--
Q psy9141          10 VIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSG--LSEGKSINLALSVRGRE--------------ALRRIGLED--   71 (379)
Q Consensus        10 vIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~--~~~g~~i~~al~~~~~~--------------~l~~lGl~~--   71 (379)
                      +|||||++|+++|+.|++.|.+|+|+||.+.....-  ...|+. ++.-.....+              .+..++..+  
T Consensus         1 vIIGgG~aGl~aAi~aa~~G~~V~llEk~~~~G~k~~~sG~grc-n~tn~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~   79 (400)
T TIGR00275         1 IIIGGGAAGLMAAITAAREGLSVLLLEKNKKIGKKLLISGGGRC-NLTNSCPTPEFVAYYPRNGKFLRSALSRFSNKDLI   79 (400)
T ss_pred             CEEEEeHHHHHHHHHHHhcCCcEEEEecCccccccccccCCceE-EccCCCcchhHHHhcCCCcHHHHHHHHhCCHHHHH
Confidence            699999999999999999999999999998654211  111221 0000000111              122222111  


Q ss_pred             -HHHhCCCCceeeEEEecCCcEEEeeCCCCCcH-----HHHhcCCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEe
Q psy9141          72 -KLLAHGIPMRARMIHGQNGKLREIPYDPVHNQ-----VELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITD  145 (379)
Q Consensus        72 -~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-----~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~  145 (379)
                       -+...+.++.   . ...+.  .++.......     ....+..+++++++++|++++.+++.+.+++.  +.+   +.
T Consensus        80 ~~~~~~Gv~~~---~-~~~g~--~~p~~~~a~~v~~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~~v~~~--~~~---i~  148 (400)
T TIGR00275        80 DFFESLGLELK---V-EEDGR--VFPCSDSAADVLDALLNELKELGVEILTNSKVKSIKKDDNGFGVETS--GGE---YE  148 (400)
T ss_pred             HHHHHcCCeeE---E-ecCCE--eECCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEecCCeEEEEEC--CcE---EE
Confidence             1111222211   0 11222  1121111011     22233468999999999999887777777663  445   89


Q ss_pred             ecEEEecCCCCh
Q psy9141         146 NQLIIGADGAYS  157 (379)
Q Consensus       146 adlVV~AdG~~S  157 (379)
                      +|.||.|+|.+|
T Consensus       149 ad~VIlAtG~~s  160 (400)
T TIGR00275       149 ADKVILATGGLS  160 (400)
T ss_pred             cCEEEECCCCcc
Confidence            999999999987

The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.

>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.85  E-value=4.9e-08  Score=99.96  Aligned_cols=152  Identities=15%  Similarity=0.071  Sum_probs=81.9

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCC-CCCCCCCcccccccCH-HHH-----HHH------------
Q psy9141           4 NSKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIR-NSGLSEGKSINLALSV-RGR-----EAL------------   64 (379)
Q Consensus         4 m~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~-~~~~~~g~~i~~al~~-~~~-----~~l------------   64 (379)
                      +.++||+|||+|.|||++|+.+ +.|.+|+|+||.+... ..+...+.++...... .+.     .++            
T Consensus         5 ~~~~DVlVVG~G~AGl~AAi~A-~~G~~VilleK~~~~~gG~s~~a~gg~~~~~~~~d~~~~~~~d~~~~~~~~~d~~lv   83 (543)
T PRK06263          5 IMITDVLIIGSGGAGARAAIEA-ERGKNVVIVSKGLFGKSGCTVMAEGGYNAVLNPEDSFEKHFEDTMKGGAYLNDPKLV   83 (543)
T ss_pred             eeccCEEEECccHHHHHHHHHH-hcCCCEEEEEccCCCCCccccccCceEEEeCCCCCCHHHHHHHHHHHhcCCCCHHHH
Confidence            3468999999999999999999 8999999999986422 1222222222111110 000     001            


Q ss_pred             HHC-----CChHHHHhCCCCcee-----eEEEecCCcEE-EeeC-CCCCcH------HHHhcCCCCeEEeCceEEEEEec
Q psy9141          65 RRI-----GLEDKLLAHGIPMRA-----RMIHGQNGKLR-EIPY-DPVHNQ------VELEQYPDCNIYFQHKLINLDVN  126 (379)
Q Consensus        65 ~~l-----Gl~~~l~~~~~~~~~-----~~~~~~~g~~~-~~~~-~~~~~~------~~~~~~~gv~i~~~~~v~~i~~~  126 (379)
                      +.+     ...+.+...+.++..     .......+... +..+ ....+.      .......++++++++.++++..+
T Consensus        84 ~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~~g~~~~r~~~~~~~~G~~i~~~L~~~~~~~gv~i~~~t~v~~Li~~  163 (543)
T PRK06263         84 EILVKEAPKRLKDLEKFGALFDRTEDGEIAQRPFGGQSFNRTCYAGDRTGHEMMMGLMEYLIKERIKILEEVMAIKLIVD  163 (543)
T ss_pred             HHHHHHHHHHHHHHHHcCCcceeCCCCceeecccCCeEcCeEEECCCCCHHHHHHHHHHHHhcCCCEEEeCeEeeeeEEe
Confidence            000     011222333333321     00000111110 1101 111111      12223379999999999998876


Q ss_pred             CCe-EE---EEE-ccCCceeEEEeecEEEecCCCChH
Q psy9141         127 SGN-VT---FYR-TEDNSETKITDNQLIIGADGAYSG  158 (379)
Q Consensus       127 ~~~-v~---v~~-~~~G~~~~~i~adlVV~AdG~~S~  158 (379)
                      +++ +.   +.. . +|+..+ +.|+.||.|+|.++.
T Consensus       164 ~~~~v~Gv~~~~~~-~g~~~~-i~AkaVIlATGG~~~  198 (543)
T PRK06263        164 ENREVIGAIFLDLR-NGEIFP-IYAKATILATGGAGQ  198 (543)
T ss_pred             CCcEEEEEEEEECC-CCcEEE-EEcCcEEECCCCCCC
Confidence            554 43   222 4 676556 999999999999874

>PRK06854 adenylylsulfate reductase subunit alpha; Validated

Probab=98.85  E-value=6.1e-08  Score=100.34  Aligned_cols=147  Identities=18%  Similarity=0.217  Sum_probs=80.3

Q ss_pred             CCcEEEECCChHHHHHHHHHHhC--CCcEEEEccCCCCCCCCCCCCc-ccccccCHH-HH-----HHHHHC-C-------
Q psy9141           6 KKSVVIVGGGLVGSLSACMFAKN--QYEVNLYEAREDIRNSGLSEGK-SINLALSVR-GR-----EALRRI-G-------   68 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La~~--G~~V~viE~~~~~~~~~~~~g~-~i~~al~~~-~~-----~~l~~l-G-------   68 (379)
                      ++||+|||||+|||++|+.+++.  |.+|+||||.+.........|- +++..+... +.     .+++.. +       
T Consensus        11 ~~DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK~~~~~s~~~a~G~~~~~~~~~~~ds~e~~~~d~~~~~~~~~d~~lv   90 (608)
T PRK06854         11 DTDILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKANIKRSGAVAQGLSAINAYIGEGETPEDYVRYVRKDLMGIVREDLV   90 (608)
T ss_pred             EeCEEEECcCHHHHHHHHHHHHhCCCCeEEEEECCCcCCCcccccCccccccccccCCCHHHHHHHHHHhccCCCCHHHH
Confidence            58999999999999999999998  9999999998754322111110 111111110 00     011110 0       


Q ss_pred             ---------ChHHHHhCCCCceeeEEEecCCcEEEe--eCCCCCcH-------HHHhcCCCCeEEeCceEEEEEecCCeE
Q psy9141          69 ---------LEDKLLAHGIPMRARMIHGQNGKLREI--PYDPVHNQ-------VELEQYPDCNIYFQHKLINLDVNSGNV  130 (379)
Q Consensus        69 ---------l~~~l~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~-------~~~~~~~gv~i~~~~~v~~i~~~~~~v  130 (379)
                               ..+.+...+.++..    ..+|.....  ......+.       ..+.+..+++++.++.|+++..+++.+
T Consensus        91 ~~~~~~s~~~i~~L~~~Gv~f~~----~~~G~~~~~g~~~~~~~G~~~~~~L~~~a~~~ggV~i~~~~~v~~Li~~~g~v  166 (608)
T PRK06854         91 YDIARHVDSVVHLFEEWGLPIWK----DENGKYVRRGRWQIMINGESYKPIVAEAAKKALGDNVLNRVFITDLLVDDNRI  166 (608)
T ss_pred             HHHHHhHHHHHHHHHHcCCeeee----cCCCCccccCCccCCCChHHHHHHHHHHHHhcCCCEEEeCCEEEEEEEeCCEE
Confidence                     01122222332210    111211100  00001111       223333459999999999988666644


Q ss_pred             E---E-EEccCCceeEEEeecEEEecCCCChH
Q psy9141         131 T---F-YRTEDNSETKITDNQLIIGADGAYSG  158 (379)
Q Consensus       131 ~---v-~~~~~G~~~~~i~adlVV~AdG~~S~  158 (379)
                      .   + ... +|+..+ +.|+.||.|+|.++.
T Consensus       167 ~Gv~~~~~~-~g~~~~-i~AkaVILATGG~~~  196 (608)
T PRK06854        167 AGAVGFSVR-ENKFYV-FKAKAVIVATGGAAG  196 (608)
T ss_pred             EEEEEEEcc-CCcEEE-EECCEEEECCCchhh
Confidence            3   2 233 565445 899999999999874

>PRK08401 L-aspartate oxidase; Provisional

Probab=98.84  E-value=5.3e-08  Score=97.81  Aligned_cols=147  Identities=20%  Similarity=0.175  Sum_probs=79.5

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCH-HH-----HHHHHHC-C-----------
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSV-RG-----REALRRI-G-----------   68 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~-~~-----~~~l~~l-G-----------   68 (379)
                      +||+|||||+|||++|+.+++.|.+|+|+||.+..... .....++...+.+ .+     ...++.- +           
T Consensus         2 ~DVvVVGaG~AGl~AAi~aae~G~~V~liek~~~~~~s-~~a~ggi~~~~~~~ds~e~~~~d~~~~~~~~~d~~~v~~~~   80 (466)
T PRK08401          2 MKVGIVGGGLAGLTAAISLAKKGFDVTIIGPGIKKSNS-YLAQAGIAFPILEGDSIRAHVLDTIRAGKYINDEEVVWNVI   80 (466)
T ss_pred             CeEEEECccHHHHHHHHHHHHCCCeEEEEeCCCCCCCc-HHHcCCcccccCCCCcHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence            49999999999999999999999999999998643221 1111122111100 00     0111100 0           


Q ss_pred             -----ChHHHHhCCCCceeeEEEecCCcEE--EeeCCCCCcH------HHHhcCCCCeEEeCceEEEEEecCCeEEEEEc
Q psy9141          69 -----LEDKLLAHGIPMRARMIHGQNGKLR--EIPYDPVHNQ------VELEQYPDCNIYFQHKLINLDVNSGNVTFYRT  135 (379)
Q Consensus        69 -----l~~~l~~~~~~~~~~~~~~~~g~~~--~~~~~~~~~~------~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~  135 (379)
                           ..+.+.+.+.++....  ...+...  ........+.      ....+..+++++.+ .++++..+++.+.....
T Consensus        81 ~~~~~~i~~L~~~Gv~f~~~~--~~~g~~~~r~~~~~~~~G~~i~~~L~~~~~~~gv~i~~~-~v~~l~~~~g~v~Gv~~  157 (466)
T PRK08401         81 SKSSEAYDFLTSLGLEFEGNE--LEGGHSFPRVFTIKNETGKHIIKILYKHARELGVNFIRG-FAEELAIKNGKAYGVFL  157 (466)
T ss_pred             HHHHHHHHHHHHcCCCcccCC--CcCCccCCeEEECCCCchHHHHHHHHHHHHhcCCEEEEe-EeEEEEeeCCEEEEEEE
Confidence                 1112222333332110  0111111  1111111111      22233468999876 78888766666653333


Q ss_pred             cCCceeEEEeecEEEecCCCChHHHH
Q psy9141         136 EDNSETKITDNQLIIGADGAYSGVRK  161 (379)
Q Consensus       136 ~~G~~~~~i~adlVV~AdG~~S~vr~  161 (379)
                       +|+.   +.++.||.|+|.+|....
T Consensus       158 -~g~~---i~a~~VVLATGG~~~~~~  179 (466)
T PRK08401        158 -DGEL---LKFDATVIATGGFSGLFK  179 (466)
T ss_pred             -CCEE---EEeCeEEECCCcCcCCCC
Confidence             5665   899999999999997643

>PRK12834 putative FAD-binding dehydrogenase; Reviewed

Probab=98.84  E-value=5.7e-08  Score=99.61  Aligned_cols=35  Identities=29%  Similarity=0.462  Sum_probs=33.6

Q ss_pred             CCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCC
Q psy9141           5 SKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEARE   39 (379)
Q Consensus         5 ~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~   39 (379)
                      .++||+|||+|.+||++|+.+++.|.+|+||||.+
T Consensus         3 ~~~DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~~   37 (549)
T PRK12834          3 MDADVIVVGAGLAGLVAAAELADAGKRVLLLDQEN   37 (549)
T ss_pred             ccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            46899999999999999999999999999999998

>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit

Probab=98.83  E-value=7.4e-08  Score=99.95  Aligned_cols=153  Identities=16%  Similarity=0.179  Sum_probs=84.1

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccC---HHHH--------------------H
Q psy9141           6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALS---VRGR--------------------E   62 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~---~~~~--------------------~   62 (379)
                      ++||+|||+|.|||++|+.+++.|.+|+|+||.......+...+.++..++.   ..+.                    +
T Consensus        50 ~~DVlVIG~G~AGl~AAl~Aae~G~~VilveK~~~~~g~s~~a~Ggi~a~~~~~~~Ds~e~~~~Dt~~~g~~~~d~~lv~  129 (635)
T PLN00128         50 TYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIQ  129 (635)
T ss_pred             ecCEEEECccHHHHHHHHHHHhcCCcEEEEEcCCCCCCchHHhhcCceeecCCCCCCCHHHHHHHHHHhhCCCCCHHHHH
Confidence            5799999999999999999999999999999987554332222222221111   1111                    1


Q ss_pred             HHHH-C-CChHHHHhCCCCceee---EEE--ecCCc---------EEEeeCCC-CCcH------HHHhcCCCCeEEeCce
Q psy9141          63 ALRR-I-GLEDKLLAHGIPMRAR---MIH--GQNGK---------LREIPYDP-VHNQ------VELEQYPDCNIYFQHK  119 (379)
Q Consensus        63 ~l~~-l-Gl~~~l~~~~~~~~~~---~~~--~~~g~---------~~~~~~~~-~~~~------~~~~~~~gv~i~~~~~  119 (379)
                      .|-+ . ...+.+...+.++...   .+.  ...+.         ..+..+.. ..+.      .......+++|+.++.
T Consensus       130 ~l~~~s~~~i~~L~~~Gv~F~~~~~g~~~~~~~gg~s~~~~~~g~~~r~~~~~d~tG~~i~~~L~~~a~~~gv~i~~~~~  209 (635)
T PLN00128        130 YMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLDFGKGGQAYRCACAADRTGHAMLHTLYGQAMKHNTQFFVEYF  209 (635)
T ss_pred             HHHHhHHHHHHHHHhCCCccccCCCCceeeccccccccccCCCcceeeeeccCCCCHHHHHHHHHHHHHhCCCEEEEeeE
Confidence            1100 0 0122333334444210   000  00111         01111111 1121      1222335899999999


Q ss_pred             EEEEEec-CCeEE---EEEccCCceeEEEeecEEEecCCCChHH
Q psy9141         120 LINLDVN-SGNVT---FYRTEDNSETKITDNQLIIGADGAYSGV  159 (379)
Q Consensus       120 v~~i~~~-~~~v~---v~~~~~G~~~~~i~adlVV~AdG~~S~v  159 (379)
                      ++++..+ ++.+.   +....+|+... +.|+.||.|+|.++..
T Consensus       210 ~~~Li~~~~g~v~Gv~~~~~~~g~~~~-i~AkaVILATGG~g~~  252 (635)
T PLN00128        210 ALDLIMDSDGACQGVIALNMEDGTLHR-FRAHSTILATGGYGRA  252 (635)
T ss_pred             EEEEEEcCCCEEEEEEEEEcCCCeEEE-EEcCeEEECCCCCccc
Confidence            9997765 44433   22211677666 8999999999999853

>PRK07121 hypothetical protein; Validated

Probab=98.83  E-value=6.8e-08  Score=97.80  Aligned_cols=38  Identities=26%  Similarity=0.247  Sum_probs=35.1

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCC
Q psy9141           6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRN   43 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~   43 (379)
                      ++||||||+|.+|+++|+.+++.|.+|+|+||.+....
T Consensus        20 ~~DVvVVGaG~AGl~AA~~aae~G~~VillEK~~~~gG   57 (492)
T PRK07121         20 EADVVVVGFGAAGACAAIEAAAAGARVLVLERAAGAGG   57 (492)
T ss_pred             ccCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCC
Confidence            58999999999999999999999999999999986543

>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.83  E-value=1.4e-07  Score=97.29  Aligned_cols=38  Identities=29%  Similarity=0.296  Sum_probs=34.2

Q ss_pred             CCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCC
Q psy9141           5 SKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIR   42 (379)
Q Consensus         5 ~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~   42 (379)
                      .++||+|||+|.|||++|+.+++.|.+|+||||.....
T Consensus        11 ~~~DVlVIG~G~AGl~AAi~Aa~~G~~V~vleK~~~~~   48 (591)
T PRK07057         11 RKFDVVIVGAGGSGMRASLQLARAGLSVAVLSKVFPTR   48 (591)
T ss_pred             ccCCEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCC
Confidence            35799999999999999999999999999999986443

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=98.82  E-value=5.3e-08  Score=99.14  Aligned_cols=112  Identities=21%  Similarity=0.339  Sum_probs=74.4

Q ss_pred             CCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeE
Q psy9141           5 SKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARM   84 (379)
Q Consensus         5 ~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~   84 (379)
                      .++||+||||||+|+++|..|++.|++|+|+|+.  .       |..+   ..        ..+++. +  .+.+     
T Consensus       210 ~~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~~--~-------GG~~---~~--------~~~~~~-~--~~~~-----  261 (517)
T PRK15317        210 DPYDVLVVGGGPAGAAAAIYAARKGIRTGIVAER--F-------GGQV---LD--------TMGIEN-F--ISVP-----  261 (517)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecC--C-------CCee---ec--------cCcccc-c--CCCC-----
Confidence            3689999999999999999999999999999753  1       2111   00        001100 0  0000     


Q ss_pred             EEecCCcEEEeeCCCCCcH-HHHhcCCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEEEecCCCCh
Q psy9141          85 IHGQNGKLREIPYDPVHNQ-VELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAYS  157 (379)
Q Consensus        85 ~~~~~g~~~~~~~~~~~~~-~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlVV~AdG~~S  157 (379)
                        ...+.       ..... ....+..+++++.+++|++++..++.+++.+. +|++   +.+|.||.|+|..+
T Consensus       262 --~~~~~-------~l~~~l~~~~~~~gv~i~~~~~V~~I~~~~~~~~V~~~-~g~~---i~a~~vViAtG~~~  322 (517)
T PRK15317        262 --ETEGP-------KLAAALEEHVKEYDVDIMNLQRASKLEPAAGLIEVELA-NGAV---LKAKTVILATGARW  322 (517)
T ss_pred             --CCCHH-------HHHHHHHHHHHHCCCEEEcCCEEEEEEecCCeEEEEEC-CCCE---EEcCEEEECCCCCc
Confidence              00000       00000 22222347999999999999988788888887 8876   99999999999976

>PRK07395 L-aspartate oxidase; Provisional

Probab=98.81  E-value=7.2e-08  Score=98.66  Aligned_cols=151  Identities=17%  Similarity=0.176  Sum_probs=82.1

Q ss_pred             CCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCH-HH-H----HHHHHC-C---------
Q psy9141           5 SKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSV-RG-R----EALRRI-G---------   68 (379)
Q Consensus         5 ~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~-~~-~----~~l~~l-G---------   68 (379)
                      .++||+|||+|.||+++|+.+++ |.+|+|+||.+.....+...+.++..++.+ .+ .    .+++.- +         
T Consensus         8 ~e~DVlVVG~G~AGl~AAi~A~~-G~~V~lieK~~~~gg~s~~a~Ggi~a~~~~~ds~e~~~~d~~~~g~~~~d~~lv~~   86 (553)
T PRK07395          8 SQFDVLVVGSGAAGLYAALCLPS-HLRVGLITKDTLKTSASDWAQGGIAAAIAPDDSPKLHYEDTLKAGAGLCDPEAVRF   86 (553)
T ss_pred             ccCCEEEECccHHHHHHHHHhhc-CCCEEEEEccCCCCCchhhhcccceecccCCCCHHHHHHHHHHhcCCCCCHHHHHH
Confidence            46899999999999999999974 999999999976543322222233211111 00 0    011100 0         


Q ss_pred             -------ChHHHHhCCCCceee----EEEecCCcE--EEeeCCCCCcH-------HHHhcCCCCeEEeCceEEEEEecC-
Q psy9141          69 -------LEDKLLAHGIPMRAR----MIHGQNGKL--REIPYDPVHNQ-------VELEQYPDCNIYFQHKLINLDVNS-  127 (379)
Q Consensus        69 -------l~~~l~~~~~~~~~~----~~~~~~g~~--~~~~~~~~~~~-------~~~~~~~gv~i~~~~~v~~i~~~~-  127 (379)
                             ..+.+.+.+.++...    ......+..  .........+.       ..+.+.++++|++++.++++..++ 
T Consensus        87 ~~~~s~~~i~wL~~~Gv~f~~~~~~~~~~~~~g~s~~r~~~~~d~~G~~i~~~L~~~~~~~~gi~i~~~~~v~~Li~~~~  166 (553)
T PRK07395         87 LVEQAPEAIASLVEMGVAFDRHGQHLALTLEAAHSRPRVLHAADTTGRAIVTTLTEQVLQRPNIEIISQALALSLWLEPE  166 (553)
T ss_pred             HHHHHHHHHHHHHhcCCeeecCCCceeeecccccccCeEEEeCCCChHHHHHHHHHHHhhcCCcEEEECcChhhheecCC
Confidence                   112233333333210    000001111  11111111122       233345699999999999987653 


Q ss_pred             -CeEE-EE-EccCCceeEEEeecEEEecCCCChH
Q psy9141         128 -GNVT-FY-RTEDNSETKITDNQLIIGADGAYSG  158 (379)
Q Consensus       128 -~~v~-v~-~~~~G~~~~~i~adlVV~AdG~~S~  158 (379)
                       +.+. +. .. +|.... +.|+-||.|+|.++.
T Consensus       167 ~g~v~Gv~~~~-~g~~~~-i~AkaVILATGG~~~  198 (553)
T PRK07395        167 TGRCQGISLLY-QGQITW-LRAGAVILATGGGGQ  198 (553)
T ss_pred             CCEEEEEEEEE-CCeEEE-EEcCEEEEcCCCCcc
Confidence             4333 22 23 676555 899999999999753

>PRK08626 fumarate reductase flavoprotein subunit; Provisional

Probab=98.80  E-value=6.3e-08  Score=100.94  Aligned_cols=39  Identities=18%  Similarity=0.199  Sum_probs=35.4

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCC
Q psy9141           4 NSKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIR   42 (379)
Q Consensus         4 m~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~   42 (379)
                      ..++||+|||||.|||++|+.+++.|.+|+|+||.+...
T Consensus         3 ~~~~DVlVIG~G~AGl~AAi~Aae~G~~VivleK~~~~~   41 (657)
T PRK08626          3 IIYTDALVIGAGLAGLRVAIAAAQRGLDTIVLSLVPAKR   41 (657)
T ss_pred             ceeccEEEECccHHHHHHHHHHHHcCCCEEEEeCCCCCC
Confidence            346899999999999999999999999999999987654

>PRK06115 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.80  E-value=1.8e-08  Score=101.26  Aligned_cols=38  Identities=29%  Similarity=0.327  Sum_probs=33.9

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCC
Q psy9141           4 NSKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDI   41 (379)
Q Consensus         4 m~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~   41 (379)
                      |++|||+||||||+|+.+|..+++.|.+|+|||+....
T Consensus         1 m~~~DvvVIG~GpaG~~AA~~aa~~G~~V~liE~~~~~   38 (466)
T PRK06115          1 MASYDVVIIGGGPGGYNAAIRAGQLGLKVACVEGRSTL   38 (466)
T ss_pred             CCcccEEEECCCHHHHHHHHHHHhCCCeEEEEecCCce
Confidence            34699999999999999999999999999999975433

>PRK07512 L-aspartate oxidase; Provisional

Probab=98.80  E-value=5.4e-08  Score=98.88  Aligned_cols=34  Identities=32%  Similarity=0.372  Sum_probs=30.9

Q ss_pred             CCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCC
Q psy9141           5 SKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEARED   40 (379)
Q Consensus         5 ~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~   40 (379)
                      .++||+|||+|.|||++|+.++  +.+|+|+||.+.
T Consensus         8 ~~~DVlVIG~G~AGl~AAl~Aa--~~~V~lleK~~~   41 (513)
T PRK07512          8 LTGRPVIVGGGLAGLMAALKLA--PRPVVVLSPAPL   41 (513)
T ss_pred             CcCCEEEECchHHHHHHHHHhC--cCCEEEEECCCC
Confidence            3689999999999999999997  569999999986

>PLN02815 L-aspartate oxidase

Probab=98.80  E-value=7.7e-08  Score=99.00  Aligned_cols=151  Identities=14%  Similarity=0.164  Sum_probs=82.8

Q ss_pred             CCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccC---------------------HHHHHH
Q psy9141           5 SKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALS---------------------VRGREA   63 (379)
Q Consensus         5 ~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~---------------------~~~~~~   63 (379)
                      .++||+|||+|.|||++|+.+++.| +|+|+||.+.....+...+.++...+.                     +...+.
T Consensus        28 ~~~DVlVVG~G~AGl~AAl~Aae~G-~VvlleK~~~~gg~s~~a~Ggi~a~~~~~Ds~e~~~~d~~~~g~~~~d~~lv~~  106 (594)
T PLN02815         28 KYFDFLVIGSGIAGLRYALEVAEYG-TVAIITKDEPHESNTNYAQGGVSAVLDPSDSVESHMRDTIVAGAFLCDEETVRV  106 (594)
T ss_pred             cccCEEEECccHHHHHHHHHHhhCC-CEEEEECCCCCCCcHHHhhcccccCCCCCCCHHHHHHHHHHhccCCCcHHHHHH
Confidence            3589999999999999999999999 999999998654432222222221111                     111111


Q ss_pred             HHHCC--ChHHHHhCCCCceee-----EEEecCCcEE-EeeC-CCCCcH-------HHHhcCCCCeEEeCceEEEEEecC
Q psy9141          64 LRRIG--LEDKLLAHGIPMRAR-----MIHGQNGKLR-EIPY-DPVHNQ-------VELEQYPDCNIYFQHKLINLDVNS  127 (379)
Q Consensus        64 l~~lG--l~~~l~~~~~~~~~~-----~~~~~~g~~~-~~~~-~~~~~~-------~~~~~~~gv~i~~~~~v~~i~~~~  127 (379)
                      |-+-+  ..+.+...+.++...     ......+... +..+ ....+.       ..+.+.++++|+.++.++++..++
T Consensus       107 ~~~~s~e~i~~L~~~Gv~F~~~~~g~~~~~~~gg~s~~R~~~~~d~tG~~i~~~L~~~~~~~~~i~i~~~~~~~~Li~~~  186 (594)
T PLN02815        107 VCTEGPERVKELIAMGASFDHGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVKNDPNITFFEHHFAIDLLTSQ  186 (594)
T ss_pred             HHHHHHHHHHHHHHhCCeeeecCCCCccccCCCCCccCceeecCCCCHHHHHHHHHHHHHhcCCCEEEeceEhheeeeec
Confidence            10000  112222233333210     0001111110 1101 111121       233445689999999999988653


Q ss_pred             -Ce---EE-EE---EccCCceeEEEeecEEEecCCCChH
Q psy9141         128 -GN---VT-FY---RTEDNSETKITDNQLIIGADGAYSG  158 (379)
Q Consensus       128 -~~---v~-v~---~~~~G~~~~~i~adlVV~AdG~~S~  158 (379)
                       ++   +. +.   .. +|+... +.|+-||.|+|.++.
T Consensus       187 ~g~~~~v~Gv~~~~~~-~g~~~~-i~AkaVILATGG~g~  223 (594)
T PLN02815        187 DGGSIVCHGADVLDTR-TGEVVR-FISKVTLLASGGAGH  223 (594)
T ss_pred             CCCccEEEEEEEEEcC-CCeEEE-EEeceEEEcCCccee
Confidence             31   22 22   23 676556 899999999999875

>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]

Probab=98.80  E-value=6.2e-08  Score=95.29  Aligned_cols=67  Identities=30%  Similarity=0.473  Sum_probs=48.9

Q ss_pred             cEEEECCChHHHHHHHHHHhCC--CcEEEEccCCCCCCC---CCCCCccc-----ccccC-HHHHHHHHHCCChHHHH
Q psy9141           8 SVVIVGGGLVGSLSACMFAKNQ--YEVNLYEAREDIRNS---GLSEGKSI-----NLALS-VRGREALRRIGLEDKLL   74 (379)
Q Consensus         8 dVvIVGaGpaGl~~A~~La~~G--~~V~viE~~~~~~~~---~~~~g~~i-----~~al~-~~~~~~l~~lGl~~~l~   74 (379)
                      .|+|||||++||++|+.|++++  .+|+|+|+++.....   -..+|-.+     +.... +...+.++++|+.+.+.
T Consensus         2 ~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~GG~l~T~~~~G~~~e~G~~~f~~~~~~~l~li~eLGled~l~   79 (444)
T COG1232           2 KIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVGGLLRTVKIDGFLFERGPHHFLARKEEILDLIKELGLEDKLL   79 (444)
T ss_pred             eEEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCCCCceEEEEeeCCEEEeechhheecchHHHHHHHHHhCcHHhhc
Confidence            5999999999999999999999  999999998755321   01112111     01122 66788899999988776

>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=98.79  E-value=1.4e-07  Score=94.14  Aligned_cols=48  Identities=8%  Similarity=0.121  Sum_probs=39.1

Q ss_pred             cCCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEEEecCCCChHHH
Q psy9141         108 QYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAYSGVR  160 (379)
Q Consensus       108 ~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlVV~AdG~~S~vr  160 (379)
                      +..|+++++++++++++.+++.+++... +| +   +.+|.||.|.|+.+.+.
T Consensus       210 ~~~gV~v~~~~~v~~i~~~~~~v~v~~~-~g-~---i~~D~vl~a~G~~pn~~  257 (441)
T PRK08010        210 RDQGVDIILNAHVERISHHENQVQVHSE-HA-Q---LAVDALLIASGRQPATA  257 (441)
T ss_pred             HhCCCEEEeCCEEEEEEEcCCEEEEEEc-CC-e---EEeCEEEEeecCCcCCC
Confidence            3468999999999999887777777665 55 3   88999999999988653

>PRK06370 mercuric reductase; Validated

Probab=98.79  E-value=1e-07  Score=95.71  Aligned_cols=36  Identities=22%  Similarity=0.261  Sum_probs=34.2

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCC
Q psy9141           4 NSKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEARE   39 (379)
Q Consensus         4 m~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~   39 (379)
                      |.+|||+||||||+|+++|+.|++.|++|+|+|+..
T Consensus         3 ~~~~DvvVIG~GpaG~~aA~~aa~~G~~v~lie~~~   38 (463)
T PRK06370          3 AQRYDAIVIGAGQAGPPLAARAAGLGMKVALIERGL   38 (463)
T ss_pred             CccccEEEECCCHHHHHHHHHHHhCCCeEEEEecCc
Confidence            678999999999999999999999999999999875

>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.79  E-value=8.7e-08  Score=98.84  Aligned_cols=37  Identities=24%  Similarity=0.214  Sum_probs=33.1

Q ss_pred             CCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCC
Q psy9141           5 SKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIR   42 (379)
Q Consensus         5 ~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~   42 (379)
                      .++||+|||||+|||++|+.+++. .+|+|+||.+...
T Consensus         4 ~~~DVlVIG~G~AGl~AAl~aa~~-~~VilleK~~~~~   40 (583)
T PRK08205          4 HRYDVVIVGAGGAGMRAAIEAGPR-ARTAVLTKLYPTR   40 (583)
T ss_pred             eeccEEEECccHHHHHHHHHHHhC-CCEEEEeCCCCCC
Confidence            468999999999999999999987 8999999987544

>KOG1399|consensus

Probab=98.78  E-value=2.7e-08  Score=98.19  Aligned_cols=137  Identities=16%  Similarity=0.182  Sum_probs=80.2

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCC--ChHHHHhCCCCce
Q psy9141           4 NSKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIG--LEDKLLAHGIPMR   81 (379)
Q Consensus         4 m~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lG--l~~~l~~~~~~~~   81 (379)
                      |...+|+||||||+||++|..|.+.|++|+++||.+.++....+....-   .-+.  .+.+++-  +..++.    ...
T Consensus         4 ~~~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGGlW~y~~~~~---~~~s--s~Y~~l~tn~pKe~~----~~~   74 (448)
T KOG1399|consen    4 MMSKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGGLWKYTENVE---VVHS--SVYKSLRTNLPKEMM----GYS   74 (448)
T ss_pred             CCCCceEEECcchHHHHHHHHHHHCCCCceEEEecCCccceEeecCccc---cccc--chhhhhhccCChhhh----cCC
Confidence            4457999999999999999999999999999999998764322221100   0000  1111111  111111    001


Q ss_pred             eeEEEecCCcEEEeeCCCCCc-H-----HHHhcCCC--CeEEeCceEEEEEecC-CeEEEEEccCCc--eeEEEeecEEE
Q psy9141          82 ARMIHGQNGKLREIPYDPVHN-Q-----VELEQYPD--CNIYFQHKLINLDVNS-GNVTFYRTEDNS--ETKITDNQLII  150 (379)
Q Consensus        82 ~~~~~~~~g~~~~~~~~~~~~-~-----~~~~~~~g--v~i~~~~~v~~i~~~~-~~v~v~~~~~G~--~~~~i~adlVV  150 (379)
                      +.-+...      .+--.... +     ...++..+  ..|.++++|..++... +.|.|... ++.  ..+ ..+|.||
T Consensus        75 dfpf~~~------~~~~~p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~gkW~V~~~-~~~~~~~~-~ifd~Vv  146 (448)
T KOG1399|consen   75 DFPFPER------DPRYFPSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDKGKWRVTTK-DNGTQIEE-EIFDAVV  146 (448)
T ss_pred             CCCCccc------CcccCCCHHHHHHHHHHHHHhcChhhheEecccEEEEeeccCCceeEEEe-cCCcceeE-EEeeEEE
Confidence            0100000      00000101 1     22233333  4689999999999888 78998876 332  234 7899999


Q ss_pred             ecCCCCh
Q psy9141         151 GADGAYS  157 (379)
Q Consensus       151 ~AdG~~S  157 (379)
                      .|+|.+.
T Consensus       147 VctGh~~  153 (448)
T KOG1399|consen  147 VCTGHYV  153 (448)
T ss_pred             EcccCcC
Confidence            9999993

>PRK14694 putative mercuric reductase; Provisional

Probab=98.77  E-value=1.7e-08  Score=101.42  Aligned_cols=39  Identities=18%  Similarity=0.231  Sum_probs=35.8

Q ss_pred             CCCCCCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCC
Q psy9141           1 MKCNSKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEARE   39 (379)
Q Consensus         1 M~~m~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~   39 (379)
                      |++..+|||+||||||+|+++|..|++.|++|+|||+..
T Consensus         1 ~~~~~~~dviVIGaG~aG~~aA~~l~~~g~~v~lie~~~   39 (468)
T PRK14694          1 MMSDNNLHIAVIGSGGSAMAAALKATERGARVTLIERGT   39 (468)
T ss_pred             CCCCCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEEccc
Confidence            665678999999999999999999999999999999864

>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]

Probab=98.77  E-value=3.7e-08  Score=96.23  Aligned_cols=38  Identities=39%  Similarity=0.526  Sum_probs=34.9

Q ss_pred             CCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCC
Q psy9141           5 SKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIR   42 (379)
Q Consensus         5 ~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~   42 (379)
                      .++||+|||||++|+++|+.|++.|.+|+|+|+.....
T Consensus         3 ~~~~vvVIGgGi~Gls~A~~La~~G~~V~vie~~~~~~   40 (387)
T COG0665           3 MKMDVVIIGGGIVGLSAAYYLAERGADVTVLEAGEAGG   40 (387)
T ss_pred             CcceEEEECCcHHHHHHHHHHHHcCCEEEEEecCccCC
Confidence            46899999999999999999999999999999988654

>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=98.77  E-value=1.7e-07  Score=96.10  Aligned_cols=39  Identities=23%  Similarity=0.291  Sum_probs=35.6

Q ss_pred             CCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCC
Q psy9141           5 SKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRN   43 (379)
Q Consensus         5 ~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~   43 (379)
                      .++||+|||+|++|+++|+.+++.|.+|+||||.+....
T Consensus         6 ~~~DvvVvG~G~aG~~aA~~aa~~G~~v~llEk~~~~gG   44 (557)
T PRK07843          6 QEYDVVVVGSGAAGMVAALTAAHRGLSTVVVEKAPHYGG   44 (557)
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCc
Confidence            478999999999999999999999999999999876543

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=98.76  E-value=9e-08  Score=97.37  Aligned_cols=113  Identities=19%  Similarity=0.331  Sum_probs=73.7

Q ss_pred             CCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeE
Q psy9141           5 SKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARM   84 (379)
Q Consensus         5 ~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~   84 (379)
                      ..+||+||||||+|+++|..|++.|++|+|+|..  ..      |. +   ..        ..++ +.+.  +.+     
T Consensus       211 ~~~dVvIIGgGpAGl~AA~~la~~G~~v~li~~~--~G------G~-~---~~--------~~~~-~~~~--~~~-----  262 (515)
T TIGR03140       211 DPYDVLVVGGGPAGAAAAIYAARKGLRTAMVAER--IG------GQ-V---KD--------TVGI-ENLI--SVP-----  262 (515)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecC--CC------Cc-c---cc--------CcCc-cccc--ccC-----
Confidence            4689999999999999999999999999999743  11      11 0   00        0000 0000  000     


Q ss_pred             EEecCCcEEEeeCCCCCcHHHHhcCCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEEEecCCCCh
Q psy9141          85 IHGQNGKLREIPYDPVHNQVELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAYS  157 (379)
Q Consensus        85 ~~~~~g~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlVV~AdG~~S  157 (379)
                        ...+.    .+... -...+.. .+++++.+++|++++.+++.+.+.+. +|+.   +.+|.||.|+|...
T Consensus       263 --~~~~~----~l~~~-l~~~l~~-~gv~i~~~~~V~~I~~~~~~~~v~~~-~g~~---i~~d~lIlAtGa~~  323 (515)
T TIGR03140       263 --YTTGS----QLAAN-LEEHIKQ-YPIDLMENQRAKKIETEDGLIVVTLE-SGEV---LKAKSVIVATGARW  323 (515)
T ss_pred             --CCCHH----HHHHH-HHHHHHH-hCCeEEcCCEEEEEEecCCeEEEEEC-CCCE---EEeCEEEECCCCCc
Confidence              00000    00000 0022333 58999999999999888778888887 8876   99999999999874

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>KOG2820|consensus

Probab=98.76  E-value=8.8e-08  Score=88.81  Aligned_cols=41  Identities=29%  Similarity=0.384  Sum_probs=37.1

Q ss_pred             CCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCC
Q psy9141           5 SKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSG   45 (379)
Q Consensus         5 ~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~   45 (379)
                      +..||+|||||+-|+++|+.|+++|.++.++|+.+.+...+
T Consensus         6 ~~~~viiVGAGVfG~stAyeLaK~g~killLeqf~~ph~~G   46 (399)
T KOG2820|consen    6 KSRDVIIVGAGVFGLSTAYELAKRGDKILLLEQFPLPHSRG   46 (399)
T ss_pred             cceeEEEEcccccchHHHHHHHhcCCeEEEEeccCCCcccC
Confidence            45899999999999999999999999999999999876443

>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=98.75  E-value=1.9e-07  Score=93.08  Aligned_cols=37  Identities=22%  Similarity=0.260  Sum_probs=34.2

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCC
Q psy9141           4 NSKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEARED   40 (379)
Q Consensus         4 m~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~   40 (379)
                      |++|||+||||||+|+++|..|++.|++|+|+|+.+.
T Consensus         1 ~~~~dvvVIG~GpaG~~aA~~l~~~g~~V~liE~~~~   37 (438)
T PRK07251          1 MLTYDLIVIGFGKAGKTLAAKLASAGKKVALVEESKA   37 (438)
T ss_pred             CCccCEEEECCCHHHHHHHHHHHhCCCEEEEEecCCc
Confidence            4579999999999999999999999999999999863

>PRK06116 glutathione reductase; Validated

Probab=98.75  E-value=1.3e-07  Score=94.72  Aligned_cols=49  Identities=12%  Similarity=0.049  Sum_probs=41.0

Q ss_pred             cCCCCeEEeCceEEEEEecCCe-EEEEEccCCceeEEEeecEEEecCCCChHHH
Q psy9141         108 QYPDCNIYFQHKLINLDVNSGN-VTFYRTEDNSETKITDNQLIIGADGAYSGVR  160 (379)
Q Consensus       108 ~~~gv~i~~~~~v~~i~~~~~~-v~v~~~~~G~~~~~i~adlVV~AdG~~S~vr  160 (379)
                      +..|++++++++|++++.++++ +.+.+. +|++   +++|.||.|.|....+.
T Consensus       219 ~~~GV~i~~~~~V~~i~~~~~g~~~v~~~-~g~~---i~~D~Vv~a~G~~p~~~  268 (450)
T PRK06116        219 EKKGIRLHTNAVPKAVEKNADGSLTLTLE-DGET---LTVDCLIWAIGREPNTD  268 (450)
T ss_pred             HHCCcEEECCCEEEEEEEcCCceEEEEEc-CCcE---EEeCEEEEeeCCCcCCC
Confidence            3468999999999999876554 777777 8876   99999999999987655

>PRK07818 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.75  E-value=1.6e-07  Score=94.47  Aligned_cols=51  Identities=20%  Similarity=0.199  Sum_probs=39.5

Q ss_pred             CCCCeEEeCceEEEEEecCCeEEEEEc-cCCceeEEEeecEEEecCCCChHHH
Q psy9141         109 YPDCNIYFQHKLINLDVNSGNVTFYRT-EDNSETKITDNQLIIGADGAYSGVR  160 (379)
Q Consensus       109 ~~gv~i~~~~~v~~i~~~~~~v~v~~~-~~G~~~~~i~adlVV~AdG~~S~vr  160 (379)
                      ..|++++++++|++++.+++.+.+.+. .+|+..+ +++|.||.|.|+...+.
T Consensus       225 ~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~-i~~D~vi~a~G~~pn~~  276 (466)
T PRK07818        225 KLGVKILTGTKVESIDDNGSKVTVTVSKKDGKAQE-LEADKVLQAIGFAPRVE  276 (466)
T ss_pred             HCCCEEEECCEEEEEEEeCCeEEEEEEecCCCeEE-EEeCEEEECcCcccCCC
Confidence            469999999999999877666655442 1565345 99999999999987764

>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant

Probab=98.75  E-value=2.1e-07  Score=92.99  Aligned_cols=48  Identities=13%  Similarity=0.109  Sum_probs=40.9

Q ss_pred             CCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEEEecCCCChHHH
Q psy9141         109 YPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAYSGVR  160 (379)
Q Consensus       109 ~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlVV~AdG~~S~vr  160 (379)
                      ..|++++.+++|++++.+++++.+.+. +|++   +++|.||.|.|+...+.
T Consensus       219 ~~gV~i~~~~~v~~i~~~~~~~~v~~~-~g~~---i~~D~viva~G~~pn~~  266 (446)
T TIGR01424       219 GRGIRIHPQTSLTSITKTDDGLKVTLS-HGEE---IVADVVLFATGRSPNTK  266 (446)
T ss_pred             HCCCEEEeCCEEEEEEEcCCeEEEEEc-CCcE---eecCEEEEeeCCCcCCC
Confidence            468999999999999877777777777 7876   99999999999987654

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.

>TIGR02730 carot_isom carotene isomerase

Probab=98.74  E-value=8.6e-08  Score=97.06  Aligned_cols=53  Identities=11%  Similarity=0.179  Sum_probs=43.5

Q ss_pred             hcCCCCeEEeCceEEEEEecCCeE-EEEEccCCceeEEEeecEEEecCCCChHHHHHh
Q psy9141         107 EQYPDCNIYFQHKLINLDVNSGNV-TFYRTEDNSETKITDNQLIIGADGAYSGVRKCL  163 (379)
Q Consensus       107 ~~~~gv~i~~~~~v~~i~~~~~~v-~v~~~~~G~~~~~i~adlVV~AdG~~S~vr~~l  163 (379)
                      .+..|++|+++++|++|..+++++ .+++. +|++   ++||.||.|.|.+..+++.+
T Consensus       239 ~~~~G~~i~~~~~V~~I~~~~~~~~gv~~~-~g~~---~~ad~vV~a~~~~~~~~~Ll  292 (493)
T TIGR02730       239 LEKHGGQIRYRARVTKIILENGKAVGVKLA-DGEK---IYAKRIVSNATRWDTFGKLL  292 (493)
T ss_pred             HHHCCCEEEeCCeeeEEEecCCcEEEEEeC-CCCE---EEcCEEEECCChHHHHHHhC
Confidence            445689999999999998776644 46777 8877   99999999999998887765

Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.

>PRK06467 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.73  E-value=4.2e-08  Score=98.70  Aligned_cols=132  Identities=16%  Similarity=0.121  Sum_probs=75.3

Q ss_pred             CCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHH---hCCCCce
Q psy9141           5 SKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLL---AHGIPMR   81 (379)
Q Consensus         5 ~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~---~~~~~~~   81 (379)
                      .+|||+||||||+|+.+|..|++.|.+|+|+|+.+.....  +-.++   +++  +..++........+.   ..+....
T Consensus         3 ~~~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~~~GG~--c~n~g---ciP--~K~l~~~a~~~~~~~~~~~~g~~~~   75 (471)
T PRK06467          3 IKTQVVVLGAGPAGYSAAFRAADLGLETVCVERYSTLGGV--CLNVG---CIP--SKALLHVAKVIEEAKALAEHGIVFG   75 (471)
T ss_pred             ccceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCccccc--ccCCC---ccc--HHHHHHHHHHHHHHhhhhhcCcccC
Confidence            4699999999999999999999999999999987533321  11111   122  222232222222211   1111110


Q ss_pred             eeEEEecCCcEEEeeCCCCCc------------HHHHhcCCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEE
Q psy9141          82 ARMIHGQNGKLREIPYDPVHN------------QVELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLI  149 (379)
Q Consensus        82 ~~~~~~~~g~~~~~~~~~~~~------------~~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlV  149 (379)
                      .          ..+++.....            .....+..+++++.++. ..  .++..+.+... +|+..+ +++|.|
T Consensus        76 ~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~a-~~--~~~~~v~v~~~-~g~~~~-~~~d~l  140 (471)
T PRK06467         76 E----------PKIDIDKMRARKEKVVKQLTGGLAGMAKGRKVTVVNGLG-KF--TGGNTLEVTGE-DGKTTV-IEFDNA  140 (471)
T ss_pred             C----------CCcCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEE-EE--ccCCEEEEecC-CCceEE-EEcCEE
Confidence            0          0011111000            02233456899987742 22  34566777766 774344 999999


Q ss_pred             EecCCCChH
Q psy9141         150 IGADGAYSG  158 (379)
Q Consensus       150 V~AdG~~S~  158 (379)
                      |.|+|....
T Consensus       141 ViATGs~p~  149 (471)
T PRK06467        141 IIAAGSRPI  149 (471)
T ss_pred             EEeCCCCCC
Confidence            999998653

>PRK08275 putative oxidoreductase; Provisional

Probab=98.73  E-value=1.3e-07  Score=97.13  Aligned_cols=37  Identities=22%  Similarity=0.390  Sum_probs=33.5

Q ss_pred             CCCcEEEECCChHHHHHHHHHHhC--CCcEEEEccCCCC
Q psy9141           5 SKKSVVIVGGGLVGSLSACMFAKN--QYEVNLYEAREDI   41 (379)
Q Consensus         5 ~~~dVvIVGaGpaGl~~A~~La~~--G~~V~viE~~~~~   41 (379)
                      .++||+|||||.||+++|+.+++.  |.+|+|+||.+..
T Consensus         8 ~~~DVlVIG~G~AGl~AAi~aa~~g~g~~VilveK~~~~   46 (554)
T PRK08275          8 VETDILVIGGGTAGPMAAIKAKERNPALRVLLLEKANVK   46 (554)
T ss_pred             EecCEEEECcCHHHHHHHHHHHHhCCCCeEEEEeCCCCC
Confidence            458999999999999999999987  7899999999863

>TIGR00136 gidA glucose-inhibited division protein A

Probab=98.71  E-value=2e-07  Score=94.65  Aligned_cols=141  Identities=16%  Similarity=0.210  Sum_probs=78.7

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCH-HHHHHHHHCC-ChHHHHhC-CCCceee
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSV-RGREALRRIG-LEDKLLAH-GIPMRAR   83 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~-~~~~~l~~lG-l~~~l~~~-~~~~~~~   83 (379)
                      |||+|||||++|+.+|..+++.|.+|+|+|+.........+ ...+. .+.. .-.+-++.+| ....+... ...+   
T Consensus         1 yDViVIGaG~AGl~aA~ala~~G~~v~Lie~~~~~~g~~~c-~ps~g-G~a~g~l~rEidaLGG~~~~~~d~~~i~~---   75 (617)
T TIGR00136         1 FDVIVIGGGHAGCEAALAAARMGAKTLLLTLNLDTIGKCSC-NPAIG-GPAKGILVKEIDALGGLMGKAADKAGLQF---   75 (617)
T ss_pred             CeEEEECccHHHHHHHHHHHHCCCCEEEEecccccccCCCc-ccccc-ccccchhhhhhhcccchHHHHHHhhceeh---
Confidence            69999999999999999999999999999987532211011 11110 0111 1223344453 22222211 1111   


Q ss_pred             EEEecC-CcEEEeeCCCCCcH-------HHHhcCCCCeEEeCceEEEEEec-CCe-EEEEEccCCceeEEEeecEEEecC
Q psy9141          84 MIHGQN-GKLREIPYDPVHNQ-------VELEQYPDCNIYFQHKLINLDVN-SGN-VTFYRTEDNSETKITDNQLIIGAD  153 (379)
Q Consensus        84 ~~~~~~-g~~~~~~~~~~~~~-------~~~~~~~gv~i~~~~~v~~i~~~-~~~-v~v~~~~~G~~~~~i~adlVV~Ad  153 (379)
                      ...+.. +.....+.......       ..+.+.++++++.+ .|+++..+ ++. +.|.+. +|..   +.|+.||.|+
T Consensus        76 r~ln~skgpAV~~~RaQVDr~~y~~~L~e~Le~~pgV~Ile~-~Vv~li~e~~g~V~GV~t~-~G~~---I~Ad~VILAT  150 (617)
T TIGR00136        76 RVLNSSKGPAVRATRAQIDKVLYRKAMRNALENQPNLSLFQG-EVEDLILEDNDEIKGVVTQ-DGLK---FRAKAVIITT  150 (617)
T ss_pred             eecccCCCCcccccHHhCCHHHHHHHHHHHHHcCCCcEEEEe-EEEEEEEecCCcEEEEEEC-CCCE---EECCEEEEcc
Confidence            111111 11011110011010       34556678888765 67777654 444 446777 8876   9999999999


Q ss_pred             CCCh
Q psy9141         154 GAYS  157 (379)
Q Consensus       154 G~~S  157 (379)
                      |.++
T Consensus       151 GtfL  154 (617)
T TIGR00136       151 GTFL  154 (617)
T ss_pred             Cccc
Confidence            9995

GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).

>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase

Probab=98.70  E-value=3.4e-07  Score=91.86  Aligned_cols=50  Identities=12%  Similarity=0.169  Sum_probs=41.4

Q ss_pred             CCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEEEecCCCChHHH
Q psy9141         109 YPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAYSGVR  160 (379)
Q Consensus       109 ~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlVV~AdG~~S~vr  160 (379)
                      ..+++++++++|++++.+++++.+.+. +|+..+ +.+|.||.|.|..+.+.
T Consensus       223 ~~gi~i~~~~~v~~i~~~~~~v~v~~~-~g~~~~-i~~D~vi~a~G~~p~~~  272 (461)
T TIGR01350       223 KKGVKILTNTKVTAVEKNDDQVVYENK-GGETET-LTGEKVLVAVGRKPNTE  272 (461)
T ss_pred             HcCCEEEeCCEEEEEEEeCCEEEEEEe-CCcEEE-EEeCEEEEecCCcccCC
Confidence            358999999999999888788888776 774334 99999999999998765

The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.

>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional

Probab=98.70  E-value=3.6e-07  Score=92.94  Aligned_cols=37  Identities=27%  Similarity=0.388  Sum_probs=34.0

Q ss_pred             CCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCC
Q psy9141           5 SKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIR   42 (379)
Q Consensus         5 ~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~   42 (379)
                      .++||||||+| +|+++|+.+++.|.+|+||||.+...
T Consensus         6 ~~~DVvVVG~G-aGl~aA~~aa~~G~~V~vlEk~~~~G   42 (513)
T PRK12837          6 EEVDVLVAGSG-GGVAGAYTAAREGLSVALVEATDKFG   42 (513)
T ss_pred             CccCEEEECch-HHHHHHHHHHHCCCcEEEEecCCCCC
Confidence            36899999999 99999999999999999999997644

>PRK05976 dihydrolipoamide dehydrogenase; Validated

Probab=98.70  E-value=3e-08  Score=99.80  Aligned_cols=136  Identities=14%  Similarity=0.148  Sum_probs=74.9

Q ss_pred             CCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeE
Q psy9141           5 SKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARM   84 (379)
Q Consensus         5 ~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~   84 (379)
                      ..|||+||||||+|+.+|..|++.|++|+|+|+.. ....  +..++   +++.  ..+++.......+...  ...++.
T Consensus         3 ~~ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~~~-~GG~--c~~~g---ciPs--k~l~~~a~~~~~~~~~--~~~g~~   72 (472)
T PRK05976          3 KEYDLVIIGGGPGGYVAAIRAGQLGLKTALVEKGK-LGGT--CLHKG---CIPS--KALLHSAEVFQTAKKA--SPFGIS   72 (472)
T ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCeEEEEEccC-CCcc--eEcCC---cCch--HHHHHHHHHHHHHHHH--HhcCcc
Confidence            47999999999999999999999999999999863 2211  11111   2222  2222221111111110  000000


Q ss_pred             EEecCCcEEEeeCCCCC------------cHHHHhcCCCCeEEeCceEEEEEec-----CCeEEEEEccCCceeEEEeec
Q psy9141          85 IHGQNGKLREIPYDPVH------------NQVELEQYPDCNIYFQHKLINLDVN-----SGNVTFYRTEDNSETKITDNQ  147 (379)
Q Consensus        85 ~~~~~g~~~~~~~~~~~------------~~~~~~~~~gv~i~~~~~v~~i~~~-----~~~v~v~~~~~G~~~~~i~ad  147 (379)
                      ...     ...+|....            ......+..+++++.+. ++.+..+     ++.+++.+. +|+..+ +.+|
T Consensus        73 ~~~-----~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~-a~~i~~~~~~~~~~~~~v~~~-~g~~~~-~~~d  144 (472)
T PRK05976         73 VSG-----PALDFAKVQERKDGIVDRLTKGVAALLKKGKIDVFHGI-GRILGPSIFSPMPGTVSVETE-TGENEM-IIPE  144 (472)
T ss_pred             CCC-----CccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEE-EEEeCCCCCcCCceEEEEEeC-CCceEE-EEcC
Confidence            000     001110000            00233345689998874 4445433     236778777 774334 9999


Q ss_pred             EEEecCCCChH
Q psy9141         148 LIIGADGAYSG  158 (379)
Q Consensus       148 lVV~AdG~~S~  158 (379)
                      .||.|+|....
T Consensus       145 ~lViATGs~p~  155 (472)
T PRK05976        145 NLLIATGSRPV  155 (472)
T ss_pred             EEEEeCCCCCC
Confidence            99999998763

>PRK11883 protoporphyrinogen oxidase; Reviewed

Probab=98.69  E-value=3e-07  Score=91.77  Aligned_cols=42  Identities=12%  Similarity=0.044  Sum_probs=36.6

Q ss_pred             eEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEEEecCCCChH
Q psy9141         113 NIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAYSG  158 (379)
Q Consensus       113 ~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlVV~AdG~~S~  158 (379)
                      +|+++++|++|+.+++++++.+. +|++   ++||.||.|.-....
T Consensus       235 ~i~~~~~V~~i~~~~~~~~v~~~-~g~~---~~~d~vI~a~p~~~~  276 (451)
T PRK11883        235 TIHKGTPVTKIDKSGDGYEIVLS-NGGE---IEADAVIVAVPHPVL  276 (451)
T ss_pred             eEEeCCEEEEEEEcCCeEEEEEC-CCCE---EEcCEEEECCCHHHH
Confidence            79999999999998888988888 8887   999999999776543

>PRK10262 thioredoxin reductase; Provisional

Probab=98.68  E-value=1.2e-07  Score=90.52  Aligned_cols=38  Identities=21%  Similarity=0.304  Sum_probs=34.9

Q ss_pred             CCCCCCCcEEEECCChHHHHHHHHHHhCCCcEEEEccC
Q psy9141           1 MKCNSKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAR   38 (379)
Q Consensus         1 M~~m~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~   38 (379)
                      |.+.+.+||+||||||+|+++|..|++.|++++++|+.
T Consensus         1 ~~~~~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~   38 (321)
T PRK10262          1 MGTTKHSKLLILGSGPAGYTAAVYAARANLQPVLITGM   38 (321)
T ss_pred             CCCCCcCCEEEECCCHHHHHHHHHHHHCCCCeEEEEee
Confidence            55667899999999999999999999999999999965

>PRK06416 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.68  E-value=5.9e-07  Score=90.22  Aligned_cols=51  Identities=16%  Similarity=0.143  Sum_probs=40.7

Q ss_pred             cCCCCeEEeCceEEEEEecCCeEEEEEccCC-ceeEEEeecEEEecCCCChHHH
Q psy9141         108 QYPDCNIYFQHKLINLDVNSGNVTFYRTEDN-SETKITDNQLIIGADGAYSGVR  160 (379)
Q Consensus       108 ~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G-~~~~~i~adlVV~AdG~~S~vr  160 (379)
                      +..+++++.+++|++++.+++++.+.+. +| +..+ +.+|.||.|.|....+.
T Consensus       224 ~~~gV~i~~~~~V~~i~~~~~~v~v~~~-~gg~~~~-i~~D~vi~a~G~~p~~~  275 (462)
T PRK06416        224 KKRGIKIKTGAKAKKVEQTDDGVTVTLE-DGGKEET-LEADYVLVAVGRRPNTE  275 (462)
T ss_pred             HHcCCEEEeCCEEEEEEEeCCEEEEEEE-eCCeeEE-EEeCEEEEeeCCccCCC
Confidence            3468999999999999987778877776 54 3234 99999999999987654

>KOG2853|consensus

Probab=98.68  E-value=3.3e-07  Score=85.08  Aligned_cols=37  Identities=30%  Similarity=0.405  Sum_probs=33.0

Q ss_pred             CCcEEEECCChHHHHHHHHHHhC----CCcEEEEccCCCCC
Q psy9141           6 KKSVVIVGGGLVGSLSACMFAKN----QYEVNLYEAREDIR   42 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La~~----G~~V~viE~~~~~~   42 (379)
                      +.||+|||||-.|++.|++|++.    |++|+|+||+....
T Consensus        86 ~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddtyt  126 (509)
T KOG2853|consen   86 HCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDTYT  126 (509)
T ss_pred             ccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCccc
Confidence            56999999999999999999764    79999999998654

>COG1231 Monoamine oxidase [Amino acid transport and metabolism]

Probab=98.68  E-value=1.8e-07  Score=90.46  Aligned_cols=39  Identities=36%  Similarity=0.595  Sum_probs=36.0

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCC
Q psy9141           4 NSKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIR   42 (379)
Q Consensus         4 m~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~   42 (379)
                      ++..||+|||||.+||++|+.|.+.|++|+|+|.++...
T Consensus         5 ~~~~~viivGaGlaGL~AA~eL~kaG~~v~ilEar~r~G   43 (450)
T COG1231           5 PKTADVIIVGAGLAGLSAAYELKKAGYQVQILEARDRVG   43 (450)
T ss_pred             CCCCcEEEECCchHHHHHHHHHhhcCcEEEEEeccCCcC
Confidence            567899999999999999999999999999999988654

>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []

Probab=98.67  E-value=4e-08  Score=99.73  Aligned_cols=136  Identities=18%  Similarity=0.223  Sum_probs=73.2

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeEEE
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARMIH   86 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~   86 (379)
                      ..|+|||||++||++|..|.+.|++++++||.+..+....+....-     + +.     -.+++.+... .+-.-+.+.
T Consensus         2 krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~iGG~W~~~~~~~-----~-g~-----~~~y~sl~~n-~sk~~~~fs   69 (531)
T PF00743_consen    2 KRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDIGGLWRYTENPE-----D-GR-----SSVYDSLHTN-TSKEMMAFS   69 (531)
T ss_dssp             -EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSSSGGGCHSTTCC-----C-SE-----GGGSTT-B-S-S-GGGSCCT
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCCCeEEecCCCCCccCeeCCcCC-----C-Cc-----cccccceEEe-eCchHhcCC
Confidence            3799999999999999999999999999999998754321111000     0 00     0012211111 000000000


Q ss_pred             ecCCcEEEeeCCCCCcH-------HHHhcCCC--CeEEeCceEEEEEecC-----CeEEEEEccCCceeEEEeecEEEec
Q psy9141          87 GQNGKLREIPYDPVHNQ-------VELEQYPD--CNIYFQHKLINLDVNS-----GNVTFYRTEDNSETKITDNQLIIGA  152 (379)
Q Consensus        87 ~~~g~~~~~~~~~~~~~-------~~~~~~~g--v~i~~~~~v~~i~~~~-----~~v~v~~~~~G~~~~~i~adlVV~A  152 (379)
                      +..   ..-.+......       +..++.-+  -.|+++++|++++..+     +.|+|++..+|+..+ -..|.||.|
T Consensus        70 dfp---~p~~~p~f~~~~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~~~g~~~~-~~fD~Vvva  145 (531)
T PF00743_consen   70 DFP---FPEDYPDFPSHSEVLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGKWEVTTENDGKEET-EEFDAVVVA  145 (531)
T ss_dssp             TS----HCCCCSSSEBHHHHHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETEEEEEETTTTEEEE-EEECEEEEE
T ss_pred             CcC---CCCCCCCCCCHHHHHHHHHHHHhhhCCcceEEEccEEeEeeeccccCCCceEEEEeecCCeEEE-EEeCeEEEc
Confidence            000   00001111111       22222223  3699999999998764     368888764565545 678999999


Q ss_pred             CCCChH
Q psy9141         153 DGAYSG  158 (379)
Q Consensus       153 dG~~S~  158 (379)
                      +|.++.
T Consensus       146 tG~~~~  151 (531)
T PF00743_consen  146 TGHFSK  151 (531)
T ss_dssp             E-SSSC
T ss_pred             CCCcCC
Confidence            999983

Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....

>PLN02507 glutathione reductase

Probab=98.67  E-value=4.8e-07  Score=91.65  Aligned_cols=49  Identities=14%  Similarity=0.187  Sum_probs=41.8

Q ss_pred             cCCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEEEecCCCChHHH
Q psy9141         108 QYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAYSGVR  160 (379)
Q Consensus       108 ~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlVV~AdG~~S~vr  160 (379)
                      +..|++++.+++|++++.+++++.+.+. +|++   +++|.||.|.|+...+.
T Consensus       255 ~~~GI~i~~~~~V~~i~~~~~~~~v~~~-~g~~---i~~D~vl~a~G~~pn~~  303 (499)
T PLN02507        255 EGRGINLHPRTNLTQLTKTEGGIKVITD-HGEE---FVADVVLFATGRAPNTK  303 (499)
T ss_pred             HhCCCEEEeCCEEEEEEEeCCeEEEEEC-CCcE---EEcCEEEEeecCCCCCC
Confidence            3468999999999999877777888877 7876   99999999999988664

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=98.66  E-value=2.6e-07  Score=94.86  Aligned_cols=112  Identities=15%  Similarity=0.243  Sum_probs=69.0

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeEE
Q psy9141           6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARMI   85 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~~   85 (379)
                      .|||+||||||||+++|..|++.|++|+|||+....       |. +  ....             .+.  ..+  +.. 
T Consensus         4 ~yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~~~G-------G~-~--~~~~-------------~i~--~~p--g~~-   55 (555)
T TIGR03143         4 IYDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKDDFG-------GQ-I--TITS-------------EVV--NYP--GIL-   55 (555)
T ss_pred             cCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCC-------ce-E--Eecc-------------ccc--cCC--CCc-
Confidence            489999999999999999999999999999986311       21 1  0000             000  000  000 


Q ss_pred             EecCCcEEEeeCCCCCcHHHHhcCCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEEEecCCCChH
Q psy9141          86 HGQNGKLREIPYDPVHNQVELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAYSG  158 (379)
Q Consensus        86 ~~~~g~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlVV~AdG~~S~  158 (379)
                       ...+.    .+..  ......+..+++++ .++|++++.+++.+.+... +|+    +.++.||.|+|.++.
T Consensus        56 -~~~~~----~l~~--~l~~~~~~~gv~~~-~~~V~~i~~~~~~~~V~~~-~g~----~~a~~lVlATGa~p~  115 (555)
T TIGR03143        56 -NTTGP----ELMQ--EMRQQAQDFGVKFL-QAEVLDVDFDGDIKTIKTA-RGD----YKTLAVLIATGASPR  115 (555)
T ss_pred             -CCCHH----HHHH--HHHHHHHHcCCEEe-ccEEEEEEecCCEEEEEec-CCE----EEEeEEEECCCCccC
Confidence             00000    0000  00122233478875 6788888877666677766 663    889999999999764

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>TIGR00562 proto_IX_ox protoporphyrinogen oxidase

Probab=98.66  E-value=3.3e-07  Score=91.90  Aligned_cols=67  Identities=31%  Similarity=0.491  Sum_probs=47.4

Q ss_pred             CcEEEECCChHHHHHHHHHHhC----CCcEEEEccCCCCCCC---CCCCCcccc------cccCHHHHHHHHHCCChHHH
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKN----QYEVNLYEAREDIRNS---GLSEGKSIN------LALSVRGREALRRIGLEDKL   73 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~----G~~V~viE~~~~~~~~---~~~~g~~i~------~al~~~~~~~l~~lGl~~~l   73 (379)
                      .||+|||||++||++|+.|+++    |++|+|+|+++.....   ...+|..+.      ..-.++..++++++|+...+
T Consensus         3 ~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~GG~~~t~~~~g~~~e~G~~~~~~~~~~~~~l~~~lgl~~~~   82 (462)
T TIGR00562         3 KHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVGGKIQTVKEDGYLIERGPDSFLERKKSAPDLVKDLGLEHVL   82 (462)
T ss_pred             ceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcCcceEEEEeeCCEEEecCccccccCChHHHHHHHHcCCCccc
Confidence            4899999999999999999999    9999999999865311   001111110      01234578899999975543

This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.

>PTZ00363 rab-GDP dissociation inhibitor; Provisional

Probab=98.66  E-value=2.8e-07  Score=91.51  Aligned_cols=39  Identities=15%  Similarity=0.222  Sum_probs=36.2

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCC
Q psy9141           4 NSKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIR   42 (379)
Q Consensus         4 m~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~   42 (379)
                      +.+|||+|||+|.+||.+|..|++.|.+|+++|+++..+
T Consensus         2 ~~~~DViViGtGL~e~ilAa~Ls~~GkkVLhlD~n~~yG   40 (443)
T PTZ00363          2 DETYDVIVCGTGLKECILSGLLSVNGKKVLHMDRNPYYG   40 (443)
T ss_pred             CCcceEEEECCChHHHHHHhhhhhCCCEEEEecCCCCcC
Confidence            457999999999999999999999999999999998665

>PRK09897 hypothetical protein; Provisional

Probab=98.66  E-value=1.9e-07  Score=94.66  Aligned_cols=42  Identities=17%  Similarity=0.274  Sum_probs=35.5

Q ss_pred             CeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEEEecCCCC
Q psy9141         112 CNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAY  156 (379)
Q Consensus       112 v~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlVV~AdG~~  156 (379)
                      +.++.+++|++++.+++++.+++..+|..   +.+|.||.|+|..
T Consensus       124 V~v~~~~~V~~I~~~~~g~~V~t~~gg~~---i~aD~VVLAtGh~  165 (534)
T PRK09897        124 VAVYESCQVTDLQITNAGVMLATNQDLPS---ETFDLAVIATGHV  165 (534)
T ss_pred             EEEEECCEEEEEEEeCCEEEEEECCCCeE---EEcCEEEECCCCC
Confidence            78888999999999989999887613455   8999999999974

>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup

Probab=98.66  E-value=3.1e-07  Score=95.01  Aligned_cols=31  Identities=35%  Similarity=0.682  Sum_probs=30.1

Q ss_pred             EEEECCChHHHHHHHHHHhCCCcEEEEccCC
Q psy9141           9 VVIVGGGLVGSLSACMFAKNQYEVNLYEARE   39 (379)
Q Consensus         9 VvIVGaGpaGl~~A~~La~~G~~V~viE~~~   39 (379)
                      |+|||+|+|||++|+.+++.|.+|+|+||.+
T Consensus         1 VlVVG~G~AGl~AAl~Aae~G~~VilleK~~   31 (603)
T TIGR01811         1 VIVVGTGLAGGMAAAKLAELGYHVKLFSYVD   31 (603)
T ss_pred             CEEECccHHHHHHHHHHHHcCCCEEEEEecC
Confidence            7999999999999999999999999999987

This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.

>TIGR02734 crtI_fam phytoene desaturase

Probab=98.66  E-value=2.9e-07  Score=93.45  Aligned_cols=52  Identities=12%  Similarity=0.227  Sum_probs=42.4

Q ss_pred             cCCCCeEEeCceEEEEEecCCe-EEEEEccCCceeEEEeecEEEecCCCChHHHHHh
Q psy9141         108 QYPDCNIYFQHKLINLDVNSGN-VTFYRTEDNSETKITDNQLIIGADGAYSGVRKCL  163 (379)
Q Consensus       108 ~~~gv~i~~~~~v~~i~~~~~~-v~v~~~~~G~~~~~i~adlVV~AdG~~S~vr~~l  163 (379)
                      +..|++|+++++|++|..++++ +.|++. +|++   ++||.||.|.+........+
T Consensus       230 ~~~G~~i~~~~~V~~i~~~~~~~~~V~~~-~g~~---~~ad~VI~a~~~~~~~~~l~  282 (502)
T TIGR02734       230 EDLGGELRLNAEVIRIETEGGRATAVHLA-DGER---LDADAVVSNADLHHTYRRLL  282 (502)
T ss_pred             HHCCCEEEECCeEEEEEeeCCEEEEEEEC-CCCE---EECCEEEECCcHHHHHHHhc
Confidence            3468999999999999887765 457777 8877   99999999998877776654

Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.

>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]

Probab=98.65  E-value=2.1e-07  Score=90.70  Aligned_cols=150  Identities=18%  Similarity=0.252  Sum_probs=88.8

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCH---------------------HHHHHHHH
Q psy9141           8 SVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSV---------------------RGREALRR   66 (379)
Q Consensus         8 dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~---------------------~~~~~l~~   66 (379)
                      ||+|||+|+|||++|+.|++. ++|+|+-|.+.....+.+...+|..++.+                     .+.+.+-.
T Consensus         9 dV~IiGsG~AGL~~AL~L~~~-~~V~vltk~~~~~~sS~~AQGGIAa~~~~~Ds~~~Hv~DTL~AG~glcD~~aV~~iv~   87 (518)
T COG0029           9 DVLIIGSGLAGLTAALSLAPS-FRVTVLTKGPLGESSSYWAQGGIAAALSEDDSPELHVADTLAAGAGLCDEEAVEFIVS   87 (518)
T ss_pred             cEEEECCcHHHHHHHHhCCCC-CcEEEEeCCCCCCccchhhcCceEeeeCCCCCHHHHHHHHHHhcCCCCcHHHHHHHHH
Confidence            999999999999999999999 99999999987654333333344333332                     11111111


Q ss_pred             CC--ChHHHHhCCCCcee-----eEEEecCCcE--EEeeCCCCCcH-------HHHhcCCCCeEEeCceEEEEEecCC-e
Q psy9141          67 IG--LEDKLLAHGIPMRA-----RMIHGQNGKL--REIPYDPVHNQ-------VELEQYPDCNIYFQHKLINLDVNSG-N  129 (379)
Q Consensus        67 lG--l~~~l~~~~~~~~~-----~~~~~~~g~~--~~~~~~~~~~~-------~~~~~~~gv~i~~~~~v~~i~~~~~-~  129 (379)
                      -+  ..+.+...+.++..     +.+....+..  ..+......++       ..+.+.++++++.++.+.++..+++ .
T Consensus        88 ~~~~ai~~Li~~Gv~FDr~~~g~~~lt~EggHS~rRIlH~~~~TG~~I~~~L~~~v~~~p~I~v~e~~~a~~li~~~~~~  167 (518)
T COG0029          88 EAPEAIEWLIDLGVPFDRDEDGRLHLTREGGHSRRRILHAADATGKEIMTALLKKVRNRPNITVLEGAEALDLIIEDGIG  167 (518)
T ss_pred             hHHHHHHHHHHcCCCCcCCCCCceeeeeecccCCceEEEecCCccHHHHHHHHHHHhcCCCcEEEecchhhhhhhcCCce
Confidence            11  12233334444431     1111111111  11111112232       4556668999999999999888877 3


Q ss_pred             E---EEEEccCCceeEEEeecEEEecCCCChHHH
Q psy9141         130 V---TFYRTEDNSETKITDNQLIIGADGAYSGVR  160 (379)
Q Consensus       130 v---~v~~~~~G~~~~~i~adlVV~AdG~~S~vr  160 (379)
                      +   .+... +++..+ +.|+.||.|+|..+.+=
T Consensus       168 ~~Gv~~~~~-~~~~~~-~~a~~vVLATGG~g~ly  199 (518)
T COG0029         168 VAGVLVLNR-NGELGT-FRAKAVVLATGGLGGLY  199 (518)
T ss_pred             EeEEEEecC-CCeEEE-EecCeEEEecCCCcccc
Confidence            3   33322 333445 89999999999988543

>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial

Probab=98.64  E-value=4.5e-07  Score=90.74  Aligned_cols=50  Identities=14%  Similarity=0.107  Sum_probs=39.5

Q ss_pred             cCCCCeEEeCceEEEEEecCCe-EEEEEccCCceeEEEeecEEEecCCCChHHH
Q psy9141         108 QYPDCNIYFQHKLINLDVNSGN-VTFYRTEDNSETKITDNQLIIGADGAYSGVR  160 (379)
Q Consensus       108 ~~~gv~i~~~~~v~~i~~~~~~-v~v~~~~~G~~~~~i~adlVV~AdG~~S~vr  160 (379)
                      +..|++++.++.+++++.++++ +.+.+. +|+ .+ +++|.||.|.|+...+.
T Consensus       218 ~~~gI~i~~~~~v~~i~~~~~~~~~v~~~-~g~-~~-i~~D~vi~a~G~~pn~~  268 (450)
T TIGR01421       218 EKEGINVHKLSKPVKVEKTVEGKLVIHFE-DGK-SI-DDVDELIWAIGRKPNTK  268 (450)
T ss_pred             HHcCCEEEcCCEEEEEEEeCCceEEEEEC-CCc-EE-EEcCEEEEeeCCCcCcc
Confidence            3468999999999999876544 667776 773 23 89999999999998764

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.

>PRK07233 hypothetical protein; Provisional

Probab=98.63  E-value=5.1e-07  Score=89.58  Aligned_cols=63  Identities=32%  Similarity=0.451  Sum_probs=45.2

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCC---CCCCccc----c--cccCHHHHHHHHHCCCh
Q psy9141           8 SVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSG---LSEGKSI----N--LALSVRGREALRRIGLE   70 (379)
Q Consensus         8 dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~---~~~g~~i----~--~al~~~~~~~l~~lGl~   70 (379)
                      +|+|||||++||++|+.|++.|++|+|+|+++.+....   ...|..+    +  ..-.+...++++++|+.
T Consensus         1 ~vvVIGaGiaGL~aA~~L~~~G~~v~vlE~~~~~GG~~~s~~~~g~~~d~g~~~~~~~~~~~~~l~~~lg~~   72 (434)
T PRK07233          1 KIAIVGGGIAGLAAAYRLAKRGHEVTVFEADDQLGGLAASFEFGGLPIERFYHHIFKSDEALLELLDELGLE   72 (434)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCCCceeeeccCCcchhhhhhhhccccHHHHHHHHHcCCC
Confidence            59999999999999999999999999999998765320   0111110    0  01235667888888863

>PRK12842 putative succinate dehydrogenase; Reviewed

Probab=98.63  E-value=5e-07  Score=93.17  Aligned_cols=42  Identities=21%  Similarity=0.209  Sum_probs=37.1

Q ss_pred             CCCCCCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCC
Q psy9141           1 MKCNSKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIR   42 (379)
Q Consensus         1 M~~m~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~   42 (379)
                      |.+..++||+|||+|++|+++|+.++++|.+|+|+||.+...
T Consensus         4 ~~~~~~~DVvVVG~G~aGl~AA~~aa~~G~~v~llEk~~~~g   45 (574)
T PRK12842          4 MTNELTCDVLVIGSGAGGLSAAITARKLGLDVVVLEKEPVFG   45 (574)
T ss_pred             cCcCCCCCEEEECcCHHHHHHHHHHHHcCCeEEEEecCCCCC
Confidence            444457899999999999999999999999999999998654

>PRK12416 protoporphyrinogen oxidase; Provisional

Probab=98.61  E-value=6.1e-07  Score=90.10  Aligned_cols=47  Identities=4%  Similarity=-0.064  Sum_probs=37.5

Q ss_pred             CeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEEEecCCCChHHHHHh
Q psy9141         112 CNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAYSGVRKCL  163 (379)
Q Consensus       112 v~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlVV~AdG~~S~vr~~l  163 (379)
                      ++|+++++|++|+.+++++++++. +|++   +.||.||.|.- .....+.+
T Consensus       239 ~~i~~~~~V~~I~~~~~~~~v~~~-~g~~---~~ad~VI~a~p-~~~~~~ll  285 (463)
T PRK12416        239 TVVKKGAVTTAVSKQGDRYEISFA-NHES---IQADYVVLAAP-HDIAETLL  285 (463)
T ss_pred             ccEEcCCEEEEEEEcCCEEEEEEC-CCCE---EEeCEEEECCC-HHHHHhhc
Confidence            479999999999999999988887 8876   89999999884 33344433

>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=98.60  E-value=9.7e-07  Score=90.61  Aligned_cols=37  Identities=27%  Similarity=0.305  Sum_probs=34.4

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCC
Q psy9141           6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIR   42 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~   42 (379)
                      ++||+|||+|.+|+++|+.+++.|.+|+|||+.+...
T Consensus         6 ~~DvvIiG~G~aGl~aA~~~a~~G~~v~liEk~~~~g   42 (557)
T PRK12844          6 TYDVVVVGSGGGGMCAALAAADSGLEPLIVEKQDKVG   42 (557)
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCC
Confidence            6899999999999999999999999999999987544

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=98.59  E-value=9.5e-07  Score=66.34  Aligned_cols=80  Identities=21%  Similarity=0.304  Sum_probs=60.7

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeEEEe
Q psy9141           8 SVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARMIHG   87 (379)
Q Consensus         8 dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~   87 (379)
                      .|+|||||+.|+-+|..|++.|.+|+|+++.+.+..           .+.+.....+.                      
T Consensus         1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~~-----------~~~~~~~~~~~----------------------   47 (80)
T PF00070_consen    1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLLP-----------GFDPDAAKILE----------------------   47 (80)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSST-----------TSSHHHHHHHH----------------------
T ss_pred             CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhhh-----------hcCHHHHHHHH----------------------
Confidence            489999999999999999999999999999986641           12233322221                      


Q ss_pred             cCCcEEEeeCCCCCcHHHHhcCCCCeEEeCceEEEEEecCCeEEEEEccCC
Q psy9141          88 QNGKLREIPYDPVHNQVELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDN  138 (379)
Q Consensus        88 ~~g~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G  138 (379)
                                      ..+.+ .|+++++++.+++++.++++++|++. ||
T Consensus        48 ----------------~~l~~-~gV~v~~~~~v~~i~~~~~~~~V~~~-~g   80 (80)
T PF00070_consen   48 ----------------EYLRK-RGVEVHTNTKVKEIEKDGDGVEVTLE-DG   80 (80)
T ss_dssp             ----------------HHHHH-TTEEEEESEEEEEEEEETTSEEEEEE-TS
T ss_pred             ----------------HHHHH-CCCEEEeCCEEEEEEEeCCEEEEEEe-cC
Confidence                            11222 48999999999999999887778777 76

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=98.58  E-value=8e-07  Score=91.65  Aligned_cols=38  Identities=21%  Similarity=0.225  Sum_probs=35.0

Q ss_pred             CCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCC
Q psy9141           5 SKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIR   42 (379)
Q Consensus         5 ~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~   42 (379)
                      .++||||||+|++|+++|+.+++.|.+|+|+||.+...
T Consensus        10 ~~~DVvVVG~G~AGl~AA~~aae~G~~VivlEk~~~~g   47 (584)
T PRK12835         10 REVDVLVVGSGGGGMTAALTAAARGLDTLVVEKSAHFG   47 (584)
T ss_pred             CcCCEEEECccHHHHHHHHHHHHCCCcEEEEEcCCCCC
Confidence            36899999999999999999999999999999998654

>TIGR02053 MerA mercuric reductase

Probab=98.58  E-value=1.1e-06  Score=88.41  Aligned_cols=33  Identities=24%  Similarity=0.227  Sum_probs=31.8

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEccCC
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEARE   39 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~   39 (379)
                      |||+||||||+|+++|..+++.|++|+|+|+.+
T Consensus         1 yDvvVIGaGpaG~~aA~~aa~~g~~v~lie~~~   33 (463)
T TIGR02053         1 YDLVIIGSGAAAFAAAIKAAELGASVAMVERGP   33 (463)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCc
Confidence            699999999999999999999999999999875

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.

>KOG2415|consensus

Probab=98.57  E-value=3.1e-07  Score=87.33  Aligned_cols=151  Identities=17%  Similarity=0.181  Sum_probs=86.3

Q ss_pred             CCCcEEEECCChHHHHHHHHHHhC------CCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhC-C
Q psy9141           5 SKKSVVIVGGGLVGSLSACMFAKN------QYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAH-G   77 (379)
Q Consensus         5 ~~~dVvIVGaGpaGl~~A~~La~~------G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~-~   77 (379)
                      ..+||+|||||||||++|+.|.|.      .++|+|+||........ -.|.    .+.|.++..|-  =-|.+..+. .
T Consensus        75 e~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~Gght-lSGa----viep~aldEL~--P~wke~~apl~  147 (621)
T KOG2415|consen   75 EEVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVGGHT-LSGA----VIEPGALDELL--PDWKEDGAPLN  147 (621)
T ss_pred             ccccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccccCCce-ecce----eeccchhhhhC--cchhhcCCccc
Confidence            368999999999999999998764      56999999998775321 1122    13343332210  112221111 2


Q ss_pred             CCceeeE--EEecCCcEEEeeCCCCC---c-------H-----HHHhcCCCCeEEeCceEEEEEecCCe-EE-EEEc---
Q psy9141          78 IPMRARM--IHGQNGKLREIPYDPVH---N-------Q-----VELEQYPDCNIYFQHKLINLDVNSGN-VT-FYRT---  135 (379)
Q Consensus        78 ~~~~~~~--~~~~~g~~~~~~~~~~~---~-------~-----~~~~~~~gv~i~~~~~v~~i~~~~~~-v~-v~~~---  135 (379)
                      .++..-+  +....++ ..+|.....   +       +     -..++..|++|+-+..+.++..++++ |. +.+.   
T Consensus       148 t~vT~d~~~fLt~~~~-i~vPv~~pm~NhGNYvv~L~~~v~wLg~kAEe~GvEiyPg~aaSevly~edgsVkGiaT~D~G  226 (621)
T KOG2415|consen  148 TPVTSDKFKFLTGKGR-ISVPVPSPMDNHGNYVVSLGQLVRWLGEKAEELGVEIYPGFAASEVLYDEDGSVKGIATNDVG  226 (621)
T ss_pred             ccccccceeeeccCce-eecCCCcccccCCcEEEEHHHHHHHHHHHHHhhCceeccccchhheeEcCCCcEeeEeecccc
Confidence            3333323  3333333 222221111   1       1     23345579999988888887776653 32 2221   


Q ss_pred             --cCCc-------eeEEEeecEEEecCCCChHHHHHhh
Q psy9141         136 --EDNS-------ETKITDNQLIIGADGAYSGVRKCLM  164 (379)
Q Consensus       136 --~~G~-------~~~~i~adlVV~AdG~~S~vr~~l~  164 (379)
                        .+|.       -.+ +.|+..|-|.|.+..+-++++
T Consensus       227 I~k~G~pKd~FerGme-~hak~TifAEGc~G~Lskqi~  263 (621)
T KOG2415|consen  227 ISKDGAPKDTFERGME-FHAKVTIFAEGCHGSLSKQII  263 (621)
T ss_pred             ccCCCCccccccccce-ecceeEEEeccccchhHHHHH
Confidence              1221       123 899999999999987777774

>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle

Probab=98.57  E-value=9.3e-07  Score=86.02  Aligned_cols=54  Identities=7%  Similarity=0.135  Sum_probs=43.3

Q ss_pred             HHHhcCCCCeEEeCceEEEEEecCCe-EEEEEc--cCCceeEEEeecEEEecCCCChH
Q psy9141         104 VELEQYPDCNIYFQHKLINLDVNSGN-VTFYRT--EDNSETKITDNQLIIGADGAYSG  158 (379)
Q Consensus       104 ~~~~~~~gv~i~~~~~v~~i~~~~~~-v~v~~~--~~G~~~~~i~adlVV~AdG~~S~  158 (379)
                      ..+.+.++++++++++|++|++.+++ |.|...  .+|+..+ +.|++|+...|++|.
T Consensus       189 ~~l~~~~~~~~~~~~eV~~i~r~~dg~W~v~~~~~~~~~~~~-v~a~FVfvGAGG~aL  245 (488)
T PF06039_consen  189 EYLQKQKGFELHLNHEVTDIKRNGDGRWEVKVKDLKTGEKRE-VRAKFVFVGAGGGAL  245 (488)
T ss_pred             HHHHhCCCcEEEecCEeCeeEECCCCCEEEEEEecCCCCeEE-EECCEEEECCchHhH
Confidence            34455679999999999999998876 887653  1466666 999999999999984

The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process

>PRK13977 myosin-cross-reactive antigen; Provisional

Probab=98.56  E-value=2.1e-06  Score=86.67  Aligned_cols=37  Identities=19%  Similarity=0.338  Sum_probs=33.6

Q ss_pred             CCcEEEECCChHHHHHHHHHHhC----CCcEEEEccCCCCC
Q psy9141           6 KKSVVIVGGGLVGSLSACMFAKN----QYEVNLYEAREDIR   42 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La~~----G~~V~viE~~~~~~   42 (379)
                      +.+|+|||||++||++|..|++.    |.+|+|+|+.+.+.
T Consensus        22 ~~~a~IIGaGiAGLAAA~~L~~dg~~~G~~VtIlEk~~~~G   62 (576)
T PRK13977         22 NKKAYIIGSGLASLAAAVFLIRDGQMPGENITILEELDVPG   62 (576)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHccCCCCCcEEEEeCCCCCC
Confidence            46899999999999999999995    68999999998765

>TIGR02731 phytoene_desat phytoene desaturase

Probab=98.56  E-value=1.4e-06  Score=87.35  Aligned_cols=64  Identities=23%  Similarity=0.310  Sum_probs=47.1

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCC----CCCC----cccc--cccCHHHHHHHHHCCChH
Q psy9141           8 SVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSG----LSEG----KSIN--LALSVRGREALRRIGLED   71 (379)
Q Consensus         8 dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~----~~~g----~~i~--~al~~~~~~~l~~lGl~~   71 (379)
                      +|+|||||++||++|+.|+++|++|+|+|+++......    ..+|    .+.+  ....++..++++++|+.+
T Consensus         1 ~v~IiGaG~aGl~aA~~L~~~G~~v~vlE~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~   74 (453)
T TIGR02731         1 RVAIAGAGLAGLSCAKYLADAGHTPIVLEARDVLGGKVAAWKDEDGDWYETGLHIFFGAYPNMLQLLKELNIED   74 (453)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcceeECCCCCEEEcCcceeccCCchHHHHHHHcCCcc
Confidence            58999999999999999999999999999998654210    0112    1111  123478899999999754

Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.

>PLN02612 phytoene desaturase

Probab=98.55  E-value=1.5e-06  Score=89.28  Aligned_cols=67  Identities=24%  Similarity=0.359  Sum_probs=48.5

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCC-CC---CCCcc----cc--cccCHHHHHHHHHCCChHH
Q psy9141           6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNS-GL---SEGKS----IN--LALSVRGREALRRIGLEDK   72 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~-~~---~~g~~----i~--~al~~~~~~~l~~lGl~~~   72 (379)
                      ..+|+|||||++||++|+.|+++|++|+|+|+++..... ..   .+|..    .+  ....++..++++++|+.+.
T Consensus        93 ~~~v~iiG~G~~Gl~~a~~l~~~g~~~~~~e~~~~~gG~~~s~~~~~G~~~D~G~h~~~g~~~~~~~ll~elG~~~~  169 (567)
T PLN02612         93 PLKVVIAGAGLAGLSTAKYLADAGHKPILLEARDVLGGKVAAWKDEDGDWYETGLHIFFGAYPNVQNLFGELGINDR  169 (567)
T ss_pred             CCCEEEECCCHHHHHHHHHHHhcCCeEEEEecCCCCCCcceeeEcCCCCEEcCCceEEeCCCchHHHHHHHhCCccc
Confidence            578999999999999999999999999999998754321 00   01211    11  1234678899999997443

>PTZ00306 NADH-dependent fumarate reductase; Provisional

Probab=98.55  E-value=2e-06  Score=95.27  Aligned_cols=40  Identities=30%  Similarity=0.395  Sum_probs=36.0

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCC
Q psy9141           4 NSKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRN   43 (379)
Q Consensus         4 m~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~   43 (379)
                      +.++||||||+|.||+++|+.+++.|.+|+|+||.+....
T Consensus       407 t~~~DVvVVG~G~AGl~AAi~Aae~Ga~VivlEK~~~~GG  446 (1167)
T PTZ00306        407 SLPARVIVVGGGLAGCSAAIEAASCGAQVILLEKEAKLGG  446 (1167)
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEEccCCCCC
Confidence            4468999999999999999999999999999999976543

>PRK06327 dihydrolipoamide dehydrogenase; Validated

Probab=98.53  E-value=4.9e-07  Score=91.11  Aligned_cols=33  Identities=30%  Similarity=0.333  Sum_probs=31.8

Q ss_pred             CCCcEEEECCChHHHHHHHHHHhCCCcEEEEcc
Q psy9141           5 SKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEA   37 (379)
Q Consensus         5 ~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~   37 (379)
                      .+||++||||||+|+++|+.+++.|.+|+|||+
T Consensus         3 ~~~DviIIG~G~aG~~aA~~~~~~g~~v~lie~   35 (475)
T PRK06327          3 KQFDVVVIGAGPGGYVAAIRAAQLGLKVACIEA   35 (475)
T ss_pred             cceeEEEECCCHHHHHHHHHHHhCCCeEEEEec
Confidence            469999999999999999999999999999998

>PLN02568 polyamine oxidase

Probab=98.52  E-value=1.8e-06  Score=88.11  Aligned_cols=42  Identities=17%  Similarity=0.185  Sum_probs=36.7

Q ss_pred             CCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEEEecCCC
Q psy9141         110 PDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGA  155 (379)
Q Consensus       110 ~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlVV~AdG~  155 (379)
                      ++..|+++++|+.|+.++++++|++. +|++   ++||.||.+.-.
T Consensus       253 ~~~~I~ln~~V~~I~~~~~~v~V~~~-dG~~---~~aD~VIvTvPl  294 (539)
T PLN02568        253 PPGTIQLGRKVTRIEWQDEPVKLHFA-DGST---MTADHVIVTVSL  294 (539)
T ss_pred             CCCEEEeCCeEEEEEEeCCeEEEEEc-CCCE---EEcCEEEEcCCH
Confidence            44579999999999999999999998 8887   899999998754

>PF13454 NAD_binding_9: FAD-NAD(P)-binding

Probab=98.52  E-value=1.4e-06  Score=74.29  Aligned_cols=42  Identities=7%  Similarity=0.208  Sum_probs=35.0

Q ss_pred             CCCeEE-eCceEEEEEecCCeEEEEEccCCceeEEEeecEEEecCCC
Q psy9141         110 PDCNIY-FQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGA  155 (379)
Q Consensus       110 ~gv~i~-~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlVV~AdG~  155 (379)
                      .+++|. ...+|++++..++++.+.++ +|..   +.+|.||.|+|.
T Consensus       113 ~~i~v~~~~~~V~~i~~~~~~~~v~~~-~g~~---~~~d~VvLa~Gh  155 (156)
T PF13454_consen  113 AGITVRHVRAEVVDIRRDDDGYRVVTA-DGQS---IRADAVVLATGH  155 (156)
T ss_pred             CCcEEEEEeeEEEEEEEcCCcEEEEEC-CCCE---EEeCEEEECCCC
Confidence            355544 35699999999999999888 9987   999999999995

>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=98.52  E-value=8.2e-08  Score=84.89  Aligned_cols=116  Identities=21%  Similarity=0.246  Sum_probs=68.6

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCC-ChHHHHhCCCCceeeEEE
Q psy9141           8 SVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIG-LEDKLLAHGIPMRARMIH   86 (379)
Q Consensus         8 dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lG-l~~~l~~~~~~~~~~~~~   86 (379)
                      ||+||||||+|+++|..|++.+.+|+|+|+.+.....    ..    .+..   ..+.... ........    ...   
T Consensus         1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~~~~~~----~~----~~~~---~~~~~~~~~~~~~~~~----~~~---   62 (201)
T PF07992_consen    1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSPGTPYN----SG----CIPS---PLLVEIAPHRHEFLPA----RLF---   62 (201)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTSEEEEESSSSHHHHH----HS----HHHH---HHHHHHHHHHHHHHHH----HHG---
T ss_pred             CEEEEecHHHHHHHHHHHhcCCCeEEEEecccccccc----cc----cccc---cccccccccccccccc----ccc---
Confidence            7999999999999999999999999999876532110    10    0111   1110000 00000000    000   


Q ss_pred             ecCCcEEEeeCCCCCcHHHHhcCCCCeEEeCceEEEEEecCCeE-----EEEE-ccCCceeEEEeecEEEecCCCChH
Q psy9141          87 GQNGKLREIPYDPVHNQVELEQYPDCNIYFQHKLINLDVNSGNV-----TFYR-TEDNSETKITDNQLIIGADGAYSG  158 (379)
Q Consensus        87 ~~~g~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~v-----~v~~-~~~G~~~~~i~adlVV~AdG~~S~  158 (379)
                                   . -...+. ..+++++.++++.+++.....+     .+.. . .++..+ +.+|+||.|+|..+.
T Consensus        63 -------------~-~~~~~~-~~~v~~~~~~~v~~i~~~~~~~~~~~~~~~~~~-~~~~~~-~~~d~lviAtG~~~~  123 (201)
T PF07992_consen   63 -------------K-LVDQLK-NRGVEIRLNAKVVSIDPESKRVVCPAVTIQVVE-TGDGRE-IKYDYLVIATGSRPR  123 (201)
T ss_dssp             -------------H-HHHHHH-HHTHEEEHHHTEEEEEESTTEEEETCEEEEEEE-TTTEEE-EEEEEEEEESTEEEE
T ss_pred             -------------c-cccccc-cceEEEeeccccccccccccccccCcccceeec-cCCceE-ecCCeeeecCccccc
Confidence                         0 001222 2588898889999998877742     3321 2 344445 999999999997653

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....

>PRK13748 putative mercuric reductase; Provisional

Probab=98.51  E-value=4.7e-07  Score=93.16  Aligned_cols=35  Identities=20%  Similarity=0.196  Sum_probs=32.9

Q ss_pred             CCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCC
Q psy9141           5 SKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEARE   39 (379)
Q Consensus         5 ~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~   39 (379)
                      .+|||+||||||+|+++|..|++.|.+|+|||+..
T Consensus        97 ~~~DvvVIG~GpaG~~aA~~~~~~G~~v~lie~~~  131 (561)
T PRK13748         97 RPLHVAVIGSGGAAMAAALKAVEQGARVTLIERGT  131 (561)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHhCCCeEEEEecCc
Confidence            46999999999999999999999999999999873

>PRK06134 putative FAD-binding dehydrogenase; Reviewed

Probab=98.51  E-value=4.8e-07  Score=93.35  Aligned_cols=38  Identities=21%  Similarity=0.219  Sum_probs=34.6

Q ss_pred             CCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCC
Q psy9141           5 SKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIR   42 (379)
Q Consensus         5 ~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~   42 (379)
                      .++||+|||+|++|+++|+.+++.|.+|+||||.+...
T Consensus        11 ~~~dvvvvG~G~aG~~aa~~~~~~g~~v~~iek~~~~g   48 (581)
T PRK06134         11 LECDVLVIGSGAAGLSAAVTAAWHGLKVIVVEKDPVFG   48 (581)
T ss_pred             CccCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCC
Confidence            36899999999999999999999999999999987543

>KOG0029|consensus

Probab=98.51  E-value=1.4e-06  Score=87.50  Aligned_cols=39  Identities=31%  Similarity=0.544  Sum_probs=35.8

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCC
Q psy9141           4 NSKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIR   42 (379)
Q Consensus         4 m~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~   42 (379)
                      +++.+|+|||||++||++|..|.+.|++|+|+|.++..+
T Consensus        13 ~~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARdRvG   51 (501)
T KOG0029|consen   13 GKKKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARDRVG   51 (501)
T ss_pred             cCCCcEEEECCcHHHHHHHHHHHHcCCceEEEeccCCcC
Confidence            456899999999999999999999999999999998654

>KOG0042|consensus

Probab=98.50  E-value=3.5e-07  Score=89.54  Aligned_cols=57  Identities=26%  Similarity=0.280  Sum_probs=47.2

Q ss_pred             CCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHH
Q psy9141           5 SKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRR   66 (379)
Q Consensus         5 ~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~   66 (379)
                      ..+||+|||||-+|.-+|+-.+-+|++|.++|+.+.....++....     |-|.+.++|++
T Consensus        66 ~~fDVLIIGGGAtGaGcALDA~TRGLktaLVE~~DF~SGTSSkSTK-----LiHGGVRYLek  122 (680)
T KOG0042|consen   66 HEFDVLIIGGGATGAGCALDAATRGLKTALVEAGDFASGTSSKSTK-----LIHGGVRYLEK  122 (680)
T ss_pred             CcccEEEECCCccCcceeehhhcccceeEEEecccccCCccccchh-----hhcccHHHHHH
Confidence            4699999999999999999999999999999999987765444343     45777777765

>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G

Probab=98.50  E-value=1.7e-07  Score=68.15  Aligned_cols=32  Identities=31%  Similarity=0.643  Sum_probs=29.4

Q ss_pred             EECCChHHHHHHHHHHhCCCcEEEEccCCCCC
Q psy9141          11 IVGGGLVGSLSACMFAKNQYEVNLYEAREDIR   42 (379)
Q Consensus        11 IVGaGpaGl~~A~~La~~G~~V~viE~~~~~~   42 (379)
                      |||||++||++|+.|++.|++|+|+|+.+.+.
T Consensus         1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~G   32 (68)
T PF13450_consen    1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRLG   32 (68)
T ss_dssp             EES-SHHHHHHHHHHHHTTSEEEEEESSSSSS
T ss_pred             CEeeCHHHHHHHHHHHHCCCcEEEEecCcccC
Confidence            89999999999999999999999999998764

...

>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit

Probab=98.49  E-value=2.8e-06  Score=87.73  Aligned_cols=146  Identities=20%  Similarity=0.248  Sum_probs=79.7

Q ss_pred             cEEEECCChHHHHHHHHHH----hCCCcEEEEccCCCCCCCCCCCCc-ccccccCH----HHH-HHHH---HC--C----
Q psy9141           8 SVVIVGGGLVGSLSACMFA----KNQYEVNLYEAREDIRNSGLSEGK-SINLALSV----RGR-EALR---RI--G----   68 (379)
Q Consensus         8 dVvIVGaGpaGl~~A~~La----~~G~~V~viE~~~~~~~~~~~~g~-~i~~al~~----~~~-~~l~---~l--G----   68 (379)
                      ||+|||||.|||++|+.++    +.|.+|+|+||.......+..+|. +++..+..    .+. ..++   ..  |    
T Consensus         1 DVlVIGsG~AGL~AAl~Aa~~~~e~G~~VilieK~~~~~s~s~A~G~~gi~~~~~~~~g~Ds~e~~~~d~~~~~~gl~d~   80 (614)
T TIGR02061         1 DLLIVGGGMGGCGAAFEAVYWGDKKGLKIVLVEKANLERSGAVAQGLSAINTYLGTRFGENNAEDYVRYVRTDLMGLVRE   80 (614)
T ss_pred             CEEEECCCHHHHHHHHHHHhhhhhCCCeEEEEEccCCCCCCccccccchhhhhhhcccCCCCHHHHHHHHHHhcCCCCcH
Confidence            8999999999999999998    779999999998754332222221 12111210    001 1111   11  1    


Q ss_pred             ------------ChHHHHhCCCCceeeEEEecCCcEE-----EeeCCCC-CcH--HHHhcCCCCeEEeCceEEEEEecC-
Q psy9141          69 ------------LEDKLLAHGIPMRARMIHGQNGKLR-----EIPYDPV-HNQ--VELEQYPDCNIYFQHKLINLDVNS-  127 (379)
Q Consensus        69 ------------l~~~l~~~~~~~~~~~~~~~~g~~~-----~~~~~~~-~~~--~~~~~~~gv~i~~~~~v~~i~~~~-  127 (379)
                                  ..+.+.+.+.++..   ...+|...     ...++.. ..+  .......+++++.++.++++..++ 
T Consensus        81 ~lV~~lv~~s~~~i~~L~~~Gv~F~~---~~~~G~~~~~g~~~~~~gG~~~~r~l~~~l~~~~~~i~~~~~v~~Ll~d~~  157 (614)
T TIGR02061        81 DLIFDMARHVDDSVHLFEEWGLPLWI---KPEDGKYVREGRWQIMIHGESYKPIVAEAAKNALGDIFERIFIVKLLLDKN  157 (614)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCCcee---cCCCCccccCCCcccCcCchhHHHHHHHHHHhCCCeEEcccEEEEEEecCC
Confidence                        11223333444421   00122111     0011110 001  111222457999999999988754 


Q ss_pred             --Ce---EEEE-EccCCceeEEEeecEEEecCCCChH
Q psy9141         128 --GN---VTFY-RTEDNSETKITDNQLIIGADGAYSG  158 (379)
Q Consensus       128 --~~---v~v~-~~~~G~~~~~i~adlVV~AdG~~S~  158 (379)
                        +.   +.+. .. +|+..+ +.|+.||.|+|.++.
T Consensus       158 ~~GrV~Gv~~~~~~-~g~~~~-i~AkaVVLATGG~~~  192 (614)
T TIGR02061       158 TPNRIAGAVGFNVR-ANEVHV-FKAKTVIVAAGGAVN  192 (614)
T ss_pred             CCCeEEEEEEEEeC-CCcEEE-EECCEEEECCCcccc
Confidence              33   3332 34 677666 899999999999873

During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.

>TIGR02732 zeta_caro_desat carotene 7,8-desaturase

Probab=98.48  E-value=2.8e-06  Score=85.56  Aligned_cols=66  Identities=30%  Similarity=0.473  Sum_probs=48.1

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCC--C--CCCCccc----c--cccCHHHHHHHHHCCChHHH
Q psy9141           8 SVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNS--G--LSEGKSI----N--LALSVRGREALRRIGLEDKL   73 (379)
Q Consensus         8 dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~--~--~~~g~~i----~--~al~~~~~~~l~~lGl~~~l   73 (379)
                      +|+|||||++||++|+.|++.|++|+|+|+.+.....  +  ..+|..+    |  ....++..++++++|+.+.+
T Consensus         1 ~v~IiG~G~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~~~~~~g~~~d~G~~~~~~~~~~~~~~~~~lg~~~~~   76 (474)
T TIGR02732         1 KVAIVGAGLAGLSTAVELVDAGHEVDIYESRSFIGGKVGSWVDGDGNHIEMGLHVFFGCYANLFRLMKKVGAEDNL   76 (474)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCCceeeeeecCCCceEeeceEEecCchHHHHHHHHHcCCcccc
Confidence            5899999999999999999999999999999866421  0  0122211    1  12346788889999976554

Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.

>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed

Probab=98.48  E-value=2.8e-07  Score=89.99  Aligned_cols=109  Identities=22%  Similarity=0.320  Sum_probs=69.5

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCC----CCCCCcccccccCHHHHHHHHHCCChH-HHHhCCCCce
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNS----GLSEGKSINLALSVRGREALRRIGLED-KLLAHGIPMR   81 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~----~~~~g~~i~~al~~~~~~~l~~lGl~~-~l~~~~~~~~   81 (379)
                      .||+|||||++|+.+|+.|++.|++|+|+|+++.....    ...+.+..  +.+..+...+...|+|. ++...+..  
T Consensus         3 ~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~~~s~a~~~~~~~ervc--a~Slgs~~ll~a~Gll~~em~~lgsl--   78 (436)
T PRK05335          3 KPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPVKKTPAHHTDGFAELVC--SNSFRSDSLTNAVGLLKEEMRRLGSL--   78 (436)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCccCcccccCcccccccc--chhhhhhhHHhcCCchHHHHHHhcch--
Confidence            49999999999999999999999999999988765321    11223333  46677788899999887 34332221  


Q ss_pred             eeEEEecCCcEEEeeCC-CC-CcH--------HHHhcCCCCeEEeCceEEEEE
Q psy9141          82 ARMIHGQNGKLREIPYD-PV-HNQ--------VELEQYPDCNIYFQHKLINLD  124 (379)
Q Consensus        82 ~~~~~~~~g~~~~~~~~-~~-~~~--------~~~~~~~gv~i~~~~~v~~i~  124 (379)
                        .+...+  ....+.. .. ..+        +.+...++++++ ..+|+++.
T Consensus        79 --~~~aad--~~~vPA~gaLvvdR~~~~~~L~~~L~~~pnI~l~-~~eV~~l~  126 (436)
T PRK05335         79 --IMEAAD--AHRVPAGGALAVDREGFSEYVTEALENHPLITVI-REEVTEIP  126 (436)
T ss_pred             --heeccc--ccCCCCccceecCHHHHHHHHHHHHHcCCCcEEE-ccchhccc
Confidence              111110  0111111 11 111        455677899998 56888875

>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=98.48  E-value=2.8e-06  Score=87.23  Aligned_cols=44  Identities=20%  Similarity=0.268  Sum_probs=37.2

Q ss_pred             CCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCC
Q psy9141           5 SKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEG   49 (379)
Q Consensus         5 ~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g   49 (379)
                      .++||||||+| +|+++|+.+++.|.+|+||||.+.....+...|
T Consensus        15 ~e~DvvvvG~G-~G~~aA~~a~~~G~~v~v~Ek~~~~GG~~~~~g   58 (564)
T PRK12845         15 TTVDLLVVGSG-TGMAAALAAHELGLSVLIVEKSSYVGGSTARSG   58 (564)
T ss_pred             ceeCEEEECCc-HHHHHHHHHHHCCCcEEEEecCCCCcCcccCcC
Confidence            36899999999 899999999999999999999976654444444

>PRK14727 putative mercuric reductase; Provisional

Probab=98.48  E-value=5.9e-07  Score=90.62  Aligned_cols=38  Identities=24%  Similarity=0.254  Sum_probs=34.5

Q ss_pred             CCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCC
Q psy9141           5 SKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIR   42 (379)
Q Consensus         5 ~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~   42 (379)
                      .++||+||||||+|+++|..|++.|.+|+|+|+.....
T Consensus        15 ~~~dvvvIG~G~aG~~~a~~~~~~g~~v~~ie~~~~~G   52 (479)
T PRK14727         15 LQLHVAIIGSGSAAFAAAIKAAEHGARVTIIEGADVIG   52 (479)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccCcce
Confidence            46999999999999999999999999999999875443

>PRK13512 coenzyme A disulfide reductase; Provisional

Probab=98.45  E-value=1.7e-06  Score=86.34  Aligned_cols=114  Identities=14%  Similarity=0.230  Sum_probs=73.5

Q ss_pred             cEEEECCChHHHHHHHHHHhC--CCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeEE
Q psy9141           8 SVVIVGGGLVGSLSACMFAKN--QYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARMI   85 (379)
Q Consensus         8 dVvIVGaGpaGl~~A~~La~~--G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~~   85 (379)
                      +|+|||||++|+.+|..|++.  +.+|+|||+.+.....    .-+    + +..   +.  +...              
T Consensus         3 ~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~~~~~----~~~----l-p~~---~~--~~~~--------------   54 (438)
T PRK13512          3 KIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMSFA----NCA----L-PYY---IG--EVVE--------------   54 (438)
T ss_pred             eEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCCcccc----cCC----c-chh---hc--CccC--------------
Confidence            799999999999999999887  6799999998754311    100    0 000   00  0000              


Q ss_pred             EecCCcEEEeeCCCCCcHHHHhcCCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEEEecCCCChH
Q psy9141          86 HGQNGKLREIPYDPVHNQVELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAYSG  158 (379)
Q Consensus        86 ~~~~g~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlVV~AdG~~S~  158 (379)
                          .....+++.    .....+..+++++.+++|++|+.++..+.+....+++..+ +++|.||.|+|....
T Consensus        55 ----~~~~~~~~~----~~~~~~~~~i~v~~~~~V~~Id~~~~~v~~~~~~~~~~~~-~~yd~lviAtGs~~~  118 (438)
T PRK13512         55 ----DRKYALAYT----PEKFYDRKQITVKTYHEVIAINDERQTVTVLNRKTNEQFE-ESYDKLILSPGASAN  118 (438)
T ss_pred             ----CHHHcccCC----HHHHHHhCCCEEEeCCEEEEEECCCCEEEEEECCCCcEEe-eecCEEEECCCCCCC
Confidence                000000110    0223334689999999999999988888877541234434 789999999998863

>PLN02487 zeta-carotene desaturase

Probab=98.45  E-value=4.8e-06  Score=85.17  Aligned_cols=68  Identities=26%  Similarity=0.485  Sum_probs=50.8

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCC-C-C--CCCc----cccc--ccCHHHHHHHHHCCChHHHH
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNS-G-L--SEGK----SINL--ALSVRGREALRRIGLEDKLL   74 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~-~-~--~~g~----~i~~--al~~~~~~~l~~lGl~~~l~   74 (379)
                      .+|+|||||++||++|+.|++.|++|+|+|+.+..... . .  .+|.    +.|.  ...++..++++++|+.+++.
T Consensus        76 ~~v~iiG~G~~Gl~~a~~L~~~g~~v~i~E~~~~~gG~~~s~~~~~g~~~e~G~h~~~~~~~~~~~ll~~LGl~~~~~  153 (569)
T PLN02487         76 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRPFIGGKVGSFVDKNGNHIEMGLHVFFGCYNNLFRLMKKVGADENLL  153 (569)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCeeEEEecCCCCCCceeeeeecCCcEEecceeEecCCcHHHHHHHHhcCCccccc
Confidence            58999999999999999999999999999999876421 0 0  1222    1111  13477899999999876543

>KOG1335|consensus

Probab=98.44  E-value=7.7e-07  Score=83.90  Aligned_cols=57  Identities=9%  Similarity=0.039  Sum_probs=44.9

Q ss_pred             HHHhcCCCCeEEeCceEEEEEecCC-eEEEEEc--cCCceeEEEeecEEEecCCCChHHHH
Q psy9141         104 VELEQYPDCNIYFQHKLINLDVNSG-NVTFYRT--EDNSETKITDNQLIIGADGAYSGVRK  161 (379)
Q Consensus       104 ~~~~~~~gv~i~~~~~v~~i~~~~~-~v~v~~~--~~G~~~~~i~adlVV~AdG~~S~vr~  161 (379)
                      .+..+..+++++++++|+.++.+++ .+.+.+.  .+|+..+ ++||.+..|.|+..-+..
T Consensus       259 qr~L~kQgikF~l~tkv~~a~~~~dg~v~i~ve~ak~~k~~t-le~DvlLVsiGRrP~t~G  318 (506)
T KOG1335|consen  259 QRVLQKQGIKFKLGTKVTSATRNGDGPVEIEVENAKTGKKET-LECDVLLVSIGRRPFTEG  318 (506)
T ss_pred             HHHHHhcCceeEeccEEEEeeccCCCceEEEEEecCCCceeE-EEeeEEEEEccCcccccC
Confidence            3455567999999999999999887 5665543  3667667 999999999999876554

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

Probab=98.44  E-value=2.4e-06  Score=84.11  Aligned_cols=109  Identities=17%  Similarity=0.235  Sum_probs=70.6

Q ss_pred             CCCcEEEECCChHHHHHHHHHHhCCC--cEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCcee
Q psy9141           5 SKKSVVIVGGGLVGSLSACMFAKNQY--EVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRA   82 (379)
Q Consensus         5 ~~~dVvIVGaGpaGl~~A~~La~~G~--~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~   82 (379)
                      ++.+|+|||||++|+.+|..|++.|.  +|+|+++.+....     .+.   .++   ..++          ....  ..
T Consensus         2 ~~~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~~~~y-----~r~---~l~---~~~~----------~~~~--~~   58 (396)
T PRK09754          2 KEKTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHLPY-----ERP---PLS---KSML----------LEDS--PQ   58 (396)
T ss_pred             CcCcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCCCCCC-----CCC---CCC---HHHH----------CCCC--cc
Confidence            45689999999999999999999987  7999998764321     110   011   0111          0000  00


Q ss_pred             eEEEecCCcEEEeeCCCCCcHHHHhcCCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEEEecCCCCh
Q psy9141          83 RMIHGQNGKLREIPYDPVHNQVELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAYS  157 (379)
Q Consensus        83 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlVV~AdG~~S  157 (379)
                      ..            +...   .......+++++.++.|+.++.+...  +.+. +|++   +.+|.||.|+|...
T Consensus        59 ~~------------~~~~---~~~~~~~~i~~~~g~~V~~id~~~~~--v~~~-~g~~---~~yd~LViATGs~~  112 (396)
T PRK09754         59 LQ------------QVLP---ANWWQENNVHLHSGVTIKTLGRDTRE--LVLT-NGES---WHWDQLFIATGAAA  112 (396)
T ss_pred             cc------------ccCC---HHHHHHCCCEEEcCCEEEEEECCCCE--EEEC-CCCE---EEcCEEEEccCCCC
Confidence            00            0000   11112358999999999999876544  4455 7877   99999999999886

>PTZ00058 glutathione reductase; Provisional

Probab=98.43  E-value=6.1e-07  Score=91.75  Aligned_cols=35  Identities=29%  Similarity=0.360  Sum_probs=33.0

Q ss_pred             CCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCC
Q psy9141           5 SKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEARE   39 (379)
Q Consensus         5 ~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~   39 (379)
                      .+|||+||||||+|.++|..+++.|.+|+|||+..
T Consensus        47 ~~yDvvVIG~G~aG~~aA~~aa~~G~~ValIEk~~   81 (561)
T PTZ00058         47 MVYDLIVIGGGSGGMAAARRAARNKAKVALVEKDY   81 (561)
T ss_pred             ccccEEEECcCHHHHHHHHHHHHcCCeEEEEeccc
Confidence            46999999999999999999999999999999874

>PRK12843 putative FAD-binding dehydrogenase; Reviewed

Probab=98.43  E-value=3.1e-06  Score=87.37  Aligned_cols=39  Identities=26%  Similarity=0.336  Sum_probs=35.1

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCC
Q psy9141           6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNS   44 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~   44 (379)
                      ++||+|||+|++|+++|+.+++.|.+|+||||.+.....
T Consensus        16 ~~dvvvvG~G~aG~~aa~~~~~~g~~v~l~ek~~~~gg~   54 (578)
T PRK12843         16 EFDVIVIGAGAAGMSAALFAAIAGLKVLLVERTEYVGGT   54 (578)
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCc
Confidence            579999999999999999999999999999998765433

>PRK07845 flavoprotein disulfide reductase; Reviewed

Probab=98.42  E-value=1.1e-06  Score=88.26  Aligned_cols=133  Identities=17%  Similarity=0.186  Sum_probs=74.3

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHH---hCCCCceeeE
Q psy9141           8 SVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLL---AHGIPMRARM   84 (379)
Q Consensus         8 dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~---~~~~~~~~~~   84 (379)
                      ||+||||||+|+.+|..+++.|.+|+|+|+.+....   +-.++   ++  .+..+++...+.+.+.   ..+....   
T Consensus         3 ~vvviG~G~~G~~~a~~~~~~g~~v~~~e~~~~gG~---c~~~g---ci--PsK~l~~~a~~~~~~~~~~~~g~~~~---   71 (466)
T PRK07845          3 RIVIIGGGPGGYEAALVAAQLGADVTVIERDGLGGA---AVLTD---CV--PSKTLIATAEVRTELRRAAELGIRFI---   71 (466)
T ss_pred             cEEEECCCHHHHHHHHHHHhCCCeEEEEEccCCCCc---ccccC---Cc--chHHHHHHHHHHHHHHHHHhCCcccc---
Confidence            899999999999999999999999999998753211   11111   11  1222232211112111   1111100   


Q ss_pred             EEecCCcEEEeeCCCCCc------------HHHHhcCCCCeEEeCceEEEEE--ecCCeEEEEEccCCceeEEEeecEEE
Q psy9141          85 IHGQNGKLREIPYDPVHN------------QVELEQYPDCNIYFQHKLINLD--VNSGNVTFYRTEDNSETKITDNQLII  150 (379)
Q Consensus        85 ~~~~~g~~~~~~~~~~~~------------~~~~~~~~gv~i~~~~~v~~i~--~~~~~v~v~~~~~G~~~~~i~adlVV  150 (379)
                         ..+. ..+++.....            .....+..+++++.++ ++.++  .+++.+++.+. +|+..+ +.+|.||
T Consensus        72 ---~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~g~-~~~~~~~~~~~~v~V~~~-~g~~~~-~~~d~lV  144 (466)
T PRK07845         72 ---DDGE-ARVDLPAVNARVKALAAAQSADIRARLEREGVRVIAGR-GRLIDPGLGPHRVKVTTA-DGGEET-LDADVVL  144 (466)
T ss_pred             ---cCcc-cccCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEE-EEEeecccCCCEEEEEeC-CCceEE-EecCEEE
Confidence               0000 0011110000            0122233589998874 33333  45677888877 776334 9999999


Q ss_pred             ecCCCChH
Q psy9141         151 GADGAYSG  158 (379)
Q Consensus       151 ~AdG~~S~  158 (379)
                      .|+|....
T Consensus       145 iATGs~p~  152 (466)
T PRK07845        145 IATGASPR  152 (466)
T ss_pred             EcCCCCCC
Confidence            99999864

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=98.42  E-value=5.4e-06  Score=89.75  Aligned_cols=36  Identities=28%  Similarity=0.400  Sum_probs=33.7

Q ss_pred             CCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCC
Q psy9141           5 SKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEARED   40 (379)
Q Consensus         5 ~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~   40 (379)
                      .++||+|||||.|||++|+.+++.|.+|+|+||.+.
T Consensus        12 ~~~DVlVVG~G~AGl~AAl~Aa~~G~~V~lleK~~~   47 (897)
T PRK13800         12 LDCDVLVIGGGTAGTMAALTAAEHGANVLLLEKAHV   47 (897)
T ss_pred             eecCEEEECcCHHHHHHHHHHHHCCCeEEEEecccc
Confidence            358999999999999999999999999999999875

>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ

Probab=98.41  E-value=2.9e-06  Score=84.54  Aligned_cols=54  Identities=15%  Similarity=0.159  Sum_probs=39.2

Q ss_pred             hcCCCCeEEeCceEEEEEec--CCeEE-EEEccCCceeEEEeecEEEecCCCChHHHHHh
Q psy9141         107 EQYPDCNIYFQHKLINLDVN--SGNVT-FYRTEDNSETKITDNQLIIGADGAYSGVRKCL  163 (379)
Q Consensus       107 ~~~~gv~i~~~~~v~~i~~~--~~~v~-v~~~~~G~~~~~i~adlVV~AdG~~S~vr~~l  163 (379)
                      .+..+++|+++++|+++..+  ++.+. +... ++. .+ +.|+.||.|+|.++.-++++
T Consensus       133 a~~~Gv~i~~~~~v~~l~~~~~~g~v~gv~~~-~~~-~~-i~ak~VIlAtGG~~~n~~~~  189 (432)
T TIGR02485       133 AERLGVEIRYGIAVDRIPPEAFDGAHDGPLTT-VGT-HR-ITTQALVLAAGGLGANRDWL  189 (432)
T ss_pred             HHHcCCEEEeCCEEEEEEecCCCCeEEEEEEc-CCc-EE-EEcCEEEEcCCCcccCHHHH
Confidence            34468999999999999876  34443 3333 332 23 89999999999998766655

CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).

>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

Probab=98.38  E-value=1.1e-06  Score=87.14  Aligned_cols=138  Identities=15%  Similarity=0.146  Sum_probs=77.6

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceee
Q psy9141           4 NSKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRAR   83 (379)
Q Consensus         4 m~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~   83 (379)
                      |.+||++||||||+|..+|..+++.|.+|+++|+.......  +-..+   ++  .+..++....+.+.+..... ..++
T Consensus         2 ~~~yDvvVIG~GpaG~~aA~raa~~G~kvalvE~~~~lGGt--Cln~G---CI--PsK~Ll~~a~~~~~~~~~~~-~~Gi   73 (454)
T COG1249           2 MKEYDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGERLGGT--CLNVG---CI--PSKALLHAAEVIEEARHAAK-EYGI   73 (454)
T ss_pred             CccccEEEECCCHHHHHHHHHHHhCCCCEEEEeecCCcCce--EEeeC---cc--ccHHHHHHHHHHHHHhhccc-ccce
Confidence            45799999999999999999999999999999999633211  11221   22  23333333322222221110 1111


Q ss_pred             EEEecCCcEEEeeCCCCCc------------HHHHhcCCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEEEe
Q psy9141          84 MIHGQNGKLREIPYDPVHN------------QVELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIG  151 (379)
Q Consensus        84 ~~~~~~g~~~~~~~~~~~~------------~~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlVV~  151 (379)
                      .....     .++|.....            .+.+.+..+++++.++.-  + .++..+.|... +.++   ++|+.+|.
T Consensus        74 ~~~~~-----~id~~~~~~~k~~v~~~~~~~~~~l~~~~~V~vi~G~a~--f-~~~~~v~V~~~-~~~~---~~a~~iiI  141 (454)
T COG1249          74 SAEVP-----KIDFEKLLARKDKVVRLLTGGVEGLLKKNGVDVIRGEAR--F-VDPHTVEVTGE-DKET---ITADNIII  141 (454)
T ss_pred             ecCCC-----CcCHHHHHHHHHHHHHHHhhhHHHHHhhCCCEEEEEEEE--E-CCCCEEEEcCC-CceE---EEeCEEEE
Confidence            11100     111111100            034455568998887431  1 12556666532 2344   99999999


Q ss_pred             cCCCChHHHH
Q psy9141         152 ADGAYSGVRK  161 (379)
Q Consensus       152 AdG~~S~vr~  161 (379)
                      |+|.+.....
T Consensus       142 ATGS~p~~~~  151 (454)
T COG1249         142 ATGSRPRIPP  151 (454)
T ss_pred             cCCCCCcCCC
Confidence            9999975443

>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]

Probab=98.34  E-value=3.4e-06  Score=86.02  Aligned_cols=42  Identities=26%  Similarity=0.276  Sum_probs=37.6

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCC
Q psy9141           4 NSKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSG   45 (379)
Q Consensus         4 m~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~   45 (379)
                      +.++||+|||||.|||.+|+.+++.|.+|+|+||....+..+
T Consensus         4 ~~~~DvvVIG~G~AGl~AAi~aa~~g~~V~l~~K~~~~rg~t   45 (562)
T COG1053           4 IHEFDVVVIGGGGAGLRAAIEAAEAGLKVALLSKAPPKRGHT   45 (562)
T ss_pred             cccCCEEEECCcHHHHHHHHHHHhcCCcEEEEEccccCCCch
Confidence            457899999999999999999999999999999998766443

>PRK12839 hypothetical protein; Provisional

Probab=98.32  E-value=5.9e-06  Score=85.02  Aligned_cols=39  Identities=26%  Similarity=0.212  Sum_probs=35.2

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCC
Q psy9141           4 NSKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIR   42 (379)
Q Consensus         4 m~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~   42 (379)
                      ..++||+|||+|++|+++|+.+++.|.+|+||||.....
T Consensus         6 ~~~~dv~ViG~G~aG~~aa~~~~~~g~~v~~iek~~~~g   44 (572)
T PRK12839          6 THTYDVVVVGSGAGGLSAAVAAAYGGAKVLVVEKASTCG   44 (572)
T ss_pred             CCcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCC
Confidence            347899999999999999999999999999999987544

>PRK09564 coenzyme A disulfide reductase; Reviewed

Probab=98.31  E-value=4.5e-06  Score=83.35  Aligned_cols=113  Identities=17%  Similarity=0.255  Sum_probs=70.5

Q ss_pred             cEEEECCChHHHHHHHHHHhCC--CcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeEE
Q psy9141           8 SVVIVGGGLVGSLSACMFAKNQ--YEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARMI   85 (379)
Q Consensus         8 dVvIVGaGpaGl~~A~~La~~G--~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~~   85 (379)
                      +|+|||||++|+++|..|++.+  .+|+|||+.+.....    .                 .++         +......
T Consensus         2 ~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~~~~~----~-----------------~~~---------~~~~~~~   51 (444)
T PRK09564          2 KIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIVSFG----A-----------------CGL---------PYFVGGF   51 (444)
T ss_pred             eEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCcceee----c-----------------CCC---------ceEeccc
Confidence            6999999999999999999875  589999988744211    0                 000         0000000


Q ss_pred             EecCCcEEEeeCCCCCcHHHHhcCCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEEEecCCCChH
Q psy9141          86 HGQNGKLREIPYDPVHNQVELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAYSG  158 (379)
Q Consensus        86 ~~~~g~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlVV~AdG~~S~  158 (379)
                      ......   . ....  ...+. ..+++++.+++|++++.++..+++....+|++.+ +.+|.||.|+|....
T Consensus        52 ~~~~~~---~-~~~~--~~~~~-~~gv~~~~~~~V~~id~~~~~v~~~~~~~~~~~~-~~yd~lviAtG~~~~  116 (444)
T PRK09564         52 FDDPNT---M-IART--PEEFI-KSGIDVKTEHEVVKVDAKNKTITVKNLKTGSIFN-DTYDKLMIATGARPI  116 (444)
T ss_pred             cCCHHH---h-hcCC--HHHHH-HCCCeEEecCEEEEEECCCCEEEEEECCCCCEEE-ecCCEEEECCCCCCC
Confidence            000000   0 0001  02233 3589999999999999888888776431355522 349999999999753

>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional

Probab=98.31  E-value=7.1e-06  Score=80.21  Aligned_cols=100  Identities=16%  Similarity=0.241  Sum_probs=74.0

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeEEE
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARMIH   86 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~   86 (379)
                      .+|+|||||+.|+-+|..|++.|.+|+++|+.+....      +    .+.+.....+                      
T Consensus       142 ~~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~~~~l~------~----~~~~~~~~~l----------------------  189 (377)
T PRK04965        142 QRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAASLLA------S----LMPPEVSSRL----------------------  189 (377)
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCcccc------h----hCCHHHHHHH----------------------
Confidence            4799999999999999999999999999998753311      0    0111100000                      


Q ss_pred             ecCCcEEEeeCCCCCcHHHHhcCCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEEEecCCCChHH
Q psy9141          87 GQNGKLREIPYDPVHNQVELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAYSGV  159 (379)
Q Consensus        87 ~~~g~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlVV~AdG~~S~v  159 (379)
                                       ....+..++++++++++++++.+++.+.+.+. +|++   +.+|+||.|+|..+..
T Consensus       190 -----------------~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~-~g~~---i~~D~vI~a~G~~p~~  241 (377)
T PRK04965        190 -----------------QHRLTEMGVHLLLKSQLQGLEKTDSGIRATLD-SGRS---IEVDAVIAAAGLRPNT  241 (377)
T ss_pred             -----------------HHHHHhCCCEEEECCeEEEEEccCCEEEEEEc-CCcE---EECCEEEECcCCCcch
Confidence                             11122358999999999999887777788888 8887   9999999999987643

>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit

Probab=98.30  E-value=1.6e-05  Score=77.85  Aligned_cols=50  Identities=10%  Similarity=0.128  Sum_probs=39.2

Q ss_pred             hcCCCCeEEeCceEEEEEecCCeEEE-EEccCCceeEEEeecEEEecCCCC-hH
Q psy9141         107 EQYPDCNIYFQHKLINLDVNSGNVTF-YRTEDNSETKITDNQLIIGADGAY-SG  158 (379)
Q Consensus       107 ~~~~gv~i~~~~~v~~i~~~~~~v~v-~~~~~G~~~~~i~adlVV~AdG~~-S~  158 (379)
                      .+..|++++.+++|++++.++++++. ... ++...+ ++||.||.|+|+| |.
T Consensus       273 ~~~~Gg~il~g~~V~~i~~~~~~v~~V~t~-~g~~~~-l~AD~vVLAaGaw~S~  324 (419)
T TIGR03378       273 FEQLGGVMLPGDRVLRAEFEGNRVTRIHTR-NHRDIP-LRADHFVLASGSFFSN  324 (419)
T ss_pred             HHHCCCEEEECcEEEEEEeeCCeEEEEEec-CCccce-EECCEEEEccCCCcCH
Confidence            34568999999999999988887774 445 552223 9999999999999 84

Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.

>TIGR02462 pyranose_ox pyranose oxidase

Probab=98.25  E-value=2e-05  Score=79.99  Aligned_cols=36  Identities=22%  Similarity=0.269  Sum_probs=34.0

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCC
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIR   42 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~   42 (379)
                      |||+|||+||+|+.+|..|++.|++|+|||+.....
T Consensus         1 ~dv~ivg~Gp~G~~~a~~l~~~g~~v~~~e~~~~~~   36 (544)
T TIGR02462         1 YDVFIAGSGPIGCTYARLCVDAGLKVAMVEIGAADS   36 (544)
T ss_pred             CcEEEECCchHHHHHHHHHHHCCCeEEEEeccCccC
Confidence            699999999999999999999999999999998665

Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

Probab=98.24  E-value=1.5e-05  Score=78.50  Aligned_cols=99  Identities=17%  Similarity=0.207  Sum_probs=72.3

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeEEE
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARMIH   86 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~   86 (379)
                      .+|+|||+|++|+-+|..|++.|.+|+|+|+.+.+..      +    ...+...+.+                      
T Consensus       145 ~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~------~----~~~~~~~~~l----------------------  192 (396)
T PRK09754        145 RSVVIVGAGTIGLELAASATQRRCKVTVIELAATVMG------R----NAPPPVQRYL----------------------  192 (396)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCcchh------h----hcCHHHHHHH----------------------
Confidence            4799999999999999999999999999998763311      0    0111110000                      


Q ss_pred             ecCCcEEEeeCCCCCcHHHHhcCCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEEEecCCCChHH
Q psy9141          87 GQNGKLREIPYDPVHNQVELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAYSGV  159 (379)
Q Consensus        87 ~~~g~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlVV~AdG~~S~v  159 (379)
                                       ....+..++++++++++++++. ++.+.+.+. +|++   +.+|+||.|.|.....
T Consensus       193 -----------------~~~l~~~GV~i~~~~~V~~i~~-~~~~~v~l~-~g~~---i~aD~Vv~a~G~~pn~  243 (396)
T PRK09754        193 -----------------LQRHQQAGVRILLNNAIEHVVD-GEKVELTLQ-SGET---LQADVVIYGIGISAND  243 (396)
T ss_pred             -----------------HHHHHHCCCEEEeCCeeEEEEc-CCEEEEEEC-CCCE---EECCEEEECCCCChhh
Confidence                             1111235899999999999876 556677787 8887   9999999999998764

>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form

Probab=98.24  E-value=2e-05  Score=86.10  Aligned_cols=37  Identities=24%  Similarity=0.307  Sum_probs=34.3

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCC
Q psy9141           6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIR   42 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~   42 (379)
                      .+||+|||||||||++|+.|++.|++|+|+|+.+...
T Consensus       163 ~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~~G  199 (985)
T TIGR01372       163 HCDVLVVGAGPAGLAAALAAARAGARVILVDEQPEAG  199 (985)
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCC
Confidence            5799999999999999999999999999999987654

This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>TIGR01423 trypano_reduc trypanothione-disulfide reductase

Probab=98.23  E-value=6.7e-06  Score=82.99  Aligned_cols=34  Identities=18%  Similarity=0.219  Sum_probs=31.9

Q ss_pred             CCCcEEEECCChHHHHHHHHHHhC-CCcEEEEccC
Q psy9141           5 SKKSVVIVGGGLVGSLSACMFAKN-QYEVNLYEAR   38 (379)
Q Consensus         5 ~~~dVvIVGaGpaGl~~A~~La~~-G~~V~viE~~   38 (379)
                      ++|||+||||||+|..+|..+++. |.+|+|||+.
T Consensus         2 ~~~DviVIG~G~~G~~aA~~aa~~~g~~V~lie~~   36 (486)
T TIGR01423         2 KAFDLVVIGAGSGGLEAGWNAATLYKKRVAVIDVQ   36 (486)
T ss_pred             CccCEEEECCChHHHHHHHHHHHhcCCEEEEEecc
Confidence            479999999999999999999996 9999999984

Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.

>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein

Probab=98.22  E-value=6.4e-06  Score=83.16  Aligned_cols=33  Identities=24%  Similarity=0.276  Sum_probs=31.6

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCcEEEEccC
Q psy9141           6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAR   38 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~   38 (379)
                      +|||+||||||+|+.+|..+++.|.+|++||+.
T Consensus         2 ~yDvvVIG~G~aG~~aA~~aa~~G~~v~lie~~   34 (484)
T TIGR01438         2 DYDLIVIGGGSGGLAAAKEAADYGAKVMLLDFV   34 (484)
T ss_pred             ccCEEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence            589999999999999999999999999999974

This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.

>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]

Probab=98.19  E-value=2.6e-05  Score=73.00  Aligned_cols=65  Identities=17%  Similarity=0.447  Sum_probs=46.7

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCC--CC---CCCccccc---------ccCHHHHHHHHHCCChH
Q psy9141           6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNS--GL---SEGKSINL---------ALSVRGREALRRIGLED   71 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~--~~---~~g~~i~~---------al~~~~~~~l~~lGl~~   71 (379)
                      ..+|+|||+|++||++|+.|+++ ++|+++|.+......  ..   -++.++.+         -..|+-.++++.+|+..
T Consensus         8 r~~IAVIGsGisGLSAA~~Ls~r-hdVTLfEA~~rlGGha~Tv~~~~d~~g~~vDtGfiVyn~~tYpnl~~Lf~~iGv~t   86 (447)
T COG2907           8 RRKIAVIGSGISGLSAAWLLSRR-HDVTLFEADRRLGGHANTVAGNTDGGGVFVDTGFIVYNERTYPNLTRLFKTIGVDT   86 (447)
T ss_pred             CcceEEEcccchhhhhHHhhhcc-cceEEEeccccccCccceeeccccCCceeecceeEEecCCCcchHHHHHHHcCCCC
Confidence            45899999999999999999886 699999998765422  11   13333210         13577889999998743

>PLN02546 glutathione reductase

Probab=98.18  E-value=9.5e-06  Score=83.08  Aligned_cols=32  Identities=13%  Similarity=0.131  Sum_probs=31.0

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCcEEEEcc
Q psy9141           6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEA   37 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~   37 (379)
                      +|||+||||||+|..+|..+++.|.+|+|+|+
T Consensus        79 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~  110 (558)
T PLN02546         79 DFDLFTIGAGSGGVRASRFASNFGASAAVCEL  110 (558)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCeEEEEec
Confidence            58999999999999999999999999999996

>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated

Probab=98.16  E-value=7.6e-06  Score=82.15  Aligned_cols=33  Identities=30%  Similarity=0.492  Sum_probs=31.1

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEccCCC
Q psy9141           8 SVVIVGGGLVGSLSACMFAKNQYEVNLYEARED   40 (379)
Q Consensus         8 dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~   40 (379)
                      +|+||||||+|+++|..+++.|.+|+|||+.+.
T Consensus         2 ~vvVIG~G~aG~~aA~~~~~~g~~V~lie~~~~   34 (458)
T PRK06912          2 KLVVIGGGPAGYVAAITAAQNGKNVTLIDEADL   34 (458)
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCcEEEEECCcc
Confidence            699999999999999999999999999998753

>PRK07208 hypothetical protein; Provisional

Probab=98.16  E-value=2.5e-06  Score=86.08  Aligned_cols=39  Identities=38%  Similarity=0.516  Sum_probs=35.3

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCC
Q psy9141           4 NSKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIR   42 (379)
Q Consensus         4 m~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~   42 (379)
                      |+..||+|||||++||++|+.|+++|++|+|+|+++...
T Consensus         2 ~~~~~vvIiGaGisGL~aA~~L~~~g~~v~v~E~~~~~G   40 (479)
T PRK07208          2 TNKKSVVIIGAGPAGLTAAYELLKRGYPVTVLEADPVVG   40 (479)
T ss_pred             CCCCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCC
Confidence            456799999999999999999999999999999987654

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional

Probab=98.13  E-value=4.6e-05  Score=79.74  Aligned_cols=36  Identities=28%  Similarity=0.510  Sum_probs=33.5

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCC
Q psy9141           6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDI   41 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~   41 (379)
                      ..+|+||||||+|+++|..|++.|++|+|+|+.+..
T Consensus       193 ~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~  228 (652)
T PRK12814        193 GKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQA  228 (652)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence            468999999999999999999999999999998754

>PRK06292 dihydrolipoamide dehydrogenase; Validated

Probab=98.10  E-value=3e-06  Score=85.09  Aligned_cols=35  Identities=31%  Similarity=0.353  Sum_probs=32.8

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHhCCCcEEEEccC
Q psy9141           4 NSKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAR   38 (379)
Q Consensus         4 m~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~   38 (379)
                      |.+|||+||||||+|+++|..|++.|.+|+|||+.
T Consensus         1 m~~yDvvIIG~G~aGl~aA~~l~~~g~~v~lie~~   35 (460)
T PRK06292          1 MEKYDVIVIGAGPAGYVAARRAAKLGKKVALIEKG   35 (460)
T ss_pred             CCcccEEEECCCHHHHHHHHHHHHCCCeEEEEeCC
Confidence            45699999999999999999999999999999984

>KOG2844|consensus

Probab=98.10  E-value=2.6e-05  Score=78.44  Aligned_cols=56  Identities=9%  Similarity=0.112  Sum_probs=43.0

Q ss_pred             HHHhcCCCCeEEeCceEEEEEecCCe-EEEEEccCCceeEEEeecEEEecCCCChHHHHHhh
Q psy9141         104 VELEQYPDCNIYFQHKLINLDVNSGN-VTFYRTEDNSETKITDNQLIIGADGAYSGVRKCLM  164 (379)
Q Consensus       104 ~~~~~~~gv~i~~~~~v~~i~~~~~~-v~v~~~~~G~~~~~i~adlVV~AdG~~S~vr~~l~  164 (379)
                      ...++..|+.|..++.|+++....+. +-|.+. -|.    |++..||.|+|.|...-..+.
T Consensus       194 a~~A~~~GA~viE~cpV~~i~~~~~~~~gVeT~-~G~----iet~~~VNaaGvWAr~Vg~m~  250 (856)
T KOG2844|consen  194 ARAASALGALVIENCPVTGLHVETDKFGGVETP-HGS----IETECVVNAAGVWAREVGAMA  250 (856)
T ss_pred             HHHHHhcCcEEEecCCcceEEeecCCccceecc-Ccc----eecceEEechhHHHHHhhhhc
Confidence            34566679999999999999776553 457776 787    899999999999985444443

>TIGR03452 mycothione_red mycothione reductase

Probab=98.09  E-value=1.6e-05  Score=79.73  Aligned_cols=33  Identities=15%  Similarity=0.219  Sum_probs=28.2

Q ss_pred             CCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCC
Q psy9141           5 SKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEARE   39 (379)
Q Consensus         5 ~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~   39 (379)
                      ++||++|||+||+|..+|.  +..|.+|++||+..
T Consensus         1 ~~yD~vvIG~G~~g~~aa~--~~~g~~V~lie~~~   33 (452)
T TIGR03452         1 RHYDLIIIGTGSGNSIPDP--RFADKRIAIVEKGT   33 (452)
T ss_pred             CCcCEEEECCCHHHHHHHH--HHCCCeEEEEeCCC
Confidence            3699999999999988864  45799999999865

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.

>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase

Probab=98.09  E-value=5.1e-06  Score=81.65  Aligned_cols=66  Identities=27%  Similarity=0.352  Sum_probs=45.9

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCc--ccccccCHHHHHHHHHCCChHH
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGK--SINLALSVRGREALRRIGLEDK   72 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~--~i~~al~~~~~~~l~~lGl~~~   72 (379)
                      +||+|||||++|+.+|+.|++.|++|+|+|+++.........+.  ......+..+..+++..|+|.+
T Consensus         1 ~~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~~~~p~~~~~~~~elvcs~Slgg~~l~~a~Gil~~   68 (433)
T TIGR00137         1 TPVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPEKLTPAHHTEDLAELVCSNSLGAKALDRAAGLLKT   68 (433)
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCcEEEEeccccccCchhhhhhhhhhcccccccchhHHhccCcHHH
Confidence            48999999999999999999999999999988754321000000  0111234456677788887754

This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.

>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

Probab=98.09  E-value=4.2e-05  Score=76.06  Aligned_cols=104  Identities=23%  Similarity=0.273  Sum_probs=79.0

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeEEE
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARMIH   86 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~   86 (379)
                      ..++|||||+.|+-+|..+++.|.+|+|+|+.+..-..           ..+...+.+.                     
T Consensus       174 ~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~iLp~-----------~D~ei~~~~~---------------------  221 (454)
T COG1249         174 KSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRILPG-----------EDPEISKELT---------------------  221 (454)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCCc-----------CCHHHHHHHH---------------------
Confidence            47999999999999999999999999999999755321           1111111110                     


Q ss_pred             ecCCcEEEeeCCCCCcHHHHhcCCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEEEecCCCChHHHHH
Q psy9141          87 GQNGKLREIPYDPVHNQVELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAYSGVRKC  162 (379)
Q Consensus        87 ~~~g~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlVV~AdG~~S~vr~~  162 (379)
                                       ..+.+ .+++++.+++++.++..++++.+.++ +|+..+ +++|.|+.|.|+...+-..
T Consensus       222 -----------------~~l~~-~gv~i~~~~~v~~~~~~~~~v~v~~~-~g~~~~-~~ad~vLvAiGR~Pn~~~L  277 (454)
T COG1249         222 -----------------KQLEK-GGVKILLNTKVTAVEKKDDGVLVTLE-DGEGGT-IEADAVLVAIGRKPNTDGL  277 (454)
T ss_pred             -----------------HHHHh-CCeEEEccceEEEEEecCCeEEEEEe-cCCCCE-EEeeEEEEccCCccCCCCC
Confidence                             12333 57899999999999988877888887 776323 8999999999999887754

>PRK05976 dihydrolipoamide dehydrogenase; Validated

Probab=98.08  E-value=5.3e-05  Score=76.35  Aligned_cols=102  Identities=24%  Similarity=0.302  Sum_probs=71.3

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeEEE
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARMIH   86 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~   86 (379)
                      .+|+|||||++|+-+|..|++.|.+|+++|+.+.....           ..+...+.+.                     
T Consensus       181 ~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~il~~-----------~~~~~~~~l~---------------------  228 (472)
T PRK05976        181 KSLVIVGGGVIGLEWASMLADFGVEVTVVEAADRILPT-----------EDAELSKEVA---------------------  228 (472)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCeEEEEEecCccCCc-----------CCHHHHHHHH---------------------
Confidence            58999999999999999999999999999988643210           0111111110                     


Q ss_pred             ecCCcEEEeeCCCCCcHHHHhcCCCCeEEeCceEEEEEe-cCCeEE-EEEccCCceeEEEeecEEEecCCCChHHH
Q psy9141          87 GQNGKLREIPYDPVHNQVELEQYPDCNIYFQHKLINLDV-NSGNVT-FYRTEDNSETKITDNQLIIGADGAYSGVR  160 (379)
Q Consensus        87 ~~~g~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~-~~~~v~-v~~~~~G~~~~~i~adlVV~AdG~~S~vr  160 (379)
                                       ..+ +..|++++.+++|++++. .++++. +.+. +|+..+ +.+|.||.|.|+...+.
T Consensus       229 -----------------~~l-~~~gI~i~~~~~v~~i~~~~~~~~~~~~~~-~g~~~~-i~~D~vi~a~G~~p~~~  284 (472)
T PRK05976        229 -----------------RLL-KKLGVRVVTGAKVLGLTLKKDGGVLIVAEH-NGEEKT-LEADKVLVSVGRRPNTE  284 (472)
T ss_pred             -----------------HHH-HhcCCEEEeCcEEEEEEEecCCCEEEEEEe-CCceEE-EEeCEEEEeeCCccCCC
Confidence                             112 225899999999999975 233443 4455 775445 99999999999987654

>PRK07846 mycothione reductase; Reviewed

Probab=98.05  E-value=4e-05  Score=76.78  Aligned_cols=99  Identities=20%  Similarity=0.305  Sum_probs=73.5

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeEEE
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARMIH   86 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~   86 (379)
                      .+|+|||||+.|+-+|..|++.|.+|+++|+.+....           .+.+...+.+                      
T Consensus       167 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~ll~-----------~~d~~~~~~l----------------------  213 (451)
T PRK07846        167 ESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGRLLR-----------HLDDDISERF----------------------  213 (451)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcccc-----------ccCHHHHHHH----------------------
Confidence            5899999999999999999999999999998753310           0111110000                      


Q ss_pred             ecCCcEEEeeCCCCCcHHHHhcCCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEEEecCCCChHHH
Q psy9141          87 GQNGKLREIPYDPVHNQVELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAYSGVR  160 (379)
Q Consensus        87 ~~~g~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlVV~AdG~~S~vr  160 (379)
                                       .... ..++++++++++++++.+++++.+.+. +|++   +++|.||.|.|+.+.+.
T Consensus       214 -----------------~~l~-~~~v~i~~~~~v~~i~~~~~~v~v~~~-~g~~---i~~D~vl~a~G~~pn~~  265 (451)
T PRK07846        214 -----------------TELA-SKRWDVRLGRNVVGVSQDGSGVTLRLD-DGST---VEADVLLVATGRVPNGD  265 (451)
T ss_pred             -----------------HHHH-hcCeEEEeCCEEEEEEEcCCEEEEEEC-CCcE---eecCEEEEEECCccCcc
Confidence                             0111 136888999999999877777778877 8876   99999999999988654

>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional

Probab=98.05  E-value=3.4e-05  Score=75.37  Aligned_cols=108  Identities=16%  Similarity=0.193  Sum_probs=67.8

Q ss_pred             CcEEEECCChHHHHHHHHHHhC--CCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeE
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKN--QYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARM   84 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~--G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~   84 (379)
                      .+|+|||||+||+.+|..|.+.  ..+|+||++.+.....     +.   .++.    .         + ......... 
T Consensus         3 ~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~~~~y~-----~~---~l~~----~---------~-~~~~~~~~~-   59 (377)
T PRK04965          3 NGIVIIGSGFAARQLVKNIRKQDAHIPITLITADSGDEYN-----KP---DLSH----V---------F-SQGQRADDL-   59 (377)
T ss_pred             CCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCCCCCcC-----cC---cCcH----H---------H-hCCCCHHHh-
Confidence            4899999999999999999886  4589999988743211     10   0110    0         0 000000000 


Q ss_pred             EEecCCcEEEeeCCCCCcHHHHhcCCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEEEecCCCChH
Q psy9141          85 IHGQNGKLREIPYDPVHNQVELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAYSG  158 (379)
Q Consensus        85 ~~~~~g~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlVV~AdG~~S~  158 (379)
                                   ... ......+..+++++.+++|++++.+...++  +  +|.+   +.+|.||.|+|....
T Consensus        60 -------------~~~-~~~~~~~~~gv~~~~~~~V~~id~~~~~v~--~--~~~~---~~yd~LVlATG~~~~  112 (377)
T PRK04965         60 -------------TRQ-SAGEFAEQFNLRLFPHTWVTDIDAEAQVVK--S--QGNQ---WQYDKLVLATGASAF  112 (377)
T ss_pred             -------------hcC-CHHHHHHhCCCEEECCCEEEEEECCCCEEE--E--CCeE---EeCCEEEECCCCCCC
Confidence                         000 002233345899999999999987665433  3  5655   999999999998763

>PTZ00318 NADH dehydrogenase-like protein; Provisional

Probab=98.05  E-value=1.7e-05  Score=78.76  Aligned_cols=110  Identities=15%  Similarity=0.147  Sum_probs=68.5

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceee
Q psy9141           4 NSKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRAR   83 (379)
Q Consensus         4 m~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~   83 (379)
                      +++.+|||||||.+|+.+|..|.+.+.+|+|||+++....             .+.    +      .............
T Consensus         8 ~~~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~~~~~~~-------------~~~----l------~~~~~g~~~~~~~   64 (424)
T PTZ00318          8 LKKPNVVVLGTGWAGAYFVRNLDPKKYNITVISPRNHMLF-------------TPL----L------PQTTTGTLEFRSI   64 (424)
T ss_pred             CCCCeEEEECCCHHHHHHHHHhCcCCCeEEEEcCCCCcch-------------hhh----H------HHhcccCCChHHh
Confidence            5567999999999999999999877899999998763321             110    0      0100000000000


Q ss_pred             EEEecCCcEEEeeCCCCCcHHHHhcCCCCeEEeCceEEEEEecCCeEEEEE--------ccCCceeEEEeecEEEecCCC
Q psy9141          84 MIHGQNGKLREIPYDPVHNQVELEQYPDCNIYFQHKLINLDVNSGNVTFYR--------TEDNSETKITDNQLIIGADGA  155 (379)
Q Consensus        84 ~~~~~~g~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~--------~~~G~~~~~i~adlVV~AdG~  155 (379)
                                ..++      .......++++.. .+|++|+.++..+++..        . +|.+   +.+|+||.|+|.
T Consensus        65 ----------~~~~------~~~~~~~~~~~i~-~~V~~Id~~~~~v~~~~~~~~~~~~~-~g~~---i~yD~LViAtGs  123 (424)
T PTZ00318         65 ----------CEPV------RPALAKLPNRYLR-AVVYDVDFEEKRVKCGVVSKSNNANV-NTFS---VPYDKLVVAHGA  123 (424)
T ss_pred             ----------HHHH------HHHhccCCeEEEE-EEEEEEEcCCCEEEEecccccccccC-CceE---ecCCEEEECCCc
Confidence                      0000      1112224566654 58999988888877732        2 4555   999999999999


Q ss_pred             Ch
Q psy9141         156 YS  157 (379)
Q Consensus       156 ~S  157 (379)
                      ..
T Consensus       124 ~~  125 (424)
T PTZ00318        124 RP  125 (424)
T ss_pred             cc
Confidence            75

>KOG2404|consensus

Probab=98.02  E-value=5.1e-05  Score=70.35  Aligned_cols=37  Identities=30%  Similarity=0.383  Sum_probs=32.7

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCC
Q psy9141           8 SVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNS   44 (379)
Q Consensus         8 dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~   44 (379)
                      .|+|||+|.|||+++..+...|-.|+++|+.......
T Consensus        11 pvvVIGgGLAGLsasn~iin~gg~V~llek~~s~GGN   47 (477)
T KOG2404|consen   11 PVVVIGGGLAGLSASNDIINKGGIVILLEKAGSIGGN   47 (477)
T ss_pred             cEEEECCchhhhhhHHHHHhcCCeEEEEeccCCcCCc
Confidence            6999999999999999999887779999999866543

>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B

Probab=98.02  E-value=2.2e-06  Score=82.51  Aligned_cols=148  Identities=11%  Similarity=0.110  Sum_probs=69.1

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCC-CcEEEEccCCCCCCCCCC--CCcccccccCHHHHHHHHHCCChHHHHhCCCCcee
Q psy9141           6 KKSVVIVGGGLVGSLSACMFAKNQ-YEVNLYEAREDIRNSGLS--EGKSINLALSVRGREALRRIGLEDKLLAHGIPMRA   82 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La~~G-~~V~viE~~~~~~~~~~~--~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~   82 (379)
                      .+|+++||.||++|++|+.|...+ .+++.+|+++...-.+..  .|..++       ...|+.|--   +..-..+..-
T Consensus         2 ~~D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~f~Wh~gmll~~~~~q-------~~fl~Dlvt---~~~P~s~~sf   71 (341)
T PF13434_consen    2 IYDLIGIGFGPFNLSLAALLEEHGDLKALFLERRPSFSWHPGMLLPGARMQ-------VSFLKDLVT---LRDPTSPFSF   71 (341)
T ss_dssp             EESEEEE--SHHHHHHHHHHHHHH---EEEEES-SS--TTGGG--SS-B-S-------S-TTSSSST---TT-TTSTTSH
T ss_pred             ceeEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCCCCcCCccCCCCCccc-------cccccccCc---CcCCCCcccH
Confidence            479999999999999999999886 899999998865322100  011000       011111100   0000011111


Q ss_pred             eEEEecCCcEEEe---eCCCCCcH------HHHhcCCCCeEEeCceEEEEEecCC----eEEEEEc-cCCceeEEEeecE
Q psy9141          83 RMIHGQNGKLREI---PYDPVHNQ------VELEQYPDCNIYFQHKLINLDVNSG----NVTFYRT-EDNSETKITDNQL  148 (379)
Q Consensus        83 ~~~~~~~g~~~~~---~~~~~~~~------~~~~~~~gv~i~~~~~v~~i~~~~~----~v~v~~~-~~G~~~~~i~adl  148 (379)
                      ..+....++...+   .+..+...      ..+++.-+-.++++++|++|+.+++    .++|++. .+|+..+ +.|+.
T Consensus        72 lnYL~~~~rl~~f~~~~~~~p~R~ef~dYl~Wva~~~~~~v~~~~~V~~I~~~~~~~~~~~~V~~~~~~g~~~~-~~ar~  150 (341)
T PF13434_consen   72 LNYLHEHGRLYEFYNRGYFFPSRREFNDYLRWVAEQLDNQVRYGSEVTSIEPDDDGDEDLFRVTTRDSDGDGET-YRARN  150 (341)
T ss_dssp             HHHHHHTT-HHHHHHH--SS-BHHHHHHHHHHHHCCGTTTEEESEEEEEEEEEEETTEEEEEEEEEETTS-EEE-EEESE
T ss_pred             HHHHHHcCChhhhhhcCCCCCCHHHHHHHHHHHHHhCCCceEECCEEEEEEEecCCCccEEEEEEeecCCCeeE-EEeCe
Confidence            1111111211100   00111000      3444444555899999999987664    3677662 1565555 99999


Q ss_pred             EEecCCCChHHHHHhh
Q psy9141         149 IIGADGAYSGVRKCLM  164 (379)
Q Consensus       149 VV~AdG~~S~vr~~l~  164 (379)
                      ||.|.|....+.+++.
T Consensus       151 vVla~G~~P~iP~~~~  166 (341)
T PF13434_consen  151 VVLATGGQPRIPEWFQ  166 (341)
T ss_dssp             EEE----EE---GGGG
T ss_pred             EEECcCCCCCCCcchh
Confidence            9999997766776663

>KOG2852|consensus

Probab=98.01  E-value=1.7e-05  Score=72.42  Aligned_cols=39  Identities=28%  Similarity=0.652  Sum_probs=34.5

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCC------CcEEEEccCCCCCCC
Q psy9141           6 KKSVVIVGGGLVGSLSACMFAKNQ------YEVNLYEAREDIRNS   44 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La~~G------~~V~viE~~~~~~~~   44 (379)
                      ..+|+|||||+.|.++|+.|++++      +.|+|+|+..-....
T Consensus        10 sk~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~~IA~ga   54 (380)
T KOG2852|consen   10 SKKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESKEIAGGA   54 (380)
T ss_pred             ceEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeeccccccc
Confidence            468999999999999999999998      799999998766543

>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein

Probab=98.01  E-value=2.5e-05  Score=75.82  Aligned_cols=104  Identities=13%  Similarity=0.153  Sum_probs=65.5

Q ss_pred             cEEEECCChHHHHHHHHHHhC---CCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeE
Q psy9141           8 SVVIVGGGLVGSLSACMFAKN---QYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARM   84 (379)
Q Consensus         8 dVvIVGaGpaGl~~A~~La~~---G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~   84 (379)
                      +|||||||++|+.+|..|.++   +.+|+|||+.+.....             +..          ..+.......... 
T Consensus         1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~~~~-------------~~~----------~~~~~g~~~~~~~-   56 (364)
T TIGR03169         1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTTPYS-------------GML----------PGMIAGHYSLDEI-   56 (364)
T ss_pred             CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCCccc-------------chh----------hHHHheeCCHHHh-
Confidence            489999999999999999643   6899999987643211             100          0000000000000 


Q ss_pred             EEecCCcEEEeeCCCCCcHHHHhcCCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEEEecCCCCh
Q psy9141          85 IHGQNGKLREIPYDPVHNQVELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAYS  157 (379)
Q Consensus        85 ~~~~~g~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlVV~AdG~~S  157 (379)
                               ..+      .....+..+++++.+ +|++++.++..  +.+. +|++   +++|+||.|+|...
T Consensus        57 ---------~~~------~~~~~~~~gv~~~~~-~v~~id~~~~~--V~~~-~g~~---~~yD~LviAtG~~~  107 (364)
T TIGR03169        57 ---------RID------LRRLARQAGARFVIA-EATGIDPDRRK--VLLA-NRPP---LSYDVLSLDVGSTT  107 (364)
T ss_pred             ---------ccc------HHHHHHhcCCEEEEE-EEEEEecccCE--EEEC-CCCc---ccccEEEEccCCCC
Confidence                     000      012223358888875 79999877664  4455 8877   99999999999765

Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.

>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]

Probab=97.98  E-value=5.1e-05  Score=73.58  Aligned_cols=47  Identities=15%  Similarity=0.235  Sum_probs=39.8

Q ss_pred             hcCCCCeEEeCceEEEEEecCCeEE-EEEccCCceeEEEeecEEEecCCCCh
Q psy9141         107 EQYPDCNIYFQHKLINLDVNSGNVT-FYRTEDNSETKITDNQLIIGADGAYS  157 (379)
Q Consensus       107 ~~~~gv~i~~~~~v~~i~~~~~~v~-v~~~~~G~~~~~i~adlVV~AdG~~S  157 (379)
                      .+..|++++++++|.+++..++.+. +.++ +|.+   +.+|.||.|-|+.+
T Consensus       183 l~~~G~ei~f~t~VeDi~~~~~~~~~v~~~-~g~~---i~~~~vvlA~Grsg  230 (486)
T COG2509         183 LESLGGEIRFNTEVEDIEIEDNEVLGVKLT-KGEE---IEADYVVLAPGRSG  230 (486)
T ss_pred             HHhcCcEEEeeeEEEEEEecCCceEEEEcc-CCcE---EecCEEEEccCcch
Confidence            3446899999999999999887544 6666 8887   99999999999987

>TIGR02733 desat_CrtD C-3',4' desaturase CrtD

Probab=97.98  E-value=7.9e-06  Score=82.77  Aligned_cols=36  Identities=36%  Similarity=0.613  Sum_probs=33.7

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCC
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIR   42 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~   42 (379)
                      .||+|||||++||++|..|+++|++|+|+|+++.+.
T Consensus         2 ~dvvIIGaG~~GL~aa~~La~~G~~v~vlE~~~~~G   37 (492)
T TIGR02733         2 TSVVVIGAGIAGLTAAALLAKRGYRVTLLEQHAQPG   37 (492)
T ss_pred             CeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCC
Confidence            489999999999999999999999999999998664

Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.

>PRK06115 dihydrolipoamide dehydrogenase; Reviewed

Probab=97.97  E-value=0.00011  Score=74.04  Aligned_cols=104  Identities=13%  Similarity=0.198  Sum_probs=72.4

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeEE
Q psy9141           6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARMI   85 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~~   85 (379)
                      ..+|+|||||+.|+-+|..|++.|.+|+++|+.+.....           +.+...+.+.                    
T Consensus       174 ~~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~il~~-----------~d~~~~~~l~--------------------  222 (466)
T PRK06115        174 PKHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDRICPG-----------TDTETAKTLQ--------------------  222 (466)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCCCCCC-----------CCHHHHHHHH--------------------
Confidence            358999999999999999999999999999987533210           1111111110                    


Q ss_pred             EecCCcEEEeeCCCCCcHHHHhcCCCCeEEeCceEEEEEecCCeEEEEEc--cCCceeEEEeecEEEecCCCChHHH
Q psy9141          86 HGQNGKLREIPYDPVHNQVELEQYPDCNIYFQHKLINLDVNSGNVTFYRT--EDNSETKITDNQLIIGADGAYSGVR  160 (379)
Q Consensus        86 ~~~~g~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~--~~G~~~~~i~adlVV~AdG~~S~vr  160 (379)
                                        ..+. ..+++++++++|++++.+++++.+.+.  .+|+..+ +++|.||.|.|+.+.+.
T Consensus       223 ------------------~~l~-~~gV~i~~~~~V~~i~~~~~~v~v~~~~~~~g~~~~-i~~D~vi~a~G~~pn~~  279 (466)
T PRK06115        223 ------------------KALT-KQGMKFKLGSKVTGATAGADGVSLTLEPAAGGAAET-LQADYVLVAIGRRPYTQ  279 (466)
T ss_pred             ------------------HHHH-hcCCEEEECcEEEEEEEcCCeEEEEEEEcCCCceeE-EEeCEEEEccCCccccc
Confidence                              1122 248999999999999876666665432  1343334 99999999999987654

>PRK07846 mycothione reductase; Reviewed

Probab=97.97  E-value=2.2e-05  Score=78.70  Aligned_cols=32  Identities=16%  Similarity=0.192  Sum_probs=27.9

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCcEEEEccCC
Q psy9141           6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEARE   39 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~   39 (379)
                      +||++||||||+|..+|..  +.|.+|+|+|+..
T Consensus         1 ~yD~vVIG~G~~g~~aa~~--~~G~~V~lie~~~   32 (451)
T PRK07846          1 HYDLIIIGTGSGNSILDER--FADKRIAIVEKGT   32 (451)
T ss_pred             CCCEEEECCCHHHHHHHHH--HCCCeEEEEeCCC
Confidence            4899999999999988865  4699999999864

>PLN02576 protoporphyrinogen oxidase

Probab=97.96  E-value=8.8e-06  Score=82.46  Aligned_cols=38  Identities=34%  Similarity=0.490  Sum_probs=34.8

Q ss_pred             CCCcEEEECCChHHHHHHHHHHhC-CCcEEEEccCCCCC
Q psy9141           5 SKKSVVIVGGGLVGSLSACMFAKN-QYEVNLYEAREDIR   42 (379)
Q Consensus         5 ~~~dVvIVGaGpaGl~~A~~La~~-G~~V~viE~~~~~~   42 (379)
                      .++||+|||||++||++|+.|++. |++|+|+|+++...
T Consensus        11 ~~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~rvG   49 (496)
T PLN02576         11 SSKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRVG   49 (496)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCCCC
Confidence            357999999999999999999999 99999999998654

>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated

Probab=97.96  E-value=0.00012  Score=73.64  Aligned_cols=101  Identities=21%  Similarity=0.303  Sum_probs=71.4

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeEEE
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARMIH   86 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~   86 (379)
                      .+++|||||++|+-+|..|++.|.+|+++|+.+.....           ..+...+.+.                     
T Consensus       171 ~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ll~~-----------~d~e~~~~l~---------------------  218 (458)
T PRK06912        171 SSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQLLPG-----------EDEDIAHILR---------------------  218 (458)
T ss_pred             CcEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCcc-----------ccHHHHHHHH---------------------
Confidence            47999999999999999999999999999987533110           0011000000                     


Q ss_pred             ecCCcEEEeeCCCCCcHHHHhcCCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEEEecCCCChHHH
Q psy9141          87 GQNGKLREIPYDPVHNQVELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAYSGVR  160 (379)
Q Consensus        87 ~~~g~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlVV~AdG~~S~vr  160 (379)
                                       ..+. ..|++++++++|++++.++..+.+..  +|+..+ +++|+||.|.|+.+.+.
T Consensus       219 -----------------~~L~-~~GI~i~~~~~V~~i~~~~~~v~~~~--~g~~~~-i~~D~vivA~G~~p~~~  271 (458)
T PRK06912        219 -----------------EKLE-NDGVKIFTGAALKGLNSYKKQALFEY--EGSIQE-VNAEFVLVSVGRKPRVQ  271 (458)
T ss_pred             -----------------HHHH-HCCCEEEECCEEEEEEEcCCEEEEEE--CCceEE-EEeCEEEEecCCccCCC
Confidence                             1122 25899999999999987666665543  454334 89999999999988764

>PRK07845 flavoprotein disulfide reductase; Reviewed

Probab=97.95  E-value=0.00011  Score=74.03  Aligned_cols=100  Identities=15%  Similarity=0.230  Sum_probs=75.0

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeEEE
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARMIH   86 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~   86 (379)
                      .+++|||+|+.|+-+|..|++.|.+|+++|+.+.....           ..+.....++                     
T Consensus       178 ~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~~~l~~-----------~d~~~~~~l~---------------------  225 (466)
T PRK07845        178 EHLIVVGSGVTGAEFASAYTELGVKVTLVSSRDRVLPG-----------EDADAAEVLE---------------------  225 (466)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcCCCC-----------CCHHHHHHHH---------------------
Confidence            47999999999999999999999999999987643211           1111111110                     


Q ss_pred             ecCCcEEEeeCCCCCcHHHHhcCCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEEEecCCCChHHH
Q psy9141          87 GQNGKLREIPYDPVHNQVELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAYSGVR  160 (379)
Q Consensus        87 ~~~g~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlVV~AdG~~S~vr  160 (379)
                                       ..+. ..|++++.++++++++.+++++.+.+. +|++   +++|.||.|.|+...+.
T Consensus       226 -----------------~~L~-~~gV~i~~~~~v~~v~~~~~~~~v~~~-~g~~---l~~D~vl~a~G~~pn~~  277 (466)
T PRK07845        226 -----------------EVFA-RRGMTVLKRSRAESVERTGDGVVVTLT-DGRT---VEGSHALMAVGSVPNTA  277 (466)
T ss_pred             -----------------HHHH-HCCcEEEcCCEEEEEEEeCCEEEEEEC-CCcE---EEecEEEEeecCCcCCC
Confidence                             1122 258999999999999877778888887 8876   99999999999987654

>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]

Probab=97.95  E-value=6.2e-06  Score=81.45  Aligned_cols=145  Identities=21%  Similarity=0.272  Sum_probs=79.8

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCC-ChHHHHhC-CCCce
Q psy9141           4 NSKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIG-LEDKLLAH-GIPMR   81 (379)
Q Consensus         4 m~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lG-l~~~l~~~-~~~~~   81 (379)
                      +..|||+|||||-||+-+|++.||.|.+++++--+..--.. .++.-+|.--=-..-.+.++.|| +....... +..++
T Consensus         2 ~~~~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~~dtig~-msCNPaIGG~~KG~lvrEIDALGG~Mg~~~D~~~IQ~r   80 (621)
T COG0445           2 PKEYDVIVIGGGHAGVEAALAAARMGAKTLLLTLNLDTIGE-MSCNPAIGGPGKGHLVREIDALGGLMGKAADKAGIQFR   80 (621)
T ss_pred             CCCCceEEECCCccchHHHHhhhccCCeEEEEEcCCCceee-cccccccCCcccceeEEeehhccchHHHhhhhcCCchh
Confidence            34699999999999999999999999999998766532111 00010000000001123344443 22222111 22211


Q ss_pred             eeEEEec-CCcEEEee---CCCC-Cc---HHHHhcCCCCeEEeCceEEEEEecCC-eEE-EEEccCCceeEEEeecEEEe
Q psy9141          82 ARMIHGQ-NGKLREIP---YDPV-HN---QVELEQYPDCNIYFQHKLINLDVNSG-NVT-FYRTEDNSETKITDNQLIIG  151 (379)
Q Consensus        82 ~~~~~~~-~g~~~~~~---~~~~-~~---~~~~~~~~gv~i~~~~~v~~i~~~~~-~v~-v~~~~~G~~~~~i~adlVV~  151 (379)
                         +.+. .|.-.+-+   .+.. +.   +..+...+|..++.+ .|+++..+++ .+. |.+. +|..   +.|+.||.
T Consensus        81 ---~LN~sKGPAVra~RaQaDk~~Y~~~mk~~le~~~NL~l~q~-~v~dli~e~~~~v~GV~t~-~G~~---~~a~aVVl  152 (621)
T COG0445          81 ---MLNSSKGPAVRAPRAQADKWLYRRAMKNELENQPNLHLLQG-EVEDLIVEEGQRVVGVVTA-DGPE---FHAKAVVL  152 (621)
T ss_pred             ---hccCCCcchhcchhhhhhHHHHHHHHHHHHhcCCCceehHh-hhHHHhhcCCCeEEEEEeC-CCCe---eecCEEEE
Confidence               1221 11111000   0000 00   145667789988765 5777766444 344 6777 8988   99999999


Q ss_pred             cCCCCh
Q psy9141         152 ADGAYS  157 (379)
Q Consensus       152 AdG~~S  157 (379)
                      ++|-+-
T Consensus       153 TTGTFL  158 (621)
T COG0445         153 TTGTFL  158 (621)
T ss_pred             eecccc
Confidence            999873

>PRK06327 dihydrolipoamide dehydrogenase; Validated

Probab=97.93  E-value=0.00012  Score=73.91  Aligned_cols=103  Identities=15%  Similarity=0.195  Sum_probs=73.6

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeEEE
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARMIH   86 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~   86 (379)
                      .+|+|||+|+.|+-+|..|++.|.+|+|+|+.+.....           ..+.....+.                     
T Consensus       184 ~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~-----------~d~~~~~~~~---------------------  231 (475)
T PRK06327        184 KKLAVIGAGVIGLELGSVWRRLGAEVTILEALPAFLAA-----------ADEQVAKEAA---------------------  231 (475)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCccCCc-----------CCHHHHHHHH---------------------
Confidence            58999999999999999999999999999987633110           0111100000                     


Q ss_pred             ecCCcEEEeeCCCCCcHHHHhcCCCCeEEeCceEEEEEecCCeEEEEEcc-CCceeEEEeecEEEecCCCChHHH
Q psy9141          87 GQNGKLREIPYDPVHNQVELEQYPDCNIYFQHKLINLDVNSGNVTFYRTE-DNSETKITDNQLIIGADGAYSGVR  160 (379)
Q Consensus        87 ~~~g~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~-~G~~~~~i~adlVV~AdG~~S~vr  160 (379)
                                       ..+. ..|++++.+++|++++.+++++.+.+.+ +|++.+ +++|.||.|.|..+.+.
T Consensus       232 -----------------~~l~-~~gi~i~~~~~v~~i~~~~~~v~v~~~~~~g~~~~-i~~D~vl~a~G~~p~~~  287 (475)
T PRK06327        232 -----------------KAFT-KQGLDIHLGVKIGEIKTGGKGVSVAYTDADGEAQT-LEVDKLIVSIGRVPNTD  287 (475)
T ss_pred             -----------------HHHH-HcCcEEEeCcEEEEEEEcCCEEEEEEEeCCCceeE-EEcCEEEEccCCccCCC
Confidence                             1111 2589999999999998877777766541 244345 99999999999988754

>PRK14989 nitrite reductase subunit NirD; Provisional

Probab=97.93  E-value=5.1e-05  Score=81.33  Aligned_cols=107  Identities=12%  Similarity=0.181  Sum_probs=69.4

Q ss_pred             CcEEEECCChHHHHHHHHHHhC----CCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCcee
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKN----QYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRA   82 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~----G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~   82 (379)
                      .+|||||+|++|+.+|..|.+.    +++|+||++.+...-.     +.   .++.    .+.. ..++.          
T Consensus         4 ~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~~Y~-----r~---~L~~----~~~~-~~~~~----------   60 (847)
T PRK14989          4 VRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRIAYD-----RV---HLSS----YFSH-HTAEE----------   60 (847)
T ss_pred             CcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCCccc-----CC---cchH----hHcC-CCHHH----------
Confidence            4899999999999999999764    5799999988765311     10   1110    0000 00000          


Q ss_pred             eEEEecCCcEEEeeCCCCCcHHHHhcCCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEEEecCCCChH
Q psy9141          83 RMIHGQNGKLREIPYDPVHNQVELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAYSG  158 (379)
Q Consensus        83 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlVV~AdG~~S~  158 (379)
                      +.            .. .   ....+..+++++.+++|++++.+..  +|.+. +|++   +.+|.||.|+|....
T Consensus        61 l~------------~~-~---~~~~~~~gI~~~~g~~V~~Id~~~~--~V~~~-~G~~---i~yD~LVIATGs~p~  114 (847)
T PRK14989         61 LS------------LV-R---EGFYEKHGIKVLVGERAITINRQEK--VIHSS-AGRT---VFYDKLIMATGSYPW  114 (847)
T ss_pred             cc------------CC-C---HHHHHhCCCEEEcCCEEEEEeCCCc--EEEEC-CCcE---EECCEEEECCCCCcC
Confidence            00            00 0   1122236899999999999877543  34556 7877   999999999998754

>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase

Probab=97.92  E-value=1.2e-05  Score=78.10  Aligned_cols=36  Identities=33%  Similarity=0.428  Sum_probs=33.1

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCC
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIR   42 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~   42 (379)
                      +||+|||||++|+++|..|++.|.+|+|+|+++...
T Consensus         2 ~DvvIIGaG~aGlsaA~~La~~G~~V~viEk~~~iG   37 (377)
T TIGR00031         2 FDYIIVGAGLSGIVLANILAQLNKRVLVVEKRNHIG   37 (377)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCC
Confidence            599999999999999999999999999999976544

The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.

>TIGR03452 mycothione_red mycothione reductase

Probab=97.92  E-value=9.9e-05  Score=73.99  Aligned_cols=98  Identities=19%  Similarity=0.304  Sum_probs=72.6

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeEEE
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARMIH   86 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~   86 (379)
                      .+++|||||+.|+-+|..|++.|.+|+++|+.+....           .+.+.....+                      
T Consensus       170 k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~ll~-----------~~d~~~~~~l----------------------  216 (452)
T TIGR03452       170 ESLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTKLLR-----------HLDEDISDRF----------------------  216 (452)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCcccc-----------ccCHHHHHHH----------------------
Confidence            4799999999999999999999999999998653310           0111110000                      


Q ss_pred             ecCCcEEEeeCCCCCcHHHHhcCCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEEEecCCCChHH
Q psy9141          87 GQNGKLREIPYDPVHNQVELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAYSGV  159 (379)
Q Consensus        87 ~~~g~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlVV~AdG~~S~v  159 (379)
                                       ....+ .+++++.+++|++++.+++++.+.+. +|++   +++|.||.|.|+...+
T Consensus       217 -----------------~~~~~-~gI~i~~~~~V~~i~~~~~~v~v~~~-~g~~---i~~D~vl~a~G~~pn~  267 (452)
T TIGR03452       217 -----------------TEIAK-KKWDIRLGRNVTAVEQDGDGVTLTLD-DGST---VTADVLLVATGRVPNG  267 (452)
T ss_pred             -----------------HHHHh-cCCEEEeCCEEEEEEEcCCeEEEEEc-CCCE---EEcCEEEEeeccCcCC
Confidence                             11111 36889999999999887777878777 7876   9999999999988754

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.

>PLN02268 probable polyamine oxidase

Probab=97.90  E-value=1.3e-05  Score=79.76  Aligned_cols=41  Identities=15%  Similarity=0.078  Sum_probs=36.1

Q ss_pred             CCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEEEecCCC
Q psy9141         111 DCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGA  155 (379)
Q Consensus       111 gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlVV~AdG~  155 (379)
                      +++|++++.|++|+.++++++|++. +|++   +.||.||.|.-.
T Consensus       210 ~~~i~~~~~V~~i~~~~~~v~v~~~-~g~~---~~ad~VIva~P~  250 (435)
T PLN02268        210 GLDIRLNHRVTKIVRRYNGVKVTVE-DGTT---FVADAAIIAVPL  250 (435)
T ss_pred             cCceeCCCeeEEEEEcCCcEEEEEC-CCcE---EEcCEEEEecCH
Confidence            5679999999999999999999888 8877   899999999743

>COG3349 Uncharacterized conserved protein [Function unknown]

Probab=97.89  E-value=1.3e-05  Score=79.08  Aligned_cols=63  Identities=30%  Similarity=0.482  Sum_probs=46.4

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCC----CCCCCccc----cc--ccCHHHHHHHHHCCCh
Q psy9141           8 SVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNS----GLSEGKSI----NL--ALSVRGREALRRIGLE   70 (379)
Q Consensus         8 dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~----~~~~g~~i----~~--al~~~~~~~l~~lGl~   70 (379)
                      +|+|+|||+|||++|+.|+.+|++|+|+|+++.....    ...||+.+    |+  .-..+..++|.+++..
T Consensus         2 rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~~~GGk~~s~~~~dg~~~E~glh~f~~~Y~n~~~ll~~~~~~   74 (485)
T COG3349           2 RVAIAGAGLAGLAAAYELADAGYDVTLYEARDRLGGKVASWRDSDGNHVEHGLHVFFGCYYNLLTLLKELPIE   74 (485)
T ss_pred             eEEEEcccHHHHHHHHHHHhCCCceEEEeccCccCceeeeeecCCCCeeeeeeEEechhHHHHHHHhhhCCch
Confidence            6999999999999999999999999999999976522    12344332    21  1234667777777654

>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit

Probab=97.87  E-value=1.5e-05  Score=85.94  Aligned_cols=36  Identities=22%  Similarity=0.445  Sum_probs=33.5

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCC
Q psy9141           6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDI   41 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~   41 (379)
                      .++|+||||||||+++|+.|++.|++|+|+|+.+.+
T Consensus       537 ~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~l  572 (1012)
T TIGR03315       537 AHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKP  572 (1012)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCeEEEEeccccc
Confidence            479999999999999999999999999999998754

Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.

>PRK06292 dihydrolipoamide dehydrogenase; Validated

Probab=97.87  E-value=0.00022  Score=71.62  Aligned_cols=101  Identities=15%  Similarity=0.225  Sum_probs=70.6

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeEEE
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARMIH   86 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~   86 (379)
                      .+|+|||+|+.|+-+|..|++.|.+|+++|+.+.....           +.+.....++                     
T Consensus       170 k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~-----------~d~~~~~~~~---------------------  217 (460)
T PRK06292        170 KSLAVIGGGVIGLELGQALSRLGVKVTVFERGDRILPL-----------EDPEVSKQAQ---------------------  217 (460)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCcc-----------hhHHHHHHHH---------------------
Confidence            58999999999999999999999999999987533110           0111100000                     


Q ss_pred             ecCCcEEEeeCCCCCcHHHHhcCCCCeEEeCceEEEEEecCC-eEEEEEccCCceeEEEeecEEEecCCCChHHH
Q psy9141          87 GQNGKLREIPYDPVHNQVELEQYPDCNIYFQHKLINLDVNSG-NVTFYRTEDNSETKITDNQLIIGADGAYSGVR  160 (379)
Q Consensus        87 ~~~g~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~-~v~v~~~~~G~~~~~i~adlVV~AdG~~S~vr  160 (379)
                                       ..+. .. +++++++++++++.+++ .++++.. +|+..+ +++|.||.|.|....+.
T Consensus       218 -----------------~~l~-~~-I~i~~~~~v~~i~~~~~~~v~~~~~-~~~~~~-i~~D~vi~a~G~~p~~~  271 (460)
T PRK06292        218 -----------------KILS-KE-FKIKLGAKVTSVEKSGDEKVEELEK-GGKTET-IEADYVLVATGRRPNTD  271 (460)
T ss_pred             -----------------HHHh-hc-cEEEcCCEEEEEEEcCCceEEEEEc-CCceEE-EEeCEEEEccCCccCCC
Confidence                             1122 24 88999999999987654 5665544 554444 99999999999987655

>PRK06467 dihydrolipoamide dehydrogenase; Reviewed

Probab=97.86  E-value=0.00017  Score=72.63  Aligned_cols=101  Identities=13%  Similarity=0.248  Sum_probs=71.2

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeEEE
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARMIH   86 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~   86 (379)
                      -+|+|||||+.|+-+|..|++.|.+|+|+|+.+..-..           +.+...+.+.                     
T Consensus       175 ~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~il~~-----------~d~~~~~~~~---------------------  222 (471)
T PRK06467        175 KRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQVIPA-----------ADKDIVKVFT---------------------  222 (471)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCCc-----------CCHHHHHHHH---------------------
Confidence            48999999999999999999999999999987643210           1111111110                     


Q ss_pred             ecCCcEEEeeCCCCCcHHHHhcCCCCeEEeCceEEEEEecCCeEEEEEccC--CceeEEEeecEEEecCCCChHHH
Q psy9141          87 GQNGKLREIPYDPVHNQVELEQYPDCNIYFQHKLINLDVNSGNVTFYRTED--NSETKITDNQLIIGADGAYSGVR  160 (379)
Q Consensus        87 ~~~g~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~--G~~~~~i~adlVV~AdG~~S~vr  160 (379)
                                       ..+.+ . ++++.+++|++++.+++++.+.+. +  |+..+ +++|.||.|.|+.+.+.
T Consensus       223 -----------------~~l~~-~-v~i~~~~~v~~i~~~~~~~~v~~~-~~~~~~~~-i~~D~vi~a~G~~pn~~  277 (471)
T PRK06467        223 -----------------KRIKK-Q-FNIMLETKVTAVEAKEDGIYVTME-GKKAPAEP-QRYDAVLVAVGRVPNGK  277 (471)
T ss_pred             -----------------HHHhh-c-eEEEcCCEEEEEEEcCCEEEEEEE-eCCCcceE-EEeCEEEEeecccccCC
Confidence                             11111 2 677888889998877777777654 3  32334 99999999999998765

>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit

Probab=97.85  E-value=0.00013  Score=78.05  Aligned_cols=100  Identities=17%  Similarity=0.209  Sum_probs=71.7

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeEEE
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARMIH   86 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~   86 (379)
                      .+|+|||||++|+-+|..|++.|.+|+|+|+.+..-.      +    .+.+.....+                      
T Consensus       141 k~vvVVGgG~~GlE~A~~L~~~G~~Vtvv~~~~~ll~------~----~ld~~~~~~l----------------------  188 (785)
T TIGR02374       141 KKAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAPGLMA------K----QLDQTAGRLL----------------------  188 (785)
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCeEEEEccCCchhh------h----hcCHHHHHHH----------------------
Confidence            4799999999999999999999999999997653211      0    0111111111                      


Q ss_pred             ecCCcEEEeeCCCCCcHHHHhcCCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEEEecCCCChHH
Q psy9141          87 GQNGKLREIPYDPVHNQVELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAYSGV  159 (379)
Q Consensus        87 ~~~g~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlVV~AdG~~S~v  159 (379)
                                       ....+..|+++++++.++++..++....+.+. ||++   +.+|+||.|.|.....
T Consensus       189 -----------------~~~l~~~GV~v~~~~~v~~i~~~~~~~~v~~~-dG~~---i~~D~Vi~a~G~~Pn~  240 (785)
T TIGR02374       189 -----------------QRELEQKGLTFLLEKDTVEIVGATKADRIRFK-DGSS---LEADLIVMAAGIRPND  240 (785)
T ss_pred             -----------------HHHHHHcCCEEEeCCceEEEEcCCceEEEEEC-CCCE---EEcCEEEECCCCCcCc
Confidence                             11112258889999999888765555567778 8887   9999999999987543

>KOG0685|consensus

Probab=97.83  E-value=6e-05  Score=73.44  Aligned_cols=37  Identities=30%  Similarity=0.562  Sum_probs=32.2

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCC-cEEEEccCCCCC
Q psy9141           6 KKSVVIVGGGLVGSLSACMFAKNQY-EVNLYEAREDIR   42 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La~~G~-~V~viE~~~~~~   42 (379)
                      ...|+|||||+|||++|..|-+.|+ +|+|+|..+...
T Consensus        21 ~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dRIG   58 (498)
T KOG0685|consen   21 NAKIVIIGAGIAGLAAATRLLENGFIDVLILEASDRIG   58 (498)
T ss_pred             CceEEEECCchHHHHHHHHHHHhCCceEEEEEeccccC
Confidence            4589999999999999999997765 899999987654

>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit

Probab=97.83  E-value=8.1e-05  Score=79.57  Aligned_cols=106  Identities=17%  Similarity=0.272  Sum_probs=67.7

Q ss_pred             EEEECCChHHHHHHHHHHhC---CCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeEE
Q psy9141           9 VVIVGGGLVGSLSACMFAKN---QYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARMI   85 (379)
Q Consensus         9 VvIVGaGpaGl~~A~~La~~---G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~~   85 (379)
                      |||||||+||+.+|..|.+.   +++|+|||+.+....     .+.   .++.    ++.  |-        .....+. 
T Consensus         1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~~~y-----~r~---~L~~----~l~--g~--------~~~~~l~-   57 (785)
T TIGR02374         1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHPNY-----NRI---LLSS----VLQ--GE--------ADLDDIT-   57 (785)
T ss_pred             CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCCCCc-----ccc---cccH----HHC--CC--------CCHHHcc-
Confidence            69999999999999988775   579999998875521     110   0100    110  00        0000000 


Q ss_pred             EecCCcEEEeeCCCCCcHHHHhcCCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEEEecCCCChH
Q psy9141          86 HGQNGKLREIPYDPVHNQVELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAYSG  158 (379)
Q Consensus        86 ~~~~g~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlVV~AdG~~S~  158 (379)
                                 ...    ....+..+++++.+++|++++.+...  +.+. +|++   +.+|.||.|+|....
T Consensus        58 -----------~~~----~~~~~~~gv~~~~g~~V~~Id~~~k~--V~~~-~g~~---~~yD~LVlATGs~p~  109 (785)
T TIGR02374        58 -----------LNS----KDWYEKHGITLYTGETVIQIDTDQKQ--VITD-AGRT---LSYDKLILATGSYPF  109 (785)
T ss_pred             -----------CCC----HHHHHHCCCEEEcCCeEEEEECCCCE--EEEC-CCcE---eeCCEEEECCCCCcC
Confidence                       000    11122358999999999999876543  4556 7877   999999999998753

>KOG2665|consensus

Probab=97.83  E-value=2.5e-05  Score=72.12  Aligned_cols=38  Identities=29%  Similarity=0.508  Sum_probs=34.4

Q ss_pred             CCCcEEEECCChHHHHHHHHHHhC--CCcEEEEccCCCCC
Q psy9141           5 SKKSVVIVGGGLVGSLSACMFAKN--QYEVNLYEAREDIR   42 (379)
Q Consensus         5 ~~~dVvIVGaGpaGl~~A~~La~~--G~~V~viE~~~~~~   42 (379)
                      .+||+||||||++||+.|++|.-+  +.+|.|+|+.....
T Consensus        47 ~~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke~~la   86 (453)
T KOG2665|consen   47 ERYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKEKSLA   86 (453)
T ss_pred             ccccEEEECCceeehhhhHHHhhcCCCceEEeeehhhhhc
Confidence            479999999999999999998866  99999999998665

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=97.82  E-value=2e-05  Score=85.25  Aligned_cols=37  Identities=30%  Similarity=0.574  Sum_probs=34.1

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCC
Q psy9141           6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIR   42 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~   42 (379)
                      ..+|+|||||||||++|..|++.|++|+|+|+.+.+.
T Consensus       306 gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~G  342 (944)
T PRK12779        306 KPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLG  342 (944)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCC
Confidence            4789999999999999999999999999999987553

>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]

Probab=97.81  E-value=1.8e-05  Score=74.50  Aligned_cols=35  Identities=29%  Similarity=0.336  Sum_probs=30.5

Q ss_pred             CcEEEECCChHHHHHHHHHHhCC-CcEEEEccCCCC
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKNQ-YEVNLYEAREDI   41 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~G-~~V~viE~~~~~   41 (379)
                      ||+||||+|++|+.+|..|++.| .+|+|+|+.+..
T Consensus         1 yD~iIVGsG~~G~v~A~rLs~~~~~~VlvlEaG~~~   36 (296)
T PF00732_consen    1 YDYIIVGSGAGGSVVASRLSEAGNKKVLVLEAGPRY   36 (296)
T ss_dssp             EEEEEES-SHHHHHHHHHHTTSTTS-EEEEESSBSC
T ss_pred             CCEEEECcCHHHHHHHHHHhhCCCCcEEEEEccccC
Confidence            79999999999999999999997 699999999753

These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....

>PRK12831 putative oxidoreductase; Provisional

Probab=97.80  E-value=2.5e-05  Score=78.49  Aligned_cols=36  Identities=33%  Similarity=0.510  Sum_probs=33.3

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCC
Q psy9141           6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDI   41 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~   41 (379)
                      ..||+||||||+|+++|..|++.|++|+|+|+.+.+
T Consensus       140 ~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~~~  175 (464)
T PRK12831        140 GKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHEP  175 (464)
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCC
Confidence            579999999999999999999999999999987654

>PTZ00052 thioredoxin reductase; Provisional

Probab=97.80  E-value=2e-05  Score=79.96  Aligned_cols=33  Identities=27%  Similarity=0.357  Sum_probs=31.4

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCcEEEEccC
Q psy9141           6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAR   38 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~   38 (379)
                      .|||+||||||+|+.+|..|++.|.+|+|||+.
T Consensus         5 ~yDviVIG~GpaG~~AA~~aa~~G~~V~lie~~   37 (499)
T PTZ00052          5 MYDLVVIGGGSGGMAAAKEAAAHGKKVALFDYV   37 (499)
T ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCeEEEEecc
Confidence            589999999999999999999999999999973

>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.78  E-value=6.6e-05  Score=73.57  Aligned_cols=36  Identities=28%  Similarity=0.494  Sum_probs=30.7

Q ss_pred             CcEEEECCChHHHHHHHHHHhCC---CcEEEEccCCCCC
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKNQ---YEVNLYEAREDIR   42 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~G---~~V~viE~~~~~~   42 (379)
                      ++|+|||+|++|+++|.+|.++-   .+|.|+|+.+...
T Consensus         2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G   40 (474)
T COG4529           2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFG   40 (474)
T ss_pred             ceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccccC
Confidence            48999999999999999998861   2399999998664

>PLN02852 ferredoxin-NADP+ reductase

Probab=97.77  E-value=3.1e-05  Score=77.78  Aligned_cols=37  Identities=24%  Similarity=0.246  Sum_probs=33.8

Q ss_pred             CCcEEEECCChHHHHHHHHHHh--CCCcEEEEccCCCCC
Q psy9141           6 KKSVVIVGGGLVGSLSACMFAK--NQYEVNLYEAREDIR   42 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La~--~G~~V~viE~~~~~~   42 (379)
                      ..+|+||||||||+.+|..|++  .|++|+|+|+.+.+.
T Consensus        26 ~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pg   64 (491)
T PLN02852         26 PLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPF   64 (491)
T ss_pred             CCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCc
Confidence            4689999999999999999987  799999999998764

>PRK14989 nitrite reductase subunit NirD; Provisional

Probab=97.76  E-value=0.00023  Score=76.37  Aligned_cols=100  Identities=21%  Similarity=0.245  Sum_probs=71.8

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeEEE
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARMIH   86 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~   86 (379)
                      ..++|||||+.|+-+|..|++.|.+|+|+|+.+..-.      +    .+.+...+.++                     
T Consensus       146 k~vvVIGgG~iGlE~A~~L~~~G~~VtvVe~~~~ll~------~----~ld~~~~~~l~---------------------  194 (847)
T PRK14989        146 KRGAVVGGGLLGLEAAGALKNLGVETHVIEFAPMLMA------E----QLDQMGGEQLR---------------------  194 (847)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEeccccchh------h----hcCHHHHHHHH---------------------
Confidence            4799999999999999999999999999998753211      0    11222211111                     


Q ss_pred             ecCCcEEEeeCCCCCcHHHHhcCCCCeEEeCceEEEEEecC--CeEEEEEccCCceeEEEeecEEEecCCCChHH
Q psy9141          87 GQNGKLREIPYDPVHNQVELEQYPDCNIYFQHKLINLDVNS--GNVTFYRTEDNSETKITDNQLIIGADGAYSGV  159 (379)
Q Consensus        87 ~~~g~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~--~~v~v~~~~~G~~~~~i~adlVV~AdG~~S~v  159 (379)
                                       ..+ +..|+++++++.++++..++  ....+.+. +|++   +.+|+||.|.|.....
T Consensus       195 -----------------~~L-~~~GV~v~~~~~v~~I~~~~~~~~~~v~~~-dG~~---i~~D~Vv~A~G~rPn~  247 (847)
T PRK14989        195 -----------------RKI-ESMGVRVHTSKNTLEIVQEGVEARKTMRFA-DGSE---LEVDFIVFSTGIRPQD  247 (847)
T ss_pred             -----------------HHH-HHCCCEEEcCCeEEEEEecCCCceEEEEEC-CCCE---EEcCEEEECCCcccCc
Confidence                             112 22588999999999997643  23456777 8987   9999999999988754

>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase

Probab=97.75  E-value=0.00034  Score=69.54  Aligned_cols=98  Identities=20%  Similarity=0.236  Sum_probs=68.8

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeEEE
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARMIH   86 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~   86 (379)
                      .+|+|||||++|+-+|..|++.|.+|+++++.+.....          .+.+.....+                      
T Consensus       138 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~~~~----------~~~~~~~~~~----------------------  185 (427)
T TIGR03385       138 ENVVIIGGGYIGIEMAEALRERGKNVTLIHRSERILNK----------LFDEEMNQIV----------------------  185 (427)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCcEEEEECCcccCcc----------ccCHHHHHHH----------------------
Confidence            57999999999999999999999999999987533100          0111110000                      


Q ss_pred             ecCCcEEEeeCCCCCcHHHHhcCCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEEEecCCCChHH
Q psy9141          87 GQNGKLREIPYDPVHNQVELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAYSGV  159 (379)
Q Consensus        87 ~~~g~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlVV~AdG~~S~v  159 (379)
                                       ....+..|++++++++|++++.++. + +.+. +|++   +.+|.||.|.|.....
T Consensus       186 -----------------~~~l~~~gV~v~~~~~v~~i~~~~~-~-v~~~-~g~~---i~~D~vi~a~G~~p~~  235 (427)
T TIGR03385       186 -----------------EEELKKHEINLRLNEEVDSIEGEER-V-KVFT-SGGV---YQADMVILATGIKPNS  235 (427)
T ss_pred             -----------------HHHHHHcCCEEEeCCEEEEEecCCC-E-EEEc-CCCE---EEeCEEEECCCccCCH
Confidence                             1111225889999999999976543 3 4555 7877   9999999999988654

Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.

>PLN02676 polyamine oxidase

Probab=97.74  E-value=4e-05  Score=77.43  Aligned_cols=43  Identities=14%  Similarity=0.101  Sum_probs=38.3

Q ss_pred             CCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEEEecCCCCh
Q psy9141         111 DCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAYS  157 (379)
Q Consensus       111 gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlVV~AdG~~S  157 (379)
                      +.+|+++++|++|+.++++|+|++. +|++   ++||.||.|.....
T Consensus       244 ~~~I~l~~~V~~I~~~~~gV~V~~~-~G~~---~~a~~VIvtvPl~v  286 (487)
T PLN02676        244 DPRLKLNKVVREISYSKNGVTVKTE-DGSV---YRAKYVIVSVSLGV  286 (487)
T ss_pred             CCceecCCEeeEEEEcCCcEEEEEC-CCCE---EEeCEEEEccChHH
Confidence            3679999999999999999999998 8987   99999999997554

>PRK09564 coenzyme A disulfide reductase; Reviewed

Probab=97.71  E-value=0.00042  Score=69.21  Aligned_cols=98  Identities=15%  Similarity=0.183  Sum_probs=66.5

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeEEE
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARMIH   86 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~   86 (379)
                      .+|+|||||++|+-+|..|++.|.+|+++++.+..-..          .+.+...+.+                      
T Consensus       150 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~----------~~~~~~~~~l----------------------  197 (444)
T PRK09564        150 KNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLEDRILPD----------SFDKEITDVM----------------------  197 (444)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCcEEEEeCCcccCch----------hcCHHHHHHH----------------------
Confidence            57999999999999999999999999999876532100          0111111000                      


Q ss_pred             ecCCcEEEeeCCCCCcHHHHhcCCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEEEecCCCChH
Q psy9141          87 GQNGKLREIPYDPVHNQVELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAYSG  158 (379)
Q Consensus        87 ~~~g~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlVV~AdG~~S~  158 (379)
                                       ....+..++++++++++++++.+++...+.+  ++.+   +.+|+||.|.|....
T Consensus       198 -----------------~~~l~~~gI~v~~~~~v~~i~~~~~~~~v~~--~~~~---i~~d~vi~a~G~~p~  247 (444)
T PRK09564        198 -----------------EEELRENGVELHLNEFVKSLIGEDKVEGVVT--DKGE---YEADVVIVATGVKPN  247 (444)
T ss_pred             -----------------HHHHHHCCCEEEcCCEEEEEecCCcEEEEEe--CCCE---EEcCEEEECcCCCcC
Confidence                             1112235789999999999965443333444  4445   899999999998754

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=97.70  E-value=4.5e-05  Score=76.40  Aligned_cols=37  Identities=30%  Similarity=0.431  Sum_probs=34.0

Q ss_pred             CCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCC
Q psy9141           5 SKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDI   41 (379)
Q Consensus         5 ~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~   41 (379)
                      +.++|+||||||+|+++|..|++.|++|+|+|+.+.+
T Consensus       132 ~~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~~  168 (449)
T TIGR01316       132 THKKVAVIGAGPAGLACASELAKAGHSVTVFEALHKP  168 (449)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence            4579999999999999999999999999999998654

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>PRK02106 choline dehydrogenase; Validated

Probab=97.70  E-value=4.2e-05  Score=78.79  Aligned_cols=38  Identities=26%  Similarity=0.363  Sum_probs=34.4

Q ss_pred             CCCCCCCcEEEECCChHHHHHHHHHHh-CCCcEEEEccCC
Q psy9141           1 MKCNSKKSVVIVGGGLVGSLSACMFAK-NQYEVNLYEARE   39 (379)
Q Consensus         1 M~~m~~~dVvIVGaGpaGl~~A~~La~-~G~~V~viE~~~   39 (379)
                      |+ ..+||+||||+|++|+.+|..|++ .|++|+|||+.+
T Consensus         1 ~~-~~~~D~iIVG~G~aG~vvA~rLae~~g~~VlvlEaG~   39 (560)
T PRK02106          1 MT-TMEYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGG   39 (560)
T ss_pred             CC-CCcCcEEEECCcHHHHHHHHHHHhCCCCeEEEecCCC
Confidence            44 346999999999999999999999 799999999995

>PTZ00052 thioredoxin reductase; Provisional

Probab=97.70  E-value=0.00044  Score=70.23  Aligned_cols=99  Identities=13%  Similarity=0.163  Sum_probs=72.1

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeEEE
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARMIH   86 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~   86 (379)
                      .+++|||||+.|+-+|..|++.|.+|+|+++.....            .+.+...+.++                     
T Consensus       183 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~l~------------~~d~~~~~~l~---------------------  229 (499)
T PTZ00052        183 GKTLIVGASYIGLETAGFLNELGFDVTVAVRSIPLR------------GFDRQCSEKVV---------------------  229 (499)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCcccc------------cCCHHHHHHHH---------------------
Confidence            479999999999999999999999999998642110            01121111110                     


Q ss_pred             ecCCcEEEeeCCCCCcHHHHhcCCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEEEecCCCChHHH
Q psy9141          87 GQNGKLREIPYDPVHNQVELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAYSGVR  160 (379)
Q Consensus        87 ~~~g~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlVV~AdG~~S~vr  160 (379)
                                       ..+. ..+++++.++.+++++..++.+.+.+. +|++   +.+|.||.|.|+.+.+.
T Consensus       230 -----------------~~l~-~~GV~i~~~~~v~~v~~~~~~~~v~~~-~g~~---i~~D~vl~a~G~~pn~~  281 (499)
T PTZ00052        230 -----------------EYMK-EQGTLFLEGVVPINIEKMDDKIKVLFS-DGTT---ELFDTVLYATGRKPDIK  281 (499)
T ss_pred             -----------------HHHH-HcCCEEEcCCeEEEEEEcCCeEEEEEC-CCCE---EEcCEEEEeeCCCCCcc
Confidence                             1111 247889999988888876666777777 8887   89999999999998765

>PRK14694 putative mercuric reductase; Provisional

Probab=97.69  E-value=0.00053  Score=69.07  Aligned_cols=98  Identities=13%  Similarity=0.134  Sum_probs=69.9

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeEEE
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARMIH   86 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~   86 (379)
                      .+|+|||+|++|+-+|..|++.|.+|+++++......            ..+.....+                      
T Consensus       179 ~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~~~l~~------------~~~~~~~~l----------------------  224 (468)
T PRK14694        179 ERLLVIGASVVALELAQAFARLGSRVTVLARSRVLSQ------------EDPAVGEAI----------------------  224 (468)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEECCCCCCC------------CCHHHHHHH----------------------
Confidence            4799999999999999999999999999986421100            011110000                      


Q ss_pred             ecCCcEEEeeCCCCCcHHHHhcCCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEEEecCCCChHHH
Q psy9141          87 GQNGKLREIPYDPVHNQVELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAYSGVR  160 (379)
Q Consensus        87 ~~~g~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlVV~AdG~~S~vr  160 (379)
                                       ....+..|++++.++++++++.+++.+.+.+. ++ +   +++|.||.|.|+.+.+.
T Consensus       225 -----------------~~~l~~~GI~v~~~~~v~~i~~~~~~~~v~~~-~~-~---i~~D~vi~a~G~~pn~~  276 (468)
T PRK14694        225 -----------------EAAFRREGIEVLKQTQASEVDYNGREFILETN-AG-T---LRAEQLLVATGRTPNTE  276 (468)
T ss_pred             -----------------HHHHHhCCCEEEeCCEEEEEEEcCCEEEEEEC-CC-E---EEeCEEEEccCCCCCcC
Confidence                             11122358999999999999877766666654 44 4   89999999999988654

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=97.68  E-value=4.8e-05  Score=79.77  Aligned_cols=37  Identities=32%  Similarity=0.541  Sum_probs=33.9

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCC
Q psy9141           6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIR   42 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~   42 (379)
                      ..+|+||||||+||++|..|++.|++|+|+|+.+...
T Consensus       327 ~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~G  363 (654)
T PRK12769        327 DKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIG  363 (654)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCC
Confidence            5699999999999999999999999999999987553

>PRK09853 putative selenate reductase subunit YgfK; Provisional

Probab=97.68  E-value=4.6e-05  Score=81.99  Aligned_cols=36  Identities=28%  Similarity=0.532  Sum_probs=33.4

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCC
Q psy9141           6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDI   41 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~   41 (379)
                      ..+|+||||||||+++|+.|++.|++|+|+|+.+.+
T Consensus       539 gKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~  574 (1019)
T PRK09853        539 RKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENA  574 (1019)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCeEEEEeccccc
Confidence            468999999999999999999999999999998755

>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]

Probab=97.68  E-value=4.7e-05  Score=74.16  Aligned_cols=36  Identities=36%  Similarity=0.570  Sum_probs=34.0

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCC
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIR   42 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~   42 (379)
                      -+++|||||++|+.+|+.|++.|++|.++||.+...
T Consensus       125 ~svLVIGGGvAGitAAl~La~~G~~v~LVEKepsiG  160 (622)
T COG1148         125 KSVLVIGGGVAGITAALELADMGFKVYLVEKEPSIG  160 (622)
T ss_pred             cceEEEcCcHHHHHHHHHHHHcCCeEEEEecCCccc
Confidence            489999999999999999999999999999998775

>TIGR01423 trypano_reduc trypanothione-disulfide reductase

Probab=97.67  E-value=0.00047  Score=69.66  Aligned_cols=100  Identities=19%  Similarity=0.218  Sum_probs=70.1

Q ss_pred             CcEEEECCChHHHHHHHHHHh---CCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceee
Q psy9141           7 KSVVIVGGGLVGSLSACMFAK---NQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRAR   83 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~---~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~   83 (379)
                      .+++|||||+.|+-+|..++.   .|.+|+|+|+.+.....           +.+...+.+.                  
T Consensus       188 ~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~il~~-----------~d~~~~~~l~------------------  238 (486)
T TIGR01423       188 RRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMILRG-----------FDSTLRKELT------------------  238 (486)
T ss_pred             CeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCccccc-----------cCHHHHHHHH------------------
Confidence            579999999999999976654   49999999987643210           1111111100                  


Q ss_pred             EEEecCCcEEEeeCCCCCcHHHHhcCCCCeEEeCceEEEEEecCCe-EEEEEccCCceeEEEeecEEEecCCCChHHH
Q psy9141          84 MIHGQNGKLREIPYDPVHNQVELEQYPDCNIYFQHKLINLDVNSGN-VTFYRTEDNSETKITDNQLIIGADGAYSGVR  160 (379)
Q Consensus        84 ~~~~~~g~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~-v~v~~~~~G~~~~~i~adlVV~AdG~~S~vr  160 (379)
                                          ..+. ..|+++++++.+++++.++++ ..+.+. +|++   +++|.||.|.|+...+.
T Consensus       239 --------------------~~L~-~~GI~i~~~~~v~~i~~~~~~~~~v~~~-~g~~---i~~D~vl~a~G~~Pn~~  291 (486)
T TIGR01423       239 --------------------KQLR-ANGINIMTNENPAKVTLNADGSKHVTFE-SGKT---LDVDVVMMAIGRVPRTQ  291 (486)
T ss_pred             --------------------HHHH-HcCCEEEcCCEEEEEEEcCCceEEEEEc-CCCE---EEcCEEEEeeCCCcCcc
Confidence                                1122 257889999999999865443 566776 7776   99999999999987664

Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.

>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO)

Probab=97.67  E-value=8.4e-05  Score=72.82  Aligned_cols=48  Identities=15%  Similarity=0.133  Sum_probs=39.9

Q ss_pred             CCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEEEecCCCChHHH
Q psy9141         109 YPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAYSGVR  160 (379)
Q Consensus       109 ~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlVV~AdG~~S~vr  160 (379)
                      ..+.+|+++++|++|+.+++++++.+. +|++   ++||.||.|.......+
T Consensus       221 ~~g~~i~l~~~V~~I~~~~~~v~v~~~-~g~~---~~ad~VI~a~p~~~l~~  268 (450)
T PF01593_consen  221 ELGGEIRLNTPVTRIEREDGGVTVTTE-DGET---IEADAVISAVPPSVLKN  268 (450)
T ss_dssp             HHGGGEESSEEEEEEEEESSEEEEEET-TSSE---EEESEEEE-S-HHHHHT
T ss_pred             hcCceeecCCcceeccccccccccccc-cceE---EecceeeecCchhhhhh
Confidence            345689999999999999999999999 9987   99999999987766554

The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....

>PTZ00188 adrenodoxin reductase; Provisional

Probab=97.67  E-value=6.3e-05  Score=74.89  Aligned_cols=38  Identities=16%  Similarity=0.224  Sum_probs=33.3

Q ss_pred             CCCcEEEECCChHHHHHHHHH-HhCCCcEEEEccCCCCC
Q psy9141           5 SKKSVVIVGGGLVGSLSACMF-AKNQYEVNLYEAREDIR   42 (379)
Q Consensus         5 ~~~dVvIVGaGpaGl~~A~~L-a~~G~~V~viE~~~~~~   42 (379)
                      ....|+||||||+|+.+|..| ++.|++|+|+|+.+.+.
T Consensus        38 ~~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pg   76 (506)
T PTZ00188         38 KPFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPY   76 (506)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCc
Confidence            356899999999999999976 56799999999999775

>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated

Probab=97.67  E-value=5.1e-05  Score=74.95  Aligned_cols=34  Identities=32%  Similarity=0.440  Sum_probs=32.2

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCcEEEEccCC
Q psy9141           6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEARE   39 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~   39 (379)
                      ++||+|||+|++|+++|+.|+++|.+|+|||+..
T Consensus         2 ~~DviIIG~G~aGl~aA~~la~~g~~v~vi~~~~   35 (422)
T PRK05329          2 KFDVLVIGGGLAGLTAALAAAEAGKRVALVAKGQ   35 (422)
T ss_pred             CCCEEEECccHHHHHHHHHHHHCCCcEEEEECCC
Confidence            4899999999999999999999999999999874

>PRK14727 putative mercuric reductase; Provisional

Probab=97.66  E-value=0.00058  Score=69.02  Aligned_cols=98  Identities=10%  Similarity=0.099  Sum_probs=70.9

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeEEE
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARMIH   86 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~   86 (379)
                      .+|+|||+|+.|+-+|..|++.|.+|+++++.....       .     +.+...+.+                      
T Consensus       189 k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~~~l~-------~-----~d~~~~~~l----------------------  234 (479)
T PRK14727        189 ASLTVIGSSVVAAEIAQAYARLGSRVTILARSTLLF-------R-----EDPLLGETL----------------------  234 (479)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCCCC-------c-----chHHHHHHH----------------------
Confidence            479999999999999999999999999998642110       0     111100000                      


Q ss_pred             ecCCcEEEeeCCCCCcHHHHhcCCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEEEecCCCChHHH
Q psy9141          87 GQNGKLREIPYDPVHNQVELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAYSGVR  160 (379)
Q Consensus        87 ~~~g~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlVV~AdG~~S~vr  160 (379)
                                       ....+..|++++++++|++++.+++.+.+... ++ +   +.+|.||.|.|+.+.+.
T Consensus       235 -----------------~~~L~~~GV~i~~~~~V~~i~~~~~~~~v~~~-~g-~---i~aD~VlvA~G~~pn~~  286 (479)
T PRK14727        235 -----------------TACFEKEGIEVLNNTQASLVEHDDNGFVLTTG-HG-E---LRAEKLLISTGRHANTH  286 (479)
T ss_pred             -----------------HHHHHhCCCEEEcCcEEEEEEEeCCEEEEEEc-CC-e---EEeCEEEEccCCCCCcc
Confidence                             11112358999999999999877777777665 55 3   88999999999998664

>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]

Probab=97.66  E-value=6.4e-05  Score=69.78  Aligned_cols=37  Identities=32%  Similarity=0.373  Sum_probs=34.8

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCC
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRN   43 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~   43 (379)
                      +|++|||||.+|+.+|..|++.|.+|.|+||++..+.
T Consensus         2 fd~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~HIGG   38 (374)
T COG0562           2 FDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNHIGG   38 (374)
T ss_pred             CcEEEECCchhHHHHHHHHHHcCCEEEEEeccccCCC
Confidence            6999999999999999999999999999999997764

>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated

Probab=97.65  E-value=4.7e-05  Score=81.14  Aligned_cols=34  Identities=12%  Similarity=0.203  Sum_probs=31.7

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCcEEEEccCC
Q psy9141           6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEARE   39 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~   39 (379)
                      ..+|+||||||||+++|+.|++.|++|+|+|+.+
T Consensus       383 gKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~~  416 (1028)
T PRK06567        383 NYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGLK  416 (1028)
T ss_pred             CCeEEEECcCHHHHHHHHHHHhCCCeEEEEcccc
Confidence            4689999999999999999999999999999853

>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional

Probab=97.65  E-value=5.2e-05  Score=82.80  Aligned_cols=37  Identities=30%  Similarity=0.375  Sum_probs=33.9

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCC
Q psy9141           6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIR   42 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~   42 (379)
                      ..+|+|||||||||++|..|++.|++|+|+|+.+.+.
T Consensus       430 ~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~~G  466 (1006)
T PRK12775        430 LGKVAICGSGPAGLAAAADLVKYGVDVTVYEALHVVG  466 (1006)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCc
Confidence            4699999999999999999999999999999987553

>PRK13512 coenzyme A disulfide reductase; Provisional

Probab=97.65  E-value=0.00051  Score=68.57  Aligned_cols=95  Identities=8%  Similarity=0.123  Sum_probs=67.7

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeEEE
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARMIH   86 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~   86 (379)
                      -+|+|||||++|+-+|..|++.|.+|+++|+.+....           .+.+...+.+                      
T Consensus       149 ~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~~-----------~~d~~~~~~l----------------------  195 (438)
T PRK13512        149 DKALVVGAGYISLEVLENLYERGLHPTLIHRSDKINK-----------LMDADMNQPI----------------------  195 (438)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCcEEEEecccccch-----------hcCHHHHHHH----------------------
Confidence            4799999999999999999999999999998763311           0111110000                      


Q ss_pred             ecCCcEEEeeCCCCCcHHHHhcCCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEEEecCCCChHH
Q psy9141          87 GQNGKLREIPYDPVHNQVELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAYSGV  159 (379)
Q Consensus        87 ~~~g~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlVV~AdG~~S~v  159 (379)
                                       ....+..|++++++++|++++.  .  .+++. +|++   +++|.||.|.|+...+
T Consensus       196 -----------------~~~l~~~gI~i~~~~~v~~i~~--~--~v~~~-~g~~---~~~D~vl~a~G~~pn~  243 (438)
T PRK13512        196 -----------------LDELDKREIPYRLNEEIDAING--N--EVTFK-SGKV---EHYDMIIEGVGTHPNS  243 (438)
T ss_pred             -----------------HHHHHhcCCEEEECCeEEEEeC--C--EEEEC-CCCE---EEeCEEEECcCCCcCh
Confidence                             1111235889999999999863  2  35556 7876   8999999999988654

>PRK12810 gltD glutamate synthase subunit beta; Reviewed

Probab=97.64  E-value=7.3e-05  Score=75.32  Aligned_cols=37  Identities=30%  Similarity=0.448  Sum_probs=34.0

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCC
Q psy9141           6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIR   42 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~   42 (379)
                      ..+|+||||||+|+++|..|++.|++|+|+|+.+...
T Consensus       143 ~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~G  179 (471)
T PRK12810        143 GKKVAVVGSGPAGLAAADQLARAGHKVTVFERADRIG  179 (471)
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCC
Confidence            4699999999999999999999999999999987553

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=97.63  E-value=0.00012  Score=73.65  Aligned_cols=36  Identities=25%  Similarity=0.479  Sum_probs=33.5

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCC
Q psy9141           6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDI   41 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~   41 (379)
                      ..+|+||||||+|+++|..|++.|++|+|+|+.+..
T Consensus       141 ~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~  176 (467)
T TIGR01318       141 GKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEI  176 (467)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCC
Confidence            468999999999999999999999999999998755

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

Probab=97.62  E-value=6.4e-05  Score=80.10  Aligned_cols=36  Identities=36%  Similarity=0.551  Sum_probs=33.2

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCC
Q psy9141           6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDI   41 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~   41 (379)
                      ..+|+||||||||+++|..|++.|++|+|+|+.+.+
T Consensus       431 ~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~~~  466 (752)
T PRK12778        431 GKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHEI  466 (752)
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence            569999999999999999999999999999987644

>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]

Probab=97.61  E-value=0.00055  Score=67.05  Aligned_cols=99  Identities=25%  Similarity=0.322  Sum_probs=71.2

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeEEE
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARMIH   86 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~   86 (379)
                      .+++|||+|++|+.+|..|+++|++|+++|+.+.....      .    +.+...+.+                      
T Consensus       137 ~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~~~~------~----~~~~~~~~~----------------------  184 (415)
T COG0446         137 KDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQ------L----LDPEVAEEL----------------------  184 (415)
T ss_pred             CeEEEECCcHHHHHHHHHHHHcCCeEEEEEcccccchh------h----hhHHHHHHH----------------------
Confidence            58999999999999999999999999999998765321      0    001111111                      


Q ss_pred             ecCCcEEEeeCCCCCcHHHHhcCCCCeEEeCceEEEEEecCCeEE---EEEccCCceeEEEeecEEEecCCCChH
Q psy9141          87 GQNGKLREIPYDPVHNQVELEQYPDCNIYFQHKLINLDVNSGNVT---FYRTEDNSETKITDNQLIIGADGAYSG  158 (379)
Q Consensus        87 ~~~g~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~v~---v~~~~~G~~~~~i~adlVV~AdG~~S~  158 (379)
                                       ....+..+++++++.++++++...+...   +... ++..   +.+|+++.+.|....
T Consensus       185 -----------------~~~l~~~gi~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~~---~~~d~~~~~~g~~p~  238 (415)
T COG0446         185 -----------------AELLEKYGVELLLGTKVVGVEGKGNTLVVERVVGI-DGEE---IKADLVIIGPGERPN  238 (415)
T ss_pred             -----------------HHHHHHCCcEEEeCCceEEEEcccCcceeeEEEEe-CCcE---EEeeEEEEeeccccc
Confidence                             1111224688889999999988776544   4555 7776   999999999998764

>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

Probab=97.61  E-value=0.00044  Score=67.42  Aligned_cols=107  Identities=21%  Similarity=0.272  Sum_probs=68.9

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCC--CcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceee
Q psy9141           6 KKSVVIVGGGLVGSLSACMFAKNQ--YEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRAR   83 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La~~G--~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~   83 (379)
                      ...|||||||.+|+.+|..|.++.  .+|++||+++.....             |.          ..++.......   
T Consensus         3 ~~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~hl~~-------------pl----------L~eva~g~l~~---   56 (405)
T COG1252           3 KKRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYHLFT-------------PL----------LYEVATGTLSE---   56 (405)
T ss_pred             CceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCccccc-------------hh----------hhhhhcCCCCh---
Confidence            358999999999999999999985  899999998744221             10          01111000000   


Q ss_pred             EEEecCCcEEEeeCCCCCcHHHHhcCCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEEEecCCCCh
Q psy9141          84 MIHGQNGKLREIPYDPVHNQVELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAYS  157 (379)
Q Consensus        84 ~~~~~~g~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlVV~AdG~~S  157 (379)
                            +. ...++.     .......++++..+ +|++|+.++..|++.   ++..   +..|++|.|.|..+
T Consensus        57 ------~~-i~~p~~-----~~~~~~~~v~~~~~-~V~~ID~~~k~V~~~---~~~~---i~YD~LVvalGs~~  111 (405)
T COG1252          57 ------SE-IAIPLR-----ALLRKSGNVQFVQG-EVTDIDRDAKKVTLA---DLGE---ISYDYLVVALGSET  111 (405)
T ss_pred             ------hh-eeccHH-----HHhcccCceEEEEE-EEEEEcccCCEEEeC---CCcc---ccccEEEEecCCcC
Confidence                  00 111111     22332345777765 799999988887665   5455   99999999999875

>PTZ00058 glutathione reductase; Provisional

Probab=97.60  E-value=0.00078  Score=69.17  Aligned_cols=101  Identities=14%  Similarity=0.177  Sum_probs=70.8

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeEE
Q psy9141           6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARMI   85 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~~   85 (379)
                      ..+|+|||||+.|+-+|..|++.|.+|+++|+.+....           .+.+...+.+.                    
T Consensus       237 pk~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~~il~-----------~~d~~i~~~l~--------------------  285 (561)
T PTZ00058        237 AKRIGIAGSGYIAVELINVVNRLGAESYIFARGNRLLR-----------KFDETIINELE--------------------  285 (561)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHcCCcEEEEEecccccc-----------cCCHHHHHHHH--------------------
Confidence            35799999999999999999999999999998763311           01111111110                    


Q ss_pred             EecCCcEEEeeCCCCCcHHHHhcCCCCeEEeCceEEEEEecCC-eEEEEEccCC-ceeEEEeecEEEecCCCChHHH
Q psy9141          86 HGQNGKLREIPYDPVHNQVELEQYPDCNIYFQHKLINLDVNSG-NVTFYRTEDN-SETKITDNQLIIGADGAYSGVR  160 (379)
Q Consensus        86 ~~~~g~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~-~v~v~~~~~G-~~~~~i~adlVV~AdG~~S~vr  160 (379)
                                        ..+. ..|+++++++++++++.+++ ++.+... ++ ++   +++|.||.|.|+...+.
T Consensus       286 ------------------~~L~-~~GV~i~~~~~V~~I~~~~~~~v~v~~~-~~~~~---i~aD~VlvA~Gr~Pn~~  339 (561)
T PTZ00058        286 ------------------NDMK-KNNINIITHANVEEIEKVKEKNLTIYLS-DGRKY---EHFDYVIYCVGRSPNTE  339 (561)
T ss_pred             ------------------HHHH-HCCCEEEeCCEEEEEEecCCCcEEEEEC-CCCEE---EECCEEEECcCCCCCcc
Confidence                              1111 25888999999999986543 4665554 44 34   99999999999987654

>PRK13748 putative mercuric reductase; Provisional

Probab=97.59  E-value=0.0007  Score=69.79  Aligned_cols=98  Identities=13%  Similarity=0.118  Sum_probs=70.6

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeEEE
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARMIH   86 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~   86 (379)
                      .+|+|||||+.|+-+|..|++.|.+|+|+++.....       .     ..+...+.+                      
T Consensus       271 ~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~-------~-----~d~~~~~~l----------------------  316 (561)
T PRK13748        271 ERLAVIGSSVVALELAQAFARLGSKVTILARSTLFF-------R-----EDPAIGEAV----------------------  316 (561)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCEEEEEecCcccc-------c-----cCHHHHHHH----------------------
Confidence            479999999999999999999999999999753110       0     011111100                      


Q ss_pred             ecCCcEEEeeCCCCCcHHHHhcCCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEEEecCCCChHHH
Q psy9141          87 GQNGKLREIPYDPVHNQVELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAYSGVR  160 (379)
Q Consensus        87 ~~~g~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlVV~AdG~~S~vr  160 (379)
                                       ....+..|+++++++++++++.+++.+.+.+. ++ +   +.+|.||.|.|+...+.
T Consensus       317 -----------------~~~l~~~gI~i~~~~~v~~i~~~~~~~~v~~~-~~-~---i~~D~vi~a~G~~pn~~  368 (561)
T PRK13748        317 -----------------TAAFRAEGIEVLEHTQASQVAHVDGEFVLTTG-HG-E---LRADKLLVATGRAPNTR  368 (561)
T ss_pred             -----------------HHHHHHCCCEEEcCCEEEEEEecCCEEEEEec-CC-e---EEeCEEEEccCCCcCCC
Confidence                             11112258899999999999877777777665 54 4   89999999999987664

>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein

Probab=97.59  E-value=0.00077  Score=68.16  Aligned_cols=101  Identities=16%  Similarity=0.135  Sum_probs=70.4

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeEEE
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARMIH   86 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~   86 (379)
                      -+++|||||+.|+-+|..|++.|.+|+|+++.....            .+.+.....++                     
T Consensus       181 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~l~------------~~d~~~~~~l~---------------------  227 (484)
T TIGR01438       181 GKTLVVGASYVALECAGFLAGIGLDVTVMVRSILLR------------GFDQDCANKVG---------------------  227 (484)
T ss_pred             CCEEEECCCHHHHHHHHHHHHhCCcEEEEEeccccc------------ccCHHHHHHHH---------------------
Confidence            479999999999999999999999999998642110            01111111100                     


Q ss_pred             ecCCcEEEeeCCCCCcHHHHhcCCCCeEEeCceEEEEEecCCeEEEEEccCCc-eeEEEeecEEEecCCCChHHH
Q psy9141          87 GQNGKLREIPYDPVHNQVELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNS-ETKITDNQLIIGADGAYSGVR  160 (379)
Q Consensus        87 ~~~g~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~-~~~~i~adlVV~AdG~~S~vr  160 (379)
                                       ..+. ..|+++++++.+++++..++.+.+++. +|+ ..+ +++|.||.|.|+...+.
T Consensus       228 -----------------~~L~-~~gV~i~~~~~v~~v~~~~~~~~v~~~-~~~~~~~-i~~D~vl~a~G~~pn~~  282 (484)
T TIGR01438       228 -----------------EHME-EHGVKFKRQFVPIKVEQIEAKVKVTFT-DSTNGIE-EEYDTVLLAIGRDACTR  282 (484)
T ss_pred             -----------------HHHH-HcCCEEEeCceEEEEEEcCCeEEEEEe-cCCcceE-EEeCEEEEEecCCcCCC
Confidence                             1122 248889999988888876666667666 553 123 99999999999987654

This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.

>PLN02529 lysine-specific histone demethylase 1

Probab=97.58  E-value=8.2e-05  Score=78.08  Aligned_cols=37  Identities=32%  Similarity=0.469  Sum_probs=34.0

Q ss_pred             CCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCC
Q psy9141           5 SKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDI   41 (379)
Q Consensus         5 ~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~   41 (379)
                      ...||+|||||++|+++|..|+++|++|+|+|+++..
T Consensus       159 ~~~~v~viGaG~aGl~aA~~l~~~g~~v~v~E~~~~~  195 (738)
T PLN02529        159 TEGSVIIVGAGLAGLAAARQLLSFGFKVVVLEGRNRP  195 (738)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHcCCcEEEEecCccC
Confidence            4579999999999999999999999999999998743

>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional

Probab=97.56  E-value=9e-05  Score=74.38  Aligned_cols=36  Identities=33%  Similarity=0.643  Sum_probs=33.5

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCC
Q psy9141           6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDI   41 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~   41 (379)
                      ..+|+||||||+|+++|..|++.|++|+|+|+.+..
T Consensus       140 ~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~~  175 (457)
T PRK11749        140 GKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKA  175 (457)
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCC
Confidence            468999999999999999999999999999998754

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=97.54  E-value=0.00017  Score=75.47  Aligned_cols=37  Identities=22%  Similarity=0.463  Sum_probs=34.2

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCC
Q psy9141           6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIR   42 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~   42 (379)
                      ..+|+||||||+|+++|..|++.|++|+|+|+.+...
T Consensus       310 ~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~G  346 (639)
T PRK12809        310 SEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIG  346 (639)
T ss_pred             CCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCC
Confidence            5789999999999999999999999999999998653

>COG3573 Predicted oxidoreductase [General function prediction only]

Probab=97.54  E-value=0.00011  Score=68.49  Aligned_cols=38  Identities=24%  Similarity=0.401  Sum_probs=35.0

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCC
Q psy9141           4 NSKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDI   41 (379)
Q Consensus         4 m~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~   41 (379)
                      +.++||+|||||.+||.+|..|+.+|.+|+|+|+..+.
T Consensus         3 ~~~~dvivvgaglaglvaa~elA~aG~~V~ildQEgeq   40 (552)
T COG3573           3 GLTADVIVVGAGLAGLVAAAELADAGKRVLILDQEGEQ   40 (552)
T ss_pred             cccccEEEECccHHHHHHHHHHHhcCceEEEEcccccc
Confidence            55789999999999999999999999999999988754

>PTZ00153 lipoamide dehydrogenase; Provisional

Probab=97.52  E-value=0.00093  Score=69.73  Aligned_cols=104  Identities=16%  Similarity=0.143  Sum_probs=69.7

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeEEE
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARMIH   86 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~   86 (379)
                      -+|+|||||++|+-+|..|++.|.+|+++|+.+.....           +.+...+.+.                     
T Consensus       313 k~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~~ll~~-----------~d~eis~~l~---------------------  360 (659)
T PTZ00153        313 NYMGIVGMGIIGLEFMDIYTALGSEVVSFEYSPQLLPL-----------LDADVAKYFE---------------------  360 (659)
T ss_pred             CceEEECCCHHHHHHHHHHHhCCCeEEEEeccCccccc-----------CCHHHHHHHH---------------------
Confidence            47999999999999999999999999999987643210           1111111110                     


Q ss_pred             ecCCcEEEeeCCCCCcHHHHhcCCCCeEEeCceEEEEEecCCe--EEEEEcc------CC------ceeEEEeecEEEec
Q psy9141          87 GQNGKLREIPYDPVHNQVELEQYPDCNIYFQHKLINLDVNSGN--VTFYRTE------DN------SETKITDNQLIIGA  152 (379)
Q Consensus        87 ~~~g~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~--v~v~~~~------~G------~~~~~i~adlVV~A  152 (379)
                                       ....+..+++++.++.|++++.+++.  +++.+.+      ++      +..+ +++|.||.|
T Consensus       361 -----------------~~ll~~~GV~I~~~~~V~~I~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~-i~aD~VlvA  422 (659)
T PTZ00153        361 -----------------RVFLKSKPVRVHLNTLIEYVRAGKGNQPVIIGHSERQTGESDGPKKNMNDIKE-TYVDSCLVA  422 (659)
T ss_pred             -----------------HHHhhcCCcEEEcCCEEEEEEecCCceEEEEEEeccccccccccccccccceE-EEcCEEEEE
Confidence                             11112357899999999999866543  5554420      11      1124 999999999


Q ss_pred             CCCChHHH
Q psy9141         153 DGAYSGVR  160 (379)
Q Consensus       153 dG~~S~vr  160 (379)
                      .|+...+.
T Consensus       423 tGr~Pnt~  430 (659)
T PTZ00153        423 TGRKPNTN  430 (659)
T ss_pred             ECcccCCc
Confidence            99987654

>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]

Probab=97.52  E-value=0.00011  Score=68.48  Aligned_cols=34  Identities=21%  Similarity=0.362  Sum_probs=32.0

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCcEEEEccCC
Q psy9141           6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEARE   39 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~   39 (379)
                      ++||+|||||+||++||+.|+++|.++.||-+..
T Consensus         2 ~fDv~IIGGGLAGltc~l~l~~~Gk~c~iv~~gQ   35 (421)
T COG3075           2 NFDVAIIGGGLAGLTCGLALQQAGKRCAIVNRGQ   35 (421)
T ss_pred             cccEEEEcCcHHHHHHHHHHHhcCCcEEEEeCCh
Confidence            4899999999999999999999999999998775

>PLN02328 lysine-specific histone demethylase 1 homolog

Probab=97.51  E-value=0.00011  Score=77.52  Aligned_cols=38  Identities=29%  Similarity=0.437  Sum_probs=34.5

Q ss_pred             CCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCC
Q psy9141           5 SKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIR   42 (379)
Q Consensus         5 ~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~   42 (379)
                      ...+|+|||||++|+++|+.|++.|++|+|+|++..+.
T Consensus       237 ~~~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E~~~r~G  274 (808)
T PLN02328        237 EPANVVVVGAGLAGLVAARQLLSMGFKVVVLEGRARPG  274 (808)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeccccCC
Confidence            35799999999999999999999999999999987553

>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain

Probab=97.49  E-value=0.0006  Score=66.69  Aligned_cols=47  Identities=13%  Similarity=0.278  Sum_probs=41.3

Q ss_pred             hcCCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEEEecCCCChH
Q psy9141         107 EQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAYSG  158 (379)
Q Consensus       107 ~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlVV~AdG~~S~  158 (379)
                      ... |++++++++|++++.+++++.+++. +|+.   ++||.||.|+|.++.
T Consensus       145 ~~~-G~~i~~~~~V~~i~~~~~~~~v~t~-~g~~---~~a~~vV~a~G~~~~  191 (381)
T TIGR03197       145 AGI-RLTLHFNTEITSLERDGEGWQLLDA-NGEV---IAASVVVLANGAQAG  191 (381)
T ss_pred             cCC-CcEEEeCCEEEEEEEcCCeEEEEeC-CCCE---EEcCEEEEcCCcccc
Confidence            344 8999999999999988888888888 8876   899999999999984

In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.

>PTZ00153 lipoamide dehydrogenase; Provisional

Probab=97.48  E-value=0.00012  Score=76.40  Aligned_cols=33  Identities=21%  Similarity=0.297  Sum_probs=31.8

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCcEEEEccC
Q psy9141           6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAR   38 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~   38 (379)
                      +|||+||||||+|..+|..+++.|.+|+|||++
T Consensus       116 ~yDviVIG~G~gG~~aA~~aa~~G~kV~lie~~  148 (659)
T PTZ00153        116 EYDVGIIGCGVGGHAAAINAMERGLKVIIFTGD  148 (659)
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCC
Confidence            689999999999999999999999999999975

>KOG4254|consensus

Probab=97.38  E-value=0.00047  Score=66.81  Aligned_cols=55  Identities=15%  Similarity=0.295  Sum_probs=45.9

Q ss_pred             HHhcCCCCeEEeCceEEEEEecCCeEE-EEEccCCceeEEEeecEEEecCCCChHHHHHh
Q psy9141         105 ELEQYPDCNIYFQHKLINLDVNSGNVT-FYRTEDNSETKITDNQLIIGADGAYSGVRKCL  163 (379)
Q Consensus       105 ~~~~~~gv~i~~~~~v~~i~~~~~~v~-v~~~~~G~~~~~i~adlVV~AdG~~S~vr~~l  163 (379)
                      ...+..|.+|.+...|.+|..+.+.+. |+++ ||++   ++++.||--.+.+-..-+.+
T Consensus       272 ~~~~~~GaeI~tka~Vq~Illd~gka~GV~L~-dG~e---v~sk~VvSNAt~~~Tf~kLl  327 (561)
T KOG4254|consen  272 EGAKRAGAEIFTKATVQSILLDSGKAVGVRLA-DGTE---VRSKIVVSNATPWDTFEKLL  327 (561)
T ss_pred             HHHHhccceeeehhhhhheeccCCeEEEEEec-CCcE---EEeeeeecCCchHHHHHHhC
Confidence            445567999999999999998887655 7888 9998   99999999888888776665

>KOG2311|consensus

Probab=97.38  E-value=0.00019  Score=69.86  Aligned_cols=35  Identities=29%  Similarity=0.320  Sum_probs=32.0

Q ss_pred             CCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCC
Q psy9141           5 SKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEARE   39 (379)
Q Consensus         5 ~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~   39 (379)
                      ++|||||||||-||+-+|.+.+|.|-+.+++-.+-
T Consensus        27 ~~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~l   61 (679)
T KOG2311|consen   27 STYDVVVIGGGHAGCEAAAAAARLGARTLLLTHNL   61 (679)
T ss_pred             CcccEEEECCCccchHHHHHHHhcCCceEEeeccc
Confidence            46899999999999999999999999999987664

>PTZ00318 NADH dehydrogenase-like protein; Provisional

Probab=97.38  E-value=0.0021  Score=63.91  Aligned_cols=92  Identities=20%  Similarity=0.210  Sum_probs=63.5

Q ss_pred             cEEEECCChHHHHHHHHHHh--------------CCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHH
Q psy9141           8 SVVIVGGGLVGSLSACMFAK--------------NQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKL   73 (379)
Q Consensus         8 dVvIVGaGpaGl~~A~~La~--------------~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l   73 (379)
                      .|+|||||++|+-+|..|+.              .+.+|+++|+.+..-..           +.+...+.++        
T Consensus       175 ~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~ll~~-----------~~~~~~~~~~--------  235 (424)
T PTZ00318        175 HFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEVLGS-----------FDQALRKYGQ--------  235 (424)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCccccc-----------CCHHHHHHHH--------
Confidence            79999999999999999985              47889999877533110           1111100000        


Q ss_pred             HhCCCCceeeEEEecCCcEEEeeCCCCCcHHHHhcCCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEEEecC
Q psy9141          74 LAHGIPMRARMIHGQNGKLREIPYDPVHNQVELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGAD  153 (379)
Q Consensus        74 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlVV~Ad  153 (379)
                                                    +.+ +..|++++.+++|++++.  +.  +.+. +|++   +.+|+||.|.
T Consensus       236 ------------------------------~~L-~~~gV~v~~~~~v~~v~~--~~--v~~~-~g~~---i~~d~vi~~~  276 (424)
T PTZ00318        236 ------------------------------RRL-RRLGVDIRTKTAVKEVLD--KE--VVLK-DGEV---IPTGLVVWST  276 (424)
T ss_pred             ------------------------------HHH-HHCCCEEEeCCeEEEEeC--CE--EEEC-CCCE---EEccEEEEcc
Confidence                                          112 235899999999988864  33  4466 8887   9999999999


Q ss_pred             CCCh
Q psy9141         154 GAYS  157 (379)
Q Consensus       154 G~~S  157 (379)
                      |...
T Consensus       277 G~~~  280 (424)
T PTZ00318        277 GVGP  280 (424)
T ss_pred             CCCC
Confidence            9654

>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]

Probab=97.38  E-value=0.00028  Score=66.23  Aligned_cols=110  Identities=20%  Similarity=0.270  Sum_probs=65.3

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeEE
Q psy9141           6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARMI   85 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~~   85 (379)
                      .|||+||||||+|.++|++.||.|++.-++-.+        +.|.            .|+.+++..-          +.+
T Consensus       211 ~yDVLvVGgGPAgaaAAiYaARKGiRTGl~aer--------fGGQ------------vldT~~IENf----------Isv  260 (520)
T COG3634         211 AYDVLVVGGGPAGAAAAIYAARKGIRTGLVAER--------FGGQ------------VLDTMGIENF----------ISV  260 (520)
T ss_pred             CceEEEEcCCcchhHHHHHHHhhcchhhhhhhh--------hCCe------------eccccchhhe----------ecc
Confidence            599999999999999999999999987554211        0021            1222222110          000


Q ss_pred             EecCCcEEEeeCCCCCcH-HHHhcCCCCeEEeCceEEEEEec---CCeEEEEEccCCceeEEEeecEEEecCCCC
Q psy9141          86 HGQNGKLREIPYDPVHNQ-VELEQYPDCNIYFQHKLINLDVN---SGNVTFYRTEDNSETKITDNQLIIGADGAY  156 (379)
Q Consensus        86 ~~~~g~~~~~~~~~~~~~-~~~~~~~gv~i~~~~~v~~i~~~---~~~v~v~~~~~G~~~~~i~adlVV~AdG~~  156 (379)
                      ....|..    +.   .. ++--+.-.+++....++++++..   ++-..++++ +|..   +.++-||.++|++
T Consensus       261 ~~teGpk----l~---~ale~Hv~~Y~vDimn~qra~~l~~a~~~~~l~ev~l~-nGav---LkaktvIlstGAr  324 (520)
T COG3634         261 PETEGPK----LA---AALEAHVKQYDVDVMNLQRASKLEPAAVEGGLIEVELA-NGAV---LKARTVILATGAR  324 (520)
T ss_pred             ccccchH----HH---HHHHHHHhhcCchhhhhhhhhcceecCCCCccEEEEec-CCce---eccceEEEecCcc
Confidence            0001110    00   00 11112235666666666666653   445778888 9988   8999999999975

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase

Probab=97.37  E-value=0.0019  Score=60.41  Aligned_cols=98  Identities=17%  Similarity=0.174  Sum_probs=67.3

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeEE
Q psy9141           6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARMI   85 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~~   85 (379)
                      ..+|+|||+|++|+-+|..|++.+.+|+++++.+...             ..+             .+            
T Consensus       141 ~~~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~~~~~-------------~~~-------------~~------------  182 (300)
T TIGR01292       141 NKEVAVVGGGDSAIEEALYLTRIAKKVTLVHRRDKFR-------------AEK-------------IL------------  182 (300)
T ss_pred             CCEEEEECCChHHHHHHHHHHhhcCEEEEEEeCcccC-------------cCH-------------HH------------
Confidence            3589999999999999999999999999999864221             000             00            


Q ss_pred             EecCCcEEEeeCCCCCcHHHHhcCCCCeEEeCceEEEEEecCCeEEEEEc--cCCceeEEEeecEEEecCCCChHH
Q psy9141          86 HGQNGKLREIPYDPVHNQVELEQYPDCNIYFQHKLINLDVNSGNVTFYRT--EDNSETKITDNQLIIGADGAYSGV  159 (379)
Q Consensus        86 ~~~~g~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~--~~G~~~~~i~adlVV~AdG~~S~v  159 (379)
                                       ...+.+..++++++++++++++.++....+++.  .+|+..+ +++|.||.|.|.....
T Consensus       183 -----------------~~~l~~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~-i~~D~vi~a~G~~~~~  240 (300)
T TIGR01292       183 -----------------LDRLRKNPNIEFLWNSTVKEIVGDNKVEGVKIKNTVTGEEEE-LKVDGVFIAIGHEPNT  240 (300)
T ss_pred             -----------------HHHHHhCCCeEEEeccEEEEEEccCcEEEEEEEecCCCceEE-EEccEEEEeeCCCCCh
Confidence                             011222248889999999998765532223332  1354445 9999999999977644

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).

>PLN02546 glutathione reductase

Probab=97.35  E-value=0.0022  Score=65.87  Aligned_cols=101  Identities=12%  Similarity=0.214  Sum_probs=69.9

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeEE
Q psy9141           6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARMI   85 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~~   85 (379)
                      .-+|+|||||+.|+-+|..|++.|.+|+|+|+.+....           .+.+.....+.                    
T Consensus       252 ~k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~~il~-----------~~d~~~~~~l~--------------------  300 (558)
T PLN02546        252 PEKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKKVLR-----------GFDEEVRDFVA--------------------  300 (558)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCeEEEEEecccccc-----------ccCHHHHHHHH--------------------
Confidence            35899999999999999999999999999997753310           01111111100                    


Q ss_pred             EecCCcEEEeeCCCCCcHHHHhcCCCCeEEeCceEEEEEecC-CeEEEEEccCCceeEEEeecEEEecCCCChHHH
Q psy9141          86 HGQNGKLREIPYDPVHNQVELEQYPDCNIYFQHKLINLDVNS-GNVTFYRTEDNSETKITDNQLIIGADGAYSGVR  160 (379)
Q Consensus        86 ~~~~g~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~-~~v~v~~~~~G~~~~~i~adlVV~AdG~~S~vr  160 (379)
                                        ..+ +..|++++.++++++++.++ +.+.+.+. +++.   ..+|.||.|.|+...+.
T Consensus       301 ------------------~~L-~~~GV~i~~~~~v~~i~~~~~g~v~v~~~-~g~~---~~~D~Viva~G~~Pnt~  353 (558)
T PLN02546        301 ------------------EQM-SLRGIEFHTEESPQAIIKSADGSLSLKTN-KGTV---EGFSHVMFATGRKPNTK  353 (558)
T ss_pred             ------------------HHH-HHCCcEEEeCCEEEEEEEcCCCEEEEEEC-CeEE---EecCEEEEeeccccCCC
Confidence                              112 23589999999999997643 44556555 5543   55899999999998764

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=97.31  E-value=0.0023  Score=65.33  Aligned_cols=97  Identities=21%  Similarity=0.278  Sum_probs=68.7

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeEEE
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARMIH   86 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~   86 (379)
                      .+|+|||||+.|+-+|..|++.|.+|+++|+.+...               . . ..         +             
T Consensus       353 k~VvViGgG~~g~E~A~~L~~~g~~Vtli~~~~~l~---------------~-~-~~---------l-------------  393 (515)
T TIGR03140       353 KDVAVIGGGNSGIEAAIDLAGIVRHVTVLEFADELK---------------A-D-KV---------L-------------  393 (515)
T ss_pred             CEEEEECCcHHHHHHHHHHHhcCcEEEEEEeCCcCC---------------h-h-HH---------H-------------
Confidence            489999999999999999999999999998654220               0 0 00         0             


Q ss_pred             ecCCcEEEeeCCCCCcHHHHhcCCCCeEEeCceEEEEEecCCeEE-EEEc--cCCceeEEEeecEEEecCCCChHH
Q psy9141          87 GQNGKLREIPYDPVHNQVELEQYPDCNIYFQHKLINLDVNSGNVT-FYRT--EDNSETKITDNQLIIGADGAYSGV  159 (379)
Q Consensus        87 ~~~g~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~v~-v~~~--~~G~~~~~i~adlVV~AdG~~S~v  159 (379)
                                      ...+....|+++++++.+++++.+++.++ +.+.  .+|+..+ +++|.||.|.|....+
T Consensus       394 ----------------~~~l~~~~gV~i~~~~~v~~i~~~~~~v~~v~~~~~~~~~~~~-i~~D~vi~a~G~~Pn~  452 (515)
T TIGR03140       394 ----------------QDKLKSLPNVDILTSAQTTEIVGDGDKVTGIRYQDRNSGEEKQ-LDLDGVFVQIGLVPNT  452 (515)
T ss_pred             ----------------HHHHhcCCCCEEEECCeeEEEEcCCCEEEEEEEEECCCCcEEE-EEcCEEEEEeCCcCCc
Confidence                            01122235899999999999987655543 5443  1244345 9999999999987644

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]

Probab=97.30  E-value=0.00023  Score=72.88  Aligned_cols=36  Identities=31%  Similarity=0.362  Sum_probs=33.6

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCC
Q psy9141           4 NSKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEARE   39 (379)
Q Consensus         4 m~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~   39 (379)
                      ..++|+||||+|.+|+.+|..|++.|.+|+|+|+..
T Consensus         5 ~~~~D~vIVGsG~aG~~lA~rLs~~g~~VllLEaG~   40 (542)
T COG2303           5 KMEYDYVIVGSGSAGSVLAARLSDAGLSVLVLEAGG   40 (542)
T ss_pred             cCCCCEEEECCCchhHHHHHHhcCCCCeEEEEeCCC
Confidence            347999999999999999999999999999999995

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=97.30  E-value=0.0003  Score=72.55  Aligned_cols=37  Identities=27%  Similarity=0.457  Sum_probs=33.7

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCC
Q psy9141           6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIR   42 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~   42 (379)
                      ..+|+||||||+||++|..|++.|++|+|+|+.+...
T Consensus       137 g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~G  173 (564)
T PRK12771        137 GKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLG  173 (564)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCC
Confidence            3589999999999999999999999999999987653

>PRK12770 putative glutamate synthase subunit beta; Provisional

Probab=97.30  E-value=0.00033  Score=67.78  Aligned_cols=36  Identities=33%  Similarity=0.481  Sum_probs=33.3

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCC
Q psy9141           6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDI   41 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~   41 (379)
                      ..+|+|||||++|+.+|..|++.|++|+++|+.+.+
T Consensus        18 ~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~   53 (352)
T PRK12770         18 GKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPEP   53 (352)
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCC
Confidence            469999999999999999999999999999998755

>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit

Probab=97.28  E-value=0.0014  Score=66.96  Aligned_cols=53  Identities=25%  Similarity=0.331  Sum_probs=39.8

Q ss_pred             HHhcCCCCeEEeCceEEEEEecCCeEE-EEEc--cCCceeEEEeecEEEecCCCChH
Q psy9141         105 ELEQYPDCNIYFQHKLINLDVNSGNVT-FYRT--EDNSETKITDNQLIIGADGAYSG  158 (379)
Q Consensus       105 ~~~~~~gv~i~~~~~v~~i~~~~~~v~-v~~~--~~G~~~~~i~adlVV~AdG~~S~  158 (379)
                      ..+...|++++.+++|++++.+++++. +++.  .+|+..+ ++|+.||.|.|.+|.
T Consensus       136 ~~A~~~Ga~i~~~t~V~~i~~~~~~v~gv~v~~~~~g~~~~-i~a~~VVnAaG~wa~  191 (516)
T TIGR03377       136 LDAQEHGARIFTYTKVTGLIREGGRVTGVKVEDHKTGEEER-IEAQVVINAAGIWAG  191 (516)
T ss_pred             HHHHHcCCEEEcCcEEEEEEEECCEEEEEEEEEcCCCcEEE-EEcCEEEECCCcchH
Confidence            334456999999999999998777643 3332  1454445 999999999999985

Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.

>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]

Probab=97.26  E-value=0.00027  Score=70.42  Aligned_cols=36  Identities=22%  Similarity=0.308  Sum_probs=34.0

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCC
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIR   42 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~   42 (379)
                      ..|+||||||+||++|..|++.|++|+++|+.+.+.
T Consensus       124 ~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~G  159 (457)
T COG0493         124 KKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDG  159 (457)
T ss_pred             CEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCCc
Confidence            689999999999999999999999999999998764

>KOG2960|consensus

Probab=97.26  E-value=0.00067  Score=59.48  Aligned_cols=36  Identities=36%  Similarity=0.463  Sum_probs=31.8

Q ss_pred             CcEEEECCChHHHHHHHHHHhC--CCcEEEEccCCCCC
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKN--QYEVNLYEAREDIR   42 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~--G~~V~viE~~~~~~   42 (379)
                      .||+|||||-+||++|+..++.  .++|.|||..-.+.
T Consensus        77 sDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVaPG  114 (328)
T KOG2960|consen   77 SDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAPG  114 (328)
T ss_pred             cceEEECCCccccceeeeeeccCCCceEEEEEeeecCC
Confidence            5999999999999999999854  78999999887664

>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit

Probab=97.25  E-value=0.00036  Score=70.61  Aligned_cols=35  Identities=26%  Similarity=0.416  Sum_probs=32.9

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCC
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDI   41 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~   41 (379)
                      .+|+||||||+|+++|..|++.|++|+|+|+.+.+
T Consensus       144 ~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~~  178 (485)
T TIGR01317       144 KKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRC  178 (485)
T ss_pred             CEEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCC
Confidence            69999999999999999999999999999998754

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.

>PRK12770 putative glutamate synthase subunit beta; Provisional

Probab=97.19  E-value=0.0047  Score=59.79  Aligned_cols=33  Identities=36%  Similarity=0.284  Sum_probs=30.1

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCc-EEEEccCC
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKNQYE-VNLYEARE   39 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~G~~-V~viE~~~   39 (379)
                      ..|+|||+|+.|+-+|..|++.|.+ |+|+++.+
T Consensus       173 ~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~  206 (352)
T PRK12770        173 KKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRT  206 (352)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCeEEEEeecc
Confidence            4799999999999999999999997 99999764

>PLN03000 amine oxidase

Probab=97.18  E-value=0.00048  Score=73.10  Aligned_cols=37  Identities=38%  Similarity=0.523  Sum_probs=34.2

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCC
Q psy9141           6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIR   42 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~   42 (379)
                      ..+|+|||||++|+.+|..|++.|++|+|+|+++.+.
T Consensus       184 ~~~VvIIGaG~aGL~aA~~L~~~G~~V~VlE~~~riG  220 (881)
T PLN03000        184 KSSVVIVGAGLSGLAAARQLMRFGFKVTVLEGRKRPG  220 (881)
T ss_pred             CCCEEEECccHHHHHHHHHHHHCCCcEEEEEccCcCC
Confidence            5799999999999999999999999999999987654

>TIGR01810 betA choline dehydrogenase

Probab=97.14  E-value=0.00037  Score=71.39  Aligned_cols=33  Identities=30%  Similarity=0.459  Sum_probs=31.0

Q ss_pred             cEEEECCChHHHHHHHHHHhCC-CcEEEEccCCC
Q psy9141           8 SVVIVGGGLVGSLSACMFAKNQ-YEVNLYEARED   40 (379)
Q Consensus         8 dVvIVGaGpaGl~~A~~La~~G-~~V~viE~~~~   40 (379)
                      |+||||||.+|+.+|..|++.| ++|+|||+.+.
T Consensus         1 D~iIVG~G~aG~vvA~rLs~~~~~~VlvlEaG~~   34 (532)
T TIGR01810         1 DYIIIGGGSAGSVLAGRLSEDVSNSVLVLEAGGS   34 (532)
T ss_pred             CEEEECCCchHHHHHHHhccCCCCeEEEEecCCC
Confidence            8999999999999999999998 79999999863

This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.

>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis []

Probab=97.13  E-value=0.017  Score=57.44  Aligned_cols=36  Identities=19%  Similarity=0.338  Sum_probs=31.6

Q ss_pred             CcEEEECCChHHHHHHHHHHhC----CCcEEEEccCCCCC
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKN----QYEVNLYEAREDIR   42 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~----G~~V~viE~~~~~~   42 (379)
                      .++=|||+|+|+|++|..|-|-    |-+|+|+|+.+.+.
T Consensus         3 ~~AyivGsGiAsLAAAvfLIrDa~~pg~nIhIlE~~~~~G   42 (500)
T PF06100_consen    3 KKAYIVGSGIASLAAAVFLIRDAKMPGENIHILEELDVPG   42 (500)
T ss_pred             ceEEEECCCHHHHHhhhhhhccCCCCccceEEEeCCCCCC
Confidence            4788999999999999999986    55999999988654

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=97.13  E-value=0.0059  Score=62.34  Aligned_cols=97  Identities=19%  Similarity=0.230  Sum_probs=70.3

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeEEE
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARMIH   86 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~   86 (379)
                      .+|+|||||..|+-+|..|+..+.+|+|+++.+....     .                     ..+.            
T Consensus       352 k~VvVVGgG~~g~e~A~~L~~~~~~Vtlv~~~~~l~~-----~---------------------~~l~------------  393 (517)
T PRK15317        352 KRVAVIGGGNSGVEAAIDLAGIVKHVTVLEFAPELKA-----D---------------------QVLQ------------  393 (517)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCEEEEEEECccccc-----c---------------------HHHH------------
Confidence            4899999999999999999999999999987753210     0                     0000            


Q ss_pred             ecCCcEEEeeCCCCCcHHHHhcCCCCeEEeCceEEEEEecCCeEE-EEEc--cCCceeEEEeecEEEecCCCChHH
Q psy9141          87 GQNGKLREIPYDPVHNQVELEQYPDCNIYFQHKLINLDVNSGNVT-FYRT--EDNSETKITDNQLIIGADGAYSGV  159 (379)
Q Consensus        87 ~~~g~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~v~-v~~~--~~G~~~~~i~adlVV~AdG~~S~v  159 (379)
                                       ..+.+..|+++++++.+++++.+++.++ +.+.  .+|++.+ +.+|.|+.|.|....+
T Consensus       394 -----------------~~l~~~~gI~i~~~~~v~~i~~~~g~v~~v~~~~~~~g~~~~-i~~D~v~~~~G~~p~~  451 (517)
T PRK15317        394 -----------------DKLRSLPNVTIITNAQTTEVTGDGDKVTGLTYKDRTTGEEHH-LELEGVFVQIGLVPNT  451 (517)
T ss_pred             -----------------HHHhcCCCcEEEECcEEEEEEcCCCcEEEEEEEECCCCcEEE-EEcCEEEEeECCccCc
Confidence                             1122236899999999999987755543 3332  1455556 9999999999998644

>PLN02785 Protein HOTHEAD

Probab=97.09  E-value=0.00058  Score=70.52  Aligned_cols=34  Identities=26%  Similarity=0.423  Sum_probs=31.9

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCC
Q psy9141           6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEARED   40 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~   40 (379)
                      .||+||||||.+|+.+|..|++ +.+|+|||+.+.
T Consensus        55 ~yD~IIVG~G~aG~~lA~~Ls~-~~~VLllE~G~~   88 (587)
T PLN02785         55 AYDYIVVGGGTAGCPLAATLSQ-NFSVLLLERGGV   88 (587)
T ss_pred             cCCEEEECcCHHHHHHHHHHhc-CCcEEEEecCCC
Confidence            6999999999999999999999 699999999974

>PRK13984 putative oxidoreductase; Provisional

Probab=97.09  E-value=0.00066  Score=70.65  Aligned_cols=37  Identities=38%  Similarity=0.534  Sum_probs=33.9

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCC
Q psy9141           6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIR   42 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~   42 (379)
                      ..+|+|||+||+|+++|..|++.|++|+|+|+.+...
T Consensus       283 ~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~g  319 (604)
T PRK13984        283 NKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKPG  319 (604)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCC
Confidence            4689999999999999999999999999999987553

>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B

Probab=97.07  E-value=0.0022  Score=61.74  Aligned_cols=143  Identities=16%  Similarity=0.142  Sum_probs=76.6

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCC--cEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHH--HHhCCCCce
Q psy9141           6 KKSVVIVGGGLVGSLSACMFAKNQY--EVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDK--LLAHGIPMR   81 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La~~G~--~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~--l~~~~~~~~   81 (379)
                      ...|+|||||.++.-++..|.+.+-  +|+++=|++.....  .++.-.+-...|...+.+..+-...+  +........
T Consensus       190 ~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~~~~~~--d~s~f~ne~f~P~~v~~f~~l~~~~R~~~l~~~~~~n  267 (341)
T PF13434_consen  190 GKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSPGFFPM--DDSPFVNEIFSPEYVDYFYSLPDEERRELLREQRHTN  267 (341)
T ss_dssp             -EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSSS-EB------CCHHGGGSHHHHHHHHTS-HHHHHHHHHHTGGGT
T ss_pred             CCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCCccCCC--ccccchhhhcCchhhhhhhcCCHHHHHHHHHHhHhhc
Confidence            4689999999999999999998875  89999998755421  11111011367888888877743211  111110000


Q ss_pred             eeEEEecCCcEEEeeCCCCCcHHHHhcCCCCeEEeCceEEEEEecC-CeEEEEEcc--CCceeEEEeecEEEecCCC
Q psy9141          82 ARMIHGQNGKLREIPYDPVHNQVELEQYPDCNIYFQHKLINLDVNS-GNVTFYRTE--DNSETKITDNQLIIGADGA  155 (379)
Q Consensus        82 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~-~~v~v~~~~--~G~~~~~i~adlVV~AdG~  155 (379)
                      .-.+ +.  .....-|...+. ..+.....++++.+++|++++.++ +++.+++.+  .|+..+ +++|.||.|+|-
T Consensus       268 y~~i-~~--~~l~~iy~~lY~-~~v~g~~~~~l~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~~-~~~D~VilATGy  339 (341)
T PF13434_consen  268 YGGI-DP--DLLEAIYDRLYE-QRVSGRGRLRLLPNTEVTSAEQDGDGGVRLTLRHRQTGEEET-LEVDAVILATGY  339 (341)
T ss_dssp             SSEB--H--HHHHHHHHHHHH-HHHHT---SEEETTEEEEEEEEES-SSEEEEEEETTT--EEE-EEESEEEE---E
T ss_pred             CCCC-CH--HHHHHHHHHHHH-HHhcCCCCeEEeCCCEEEEEEECCCCEEEEEEEECCCCCeEE-EecCEEEEcCCc
Confidence            0000 00  000000000000 234444569999999999999988 488887761  355556 999999999994

>PLN02976 amine oxidase

Probab=97.03  E-value=0.00076  Score=74.41  Aligned_cols=37  Identities=30%  Similarity=0.561  Sum_probs=33.7

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCC
Q psy9141           6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIR   42 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~   42 (379)
                      ..+|+|||||++|+++|+.|++.|++|+|+|+.+.+.
T Consensus       693 ~~dV~IIGAG~AGLaAA~~L~~~G~~V~VlEa~~~vG  729 (1713)
T PLN02976        693 RKKIIVVGAGPAGLTAARHLQRQGFSVTVLEARSRIG  729 (1713)
T ss_pred             CCcEEEECchHHHHHHHHHHHHCCCcEEEEeeccCCC
Confidence            4799999999999999999999999999999986553

>PRK10262 thioredoxin reductase; Provisional

Probab=97.02  E-value=0.0096  Score=56.76  Aligned_cols=101  Identities=16%  Similarity=0.148  Sum_probs=67.7

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeEEE
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARMIH   86 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~   86 (379)
                      .+|+|||+|..|+-+|..|++.|.+|+++++.+....             .+...         +.+             
T Consensus       147 ~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~~~~~-------------~~~~~---------~~~-------------  191 (321)
T PRK10262        147 QKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFRA-------------EKILI---------KRL-------------  191 (321)
T ss_pred             CEEEEECCCHHHHHHHHHHHhhCCEEEEEEECCccCC-------------CHHHH---------HHH-------------
Confidence            4899999999999999999999999999998753210             00000         000             


Q ss_pred             ecCCcEEEeeCCCCCcHHHHhcCCCCeEEeCceEEEEEecCCeE-EEEEcc---CCceeEEEeecEEEecCCCChHHH
Q psy9141          87 GQNGKLREIPYDPVHNQVELEQYPDCNIYFQHKLINLDVNSGNV-TFYRTE---DNSETKITDNQLIIGADGAYSGVR  160 (379)
Q Consensus        87 ~~~g~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~v-~v~~~~---~G~~~~~i~adlVV~AdG~~S~vr  160 (379)
                                       ....+..+++++.++.+++++.+++++ .+++..   +++..+ +.+|.||.|.|......
T Consensus       192 -----------------~~~l~~~gV~i~~~~~v~~v~~~~~~~~~v~~~~~~~~~~~~~-i~~D~vv~a~G~~p~~~  251 (321)
T PRK10262        192 -----------------MDKVENGNIILHTNRTLEEVTGDQMGVTGVRLRDTQNSDNIES-LDVAGLFVAIGHSPNTA  251 (321)
T ss_pred             -----------------HhhccCCCeEEEeCCEEEEEEcCCccEEEEEEEEcCCCCeEEE-EECCEEEEEeCCccChh
Confidence                             001112578899999999997665433 233330   123334 99999999999876543

>KOG1276|consensus

Probab=97.02  E-value=0.0007  Score=65.29  Aligned_cols=70  Identities=24%  Similarity=0.383  Sum_probs=45.8

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCcE--EEEccCCCCCCC--C-CCC--------Cccccc--ccCHHHHHHHHHCCCh
Q psy9141           6 KKSVVIVGGGLVGSLSACMFAKNQYEV--NLYEAREDIRNS--G-LSE--------GKSINL--ALSVRGREALRRIGLE   70 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La~~G~~V--~viE~~~~~~~~--~-~~~--------g~~i~~--al~~~~~~~l~~lGl~   70 (379)
                      ..+|+|||||++||++|++|++.+-++  +|+|+++.....  + ..+        .|++.-  ......+.++..+|+.
T Consensus        11 ~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvGGwirS~r~~ng~ifE~GPrtlrpag~~g~~~l~lv~dLGl~   90 (491)
T KOG1276|consen   11 GMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVGGWIRSDRMQNGFIFEEGPRTLRPAGPGGAETLDLVSDLGLE   90 (491)
T ss_pred             cceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCcccceeeeccCCCceeeccCCCccCcCCcchhHHHHHHHHcCcc
Confidence            468999999999999999999998765  569998754311  0 000        111100  0122567788889987


Q ss_pred             HHHHh
Q psy9141          71 DKLLA   75 (379)
Q Consensus        71 ~~l~~   75 (379)
                      +++..
T Consensus        91 ~e~~~   95 (491)
T KOG1276|consen   91 DELQP   95 (491)
T ss_pred             ceeee
Confidence            65543

>TIGR02352 thiamin_ThiO glycine oxidase ThiO

Probab=97.00  E-value=0.0026  Score=60.72  Aligned_cols=49  Identities=14%  Similarity=0.283  Sum_probs=39.5

Q ss_pred             HHhcCCCCeEEeCceEEEEEecCCeEE-EEEccCCceeEEEeecEEEecCCCChH
Q psy9141         105 ELEQYPDCNIYFQHKLINLDVNSGNVT-FYRTEDNSETKITDNQLIIGADGAYSG  158 (379)
Q Consensus       105 ~~~~~~gv~i~~~~~v~~i~~~~~~v~-v~~~~~G~~~~~i~adlVV~AdG~~S~  158 (379)
                      +.....|++++.+++|++++.+++++. +.+. +| +   +.||.||.|+|.+|.
T Consensus       145 ~~~~~~g~~~~~~~~v~~i~~~~~~~~~v~~~-~g-~---~~a~~vV~a~G~~~~  194 (337)
T TIGR02352       145 KALEKLGVEIIEHTEVQHIEIRGEKVTAIVTP-SG-D---VQADQVVLAAGAWAG  194 (337)
T ss_pred             HHHHHcCCEEEccceEEEEEeeCCEEEEEEcC-CC-E---EECCEEEEcCChhhh
Confidence            334456999999999999998887765 5555 56 4   899999999999985

This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.

>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

Probab=96.92  E-value=0.0051  Score=60.14  Aligned_cols=50  Identities=18%  Similarity=0.206  Sum_probs=35.7

Q ss_pred             hcCCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEEEecCCCC-hHHHHHh
Q psy9141         107 EQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAY-SGVRKCL  163 (379)
Q Consensus       107 ~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlVV~AdG~~-S~vr~~l  163 (379)
                      .+..||+|+.++.|++++.+  ++++.   +|++ + |.++.+|=|.|.. |.+-+.+
T Consensus       219 L~~~GV~v~l~~~Vt~v~~~--~v~~~---~g~~-~-I~~~tvvWaaGv~a~~~~~~l  269 (405)
T COG1252         219 LEKLGVEVLLGTPVTEVTPD--GVTLK---DGEE-E-IPADTVVWAAGVRASPLLKDL  269 (405)
T ss_pred             HHHCCCEEEcCCceEEECCC--cEEEc---cCCe-e-EecCEEEEcCCCcCChhhhhc
Confidence            33469999999999999754  44444   5552 3 9999999999965 4444443

>KOG1800|consensus

Probab=96.86  E-value=0.0014  Score=62.37  Aligned_cols=38  Identities=29%  Similarity=0.319  Sum_probs=33.3

Q ss_pred             CCCcEEEECCChHHHHHHHHHHhC--CCcEEEEccCCCCC
Q psy9141           5 SKKSVVIVGGGLVGSLSACMFAKN--QYEVNLYEAREDIR   42 (379)
Q Consensus         5 ~~~dVvIVGaGpaGl~~A~~La~~--G~~V~viE~~~~~~   42 (379)
                      +...|+|||+||||..+|..|.++  +.+|.|+|+.+.+.
T Consensus        19 ~~p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPF   58 (468)
T KOG1800|consen   19 STPRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPF   58 (468)
T ss_pred             CCceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCccc
Confidence            346899999999999999988874  68999999999774

>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional

Probab=96.77  E-value=0.011  Score=59.26  Aligned_cols=34  Identities=26%  Similarity=0.273  Sum_probs=30.8

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCC-cEEEEccCC
Q psy9141           6 KKSVVIVGGGLVGSLSACMFAKNQY-EVNLYEARE   39 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La~~G~-~V~viE~~~   39 (379)
                      .-+|+|||||.+|+-+|..|++.|. +|+++++.+
T Consensus       273 g~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~  307 (457)
T PRK11749        273 GKRVVVIGGGNTAMDAARTAKRLGAESVTIVYRRG  307 (457)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecC
Confidence            3589999999999999999999998 899999864

>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=96.75  E-value=0.0027  Score=61.10  Aligned_cols=142  Identities=12%  Similarity=0.130  Sum_probs=79.9

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHhCC-CcEEEEccCCCCCCCCCCCCcccccccCHHHHH--HHHHCCChHHHHhCCCCc
Q psy9141           4 NSKKSVVIVGGGLVGSLSACMFAKNQ-YEVNLYEAREDIRNSGLSEGKSINLALSVRGRE--ALRRIGLEDKLLAHGIPM   80 (379)
Q Consensus         4 m~~~dVvIVGaGpaGl~~A~~La~~G-~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~--~l~~lGl~~~l~~~~~~~   80 (379)
                      +..+|++.||-||.-|++|+.|..++ +++..+||.+...-.    +..   .+...+++  .++.|      ..-..|.
T Consensus         3 ~~~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp~F~WH----pGm---llegstlQv~FlkDL------VTl~~PT   69 (436)
T COG3486           3 AEVLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKPDFSWH----PGM---LLEGSTLQVPFLKDL------VTLVDPT   69 (436)
T ss_pred             CcceeeEEEccCchHHHHHHHhccccCcceEEEecCCCCCcC----CCc---ccCCccccccchhhh------ccccCCC
Confidence            67899999999999999999999885 789999999977533    111   11111111  12222      1111122


Q ss_pred             eeeEE---EecCCcEEEee-CCCC------CcH--HHHhcCCCCeEEeCceEEEEEecC-C-eEE--EEEccCCceeEEE
Q psy9141          81 RARMI---HGQNGKLREIP-YDPV------HNQ--VELEQYPDCNIYFQHKLINLDVNS-G-NVT--FYRTEDNSETKIT  144 (379)
Q Consensus        81 ~~~~~---~~~~g~~~~~~-~~~~------~~~--~~~~~~~gv~i~~~~~v~~i~~~~-~-~v~--v~~~~~G~~~~~i  144 (379)
                      ....+   ....++...+- ++..      +++  .-++.. --.++++++|++|..-+ + ...  +... +++.   +
T Consensus        70 s~ySFLNYL~~h~RLy~Fl~~e~f~i~R~Ey~dY~~Waa~~-l~~~rfg~~V~~i~~~~~d~~~~~~~~t~-~~~~---y  144 (436)
T COG3486          70 SPYSFLNYLHEHGRLYEFLNYETFHIPRREYNDYCQWAASQ-LPSLRFGEEVTDISSLDGDAVVRLFVVTA-NGTV---Y  144 (436)
T ss_pred             CchHHHHHHHHcchHhhhhhhhcccccHHHHHHHHHHHHhh-CCccccCCeeccccccCCcceeEEEEEcC-CCcE---E
Confidence            11111   11222221110 0100      011  222332 25688999999773322 2 222  4444 6666   9


Q ss_pred             eecEEEecCCCChHHHHHh
Q psy9141         145 DNQLIIGADGAYSGVRKCL  163 (379)
Q Consensus       145 ~adlVV~AdG~~S~vr~~l  163 (379)
                      +|+-||...|..-.+...+
T Consensus       145 ~ar~lVlg~G~~P~IP~~f  163 (436)
T COG3486         145 RARNLVLGVGTQPYIPPCF  163 (436)
T ss_pred             EeeeEEEccCCCcCCChHH
Confidence            9999999999988776655

>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]

Probab=96.58  E-value=0.0021  Score=60.04  Aligned_cols=36  Identities=36%  Similarity=0.506  Sum_probs=32.9

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCC
Q psy9141           6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDI   41 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~   41 (379)
                      ...|.|||||.||.-+|+.++++|++|.++|-++..
T Consensus         3 ~~~i~VIGaGLAGSEAAwqiA~~Gv~V~L~EMRp~k   38 (439)
T COG1206           3 QQPINVIGAGLAGSEAAWQIAKRGVPVILYEMRPVK   38 (439)
T ss_pred             CCceEEEcccccccHHHHHHHHcCCcEEEEEccccc
Confidence            457999999999999999999999999999988643

>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein

Probab=96.54  E-value=0.03  Score=54.34  Aligned_cols=41  Identities=12%  Similarity=0.018  Sum_probs=32.0

Q ss_pred             CCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEEEecCCCChH
Q psy9141         110 PDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAYSG  158 (379)
Q Consensus       110 ~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlVV~AdG~~S~  158 (379)
                      .+++++.++++++++.+    .+.+. +|++   +.+|.||.|.|....
T Consensus       204 ~gV~v~~~~~v~~i~~~----~v~~~-~g~~---i~~D~vi~a~G~~p~  244 (364)
T TIGR03169       204 RGIEVHEGAPVTRGPDG----ALILA-DGRT---LPADAILWATGARAP  244 (364)
T ss_pred             CCCEEEeCCeeEEEcCC----eEEeC-CCCE---EecCEEEEccCCChh
Confidence            57888888888887532    35556 7877   999999999997753

Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.

>KOG0399|consensus

Probab=96.51  E-value=0.0025  Score=67.95  Aligned_cols=36  Identities=31%  Similarity=0.461  Sum_probs=33.7

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCC
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIR   42 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~   42 (379)
                      ..|+|||.||+||++|-.|.+.|+.|+|+||.....
T Consensus      1786 ~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~g 1821 (2142)
T KOG0399|consen 1786 KRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVG 1821 (2142)
T ss_pred             cEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcC
Confidence            589999999999999999999999999999998664

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=96.51  E-value=0.044  Score=54.94  Aligned_cols=33  Identities=36%  Similarity=0.340  Sum_probs=31.1

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEccCC
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEARE   39 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~   39 (379)
                      .+|+|||||.+|+-+|..|++.|.+|+++++.+
T Consensus       273 k~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~  305 (449)
T TIGR01316       273 KSVVVIGGGNTAVDSARTALRLGAEVHCLYRRT  305 (449)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCEEEEEeecC
Confidence            479999999999999999999999999999875

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>KOG0405|consensus

Probab=96.51  E-value=0.023  Score=53.69  Aligned_cols=135  Identities=15%  Similarity=0.083  Sum_probs=75.3

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccc--cccCHHHHHHHHHCCChHHHHhCCCCce
Q psy9141           4 NSKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSIN--LALSVRGREALRRIGLEDKLLAHGIPMR   81 (379)
Q Consensus         4 m~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~--~al~~~~~~~l~~lGl~~~l~~~~~~~~   81 (379)
                      .++||.+|||||-.|++.|+..+..|.+|.|+|..-.....  +-.++..  -.++..+ .+-..   .+.-...+++.+
T Consensus        18 ~k~fDylvIGgGSGGvasARrAa~~GAkv~l~E~~f~lGGT--CVn~GCVPKKvm~~~a-~~~~~---~~da~~yG~~~~   91 (478)
T KOG0405|consen   18 VKDFDYLVIGGGSGGVASARRAASHGAKVALCELPFGLGGT--CVNVGCVPKKVMWYAA-DYSEE---MEDAKDYGFPIN   91 (478)
T ss_pred             ccccceEEEcCCcchhHHhHHHHhcCceEEEEecCCCcCce--EEeeccccceeEEehh-hhhHH---hhhhhhcCCccc
Confidence            45799999999999999999999999999999976322211  1111100  0000000 00000   011111233322


Q ss_pred             eeEEEecCCcEEEeeCCCCC---------cH-----HHHhcCCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeec
Q psy9141          82 ARMIHGQNGKLREIPYDPVH---------NQ-----VELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQ  147 (379)
Q Consensus        82 ~~~~~~~~g~~~~~~~~~~~---------~~-----~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~ad  147 (379)
                      ..           ..|.|..         .+     +......++++..+..-   -.+++.++|+.. ||++.. ++|+
T Consensus        92 ~~-----------~~fdW~~ik~krdayi~RLngIY~~~L~k~~V~~i~G~a~---f~~~~~v~V~~~-d~~~~~-Ytak  155 (478)
T KOG0405|consen   92 EE-----------GSFDWKVIKQKRDAYILRLNGIYKRNLAKAAVKLIEGRAR---FVSPGEVEVEVN-DGTKIV-YTAK  155 (478)
T ss_pred             cc-----------cCCcHHHHHhhhhHHHHHHHHHHHhhccccceeEEeeeEE---EcCCCceEEEec-CCeeEE-Eecc
Confidence            11           1122211         00     33344456777766421   124566788877 887655 8999


Q ss_pred             EEEecCCCChHHH
Q psy9141         148 LIIGADGAYSGVR  160 (379)
Q Consensus       148 lVV~AdG~~S~vr  160 (379)
                      .+..|.|.+....
T Consensus       156 ~iLIAtGg~p~~P  168 (478)
T KOG0405|consen  156 HILIATGGRPIIP  168 (478)
T ss_pred             eEEEEeCCccCCC
Confidence            9999999987655

>KOG0404|consensus

Probab=96.51  E-value=0.0062  Score=54.03  Aligned_cols=111  Identities=17%  Similarity=0.226  Sum_probs=65.7

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeEEE
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARMIH   86 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~   86 (379)
                      ..|+|||.||++-.+|+++++.-++-+++|-.-.....   .|...    +-                       ...+-
T Consensus         9 e~v~IiGSGPAa~tAAiYaaraelkPllfEG~~~~~i~---pGGQL----tT-----------------------TT~ve   58 (322)
T KOG0404|consen    9 ENVVIIGSGPAAHTAAIYAARAELKPLLFEGMMANGIA---PGGQL----TT-----------------------TTDVE   58 (322)
T ss_pred             eeEEEEccCchHHHHHHHHhhcccCceEEeeeeccCcC---CCcee----ee-----------------------eeccc
Confidence            48999999999999999999999999999955422211   01110    00                       00111


Q ss_pred             ecCCcEEEeeCCCCCcH-----HHHhcCCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEEEecCCCCh
Q psy9141          87 GQNGKLREIPYDPVHNQ-----VELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAYS  157 (379)
Q Consensus        87 ~~~g~~~~~~~~~~~~~-----~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlVV~AdG~~S  157 (379)
                      +..|    +|-+..-..     ...+..-|.+|... .|.+++....-..+.++  .+.   +.||-||.|+|+..
T Consensus        59 NfPG----FPdgi~G~~l~d~mrkqs~r~Gt~i~tE-tVskv~~sskpF~l~td--~~~---v~~~avI~atGAsA  124 (322)
T KOG0404|consen   59 NFPG----FPDGITGPELMDKMRKQSERFGTEIITE-TVSKVDLSSKPFKLWTD--ARP---VTADAVILATGASA  124 (322)
T ss_pred             cCCC----CCcccccHHHHHHHHHHHHhhcceeeee-ehhhccccCCCeEEEec--CCc---eeeeeEEEecccce
Confidence            1111    111111001     22233346666654 56777777766666554  334   88999999999854

>KOG1336|consensus

Probab=96.38  E-value=0.025  Score=55.63  Aligned_cols=101  Identities=16%  Similarity=0.187  Sum_probs=73.7

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeEEE
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARMIH   86 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~   86 (379)
                      -.|++||+|..|+-+|..|.-.+.+|+++++.+.+-.      +.    +.             +.+.+.          
T Consensus       214 ~~vV~vG~G~ig~Evaa~l~~~~~~VT~V~~e~~~~~------~l----f~-------------~~i~~~----------  260 (478)
T KOG1336|consen  214 GKVVCVGGGFIGMEVAAALVSKAKSVTVVFPEPWLLP------RL----FG-------------PSIGQF----------  260 (478)
T ss_pred             ceEEEECchHHHHHHHHHHHhcCceEEEEccCccchh------hh----hh-------------HHHHHH----------
Confidence            4699999999999999999999999999998764421      00    00             011000          


Q ss_pred             ecCCcEEEeeCCCCCcHHHHhcCCCCeEEeCceEEEEEecCC--eEEEEEccCCceeEEEeecEEEecCCCChHHH
Q psy9141          87 GQNGKLREIPYDPVHNQVELEQYPDCNIYFQHKLINLDVNSG--NVTFYRTEDNSETKITDNQLIIGADGAYSGVR  160 (379)
Q Consensus        87 ~~~g~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~--~v~v~~~~~G~~~~~i~adlVV~AdG~~S~vr  160 (379)
                                      -+...+..+++++.++.+.+++.+.+  ...+.+. ||++   +.||+||...|+.+.+-
T Consensus       261 ----------------~~~y~e~kgVk~~~~t~~s~l~~~~~Gev~~V~l~-dg~~---l~adlvv~GiG~~p~t~  316 (478)
T KOG1336|consen  261 ----------------YEDYYENKGVKFYLGTVVSSLEGNSDGEVSEVKLK-DGKT---LEADLVVVGIGIKPNTS  316 (478)
T ss_pred             ----------------HHHHHHhcCeEEEEecceeecccCCCCcEEEEEec-cCCE---eccCeEEEeeccccccc
Confidence                            02233346899999999999987763  3447788 9998   99999999999987543

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=96.38  E-value=0.039  Score=56.87  Aligned_cols=33  Identities=18%  Similarity=0.396  Sum_probs=30.9

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEccCC
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEARE   39 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~   39 (379)
                      .+|+|||||++|+-+|..|++.|.+|+++++.+
T Consensus       144 ~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~  176 (555)
T TIGR03143       144 MDVFVIGGGFAAAEEAVFLTRYASKVTVIVREP  176 (555)
T ss_pred             CEEEEECCCHHHHHHHHHHHccCCEEEEEEeCC
Confidence            579999999999999999999999999999875

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>PRK12831 putative oxidoreductase; Provisional

Probab=96.31  E-value=0.035  Score=55.85  Aligned_cols=33  Identities=33%  Similarity=0.343  Sum_probs=31.0

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEccCC
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEARE   39 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~   39 (379)
                      .+|+|||||.+|+-+|..|.+.|.+|+++++..
T Consensus       282 k~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~  314 (464)
T PRK12831        282 KKVAVVGGGNVAMDAARTALRLGAEVHIVYRRS  314 (464)
T ss_pred             CeEEEECCcHHHHHHHHHHHHcCCEEEEEeecC
Confidence            489999999999999999999999999999865

>KOG1238|consensus

Probab=96.25  E-value=0.0044  Score=63.00  Aligned_cols=37  Identities=35%  Similarity=0.534  Sum_probs=33.9

Q ss_pred             CCCcEEEECCChHHHHHHHHHHhC-CCcEEEEccCCCC
Q psy9141           5 SKKSVVIVGGGLVGSLSACMFAKN-QYEVNLYEAREDI   41 (379)
Q Consensus         5 ~~~dVvIVGaGpaGl~~A~~La~~-G~~V~viE~~~~~   41 (379)
                      ..||.+|||||-|||.+|..|++. .++|+|+|+...+
T Consensus        56 ~~yDyIVVGgGtAGcvlAarLSEn~~~~VLLLEaGg~~   93 (623)
T KOG1238|consen   56 SSYDYIVVGGGTAGCVLAARLSENPNWSVLLLEAGGDP   93 (623)
T ss_pred             cCCCEEEECCCchhHHHHHhhccCCCceEEEEecCCCC
Confidence            469999999999999999999998 6899999999765

>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]

Probab=96.10  E-value=0.01  Score=61.15  Aligned_cols=99  Identities=19%  Similarity=0.215  Sum_probs=66.1

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeEEE
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARMIH   86 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~   86 (379)
                      -..+|||||.-|+-+|..|.+.|.+|+|++=.+..-..          .|...+-++|+..                   
T Consensus       146 ~~avVIGGGLLGlEaA~~L~~~Gm~~~Vvh~~~~lMer----------QLD~~ag~lL~~~-------------------  196 (793)
T COG1251         146 KKAVVIGGGLLGLEAARGLKDLGMEVTVVHIAPTLMER----------QLDRTAGRLLRRK-------------------  196 (793)
T ss_pred             CCcEEEccchhhhHHHHHHHhCCCceEEEeecchHHHH----------hhhhHHHHHHHHH-------------------
Confidence            35799999999999999999999999999755432111          1223333333221                   


Q ss_pred             ecCCcEEEeeCCCCCcHHHHhcCCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEEEecCCCChH
Q psy9141          87 GQNGKLREIPYDPVHNQVELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAYSG  158 (379)
Q Consensus        87 ~~~g~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlVV~AdG~~S~  158 (379)
                                          .+..|++++++...+.+...+....++++ ||+.   +.||+||-|+|.+-.
T Consensus       197 --------------------le~~Gi~~~l~~~t~ei~g~~~~~~vr~~-DG~~---i~ad~VV~a~GIrPn  244 (793)
T COG1251         197 --------------------LEDLGIKVLLEKNTEEIVGEDKVEGVRFA-DGTE---IPADLVVMAVGIRPN  244 (793)
T ss_pred             --------------------HHhhcceeecccchhhhhcCcceeeEeec-CCCc---ccceeEEEecccccc
Confidence                                11235555555555555443334457788 9998   999999999998764

>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate

Probab=96.08  E-value=0.0077  Score=51.23  Aligned_cols=32  Identities=31%  Similarity=0.533  Sum_probs=29.9

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEccCC
Q psy9141           8 SVVIVGGGLVGSLSACMFAKNQYEVNLYEARE   39 (379)
Q Consensus         8 dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~   39 (379)
                      .|.|+|||..|.++|..|+++|++|+++.+++
T Consensus         1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~   32 (157)
T PF01210_consen    1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDE   32 (157)
T ss_dssp             EEEEESSSHHHHHHHHHHHHCTEEEEEETSCH
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCEEEEEeccH
Confidence            48999999999999999999999999998764

This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....

>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=96.02  E-value=0.11  Score=53.83  Aligned_cols=49  Identities=12%  Similarity=0.093  Sum_probs=37.8

Q ss_pred             CCCCeEEeCceEEEEEec-CCeEE---E-EEccCCceeEEEeecEEEecCCCChHH
Q psy9141         109 YPDCNIYFQHKLINLDVN-SGNVT---F-YRTEDNSETKITDNQLIIGADGAYSGV  159 (379)
Q Consensus       109 ~~gv~i~~~~~v~~i~~~-~~~v~---v-~~~~~G~~~~~i~adlVV~AdG~~S~v  159 (379)
                      ..+++++.++.++++..+ ++.|.   + ... +|+... +.|+-||.|+|..+.+
T Consensus       138 ~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~-~g~~~~-i~AkaVVLATGG~~~~  191 (570)
T PRK05675        138 KNGTTFLNEWYAVDLVKNQDGAVVGVIAICIE-TGETVY-IKSKATVLATGGAGRI  191 (570)
T ss_pred             ccCCEEEECcEEEEEEEcCCCeEEEEEEEEcC-CCcEEE-EecCeEEECCCCcccc
Confidence            468999999999998875 44433   3 224 777666 8999999999999854

>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=95.97  E-value=0.0058  Score=53.52  Aligned_cols=33  Identities=24%  Similarity=0.324  Sum_probs=27.2

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEccCCC
Q psy9141           8 SVVIVGGGLVGSLSACMFAKNQYEVNLYEARED   40 (379)
Q Consensus         8 dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~   40 (379)
                      .|.|||.|.+||.+|..||+.|++|+.+|.++.
T Consensus         2 ~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~   34 (185)
T PF03721_consen    2 KIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEE   34 (185)
T ss_dssp             EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HH
T ss_pred             EEEEECCCcchHHHHHHHHhCCCEEEEEeCChH
Confidence            599999999999999999999999999998863

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=95.94  E-value=0.0089  Score=52.13  Aligned_cols=32  Identities=38%  Similarity=0.719  Sum_probs=28.2

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEccCC
Q psy9141           8 SVVIVGGGLVGSLSACMFAKNQYEVNLYEARE   39 (379)
Q Consensus         8 dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~   39 (379)
                      .|.|||||..|...|..++..|++|+++|.++
T Consensus         1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~   32 (180)
T PF02737_consen    1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSP   32 (180)
T ss_dssp             EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSH
T ss_pred             CEEEEcCCHHHHHHHHHHHhCCCcEEEEECCh
Confidence            48999999999999999999999999999875

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>PRK06249 2-dehydropantoate 2-reductase; Provisional

Probab=95.90  E-value=0.012  Score=56.01  Aligned_cols=36  Identities=19%  Similarity=0.492  Sum_probs=32.2

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCC
Q psy9141           4 NSKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEARE   39 (379)
Q Consensus         4 m~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~   39 (379)
                      |....|+|||+|-.|..+|..|++.|++|+++.|+.
T Consensus         3 ~~~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~   38 (313)
T PRK06249          3 SETPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSD   38 (313)
T ss_pred             CcCcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC
Confidence            445689999999999999999999999999998764

>KOG4716|consensus

Probab=95.81  E-value=0.009  Score=56.15  Aligned_cols=34  Identities=21%  Similarity=0.189  Sum_probs=31.7

Q ss_pred             CCCcEEEECCChHHHHHHHHHHhCCCcEEEEccC
Q psy9141           5 SKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAR   38 (379)
Q Consensus         5 ~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~   38 (379)
                      .+||.+|||||-+||++|-..++.|.+|.++|--
T Consensus        18 ydyDLIviGgGSgGLacaKeAa~~G~kV~~lDfV   51 (503)
T KOG4716|consen   18 YDYDLIVIGGGSGGLACAKEAADLGAKVACLDFV   51 (503)
T ss_pred             CCccEEEEcCCcchhhHHHHHHhcCCcEEEEeec
Confidence            4799999999999999999999999999999854

>TIGR03467 HpnE squalene-associated FAD-dependent desaturase

Probab=95.76  E-value=0.12  Score=50.79  Aligned_cols=45  Identities=7%  Similarity=0.107  Sum_probs=35.4

Q ss_pred             CCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEEEecCCCCh
Q psy9141         110 PDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAYS  157 (379)
Q Consensus       110 ~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlVV~AdG~~S  157 (379)
                      .+++|+++++|++|+.+++++++....+|++   +.||.||.|.-...
T Consensus       210 ~g~~i~~~~~V~~i~~~~~~~~~~~~~~g~~---~~~d~vi~a~p~~~  254 (419)
T TIGR03467       210 RGGEVRLGTRVRSIEANAGGIRALVLSGGET---LPADAVVLAVPPRH  254 (419)
T ss_pred             cCCEEEcCCeeeEEEEcCCcceEEEecCCcc---ccCCEEEEcCCHHH
Confidence            4789999999999999888766543226766   89999999876554

The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.71  E-value=0.015  Score=58.15  Aligned_cols=36  Identities=31%  Similarity=0.366  Sum_probs=33.0

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCC
Q psy9141           4 NSKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEARE   39 (379)
Q Consensus         4 m~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~   39 (379)
                      ++...|+|||+|.+|+.+|..|++.|++|+++|+..
T Consensus         3 ~~~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~   38 (450)
T PRK14106          3 LKGKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKE   38 (450)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            556789999999999999999999999999999864

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=95.69  E-value=0.013  Score=52.97  Aligned_cols=60  Identities=18%  Similarity=0.300  Sum_probs=44.4

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCC--C-CCCCcccccccCHHHHHHHHHCCC
Q psy9141           8 SVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNS--G-LSEGKSINLALSVRGREALRRIGL   69 (379)
Q Consensus         8 dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~--~-~~~g~~i~~al~~~~~~~l~~lGl   69 (379)
                      +++|||+|..|...|..|.+.|++|+++|+++.....  + ..+...+  .........|+++|+
T Consensus         2 ~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~~~~~v--~gd~t~~~~L~~agi   64 (225)
T COG0569           2 KIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLADELDTHVV--IGDATDEDVLEEAGI   64 (225)
T ss_pred             EEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhhcceEEE--EecCCCHHHHHhcCC
Confidence            6999999999999999999999999999999855321  1 1233333  234455667888776

>PRK12810 gltD glutamate synthase subunit beta; Reviewed

Probab=95.68  E-value=0.054  Score=54.65  Aligned_cols=33  Identities=24%  Similarity=0.285  Sum_probs=27.8

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCC-cEEEEccCC
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKNQY-EVNLYEARE   39 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~G~-~V~viE~~~   39 (379)
                      ..|+|||||.+|+-+|..+.+.|. +|++++..+
T Consensus       282 k~VvVIGgG~~g~e~A~~~~~~ga~~Vt~~~~~~  315 (471)
T PRK12810        282 KHVVVIGGGDTGMDCVGTAIRQGAKSVTQRDIMP  315 (471)
T ss_pred             CEEEEECCcHHHHHHHHHHHHcCCCeEEEccccC
Confidence            479999999999999998888886 788766544

>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

Probab=95.67  E-value=0.096  Score=56.07  Aligned_cols=33  Identities=33%  Similarity=0.321  Sum_probs=30.6

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCc-EEEEccCC
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKNQYE-VNLYEARE   39 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~G~~-V~viE~~~   39 (379)
                      .+|+|||||.+|+-+|..+.+.|.+ |+++++++
T Consensus       571 k~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~  604 (752)
T PRK12778        571 KKVAVVGGGNTAMDSARTAKRLGAERVTIVYRRS  604 (752)
T ss_pred             CcEEEECCcHHHHHHHHHHHHcCCCeEEEeeecC
Confidence            4799999999999999999999997 99999875

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.61  E-value=0.016  Score=58.51  Aligned_cols=34  Identities=21%  Similarity=0.230  Sum_probs=31.2

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCcEEEEccCC
Q psy9141           6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEARE   39 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~   39 (379)
                      ...|+|||+|++|+++|..|++.|.+|+++|+.+
T Consensus        16 ~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~   49 (480)
T PRK01438         16 GLRVVVAGLGVSGFAAADALLELGARVTVVDDGD   49 (480)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            3479999999999999999999999999999764

>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=95.61  E-value=0.016  Score=54.42  Aligned_cols=34  Identities=29%  Similarity=0.468  Sum_probs=31.7

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEccCCCC
Q psy9141           8 SVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDI   41 (379)
Q Consensus         8 dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~   41 (379)
                      .|.|||+|..|...|..|++.|++|+++|+++..
T Consensus         7 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~   40 (286)
T PRK07819          7 RVGVVGAGQMGAGIAEVCARAGVDVLVFETTEEL   40 (286)
T ss_pred             EEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHH
Confidence            7999999999999999999999999999988644

>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.53  E-value=0.016  Score=58.23  Aligned_cols=34  Identities=18%  Similarity=0.281  Sum_probs=31.3

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEccCCCC
Q psy9141           8 SVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDI   41 (379)
Q Consensus         8 dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~   41 (379)
                      .|+|||.|++|+++|..|++.|++|+++|+...+
T Consensus         2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~~   35 (459)
T PRK02705          2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDSP   35 (459)
T ss_pred             eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCch
Confidence            5899999999999999999999999999988644

>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function

Probab=95.50  E-value=0.015  Score=57.60  Aligned_cols=38  Identities=21%  Similarity=0.315  Sum_probs=30.3

Q ss_pred             CCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCC
Q psy9141           5 SKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIR   42 (379)
Q Consensus         5 ~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~   42 (379)
                      .+|||+|+|-|+.-+.+|.+|++.|.+|+.+|+++.-+
T Consensus         3 ~~yDviI~GTGl~esila~als~~GkkVLhiD~n~yYG   40 (438)
T PF00996_consen    3 EEYDVIILGTGLTESILAAALSRSGKKVLHIDRNDYYG   40 (438)
T ss_dssp             SBESEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSSC
T ss_pred             ccceEEEECCCcHHHHHHHHHHhcCCEEEecCCCCCcC
Confidence            47999999999999999999999999999999998554

This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....

>KOG3923|consensus

Probab=95.50  E-value=0.016  Score=53.59  Aligned_cols=38  Identities=16%  Similarity=0.262  Sum_probs=31.5

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCC-------CcEEEEccCCCCCC
Q psy9141           6 KKSVVIVGGGLVGSLSACMFAKNQ-------YEVNLYEAREDIRN   43 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La~~G-------~~V~viE~~~~~~~   43 (379)
                      ..+|+|||+|..||++|+.+.+.+       .+|+|++-+..+..
T Consensus         3 ~~~iaViGaGVIGlsTA~~i~~~~~~~~ip~~~vtv~~Drf~e~T   47 (342)
T KOG3923|consen    3 TPRIAVIGAGVIGLSTALCILELYHSVLIPVAKVTVISDRFTEDT   47 (342)
T ss_pred             CccEEEEcCCeechhHHHHHHHhhhhccCCcceEEEecCCCcccc
Confidence            458999999999999998888854       58999988776543

>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1

Probab=95.47  E-value=0.022  Score=47.80  Aligned_cols=31  Identities=32%  Similarity=0.544  Sum_probs=29.0

Q ss_pred             EEEECCChHHHHHHHHHHhCCCcEEEEccCC
Q psy9141           9 VVIVGGGLVGSLSACMFAKNQYEVNLYEARE   39 (379)
Q Consensus         9 VvIVGaGpaGl~~A~~La~~G~~V~viE~~~   39 (379)
                      |+|+|+|-.|+..|..|++.|.+|+++.|..
T Consensus         1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~   31 (151)
T PF02558_consen    1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP   31 (151)
T ss_dssp             EEEESTSHHHHHHHHHHHHTTCEEEEEESHH
T ss_pred             CEEECcCHHHHHHHHHHHHCCCceEEEEccc
Confidence            7899999999999999999999999998764

1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....

>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial

Probab=95.40  E-value=0.028  Score=56.30  Aligned_cols=35  Identities=31%  Similarity=0.346  Sum_probs=32.5

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCC
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDI   41 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~   41 (379)
                      .+|+|||||+.|+-+|..|++.|.+|+++|+.+.+
T Consensus       167 ~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~i  201 (450)
T TIGR01421       167 KRVVIVGAGYIAVELAGVLHGLGSETHLVIRHERV  201 (450)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCC
Confidence            48999999999999999999999999999988754

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.

>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=95.31  E-value=0.022  Score=56.81  Aligned_cols=99  Identities=13%  Similarity=0.148  Sum_probs=71.6

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeEEE
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARMIH   86 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~   86 (379)
                      .+|+|||||++|+.+|..|++.|.+|+++|+.+.....           ..+.....+                      
T Consensus       158 ~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~-----------~~~~~~~~~----------------------  204 (438)
T PRK07251        158 ERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTILPR-----------EEPSVAALA----------------------  204 (438)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCccCCC-----------CCHHHHHHH----------------------
Confidence            47999999999999999999999999999987643210           001100000                      


Q ss_pred             ecCCcEEEeeCCCCCcHHHHhcCCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEEEecCCCChHHH
Q psy9141          87 GQNGKLREIPYDPVHNQVELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAYSGVR  160 (379)
Q Consensus        87 ~~~g~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlVV~AdG~~S~vr  160 (379)
                                       ....+..|++++++++|++++.+++.+.+..  +|++   +.+|.||.|.|+...+.
T Consensus       205 -----------------~~~l~~~GI~i~~~~~V~~i~~~~~~v~v~~--~g~~---i~~D~viva~G~~p~~~  256 (438)
T PRK07251        205 -----------------KQYMEEDGITFLLNAHTTEVKNDGDQVLVVT--EDET---YRFDALLYATGRKPNTE  256 (438)
T ss_pred             -----------------HHHHHHcCCEEEcCCEEEEEEecCCEEEEEE--CCeE---EEcCEEEEeeCCCCCcc
Confidence                             1111235899999999999987666666553  5665   99999999999987643

>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=95.25  E-value=0.021  Score=54.29  Aligned_cols=33  Identities=42%  Similarity=0.671  Sum_probs=31.0

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEccCCC
Q psy9141           8 SVVIVGGGLVGSLSACMFAKNQYEVNLYEARED   40 (379)
Q Consensus         8 dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~   40 (379)
                      +|.|||+|..|...|..|+++|++|+++|+++.
T Consensus         4 ~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~~   36 (308)
T PRK06129          4 SVAIIGAGLIGRAWAIVFARAGHEVRLWDADPA   36 (308)
T ss_pred             EEEEECccHHHHHHHHHHHHCCCeeEEEeCCHH
Confidence            699999999999999999999999999998863

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=95.22  E-value=0.026  Score=53.03  Aligned_cols=33  Identities=30%  Similarity=0.584  Sum_probs=30.7

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEccCC
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEARE   39 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~   39 (379)
                      ..|.|||+|..|...|..|+++|++|+++|+++
T Consensus         4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~   36 (287)
T PRK08293          4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISD   36 (287)
T ss_pred             cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence            369999999999999999999999999999775

>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=95.15  E-value=0.028  Score=52.90  Aligned_cols=34  Identities=29%  Similarity=0.389  Sum_probs=31.4

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCcEEEEccCC
Q psy9141           6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEARE   39 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~   39 (379)
                      ...|.|||+|..|...|..|+++|++|+++|+++
T Consensus         4 ~~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~   37 (292)
T PRK07530          4 IKKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSA   37 (292)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCH
Confidence            3479999999999999999999999999999875

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=95.15  E-value=0.042  Score=46.76  Aligned_cols=32  Identities=28%  Similarity=0.348  Sum_probs=29.7

Q ss_pred             CCCcEEEECCChHHHHHHHHHHhCCCcEEEEc
Q psy9141           5 SKKSVVIVGGGLVGSLSACMFAKNQYEVNLYE   36 (379)
Q Consensus         5 ~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE   36 (379)
                      +...|+|||||.+|..-|..|.+.|.+|+||.
T Consensus        12 ~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIs   43 (157)
T PRK06719         12 HNKVVVIIGGGKIAYRKASGLKDTGAFVTVVS   43 (157)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEc
Confidence            45689999999999999999999999999994

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=95.13  E-value=0.12  Score=56.48  Aligned_cols=33  Identities=24%  Similarity=0.259  Sum_probs=30.8

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEccCC
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEARE   39 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~   39 (379)
                      .+|+|||||.+|+-+|..+.+.|.+|+++.+++
T Consensus       448 k~VvVIGGG~tA~D~A~ta~R~Ga~Vtlv~rr~  480 (944)
T PRK12779        448 KEVFVIGGGNTAMDAARTAKRLGGNVTIVYRRT  480 (944)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCEEEEEEecC
Confidence            479999999999999999999999999998874

>PLN02172 flavin-containing monooxygenase FMO GS-OX

Probab=95.13  E-value=0.055  Score=54.40  Aligned_cols=34  Identities=24%  Similarity=0.213  Sum_probs=31.0

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCcEEEEccCC
Q psy9141           6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEARE   39 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~   39 (379)
                      ..+|+|||+|.+|+-.|..|++.+.+|+++.|..
T Consensus       204 gk~VvVVG~G~Sg~diA~~L~~~a~~V~l~~r~~  237 (461)
T PLN02172        204 NEVVVVIGNFASGADISRDIAKVAKEVHIASRAS  237 (461)
T ss_pred             CCEEEEECCCcCHHHHHHHHHHhCCeEEEEEeec
Confidence            4579999999999999999999999999998764

>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase

Probab=95.12  E-value=0.027  Score=56.54  Aligned_cols=35  Identities=37%  Similarity=0.586  Sum_probs=32.5

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCC
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDI   41 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~   41 (379)
                      .+|+|||||++|+.+|..|++.|.+|+++|+.+..
T Consensus       171 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~  205 (461)
T TIGR01350       171 ESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDRI  205 (461)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCCC
Confidence            58999999999999999999999999999998754

The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.

>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=95.02  E-value=0.033  Score=52.90  Aligned_cols=32  Identities=34%  Similarity=0.573  Sum_probs=30.2

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEccCC
Q psy9141           8 SVVIVGGGLVGSLSACMFAKNQYEVNLYEARE   39 (379)
Q Consensus         8 dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~   39 (379)
                      .|.|||+|..|...|..|++.|++|+++|+++
T Consensus         6 ~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~   37 (311)
T PRK06130          6 NLAIIGAGTMGSGIAALFARKGLQVVLIDVME   37 (311)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            69999999999999999999999999999764

>PLN02545 3-hydroxybutyryl-CoA dehydrogenase

Probab=95.01  E-value=0.032  Score=52.55  Aligned_cols=37  Identities=30%  Similarity=0.287  Sum_probs=32.6

Q ss_pred             CCCCCCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCC
Q psy9141           1 MKCNSKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEARE   39 (379)
Q Consensus         1 M~~m~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~   39 (379)
                      |+.++  .|.|||+|..|...|..|+++|++|+++|+++
T Consensus         1 ~~~~~--~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~   37 (295)
T PLN02545          1 MAEIK--KVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDP   37 (295)
T ss_pred             CCCcC--EEEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence            55433  69999999999999999999999999999875

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=95.00  E-value=0.037  Score=52.74  Aligned_cols=34  Identities=18%  Similarity=0.303  Sum_probs=31.4

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEccCCC
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEARED   40 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~   40 (379)
                      ..|.|||+|..|...|..++.+|++|+++|..+.
T Consensus         8 ~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~   41 (321)
T PRK07066          8 KTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPG   41 (321)
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence            4699999999999999999999999999998763

>TIGR02053 MerA mercuric reductase

Probab=94.91  E-value=0.034  Score=55.94  Aligned_cols=103  Identities=16%  Similarity=0.207  Sum_probs=71.7

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeEEE
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARMIH   86 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~   86 (379)
                      .+|+|||+|++|+-+|..|++.|.+|+++|+.+.....           ..+.....+                      
T Consensus       167 ~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~-----------~d~~~~~~l----------------------  213 (463)
T TIGR02053       167 ESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRLLPR-----------EEPEISAAV----------------------  213 (463)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcCCCc-----------cCHHHHHHH----------------------
Confidence            58999999999999999999999999999987543210           011110000                      


Q ss_pred             ecCCcEEEeeCCCCCcHHHHhcCCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEEEecCCCChHHH
Q psy9141          87 GQNGKLREIPYDPVHNQVELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAYSGVR  160 (379)
Q Consensus        87 ~~~g~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlVV~AdG~~S~vr  160 (379)
                                       ....+..+++++++++|++++.+++.+.+.+..++...+ +++|.||.|.|+.+.+.
T Consensus       214 -----------------~~~l~~~gV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~-i~~D~ViiA~G~~p~~~  269 (463)
T TIGR02053       214 -----------------EEALAEEGIEVVTSAQVKAVSVRGGGKIITVEKPGGQGE-VEADELLVATGRRPNTD  269 (463)
T ss_pred             -----------------HHHHHHcCCEEEcCcEEEEEEEcCCEEEEEEEeCCCceE-EEeCEEEEeECCCcCCC
Confidence                             111123589999999999998776665555431222234 99999999999987654

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.

>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=94.90  E-value=0.034  Score=52.02  Aligned_cols=33  Identities=21%  Similarity=0.396  Sum_probs=30.8

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEccCCC
Q psy9141           8 SVVIVGGGLVGSLSACMFAKNQYEVNLYEARED   40 (379)
Q Consensus         8 dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~   40 (379)
                      +|.|||+|..|...|..|+++|++|+++|.++.
T Consensus         5 kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~   37 (282)
T PRK05808          5 KIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDA   37 (282)
T ss_pred             EEEEEccCHHHHHHHHHHHHCCCceEEEeCCHH
Confidence            699999999999999999999999999997753

>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional

Probab=94.90  E-value=0.031  Score=55.37  Aligned_cols=34  Identities=24%  Similarity=0.396  Sum_probs=31.6

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEccCCC
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEARED   40 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~   40 (379)
                      ..|.|||.|..|+.+|..|+++|++|+++|+++.
T Consensus         4 ~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~   37 (415)
T PRK11064          4 ETISVIGLGYIGLPTAAAFASRQKQVIGVDINQH   37 (415)
T ss_pred             cEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHH
Confidence            4699999999999999999999999999998764

>PRK06416 dihydrolipoamide dehydrogenase; Reviewed

Probab=94.88  E-value=0.035  Score=55.81  Aligned_cols=35  Identities=40%  Similarity=0.563  Sum_probs=32.3

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCC
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDI   41 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~   41 (379)
                      .+|+|||||++|+-+|..|++.|.+|+++|+.+..
T Consensus       173 ~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~  207 (462)
T PRK06416        173 KSLVVIGGGYIGVEFASAYASLGAEVTIVEALPRI  207 (462)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCc
Confidence            47999999999999999999999999999988754

>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=94.86  E-value=0.036  Score=52.16  Aligned_cols=33  Identities=33%  Similarity=0.623  Sum_probs=30.8

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEccCC
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEARE   39 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~   39 (379)
                      ..|.|||+|..|...|..|+++|++|+++|+++
T Consensus         4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~   36 (291)
T PRK06035          4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSE   36 (291)
T ss_pred             cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCH
Confidence            369999999999999999999999999999875

>KOG3851|consensus

Probab=94.85  E-value=0.016  Score=54.13  Aligned_cols=35  Identities=31%  Similarity=0.402  Sum_probs=29.7

Q ss_pred             CCCcEEEECCChHHHHHHHHHHhC-CC-cEEEEccCC
Q psy9141           5 SKKSVVIVGGGLVGSLSACMFAKN-QY-EVNLYEARE   39 (379)
Q Consensus         5 ~~~dVvIVGaGpaGl~~A~~La~~-G~-~V~viE~~~   39 (379)
                      +++.|+|||||-+|+..|..+.+. |. +|.|+|-..
T Consensus        38 ~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e   74 (446)
T KOG3851|consen   38 KHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAE   74 (446)
T ss_pred             cceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchh
Confidence            468999999999999999999876 43 799998665

>PRK05708 2-dehydropantoate 2-reductase; Provisional

Probab=94.78  E-value=0.041  Score=52.18  Aligned_cols=33  Identities=33%  Similarity=0.459  Sum_probs=30.5

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEccCC
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEARE   39 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~   39 (379)
                      .+|+|||+|..|...|..|++.|.+|+++.|..
T Consensus         3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~   35 (305)
T PRK05708          3 MTWHILGAGSLGSLWACRLARAGLPVRLILRDR   35 (305)
T ss_pred             ceEEEECCCHHHHHHHHHHHhCCCCeEEEEech
Confidence            369999999999999999999999999999863

>KOG1336|consensus

Probab=94.74  E-value=0.13  Score=50.72  Aligned_cols=104  Identities=15%  Similarity=0.227  Sum_probs=65.2

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCC--cEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceee
Q psy9141           6 KKSVVIVGGGLVGSLSACMFAKNQY--EVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRAR   83 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La~~G~--~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~   83 (379)
                      ...++|||+|++|..|+..+.+.|.  +++++-+.......     +                    .+|       ...
T Consensus        74 ar~fvivGgG~~g~vaie~~r~~g~~~ri~l~~~~~~~pyd-----r--------------------~~L-------s~~  121 (478)
T KOG1336|consen   74 ARHFVIVGGGPGGAVAIETLRQVGFTERIALVKREYLLPYD-----R--------------------ARL-------SKF  121 (478)
T ss_pred             cceEEEEcCCchhhhhHhhHHhhCCCcceEEEeccccCccc-----c--------------------hhc-------ccc
Confidence            4589999999999999999998876  45555433222100     0                    000       001


Q ss_pred             EEEecCCcEEEeeCCCCCcHHHHhcCCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEEEecCCC
Q psy9141          84 MIHGQNGKLREIPYDPVHNQVELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGA  155 (379)
Q Consensus        84 ~~~~~~g~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlVV~AdG~  155 (379)
                      ......+  .....      ...-+..++++++++.|+.++.....+.  +. +|++   +..+.+|.|+|.
T Consensus       122 ~~~~~~~--~a~r~------~e~Yke~gIe~~~~t~v~~~D~~~K~l~--~~-~Ge~---~kys~LilATGs  179 (478)
T KOG1336|consen  122 LLTVGEG--LAKRT------PEFYKEKGIELILGTSVVKADLASKTLV--LG-NGET---LKYSKLIIATGS  179 (478)
T ss_pred             eeecccc--ccccC------hhhHhhcCceEEEcceeEEeeccccEEE--eC-CCce---eecceEEEeecC
Confidence            1111111  00000      1112235899999999999988776654  45 8988   999999999999

>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional

Probab=94.74  E-value=0.073  Score=53.41  Aligned_cols=35  Identities=31%  Similarity=0.591  Sum_probs=32.5

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCC
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDI   41 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~   41 (379)
                      .+|+|||||+.|+-+|..|++.|.+|+++|+.+..
T Consensus       176 ~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~~  210 (461)
T PRK05249        176 RSLIIYGAGVIGCEYASIFAALGVKVTLINTRDRL  210 (461)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCc
Confidence            57999999999999999999999999999988754

>PTZ00082 L-lactate dehydrogenase; Provisional

Probab=94.73  E-value=0.055  Score=51.67  Aligned_cols=41  Identities=20%  Similarity=0.496  Sum_probs=34.9

Q ss_pred             CCCCCCCcEEEECCChHHHHHHHHHHhCCC-cEEEEccCCCC
Q psy9141           1 MKCNSKKSVVIVGGGLVGSLSACMFAKNQY-EVNLYEAREDI   41 (379)
Q Consensus         1 M~~m~~~dVvIVGaGpaGl~~A~~La~~G~-~V~viE~~~~~   41 (379)
                      |.+.+...|+|||+|-+|..+|..++..|+ +++++|.++..
T Consensus         1 ~~~~~~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~~   42 (321)
T PTZ00082          1 MTMIKRRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKNI   42 (321)
T ss_pred             CCCCCCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCch
Confidence            554455689999999999999999999996 89999987654

>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family

Probab=94.72  E-value=0.16  Score=49.55  Aligned_cols=45  Identities=20%  Similarity=0.259  Sum_probs=35.3

Q ss_pred             hcCCCCeEEeCceEEEEEecCCeEEEEEccCC-ceeEEEeecEEEecCCCCh
Q psy9141         107 EQYPDCNIYFQHKLINLDVNSGNVTFYRTEDN-SETKITDNQLIIGADGAYS  157 (379)
Q Consensus       107 ~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G-~~~~~i~adlVV~AdG~~S  157 (379)
                      .+..||+|+++++|++|  +++++.+.+. ++ ..   ++||.||.|+|..|
T Consensus        96 l~~~gV~i~~~~~V~~i--~~~~~~v~~~-~~~~~---~~a~~vIlAtGG~s  141 (376)
T TIGR03862        96 LAEQGVQFHTRHRWIGW--QGGTLRFETP-DGQST---IEADAVVLALGGAS  141 (376)
T ss_pred             HHHCCCEEEeCCEEEEE--eCCcEEEEEC-CCceE---EecCEEEEcCCCcc
Confidence            44579999999999999  3345667665 33 34   89999999999987

This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=94.64  E-value=0.029  Score=44.04  Aligned_cols=35  Identities=26%  Similarity=0.379  Sum_probs=31.0

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHhCCCcEEEEccC
Q psy9141           4 NSKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAR   38 (379)
Q Consensus         4 m~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~   38 (379)
                      .+...|+|||||.+|..-+..|.+.|.+|+|+.+.
T Consensus         5 l~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~   39 (103)
T PF13241_consen    5 LKGKRVLVVGGGPVAARKARLLLEAGAKVTVISPE   39 (103)
T ss_dssp             -TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESS
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCc
Confidence            45678999999999999999999999999999876

>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=94.63  E-value=0.039  Score=53.22  Aligned_cols=33  Identities=24%  Similarity=0.406  Sum_probs=31.2

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEccCCC
Q psy9141           8 SVVIVGGGLVGSLSACMFAKNQYEVNLYEARED   40 (379)
Q Consensus         8 dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~   40 (379)
                      +|.|||.|.+||..|..|++.|++|+.+|.++.
T Consensus         2 kI~viGtGYVGLv~g~~lA~~GHeVv~vDid~~   34 (414)
T COG1004           2 KITVIGTGYVGLVTGACLAELGHEVVCVDIDES   34 (414)
T ss_pred             ceEEECCchHHHHHHHHHHHcCCeEEEEeCCHH
Confidence            599999999999999999999999999998864

>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=94.60  E-value=0.039  Score=51.79  Aligned_cols=33  Identities=27%  Similarity=0.600  Sum_probs=30.8

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEccCCC
Q psy9141           8 SVVIVGGGLVGSLSACMFAKNQYEVNLYEARED   40 (379)
Q Consensus         8 dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~   40 (379)
                      .|.|||+|..|...|..|+++|++|+++|+++.
T Consensus         3 ~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~   35 (288)
T PRK09260          3 KLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQE   35 (288)
T ss_pred             EEEEECccHHHHHHHHHHHhCCCcEEEEeCCHH
Confidence            699999999999999999999999999998753

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=94.58  E-value=0.28  Score=49.46  Aligned_cols=34  Identities=24%  Similarity=0.233  Sum_probs=30.4

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCC-cEEEEccCCC
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKNQY-EVNLYEARED   40 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~G~-~V~viE~~~~   40 (379)
                      ..|+|||+|.+|+-+|..+.+.|. +|+|+++.+.
T Consensus       283 k~VvVIGgG~~a~d~A~~a~~~Ga~~Vtvv~r~~~  317 (467)
T TIGR01318       283 KRVVVLGGGDTAMDCVRTAIRLGAASVTCAYRRDE  317 (467)
T ss_pred             CEEEEECCcHHHHHHHHHHHHcCCCeEEEEEecCc
Confidence            579999999999999999999995 7999998753

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>PRK06370 mercuric reductase; Validated

Probab=94.56  E-value=0.046  Score=54.97  Aligned_cols=103  Identities=17%  Similarity=0.222  Sum_probs=70.9

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeEEE
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARMIH   86 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~   86 (379)
                      .+|+|||||+.|+-+|..|++.|.+|+++|+.+.....           ..+...+.+                      
T Consensus       172 ~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~~-----------~~~~~~~~l----------------------  218 (463)
T PRK06370        172 EHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRLLPR-----------EDEDVAAAV----------------------  218 (463)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCCCcc-----------cCHHHHHHH----------------------
Confidence            58999999999999999999999999999987643210           011110000                      


Q ss_pred             ecCCcEEEeeCCCCCcHHHHhcCCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEEEecCCCChHHH
Q psy9141          87 GQNGKLREIPYDPVHNQVELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAYSGVR  160 (379)
Q Consensus        87 ~~~g~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlVV~AdG~~S~vr  160 (379)
                                       ....+..|++++++++|++++.+++++.+.+..++...+ +.+|.||.|.|+...+.
T Consensus       219 -----------------~~~l~~~GV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~-i~~D~Vi~A~G~~pn~~  274 (463)
T PRK06370        219 -----------------REILEREGIDVRLNAECIRVERDGDGIAVGLDCNGGAPE-ITGSHILVAVGRVPNTD  274 (463)
T ss_pred             -----------------HHHHHhCCCEEEeCCEEEEEEEcCCEEEEEEEeCCCceE-EEeCEEEECcCCCcCCC
Confidence                             111123589999999999998876665544321122123 99999999999887654

>PRK00066 ldh L-lactate dehydrogenase; Reviewed

Probab=94.55  E-value=0.065  Score=51.04  Aligned_cols=40  Identities=28%  Similarity=0.421  Sum_probs=34.6

Q ss_pred             CCCCCCCcEEEECCChHHHHHHHHHHhCCC--cEEEEccCCC
Q psy9141           1 MKCNSKKSVVIVGGGLVGSLSACMFAKNQY--EVNLYEARED   40 (379)
Q Consensus         1 M~~m~~~dVvIVGaGpaGl~~A~~La~~G~--~V~viE~~~~   40 (379)
                      |++....+|.|||+|-+|.++|+.|+..|+  ++.++|.+..
T Consensus         1 ~~~~~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~   42 (315)
T PRK00066          1 MMKKQHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKE   42 (315)
T ss_pred             CCCCCCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCc
Confidence            555556799999999999999999999998  7999998653

>PRK07818 dihydrolipoamide dehydrogenase; Reviewed

Probab=94.52  E-value=0.047  Score=54.93  Aligned_cols=35  Identities=29%  Similarity=0.407  Sum_probs=32.2

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCC
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDI   41 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~   41 (379)
                      .+|+|||||+.|+-+|..|++.|.+|+|+|+.+..
T Consensus       173 ~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~  207 (466)
T PRK07818        173 KSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDRA  207 (466)
T ss_pred             CeEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCc
Confidence            48999999999999999999999999999987644

>PRK12921 2-dehydropantoate 2-reductase; Provisional

Probab=94.48  E-value=0.048  Score=51.43  Aligned_cols=30  Identities=20%  Similarity=0.336  Sum_probs=28.8

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEcc
Q psy9141           8 SVVIVGGGLVGSLSACMFAKNQYEVNLYEA   37 (379)
Q Consensus         8 dVvIVGaGpaGl~~A~~La~~G~~V~viE~   37 (379)
                      +|+|||+|..|.++|..|++.|++|+++++
T Consensus         2 kI~IiG~G~iG~~~a~~L~~~g~~V~~~~r   31 (305)
T PRK12921          2 RIAVVGAGAVGGTFGGRLLEAGRDVTFLVR   31 (305)
T ss_pred             eEEEECCCHHHHHHHHHHHHCCCceEEEec
Confidence            599999999999999999999999999987

>PRK08229 2-dehydropantoate 2-reductase; Provisional

Probab=94.47  E-value=0.052  Score=52.20  Aligned_cols=31  Identities=19%  Similarity=0.349  Sum_probs=29.4

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEccC
Q psy9141           8 SVVIVGGGLVGSLSACMFAKNQYEVNLYEAR   38 (379)
Q Consensus         8 dVvIVGaGpaGl~~A~~La~~G~~V~viE~~   38 (379)
                      +|.|||+|..|...|..|+++|++|+++++.
T Consensus         4 kI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~   34 (341)
T PRK08229          4 RICVLGAGSIGCYLGGRLAAAGADVTLIGRA   34 (341)
T ss_pred             eEEEECCCHHHHHHHHHHHhcCCcEEEEecH
Confidence            6999999999999999999999999999874

>PRK06522 2-dehydropantoate 2-reductase; Reviewed

Probab=94.45  E-value=0.05  Score=51.26  Aligned_cols=32  Identities=28%  Similarity=0.505  Sum_probs=29.8

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEccCC
Q psy9141           8 SVVIVGGGLVGSLSACMFAKNQYEVNLYEARE   39 (379)
Q Consensus         8 dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~   39 (379)
                      .|+|||+|-.|..+|..|++.|++|+++++++
T Consensus         2 ~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~   33 (304)
T PRK06522          2 KIAILGAGAIGGLFGAALAQAGHDVTLVARRG   33 (304)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCeEEEEECCh
Confidence            49999999999999999999999999999853

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=94.36  E-value=0.075  Score=47.32  Aligned_cols=34  Identities=24%  Similarity=0.383  Sum_probs=30.8

Q ss_pred             CCCcEEEECCChHHHHHHHHHHhCCCcEEEEccC
Q psy9141           5 SKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAR   38 (379)
Q Consensus         5 ~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~   38 (379)
                      +...|+|||||.+|..-+..|.+.|.+|+|++..
T Consensus         8 ~gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~   41 (205)
T TIGR01470         8 EGRAVLVVGGGDVALRKARLLLKAGAQLRVIAEE   41 (205)
T ss_pred             CCCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCC
Confidence            4458999999999999999999999999999754

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>PRK07502 cyclohexadienyl dehydrogenase; Validated

Probab=94.35  E-value=0.054  Score=51.38  Aligned_cols=39  Identities=23%  Similarity=0.233  Sum_probs=32.9

Q ss_pred             CCCCCCCcEEEECCChHHHHHHHHHHhCCC--cEEEEccCC
Q psy9141           1 MKCNSKKSVVIVGGGLVGSLSACMFAKNQY--EVNLYEARE   39 (379)
Q Consensus         1 M~~m~~~dVvIVGaGpaGl~~A~~La~~G~--~V~viE~~~   39 (379)
                      |+.+....|.|||+|..|.++|..|++.|+  +|+++++++
T Consensus         1 ~~~~~~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~   41 (307)
T PRK07502          1 MSAPLFDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSA   41 (307)
T ss_pred             CCccCCcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCH
Confidence            665444689999999999999999999985  899998764

>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A

Probab=94.35  E-value=0.047  Score=45.23  Aligned_cols=32  Identities=28%  Similarity=0.402  Sum_probs=28.2

Q ss_pred             EEEECCChHHHHHHHHHHhCCCcEEEEccCCC
Q psy9141           9 VVIVGGGLVGSLSACMFAKNQYEVNLYEARED   40 (379)
Q Consensus         9 VvIVGaGpaGl~~A~~La~~G~~V~viE~~~~   40 (379)
                      ++|+|+|+.+.++|..++..|++|+|+|.++.
T Consensus         1 L~I~GaG~va~al~~la~~lg~~v~v~d~r~e   32 (136)
T PF13478_consen    1 LVIFGAGHVARALARLAALLGFRVTVVDPRPE   32 (136)
T ss_dssp             EEEES-STCHHHHHHHHHHCTEEEEEEES-CC
T ss_pred             CEEEeCcHHHHHHHHHHHhCCCEEEEEcCCcc
Confidence            58999999999999999999999999998865

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=94.34  E-value=0.67  Score=48.84  Aligned_cols=33  Identities=21%  Similarity=0.216  Sum_probs=29.5

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCC-cEEEEccCC
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKNQY-EVNLYEARE   39 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~G~-~V~viE~~~   39 (379)
                      .+|+|||||.+|+-+|..+.+.|. +|+++.+++
T Consensus       469 k~VvVIGgG~~a~d~A~~a~r~ga~~Vt~i~~~~  502 (654)
T PRK12769        469 LNVVVLGGGDTAMDCVRTALRHGASNVTCAYRRD  502 (654)
T ss_pred             CeEEEECCcHHHHHHHHHHHHcCCCeEEEeEecC
Confidence            479999999999999999999996 699998775

>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2

Probab=94.25  E-value=0.067  Score=47.44  Aligned_cols=35  Identities=26%  Similarity=0.257  Sum_probs=32.1

Q ss_pred             CCCcEEEECCChHHHHHHHHHHhCCC-cEEEEccCC
Q psy9141           5 SKKSVVIVGGGLVGSLSACMFAKNQY-EVNLYEARE   39 (379)
Q Consensus         5 ~~~dVvIVGaGpaGl~~A~~La~~G~-~V~viE~~~   39 (379)
                      ++..|+|||+|-.|...|..|++.|+ +++++|.+.
T Consensus        20 ~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D~   55 (200)
T TIGR02354        20 EQATVAICGLGGLGSNVAINLARAGIGKLILVDFDV   55 (200)
T ss_pred             hCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCCE
Confidence            45789999999999999999999999 699999884

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.

>PRK15116 sulfur acceptor protein CsdL; Provisional

Probab=94.20  E-value=0.072  Score=49.38  Aligned_cols=37  Identities=24%  Similarity=0.356  Sum_probs=32.8

Q ss_pred             CCCcEEEECCChHHHHHHHHHHhCCC-cEEEEccCCCC
Q psy9141           5 SKKSVVIVGGGLVGSLSACMFAKNQY-EVNLYEAREDI   41 (379)
Q Consensus         5 ~~~dVvIVGaGpaGl~~A~~La~~G~-~V~viE~~~~~   41 (379)
                      +...|+|||+|-+|..+|-.|++.|+ +++|+|.+...
T Consensus        29 ~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~V~   66 (268)
T PRK15116         29 ADAHICVVGIGGVGSWAAEALARTGIGAITLIDMDDVC   66 (268)
T ss_pred             cCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCEec
Confidence            45789999999999999999999996 89999977643

>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit

Probab=94.19  E-value=0.52  Score=51.64  Aligned_cols=33  Identities=30%  Similarity=0.313  Sum_probs=29.4

Q ss_pred             CcEEEECCChHHHHHHHHHHhC-CC-cEEEEccCC
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKN-QY-EVNLYEARE   39 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~-G~-~V~viE~~~   39 (379)
                      .+|+|||||.+|+-+|..+.+. |. +|++++++.
T Consensus       667 K~VVVIGGGnvAmD~Ar~a~Rl~Ga~kVtLVyRr~  701 (1012)
T TIGR03315       667 KHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRT  701 (1012)
T ss_pred             CeEEEECCCHHHHHHHHHHHHhCCCceEEEEEccC
Confidence            4799999999999999998886 85 799999875

Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.

>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=94.16  E-value=0.067  Score=51.22  Aligned_cols=32  Identities=28%  Similarity=0.438  Sum_probs=30.3

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEccCC
Q psy9141           8 SVVIVGGGLVGSLSACMFAKNQYEVNLYEARE   39 (379)
Q Consensus         8 dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~   39 (379)
                      .|.|||+|..|...|..|++.|++|+++++++
T Consensus         6 ~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~   37 (328)
T PRK14618          6 RVAVLGAGAWGTALAVLAASKGVPVRLWARRP   37 (328)
T ss_pred             eEEEECcCHHHHHHHHHHHHCCCeEEEEeCCH
Confidence            69999999999999999999999999999864

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=94.14  E-value=0.087  Score=46.81  Aligned_cols=34  Identities=35%  Similarity=0.391  Sum_probs=30.8

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHhCCCcEEEEcc
Q psy9141           4 NSKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEA   37 (379)
Q Consensus         4 m~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~   37 (379)
                      .+...|+|||||-+|...|..|.+.|.+|+|+++
T Consensus         8 l~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~   41 (202)
T PRK06718          8 LSNKRVVIVGGGKVAGRRAITLLKYGAHIVVISP   41 (202)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcC
Confidence            3456899999999999999999999999999974

>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP

Probab=94.13  E-value=0.054  Score=44.68  Aligned_cols=36  Identities=31%  Similarity=0.359  Sum_probs=31.2

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCC-cEEEEccCCCC
Q psy9141           6 KKSVVIVGGGLVGSLSACMFAKNQY-EVNLYEAREDI   41 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La~~G~-~V~viE~~~~~   41 (379)
                      +..|+|||+|-.|..+|..|++.|. +++|+|.+...
T Consensus         2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~v~   38 (135)
T PF00899_consen    2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDIVE   38 (135)
T ss_dssp             T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSBB-
T ss_pred             CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCccee
Confidence            4579999999999999999999999 79999987643

Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....

>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1

Probab=94.05  E-value=0.07  Score=45.87  Aligned_cols=35  Identities=29%  Similarity=0.288  Sum_probs=30.2

Q ss_pred             CCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCC
Q psy9141           5 SKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEARE   39 (379)
Q Consensus         5 ~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~   39 (379)
                      ++..|+|+|+|.+|..+|..|...|.+|+++|..+
T Consensus        19 ~p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~   53 (168)
T PF01262_consen   19 PPAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERP   53 (168)
T ss_dssp             -T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSH
T ss_pred             CCeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCH
Confidence            35789999999999999999999999999999775

4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....

>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated

Probab=93.98  E-value=0.068  Score=50.89  Aligned_cols=32  Identities=25%  Similarity=0.479  Sum_probs=30.0

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEccCC
Q psy9141           8 SVVIVGGGLVGSLSACMFAKNQYEVNLYEARE   39 (379)
Q Consensus         8 dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~   39 (379)
                      +|.|||+|..|...|..|++.|++|+++++.+
T Consensus         3 kI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~   34 (325)
T PRK00094          3 KIAVLGAGSWGTALAIVLARNGHDVTLWARDP   34 (325)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            69999999999999999999999999998764

>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated

Probab=93.93  E-value=0.08  Score=53.84  Aligned_cols=35  Identities=31%  Similarity=0.451  Sum_probs=32.2

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCC
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDI   41 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~   41 (379)
                      ..|.|||+|..|...|..|+++|++|+++|+++..
T Consensus         8 ~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e~   42 (507)
T PRK08268          8 ATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAGA   42 (507)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHH
Confidence            46999999999999999999999999999988754

>PRK09853 putative selenate reductase subunit YgfK; Provisional

Probab=93.91  E-value=0.51  Score=51.61  Aligned_cols=33  Identities=30%  Similarity=0.297  Sum_probs=29.1

Q ss_pred             CcEEEECCChHHHHHHHHHHhC-C-CcEEEEccCC
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKN-Q-YEVNLYEARE   39 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~-G-~~V~viE~~~   39 (379)
                      .+|+|||||.+|+-+|..+.+. | .+|+++.+++
T Consensus       669 KrVVVIGGGnVAmD~Ar~a~RlgGakeVTLVyRr~  703 (1019)
T PRK09853        669 KHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRT  703 (1019)
T ss_pred             CEEEEECCChHHHHHHHHHHhcCCCceEEEEEccC
Confidence            4799999999999999998887 5 4899999875

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=93.89  E-value=0.083  Score=42.03  Aligned_cols=32  Identities=25%  Similarity=0.363  Sum_probs=28.8

Q ss_pred             EEEECCChHHHHHHHHHHhCCCcEEEEccCCC
Q psy9141           9 VVIVGGGLVGSLSACMFAKNQYEVNLYEARED   40 (379)
Q Consensus         9 VvIVGaGpaGl~~A~~La~~G~~V~viE~~~~   40 (379)
                      |+|+|.|..|..+|..|.+.+.+|+++|+++.
T Consensus         1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~   32 (116)
T PF02254_consen    1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPE   32 (116)
T ss_dssp             EEEES-SHHHHHHHHHHHHTTSEEEEEESSHH
T ss_pred             eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcH
Confidence            79999999999999999998889999999873

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases

Probab=93.87  E-value=0.08  Score=50.28  Aligned_cols=33  Identities=33%  Similarity=0.494  Sum_probs=30.0

Q ss_pred             cEEEECCChHHHHHHHHHHhCCC--cEEEEccCCC
Q psy9141           8 SVVIVGGGLVGSLSACMFAKNQY--EVNLYEARED   40 (379)
Q Consensus         8 dVvIVGaGpaGl~~A~~La~~G~--~V~viE~~~~   40 (379)
                      +|.|||+|.+|.++|+.|++.|+  +++++|++..
T Consensus         2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~   36 (308)
T cd05292           2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKA   36 (308)
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCch
Confidence            59999999999999999999994  8999998753

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]

Probab=93.82  E-value=0.31  Score=47.48  Aligned_cols=106  Identities=17%  Similarity=0.134  Sum_probs=65.1

Q ss_pred             EEEECCChHHHHHHHHHHhC--CCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeEEE
Q psy9141           9 VVIVGGGLVGSLSACMFAKN--QYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARMIH   86 (379)
Q Consensus         9 VvIVGaGpaGl~~A~~La~~--G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~   86 (379)
                      ++|||+|++|+.+|..|.+.  +.+++++.+.+......  .+      +             ...+............ 
T Consensus         1 ivivG~g~aG~~aa~~l~~~~~~~~i~i~~~~~~~~~~~--~~------~-------------~~~~~~~~~~~~~~~~-   58 (415)
T COG0446           1 IVIVGGGAAGLSAATTLRRLLLAAEITLIGREPKYSYYR--CP------L-------------SLYVGGGIASLEDLRY-   58 (415)
T ss_pred             CEEECCcHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCCC--Cc------c-------------chHHhcccCCHHHhcc-
Confidence            58999999999999998885  45788777765443210  00      0             0000000000000000 


Q ss_pred             ecCCcEEEeeCCCCCcHHHHhcCCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEEEecCCCChHH
Q psy9141          87 GQNGKLREIPYDPVHNQVELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAYSGV  159 (379)
Q Consensus        87 ~~~g~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlVV~AdG~~S~v  159 (379)
                      .       .+   .     . ...++.++.+++|+++......+...   +| .   +..|.+|.|+|.....
T Consensus        59 ~-------~~---~-----~-~~~~i~~~~~~~v~~id~~~~~v~~~---~g-~---~~yd~LvlatGa~~~~  108 (415)
T COG0446          59 P-------PR---F-----N-RATGIDVRTGTEVTSIDPENKVVLLD---DG-E---IEYDYLVLATGARPRP  108 (415)
T ss_pred             c-------ch---h-----H-HhhCCEEeeCCEEEEecCCCCEEEEC---CC-c---ccccEEEEcCCCcccC
Confidence            0       00   1     1 23588999999999998777665544   67 4   8999999999988654

>PRK06116 glutathione reductase; Validated

Probab=93.81  E-value=0.082  Score=52.93  Aligned_cols=35  Identities=23%  Similarity=0.293  Sum_probs=32.3

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCC
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDI   41 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~   41 (379)
                      .+|+|||+|++|+-+|..|++.|.+|+++++.+..
T Consensus       168 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~  202 (450)
T PRK06116        168 KRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDAP  202 (450)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCC
Confidence            57999999999999999999999999999987644

>TIGR00518 alaDH alanine dehydrogenase

Probab=93.80  E-value=0.085  Score=51.47  Aligned_cols=35  Identities=29%  Similarity=0.390  Sum_probs=31.9

Q ss_pred             CCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCC
Q psy9141           5 SKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEARE   39 (379)
Q Consensus         5 ~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~   39 (379)
                      ...+|+|||+|.+|+.+|..|.+.|.+|+++|+++
T Consensus       166 ~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~  200 (370)
T TIGR00518       166 EPGDVTIIGGGVVGTNAAKMANGLGATVTILDINI  200 (370)
T ss_pred             CCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence            45679999999999999999999999999999874

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant

Probab=93.72  E-value=0.085  Score=52.78  Aligned_cols=35  Identities=31%  Similarity=0.390  Sum_probs=32.1

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCC
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDI   41 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~   41 (379)
                      .+|+|||+|++|+-+|..|++.|.+|+++|+.+..
T Consensus       167 ~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~  201 (446)
T TIGR01424       167 KSILILGGGYIAVEFAGIWRGLGVQVTLIYRGELI  201 (446)
T ss_pred             CeEEEECCcHHHHHHHHHHHHcCCeEEEEEeCCCC
Confidence            47999999999999999999999999999987654

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.

>PLN02507 glutathione reductase

Probab=93.70  E-value=0.084  Score=53.67  Aligned_cols=35  Identities=26%  Similarity=0.377  Sum_probs=32.1

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCC
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDI   41 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~   41 (379)
                      .+|+|||||+.|+-+|..|++.|.+|+|+++.+.+
T Consensus       204 k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~~  238 (499)
T PLN02507        204 KRAVVLGGGYIAVEFASIWRGMGATVDLFFRKELP  238 (499)
T ss_pred             CeEEEECCcHHHHHHHHHHHHcCCeEEEEEecCCc
Confidence            47999999999999999999999999999987644

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=93.70  E-value=0.082  Score=52.09  Aligned_cols=34  Identities=26%  Similarity=0.188  Sum_probs=31.2

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCcEEEEccCC
Q psy9141           6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEARE   39 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~   39 (379)
                      ...|+|+|+|+.|+.+|..++..|.+|+++|.++
T Consensus       202 GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~  235 (413)
T cd00401         202 GKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDP  235 (413)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCh
Confidence            3579999999999999999999999999999875

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=93.65  E-value=0.093  Score=52.38  Aligned_cols=35  Identities=34%  Similarity=0.452  Sum_probs=32.2

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCC
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDI   41 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~   41 (379)
                      .+|+|||+|+.|+-+|..|++.|.+|+++|+.+..
T Consensus       159 ~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~~  193 (441)
T PRK08010        159 GHLGILGGGYIGVEFASMFANFGSKVTILEAASLF  193 (441)
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence            47999999999999999999999999999987644

>PRK04148 hypothetical protein; Provisional

Probab=93.56  E-value=0.073  Score=43.83  Aligned_cols=33  Identities=21%  Similarity=0.249  Sum_probs=30.0

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEccCCC
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEARED   40 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~   40 (379)
                      ..|++||.| .|...|..|++.|++|+.+|.++.
T Consensus        18 ~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~   50 (134)
T PRK04148         18 KKIVELGIG-FYFKVAKKLKESGFDVIVIDINEK   50 (134)
T ss_pred             CEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHH
Confidence            469999999 999999999999999999997763

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=93.55  E-value=0.1  Score=50.14  Aligned_cols=37  Identities=22%  Similarity=0.338  Sum_probs=33.1

Q ss_pred             CCCcEEEECCChHHHHHHHHHHhCCC-cEEEEccCCCC
Q psy9141           5 SKKSVVIVGGGLVGSLSACMFAKNQY-EVNLYEAREDI   41 (379)
Q Consensus         5 ~~~dVvIVGaGpaGl~~A~~La~~G~-~V~viE~~~~~   41 (379)
                      +...|+|||+|-.|..+|..|++.|+ +++|+|.+...
T Consensus        23 ~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ve   60 (338)
T PRK12475         23 REKHVLIVGAGALGAANAEALVRAGIGKLTIADRDYVE   60 (338)
T ss_pred             cCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCccc
Confidence            45689999999999999999999998 89999988633

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=93.45  E-value=0.085  Score=53.39  Aligned_cols=35  Identities=17%  Similarity=0.327  Sum_probs=31.9

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCC
Q psy9141           6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEARED   40 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~   40 (379)
                      ...|+|+|+|++|+.++..+...|.+|+++|.++.
T Consensus       165 g~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~  199 (509)
T PRK09424        165 PAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPE  199 (509)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            56899999999999999999999999999998763

>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=93.40  E-value=0.093  Score=50.17  Aligned_cols=32  Identities=25%  Similarity=0.470  Sum_probs=29.9

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEccCC
Q psy9141           8 SVVIVGGGLVGSLSACMFAKNQYEVNLYEARE   39 (379)
Q Consensus         8 dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~   39 (379)
                      +|.|||+|-.|.++|..|++.|++|++++|+.
T Consensus         2 kI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~   33 (326)
T PRK14620          2 KISILGAGSFGTAIAIALSSKKISVNLWGRNH   33 (326)
T ss_pred             EEEEECcCHHHHHHHHHHHHCCCeEEEEecCH
Confidence            49999999999999999999999999998864

>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase

Probab=93.33  E-value=0.088  Score=52.12  Aligned_cols=33  Identities=24%  Similarity=0.347  Sum_probs=30.9

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEccCCC
Q psy9141           8 SVVIVGGGLVGSLSACMFAKNQYEVNLYEARED   40 (379)
Q Consensus         8 dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~   40 (379)
                      +|.|||.|..|+.+|..|++.|++|+++|+++.
T Consensus         2 kI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~   34 (411)
T TIGR03026         2 KIAVIGLGYVGLPLAALLADLGHEVTGVDIDQE   34 (411)
T ss_pred             EEEEECCCchhHHHHHHHHhcCCeEEEEECCHH
Confidence            599999999999999999999999999998764

All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.

>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E

Probab=93.33  E-value=0.87  Score=47.10  Aligned_cols=50  Identities=14%  Similarity=0.252  Sum_probs=38.5

Q ss_pred             cCCCCeEEeCceEEEEEecCCeEE---EE-EccCCceeEEEeecEEEecCCCChHH
Q psy9141         108 QYPDCNIYFQHKLINLDVNSGNVT---FY-RTEDNSETKITDNQLIIGADGAYSGV  159 (379)
Q Consensus       108 ~~~gv~i~~~~~v~~i~~~~~~v~---v~-~~~~G~~~~~i~adlVV~AdG~~S~v  159 (379)
                      ...+++|+.++.++++..+++.+.   +. .. +|+... +.|+-||.|+|.++.+
T Consensus       130 ~~~gi~i~~~~~~~~Li~~~g~v~Ga~~~~~~-~g~~~~-i~AkaVILATGG~~~~  183 (565)
T TIGR01816       130 LKADTSFFNEYFALDLLMEDGECRGVIAYCLE-TGEIHR-FRAKAVVLATGGYGRI  183 (565)
T ss_pred             HhCCCEEEeccEEEEEEeeCCEEEEEEEEEcC-CCcEEE-EEeCeEEECCCCcccc
Confidence            346899999999999887666443   22 23 677666 8999999999999853

coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.

>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=93.27  E-value=1.7  Score=41.23  Aligned_cols=96  Identities=18%  Similarity=0.176  Sum_probs=68.8

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeEEE
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARMIH   86 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~   86 (379)
                      .+|+|||||-+.+--|+.|++.+-+|+++=|++..+..             +..+                         
T Consensus       144 k~v~ViGgG~sAve~Al~L~~~a~~Vtlv~r~~~~ra~-------------~~~~-------------------------  185 (305)
T COG0492         144 KDVVVIGGGDSAVEEALYLSKIAKKVTLVHRRDEFRAE-------------EILV-------------------------  185 (305)
T ss_pred             CeEEEEcCCHHHHHHHHHHHHhcCeEEEEecCcccCcC-------------HHHH-------------------------
Confidence            49999999999999999999999999999988755421             1110                         


Q ss_pred             ecCCcEEEeeCCCCCcHHHHhcCCCCeEEeCceEEEEEecC-CeEEEEEccCCceeEEEeecEEEecCCCChHH
Q psy9141          87 GQNGKLREIPYDPVHNQVELEQYPDCNIYFQHKLINLDVNS-GNVTFYRTEDNSETKITDNQLIIGADGAYSGV  159 (379)
Q Consensus        87 ~~~g~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~-~~v~v~~~~~G~~~~~i~adlVV~AdG~~S~v  159 (379)
                                       +++.+.+++.+++++.++++.-++ .++++... .|++.+ +..|-|..+-|.....
T Consensus       186 -----------------~~l~~~~~i~~~~~~~i~ei~G~~v~~v~l~~~-~~~~~~-~~~~gvf~~iG~~p~~  240 (305)
T COG0492         186 -----------------ERLKKNVKIEVLTNTVVKEILGDDVEGVVLKNV-KGEEKE-LPVDGVFIAIGHLPNT  240 (305)
T ss_pred             -----------------HHHHhcCCeEEEeCCceeEEecCccceEEEEec-CCceEE-EEeceEEEecCCCCch
Confidence                             112222367888888888887665 44555533 255555 8888888888877654

>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent

Probab=93.25  E-value=0.13  Score=48.68  Aligned_cols=32  Identities=25%  Similarity=0.564  Sum_probs=29.4

Q ss_pred             cEEEECCChHHHHHHHHHHhCCC-cEEEEccCC
Q psy9141           8 SVVIVGGGLVGSLSACMFAKNQY-EVNLYEARE   39 (379)
Q Consensus         8 dVvIVGaGpaGl~~A~~La~~G~-~V~viE~~~   39 (379)
                      .|.|||+|..|...|..|+..|+ +|+++|...
T Consensus         3 KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~   35 (305)
T TIGR01763         3 KISVIGAGFVGATTAFRLAEKELADLVLLDVVE   35 (305)
T ss_pred             EEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence            69999999999999999999887 899999854

The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.

>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []

Probab=93.14  E-value=0.16  Score=42.30  Aligned_cols=32  Identities=38%  Similarity=0.554  Sum_probs=29.3

Q ss_pred             cEEEECC-ChHHHHHHHHHHhCCC--cEEEEccCC
Q psy9141           8 SVVIVGG-GLVGSLSACMFAKNQY--EVNLYEARE   39 (379)
Q Consensus         8 dVvIVGa-GpaGl~~A~~La~~G~--~V~viE~~~   39 (379)
                      +|.|||+ |.+|.++|+.|...++  ++.++|...
T Consensus         2 KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~   36 (141)
T PF00056_consen    2 KVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINE   36 (141)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSH
T ss_pred             EEEEECCCChHHHHHHHHHHhCCCCCceEEeccCc
Confidence            5999999 9999999999999976  799999875

L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....

>PRK06223 malate dehydrogenase; Reviewed

Probab=93.12  E-value=0.14  Score=48.52  Aligned_cols=33  Identities=30%  Similarity=0.536  Sum_probs=29.9

Q ss_pred             cEEEECCChHHHHHHHHHHhCCC-cEEEEccCCC
Q psy9141           8 SVVIVGGGLVGSLSACMFAKNQY-EVNLYEARED   40 (379)
Q Consensus         8 dVvIVGaGpaGl~~A~~La~~G~-~V~viE~~~~   40 (379)
                      +|+|||+|..|..+|..++..|+ +|.++|..+.
T Consensus         4 KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~   37 (307)
T PRK06223          4 KISIIGAGNVGATLAHLLALKELGDVVLFDIVEG   37 (307)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCc
Confidence            79999999999999999999876 9999998653

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=93.12  E-value=0.15  Score=45.20  Aligned_cols=37  Identities=22%  Similarity=0.275  Sum_probs=33.0

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHhCCC-cEEEEccCCC
Q psy9141           4 NSKKSVVIVGGGLVGSLSACMFAKNQY-EVNLYEARED   40 (379)
Q Consensus         4 m~~~dVvIVGaGpaGl~~A~~La~~G~-~V~viE~~~~   40 (379)
                      ..+..|+|||+|-.|..+|..|++.|. +++++|.+..
T Consensus        19 l~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~v   56 (202)
T TIGR02356        19 LLNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDHV   56 (202)
T ss_pred             hcCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCEE
Confidence            346789999999999999999999998 8999998753

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1

Probab=93.11  E-value=0.11  Score=44.29  Aligned_cols=32  Identities=34%  Similarity=0.503  Sum_probs=28.7

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEccCC
Q psy9141           8 SVVIVGGGLVGSLSACMFAKNQYEVNLYEARE   39 (379)
Q Consensus         8 dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~   39 (379)
                      +|.|||-|-.|...|..|.++|++|.++|+.+
T Consensus         3 ~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~   34 (163)
T PF03446_consen    3 KIGFIGLGNMGSAMARNLAKAGYEVTVYDRSP   34 (163)
T ss_dssp             EEEEE--SHHHHHHHHHHHHTTTEEEEEESSH
T ss_pred             EEEEEchHHHHHHHHHHHHhcCCeEEeeccch
Confidence            79999999999999999999999999999885

1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=93.08  E-value=0.17  Score=43.48  Aligned_cols=35  Identities=26%  Similarity=0.360  Sum_probs=30.9

Q ss_pred             CCCCcEEEECCCh-HHHHHHHHHHhCCCcEEEEccC
Q psy9141           4 NSKKSVVIVGGGL-VGSLSACMFAKNQYEVNLYEAR   38 (379)
Q Consensus         4 m~~~dVvIVGaGp-aGl~~A~~La~~G~~V~viE~~   38 (379)
                      ....+|+|||+|- +|..+|..|.+.|.+|+++.|.
T Consensus        42 l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~   77 (168)
T cd01080          42 LAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSK   77 (168)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECC
Confidence            3457899999995 6999999999999999999876

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>KOG1346|consensus

Probab=93.06  E-value=0.22  Score=48.38  Aligned_cols=96  Identities=25%  Similarity=0.325  Sum_probs=0.0

Q ss_pred             cEEEECCChHHHHHHHHHHhC--CCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeEE
Q psy9141           8 SVVIVGGGLVGSLSACMFAKN--QYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARMI   85 (379)
Q Consensus         8 dVvIVGaGpaGl~~A~~La~~--G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~~   85 (379)
                      .|.|||+|.-|.-+|+.|++.  ...+-|+---++....    +.-.--.|+.++++-+++                   
T Consensus       349 siTIiGnGflgSELacsl~rk~r~~g~eV~QvF~Ek~nm----~kiLPeyls~wt~ekir~-------------------  405 (659)
T KOG1346|consen  349 SITIIGNGFLGSELACSLKRKYRNEGVEVHQVFEEKYNM----EKILPEYLSQWTIEKIRK-------------------  405 (659)
T ss_pred             eEEEEcCcchhhhHHHHHHHhhhccCcEEEEeecccCCh----hhhhHHHHHHHHHHHHHh-------------------


Q ss_pred             EecCCcEEEeeCCCCCcHHHHhcCCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEEEecCC
Q psy9141          86 HGQNGKLREIPYDPVHNQVELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADG  154 (379)
Q Consensus        86 ~~~~g~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlVV~AdG  154 (379)
                                              .||.++-+..|.++......+.+.+. ||.+   ++.|+||.|.|
T Consensus       406 ------------------------~GV~V~pna~v~sv~~~~~nl~lkL~-dG~~---l~tD~vVvavG  446 (659)
T KOG1346|consen  406 ------------------------GGVDVRPNAKVESVRKCCKNLVLKLS-DGSE---LRTDLVVVAVG  446 (659)
T ss_pred             ------------------------cCceeccchhhhhhhhhccceEEEec-CCCe---eeeeeEEEEec

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=93.04  E-value=0.19  Score=41.44  Aligned_cols=35  Identities=17%  Similarity=0.259  Sum_probs=31.2

Q ss_pred             CCCcEEEECCChHHHHHHHHHHhCCCc-EEEEccCC
Q psy9141           5 SKKSVVIVGGGLVGSLSACMFAKNQYE-VNLYEARE   39 (379)
Q Consensus         5 ~~~dVvIVGaGpaGl~~A~~La~~G~~-V~viE~~~   39 (379)
                      +...|+|||+|-+|-+++..|+..|.+ |+|+-|..
T Consensus        11 ~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~   46 (135)
T PF01488_consen   11 KGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTP   46 (135)
T ss_dssp             TTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSH
T ss_pred             CCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCH
Confidence            456899999999999999999999987 99998763

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>PLN02353 probable UDP-glucose 6-dehydrogenase

Probab=92.96  E-value=0.12  Score=51.97  Aligned_cols=33  Identities=21%  Similarity=0.373  Sum_probs=29.7

Q ss_pred             cEEEECCChHHHHHHHHHHhC--CCcEEEEccCCC
Q psy9141           8 SVVIVGGGLVGSLSACMFAKN--QYEVNLYEARED   40 (379)
Q Consensus         8 dVvIVGaGpaGl~~A~~La~~--G~~V~viE~~~~   40 (379)
                      .|.|||.|.+|+.+|..|++.  |++|+.+|.++.
T Consensus         3 ~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~   37 (473)
T PLN02353          3 KICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVP   37 (473)
T ss_pred             EEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHH
Confidence            599999999999999999988  578999998764

>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional

Probab=92.92  E-value=1.2  Score=49.27  Aligned_cols=33  Identities=24%  Similarity=0.189  Sum_probs=28.9

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCc-EEEEccCC
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKNQYE-VNLYEARE   39 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~G~~-V~viE~~~   39 (379)
                      .+|+|||||.+|+-+|..+.+.|.+ |+++.++.
T Consensus       572 k~VvVIGgG~tA~D~A~~a~rlGa~~Vtiv~rr~  605 (1006)
T PRK12775        572 KSVVVIGAGNTAMDCLRVAKRLGAPTVRCVYRRS  605 (1006)
T ss_pred             CEEEEECCcHHHHHHHHHHHHcCCCEEEEEeecC
Confidence            5899999999999999999999984 77887664

>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []

Probab=92.83  E-value=0.28  Score=50.18  Aligned_cols=35  Identities=31%  Similarity=0.394  Sum_probs=29.8

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCC
Q psy9141           6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEARED   40 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~   40 (379)
                      ..+|+|||+|.+|+=.|..|++...+|.+.-|+..
T Consensus       183 gKrVlVVG~g~Sg~DIa~el~~~a~~v~~s~R~~~  217 (531)
T PF00743_consen  183 GKRVLVVGGGNSGADIAVELSRVAKKVYLSTRRGA  217 (531)
T ss_dssp             TSEEEEESSSHHHHHHHHHHTTTSCCEEEECC---
T ss_pred             CCEEEEEeCCHhHHHHHHHHHHhcCCeEEEEeccc
Confidence            45899999999999999999999999999888753

Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....

>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC

Probab=92.77  E-value=0.17  Score=46.39  Aligned_cols=35  Identities=29%  Similarity=0.367  Sum_probs=32.5

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCC
Q psy9141           6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEARED   40 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~   40 (379)
                      ...++|+|||+.+..+|..++..|++|+|+|.++.
T Consensus       100 ~~~L~IfGaG~va~~la~la~~lGf~V~v~D~R~~  134 (246)
T TIGR02964       100 APHVVLFGAGHVGRALVRALAPLPCRVTWVDSREA  134 (246)
T ss_pred             CCEEEEECCcHHHHHHHHHHhcCCCEEEEEeCCcc
Confidence            46899999999999999999999999999997765

Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.

>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional

Probab=92.72  E-value=0.18  Score=46.24  Aligned_cols=36  Identities=19%  Similarity=0.242  Sum_probs=32.2

Q ss_pred             CCCcEEEECCChHHHHHHHHHHhCCC-cEEEEccCCC
Q psy9141           5 SKKSVVIVGGGLVGSLSACMFAKNQY-EVNLYEARED   40 (379)
Q Consensus         5 ~~~dVvIVGaGpaGl~~A~~La~~G~-~V~viE~~~~   40 (379)
                      ++..|+|||+|-.|..+|..|++.|. +++|+|.+..
T Consensus        31 ~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~v   67 (245)
T PRK05690         31 KAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDTV   67 (245)
T ss_pred             cCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEE
Confidence            35689999999999999999999998 7999997753

>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated

Probab=92.69  E-value=0.15  Score=51.71  Aligned_cols=33  Identities=21%  Similarity=0.483  Sum_probs=31.0

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEccCCC
Q psy9141           8 SVVIVGGGLVGSLSACMFAKNQYEVNLYEARED   40 (379)
Q Consensus         8 dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~   40 (379)
                      .|.|||+|..|...|..|+++|++|+++|+++.
T Consensus         6 kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~~   38 (495)
T PRK07531          6 KAACIGGGVIGGGWAARFLLAGIDVAVFDPHPE   38 (495)
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence            699999999999999999999999999998753

>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB

Probab=92.66  E-value=0.18  Score=46.01  Aligned_cols=37  Identities=22%  Similarity=0.250  Sum_probs=32.5

Q ss_pred             CCCcEEEECCChHHHHHHHHHHhCCC-cEEEEccCCCC
Q psy9141           5 SKKSVVIVGGGLVGSLSACMFAKNQY-EVNLYEAREDI   41 (379)
Q Consensus         5 ~~~dVvIVGaGpaGl~~A~~La~~G~-~V~viE~~~~~   41 (379)
                      +...|+|||+|-.|..+|..|++.|. +++++|.+...
T Consensus        23 ~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ve   60 (240)
T TIGR02355        23 KASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTVS   60 (240)
T ss_pred             hCCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCccc
Confidence            45789999999999999999999998 79999977633

This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).

>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

Probab=92.66  E-value=0.17  Score=48.73  Aligned_cols=35  Identities=26%  Similarity=0.481  Sum_probs=32.2

Q ss_pred             CCCcEEEECCChHHHHHHHHHHhCCC-cEEEEccCC
Q psy9141           5 SKKSVVIVGGGLVGSLSACMFAKNQY-EVNLYEARE   39 (379)
Q Consensus         5 ~~~dVvIVGaGpaGl~~A~~La~~G~-~V~viE~~~   39 (379)
                      +...|+|||+|-.|..+|..|++.|. +++|+|.+.
T Consensus        23 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~   58 (339)
T PRK07688         23 REKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDY   58 (339)
T ss_pred             cCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCc
Confidence            45689999999999999999999999 899999875

>PRK07417 arogenate dehydrogenase; Reviewed

Probab=92.65  E-value=0.13  Score=48.10  Aligned_cols=32  Identities=28%  Similarity=0.227  Sum_probs=29.7

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEccCC
Q psy9141           8 SVVIVGGGLVGSLSACMFAKNQYEVNLYEARE   39 (379)
Q Consensus         8 dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~   39 (379)
                      .|.|||.|..|.++|..|++.|++|+++++++
T Consensus         2 ~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~   33 (279)
T PRK07417          2 KIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRE   33 (279)
T ss_pred             eEEEEeecHHHHHHHHHHHHCCCEEEEEECCH
Confidence            59999999999999999999999999998764

>PRK08644 thiamine biosynthesis protein ThiF; Provisional

Probab=92.61  E-value=0.18  Score=45.12  Aligned_cols=35  Identities=29%  Similarity=0.330  Sum_probs=31.9

Q ss_pred             CCCcEEEECCChHHHHHHHHHHhCCC-cEEEEccCC
Q psy9141           5 SKKSVVIVGGGLVGSLSACMFAKNQY-EVNLYEARE   39 (379)
Q Consensus         5 ~~~dVvIVGaGpaGl~~A~~La~~G~-~V~viE~~~   39 (379)
                      +...|+|||+|-.|..+|..|++.|. +++++|.+.
T Consensus        27 ~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D~   62 (212)
T PRK08644         27 KKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDV   62 (212)
T ss_pred             hCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence            45789999999999999999999999 599999875

>PRK07326 short chain dehydrogenase; Provisional

Probab=92.55  E-value=0.2  Score=45.01  Aligned_cols=39  Identities=23%  Similarity=0.271  Sum_probs=32.7

Q ss_pred             CCCCCCCcEEEECC-ChHHHHHHHHHHhCCCcEEEEccCC
Q psy9141           1 MKCNSKKSVVIVGG-GLVGSLSACMFAKNQYEVNLYEARE   39 (379)
Q Consensus         1 M~~m~~~dVvIVGa-GpaGl~~A~~La~~G~~V~viE~~~   39 (379)
                      |+.|...-|+|+|| |..|..+|..|+++|.+|+++.|++
T Consensus         1 m~~~~~~~ilItGatg~iG~~la~~l~~~g~~V~~~~r~~   40 (237)
T PRK07326          1 MMSLKGKVALITGGSKGIGFAIAEALLAEGYKVAITARDQ   40 (237)
T ss_pred             CCCCCCCEEEEECCCCcHHHHHHHHHHHCCCEEEEeeCCH
Confidence            44444567999985 9999999999999999999998764

>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=92.51  E-value=0.21  Score=49.90  Aligned_cols=37  Identities=27%  Similarity=0.328  Sum_probs=32.5

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCC
Q psy9141           4 NSKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEARED   40 (379)
Q Consensus         4 m~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~   40 (379)
                      +....|+|+|.|.+|+++|..|++.|.+|++.|..+.
T Consensus         3 ~~~~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~   39 (445)
T PRK04308          3 FQNKKILVAGLGGTGISMIAYLRKNGAEVAAYDAELK   39 (445)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence            3345799999999999999999999999999997653

>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=92.50  E-value=0.21  Score=47.42  Aligned_cols=35  Identities=29%  Similarity=0.432  Sum_probs=32.0

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCC
Q psy9141           6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEARED   40 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~   40 (379)
                      ..+|.|||+|-.|.++|..|++.|++|++++|+..
T Consensus         4 ~m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~~   38 (308)
T PRK14619          4 PKTIAILGAGAWGSTLAGLASANGHRVRVWSRRSG   38 (308)
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence            34799999999999999999999999999998764

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=92.46  E-value=0.18  Score=49.17  Aligned_cols=33  Identities=30%  Similarity=0.524  Sum_probs=31.0

Q ss_pred             cEEEECCChHHHHHHHHHHhCC-CcEEEEccCCC
Q psy9141           8 SVVIVGGGLVGSLSACMFAKNQ-YEVNLYEARED   40 (379)
Q Consensus         8 dVvIVGaGpaGl~~A~~La~~G-~~V~viE~~~~   40 (379)
                      +|+|||||-+|..+|..|+++| .+|+|.+|...
T Consensus         3 ~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~   36 (389)
T COG1748           3 KILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKE   36 (389)
T ss_pred             cEEEECCchhHHHHHHHHHhCCCceEEEEeCCHH
Confidence            7999999999999999999999 89999999853

>KOG2304|consensus

Probab=92.44  E-value=0.14  Score=45.64  Aligned_cols=36  Identities=42%  Similarity=0.440  Sum_probs=32.5

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCC
Q psy9141           6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDI   41 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~   41 (379)
                      ...|.|||||.-|.-.|...+..|++|.++|++...
T Consensus        11 ~~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~~a   46 (298)
T KOG2304|consen   11 IKNVAIVGAGQMGSGIAQVAATSGLNVWLVDANEDA   46 (298)
T ss_pred             ccceEEEcccccchhHHHHHHhcCCceEEecCCHHH
Confidence            358999999999999999999999999999988643

>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA

Probab=92.37  E-value=0.2  Score=45.31  Aligned_cols=35  Identities=26%  Similarity=0.363  Sum_probs=31.9

Q ss_pred             CCCcEEEECCChHHHHHHHHHHhCCC-cEEEEccCC
Q psy9141           5 SKKSVVIVGGGLVGSLSACMFAKNQY-EVNLYEARE   39 (379)
Q Consensus         5 ~~~dVvIVGaGpaGl~~A~~La~~G~-~V~viE~~~   39 (379)
                      ++..|+|||+|-.|...|..|++.|. +++|+|.+.
T Consensus        20 ~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~   55 (228)
T cd00757          20 KNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDV   55 (228)
T ss_pred             hCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence            45789999999999999999999998 799999775

Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=92.22  E-value=0.17  Score=48.89  Aligned_cols=32  Identities=25%  Similarity=0.326  Sum_probs=26.6

Q ss_pred             cEEEECCChHHHHHHHHHHhCCC-cEEEEccCC
Q psy9141           8 SVVIVGGGLVGSLSACMFAKNQY-EVNLYEARE   39 (379)
Q Consensus         8 dVvIVGaGpaGl~~A~~La~~G~-~V~viE~~~   39 (379)
                      .|+|+|+||.||+++..++..|. +|+++|+.+
T Consensus       171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~  203 (350)
T COG1063         171 TVVVVGAGPIGLLAIALAKLLGASVVIVVDRSP  203 (350)
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCceEEEeCCCH
Confidence            59999999999999888888886 566766554

>TIGR00936 ahcY adenosylhomocysteinase

Probab=92.15  E-value=0.22  Score=49.01  Aligned_cols=35  Identities=26%  Similarity=0.126  Sum_probs=32.1

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCC
Q psy9141           6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEARED   40 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~   40 (379)
                      ...|+|+|.|+.|..+|..|+..|.+|+++|.++.
T Consensus       195 Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~  229 (406)
T TIGR00936       195 GKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPI  229 (406)
T ss_pred             cCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChh
Confidence            45899999999999999999999999999998764

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>PRK07774 short chain dehydrogenase; Provisional

Probab=92.05  E-value=0.26  Score=44.61  Aligned_cols=39  Identities=21%  Similarity=0.260  Sum_probs=33.7

Q ss_pred             CCCCCCCcEEEECC-ChHHHHHHHHHHhCCCcEEEEccCC
Q psy9141           1 MKCNSKKSVVIVGG-GLVGSLSACMFAKNQYEVNLYEARE   39 (379)
Q Consensus         1 M~~m~~~dVvIVGa-GpaGl~~A~~La~~G~~V~viE~~~   39 (379)
                      |..++...++|.|| |-.|..+|..|++.|.+|++++|..
T Consensus         1 ~~~~~~k~vlItGasg~iG~~la~~l~~~g~~vi~~~r~~   40 (250)
T PRK07774          1 MGRFDDKVAIVTGAAGGIGQAYAEALAREGASVVVADINA   40 (250)
T ss_pred             CcccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence            55555567999998 9999999999999999999998764

>cd01487 E1_ThiF_like E1_ThiF_like

Probab=92.04  E-value=0.25  Score=42.78  Aligned_cols=32  Identities=28%  Similarity=0.367  Sum_probs=29.6

Q ss_pred             cEEEECCChHHHHHHHHHHhCCC-cEEEEccCC
Q psy9141           8 SVVIVGGGLVGSLSACMFAKNQY-EVNLYEARE   39 (379)
Q Consensus         8 dVvIVGaGpaGl~~A~~La~~G~-~V~viE~~~   39 (379)
                      .|+|||+|-.|...|..|++.|. +++++|.+.
T Consensus         1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~   33 (174)
T cd01487           1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDV   33 (174)
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence            48999999999999999999999 599999876

Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>KOG2495|consensus

Probab=92.02  E-value=0.068  Score=51.98  Aligned_cols=84  Identities=26%  Similarity=0.386  Sum_probs=0.0

Q ss_pred             cEEEECCChHHHHHHHHHHh--------------CCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHH
Q psy9141           8 SVVIVGGGLVGSLSACMFAK--------------NQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKL   73 (379)
Q Consensus         8 dVvIVGaGpaGl~~A~~La~--------------~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l   73 (379)
                      .++||||||+|.-+|.+|+.              .-++|+++|..+..-..  ++-+     +..-+...+.+.|+.-..
T Consensus       220 h~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vtLiEA~d~iL~m--Fdkr-----l~~yae~~f~~~~I~~~~  292 (491)
T KOG2495|consen  220 HFVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVTLIEAADHILNM--FDKR-----LVEYAENQFVRDGIDLDT  292 (491)
T ss_pred             EEEEECCCCcceeehHHHHHHHHHHHHHhhhcchhheEEEeeccchhHHHH--HHHH-----HHHHHHHHhhhccceeec


Q ss_pred             HhC--CCCceeeEEEecCCcEEEeeCC
Q psy9141          74 LAH--GIPMRARMIHGQNGKLREIPYD   98 (379)
Q Consensus        74 ~~~--~~~~~~~~~~~~~g~~~~~~~~   98 (379)
                      ...  ...-..+..-..+|....+||+
T Consensus       293 ~t~Vk~V~~~~I~~~~~~g~~~~iPYG  319 (491)
T KOG2495|consen  293 GTMVKKVTEKTIHAKTKDGEIEEIPYG  319 (491)
T ss_pred             ccEEEeecCcEEEEEcCCCceeeecce

>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC

Probab=91.98  E-value=0.2  Score=50.93  Aligned_cols=35  Identities=29%  Similarity=0.437  Sum_probs=32.2

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCC
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDI   41 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~   41 (379)
                      ..|.|||+|.-|...|..|+++|++|+++|+++..
T Consensus         6 ~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e~   40 (503)
T TIGR02279         6 VTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAEA   40 (503)
T ss_pred             cEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHH
Confidence            46999999999999999999999999999988644

This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.

>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=91.95  E-value=0.24  Score=49.49  Aligned_cols=35  Identities=20%  Similarity=0.285  Sum_probs=31.4

Q ss_pred             CCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCC
Q psy9141           5 SKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEARE   39 (379)
Q Consensus         5 ~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~   39 (379)
                      ....|+|+|+|.+|.++|..|++.|.+|++.|++.
T Consensus         4 ~~k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~   38 (447)
T PRK02472          4 QNKKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKP   38 (447)
T ss_pred             CCCEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence            34579999999999999999999999999999765

>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=91.86  E-value=0.37  Score=46.75  Aligned_cols=54  Identities=15%  Similarity=0.178  Sum_probs=43.0

Q ss_pred             CCCCeEEeCceEEEEEecCCe-EEEEEc--cCCceeEEEeecEEEecCCCChHHHHHh
Q psy9141         109 YPDCNIYFQHKLINLDVNSGN-VTFYRT--EDNSETKITDNQLIIGADGAYSGVRKCL  163 (379)
Q Consensus       109 ~~gv~i~~~~~v~~i~~~~~~-v~v~~~--~~G~~~~~i~adlVV~AdG~~S~vr~~l  163 (379)
                      .+++.++.+++|++++..+++ +.+.+.  ..|+..+ ++.|.||.|+|-+-.+..++
T Consensus       290 ~~~v~l~~~~ev~~~~~~G~g~~~l~~~~~~~~~~~t-~~~D~vIlATGY~~~~P~fL  346 (436)
T COG3486         290 KPDVRLLSLSEVQSVEPAGDGRYRLTLRHHETGELET-VETDAVILATGYRRAVPSFL  346 (436)
T ss_pred             CCCeeeccccceeeeecCCCceEEEEEeeccCCCceE-EEeeEEEEecccccCCchhh
Confidence            578999999999999998876 666543  1456566 99999999999986666665

>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins

Probab=91.83  E-value=0.29  Score=40.65  Aligned_cols=34  Identities=26%  Similarity=0.283  Sum_probs=30.5

Q ss_pred             cEEEECCChHHHHHHHHHHhCCC-cEEEEccCCCC
Q psy9141           8 SVVIVGGGLVGSLSACMFAKNQY-EVNLYEAREDI   41 (379)
Q Consensus         8 dVvIVGaGpaGl~~A~~La~~G~-~V~viE~~~~~   41 (379)
                      .|+|||+|-.|...|..|++.|. +++++|.+...
T Consensus         1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~v~   35 (143)
T cd01483           1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDTVE   35 (143)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCcC
Confidence            48999999999999999999998 79999977533

This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.

>PRK08328 hypothetical protein; Provisional

Probab=91.79  E-value=0.27  Score=44.58  Aligned_cols=35  Identities=29%  Similarity=0.354  Sum_probs=31.3

Q ss_pred             CCCcEEEECCChHHHHHHHHHHhCCC-cEEEEccCC
Q psy9141           5 SKKSVVIVGGGLVGSLSACMFAKNQY-EVNLYEARE   39 (379)
Q Consensus         5 ~~~dVvIVGaGpaGl~~A~~La~~G~-~V~viE~~~   39 (379)
                      ++..|+|||+|-.|..+|..|++.|. +++|+|.+.
T Consensus        26 ~~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~   61 (231)
T PRK08328         26 KKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQT   61 (231)
T ss_pred             hCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence            35689999999999999999999998 699998765

>PRK15057 UDP-glucose 6-dehydrogenase; Provisional

Probab=91.71  E-value=0.18  Score=49.42  Aligned_cols=33  Identities=24%  Similarity=0.316  Sum_probs=29.5

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEccCCCC
Q psy9141           8 SVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDI   41 (379)
Q Consensus         8 dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~   41 (379)
                      .|.|||.|..|+.+|..++. |++|+++|+++..
T Consensus         2 kI~VIGlGyvGl~~A~~lA~-G~~VigvD~d~~k   34 (388)
T PRK15057          2 KITISGTGYVGLSNGLLIAQ-NHEVVALDILPSR   34 (388)
T ss_pred             EEEEECCCHHHHHHHHHHHh-CCcEEEEECCHHH
Confidence            49999999999999988885 9999999988743

>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3

Probab=91.71  E-value=0.23  Score=42.20  Aligned_cols=35  Identities=29%  Similarity=0.210  Sum_probs=28.3

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCC
Q psy9141           6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEARED   40 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~   40 (379)
                      -..++|+|-|.+|-.+|..|+..|.+|+|.|.+|.
T Consensus        23 Gk~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DPi   57 (162)
T PF00670_consen   23 GKRVVVIGYGKVGKGIARALRGLGARVTVTEIDPI   57 (162)
T ss_dssp             TSEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSHH
T ss_pred             CCEEEEeCCCcccHHHHHHHhhCCCEEEEEECChH
Confidence            35799999999999999999999999999999873

3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....

>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases

Probab=91.70  E-value=0.24  Score=46.95  Aligned_cols=34  Identities=35%  Similarity=0.455  Sum_probs=30.4

Q ss_pred             cEEEECCChHHHHHHHHHHhCC--CcEEEEccCCCC
Q psy9141           8 SVVIVGGGLVGSLSACMFAKNQ--YEVNLYEAREDI   41 (379)
Q Consensus         8 dVvIVGaGpaGl~~A~~La~~G--~~V~viE~~~~~   41 (379)
                      .|+|||+|-+|.++|..|+..|  .+++++|++...
T Consensus         2 kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~~   37 (306)
T cd05291           2 KVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEEK   37 (306)
T ss_pred             EEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcch
Confidence            5999999999999999999999  479999997643

L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine

>PRK08703 short chain dehydrogenase; Provisional

Probab=91.70  E-value=0.29  Score=44.09  Aligned_cols=39  Identities=23%  Similarity=0.267  Sum_probs=34.3

Q ss_pred             CCCCCCCcEEEECC-ChHHHHHHHHHHhCCCcEEEEccCC
Q psy9141           1 MKCNSKKSVVIVGG-GLVGSLSACMFAKNQYEVNLYEARE   39 (379)
Q Consensus         1 M~~m~~~dVvIVGa-GpaGl~~A~~La~~G~~V~viE~~~   39 (379)
                      |.+|+...|+|.|| |-.|..+|..|+++|.+|+++.|+.
T Consensus         1 ~~~l~~k~vlItG~sggiG~~la~~l~~~g~~V~~~~r~~   40 (239)
T PRK08703          1 MATLSDKTILVTGASQGLGEQVAKAYAAAGATVILVARHQ   40 (239)
T ss_pred             CCCCCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCCh
Confidence            66676678999995 7889999999999999999999876

>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=91.61  E-value=0.35  Score=42.88  Aligned_cols=35  Identities=20%  Similarity=0.157  Sum_probs=31.4

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHhCCCcEEEEccC
Q psy9141           4 NSKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAR   38 (379)
Q Consensus         4 m~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~   38 (379)
                      ++...|+|+|.|-.|..+|..|.+.|.+|+++|++
T Consensus        26 l~gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~   60 (200)
T cd01075          26 LEGKTVAVQGLGKVGYKLAEHLLEEGAKLIVADIN   60 (200)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence            34567999999999999999999999999999865

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc

>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]

Probab=91.60  E-value=0.28  Score=46.93  Aligned_cols=38  Identities=18%  Similarity=0.225  Sum_probs=35.1

Q ss_pred             CCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCC
Q psy9141           5 SKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIR   42 (379)
Q Consensus         5 ~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~   42 (379)
                      ..|||+|+|-|+.=+.++..|+..|.+|+.||+++.-+
T Consensus         5 ~~yDvii~GTgl~esils~~Ls~~~k~VlhiD~Nd~YG   42 (434)
T COG5044           5 TLYDVIILGTGLRESILSAALSWDGKNVLHIDKNDYYG   42 (434)
T ss_pred             ccccEEEecccHHHHHHHHHhhhcCceEEEEeCCCccC
Confidence            36999999999999999999999999999999998554

>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins

Probab=91.57  E-value=0.23  Score=46.92  Aligned_cols=31  Identities=32%  Similarity=0.502  Sum_probs=28.7

Q ss_pred             EEEECCChHHHHHHHHHHhCCC-cEEEEccCC
Q psy9141           9 VVIVGGGLVGSLSACMFAKNQY-EVNLYEARE   39 (379)
Q Consensus         9 VvIVGaGpaGl~~A~~La~~G~-~V~viE~~~   39 (379)
                      |.|||+|-+|..+|..|+..|+ +|+++|.++
T Consensus         1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e   32 (300)
T cd01339           1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVE   32 (300)
T ss_pred             CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCC
Confidence            6899999999999999999887 999999885

Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas

>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases

Probab=91.54  E-value=0.3  Score=46.43  Aligned_cols=34  Identities=29%  Similarity=0.383  Sum_probs=30.6

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCC--cEEEEccCC
Q psy9141           6 KKSVVIVGGGLVGSLSACMFAKNQY--EVNLYEARE   39 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La~~G~--~V~viE~~~   39 (379)
                      +..|.|||+|-+|.++|+.|+..|+  ++.|+|...
T Consensus         3 ~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~   38 (312)
T cd05293           3 RNKVTVVGVGQVGMACAISILAKGLADELVLVDVVE   38 (312)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence            4589999999999999999999887  799999875

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK07067 sorbitol dehydrogenase; Provisional

Probab=91.47  E-value=0.33  Score=44.31  Aligned_cols=39  Identities=15%  Similarity=0.170  Sum_probs=32.9

Q ss_pred             CCCCCCCcEEEECC-ChHHHHHHHHHHhCCCcEEEEccCC
Q psy9141           1 MKCNSKKSVVIVGG-GLVGSLSACMFAKNQYEVNLYEARE   39 (379)
Q Consensus         1 M~~m~~~dVvIVGa-GpaGl~~A~~La~~G~~V~viE~~~   39 (379)
                      |+++....|+|.|| |-.|..+|..|+++|++|++++++.
T Consensus         1 ~~~l~~~~vlItGas~~iG~~ia~~l~~~G~~v~~~~r~~   40 (257)
T PRK07067          1 MMRLQGKVALLTGAASGIGEAVAERYLAEGARVVIADIKP   40 (257)
T ss_pred             CCCCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEcCCH
Confidence            55444567999996 8889999999999999999998765

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=91.44  E-value=0.3  Score=46.12  Aligned_cols=35  Identities=17%  Similarity=0.163  Sum_probs=32.2

Q ss_pred             CCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCC
Q psy9141           5 SKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEARE   39 (379)
Q Consensus         5 ~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~   39 (379)
                      ....|+|||.|.+|..+|..|++.|.+|+++++++
T Consensus       151 ~g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~  185 (296)
T PRK08306        151 HGSNVLVLGFGRTGMTLARTLKALGANVTVGARKS  185 (296)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            35689999999999999999999999999999885

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=91.40  E-value=0.3  Score=48.29  Aligned_cols=36  Identities=28%  Similarity=0.126  Sum_probs=32.5

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCC
Q psy9141           6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDI   41 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~   41 (379)
                      ...|+|+|.|..|..+|..|+..|.+|+++|+++..
T Consensus       212 Gk~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~r  247 (425)
T PRK05476        212 GKVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPIC  247 (425)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCchh
Confidence            457999999999999999999999999999988643

>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E

Probab=91.36  E-value=0.33  Score=44.04  Aligned_cols=36  Identities=28%  Similarity=0.313  Sum_probs=32.5

Q ss_pred             CCCcEEEECCChHHHHHHHHHHhCCC-cEEEEccCCC
Q psy9141           5 SKKSVVIVGGGLVGSLSACMFAKNQY-EVNLYEARED   40 (379)
Q Consensus         5 ~~~dVvIVGaGpaGl~~A~~La~~G~-~V~viE~~~~   40 (379)
                      ++..|+|||.|-.|..+|..|++.|. +++|+|.+..
T Consensus        10 ~~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~V   46 (231)
T cd00755          10 RNAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDVV   46 (231)
T ss_pred             hCCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEE
Confidence            45789999999999999999999998 8999997763

coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1

Probab=91.28  E-value=0.32  Score=43.03  Aligned_cols=35  Identities=11%  Similarity=0.198  Sum_probs=31.6

Q ss_pred             CCCcEEEECCChHHHHHHHHHHhCCC-cEEEEccCC
Q psy9141           5 SKKSVVIVGGGLVGSLSACMFAKNQY-EVNLYEARE   39 (379)
Q Consensus         5 ~~~dVvIVGaGpaGl~~A~~La~~G~-~V~viE~~~   39 (379)
                      +...|+|||+|..|+..|..|++.|. +++++|.+.
T Consensus        20 ~~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d~   55 (197)
T cd01492          20 RSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRT   55 (197)
T ss_pred             HhCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECCc
Confidence            35689999999999999999999999 699999775

Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.

>TIGR01915 npdG NADPH-dependent F420 reductase

Probab=91.27  E-value=0.29  Score=43.91  Aligned_cols=32  Identities=19%  Similarity=0.168  Sum_probs=29.1

Q ss_pred             cEEEEC-CChHHHHHHHHHHhCCCcEEEEccCC
Q psy9141           8 SVVIVG-GGLVGSLSACMFAKNQYEVNLYEARE   39 (379)
Q Consensus         8 dVvIVG-aGpaGl~~A~~La~~G~~V~viE~~~   39 (379)
                      +|.||| +|..|.++|..|++.|++|+++++++
T Consensus         2 kI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~   34 (219)
T TIGR01915         2 KIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDL   34 (219)
T ss_pred             EEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCH
Confidence            499997 79999999999999999999998764

This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.

>PRK08264 short chain dehydrogenase; Validated

Probab=91.24  E-value=0.38  Score=43.23  Aligned_cols=40  Identities=15%  Similarity=0.071  Sum_probs=33.7

Q ss_pred             CCCCCCCcEEEECC-ChHHHHHHHHHHhCCC-cEEEEccCCC
Q psy9141           1 MKCNSKKSVVIVGG-GLVGSLSACMFAKNQY-EVNLYEARED   40 (379)
Q Consensus         1 M~~m~~~dVvIVGa-GpaGl~~A~~La~~G~-~V~viE~~~~   40 (379)
                      |+++....|+|+|| |-.|..+|..|+++|. +|+++.|...
T Consensus         1 ~~~~~~~~vlItGgsg~iG~~la~~l~~~G~~~V~~~~r~~~   42 (238)
T PRK08264          1 MMDIKGKVVLVTGANRGIGRAFVEQLLARGAAKVYAAARDPE   42 (238)
T ss_pred             CCCCCCCEEEEECCCchHHHHHHHHHHHCCcccEEEEecChh
Confidence            44455567999995 9999999999999999 9999998754

>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional

Probab=91.18  E-value=0.28  Score=46.22  Aligned_cols=32  Identities=19%  Similarity=0.395  Sum_probs=30.2

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEccCC
Q psy9141           8 SVVIVGGGLVGSLSACMFAKNQYEVNLYEARE   39 (379)
Q Consensus         8 dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~   39 (379)
                      +|.|||.|..|...|..|+++|++|+++++++
T Consensus         3 ~Ig~IGlG~mG~~mA~~l~~~G~~V~v~d~~~   34 (296)
T PRK15461          3 AIAFIGLGQMGSPMASNLLKQGHQLQVFDVNP   34 (296)
T ss_pred             eEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCH
Confidence            69999999999999999999999999999875

>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=91.14  E-value=0.28  Score=48.64  Aligned_cols=34  Identities=24%  Similarity=0.221  Sum_probs=31.0

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCcEEEEccCC
Q psy9141           6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEARE   39 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~   39 (379)
                      ...|+|||-|-.|.++|..|.+.|.+|+++|++.
T Consensus         3 ~~~i~iiGlG~~G~slA~~l~~~G~~V~g~D~~~   36 (418)
T PRK00683          3 LQRVVVLGLGVTGKSIARFLAQKGVYVIGVDKSL   36 (418)
T ss_pred             CCeEEEEEECHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            3479999999999999999999999999999764

>PRK08265 short chain dehydrogenase; Provisional

Probab=91.08  E-value=0.38  Score=44.14  Aligned_cols=40  Identities=23%  Similarity=0.331  Sum_probs=34.4

Q ss_pred             CCCCCCCcEEEECC-ChHHHHHHHHHHhCCCcEEEEccCCC
Q psy9141           1 MKCNSKKSVVIVGG-GLVGSLSACMFAKNQYEVNLYEARED   40 (379)
Q Consensus         1 M~~m~~~dVvIVGa-GpaGl~~A~~La~~G~~V~viE~~~~   40 (379)
                      |.+++...++|.|| |-.|..+|..|++.|.+|++++|+..
T Consensus         1 m~~~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~   41 (261)
T PRK08265          1 MIGLAGKVAIVTGGATLIGAAVARALVAAGARVAIVDIDAD   41 (261)
T ss_pred             CCCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            66566678999996 88899999999999999999998753

>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit

Probab=91.07  E-value=0.29  Score=49.53  Aligned_cols=34  Identities=18%  Similarity=0.303  Sum_probs=31.4

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCcEEEEccCC
Q psy9141           6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEARE   39 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~   39 (379)
                      ...|+|+|+|++|++++..+...|.+|+++|.++
T Consensus       164 ~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~  197 (511)
T TIGR00561       164 PAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRP  197 (511)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            4689999999999999999999999999999875

In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=90.98  E-value=0.27  Score=50.71  Aligned_cols=34  Identities=24%  Similarity=0.285  Sum_probs=31.8

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEccCCC
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEARED   40 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~   40 (379)
                      -+|+|+|+|..|-.+|..|.++|++|+++|++++
T Consensus       418 ~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~~  451 (558)
T PRK10669        418 NHALLVGYGRVGSLLGEKLLAAGIPLVVIETSRT  451 (558)
T ss_pred             CCEEEECCChHHHHHHHHHHHCCCCEEEEECCHH
Confidence            5799999999999999999999999999998864

>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=90.98  E-value=0.23  Score=52.72  Aligned_cols=35  Identities=20%  Similarity=0.298  Sum_probs=31.8

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCC
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDI   41 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~   41 (379)
                      ..|.|||||..|...|..++..|++|+++|.++..
T Consensus       314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~  348 (715)
T PRK11730        314 KQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQKA  348 (715)
T ss_pred             ceEEEECCchhHHHHHHHHHhCCCeEEEEeCCHHH
Confidence            36999999999999999999999999999988643

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=90.87  E-value=2.2  Score=44.90  Aligned_cols=34  Identities=24%  Similarity=0.217  Sum_probs=29.7

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCC-cEEEEccCCC
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKNQY-EVNLYEARED   40 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~G~-~V~viE~~~~   40 (379)
                      .+|+|||+|..|+-+|..+.+.|. +|+++++++.
T Consensus       452 k~vvViGgG~~a~d~a~~~~~~Ga~~Vt~v~rr~~  486 (639)
T PRK12809        452 KRVVVLGGGDTTMDCLRTSIRLNAASVTCAYRRDE  486 (639)
T ss_pred             CeEEEECCcHHHHHHHHHHHHcCCCeEEEeeecCc
Confidence            579999999999999998888885 7999998753

>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein

Probab=90.85  E-value=0.39  Score=43.90  Aligned_cols=36  Identities=31%  Similarity=0.393  Sum_probs=30.8

Q ss_pred             CCCcEEEECCChHHHHHHHHHHhCC-----------CcEEEEccCCC
Q psy9141           5 SKKSVVIVGGGLVGSLSACMFAKNQ-----------YEVNLYEARED   40 (379)
Q Consensus         5 ~~~dVvIVGaGpaGl~~A~~La~~G-----------~~V~viE~~~~   40 (379)
                      ++.+|+|||+|-.|+.++-.|++.|           .+++|+|.+..
T Consensus        10 ~~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~V   56 (244)
T TIGR03736        10 RPVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDTV   56 (244)
T ss_pred             CCCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCEE
Confidence            4578999999999999999999974           38899997753

A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.

>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like

Probab=90.80  E-value=0.37  Score=42.61  Aligned_cols=35  Identities=20%  Similarity=0.325  Sum_probs=31.7

Q ss_pred             CCCcEEEECCChHHHHHHHHHHhCCC-cEEEEccCC
Q psy9141           5 SKKSVVIVGGGLVGSLSACMFAKNQY-EVNLYEARE   39 (379)
Q Consensus         5 ~~~dVvIVGaGpaGl~~A~~La~~G~-~V~viE~~~   39 (379)
                      ++..|+|||+|-.|...|-.|++.|. +++++|.+.
T Consensus        18 ~~s~VlviG~gglGsevak~L~~~GVg~i~lvD~d~   53 (198)
T cd01485          18 RSAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHRL   53 (198)
T ss_pred             hhCcEEEECCCHHHHHHHHHHHHcCCCEEEEEECCc
Confidence            35789999999999999999999998 599999775

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol

>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2

Probab=90.76  E-value=0.41  Score=43.31  Aligned_cols=36  Identities=17%  Similarity=0.261  Sum_probs=31.9

Q ss_pred             CCCcEEEECCChHHHHHHHHHHhCCCc---EEEEccCCC
Q psy9141           5 SKKSVVIVGGGLVGSLSACMFAKNQYE---VNLYEARED   40 (379)
Q Consensus         5 ~~~dVvIVGaGpaGl~~A~~La~~G~~---V~viE~~~~   40 (379)
                      ++..|+|+|||-+|...|..|.+.|.+   +.|++|+..
T Consensus        24 ~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~gl   62 (226)
T cd05311          24 EEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKGV   62 (226)
T ss_pred             cCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCCc
Confidence            456899999999999999999999985   999999853

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph

>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]

Probab=90.71  E-value=0.29  Score=46.45  Aligned_cols=32  Identities=31%  Similarity=0.509  Sum_probs=28.4

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEccCC
Q psy9141           8 SVVIVGGGLVGSLSACMFAKNQYEVNLYEARE   39 (379)
Q Consensus         8 dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~   39 (379)
                      .|.|+|+|-.|+..|+.|++.|.+|+++=|.+
T Consensus         2 kI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~   33 (307)
T COG1893           2 KILILGAGAIGSLLGARLAKAGHDVTLLVRSR   33 (307)
T ss_pred             eEEEECCcHHHHHHHHHHHhCCCeEEEEecHH
Confidence            59999999999999999999998788776654

>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB

Probab=90.69  E-value=0.26  Score=52.32  Aligned_cols=34  Identities=15%  Similarity=0.260  Sum_probs=31.6

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEccCCCC
Q psy9141           8 SVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDI   41 (379)
Q Consensus         8 dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~   41 (379)
                      .|.|||||..|...|..++.+|++|+++|.++..
T Consensus       315 ~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~  348 (714)
T TIGR02437       315 QAAVLGAGIMGGGIAYQSASKGTPIVMKDINQHS  348 (714)
T ss_pred             eEEEECCchHHHHHHHHHHhCCCeEEEEeCCHHH
Confidence            6999999999999999999999999999988643

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.

>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase

Probab=90.64  E-value=0.29  Score=45.92  Aligned_cols=32  Identities=25%  Similarity=0.384  Sum_probs=29.6

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEccCC
Q psy9141           8 SVVIVGGGLVGSLSACMFAKNQYEVNLYEARE   39 (379)
Q Consensus         8 dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~   39 (379)
                      +|.|||.|..|..+|..|++.|++|+++++++
T Consensus         1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~   32 (291)
T TIGR01505         1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGP   32 (291)
T ss_pred             CEEEEEecHHHHHHHHHHHHCCCeEEEEcCCH
Confidence            38999999999999999999999999998774

This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.

>PRK12549 shikimate 5-dehydrogenase; Reviewed

Probab=90.63  E-value=0.41  Score=44.92  Aligned_cols=34  Identities=18%  Similarity=0.289  Sum_probs=30.6

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCC-cEEEEccCC
Q psy9141           6 KKSVVIVGGGLVGSLSACMFAKNQY-EVNLYEARE   39 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La~~G~-~V~viE~~~   39 (379)
                      ...|+|||+|-+|.++|..|++.|. +|+|++|..
T Consensus       127 ~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~  161 (284)
T PRK12549        127 LERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDP  161 (284)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCH
Confidence            3579999999999999999999998 799998874

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=90.63  E-value=0.3  Score=48.81  Aligned_cols=33  Identities=27%  Similarity=0.475  Sum_probs=30.8

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEccCCC
Q psy9141           8 SVVIVGGGLVGSLSACMFAKNQYEVNLYEARED   40 (379)
Q Consensus         8 dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~   40 (379)
                      +|+|+|+|..|..+|..|.+.|++|+++|+++.
T Consensus         2 ~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~~   34 (453)
T PRK09496          2 KIIIVGAGQVGYTLAENLSGENNDVTVIDTDEE   34 (453)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCcEEEEECCHH
Confidence            599999999999999999999999999998764

>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=90.62  E-value=0.31  Score=49.44  Aligned_cols=32  Identities=13%  Similarity=0.295  Sum_probs=29.7

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEccC
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEAR   38 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~   38 (379)
                      ..|+|+|.|++|++++..|.+.|.+|++.|+.
T Consensus        13 ~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~   44 (488)
T PRK03369         13 APVLVAGAGVTGRAVLAALTRFGARPTVCDDD   44 (488)
T ss_pred             CeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence            47999999999999999999999999999954

>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase

Probab=90.58  E-value=0.47  Score=41.62  Aligned_cols=35  Identities=31%  Similarity=0.465  Sum_probs=30.8

Q ss_pred             CCCcEEEECC-ChHHHHHHHHHHhCCCcEEEEccCC
Q psy9141           5 SKKSVVIVGG-GLVGSLSACMFAKNQYEVNLYEARE   39 (379)
Q Consensus         5 ~~~dVvIVGa-GpaGl~~A~~La~~G~~V~viE~~~   39 (379)
                      +...++|+|| |.+|..+|..|++.|.+|+++.|+.
T Consensus        27 ~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~   62 (194)
T cd01078          27 KGKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDL   62 (194)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence            3468999997 9999999999999999999998763

Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo

>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins

Probab=90.58  E-value=0.2  Score=41.01  Aligned_cols=33  Identities=30%  Similarity=0.333  Sum_probs=28.3

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCcEEEEccC
Q psy9141           6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAR   38 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~   38 (379)
                      ..+|.|||+|-+|.++|..|.+.|+.|.-+..+
T Consensus        10 ~l~I~iIGaGrVG~~La~aL~~ag~~v~~v~sr   42 (127)
T PF10727_consen   10 RLKIGIIGAGRVGTALARALARAGHEVVGVYSR   42 (127)
T ss_dssp             --EEEEECTSCCCCHHHHHHHHTTSEEEEESSC
T ss_pred             ccEEEEECCCHHHHHHHHHHHHCCCeEEEEEeC
Confidence            568999999999999999999999998877644

This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=90.58  E-value=0.39  Score=45.10  Aligned_cols=34  Identities=21%  Similarity=0.166  Sum_probs=31.4

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCcEEEEccCC
Q psy9141           6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEARE   39 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~   39 (379)
                      ...|+|||.|-+|.++|..|+..|.+|++++|.+
T Consensus       151 gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~  184 (287)
T TIGR02853       151 GSNVMVLGFGRTGMTIARTFSALGARVFVGARSS  184 (287)
T ss_pred             CCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            4579999999999999999999999999999875

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>PRK06194 hypothetical protein; Provisional

Probab=90.53  E-value=0.44  Score=44.25  Aligned_cols=39  Identities=26%  Similarity=0.160  Sum_probs=32.8

Q ss_pred             CCCCCCCcEEEECC-ChHHHHHHHHHHhCCCcEEEEccCC
Q psy9141           1 MKCNSKKSVVIVGG-GLVGSLSACMFAKNQYEVNLYEARE   39 (379)
Q Consensus         1 M~~m~~~dVvIVGa-GpaGl~~A~~La~~G~~V~viE~~~   39 (379)
                      |..|+...|+|.|| |-.|..+|..|++.|.+|+++++..
T Consensus         1 m~~~~~k~vlVtGasggIG~~la~~l~~~G~~V~~~~r~~   40 (287)
T PRK06194          1 MKDFAGKVAVITGAASGFGLAFARIGAALGMKLVLADVQQ   40 (287)
T ss_pred             CcCCCCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEeCCh
Confidence            55555567999995 7899999999999999999998764

>PTZ00117 malate dehydrogenase; Provisional

Probab=90.52  E-value=0.43  Score=45.57  Aligned_cols=36  Identities=25%  Similarity=0.541  Sum_probs=31.5

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCC-CcEEEEccCCCC
Q psy9141           6 KKSVVIVGGGLVGSLSACMFAKNQ-YEVNLYEAREDI   41 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La~~G-~~V~viE~~~~~   41 (379)
                      ...|+|||||-+|..+|..|+..| .+++++|.+...
T Consensus         5 ~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~~~   41 (319)
T PTZ00117          5 RKKISMIGAGQIGSTVALLILQKNLGDVVLYDVIKGV   41 (319)
T ss_pred             CcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCCcc
Confidence            458999999999999999999999 589999987543

>PRK08223 hypothetical protein; Validated

Probab=90.49  E-value=0.39  Score=44.92  Aligned_cols=36  Identities=19%  Similarity=0.193  Sum_probs=32.2

Q ss_pred             CCCcEEEECCChHHHHHHHHHHhCCC-cEEEEccCCC
Q psy9141           5 SKKSVVIVGGGLVGSLSACMFAKNQY-EVNLYEARED   40 (379)
Q Consensus         5 ~~~dVvIVGaGpaGl~~A~~La~~G~-~V~viE~~~~   40 (379)
                      +...|+|||+|=.|..+|..|++.|+ +++|+|.+..
T Consensus        26 ~~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~V   62 (287)
T PRK08223         26 RNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDVF   62 (287)
T ss_pred             hcCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCCc
Confidence            45789999999999999999999998 7999997753

>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=90.48  E-value=0.39  Score=48.20  Aligned_cols=38  Identities=21%  Similarity=0.379  Sum_probs=31.5

Q ss_pred             CCCCCCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCC
Q psy9141           1 MKCNSKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEARE   39 (379)
Q Consensus         1 M~~m~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~   39 (379)
                      |.+.....|+|+|.|.+|.++|..|.+ |.+|++.|..+
T Consensus         1 ~~~~~~~~v~v~G~G~sG~a~~~~L~~-g~~v~v~D~~~   38 (454)
T PRK01368          1 MNSHTKQKIGVFGLGKTGISVYEELQN-KYDVIVYDDLK   38 (454)
T ss_pred             CcCCCCCEEEEEeecHHHHHHHHHHhC-CCEEEEECCCC
Confidence            443345689999999999999999995 99999999553

>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=90.44  E-value=0.35  Score=48.60  Aligned_cols=33  Identities=21%  Similarity=0.287  Sum_probs=30.9

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEccCC
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEARE   39 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~   39 (379)
                      ..|+|+|.|.+|.++|..|.+.|++|++.|+++
T Consensus        15 ~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~   47 (458)
T PRK01710         15 KKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKS   47 (458)
T ss_pred             CeEEEEcccHHHHHHHHHHHHCCCEEEEECCCC
Confidence            479999999999999999999999999999875

>PRK13984 putative oxidoreductase; Provisional

Probab=90.36  E-value=4.2  Score=42.38  Aligned_cols=30  Identities=33%  Similarity=0.425  Sum_probs=25.4

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCC------cEEEEc
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKNQY------EVNLYE   36 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~G~------~V~viE   36 (379)
                      .+|+|||||.+|+-+|..|++.|.      +|+++.
T Consensus       419 k~VvVIGGG~~g~e~A~~l~r~~~~~~g~~~V~v~~  454 (604)
T PRK13984        419 RSLVVIGGGNVAMDIARSMARLQKMEYGEVNVKVTS  454 (604)
T ss_pred             CcEEEECCchHHHHHHHHHHhccccccCceEEEEec
Confidence            589999999999999999998753      677764

>KOG2755|consensus

Probab=90.29  E-value=0.22  Score=45.48  Aligned_cols=34  Identities=29%  Similarity=0.451  Sum_probs=28.5

Q ss_pred             EEEECCChHHHHHHHHHHhC--CCcEEEEccCCCCC
Q psy9141           9 VVIVGGGLVGSLSACMFAKN--QYEVNLYEAREDIR   42 (379)
Q Consensus         9 VvIVGaGpaGl~~A~~La~~--G~~V~viE~~~~~~   42 (379)
                      -+|||||+||.+||-.|++.  ..+|+++-..+...
T Consensus         2 fivvgggiagvscaeqla~~~psa~illitass~vk   37 (334)
T KOG2755|consen    2 FIVVGGGIAGVSCAEQLAQLEPSAEILLITASSFVK   37 (334)
T ss_pred             eEEEcCccccccHHHHHHhhCCCCcEEEEeccHHHH
Confidence            58999999999999999986  56888888776543

>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional

Probab=90.28  E-value=0.5  Score=43.07  Aligned_cols=37  Identities=19%  Similarity=0.221  Sum_probs=32.4

Q ss_pred             CCCCCcEEEECC-ChHHHHHHHHHHhCCCcEEEEccCC
Q psy9141           3 CNSKKSVVIVGG-GLVGSLSACMFAKNQYEVNLYEARE   39 (379)
Q Consensus         3 ~m~~~dVvIVGa-GpaGl~~A~~La~~G~~V~viE~~~   39 (379)
                      +|+...++|.|| |-.|..+|..|+++|.+|+++.+.+
T Consensus         4 ~~~~~~vlItGasg~iG~~la~~l~~~G~~v~~~~r~~   41 (262)
T PRK13394          4 NLNGKTAVVTGAASGIGKEIALELARAGAAVAIADLNQ   41 (262)
T ss_pred             cCCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCCh
Confidence            455567999997 9999999999999999999998875

>PRK05600 thiamine biosynthesis protein ThiF; Validated

Probab=90.22  E-value=0.44  Score=46.43  Aligned_cols=36  Identities=17%  Similarity=0.293  Sum_probs=32.4

Q ss_pred             CCCcEEEECCChHHHHHHHHHHhCCC-cEEEEccCCC
Q psy9141           5 SKKSVVIVGGGLVGSLSACMFAKNQY-EVNLYEARED   40 (379)
Q Consensus         5 ~~~dVvIVGaGpaGl~~A~~La~~G~-~V~viE~~~~   40 (379)
                      +...|+|||+|-.|..+|..|++.|. +++++|.+..
T Consensus        40 ~~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D~v   76 (370)
T PRK05600         40 HNARVLVIGAGGLGCPAMQSLASAGVGTITLIDDDTV   76 (370)
T ss_pred             cCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCEE
Confidence            45689999999999999999999998 8999998753

>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins

Probab=90.20  E-value=0.71  Score=34.73  Aligned_cols=33  Identities=33%  Similarity=0.438  Sum_probs=29.8

Q ss_pred             CCCcEEEECCChHHHHHHHHHHhC-CCcEEEEcc
Q psy9141           5 SKKSVVIVGGGLVGSLSACMFAKN-QYEVNLYEA   37 (379)
Q Consensus         5 ~~~dVvIVGaGpaGl~~A~~La~~-G~~V~viE~   37 (379)
                      ...+++|+|+|-+|..+|..|.+. +.+|.++++
T Consensus        22 ~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r   55 (86)
T cd05191          22 KGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR   55 (86)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence            356899999999999999999998 678999998

Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al

>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1

Probab=90.17  E-value=0.27  Score=46.02  Aligned_cols=36  Identities=25%  Similarity=0.208  Sum_probs=32.6

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHhCCC-cEEEEccCC
Q psy9141           4 NSKKSVVIVGGGLVGSLSACMFAKNQY-EVNLYEARE   39 (379)
Q Consensus         4 m~~~dVvIVGaGpaGl~~A~~La~~G~-~V~viE~~~   39 (379)
                      +++..|+|||+|-.|..+|-.|+..|. +++|+|.+.
T Consensus        17 L~~s~VLIvG~gGLG~EiaKnLalaGVg~itI~D~d~   53 (286)
T cd01491          17 LQKSNVLISGLGGLGVEIAKNLILAGVKSVTLHDTKP   53 (286)
T ss_pred             HhcCcEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCc
Confidence            456799999999999999999999998 699999775

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	379
2xdo_A	398	TETX2 protein; tetracycline degradation, tigecycli	1e-41
2x3n_A	399	Probable FAD-dependent monooxygenase; oxidoreducta	9e-17
3rp8_A	407	Flavoprotein monooxygenase; FAD-binding protein, o	1e-14
2vou_A	397	2,6-dihydroxypyridine hydroxylase; oxidoreductase,	8e-14
3c96_A	410	Flavin-containing monooxygenase; FAD, oxidoreducta	2e-12
3alj_A	379	2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG;	4e-12
3fmw_A	570	Oxygenase; mithramycin, baeyer-villiger, flavin bi	8e-12
1k0i_A	394	P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h	2e-11
2r0c_A	549	REBC; flavin adenine dinucleotide, monooxygenase,	3e-11
2qa2_A	499	CABE, polyketide oxygenase CABE; FAD, angucycline,	5e-10
2qa1_A	500	PGAE, polyketide oxygenase PGAE; FAD, angucycline,	5e-10
3nix_A	421	Flavoprotein/dehydrogenase; structural genomics, P	6e-10
3ihg_A	535	RDME; flavoenzyme, anthracycline, polyketide biosy	2e-09
3e1t_A	512	Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro	1e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-07
3atr_A	453	Conserved archaeal protein; saturating double bond	4e-07
3i3l_A	591	Alkylhalidase CMLS; flavin-dependent halogenase, c	1e-06
3c4a_A	381	Probable tryptophan hydroxylase VIOD; alpha-beta p	2e-06
3cgv_A	397	Geranylgeranyl reductase related protein; NP_39399	3e-06
2dkh_A	639	3-hydroxybenzoate hydroxylase; flavoprotein, monoo	1e-05
3ihm_A	430	Styrene monooxygenase A; rossman fold, anti-parall	2e-05
1sez_A	504	Protoporphyrinogen oxidase, mitochondrial; FAD-bin	3e-05
3lov_A	475	Protoporphyrinogen oxidase; structural genomics, J	1e-04
1pn0_A	665	Phenol 2-monooxygenase; two dimers, TLS refinement	1e-04
2ivd_A	478	PPO, PPOX, protoporphyrinogen oxidase; porphyrin b	1e-04
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	5e-04
3nks_A	477	Protoporphyrinogen oxidase; FAD containing protein	6e-04

>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A* Length = 398

 Score =  149 bits (378), Expect = 1e-41
 Identities = 49/230 (21%), Positives = 86/230 (37%), Gaps = 26/230 (11%)

Query: 1   MKCNSKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRG 60
           M   S K+V I+GGG VG   A +  +N  +V++YE   D        G +++L     G
Sbjct: 21  MNLLSDKNVAIIGGGPVGLTMAKLLQQNGIDVSVYERDNDREARIF--GGTLDLH-KGSG 77

Query: 61  REALRRIGLEDKLLAHGIPMRARMIHGQNGKLREIPYDP--------VH----NQVELEQ 108
           +EA+++ GL        +PM   +   +   L      P        ++      + L  
Sbjct: 78  QEAMKKAGLLQTYYDLALPMGVNIADEKGNILSTKNVKPENRFDNPEINRNDLRAILLNS 137

Query: 109 YPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAYSGVRKCLMKQSM 168
             +  + +  KL+ L+      T       SET   D  L+I A+G  S VRK +    +
Sbjct: 138 LENDTVIWDRKLVMLEPGKKKWTLTFENKPSET--AD--LVILANGGMSKVRKFVTDTEV 193

Query: 169 FNYSQTYIEHGYMELCIPPSEDNE-------VWLYKNRLLSSVPEVRKRI 211
                  I+    +  I      +       +  ++  LL + P     +
Sbjct: 194 EETGTFNIQADIHQPEINCPGFFQLCNGNRLMASHQGNLLFANPNNNGAL 243

>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa} Length = 399

 Score = 80.0 bits (198), Expect = 9e-17
 Identities = 26/172 (15%), Positives = 62/172 (36%), Gaps = 25/172 (14%)

Query: 9   VVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIG 68
           V+I G G+ G++ A +  +  + V + E     R        +    L   G   +   G
Sbjct: 9   VLINGCGIGGAMLAYLLGRQGHRVVVVEQARRERA----INGAD--LLKPAGIRVVEAAG 62

Query: 69  LEDKLLAHGIPMRARMIHGQNGKL------REIPYDP----VHNQV-------ELEQYPD 111
           L  ++   G  +R  +    +G+L        +        +  +        +++    
Sbjct: 63  LLAEVTRRGGRVRHELEVYHDGELLRYFNYSSVDARGYFILMPCESLRRLVLEKIDGEAT 122

Query: 112 CNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAYSGVRKCL 163
             + F+ ++  +  +  +       ++        ++++GADG  S VR+ L
Sbjct: 123 VEMLFETRIEAVQRDERHAIDQVRLNDGRVLRP--RVVVGADGIASYVRRRL 172

>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A* Length = 407

 Score = 73.8 bits (182), Expect = 1e-14
 Identities = 32/172 (18%), Positives = 75/172 (43%), Gaps = 27/172 (15%)

Query: 9   VVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIG 68
            +++G G+ G  +A    ++  + ++YEA ++I+  G +      +++   G + +  +G
Sbjct: 26  AIVIGAGIGGLSAAVALKQSGIDCDVYEAVKEIKPVGAA------ISVWPNGVKCMAHLG 79

Query: 69  LEDKLLAHGIPMRA-RMIHGQNGK-LREIPYDP-----------VH----NQVELEQYPD 111
           + D +   G P+R       ++G+ + +    P           V      +  L+ +  
Sbjct: 80  MGDIMETFGGPLRRMAYRDFRSGENMTQFSLAPLIERTGSRPCPVSRAELQREMLDYWGR 139

Query: 112 CNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAYSGVRKCL 163
            ++ F  ++   + ++  VT     D S     D  L+I ADG++S +R  +
Sbjct: 140 DSVQFGKRVTRCEEDADGVTV-WFTDGSSAS-GD--LLIAADGSHSALRPWV 187

>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2 Length = 397

 Score = 71.2 bits (175), Expect = 8e-14
 Identities = 36/172 (20%), Positives = 66/172 (38%), Gaps = 22/172 (12%)

Query: 1   MKCNSKKSVVIVGGGLVGSLSACMFAKNQYEVNLYE-AREDIRNSGLSEGKSINLALSVR 59
           M   +   + +VGG + G  +A M      +V++YE + + +   G   G    + +   
Sbjct: 1   MS-PTTDRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQPLSGFGT--G----IVVQPE 53

Query: 60  GREALRRIGLEDKLLAHGIPMRA-RMIHGQNGK-LREIPYD------PVHNQVELEQYPD 111
               L   G+E    +  +P  +   +    G+ +  +P D              E +  
Sbjct: 54  LVHYLLEQGVELD--SISVPSSSMEYVDALTGERVGSVPADWRFTSYDSIYGGLYELFGP 111

Query: 112 CNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAYSGVRKCL 163
              +    L+ L  +S  V   R  D ++ +  +   +IGADG  S VRK L
Sbjct: 112 ERYHTSKCLVGLSQDSETVQM-RFSDGTKAE-AN--WVIGADGGASVVRKRL 159

>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A* Length = 410

 Score = 67.3 bits (165), Expect = 2e-12
 Identities = 42/181 (23%), Positives = 65/181 (35%), Gaps = 38/181 (20%)

Query: 9   VVIVGGGLVGSLS-ACMFAK-NQYEVNLYEAREDIRNSGLSE-GKSINLA-LSVRGREAL 64
           ++I G G+ G LS A    +    +V L E+  +IR       G  IN+   +V    AL
Sbjct: 7   ILIAGAGIGG-LSCALALHQAGIGKVTLLESSSEIR-----PLGVGINIQPAAVE---AL 57

Query: 65  RRIGLEDKLLAHGIPMRARMIHGQNGKL-----------REIPYDPVHNQVEL------- 106
             +GL   L A  IP        Q+G                P   +H + EL       
Sbjct: 58  AELGLGPALAATAIPTHELRYIDQSGATVWSEPRGVEAGNAYPQYSIH-RGELQMILLAA 116

Query: 107 --EQYPDCNIYFQHKLINLDVNSGNVT--FYRTEDNSETKITDNQLIIGADGAYSGVRKC 162
             E+     +     +  ++   G V           +    D  +++GADG +S VR  
Sbjct: 117 VRERLGQQAVRTGLGVERIEERDGRVLIGARDGHGKPQALGAD--VLVGADGIHSAVRAH 174

Query: 163 L 163
           L
Sbjct: 175 L 175

>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A* Length = 379

 Score = 65.8 bits (161), Expect = 4e-12
 Identities = 35/171 (20%), Positives = 61/171 (35%), Gaps = 26/171 (15%)

Query: 5   SKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLA-LSVRGREA 63
             +   + GGG  G  +A    +N ++V L+E   ++R    + G  I L    +R    
Sbjct: 10  KTRRAEVAGGGFAGLTAAIALKQNGWDVRLHEKSSELR----AFGAGIYLWHNGLR---V 62

Query: 64  LRRIGLEDKLLAHGIPMRARMIHGQNGKLREI-----PYDPVH----NQVELEQYPD--C 112
           L  +G  D +L              N  + +      P+  +     +   + +      
Sbjct: 63  LEGLGALDDVLQGSHTPPTYETWMHNKSVSKETFNGLPWRIMTRSHLHDALVNRARALGV 122

Query: 113 NIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAYSGVRKCL 163
           +I    + +  D   G +T        E    D  LI+GADG  S VR  +
Sbjct: 123 DISVNSEAVAAD-PVGRLTL----QTGEVLEAD--LIVGADGVGSKVRDSI 166

>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus} Length = 570

 Score = 65.5 bits (160), Expect = 8e-12
 Identities = 33/174 (18%), Positives = 50/174 (28%), Gaps = 31/174 (17%)

Query: 9   VVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIG 68
           VV+VGGG VG + A           + E   +    G         AL +R  E L   G
Sbjct: 52  VVVVGGGPVGLMLAGELRAGGVGALVLEKLVEP--VGHDRA----GALHIRTVETLDLRG 105

Query: 69  LEDKLLAHGIPMRARMIHGQNGKLREI-----PYDPVHN--QVELEQY-------PDCNI 114
           L D+ L      +     G   +  +       +       Q   E             I
Sbjct: 106 LLDRFLEGTQVAKGLPFAGIFTQGLDFGLVDTRHPYTGLVPQSRTEALLAEHAREAGAEI 165

Query: 115 YFQHKLINLDVNSGNVTF-YRTEDNSETKITDNQL----IIGADGAYSGVRKCL 163
              H++  L  ++  V                  +     +G DG  S VR+  
Sbjct: 166 PRGHEVTRLRQDAEAVEVTVAGPSGPYP------VRARYGVGCDGGRSTVRRLA 213

>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ... Length = 394

 Score = 63.5 bits (155), Expect = 2e-11
 Identities = 33/207 (15%), Positives = 63/207 (30%), Gaps = 22/207 (10%)

Query: 9   VVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIG 68
           V I+G G  G L   +  K   +  + E +      G          L     + LR  G
Sbjct: 5   VAIIGAGPSGLLLGQLLHKAGIDNVILERQTPDYVLGRIRA----GVLEQGMVDLLREAG 60

Query: 69  LEDKLLAHGIPMRARMIHGQNGKLREIPYDPVH--------NQVELEQ--------YPDC 112
           ++ ++   G+      I     + R I    +          Q E+ +            
Sbjct: 61  VDRRMARDGLVHEGVEIAFAGQRRR-IDLKRLSGGKTVTVYGQTEVTRDLMEAREACGAT 119

Query: 113 NIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAYSGVRKCLMKQSMFNYS 172
            +Y   ++   D+          E + E    D   I G DG +   R+ +  + +  + 
Sbjct: 120 TVYQAAEVRLHDLQGERPY-VTFERDGERLRLDCDYIAGCDGFHGISRQSIPAERLKVFE 178

Query: 173 QTYIEHGYMELCIPPSEDNEVWLYKNR 199
           + Y       L   P   +E+    + 
Sbjct: 179 RVYPFGWLGLLADTPPVSHELIYANHP 205

>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A* Length = 549

 Score = 63.6 bits (155), Expect = 3e-11
 Identities = 32/181 (17%), Positives = 53/181 (29%), Gaps = 33/181 (18%)

Query: 9   VVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIG 68
           V+I+GGG VG   A   A  Q    + E  +           +I      R  E  RR G
Sbjct: 29  VLILGGGPVGMALALDLAHRQVGHLVVEQTDGT--ITHPRVGTIG----PRSMELFRRWG 82

Query: 69  LEDKLLAHGIPMRARMIHGQNGKL---------------REIPYDPVHNQVELEQY---- 109
           +  ++   G P    +      ++               R  P           Q+    
Sbjct: 83  VAKQIRTAGWPGDHPLDAAWVTRVGGHEVYRIPLGTADTRATPEHTPEPDAICPQHWLAP 142

Query: 110 -----PDCNIYFQHKLINLDVNSGNVT--FYRTEDNSETKITDNQLIIGADGAYSGVRKC 162
                    +  + +L + +    +V          +   +    L +  DGA S  RK 
Sbjct: 143 LLAEAVGERLRTRSRLDSFEQRDDHVRATITDLRTGATRAVHARYL-VACDGASSPTRKA 201

Query: 163 L 163
           L
Sbjct: 202 L 202

>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces} Length = 499

 Score = 60.0 bits (146), Expect = 5e-10
 Identities = 32/171 (18%), Positives = 49/171 (28%), Gaps = 29/171 (16%)

Query: 9   VVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIG 68
           V++VG G  G + A        +V + E       +G S G    L  + R  E   + G
Sbjct: 15  VIVVGAGPAGLMLAGELRLGGVDVMVLEQLPQR--TGESRG----LGFTARTMEVFDQRG 68

Query: 69  LEDKLLAHGIPMR--ARMIHGQNGKLREIPYDPVHN--QVELEQY-------PDCNIYFQ 117
           +           +          G L    +  V    Q   E             +   
Sbjct: 69  ILPAFGPVETSTQGHFGGRPVDFGVLEG-AHYGVKAVPQSTTESVLEEWALGRGAELLRG 127

Query: 118 HKLINLDVNSGNVTF-YRTEDNSETKITDNQL----IIGADGAYSGVRKCL 163
           H +  L     +V       D   +      L    ++G DG  S VRK  
Sbjct: 128 HTVRALTDEGDHVVVEVEGPDGPRS------LTTRYVVGCDGGRSTVRKAA 172

>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces} Length = 500

 Score = 60.0 bits (146), Expect = 5e-10
 Identities = 34/170 (20%), Positives = 58/170 (34%), Gaps = 27/170 (15%)

Query: 9   VVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIG 68
           V++VG G  G + A        EV + E   +   +G S G    L  + R  E   + G
Sbjct: 14  VIVVGAGPAGMMLAGELRLAGVEVVVLERLVER--TGESRG----LGFTARTMEVFDQRG 67

Query: 69  LEDKLLAHGIPMRARMIHGQ-NGKLREIPYDPVHN--QVELEQY-------PDCNIYFQH 118
           +  +        +        +  + E  +       Q   E +          +I   H
Sbjct: 68  ILPRFGEVETSTQGHFGGLPIDFGVLEGAWQAAKTVPQSVTETHLEQWATGLGADIRRGH 127

Query: 119 KLINLDVNSGNVTF-YRTEDNSETKITDNQL----IIGADGAYSGVRKCL 163
           ++++L  +   VT   R  +   T      L    ++G DG  S VRK  
Sbjct: 128 EVLSLTDDGAGVTVEVRGPEGKHT------LRAAYLVGCDGGRSSVRKAA 171

>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii} Length = 421

 Score = 59.4 bits (144), Expect = 6e-10
 Identities = 31/208 (14%), Positives = 75/208 (36%), Gaps = 29/208 (13%)

Query: 9   VVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIG 68
           V+++G G  G+++A +  K+ ++V + E ++  R   + E       L  R  E L   G
Sbjct: 8   VLVIGAGPAGTVAASLVNKSGFKVKIVEKQKFPRFV-IGES------LLPRCMEHLDEAG 60

Query: 69  LEDKLLAHGIPMRARMIHGQNGKLREIPYDPVHN-------QV---ELEQY-------PD 111
             D + A G   +      +  ++ +  +    +       QV     ++          
Sbjct: 61  FLDAVKAQGFQQKFGAKFVRGKEIADFNFSDQFSNGWNWTWQVPRGNFDKTLADEAARQG 120

Query: 112 CNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAYSGVRKCL--MKQSMF 169
            ++ ++  + ++     +      + N   +  + + II A G    + +     K S F
Sbjct: 121 VDVEYEVGVTDIKFFGTDSVTTIEDINGNKREIEARFIIDASGYGRVIPRMFGLDKPSGF 180

Query: 170 NYSQTYIEHGYMELCI-PPSEDNEVWLY 196
              +T     +++    P + + E    
Sbjct: 181 ESRRTL--FTHIKDVKRPVAAEMEGNRI 206

>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens} Length = 535

 Score = 58.2 bits (141), Expect = 2e-09
 Identities = 39/189 (20%), Positives = 64/189 (33%), Gaps = 41/189 (21%)

Query: 9   VVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIG 68
           V++VG GL G  +A   A+    V + E R  +  S        N     R  E LR  G
Sbjct: 8   VLVVGAGLGGLSTAMFLARQGVRVLVVERRPGL--SPYPRAAGQN----PRTMELLRIGG 61

Query: 69  LEDKLLAHGIP--------------MRARMIHGQNGKLREIPYDPVH---------NQVE 105
           + D+++                   +R  ++   +    ++               +Q +
Sbjct: 62  VADEVVRADDIRGTQGDFVIRLAESVRGEILRTVSESFDDMVAATEPCTPAGWAMLSQDK 121

Query: 106 LEQY-------PDCNIYFQHKLINL----DVNSGNVTFYRTEDNSETKITDNQLIIGADG 154
           LE             I F  +L++     D     VT      + E  +    L +GADG
Sbjct: 122 LEPILLAQARKHGGAIRFGTRLLSFRQHDDDAGAGVTARLAGPDGEYDLRAGYL-VGADG 180

Query: 155 AYSGVRKCL 163
             S VR+ L
Sbjct: 181 NRSLVRESL 189

>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus} Length = 512

 Score = 55.7 bits (134), Expect = 1e-08
 Identities = 35/211 (16%), Positives = 68/211 (32%), Gaps = 32/211 (15%)

Query: 9   VVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIG 68
           ++++GGG  GS  A   A   + V L E     R+  + E       L          +G
Sbjct: 10  LIVIGGGPGGSTLASFVAMRGHRVLLLEREAFPRHQ-IGES-----LLPATVHGICAMLG 63

Query: 69  LEDKLLAHGIPM--RARMIHGQNGKLREIPYDPVHN-------QV---ELEQY------- 109
           L D++   G P+        G+  +     +    +       QV     +         
Sbjct: 64  LTDEMKRAGFPIKRGGTFRWGKEPEPWTFGFTRHPDDPYGFAYQVERARFDDMLLRNSER 123

Query: 110 PDCNIYFQHKLINLDVNSGNVTF--YRTEDNSETKITDNQLIIGADGAYSGVRKCL--MK 165
              ++  +H++I++           YR  +  E      + I+ A G  + V + +    
Sbjct: 124 KGVDVRERHEVIDVLFEGERAVGVRYRNTEGVELMAHA-RFIVDASGNRTRVSQAVGERV 182

Query: 166 QSMFNYSQTYIEHGYMELCIPPSEDNEVWLY 196
            S F  +     +GY E         +  + 
Sbjct: 183 YSRFFQNVAL--YGYFENGKRLPAPRQGNIL 211

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 54.9 bits (131), Expect = 3e-08
 Identities = 53/340 (15%), Positives = 106/340 (31%), Gaps = 108/340 (31%)

Query: 101 HNQVELE------QYPDCNIYFQHKLI-NLDVNSGNVTFYRTEDNSETKITDNQL--IIG 151
           H+ ++ E      QY D    F+   + N D           +D  ++ ++  ++  II 
Sbjct: 4   HHHMDFETGEHQYQYKDILSVFEDAFVDNFDCKD-------VQDMPKSILSKEEIDHIIM 56

Query: 152 ADGAYSGVRK---CLMKQ-----SMF-------NYSQTYIEHGYMELCIPPSEDNEVWL- 195
           +  A SG  +    L+ +       F       NY   ++          PS    +++ 
Sbjct: 57  SKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYK--FLMSPIKTEQRQPSMMTRMYIE 114

Query: 196 YKNRLLSSVPEVRKR--------ISLRAQSLKSL----------MNFPRADQGG------ 231
            ++RL +      K         + LR Q+L  L          +        G      
Sbjct: 115 QRDRLYNDNQVFAKYNVSRLQPYLKLR-QALLELRPAKNVLIDGV-------LGSGKTWV 166

Query: 232 -------DKRDCLLHEG-----------TSRILVPNMRLSNHLDRDQPCKPLLDFKNPIK 273
                   K  C +                 +L    +L   +  D       D  + IK
Sbjct: 167 ALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQI--DPNWTSRSDHSSNIK 224

Query: 274 IQSHAVVNEF--------YKQESLIVASLCQEKIEKMFDN------TSTYKSRHINFI-- 317
           ++ H++  E         Y+   L++ ++   K    F+       T+ +K    +F+  
Sbjct: 225 LRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQV-TDFLSA 283

Query: 318 HRSYHLYTVDIGVHKVTESSILNLLLRGMKKNVPMPNKKL 357
             + H+         +T   + +LLL    K +    + L
Sbjct: 284 ATTTHISLDHH-SMTLTPDEVKSLLL----KYLDCRPQDL 318

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 51.8 bits (123), Expect = 2e-07
 Identities = 72/468 (15%), Positives = 125/468 (26%), Gaps = 173/468 (36%)

Query: 25  FAKNQYEVNLYEAREDIRNSGLSE---------------GKSINLALSVRGREALRRIGL 69
           FAK  Y V+  +    +R   L E               GK+  +AL     +      +
Sbjct: 126 FAK--YNVSRLQPYLKLRQ-ALLELRPAKNVLIDGVLGSGKTW-VAL-----DVCLSYKV 176

Query: 70  EDKL------------------------LAHGI--PMRARMIHGQNGKLR-EIPYDPVHN 102
           + K+                        L + I     +R  H  N KLR       +  
Sbjct: 177 QCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRR 236

Query: 103 QVELEQYPDCNIYFQHKLINLD-VNSGNV--TFYRTEDNSETKI---TDNQLIIGADGAY 156
            ++ + Y +C       L+ L  V +      F     N   KI   T  + +     A 
Sbjct: 237 LLKSKPYENC-------LLVLLNVQNAKAWNAF-----NLSCKILLTTRFKQVTDFLSAA 284

Query: 157 SGVRKCLMKQSM-FNYSQT------YIEHGYMELCIPP-----------------SEDNE 192
           +     L   SM     +       Y++    +L  P                   +   
Sbjct: 285 TTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDL--PREVLTTNPRRLSIIAESIRDGLA 342

Query: 193 VW-LYKNRLLSSVPEVRKRISLRAQS-------LKSLMNFPRAD------------QGGD 232
            W  +K+     +  + +  SL              L  FP                   
Sbjct: 343 TWDNWKHVNCDKLTTIIE-SSLNVLEPAEYRKMFDRLSVFP-PSAHIPTILLSLIWFDVI 400

Query: 233 KRDC--LLHEGTSRILV----PNMRLSNH-LDRDQPCKPLLDFKNPIKIQSHAVVNEFYK 285
           K D   ++++     LV        +S   +  +      L  K   +   H  + + Y 
Sbjct: 401 KSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLE------LKVKLENEYALHRSIVDHYN 454

Query: 286 QESLIVASLCQEKIEKMF-DNTSTYKSRHINFIHRSYHLYTVD----------------- 327
               I  +   + +   + D    Y   HI      +HL  ++                 
Sbjct: 455 ----IPKTFDSDDLIPPYLDQ---YFYSHI-----GHHLKNIEHPERMTLFRMVFLDFRF 502

Query: 328 -------IGVHKVTESSILNLL--LRGMKK----NVPMPNKKLDMILE 362
                           SILN L  L+  K     N P   + ++ IL+
Sbjct: 503 LEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILD 550

>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A* Length = 453

 Score = 50.6 bits (121), Expect = 4e-07
 Identities = 25/206 (12%), Positives = 62/206 (30%), Gaps = 26/206 (12%)

Query: 9   VVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIG 68
           V+I+GGG  GS +A   ++   ++ L +++   R       K    A+S    + L    
Sbjct: 9   VLIIGGGFAGSSAAYQLSRRGLKILLVDSKPWNRIGD----KPCGDAVSKAHFDKLGMPY 64

Query: 69  LEDKLLAHGIPMRARMIHGQNGKLREIPYDPVHNQVELEQYPDC----------NIYFQH 118
            + + L + I    ++       +  +  +    ++    Y              I+   
Sbjct: 65  PKGEELENKI-NGIKLYSPDMQTVWTVNGEGF--ELNAPLYNQRVLKEAQDRGVEIWDLT 121

Query: 119 KLINLDVNSGN---VTFYRTEDNSETKITDNQLIIGADGAYSGVRKCLMKQSMFNYSQTY 175
             +      G       +    N E  +    +++ A G     R  L  +         
Sbjct: 122 TAMKPIFEDGYVKGAVLFNRRTNEELTVYSK-VVVEATGYSRSFRSKLPPELPITEDLDD 180

Query: 176 IE-----HGYMELCIPPSEDNEVWLY 196
            +        +       + + + ++
Sbjct: 181 KDADVAYREVLLTKEDIEDHDYLRIF 206

>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae} Length = 591

 Score = 49.2 bits (117), Expect = 1e-06
 Identities = 32/180 (17%), Positives = 66/180 (36%), Gaps = 36/180 (20%)

Query: 9   VVIVGGGLVGSLSACMFAKNQYEVNLYEA----REDIRNSGLSEGKSINLALSVRGREAL 64
           V I+GGG  GS++     K  ++V +YE     R  +      E       L       L
Sbjct: 26  VAIIGGGPAGSVAGLTLHKLGHDVTIYERSAFPRYRV-----GES------LLPGTMSIL 74

Query: 65  RRIGLEDKLLAHGIPM--RARMIHGQNGK--------LREIPYDPVH----NQVELEQY- 109
            R+GL++K+ A        A  + GQ+           +  P+   H     + E ++  
Sbjct: 75  NRLGLQEKIDAQNYVKKPSATFLWGQDQAPWTFSFAAPKVAPWVFDHAVQVKREEFDKLL 134

Query: 110 ------PDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAYSGVRKCL 163
                     ++ +  + ++D++  +          E+   ++  +I A G+   + + L
Sbjct: 135 LDEARSRGITVHEETPVTDVDLSDPDRVVLTVRRGGESVTVESDFVIDAGGSGGPISRKL 194

>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472} Length = 381

 Score = 48.2 bits (114), Expect = 2e-06
 Identities = 26/198 (13%), Positives = 59/198 (29%), Gaps = 31/198 (15%)

Query: 9   VVIVGGGLVGSLSACMFAKNQ--YEVNLYEAREDIRNSG----LSEGKSINLALSVRGRE 62
           ++++G G  G + A    + +  + +++ E  ++    G    L      + A  +   +
Sbjct: 3   ILVIGAGPAGLVFASQLKQARPLWAIDIVEKNDEQEVLGWGVVLPGRPGQHPANPLSYLD 62

Query: 63  ALRRIGL----EDKLLAHGIPMRARMIHGQNGKLREIPYDPVHNQVELEQYPDCNIYFQH 118
           A  R+      + KL+ H  P          G  R      + ++          I F+ 
Sbjct: 63  APERLNPQFLEDFKLVHHNEPSLMSTGVLLCGVERRGLVHALRDKCR---SQGIAIRFES 119

Query: 119 KLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAYSGVRKCLMKQSMFNYSQTYIEH 178
                             ++ E  + D  L++ A+G                    Y  +
Sbjct: 120 ---------------PLLEHGELPLADYDLVVLANGVNHKTAHFT---EALVPQVDYGRN 161

Query: 179 GYMELCIPPSEDNEVWLY 196
            Y+        D    ++
Sbjct: 162 KYIWYGTSQLFDQMNLVF 179

>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A* Length = 639

 Score = 46.4 bits (110), Expect = 1e-05
 Identities = 27/189 (14%), Positives = 56/189 (29%), Gaps = 40/189 (21%)

Query: 9   VVIVGGGLVGSLSACMFAKNQ-YEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRI 67
           V+IVG G  G   A   A        + E +E      +  G++    ++ R  E     
Sbjct: 35  VLIVGCGPAGLTLAAQLAAFPDIRTCIVEQKEGP----MELGQAD--GIACRTMEMFEAF 88

Query: 68  GLEDKLLAHGIPMRARMIHGQNGK-----LREIPYDPVH-----------NQVELEQY-- 109
              D +L     +        +        R                   NQ  +  +  
Sbjct: 89  EFADSILKEACWINDVTFWKPDPGQPGRIARHGRVQDTEDGLSEFPHVILNQARVHDHYL 148

Query: 110 -------PDCNIYFQHKLINLDVNSGNVTF--------YRTEDNSETKITDNQLIIGADG 154
                       ++  +++++ V+ G   +               + +    + ++G DG
Sbjct: 149 ERMRNSPSRLEPHYARRVLDVKVDHGAADYPVTVTLERCDAAHAGQIETVQARYVVGCDG 208

Query: 155 AYSGVRKCL 163
           A S VR+ +
Sbjct: 209 ARSNVRRAI 217

>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida} Length = 430

 Score = 45.3 bits (106), Expect = 2e-05
 Identities = 14/82 (17%), Positives = 25/82 (30%), Gaps = 2/82 (2%)

Query: 2  KCNSKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAR--EDIRNSGLSEGKSINLALSVR 59
            + KK + IVG G  G        ++  +V +Y  R  ++     L    + N     R
Sbjct: 18 GSHMKKRIGIVGAGTAGLHLGLFLRQHDVDVTVYTDRKPDEYSGLRLLNTVAHNAVTVQR 77

Query: 60 GREALRRIGLEDKLLAHGIPMR 81
                     ++    G    
Sbjct: 78 EVALDVNEWPSEEFGYFGHYYY 99

>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5 Length = 504

 Score = 45.1 bits (106), Expect = 3e-05
 Identities = 23/108 (21%), Positives = 44/108 (40%), Gaps = 15/108 (13%)

Query: 4   NSKKSVVIVGGGLVGSLSACMF-AKNQYEVNLYEARED----IRNSGLSEGKSINL---A 55
           +S K V ++G G+ G L+A      +   V ++EA       +R S   +G   +     
Sbjct: 11  SSAKRVAVIGAGVSG-LAAAYKLKIHGLNVTVFEAEGKAGGKLR-SVSQDGLIWDEGANT 68

Query: 56  LSVRGREA---LRRIGLEDKLLAHGIPMRARMIHGQNGKLREIPYDPV 100
           ++    +    +  +GL +K     +    R I   NG    +P +P+
Sbjct: 69  MTESEGDVTFLIDSLGLREKQQFP-LSQNKRYIAR-NGTPVLLPSNPI 114

>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum} Length = 475

 Score = 43.1 bits (101), Expect = 1e-04
 Identities = 30/109 (27%), Positives = 43/109 (39%), Gaps = 18/109 (16%)

Query: 5   SKKSVVIVGGGLVGSLSACMF---AKNQYEVNLYEARED----IRNSGLSEGKSINL--- 54
           S K +VIVGGG+ G L+A  +   A     + L EA E     +  +   +G +I     
Sbjct: 3   SSKRLVIVGGGITG-LAAAYYAERAFPDLNITLLEAGERLGGKVA-TYREDGFTIERGPD 60

Query: 55  ALSVRGREA---LRRIGLEDKLLAHGIPMRARMIHGQNGKLREIPYDPV 100
           +   R       +  IGL +KL+          I    G L  IP   V
Sbjct: 61  SYVARKHILTDLIEAIGLGEKLVR--NNTSQAFILD-TGGLHPIPKGAV 106

>1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A* Length = 665

 Score = 43.1 bits (101), Expect = 1e-04
 Identities = 21/114 (18%), Positives = 45/114 (39%), Gaps = 11/114 (9%)

Query: 9   VVIVGGGLVGSLSACMFAKNQYEVN-----LYEAREDIRNSGLSEGKSINLALSVRGREA 63
           V+IVG G  G ++A + ++   +       + + R       +  G++    L  R  E+
Sbjct: 11  VLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTK----VYNGQA--DGLQCRTLES 64

Query: 64  LRRIGLEDKLLAHGIPMRARMIHGQNGKLREIPYDPVHNQVELEQYPDCNIYFQ 117
           L+ +GL DK+L+    M    ++  +        D + + +         +  Q
Sbjct: 65  LKNLGLADKILSEANDMSTIALYNPDENGHIRRTDRIPDTLPGISRYHQVVLHQ 118

>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A* Length = 478

 Score = 42.7 bits (100), Expect = 1e-04
 Identities = 20/108 (18%), Positives = 39/108 (36%), Gaps = 14/108 (12%)

Query: 4   NSKKSVVIVGGGLVGSLSACMF-AKNQYEVNLYEARED----IRNSGLSEGKSINL---A 55
            +  +V +VGGG+ G L+          +  L E+       +  +    G  +     +
Sbjct: 14  TTGMNVAVVGGGISG-LAVAHHLRSRGTDAVLLESSARLGGAVG-THALAGYLVEQGPNS 71

Query: 56  LSVRGREAL---RRIGLEDKLLAHGIPMRARMIHGQNGKLREIPYDPV 100
              R          + LE ++ A     + R ++   G+LR +P  P 
Sbjct: 72  FLDREPATRALAAALNLEGRIRAADPAAKRRYVYT-RGRLRSVPASPP 118

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 Length = 671

 Score = 41.2 bits (97), Expect = 5e-04
 Identities = 18/82 (21%), Positives = 33/82 (40%), Gaps = 9/82 (10%)

Query: 2   KCNSKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGR 61
               KK++ +VG G  G   A   A   ++V L++A  +I       G   N+A  + G+
Sbjct: 369 PAVQKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEI-------GGQFNIAKQIPGK 421

Query: 62  EALRRIG--LEDKLLAHGIPMR 81
           E            +   G+ ++
Sbjct: 422 EEFYETLRYYRRMIEVTGVTLK 443

>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens} Length = 477

 Score = 40.8 bits (95), Expect = 6e-04
 Identities = 24/109 (22%), Positives = 38/109 (34%), Gaps = 19/109 (17%)

Query: 6   KKSVVIVGGGLVGSLSACMFAKNQ---YEVNLYEARED----IRNSGLSEGKSIN----- 53
            ++VV++GGG+ G L+A           +V L E+ E     IR+     G         
Sbjct: 2   GRTVVVLGGGISG-LAASYHLSRAPCPPKVVLVESSERLGGWIRSVRGPNGAIFELGPRG 60

Query: 54  -LALSVRGREAL---RRIGLEDKLLA--HGIPMRARMIHGQNGKLREIP 96
                  G   L     +GL+ ++L      P          G L  +P
Sbjct: 61  IRPAGALGARTLLLVSELGLDSEVLPVRGDHPAAQNRFLYVGGALHALP 109

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	379
3rp8_A	407	Flavoprotein monooxygenase; FAD-binding protein, o	99.97
3fmw_A	570	Oxygenase; mithramycin, baeyer-villiger, flavin bi	99.97
4hb9_A	412	Similarities with probable monooxygenase; flavin,	99.96
2qa2_A	499	CABE, polyketide oxygenase CABE; FAD, angucycline,	99.96
2r0c_A	549	REBC; flavin adenine dinucleotide, monooxygenase,	99.96
2qa1_A	500	PGAE, polyketide oxygenase PGAE; FAD, angucycline,	99.96
1pn0_A	665	Phenol 2-monooxygenase; two dimers, TLS refinement	99.96
2vou_A	397	2,6-dihydroxypyridine hydroxylase; oxidoreductase,	99.96
3ihg_A	535	RDME; flavoenzyme, anthracycline, polyketide biosy	99.96
3c96_A	410	Flavin-containing monooxygenase; FAD, oxidoreducta	99.96
2x3n_A	399	Probable FAD-dependent monooxygenase; oxidoreducta	99.95
3alj_A	379	2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG;	99.95
2xdo_A	398	TETX2 protein; tetracycline degradation, tigecycli	99.95
2dkh_A	639	3-hydroxybenzoate hydroxylase; flavoprotein, monoo	99.95
1k0i_A	394	P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h	99.95
3oz2_A	397	Digeranylgeranylglycerophospholipid reductase; str	99.94
3nix_A	421	Flavoprotein/dehydrogenase; structural genomics, P	99.93
3cgv_A	397	Geranylgeranyl reductase related protein; NP_39399	99.92
3e1t_A	512	Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro	99.91
3i3l_A	591	Alkylhalidase CMLS; flavin-dependent halogenase, c	99.91
3atr_A	453	Conserved archaeal protein; saturating double bond	99.9
2pyx_A	526	Tryptophan halogenase; structural genomics, JOI fo	99.87
3c4a_A	381	Probable tryptophan hydroxylase VIOD; alpha-beta p	99.86
2e4g_A	550	Tryptophan halogenase; flavin-binding, rebeccamyci	99.86
2aqj_A	538	Tryptophan halogenase, pRNA; flavin-dependent halo	99.84
2gmh_A	584	Electron transfer flavoprotein-ubiquinone oxidored	99.83
2weu_A	511	Tryptophan 5-halogenase; regioselectivity, antifun	99.82
3ihm_A	430	Styrene monooxygenase A; rossman fold, anti-parall	99.79
2bry_A	497	NEDD9 interacting protein with calponin homology a	99.72
1yvv_A	336	Amine oxidase, flavin-containing; oxidoreductase,	99.63
3v76_A	417	Flavoprotein; structural genomics, PSI-biology, NE	99.4
3dje_A	438	Fructosyl amine: oxygen oxidoreductase; fructosyl-	99.37
3dme_A	369	Conserved exported protein; structural genomics, P	99.36
1rp0_A	284	ARA6, thiazole biosynthetic enzyme; protein ligand	99.36
3nlc_A	549	Uncharacterized protein VP0956; FAD-binding protei	99.36
2i0z_A	447	NAD(FAD)-utilizing dehydrogenases; structural geno	99.35
2oln_A	397	NIKD protein; flavoprotein, rossmann fold, oxidore	99.34
3ps9_A	676	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	99.33
1y56_B	382	Sarcosine oxidase; dehydrogenase, protein-protein	99.32
1qo8_A	566	Flavocytochrome C3 fumarate reductase; oxidoreduct	99.31
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	99.29
1y0p_A	571	Fumarate reductase flavoprotein subunit; flavocyto	99.29
3nyc_A	381	D-arginine dehydrogenase; FAD, imino-arginine, oxi	99.26
3da1_A	561	Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9	99.26
1chu_A	540	Protein (L-aspartate oxidase); flavoenzyme, NAD bi	99.26
2gqf_A	401	Hypothetical protein HI0933; structural genomics,	99.26
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	99.26
2cul_A	232	Glucose-inhibited division protein A-related PROT	99.25
2gf3_A	389	MSOX, monomeric sarcosine oxidase; flavoprotein ox	99.25
3jsk_A	344	Cypbp37 protein; octameric thiazole synthase, bios	99.24
2uzz_A	372	N-methyl-L-tryptophan oxidase; N-methyltryptophan	99.24
1ryi_A	382	Glycine oxidase; flavoprotein, protein-inhibitor c	99.24
2qcu_A	501	Aerobic glycerol-3-phosphate dehydrogenase; glycer	99.22
2gag_B	405	Heterotetrameric sarcosine oxidase beta-subunit; f	99.21
3c4n_A	405	Uncharacterized protein DR_0571; alpha-beta protei	99.18
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	99.18
4dgk_A	501	Phytoene dehydrogenase; the FAD/NAD(P)-binding ros	99.17
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	99.17
3ces_A	651	MNMG, tRNA uridine 5-carboxymethylaminomethyl modi	99.17
2ywl_A	180	Thioredoxin reductase related protein; uncharacter	99.16
1d4d_A	572	Flavocytochrome C fumarate reductase; oxidoreducta	99.14
3i6d_A	470	Protoporphyrinogen oxidase; protein-inhibitor comp	99.14
1kf6_A	602	Fumarate reductase flavoprotein; respiration, fuma	99.13
4at0_A	510	3-ketosteroid-delta4-5alpha-dehydrogenase; oxidore	99.13
3qj4_A	342	Renalase; FAD/NAD(P)-binding rossmann fold superfa	99.13
2zxi_A	637	TRNA uridine 5-carboxymethylaminomethyl modificat	99.11
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	99.1
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	99.1
3cp8_A	641	TRNA uridine 5-carboxymethylaminomethyl modificati	99.09
2wdq_A	588	Succinate dehydrogenase flavoprotein subunit; succ	99.08
3axb_A	448	Putative oxidoreductase; dinucleotide-binding fold	99.08
4fk1_A	304	Putative thioredoxin reductase; structural genomic	99.08
2h88_A	621	Succinate dehydrogenase flavoprotein subunit; comp	99.08
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	99.08
2gjc_A	326	Thiazole biosynthetic enzyme, mitochondrial; gluta	99.07
2rgh_A	571	Alpha-glycerophosphate oxidase; flavoprotein oxida	99.04
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	99.03
2ivd_A	478	PPO, PPOX, protoporphyrinogen oxidase; porphyrin b	99.02
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	99.02
2e5v_A	472	L-aspartate oxidase; archaea, oxidoreductase; HET:	99.01
2bs2_A	660	Quinol-fumarate reductase flavoprotein subunit A;	99.01
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	98.99
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	98.97
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	98.95
1s3e_A	520	Amine oxidase [flavin-containing] B; human monoami	98.95
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	98.94
3ka7_A	425	Oxidoreductase; structural genomics, PSI-2, protei	98.94
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	98.94
1pj5_A	830	N,N-dimethylglycine oxidase; channelling, FAD bind	98.93
3kkj_A	336	Amine oxidase, flavin-containing; oxidoreductase,	98.93
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	98.93
3lov_A	475	Protoporphyrinogen oxidase; structural genomics, J	98.93
4gde_A	513	UDP-galactopyranose mutase; flavin adenine dinucle	98.92
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	98.92
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	98.91
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	98.91
3nrn_A	421	Uncharacterized protein PF1083; alpha-beta protein	98.91
1w4x_A	542	Phenylacetone monooxygenase; baeyer-villiger, FAD;	98.9
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	98.9
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	98.89
4a5l_A	314	Thioredoxin reductase; oxidoreductase, redox metab	98.89
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	98.88
3k7m_X	431	6-hydroxy-L-nicotine oxidase; enantiomeric substra	98.88
2b9w_A	424	Putative aminooxidase; isomerase, conjugated linol	98.86
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	98.85
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	98.84
2vvm_A	495	Monoamine oxidase N; FAD, peroxisome, flavoprotein	98.84
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	98.83
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	98.82
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	98.82
3gyx_A	662	Adenylylsulfate reductase; oxidoreductase; HET: FA	98.81
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	98.8
1jnr_A	643	Adenylylsulfate reductase; oxidoreductase; HET: FA	98.8
3nks_A	477	Protoporphyrinogen oxidase; FAD containing protein	98.79
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	98.77
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	98.77
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	98.74
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	98.72
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	98.72
1ojt_A	482	Surface protein; redox-active center, glycolysis,	98.7
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	98.69
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	98.69
3sx6_A	437	Sulfide-quinone reductase, putative; sulfide:quino	98.69
3p1w_A	475	Rabgdi protein; GDI RAB, malaria, structural genom	98.69
4gut_A	776	Lysine-specific histone demethylase 1B; histone de	98.68
3h8l_A	409	NADH oxidase; membrane protein, complete form, ros	98.68
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	98.67
4dna_A	463	Probable glutathione reductase; structural genomic	98.66
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	98.65
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	98.65
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	98.63
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	98.62
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	98.62
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	98.62
3r9u_A	315	Thioredoxin reductase; structural genomics, center	98.61
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	98.6
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	98.6
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	98.6
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	98.59
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	98.58
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	98.57
3h28_A	430	Sulfide-quinone reductase; monotopic membrane prot	98.56
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	98.56
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	98.55
1d5t_A	433	Guanine nucleotide dissociation inhibitor; ultra-h	98.54
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	98.53
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	98.51
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	98.51
4gcm_A	312	TRXR, thioredoxin reductase; FAD/NAD-linked reduct	98.51
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	98.5
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	98.5
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	98.48
1y56_A	493	Hypothetical protein PH1363; dehydrogenase, protei	98.48
3hyw_A	430	Sulfide-quinone reductase; monotopic membrane prot	98.47
4b1b_A	542	TRXR, thioredoxin reductase; oxidoreductase, FAD,	98.46
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	98.46
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	98.44
3fpz_A	326	Thiazole biosynthetic enzyme; FAD, mitochondrion,	98.41
1c0p_A	363	D-amino acid oxidase; alpha-beta-alpha motif, flav	98.4
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	98.37
4eqs_A	437	Coenzyme A disulfide reductase; oxidoreductase; HE	98.36
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	98.35
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	98.35
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	98.34
1v0j_A	399	UDP-galactopyranose mutase; flavoprotein, isomeras	98.33
2yg5_A	453	Putrescine oxidase; oxidoreductase, flavin; HET: F	98.33
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	98.32
2bcg_G	453	Secretory pathway GDP dissociation inhibitor; RABG	98.3
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	98.25
3t37_A	526	Probable dehydrogenase; BET alpha beta fold, ADP b	98.23
1rsg_A	516	FMS1 protein; FAD binding motif, oxidoreductase; H	98.22
3q9t_A	577	Choline dehydrogenase and related flavoproteins; g	98.21
3vrd_B	401	FCCB subunit, flavocytochrome C flavin subunit; su	98.21
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	98.2
4b63_A	501	L-ornithine N5 monooxygenase; oxidoreductase, side	98.2
1ojt_A	482	Surface protein; redox-active center, glycolysis,	98.2
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	98.19
1sez_A	504	Protoporphyrinogen oxidase, mitochondrial; FAD-bin	98.19
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	98.17
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	98.16
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	98.16
3qvp_A	583	Glucose oxidase; oxidoreductase; HET: NAG BMA MAN	98.16
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	98.15
4dsg_A	484	UDP-galactopyranose mutase; rossmann fold, flavin	98.15
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	98.13
3g3e_A	351	D-amino-acid oxidase; FAD, flavoprotein, oxidoredu	98.11
2jae_A	489	L-amino acid oxidase; oxidoreductase, dimerisation	98.11
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	98.11
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	98.1
4g6h_A	502	Rotenone-insensitive NADH-ubiquinone oxidoreducta	98.1
2bi7_A	384	UDP-galactopyranose mutase; FAD, flavoprotein, iso	98.1
2e1m_A	376	L-glutamate oxidase; L-amino acid oxidase, FAD, L-	98.1
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	98.09
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	98.08
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	98.08
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	98.08
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	98.08
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	98.07
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	98.07
3hdq_A	397	UDP-galactopyranose mutase; substrate and inhibito	98.05
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	98.05
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	98.05
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	98.03
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	98.03
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	98.03
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	98.02
3g5s_A	443	Methylenetetrahydrofolate--tRNA-(uracil-5-)- methy	98.0
1fec_A	490	Trypanothione reductase; redox-active center, oxid	97.99
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	97.99
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	97.98
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	97.98
1i8t_A	367	UDP-galactopyranose mutase; rossman fold, FAD, con	97.96
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	97.95
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	97.91
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	97.91
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	97.91
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	97.9
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	97.9
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	97.89
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	97.89
3pl8_A	623	Pyranose 2-oxidase; substrate complex, H167A mutan	97.88
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	97.87
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	97.87
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	97.86
2iid_A	498	L-amino-acid oxidase; flavoenzyme, FAD binding dom	97.85
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	97.84
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	97.82
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	97.81
1fec_A	490	Trypanothione reductase; redox-active center, oxid	97.81
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	97.8
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	97.8
1kdg_A	546	CDH, cellobiose dehydrogenase; GMC oxidoreductase,	97.79
1lqt_A	456	FPRA; NADP+ derivative, oxidoreductase, structural	97.78
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	97.75
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	97.74
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	97.74
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	97.74
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	97.71
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	97.71
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	97.7
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	97.7
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	97.7
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	97.7
1b37_A	472	Protein (polyamine oxidase); flavin-dependent amin	97.68
3r9u_A	315	Thioredoxin reductase; structural genomics, center	97.66
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	97.64
2z3y_A	662	Lysine-specific histone demethylase 1; chromatin,	97.62
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	97.62
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	97.6
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	97.58
2xag_A	852	Lysine-specific histone demethylase 1; amine oxida	97.58
4eqs_A	437	Coenzyme A disulfide reductase; oxidoreductase; HE	97.52
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	97.51
2gag_A	965	Heterotetrameric sarcosine oxidase alpha-subunit;	97.51
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	97.49
1cjc_A	460	Protein (adrenodoxin reductase); flavoenzyme, MAD	97.49
1ju2_A	536	HydroxynitrIle lyase; flavin, GMC oxidoreductase,	97.49
1gpe_A	587	Protein (glucose oxidase); oxidoreductase(flavopro	97.46
1n4w_A	504	CHOD, cholesterol oxidase; flavoenzyme, steroid me	97.45
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	97.42
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	97.4
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	97.39
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	97.38
1coy_A	507	Cholesterol oxidase; oxidoreductase(oxygen recepto	97.36
3fim_B	566	ARYL-alcohol oxidase; AAO, lignin degradation, oxi	97.33
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	97.3
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	97.3
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	97.3
4g6h_A	502	Rotenone-insensitive NADH-ubiquinone oxidoreducta	97.29
2jbv_A	546	Choline oxidase; alcohol oxidation, flavoenyzme ox	97.27
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	97.2
3ayj_A	721	Pro-enzyme of L-phenylalanine oxidase; amino acid	97.17
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	97.12
1vg0_A	650	RAB proteins geranylgeranyltransferase component A	97.09
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	97.04
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	96.92
4a5l_A	314	Thioredoxin reductase; oxidoreductase, redox metab	96.92
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	96.88
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	96.82
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	96.78
1id1_A	153	Putative potassium channel protein; RCK domain, E.	96.67
1cjc_A	460	Protein (adrenodoxin reductase); flavoenzyme, MAD	96.67
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	96.63
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	96.62
2gag_A	965	Heterotetrameric sarcosine oxidase alpha-subunit;	96.5
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	96.47
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	96.47
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	96.38
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	96.37
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	96.35
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	96.31
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	96.12
4gcm_A	312	TRXR, thioredoxin reductase; FAD/NAD-linked reduct	96.09
3ado_A	319	Lambda-crystallin; L-gulonate 3-dehydrogenase, str	96.06
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	95.95
1lqt_A	456	FPRA; NADP+ derivative, oxidoreductase, structural	95.87
3c85_A	183	Putative glutathione-regulated potassium-efflux S	95.78
3tl2_A	315	Malate dehydrogenase; center for structural genomi	95.76
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	95.43
3ghy_A	335	Ketopantoate reductase protein; oxidoreductase, NA	95.4
3lk7_A	451	UDP-N-acetylmuramoylalanine--D-glutamate ligase; a	95.37
3i83_A	320	2-dehydropantoate 2-reductase; structural genomics	95.32
3d0o_A	317	L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly	95.28
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	95.26
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	95.24
1pzg_A	331	LDH, lactate dehydrogenase; apicomplexa, APAD, tet	95.1
3mog_A	483	Probable 3-hydroxybutyryl-COA dehydrogenase; struc	95.07
2hjr_A	328	Malate dehydrogenase; malaria, structural genomics	95.01
3hn2_A	312	2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str	94.99
3h8l_A	409	NADH oxidase; membrane protein, complete form, ros	94.9
2ewd_A	317	Lactate dehydrogenase,; protein-substrate_cofactor	94.88
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	94.86
1t2d_A	322	LDH-P, L-lactate dehydrogenase; ternary complex, o	94.84
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	94.79
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	94.79
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	94.71
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	94.69
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	94.69
1ks9_A	291	KPA reductase;, 2-dehydropantoate 2-reductase; PAN	94.66
2x5o_A	439	UDP-N-acetylmuramoylalanine--D-glutamate ligase; A	94.65
3sx6_A	437	Sulfide-quinone reductase, putative; sulfide:quino	94.6
1ldn_A	316	L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA	94.56
2raf_A	209	Putative dinucleotide-binding oxidoreductase; NP_7	94.56
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	94.5
3gvi_A	324	Malate dehydrogenase; NAD, oxidoreductase, tricarb	94.48
3g17_A	294	Similar to 2-dehydropantoate 2-reductase; structur	94.46
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	94.45
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	94.45
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	94.44
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	94.42
3qsg_A	312	NAD-binding phosphogluconate dehydrogenase-like P;	94.39
3g79_A	478	NDP-N-acetyl-D-galactosaminuronic acid dehydrogen;	94.38
3vtf_A	444	UDP-glucose 6-dehydrogenase; two discrete alpha/be	94.38
3qha_A	296	Putative oxidoreductase; seattle structural genomi	94.31
1y6j_A	318	L-lactate dehydrogenase; southeast collaboratory f	94.26
1lld_A	319	L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N	94.23
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	94.23
3p7m_A	321	Malate dehydrogenase; putative dehydrogenase, enzy	94.22
1kyq_A	274	Met8P, siroheme biosynthesis protein Met8; homodim	94.21
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	94.19
4b1b_A	542	TRXR, thioredoxin reductase; oxidoreductase, FAD,	94.16
3pqe_A	326	L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas	94.14
2uyy_A	316	N-PAC protein; long-chain dehydrogenase, cytokine;	94.11
2q3e_A	467	UDP-glucose 6-dehydrogenase; hexamer, structural g	94.1
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	94.08
1evy_A	366	Glycerol-3-phosphate dehydrogenase; rossmann fold,	94.02
2zyd_A	480	6-phosphogluconate dehydrogenase, decarboxylating;	93.98
3l6d_A	306	Putative oxidoreductase; structural genomics, prot	93.96
4g65_A	461	TRK system potassium uptake protein TRKA; structur	93.95
3pdu_A	287	3-hydroxyisobutyrate dehydrogenase family protein;	93.95
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	93.92
2qyt_A	317	2-dehydropantoate 2-reductase; APC81190, porphyrom	93.91
3h28_A	430	Sulfide-quinone reductase; monotopic membrane prot	93.83
3c24_A	286	Putative oxidoreductase; YP_511008.1, structural g	93.82
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	93.82
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	93.79
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	93.79
3dtt_A	245	NADP oxidoreductase; structural genomics, joint ce	93.78
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	93.77
3dhn_A	227	NAD-dependent epimerase/dehydratase; reductase, PF	93.75
3pid_A	432	UDP-glucose 6-dehydrogenase; rossmann fold, oxidor	93.74
3pef_A	287	6-phosphogluconate dehydrogenase, NAD-binding; gam	93.7
1mv8_A	436	GMD, GDP-mannose 6-dehydrogenase; rossman fold, do	93.68
3ego_A	307	Probable 2-dehydropantoate 2-reductase; structural	93.66
4huj_A	220	Uncharacterized protein; PSI-biology, nysgrc, stru	93.61
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	93.6
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	93.59
2rcy_A	262	Pyrroline carboxylate reductase; malaria, structur	93.56
3k6j_A	460	Protein F01G10.3, confirmed by transcript evidenc;	93.55
4ffl_A	363	PYLC; amino acid, biosynthesis of pyrrolysine, iso	93.55
2v6b_A	304	L-LDH, L-lactate dehydrogenase; oxidoreductase, ra	93.54
1z82_A	335	Glycerol-3-phosphate dehydrogenase; TM0378, struct	93.46
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	93.45
2h78_A	302	Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601	93.44
1zej_A	293	HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural	93.41
3ktd_A	341	Prephenate dehydrogenase; structural genomics, joi	93.38
3hwr_A	318	2-dehydropantoate 2-reductase; YP_299159.1, PANE/A	93.37
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	93.37
3tri_A	280	Pyrroline-5-carboxylate reductase; amino acid bios	93.35
1ur5_A	309	Malate dehydrogenase; oxidoreductase, tricarboxyli	93.33
2o3j_A	481	UDP-glucose 6-dehydrogenase; structural genomics,	93.3
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	93.26
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	93.22
1guz_A	310	Malate dehydrogenase; oxidoreductase, tricarboxyli	93.22
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	93.19
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	93.17
3eag_A	326	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME	93.16
2izz_A	322	Pyrroline-5-carboxylate reductase 1; amino-acid bi	93.1
3dfu_A	232	Uncharacterized protein from 6-phosphogluconate de	93.02
1x0v_A	354	GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase	93.02
3cky_A	301	2-hydroxymethyl glutarate dehydrogenase; rossmann	93.0
4gwg_A	484	6-phosphogluconate dehydrogenase, decarboxylating;	92.91
4ezb_A	317	Uncharacterized conserved protein; structural geno	92.89
2vns_A	215	Metalloreductase steap3; metal-binding, transmembr	92.86
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	92.84
2g5c_A	281	Prephenate dehydrogenase; TYRA, oxidoreductase; HE	92.84
2iz1_A	474	6-phosphogluconate dehydrogenase, decarboxylating;	92.69
1txg_A	335	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid	92.68
2cvz_A	289	Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase;	92.67
1hdo_A	206	Biliverdin IX beta reductase; foetal metabolism, H	92.66
1dlj_A	402	UDP-glucose dehydrogenase; rossmann fold, ternary	92.61
4dna_A	463	Probable glutathione reductase; structural genomic	92.59
3d1l_A	266	Putative NADP oxidoreductase BF3122; structural ge	92.53
2p4q_A	497	6-phosphogluconate dehydrogenase, decarboxylating;	92.52
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	92.51
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	92.39
2aef_A	234	Calcium-gated potassium channel MTHK; rossmann fol	92.38
1hyh_A	309	L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2	92.37
1vpd_A	299	Tartronate semialdehyde reductase; structural geno	92.25
2a9f_A	398	Putative malic enzyme ((S)-malate:NAD+ oxidoreduct	92.22
1nyt_A	271	Shikimate 5-dehydrogenase; alpha/beta domains, WID	92.22
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	92.21
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	92.18
2pv7_A	298	T-protein [includes: chorismate mutase (EC 5.4.99	92.16
3q2o_A	389	Phosphoribosylaminoimidazole carboxylase, ATPase;	92.03
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	91.98
3rui_A	340	Ubiquitin-like modifier-activating enzyme ATG7; au	91.98
4e4t_A	419	Phosphoribosylaminoimidazole carboxylase, ATPase;	91.97
2pd4_A	275	Enoyl-[acyl-carrier-protein] reductase [NADH]; ant	91.94
3h8v_A	292	Ubiquitin-like modifier-activating enzyme 5; rossm	91.92
3vps_A	321	TUNA, NAD-dependent epimerase/dehydratase; tunicam	91.9
1yj8_A	375	Glycerol-3-phosphate dehydrogenase; SGPP, structur	91.87
3vku_A	326	L-LDH, L-lactate dehydrogenase; rossmann fold, NAD	91.85
1oju_A	294	MDH, malate dehydrogenase; hyperthermophilic, oxid	91.83
1jay_A	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma	91.75
1a5z_A	319	L-lactate dehydrogenase; oxidoreductase, glycolysi	91.74
3gt0_A	247	Pyrroline-5-carboxylate reductase; structural geno	91.74
1zud_1	251	Adenylyltransferase THIF; thiamin, thiazole, prote	91.73
2gf2_A	296	Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct	91.69
4b63_A	501	L-ornithine N5 monooxygenase; oxidoreductase, side	91.67
1vl6_A	388	Malate oxidoreductase; TM0542, NAD-dependent malic	91.6
3ojo_A	431	CAP5O; rossmann fold, complex with cofactor NAD an	91.59
1yqg_A	263	Pyrroline-5-carboxylate reductase; structural geno	91.53
3fi9_A	343	Malate dehydrogenase; structural genomics, oxidore	91.53
1pjq_A	457	CYSG, siroheme synthase; rossman fold, nucleotide	91.43
2egg_A	297	AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff	91.39
3phh_A	269	Shikimate dehydrogenase; shikimate pathway, helico	91.36
2we8_A	386	Xanthine dehydrogenase; oxidoreductase; 2.30A {Myc	91.35
2wtb_A	725	MFP2, fatty acid multifunctional protein (ATMFP2);	91.33
2pgd_A	482	6-phosphogluconate dehydrogenase; oxidoreductase (	91.32
3nep_X	314	Malate dehydrogenase; halophIle, molecular adpatat	91.31
3ond_A	488	Adenosylhomocysteinase; plant protein, enzyme-subs	91.29
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	91.15
4gx0_A	565	TRKA domain protein; membrane protein, ION channel	90.99
3b1f_A	290	Putative prephenate dehydrogenase; enzyme, 4-hydro	90.98
3c7a_A	404	Octopine dehydrogenase; L) stereospecific opine de	90.98
1qyc_A	308	Phenylcoumaran benzylic ether reductase PT1; NADPH	90.77
3ldh_A	330	Lactate dehydrogenase; oxidoreductase, CHOH donor,	90.73
3h5n_A	353	MCCB protein; ubiquitin-activating enzyme, microci	90.72
4aj2_A	331	L-lactate dehydrogenase A chain; oxidoreductase-in	90.71
3orq_A	377	N5-carboxyaminoimidazole ribonucleotide synthetas;	90.64
4gbj_A	297	6-phosphogluconate dehydrogenase NAD-binding; stru	90.59
3o38_A	266	Short chain dehydrogenase; tuberculosis, ortholog	90.59
3gvp_A	435	Adenosylhomocysteinase 3; protein CO-factor comple	90.57
3nrc_A	280	Enoyl-[acyl-carrier-protein] reductase (NADH); ros	90.56
1np3_A	338	Ketol-acid reductoisomerase; A DEEP figure-OF-eigh	90.49
1pgj_A	478	6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o	90.44
2d1y_A	256	Hypothetical protein TT0321; strucrtural genomics,	90.42
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	90.41
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	90.37
1wdk_A	715	Fatty oxidation complex alpha subunit; alpha2BETA2	90.36
3slg_A	372	PBGP3 protein; structural genomics, seattle struct	90.33
2h7i_A	269	Enoyl-[acyl-carrier-protein] reductase [NADH]; oxi	90.29
3ce6_A	494	Adenosylhomocysteinase; protein-substrate complex,	90.25
1cyd_A	244	Carbonyl reductase; short-chain dehydrogenase, oxi	90.23
1p77_A	272	Shikimate 5-dehydrogenase; NADPH, oxidoreductase;	90.22
2zqz_A	326	L-LDH, L-lactate dehydrogenase; oxidoreductase, ro	90.16
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	90.13
2i6t_A	303	Ubiquitin-conjugating enzyme E2-like isoform A; L-	90.07
1qsg_A	265	Enoyl-[acyl-carrier-protein] reductase; enoyl redu	90.02
1b37_A	472	Protein (polyamine oxidase); flavin-dependent amin	89.98
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	89.97
1b8p_A	329	Protein (malate dehydrogenase); oxidoreductase; 1.	89.94
3rkr_A	262	Short chain oxidoreductase; rossmann fold; HET: NA	89.88
1qyd_A	313	Pinoresinol-lariciresinol reductase; NADPH-depende	89.83
4id9_A	347	Short-chain dehydrogenase/reductase; putative dehy	89.83
4gsl_A	615	Ubiquitin-like modifier-activating enzyme ATG7; ub	89.81
3d3w_A	244	L-xylulose reductase; uronate cycle, short-chain d	89.74
3don_A	277	Shikimate dehydrogenase; alpha-beta structure, ros	89.71
1yb4_A	295	Tartronic semialdehyde reductase; structural genom	89.67
1ez4_A	318	Lactate dehydrogenase; rossmann fold, oxidoreducta	89.63
2ahr_A	259	Putative pyrroline carboxylate reductase; pyrrolin	89.61
2d4a_B	308	Malate dehydrogenase; archaea, hyperthermophIle, o	89.52
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	89.46
2x6t_A	357	ADP-L-glycero-D-manno-heptose-6-epimerase; isomera	89.43
2d5c_A	263	AROE, shikimate 5-dehydrogenase; substrate, dimer,	89.42
2z1m_A	345	GDP-D-mannose dehydratase; short-chain dehydrogena	89.41
2hk9_A	275	Shikimate dehydrogenase; shikimate pathway, drug d	89.39
4fs3_A	256	Enoyl-[acyl-carrier-protein] reductase [NADPH] FA;	89.33
4b4o_A	298	Epimerase family protein SDR39U1; isomerase; HET:	89.3
3jyo_A	283	Quinate/shikimate dehydrogenase; enzyme-cofactor c	89.3
3vh1_A	598	Ubiquitin-like modifier-activating enzyme ATG7; au	89.15
1i36_A	264	Conserved hypothetical protein MTH1747; NADP bindi	89.12
2ag5_A	246	DHRS6, dehydrogenase/reductase (SDR family) member	89.05
3u62_A	253	Shikimate dehydrogenase; shikimate pathway, oxidor	89.03
3oig_A	266	Enoyl-[acyl-carrier-protein] reductase [NADH]; fat	88.96
1leh_A	364	Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi	88.95
1nvt_A	287	Shikimate 5'-dehydrogenase; structural genomics, P	88.87
3tnl_A	315	Shikimate dehydrogenase; structural genomics, cent	88.86
1edz_A	320	5,10-methylenetetrahydrofolate dehydrogenase; nucl	88.83

>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*

Probab=99.97  E-value=7.6e-31  Score=256.82  Aligned_cols=304  Identities=16%  Similarity=0.207  Sum_probs=183.2

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceee
Q psy9141           4 NSKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRAR   83 (379)
Q Consensus         4 m~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~   83 (379)
                      ++++||+||||||+||++|+.|+++|++|+||||.+.+...    ++++  .+++++.++|+++|+++.+...+.+....
T Consensus        21 ~~~~dV~IVGaG~aGl~~A~~La~~G~~V~v~E~~~~~~~~----~~~~--~l~~~~~~~l~~lg~~~~~~~~~~~~~~~   94 (407)
T 3rp8_A           21 QGHMKAIVIGAGIGGLSAAVALKQSGIDCDVYEAVKEIKPV----GAAI--SVWPNGVKCMAHLGMGDIMETFGGPLRRM   94 (407)
T ss_dssp             --CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSCC--------CEE--EECHHHHHHHHHTTCHHHHHHHSCCCCEE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCCCc----CeeE--EECHHHHHHHHHCCCHHHHHhhcCCCcce
Confidence            55799999999999999999999999999999999866433    5665  68999999999999999998888888888


Q ss_pred             EEEecC-CcE-EEeeCC-------CC---CcH----H-HHhcCCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEee
Q psy9141          84 MIHGQN-GKL-REIPYD-------PV---HNQ----V-ELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDN  146 (379)
Q Consensus        84 ~~~~~~-g~~-~~~~~~-------~~---~~~----~-~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~a  146 (379)
                      .+++.. |.. ..+++.       ..   ..+    . .......++|+++++|++++.+++++++++. +|++   ++|
T Consensus        95 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~-~g~~---~~a  170 (407)
T 3rp8_A           95 AYRDFRSGENMTQFSLAPLIERTGSRPCPVSRAELQREMLDYWGRDSVQFGKRVTRCEEDADGVTVWFT-DGSS---ASG  170 (407)
T ss_dssp             EEEETTTCCEEEEEECHHHHHHHSSCCEEEEHHHHHHHHHHHHCGGGEEESCCEEEEEEETTEEEEEET-TSCE---EEE
T ss_pred             EEEECCCCCEeEEecchhhhhhcCCceEEEEHHHHHHHHHHhCCcCEEEECCEEEEEEecCCcEEEEEc-CCCE---Eee
Confidence            888876 543 233321       11   111    1 1111112899999999999999999999999 8987   999


Q ss_pred             cEEEecCCCChHHHHHhhhcC-CCCccceeeeeeeEEEeeCCCCCccccccccceeeecCCCCeEEEEEecCCCceeee-
Q psy9141         147 QLIIGADGAYSGVRKCLMKQS-MFNYSQTYIEHGYMELCIPPSEDNEVWLYKNRLLSSVPEVRKRISLRAQSLKSLMNF-  224 (379)
Q Consensus       147 dlVV~AdG~~S~vr~~l~~~~-~~~~~~~~i~~~~~~~~~p~~~~~~~~~~p~~~~~~~p~~~~~~~~~~~~~~~~~~~-  224 (379)
                      |+||+|||.+|.+|+++.+.. ...+........  ....+....     .+.....++.+. ..+.+.|...+.+.++ 
T Consensus       171 ~~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~-----~~~~~~~~~~~~-~~~~~~p~~~~~~~~~~  242 (407)
T 3rp8_A          171 DLLIAADGSHSALRPWVLGFTPQRRYAGYVNWNG--LVEIDEALA-----PGDQWTTFVGEG-KQVSLMPVSAGRFYFFF  242 (407)
T ss_dssp             SEEEECCCTTCSSHHHHHSSCCCCEEEEEEEEEE--EEECCTTTC-----CTTEEEEEEETT-EEEEEEEETTTEEEEEE
T ss_pred             CEEEECCCcChHHHHHhcCCCCCCcccCcEEEEE--EEecccccC-----CCCceEEEECCC-cEEEEEEcCCCeEEEEE
Confidence            999999999999999984332 222222111111  111221000     011112221122 2344555554443321 


Q ss_pred             --cCCCC----CCChhhhcccc--ccccc---ccCCcccC----CCccccCCCCCccccCCcEEEe-eecccCCCcchhh
Q psy9141         225 --PRADQ----GGDKRDCLLHE--GTSRI---LVPNMRLS----NHLDRDQPCKPLLDFKNPIKIQ-SHAVVNEFYKQES  288 (379)
Q Consensus       225 --p~~~~----~~~~~~~l~~~--g~~~~---~~~~~~~~----~~~~~~~~~~~~~~~~~~~liG-Ah~~~~P~~GQG~  288 (379)
                        +.+..    .....+.+.+.  ++...   +.......    .......+...|. ..|++++| |++.++|++|||+
T Consensus       243 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~rv~LvGDAAh~~~P~~GqG~  321 (407)
T 3rp8_A          243 DVPLPAGLAEDRDTLRADLSRYFAGWAPPVQKLIAALDPQTTNRIEIHDIEPFSRLV-RGRVALLGDAGHSTTPDIGQGG  321 (407)
T ss_dssp             EEECCTTCSCCTTTHHHHHHHHTTTCCHHHHHHHHHSCGGGCEEEEEEECCCCSCCE-ETTEEECGGGTCCCCGGGSCHH
T ss_pred             EeCCCcCCCCCchhHHHHHHHHhcCCChHHHHHHHcCCccceeEEeeEecCCCCcee-cCCEEEEEcccccCCcchhhhH
Confidence              21111    11111222111  11000   00000000    0001112234554 35899999 5555569999999


Q ss_pred             hhHHHHHHHHHHhhcc------ccccccccc-------hhhhhheeeeEEe
Q psy9141         289 LIVASLCQEKIEKMFD------NTSTYKSRH-------INFIHRSYHLYTV  326 (379)
Q Consensus       289 n~gl~Da~~L~~~l~~------~~~~~~~~~-------~~~~~~~~~~~t~  326 (379)
                      |+|++||..|+++|.+      .+.+|++++       +..++.+..+|..
T Consensus       322 ~~al~da~~La~~L~~~~~~~~~l~~Y~~~r~~~~~~~~~~s~~~~~~~~~  372 (407)
T 3rp8_A          322 CAAMEDAVVLGAVFRQTRDIAAALREYEAQRCDRVRDLVLKARKRCDITHG  372 (407)
T ss_dssp             HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Confidence            9999999999999975      345677765       3444444445543

>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus}

Probab=99.97  E-value=1.3e-30  Score=265.59  Aligned_cols=310  Identities=16%  Similarity=0.062  Sum_probs=180.6

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeEE
Q psy9141           6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARMI   85 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~~   85 (379)
                      ++||+||||||+||++|+.|+++|++|+||||.+.+...    ++++  ++++++.++|+++|+|+.+...+....... 
T Consensus        49 ~~DVvIVGaG~aGL~~A~~La~~G~~V~VlEr~~~~~~~----~r~~--~l~~~s~~~l~~lGl~~~l~~~~~~~~~~~-  121 (570)
T 3fmw_A           49 TTDVVVVGGGPVGLMLAGELRAGGVGALVLEKLVEPVGH----DRAG--ALHIRTVETLDLRGLLDRFLEGTQVAKGLP-  121 (570)
T ss_dssp             --CEEEECCSHHHHHHHHHHHHTTCCEEEEBSCSSCCCS----SSCC--CBCHHHHHHHHTTTCHHHHTTSCCBCSBCC-
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEEcCCCCCCCC----ceEE--EECHHHHHHHHHcCChHHHHhcCcccCCce-
Confidence            589999999999999999999999999999999876533    5555  689999999999999999987654433210 


Q ss_pred             EecCCc---E-------EEeeCCCCCcH-------HHHhcCCCCeEEeCceEEEEEecCCeEEEEE--ccCCceeEEEee
Q psy9141          86 HGQNGK---L-------REIPYDPVHNQ-------VELEQYPDCNIYFQHKLINLDVNSGNVTFYR--TEDNSETKITDN  146 (379)
Q Consensus        86 ~~~~g~---~-------~~~~~~~~~~~-------~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~--~~~G~~~~~i~a  146 (379)
                      +  .+.   .       ...++.....+       ....+..|++|+++++|++++.+++++++++  . +|+ .+ ++|
T Consensus       122 ~--~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~a~~~gv~i~~~~~v~~l~~~~~~v~v~~~~~-~G~-~~-~~a  196 (570)
T 3fmw_A          122 F--AGIFTQGLDFGLVDTRHPYTGLVPQSRTEALLAEHAREAGAEIPRGHEVTRLRQDAEAVEVTVAGP-SGP-YP-VRA  196 (570)
T ss_dssp             B--TTBCTTCCBGGGSCCSCCSBBCCCHHHHHHHHHHHHHHHTEECCBSCEEEECCBCSSCEEEEEEET-TEE-EE-EEE
T ss_pred             e--CCcccccccccccCCCCCeeEEeCHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCeEEEEEEeC-CCc-EE-EEe
Confidence            1  111   0       01111111122       1112224899999999999999999988887  5 772 23 999


Q ss_pred             cEEEecCCCChHHHHHh-hhcCCCCccceeeeeeeEEEeeCCCCCcccc--ccccceeeecCCCCeEEEE-EecCCCc--
Q psy9141         147 QLIIGADGAYSGVRKCL-MKQSMFNYSQTYIEHGYMELCIPPSEDNEVW--LYKNRLLSSVPEVRKRISL-RAQSLKS--  220 (379)
Q Consensus       147 dlVV~AdG~~S~vr~~l-~~~~~~~~~~~~i~~~~~~~~~p~~~~~~~~--~~p~~~~~~~p~~~~~~~~-~~~~~~~--  220 (379)
                      |+||+|||.+|.+|+++ ++.+...+.+.++.   ..+..+... -.+.  ..|...          +.+ +|...+.  
T Consensus       197 ~~vV~ADG~~S~vR~~lGi~~~~~~~~~~~~~---~~v~~~~~~-~~~~~~~~~~G~----------~~~~~P~~~g~~~  262 (570)
T 3fmw_A          197 RYGVGCDGGRSTVRRLAADRFPGTEATVRALI---GYVTTPERE-VPRRWERTPDGI----------LVLAFPPEGGLGP  262 (570)
T ss_dssp             SEEEECSCSSCHHHHHTTCCCCCCCCCEEEEE---EECCCCSCS-SCCCCCCCCSSC----------EEECCCC------
T ss_pred             CEEEEcCCCCchHHHHcCCCCccceeeeEEEE---EEEEecCCC-cceEEEecCCEE----------EEEEeecCCCeEE
Confidence            99999999999999998 66666666665431   121111100 0111  111111          111 2222221  


Q ss_pred             -eee-ecCCC----CCCChhhhcccc--cccccccCCccc----CCCccccCCCCCccccCCcEEEe-eecccCCCcchh
Q psy9141         221 -LMN-FPRAD----QGGDKRDCLLHE--GTSRILVPNMRL----SNHLDRDQPCKPLLDFKNPIKIQ-SHAVVNEFYKQE  287 (379)
Q Consensus       221 -~~~-~p~~~----~~~~~~~~l~~~--g~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~liG-Ah~~~~P~~GQG  287 (379)
                       +.. .+...    ......+.+...  ..+.........    ..+.........|. ..|++++| |++.++|++|||
T Consensus       263 ~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~-~grv~LvGDAAH~~~P~~GqG  341 (570)
T 3fmw_A          263 GWSSSSTGHSPAADEGPVTLEDLGAAVARVRGTPLTLTEPVSWLSRFGDASRQAKRYR-SGRVLLAGDAAHVHFPIGGQG  341 (570)
T ss_dssp             CEEEEEESCC-----CCCCHHHHHHHTTSSSSCCCCCCSCCEEEEEECCCCEECSCSE-ETTEEECGGGTEECCCCSSCH
T ss_pred             EEEEEeCCCCccccccCCCHHHHHHHHHHHhhcccccceeeeeeEEeecccccccccc-cCCEEEEEecceecCCCcCcC
Confidence             111 11111    011111111111  000000000000    00011112233343 34899999 555556999999


Q ss_pred             hhhHHHHHHHHHHhhcc---------ccccccccc-------hhhhhheeeeEEeeecccccchhhHHHHHHhhh
Q psy9141         288 SLIVASLCQEKIEKMFD---------NTSTYKSRH-------INFIHRSYHLYTVDIGVHKVTESSILNLLLRGM  346 (379)
Q Consensus       288 ~n~gl~Da~~L~~~l~~---------~~~~~~~~~-------~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~  346 (379)
                      +|+|++|+.+|+++|.+         .+.+|++++       +.+++.+..+|+.+.++    -..+-|+++.-+
T Consensus       342 ~n~gl~DA~~La~~La~~~~g~~~~~lL~~Ye~eR~~~~~~~~~~s~~~~~l~~~~~~~----~~~lR~~~~~l~  412 (570)
T 3fmw_A          342 LNTGLQDAVNLGWKLAARVRGWGSEELLDTYHDERHPVAERVLLNTRAQLALMRPDEQH----TTPLRGFVEELL  412 (570)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSCTTT----HHHHHHHHHHHT
T ss_pred             HhHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchH----HHHHHHHHHHHh
Confidence            99999999999999865         345688775       44555555677664321    235566666654

>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}

Probab=99.96  E-value=3.4e-29  Score=244.07  Aligned_cols=150  Identities=20%  Similarity=0.273  Sum_probs=107.2

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhC---CCCc-ee
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAH---GIPM-RA   82 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~---~~~~-~~   82 (379)
                      .+|+||||||+||++|+.|+++|++|+||||++.+...  ..|.++  .++++++++|+++|+.+.+...   .... ..
T Consensus         2 m~V~IVGaGpaGl~~A~~L~~~G~~v~v~Er~~~~~~~--~~G~~i--~l~~~~~~~L~~lg~~~~~~~~~~~~~~~~~~   77 (412)
T 4hb9_A            2 MHVGIIGAGIGGTCLAHGLRKHGIKVTIYERNSAASSI--LPGYGI--HINSFGKQALQECLPAENWLAFEEASRYIGGQ   77 (412)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCSSCSS--CCCCEE--EECHHHHHHHHHHSCHHHHHHHHHHCEEECCC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCEEEEecCCCCCcC--CCceEE--eeCHHHHHHHHHcCChHHHHHhhhhhcccCcc
Confidence            37999999999999999999999999999999876543  235555  6889999999999987765431   1111 11


Q ss_pred             eEEEecCCcEEEeeC----------CCC---CcH----HHHhcCCCCeEEeCceEEEEEecCC-eEEEEEccCCceeEEE
Q psy9141          83 RMIHGQNGKLREIPY----------DPV---HNQ----VELEQYPDCNIYFQHKLINLDVNSG-NVTFYRTEDNSETKIT  144 (379)
Q Consensus        83 ~~~~~~~g~~~~~~~----------~~~---~~~----~~~~~~~gv~i~~~~~v~~i~~~~~-~v~v~~~~~G~~~~~i  144 (379)
                      ..+++..+.......          ...   ..+    ..+.+..+.+|++++++++++..++ +++++++ ||++   +
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~R~~L~~~L~~~~~~~v~~~~~v~~~~~~~~~~v~v~~~-dG~~---~  153 (412)
T 4hb9_A           78 SRFYNERMRLLAVHGGISPMAGKIISEQRLSISRTELKEILNKGLANTIQWNKTFVRYEHIENGGIKIFFA-DGSH---E  153 (412)
T ss_dssp             CEEECTTSCEEEC--------------CEEEEEHHHHHHHHHTTCTTTEECSCCEEEEEECTTSCEEEEET-TSCE---E
T ss_pred             eeEecCCcceecccCCccccccccccccceEeeHHHHHHHHHhhccceEEEEEEEEeeeEcCCCeEEEEEC-CCCE---E
Confidence            223333222211000          000   011    2333444567999999999987654 6899999 9988   9


Q ss_pred             eecEEEecCCCChHHHHHhh
Q psy9141         145 DNQLIIGADGAYSGVRKCLM  164 (379)
Q Consensus       145 ~adlVV~AdG~~S~vr~~l~  164 (379)
                      +||+||+|||.+|.+|+++.
T Consensus       154 ~adlvVgADG~~S~vR~~l~  173 (412)
T 4hb9_A          154 NVDVLVGADGSNSKVRKQYL  173 (412)
T ss_dssp             EESEEEECCCTTCHHHHHHS
T ss_pred             EeeEEEECCCCCcchHHHhC
Confidence            99999999999999999984

>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces}

Probab=99.96  E-value=2e-29  Score=253.31  Aligned_cols=280  Identities=14%  Similarity=0.076  Sum_probs=165.8

Q ss_pred             CCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeE
Q psy9141           5 SKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARM   84 (379)
Q Consensus         5 ~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~   84 (379)
                      +++||+||||||+||++|+.|+++|++|+||||.+.+...    ++++  .++++++++|+++|+++++... .+.....
T Consensus        11 ~~~dVlIVGaGpaGl~~A~~La~~G~~v~vlE~~~~~~~~----~r~~--~l~~~~~~~l~~lGl~~~~~~~-~~~~~~~   83 (499)
T 2qa2_A           11 SDASVIVVGAGPAGLMLAGELRLGGVDVMVLEQLPQRTGE----SRGL--GFTARTMEVFDQRGILPAFGPV-ETSTQGH   83 (499)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCSSCCCC----CCSE--EECHHHHHHHHHTTCGGGGCSC-CEESEEE
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCC----Ccee--EECHHHHHHHHHCCCHHHHHhc-cccccce
Confidence            4689999999999999999999999999999999876533    5554  6899999999999999887654 2222111


Q ss_pred             EEecCCcEEEeeCC-----C----CCcH--------HHHhcCCCCeEEeCceEEEEEecCCeEEEEEccCCc-eeEEEee
Q psy9141          85 IHGQNGKLREIPYD-----P----VHNQ--------VELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNS-ETKITDN  146 (379)
Q Consensus        85 ~~~~~g~~~~~~~~-----~----~~~~--------~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~-~~~~i~a  146 (379)
                      +   .+.  .+++.     .    ...+        +.+.+ .+++|+++++|++++++++++++++. +|+ +.+ ++|
T Consensus        84 ~---~~~--~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~-~gv~v~~~~~v~~i~~~~~~v~v~~~-~~~g~~~-~~a  155 (499)
T 2qa2_A           84 F---GGR--PVDFGVLEGAHYGVKAVPQSTTESVLEEWALG-RGAELLRGHTVRALTDEGDHVVVEVE-GPDGPRS-LTT  155 (499)
T ss_dssp             E---TTE--EEEGGGSTTCCCEEEEEEHHHHHHHHHHHHHH-TTCEEEESCEEEEEEECSSCEEEEEE-CSSCEEE-EEE
T ss_pred             e---cce--ecccccCCCCCCceEecCHHHHHHHHHHHHHh-CCCEEEcCCEEEEEEEeCCEEEEEEE-cCCCcEE-EEe
Confidence            1   111  11110     1    1122        22233 48999999999999999999998887 653 234 999


Q ss_pred             cEEEecCCCChHHHHHh-hhcCCCCccceeeeeeeEEEeeCCCCCccccccccceeee-cCCCCeEEEEEecCCCc--ee
Q psy9141         147 QLIIGADGAYSGVRKCL-MKQSMFNYSQTYIEHGYMELCIPPSEDNEVWLYKNRLLSS-VPEVRKRISLRAQSLKS--LM  222 (379)
Q Consensus       147 dlVV~AdG~~S~vr~~l-~~~~~~~~~~~~i~~~~~~~~~p~~~~~~~~~~p~~~~~~-~p~~~~~~~~~~~~~~~--~~  222 (379)
                      |+||+|||.+|.+|+++ ++.+...+.+.++.   ..+..+..+..        ...+ .|+  ..+.+.|...+.  +.
T Consensus       156 ~~vVgADG~~S~VR~~lg~~~~~~~~~~~~~~---~~v~~~~~~~~--------~~~~~~~~--g~~~~~P~~~g~~~~~  222 (499)
T 2qa2_A          156 RYVVGCDGGRSTVRKAAGFDFPGTSASREMFL---ADIRGCEITPR--------PIGETVPL--GMVMSAPLGDGVDRII  222 (499)
T ss_dssp             EEEEECCCTTCHHHHHTTCCCCEECCCCCEEE---EEEESCCCCCE--------EEEEEETT--EEEEEEECSSSCEEEE
T ss_pred             CEEEEccCcccHHHHHcCCCCCCCCCccEEEE---EEEEECCCCcc--------eEEEECCC--eEEEEEEcCCCEEEEE
Confidence            99999999999999998 55544444443321   12212110110        1111 122  233444443332  11


Q ss_pred             ee-cCCCC----CCChhhhcccc-----cccccccCCcc-cCCCccccCCCCCccccCCcEEEe-eecccCCCcchhhhh
Q psy9141         223 NF-PRADQ----GGDKRDCLLHE-----GTSRILVPNMR-LSNHLDRDQPCKPLLDFKNPIKIQ-SHAVVNEFYKQESLI  290 (379)
Q Consensus       223 ~~-p~~~~----~~~~~~~l~~~-----g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~liG-Ah~~~~P~~GQG~n~  290 (379)
                      .. +.+..    .....+.+...     +. ........ ...+.........|. ..|++|+| |++.++|+.|||+|+
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~a~~~~-~grv~L~GDAAH~~~P~~GqG~n~  300 (499)
T 2qa2_A          223 VCERGAPARRRTGPPPYQEVAAAWQRLTGQ-DISHGEPVWVSAFGDPARQVSAYR-RGRVLLAGDSAHVHLPAGGQGMNV  300 (499)
T ss_dssp             EEETTCCCCCCSSSCCHHHHHHHHHHHHSC-CCTTCEEEEEEEECCCEEECSCSE-ETTEEECGGGTEEECCCSSCHHHH
T ss_pred             EEecCCCCccccCCCCHHHHHHHHHHHhCC-CCCccceeEEEEEeCCcEEccccc-CCCEEEEecccccCCCccccchhh
Confidence            11 11110    00111111111     00 00000000 000011112234444 34899999 444445999999999


Q ss_pred             HHHHHHHHHHhhcc---------ccccccccch
Q psy9141         291 VASLCQEKIEKMFD---------NTSTYKSRHI  314 (379)
Q Consensus       291 gl~Da~~L~~~l~~---------~~~~~~~~~~  314 (379)
                      |++||.+|+++|.+         .+.+|++++.
T Consensus       301 gi~DA~~La~~La~~l~g~~~~~~L~~Ye~eR~  333 (499)
T 2qa2_A          301 SVQDSVNLGWKLAAVVSGRAPAGLLDTYHEERH  333 (499)
T ss_dssp             HHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence            99999999999865         3446877763

>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A*

Probab=99.96  E-value=1.9e-28  Score=249.00  Aligned_cols=294  Identities=16%  Similarity=0.119  Sum_probs=170.8

Q ss_pred             CCCCCCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCc
Q psy9141           1 MKCNSKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPM   80 (379)
Q Consensus         1 M~~m~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~   80 (379)
                      |+.+.++||+||||||+||++|+.|+++|++|+||||.+.....    ++++  .++++++++|+++|+++++.+.+.+.
T Consensus        21 M~~~~~~dVlIVGaGpaGl~~A~~La~~G~~V~vlEr~~~~~~~----~~~~--~l~~~~~~~l~~lGl~~~~~~~~~~~   94 (549)
T 2r0c_A           21 MNAPIETDVLILGGGPVGMALALDLAHRQVGHLVVEQTDGTITH----PRVG--TIGPRSMELFRRWGVAKQIRTAGWPG   94 (549)
T ss_dssp             -CCCEEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCSCCSS----CCCC--EECHHHHHHHHHTTCHHHHHTSSCCT
T ss_pred             cCCCCCCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCC----Ccee--eeCHHHHHHHHHcCChHHHHhhcCCc
Confidence            43344689999999999999999999999999999999866433    4444  68899999999999999998876665


Q ss_pred             ee---eEEE-ecCCcE-EEeeCCC------------C---CcH--------HHHhcCCCCeEEeCceEEEEEecCCeEEE
Q psy9141          81 RA---RMIH-GQNGKL-REIPYDP------------V---HNQ--------VELEQYPDCNIYFQHKLINLDVNSGNVTF  132 (379)
Q Consensus        81 ~~---~~~~-~~~g~~-~~~~~~~------------~---~~~--------~~~~~~~gv~i~~~~~v~~i~~~~~~v~v  132 (379)
                      ..   ..+. ...|.. ..+++..            .   ..+        +.+.+.    |+++++|+++++++++|++
T Consensus        95 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~a~~~----v~~~~~v~~~~~~~~~v~v  170 (549)
T 2r0c_A           95 DHPLDAAWVTRVGGHEVYRIPLGTADTRATPEHTPEPDAICPQHWLAPLLAEAVGER----LRTRSRLDSFEQRDDHVRA  170 (549)
T ss_dssp             TSBCCEEEESSBTSCEEEEECCCBTTTSCCCSSCSSCCEECCHHHHHHHHHHHHGGG----EECSEEEEEEEECSSCEEE
T ss_pred             ccccceEEeccCCCceeEeecccccccccccCCCCCcccccCHHHHHHHHHHHHHHh----cccCcEEEEEEEeCCEEEE
Confidence            32   1222 222322 2222210            0   112        122221    9999999999999999888


Q ss_pred             EEccC---CceeEEEeecEEEecCCCChHHHHHh-hhcCCCCccceeeeeeeEEEeeCCCCCccccccccceeee-cCCC
Q psy9141         133 YRTED---NSETKITDNQLIIGADGAYSGVRKCL-MKQSMFNYSQTYIEHGYMELCIPPSEDNEVWLYKNRLLSS-VPEV  207 (379)
Q Consensus       133 ~~~~~---G~~~~~i~adlVV~AdG~~S~vr~~l-~~~~~~~~~~~~i~~~~~~~~~p~~~~~~~~~~p~~~~~~-~p~~  207 (379)
                      ++. +   |+..+ ++||+||+|||.+|.+|+++ ++.....+.+.++.   ..+..+. ....+...+...+.+ .|+.
T Consensus       171 ~~~-~~~~G~~~~-i~a~~vVgADG~~S~vR~~lg~~~~g~~~~~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~p~~  244 (549)
T 2r0c_A          171 TIT-DLRTGATRA-VHARYLVACDGASSPTRKALGIDAPPRHRTQVFRN---ILFRAPE-LRSLLGERAALFFFLMLSSS  244 (549)
T ss_dssp             EEE-ETTTCCEEE-EEEEEEEECCCTTCHHHHHHTCCCCBSSCCEEEEE---EEEECTT-HHHHHGGGCCSEEEEEEETT
T ss_pred             EEE-ECCCCCEEE-EEeCEEEECCCCCcHHHHHcCCCCCCCcccceEEE---EEEECCc-hHHhcCCCCceEEEEECCCC
Confidence            876 4   75445 99999999999999999998 56555555544321   1121221 000000011112222 1221


Q ss_pred             CeEEEEEecCCCceee--ecCCC--C-CCChhhhcccc-cccccccCCc-ccCCCccccCCCCCccccCCcEEEe-eecc
Q psy9141         208 RKRISLRAQSLKSLMN--FPRAD--Q-GGDKRDCLLHE-GTSRILVPNM-RLSNHLDRDQPCKPLLDFKNPIKIQ-SHAV  279 (379)
Q Consensus       208 ~~~~~~~~~~~~~~~~--~p~~~--~-~~~~~~~l~~~-g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~liG-Ah~~  279 (379)
                       ..+.+.+...+..+.  +|.+.  . .++..+.+... +. .. ..+. ...........+..|. ..|+.++| |++.
T Consensus       245 -~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~-~~~~~~~~~~~~~~~~a~~~~-~grv~L~GDAAH~  320 (549)
T 2r0c_A          245 -LRFPLRALDGRGLYRLTVGVDDASKSTMDSFELVRRAVAF-DT-EIEVLSDSEWHLTHRVADSFS-AGRVFLTGDAAHT  320 (549)
T ss_dssp             -EEEEEEESSSSSEEEEEEECSTTCCSCCCHHHHHHHHBCS-CC-CCEEEEEEEEEECCEECSCSE-ETTEEECGGGTEE
T ss_pred             -cEEEEEEECCCcEEEEEecCCCCCCCHHHHHHHHHHHhCC-CC-ceeEEEEecchhHhhhHHhhc-CCcEEEEcccccc
Confidence             123334433222221  12211  1 11111111111 00 00 0000 0000011112233444 34899999 4444


Q ss_pred             cCCCcchhhhhHHHHHHHHHHhhcc---------ccccccccch
Q psy9141         280 VNEFYKQESLIVASLCQEKIEKMFD---------NTSTYKSRHI  314 (379)
Q Consensus       280 ~~P~~GQG~n~gl~Da~~L~~~l~~---------~~~~~~~~~~  314 (379)
                      ++|+.|||+|+|++||.+|+++|.+         .+.+|++++.
T Consensus       321 ~~P~~GqG~n~gi~DA~~La~~La~~l~g~a~~~lL~~Y~~eR~  364 (549)
T 2r0c_A          321 LSPSGGFGMNTGIGSAADLGWKLAATLRGWAGPGLLATYEEERR  364 (549)
T ss_dssp             CCCGGGHHHHHHHHHHHHHHHHHHHHHHTCSCTTTTHHHHHHHH
T ss_pred             CCCccCCccccccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence            5599999999999999999999864         4556887763

>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces}

Probab=99.96  E-value=2.5e-29  Score=252.64  Aligned_cols=285  Identities=13%  Similarity=0.065  Sum_probs=166.2

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceee
Q psy9141           4 NSKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRAR   83 (379)
Q Consensus         4 m~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~   83 (379)
                      .+++||+||||||+||++|+.|+++|++|+||||.+.+...    ++++  .++++++++|+++|+++++... .+....
T Consensus         9 ~~~~dVlIVGaGpaGl~~A~~La~~G~~v~vlE~~~~~~~~----~r~~--~l~~~~~~~l~~lGl~~~~~~~-~~~~~~   81 (500)
T 2qa1_A            9 RSDAAVIVVGAGPAGMMLAGELRLAGVEVVVLERLVERTGE----SRGL--GFTARTMEVFDQRGILPRFGEV-ETSTQG   81 (500)
T ss_dssp             CSBCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCCC-CCC----CCSE--EECHHHHHHHHTTTCGGGGCSC-CBCCEE
T ss_pred             cCCCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCC----CCcc--eECHHHHHHHHHCCCHHHHHhc-cccccc
Confidence            35689999999999999999999999999999999866533    5554  6899999999999999987654 222211


Q ss_pred             EEEecCCcEEEe-------eCCCCCcH--------HHHhcCCCCeEEeCceEEEEEecCCeEEEEEccCCc-eeEEEeec
Q psy9141          84 MIHGQNGKLREI-------PYDPVHNQ--------VELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNS-ETKITDNQ  147 (379)
Q Consensus        84 ~~~~~~g~~~~~-------~~~~~~~~--------~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~-~~~~i~ad  147 (379)
                      .+   .+.....       ++.....+        +.+.+ .+++|+++++|++++++++++++++. +|+ ..+ ++||
T Consensus        82 ~~---~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~-~gv~v~~~~~v~~i~~~~~~v~v~~~-~~~g~~~-~~a~  155 (500)
T 2qa1_A           82 HF---GGLPIDFGVLEGAWQAAKTVPQSVTETHLEQWATG-LGADIRRGHEVLSLTDDGAGVTVEVR-GPEGKHT-LRAA  155 (500)
T ss_dssp             EE---TTEEEEGGGSTTGGGCEEEEEHHHHHHHHHHHHHH-TTCEEEETCEEEEEEEETTEEEEEEE-ETTEEEE-EEES
T ss_pred             cc---cceecccccCCCCCCceeecCHHHHHHHHHHHHHH-CCCEEECCcEEEEEEEcCCeEEEEEE-cCCCCEE-EEeC
Confidence            11   1111100       01011122        22233 48999999999999999999998887 553 234 9999


Q ss_pred             EEEecCCCChHHHHHh-hhcCCCCccceeeeeeeEEEeeCCCCCccccccccceeee-cCCCCeEEEEEecCCCc--eee
Q psy9141         148 LIIGADGAYSGVRKCL-MKQSMFNYSQTYIEHGYMELCIPPSEDNEVWLYKNRLLSS-VPEVRKRISLRAQSLKS--LMN  223 (379)
Q Consensus       148 lVV~AdG~~S~vr~~l-~~~~~~~~~~~~i~~~~~~~~~p~~~~~~~~~~p~~~~~~-~p~~~~~~~~~~~~~~~--~~~  223 (379)
                      +||+|||.+|.+|+++ ++.+...+.+.++.   ..+..+..+..        ...+ .|+  ..+.+.|...+.  +..
T Consensus       156 ~vVgADG~~S~VR~~lg~~~~~~~~~~~~~~---~~~~~~~~~~~--------~~~~~~~~--g~~~~~p~~~g~~~~~~  222 (500)
T 2qa1_A          156 YLVGCDGGRSSVRKAAGFDFPGTAATMEMYL---ADIKGVELQPR--------MIGETLPG--GMVMVGPLPGGITRIIV  222 (500)
T ss_dssp             EEEECCCTTCHHHHHTTCCCCEECCCCEEEE---EEEESCCCCCE--------EEEEEETT--EEEEEEEETTTEEEEEE
T ss_pred             EEEECCCcchHHHHHcCCCcCCCccceEEEE---EEEEeCCCCCc--------eEEEECCC--cEEEEEEcCCCEEEEEE
Confidence            9999999999999998 55544444443321   12212110110        1111 122  223444443332  111


Q ss_pred             e-cCCCC----CCChhhhcccc-----cccccccCCcc-cCCCccccCCCCCccccCCcEEEe-eecccCCCcchhhhhH
Q psy9141         224 F-PRADQ----GGDKRDCLLHE-----GTSRILVPNMR-LSNHLDRDQPCKPLLDFKNPIKIQ-SHAVVNEFYKQESLIV  291 (379)
Q Consensus       224 ~-p~~~~----~~~~~~~l~~~-----g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~liG-Ah~~~~P~~GQG~n~g  291 (379)
                      . +.+..    .....+.+...     +. ........ ...+.........|. ..|++|+| |++.++|+.|||+|+|
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~a~~~~-~grv~L~GDAAH~~~P~~GqG~n~g  300 (500)
T 2qa1_A          223 CERGTPPQRRETPPSWHEVADAWKRLTGD-DIAHAEPVWVSAFGNATRQVTEYR-RGRVILAGDSAHIHLPAGGQGMNTS  300 (500)
T ss_dssp             EETTCCC-----CCCHHHHHHHHHHHHSC-CCTTSEEEEEEEEECCEEECSCSE-ETTEEECGGGTEECCCCSSCHHHHH
T ss_pred             EcCCCCCccccCCCCHHHHHHHHHHhcCC-CCCccceeEEEEeccCcEEccccc-cCCEEEEEccccCCCCccccchhhh
Confidence            1 11110    00111111110     00 00000000 000011112234444 34899999 4444559999999999


Q ss_pred             HHHHHHHHHhhcc---------ccccccccchhh
Q psy9141         292 ASLCQEKIEKMFD---------NTSTYKSRHINF  316 (379)
Q Consensus       292 l~Da~~L~~~l~~---------~~~~~~~~~~~~  316 (379)
                      ++|+.+|+++|.+         .+.+|++++...
T Consensus       301 i~DA~~La~~La~~~~g~~~~~~L~~Y~~eR~~~  334 (500)
T 2qa1_A          301 IQDAVNLGWKLGAVVNGTATEELLDSYHSERHAV  334 (500)
T ss_dssp             HHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHH
Confidence            9999999999865         344687776433

>1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A*

Probab=99.96  E-value=3.5e-29  Score=259.42  Aligned_cols=306  Identities=17%  Similarity=0.158  Sum_probs=178.9

Q ss_pred             CCcEEEECCChHHHHHHHHHHh-----CCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCc
Q psy9141           6 KKSVVIVGGGLVGSLSACMFAK-----NQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPM   80 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La~-----~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~   80 (379)
                      ++||+||||||+||++|+.|++     .|++|+||||.+.+...    |+++  +++++++++|+++|+++++...+.++
T Consensus         8 ~~dVlIVGaGpaGL~lA~~La~~~~~~~Gi~v~viE~~~~~~~~----gra~--~l~~~tle~l~~lGl~~~l~~~~~~~   81 (665)
T 1pn0_A            8 YCDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTKVYN----GQAD--GLQCRTLESLKNLGLADKILSEANDM   81 (665)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSSCCCS----CSCC--EECHHHHHHHHTTTCHHHHHTTCBCC
T ss_pred             CCcEEEECcCHHHHHHHHHHhccccccCCCCEEEEeCCCCCCCC----Ccee--EEChHHHHHHHHCCCHHHHHHhcccc
Confidence            5899999999999999999999     99999999999765433    6665  68999999999999999999888888


Q ss_pred             eeeEEEecC--CcEE---EeeC---C--CC----CcH--------HHHhcCC--CCeEEeCceEEEEEecC--------C
Q psy9141          81 RARMIHGQN--GKLR---EIPY---D--PV----HNQ--------VELEQYP--DCNIYFQHKLINLDVNS--------G  128 (379)
Q Consensus        81 ~~~~~~~~~--g~~~---~~~~---~--~~----~~~--------~~~~~~~--gv~i~~~~~v~~i~~~~--------~  128 (379)
                      ..+.+++.+  +...   .++.   .  ..    .+|        +.+.+..  +++|++++++++++.++        .
T Consensus        82 ~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~l~q~~le~~L~~~~~~~g~~~v~v~~g~~v~~~~~d~~~~~~~~~~  161 (665)
T 1pn0_A           82 STIALYNPDENGHIRRTDRIPDTLPGISRYHQVVLHQGRIERRILDSIAEISDTRIKVERPLIPEKMEIDSSKAEDPEAY  161 (665)
T ss_dssp             CEEEEEEECTTSCEEEEEEEESSCTTSCSSCCEECCHHHHHHHHHHHHHHHHTTSSCEECSEEEEEEEECGGGTTCTTCC
T ss_pred             ceEEEEeCCCCcceEeecccCcccCCCCCCeeEEeeHHHHHHHHHHHHHhcCCCceEEEeCCEEEEEEecCcccccCCCC
Confidence            888887754  2221   1111   0  00    122        2222222  48999999999998875        4


Q ss_pred             eEEEEEc-----------------------------------------cCCceeEEEeecEEEecCCCChHHHHHh-hhc
Q psy9141         129 NVTFYRT-----------------------------------------EDNSETKITDNQLIIGADGAYSGVRKCL-MKQ  166 (379)
Q Consensus       129 ~v~v~~~-----------------------------------------~~G~~~~~i~adlVV~AdG~~S~vr~~l-~~~  166 (379)
                      +|++++.                                         .+|+..+ ++||+||+|||++|.+|+++ ++.
T Consensus       162 ~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~~~~~~~~~~G~~~~-i~A~~VVGADG~~S~VR~~lg~~~  240 (665)
T 1pn0_A          162 PVTMTLRYMSEDESTPLQFGHKTENGLFRSNLQTQEEEDANYRLPEGKEAGEIET-VHCKYVIGCDGGHSWVRRTLGFEM  240 (665)
T ss_dssp             CEEEEEEECCGGGSCCCTTCCCCCSSSCCCHHHHHHHHHTSCCCSTTCCTTCEEE-EEEEEEEECCCTTCHHHHHHTCCC
T ss_pred             CEEEEEEecccccccccccccccccccccccccccccccccccccccCCCCceEE-EEeCEEEeccCCCCHHHHhcCCCC
Confidence            6777653                                         1454445 99999999999999999998 444


Q ss_pred             CCCCccceeeeeeeEEEee-CCCCCccccccccceeeecCCCCeEEEEEecCCCce--e-eecCCC-------CCCChhh
Q psy9141         167 SMFNYSQTYIEHGYMELCI-PPSEDNEVWLYKNRLLSSVPEVRKRISLRAQSLKSL--M-NFPRAD-------QGGDKRD  235 (379)
Q Consensus       167 ~~~~~~~~~i~~~~~~~~~-p~~~~~~~~~~p~~~~~~~p~~~~~~~~~~~~~~~~--~-~~p~~~-------~~~~~~~  235 (379)
                      .+..+...   +.+..+.. ...+...     .......... ..+.+.|...+.+  + .++...       ......+
T Consensus       241 ~g~~~~~~---~~v~d~~~~~~~p~~~-----~~~~~~~~~~-g~~~~~P~~~~~~r~~~~~~~~~~~~~~~~~~~~t~e  311 (665)
T 1pn0_A          241 IGEQTDYI---WGVLDAVPASNFPDIR-----SRCAIHSAES-GSIMIIPRENNLVRFYVQLQARAEKGGRVDRTKFTPE  311 (665)
T ss_dssp             EEEEEEEE---EEEEEEEEECCCTTTT-----SEEEEECSSS-CEEEEEECSTTCEEEEEEECC----------CCCCHH
T ss_pred             CCCCccEE---EEEEEEEECCCCCCcc-----eEEEEEeCCC-ceEEEEEcCCCEEEEEEEeCCccccccccCcCCCCHH
Confidence            33333222   12222211 0000000     0001111111 2344444443311  1 112211       0001111


Q ss_pred             hcccc-----cccccccCCcc-cCCCccccCCCCCccccCCcEEEe-eecccCCCcchhhhhHHHHHHHHHHhhcc----
Q psy9141         236 CLLHE-----GTSRILVPNMR-LSNHLDRDQPCKPLLDFKNPIKIQ-SHAVVNEFYKQESLIVASLCQEKIEKMFD----  304 (379)
Q Consensus       236 ~l~~~-----g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~liG-Ah~~~~P~~GQG~n~gl~Da~~L~~~l~~----  304 (379)
                      .+.+.     +.+........ ...+......+..|....|++|+| |++.++|++|||||+||+|+.+|+++|..    
T Consensus       312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~a~~~~~~gRV~L~GDAAH~~~P~~GqG~N~gi~DA~nLawkLa~vl~g  391 (665)
T 1pn0_A          312 VVIANAKKIFHPYTFDVQQLDWFTAYHIGQRVTEKFSKDERVFIAGDACHTHSPKAGQGMNTSMMDTYNLGWKLGLVLTG  391 (665)
T ss_dssp             HHHHHHHHHHTTSCCEEEEEEEEEEEEEEEEECSCSEETTTEEECGGGTEECCSTTCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhCcccCceeeEEEEEeeeccceehhhcccCCCEEEEECccccCCCcccCCcchhHHHHHHHHHHHHHHHcC
Confidence            11111     00000000000 000011112334454235899999 44445599999999999999999998864    


Q ss_pred             -----ccccccccc-------hhhhhheeeeEEee
Q psy9141         305 -----NTSTYKSRH-------INFIHRSYHLYTVD  327 (379)
Q Consensus       305 -----~~~~~~~~~-------~~~~~~~~~~~t~~  327 (379)
                           .|.+|++++       +.+++.+.++|+..
T Consensus       392 ~a~~~lL~tYe~eR~p~a~~~i~~s~~~~~l~~~~  426 (665)
T 1pn0_A          392 RAKRDILKTYEEERQPFAQALIDFDHQFSRLFSGR  426 (665)
T ss_dssp             CBCGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence                 455687775       44455555566543

>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2

Probab=99.96  E-value=2e-28  Score=239.04  Aligned_cols=152  Identities=23%  Similarity=0.287  Sum_probs=118.4

Q ss_pred             CCCCCCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCc
Q psy9141           1 MKCNSKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPM   80 (379)
Q Consensus         1 M~~m~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~   80 (379)
                      |+ |+++||+||||||+|+++|+.|++.|++|+|+|+.+....   ..++++  .+++++.++|+++|+++  ...+.+.
T Consensus         1 M~-~~~~~V~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~---~~~~g~--~l~~~~~~~l~~~g~~~--~~~~~~~   72 (397)
T 2vou_A            1 MS-PTTDRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQPLS---GFGTGI--VVQPELVHYLLEQGVEL--DSISVPS   72 (397)
T ss_dssp             -C-CCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCC---CCSCEE--ECCHHHHHHHHHTTCCG--GGTCBCC
T ss_pred             CC-CCCCcEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCCC---cccccc--ccChhHHHHHHHcCCcc--ccccccc
Confidence            55 5678999999999999999999999999999999876421   225554  68899999999999987  4456677


Q ss_pred             eeeEEEec-CCcEE-EeeCCCCC-cH-----HHHhcCCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEEEec
Q psy9141          81 RARMIHGQ-NGKLR-EIPYDPVH-NQ-----VELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGA  152 (379)
Q Consensus        81 ~~~~~~~~-~g~~~-~~~~~~~~-~~-----~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlVV~A  152 (379)
                      ....+++. ++... ..++.... ..     ......++++|+++++|++++.+++++++++. +|++   ++||+||+|
T Consensus        73 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~-~g~~---~~ad~vV~A  148 (397)
T 2vou_A           73 SSMEYVDALTGERVGSVPADWRFTSYDSIYGGLYELFGPERYHTSKCLVGLSQDSETVQMRFS-DGTK---AEANWVIGA  148 (397)
T ss_dssp             CEEEEEETTTCCEEEEEECCCCEEEHHHHHHHHHHHHCSTTEETTCCEEEEEECSSCEEEEET-TSCE---EEESEEEEC
T ss_pred             cceEEEecCCCCccccccCcccccCHHHHHHHHHHhCCCcEEEcCCEEEEEEecCCEEEEEEC-CCCE---EECCEEEEC
Confidence            77777776 66542 22222111 11     11122368999999999999999999999998 8887   999999999


Q ss_pred             CCCChHHHHHhh
Q psy9141         153 DGAYSGVRKCLM  164 (379)
Q Consensus       153 dG~~S~vr~~l~  164 (379)
                      ||.+|.+|+.+.
T Consensus       149 dG~~S~vr~~~~  160 (397)
T 2vou_A          149 DGGASVVRKRLL  160 (397)
T ss_dssp             CCTTCHHHHHHH
T ss_pred             CCcchhHHHHhc
Confidence            999999999886

>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens}

Probab=99.96  E-value=1e-28  Score=250.35  Aligned_cols=162  Identities=22%  Similarity=0.275  Sum_probs=119.0

Q ss_pred             CCCCCCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCc
Q psy9141           1 MKCNSKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPM   80 (379)
Q Consensus         1 M~~m~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~   80 (379)
                      |+ +.++||+||||||+||++|+.|+++|++|+||||.+.....    +++.  .++++++++|+++|+++.+...+.+.
T Consensus         1 M~-~~~~dVlIVGaG~aGl~~A~~La~~G~~v~viEr~~~~~~~----~~~~--~l~~~~~~~l~~lGl~~~~~~~~~~~   73 (535)
T 3ihg_A            1 MN-DHEVDVLVVGAGLGGLSTAMFLARQGVRVLVVERRPGLSPY----PRAA--GQNPRTMELLRIGGVADEVVRADDIR   73 (535)
T ss_dssp             CC-CCSEEEEEECCSHHHHHHHHHHHTTTCCEEEECSSSSCCCC----CCSC--CBCHHHHHHHHHTTCHHHHHHSCCSS
T ss_pred             CC-CccCcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCC----Cccc--eECHHHHHHHHHcCCHHHHHhhCCCc
Confidence            55 34689999999999999999999999999999999876543    4544  68999999999999999998877655


Q ss_pred             eee------EEEecCCcEEE-----e-----------eC-CCCCcH--------HHHhcCCCCeEEeCceEEEEEecCC-
Q psy9141          81 RAR------MIHGQNGKLRE-----I-----------PY-DPVHNQ--------VELEQYPDCNIYFQHKLINLDVNSG-  128 (379)
Q Consensus        81 ~~~------~~~~~~g~~~~-----~-----------~~-~~~~~~--------~~~~~~~gv~i~~~~~v~~i~~~~~-  128 (379)
                      ...      ......+....     +           +. .....+        +.+.+ .|++|+++++|++++.+++ 
T Consensus        74 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~a~~-~gv~i~~~~~v~~i~~~~~~  152 (535)
T 3ihg_A           74 GTQGDFVIRLAESVRGEILRTVSESFDDMVAATEPCTPAGWAMLSQDKLEPILLAQARK-HGGAIRFGTRLLSFRQHDDD  152 (535)
T ss_dssp             CTTSCCEEEEESSSSSCEEEEEESCHHHHHHTTGGGCSCCCBCCCHHHHHHHHHHHHHH-TTCEEESSCEEEEEEEECGG
T ss_pred             ccccceeeeEEeccCCceeeeccccccccccccccCCCCcccccCHHHHHHHHHHHHHh-CCCEEEeCCEEEEEEECCCC
Confidence            432      22222232211     0           11 111122        23333 4899999999999999988 


Q ss_pred             ---eEEEEEccCCc-eeEEEeecEEEecCCCChHHHHHh-hhcCCCCcc
Q psy9141         129 ---NVTFYRTEDNS-ETKITDNQLIIGADGAYSGVRKCL-MKQSMFNYS  172 (379)
Q Consensus       129 ---~v~v~~~~~G~-~~~~i~adlVV~AdG~~S~vr~~l-~~~~~~~~~  172 (379)
                         ++++++. ++. ..+ ++||+||+|||.+|.+|+++ ++.....+.
T Consensus       153 ~~~~v~v~~~-~~~~~~~-i~a~~vV~AdG~~S~vR~~lgi~~~~~~~~  199 (535)
T 3ihg_A          153 AGAGVTARLA-GPDGEYD-LRAGYLVGADGNRSLVRESLGIGRYGHGTL  199 (535)
T ss_dssp             GCSEEEEEEE-ETTEEEE-EEEEEEEECCCTTCHHHHHTTCCEEEEEEE
T ss_pred             ccccEEEEEE-cCCCeEE-EEeCEEEECCCCcchHHHHcCCCcCCCCcc
Confidence               8988877 541 234 99999999999999999998 555444443

>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A*

Probab=99.96  E-value=5.6e-28  Score=236.82  Aligned_cols=152  Identities=21%  Similarity=0.268  Sum_probs=115.7

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHhCCCc-EEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCcee
Q psy9141           4 NSKKSVVIVGGGLVGSLSACMFAKNQYE-VNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRA   82 (379)
Q Consensus         4 m~~~dVvIVGaGpaGl~~A~~La~~G~~-V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~   82 (379)
                      |+++||+||||||+||++|+.|++.|++ |+||||.+.+...    ++++  .+++++.++|+++|+++.+...+.+...
T Consensus         2 ~~~~dVvIVGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~~~~----g~g~--~l~~~~~~~l~~lg~~~~l~~~~~~~~~   75 (410)
T 3c96_A            2 SEPIDILIAGAGIGGLSCALALHQAGIGKVTLLESSSEIRPL----GVGI--NIQPAAVEALAELGLGPALAATAIPTHE   75 (410)
T ss_dssp             --CCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSSCCCC----SCEE--EECHHHHHHHHHTTCHHHHHHHSEEECE
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHhCCCCeEEEEECCCCcccc----eeEE--EEChHHHHHHHHCCChHHHHhhCCCcce
Confidence            4578999999999999999999999999 9999998865432    5655  6889999999999999999877777777


Q ss_pred             eEEEecCCcEE-Eee------CCCC---CcH--------HHHhcC-CCCeEEeCceEEEEEecCCeEEEEEccC---Cce
Q psy9141          83 RMIHGQNGKLR-EIP------YDPV---HNQ--------VELEQY-PDCNIYFQHKLINLDVNSGNVTFYRTED---NSE  140 (379)
Q Consensus        83 ~~~~~~~g~~~-~~~------~~~~---~~~--------~~~~~~-~gv~i~~~~~v~~i~~~~~~v~v~~~~~---G~~  140 (379)
                      +.+++..|... ..+      +...   ..+        ..+.+. ..++|+++++|++++. ++++++++. +   |+.
T Consensus        76 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~g~~~v~~~~~v~~i~~-~~~v~v~~~-~~~~g~~  153 (410)
T 3c96_A           76 LRYIDQSGATVWSEPRGVEAGNAYPQYSIHRGELQMILLAAVRERLGQQAVRTGLGVERIEE-RDGRVLIGA-RDGHGKP  153 (410)
T ss_dssp             EEEECTTSCEEEEEECGGGGTCSSCEEEEEHHHHHHHHHHHHHHHHCTTSEEESEEEEEEEE-ETTEEEEEE-EETTSCE
T ss_pred             EEEEcCCCCEEeeccCCccccCCCCeeeeeHHHHHHHHHHHHHhhCCCcEEEECCEEEEEec-CCccEEEEe-cCCCCCc
Confidence            77776665532 111      1111   011        222221 2368999999999998 777888776 5   743


Q ss_pred             eEEEeecEEEecCCCChHHHHHhh
Q psy9141         141 TKITDNQLIIGADGAYSGVRKCLM  164 (379)
Q Consensus       141 ~~~i~adlVV~AdG~~S~vr~~l~  164 (379)
                      .+ ++||+||+|||.+|.+|+++.
T Consensus       154 ~~-~~ad~vV~AdG~~S~vR~~l~  176 (410)
T 3c96_A          154 QA-LGADVLVGADGIHSAVRAHLH  176 (410)
T ss_dssp             EE-EEESEEEECCCTTCHHHHHHC
T ss_pred             eE-EecCEEEECCCccchhHHHhc
Confidence            44 999999999999999999984

>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa}

Probab=99.95  E-value=3.2e-28  Score=237.49  Aligned_cols=150  Identities=20%  Similarity=0.294  Sum_probs=118.5

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceee
Q psy9141           4 NSKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRAR   83 (379)
Q Consensus         4 m~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~   83 (379)
                      +.++||+||||||+|+++|+.|+++|++|+|+|+.+....    .++++  .+++++.++|+++|+++.+...+.+....
T Consensus         4 ~~~~dVvIVGaG~aGl~~A~~L~~~G~~V~viE~~~~~~~----~~~~~--~l~~~~~~~l~~~g~~~~~~~~~~~~~~~   77 (399)
T 2x3n_A            4 DNHIDVLINGCGIGGAMLAYLLGRQGHRVVVVEQARRERA----INGAD--LLKPAGIRVVEAAGLLAEVTRRGGRVRHE   77 (399)
T ss_dssp             -CEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCCC-------CCCC--EECHHHHHHHHHTTCHHHHHHTTCEEECE
T ss_pred             CCcCCEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCCCCc----cCcee--eECchHHHHHHHcCcHHHHHHhCCCccee
Confidence            3468999999999999999999999999999999876532    24444  68899999999999999998777777777


Q ss_pred             EEEecCCcE-EEeeCCCC--------CcH--------HHHhcCCCCeEEeCceEEEEEecCCeE--EEEEccCCceeEEE
Q psy9141          84 MIHGQNGKL-REIPYDPV--------HNQ--------VELEQYPDCNIYFQHKLINLDVNSGNV--TFYRTEDNSETKIT  144 (379)
Q Consensus        84 ~~~~~~g~~-~~~~~~~~--------~~~--------~~~~~~~gv~i~~~~~v~~i~~~~~~v--~v~~~~~G~~~~~i  144 (379)
                      .+++.++.. ..+++...        ..+        +.+.+.++++++++++|++++.+++++  .+++. +|++   +
T Consensus        78 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~v~g~v~~~-~g~~---~  153 (399)
T 2x3n_A           78 LEVYHDGELLRYFNYSSVDARGYFILMPCESLRRLVLEKIDGEATVEMLFETRIEAVQRDERHAIDQVRLN-DGRV---L  153 (399)
T ss_dssp             EEEEETTEEEEEEETTSSCGGGCEEECCHHHHHHHHHHHHTTCTTEEEECSCCEEEEEECTTSCEEEEEET-TSCE---E
T ss_pred             EEEeCCCCEEEecchHHhcccCccccccHHHHHHHHHHHhhhcCCcEEEcCCEEEEEEEcCCceEEEEEEC-CCCE---E
Confidence            777766642 23333211        111        233333489999999999999988888  88888 8876   9


Q ss_pred             eecEEEecCCCChHHHHHh
Q psy9141         145 DNQLIIGADGAYSGVRKCL  163 (379)
Q Consensus       145 ~adlVV~AdG~~S~vr~~l  163 (379)
                      +||+||+|||.+|.+|+.+
T Consensus       154 ~ad~vV~AdG~~s~vr~~l  172 (399)
T 2x3n_A          154 RPRVVVGADGIASYVRRRL  172 (399)
T ss_dssp             EEEEEEECCCTTCHHHHHT
T ss_pred             ECCEEEECCCCChHHHHHh
Confidence            9999999999999999987

>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A*

Probab=99.95  E-value=2.1e-27  Score=230.33  Aligned_cols=316  Identities=16%  Similarity=0.094  Sum_probs=183.2

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceee
Q psy9141           4 NSKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRAR   83 (379)
Q Consensus         4 m~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~   83 (379)
                      |+.+||+||||||+|+++|+.|++.|++|+|+|+.+.+...    ++++  .+++++.++|+++|+++.+...+.+....
T Consensus         9 m~~~dVvIVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~----~~~~--~l~~~~~~~l~~~g~~~~~~~~~~~~~~~   82 (379)
T 3alj_A            9 GKTRRAEVAGGGFAGLTAAIALKQNGWDVRLHEKSSELRAF----GAGI--YLWHNGLRVLEGLGALDDVLQGSHTPPTY   82 (379)
T ss_dssp             --CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSCCCC----SSEE--EEEHHHHHHHHHTTCHHHHHTTCBCCSCE
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCCC----CceE--EeCccHHHHHHHcCCHHHHHhhCCCccce
Confidence            56789999999999999999999999999999998866432    5554  67899999999999999998888788777


Q ss_pred             EEEecCCcEE-EeeC-CCC---CcH--------HHHhcCCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEEE
Q psy9141          84 MIHGQNGKLR-EIPY-DPV---HNQ--------VELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLII  150 (379)
Q Consensus        84 ~~~~~~g~~~-~~~~-~~~---~~~--------~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlVV  150 (379)
                      .+++. |... ..++ ...   ..+        +.+.+ .|++++++++|++++. + + ++++. +|++   ++||+||
T Consensus        83 ~~~~~-g~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~-~gv~i~~~~~v~~i~~-~-~-~v~~~-~g~~---~~ad~vV  153 (379)
T 3alj_A           83 ETWMH-NKSVSKETFNGLPWRIMTRSHLHDALVNRARA-LGVDISVNSEAVAADP-V-G-RLTLQ-TGEV---LEADLIV  153 (379)
T ss_dssp             EEEET-TEEEEEECGGGCCEEEEEHHHHHHHHHHHHHH-TTCEEESSCCEEEEET-T-T-EEEET-TSCE---EECSEEE
T ss_pred             EEEeC-CceeeeccCCCCceEEECHHHHHHHHHHHHHh-cCCEEEeCCEEEEEEe-C-C-EEEEC-CCCE---EEcCEEE
Confidence            77776 5432 2222 111   011        22333 5899999999999987 3 3 77787 8876   9999999


Q ss_pred             ecCCCChHHHHHhhhcCCCCccceeeeeeeEEEeeCCCCC-cccccccc-ceee--ecCCCCeEEEEEecCCCceee---
Q psy9141         151 GADGAYSGVRKCLMKQSMFNYSQTYIEHGYMELCIPPSED-NEVWLYKN-RLLS--SVPEVRKRISLRAQSLKSLMN---  223 (379)
Q Consensus       151 ~AdG~~S~vr~~l~~~~~~~~~~~~i~~~~~~~~~p~~~~-~~~~~~p~-~~~~--~~p~~~~~~~~~~~~~~~~~~---  223 (379)
                      +|||.+|.+|+++.......+    .....+....+.... .+.. .+. ....  ++... ..+.+.|...+...+   
T Consensus       154 ~AdG~~s~vr~~l~~~~~~~~----~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~p~~~~~~~~~~~  227 (379)
T 3alj_A          154 GADGVGSKVRDSIGFKQDRWV----SKDGLIRLIVPRMKKELGHG-EWDNTIDMWNFWPRV-QRILYSPCNENELYLGLM  227 (379)
T ss_dssp             ECCCTTCHHHHHHCCCEEEEE----EEEEEEEEEEECCHHHHCSS-CTTSEEEEECCSSSC-CEEEEEECSSSEEEEEEE
T ss_pred             ECCCccHHHHHHhcCCCCcCc----CCcEEEEEEechhhccCCcC-CcccccccceEECCC-CEEEEEECCCCcEEEEEE
Confidence            999999999998843111111    111112222221000 0000 011 1111  12222 234455555443322   


Q ss_pred             ecCCC-CCCChhhhcccc-cccc---cccCCcccCC---C-ccccCCCCCccccCCcEEEe-eecccCCCcchhhhhHHH
Q psy9141         224 FPRAD-QGGDKRDCLLHE-GTSR---ILVPNMRLSN---H-LDRDQPCKPLLDFKNPIKIQ-SHAVVNEFYKQESLIVAS  293 (379)
Q Consensus       224 ~p~~~-~~~~~~~~l~~~-g~~~---~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~liG-Ah~~~~P~~GQG~n~gl~  293 (379)
                      ++.+. ...++.+.+... ....   .+........   . .....++.+|. ..|++++| |++.++|++|||+|+|++
T Consensus       228 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~rv~lvGDAAh~~~P~~GqG~~~ai~  306 (379)
T 3alj_A          228 APAADPRGSSVPIDLEVWVEMFPFLEPCLIEAAKLKTARYDKYETTKLDSWT-RGKVALVGDAAHAMCPALAQGAGCAMV  306 (379)
T ss_dssp             ECTTCTTTTCSSCCHHHHHHHCGGGHHHHHHHHTCTTCCEEEEEEEEESCSE-ETTEEECTHHHHCCCGGGSCHHHHHHH
T ss_pred             ecCCCCCHHHHHHHHhcCCchhccHHHHHhhCCccceEEecccccCCCCCcc-cCcEEEEEcccCCCCcchhhhHHHHHH
Confidence            22211 011222222110 0000   0000000000   0 00112244555 35899999 544556999999999999


Q ss_pred             HHHHHHHhhccc------cccccccchhhhhheeeeEEeeecccccchhhHHHHHHhhhhccCCCCh
Q psy9141         294 LCQEKIEKMFDN------TSTYKSRHINFIHRSYHLYTVDIGVHKVTESSILNLLLRGMKKNVPMPN  354 (379)
Q Consensus       294 Da~~L~~~l~~~------~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (379)
                      |+..|+++|.+.      +..|++++........             +.+..+..++.++..-...+
T Consensus       307 da~~La~~L~~~~~~~~~l~~Y~~~r~~~~~~~~-------------~~s~~~~~~~~~~~~~~~~~  360 (379)
T 3alj_A          307 NAFSLSQDLEEGSSVEDALVAWETRIRPITDRCQ-------------ALSGDYAANRSLSKGNMFTP  360 (379)
T ss_dssp             HHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHTGGGGSCCCCT
T ss_pred             HHHHHHHHhccccCHHHHHHHHHHHHHHHHHHHH-------------HHhhhhhHHhhccCCCccch
Confidence            999999999642      3456655544443222             22345556666655444433

>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A*

Probab=99.95  E-value=1.5e-27  Score=232.96  Aligned_cols=155  Identities=27%  Similarity=0.424  Sum_probs=115.6

Q ss_pred             CCCCCCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCH-HHHHHHHHCCChHHHHhCCCC
Q psy9141           1 MKCNSKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSV-RGREALRRIGLEDKLLAHGIP   79 (379)
Q Consensus         1 M~~m~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~-~~~~~l~~lGl~~~l~~~~~~   79 (379)
                      |++|+++||+||||||+|+++|+.|++.|++|+||||.+.+...  ..|..+  .+.+ .+.++|+++|+++.+...+.+
T Consensus        21 M~~~~~~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~--~~g~~~--~~~~~~~~~~l~~~gl~~~~~~~~~~   96 (398)
T 2xdo_A           21 MNLLSDKNVAIIGGGPVGLTMAKLLQQNGIDVSVYERDNDREAR--IFGGTL--DLHKGSGQEAMKKAGLLQTYYDLALP   96 (398)
T ss_dssp             --CCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEEECSSSTTCC--CCSCCE--ECCTTTHHHHHHHTTCHHHHHHHCBC
T ss_pred             ccccCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCcccc--ccCCee--eeCCccHHHHHHhcChHHHHHHhhcc
Confidence            55567799999999999999999999999999999998765421  235544  3443 678999999999998876666


Q ss_pred             ceeeEEEecCCcEEEe---e----CCCC-CcH-----HHHhcCCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEee
Q psy9141          80 MRARMIHGQNGKLREI---P----YDPV-HNQ-----VELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDN  146 (379)
Q Consensus        80 ~~~~~~~~~~g~~~~~---~----~~~~-~~~-----~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~a  146 (379)
                      ... .+++.+|.....   +    +... ..+     .......+++|+++++|++++.+++++++++. +|++   ++|
T Consensus        97 ~~~-~~~~~~g~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~-~g~~---~~a  171 (398)
T 2xdo_A           97 MGV-NIADEKGNILSTKNVKPENRFDNPEINRNDLRAILLNSLENDTVIWDRKLVMLEPGKKKWTLTFE-NKPS---ETA  171 (398)
T ss_dssp             CCE-EEECSSSEEEEECCCGGGTTSSCCEECHHHHHHHHHHTSCTTSEEESCCEEEEEECSSSEEEEET-TSCC---EEE
T ss_pred             cce-EEECCCCCchhhccccccCCCCCceECHHHHHHHHHhhcCCCEEEECCEEEEEEECCCEEEEEEC-CCcE---Eec
Confidence            555 666655543211   1    0001 111     12233345789999999999998888999998 8876   999


Q ss_pred             cEEEecCCCChHHHHHhh
Q psy9141         147 QLIIGADGAYSGVRKCLM  164 (379)
Q Consensus       147 dlVV~AdG~~S~vr~~l~  164 (379)
                      |+||+|||.+|.+|+++.
T Consensus       172 d~vV~AdG~~S~vR~~l~  189 (398)
T 2xdo_A          172 DLVILANGGMSKVRKFVT  189 (398)
T ss_dssp             SEEEECSCTTCSCCTTTC
T ss_pred             CEEEECCCcchhHHhhcc
Confidence            999999999999999873

>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A*

Probab=99.95  E-value=2.4e-27  Score=244.87  Aligned_cols=159  Identities=19%  Similarity=0.289  Sum_probs=117.6

Q ss_pred             CCcEEEECCChHHHHHHHHHHh-CCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeE
Q psy9141           6 KKSVVIVGGGLVGSLSACMFAK-NQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARM   84 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La~-~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~   84 (379)
                      ++||+||||||+||++|+.|++ .|++|+||||.+.+...    ++++  .++++++++|+++|+++++...+.+.....
T Consensus        32 ~~dVlIVGaGpaGL~~A~~La~~~G~~V~viEr~~~~~~~----g~a~--~l~~~t~e~l~~lGl~~~~~~~~~~~~~~~  105 (639)
T 2dkh_A           32 QVDVLIVGCGPAGLTLAAQLAAFPDIRTCIVEQKEGPMEL----GQAD--GIACRTMEMFEAFEFADSILKEACWINDVT  105 (639)
T ss_dssp             EEEEEEECCSHHHHHHHHHHTTCTTSCEEEECSSSSCCSS----CSCC--EECHHHHHHHHHTTCHHHHHHHSEEECEEE
T ss_pred             CCcEEEECcCHHHHHHHHHHHHhCCCCEEEEeCCCCCCCC----Ccee--eeCHHHHHHHHHcCcHHHHHHhcccccceE
Confidence            5799999999999999999999 99999999999866543    5554  689999999999999999887777777677


Q ss_pred             EEecC----CcEE---EeeC---C--CC----CcH--------HHHhcCC-CCeEEeCceEEEEEecCC----eEEEEEc
Q psy9141          85 IHGQN----GKLR---EIPY---D--PV----HNQ--------VELEQYP-DCNIYFQHKLINLDVNSG----NVTFYRT  135 (379)
Q Consensus        85 ~~~~~----g~~~---~~~~---~--~~----~~~--------~~~~~~~-gv~i~~~~~v~~i~~~~~----~v~v~~~  135 (379)
                      ++..+    +...   ..+.   .  ..    ..+        +.+.+.. +++|+++++|++++.+++    ++++++.
T Consensus       106 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~q~~l~~~L~~~a~~~g~~v~v~~~~~v~~l~~~~~~~~~~v~v~~~  185 (639)
T 2dkh_A          106 FWKPDPGQPGRIARHGRVQDTEDGLSEFPHVILNQARVHDHYLERMRNSPSRLEPHYARRVLDVKVDHGAADYPVTVTLE  185 (639)
T ss_dssp             EEEECTTSTTCEEEEEEEESSCTTSCSSCEEECCHHHHHHHHHHHHHHSTTCCCCBCSEEEEEEEECTTCSSCCEEEEEE
T ss_pred             EECCCCCCCcceEeecccCcccCCCCCCceEeeCHHHHHHHHHHHHHhCCCCcEEecCCEEEEEEECCCCCcCCEEEEEE
Confidence            76642    3321   1111   1  00    122        2333333 459999999999998763    5777765


Q ss_pred             c-----CCceeEEEeecEEEecCCCChHHHHHh-hhcCCCCc
Q psy9141         136 E-----DNSETKITDNQLIIGADGAYSGVRKCL-MKQSMFNY  171 (379)
Q Consensus       136 ~-----~G~~~~~i~adlVV~AdG~~S~vr~~l-~~~~~~~~  171 (379)
                      +     +|+..+ ++||+||+|||.+|.+|+++ +...+..+
T Consensus       186 ~~~~~~~G~~~~-i~a~~vVgADG~~S~vR~~lg~~~~g~~~  226 (639)
T 2dkh_A          186 RCDAAHAGQIET-VQARYVVGCDGARSNVRRAIGRQLVGDSA  226 (639)
T ss_dssp             ECSGGGTTCEEE-EEEEEEEECCCTTCHHHHHTTCCCEECSC
T ss_pred             eccccCCCCeEE-EEeCEEEECCCcchHHHHHhCCCCCCCCc
Confidence            2     465445 99999999999999999998 44443333

>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ...

Probab=99.95  E-value=3e-28  Score=237.10  Aligned_cols=150  Identities=19%  Similarity=0.189  Sum_probs=111.0

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeEE
Q psy9141           6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARMI   85 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~~   85 (379)
                      ++||+||||||+|+++|+.|++.|++|+|+|+.+.+...... +.+   .+++++.++|+++|+++.+...+.+.....+
T Consensus         2 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~-~~g---~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~   77 (394)
T 1k0i_A            2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQTPDYVLGRI-RAG---VLEQGMVDLLREAGVDRRMARDGLVHEGVEI   77 (394)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHHTCCEEEECSSCHHHHHTCC-CCC---EECHHHHHHHHHTTCCHHHHHHCEEESCEEE
T ss_pred             CccEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCcccCCC-ceE---eECHHHHHHHHHcCCcHHHHhcCCccceEEE
Confidence            379999999999999999999999999999998742100000 222   4789999999999999998877767666666


Q ss_pred             EecCCcEEEeeC-----CCC---CcH--------HHHhcCCCCeEEeCceEEEEEecC-CeEEEEE-ccCCceeEEEeec
Q psy9141          86 HGQNGKLREIPY-----DPV---HNQ--------VELEQYPDCNIYFQHKLINLDVNS-GNVTFYR-TEDNSETKITDNQ  147 (379)
Q Consensus        86 ~~~~g~~~~~~~-----~~~---~~~--------~~~~~~~gv~i~~~~~v~~i~~~~-~~v~v~~-~~~G~~~~~i~ad  147 (379)
                      +... ....+++     ...   ..+        ..+.+ .+++++++++|++++.++ +++.+++ . +|++.+ ++||
T Consensus        78 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~-~g~~i~~~~~v~~i~~~~~~~~~v~~~~-~g~~~~-~~a~  153 (394)
T 1k0i_A           78 AFAG-QRRRIDLKRLSGGKTVTVYGQTEVTRDLMEAREA-CGATTVYQAAEVRLHDLQGERPYVTFER-DGERLR-LDCD  153 (394)
T ss_dssp             EETT-EEEEECHHHHHTSCCEEECCHHHHHHHHHHHHHH-TTCEEESSCEEEEEECTTSSSCEEEEEE-TTEEEE-EECS
T ss_pred             EECC-ceEEeccccccCCCceEEechHHHHHHHHHHHHh-cCCeEEeceeEEEEEEecCCceEEEEec-CCcEEE-EEeC
Confidence            6543 2222222     100   011        22223 489999999999998864 5677777 6 887444 9999


Q ss_pred             EEEecCCCChHHHHHh
Q psy9141         148 LIIGADGAYSGVRKCL  163 (379)
Q Consensus       148 lVV~AdG~~S~vr~~l  163 (379)
                      +||+|||.+|.+|+++
T Consensus       154 ~vV~AdG~~S~vr~~l  169 (394)
T 1k0i_A          154 YIAGCDGFHGISRQSI  169 (394)
T ss_dssp             EEEECCCTTCSTGGGS
T ss_pred             EEEECCCCCcHHHHhc
Confidence            9999999999999987

>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}

Probab=99.94  E-value=2.9e-26  Score=221.82  Aligned_cols=162  Identities=19%  Similarity=0.232  Sum_probs=107.5

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceee
Q psy9141           4 NSKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRAR   83 (379)
Q Consensus         4 m~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~   83 (379)
                      |++|||+||||||+||++|+.|+++|++|+||||.+.+... ..+|.+    +++   .+++.+|+..........+.+.
T Consensus         2 Me~yDViIVGaGpaGl~~A~~La~~G~~V~v~Er~~~~~~~-~~~g~~----l~~---~~l~~l~~~~~~~~~~~~~~~~   73 (397)
T 3oz2_A            2 METYDVLVVGGGPGGSTAARYAAKYGLKTLMIEKRPEIGSP-VRCGEG----LSK---GILNEADIKADRSFIANEVKGA   73 (397)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSTTCS-CCSCCE----EET---HHHHHTTCCCCTTTEEEEESEE
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCCC-Cceecc----cCH---HHHHHcCCCchhhhhhcccceE
Confidence            56799999999999999999999999999999998766432 223433    344   4577777654322223344556


Q ss_pred             EEEecCCcE-EEeeCCCC-------CcH-------HHHhcCCCCeEEeCceEEEEEecCCeEEE-EEccCCceeEEEeec
Q psy9141          84 MIHGQNGKL-REIPYDPV-------HNQ-------VELEQYPDCNIYFQHKLINLDVNSGNVTF-YRTEDNSETKITDNQ  147 (379)
Q Consensus        84 ~~~~~~g~~-~~~~~~~~-------~~~-------~~~~~~~gv~i~~~~~v~~i~~~~~~v~v-~~~~~G~~~~~i~ad  147 (379)
                      .++..++.. ........       ..+       ...+...|++++++++|+++..+++.+.. ....+|+..+ ++||
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~i~R~~~~~~L~~~a~~~G~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~-~~a~  152 (397)
T 3oz2_A           74 RIYGPSEKRPIILQSEKAGNEVGYVLERDKFDKHLAALAAKAGADVWVKSPALGVIKENGKVAGAKIRHNNEIVD-VRAK  152 (397)
T ss_dssp             EEECTTCSSCEEEECSSSSCCCEEEECHHHHHHHHHHHHHHHTCEEESSCCEEEEEEETTEEEEEEEEETTEEEE-EEEE
T ss_pred             EEEeCCCceEeeccccccCCceeEEEEHHHHHHHHHHHHHhcCcEEeeeeeeeeeeeccceeeeeeecccccceE-EEEe
Confidence            666554432 11111110       111       22233469999999999999988887653 2222566556 9999


Q ss_pred             EEEecCCCChHHHHHh-hhcCCCCccce
Q psy9141         148 LIIGADGAYSGVRKCL-MKQSMFNYSQT  174 (379)
Q Consensus       148 lVV~AdG~~S~vr~~l-~~~~~~~~~~~  174 (379)
                      +||+|||.+|.+|+++ .......+...
T Consensus       153 ~vIgAdG~~S~vr~~~g~~~~~~~~~~~  180 (397)
T 3oz2_A          153 MVIAADGFESEFGRWAGLKSVILARNDI  180 (397)
T ss_dssp             EEEECCCTTCHHHHHHTCGGGCCCGGGE
T ss_pred             EEEeCCccccHHHHHcCCCcccccceee
Confidence            9999999999999998 44443444433

>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}

Probab=99.93  E-value=6.2e-25  Score=215.31  Aligned_cols=163  Identities=16%  Similarity=0.274  Sum_probs=114.7

Q ss_pred             CCCCCCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCc
Q psy9141           1 MKCNSKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPM   80 (379)
Q Consensus         1 M~~m~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~   80 (379)
                      |+ +.++||+||||||+|+++|+.|++.|++|+|+|+.+.+...   .|.    .+.+.+.+.++.+|+++.+...+.+.
T Consensus         1 M~-~~~~dVvIIGgG~aGl~~A~~La~~G~~V~v~E~~~~~~~~---~g~----~~~~~~~~~l~~~g~~~~~~~~~~~~   72 (421)
T 3nix_A            1 MQ-REKVDVLVIGAGPAGTVAASLVNKSGFKVKIVEKQKFPRFV---IGE----SLLPRCMEHLDEAGFLDAVKAQGFQQ   72 (421)
T ss_dssp             ----CEEEEEEECCSHHHHHHHHHHHTTTCCEEEECSSCSSCCC---SCC----BCCGGGHHHHHHTTCHHHHHHTTCEE
T ss_pred             CC-CccCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCCCc---ccC----cccHhHHHHHHHcCChHHHHHcCCcc
Confidence            54 34589999999999999999999999999999999755421   132    57899999999999999988776544


Q ss_pred             e-eeEEEecCCcEEEeeCCCCC----------cH-------HHHhcCCCCeEEeCceEEEEEecCCeE--EEEEccCCce
Q psy9141          81 R-ARMIHGQNGKLREIPYDPVH----------NQ-------VELEQYPDCNIYFQHKLINLDVNSGNV--TFYRTEDNSE  140 (379)
Q Consensus        81 ~-~~~~~~~~g~~~~~~~~~~~----------~~-------~~~~~~~gv~i~~~~~v~~i~~~~~~v--~v~~~~~G~~  140 (379)
                      . +..+.. .+....+++....          .+       ....+..|++++++++|++++.+++++  .+.+. +|+.
T Consensus        73 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~L~~~a~~~gv~i~~~~~v~~i~~~~~~~~v~v~~~-~g~~  150 (421)
T 3nix_A           73 KFGAKFVR-GKEIADFNFSDQFSNGWNWTWQVPRGNFDKTLADEAARQGVDVEYEVGVTDIKFFGTDSVTTIEDI-NGNK  150 (421)
T ss_dssp             ECEEEEEE-TTEEEEEETTSCSSCSCCCEEECCHHHHHHHHHHHHHHHTCEEECSEEEEEEEEETTEEEEEEEET-TSCE
T ss_pred             cCCcEEEe-CCeeEEEeehhhcCCCCCceeEECHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEcC-CCCE
Confidence            3 333332 2333333332110          11       122223489999999999999887765  45556 8885


Q ss_pred             eEEEeecEEEecCCCChHHHHHh-hhcCCCCccce
Q psy9141         141 TKITDNQLIIGADGAYSGVRKCL-MKQSMFNYSQT  174 (379)
Q Consensus       141 ~~~i~adlVV~AdG~~S~vr~~l-~~~~~~~~~~~  174 (379)
                      .+ ++||+||+|||.+|.+|+.+ ...+...+...
T Consensus       151 ~~-~~a~~vV~A~G~~s~l~~~~g~~~~~~~~~~~  184 (421)
T 3nix_A          151 RE-IEARFIIDASGYGRVIPRMFGLDKPSGFESRR  184 (421)
T ss_dssp             EE-EEEEEEEECCGGGCHHHHHTTCEECCSSCCCE
T ss_pred             EE-EEcCEEEECCCCchhhHHhcCCCCCCcCCCcE
Confidence            55 99999999999999999887 44443333333

>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}

Probab=99.91  E-value=1.4e-23  Score=211.48  Aligned_cols=151  Identities=17%  Similarity=0.245  Sum_probs=106.9

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHH-HHHHCCChHHHHhCCCCcee
Q psy9141           4 NSKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGRE-ALRRIGLEDKLLAHGIPMRA   82 (379)
Q Consensus         4 m~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~-~l~~lGl~~~l~~~~~~~~~   82 (379)
                      +.++||+||||||+|+++|+.|++.|++|+|||+.+.+...   .|.    .+.+.... +++.+|+++.+...+.+...
T Consensus         5 ~~~~dVvIVGgG~aGl~aA~~La~~G~~V~liE~~~~~~~~---~g~----~~~~~~~~~~l~~lgl~~~~~~~~~~~~~   77 (512)
T 3e1t_A            5 PEVFDLIVIGGGPGGSTLASFVAMRGHRVLLLEREAFPRHQ---IGE----SLLPATVHGICAMLGLTDEMKRAGFPIKR   77 (512)
T ss_dssp             CEEEEEEEECCSHHHHHHHHHHHTTTCCEEEECSSCSSCCC---SCC----BCCHHHHTTHHHHTTCHHHHHTTTCCEEC
T ss_pred             CccCCEEEECcCHHHHHHHHHHHhCCCCEEEEccCCCCCCC---CCc----ccCcchHHHHHHHhCcHHHHHHcCCcccc
Confidence            44689999999999999999999999999999999754321   122    35676554 89999999998877655544


Q ss_pred             eEEEecCCc--EEEeeCCCC----------CcH-------HHHhcCCCCeEEeCceEEEEEecCCeE---EEEEccCCce
Q psy9141          83 RMIHGQNGK--LREIPYDPV----------HNQ-------VELEQYPDCNIYFQHKLINLDVNSGNV---TFYRTEDNSE  140 (379)
Q Consensus        83 ~~~~~~~g~--~~~~~~~~~----------~~~-------~~~~~~~gv~i~~~~~v~~i~~~~~~v---~v~~~~~G~~  140 (379)
                      ...+.....  .....+...          ..+       .......|++++++++|++++.+++.+   ++... +|+.
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~~~~V~~v~~~~~~v~gv~~~~~-dG~~  156 (512)
T 3e1t_A           78 GGTFRWGKEPEPWTFGFTRHPDDPYGFAYQVERARFDDMLLRNSERKGVDVRERHEVIDVLFEGERAVGVRYRNT-EGVE  156 (512)
T ss_dssp             EEEEECSSCSSCEEEESSSSSSSTTCCEEBCCHHHHHHHHHHHHHHTTCEEESSCEEEEEEEETTEEEEEEEECS-SSCE
T ss_pred             CceEEecCCccccccccccCCCCCcceeeEecHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEECCEEEEEEEEeC-CCCE
Confidence            333222211  111111110          111       122233799999999999999988854   44455 6864


Q ss_pred             eEEEeecEEEecCCCChHHHHHh
Q psy9141         141 TKITDNQLIIGADGAYSGVRKCL  163 (379)
Q Consensus       141 ~~~i~adlVV~AdG~~S~vr~~l  163 (379)
                      .+ ++||+||+|||.+|.+|+++
T Consensus       157 ~~-i~ad~VI~AdG~~S~vr~~l  178 (512)
T 3e1t_A          157 LM-AHARFIVDASGNRTRVSQAV  178 (512)
T ss_dssp             EE-EEEEEEEECCCTTCSSGGGT
T ss_pred             EE-EEcCEEEECCCcchHHHHHc
Confidence            45 99999999999999999998

>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae}

Probab=99.91  E-value=1e-24  Score=222.75  Aligned_cols=152  Identities=17%  Similarity=0.256  Sum_probs=108.3

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCce-e
Q psy9141           4 NSKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMR-A   82 (379)
Q Consensus         4 m~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~-~   82 (379)
                      |+++||+||||||+|+++|+.|++.|++|+|||+.+.+..     +.+.  ++.+.+.++++.+|+++.+...+.... .
T Consensus        21 M~~~DVvIVGgG~AGl~aA~~Lar~G~~V~LiEr~~~~~~-----~~G~--~l~p~~~~~l~~lGl~~~l~~~~~~~~~~   93 (591)
T 3i3l_A           21 MTRSKVAIIGGGPAGSVAGLTLHKLGHDVTIYERSAFPRY-----RVGE--SLLPGTMSILNRLGLQEKIDAQNYVKKPS   93 (591)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCSSCC-----CCCC--BCCHHHHHHHHHTTCHHHHHHHCCEEECE
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHcCCCCEEEEcCCCCCCC-----ceee--eECHHHHHHHHHcCCcHHHHhcCCcccCC
Confidence            6789999999999999999999999999999999975542     2222  578999999999999998876644332 2


Q ss_pred             eEEEe-cCCcEEEeeCCC--------C----CcH-------HHHhcCCCCeEEeCceEEEEEec-CCeEEEEEccCCcee
Q psy9141          83 RMIHG-QNGKLREIPYDP--------V----HNQ-------VELEQYPDCNIYFQHKLINLDVN-SGNVTFYRTEDNSET  141 (379)
Q Consensus        83 ~~~~~-~~g~~~~~~~~~--------~----~~~-------~~~~~~~gv~i~~~~~v~~i~~~-~~~v~v~~~~~G~~~  141 (379)
                      ..+.. .........+..        .    ..+       ....+..|++++++++|++++.+ ++.+.+++..+|+..
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~g~~V~~v~~~~g~~~~V~~~~~G~~~  173 (591)
T 3i3l_A           94 ATFLWGQDQAPWTFSFAAPKVAPWVFDHAVQVKREEFDKLLLDEARSRGITVHEETPVTDVDLSDPDRVVLTVRRGGESV  173 (591)
T ss_dssp             EEEECSSSCCCEEEECCCC--CTTCCSCEEECCHHHHHHHHHHHHHHTTCEEETTCCEEEEECCSTTCEEEEEEETTEEE
T ss_pred             cEEEecCCCccceeecccccccccccCeeEEEcHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCEEEEEEecCCceE
Confidence            22221 111111111111        0    011       12233379999999999999876 556777765356434


Q ss_pred             EEEeecEEEecCCCChHHHHHh
Q psy9141         142 KITDNQLIIGADGAYSGVRKCL  163 (379)
Q Consensus       142 ~~i~adlVV~AdG~~S~vr~~l  163 (379)
                      + ++||+||+|||.+|.+|+.+
T Consensus       174 ~-i~AdlVV~AdG~~S~lr~~l  194 (591)
T 3i3l_A          174 T-VESDFVIDAGGSGGPISRKL  194 (591)
T ss_dssp             E-EEESEEEECCGGGCHHHHHH
T ss_pred             E-EEcCEEEECCCCcchhHHHc
Confidence            4 99999999999999999987

>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A*

Probab=99.90  E-value=2.3e-23  Score=206.73  Aligned_cols=150  Identities=16%  Similarity=0.181  Sum_probs=100.1

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHh-CCCCceeeE
Q psy9141           6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLA-HGIPMRARM   84 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~-~~~~~~~~~   84 (379)
                      ++||+||||||+|+++|+.|+++|++|+|+|+.+.+.......|..    +   +.+.++.+|++..... ......+..
T Consensus         6 ~~dVvIVGaG~aGl~aA~~La~~G~~V~vlE~~~~~~~g~~~~g~~----l---~~~~l~~lg~~~~~~~~~~~~~~~~~   78 (453)
T 3atr_A            6 KYDVLIIGGGFAGSSAAYQLSRRGLKILLVDSKPWNRIGDKPCGDA----V---SKAHFDKLGMPYPKGEELENKINGIK   78 (453)
T ss_dssp             ECSEEEECCSHHHHHHHHHHSSSSCCEEEECSSCGGGTTCSCCCCE----E---EHHHHHHTTCCCCCGGGEEEEEEEEE
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCCccccccc----c---cHHHHHHhcCCCCchHHHHhhhcceE
Confidence            5899999999999999999999999999999987643211222332    2   4678888887653221 122333444


Q ss_pred             EEecCCcE-EEee-CCCCCcH-------HHHhcCCCCeEEeCceEEEEEecCCeEE-EEEcc--CCceeEEEeecEEEec
Q psy9141          85 IHGQNGKL-REIP-YDPVHNQ-------VELEQYPDCNIYFQHKLINLDVNSGNVT-FYRTE--DNSETKITDNQLIIGA  152 (379)
Q Consensus        85 ~~~~~g~~-~~~~-~~~~~~~-------~~~~~~~gv~i~~~~~v~~i~~~~~~v~-v~~~~--~G~~~~~i~adlVV~A  152 (379)
                      ++..++.. ...+ ......+       .......|++++++++|++++.++++++ +++..  +|+..+ ++||+||+|
T Consensus        79 ~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~a~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~G~~~~-~~ad~VV~A  157 (453)
T 3atr_A           79 LYSPDMQTVWTVNGEGFELNAPLYNQRVLKEAQDRGVEIWDLTTAMKPIFEDGYVKGAVLFNRRTNEELT-VYSKVVVEA  157 (453)
T ss_dssp             EECTTSSCEEEEEEEEEEECHHHHHHHHHHHHHHTTCEEESSEEEEEEEEETTEEEEEEEEETTTTEEEE-EECSEEEEC
T ss_pred             EECCCCceEEeECCCcEEEcHHHHHHHHHHHHHHcCCEEEeCcEEEEEEEECCEEEEEEEEEcCCCceEE-EEcCEEEEC
Confidence            55444321 1111 0111111       1222236899999999999998888765 55432  465445 999999999


Q ss_pred             CCCChHHHHHh
Q psy9141         153 DGAYSGVRKCL  163 (379)
Q Consensus       153 dG~~S~vr~~l  163 (379)
                      ||.+|.+|+.+
T Consensus       158 dG~~s~vr~~l  168 (453)
T 3atr_A          158 TGYSRSFRSKL  168 (453)
T ss_dssp             CGGGCTTGGGS
T ss_pred             cCCchhhHHhc
Confidence            99999999987

>2pyx_A Tryptophan halogenase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative biosynthetic protein; HET: MSE TLA PG4; 1.50A {Shewanella frigidimarina}

Probab=99.87  E-value=5.5e-22  Score=200.47  Aligned_cols=151  Identities=19%  Similarity=0.210  Sum_probs=101.4

Q ss_pred             CCCCCCCcEEEECCChHHHHHHHHHHh------------CCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCC
Q psy9141           1 MKCNSKKSVVIVGGGLVGSLSACMFAK------------NQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIG   68 (379)
Q Consensus         1 M~~m~~~dVvIVGaGpaGl~~A~~La~------------~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lG   68 (379)
                      |+++..+||+||||||+|+++|+.|++            .|++|+|||+.+.+..     +.+.  ++.+++.++|+.+|
T Consensus         2 mm~~~~~dVvIVGgG~aGl~aA~~La~~~~~~~~~~~~~~G~~V~liE~~~~~~~-----g~g~--~~~p~~~~~l~~lG   74 (526)
T 2pyx_A            2 MMQKPITEIIIVGGGTAGWITAGLLAAEHNVDKGVLAHSPKLNITLIESPDVATI-----GVGE--GTWPSMRSTLSKIG   74 (526)
T ss_dssp             GGGSCCCEEEEECCHHHHHHHHHHHHHHHHEETTEECSSCSCEEEEEECSSCCCC-----CSCE--ECCTHHHHHHHHHT
T ss_pred             CCCCCCCeEEEECCCHHHHHHHHHHHhhhccccccccCCCCCeEEEEeCCCCCCc-----ceee--echHhHHHHHHHcC
Confidence            443457899999999999999999999            9999999998764432     2222  57899999999999


Q ss_pred             ChHH--HHhCCCC-ceeeEEEecC-------CcEEEeeC-----------------------------------------
Q psy9141          69 LEDK--LLAHGIP-MRARMIHGQN-------GKLREIPY-----------------------------------------   97 (379)
Q Consensus        69 l~~~--l~~~~~~-~~~~~~~~~~-------g~~~~~~~-----------------------------------------   97 (379)
                      +++.  +...+.. ..++.+.+..       +.....++                                         
T Consensus        75 i~e~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~v~~q~~~~~~~~~~  154 (526)
T 2pyx_A           75 IDENDFIRQCDASFKQGSRFINWCKDPQSNVADSYLHPFSLPHGHQELDLCPYWLPHAEQVSFAEAVCSQQVLTQLGLAP  154 (526)
T ss_dssp             CCHHHHHHHTTCEEECEEEEESCSSCCBTTBCCEEEEESSCCTTTTTCCCHHHHGGGTTTSCHHHHHCSHHHHHHTTBCS
T ss_pred             CCHHHHHHHcCCEEECCCcccCCCccccCCCCCceecCCCCCCCCCCCChhHHHHhhhhccCchhhcccccchhhhccch
Confidence            9986  5554322 2222222110       00000000                                         


Q ss_pred             --------CCC------CcH--------HHHhcCCCCeEEeCceEEEEEecCCe--EEEEEccCCceeEEEeecEEEecC
Q psy9141          98 --------DPV------HNQ--------VELEQYPDCNIYFQHKLINLDVNSGN--VTFYRTEDNSETKITDNQLIIGAD  153 (379)
Q Consensus        98 --------~~~------~~~--------~~~~~~~gv~i~~~~~v~~i~~~~~~--v~v~~~~~G~~~~~i~adlVV~Ad  153 (379)
                              ...      ..+        ..+.+..|++++++ +|++++.++++  +.+++. +|++   ++||+||+||
T Consensus       155 ~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~a~~~~Gv~i~~~-~v~~i~~~~~g~~~~v~~~-~g~~---i~ad~vV~Ad  229 (526)
T 2pyx_A          155 KSIVTAQYHFQNNYGYHLNAAKFSQLLTEHCTQKLGVTHIRD-HVSQIINNQHGDIEKLITK-QNGE---ISGQLFIDCT  229 (526)
T ss_dssp             SCTTSCTTCCSSCCEEEECHHHHHHHHHHHHHHTSCCEEEEC-CEEEEEECTTSCEEEEEES-SSCE---EECSEEEECS
T ss_pred             hhhhccccCCCCCeeEEEcHHHHHHHHHHHHHhcCCCEEEEe-EEEEEEecCCCcEEEEEEC-CCCE---EEcCEEEECC
Confidence                    000      011        12222269999999 69999887554  457777 7776   9999999999


Q ss_pred             CCChHHH-HHh
Q psy9141         154 GAYSGVR-KCL  163 (379)
Q Consensus       154 G~~S~vr-~~l  163 (379)
                      |.+|.++ +.+
T Consensus       230 G~~S~~~~~~l  240 (526)
T 2pyx_A          230 GAKSLLLGEHL  240 (526)
T ss_dssp             GGGCCCCCCCT
T ss_pred             CcchHHHHHHh
Confidence            9999994 444

>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472}

Probab=99.86  E-value=1.7e-23  Score=203.00  Aligned_cols=273  Identities=9%  Similarity=0.015  Sum_probs=142.4

Q ss_pred             cEEEECCChHHHHHHHHHHhC--CCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCCh-HH-HHhCCCCceee
Q psy9141           8 SVVIVGGGLVGSLSACMFAKN--QYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLE-DK-LLAHGIPMRAR   83 (379)
Q Consensus         8 dVvIVGaGpaGl~~A~~La~~--G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~-~~-l~~~~~~~~~~   83 (379)
                      ||+||||||+|+++|+.|++.  |++|+|+||.+.+...    |+++  .+++++.+.+...+++ +. +.....+....
T Consensus         2 dV~IVGaG~aGl~~A~~L~~~~~G~~V~v~E~~~~~~~~----g~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   75 (381)
T 3c4a_A            2 KILVIGAGPAGLVFASQLKQARPLWAIDIVEKNDEQEVL----GWGV--VLPGRPGQHPANPLSYLDAPERLNPQFLEDF   75 (381)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSCTTCCC----CSEE--EEESCTTTCTTCGGGGSSCGGGGCCEEECCE
T ss_pred             eEEEECCCHHHHHHHHHHHhcCCCCCEEEEECCCCCCcc----eeEE--EeCcHHHHhhcCcchhhhhhHHHhhccccce
Confidence            899999999999999999999  9999999999866432    5555  3555555422222344 33 44344444455


Q ss_pred             EEEecCCcEEEeeCCCC---CcH--------HHHhcCCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEEEec
Q psy9141          84 MIHGQNGKLREIPYDPV---HNQ--------VELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGA  152 (379)
Q Consensus        84 ~~~~~~g~~~~~~~~~~---~~~--------~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlVV~A  152 (379)
                      .++. .|......++..   ..+        +.+.+ .|++++++++|++++..            ++   ++||+||+|
T Consensus        76 ~~~~-~g~~~~~~~~~~~~~~~r~~l~~~L~~~~~~-~gv~i~~~~~v~~i~~~------------~~---~~ad~vV~A  138 (381)
T 3c4a_A           76 KLVH-HNEPSLMSTGVLLCGVERRGLVHALRDKCRS-QGIAIRFESPLLEHGEL------------PL---ADYDLVVLA  138 (381)
T ss_dssp             EEEE-SSSEEECCCCSCEEEEEHHHHHHHHHHHHHH-TTCEEETTCCCCSGGGC------------CG---GGCSEEEEC
T ss_pred             EEEe-CCeeEEecCCCceeeecHHHHHHHHHHHHHH-CCCEEEeCCEeccchhc------------cc---ccCCEEEEC
Confidence            5555 343222111111   111        22233 48999999999887531            12   789999999


Q ss_pred             CCCChHHHHHhhhcCCCCccceeeeeeeEEEeeCCCCCccccccccceeeecCCCCeEEEEEecCCCcee-eec--C---
Q psy9141         153 DGAYSGVRKCLMKQSMFNYSQTYIEHGYMELCIPPSEDNEVWLYKNRLLSSVPEVRKRISLRAQSLKSLM-NFP--R---  226 (379)
Q Consensus       153 dG~~S~vr~~l~~~~~~~~~~~~i~~~~~~~~~p~~~~~~~~~~p~~~~~~~p~~~~~~~~~~~~~~~~~-~~p--~---  226 (379)
                      ||.+|. |+.+....+..+........+... .+..+..+..+     . ..+..+..+.++|...+... .+.  .   
T Consensus       139 dG~~S~-R~~l~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~-----~-~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~  210 (381)
T 3c4a_A          139 NGVNHK-TAHFTEALVPQVDYGRNKYIWYGT-SQLFDQMNLVF-----R-THGKDIFIAHAYKYSDTMSTFIVECSEETY  210 (381)
T ss_dssp             CGGGGG-TCCSSGGGCCCCEEEEEEEEEEEE-SSCCSSEEEEE-----E-EETTEEEEEEEEECSSSCEEEEEEECHHHH
T ss_pred             CCCCch-HHhhhhhcCCCcccCCccEEEEec-CCCCCcceeeE-----e-eCCCcEEEEEEEEecCCeEEEEEECCcccc
Confidence            999999 988733222222211111111111 11100001100     0 01111111123443323221 111  0   


Q ss_pred             --CCCCC----Chhhh----cccc-cccccccCCcccCCCccccCCCCCccccCCcEEEe-eecccCCCcchhhhhHHHH
Q psy9141         227 --ADQGG----DKRDC----LLHE-GTSRILVPNMRLSNHLDRDQPCKPLLDFKNPIKIQ-SHAVVNEFYKQESLIVASL  294 (379)
Q Consensus       227 --~~~~~----~~~~~----l~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liG-Ah~~~~P~~GQG~n~gl~D  294 (379)
                        ..+..    +..+.    +... +...+ ..............++..|. ..|++++| |++.+||+.|||+|+||+|
T Consensus       211 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~-~grv~LvGDAAh~~~P~~GqG~~~al~D  288 (381)
T 3c4a_A          211 ARARLGEMSEEASAEYVAKVFQAELGGHGL-VSQPGLGWRNFMTLSHDRCH-DGKLVLLGDALQSGHFSIGHGTTMAVVV  288 (381)
T ss_dssp             HHTTSSSSCHHHHHHHHHHHTHHHHTTCCC-BCCTTTCSEEEEECCCSCSE-ETTEEECGGGTCCCCGGGCCHHHHHHHH
T ss_pred             ccCCcccCChHHHHHHHHHHhcccCCCchh-hcCCCcceeeeccccCCCcc-cCCEEEEEccccccCCCccccHHHHHHH
Confidence              11100    11111    1111 01111 11100000011123455666 35899999 4444569999999999999


Q ss_pred             HHHHHHhhcc------ccccccccc
Q psy9141         295 CQEKIEKMFD------NTSTYKSRH  313 (379)
Q Consensus       295 a~~L~~~l~~------~~~~~~~~~  313 (379)
                      |..|+++|.+      .+.+|++++
T Consensus       289 a~~La~~L~~~~~~~~aL~~Y~~~r  313 (381)
T 3c4a_A          289 AQLLVKALCTEDGVPAALKRFEERA  313 (381)
T ss_dssp             HHHHHHHHHHSSSHHHHHHHHHHHH
T ss_pred             HHHHHHHHhccccHHHHHHHHHHHH
Confidence            9999999864      345677665

>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A

Probab=99.86  E-value=2.7e-21  Score=196.40  Aligned_cols=147  Identities=12%  Similarity=0.095  Sum_probs=99.3

Q ss_pred             CCCcEEEECCChHHHHHHHHHHh---CCCcEEEEccCCCCCCCCCCCCcccccccCHHHHH-HHHHCCChHH--HHhCCC
Q psy9141           5 SKKSVVIVGGGLVGSLSACMFAK---NQYEVNLYEAREDIRNSGLSEGKSINLALSVRGRE-ALRRIGLEDK--LLAHGI   78 (379)
Q Consensus         5 ~~~dVvIVGaGpaGl~~A~~La~---~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~-~l~~lGl~~~--l~~~~~   78 (379)
                      +.+||+|||||++|+++|+.|++   .|++|+|||+.+.+..     +.+.  ++.+.+.+ +++.+|+++.  +.....
T Consensus        24 ~~~dVvIVGgG~aGl~aA~~La~~~~~G~~V~liE~~~~~~~-----~~g~--~~~p~~~~~~l~~lGi~~~~~~~~~~~   96 (550)
T 2e4g_A           24 KIDKILIVGGGTAGWMAASYLGKALQGTADITLLQAPDIPTL-----GVGE--ATIPNLQTAFFDFLGIPEDEWMRECNA   96 (550)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHTTTSSEEEEEECCCCCCC-----CCCE--ECCTHHHHHTHHHHTCCHHHHHHHTTC
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhhcCCCCcEEEEeCCCCCcc-----ceee--eechhHHHHHHHHhCCChHHHHHhcCC
Confidence            46899999999999999999999   9999999999764432     2222  56788899 9999999876  554332


Q ss_pred             Cc-eeeEEEecCC---------------cEEEeeCC--------------------------------------------
Q psy9141          79 PM-RARMIHGQNG---------------KLREIPYD--------------------------------------------   98 (379)
Q Consensus        79 ~~-~~~~~~~~~g---------------~~~~~~~~--------------------------------------------   98 (379)
                      .. .+..+.....               .....+++                                            
T Consensus        97 ~~~~g~~~~~w~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  176 (550)
T 2e4g_A           97 SYKVAIKFINWRTAGEGTSEARELDGGPDHFYHSFGLLKYHEQIPLSHYWFDRSYRGKTVEPFDYACYKEPVILDANRSP  176 (550)
T ss_dssp             EEECEEEEESSSSCCCCCSSCCEETTEESEEEEESSCCCEETTEEHHHHHHHHHHTTSCCCCHHHHHCSHHHHHHTTBCS
T ss_pred             eEEEeeeEeecccccccccccccccCCCCeeEecCCccCCCCcccHHHHHHhhcccccccccccccccchhhHHHhhhhh
Confidence            22 1222211110               00000110                                            


Q ss_pred             --------CC----CcH--------HHHhcCCCCeEEeCceEEEEEecCCe--EEEEEccCCceeEEEeecEEEecCCCC
Q psy9141          99 --------PV----HNQ--------VELEQYPDCNIYFQHKLINLDVNSGN--VTFYRTEDNSETKITDNQLIIGADGAY  156 (379)
Q Consensus        99 --------~~----~~~--------~~~~~~~gv~i~~~~~v~~i~~~~~~--v~v~~~~~G~~~~~i~adlVV~AdG~~  156 (379)
                              ..    ..+        ..+.+.+|++++++ +|++++.++++  +.+++. +|++   ++||+||+|||.+
T Consensus       177 ~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~Gv~i~~~-~V~~i~~~~~g~~~~v~~~-~G~~---i~ad~vI~A~G~~  251 (550)
T 2e4g_A          177 RRLDGSKVTNYAWHFDAHLVADFLRRFATEKLGVRHVED-RVEHVQRDANGNIESVRTA-TGRV---FDADLFVDCSGFR  251 (550)
T ss_dssp             BCTTSCBCSCCEEEECHHHHHHHHHHHHHHHSCCEEEEC-CEEEEEECTTSCEEEEEET-TSCE---EECSEEEECCGGG
T ss_pred             HhhcCCCCCCcceEEcHHHHHHHHHHHHHhcCCcEEEEC-eEeEEEEcCCCCEEEEEEC-CCCE---EECCEEEECCCCc
Confidence                    01    011        22233349999999 99999886554  567787 8876   9999999999999


Q ss_pred             hHHHHHh
Q psy9141         157 SGVRKCL  163 (379)
Q Consensus       157 S~vr~~l  163 (379)
                      |.+++..
T Consensus       252 S~~~~~~  258 (550)
T 2e4g_A          252 GLLINKA  258 (550)
T ss_dssp             CCCCCCC
T ss_pred             hhhHHHH
Confidence            9985444

>2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A*

Probab=99.84  E-value=1.2e-20  Score=191.05  Aligned_cols=151  Identities=16%  Similarity=0.218  Sum_probs=98.8

Q ss_pred             CCCCCCCcEEEECCChHHHHHHHHHHh---CCCcEEEEccCCCCCCCCCCCCcccccccCHHHHH-HHHHCCChHH--HH
Q psy9141           1 MKCNSKKSVVIVGGGLVGSLSACMFAK---NQYEVNLYEAREDIRNSGLSEGKSINLALSVRGRE-ALRRIGLEDK--LL   74 (379)
Q Consensus         1 M~~m~~~dVvIVGaGpaGl~~A~~La~---~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~-~l~~lGl~~~--l~   74 (379)
                      |+ |+.+||+|||||++|+++|+.|++   .|++|+|||+.+.+...   .|.    ++.+.+.. +++.+|+.+.  +.
T Consensus         1 M~-~~~~dVvIVGgG~aGl~aA~~La~~~~~G~~V~liE~~~~~~~~---~g~----~~~~~~~~~~l~~lG~~~~~~~~   72 (538)
T 2aqj_A            1 MN-KPIKNIVIVGGGTAGWMAASYLVRALQQQANITLIESAAIPRIG---VGE----ATIPSLQKVFFDFLGIPEREWMP   72 (538)
T ss_dssp             -C-CBCCEEEEECCSHHHHHHHHHHHHHCCSSCEEEEEECSSSCCCC---SCE----ECCTHHHHHTHHHHTCCHHHHGG
T ss_pred             CC-CCCCeEEEECCCHHHHHHHHHHHhhcCCCCEEEEECCCCCCCcC---CCc----ccchhHHHHHHHHhCCCHHHHHH
Confidence            53 456899999999999999999999   99999999997644321   132    46788888 9999998765  33


Q ss_pred             hCCCCce-eeEEE---------------ecCCcEE---------------------E-----------------------
Q psy9141          75 AHGIPMR-ARMIH---------------GQNGKLR---------------------E-----------------------   94 (379)
Q Consensus        75 ~~~~~~~-~~~~~---------------~~~g~~~---------------------~-----------------------   94 (379)
                      ....... +..+.               ...|...                     .                       
T Consensus        73 ~~~~~~~~g~~~~~w~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~  152 (538)
T 2aqj_A           73 QVNGAFKAAIKFVNWRKSPDPSRDDHFYHLFGNVPNCDGVPLTHYWLRKREQGFQQPMEYACYPQPGALDGKLAPCLSDG  152 (538)
T ss_dssp             GGTCEEECEEEEESCSSSCCTTSCCEEEEESSCCCEETTEEHHHHHHHHHHTTCCSCHHHHHCSCHHHHHTTBCSBCTTC
T ss_pred             hcCchhhCCccccCcCcccccCCCCceECCCCccCccccCchhHHHHHhcccccccCccccccccccHhhhccchHhhcC
Confidence            2222221 11111               1111000                     0                       


Q ss_pred             ---eeCCCCCcH-------HHHhcCCCCeEEeCceEEEEEecCCe--EEEEEccCCceeEEEeecEEEecCCCChHHHHH
Q psy9141          95 ---IPYDPVHNQ-------VELEQYPDCNIYFQHKLINLDVNSGN--VTFYRTEDNSETKITDNQLIIGADGAYSGVRKC  162 (379)
Q Consensus        95 ---~~~~~~~~~-------~~~~~~~gv~i~~~~~v~~i~~~~~~--v~v~~~~~G~~~~~i~adlVV~AdG~~S~vr~~  162 (379)
                         .++.....+       .......|++++++ +|++++.++++  +.+++. +|++   ++||+||+|||.+|.+|+.
T Consensus       153 ~~~~~~~~~i~~~~l~~~L~~~a~~~gv~~~~~-~v~~i~~~~~g~~~~v~~~-~g~~---i~ad~vV~A~G~~s~~~~~  227 (538)
T 2aqj_A          153 TRQMSHAWHFDAHLVADFLKRWAVERGVNRVVD-EVVDVRLNNRGYISNLLTK-EGRT---LEADLFIDCSGMRGLLINQ  227 (538)
T ss_dssp             CBCSCCEEEECHHHHHHHHHHHHHHTTCEEEEC-CEEEEEECTTSCEEEEEET-TSCE---ECCSEEEECCGGGCCCCCC
T ss_pred             CcCCCccEEEeHHHHHHHHHHHHHHCCCEEEEe-eEeEEEEcCCCcEEEEEEC-CCcE---EEeCEEEECCCCchhhHHH
Confidence               000000011       12222368999999 89999886553  567777 8876   9999999999999999765


Q ss_pred             hh
Q psy9141         163 LM  164 (379)
Q Consensus       163 l~  164 (379)
                      +.
T Consensus       228 ~l  229 (538)
T 2aqj_A          228 AL  229 (538)
T ss_dssp             CT
T ss_pred             Hh
Confidence            53

>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A*

Probab=99.83  E-value=6.9e-19  Score=179.76  Aligned_cols=147  Identities=20%  Similarity=0.211  Sum_probs=94.4

Q ss_pred             CCcEEEECCChHHHHHHHHHHhC------CCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCC
Q psy9141           6 KKSVVIVGGGLVGSLSACMFAKN------QYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIP   79 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La~~------G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~   79 (379)
                      ++||+||||||+|+++|+.|++.      |++|+||||.+.+... ...|.    .+.+++++.|  +.-|..   .+.+
T Consensus        35 ~~DVvIVGaG~aGlaaA~~La~~~~~~~~G~~V~vlEk~~~~g~~-~~~g~----~l~~~~l~~l--l~~~~~---~g~~  104 (584)
T 2gmh_A           35 EADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHIGAH-TLSGA----CLDPRAFEEL--FPDWKE---KGAP  104 (584)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSSTTTT-CCCCC----EECTHHHHHH--CTTHHH---HTCC
T ss_pred             CCCEEEECcCHHHHHHHHHHHhcccccCCCCcEEEEeCCCCCCCc-ccccc----ccCHHHHHHH--HHHHHh---cCCc
Confidence            48999999999999999999999      9999999999766432 11232    3677777665  333432   2333


Q ss_pred             ce------eeEEEecCCcEEEeeC-CC--C-------CcH-------HHHhcCCCCeEEeCceEEEEEecCC-eEE-EEE
Q psy9141          80 MR------ARMIHGQNGKLREIPY-DP--V-------HNQ-------VELEQYPDCNIYFQHKLINLDVNSG-NVT-FYR  134 (379)
Q Consensus        80 ~~------~~~~~~~~g~~~~~~~-~~--~-------~~~-------~~~~~~~gv~i~~~~~v~~i~~~~~-~v~-v~~  134 (379)
                      +.      ...+....+. ..+++ ..  .       ..+       ....+..|++|+++++|+++..+++ .+. |++
T Consensus       105 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~g~~v~~l~~~~~g~V~gV~~  183 (584)
T 2gmh_A          105 LNTPVTEDRFGILTEKYR-IPVPILPGLPMNNHGNYVVRLGHLVSWMGEQAEALGVEVYPGYAAAEILFHEDGSVKGIAT  183 (584)
T ss_dssp             CCEECCEEEEEEECSSCE-EECCCCTTSTTCCTTCEECCHHHHHHHHHHHHHHTTCEEETTCCEEEEEECTTSSEEEEEE
T ss_pred             eeeeechhheeeeccCCC-ccccccCccccccCCCEEEeHHHHHHHHHHHHHHcCCEEEcCCEEEEEEEcCCCCEEEEEe
Confidence            22      1222222221 12221 00  0       011       1222234999999999999988764 454 655


Q ss_pred             cc-----CCce-------eEEEeecEEEecCCCChHHHHHhh
Q psy9141         135 TE-----DNSE-------TKITDNQLIIGADGAYSGVRKCLM  164 (379)
Q Consensus       135 ~~-----~G~~-------~~~i~adlVV~AdG~~S~vr~~l~  164 (379)
                      .+     +|+.       .+ ++||+||+|||.+|.+|+++.
T Consensus       184 ~~~g~~~~G~~~~~~~~g~~-i~Ad~VV~AdG~~S~vr~~l~  224 (584)
T 2gmh_A          184 NDVGIQKDGAPKTTFERGLE-LHAKVTIFAEGCHGHLAKQLY  224 (584)
T ss_dssp             CCEEECTTSCEEEEEECCCE-EECSEEEECCCTTCHHHHHHH
T ss_pred             CCccccCCCCcccccCCceE-EECCEEEEeeCCCchHHHHHH
Confidence            41     3421       23 999999999999999999873

>2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A*

Probab=99.82  E-value=8e-20  Score=183.82  Aligned_cols=145  Identities=17%  Similarity=0.181  Sum_probs=94.2

Q ss_pred             CcEEEECCChHHHHHHHHHHh---CCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHH--HHhCCCCce
Q psy9141           7 KSVVIVGGGLVGSLSACMFAK---NQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDK--LLAHGIPMR   81 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~---~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~--l~~~~~~~~   81 (379)
                      +||+|||||++|+++|+.|++   .|++|+|||+.+.+..     +.+.  ++.+...++++.+|+++.  +........
T Consensus         3 ~dVvIVGgG~aGl~~A~~La~~~~~G~~V~lvE~~~~~~~-----~~g~--~~~~~~~~~l~~lgi~~~~~~~~~~~~~~   75 (511)
T 2weu_A            3 RSVVIVGGGTAGWMTASYLKAAFDDRIDVTLVESGNVRRI-----GVGE--ATFSTVRHFFDYLGLDEREWLPRCAGGYK   75 (511)
T ss_dssp             CEEEEECCHHHHHHHHHHHHHHHGGGSEEEEEEC------------CCE--ECCTTHHHHHHHHTCCHHHHHHHTTCEEE
T ss_pred             ceEEEECCCHHHHHHHHHHHhhcCCCCEEEEEecCCCCce-----eecc--ccCcchHHHHHHcCCCHHHHHHHcCCeEe
Confidence            699999999999999999999   9999999999864321     2222  466888899999999875  444332221


Q ss_pred             -eeEEE----------ecCCc-------------------E-E----------------------EeeC----C------
Q psy9141          82 -ARMIH----------GQNGK-------------------L-R----------------------EIPY----D------   98 (379)
Q Consensus        82 -~~~~~----------~~~g~-------------------~-~----------------------~~~~----~------   98 (379)
                       +..+.          ...+.                   . .                      ...|    .      
T Consensus        76 ~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  155 (511)
T 2weu_A           76 LGIRFENWSEPGEYFYHPFERLRVVDGFNMAEWWLAVGDRRTSFSEACYLTHRLCEAKRAPRMLDGSLFASQVDESLGRS  155 (511)
T ss_dssp             CEEEEESSSSTTCEEEEESCCCCEETTEEHHHHHHHHC----CHHHHHCHHHHHHHTTBCSBCTTSCBCC------CCSC
T ss_pred             ccceecCCCCCCCceEcCCCCCCCCCCCchHHHHHhccccccCcccccccccCHHHhhhhHHhHhcCCcccccccccccc
Confidence             11111          00010                   0 0                      0011    1      


Q ss_pred             --------CCC----cH-------HHHhcCCCCeEEeCceEEEEEecCCe--EEEEEccCCceeEEEeecEEEecCCCCh
Q psy9141          99 --------PVH----NQ-------VELEQYPDCNIYFQHKLINLDVNSGN--VTFYRTEDNSETKITDNQLIIGADGAYS  157 (379)
Q Consensus        99 --------~~~----~~-------~~~~~~~gv~i~~~~~v~~i~~~~~~--v~v~~~~~G~~~~~i~adlVV~AdG~~S  157 (379)
                              ...    .+       .......|++++++ +|++++.++++  +.+++. +|++   ++||+||+|||.+|
T Consensus       156 ~~~~~~~~~~~~~~~~~~~l~~~L~~~a~~~gv~~~~~-~v~~i~~~~~~~~~~v~~~-~g~~---~~ad~vV~A~G~~S  230 (511)
T 2weu_A          156 TLAEQRAQFPYAYHFDADEVARYLSEYAIARGVRHVVD-DVQHVGQDERGWISGVHTK-QHGE---ISGDLFVDCTGFRG  230 (511)
T ss_dssp             CGGGCCSCCSCEEEECHHHHHHHHHHHHHHTTCEEEEC-CEEEEEECTTSCEEEEEES-SSCE---EECSEEEECCGGGC
T ss_pred             ccccCcCCCCeeEEEcHHHHHHHHHHHHHHCCCEEEEC-eEeEEEEcCCCCEEEEEEC-CCCE---EEcCEEEECCCcch
Confidence                    111    11       12222368999999 99999986554  667787 8876   99999999999999


Q ss_pred             HHHHHh
Q psy9141         158 GVRKCL  163 (379)
Q Consensus       158 ~vr~~l  163 (379)
                      .+++.+
T Consensus       231 ~~~~~~  236 (511)
T 2weu_A          231 LLINQT  236 (511)
T ss_dssp             CCCCCC
T ss_pred             HHHHHH
Confidence            996554

>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida}

Probab=99.79  E-value=3.5e-20  Score=182.63  Aligned_cols=155  Identities=13%  Similarity=0.101  Sum_probs=85.5

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccc-cccCHHHHHHHHHCCC--hHHHHhCCCCceee
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSIN-LALSVRGREALRRIGL--EDKLLAHGIPMRAR   83 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~-~al~~~~~~~l~~lGl--~~~l~~~~~~~~~~   83 (379)
                      +||+||||||+|+++|+.|+++|++|+|||+.+.....   .|+... ..+...+...++.+|+  |....   .++.+.
T Consensus        23 ~~ViIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~---~g~~~~~~~~~~~~~~~~~~lg~~~~~~~~---~~~~~~   96 (430)
T 3ihm_A           23 KRIGIVGAGTAGLHLGLFLRQHDVDVTVYTDRKPDEYS---GLRLLNTVAHNAVTVQREVALDVNEWPSEE---FGYFGH   96 (430)
T ss_dssp             CEEEEECCHHHHHHHHHHHHHTTCEEEEEESCCGGGST---TSCCCCCCCBCHHHHHHHHHTTCCCSCHHH---HCEEEE
T ss_pred             CCEEEECCcHHHHHHHHHHHHCCCeEEEEcCCChHhhc---ccccccchhccchhhhhhhhcChhhhhhhc---ccccce
Confidence            79999999999999999999999999999998733211   122110 1356778888888864  54432   234444


Q ss_pred             EEEecCCcEEEe-----eCCCCCcH-------HHHhcCCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEEEe
Q psy9141          84 MIHGQNGKLREI-----PYDPVHNQ-------VELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIG  151 (379)
Q Consensus        84 ~~~~~~g~~~~~-----~~~~~~~~-------~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlVV~  151 (379)
                      .+.........+     .......+       ....+..|+++++.. +            ... +.+... .++|+||+
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~~~~~Gv~v~~~~-v------------~~~-~l~~~~-~~ad~VV~  161 (430)
T 3ihm_A           97 YYYVGGPQPMRFYGDLKAPSRAVDYRLYQPMLMRALEARGGKFCYDA-V------------SAE-DLEGLS-EQYDLLVV  161 (430)
T ss_dssp             EEEECSSSCEEEEEEEEEEEBEECHHHHHHHHHHHHHHTTCEEEECC-C------------CGG-GHHHHH-TTSSEEEE
T ss_pred             eEEECCCCccccchhcCCcceeecHHHHHHHHHHHHHHcCCEEEEEe-c------------chh-hhhhhc-ccCCEEEE
Confidence            443322211000     00111111       112223577776531 1            001 111111 46899999


Q ss_pred             cCCCChHHHHHhhh--cCCCCccceeeeeeeEE
Q psy9141         152 ADGAYSGVRKCLMK--QSMFNYSQTYIEHGYME  182 (379)
Q Consensus       152 AdG~~S~vr~~l~~--~~~~~~~~~~i~~~~~~  182 (379)
                      |||.+|.++.+...  ....++.+..+...++.
T Consensus       162 AdG~~S~~~~~~~~~~~~~~~~p~r~~~~~~~~  194 (430)
T 3ihm_A          162 CTGKYALGKVFEKQSENSPFEKPQRALCVGLFK  194 (430)
T ss_dssp             CCCCTTGGGGSCBCGGGCCCSSCSSEEEEEEEE
T ss_pred             CCCCcchHHhccCCCCCCcccCCCeeEEEEEEc
Confidence            99999988754422  22334444444444443

>2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A*

Probab=99.72  E-value=1.5e-17  Score=166.67  Aligned_cols=140  Identities=16%  Similarity=0.123  Sum_probs=95.3

Q ss_pred             CCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeE
Q psy9141           5 SKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARM   84 (379)
Q Consensus         5 ~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~   84 (379)
                      ..+||+||||||+|+++|+.|++.|++|+|||+.+....     .+.+  .+.+.+.+.|+.+|+++......       
T Consensus        91 ~~~dVvIVGgG~aGl~aA~~La~~G~~V~liEk~~~~g~-----~~~~--~~~~~~~~~l~~~g~~~~~~~~~-------  156 (497)
T 2bry_A           91 TNTKCLVVGAGPCGLRAAVELALLGARVVLVEKRIKFSR-----HNVL--HLWPFTIHDLRALGAKKFYGRFC-------  156 (497)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCSSCCC-----CCEE--ECCHHHHHHHHTTTHHHHCTTTT-------
T ss_pred             CCCCEEEECccHHHHHHHHHHHHCCCeEEEEEeccccCC-----CCcc--cCChhHHHHHHHcCCcccccccc-------
Confidence            368999999999999999999999999999999876532     2222  56789999999999865421110       


Q ss_pred             EEecCCcEEEeeCCCCCcH-HHHhcCCCCeEEeCceEEEEEec---CCeEEEEEcc--CCceeEEEeecEEEecCCCChH
Q psy9141          85 IHGQNGKLREIPYDPVHNQ-VELEQYPDCNIYFQHKLINLDVN---SGNVTFYRTE--DNSETKITDNQLIIGADGAYSG  158 (379)
Q Consensus        85 ~~~~~g~~~~~~~~~~~~~-~~~~~~~gv~i~~~~~v~~i~~~---~~~v~v~~~~--~G~~~~~i~adlVV~AdG~~S~  158 (379)
                          .+....+........ ....+..+++|+++++|++++.+   ++.+.+++..  +|+..+ ++||+||+|||.+|.
T Consensus       157 ----~~~~~~~~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~~~~~~v~~~~~~~g~~~~-i~ad~VV~A~G~~S~  231 (497)
T 2bry_A          157 ----TGTLDHISIRQLQLLLLKVALLLGVEIHWGVKFTGLQPPPRKGSGWRAQLQPNPPAQLAS-YEFDVLISAAGGKFV  231 (497)
T ss_dssp             ----CTTCCEEEHHHHHHHHHHHHHHTTCEEEESCEEEEEECCCSTTCCBEEEEESCCCHHHHT-CCBSEEEECCCTTCC
T ss_pred             ----ccccccCCHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEecCCCCEEEEEEEECCCCCEEE-EEcCEEEECCCCCcc
Confidence                000000000000000 12222368999999999999874   3456676641  452123 899999999999999


Q ss_pred             HHHHh
Q psy9141         159 VRKCL  163 (379)
Q Consensus       159 vr~~l  163 (379)
                      +|+..
T Consensus       232 ~r~~~  236 (497)
T 2bry_A          232 PEGFT  236 (497)
T ss_dssp             CTTCE
T ss_pred             ccccc
Confidence            98765

>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti}

Probab=99.40  E-value=8.1e-13  Score=129.31  Aligned_cols=142  Identities=18%  Similarity=0.201  Sum_probs=85.5

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCC--CCccc--cc---------ccCHHHHHHHHHCCCh
Q psy9141           4 NSKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLS--EGKSI--NL---------ALSVRGREALRRIGLE   70 (379)
Q Consensus         4 m~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~--~g~~i--~~---------al~~~~~~~l~~lGl~   70 (379)
                      +.++||+|||||++|+++|+.|++.|.+|+|+|+.+.+......  .|+..  +.         .........+..+..+
T Consensus        25 ~~~~dViIIGgG~AGl~aA~~La~~G~~V~llEk~~~~g~~~~~sGgg~~n~t~~~~~~~~~~~~~~~~~~~~l~~~~~~  104 (417)
T 3v76_A           25 AEKQDVVIIGAGAAGMMCAIEAGKRGRRVLVIDHARAPGEKIRISGGGRCNFTNIHASPRNFLSGNPHFCKSALARYRPQ  104 (417)
T ss_dssp             ---CCEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHSGGGTCEEEETTCSGGGEEESSTTTTHHHHHHSCHH
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCceeEEcCCCceeccCCCCCHHHHhhcCHHHHHHHHHhcCHH
Confidence            35689999999999999999999999999999999865311000  00000  00         0001112334444322


Q ss_pred             H---HHHhCCCCceeeEEEecCCcEEEeeCCCCCcH-----HHHhcCCCCeEEeCceEEEEEecCCeEEEEEccCCceeE
Q psy9141          71 D---KLLAHGIPMRARMIHGQNGKLREIPYDPVHNQ-----VELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETK  142 (379)
Q Consensus        71 ~---~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-----~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~  142 (379)
                      +   .+...+.+..    ....+...  + ......     ....+..+++++++++|++++.+++++.+.+. +| +  
T Consensus       105 ~~~~~~~~~Gi~~~----~~~~g~~~--~-~~~~~~l~~~L~~~l~~~Gv~i~~~~~V~~i~~~~~~~~V~~~-~g-~--  173 (417)
T 3v76_A          105 DFVALVERHGIGWH----EKTLGQLF--C-DHSAKDIIRMLMAEMKEAGVQLRLETSIGEVERTASGFRVTTS-AG-T--  173 (417)
T ss_dssp             HHHHHHHHTTCCEE----ECSTTEEE--E-SSCHHHHHHHHHHHHHHHTCEEECSCCEEEEEEETTEEEEEET-TE-E--
T ss_pred             HHHHHHHHcCCCcE----EeeCCEEe--e-CCCHHHHHHHHHHHHHHCCCEEEECCEEEEEEEeCCEEEEEEC-Cc-E--
Confidence            2   1222232211    11222221  1 111011     12222358999999999999998889999887 77 4  


Q ss_pred             EEeecEEEecCCCCh
Q psy9141         143 ITDNQLIIGADGAYS  157 (379)
Q Consensus       143 ~i~adlVV~AdG~~S  157 (379)
                       ++||.||.|+|.+|
T Consensus       174 -i~ad~VIlAtG~~S  187 (417)
T 3v76_A          174 -VDAASLVVASGGKS  187 (417)
T ss_dssp             -EEESEEEECCCCSS
T ss_pred             -EEeeEEEECCCCcc
Confidence             99999999999999

>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*

Probab=99.37  E-value=1.1e-12  Score=128.79  Aligned_cols=47  Identities=15%  Similarity=0.130  Sum_probs=41.9

Q ss_pred             cCCCCeEEeCc---eEEEEEecCCeEE-EEEccCCceeEEEeecEEEecCCCChH
Q psy9141         108 QYPDCNIYFQH---KLINLDVNSGNVT-FYRTEDNSETKITDNQLIIGADGAYSG  158 (379)
Q Consensus       108 ~~~gv~i~~~~---~v~~i~~~~~~v~-v~~~~~G~~~~~i~adlVV~AdG~~S~  158 (379)
                      +..|++|++++   +|++++.++++++ |++. +|++   ++||.||.|+|.+|.
T Consensus       172 ~~~Gv~i~~~t~~~~V~~i~~~~~~v~gV~t~-~G~~---i~Ad~VV~AtG~~s~  222 (438)
T 3dje_A          172 QRMGVKFVTGTPQGRVVTLIFENNDVKGAVTA-DGKI---WRAERTFLCAGASAG  222 (438)
T ss_dssp             HHTTCEEEESTTTTCEEEEEEETTEEEEEEET-TTEE---EECSEEEECCGGGGG
T ss_pred             HhcCCEEEeCCcCceEEEEEecCCeEEEEEEC-CCCE---EECCEEEECCCCChh
Confidence            34699999999   9999999888888 8888 8876   999999999999984

>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis}

Probab=99.36  E-value=5.2e-12  Score=120.39  Aligned_cols=53  Identities=13%  Similarity=0.155  Sum_probs=42.9

Q ss_pred             cCCCCeEEeCceEEEEEecCCe-EEEEEccCCceeEEEeecEEEecCCCChH-HHHH
Q psy9141         108 QYPDCNIYFQHKLINLDVNSGN-VTFYRTEDNSETKITDNQLIIGADGAYSG-VRKC  162 (379)
Q Consensus       108 ~~~gv~i~~~~~v~~i~~~~~~-v~v~~~~~G~~~~~i~adlVV~AdG~~S~-vr~~  162 (379)
                      +..|++++++++|++++.++++ +.+.+. +|+..+ ++||.||.|+|.+|. +.+.
T Consensus       161 ~~~Gv~i~~~~~v~~i~~~~~~~~~v~~~-~g~~~~-~~a~~VV~A~G~~s~~l~~~  215 (369)
T 3dme_A          161 ESDGAQLVFHTPLIAGRVRPEGGFELDFG-GAEPMT-LSCRVLINAAGLHAPGLARR  215 (369)
T ss_dssp             HHTTCEEECSCCEEEEEECTTSSEEEEEC-TTSCEE-EEEEEEEECCGGGHHHHHHT
T ss_pred             HHCCCEEECCCEEEEEEEcCCceEEEEEC-CCceeE-EEeCEEEECCCcchHHHHHH
Confidence            3469999999999999988765 888887 885334 999999999999984 4443

>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6

Probab=99.36  E-value=1.2e-12  Score=121.50  Aligned_cols=143  Identities=15%  Similarity=0.197  Sum_probs=87.6

Q ss_pred             CCCcEEEECCChHHHHHHHHHHhC-CCcEEEEccCCCCCCCCCCCCccc-ccccCHHHHHHHHHCCChHHHHhCCCCcee
Q psy9141           5 SKKSVVIVGGGLVGSLSACMFAKN-QYEVNLYEAREDIRNSGLSEGKSI-NLALSVRGREALRRIGLEDKLLAHGIPMRA   82 (379)
Q Consensus         5 ~~~dVvIVGaGpaGl~~A~~La~~-G~~V~viE~~~~~~~~~~~~g~~i-~~al~~~~~~~l~~lGl~~~l~~~~~~~~~   82 (379)
                      ..+||+||||||+|+++|+.|++. |.+|+|+|+.+.+.......+..+ .+.+.....+.|+++|+         +...
T Consensus        38 ~~~dVvIIGgG~aGl~aA~~la~~~G~~V~viEk~~~~gg~~~~~~~~~~~~~~~~~~~~~l~~~G~---------~~~~  108 (284)
T 1rp0_A           38 AETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGGGAWLGGQLFSAMIVRKPAHLFLDEIGV---------AYDE  108 (284)
T ss_dssp             TEEEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSSCCTTTTCCSTTCCCEEEETTTHHHHHHHTC---------CCEE
T ss_pred             cccCEEEECccHHHHHHHHHHHHcCCCeEEEEECCCCCCCceecCCcchHHHHcCcHHHHHHHHcCC---------Cccc
Confidence            457999999999999999999997 999999999976542211111110 00122334555555553         2110


Q ss_pred             eEEEecCCcEEEeeCCCCCc-H--HHHhcCCCCeEEeCceEEEEEecCCeEE-EEEc------c--C---CceeEEEeec
Q psy9141          83 RMIHGQNGKLREIPYDPVHN-Q--VELEQYPDCNIYFQHKLINLDVNSGNVT-FYRT------E--D---NSETKITDNQ  147 (379)
Q Consensus        83 ~~~~~~~g~~~~~~~~~~~~-~--~~~~~~~gv~i~~~~~v~~i~~~~~~v~-v~~~------~--~---G~~~~~i~ad  147 (379)
                            .+............ .  +.+.+..+++++++++|+++..+++.+. +.+.      .  +   |+..+ ++||
T Consensus       109 ------~~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~V~~i~~~~~~v~gv~~~~~~~~~~~~~g~~g~~~~-i~ad  181 (284)
T 1rp0_A          109 ------QDTYVVVKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGNRVGGVVTNWALVAQNHHTQSCMDPNV-MEAK  181 (284)
T ss_dssp             ------CSSEEEESCHHHHHHHHHHHHHTSTTEEEEETEEEEEEEEETTEEEEEEEEEHHHHTCTTTSSCCCCEE-EEEE
T ss_pred             ------CCCEEEecCHHHHHHHHHHHHHhcCCCEEEcCcEEEEEEecCCeEEEEEEeccccccccCccccCceEE-EECC
Confidence                  11111000000000 0  2334457999999999999998777542 3321      0  1   33344 9999


Q ss_pred             EEEecCCCChHHHHHh
Q psy9141         148 LIIGADGAYSGVRKCL  163 (379)
Q Consensus       148 lVV~AdG~~S~vr~~l  163 (379)
                      .||.|+|.+|.++.+.
T Consensus       182 ~VV~AtG~~s~~~~~~  197 (284)
T 1rp0_A          182 IVVSSCGHDGPFGATG  197 (284)
T ss_dssp             EEEECCCSSSTTTTHH
T ss_pred             EEEECCCCchHHHHHH
Confidence            9999999999888765

>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus}

Probab=99.36  E-value=6e-12  Score=126.89  Aligned_cols=132  Identities=16%  Similarity=0.227  Sum_probs=81.9

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCC-------------------C--------CCCCCcccc-c---
Q psy9141           6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRN-------------------S--------GLSEGKSIN-L---   54 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~-------------------~--------~~~~g~~i~-~---   54 (379)
                      ++||+||||||+|+++|+.|++.|++|+|+|+.+....                   .        ...+|.-.. +   
T Consensus       107 ~~DVVIVGgGpaGL~aA~~La~~G~kV~VlEr~~~~~~R~~~~~g~w~~~~~~~~~~i~~g~gGag~~sdgkl~~~i~~~  186 (549)
T 3nlc_A          107 TERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKEVRERTKDTFGFWRKRTLNPESNVQFGEGGAGTFSDGKLYSQVKDP  186 (549)
T ss_dssp             CCCCEEECCSHHHHHHHHHHHHTTCCCEEECSSCCHHHHHHHHHHHHHHCCCCTTSSSSSSTTGGGTTSCCCCCCCSCCT
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCeEEEEEccCcccccccchhcccccccccccccceeccCCcccccCCceEEEeccc
Confidence            47999999999999999999999999999999864310                   0        000010000 0   


Q ss_pred             -ccCHHHHHHHHHCCChHHHHhCCCCceeeEEEecCCcEEEeeCCC-CCcH------HHHhcCCCCeEEeCceEEEEEec
Q psy9141          55 -ALSVRGREALRRIGLEDKLLAHGIPMRARMIHGQNGKLREIPYDP-VHNQ------VELEQYPDCNIYFQHKLINLDVN  126 (379)
Q Consensus        55 -al~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~------~~~~~~~gv~i~~~~~v~~i~~~  126 (379)
                       .......+.+...|....+....             .    +... ....      ....+..|++|+++++|++++.+
T Consensus       187 ~~~~~~v~~~~~~~G~~~~i~~~~-------------~----p~~G~~~~~~l~~~L~~~l~~~Gv~I~~~t~V~~I~~~  249 (549)
T 3nlc_A          187 NFYGRKVITEFVEAGAPEEILYVS-------------K----PHIGTFKLVTMIEKMRATIIELGGEIRFSTRVDDLHME  249 (549)
T ss_dssp             TCHHHHHHHHHHHTTCCGGGGTBS-------------S----CCCCHHHHHHHHHHHHHHHHHTTCEEESSCCEEEEEES
T ss_pred             cccHHHHHHHHHHcCCCceEeecc-------------c----cccccchHHHHHHHHHHHHHhcCCEEEeCCEEEEEEEe
Confidence             00022233333333322111100             0    0000 0000      12222359999999999999988


Q ss_pred             CCeEE-EEEccCCceeEEEeecEEEecCCCChH
Q psy9141         127 SGNVT-FYRTEDNSETKITDNQLIIGADGAYSG  158 (379)
Q Consensus       127 ~~~v~-v~~~~~G~~~~~i~adlVV~AdG~~S~  158 (379)
                      ++++. +++. +|++   ++||+||.|+|++|.
T Consensus       250 ~~~v~gV~l~-~G~~---i~Ad~VVlA~G~~s~  278 (549)
T 3nlc_A          250 DGQITGVTLS-NGEE---IKSRHVVLAVGHSAR  278 (549)
T ss_dssp             SSBEEEEEET-TSCE---EECSCEEECCCTTCH
T ss_pred             CCEEEEEEEC-CCCE---EECCEEEECCCCChh
Confidence            77655 7888 8887   999999999999995

>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1

Probab=99.35  E-value=2.7e-12  Score=126.79  Aligned_cols=141  Identities=14%  Similarity=0.168  Sum_probs=82.7

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCH--HHHHHHHHCCC--------------
Q psy9141           6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSV--RGREALRRIGL--------------   69 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~--~~~~~l~~lGl--------------   69 (379)
                      ++||+|||||++|+++|+.|++.|.+|+|+|+.+.+.......+.+.. .+..  ....+++.++.              
T Consensus        26 ~~dVvIIGgG~aGl~aA~~la~~G~~V~llEk~~~~g~~~~~sg~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  104 (447)
T 2i0z_A           26 HYDVIVIGGGPSGLMAAIGAAEEGANVLLLDKGNKLGRKLAISGGGRC-NVTNRLPLDEIVKHIPGNGRFLYSAFSIFNN  104 (447)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHTGGGTC-CCEECSCHHHHHHTCTBTGGGGHHHHHHSCH
T ss_pred             CCCEEEECCcHHHHHHHHHHHHCCCCEEEEECCCCCCceeEEeCCCce-eccCcccHHHHHHHhccChHHHHHHHHhcCH
Confidence            589999999999999999999999999999998754311000011100 0000  00112222210              


Q ss_pred             ---hHHHHhCCCCceeeEEEecCCcEEEeeCCCCCcH-----HHHhcCCCCeEEeCceEEEEEecCCe-EEEEEccCCce
Q psy9141          70 ---EDKLLAHGIPMRARMIHGQNGKLREIPYDPVHNQ-----VELEQYPDCNIYFQHKLINLDVNSGN-VTFYRTEDNSE  140 (379)
Q Consensus        70 ---~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-----~~~~~~~gv~i~~~~~v~~i~~~~~~-v~v~~~~~G~~  140 (379)
                         .+.+...+.+..    ....+.  .++.......     ....+..|++|+++++|+++..++++ +.+++. +|++
T Consensus       105 ~~~~~~~~~~G~~~~----~~~~g~--~~p~~~~~~~l~~~L~~~~~~~GV~i~~~~~V~~i~~~~~~v~~V~~~-~G~~  177 (447)
T 2i0z_A          105 EDIITFFENLGVKLK----EEDHGR--MFPVSNKAQSVVDALLTRLKDLGVKIRTNTPVETIEYENGQTKAVILQ-TGEV  177 (447)
T ss_dssp             HHHHHHHHHTTCCEE----ECGGGE--EEETTCCHHHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEET-TCCE
T ss_pred             HHHHHHHHhcCCceE----EeeCCE--EECCCCCHHHHHHHHHHHHHHCCCEEEeCcEEEEEEecCCcEEEEEEC-CCCE
Confidence               011111222211    011111  1221111011     12223369999999999999987776 668888 8876


Q ss_pred             eEEEeecEEEecCCCCh
Q psy9141         141 TKITDNQLIIGADGAYS  157 (379)
Q Consensus       141 ~~~i~adlVV~AdG~~S  157 (379)
                         ++||.||.|+|.+|
T Consensus       178 ---i~Ad~VVlAtGg~s  191 (447)
T 2i0z_A          178 ---LETNHVVIAVGGKS  191 (447)
T ss_dssp             ---EECSCEEECCCCSS
T ss_pred             ---EECCEEEECCCCCc
Confidence               99999999999999

>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A*

Probab=99.34  E-value=1e-11  Score=120.31  Aligned_cols=50  Identities=12%  Similarity=0.128  Sum_probs=41.4

Q ss_pred             CCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEEEecCCCCh-HHHHHh
Q psy9141         109 YPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAYS-GVRKCL  163 (379)
Q Consensus       109 ~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlVV~AdG~~S-~vr~~l  163 (379)
                      ..|++|+++++|++++.+++++++++. +| +   ++||.||.|+|.+| .+++.+
T Consensus       165 ~~Gv~i~~~~~V~~i~~~~~~v~v~t~-~g-~---i~a~~VV~A~G~~s~~l~~~~  215 (397)
T 2oln_A          165 AAGATLRAGETVTELVPDADGVSVTTD-RG-T---YRAGKVVLACGPYTNDLLEPL  215 (397)
T ss_dssp             HTTCEEEESCCEEEEEEETTEEEEEES-SC-E---EEEEEEEECCGGGHHHHHGGG
T ss_pred             HcCCEEECCCEEEEEEEcCCeEEEEEC-CC-E---EEcCEEEEcCCcChHHHhhhc
Confidence            468999999999999998888888776 55 4   99999999999995 455543

>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*

Probab=99.33  E-value=5.9e-12  Score=130.70  Aligned_cols=149  Identities=19%  Similarity=0.276  Sum_probs=87.4

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCC-CCCCCCcccccccC--------------HHHHHHHHHCCCh
Q psy9141           6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRN-SGLSEGKSINLALS--------------VRGREALRRIGLE   70 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~-~~~~~g~~i~~al~--------------~~~~~~l~~lGl~   70 (379)
                      .+||+|||||++|+++|+.|+++|++|+|||+.+.+.. .+...+..+.....              ..+.++++.+++.
T Consensus       272 ~~DVvIIGgGiaGlsaA~~La~~G~~V~vlEk~~~~g~gaS~~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  351 (676)
T 3ps9_A          272 KREAAIIGGGIASALLSLALLRRGWQVTLYCADEAPALGASGNRQGALYPLLSKHDEALNRFFSNAFTFARRFYDQLPVK  351 (676)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSSCSTTCCSCEEECCCCCSSCHHHHHHHHHHHHHHHHHHHHCCSC
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCcccccCccCCCceecCcCCCCccHHHHHHHHHHHHHHHHHHHCCCC
Confidence            48999999999999999999999999999999764432 11111111110000              1134444444310


Q ss_pred             ---------------------HHHHhCCCCceeeEEEecCCc---------E--EEeeCCCC-CcH------HHHhcCCC
Q psy9141          71 ---------------------DKLLAHGIPMRARMIHGQNGK---------L--REIPYDPV-HNQ------VELEQYPD  111 (379)
Q Consensus        71 ---------------------~~l~~~~~~~~~~~~~~~~g~---------~--~~~~~~~~-~~~------~~~~~~~g  111 (379)
                                           ..+...+.+.....+.+....         .  ...+.... ...      ....+..|
T Consensus       352 ~~~~~~g~l~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~~~~~l~~~~gg~~~p~~g~v~p~~l~~aL~~~a~~~G  431 (676)
T 3ps9_A          352 FDHDWCGVTQLGWDEKSQHKIAQMLSMDLPAELAVAVEANAVEQITGVATNCSGITYPQGGWLCPAELTRNVLELAQQQG  431 (676)
T ss_dssp             CCEECCCEEEECCSHHHHHHHHHHHTSCCCTTTCEEECHHHHHHHHSSCCSSCEEEETTCEEECHHHHHHHHHHHHHHTT
T ss_pred             cCcCcCCeeeecCCHHHHHHHHHHHhcCCcHHHhhhCCHHHHHHhhCCCccCCcEEecCCeeeCHHHHHHHHHHHHHhCC
Confidence                                 001111111111111110000         0  00000000 001      22223468


Q ss_pred             CeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEEEecCCCChH
Q psy9141         112 CNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAYSG  158 (379)
Q Consensus       112 v~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlVV~AdG~~S~  158 (379)
                      ++|+++++|++++.++++|.+++. +|.+   ++||.||.|+|.+|.
T Consensus       432 v~i~~~t~V~~l~~~~~~v~V~t~-~G~~---i~Ad~VVlAtG~~s~  474 (676)
T 3ps9_A          432 LQIYYQYQLQNFSRKDDCWLLNFA-GDQQ---ATHSVVVLANGHQIS  474 (676)
T ss_dssp             CEEEESCCEEEEEEETTEEEEEET-TSCE---EEESEEEECCGGGGG
T ss_pred             CEEEeCCeeeEEEEeCCeEEEEEC-CCCE---EECCEEEECCCcchh
Confidence            999999999999999999999888 8776   999999999999985

>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=99.32  E-value=6.7e-12  Score=120.81  Aligned_cols=51  Identities=4%  Similarity=0.131  Sum_probs=42.3

Q ss_pred             cCCCCeEEeCceEEEEEecCCeEE-EEEccCCceeEEEeecEEEecCCCChH-HHHHh
Q psy9141         108 QYPDCNIYFQHKLINLDVNSGNVT-FYRTEDNSETKITDNQLIIGADGAYSG-VRKCL  163 (379)
Q Consensus       108 ~~~gv~i~~~~~v~~i~~~~~~v~-v~~~~~G~~~~~i~adlVV~AdG~~S~-vr~~l  163 (379)
                      +..|++++++++|++++.++++++ +++. +| +   ++||.||.|+|.+|. +.+.+
T Consensus       160 ~~~Gv~i~~~~~v~~i~~~~~~v~gv~~~-~g-~---i~a~~VV~A~G~~s~~l~~~~  212 (382)
T 1y56_B          160 KEYGAKLLEYTEVKGFLIENNEIKGVKTN-KG-I---IKTGIVVNATNAWANLINAMA  212 (382)
T ss_dssp             HHTTCEEECSCCEEEEEESSSBEEEEEET-TE-E---EECSEEEECCGGGHHHHHHHH
T ss_pred             HHCCCEEECCceEEEEEEECCEEEEEEEC-Cc-E---EECCEEEECcchhHHHHHHHc
Confidence            346899999999999998888887 7776 66 4   999999999999994 45443

>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1

Probab=99.31  E-value=1.5e-11  Score=124.98  Aligned_cols=151  Identities=14%  Similarity=0.144  Sum_probs=90.7

Q ss_pred             CCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCC---------------
Q psy9141           5 SKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGL---------------   69 (379)
Q Consensus         5 ~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl---------------   69 (379)
                      .++||+|||||++|+++|+.|++.|.+|+||||.+.....+...+.++....+    ...+.+|+               
T Consensus       120 ~~~DVvVVG~G~aGl~aA~~la~~G~~V~vlEk~~~~gg~s~~s~gg~~~~~~----~~~~~~g~~ds~~~~~~~~~~~~  195 (566)
T 1qo8_A          120 ETTQVLVVGAGSAGFNASLAAKKAGANVILVDKAPFSGGNSMISAGGMNAVGT----KQQTAHGVEDKVEWFIEDAMKGG  195 (566)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSSCTTGGGCCSCEECSSC----HHHHHTTCCCCHHHHHHHHHHHT
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCcccccCceeEccCC----HHHHHhCCCCCHHHHHHHHHHhc
Confidence            45799999999999999999999999999999998765432222333321111    11111111               


Q ss_pred             -------------------hHHHHhCCCCceeeEEEecCCcE---EEeeCCC-CCcH------HHHhcCCCCeEEeCceE
Q psy9141          70 -------------------EDKLLAHGIPMRARMIHGQNGKL---REIPYDP-VHNQ------VELEQYPDCNIYFQHKL  120 (379)
Q Consensus        70 -------------------~~~l~~~~~~~~~~~~~~~~g~~---~~~~~~~-~~~~------~~~~~~~gv~i~~~~~v  120 (379)
                                         .+.+...+.++...  ....+..   ...+... ..+.      ....+..|++|+++++|
T Consensus       196 ~~~~~~~~~~~~~~~~~~~i~~l~~~Gv~~~~~--~~~~g~~~~r~~~~~~~~~~~~~l~~~L~~~~~~~gv~i~~~~~v  273 (566)
T 1qo8_A          196 RQQNDIKLVTILAEQSADGVQWLESLGANLDDL--KRSGGARVDRTHRPHGGKSSGPEIIDTLRKAAKEQGIDTRLNSRV  273 (566)
T ss_dssp             TTCSCHHHHHHHHHHHHHHHHHHHHTTCCCCEE--ECCTTCSSCCEEECSSSSCHHHHHHHHHHHHHHHTTCCEECSEEE
T ss_pred             CCCCCHHHHHHHHhccHHHHHHHHhcCCccccc--cccCCCCCCceeecCCCCCCHHHHHHHHHHHHHhcCCEEEeCCEE
Confidence                               11122233333211  1111111   1111111 1111      12223358999999999


Q ss_pred             EEEEecC-CeE---EEEEccCCceeEEEeecEEEecCCCChHHHHHh
Q psy9141         121 INLDVNS-GNV---TFYRTEDNSETKITDNQLIIGADGAYSGVRKCL  163 (379)
Q Consensus       121 ~~i~~~~-~~v---~v~~~~~G~~~~~i~adlVV~AdG~~S~vr~~l  163 (379)
                      +++..++ +.+   ++... +|+..+ ++||.||.|+|.+|..++++
T Consensus       274 ~~l~~~~~g~v~Gv~~~~~-~g~~~~-i~A~~VVlAtGg~s~~~~~~  318 (566)
T 1qo8_A          274 VKLVVNDDHSVVGAVVHGK-HTGYYM-IGAKSVVLATGGYGMNKEMI  318 (566)
T ss_dssp             EEEEECTTSBEEEEEEEET-TTEEEE-EEEEEEEECCCCCTTCHHHH
T ss_pred             EEEEECCCCcEEEEEEEeC-CCcEEE-EEcCEEEEecCCcccCHHHH
Confidence            9998877 643   44444 776555 99999999999999887766

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=99.29  E-value=4.4e-12  Score=131.90  Aligned_cols=46  Identities=15%  Similarity=0.099  Sum_probs=40.5

Q ss_pred             CCCCeEEeCceEEEEEecCCeEEEEEccCCc-eeEEEeecEEEecCCCChH
Q psy9141         109 YPDCNIYFQHKLINLDVNSGNVTFYRTEDNS-ETKITDNQLIIGADGAYSG  158 (379)
Q Consensus       109 ~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~-~~~~i~adlVV~AdG~~S~  158 (379)
                      ..|++|+++++|++++.++++|.+++. +|. +   ++||.||.|+|.+|.
T Consensus       424 ~~Gv~i~~~t~V~~l~~~~~~v~V~t~-~G~~~---i~Ad~VVlAtG~~s~  470 (689)
T 3pvc_A          424 QNGMTCHYQHELQRLKRIDSQWQLTFG-QSQAA---KHHATVILATGHRLP  470 (689)
T ss_dssp             HTTCEEEESCCEEEEEECSSSEEEEEC--CCCC---EEESEEEECCGGGTT
T ss_pred             hCCCEEEeCCeEeEEEEeCCeEEEEeC-CCcEE---EECCEEEECCCcchh
Confidence            468999999999999998888988888 776 6   999999999999984

>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A*

Probab=99.29  E-value=2.8e-11  Score=123.16  Aligned_cols=150  Identities=15%  Similarity=0.125  Sum_probs=88.9

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCC----------------
Q psy9141           6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGL----------------   69 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl----------------   69 (379)
                      ++||+|||||++|+++|+.|++.|.+|+||||.+.....+...+.++....+.    ..+++|+                
T Consensus       126 ~~DVvVVGaG~aGl~aA~~la~~G~~V~vlEk~~~~gg~s~~a~gg~~~~~~~----~~~~~g~~ds~~~~~~~~~~~g~  201 (571)
T 1y0p_A          126 TVDVVVVGSGGAGFSAAISATDSGAKVILIEKEPVIGGNAKLAAGGMNAAWTD----QQKAKKITDSPELMFEDTMKGGQ  201 (571)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTTGGGCCSCEECSSCH----HHHHTTCCCCHHHHHHHHHHHTT
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCchhhcCceEEeCCCH----HHHHhCCCCCHHHHHHHHHHhcC
Confidence            58999999999999999999999999999999987653322223333211110    1111111                


Q ss_pred             ------------------hHHHHhCCCCceeeEEEecCCcE---EEeeCC-CCCcH------HHHhcCCCCeEEeCceEE
Q psy9141          70 ------------------EDKLLAHGIPMRARMIHGQNGKL---REIPYD-PVHNQ------VELEQYPDCNIYFQHKLI  121 (379)
Q Consensus        70 ------------------~~~l~~~~~~~~~~~~~~~~g~~---~~~~~~-~~~~~------~~~~~~~gv~i~~~~~v~  121 (379)
                                        .+.+...+.++..  +....+..   ...+.. ...+.      ....+..+++|+++++|+
T Consensus       202 ~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~--~~~~~g~~~~r~~~~~~g~~~g~~l~~~L~~~~~~~gv~i~~~~~v~  279 (571)
T 1y0p_A          202 NINDPALVKVLSSHSKDSVDWMTAMGADLTD--VGMMGGASVNRAHRPTGGAGVGAHVVQVLYDNAVKRNIDLRMNTRGI  279 (571)
T ss_dssp             TCSCHHHHHHHHHHHHHHHHHHHHTTCCCCE--EECCTTCSSCCEEESTTTCCHHHHHHHHHHHHHHHTTCEEESSEEEE
T ss_pred             CCCCHHHHHHHHHccHHHHHHHHhcCCCCcc--CcccCCcCCCeeEecCCCCCCHHHHHHHHHHHHHhcCCEEEeCCEee
Confidence                              1112223333321  11111211   011111 01111      122233689999999999


Q ss_pred             EEEecC-Ce---EEEEEccCCceeEEEeecEEEecCCCChHHHHHh
Q psy9141         122 NLDVNS-GN---VTFYRTEDNSETKITDNQLIIGADGAYSGVRKCL  163 (379)
Q Consensus       122 ~i~~~~-~~---v~v~~~~~G~~~~~i~adlVV~AdG~~S~vr~~l  163 (379)
                      ++..++ +.   +++... +|+..+ ++||.||.|+|.+|..++++
T Consensus       280 ~l~~~~~g~v~Gv~~~~~-~g~~~~-i~a~~VVlAtGg~~~n~~~~  323 (571)
T 1y0p_A          280 EVLKDDKGTVKGILVKGM-YKGYYW-VKADAVILATGGFAKNNERV  323 (571)
T ss_dssp             EEEECTTSCEEEEEEEET-TTEEEE-EECSEEEECCCCCTTCHHHH
T ss_pred             EeEEcCCCeEEEEEEEeC-CCcEEE-EECCeEEEeCCCcccCHHHH
Confidence            998876 54   344444 676555 99999999999999766554

>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A*

Probab=99.26  E-value=9.3e-12  Score=119.39  Aligned_cols=51  Identities=10%  Similarity=0.194  Sum_probs=42.5

Q ss_pred             cCCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEEEecCCCChH-HHHHh
Q psy9141         108 QYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAYSG-VRKCL  163 (379)
Q Consensus       108 ~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlVV~AdG~~S~-vr~~l  163 (379)
                      +..|++|+++++|++++.+++++.|++. +| +   ++||.||.|+|.+|. +.+.+
T Consensus       165 ~~~Gv~i~~~~~V~~i~~~~~~~~V~t~-~g-~---i~a~~VV~A~G~~s~~l~~~~  216 (381)
T 3nyc_A          165 RRNQGQVLCNHEALEIRRVDGAWEVRCD-AG-S---YRAAVLVNAAGAWCDAIAGLA  216 (381)
T ss_dssp             HHTTCEEESSCCCCEEEEETTEEEEECS-SE-E---EEESEEEECCGGGHHHHHHHH
T ss_pred             HHCCCEEEcCCEEEEEEEeCCeEEEEeC-CC-E---EEcCEEEECCChhHHHHHHHh
Confidence            3469999999999999998888888877 66 4   999999999999994 44443

>3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.70A {Bacillus halodurans}

Probab=99.26  E-value=1.9e-11  Score=124.02  Aligned_cols=55  Identities=11%  Similarity=0.119  Sum_probs=42.2

Q ss_pred             cCCCCeEEeCceEEEEEecCCeEE-EEEcc--CCceeEEEeecEEEecCCCCh-HHHHHh
Q psy9141         108 QYPDCNIYFQHKLINLDVNSGNVT-FYRTE--DNSETKITDNQLIIGADGAYS-GVRKCL  163 (379)
Q Consensus       108 ~~~gv~i~~~~~v~~i~~~~~~v~-v~~~~--~G~~~~~i~adlVV~AdG~~S-~vr~~l  163 (379)
                      ...|++|+++++|+++..+++++. +++.+  +|+..+ ++||.||.|+|.+| .+++.+
T Consensus       181 ~~~G~~i~~~~~V~~l~~~~g~v~gV~~~d~~tg~~~~-i~A~~VV~AaG~~s~~l~~~~  239 (561)
T 3da1_A          181 VARGAVALNYMKVESFIYDQGKVVGVVAKDRLTDTTHT-IYAKKVVNAAGPWVDTLREKD  239 (561)
T ss_dssp             HHTTCEEEESEEEEEEEEETTEEEEEEEEETTTCCEEE-EEEEEEEECCGGGHHHHHHTT
T ss_pred             HHcCCEEEcCCEEEEEEEcCCeEEEEEEEEcCCCceEE-EECCEEEECCCcchHHHHHhc
Confidence            346999999999999999887654 55441  354445 99999999999999 456554

>1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A*

Probab=99.26  E-value=3.9e-11  Score=121.19  Aligned_cols=157  Identities=16%  Similarity=0.183  Sum_probs=79.5

Q ss_pred             CCCC--CCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCH-HHH-----HHHHHC-C---
Q psy9141           1 MKCN--SKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSV-RGR-----EALRRI-G---   68 (379)
Q Consensus         1 M~~m--~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~-~~~-----~~l~~l-G---   68 (379)
                      |++|  .++||+|||||++||++|+.|++ |.+|+|+||.+.....+...+.++...+.+ .+.     +.++.- +   
T Consensus         1 M~~m~~~~~DVvVVG~G~AGl~aAl~la~-G~~V~vlEk~~~~~g~s~~a~Ggi~~~~~~~ds~~~~~~d~l~~g~g~~d   79 (540)
T 1chu_A            1 MNTLPEHSCDVLIIGSGAAGLSLALRLAD-QHQVIVLSKGPVTEGSTFYAQGGIAAVFDETDSIDSHVEDTLIAGAGICD   79 (540)
T ss_dssp             -CBCCSEECSEEEECCSHHHHHHHHHHTT-TSCEEEECSSCTTC-------------CCSHHHHHHHHHHHHHHTTTCCC
T ss_pred             CCCCCCCCCCEEEECccHHHHHHHHHHhc-CCcEEEEECCCCCCCChhhcCCCEEEecCCCCCHHHHHHHHHHhhcccCC
Confidence            5444  35899999999999999999999 999999999986543322222222111110 111     111110 0   


Q ss_pred             -------------ChHHHHhCCCCceeeE---------EEecCCcEE-E-eeCCCCCcH-------HHHhcCCCCeEEeC
Q psy9141          69 -------------LEDKLLAHGIPMRARM---------IHGQNGKLR-E-IPYDPVHNQ-------VELEQYPDCNIYFQ  117 (379)
Q Consensus        69 -------------l~~~l~~~~~~~~~~~---------~~~~~g~~~-~-~~~~~~~~~-------~~~~~~~gv~i~~~  117 (379)
                                   ..+.+...+.++....         .....+... + +......+.       ..+.+.++++|+++
T Consensus        80 ~~~v~~~~~~~~~~i~~l~~~Gv~f~~~~~~~~~g~~~~~~~gg~~~~r~~~~~d~~g~~l~~~L~~~~~~~~gv~i~~~  159 (540)
T 1chu_A           80 RHAVEFVASNARSCVQWLIDQGVLFDTHIQPNGEESYHLTREGGHSHRRILHAADATGREVETTLVSKALNHPNIRVLER  159 (540)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCC--------------------------------------CCCHHHHHHCTTEEEECS
T ss_pred             HHHHHHHHHhHHHHHHHHHHcCCCcccCcccCcCCccccccccccccCeEEEeCCCCHHHHHHHHHHHHHcCCCCEEEeC
Confidence                         0112222333322110         000001000 0 000000011       33444479999999


Q ss_pred             ceEEEEEe-cCC------eEE-EEEc--cCCceeEEEeecEEEecCCCChHH
Q psy9141         118 HKLINLDV-NSG------NVT-FYRT--EDNSETKITDNQLIIGADGAYSGV  159 (379)
Q Consensus       118 ~~v~~i~~-~~~------~v~-v~~~--~~G~~~~~i~adlVV~AdG~~S~v  159 (379)
                      +.|+++.. +++      .+. +...  .+|+..+ +.|+.||.|+|.+|.+
T Consensus       160 ~~v~~L~~~~~g~~~~~~~v~Gv~~~~~~~G~~~~-i~A~~VVlAtGg~~~~  210 (540)
T 1chu_A          160 TNAVDLIVSDKIGLPGTRRVVGAWVWNRNKETVET-CHAKAVVLATGGASKV  210 (540)
T ss_dssp             EEEEEEEEGGGTTCCSSCBEEEEEEEETTTTEEEE-EECSEEEECCCCCGGG
T ss_pred             cEEEEEEEcCCCCcccCCEEEEEEEEEcCCCcEEE-EEcCeEEECCCCcccc
Confidence            99999987 434      433 3332  2676555 9999999999999975

>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1

Probab=99.26  E-value=1.6e-11  Score=119.54  Aligned_cols=143  Identities=18%  Similarity=0.187  Sum_probs=84.0

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCC--CCCcc--cccccC---------HHHHHHHHHCCC-
Q psy9141           4 NSKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGL--SEGKS--INLALS---------VRGREALRRIGL-   69 (379)
Q Consensus         4 m~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~--~~g~~--i~~al~---------~~~~~~l~~lGl-   69 (379)
                      |+++||+||||||+|+++|+.|++.|.+|+|+|+.+.+.....  ..|+.  .+....         ......+..+.. 
T Consensus         2 M~~~dViIIGgG~aGl~aA~~la~~G~~V~vlEk~~~~g~~~~~sggg~cn~~~~~~~~~~~~~~~~~~~~~~l~~~~~~   81 (401)
T 2gqf_A            2 SQYSENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKIGRKILMSGGGFCNFTNLEVTPAHYLSQNPHFVKSALARYTNW   81 (401)
T ss_dssp             EEECSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHGGGGTCCCEESSCCGGGEECSCTTSTHHHHHHSCHH
T ss_pred             CCCCCEEEECCcHHHHHHHHHHHhCCCCEEEEeCCCCCchhcEEcCCCeEEccCCccCHHHhccCCHHHHHHHHHhCCHH
Confidence            4579999999999999999999999999999999875521000  00000  000000         001112222221 


Q ss_pred             --hHHHHhCCCCceeeEEEecCCcEEEeeCCCCCcH-----HHHhcCCCCeEEeCceEEEEEec----CCeEEEEEccCC
Q psy9141          70 --EDKLLAHGIPMRARMIHGQNGKLREIPYDPVHNQ-----VELEQYPDCNIYFQHKLINLDVN----SGNVTFYRTEDN  138 (379)
Q Consensus        70 --~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-----~~~~~~~gv~i~~~~~v~~i~~~----~~~v~v~~~~~G  138 (379)
                        .+.+...+.+...    ...+..  ++.. ....     ....+..|++++++++|+++..+    ++++.+++. +|
T Consensus        82 ~~~~~~~~~Gi~~~~----~~~g~~--~p~~-~~~~l~~~L~~~~~~~Gv~i~~~~~v~~i~~~~~g~~~~~~v~~~-~g  153 (401)
T 2gqf_A           82 DFISLVAEQGITYHE----KELGQL--FCDE-GAEQIVEMLKSECDKYGAKILLRSEVSQVERIQNDEKVRFVLQVN-ST  153 (401)
T ss_dssp             HHHHHHHHTTCCEEE----CSTTEE--EETT-CTHHHHHHHHHHHHHHTCEEECSCCEEEEEECCSCSSCCEEEEET-TE
T ss_pred             HHHHHHHhCCCceEE----CcCCEE--ccCC-CHHHHHHHHHHHHHHCCCEEEeCCEEEEEEcccCcCCCeEEEEEC-CC
Confidence              1112222332211    112222  2222 1111     22223368999999999999876    566888776 66


Q ss_pred             ceeEEEeecEEEecCCCChH
Q psy9141         139 SETKITDNQLIIGADGAYSG  158 (379)
Q Consensus       139 ~~~~~i~adlVV~AdG~~S~  158 (379)
                       +   ++||.||.|+|.+|.
T Consensus       154 -~---i~ad~VVlAtG~~s~  169 (401)
T 2gqf_A          154 -Q---WQCKNLIVATGGLSM  169 (401)
T ss_dssp             -E---EEESEEEECCCCSSC
T ss_pred             -E---EECCEEEECCCCccC
Confidence             4   999999999999994

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}

Probab=99.26  E-value=7.3e-12  Score=118.72  Aligned_cols=125  Identities=13%  Similarity=0.096  Sum_probs=79.1

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceee
Q psy9141           4 NSKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRAR   83 (379)
Q Consensus         4 m~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~   83 (379)
                      |+++||+|||||++|+++|..|++.|++|+|+|+.+.+...       .     ..         .|+.+... .+....
T Consensus         1 m~~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~gg~-------~-----~~---------~~~~~~~~-~~~~~~   58 (357)
T 4a9w_A            1 MDSVDVVVIGGGQSGLSAGYFLRRSGLSYVILDAEASPGGA-------W-----QH---------AWHSLHLF-SPAGWS   58 (357)
T ss_dssp             CEEEEEEEECCSHHHHHHHHHHHHSSCCEEEECCSSSSSGG-------G-----GG---------SCTTCBCS-SCGGGS
T ss_pred             CCcCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCc-------c-----cC---------CCCCcEec-Cchhhh
Confidence            34589999999999999999999999999999998755311       0     00         01000000 000000


Q ss_pred             EEEecCCcEE-EeeCCCCCcH------HHHhcCCCCeEEeCceEEEEEecCCeEE-EEEccCCceeEEEeecEEEecCCC
Q psy9141          84 MIHGQNGKLR-EIPYDPVHNQ------VELEQYPDCNIYFQHKLINLDVNSGNVT-FYRTEDNSETKITDNQLIIGADGA  155 (379)
Q Consensus        84 ~~~~~~g~~~-~~~~~~~~~~------~~~~~~~gv~i~~~~~v~~i~~~~~~v~-v~~~~~G~~~~~i~adlVV~AdG~  155 (379)
                         ...+... ..........      ....+..+++++++++|++++.+++.+. +++. +| +   +++|.||.|+|.
T Consensus        59 ---~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~v~~~-~g-~---~~~d~vV~AtG~  130 (357)
T 4a9w_A           59 ---SIPGWPMPASQGPYPARAEVLAYLAQYEQKYALPVLRPIRVQRVSHFGERLRVVARD-GR-Q---WLARAVISATGT  130 (357)
T ss_dssp             ---CCSSSCCCCCSSSSCBHHHHHHHHHHHHHHTTCCEECSCCEEEEEEETTEEEEEETT-SC-E---EEEEEEEECCCS
T ss_pred             ---hCCCCCCCCCccCCCCHHHHHHHHHHHHHHcCCEEEcCCEEEEEEECCCcEEEEEeC-CC-E---EEeCEEEECCCC
Confidence               0000000 0000011011      2333346899999999999999999988 8877 76 4   999999999999


Q ss_pred             ChH
Q psy9141         156 YSG  158 (379)
Q Consensus       156 ~S~  158 (379)
                      +|.
T Consensus       131 ~~~  133 (357)
T 4a9w_A          131 WGE  133 (357)
T ss_dssp             GGG
T ss_pred             CCC
Confidence            874

>2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7

Probab=99.25  E-value=3.6e-11  Score=108.10  Aligned_cols=129  Identities=17%  Similarity=0.198  Sum_probs=78.7

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceee
Q psy9141           4 NSKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRAR   83 (379)
Q Consensus         4 m~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~   83 (379)
                      |+++||+||||||+|+.+|+.|++.|.+|+|||+.......+ . ...+. .+..  ..++      .++.         
T Consensus         1 M~~~dVvVVGgG~aGl~aA~~la~~g~~v~lie~~~~~~G~~-~-~~~~~-~~~~--~~~~------~~~~---------   60 (232)
T 2cul_A            1 MAAYQVLIVGAGFSGAETAFWLAQKGVRVGLLTQSLDAVMMP-F-LPPKP-PFPP--GSLL------ERAY---------   60 (232)
T ss_dssp             -CCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCC-S-SCCCS-CCCT--TCHH------HHHC---------
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHCCCCEEEEecCCCcCCcc-c-Ccccc-ccch--hhHH------hhhc---------
Confidence            346899999999999999999999999999999984211110 0 00000 0000  0011      1110         


Q ss_pred             EEEecCCcEEEeeCCCCCcHHHHhcCCCCeEEeCceEEEEEecCCeE-EEEEccCCceeEEEeecEEEecCCCChHHHHH
Q psy9141          84 MIHGQNGKLREIPYDPVHNQVELEQYPDCNIYFQHKLINLDVNSGNV-TFYRTEDNSETKITDNQLIIGADGAYSGVRKC  162 (379)
Q Consensus        84 ~~~~~~g~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~v-~v~~~~~G~~~~~i~adlVV~AdG~~S~vr~~  162 (379)
                         +..+. ....+... -...+.+.++++++ +++|++++.+++++ .+.+. +|++   ++||+||.|+|.+|..+..
T Consensus        61 ---d~~g~-~~~~~~~~-l~~~~~~~~gv~i~-~~~v~~i~~~~~~v~~v~~~-~g~~---i~a~~VV~A~G~~s~~~~~  130 (232)
T 2cul_A           61 ---DPKDE-RVWAFHAR-AKYLLEGLRPLHLF-QATATGLLLEGNRVVGVRTW-EGPP---ARGEKVVLAVGSFLGARLF  130 (232)
T ss_dssp             ---CTTCC-CHHHHHHH-HHHHHHTCTTEEEE-ECCEEEEEEETTEEEEEEET-TSCC---EECSEEEECCTTCSSCEEE
T ss_pred             ---cCCCC-CHHHHHHH-HHHHHHcCCCcEEE-EeEEEEEEEeCCEEEEEEEC-CCCE---EECCEEEECCCCChhhcee
Confidence               01110 00000000 00233444589998 57999999887775 47777 8876   9999999999999977754

>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A*

Probab=99.25  E-value=5.4e-11  Score=114.52  Aligned_cols=46  Identities=11%  Similarity=0.259  Sum_probs=39.4

Q ss_pred             cCCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEEEecCCCChH
Q psy9141         108 QYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAYSG  158 (379)
Q Consensus       108 ~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlVV~AdG~~S~  158 (379)
                      +..|++++++++|++++.+++++.+++. +| +   ++||.||.|+|.+|.
T Consensus       161 ~~~Gv~i~~~~~v~~i~~~~~~~~v~~~-~g-~---~~a~~vV~A~G~~~~  206 (389)
T 2gf3_A          161 EARGAKVLTHTRVEDFDISPDSVKIETA-NG-S---YTADKLIVSMGAWNS  206 (389)
T ss_dssp             HHTTCEEECSCCEEEEEECSSCEEEEET-TE-E---EEEEEEEECCGGGHH
T ss_pred             HHCCCEEEcCcEEEEEEecCCeEEEEeC-CC-E---EEeCEEEEecCccHH
Confidence            3458999999999999988888888776 65 4   999999999999984

>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa}

Probab=99.24  E-value=1.8e-11  Score=115.83  Aligned_cols=142  Identities=13%  Similarity=0.208  Sum_probs=86.5

Q ss_pred             CCcEEEECCChHHHHHHHHHHhC--CCcEEEEccCCCCCCCCCCCCccc-ccccCHHHHHHHHHCCChHHHHhCCCCcee
Q psy9141           6 KKSVVIVGGGLVGSLSACMFAKN--QYEVNLYEAREDIRNSGLSEGKSI-NLALSVRGREALRRIGLEDKLLAHGIPMRA   82 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La~~--G~~V~viE~~~~~~~~~~~~g~~i-~~al~~~~~~~l~~lGl~~~l~~~~~~~~~   82 (379)
                      ++||+||||||+|+++|+.|+++  |++|+|||+.+.+.......+... ...+.+...++|+.+|+.-         ..
T Consensus        79 ~~DVvIVGgG~AGL~aA~~La~~~~G~~V~LiEk~~~~GGg~~~~g~~~~~~~~~~~~~~~L~~~Gv~~---------~~  149 (344)
T 3jsk_A           79 ETDIVIVGAGSCGLSAAYVLSTLRPDLRITIVEAGVAPGGGAWLGGQLFSAMVMRKPADVFLDEVGVPY---------ED  149 (344)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHHCTTSCEEEEESSSSCCTTTTCCBTTCCCEEEETTTHHHHHHHTCCC---------EE
T ss_pred             cCCEEEECccHHHHHHHHHHHhcCCCCEEEEEeCCCccCCccccCCccchhhhcchHHHHHHHHcCCcc---------cc
Confidence            58999999999999999999997  999999999976542111111100 0112345567777776521         10


Q ss_pred             eEEEecCCcEEEeeCCCCCcH---HHHhcCCCCeEEeCceEEEEEecCC-------------------eE---EEEE---
Q psy9141          83 RMIHGQNGKLREIPYDPVHNQ---VELEQYPDCNIYFQHKLINLDVNSG-------------------NV---TFYR---  134 (379)
Q Consensus        83 ~~~~~~~g~~~~~~~~~~~~~---~~~~~~~gv~i~~~~~v~~i~~~~~-------------------~v---~v~~---  134 (379)
                            .+............+   ..+.+.+++++++++.++++..+++                   .+   .+..   
T Consensus       150 ------~G~~~~~~~~~d~~~~L~~~a~~~~gV~i~~~~~V~dLi~~~d~~~~~~~~~~g~~~~~g~~rV~GVv~~~~~v  223 (344)
T 3jsk_A          150 ------EGDYVVVKHAALFTSTVLSKVLQRPNVKLFNATTVEDLITRKHHAESSSSSDDGEAEDEAKVRIAGVVTNWTLV  223 (344)
T ss_dssp             ------CSSEEEESCHHHHHHHHHHHHHTCTTEEEEETEEEEEEEEEEC----------------CCEEEEEEEEEEHHH
T ss_pred             ------cCCeEEEecHHHHHHHHHHHHHhCCCCEEEeCCEEEEEEecCCcccccccccccccccCCCceEeEEEeeeeee
Confidence                  011111110000001   3344457999999999999877652                   22   2211   


Q ss_pred             ccCC------ceeEEEeecEEEecCCCChHHHHHh
Q psy9141         135 TEDN------SETKITDNQLIIGADGAYSGVRKCL  163 (379)
Q Consensus       135 ~~~G------~~~~~i~adlVV~AdG~~S~vr~~l  163 (379)
                      ..+|      +..+ ++|++||+|||..|.+++.+
T Consensus       224 ~~~g~~~~~~d~~~-i~Ak~VV~ATG~~s~v~~~~  257 (344)
T 3jsk_A          224 SMHHDDQSAMDPNT-INAPVIISTTGHDGPFGAFS  257 (344)
T ss_dssp             HTTSSSSSCCBCEE-EECSEEEECCCSSSSSSCHH
T ss_pred             eccCCcccccCceE-EEcCEEEECCCCCchhhHHH
Confidence            0122      2235 99999999999999865554

>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli}

Probab=99.24  E-value=6.8e-11  Score=113.20  Aligned_cols=46  Identities=15%  Similarity=0.264  Sum_probs=39.5

Q ss_pred             cCCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEEEecCCCChH
Q psy9141         108 QYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAYSG  158 (379)
Q Consensus       108 ~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlVV~AdG~~S~  158 (379)
                      +..|++++++++|++++.+++++.+++. +|+    ++||.||.|+|.+|.
T Consensus       160 ~~~G~~i~~~~~V~~i~~~~~~~~v~~~-~g~----~~a~~vV~a~G~~s~  205 (372)
T 2uzz_A          160 KEAGCAQLFNCPVTAIRHDDDGVTIETA-DGE----YQAKKAIVCAGTWVK  205 (372)
T ss_dssp             HHTTCEEECSCCEEEEEECSSSEEEEES-SCE----EEEEEEEECCGGGGG
T ss_pred             HHCCCEEEcCCEEEEEEEcCCEEEEEEC-CCe----EEcCEEEEcCCccHH
Confidence            3468999999999999988888888877 663    899999999999983

>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*

Probab=99.24  E-value=2.3e-11  Score=116.98  Aligned_cols=50  Identities=14%  Similarity=0.246  Sum_probs=41.9

Q ss_pred             CCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEEEecCCCChH-HHHHh
Q psy9141         109 YPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAYSG-VRKCL  163 (379)
Q Consensus       109 ~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlVV~AdG~~S~-vr~~l  163 (379)
                      ..|++++++++|++++.+++++.+++. +| +   ++||.||.|+|.+|. +.+.+
T Consensus       176 ~~g~~i~~~~~v~~i~~~~~~~~v~~~-~g-~---~~a~~vV~A~G~~s~~l~~~~  226 (382)
T 1ryi_A          176 MLGAEIFEHTPVLHVERDGEALFIKTP-SG-D---VWANHVVVASGVWSGMFFKQL  226 (382)
T ss_dssp             HTTCEEETTCCCCEEECSSSSEEEEET-TE-E---EEEEEEEECCGGGTHHHHHHT
T ss_pred             HCCCEEEcCCcEEEEEEECCEEEEEcC-Cc-e---EEcCEEEECCChhHHHHHHhc
Confidence            358999999999999988888877776 66 4   999999999999986 55544

>2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A*

Probab=99.22  E-value=8.8e-11  Score=117.60  Aligned_cols=54  Identities=6%  Similarity=0.021  Sum_probs=41.9

Q ss_pred             cCCCCeEEeCceEEEEEecCCeEEEEEc--cCCceeEEEeecEEEecCCCChH-HHHH
Q psy9141         108 QYPDCNIYFQHKLINLDVNSGNVTFYRT--EDNSETKITDNQLIIGADGAYSG-VRKC  162 (379)
Q Consensus       108 ~~~gv~i~~~~~v~~i~~~~~~v~v~~~--~~G~~~~~i~adlVV~AdG~~S~-vr~~  162 (379)
                      ...|++++++++|++++.+++.+.+++.  .+|++.+ ++||.||.|+|.+|. +++.
T Consensus       160 ~~~Gv~i~~~~~V~~l~~~~~~~~V~~~d~~~G~~~~-i~A~~VV~AtG~~s~~l~~~  216 (501)
T 2qcu_A          160 VRKGGEVLTRTRATSARRENGLWIVEAEDIDTGKKYS-WQARGLVNATGPWVKQFFDD  216 (501)
T ss_dssp             HHTTCEEECSEEEEEEEEETTEEEEEEEETTTCCEEE-EEESCEEECCGGGHHHHHHH
T ss_pred             HHcCCEEEcCcEEEEEEEeCCEEEEEEEECCCCCEEE-EECCEEEECCChhHHHHHHH
Confidence            3468999999999999988776666663  1576445 999999999999995 4443

>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B*

Probab=99.21  E-value=2.5e-11  Score=117.57  Aligned_cols=50  Identities=8%  Similarity=-0.043  Sum_probs=41.1

Q ss_pred             CCCCeEEeCceEEEEEecCCe-EEEEEccCCceeEEEeecEEEecCCCCh-HHHHHh
Q psy9141         109 YPDCNIYFQHKLINLDVNSGN-VTFYRTEDNSETKITDNQLIIGADGAYS-GVRKCL  163 (379)
Q Consensus       109 ~~gv~i~~~~~v~~i~~~~~~-v~v~~~~~G~~~~~i~adlVV~AdG~~S-~vr~~l  163 (379)
                      ..|++++++++|++++.++++ +.+++. +| +   ++||.||.|+|.+| .+++.+
T Consensus       186 ~~g~~i~~~~~v~~i~~~~~~~~~v~~~-~g-~---~~a~~vV~a~G~~s~~l~~~~  237 (405)
T 2gag_B          186 EMGVDIIQNCEVTGFIKDGEKVTGVKTT-RG-T---IHAGKVALAGAGHSSVLAEMA  237 (405)
T ss_dssp             HTTCEEECSCCEEEEEESSSBEEEEEET-TC-C---EEEEEEEECCGGGHHHHHHHH
T ss_pred             HCCCEEEcCCeEEEEEEeCCEEEEEEeC-Cc-e---EECCEEEECCchhHHHHHHHc
Confidence            368999999999999987765 457776 77 4   99999999999998 566654

>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1}

Probab=99.18  E-value=2.1e-11  Score=118.70  Aligned_cols=51  Identities=16%  Similarity=0.163  Sum_probs=36.1

Q ss_pred             cCCCCeEEeCceEE---------EEEecCCeEEEEEccCCceeEEEeecEEEecCCCCh-HHHH-Hh
Q psy9141         108 QYPDCNIYFQHKLI---------NLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAYS-GVRK-CL  163 (379)
Q Consensus       108 ~~~gv~i~~~~~v~---------~i~~~~~~v~v~~~~~G~~~~~i~adlVV~AdG~~S-~vr~-~l  163 (379)
                      +..|++++++++|+         +++.+++++.+++. +| +   ++||.||.|+|.+| .+++ .+
T Consensus       183 ~~~Gv~i~~~~~v~~~~g~~~~~~i~~~~~~v~v~~~-~g-~---i~a~~VV~A~G~~s~~l~~~~~  244 (405)
T 3c4n_A          183 IGQGAGLLLNTRAELVPGGVRLHRLTVTNTHQIVVHE-TR-Q---IRAGVIIVAAGAAGPALVEQGL  244 (405)
T ss_dssp             HTTTCEEECSCEEEEETTEEEEECBCC-------CBC-CE-E---EEEEEEEECCGGGHHHHHHHHH
T ss_pred             HHCCCEEEcCCEEEeccccccccceEeeCCeEEEEEC-Cc-E---EECCEEEECCCccHHHHHHHhc
Confidence            44699999999999         88877777766655 55 4   99999999999999 5766 54

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*

Probab=99.18  E-value=9.4e-11  Score=115.62  Aligned_cols=155  Identities=15%  Similarity=0.132  Sum_probs=80.3

Q ss_pred             CCCCCCCcEEEECCChHHHHHHHHHHhCCC--cEEEEccCCCCCCCCCCCCcccc-cccCHHHHHHHHHCCChHH--HHh
Q psy9141           1 MKCNSKKSVVIVGGGLVGSLSACMFAKNQY--EVNLYEAREDIRNSGLSEGKSIN-LALSVRGREALRRIGLEDK--LLA   75 (379)
Q Consensus         1 M~~m~~~dVvIVGaGpaGl~~A~~La~~G~--~V~viE~~~~~~~~~~~~g~~i~-~al~~~~~~~l~~lGl~~~--l~~   75 (379)
                      |+++..+||+||||||+|+++|..|++.|.  +|+|||+.+.........+.... +.+.... ..+..-.++..  +..
T Consensus         1 M~~~~~~dV~IIGaG~aGl~aA~~L~~~G~~~~V~v~E~~~~~GG~~~~~~~~~~~~~ip~~~-~~~~~~~~~~g~~~~~   79 (447)
T 2gv8_A            1 MCLPTIRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGVWNYTSTLSNKLPVPSTN-PILTTEPIVGPAALPV   79 (447)
T ss_dssp             --CCSCCEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSSSSTTCSCCSCCCSCCCSSBCC-TTCCCCCBCCSSSCCB
T ss_pred             CCCCCCCEEEEECccHHHHHHHHHHHhcCCCCCeEEEecCCCCCCeecCCCCCCccccccccc-ccccccccccccccCC
Confidence            555567899999999999999999999999  99999998755422111111000 0000000 00000000000  000


Q ss_pred             CCCCceeeEEEecCCcE---EEeeCC----CCCcH-------HHHhcCCCCeEEeCceEEEEEecCCeEEEEEccC---C
Q psy9141          76 HGIPMRARMIHGQNGKL---REIPYD----PVHNQ-------VELEQYPDCNIYFQHKLINLDVNSGNVTFYRTED---N  138 (379)
Q Consensus        76 ~~~~~~~~~~~~~~g~~---~~~~~~----~~~~~-------~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~---G  138 (379)
                      ....+......+.....   ..+++.    .....       ....+..+..++++++|++++.+++.++|++. +   |
T Consensus        80 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~i~~~t~V~~v~~~~~~~~V~~~-~~~~G  158 (447)
T 2gv8_A           80 YPSPLYRDLQTNTPIELMGYCDQSFKPQTLQFPHRHTIQEYQRIYAQPLLPFIKLATDVLDIEKKDGSWVVTYK-GTKAG  158 (447)
T ss_dssp             CCCCCCTTCBCSSCHHHHSCTTCCCCTTCCSSCBHHHHHHHHHHHHGGGGGGEECSEEEEEEEEETTEEEEEEE-ESSTT
T ss_pred             ccCchhhhhccCCCHHHhccCCCCCCCCCCCCCCHHHHHHHHHHHHHHhhCeEEeCCEEEEEEeCCCeEEEEEe-ecCCC
Confidence            00000000000000000   000000    00011       12222236789999999999988888888876 5   7


Q ss_pred             c-eeEEEeecEEEecCCCChH
Q psy9141         139 S-ETKITDNQLIIGADGAYSG  158 (379)
Q Consensus       139 ~-~~~~i~adlVV~AdG~~S~  158 (379)
                      + ..+ +++|.||.|+|.+|.
T Consensus       159 ~~~~~-~~~d~VVvAtG~~s~  178 (447)
T 2gv8_A          159 SPISK-DIFDAVSICNGHYEV  178 (447)
T ss_dssp             CCEEE-EEESEEEECCCSSSS
T ss_pred             CeeEE-EEeCEEEECCCCCCC
Confidence            6 234 899999999999874

>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis}

Probab=99.17  E-value=1.1e-10  Score=116.36  Aligned_cols=52  Identities=10%  Similarity=0.119  Sum_probs=38.6

Q ss_pred             cCCCCeEEeCceEEEEEecCCeEE-EEEccCCceeEEEeecEEEecCCCChHHHHHh
Q psy9141         108 QYPDCNIYFQHKLINLDVNSGNVT-FYRTEDNSETKITDNQLIIGADGAYSGVRKCL  163 (379)
Q Consensus       108 ~~~gv~i~~~~~v~~i~~~~~~v~-v~~~~~G~~~~~i~adlVV~AdG~~S~vr~~l  163 (379)
                      +..|++|+++++|++|+.++++++ |+++ ||++   ++||.||.+.+.....++.+
T Consensus       232 ~~~Gg~I~~~~~V~~I~~~~~~~~gV~~~-~g~~---~~ad~VV~~a~~~~~~~~Ll  284 (501)
T 4dgk_A          232 QDLGGEVVLNARVSHMETTGNKIEAVHLE-DGRR---FLTQAVASNADVVHTYRDLL  284 (501)
T ss_dssp             HHTTCEEECSCCEEEEEEETTEEEEEEET-TSCE---EECSCEEECCC---------
T ss_pred             HHhCCceeeecceeEEEeeCCeEEEEEec-CCcE---EEcCEEEECCCHHHHHHHhc
Confidence            346899999999999999999887 7888 9998   99999999888887776655

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=99.17  E-value=3.8e-11  Score=113.32  Aligned_cols=124  Identities=15%  Similarity=0.153  Sum_probs=79.5

Q ss_pred             CCCCCCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCc
Q psy9141           1 MKCNSKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPM   80 (379)
Q Consensus         1 M~~m~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~   80 (379)
                      |+ |+++||+||||||+|+++|+.|++.|++|+|||+.+...      |. .                  ...    .+.
T Consensus         1 m~-~~~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~g------g~-~------------------~~~----~~~   50 (335)
T 2zbw_A            1 MA-ADHTDVLIVGAGPTGLFAGFYVGMRGLSFRFVDPLPEPG------GQ-L------------------TAL----YPE   50 (335)
T ss_dssp             ---CCEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSC------HH-H------------------HHT----CTT
T ss_pred             CC-CCcCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCC------Ce-e------------------ecc----CCC
Confidence            44 456899999999999999999999999999999986442      11 0                  000    000


Q ss_pred             eeeEEEecCCcEEEeeCCCCCcH-HHHhcCCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEEEecCCCChHH
Q psy9141          81 RARMIHGQNGKLREIPYDPVHNQ-VELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAYSGV  159 (379)
Q Consensus        81 ~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlVV~AdG~~S~v  159 (379)
                      .  .+++..+. ........... ....+..+++++++++|++++.+++.+++.+. +|++   +++|.||.|+|.+|..
T Consensus        51 ~--~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~v~~~-~g~~---~~~~~lv~AtG~~~~~  123 (335)
T 2zbw_A           51 K--YIYDVAGF-PKVYAKDLVKGLVEQVAPFNPVYSLGERAETLEREGDLFKVTTS-QGNA---YTAKAVIIAAGVGAFE  123 (335)
T ss_dssp             S--EECCSTTC-SSEEHHHHHHHHHHHHGGGCCEEEESCCEEEEEEETTEEEEEET-TSCE---EEEEEEEECCTTSEEE
T ss_pred             c--eeeccCCC-CCCCHHHHHHHHHHHHHHcCCEEEeCCEEEEEEECCCEEEEEEC-CCCE---EEeCEEEECCCCCCCC
Confidence            0  01110000 00000000000 12223347899999999999988878888887 8876   9999999999998754


Q ss_pred             HH
Q psy9141         160 RK  161 (379)
Q Consensus       160 r~  161 (379)
                      ++
T Consensus       124 p~  125 (335)
T 2zbw_A          124 PR  125 (335)
T ss_dssp             EC
T ss_pred             CC
Confidence            43

>3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A

Probab=99.17  E-value=5.8e-11  Score=120.97  Aligned_cols=146  Identities=22%  Similarity=0.259  Sum_probs=84.9

Q ss_pred             CCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCC-CCCCCCCCCcccccccC-HHHHHHHHHCC-ChHHHHhC-CCCc
Q psy9141           5 SKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEARED-IRNSGLSEGKSINLALS-VRGREALRRIG-LEDKLLAH-GIPM   80 (379)
Q Consensus         5 ~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~-~~~~~~~~g~~i~~al~-~~~~~~l~~lG-l~~~l~~~-~~~~   80 (379)
                      .++||+|||||++|+++|+.|++.|.+|+|||+.+. ....+  +...+. .+. ....+.++.+| ........ +.. 
T Consensus        27 ~~yDVIVIGgG~AGl~AAlaLAr~G~kVlLIEk~~~~iG~~~--Cnps~g-gia~~~lv~ei~algg~~~~~~d~~gi~-  102 (651)
T 3ces_A           27 DPFDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQMS--CNPAIG-GIGKGHLVKEVDALGGLMAKAIDQAGIQ-  102 (651)
T ss_dssp             SCEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCS--SSSEEE-STTHHHHHHHHHHTTCSHHHHHHHHEEE-
T ss_pred             CcCCEEEECChHHHHHHHHHHHhCCCCEEEEeeccccccccc--cccccc-chhhHHHHHHHHHhccHHHHHhhhcccc-
Confidence            468999999999999999999999999999999842 22111  111110 111 22334455554 22222111 111 


Q ss_pred             eeeEEEec-CCcE-E--EeeCCCC-CcH---HHHhcCCCCeEEeCceEEEEEecCCeE-EEEEccCCceeEEEeecEEEe
Q psy9141          81 RARMIHGQ-NGKL-R--EIPYDPV-HNQ---VELEQYPDCNIYFQHKLINLDVNSGNV-TFYRTEDNSETKITDNQLIIG  151 (379)
Q Consensus        81 ~~~~~~~~-~g~~-~--~~~~~~~-~~~---~~~~~~~gv~i~~~~~v~~i~~~~~~v-~v~~~~~G~~~~~i~adlVV~  151 (379)
                        +...+. .+.. .  ....+.. ..+   ..+.+.+|+++ ++++|+++..+++.+ .|.+. +|.+   ++||.||.
T Consensus       103 --f~~l~~~kgpav~~~r~~~Dr~~~~~~L~e~Le~~~GV~I-~~~~V~~L~~e~g~V~GV~t~-dG~~---I~Ad~VVL  175 (651)
T 3ces_A          103 --FRILNASKGPAVRATRAQADRVLYRQAVRTALENQPNLMI-FQQAVEDLIVENDRVVGAVTQ-MGLK---FRAKAVVL  175 (651)
T ss_dssp             --EEEESTTSCGGGCEEEEEECHHHHHHHHHHHHHTCTTEEE-EECCEEEEEESSSBEEEEEET-TSEE---EEEEEEEE
T ss_pred             --hhhhhcccCcccccchhhCCHHHHHHHHHHHHHhCCCCEE-EEEEEEEEEecCCEEEEEEEC-CCCE---EECCEEEE
Confidence              111111 1110 0  0001100 001   23333379999 567999998877765 47777 8866   99999999


Q ss_pred             cCCCChHHHH
Q psy9141         152 ADGAYSGVRK  161 (379)
Q Consensus       152 AdG~~S~vr~  161 (379)
                      |+|.+|..+.
T Consensus       176 ATGt~s~~~~  185 (651)
T 3ces_A          176 TVGTFLDGKI  185 (651)
T ss_dssp             CCSTTTCCEE
T ss_pred             cCCCCccCcc
Confidence            9999986543

>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*

Probab=99.16  E-value=1.8e-10  Score=98.98  Aligned_cols=110  Identities=13%  Similarity=0.149  Sum_probs=77.4

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeEEE
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARMIH   86 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~   86 (379)
                      +||+|||||++|+.+|..|++.|.+|+|+|+.+.....    ...    +..                   .+       
T Consensus         2 ~~vvIIGgG~~Gl~~A~~l~~~g~~v~lie~~~~~~~~----~~~----~~~-------------------~~-------   47 (180)
T 2ywl_A            2 WDVIVVGGGPSGLSAALFLARAGLKVLVLDGGRSKVKG----VSR----VPN-------------------YP-------   47 (180)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEECSCCTTTT----CSC----CCC-------------------ST-------
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCcccC----chh----hhc-------------------cC-------
Confidence            59999999999999999999999999999998622110    000    000                   00       


Q ss_pred             ecCCcEEEeeCCCCCcH-----HHHhcCCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEEEecCCCChHHHH
Q psy9141          87 GQNGKLREIPYDPVHNQ-----VELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAYSGVRK  161 (379)
Q Consensus        87 ~~~g~~~~~~~~~~~~~-----~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlVV~AdG~~S~vr~  161 (379)
                         +    ++.......     ....+..+++++++ +|++++.+++++.+++. +| +   +++|+||.|+|.+|.+++
T Consensus        48 ---~----~~~~~~~~~~~~~l~~~~~~~gv~v~~~-~v~~i~~~~~~~~v~~~-~g-~---i~ad~vI~A~G~~~~~~~  114 (180)
T 2ywl_A           48 ---G----LLDEPSGEELLRRLEAHARRYGAEVRPG-VVKGVRDMGGVFEVETE-EG-V---EKAERLLLCTHKDPTLPS  114 (180)
T ss_dssp             ---T----CTTCCCHHHHHHHHHHHHHHTTCEEEEC-CCCEEEECSSSEEEECS-SC-E---EEEEEEEECCTTCCHHHH
T ss_pred             ---C----CcCCCCHHHHHHHHHHHHHHcCCEEEeC-EEEEEEEcCCEEEEEEC-CC-E---EEECEEEECCCCCCCccc
Confidence               0    000000000     22223358999999 99999988878888887 77 5   999999999999998766


Q ss_pred             Hh
Q psy9141         162 CL  163 (379)
Q Consensus       162 ~l  163 (379)
                      .+
T Consensus       115 ~~  116 (180)
T 2ywl_A          115 LL  116 (180)
T ss_dssp             HH
T ss_pred             cC
Confidence            55

>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A*

Probab=99.14  E-value=5.3e-10  Score=113.73  Aligned_cols=154  Identities=16%  Similarity=0.100  Sum_probs=87.1

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccC----------------------------
Q psy9141           6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALS----------------------------   57 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~----------------------------   57 (379)
                      .+||+|||+|++|+++|+.|++.|.+|+|+|+.+.........+.++....+                            
T Consensus       126 ~~~v~viG~G~aG~~aa~~~~~~g~~v~~~e~~~~~~~~~~~a~gg~~~~~~~~~~~~g~~ds~~~~~~~~~~~g~~~~~  205 (572)
T 1d4d_A          126 TTDVVIIGSGGAGLAAAVSARDAGAKVILLEKEPIPGGNTKLAAGGMNAAETKPQAKLGIEDKKQIMIDDTMKGGRNIND  205 (572)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHSSSCCEEEECSSSSSCTTGGGCCSCEECCSSSTTGGGTCCCCTHHHHHHHHHHTTTCSC
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCcchhhhCCeeEccCCHHHHHhCCCCCHHHHHHHHHHhcCCCCC
Confidence            5799999999999999999999999999999998665332222222211000                            


Q ss_pred             HHHHHHHHHCC--ChHHHHhCCCCceeeEEEecCCcE---EEeeCCC-CCcH------HHHhcCCCCeEEeCceEEEEEe
Q psy9141          58 VRGREALRRIG--LEDKLLAHGIPMRARMIHGQNGKL---REIPYDP-VHNQ------VELEQYPDCNIYFQHKLINLDV  125 (379)
Q Consensus        58 ~~~~~~l~~lG--l~~~l~~~~~~~~~~~~~~~~g~~---~~~~~~~-~~~~------~~~~~~~gv~i~~~~~v~~i~~  125 (379)
                      +...+.+..-.  ..+.+...+.++...  ....+..   ...+... ..+.      ....+..|++|+++++|+++..
T Consensus       206 ~~~v~~~~~~~~~~i~~l~~~Gv~~~~~--~~~gg~~~~r~~~~~~~~~~g~~l~~~L~~~~~~~gv~i~~~t~v~~l~~  283 (572)
T 1d4d_A          206 PELVKVLANNSSDSIDWLTSMGADMTDV--GRMGGASVNRSHRPTGGAGVGAHVAQVLWDNAVKRGTDIRLNSRVVRILE  283 (572)
T ss_dssp             HHHHHHHHHTHHHHHHHHHHHTCCCCEE--ECCTTCSSCCEEESTTTCCHHHHHHHHHHHHHHHTTCEEESSEEEEEEEE
T ss_pred             HHHHHHHHHccHHHHHHHHhcCCccccc--cccCCCcCCeeEecCCCCCCHHHHHHHHHHHHHHcCCeEEecCEEEEEEE
Confidence            00011110000  011222223333211  1111211   1111111 1111      1222335999999999999987


Q ss_pred             cC-Ce---EEEEEccCCceeEEEeecEEEecCCCChHHHHHh
Q psy9141         126 NS-GN---VTFYRTEDNSETKITDNQLIIGADGAYSGVRKCL  163 (379)
Q Consensus       126 ~~-~~---v~v~~~~~G~~~~~i~adlVV~AdG~~S~vr~~l  163 (379)
                      ++ +.   +.+... +|+..+ +.||.||.|+|.+|..++++
T Consensus       284 ~~~g~v~GV~~~~~-~G~~~~-i~A~~VVlAtGg~~~~~~~~  323 (572)
T 1d4d_A          284 DASGKVTGVLVKGE-YTGYYV-IKADAVVIAAGGFAKNNERV  323 (572)
T ss_dssp             C--CCEEEEEEEET-TTEEEE-EECSEEEECCCCCTTCHHHH
T ss_pred             CCCCeEEEEEEEeC-CCcEEE-EEcCEEEEeCCCCccCHHHH
Confidence            66 54   344444 676556 99999999999999876655

>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis}

Probab=99.14  E-value=1.4e-10  Score=114.50  Aligned_cols=45  Identities=11%  Similarity=0.116  Sum_probs=39.9

Q ss_pred             CeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEEEecCCCChHHH
Q psy9141         112 CNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAYSGVR  160 (379)
Q Consensus       112 v~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlVV~AdG~~S~vr  160 (379)
                      ++|+++++|++|+.++++++|++. +|++   ++||.||.|.......+
T Consensus       248 ~~i~~~~~V~~i~~~~~~~~v~~~-~g~~---~~ad~vi~a~p~~~~~~  292 (470)
T 3i6d_A          248 TKVYKGTKVTKLSHSGSCYSLELD-NGVT---LDADSVIVTAPHKAAAG  292 (470)
T ss_dssp             EEEECSCCEEEEEECSSSEEEEES-SSCE---EEESEEEECSCHHHHHH
T ss_pred             CEEEeCCceEEEEEcCCeEEEEEC-CCCE---EECCEEEECCCHHHHHH
Confidence            689999999999999889999998 8987   99999999998877443

>1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A*

Probab=99.13  E-value=2.4e-10  Score=116.91  Aligned_cols=156  Identities=15%  Similarity=0.166  Sum_probs=85.2

Q ss_pred             CCCcEEEECCChHHHHHHHHHHhCC--CcEEEEccCCCCCCCCCCCCcccccccCH-HH-----HHHHHHC-C-------
Q psy9141           5 SKKSVVIVGGGLVGSLSACMFAKNQ--YEVNLYEAREDIRNSGLSEGKSINLALSV-RG-----REALRRI-G-------   68 (379)
Q Consensus         5 ~~~dVvIVGaGpaGl~~A~~La~~G--~~V~viE~~~~~~~~~~~~g~~i~~al~~-~~-----~~~l~~l-G-------   68 (379)
                      .++||+|||||++||++|+.|++.|  .+|+||||.+.....+.....++...+.. .+     ...++.- +       
T Consensus         4 ~~~DVvIVG~G~AGl~aAl~la~~G~~~~V~vlEk~~~~~~~s~~a~GGi~~~~~~~ds~~~~~~d~~~~g~~~~d~~~v   83 (602)
T 1kf6_A            4 FQADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYPMRSHTVAAEGGSAAVAQDHDSFEYHFHDTVAGGDWLCEQDVV   83 (602)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHHCTTCCEEEEESSCGGGSGGGGCCSCEECCCSTTCCHHHHHHHHHHHTTTCSCHHHH
T ss_pred             ccCCEEEECCCHHHHHHHHHHHhcCCCCcEEEEeCCCCCCChHHHhcCccEEeCCCCCCHHHHHHHHHHhcCCCCCHHHH
Confidence            3589999999999999999999999  99999999865432211111122111110 00     1111110 0       


Q ss_pred             ---------ChHHHHhCCCCceee---EE--EecCCcE-EEeeCCC-CCcH-------HHHhcCCCCeEEeCceEEEEEe
Q psy9141          69 ---------LEDKLLAHGIPMRAR---MI--HGQNGKL-REIPYDP-VHNQ-------VELEQYPDCNIYFQHKLINLDV  125 (379)
Q Consensus        69 ---------l~~~l~~~~~~~~~~---~~--~~~~g~~-~~~~~~~-~~~~-------~~~~~~~gv~i~~~~~v~~i~~  125 (379)
                               ..+.+...+.++...   .+  ....+.. .+..+.. ..+.       ..+.+..+++|++++.|+++..
T Consensus        84 ~~~~~~~~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~d~tg~~l~~~L~~~~~~~gnv~i~~~~~v~~l~~  163 (602)
T 1kf6_A           84 DYFVHHCPTEMTQLELWGCPWSRRPDGSVNVRRFGGMKIERTWFAADKTGFHMLHTLFQTSLQFPQIQRFDEHFVLDILV  163 (602)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCCCBCTTSSBCCBCCTTCSSCCEECSTTCHHHHHHHHHHHHHTTCTTEEEEETEEEEEEEE
T ss_pred             HHHHHHHHHHHHHHHHcCCCcccCCCCcccccccCCccCCeEEEcCCCCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEE
Confidence                     011222233332210   00  0000100 0000110 0011       2233333499999999999988


Q ss_pred             cCCeE---EEEE-ccCCceeEEEeecEEEecCCCChHHHHH
Q psy9141         126 NSGNV---TFYR-TEDNSETKITDNQLIIGADGAYSGVRKC  162 (379)
Q Consensus       126 ~~~~v---~v~~-~~~G~~~~~i~adlVV~AdG~~S~vr~~  162 (379)
                      +++.+   .+.. . +|+..+ +.|+.||.|+|.+|.++..
T Consensus       164 ~~g~v~Gv~~~~~~-~G~~~~-i~A~~VVlAtGg~s~~~~~  202 (602)
T 1kf6_A          164 DDGHVRGLVAMNMM-EGTLVQ-IRANAVVMATGGAGRVYRY  202 (602)
T ss_dssp             ETTEEEEEEEEETT-TTEEEE-EECSCEEECCCCCGGGSSS
T ss_pred             eCCEEEEEEEEEcC-CCcEEE-EEcCeEEECCCCCcccccC
Confidence            77743   3332 4 787555 9999999999999988644

>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A*

Probab=99.13  E-value=2.6e-10  Score=114.46  Aligned_cols=38  Identities=21%  Similarity=0.281  Sum_probs=35.2

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCC
Q psy9141           6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRN   43 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~   43 (379)
                      ++||+|||||++||++|+.|++.|.+|+||||.+....
T Consensus        41 ~~DVvVVGaG~AGl~AA~~aa~~G~~V~vlEk~~~~GG   78 (510)
T 4at0_A           41 EADVVVAGYGIAGVAASIEAARAGADVLVLERTSGWGG   78 (510)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCT
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCC
Confidence            47999999999999999999999999999999987653

>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens}

Probab=99.13  E-value=1.8e-10  Score=109.31  Aligned_cols=140  Identities=14%  Similarity=0.271  Sum_probs=79.4

Q ss_pred             CcEEEECCChHHHHHHHHHHh---CCCcEEEEccCCCCCCCCC------CCCcccc-----cccCH----HHHHHHHH--
Q psy9141           7 KSVVIVGGGLVGSLSACMFAK---NQYEVNLYEAREDIRNSGL------SEGKSIN-----LALSV----RGREALRR--   66 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~---~G~~V~viE~~~~~~~~~~------~~g~~i~-----~al~~----~~~~~l~~--   66 (379)
                      +||+|||||++|+++|+.|++   .|++|+|+||.+.......      ..+....     +...+    ...+.++.  
T Consensus         2 ~dV~IIGaG~aGl~~A~~L~~~~~~G~~V~v~Ek~~~~gg~~~~~~~~~~~~~~~d~g~~~~~~~~~~~~~~~~~~~~~~   81 (342)
T 3qj4_A            2 AQVLIVGAGMTGSLCAALLRRQTSGPLYLAVWDKADDSGGRMTTACSPHNPQCTADLGAQYITCTPHYAKKHQRFYDELL   81 (342)
T ss_dssp             EEEEEECCSHHHHHHHHHHHSCC-CCEEEEEECSSSSSCGGGCEEECSSCTTCEEESSCCCEEECSSHHHHTHHHHHHHH
T ss_pred             CcEEEECCcHHHHHHHHHHHhhccCCceEEEEECCCCCccceeeeecCCCCCceEecCCceEEcCchHHHHHHHHHHHHH
Confidence            389999999999999999999   9999999999875432100      0000000     00011    11112211  


Q ss_pred             -CCChHHHHhCCCCceeeEEEecCCcEEEeeCCCCCcH--HHHhcCCCCeEEeCceEEEEEecCCeEEEEEccCCceeEE
Q psy9141          67 -IGLEDKLLAHGIPMRARMIHGQNGKLREIPYDPVHNQ--VELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKI  143 (379)
Q Consensus        67 -lGl~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~--~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~  143 (379)
                       .|+....   ..........  ++. ..+........  ..+.+..+++|+++++|++++.++++|++++. +|++   
T Consensus        82 ~~g~~~~~---~~~~~~~~~~--~~~-~~~~~~~g~~~l~~~l~~~~g~~i~~~~~V~~i~~~~~~~~v~~~-~g~~---  151 (342)
T 3qj4_A           82 AYGVLRPL---SSPIEGMVMK--EGD-CNFVAPQGISSIIKHYLKESGAEVYFRHRVTQINLRDDKWEVSKQ-TGSP---  151 (342)
T ss_dssp             HTTSCEEC---CSCEETCCC----CC-EEEECTTCTTHHHHHHHHHHTCEEESSCCEEEEEECSSSEEEEES-SSCC---
T ss_pred             hCCCeecC---chhhcceecc--CCc-cceecCCCHHHHHHHHHHhcCCEEEeCCEEEEEEEcCCEEEEEEC-CCCE---
Confidence             1211000   0000000000  111 11111111111  23333238999999999999999999999998 8887   


Q ss_pred             EeecEEEecCCCC
Q psy9141         144 TDNQLIIGADGAY  156 (379)
Q Consensus       144 i~adlVV~AdG~~  156 (379)
                      +++|.||.|....
T Consensus       152 ~~ad~vV~A~p~~  164 (342)
T 3qj4_A          152 EQFDLIVLTMPVP  164 (342)
T ss_dssp             EEESEEEECSCHH
T ss_pred             EEcCEEEECCCHH
Confidence            8999999998743

>2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A*

Probab=99.11  E-value=1.9e-10  Score=116.76  Aligned_cols=145  Identities=17%  Similarity=0.200  Sum_probs=85.7

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCcEEEEccCC-CCCCCCCCCCcccccccC-HHHHHHHHHCC-ChHHHHhC-CCCce
Q psy9141           6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEARE-DIRNSGLSEGKSINLALS-VRGREALRRIG-LEDKLLAH-GIPMR   81 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~-~~~~~~~~~g~~i~~al~-~~~~~~l~~lG-l~~~l~~~-~~~~~   81 (379)
                      ++||+|||||++|+.+|+.|++.|.+|+|||+.. .....+ + ...+. .+. ....+.++.+| .+...... +..  
T Consensus        27 ~yDVIVIGgG~AGl~AAlalAr~G~kVlLIEk~~~~iG~~~-C-nps~G-Gia~g~lv~eldalgg~~~~~~d~~gi~--  101 (637)
T 2zxi_A           27 EFDVVVIGGGHAGIEAALAAARMGAKTAMFVLNADTIGQMS-C-NPAIG-GIAKGIVVREIDALGGEMGKAIDQTGIQ--  101 (637)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCC-S-CSEEE-CTTHHHHHHHHHHHTCSHHHHHHHHEEE--
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCCEEEEEecccccCCcC-c-ccccc-ccchHHHHHHHHHhhhHHHHHhhhcccc--
Confidence            5899999999999999999999999999999984 222111 1 11110 111 22334455554 34433221 111  


Q ss_pred             eeEEEec-CCcE-EEe--eCCCC-CcH---HHHhcCCCCeEEeCceEEEEEecCCeEE-EEEccCCceeEEEeecEEEec
Q psy9141          82 ARMIHGQ-NGKL-REI--PYDPV-HNQ---VELEQYPDCNIYFQHKLINLDVNSGNVT-FYRTEDNSETKITDNQLIIGA  152 (379)
Q Consensus        82 ~~~~~~~-~g~~-~~~--~~~~~-~~~---~~~~~~~gv~i~~~~~v~~i~~~~~~v~-v~~~~~G~~~~~i~adlVV~A  152 (379)
                       +...+. .+.. ...  ..+.. ..+   ..+.+.+|++| ++++|+++..+++.+. |.+. +|.+   +.||.||.|
T Consensus       102 -f~~l~~~kGpav~~~r~~~Dr~~~~~~L~~~Le~~~GVeI-~~~~Vt~L~~e~g~V~GV~t~-dG~~---i~AdaVVLA  175 (637)
T 2zxi_A          102 -FKMLNTRKGKAVQSPRAQADKKRYREYMKKVCENQENLYI-KQEEVVDIIVKNNQVVGVRTN-LGVE---YKTKAVVVT  175 (637)
T ss_dssp             -EEEESTTSCGGGCEEEEEECHHHHHHHHHHHHHTCTTEEE-EESCEEEEEESSSBEEEEEET-TSCE---EECSEEEEC
T ss_pred             -eeecccccCccccchhhhCCHHHHHHHHHHHHHhCCCCEE-EEeEEEEEEecCCEEEEEEEC-CCcE---EEeCEEEEc
Confidence             111111 1110 000  00000 001   23344479999 5679999988777664 7777 8876   999999999


Q ss_pred             CCCChHHHH
Q psy9141         153 DGAYSGVRK  161 (379)
Q Consensus       153 dG~~S~vr~  161 (379)
                      +|.+|..+.
T Consensus       176 TG~~s~~~~  184 (637)
T 2zxi_A          176 TGTFLNGVI  184 (637)
T ss_dssp             CTTCBTCEE
T ss_pred             cCCCccCce
Confidence            999876543

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=99.10  E-value=4.7e-10  Score=104.70  Aligned_cols=106  Identities=12%  Similarity=0.093  Sum_probs=73.3

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeEE
Q psy9141           6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARMI   85 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~~   85 (379)
                      .+||+||||||+|+++|+.|++.|++|+|||+.  .       |...  .  .                 .      ...
T Consensus        15 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~--~-------gg~~--~--~-----------------~------~~~   58 (323)
T 3f8d_A           15 KFDVIIVGLGPAAYGAALYSARYMLKTLVIGET--P-------GGQL--T--E-----------------A------GIV   58 (323)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESS--T-------TGGG--G--G-----------------C------CEE
T ss_pred             ccCEEEECccHHHHHHHHHHHHCCCcEEEEecc--C-------CCee--c--c-----------------c------ccc
Confidence            479999999999999999999999999999987  2       2111  0  0                 0      000


Q ss_pred             EecCCcEEEeeCCCCCcH------HHHhcCCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEEEecCCCChH
Q psy9141          86 HGQNGKLREIPYDPVHNQ------VELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAYSG  158 (379)
Q Consensus        86 ~~~~g~~~~~~~~~~~~~------~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlVV~AdG~~S~  158 (379)
                      +...+      +......      .......++++++ ++|++++.+++.+.+.+. +|.+   +.+|.||.|+|..+.
T Consensus        59 ~~~~~------~~~~~~~~~~~~~~~~~~~~~v~~~~-~~v~~i~~~~~~~~v~~~-~g~~---~~~d~lvlAtG~~~~  126 (323)
T 3f8d_A           59 DDYLG------LIEIQASDMIKVFNKHIEKYEVPVLL-DIVEKIENRGDEFVVKTK-RKGE---FKADSVILGIGVKRR  126 (323)
T ss_dssp             CCSTT------STTEEHHHHHHHHHHHHHTTTCCEEE-SCEEEEEEC--CEEEEES-SSCE---EEEEEEEECCCCEEC
T ss_pred             cccCC------CCCCCHHHHHHHHHHHHHHcCCEEEE-EEEEEEEecCCEEEEEEC-CCCE---EEcCEEEECcCCCCc
Confidence            00000      0000000      2333446899999 899999998888889888 8777   999999999998853

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}

Probab=99.10  E-value=1.6e-10  Score=110.41  Aligned_cols=123  Identities=14%  Similarity=0.172  Sum_probs=79.4

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceee
Q psy9141           4 NSKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRAR   83 (379)
Q Consensus         4 m~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~   83 (379)
                      |..+||+||||||+|+++|+.|++.|++|+|||+.+...      |.                   |...    .+..  
T Consensus        12 ~~~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~g------g~-------------------~~~~----~~~~--   60 (360)
T 3ab1_A           12 HDMRDLTIIGGGPTGIFAAFQCGMNNISCRIIESMPQLG------GQ-------------------LAAL----YPEK--   60 (360)
T ss_dssp             -CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSC------HH-------------------HHHT----CTTS--
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCC------Cc-------------------cccc----CCCc--
Confidence            346899999999999999999999999999999986442      11                   0000    0000  


Q ss_pred             EEEecCCcEEEeeCCCCCcH-HHHhcCCCCeEEeCceEEEEEecCC-eEEEEEccCCceeEEEeecEEEecCCCChHHHH
Q psy9141          84 MIHGQNGKLREIPYDPVHNQ-VELEQYPDCNIYFQHKLINLDVNSG-NVTFYRTEDNSETKITDNQLIIGADGAYSGVRK  161 (379)
Q Consensus        84 ~~~~~~g~~~~~~~~~~~~~-~~~~~~~gv~i~~~~~v~~i~~~~~-~v~v~~~~~G~~~~~i~adlVV~AdG~~S~vr~  161 (379)
                      .+++..+.. .......... .......+++++++++|++++.+++ .+++++. +|++   +++|.||.|+|.+|..++
T Consensus        61 ~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~v~~~-~g~~---~~~~~li~AtG~~~~~~~  135 (360)
T 3ab1_A           61 HIYDVAGFP-EVPAIDLVESLWAQAERYNPDVVLNETVTKYTKLDDGTFETRTN-TGNV---YRSRAVLIAAGLGAFEPR  135 (360)
T ss_dssp             EECCSTTCS-SEEHHHHHHHHHHHHHTTCCEEECSCCEEEEEECTTSCEEEEET-TSCE---EEEEEEEECCTTCSCCBC
T ss_pred             ccccCCCCC-CCCHHHHHHHHHHHHHHhCCEEEcCCEEEEEEECCCceEEEEEC-CCcE---EEeeEEEEccCCCcCCCC
Confidence            011100000 0000000000 2223345799999999999998765 7888888 8876   999999999999875544


Q ss_pred             H
Q psy9141         162 C  162 (379)
Q Consensus       162 ~  162 (379)
                      .
T Consensus       136 ~  136 (360)
T 3ab1_A          136 K  136 (360)
T ss_dssp             C
T ss_pred             C
Confidence            3

>3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum}

Probab=99.09  E-value=3.1e-10  Score=115.53  Aligned_cols=145  Identities=17%  Similarity=0.209  Sum_probs=83.5

Q ss_pred             CCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCC-CCCCCCCCCccccccc-CHHHHHHHHHCC-ChHHHHhC-CCCc
Q psy9141           5 SKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEARED-IRNSGLSEGKSINLAL-SVRGREALRRIG-LEDKLLAH-GIPM   80 (379)
Q Consensus         5 ~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~-~~~~~~~~g~~i~~al-~~~~~~~l~~lG-l~~~l~~~-~~~~   80 (379)
                      .++||+|||||++|+++|+.|++.|.+|+|+|+.+. ....+ + ...+. .+ .....+.++.++ +....... +.. 
T Consensus        20 ~~yDVIVIGgG~AGl~AAlaLAr~G~kVlLIEk~~~~iG~~~-c-~ps~g-Gia~~~lv~el~al~g~~~~~~d~~gi~-   95 (641)
T 3cp8_A           20 HMYDVIVVGAGHAGCEAALAVARGGLHCLLITSDLSAVARMS-C-NPAIG-GVAKGQITREIDALGGEMGKAIDATGIQ-   95 (641)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCS-S-CSEEE-CHHHHHHHHHHHHHTCSHHHHHHHHEEE-
T ss_pred             CcCCEEEECccHHHHHHHHHHHHCCCcEEEEEecccccCCCc-c-ccchh-hhhHHHHHHHHHhcccHHHHHHHhcCCc-
Confidence            468999999999999999999999999999999852 22111 1 11110 00 011222233332 22222111 111 


Q ss_pred             eeeEEEec-CCcE---EEeeCCCC-CcH---HHHhcCCCCeEEeCceEEEEEecCCeEE-EEEccCCceeEEEeecEEEe
Q psy9141          81 RARMIHGQ-NGKL---REIPYDPV-HNQ---VELEQYPDCNIYFQHKLINLDVNSGNVT-FYRTEDNSETKITDNQLIIG  151 (379)
Q Consensus        81 ~~~~~~~~-~g~~---~~~~~~~~-~~~---~~~~~~~gv~i~~~~~v~~i~~~~~~v~-v~~~~~G~~~~~i~adlVV~  151 (379)
                        +...+. .+..   .....+.. ..+   ..+.+.+|++++. .+|+++..+++.+. |.+. +|.+   ++||.||.
T Consensus        96 --f~~l~~~kgpav~~~r~~~Dr~~l~~~L~~~l~~~~GV~I~~-~~V~~L~~d~g~V~GV~t~-~G~~---i~Ad~VVL  168 (641)
T 3cp8_A           96 --FRMLNRSKGPAMHSPRAQADKTQYSLYMRRIVEHEPNIDLLQ-DTVIGVSANSGKFSSVTVR-SGRA---IQAKAAIL  168 (641)
T ss_dssp             --EEEECSSSCTTTCEEEEEECHHHHHHHHHHHHHTCTTEEEEE-CCEEEEEEETTEEEEEEET-TSCE---EEEEEEEE
T ss_pred             --hhhcccccCccccchhhhcCHHHHHHHHHHHHHhCCCCEEEe-eEEEEEEecCCEEEEEEEC-CCcE---EEeCEEEE
Confidence              111111 1100   00000000 001   3344447999964 58999988888877 7777 8876   99999999


Q ss_pred             cCCCChHHH
Q psy9141         152 ADGAYSGVR  160 (379)
Q Consensus       152 AdG~~S~vr  160 (379)
                      |+|.++..+
T Consensus       169 ATG~~s~~~  177 (641)
T 3cp8_A          169 ACGTFLNGL  177 (641)
T ss_dssp             CCTTCBTCE
T ss_pred             CcCCCCCcc
Confidence            999997643

>2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A* 2wu2_A* 2wu5_A*

Probab=99.08  E-value=1.2e-09  Score=111.29  Aligned_cols=37  Identities=16%  Similarity=0.176  Sum_probs=34.3

Q ss_pred             CCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCC
Q psy9141           5 SKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDI   41 (379)
Q Consensus         5 ~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~   41 (379)
                      .++||+|||||++||++|+.|++.|.+|+|+||.+..
T Consensus         6 ~~~DVvVVGaG~AGl~AA~~la~~G~~V~vlEK~~~~   42 (588)
T 2wdq_A            6 REFDAVVIGAGGAGMRAALQISQSGQTCALLSKVFPT   42 (588)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCGG
T ss_pred             ccCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence            3589999999999999999999999999999998755

>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A*

Probab=99.08  E-value=1.6e-10  Score=113.83  Aligned_cols=35  Identities=26%  Similarity=0.285  Sum_probs=33.0

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHhCC-CcEEEEccC
Q psy9141           4 NSKKSVVIVGGGLVGSLSACMFAKNQ-YEVNLYEAR   38 (379)
Q Consensus         4 m~~~dVvIVGaGpaGl~~A~~La~~G-~~V~viE~~   38 (379)
                      |+++||+|||||++|+++|+.|+++| .+|+|||+.
T Consensus        21 m~~~dVvIIGgGiaGls~A~~La~~G~~~V~vlE~~   56 (448)
T 3axb_A           21 MPRFDYVVVGAGVVGLAAAYYLKVWSGGSVLVVDAG   56 (448)
T ss_dssp             CCEEEEEEECCSHHHHHHHHHHHHHHCSCEEEEESS
T ss_pred             CCcCCEEEECcCHHHHHHHHHHHhCCCCcEEEEccC
Confidence            66789999999999999999999999 999999993

>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*

Probab=99.08  E-value=5.5e-10  Score=104.19  Aligned_cols=36  Identities=11%  Similarity=0.338  Sum_probs=32.7

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCC
Q psy9141           4 NSKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEARE   39 (379)
Q Consensus         4 m~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~   39 (379)
                      |++|||+||||||+|+++|+.|+|.|++|+|||+..
T Consensus         4 M~~yDVvIIGaGpAGlsAA~~lar~g~~v~lie~~~   39 (304)
T 4fk1_A            4 MKYIDCAVIGAGPAGLNASLVLGRARKQIALFDNNT   39 (304)
T ss_dssp             --CEEEEEECCSHHHHHHHHHHHHTTCCEEEEECSC
T ss_pred             CCCcCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            789999999999999999999999999999999864

>2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A* 3aec_A* ...

Probab=99.08  E-value=1.4e-09  Score=111.31  Aligned_cols=152  Identities=14%  Similarity=0.123  Sum_probs=85.0

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccC---HHHH-----HHHHHC-C--------
Q psy9141           6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALS---VRGR-----EALRRI-G--------   68 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~---~~~~-----~~l~~l-G--------   68 (379)
                      ++||+|||||++||++|+.|++.|.+|+||||.+.....+...+.++...+.   ..+.     ..++.- +        
T Consensus        18 ~~DVvVVG~G~AGl~AAl~aa~~G~~V~vlEK~~~~~g~s~~a~GGi~a~~~~~~~ds~~~~~~dtl~~g~~l~d~~~v~   97 (621)
T 2h88_A           18 EFDAVVVGAGGAGLRAAFGLSEAGFNTACVTKLFPTRSHTVAAQGGINAALGNMEDDNWRWHFYDTVKGSDWLGDQDAIH   97 (621)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCGGGSGGGGCCSCEECCCCSSSCCCHHHHHHHHHHHTTTCSCHHHHH
T ss_pred             cCCEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCCCCchhhCCCcEecCCCCCCCCHHHHHHHHHHhcCCCCCHHHHH
Confidence            4799999999999999999999999999999987543222111222211111   0111     111110 0        


Q ss_pred             --------ChHHHHhCCCCcee-----eEEEecCCcEE---------EeeCC-CCCcH------HHHhcCCCCeEEeCce
Q psy9141          69 --------LEDKLLAHGIPMRA-----RMIHGQNGKLR---------EIPYD-PVHNQ------VELEQYPDCNIYFQHK  119 (379)
Q Consensus        69 --------l~~~l~~~~~~~~~-----~~~~~~~g~~~---------~~~~~-~~~~~------~~~~~~~gv~i~~~~~  119 (379)
                              ..+.+...+.++..     +......+...         +..+. ...++      .......+++|+.++.
T Consensus        98 ~l~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~s~~~g~~~~~~R~~~~~d~tG~~l~~~L~~~~~~~gv~i~~~~~  177 (621)
T 2h88_A           98 YMTEQAPAAVIELENYGMPFSRTEEGKIYQRAFGGQSLQFGKGGQAHRCCCVADRTGHSLLHTLYGRSLRYDTSYFVEYF  177 (621)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCCBCTTSSBCEECCTTCBSTTTTSCBCCCEECSTTCHHHHHHHHHHHHHTTSCCEEEETEE
T ss_pred             HHHHHHHHHHHHHHHcCCCcccCCCCceeccccCcccccccCCCcceeEEEecCCCHHHHHHHHHHHHHhCCCEEEEceE
Confidence                    11122233433321     00000111100         00011 00111      2223347999999999


Q ss_pred             EEEEEecCCeEE---EEE-ccCCceeEEEeecEEEecCCCChHH
Q psy9141         120 LINLDVNSGNVT---FYR-TEDNSETKITDNQLIIGADGAYSGV  159 (379)
Q Consensus       120 v~~i~~~~~~v~---v~~-~~~G~~~~~i~adlVV~AdG~~S~v  159 (379)
                      |+++..+++.+.   +.. . +|+..+ +.|+.||.|+|.+|.+
T Consensus       178 v~~Li~~~g~v~Gv~~~~~~-~G~~~~-i~A~~VVlATGG~~~~  219 (621)
T 2h88_A          178 ALDLLMENGECRGVIALCIE-DGTIHR-FRAKNTVIATGGYGRT  219 (621)
T ss_dssp             EEEEEEETTEEEEEEEEETT-TCCEEE-EEEEEEEECCCCCGGG
T ss_pred             EEEEEEECCEEEEEEEEEcC-CCcEEE-EEcCeEEECCCccccc
Confidence            999987766543   333 4 777556 9999999999999864

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=99.08  E-value=5.3e-10  Score=103.21  Aligned_cols=105  Identities=20%  Similarity=0.256  Sum_probs=73.7

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeEEE
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARMIH   86 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~   86 (379)
                      +||+||||||+|+++|..|++.|++|+|+|+.+.....+   ...                        ...+       
T Consensus         3 ~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~~~~~---~~~------------------------~~~~-------   48 (297)
T 3fbs_A            3 FDVIIIGGSYAGLSAALQLGRARKNILLVDAGERRNRFA---SHS------------------------HGFL-------   48 (297)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCCGGGGC---SCC------------------------CSST-------
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCcccccc---hhh------------------------cCCc-------
Confidence            799999999999999999999999999999875221000   000                        0000       


Q ss_pred             ecCCcEEEeeCCCCCcH-------HHHhcCCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEEEecCCCChHH
Q psy9141          87 GQNGKLREIPYDPVHNQ-------VELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAYSGV  159 (379)
Q Consensus        87 ~~~g~~~~~~~~~~~~~-------~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlVV~AdG~~S~v  159 (379)
                         +      +......       ..+.+.++++++.+ +|++++.+++++.+.+. +|++   +++|.||.|+|..+..
T Consensus        49 ---~------~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~v~~i~~~~~~~~v~~~-~g~~---~~~d~vviAtG~~~~~  114 (297)
T 3fbs_A           49 ---G------QDGKAPGEIIAEARRQIERYPTIHWVEG-RVTDAKGSFGEFIVEID-GGRR---ETAGRLILAMGVTDEL  114 (297)
T ss_dssp             ---T------CTTCCHHHHHHHHHHHHTTCTTEEEEES-CEEEEEEETTEEEEEET-TSCE---EEEEEEEECCCCEEEC
T ss_pred             ---C------CCCCCHHHHHHHHHHHHHhcCCeEEEEe-EEEEEEEcCCeEEEEEC-CCCE---EEcCEEEECCCCCCCC
Confidence               0      0000000       23334447777654 89999998888999998 8887   9999999999997643

>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} PDB: 3fpz_A*

Probab=99.07  E-value=2.9e-10  Score=106.89  Aligned_cols=142  Identities=15%  Similarity=0.223  Sum_probs=84.2

Q ss_pred             CCcEEEECCChHHHHHHHHHHhC--CCcEEEEccCCCCCCCCCCCCccc-ccccCHHHHHHHHHCCChHHHHhCCCCcee
Q psy9141           6 KKSVVIVGGGLVGSLSACMFAKN--QYEVNLYEAREDIRNSGLSEGKSI-NLALSVRGREALRRIGLEDKLLAHGIPMRA   82 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La~~--G~~V~viE~~~~~~~~~~~~g~~i-~~al~~~~~~~l~~lGl~~~l~~~~~~~~~   82 (379)
                      ++||+||||||+|+++|+.|++.  |++|+|+|+.+.+.......+... ...+.+...+.|+.+|+.-         ..
T Consensus        65 ~~dv~IiG~G~aGl~aA~~la~~~~g~~V~v~e~~~~~ggg~~~~g~~~~~~~~~~~~~~~L~~~Gv~~---------~~  135 (326)
T 2gjc_A           65 VSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSWLGGQLFSAMVMRKPAHLFLQELEIPY---------ED  135 (326)
T ss_dssp             EESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCCTTTTCCGGGCCCEEEETTTHHHHHHTTCCC---------EE
T ss_pred             cCCEEEECccHHHHHHHHHHHhcCCCCeEEEEecCccccccccccCcccchhhhhhHHHHHHHhhCccc---------cc
Confidence            46999999999999999999998  999999999886642211111100 0112344566666666421         10


Q ss_pred             eEEEecCCcEEEeeCCCCCcH---HHHhcCCCCeEEeCceEEEEEecC----C--eEE-EEEc-----cCC------cee
Q psy9141          83 RMIHGQNGKLREIPYDPVHNQ---VELEQYPDCNIYFQHKLINLDVNS----G--NVT-FYRT-----EDN------SET  141 (379)
Q Consensus        83 ~~~~~~~g~~~~~~~~~~~~~---~~~~~~~gv~i~~~~~v~~i~~~~----~--~v~-v~~~-----~~G------~~~  141 (379)
                            .+.............   ..+.+.++++++.+++|+++..++    +  .+. +...     .+|      +..
T Consensus       136 ------~g~~~~~~~~~~~~~~L~~~a~~~~GV~i~~~~~V~~Ll~~~~~~~g~~rV~GVvv~~~~v~~~g~~~~~~d~~  209 (326)
T 2gjc_A          136 ------EGDYVVVKHAALFISTVLSKVLQLPNVKLFNATCVEDLVTRPPTEKGEVTVAGVVTNWTLVTQAHGTQCCMDPN  209 (326)
T ss_dssp             ------CSSEEEESCHHHHHHHHHHHHHTSTTEEEETTEEEEEEEECCCC-----CEEEEEEEEHHHHTC---CCCCCCE
T ss_pred             ------CCCeEEEcchHHHHHHHHHHHHHhcCcEEEecceeeeeeecccccCCCcEEEEEEecceeecccccceeccCce
Confidence                  011111000000001   344455799999999999998763    3  332 2210     122      223


Q ss_pred             EEEee---------------cEEEecCCCChHHHHHh
Q psy9141         142 KITDN---------------QLIIGADGAYSGVRKCL  163 (379)
Q Consensus       142 ~~i~a---------------dlVV~AdG~~S~vr~~l  163 (379)
                      + +.|               ++||+|+|..|.+.+++
T Consensus       210 ~-I~A~G~~~~~~~~~~~~~~~VV~ATG~~~~~~~~~  245 (326)
T 2gjc_A          210 V-IELAGYKNDGTRDLSQKHGVILSTTGHDGPFGAFC  245 (326)
T ss_dssp             E-EEESCCCSSSCCCSSTTCCEEEECCCCC--CCSHH
T ss_pred             E-EEEeeccccccccccccCCEEEECcCCCchHHHHH
Confidence            4 899               99999999999877766

>2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A*

Probab=99.04  E-value=8.5e-10  Score=112.16  Aligned_cols=38  Identities=24%  Similarity=0.377  Sum_probs=34.7

Q ss_pred             CCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCC
Q psy9141           5 SKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIR   42 (379)
Q Consensus         5 ~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~   42 (379)
                      ..+||+|||||++|+++|+.|+++|++|+|+|+.+...
T Consensus        31 ~~~DVvVIGgGi~G~~~A~~La~rG~~V~LlE~~~~~~   68 (571)
T 2rgh_A           31 EELDLLIIGGGITGAGVAVQAAASGIKTGLIEMQDFAE   68 (571)
T ss_dssp             SCBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSTTC
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCC
Confidence            35899999999999999999999999999999987554

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*

Probab=99.03  E-value=8.8e-10  Score=111.26  Aligned_cols=133  Identities=11%  Similarity=0.100  Sum_probs=77.3

Q ss_pred             CCCcEEEECCChHHHHHHHHHH-hCCCcEEEEccCCCCCCCC---CCCCcccccccCHHHHHHHHHCCChHHHHhCCCCc
Q psy9141           5 SKKSVVIVGGGLVGSLSACMFA-KNQYEVNLYEAREDIRNSG---LSEGKSINLALSVRGREALRRIGLEDKLLAHGIPM   80 (379)
Q Consensus         5 ~~~dVvIVGaGpaGl~~A~~La-~~G~~V~viE~~~~~~~~~---~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~   80 (379)
                      .++||+|||||++|+++|..|+ +.|++|+|||+.+......   .+.|....  +..    .+......+.+... ...
T Consensus         7 ~~~dVvIIGaG~aGl~aA~~L~~~~G~~v~viE~~~~~GGtw~~~~ypg~~~d--~~s----~~~~~~~~~~~~~~-~~~   79 (540)
T 3gwf_A            7 HTVDAVVIGAGFGGIYAVHKLHHELGLTTVGFDKADGPGGTWYWNRYPGALSD--TES----HLYRFSFDRDLLQE-STW   79 (540)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSSCTHHHHCCCTTCEEE--EEG----GGSSCCSCHHHHHH-CCC
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHcCCCCEEEEECCCCCCCcccccCCCCceec--CCc----ceeeeccccccccC-CCC
Confidence            4589999999999999999999 9999999999987543110   00000000  000    00000000000000 000


Q ss_pred             eeeEEEecCCcEEEeeCCCCCcH-HHHhcCCCC--eEEeCceEEEEEecCC--eEEEEEccCCceeEEEeecEEEecCCC
Q psy9141          81 RARMIHGQNGKLREIPYDPVHNQ-VELEQYPDC--NIYFQHKLINLDVNSG--NVTFYRTEDNSETKITDNQLIIGADGA  155 (379)
Q Consensus        81 ~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~gv--~i~~~~~v~~i~~~~~--~v~v~~~~~G~~~~~i~adlVV~AdG~  155 (379)
                              ... . ......... ....+..++  .++++++|++++.+++  .++|++. +|++   ++||.||.|+|.
T Consensus        80 --------~~~-~-~~~~ei~~~l~~~~~~~g~~~~i~~~~~V~~i~~~~~~~~~~V~~~-~G~~---i~ad~lV~AtG~  145 (540)
T 3gwf_A           80 --------KTT-Y-ITQPEILEYLEDVVDRFDLRRHFKFGTEVTSALYLDDENLWEVTTD-HGEV---YRAKYVVNAVGL  145 (540)
T ss_dssp             --------SBS-E-EEHHHHHHHHHHHHHHTTCGGGEEESCCEEEEEEETTTTEEEEEET-TSCE---EEEEEEEECCCS
T ss_pred             --------ccc-C-CCHHHHHHHHHHHHHHcCCcceeEeccEEEEEEEeCCCCEEEEEEc-CCCE---EEeCEEEECCcc
Confidence                    000 0 000000000 222333466  8999999999988765  7889998 8987   999999999998


Q ss_pred             ChH
Q psy9141         156 YSG  158 (379)
Q Consensus       156 ~S~  158 (379)
                      +|.
T Consensus       146 ~s~  148 (540)
T 3gwf_A          146 LSA  148 (540)
T ss_dssp             CCS
T ss_pred             ccc
Confidence            774

>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A*

Probab=99.02  E-value=9.2e-10  Score=109.12  Aligned_cols=72  Identities=21%  Similarity=0.256  Sum_probs=48.1

Q ss_pred             CCCCCCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCC---CCCC------cccccccCHHHHHHHHHCCChH
Q psy9141           1 MKCNSKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSG---LSEG------KSINLALSVRGREALRRIGLED   71 (379)
Q Consensus         1 M~~m~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~---~~~g------~~i~~al~~~~~~~l~~lGl~~   71 (379)
                      |+...++||+|||||++||++|+.|++.|++|+|+|+.+......   ..+|      ..+-..-.+...++++++|+.+
T Consensus        11 ~~~~~~~~v~iiG~G~~Gl~aa~~l~~~g~~v~v~E~~~~~GGr~~t~~~~g~~~~~g~~~~~~~~~~~~~~~~~~gl~~   90 (478)
T 2ivd_A           11 MPRTTGMNVAVVGGGISGLAVAHHLRSRGTDAVLLESSARLGGAVGTHALAGYLVEQGPNSFLDREPATRALAAALNLEG   90 (478)
T ss_dssp             ------CCEEEECCBHHHHHHHHHHHTTTCCEEEECSSSSSBTTCCEEEETTEEEESSCCCEETTCHHHHHHHHHTTCGG
T ss_pred             CCCCCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCCCceeeeeccCCeeeecChhhhhhhhHHHHHHHHHcCCcc
Confidence            333456899999999999999999999999999999998654210   0011      1110011467889999999854


Q ss_pred             H
Q psy9141          72 K   72 (379)
Q Consensus        72 ~   72 (379)
                      .
T Consensus        91 ~   91 (478)
T 2ivd_A           91 R   91 (478)
T ss_dssp             G
T ss_pred             e
Confidence            3

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=99.02  E-value=5.3e-10  Score=104.91  Aligned_cols=117  Identities=19%  Similarity=0.249  Sum_probs=76.3

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceee
Q psy9141           4 NSKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRAR   83 (379)
Q Consensus         4 m~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~   83 (379)
                      +..+||+||||||+|+++|+.|++.|++|+|||+.+...      |.                   |....    +.  .
T Consensus         5 ~~~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~g------G~-------------------~~~~~----~~--~   53 (332)
T 3lzw_A            5 TKVYDITIIGGGPVGLFTAFYGGMRQASVKIIESLPQLG------GQ-------------------LSALY----PE--K   53 (332)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSC------HH-------------------HHHHC----TT--S
T ss_pred             CccceEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCCC------ce-------------------ehhcC----CC--c
Confidence            345799999999999999999999999999999987542      11                   00000    00  0


Q ss_pred             EEEecCCcEEEeeCCCCCcH-HHHhcCCCCeEEeCceEEEEEecCC-eEEEEEccCCceeEEEeecEEEecCCCCh
Q psy9141          84 MIHGQNGKLREIPYDPVHNQ-VELEQYPDCNIYFQHKLINLDVNSG-NVTFYRTEDNSETKITDNQLIIGADGAYS  157 (379)
Q Consensus        84 ~~~~~~g~~~~~~~~~~~~~-~~~~~~~gv~i~~~~~v~~i~~~~~-~v~v~~~~~G~~~~~i~adlVV~AdG~~S  157 (379)
                      .+++..+... ......... .......+++++++++|++++.+++ .+.+.+. +|+    +.+|.||.|+|.+|
T Consensus        54 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~v~~~-~g~----~~~d~vVlAtG~~~  123 (332)
T 3lzw_A           54 YIYDVAGFPK-IRAQELINNLKEQMAKFDQTICLEQAVESVEKQADGVFKLVTN-EET----HYSKTVIITAGNGA  123 (332)
T ss_dssp             EECCSTTCSS-EEHHHHHHHHHHHHTTSCCEEECSCCEEEEEECTTSCEEEEES-SEE----EEEEEEEECCTTSC
T ss_pred             eEeccCCCCC-CCHHHHHHHHHHHHHHhCCcEEccCEEEEEEECCCCcEEEEEC-CCE----EEeCEEEECCCCCc
Confidence            0111111000 000000000 2333445899999999999998876 7888887 764    88999999999955

>2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A {Sulfolobus tokodaii}

Probab=99.01  E-value=1.9e-09  Score=107.07  Aligned_cols=147  Identities=16%  Similarity=0.214  Sum_probs=79.5

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCH----H--HHHHHHH-C-------------
Q psy9141           8 SVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSV----R--GREALRR-I-------------   67 (379)
Q Consensus         8 dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~----~--~~~~l~~-l-------------   67 (379)
                      ||+|||||++|+++|+.|++.|.+|+|+||. .....+...+.++...+.+    .  ....++. -             
T Consensus         1 DVvVIG~G~AGl~aA~~la~~G~~V~viek~-~~~g~s~~a~Ggi~~~~~~~d~~~~~~~d~l~~g~~~~d~~~v~~~~~   79 (472)
T 2e5v_A            1 MIYIIGSGIAGLSAGVALRRAGKKVTLISKR-IDGGSTPIAKGGVAASVGSDDSPELHAQDTIRVGDGLCDVKTVNYVTS   79 (472)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEECSS-TTCSSGGGCCSCEECCCSTTCCHHHHHHHHHHHHTTCSCHHHHHHHHH
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEeCC-CCCchHHHHhCCeEEeCCCCCCHHHHHHHHHHhcCCcCCHHHHHHHHH
Confidence            7999999999999999999999999999998 3322211112222111211    0  0001100 0             


Q ss_pred             ---CChHHHHhCCCCceeeEEEecCCcE--EEeeCCCCCcH-------HHHhcCCCCeEEeCceEEEEEecCCeEE-EEE
Q psy9141          68 ---GLEDKLLAHGIPMRARMIHGQNGKL--REIPYDPVHNQ-------VELEQYPDCNIYFQHKLINLDVNSGNVT-FYR  134 (379)
Q Consensus        68 ---Gl~~~l~~~~~~~~~~~~~~~~g~~--~~~~~~~~~~~-------~~~~~~~gv~i~~~~~v~~i~~~~~~v~-v~~  134 (379)
                         ...+.+...+.++... .....+..  .........+.       ..+ +..+++++.+++| ++..+++.+. +..
T Consensus        80 ~~~~~i~~l~~~Gv~~~~~-~~~~~g~~~~r~~~~~d~~g~~l~~~L~~~~-~~~gv~i~~~~~v-~l~~~~~~v~Gv~v  156 (472)
T 2e5v_A           80 EAKNVIETFESWGFEFEED-LRLEGGHTKRRVLHRTDETGREIFNFLLKLA-REEGIPIIEDRLV-EIRVKDGKVTGFVT  156 (472)
T ss_dssp             HHHHHHHHHHHTTCCCCSS-CBCCTTCSSCCEECSSSCHHHHHHHHHHHHH-HHTTCCEECCCEE-EEEEETTEEEEEEE
T ss_pred             HHHHHHHHHHHcCCCCCcc-cccccCcCcCcEEEeCCCCHHHHHHHHHHHH-HhCCCEEEECcEE-EEEEeCCEEEEEEE
Confidence               0112222233333210 00001110  00111111111       222 4469999999999 9987777653 333


Q ss_pred             ccCCceeEEEeecEEEecCCCChHHHH
Q psy9141         135 TEDNSETKITDNQLIIGADGAYSGVRK  161 (379)
Q Consensus       135 ~~~G~~~~~i~adlVV~AdG~~S~vr~  161 (379)
                      ..++.+   +.||.||.|+|.+|.+..
T Consensus       157 ~~~~g~---~~a~~VVlAtGg~~~~~~  180 (472)
T 2e5v_A          157 EKRGLV---EDVDKLVLATGGYSYLYE  180 (472)
T ss_dssp             TTTEEE---CCCSEEEECCCCCGGGSS
T ss_pred             EeCCCe---EEeeeEEECCCCCcccCc
Confidence            212223   789999999999998764

>2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A*

Probab=99.01  E-value=2.2e-09  Score=110.67  Aligned_cols=40  Identities=20%  Similarity=0.221  Sum_probs=35.7

Q ss_pred             CCCCCCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCC
Q psy9141           1 MKCNSKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDI   41 (379)
Q Consensus         1 M~~m~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~   41 (379)
                      |+ +.++||+|||||++||++|+.|++.|.+|+||||.+..
T Consensus         1 M~-~~~~DVvVIGgG~AGL~AAl~aae~G~~V~vlEK~~~~   40 (660)
T 2bs2_A            1 MK-VQYCDSLVIGGGLAGLRAAVATQQKGLSTIVLSLIPVK   40 (660)
T ss_dssp             CC-EEECSEEEECCSHHHHHHHHHHHTTTCCEEEECSSCGG
T ss_pred             CC-cccccEEEECchHHHHHHHHHHHHCCCcEEEEeccCCC
Confidence            44 34689999999999999999999999999999998754

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=98.99  E-value=2.3e-09  Score=99.89  Aligned_cols=110  Identities=15%  Similarity=0.103  Sum_probs=74.3

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCC-cEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeEE
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKNQY-EVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARMI   85 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~G~-~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~~   85 (379)
                      +||+||||||+|+++|+.|++.|+ +|+|+|+.. ..      |...   ..          ...     ...+      
T Consensus         2 ~dvvIIG~G~aGl~aA~~l~~~g~~~v~lie~~~-~g------g~~~---~~----------~~~-----~~~~------   50 (311)
T 2q0l_A            2 IDCAIIGGGPAGLSAGLYATRGGVKNAVLFEKGM-PG------GQIT---GS----------SEI-----ENYP------   50 (311)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCSSEEEECSSS-TT------CGGG---GC----------SCB-----CCST------
T ss_pred             ceEEEECccHHHHHHHHHHHHCCCCcEEEEcCCC-CC------cccc---cc----------ccc-----ccCC------
Confidence            699999999999999999999999 999999852 11      2110   00          000     0000      


Q ss_pred             EecCCcEEEeeCCCCCcH-----HHHhcCCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEEEecCCCChHHH
Q psy9141          86 HGQNGKLREIPYDPVHNQ-----VELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAYSGVR  160 (379)
Q Consensus        86 ~~~~g~~~~~~~~~~~~~-----~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlVV~AdG~~S~vr  160 (379)
                          +    ++.......     .......++++++ ++|++++.+++.+++.+. +|++   +++|.||.|+|.++...
T Consensus        51 ----~----~~~~~~~~~~~~~l~~~~~~~~v~~~~-~~v~~i~~~~~~~~v~~~-~g~~---~~~~~vv~AtG~~~~~~  117 (311)
T 2q0l_A           51 ----G----VKEVVSGLDFMQPWQEQCFRFGLKHEM-TAVQRVSKKDSHFVILAE-DGKT---FEAKSVIIATGGSPKRT  117 (311)
T ss_dssp             ----T----CCSCBCHHHHHHHHHHHHHTTSCEEEC-SCEEEEEEETTEEEEEET-TSCE---EEEEEEEECCCEEECCC
T ss_pred             ----C----CcccCCHHHHHHHHHHHHHHcCCEEEE-EEEEEEEEcCCEEEEEEc-CCCE---EECCEEEECCCCCCCCC
Confidence                0    000000000     2223345899988 789999988888888887 8876   99999999999877543

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=98.97  E-value=9.4e-10  Score=105.01  Aligned_cols=135  Identities=16%  Similarity=0.159  Sum_probs=76.9

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHhCCC-cEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCcee
Q psy9141           4 NSKKSVVIVGGGLVGSLSACMFAKNQY-EVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRA   82 (379)
Q Consensus         4 m~~~dVvIVGaGpaGl~~A~~La~~G~-~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~   82 (379)
                      |+++||+||||||+|+++|..|++.|+ +|+|||+.+ ............. .+.+..  ....+|+.+ +   ...   
T Consensus         2 m~~~~vvIIGaG~aGl~aA~~l~~~g~~~v~lie~~~-~Gg~~~~~~~~~~-~~~~~~--~~~~~g~~~-~---~~~---   70 (369)
T 3d1c_A            2 MQHHKVAIIGAGAAGIGMAITLKDFGITDVIILEKGT-VGHSFKHWPKSTR-TITPSF--TSNGFGMPD-M---NAI---   70 (369)
T ss_dssp             CCEEEEEEECCSHHHHHHHHHHHHTTCCCEEEECSSS-TTHHHHTSCTTCB-CSSCCC--CCGGGTCCC-T---TCS---
T ss_pred             CccCcEEEECcCHHHHHHHHHHHHcCCCcEEEEecCC-CCCccccCccccc-ccCcch--hcccCCchh-h---hhc---
Confidence            446899999999999999999999999 999999986 3110000000000 000000  000001100 0   000   


Q ss_pred             eEEEecCC-cEEEeeCCCCCcH------HHHhcCCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEEEecCCC
Q psy9141          83 RMIHGQNG-KLREIPYDPVHNQ------VELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGA  155 (379)
Q Consensus        83 ~~~~~~~g-~~~~~~~~~~~~~------~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlVV~AdG~  155 (379)
                          .... .............      ....+..+++++++++|++++.+++++++.+. +| +   +.+|.||.|+|.
T Consensus        71 ----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~-~g-~---~~~d~vVlAtG~  141 (369)
T 3d1c_A           71 ----SMDTSPAFTFNEEHISGETYAEYLQVVANHYELNIFENTVVTNISADDAYYTIATT-TE-T---YHADYIFVATGD  141 (369)
T ss_dssp             ----STTCCHHHHHCCSSCBHHHHHHHHHHHHHHTTCEEECSCCEEEEEECSSSEEEEES-SC-C---EEEEEEEECCCS
T ss_pred             ----cccccccccccccCCCHHHHHHHHHHHHHHcCCeEEeCCEEEEEEECCCeEEEEeC-CC-E---EEeCEEEECCCC
Confidence                0000 0000000011111      22333468999999999999988778888877 66 4   899999999999


Q ss_pred             ChH
Q psy9141         156 YSG  158 (379)
Q Consensus       156 ~S~  158 (379)
                      ++.
T Consensus       142 ~~~  144 (369)
T 3d1c_A          142 YNF  144 (369)
T ss_dssp             TTS
T ss_pred             CCc
Confidence            863

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}

Probab=98.95  E-value=2.1e-09  Score=100.96  Aligned_cols=110  Identities=21%  Similarity=0.201  Sum_probs=71.7

Q ss_pred             CCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeE
Q psy9141           5 SKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARM   84 (379)
Q Consensus         5 ~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~   84 (379)
                      ..+||+||||||+|+++|..|++.|++|+|||+.. ..      |...   ..          +..     ...+     
T Consensus         7 ~~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~-~g------g~~~---~~----------~~~-----~~~~-----   56 (325)
T 2q7v_A            7 HDYDVVIIGGGPAGLTAAIYTGRAQLSTLILEKGM-PG------GQIA---WS----------EEV-----ENFP-----   56 (325)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSC-TT------GGGG---GC----------SCB-----CCST-----
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHcCCcEEEEeCCC-CC------cccc---cc----------ccc-----ccCC-----
Confidence            35899999999999999999999999999999982 21      2110   00          000     0000     


Q ss_pred             EEecCCcEEEeeCCCCCcH-----HHHhcCCCCeEEeCceEEEEEec--CCe-EEEEEccCCceeEEEeecEEEecCCCC
Q psy9141          85 IHGQNGKLREIPYDPVHNQ-----VELEQYPDCNIYFQHKLINLDVN--SGN-VTFYRTEDNSETKITDNQLIIGADGAY  156 (379)
Q Consensus        85 ~~~~~g~~~~~~~~~~~~~-----~~~~~~~gv~i~~~~~v~~i~~~--~~~-v~v~~~~~G~~~~~i~adlVV~AdG~~  156 (379)
                           +    ++.......     ....+..+++++. .+|++++.+  ++. +++.+. +|++   +++|.||.|+|..
T Consensus        57 -----~----~~~~~~~~~~~~~l~~~~~~~gv~~~~-~~v~~i~~~~~~~~~~~v~~~-~g~~---~~~~~vv~AtG~~  122 (325)
T 2q7v_A           57 -----G----FPEPIAGMELAQRMHQQAEKFGAKVEM-DEVQGVQHDATSHPYPFTVRG-YNGE---YRAKAVILATGAD  122 (325)
T ss_dssp             -----T----CSSCBCHHHHHHHHHHHHHHTTCEEEE-CCEEEEEECTTSSSCCEEEEE-SSCE---EEEEEEEECCCEE
T ss_pred             -----C----CCCCCCHHHHHHHHHHHHHHcCCEEEe-eeEEEEEeccCCCceEEEEEC-CCCE---EEeCEEEECcCCC
Confidence                 0    000000000     1222335889887 589999876  443 677777 8876   9999999999987


Q ss_pred             hH
Q psy9141         157 SG  158 (379)
Q Consensus       157 S~  158 (379)
                      +.
T Consensus       123 ~~  124 (325)
T 2q7v_A          123 PR  124 (325)
T ss_dssp             EC
T ss_pred             cC
Confidence            64

>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ...

Probab=98.95  E-value=5.9e-09  Score=104.61  Aligned_cols=44  Identities=16%  Similarity=0.188  Sum_probs=39.5

Q ss_pred             CCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEEEecCCCChH
Q psy9141         111 DCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAYSG  158 (379)
Q Consensus       111 gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlVV~AdG~~S~  158 (379)
                      +++|+++++|++|+.+++++++++. +|++   ++||.||.|.+....
T Consensus       226 g~~i~~~~~V~~i~~~~~~v~v~~~-~g~~---~~ad~VI~a~p~~~l  269 (520)
T 1s3e_A          226 GDRVKLERPVIYIDQTRENVLVETL-NHEM---YEAKYVISAIPPTLG  269 (520)
T ss_dssp             GGGEESSCCEEEEECSSSSEEEEET-TSCE---EEESEEEECSCGGGG
T ss_pred             CCcEEcCCeeEEEEECCCeEEEEEC-CCeE---EEeCEEEECCCHHHH
Confidence            6789999999999998888999888 8877   999999999998863

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=98.94  E-value=2.6e-09  Score=100.39  Aligned_cols=113  Identities=20%  Similarity=0.257  Sum_probs=74.3

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeEE
Q psy9141           6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARMI   85 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~~   85 (379)
                      .+||+||||||+|+++|+.|++.|++|+|||+.+.....  . |..+.  ...                         .+
T Consensus        22 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~vie~~~~~~~~--~-gg~~~--~~~-------------------------~~   71 (338)
T 3itj_A           22 HNKVTIIGSGPAAHTAAIYLARAEIKPILYEGMMANGIA--A-GGQLT--TTT-------------------------EI   71 (338)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBC--T-TCGGG--GSS-------------------------EE
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEEecCCCCCCC--c-Ccccc--cch-------------------------hh
Confidence            479999999999999999999999999999997622111  1 11110  000                         00


Q ss_pred             EecCCcEEEeeCCCCC-c-H-----HHHhcCCCCeEEeCceEEEEEecCCeEEEEEc--cCCceeEEEeecEEEecCCCC
Q psy9141          86 HGQNGKLREIPYDPVH-N-Q-----VELEQYPDCNIYFQHKLINLDVNSGNVTFYRT--EDNSETKITDNQLIIGADGAY  156 (379)
Q Consensus        86 ~~~~g~~~~~~~~~~~-~-~-----~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~--~~G~~~~~i~adlVV~AdG~~  156 (379)
                      ....+      +.... . .     .......++++++++ |++++.+++.+++.+.  .++.+   +.+|.||.|+|..
T Consensus        72 ~~~~~------~~~~~~~~~~~~~~~~~~~~~gv~i~~~~-v~~i~~~~~~~~v~~~~~~~~~~---~~~d~vvlAtG~~  141 (338)
T 3itj_A           72 ENFPG------FPDGLTGSELMDRMREQSTKFGTEIITET-VSKVDLSSKPFKLWTEFNEDAEP---VTTDAIILATGAS  141 (338)
T ss_dssp             CCSTT------CTTCEEHHHHHHHHHHHHHHTTCEEECSC-EEEEECSSSSEEEEETTCSSSCC---EEEEEEEECCCEE
T ss_pred             cccCC------CcccCCHHHHHHHHHHHHHHcCCEEEEeE-EEEEEEcCCEEEEEEEecCCCcE---EEeCEEEECcCCC
Confidence            00000      00000 0 0     222333589999998 9999998888888773  15555   8999999999987


Q ss_pred             hH
Q psy9141         157 SG  158 (379)
Q Consensus       157 S~  158 (379)
                      +.
T Consensus       142 ~~  143 (338)
T 3itj_A          142 AK  143 (338)
T ss_dssp             EC
T ss_pred             cC
Confidence            64

>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei}

Probab=98.94  E-value=6.3e-09  Score=101.35  Aligned_cols=47  Identities=15%  Similarity=0.193  Sum_probs=39.4

Q ss_pred             CCCCeEEeCceEEEEEecCCeEE-EEEccCCceeEEEeecEEEecCCCChHHH
Q psy9141         109 YPDCNIYFQHKLINLDVNSGNVT-FYRTEDNSETKITDNQLIIGADGAYSGVR  160 (379)
Q Consensus       109 ~~gv~i~~~~~v~~i~~~~~~v~-v~~~~~G~~~~~i~adlVV~AdG~~S~vr  160 (379)
                      ..|++|+++++|++|+.++++++ +++  +|++   ++||.||.|.|.+...+
T Consensus       208 ~~G~~i~~~~~V~~i~~~~~~~~gv~~--~g~~---~~ad~VV~a~~~~~~~~  255 (425)
T 3ka7_A          208 ANGGKIHTGQEVSKILIENGKAAGIIA--DDRI---HDADLVISNLGHAATAV  255 (425)
T ss_dssp             HTTCEEECSCCEEEEEEETTEEEEEEE--TTEE---EECSEEEECSCHHHHHH
T ss_pred             HcCCEEEECCceeEEEEECCEEEEEEE--CCEE---EECCEEEECCCHHHHHH
Confidence            35899999999999999888887 554  5666   99999999999987653

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}

Probab=98.94  E-value=2e-09  Score=107.24  Aligned_cols=48  Identities=8%  Similarity=0.095  Sum_probs=42.2

Q ss_pred             CCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEEEecCCCChHHH
Q psy9141         109 YPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAYSGVR  160 (379)
Q Consensus       109 ~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlVV~AdG~~S~vr  160 (379)
                      ..|++++.+++|++++.+++++.+.+. +|++   +++|.||.|.|..+.+.
T Consensus       244 ~~Gv~i~~~~~V~~i~~~~~~v~v~~~-~g~~---i~aD~Vi~A~G~~p~~~  291 (484)
T 3o0h_A          244 AKGISIIYEATVSQVQSTENCYNVVLT-NGQT---ICADRVMLATGRVPNTT  291 (484)
T ss_dssp             HHTCEEESSCCEEEEEECSSSEEEEET-TSCE---EEESEEEECCCEEECCT
T ss_pred             HCCCEEEeCCEEEEEEeeCCEEEEEEC-CCcE---EEcCEEEEeeCCCcCCC
Confidence            358999999999999998888888888 8876   99999999999987654

>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A*

Probab=98.93  E-value=2.3e-09  Score=113.69  Aligned_cols=47  Identities=11%  Similarity=0.223  Sum_probs=39.2

Q ss_pred             cCCCCeEEeCceEEEEEecCCeEE-EEEccCCceeEEEeecEEEecCCCChHH
Q psy9141         108 QYPDCNIYFQHKLINLDVNSGNVT-FYRTEDNSETKITDNQLIIGADGAYSGV  159 (379)
Q Consensus       108 ~~~gv~i~~~~~v~~i~~~~~~v~-v~~~~~G~~~~~i~adlVV~AdG~~S~v  159 (379)
                      +..|++|+.+++|++++.+++++. +.+. +| +   ++||.||.|+|.+|..
T Consensus       162 ~~~Gv~i~~~t~V~~i~~~~~~v~~V~t~-~G-~---i~Ad~VV~AaG~~s~~  209 (830)
T 1pj5_A          162 ESAGVTYRGSTTVTGIEQSGGRVTGVQTA-DG-V---IPADIVVSCAGFWGAK  209 (830)
T ss_dssp             HHTTCEEECSCCEEEEEEETTEEEEEEET-TE-E---EECSEEEECCGGGHHH
T ss_pred             HHcCCEEECCceEEEEEEeCCEEEEEEEC-Cc-E---EECCEEEECCccchHH
Confidence            346899999999999998888764 6666 66 4   9999999999999953

>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}

Probab=98.93  E-value=7.7e-10  Score=99.18  Aligned_cols=36  Identities=19%  Similarity=0.378  Sum_probs=34.1

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCC
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIR   42 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~   42 (379)
                      +||+||||||+||++|+.|+++|++|+||||++.+.
T Consensus         3 ~dV~IIGaGpaGL~aA~~La~~G~~V~v~Ek~~~~G   38 (336)
T 3kkj_A            3 VPIAIIGTGIAGLSAAQALTAAGHQVHLFDKSRGSG   38 (336)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSC
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCC
Confidence            799999999999999999999999999999998664

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*

Probab=98.93  E-value=5.8e-10  Score=112.72  Aligned_cols=131  Identities=15%  Similarity=0.160  Sum_probs=77.2

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCC---CCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCc
Q psy9141           4 NSKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNS---GLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPM   80 (379)
Q Consensus         4 m~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~---~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~   80 (379)
                      +.++||+|||||++|+++|..|++.|++|+|||+.+.....   ....|...  -.........        +...  +.
T Consensus         7 ~~~~dVvIIGaG~aGl~aA~~L~~~g~~v~iiE~~~~~GGtw~~~~yPg~~~--d~~~~~y~~~--------f~~~--~~   74 (545)
T 3uox_A            7 SPALDAVVIGAGVTGIYQAFLINQAGMKVLGIEAGEDVGGTWYWNRYPGCRL--DTESYAYGYF--------ALKG--II   74 (545)
T ss_dssp             CCSEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHCCCTTCBC--SSCHHHHCHH--------HHTT--SS
T ss_pred             CCCCCEEEECccHHHHHHHHHHHhCCCCEEEEeCCCCCCCccccCCCCceee--cCchhhcccc--------cCcc--cc
Confidence            45689999999999999999999999999999998755311   00001000  0000000000        0000  00


Q ss_pred             eeeEEEecCCcEEEeeCCCCCcH------HHHhcCCCC--eEEeCceEEEEEecC--CeEEEEEccCCceeEEEeecEEE
Q psy9141          81 RARMIHGQNGKLREIPYDPVHNQ------VELEQYPDC--NIYFQHKLINLDVNS--GNVTFYRTEDNSETKITDNQLII  150 (379)
Q Consensus        81 ~~~~~~~~~g~~~~~~~~~~~~~------~~~~~~~gv--~i~~~~~v~~i~~~~--~~v~v~~~~~G~~~~~i~adlVV  150 (379)
                      ...   ....     .+  ....      ....+..++  .++++++|++++.++  +.|+|++. +|++   ++||+||
T Consensus        75 ~~~---~~~~-----~~--~~~~ei~~yl~~~~~~~~l~~~i~~~~~V~~~~~~~~~~~w~V~~~-~G~~---~~ad~lV  140 (545)
T 3uox_A           75 PEW---EWSE-----NF--ASQPEMLRYVNRAADAMDVRKHYRFNTRVTAARYVENDRLWEVTLD-NEEV---VTCRFLI  140 (545)
T ss_dssp             TTC---CCSB-----SS--CBHHHHHHHHHHHHHHHTCGGGEECSCCEEEEEEEGGGTEEEEEET-TTEE---EEEEEEE
T ss_pred             cCC---Cccc-----cC--CCHHHHHHHHHHHHHHcCCcCcEEECCEEEEEEEeCCCCEEEEEEC-CCCE---EEeCEEE
Confidence            000   0000     00  0010      222222344  789999999998765  47889998 8987   9999999


Q ss_pred             ecCCCChHHH
Q psy9141         151 GADGAYSGVR  160 (379)
Q Consensus       151 ~AdG~~S~vr  160 (379)
                      .|+|.+|.-+
T Consensus       141 ~AtG~~s~p~  150 (545)
T 3uox_A          141 SATGPLSASR  150 (545)
T ss_dssp             ECCCSCBC--
T ss_pred             ECcCCCCCCc
Confidence            9999877433

>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum}

Probab=98.93  E-value=3.9e-09  Score=104.57  Aligned_cols=70  Identities=30%  Similarity=0.391  Sum_probs=50.5

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHhCC--CcEEEEccCCCCCCC---CCCCC------cccccccCHHHHHHHHHCCChHH
Q psy9141           4 NSKKSVVIVGGGLVGSLSACMFAKNQ--YEVNLYEAREDIRNS---GLSEG------KSINLALSVRGREALRRIGLEDK   72 (379)
Q Consensus         4 m~~~dVvIVGaGpaGl~~A~~La~~G--~~V~viE~~~~~~~~---~~~~g------~~i~~al~~~~~~~l~~lGl~~~   72 (379)
                      |+.+||+|||||++||++|+.|++.|  ++|+|+|+++.....   ....|      ........+...++++++|+...
T Consensus         2 m~~~~v~IiGaG~~Gl~~A~~L~~~g~~~~v~v~E~~~~~GG~~~~~~~~g~~~~~g~~~~~~~~~~~~~l~~~lg~~~~   81 (475)
T 3lov_A            2 MSSKRLVIVGGGITGLAAAYYAERAFPDLNITLLEAGERLGGKVATYREDGFTIERGPDSYVARKHILTDLIEAIGLGEK   81 (475)
T ss_dssp             CCSCEEEEECCBHHHHHHHHHHHHHCTTSEEEEECSSSSSBTTCCEECSTTCCEESSCCCEETTSTHHHHHHHHTTCGGG
T ss_pred             CCcccEEEECCCHHHHHHHHHHHHhCCCCCEEEEECCCCCCceeEEEeeCCEEEecCchhhhcccHHHHHHHHHcCCcce
Confidence            44689999999999999999999999  999999998754321   01111      11111245678899999998654


Q ss_pred             H
Q psy9141          73 L   73 (379)
Q Consensus        73 l   73 (379)
                      +
T Consensus        82 ~   82 (475)
T 3lov_A           82 L   82 (475)
T ss_dssp             E
T ss_pred             E
Confidence            3

>4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*

Probab=98.92  E-value=1.1e-09  Score=109.43  Aligned_cols=38  Identities=16%  Similarity=0.210  Sum_probs=34.6

Q ss_pred             CCcEEEECCChHHHHHHHHHHh-CCCcEEEEccCCCCCC
Q psy9141           6 KKSVVIVGGGLVGSLSACMFAK-NQYEVNLYEAREDIRN   43 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La~-~G~~V~viE~~~~~~~   43 (379)
                      ++||+|||||++||++|+.|++ .|++|+|+|+++.++.
T Consensus        10 ~~DVvIIGaGisGLsaA~~L~k~~G~~V~VlE~~~~~GG   48 (513)
T 4gde_A           10 SVDVLVIGAGPTGLGAAKRLNQIDGPSWMIVDSNETPGG   48 (513)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHCCSCEEEEESSSSCCG
T ss_pred             CCCEEEECCcHHHHHHHHHHHhhCCCCEEEEECCCCCcC
Confidence            4799999999999999999998 5999999999987753

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*

Probab=98.92  E-value=2.9e-09  Score=107.68  Aligned_cols=129  Identities=16%  Similarity=0.189  Sum_probs=77.0

Q ss_pred             CCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeE
Q psy9141           5 SKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARM   84 (379)
Q Consensus         5 ~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~   84 (379)
                      .++||+|||||++|+++|..|++.|++|+|||+.+.....       .         ......|+...+......   ..
T Consensus        20 ~~~dVvIIGaG~aGl~aA~~L~~~G~~v~iiE~~~~~GGt-------w---------~~~~ypg~~~dv~s~~y~---~~   80 (549)
T 4ap3_A           20 TSYDVVVVGAGIAGLYAIHRFRSQGLTVRAFEAASGVGGV-------W---------YWNRYPGARCDVESIDYS---YS   80 (549)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTH-------H---------HHCCCTTCBCSSCTTTSS---CC
T ss_pred             CCCCEEEECchHHHHHHHHHHHhCCCCEEEEeCCCCCCCc-------c---------ccCCCCCceeCCCchhcc---cc
Confidence            3579999999999999999999999999999998754311       0         000000110000000000   00


Q ss_pred             EEecCCcEEEeeCC--CCCcH------HHHhcCCCC--eEEeCceEEEEEecCC--eEEEEEccCCceeEEEeecEEEec
Q psy9141          85 IHGQNGKLREIPYD--PVHNQ------VELEQYPDC--NIYFQHKLINLDVNSG--NVTFYRTEDNSETKITDNQLIIGA  152 (379)
Q Consensus        85 ~~~~~g~~~~~~~~--~~~~~------~~~~~~~gv--~i~~~~~v~~i~~~~~--~v~v~~~~~G~~~~~i~adlVV~A  152 (379)
                      +..  .......+.  .....      ....+..++  .++++++|++++.+++  .++|++. +|++   ++||+||.|
T Consensus        81 f~~--~~~~~~~~~~~~~~~~ei~~yl~~~~~~~g~~~~i~~~~~V~~i~~~~~~~~w~V~~~-~G~~---i~ad~lV~A  154 (549)
T 4ap3_A           81 FSP--ELEQEWNWSEKYATQPEILAYLEHVADRFDLRRDIRFDTRVTSAVLDEEGLRWTVRTD-RGDE---VSARFLVVA  154 (549)
T ss_dssp             SCH--HHHHHCCCSSSSCBHHHHHHHHHHHHHHTTCGGGEECSCCEEEEEEETTTTEEEEEET-TCCE---EEEEEEEEC
T ss_pred             ccc--ccccCCCCccCCCCHHHHHHHHHHHHHHcCCCccEEECCEEEEEEEcCCCCEEEEEEC-CCCE---EEeCEEEEC
Confidence            000  000000000  00011      222333455  7999999999987765  7889998 8987   999999999


Q ss_pred             CCCChH
Q psy9141         153 DGAYSG  158 (379)
Q Consensus       153 dG~~S~  158 (379)
                      +|.+|.
T Consensus       155 tG~~s~  160 (549)
T 4ap3_A          155 AGPLSN  160 (549)
T ss_dssp             CCSEEE
T ss_pred             cCCCCC
Confidence            997763

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*

Probab=98.91  E-value=7.6e-10  Score=109.61  Aligned_cols=136  Identities=15%  Similarity=0.126  Sum_probs=82.2

Q ss_pred             CCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeE
Q psy9141           5 SKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARM   84 (379)
Q Consensus         5 ~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~   84 (379)
                      +++||+||||||+|+++|..|++.|++|+|||+.. ..      |...+.. ...+..++...++++.+...... .++.
T Consensus         2 ~~~dvvIIGaG~aGl~aA~~l~~~G~~V~liE~~~-~g------G~~~~~g-~~psk~ll~~~~~~~~~~~~~~~-~g~~   72 (464)
T 2a8x_A            2 THYDVVVLGAGPGGYVAAIRAAQLGLSTAIVEPKY-WG------GVCLNVG-CIPSKALLRNAELVHIFTKDAKA-FGIS   72 (464)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSC-TT------HHHHHHS-HHHHHHHHHHHHHHHHHHHHTTT-TTEE
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCC-CC------CcccccC-chhhHHHHHHHHHHHHHHHHHHh-cCCC
Confidence            35899999999999999999999999999999972 21      2111000 02344555555555555411111 1111


Q ss_pred             EEecCCcEEEeeCCCCCc----------H--HHHhcCCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEEEec
Q psy9141          85 IHGQNGKLREIPYDPVHN----------Q--VELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGA  152 (379)
Q Consensus        85 ~~~~~g~~~~~~~~~~~~----------~--~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlVV~A  152 (379)
                        . ..   ..++.....          +  ....+..+++++.++.+.   .+++.+++.+. +|+..+ +++|.||.|
T Consensus        73 --~-~~---~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~~~~g~~~~---id~~~v~V~~~-~G~~~~-~~~d~lViA  141 (464)
T 2a8x_A           73 --G-EV---TFDYGIAYDRSRKVAEGRVAGVHFLMKKNKITEIHGYGTF---ADANTLLVDLN-DGGTES-VTFDNAIIA  141 (464)
T ss_dssp             --E-CC---EECHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECEEEEE---SSSSEEEEEET-TSCCEE-EEEEEEEEC
T ss_pred             --C-CC---ccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEE---ecCCeEEEEeC-CCceEE-EEcCEEEEC
Confidence              1 11   111110000          0  122233689999887653   45677888887 783223 999999999


Q ss_pred             CCCChHHH
Q psy9141         153 DGAYSGVR  160 (379)
Q Consensus       153 dG~~S~vr  160 (379)
                      +|..+...
T Consensus       142 tG~~~~~~  149 (464)
T 2a8x_A          142 TGSSTRLV  149 (464)
T ss_dssp             CCEEECCC
T ss_pred             CCCCCCCC
Confidence            99987543

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}

Probab=98.91  E-value=6.9e-09  Score=103.48  Aligned_cols=51  Identities=10%  Similarity=0.079  Sum_probs=40.4

Q ss_pred             cCCCCeEEeCceEEEEEecCCeEEEEEcc--CCceeEEEeecEEEecCCCChHH
Q psy9141         108 QYPDCNIYFQHKLINLDVNSGNVTFYRTE--DNSETKITDNQLIIGADGAYSGV  159 (379)
Q Consensus       108 ~~~gv~i~~~~~v~~i~~~~~~v~v~~~~--~G~~~~~i~adlVV~AdG~~S~v  159 (379)
                      +..|++++.+++|++++.+++++.+.+.+  +|+..+ +++|.||.|.|....+
T Consensus       250 ~~~gV~v~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~-i~~D~Vi~a~G~~p~~  302 (491)
T 3urh_A          250 TKQGIDFKLGAKVTGAVKSGDGAKVTFEPVKGGEATT-LDAEVVLIATGRKPST  302 (491)
T ss_dssp             HHTTCEEECSEEEEEEEEETTEEEEEEEETTSCCCEE-EEESEEEECCCCEECC
T ss_pred             HhCCCEEEECCeEEEEEEeCCEEEEEEEecCCCceEE-EEcCEEEEeeCCccCC
Confidence            34699999999999999988887777651  264334 9999999999998654

>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus}

Probab=98.91  E-value=6.7e-09  Score=101.25  Aligned_cols=47  Identities=17%  Similarity=0.311  Sum_probs=39.6

Q ss_pred             cCCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEEEecCCCChHHH
Q psy9141         108 QYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAYSGVR  160 (379)
Q Consensus       108 ~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlVV~AdG~~S~vr  160 (379)
                      +..|++|+++++|++|+.+++++ + .. +|++   ++||.||.|.|.+...+
T Consensus       200 ~~~G~~i~~~~~V~~i~~~~~~v-V-~~-~g~~---~~ad~Vv~a~~~~~~~~  246 (421)
T 3nrn_A          200 MENKGKILTRKEVVEINIEEKKV-Y-TR-DNEE---YSFDVAISNVGVRETVK  246 (421)
T ss_dssp             HTTTCEEESSCCEEEEETTTTEE-E-ET-TCCE---EECSEEEECSCHHHHHH
T ss_pred             HHCCCEEEcCCeEEEEEEECCEE-E-Ee-CCcE---EEeCEEEECCCHHHHHH
Confidence            44689999999999999988888 5 45 7776   99999999999987553

>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*

Probab=98.90  E-value=3.4e-09  Score=107.07  Aligned_cols=129  Identities=13%  Similarity=0.153  Sum_probs=76.5

Q ss_pred             CCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCC---CCCCcccccccCHHHHHHHHHCCChHHHHhCCCCce
Q psy9141           5 SKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSG---LSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMR   81 (379)
Q Consensus         5 ~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~---~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~   81 (379)
                      .++||+|||||++|+++|+.|++.|++|+|||+.+......   ...+...    ...+  .+..+...+.+...     
T Consensus        15 ~~~dVvIIGaG~aGl~aA~~L~~~G~~v~iiE~~~~~GG~w~~~~~pg~~~----d~~~--~~~~~~f~~~~~~~-----   83 (542)
T 1w4x_A           15 EEVDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWYWNRYPGARC----DIES--IEYCYSFSEEVLQE-----   83 (542)
T ss_dssp             SEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHCCCTTCBC----SSCT--TTSSCCSCHHHHHH-----
T ss_pred             CCCCEEEECccHHHHHHHHHHHhCCCCEEEEeCCCCCCCcccccCCCceee----cccc--cccccccChhhhhc-----
Confidence            35799999999999999999999999999999987553110   0000000    0000  00000000000000     


Q ss_pred             eeEEEecCCcEEEeeCCCCCcH------HH-HhcC-CCCeEEeCceEEEEEecCC--eEEEEEccCCceeEEEeecEEEe
Q psy9141          82 ARMIHGQNGKLREIPYDPVHNQ------VE-LEQY-PDCNIYFQHKLINLDVNSG--NVTFYRTEDNSETKITDNQLIIG  151 (379)
Q Consensus        82 ~~~~~~~~g~~~~~~~~~~~~~------~~-~~~~-~gv~i~~~~~v~~i~~~~~--~v~v~~~~~G~~~~~i~adlVV~  151 (379)
                       .   ...       .......      .. ..+. .+.+++++++|++++.+++  .++|++. +|++   ++||+||.
T Consensus        84 -~---~~~-------~~~~~~~~i~~yl~~~~~~~~l~~~i~~~~~V~~~~~~~~~~~w~V~~~-~G~~---~~ad~vV~  148 (542)
T 1w4x_A           84 -W---NWT-------ERYASQPEILRYINFVADKFDLRSGITFHTTVTAAAFDEATNTWTVDTN-HGDR---IRARYLIM  148 (542)
T ss_dssp             -C---CCC-------BSSCBHHHHHHHHHHHHHHTTGGGGEECSCCEEEEEEETTTTEEEEEET-TCCE---EEEEEEEE
T ss_pred             -c---Ccc-------cccCCHHHHHHHHHHHHHHcCCCceEEcCcEEEEEEEcCCCCeEEEEEC-CCCE---EEeCEEEE
Confidence             0   000       0001011      11 1221 2467999999999987653  7889888 8876   99999999


Q ss_pred             cCCCChHH
Q psy9141         152 ADGAYSGV  159 (379)
Q Consensus       152 AdG~~S~v  159 (379)
                      |+|.+|.-
T Consensus       149 AtG~~s~p  156 (542)
T 1w4x_A          149 ASGQLSVP  156 (542)
T ss_dssp             CCCSCCCC
T ss_pred             CcCCCCCC
Confidence            99998743

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5

Probab=98.90  E-value=6.4e-09  Score=96.77  Aligned_cols=112  Identities=17%  Similarity=0.128  Sum_probs=72.7

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeEE
Q psy9141           6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARMI   85 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~~   85 (379)
                      ++||+||||||+|+++|..|++.|++|+|+|+..  .      |...    .        ..++                
T Consensus         1 ~~dvvIIG~G~aGl~aA~~l~~~g~~v~li~~~~--g------G~~~----~--------~~~~----------------   44 (310)
T 1fl2_A            1 AYDVLIVGSGPAGAAAAIYSARKGIRTGLMGERF--G------GQIL----D--------TVDI----------------   44 (310)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTTTCCEEEECSST--T------GGGG----G--------CCEE----------------
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC--C------ceec----c--------cccc----------------
Confidence            3799999999999999999999999999998531  1      2110    0        0000                


Q ss_pred             EecCCcEEEeeCCCCCcH-HHHhcCCCCeEEeCceEEEEEecC---CeEEEEEccCCceeEEEeecEEEecCCCChH
Q psy9141          86 HGQNGKLREIPYDPVHNQ-VELEQYPDCNIYFQHKLINLDVNS---GNVTFYRTEDNSETKITDNQLIIGADGAYSG  158 (379)
Q Consensus        86 ~~~~g~~~~~~~~~~~~~-~~~~~~~gv~i~~~~~v~~i~~~~---~~v~v~~~~~G~~~~~i~adlVV~AdG~~S~  158 (379)
                      ....+... ......... ....+..+++++.+++|+.++.+.   +.+.+.+. +|++   +++|.||.|+|.++.
T Consensus        45 ~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~~~~~~v~~~-~g~~---~~~~~lv~AtG~~~~  116 (310)
T 1fl2_A           45 ENYISVPK-TEGQKLAGALKVHVDEYDVDVIDSQSASKLIPAAVEGGLHQIETA-SGAV---LKARSIIVATGAKWR  116 (310)
T ss_dssp             CCBTTBSS-EEHHHHHHHHHHHHHTSCEEEECSCCEEEEECCSSTTCCEEEEET-TSCE---EEEEEEEECCCEEEC
T ss_pred             ccccCcCC-CCHHHHHHHHHHHHHHcCCeEEccCEEEEEEecccCCceEEEEEC-CCCE---EEeCEEEECcCCCcC
Confidence            00000000 000000000 223344689999999999997653   36888888 8876   999999999998764

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=98.89  E-value=2e-09  Score=101.34  Aligned_cols=120  Identities=16%  Similarity=0.168  Sum_probs=72.9

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceee
Q psy9141           4 NSKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRAR   83 (379)
Q Consensus         4 m~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~   83 (379)
                      |..+||+||||||+|+++|+.|++.|++|+|+|+......  .. |..+  ....                         
T Consensus         6 ~~~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~~~--~~-gg~~--~~~~-------------------------   55 (333)
T 1vdc_A            6 THNTRLCIVGSGPAAHTAAIYAARAELKPLLFEGWMANDI--AP-GGQL--TTTT-------------------------   55 (333)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTB--CT-TCGG--GGCS-------------------------
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHCCCeEEEEeccCcccc--CC-Ccee--eecc-------------------------
Confidence            3468999999999999999999999999999998311100  00 1111  0000                         


Q ss_pred             EEEecCCcEEEeeCCCCCcH-HHHhcCCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEEEecCCCChHH
Q psy9141          84 MIHGQNGKLREIPYDPVHNQ-VELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAYSGV  159 (379)
Q Consensus        84 ~~~~~~g~~~~~~~~~~~~~-~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlVV~AdG~~S~v  159 (379)
                      ......+....+........ .......+++++.++ |++++.+++.+++++  +|.+   +++|.||.|+|.++..
T Consensus        56 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~~~-v~~i~~~~~~~~v~~--~~~~---~~~~~vv~A~G~~~~~  126 (333)
T 1vdc_A           56 DVENFPGFPEGILGVELTDKFRKQSERFGTTIFTET-VTKVDFSSKPFKLFT--DSKA---ILADAVILAIGAVAKR  126 (333)
T ss_dssp             EECCSTTCTTCEEHHHHHHHHHHHHHHTTCEEECCC-CCEEECSSSSEEEEC--SSEE---EEEEEEEECCCEEECC
T ss_pred             ccccCCCCccCCCHHHHHHHHHHHHHHCCCEEEEeE-EEEEEEcCCEEEEEE--CCcE---EEcCEEEECCCCCcCC
Confidence            00000000000000000000 222333589999987 999988877777765  5665   9999999999998753

>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*

Probab=98.89  E-value=2.5e-09  Score=99.72  Aligned_cols=120  Identities=18%  Similarity=0.215  Sum_probs=70.0

Q ss_pred             CCCCCCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCc
Q psy9141           1 MKCNSKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPM   80 (379)
Q Consensus         1 M~~m~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~   80 (379)
                      |++  .|||+||||||||+++|+.|++.|++|+|+|+.......  ..|.     +...                     
T Consensus         1 M~~--~yDvvIIG~GpAGl~AA~~la~~g~~v~liE~~~~gg~~--~~G~-----~~~~---------------------   50 (314)
T 4a5l_A            1 MSN--IHDVVIIGSGPAAHTAAIYLGRSSLKPVMYEGFMAGGVA--AGGQ-----LTTT---------------------   50 (314)
T ss_dssp             -CC--CEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSGGGCC--TTCG-----GGGS---------------------
T ss_pred             CCC--CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcc--cCCC-----cCCh---------------------
Confidence            654  389999999999999999999999999999987532211  0111     1000                     


Q ss_pred             eeeEEEecCCcEEEeeCCCCCcH-HHHhcCCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEEEecCCCCh
Q psy9141          81 RARMIHGQNGKLREIPYDPVHNQ-VELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAYS  157 (379)
Q Consensus        81 ~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlVV~AdG~~S  157 (379)
                        ..+++..+-...........+ .......++++.. ..+.....+.+...+.+. ++.+   +++|.||.|+|...
T Consensus        51 --~~i~~~~g~~~~i~~~~l~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~-~~~~---~~~~~liiATG~~~  121 (314)
T 4a5l_A           51 --TIIENFPGFPNGIDGNELMMNMRTQSEKYGTTIIT-ETIDHVDFSTQPFKLFTE-EGKE---VLTKSVIIATGATA  121 (314)
T ss_dssp             --SEECCSTTCTTCEEHHHHHHHHHHHHHHTTCEEEC-CCEEEEECSSSSEEEEET-TCCE---EEEEEEEECCCEEE
T ss_pred             --HHhhhccCCcccCCHHHHHHHHHHHHhhcCcEEEE-eEEEEeecCCCceEEEEC-CCeE---EEEeEEEEcccccc
Confidence              001110000000000000000 1222334666654 456666666666777777 7777   99999999999754

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*

Probab=98.88  E-value=3e-09  Score=99.44  Aligned_cols=110  Identities=23%  Similarity=0.317  Sum_probs=72.6

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceee
Q psy9141           4 NSKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRAR   83 (379)
Q Consensus         4 m~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~   83 (379)
                      |+.+||+||||||+|+++|+.|++.|++|+|+|+.. +       |..+  ....             .+  ...+    
T Consensus         3 ~~~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~-~-------gg~~--~~~~-------------~~--~~~~----   53 (320)
T 1trb_A            3 TKHSKLLILGSGPAGYTAAVYAARANLQPVLITGME-K-------GGQL--TTTT-------------EV--ENWP----   53 (320)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHHTTTCCCEEECCSS-T-------TGGG--GGCS-------------BC--CCST----
T ss_pred             CCcCCEEEECcCHHHHHHHHHHHHCCCcEEEEccCC-C-------CceE--ecch-------------hh--hhCC----
Confidence            456899999999999999999999999999999642 1       1111  0000             00  0000    


Q ss_pred             EEEecCCcEEEeeCCCCCcH-----HHHhcCCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEEEecCCCChH
Q psy9141          84 MIHGQNGKLREIPYDPVHNQ-----VELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAYSG  158 (379)
Q Consensus        84 ~~~~~~g~~~~~~~~~~~~~-----~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlVV~AdG~~S~  158 (379)
                            +    ++.......     .......+++++.++ +++++.+++.+++ +. +|.+   +.+|.||.|+|..+.
T Consensus        54 ------~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~i~~~~~~~~v-~~-~~~~---~~~~~lv~AtG~~~~  117 (320)
T 1trb_A           54 ------G----DPNDLTGPLLMERMHEHATKFETEIIFDH-INKVDLQNRPFRL-NG-DNGE---YTCDALIIATGASAR  117 (320)
T ss_dssp             ------T----CCSSCBHHHHHHHHHHHHHHTTCEEECCC-EEEEECSSSSEEE-EE-SSCE---EEEEEEEECCCEEEC
T ss_pred             ------C----CCCCCCHHHHHHHHHHHHHHCCCEEEEee-eeEEEecCCEEEE-Ee-CCCE---EEcCEEEECCCCCcC
Confidence                  0    000000000     222333589999886 9999888888887 66 7776   999999999998764

>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*

Probab=98.88  E-value=8e-09  Score=100.85  Aligned_cols=44  Identities=18%  Similarity=0.111  Sum_probs=38.3

Q ss_pred             cCCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEEEecCCCC
Q psy9141         108 QYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAY  156 (379)
Q Consensus       108 ~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlVV~AdG~~  156 (379)
                      +..+ +|+++++|++|+.++++++|++. +|++   ++||.||.|.|..
T Consensus       215 ~~~g-~i~~~~~V~~i~~~~~~v~v~~~-~g~~---~~ad~vi~a~~~~  258 (431)
T 3k7m_X          215 QEIP-EIRLQTVVTGIDQSGDVVNVTVK-DGHA---FQAHSVIVATPMN  258 (431)
T ss_dssp             TTCS-CEESSCCEEEEECSSSSEEEEET-TSCC---EEEEEEEECSCGG
T ss_pred             hhCC-ceEeCCEEEEEEEcCCeEEEEEC-CCCE---EEeCEEEEecCcc
Confidence            3345 99999999999998889999998 8887   9999999999943

>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A*

Probab=98.86  E-value=3e-08  Score=96.57  Aligned_cols=42  Identities=14%  Similarity=0.344  Sum_probs=36.7

Q ss_pred             CCCCCCCcEEEECCChHHHHHHHHHHhCC-CcEEEEccCCCCC
Q psy9141           1 MKCNSKKSVVIVGGGLVGSLSACMFAKNQ-YEVNLYEAREDIR   42 (379)
Q Consensus         1 M~~m~~~dVvIVGaGpaGl~~A~~La~~G-~~V~viE~~~~~~   42 (379)
                      |+.++++||+|||||++||++|+.|++.| ++|+|+|+++.+.
T Consensus         1 M~~~~~~~v~IIGaG~aGl~aA~~L~~~g~~~v~v~E~~~~~G   43 (424)
T 2b9w_A            1 MSISKDSRIAIIGAGPAGLAAGMYLEQAGFHDYTILERTDHVG   43 (424)
T ss_dssp             -CCCTTCCEEEECCSHHHHHHHHHHHHTTCCCEEEECSSSCSS
T ss_pred             CCCCCCCCEEEECcCHHHHHHHHHHHhCCCCcEEEEECCCCCC
Confidence            65456789999999999999999999999 9999999987653

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*

Probab=98.85  E-value=6e-09  Score=103.25  Aligned_cols=147  Identities=12%  Similarity=0.132  Sum_probs=76.3

Q ss_pred             CcEEEECCChHHHHHHHHHHh---CCCc---EEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCc
Q psy9141           7 KSVVIVGGGLVGSLSACMFAK---NQYE---VNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPM   80 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~---~G~~---V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~   80 (379)
                      +||+||||||+|+++|..|++   .|++   |+|||+.+............   ...+.+...  ...+++.+... .+-
T Consensus         3 ~~V~IIGaG~aGl~aA~~L~~~~~~G~~~~~V~v~E~~~~~GG~w~~~~~~---g~~~~g~~~--~~~~y~~l~~~-~~~   76 (464)
T 2xve_A            3 TRIAILGAGPSGMAQLRAFQSAQEKGAEIPELVCFEKQADWGGQWNYTWRT---GLDENGEPV--HSSMYRYLWSN-GPK   76 (464)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHHHTTCCCCEEEEECSSSSSCGGGSCCSCC---SBCTTSSBC--CCCCCTTCBCS-SCG
T ss_pred             CcEEEECccHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCCEeecCCCC---CccccCCCC--cCccccchhhc-CCh
Confidence            599999999999999999999   9999   99999987653221110000   000000000  00001000000 000


Q ss_pred             eeeEEEecC--CcEEEeeCCCCCcH------HHHhcCCCCe--EEeCceEEEEEecCC--eEEEEEcc--CCceeEEEee
Q psy9141          81 RARMIHGQN--GKLREIPYDPVHNQ------VELEQYPDCN--IYFQHKLINLDVNSG--NVTFYRTE--DNSETKITDN  146 (379)
Q Consensus        81 ~~~~~~~~~--g~~~~~~~~~~~~~------~~~~~~~gv~--i~~~~~v~~i~~~~~--~v~v~~~~--~G~~~~~i~a  146 (379)
                      ..+.+.+..  ..............      ....+..+++  ++++++|++++.+++  .++|++.+  +|+..+ +.+
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~~~i~~~~~V~~v~~~~~~~~~~V~~~~~~~g~~~~-~~~  155 (464)
T 2xve_A           77 ECLEFADYTFDEHFGKPIASYPPREVLWDYIKGRVEKAGVRKYIRFNTAVRHVEFNEDSQTFTVTVQDHTTDTIYS-EEF  155 (464)
T ss_dssp             GGTCBTTBCHHHHHSSCCCSSCBHHHHHHHHHHHHHHHTCGGGEECSEEEEEEEEETTTTEEEEEEEETTTTEEEE-EEE
T ss_pred             hhcccCCCCCCcccCCCCCCCCCHHHHHHHHHHHHHHcCCcceEEeCCEEEEEEEcCCCCcEEEEEEEcCCCceEE-EEc
Confidence            000000000  00000000011111      1222223676  999999999998766  77777651  254344 899


Q ss_pred             cEEEecCCCChHHH
Q psy9141         147 QLIIGADGAYSGVR  160 (379)
Q Consensus       147 dlVV~AdG~~S~vr  160 (379)
                      |.||.|+|.+|.-+
T Consensus       156 d~VVvAtG~~s~p~  169 (464)
T 2xve_A          156 DYVVCCTGHFSTPY  169 (464)
T ss_dssp             SEEEECCCSSSSBC
T ss_pred             CEEEECCCCCCCCc
Confidence            99999999877543

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}

Probab=98.84  E-value=1.3e-08  Score=95.34  Aligned_cols=111  Identities=14%  Similarity=0.115  Sum_probs=71.0

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeEE
Q psy9141           6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARMI   85 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~~   85 (379)
                      ++||+||||||+|+++|+.|++.|++|+|+|+.. ..      |...   ...         .+      ...+  ..  
T Consensus        16 ~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~-~g------g~~~---~~~---------~~------~~~~--~~--   66 (319)
T 3cty_A           16 DFDVVIVGAGAAGFSAAVYAARSGFSVAILDKAV-AG------GLTA---EAP---------LV------ENYL--GF--   66 (319)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSS-TT------GGGG---GCS---------CB------CCBT--TB--
T ss_pred             CCcEEEECcCHHHHHHHHHHHhCCCcEEEEeCCC-CC------cccc---ccc---------hh------hhcC--CC--
Confidence            5899999999999999999999999999999853 21      2110   000         00      0000  00  


Q ss_pred             EecCCcEEEeeCCCCCcH-HHHhcCCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEEEecCCCChH
Q psy9141          86 HGQNGKLREIPYDPVHNQ-VELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAYSG  158 (379)
Q Consensus        86 ~~~~g~~~~~~~~~~~~~-~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlVV~AdG~~S~  158 (379)
                      ....+.       ..... .......++++++ .+|++++.+++.+++.+  +|.+   +.+|.||.|+|.++.
T Consensus        67 ~~~~~~-------~~~~~~~~~~~~~~v~~~~-~~v~~i~~~~~~~~v~~--~~~~---~~~~~li~AtG~~~~  127 (319)
T 3cty_A           67 KSIVGS-------ELAKLFADHAANYAKIREG-VEVRSIKKTQGGFDIET--NDDT---YHAKYVIITTGTTHK  127 (319)
T ss_dssp             SSBCHH-------HHHHHHHHHHHTTSEEEET-CCEEEEEEETTEEEEEE--SSSE---EEEEEEEECCCEEEC
T ss_pred             cccCHH-------HHHHHHHHHHHHcCCEEEE-eeEEEEEEeCCEEEEEE--CCCE---EEeCEEEECCCCCcc
Confidence            000000       00000 2223345889888 78999998888777765  4555   899999999998764

>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G*

Probab=98.84  E-value=2e-08  Score=100.03  Aligned_cols=45  Identities=7%  Similarity=-0.071  Sum_probs=39.4

Q ss_pred             CC-CeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEEEecCCCChH
Q psy9141         110 PD-CNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAYSG  158 (379)
Q Consensus       110 ~g-v~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlVV~AdG~~S~  158 (379)
                      .+ ++|+++++|++|+.++++++|++. +|++   ++||.||.|.|....
T Consensus       268 ~g~~~i~~~~~V~~i~~~~~~v~v~~~-~g~~---~~ad~vI~a~~~~~l  313 (495)
T 2vvm_A          268 TGRLGYVFGCPVRSVVNERDAARVTAR-DGRE---FVAKRVVCTIPLNVL  313 (495)
T ss_dssp             TTCEEEESSCCEEEEEECSSSEEEEET-TCCE---EEEEEEEECCCGGGG
T ss_pred             cCceEEEeCCEEEEEEEcCCEEEEEEC-CCCE---EEcCEEEECCCHHHH
Confidence            44 889999999999988888999888 8876   999999999997653

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*

Probab=98.83  E-value=2.6e-08  Score=98.28  Aligned_cols=37  Identities=22%  Similarity=0.223  Sum_probs=34.1

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCC-----CcEEEEccCCCCC
Q psy9141           6 KKSVVIVGGGLVGSLSACMFAKNQ-----YEVNLYEAREDIR   42 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La~~G-----~~V~viE~~~~~~   42 (379)
                      .+||+||||||+|+++|..|++.|     ++|+|||+.+...
T Consensus        30 ~~dVvIIGaG~aGl~aA~~L~~~g~~~~~~~v~liE~~~~~g   71 (463)
T 3s5w_A           30 VHDLIGVGFGPSNIALAIALQERAQAQGALEVLFLDKQGDYR   71 (463)
T ss_dssp             EESEEEECCSHHHHHHHHHHHHHHHHHCCCCEEEEESCSSCC
T ss_pred             cCCEEEECCCHHHHHHHHHHHhcccccCcccEEEEecCCCCC
Confidence            469999999999999999999999     9999999998654

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}

Probab=98.82  E-value=1.9e-08  Score=98.02  Aligned_cols=48  Identities=13%  Similarity=0.087  Sum_probs=41.0

Q ss_pred             cCCCCeEEeCceEEEEEecCCeE-EEEEccCCceeEEEeecEEEecCCCChHH
Q psy9141         108 QYPDCNIYFQHKLINLDVNSGNV-TFYRTEDNSETKITDNQLIIGADGAYSGV  159 (379)
Q Consensus       108 ~~~gv~i~~~~~v~~i~~~~~~v-~v~~~~~G~~~~~i~adlVV~AdG~~S~v  159 (379)
                      +..|++++++++|++++.+++++ .+++. +|++   ++||.||.|.|..+.+
T Consensus       205 ~~~GV~i~~~~~v~~i~~~~~~v~~v~l~-dG~~---i~aD~Vv~a~G~~p~~  253 (415)
T 3lxd_A          205 RAHGVDLRTGAAMDCIEGDGTKVTGVRMQ-DGSV---IPADIVIVGIGIVPCV  253 (415)
T ss_dssp             HHTTCEEEETCCEEEEEESSSBEEEEEES-SSCE---EECSEEEECSCCEESC
T ss_pred             HhCCCEEEECCEEEEEEecCCcEEEEEeC-CCCE---EEcCEEEECCCCccCh
Confidence            34699999999999999877666 57888 8987   9999999999998754

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}

Probab=98.82  E-value=4.9e-09  Score=98.98  Aligned_cols=109  Identities=17%  Similarity=0.268  Sum_probs=70.9

Q ss_pred             CCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeE
Q psy9141           5 SKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARM   84 (379)
Q Consensus         5 ~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~   84 (379)
                      ..+||+||||||+|+++|+.|++.|++|+|||+.. +       |..+  .....       .        ...+     
T Consensus        13 ~~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~-~-------gg~~--~~~~~-------~--------~~~~-----   62 (335)
T 2a87_A           13 PVRDVIVIGSGPAGYTAALYAARAQLAPLVFEGTS-F-------GGAL--MTTTD-------V--------ENYP-----   62 (335)
T ss_dssp             CCEEEEEECCHHHHHHHHHHHHHTTCCCEEECCSS-C-------SCGG--GSCSC-------B--------CCST-----
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhCCCeEEEEecCC-C-------CCce--eccch-------h--------hhcC-----
Confidence            46899999999999999999999999999999652 1       1111  00000       0        0000     


Q ss_pred             EEecCCcEEEeeCCCCCcH-----HHHhcCCCCeEEeCceEEEEEecCCeEEE-EEccCCceeEEEeecEEEecCCCChH
Q psy9141          85 IHGQNGKLREIPYDPVHNQ-----VELEQYPDCNIYFQHKLINLDVNSGNVTF-YRTEDNSETKITDNQLIIGADGAYSG  158 (379)
Q Consensus        85 ~~~~~g~~~~~~~~~~~~~-----~~~~~~~gv~i~~~~~v~~i~~~~~~v~v-~~~~~G~~~~~i~adlVV~AdG~~S~  158 (379)
                           +    ++.......     .......++++++++ +++++. ++.+++ .+. +|++   +++|.||.|+|..+.
T Consensus        63 -----~----~~~~~~~~~~~~~l~~~~~~~~v~~~~~~-v~~i~~-~~~~~v~~~~-~g~~---~~~d~lviAtG~~~~  127 (335)
T 2a87_A           63 -----G----FRNGITGPELMDEMREQALRFGADLRMED-VESVSL-HGPLKSVVTA-DGQT---HRARAVILAMGAAAR  127 (335)
T ss_dssp             -----T----CTTCBCHHHHHHHHHHHHHHTTCEEECCC-EEEEEC-SSSSEEEEET-TSCE---EEEEEEEECCCEEEC
T ss_pred             -----C----CCCCCCHHHHHHHHHHHHHHcCCEEEEee-EEEEEe-CCcEEEEEeC-CCCE---EEeCEEEECCCCCcc
Confidence                 0    000000000     122233589999987 888887 555667 677 7876   999999999998764

>3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas}

Probab=98.81  E-value=6.9e-09  Score=106.94  Aligned_cols=38  Identities=18%  Similarity=0.229  Sum_probs=34.6

Q ss_pred             CCcEEEECCChHHHHHHHHHHhC------CCcEEEEccCCCCCC
Q psy9141           6 KKSVVIVGGGLVGSLSACMFAKN------QYEVNLYEAREDIRN   43 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La~~------G~~V~viE~~~~~~~   43 (379)
                      ++||||||||++||++|+.|++.      |.+|+||||......
T Consensus        22 ~~DVvVVG~G~AGL~AAl~aa~~~~~~~pG~~V~vleK~~~~~s   65 (662)
T 3gyx_A           22 SVDLLMVGGGMGNCGAAFEAVRWADKYAPEAKILLVDKASLERS   65 (662)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHHHHHCTTCCEEEECSSCTTTC
T ss_pred             EcCEEEECCCHHHHHHHHHHHhhccccCCCCcEEEEEecCCCCC
Confidence            58999999999999999999997      999999999876544

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*

Probab=98.80  E-value=1.5e-08  Score=100.62  Aligned_cols=51  Identities=18%  Similarity=0.135  Sum_probs=40.6

Q ss_pred             cCCCCeEEeCceEEEEEecCCeEEEEEccCCc-eeEEEeecEEEecCCCChHHH
Q psy9141         108 QYPDCNIYFQHKLINLDVNSGNVTFYRTEDNS-ETKITDNQLIIGADGAYSGVR  160 (379)
Q Consensus       108 ~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~-~~~~i~adlVV~AdG~~S~vr  160 (379)
                      +..|++++++++|++++.+++++.+.+. ++. ..+ +++|.||.|.|....+.
T Consensus       232 ~~~Gv~v~~~~~v~~i~~~~~~~~v~~~-~~~g~~~-~~~D~vi~a~G~~p~~~  283 (476)
T 3lad_A          232 TKQGLKILLGARVTGTEVKNKQVTVKFV-DAEGEKS-QAFDKLIVAVGRRPVTT  283 (476)
T ss_dssp             HHTTEEEEETCEEEEEEECSSCEEEEEE-SSSEEEE-EEESEEEECSCEEECCT
T ss_pred             HhCCCEEEECCEEEEEEEcCCEEEEEEE-eCCCcEE-EECCEEEEeeCCcccCC
Confidence            3468999999999999988888888776 541 234 99999999999887554

>1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A*

Probab=98.80  E-value=1.8e-08  Score=103.81  Aligned_cols=147  Identities=20%  Similarity=0.239  Sum_probs=81.5

Q ss_pred             CCcEEEECCChHHHHHHHHHH---h-CCCcEEEEccCCCCCCCCCCCCc-cccccc----------CHHH-HH-HHHH-C
Q psy9141           6 KKSVVIVGGGLVGSLSACMFA---K-NQYEVNLYEAREDIRNSGLSEGK-SINLAL----------SVRG-RE-ALRR-I   67 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La---~-~G~~V~viE~~~~~~~~~~~~g~-~i~~al----------~~~~-~~-~l~~-l   67 (379)
                      ++||+|||||++||++|+.|+   + .|.+|+||||.+.........|. .++..+          ++.. .+ .+.. .
T Consensus        22 ~~DVvVIG~G~AGl~AAl~aa~~~~~~G~~V~vlEK~~~~~s~~~a~G~~~~~~~~~~~~~~g~~ds~~~~~~~~~~~g~  101 (643)
T 1jnr_A           22 ETDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAAVERSGAVAQGLSAINTYIDLTGRSERQNTLEDYVRYVTLDMM  101 (643)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHHTTTTCCEEEECSSCTTTCSTTTTCEEEESCCCCSSSSBSCCCCHHHHHHHHHHHTT
T ss_pred             cCCEEEECcCHHHHHHHHHHhhhhhhCCCeEEEEeCcCCCCCcceecccccccchhhHHHhcCCCCCHHHHHHHHHHHhc
Confidence            479999999999999999999   6 89999999999754322111121 111001          1110 01 1111 1


Q ss_pred             CC----------------hHHHHhCCCCceeeEEEecCCcEEE-----eeCC-CCCcH---HHHhcCCCC-eEEeCceEE
Q psy9141          68 GL----------------EDKLLAHGIPMRARMIHGQNGKLRE-----IPYD-PVHNQ---VELEQYPDC-NIYFQHKLI  121 (379)
Q Consensus        68 Gl----------------~~~l~~~~~~~~~~~~~~~~g~~~~-----~~~~-~~~~~---~~~~~~~gv-~i~~~~~v~  121 (379)
                      ++                .+.+...+.++..    ..+|....     ..+. ....+   ..+.+.+|+ +|+.++.|+
T Consensus       102 ~l~d~~~v~~~~~~~~~~i~~l~~~Gv~f~~----~~~g~~~~~~~~~~~~~g~~~~~~l~~~~~~~~gv~~i~~~~~v~  177 (643)
T 1jnr_A          102 GLAREDLVADYARHVDGTVHLFEKWGLPIWK----TPDGKYVREGQWQIMIHGESYKPIIAEAAKMAVGEENIYERVFIF  177 (643)
T ss_dssp             TCCCHHHHHHHHHHHHHHHHHHHHTTCCBCB----CTTSCBCBSSSSCEEEEETTHHHHHHHHHHHHHCGGGEECSEEEE
T ss_pred             CcCcHHHHHHHHHHHHHHHHHHHHcCCccee----CCCCCccCCCccccCCCcHHHHHHHHHHHHhcCCCcEEEecCEEE
Confidence            11                1122233433321    11221100     0000 00011   222222389 999999999


Q ss_pred             EEEecCC---eEE-EE--E-ccCCceeEEEeecEEEecCCCChH
Q psy9141         122 NLDVNSG---NVT-FY--R-TEDNSETKITDNQLIIGADGAYSG  158 (379)
Q Consensus       122 ~i~~~~~---~v~-v~--~-~~~G~~~~~i~adlVV~AdG~~S~  158 (379)
                      ++..+++   .+. +.  . . +|+..+ +.|+.||.|+|.+|.
T Consensus       178 ~L~~~~~~~g~v~Gv~~~~~~-~g~~~~-i~A~~VVlAtGG~~~  219 (643)
T 1jnr_A          178 ELLKDNNDPNAVAGAVGFSVR-EPKFYV-FKAKAVILATGGATL  219 (643)
T ss_dssp             EEEECTTCTTBEEEEEEEESS-SSCEEE-EECSEEEECCCCBCS
T ss_pred             EEEEcCCccceeEEEEEEEec-CCcEEE-EEcCEEEECCCcccc
Confidence            9987765   543 22  2 4 676555 899999999999986

>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens}

Probab=98.79  E-value=1.8e-08  Score=99.65  Aligned_cols=36  Identities=28%  Similarity=0.564  Sum_probs=33.4

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCC--cEEEEccCCCCC
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKNQY--EVNLYEAREDIR   42 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~G~--~V~viE~~~~~~   42 (379)
                      +||+|||||++||++|+.|+++|.  +|+|+|+++...
T Consensus         3 ~dVvVIGaGiaGLsaA~~L~~~G~~~~V~vlEa~~~~G   40 (477)
T 3nks_A            3 RTVVVLGGGISGLAASYHLSRAPCPPKVVLVESSERLG   40 (477)
T ss_dssp             CEEEEECCBHHHHHHHHHHHTSSSCCEEEEECSSSSSB
T ss_pred             ceEEEECCcHHHHHHHHHHHhCCCCCcEEEEeCCCCCC
Confidence            599999999999999999999999  999999987554

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}

Probab=98.77  E-value=2.1e-08  Score=99.49  Aligned_cols=121  Identities=17%  Similarity=0.264  Sum_probs=67.3

Q ss_pred             CCcEEEECCChHHHHHHHHHHhC--CCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceee
Q psy9141           6 KKSVVIVGGGLVGSLSACMFAKN--QYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRAR   83 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La~~--G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~   83 (379)
                      +.||+|||||++|+++|..|++.  |++|+|||+.+.....    .-+    +..       .++  ..+.         
T Consensus         3 ~~~VvIIGaG~aGl~aA~~L~~~~~g~~Vtvie~~~~~~~~----~~g----l~~-------~~~--g~~~---------   56 (472)
T 3iwa_A            3 LKHVVVIGAVALGPKAACRFKRLDPEAHVTMIDQASRISYG----GCG----IPY-------YVS--GEVS---------   56 (472)
T ss_dssp             -CEEEEECCSSHHHHHHHHHHHHCTTSEEEEECCC---------------------------------------------
T ss_pred             CCcEEEECCCHHHHHHHHHHHhhCcCCCEEEEECCCccccc----ccc----cch-------hhc--CCCC---------
Confidence            46999999999999999999998  9999999998754211    100    000       000  0000         


Q ss_pred             EEEecCCcEEEeeCCCCCcHHHHhcCCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEEEecCCCCh
Q psy9141          84 MIHGQNGKLREIPYDPVHNQVELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAYS  157 (379)
Q Consensus        84 ~~~~~~g~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlVV~AdG~~S  157 (379)
                         .. ......++..........+..+++++++++|++++.+...+.+....+|+..+ +.+|.||.|+|...
T Consensus        57 ---~~-~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~V~~id~~~~~v~~~~~~~g~~~~-~~~d~lviAtG~~p  125 (472)
T 3iwa_A           57 ---NI-ESLQATPYNVVRDPEFFRINKDVEALVETRAHAIDRAAHTVEIENLRTGERRT-LKYDKLVLALGSKA  125 (472)
T ss_dssp             ----------------------------CEEECSEEEEEEETTTTEEEEEETTTCCEEE-EECSEEEECCCEEE
T ss_pred             ---ch-HHhccccchhccCHHHHhhhcCcEEEECCEEEEEECCCCEEEEeecCCCCEEE-EECCEEEEeCCCCc
Confidence               00 00000000000000223334689999999999999888888877521466444 89999999999743

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=98.77  E-value=2.6e-08  Score=100.14  Aligned_cols=111  Identities=20%  Similarity=0.170  Sum_probs=74.1

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceee
Q psy9141           4 NSKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRAR   83 (379)
Q Consensus         4 m~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~   83 (379)
                      +..+||+||||||+|+++|+.|++.|++|+|+|+..  .      |..    ..        ..++.             
T Consensus       210 ~~~~dVvIIGgG~AGl~aA~~la~~G~~v~lie~~~--G------G~~----~~--------~~~~~-------------  256 (521)
T 1hyu_A          210 RDAYDVLIVGSGPAGAAAAVYSARKGIRTGLMGERF--G------GQV----LD--------TVDIE-------------  256 (521)
T ss_dssp             SCCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSST--T------GGG----TT--------CSCBC-------------
T ss_pred             cCcccEEEECCcHHHHHHHHHHHhCCCeEEEEECCC--C------Ccc----cc--------ccccc-------------
Confidence            346899999999999999999999999999998631  1      211    00        00100             


Q ss_pred             EEEecCCcEEEeeCCCC--CcH--HHHhcCCCCeEEeCceEEEEEec---CCeEEEEEccCCceeEEEeecEEEecCCCC
Q psy9141          84 MIHGQNGKLREIPYDPV--HNQ--VELEQYPDCNIYFQHKLINLDVN---SGNVTFYRTEDNSETKITDNQLIIGADGAY  156 (379)
Q Consensus        84 ~~~~~~g~~~~~~~~~~--~~~--~~~~~~~gv~i~~~~~v~~i~~~---~~~v~v~~~~~G~~~~~i~adlVV~AdG~~  156 (379)
                         +..+    .++...  ...  ....+..+++++.+++|++++.+   ++.+++++. +|++   +++|.||.|+|.+
T Consensus       257 ---~~~~----~~~~~~~~l~~~l~~~~~~~gv~v~~~~~v~~i~~~~~~~~~~~V~~~-~g~~---~~~d~vVlAtG~~  325 (521)
T 1hyu_A          257 ---NYIS----VPKTEGQKLAGALKAHVSDYDVDVIDSQSASKLVPAATEGGLHQIETA-SGAV---LKARSIIIATGAK  325 (521)
T ss_dssp             ---CBTT----BSSBCHHHHHHHHHHHHHTSCEEEECSCCEEEEECCSSTTSCEEEEET-TSCE---EEEEEEEECCCEE
T ss_pred             ---ccCC----CCCCCHHHHHHHHHHHHHHcCCEEEcCCEEEEEEeccCCCceEEEEEC-CCCE---EEcCEEEECCCCC
Confidence               0000    000000  000  22234468999999999999764   236888888 8877   9999999999987


Q ss_pred             hH
Q psy9141         157 SG  158 (379)
Q Consensus       157 S~  158 (379)
                      +.
T Consensus       326 ~~  327 (521)
T 1hyu_A          326 WR  327 (521)
T ss_dssp             EC
T ss_pred             cC
Confidence            63

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*

Probab=98.74  E-value=1.6e-08  Score=99.13  Aligned_cols=111  Identities=17%  Similarity=0.195  Sum_probs=72.3

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCC--cEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceee
Q psy9141           6 KKSVVIVGGGLVGSLSACMFAKNQY--EVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRAR   83 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La~~G~--~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~   83 (379)
                      ++||+|||||++|+++|..|++.|.  +|+|||+.+.....     +.   .++   .          .+........  
T Consensus         4 ~~~vvIIGgG~aGl~aA~~l~~~g~~~~V~lie~~~~~~~~-----~~---~l~---~----------~~~~~~~~~~--   60 (431)
T 1q1r_A            4 NDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATVIPHH-----LP---PLS---K----------AYLAGKATAE--   60 (431)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCCSCCBC-----SG---GGG---T----------TTTTTCSCSG--
T ss_pred             CCcEEEEcCHHHHHHHHHHHHccCcCCCEEEEECCCCCCCc-----CC---CCc---H----------HHhCCCCChH--
Confidence            5899999999999999999999998  79999987643210     00   000   0          0000000000  


Q ss_pred             EEEecCCcEEEeeCCCCCcHHHHhcCCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEEEecCCCChHH
Q psy9141          84 MIHGQNGKLREIPYDPVHNQVELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAYSGV  159 (379)
Q Consensus        84 ~~~~~~g~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlVV~AdG~~S~v  159 (379)
                                .+.+. .  .... +..+++++.+++|+.++.++..  +.+. +|++   +.+|.||.|+|..+..
T Consensus        61 ----------~~~~~-~--~~~~-~~~gv~~~~~~~v~~i~~~~~~--v~~~-~g~~---~~~d~lviAtG~~p~~  116 (431)
T 1q1r_A           61 ----------SLYLR-T--PDAY-AAQNIQLLGGTQVTAINRDRQQ--VILS-DGRA---LDYDRLVLATGGRPRP  116 (431)
T ss_dssp             ----------GGBSS-C--HHHH-HHTTEEEECSCCEEEEETTTTE--EEET-TSCE---EECSEEEECCCEEECC
T ss_pred             ----------Hhccc-C--HHHH-HhCCCEEEeCCEEEEEECCCCE--EEEC-CCCE---EECCEEEEcCCCCccC
Confidence                      00000 0  1222 2368999999999999876654  5556 8876   9999999999987643

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*

Probab=98.72  E-value=6.9e-09  Score=103.04  Aligned_cols=136  Identities=18%  Similarity=0.226  Sum_probs=80.4

Q ss_pred             CCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeE
Q psy9141           5 SKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARM   84 (379)
Q Consensus         5 ~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~   84 (379)
                      .++||+||||||+|+++|..|++.|++|+|||+.+...      |...+.. ...+..++...+.++.+.... ...++.
T Consensus         4 ~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~G------G~~~~~g-~~psk~l~~~~~~~~~~~~~~-~~~gi~   75 (478)
T 1v59_A            4 KSHDVVIIGGGPAGYVAAIKAAQLGFNTACVEKRGKLG------GTCLNVG-CIPSKALLNNSHLFHQMHTEA-QKRGID   75 (478)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSS------HHHHHHS-HHHHHHHHHHHHHHHHHHHTS-GGGTEE
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCcC------Cccceec-cHHHHHHHHHHHHHHHHHHHH-HhcCcc
Confidence            35899999999999999999999999999999975442      2111000 013445555555555554221 111222


Q ss_pred             EEecCCcEEEeeCCCCCcH------------HHHhcCCCCeEEeCceEEEEEecCCeEEEEEccCC--ce----eEEEee
Q psy9141          85 IHGQNGKLREIPYDPVHNQ------------VELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDN--SE----TKITDN  146 (379)
Q Consensus        85 ~~~~~g~~~~~~~~~~~~~------------~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G--~~----~~~i~a  146 (379)
                      .+  ..  ...++......            ....+..+++++.++.+.   .+++.+++.+. +|  ++    .+ +++
T Consensus        76 ~~--~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~---~~~~~v~V~~~-~G~~~~~~~~~~-i~~  146 (478)
T 1v59_A           76 VN--GD--IKINVANFQKAKDDAVKQLTGGIELLFKKNKVTYYKGNGSF---EDETKIRVTPV-DGLEGTVKEDHI-LDV  146 (478)
T ss_dssp             EC--SC--EEECHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESEEEE---SSSSEEEEECC-TTCTTCCSSCEE-EEE
T ss_pred             cC--CC--CccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEE---ccCCeEEEEec-CCCcccccccce-EEe
Confidence            11  00  11111100000            112233689999998765   25667888776 66  22    12 679


Q ss_pred             cEEEecCCCCh
Q psy9141         147 QLIIGADGAYS  157 (379)
Q Consensus       147 dlVV~AdG~~S  157 (379)
                      |.||.|+|.++
T Consensus       147 d~lViAtGs~p  157 (478)
T 1v59_A          147 KNIIVATGSEV  157 (478)
T ss_dssp             EEEEECCCEEE
T ss_pred             CEEEECcCCCC
Confidence            99999999876

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}

Probab=98.72  E-value=7.9e-08  Score=93.30  Aligned_cols=48  Identities=13%  Similarity=0.184  Sum_probs=40.6

Q ss_pred             cCCCCeEEeCceEEEEEecCCeEE-EEEccCCceeEEEeecEEEecCCCChHH
Q psy9141         108 QYPDCNIYFQHKLINLDVNSGNVT-FYRTEDNSETKITDNQLIIGADGAYSGV  159 (379)
Q Consensus       108 ~~~gv~i~~~~~v~~i~~~~~~v~-v~~~~~G~~~~~i~adlVV~AdG~~S~v  159 (379)
                      +..|++++++++|++++.+++++. +++. +|++   +.||.||.|.|..+..
T Consensus       195 ~~~GV~i~~~~~v~~i~~~~~~v~~V~~~-dG~~---i~aD~Vv~a~G~~p~~  243 (404)
T 3fg2_P          195 SGAGIRMHYGVRATEIAAEGDRVTGVVLS-DGNT---LPCDLVVVGVGVIPNV  243 (404)
T ss_dssp             HHTTCEEECSCCEEEEEEETTEEEEEEET-TSCE---EECSEEEECCCEEECC
T ss_pred             HhCCcEEEECCEEEEEEecCCcEEEEEeC-CCCE---EEcCEEEECcCCccCH
Confidence            346999999999999998777664 7888 8987   9999999999987643

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*

Probab=98.70  E-value=1.2e-08  Score=101.55  Aligned_cols=135  Identities=14%  Similarity=0.165  Sum_probs=77.1

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeEE
Q psy9141           6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARMI   85 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~~   85 (379)
                      ++||+||||||+|+++|..|++.|++|+|||+++...      |...+... ..+..++....+++.+.....  .++.+
T Consensus         6 ~~dVvIIGaG~aGl~aA~~l~~~G~~V~liE~~~~~G------G~~~~~g~-~psk~ll~~~~~~~~~~~~~~--~gi~~   76 (482)
T 1ojt_A            6 EYDVVVLGGGPGGYSAAFAAADEGLKVAIVERYKTLG------GVCLNVGC-IPSKALLHNAAVIDEVRHLAA--NGIKY   76 (482)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSCSS------HHHHHHSH-HHHHHHHHHHHHHHHHHHGGG--GTCCC
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCC------Cceeeecc-cchHHHHHHHHHHHHHHHHHh--CCccc
Confidence            5899999999999999999999999999999976442      21110000 123334443333333321100  01100


Q ss_pred             EecCCcEEEeeCCCCCcH------------HHHhcCCCCeEEeCceEEEEEecCCeEEEEEccCC----------ceeEE
Q psy9141          86 HGQNGKLREIPYDPVHNQ------------VELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDN----------SETKI  143 (379)
Q Consensus        86 ~~~~g~~~~~~~~~~~~~------------~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G----------~~~~~  143 (379)
                      .  ...   .++......            ....+..+++++.++.+.   .+++.+.+.+. +|          +..+ 
T Consensus        77 ~--~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~---~~~~~v~v~~~-~g~~~~~~~~~g~~~~-  146 (482)
T 1ojt_A           77 P--EPE---LDIDMLRAYKDGVVSRLTGGLAGMAKSRKVDVIQGDGQF---LDPHHLEVSLT-AGDAYEQAAPTGEKKI-  146 (482)
T ss_dssp             C--CCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEE---EETTEEEEEEE-EEEETTEEEEEEEEEE-
T ss_pred             C--CCc---cCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEeeEEEE---ccCCEEEEEec-CCcccccccccCcceE-
Confidence            0  000   000000000            122234689999887654   35567777655 55          1234 


Q ss_pred             EeecEEEecCCCChHH
Q psy9141         144 TDNQLIIGADGAYSGV  159 (379)
Q Consensus       144 i~adlVV~AdG~~S~v  159 (379)
                      +++|.||.|+|.++..
T Consensus       147 i~ad~lViAtGs~p~~  162 (482)
T 1ojt_A          147 VAFKNCIIAAGSRVTK  162 (482)
T ss_dssp             EEEEEEEECCCEEECC
T ss_pred             EEcCEEEECCCCCCCC
Confidence            9999999999998754

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1

Probab=98.69  E-value=2.1e-08  Score=100.11  Aligned_cols=48  Identities=8%  Similarity=0.102  Sum_probs=41.5

Q ss_pred             cCCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEEEecCCCChHH
Q psy9141         108 QYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAYSGV  159 (379)
Q Consensus       108 ~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlVV~AdG~~S~v  159 (379)
                      +..|++++++++|++++.+++++.+.+. +|++   +++|.||.|.|..+.+
T Consensus       234 ~~~GV~i~~~~~V~~i~~~~~~v~v~~~-~g~~---i~aD~Vv~a~G~~p~~  281 (499)
T 1xdi_A          234 AERGVRLFKNARAASVTRTGAGVLVTMT-DGRT---VEGSHALMTIGSVPNT  281 (499)
T ss_dssp             HHTTCEEETTCCEEEEEECSSSEEEEET-TSCE---EEESEEEECCCEEECC
T ss_pred             HHCCCEEEeCCEEEEEEEeCCEEEEEEC-CCcE---EEcCEEEECCCCCcCC
Confidence            3469999999999999987777888887 8877   9999999999998765

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.69  E-value=3.3e-09  Score=105.11  Aligned_cols=139  Identities=17%  Similarity=0.170  Sum_probs=78.1

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceee
Q psy9141           4 NSKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRAR   83 (379)
Q Consensus         4 m~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~   83 (379)
                      +.++||+||||||+|+++|..|++.|++|+|||+.+.....      ..+... ..+..++....+++.+.... ...+.
T Consensus         4 ~~~~dvvIIGaG~aGl~aA~~l~~~g~~V~liE~~~~~GG~------~~~~g~-~p~k~l~~~~~~~~~~~~~~-~~~g~   75 (470)
T 1dxl_A            4 SDENDVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRGALGGT------CLNVGC-IPSKALLHSSHMYHEAKHSF-ANHGV   75 (470)
T ss_dssp             CCCCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSCCS------HHHHSH-HHHHHHHHHHHHHHHHHHTH-HHHTE
T ss_pred             CccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcccc------ccCcCc-cchHHHHHHHHHHHHHHHHH-HhcCc
Confidence            34689999999999999999999999999999998654321      110000 11222222222222222100 00011


Q ss_pred             EEEecCCcEEEeeCCCCCcH------------HHHhcCCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEEEe
Q psy9141          84 MIHGQNGKLREIPYDPVHNQ------------VELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIG  151 (379)
Q Consensus        84 ~~~~~~g~~~~~~~~~~~~~------------~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlVV~  151 (379)
                      ..   ..  ...++......            ....+..+++++.++.+.   .+.+.+++.+. +|+..+ +++|.||.
T Consensus        76 ~~---~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~---~~~~~~~v~~~-~G~~~~-i~~d~lIi  145 (470)
T 1dxl_A           76 KV---SN--VEIDLAAMMGQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKF---VSPSEISVDTI-EGENTV-VKGKHIII  145 (470)
T ss_dssp             EE---SC--EEECHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEESCEEE---EETTEEEECCS-SSCCEE-EECSEEEE
T ss_pred             cc---CC--CccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEE---ecCCEEEEEeC-CCceEE-EEcCEEEE
Confidence            10   00  01111100000            112223589999998654   35567888776 773223 99999999


Q ss_pred             cCCCChHHH
Q psy9141         152 ADGAYSGVR  160 (379)
Q Consensus       152 AdG~~S~vr  160 (379)
                      |+|..+...
T Consensus       146 AtGs~p~~p  154 (470)
T 1dxl_A          146 ATGSDVKSL  154 (470)
T ss_dssp             CCCEEECCB
T ss_pred             CCCCCCCCC
Confidence            999987544

>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*

Probab=98.69  E-value=5.1e-08  Score=95.67  Aligned_cols=111  Identities=15%  Similarity=0.134  Sum_probs=72.7

Q ss_pred             CCCCCCCcEEEECCChHHHHHHHHHHh---CCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCC
Q psy9141           1 MKCNSKKSVVIVGGGLVGSLSACMFAK---NQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHG   77 (379)
Q Consensus         1 M~~m~~~dVvIVGaGpaGl~~A~~La~---~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~   77 (379)
                      |+.|  .||+|||||++|+++|..|++   .|++|+|||+.+....             .+..          ..+....
T Consensus         1 M~~m--~~vvIIGgG~aGl~aA~~L~~~~~~g~~Vtlie~~~~~~~-------------~~~~----------~~~~~g~   55 (437)
T 3sx6_A            1 MRGS--AHVVILGAGTGGMPAAYEMKEALGSGHEVTLISANDYFQF-------------VPSN----------PWVGVGW   55 (437)
T ss_dssp             CTTS--CEEEEECCSTTHHHHHHHHHHHHGGGSEEEEECSSSEEEC-------------GGGH----------HHHHHTS
T ss_pred             CCCC--CcEEEECCcHHHHHHHHHHhccCCCcCEEEEEeCCCCCcc-------------cCCc----------cccccCc
Confidence            5544  499999999999999999999   8999999998873311             1111          1111000


Q ss_pred             CCceeeEEEecCCcEEEeeCCCCCcHHHHhcCCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEEEecCCCCh
Q psy9141          78 IPMRARMIHGQNGKLREIPYDPVHNQVELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAYS  157 (379)
Q Consensus        78 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlVV~AdG~~S  157 (379)
                      .......          ..   .   ....+..+++++. .+|++++.++.  ++++. +|++   +.+|.||.|+|..+
T Consensus        56 ~~~~~~~----------~~---l---~~~~~~~gv~~~~-~~v~~id~~~~--~V~~~-~g~~---i~~d~lviAtG~~~  112 (437)
T 3sx6_A           56 KERDDIA----------FP---I---RHYVERKGIHFIA-QSAEQIDAEAQ--NITLA-DGNT---VHYDYLMIATGPKL  112 (437)
T ss_dssp             SCHHHHE----------EE---C---HHHHHTTTCEEEC-SCEEEEETTTT--EEEET-TSCE---EECSEEEECCCCEE
T ss_pred             cCHHHHH----------HH---H---HHHHHHCCCEEEE-eEEEEEEcCCC--EEEEC-CCCE---EECCEEEECCCCCc
Confidence            0000000          00   0   2233346899875 68999987766  45566 8877   99999999999976


Q ss_pred             HH
Q psy9141         158 GV  159 (379)
Q Consensus       158 ~v  159 (379)
                      ..
T Consensus       113 ~~  114 (437)
T 3sx6_A          113 AF  114 (437)
T ss_dssp             CG
T ss_pred             Cc
Confidence            53

>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7}

Probab=98.69  E-value=7.8e-08  Score=95.04  Aligned_cols=38  Identities=13%  Similarity=0.243  Sum_probs=35.2

Q ss_pred             CCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCC
Q psy9141           5 SKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIR   42 (379)
Q Consensus         5 ~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~   42 (379)
                      ..+||+|||+|++|+++|+.|++.|++|+|+|+++...
T Consensus        19 ~~~dv~iiG~G~~g~~~a~~l~~~g~~v~~~e~~~~~G   56 (475)
T 3p1w_A           19 EHYDVIILGTGLKECILSGLLSHYGKKILVLDRNPYYG   56 (475)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSC
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeccCCCC
Confidence            46899999999999999999999999999999998654

>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*

Probab=98.68  E-value=4.1e-08  Score=102.83  Aligned_cols=43  Identities=14%  Similarity=0.126  Sum_probs=38.4

Q ss_pred             CCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEEEecCCCC
Q psy9141         110 PDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAY  156 (379)
Q Consensus       110 ~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlVV~AdG~~  156 (379)
                      .+++|+++++|++|+.++++++|++. +|++   ++||.||.|....
T Consensus       542 ~gl~I~l~t~V~~I~~~~~~v~V~~~-~G~~---i~Ad~VIvA~P~~  584 (776)
T 4gut_A          542 EGLDIQLKSPVQCIDYSGDEVQVTTT-DGTG---YSAQKVLVTVPLA  584 (776)
T ss_dssp             TTSCEESSCCEEEEECSSSSEEEEET-TCCE---EEESEEEECCCHH
T ss_pred             hCCcEEcCCeeEEEEEcCCEEEEEEC-CCcE---EEcCEEEECCCHH
Confidence            37899999999999999999999998 8877   9999999999653

>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*

Probab=98.68  E-value=9.9e-08  Score=92.65  Aligned_cols=109  Identities=15%  Similarity=0.123  Sum_probs=70.4

Q ss_pred             cEEEECCChHHHHHHHHHHh---CCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeE
Q psy9141           8 SVVIVGGGLVGSLSACMFAK---NQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARM   84 (379)
Q Consensus         8 dVvIVGaGpaGl~~A~~La~---~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~   84 (379)
                      ||+|||||++|+++|..|++   .|++|+|||+++.....    .     .+.              ........     
T Consensus         3 ~VvIIGgG~aGl~aA~~L~~~~~~g~~V~vie~~~~~~~~----~-----~~~--------------~~~~~~~~-----   54 (409)
T 3h8l_A            3 KVLVLGGRFGALTAAYTLKRLVGSKADVKVINKSRFSYFR----P-----ALP--------------HVAIGVRD-----   54 (409)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHHGGGSEEEEEESSSEEEEC----C-----SSC--------------CCCSSCCC-----
T ss_pred             eEEEECCCHHHHHHHHHHHhhCCCCCeEEEEeCCCCceec----c-----chh--------------hcccCCcC-----
Confidence            89999999999999999999   89999999998743211    0     000              00000000     


Q ss_pred             EEecCCcEEEeeCCCCCcHHHHhcCCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEEEecCCCChH
Q psy9141          85 IHGQNGKLREIPYDPVHNQVELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAYSG  158 (379)
Q Consensus        85 ~~~~~g~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlVV~AdG~~S~  158 (379)
                          ... ....      ........+++++.+ +|++++.++..+++... +++..+ +++|.||.|+|....
T Consensus        55 ----~~~-~~~~------~~~~~~~~gv~~~~~-~v~~i~~~~~~V~~~~g-~~~~~~-~~~d~lViAtG~~~~  114 (409)
T 3h8l_A           55 ----VDE-LKVD------LSEALPEKGIQFQEG-TVEKIDAKSSMVYYTKP-DGSMAE-EEYDYVIVGIGAHLA  114 (409)
T ss_dssp             ----CCC-EEEE------HHHHTGGGTCEEEEC-EEEEEETTTTEEEEECT-TSCEEE-EECSEEEECCCCEEC
T ss_pred             ----HHH-HHHH------HHHHHhhCCeEEEEe-eEEEEeCCCCEEEEccC-Ccccce-eeCCEEEECCCCCcC
Confidence                000 0000      022233458999987 89999887777666533 333345 899999999998654

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}

Probab=98.66  E-value=5.1e-08  Score=96.43  Aligned_cols=48  Identities=6%  Similarity=0.031  Sum_probs=38.9

Q ss_pred             cCCCCeEEeCceEEEEEecCCe-EEEE-EccCCceeEEEeecEEEecCCCChHHH
Q psy9141         108 QYPDCNIYFQHKLINLDVNSGN-VTFY-RTEDNSETKITDNQLIIGADGAYSGVR  160 (379)
Q Consensus       108 ~~~gv~i~~~~~v~~i~~~~~~-v~v~-~~~~G~~~~~i~adlVV~AdG~~S~vr  160 (379)
                      +..|++++.+++|++++.++++ +.++ +. +|+    +++|.||.|.|..+.+.
T Consensus       222 ~~~Gv~i~~~~~v~~i~~~~~~~~~v~~~~-~g~----i~aD~Vv~a~G~~p~~~  271 (463)
T 4dna_A          222 EEKGIRILCEDIIQSVSADADGRRVATTMK-HGE----IVADQVMLALGRMPNTN  271 (463)
T ss_dssp             HHTTCEEECSCCEEEEEECTTSCEEEEESS-SCE----EEESEEEECSCEEESCT
T ss_pred             HHCCCEEECCCEEEEEEEcCCCEEEEEEcC-CCe----EEeCEEEEeeCcccCCC
Confidence            4469999999999999987655 6677 76 775    78999999999976543

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}

Probab=98.65  E-value=3.7e-08  Score=97.49  Aligned_cols=136  Identities=20%  Similarity=0.219  Sum_probs=74.1

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeEE
Q psy9141           6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARMI   85 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~~   85 (379)
                      ++||+||||||+|+++|..|++.|++|+||||.+...      |...+... ..+..++......+.+..........  
T Consensus         4 ~~DVvVIGgG~aGl~aA~~l~~~G~~V~liEk~~~~G------G~~~~~gc-iPsk~l~~~a~~~~~~~~~~~~~~~~--   74 (466)
T 3l8k_A            4 KYDVVVIGAGGAGYHGAFRLAKAKYNVLMADPKGELG------GNCLYSGC-VPSKTVREVIQTAWRLTNIANVKIPL--   74 (466)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECTTSSSS------HHHHHHSH-HHHHHHHHHHHHHHHHHHHHCSCCCC--
T ss_pred             cceEEEECCCHHHHHHHHHHHhCCCeEEEEECCCCCC------CcccccCC-CchHHHHHHHHHHHHHHhcccCCCCc--
Confidence            5899999999999999999999999999999876543      21100000 01111221111111111110000000  


Q ss_pred             EecCCcE-EEeeCCCCCc--H--HHHhcCCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEEEecCCCCh
Q psy9141          86 HGQNGKL-REIPYDPVHN--Q--VELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAYS  157 (379)
Q Consensus        86 ~~~~g~~-~~~~~~~~~~--~--~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlVV~AdG~~S  157 (379)
                       +...-. ....+... .  .  ....+..+++++.+ +++.++  .+.+.+... +|++.+ +.+|.||.|+|...
T Consensus        75 -~~~~~~~~~~~~~~l-~~~~~~~~~~~~~~v~~~~g-~v~~id--~~~~~V~~~-~g~~~~-~~~d~lviAtG~~p  144 (466)
T 3l8k_A           75 -DFSTVQDRKDYVQEL-RFKQHKRNMSQYETLTFYKG-YVKIKD--PTHVIVKTD-EGKEIE-AETRYMIIASGAET  144 (466)
T ss_dssp             -CHHHHHHHHHHHHHH-HHHHHHHHHTTCTTEEEESE-EEEEEE--TTEEEEEET-TSCEEE-EEEEEEEECCCEEE
T ss_pred             -CHHHHHHHHHhheec-cccchHHHHHHhCCCEEEEe-EEEEec--CCeEEEEcC-CCcEEE-EecCEEEECCCCCc
Confidence             000000 00000000 0  1  22334568888877 566554  567888887 887666 88999999999754

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}

Probab=98.65  E-value=8.2e-08  Score=94.63  Aligned_cols=111  Identities=19%  Similarity=0.289  Sum_probs=71.9

Q ss_pred             CcEEEECCChHHHHHHHHHHhC--CCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeE
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKN--QYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARM   84 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~--G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~   84 (379)
                      +||+||||||+|+++|..|++.  |.+|+|||+.+.....    ..++    ..    .+.  +   ..           
T Consensus         3 ~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~~~~~g~~----~~~~----~~----~~~--~---~~-----------   54 (452)
T 3oc4_A            3 LKIVIIGASFAGISAAIASRKKYPQAEISLIDKQATVGYL----SGGL----SA----YFN--H---TI-----------   54 (452)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSSEEEEECSSSCCSSC----CC----------------------------------
T ss_pred             CCEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCccc----Cccc----hh----hhc--C---CC-----------
Confidence            4999999999999999999998  8999999999754311    1000    00    000  0   00           


Q ss_pred             EEecCCcEEEeeCCCCCcHHHHhcCCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEEEecCCCCh
Q psy9141          85 IHGQNGKLREIPYDPVHNQVELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAYS  157 (379)
Q Consensus        85 ~~~~~g~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlVV~AdG~~S  157 (379)
                       ...    ....+. .  ..... ..+++++.+++|++++.+...+++...  ++..+ +++|.||.|+|...
T Consensus        55 -~~~----~~~~~~-~--~~~~~-~~gi~~~~~~~V~~id~~~~~v~v~~~--~~~~~-~~~d~lviAtG~~p  115 (452)
T 3oc4_A           55 -NEL----HEARYI-T--EEELR-RQKIQLLLNREVVAMDVENQLIAWTRK--EEQQW-YSYDKLILATGASQ  115 (452)
T ss_dssp             -----------CCC-C--HHHHH-HTTEEEECSCEEEEEETTTTEEEEEET--TEEEE-EECSEEEECCCCCB
T ss_pred             -CCH----HHhhcC-C--HHHHH-HCCCEEEECCEEEEEECCCCEEEEEec--CceEE-EEcCEEEECCCccc
Confidence             000    000010 1  12222 358999999999999998888887633  23334 99999999999865

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}

Probab=98.63  E-value=7.9e-08  Score=94.63  Aligned_cols=111  Identities=23%  Similarity=0.341  Sum_probs=68.0

Q ss_pred             CCCcEEEECCChHHHHHHHHHHhC--CCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCcee
Q psy9141           5 SKKSVVIVGGGLVGSLSACMFAKN--QYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRA   82 (379)
Q Consensus         5 ~~~dVvIVGaGpaGl~~A~~La~~--G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~   82 (379)
                      +.+||+|||||++|+++|..|++.  |++|+|||+.+.....    ...    + +.            .+.  +     
T Consensus         2 ~~~~VvIIGgG~aGl~aA~~L~~~~~~~~V~vie~~~~~~~~----~~~----~-p~------------~~~--~-----   53 (449)
T 3kd9_A            2 SLKKVVIIGGGAAGMSAASRVKRLKPEWDVKVFEATEWVSHA----PCG----I-PY------------VVE--G-----   53 (449)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSSCCC----------------------------------------
T ss_pred             CcCcEEEECCcHHHHHHHHHHHHhCcCCCEEEEECCCccccC----CcC----C-cc------------ccC--C-----
Confidence            357999999999999999999998  8899999998744211    000    0 00            000  0     


Q ss_pred             eEEEecCCcEEEeeCCCCCcHHHHhcCCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEEEecCCCCh
Q psy9141          83 RMIHGQNGKLREIPYDPVHNQVELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAYS  157 (379)
Q Consensus        83 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlVV~AdG~~S  157 (379)
                      .  .... .  ...+..    ....+..+++++++++|++++.  +..++.+. +|+ .+ +.+|.||.|+|...
T Consensus        54 ~--~~~~-~--~~~~~~----~~~~~~~gi~v~~~~~v~~i~~--~~~~v~~~-~g~-~~-~~~d~lviAtG~~p  114 (449)
T 3kd9_A           54 L--STPD-K--LMYYPP----EVFIKKRGIDLHLNAEVIEVDT--GYVRVREN-GGE-KS-YEWDYLVFANGASP  114 (449)
T ss_dssp             ---------------------CTHHHHTTCEEETTCEEEEECS--SEEEEECS-SSE-EE-EECSEEEECCCEEE
T ss_pred             C--CCHH-H--hhhcCH----HHHHHhcCcEEEecCEEEEEec--CCCEEEEC-Cce-EE-EEcCEEEECCCCCC
Confidence            0  0000 0  000000    1132336899999999998854  34556655 663 23 89999999999654

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=98.62  E-value=1.3e-07  Score=96.33  Aligned_cols=117  Identities=15%  Similarity=0.131  Sum_probs=77.5

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHhC--CCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCce
Q psy9141           4 NSKKSVVIVGGGLVGSLSACMFAKN--QYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMR   81 (379)
Q Consensus         4 m~~~dVvIVGaGpaGl~~A~~La~~--G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~   81 (379)
                      |...||+|||||++|+++|..|++.  |++|+|||+.+.....             +.+..        ..+.....+. 
T Consensus        34 ~~~~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~~~~~~~~-------------~~~lp--------~~~~g~~~~~-   91 (588)
T 3ics_A           34 WGSRKIVVVGGVAGGASVAARLRRLSEEDEIIMVERGEYISFA-------------NCGLP--------YYIGGVITER-   91 (588)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHHCSSSEEEEECSSSCSSBC-------------GGGHH--------HHHTTSSCCG-
T ss_pred             ccCCCEEEECCcHHHHHHHHHHHhhCcCCCEEEEECCCCcccc-------------CCCCc--------hhhcCcCCCh-
Confidence            4457999999999999999999998  8999999998754211             11110        0010000000 


Q ss_pred             eeEEEecCCcEEEeeCCCCCcHHHHhcCCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEEEecCCCCh
Q psy9141          82 ARMIHGQNGKLREIPYDPVHNQVELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAYS  157 (379)
Q Consensus        82 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlVV~AdG~~S  157 (379)
                             . .    .+...  .....+..+++++++++|++++.++..+.+....+|+..+ +.+|.||.|+|...
T Consensus        92 -------~-~----~~~~~--~~~~~~~~gi~v~~~~~V~~id~~~~~v~v~~~~~g~~~~-~~~d~lviAtG~~p  152 (588)
T 3ics_A           92 -------Q-K----LLVQT--VERMSKRFNLDIRVLSEVVKINKEEKTITIKNVTTNETYN-EAYDVLILSPGAKP  152 (588)
T ss_dssp             -------G-G----GBSSC--HHHHHHHTTCEEECSEEEEEEETTTTEEEEEETTTCCEEE-EECSEEEECCCEEE
T ss_pred             -------H-H----hhccC--HHHHHHhcCcEEEECCEEEEEECCCCEEEEeecCCCCEEE-EeCCEEEECCCCCC
Confidence                   0 0    01100  0333334689999999999999988888887532566444 89999999999753

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*

Probab=98.62  E-value=2.2e-07  Score=92.27  Aligned_cols=114  Identities=15%  Similarity=0.112  Sum_probs=75.2

Q ss_pred             CcEEEECCChHHHHHHHHHHhC--CCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeE
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKN--QYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARM   84 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~--G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~   84 (379)
                      +||+||||||+|+++|..|++.  |.+|+|||+.+.....    .        + +...+        +........   
T Consensus        37 ~dvvIIG~G~aGl~aA~~l~~~~~g~~V~lie~~~~~~~~----~--------~-~~~~~--------~~~~~~~~~---   92 (480)
T 3cgb_A           37 MNYVIIGGDAAGMSAAMQIVRNDENANVVTLEKGEIYSYA----Q--------C-GLPYV--------ISGAIASTE---   92 (480)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSSSCCSBC----G--------G-GHHHH--------HTTSSSCGG---
T ss_pred             ceEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCCCC----C--------C-Ccchh--------hcCCcCCHH---
Confidence            5999999999999999999996  8999999998654211    0        0 00000        000000000   


Q ss_pred             EEecCCcEEEeeCCCCCcHHHHhcCCCCeEEeCceEEEEEecCCeEEEEE-ccCCceeEEEeecEEEecCCCChH
Q psy9141          85 IHGQNGKLREIPYDPVHNQVELEQYPDCNIYFQHKLINLDVNSGNVTFYR-TEDNSETKITDNQLIIGADGAYSG  158 (379)
Q Consensus        85 ~~~~~g~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~-~~~G~~~~~i~adlVV~AdG~~S~  158 (379)
                            .   + ....  .....+..+++++.+++|+.++.+++.+++.. . +|+..+ +++|.||.|+|....
T Consensus        93 ------~---l-~~~~--~~~~~~~~gv~~~~~~~v~~i~~~~~~v~v~~~~-~g~~~~-~~~d~lviAtG~~p~  153 (480)
T 3cgb_A           93 ------K---L-IARN--VKTFRDKYGIDAKVRHEVTKVDTEKKIVYAEHTK-TKDVFE-FSYDRLLIATGVRPV  153 (480)
T ss_dssp             ------G---G-BSSC--HHHHHHTTCCEEESSEEEEEEETTTTEEEEEETT-TCCEEE-EECSEEEECCCEEEC
T ss_pred             ------H---h-hhcC--HHHHHhhcCCEEEeCCEEEEEECCCCEEEEEEcC-CCceEE-EEcCEEEECCCCccc
Confidence                  0   0 0000  13343446899999999999998888888776 4 576334 999999999997653

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*

Probab=98.62  E-value=2.3e-07  Score=91.73  Aligned_cols=47  Identities=13%  Similarity=0.149  Sum_probs=38.8

Q ss_pred             CCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEEEecCCCChHHH
Q psy9141         109 YPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAYSGVR  160 (379)
Q Consensus       109 ~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlVV~AdG~~S~vr  160 (379)
                      ..|++++++++|++++.+++.+.+.+.  +.+   +++|.||.|.|..+.+.
T Consensus       228 ~~Gv~i~~~~~v~~i~~~~~~~~v~~~--~~~---i~aD~Vv~a~G~~p~~~  274 (467)
T 1zk7_A          228 AEGIEVLEHTQASQVAHMDGEFVLTTT--HGE---LRADKLLVATGRTPNTR  274 (467)
T ss_dssp             HTTCEEETTCCEEEEEEETTEEEEEET--TEE---EEESEEEECSCEEESCT
T ss_pred             hCCCEEEcCCEEEEEEEeCCEEEEEEC--CcE---EEcCEEEECCCCCcCCC
Confidence            468999999999999987777777765  444   99999999999987653

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}

Probab=98.61  E-value=2.4e-07  Score=85.91  Aligned_cols=108  Identities=14%  Similarity=0.097  Sum_probs=68.8

Q ss_pred             CCCcEEEECCChHHHHHHHHHHhCCCcEEE-EccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceee
Q psy9141           5 SKKSVVIVGGGLVGSLSACMFAKNQYEVNL-YEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRAR   83 (379)
Q Consensus         5 ~~~dVvIVGaGpaGl~~A~~La~~G~~V~v-iE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~   83 (379)
                      ..+||+||||||+|+++|..|++.|++|+| +|+.. ..      |...   ..          .          ..   
T Consensus         3 ~~~~vvIIG~G~aGl~aA~~l~~~g~~v~li~e~~~-~g------G~~~---~~----------~----------~~---   49 (315)
T 3r9u_A            3 AMLDVAIIGGGPAGLSAGLYATRGGLKNVVMFEKGM-PG------GQIT---SS----------S----------EI---   49 (315)
T ss_dssp             SCEEEEEECCSHHHHHHHHHHHHHTCSCEEEECSSS-TT------GGGG---GC----------S----------CB---
T ss_pred             CCceEEEECCCHHHHHHHHHHHHCCCCeEEEEeCCC-CC------ceee---ee----------c----------ee---
Confidence            357999999999999999999999999999 99932 21      2110   00          0          00   


Q ss_pred             EEEecCCcEEEeeCCCCCcH-----HHHhcCCCCeEEeCceEEEEEecC--CeEEEEEccCCceeEEEeecEEEecCCCC
Q psy9141          84 MIHGQNGKLREIPYDPVHNQ-----VELEQYPDCNIYFQHKLINLDVNS--GNVTFYRTEDNSETKITDNQLIIGADGAY  156 (379)
Q Consensus        84 ~~~~~~g~~~~~~~~~~~~~-----~~~~~~~gv~i~~~~~v~~i~~~~--~~v~v~~~~~G~~~~~i~adlVV~AdG~~  156 (379)
                        ....+.    +.......     ....+..+++++++ +|+++ .++  +.+.+.+..++ +   +.+|.||.|+|..
T Consensus        50 --~~~~~~----~~~~~~~~~~~~~~~~~~~~~v~~~~~-~v~~i-~~~~~~~~~v~~~~~~-~---~~~d~lvlAtG~~  117 (315)
T 3r9u_A           50 --ENYPGV----AQVMDGISFMAPWSEQCMRFGLKHEMV-GVEQI-LKNSDGSFTIKLEGGK-T---ELAKAVIVCTGSA  117 (315)
T ss_dssp             --CCSTTC----CSCBCHHHHHHHHHHHHTTTCCEEECC-CEEEE-EECTTSCEEEEETTSC-E---EEEEEEEECCCEE
T ss_pred             --ccCCCC----CCCCCHHHHHHHHHHHHHHcCcEEEEE-EEEEE-ecCCCCcEEEEEecCC-E---EEeCEEEEeeCCC
Confidence              000000    00000000     23344568999988 89999 666  67775444133 4   9999999999974


Q ss_pred             h
Q psy9141         157 S  157 (379)
Q Consensus       157 S  157 (379)
                      .
T Consensus       118 ~  118 (315)
T 3r9u_A          118 P  118 (315)
T ss_dssp             E
T ss_pred             C
Confidence            3

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*

Probab=98.60  E-value=9.3e-08  Score=93.01  Aligned_cols=111  Identities=15%  Similarity=0.198  Sum_probs=71.4

Q ss_pred             CCC-CCCCcEEEECCChHHHHHHHHHHhCCC--cEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCC
Q psy9141           1 MKC-NSKKSVVIVGGGLVGSLSACMFAKNQY--EVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHG   77 (379)
Q Consensus         1 M~~-m~~~dVvIVGaGpaGl~~A~~La~~G~--~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~   77 (379)
                      |++ +.++||+||||||+|+++|..|++.|.  +|+|+|+.+....     .+.   .++   ..++..         ..
T Consensus         1 M~~~~~~~~vvIIG~G~aGl~aA~~l~~~g~~~~V~lie~~~~~~~-----~~~---~~~---~~~~~~---------~~   60 (408)
T 2gqw_A            1 MSQEALKAPVVVLGAGLASVSFVAELRQAGYQGLITVVGDEAERPY-----DRP---PLS---KDFMAH---------GD   60 (408)
T ss_dssp             -----CCSSEEEECCSHHHHHHHHHHHHHTCCSCEEEEESSCSCCB-----CSG---GGG---THHHHH---------CC
T ss_pred             CCCCCCCCcEEEECChHHHHHHHHHHHccCCCCeEEEEECCCCCcc-----cCC---CCC---HHHhCC---------Cc
Confidence            543 346899999999999999999999998  4999999864321     110   011   111111         00


Q ss_pred             CCceeeEEEecCCcEEEeeCCCCCcHHHHhcCCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEEEecCCCCh
Q psy9141          78 IPMRARMIHGQNGKLREIPYDPVHNQVELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAYS  157 (379)
Q Consensus        78 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlVV~AdG~~S  157 (379)
                        ....          .+  ..      . ...+++++.+++|+.++.+...  +++. +|++   +.+|.||.|+|..+
T Consensus        61 --~~~~----------~~--~~------~-~~~~v~~~~~~~v~~i~~~~~~--v~~~-~g~~---~~~d~lviAtG~~~  113 (408)
T 2gqw_A           61 --AEKI----------RL--DC------K-RAPEVEWLLGVTAQSFDPQAHT--VALS-DGRT---LPYGTLVLATGAAP  113 (408)
T ss_dssp             --GGGS----------BC--CC------T-TSCSCEEEETCCEEEEETTTTE--EEET-TSCE---EECSEEEECCCEEE
T ss_pred             --hhhh----------hH--HH------H-HHCCCEEEcCCEEEEEECCCCE--EEEC-CCCE---EECCEEEECCCCCC
Confidence              0000          00  01      1 1358999999999999876544  5556 7876   99999999999865


Q ss_pred             H
Q psy9141         158 G  158 (379)
Q Consensus       158 ~  158 (379)
                      .
T Consensus       114 ~  114 (408)
T 2gqw_A          114 R  114 (408)
T ss_dssp             C
T ss_pred             C
Confidence            3

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*

Probab=98.60  E-value=9.7e-08  Score=95.88  Aligned_cols=36  Identities=22%  Similarity=0.242  Sum_probs=33.6

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCC
Q psy9141           4 NSKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEARE   39 (379)
Q Consensus         4 m~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~   39 (379)
                      +.+|||+||||||+|+++|..|++.|++|+|||+.+
T Consensus        30 ~~~~DVvVIGgGpaGl~aA~~la~~G~~V~liEk~~   65 (519)
T 3qfa_A           30 SYDYDLIIIGGGSGGLAAAKEAAQYGKKVMVLDFVT   65 (519)
T ss_dssp             SCSEEEEEECCSHHHHHHHHHHHHTTCCEEEECCCC
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHhCCCeEEEEeccC
Confidence            457899999999999999999999999999999975

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*

Probab=98.60  E-value=1.2e-08  Score=101.19  Aligned_cols=133  Identities=17%  Similarity=0.165  Sum_probs=75.1

Q ss_pred             CCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHH-----hCCCC
Q psy9141           5 SKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLL-----AHGIP   79 (379)
Q Consensus         5 ~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~-----~~~~~   79 (379)
                      .++||+||||||+|+++|..|++.|++|+|||+.+...      |...+... ..+..++.....+..+.     ..+.+
T Consensus         5 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~liE~~~~~G------G~~~~~g~-~Psk~l~~~~~~~~~~~~~~~~~~g~~   77 (474)
T 1zmd_A            5 IDADVTVIGSGPGGYVAAIKAAQLGFKTVCIEKNETLG------GTCLNVGC-IPSKALLNNSHYYHMAHGTDFASRGIE   77 (474)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSS------HHHHHHSH-HHHHHHHHHHHHHHHHHSSHHHHTTEE
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCcC------CcccccCc-cchHHHHHHHHHHHHhhhhhHhhCccc
Confidence            45899999999999999999999999999999986542      11000000 11222332222222221     11211


Q ss_pred             ceeeEEEecCCcEEEeeCCCCCc----------H--HHHhcCCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeec
Q psy9141          80 MRARMIHGQNGKLREIPYDPVHN----------Q--VELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQ  147 (379)
Q Consensus        80 ~~~~~~~~~~g~~~~~~~~~~~~----------~--~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~ad  147 (379)
                      ..        .  ...++.....          .  ....+..+++++.++.+ .+  +.+.+++.+. +|...+ +++|
T Consensus        78 ~~--------~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~-~~--~~~~~~v~~~-~gg~~~-~~~d  142 (474)
T 1zmd_A           78 MS--------E--VRLNLDKMMEQKSTAVKALTGGIAHLFKQNKVVHVNGYGK-IT--GKNQVTATKA-DGGTQV-IDTK  142 (474)
T ss_dssp             ES--------C--EEECHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESEEE-EE--ETTEEEEECT-TSCEEE-EEEE
T ss_pred             cC--------C--CccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEE-Ee--cCCEEEEEec-CCCcEE-EEeC
Confidence            00        0  0111110000          0  12223368999998653 23  5667888776 632223 9999


Q ss_pred             EEEecCCCChHH
Q psy9141         148 LIIGADGAYSGV  159 (379)
Q Consensus       148 lVV~AdG~~S~v  159 (379)
                      .||.|+|..+..
T Consensus       143 ~lViAtGs~p~~  154 (474)
T 1zmd_A          143 NILIATGSEVTP  154 (474)
T ss_dssp             EEEECCCEEECC
T ss_pred             EEEECCCCCCCC
Confidence            999999987643

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}

Probab=98.59  E-value=2.6e-07  Score=89.14  Aligned_cols=109  Identities=12%  Similarity=0.122  Sum_probs=73.1

Q ss_pred             CCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeE
Q psy9141           5 SKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARM   84 (379)
Q Consensus         5 ~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~   84 (379)
                      ++.+|+|||||+||+++|..|++.+.+|+|||+.+.....     +       +.--..+.          .......  
T Consensus         8 ~~~~~vIvGgG~AGl~aA~~L~~~~~~itlie~~~~~~y~-----~-------~~l~~~l~----------g~~~~~~--   63 (385)
T 3klj_A            8 KSTKILILGAGPAGFSAAKAALGKCDDITMINSEKYLPYY-----R-------PRLNEIIA----------KNKSIDD--   63 (385)
T ss_dssp             CBCSEEEECCSHHHHHHHHHHTTTCSCEEEECSSSSCCBC-----G-------GGHHHHHH----------SCCCGGG--
T ss_pred             CCCCEEEEcCcHHHHHHHHHHhCCCCEEEEEECCCCCCcc-----c-------ChhhHHHc----------CCCCHHH--
Confidence            4679999999999999999998889999999998754211     1       11001111          1000000  


Q ss_pred             EEecCCcEEEeeCCCCCcHHHHhcCCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEEEecCCCCh
Q psy9141          85 IHGQNGKLREIPYDPVHNQVELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAYS  157 (379)
Q Consensus        85 ~~~~~g~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlVV~AdG~~S  157 (379)
                                + +...   ....+..+++++++++|++++.++..  +++. +|++   +.+|.||.|+|...
T Consensus        64 ----------l-~~~~---~~~~~~~~i~~~~~~~V~~id~~~~~--v~~~-~g~~---~~yd~lvlAtG~~p  116 (385)
T 3klj_A           64 ----------I-LIKK---NDWYEKNNIKVITSEFATSIDPNNKL--VTLK-SGEK---IKYEKLIIASGSIA  116 (385)
T ss_dssp             ----------T-BSSC---HHHHHHTTCEEECSCCEEEEETTTTE--EEET-TSCE---EECSEEEECCCEEE
T ss_pred             ----------c-cCCC---HHHHHHCCCEEEeCCEEEEEECCCCE--EEEC-CCCE---EECCEEEEecCCCc
Confidence                      0 0001   11222358999999999999887764  4556 8887   99999999999743

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*

Probab=98.58  E-value=2.7e-07  Score=90.71  Aligned_cols=112  Identities=15%  Similarity=0.170  Sum_probs=73.2

Q ss_pred             cEEEECCChHHHHHHHHHHhC--CCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeEE
Q psy9141           8 SVVIVGGGLVGSLSACMFAKN--QYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARMI   85 (379)
Q Consensus         8 dVvIVGaGpaGl~~A~~La~~--G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~~   85 (379)
                      ||+|||||++|+++|..|++.  |.+|+|||+.+.....    +        + .....        +.........   
T Consensus         2 dvvIIG~G~aGl~aA~~l~~~~~g~~V~lie~~~~~~~~----~--------~-~~~~~--------~~~~~~~~~~---   57 (447)
T 1nhp_A            2 KVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFISFL----S--------A-GMQLY--------LEGKVKDVNS---   57 (447)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSSSSSBC----G--------G-GHHHH--------HTTSSCCGGG---
T ss_pred             eEEEECCCHHHHHHHHHHHHhCcCCeEEEEECCCccCcc----c--------c-cchhh--------hcCccCCHHH---
Confidence            899999999999999999998  9999999998643211    1        1 10000        0000000000   


Q ss_pred             EecCCcEEEeeCCCCCcHHHHhcCCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEEEecCCCCh
Q psy9141          86 HGQNGKLREIPYDPVHNQVELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAYS  157 (379)
Q Consensus        86 ~~~~g~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlVV~AdG~~S  157 (379)
                               + ....  ...+.+ .+++++.+++++.++.+++.+++....+|+..+ +++|.||.|+|...
T Consensus        58 ---------~-~~~~--~~~~~~-~gv~~~~~~~v~~i~~~~~~v~~~~~~~g~~~~-~~~d~lviAtG~~p  115 (447)
T 1nhp_A           58 ---------V-RYMT--GEKMES-RGVNVFSNTEITAIQPKEHQVTVKDLVSGEERV-ENYDKLIISPGAVP  115 (447)
T ss_dssp             ---------S-BSCC--HHHHHH-TTCEEEETEEEEEEETTTTEEEEEETTTCCEEE-EECSEEEECCCEEE
T ss_pred             ---------h-hcCC--HHHHHH-CCCEEEECCEEEEEeCCCCEEEEEecCCCceEE-EeCCEEEEcCCCCc
Confidence                     0 0011  122333 489999999999998888888776521566445 89999999999764

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.57  E-value=8e-08  Score=94.77  Aligned_cols=132  Identities=15%  Similarity=0.127  Sum_probs=75.5

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeEE
Q psy9141           6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARMI   85 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~~   85 (379)
                      ++||+||||||+|+++|..|++.|++|+|||+.. ..      |...+..- ..+..++.....++.+...  ...+..+
T Consensus         3 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~~-~g------G~~~~~g~-~p~k~l~~~~~~~~~~~~~--~~~g~~~   72 (455)
T 1ebd_A            3 ETETLVVGAGPGGYVAAIRAAQLGQKVTIVEKGN-LG------GVCLNVGC-IPSKALISASHRYEQAKHS--EEMGIKA   72 (455)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTCCEEEEESSC-TT------HHHHHTSH-HHHHHHHHHHHHHHHHHTC--GGGTEEC
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCeEEEEECCC-CC------CcCcCcCc-hhhHHHHHHHHHHHHHHHH--HhcCccc
Confidence            4799999999999999999999999999999972 21      21110000 1122223222222332211  0011110


Q ss_pred             EecCCcEEEeeCCCCCcH------------HHHhcCCCCeEEeCceEEEEEecCCeEEEEEccCC-ceeEEEeecEEEec
Q psy9141          86 HGQNGKLREIPYDPVHNQ------------VELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDN-SETKITDNQLIIGA  152 (379)
Q Consensus        86 ~~~~g~~~~~~~~~~~~~------------~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G-~~~~~i~adlVV~A  152 (379)
                         ..  ...++......            ....+..+++++.++.+.   .+.+.+++.+. +| ++   +++|.||.|
T Consensus        73 ---~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~---id~~~v~V~~~-~G~~~---i~~d~lViA  140 (455)
T 1ebd_A           73 ---EN--VTIDFAKVQEWKASVVKKLTGGVEGLLKGNKVEIVKGEAYF---VDANTVRVVNG-DSAQT---YTFKNAIIA  140 (455)
T ss_dssp             ---CS--CEECHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEEESEEEE---EETTEEEEEET-TEEEE---EECSEEEEC
T ss_pred             ---CC--CccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEE---ccCCeEEEEeC-CCcEE---EEeCEEEEe
Confidence               00  00111100000            122345689999998653   35677888877 77 44   999999999


Q ss_pred             CCCChHH
Q psy9141         153 DGAYSGV  159 (379)
Q Consensus       153 dG~~S~v  159 (379)
                      +|..+..
T Consensus       141 TGs~p~~  147 (455)
T 1ebd_A          141 TGSRPIE  147 (455)
T ss_dssp             CCEEECC
T ss_pred             cCCCCCC
Confidence            9987643

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=98.56  E-value=1.6e-07  Score=95.07  Aligned_cols=113  Identities=17%  Similarity=0.211  Sum_probs=74.3

Q ss_pred             cEEEECCChHHHHHHHHHHhC--CCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeEE
Q psy9141           8 SVVIVGGGLVGSLSACMFAKN--QYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARMI   85 (379)
Q Consensus         8 dVvIVGaGpaGl~~A~~La~~--G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~~   85 (379)
                      ||+||||||+|+++|..|++.  |++|+|||+.+.....    .         .....        .+.....+      
T Consensus         3 ~VvIIGgG~AGl~aA~~L~~~~~~~~V~lie~~~~~~~~----~---------~~l~~--------~~~~~~~~------   55 (565)
T 3ntd_A            3 KILIIGGVAGGASAAARARRLSETAEIIMFERGEYVSFA----N---------CGLPY--------HISGEIAQ------   55 (565)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHCSSSEEEEECSSSCSSBC----G---------GGHHH--------HHTSSSCC------
T ss_pred             cEEEECCCHHHHHHHHHHHhhCcCCCEEEEECCCCcccc----c---------cCchH--------HhcCCcCC------
Confidence            899999999999999999998  8899999999754211    1         11100        00000000      


Q ss_pred             EecCCcEEEeeCCCCCcHHHHhcCCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEEEecCCCCh
Q psy9141          86 HGQNGKLREIPYDPVHNQVELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAYS  157 (379)
Q Consensus        86 ~~~~g~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlVV~AdG~~S  157 (379)
                         ...   ......   ....+..+++++++++|++++.++..+++....+|+..+ +.+|.||.|+|...
T Consensus        56 ---~~~---~~~~~~---~~~~~~~~i~~~~~~~V~~id~~~~~v~~~~~~~g~~~~-~~~d~lviAtG~~p  117 (565)
T 3ntd_A           56 ---RSA---LVLQTP---ESFKARFNVEVRVKHEVVAIDRAAKLVTVRRLLDGSEYQ-ESYDTLLLSPGAAP  117 (565)
T ss_dssp             ---GGG---GBCCCH---HHHHHHHCCEEETTEEEEEEETTTTEEEEEETTTCCEEE-EECSEEEECCCEEE
T ss_pred             ---hHH---hhccCH---HHHHHhcCcEEEECCEEEEEECCCCEEEEEecCCCCeEE-EECCEEEECCCCCC
Confidence               000   000111   223333589999999999999888888877532465445 89999999999853

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}

Probab=98.55  E-value=2.5e-07  Score=91.14  Aligned_cols=116  Identities=18%  Similarity=0.193  Sum_probs=73.0

Q ss_pred             CcEEEECCChHHHHHHHHHHhC--CCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeE
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKN--QYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARM   84 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~--G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~   84 (379)
                      +||+|||||++|+++|..|++.  |.+|+|||+.+.....    +.+        ....+  -|....     .....  
T Consensus         1 ~dvvIIGgG~aGl~aA~~l~~~~~g~~V~lie~~~~~~~~----~~~--------~~~~~--~g~~~~-----~~~~~--   59 (452)
T 2cdu_A            1 MKVIVVGCTHAGTFAVKQTIADHPDADVTAYEMNDNISFL----SCG--------IALYL--GKEIKN-----NDPRG--   59 (452)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTCEEEEEESSSCCCBC----GGG--------HHHHH--TTCBGG-----GCGGG--
T ss_pred             CeEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCCcc----ccc--------chhhh--cCCccc-----CCHHH--
Confidence            4899999999999999999998  9999999998743211    100        00000  010000     00000  


Q ss_pred             EEecCCcEEEeeCCCCCcHHHHhcCCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEEEecCCCChH
Q psy9141          85 IHGQNGKLREIPYDPVHNQVELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAYSG  158 (379)
Q Consensus        85 ~~~~~g~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlVV~AdG~~S~  158 (379)
                                +.+. .  ..... ..+++++.+++++.++.+++.+.+....+|+..+ +++|.||.|+|..+.
T Consensus        60 ----------~~~~-~--~~~~~-~~gv~~~~~~~v~~i~~~~~~v~v~~~~~g~~~~-~~~d~lviAtGs~p~  118 (452)
T 2cdu_A           60 ----------LFYS-S--PEELS-NLGANVQMRHQVTNVDPETKTIKVKDLITNEEKT-EAYDKLIMTTGSKPT  118 (452)
T ss_dssp             ----------GBSC-C--HHHHH-HTTCEEEESEEEEEEEGGGTEEEEEETTTCCEEE-EECSEEEECCCEEEC
T ss_pred             ----------hhhc-C--HHHHH-HcCCEEEeCCEEEEEEcCCCEEEEEecCCCceEE-EECCEEEEccCCCcC
Confidence                      0011 1  12222 3589999999999998888887776521333234 999999999997553

>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A

Probab=98.54  E-value=2.9e-07  Score=90.28  Aligned_cols=45  Identities=7%  Similarity=0.075  Sum_probs=38.2

Q ss_pred             CCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEEEecCCCChH
Q psy9141         110 PDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAYSG  158 (379)
Q Consensus       110 ~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlVV~AdG~~S~  158 (379)
                      .|++|+++++|++|..++++++.... +|++   ++||.||.|.|.++.
T Consensus       247 ~G~~i~~~~~V~~I~~~~~~v~~v~~-~g~~---~~ad~VV~a~~~~~~  291 (433)
T 1d5t_A          247 YGGTYMLNKPVDDIIMENGKVVGVKS-EGEV---ARCKQLICDPSYVPD  291 (433)
T ss_dssp             HTCCCBCSCCCCEEEEETTEEEEEEE-TTEE---EECSEEEECGGGCGG
T ss_pred             cCCEEECCCEEEEEEEeCCEEEEEEE-CCeE---EECCEEEECCCCCcc
Confidence            47899999999999988888775445 7877   999999999999874

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*

Probab=98.53  E-value=4.9e-07  Score=89.80  Aligned_cols=35  Identities=20%  Similarity=0.235  Sum_probs=32.4

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHhCCCcEEEEccC
Q psy9141           4 NSKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAR   38 (379)
Q Consensus         4 m~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~   38 (379)
                      +.+|||+||||||+|+++|+.|++.|++|+||||.
T Consensus         7 ~~~~DvvVIGgG~aGl~aA~~la~~G~~V~liEk~   41 (483)
T 3dgh_A            7 SYDYDLIVIGGGSAGLACAKEAVLNGARVACLDFV   41 (483)
T ss_dssp             CCSEEEEEECCSHHHHHHHHHHHHTTCCEEEECCC
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHCCCEEEEEEec
Confidence            35799999999999999999999999999999963

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*

Probab=98.51  E-value=1e-06  Score=84.80  Aligned_cols=102  Identities=17%  Similarity=0.207  Sum_probs=77.7

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeEE
Q psy9141           6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARMI   85 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~~   85 (379)
                      ..+++|||||++|+.+|..|++.|.+|+++|+.+.....          .+.+...+.+                     
T Consensus       145 ~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~----------~~~~~~~~~l---------------------  193 (384)
T 2v3a_A          145 KRRVLLLGAGLIGCEFANDLSSGGYQLDVVAPCEQVMPG----------LLHPAAAKAV---------------------  193 (384)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTT----------TSCHHHHHHH---------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCeEEEEecCcchhhc----------ccCHHHHHHH---------------------
Confidence            458999999999999999999999999999987643210          0111111111                     


Q ss_pred             EecCCcEEEeeCCCCCcHHHHhcCCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEEEecCCCChHHH
Q psy9141          86 HGQNGKLREIPYDPVHNQVELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAYSGVR  160 (379)
Q Consensus        86 ~~~~g~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlVV~AdG~~S~vr  160 (379)
                                        ....+..|++++++++|++++.+++++.+.+. +|++   +++|.||.|+|..+.+.
T Consensus       194 ------------------~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~-~g~~---i~~d~vv~a~G~~p~~~  246 (384)
T 2v3a_A          194 ------------------QAGLEGLGVRFHLGPVLASLKKAGEGLEAHLS-DGEV---IPCDLVVSAVGLRPRTE  246 (384)
T ss_dssp             ------------------HHHHHTTTCEEEESCCEEEEEEETTEEEEEET-TSCE---EEESEEEECSCEEECCH
T ss_pred             ------------------HHHHHHcCCEEEeCCEEEEEEecCCEEEEEEC-CCCE---EECCEEEECcCCCcCHH
Confidence                              11222368999999999999988888888888 8877   99999999999988654

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*

Probab=98.51  E-value=3.4e-07  Score=89.06  Aligned_cols=107  Identities=18%  Similarity=0.250  Sum_probs=70.8

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCc--EEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeE
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKNQYE--VNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARM   84 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~G~~--V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~   84 (379)
                      .+|+|||||++|+++|..|++.|++  |+|+|+.+.....     +.   .++             ..+.........  
T Consensus         3 ~~vvIIGaG~AGl~aA~~L~~~g~~~~V~li~~~~~~~y~-----~~---~l~-------------~~~~~g~~~~~~--   59 (410)
T 3ef6_A            3 THVAIIGNGVGGFTTAQALRAEGFEGRISLIGDEPHLPYD-----RP---SLS-------------KAVLDGSLERPP--   59 (410)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEEECSSSSSBC-----SG---GGG-------------THHHHTSSSSCC--
T ss_pred             CCEEEEcccHHHHHHHHHHHccCcCCeEEEEECCCCCCcC-----Cc---ccc-------------HHHhCCCCCHHH--
Confidence            3899999999999999999999987  9999998754211     10   011             111111001000  


Q ss_pred             EEecCCcEEEeeCCCCCcHHHHhcCCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEEEecCCCCh
Q psy9141          85 IHGQNGKLREIPYDPVHNQVELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAYS  157 (379)
Q Consensus        85 ~~~~~g~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlVV~AdG~~S  157 (379)
                                + +...   .... ..+++++.+++|+.++.+...  +.+. +|++   +.+|.||.|+|...
T Consensus        60 ----------~-~~~~---~~~~-~~~i~~~~~~~v~~id~~~~~--v~~~-~g~~---~~~d~lvlAtG~~p  111 (410)
T 3ef6_A           60 ----------I-LAEA---DWYG-EARIDMLTGPEVTALDVQTRT--ISLD-DGTT---LSADAIVIATGSRA  111 (410)
T ss_dssp             ----------B-SSCT---THHH-HTTCEEEESCCEEEEETTTTE--EEET-TSCE---EECSEEEECCCEEE
T ss_pred             ----------h-cCCH---HHHH-HCCCEEEeCCEEEEEECCCCE--EEEC-CCCE---EECCEEEEccCCcc
Confidence                      0 0011   1122 258999999999999876654  4556 8877   99999999999653

>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}

Probab=98.51  E-value=6.7e-08  Score=90.10  Aligned_cols=38  Identities=18%  Similarity=0.244  Sum_probs=33.1

Q ss_pred             CCCCCCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCC
Q psy9141           1 MKCNSKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEARE   39 (379)
Q Consensus         1 M~~m~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~   39 (379)
                      |++| +|||+||||||||+++|+.|++.|++|+|||+..
T Consensus         2 Mte~-~yDvvIIG~GpAGl~aA~~l~~~g~~V~liE~~~   39 (312)
T 4gcm_A            2 MTEI-DFDIAIIGAGPAGMTAAVYASRANLKTVMIERGI   39 (312)
T ss_dssp             --CC-SEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             CCCC-CCCEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Confidence            5543 6999999999999999999999999999999864

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*

Probab=98.50  E-value=2.9e-07  Score=91.79  Aligned_cols=129  Identities=17%  Similarity=0.191  Sum_probs=73.8

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHhC--CCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCce
Q psy9141           4 NSKKSVVIVGGGLVGSLSACMFAKN--QYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMR   81 (379)
Q Consensus         4 m~~~dVvIVGaGpaGl~~A~~La~~--G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~   81 (379)
                      |..+||+|||||++|+++|..|++.  |.+|+|||+.+.......+-+..+   +........+.               
T Consensus         9 ~~~~~vvIIGgG~AGl~aA~~L~~~~~g~~V~lie~~~~~~y~r~~lsk~l---~~~~~~~~~~~---------------   70 (493)
T 1m6i_A            9 PSHVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPELPYMRPPLSKEL---WFSDDPNVTKT---------------   70 (493)
T ss_dssp             CSEEEEEEESCSHHHHHHHHHHHHHSTTCEEEEEESSSSCCBCSGGGGTGG---GCC--CTHHHH---------------
T ss_pred             CCcCCEEEECChHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCCCCCCCHHh---hcCCccchhhc---------------
Confidence            4568999999999999999999887  889999999875421100001100   00000000000               


Q ss_pred             eeEEEecCCcEEEeeCCC---CCcHHHH--hcCCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEEEecCCCC
Q psy9141          82 ARMIHGQNGKLREIPYDP---VHNQVEL--EQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAY  156 (379)
Q Consensus        82 ~~~~~~~~g~~~~~~~~~---~~~~~~~--~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlVV~AdG~~  156 (379)
                       ..+....+....+.+..   ......+  ....+++++.+++|++++.+...  |++. +|++   +.+|.||.|+|..
T Consensus        71 -~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~~~g~~v~~id~~~~~--V~~~-~g~~---i~yd~lviATGs~  143 (493)
T 1m6i_A           71 -LRFKQWNGKERSIYFQPPSFYVSAQDLPHIENGGVAVLTGKKVVQLDVRDNM--VKLN-DGSQ---ITYEKCLIATGGT  143 (493)
T ss_dssp             -CEEECTTSCEEESBSSCGGGSBCTTTTTTSTTCEEEEEETCCEEEEEGGGTE--EEET-TSCE---EEEEEEEECCCEE
T ss_pred             -ccccccccccccccccchHhhcchhhhhhhhcCCeEEEcCCEEEEEECCCCE--EEEC-CCCE---EECCEEEECCCCC
Confidence             01111111100100100   0000011  12358999999999999876654  5566 8877   9999999999976


Q ss_pred             h
Q psy9141         157 S  157 (379)
Q Consensus       157 S  157 (379)
                      .
T Consensus       144 p  144 (493)
T 1m6i_A          144 P  144 (493)
T ss_dssp             E
T ss_pred             C
Confidence            5

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}

Probab=98.50  E-value=1.5e-08  Score=100.38  Aligned_cols=132  Identities=16%  Similarity=0.166  Sum_probs=74.2

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHh----CCCCce
Q psy9141           6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLA----HGIPMR   81 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~----~~~~~~   81 (379)
                      ++||+||||||+|+++|..|++.|++|+|||+.+...      |...+... ..+..++....+++.+..    .+.+..
T Consensus         2 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~~~~G------G~~~~~g~-~psk~l~~~~~~~~~~~~~~~~~g~~~~   74 (468)
T 2qae_A            2 PYDVVVIGGGPGGYVASIKAAQLGMKTACVEKRGALG------GTCLNVGC-IPSKALLHATHLYHDAHANFARYGLMGG   74 (468)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSS------HHHHHHSH-HHHHHHHHHHHHHHHHHHTHHHHTEECG
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcC------CcCCCcCc-HhHHHHHHHHHHHHHHHHHHHhcCcccC
Confidence            4799999999999999999999999999999986542      11100000 112222222112222211    111110


Q ss_pred             eeEEEecCCcEEEeeCCCCCc----------H--HHHhcCCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEE
Q psy9141          82 ARMIHGQNGKLREIPYDPVHN----------Q--VELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLI  149 (379)
Q Consensus        82 ~~~~~~~~g~~~~~~~~~~~~----------~--~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlV  149 (379)
                            ..   ...++.....          .  ....+..+++++.++.+. +  +.+.+++.+. +|+..+ +++|.|
T Consensus        75 ------~~---~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~g~~~~-i--~~~~~~v~~~-~G~~~~-~~~d~l  140 (468)
T 2qae_A           75 ------EG---VTMDSAKMQQQKERAVKGLTGGVEYLFKKNKVTYYKGEGSF-E--TAHSIRVNGL-DGKQEM-LETKKT  140 (468)
T ss_dssp             ------GG---CEECHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEEE-E--ETTEEEEEET-TSCEEE-EEEEEE
T ss_pred             ------CC---CccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEE-e--eCCEEEEEec-CCceEE-EEcCEE
Confidence                  00   0001100000          0  122223589999887542 3  4567888877 883333 999999


Q ss_pred             EecCCCChH
Q psy9141         150 IGADGAYSG  158 (379)
Q Consensus       150 V~AdG~~S~  158 (379)
                      |.|+|....
T Consensus       141 viAtG~~p~  149 (468)
T 2qae_A          141 IIATGSEPT  149 (468)
T ss_dssp             EECCCEEEC
T ss_pred             EECCCCCcC
Confidence            999997653

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*

Probab=98.48  E-value=7.8e-07  Score=87.63  Aligned_cols=100  Identities=14%  Similarity=0.157  Sum_probs=76.6

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeEEE
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARMIH   86 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~   86 (379)
                      .+|+|||||++|+.+|..|++.|.+|+|+|+.+.....           ..+...+.+.                     
T Consensus       168 ~~vvIiGgG~~g~e~A~~l~~~g~~V~lv~~~~~~l~~-----------~~~~~~~~l~---------------------  215 (455)
T 2yqu_A          168 KRLIVVGGGVIGLELGVVWHRLGAEVIVLEYMDRILPT-----------MDLEVSRAAE---------------------  215 (455)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTT-----------SCHHHHHHHH---------------------
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCEEEEEecCCccccc-----------cCHHHHHHHH---------------------
Confidence            57999999999999999999999999999988643210           1111111110                     


Q ss_pred             ecCCcEEEeeCCCCCcHHHHhcCCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEEEecCCCChHHH
Q psy9141          87 GQNGKLREIPYDPVHNQVELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAYSGVR  160 (379)
Q Consensus        87 ~~~g~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlVV~AdG~~S~vr  160 (379)
                                       ..+. ..|++++++++|++++.+++++.+++. +|++   +++|.||.|+|..+.+.
T Consensus       216 -----------------~~l~-~~Gv~i~~~~~V~~i~~~~~~v~v~~~-~g~~---i~~D~vv~A~G~~p~~~  267 (455)
T 2yqu_A          216 -----------------RVFK-KQGLTIRTGVRVTAVVPEAKGARVELE-GGEV---LEADRVLVAVGRRPYTE  267 (455)
T ss_dssp             -----------------HHHH-HHTCEEECSCCEEEEEEETTEEEEEET-TSCE---EEESEEEECSCEEECCT
T ss_pred             -----------------HHHH-HCCCEEEECCEEEEEEEeCCEEEEEEC-CCeE---EEcCEEEECcCCCcCCC
Confidence                             1122 248999999999999988888888887 8877   99999999999988653

>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=98.48  E-value=2e-07  Score=93.01  Aligned_cols=48  Identities=15%  Similarity=0.088  Sum_probs=38.7

Q ss_pred             cCCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEEEecCCCChHH
Q psy9141         108 QYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAYSGV  159 (379)
Q Consensus       108 ~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlVV~AdG~~S~v  159 (379)
                      +..|++++++++|++++.++....+.+. +|++   +++|+||.|.|..+.+
T Consensus       268 ~~~GV~v~~~~~v~~i~~~~~v~~v~~~-~g~~---i~aD~Vv~a~G~~p~~  315 (493)
T 1y56_A          268 ERWGIDYVHIPNVKRVEGNEKVERVIDM-NNHE---YKVDALIFADGRRPDI  315 (493)
T ss_dssp             HHHTCEEEECSSEEEEECSSSCCEEEET-TCCE---EECSEEEECCCEEECC
T ss_pred             HhCCcEEEeCCeeEEEecCCceEEEEeC-CCeE---EEeCEEEECCCcCcCc
Confidence            3458999999999999876544446677 8877   9999999999988754

>3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A*

Probab=98.47  E-value=4e-07  Score=89.12  Aligned_cols=104  Identities=17%  Similarity=0.220  Sum_probs=68.0

Q ss_pred             cEEEECCChHHHHHHHHHHhCC--CcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeEE
Q psy9141           8 SVVIVGGGLVGSLSACMFAKNQ--YEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARMI   85 (379)
Q Consensus         8 dVvIVGaGpaGl~~A~~La~~G--~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~~   85 (379)
                      +|||||||++|+++|..|++.+  ++|+|||+++...             ..|..          ..+..........  
T Consensus         4 ~VvIIGgG~aGl~aA~~L~~~~~~~~VtlI~~~~~~~-------------~~p~l----------~~v~~g~~~~~~i--   58 (430)
T 3hyw_A            4 HVVVIGGGVGGIATAYNLRNLMPDLKITLISDRPYFG-------------FTPAF----------PHLAMGWRKFEDI--   58 (430)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHCTTCEEEEECSSSEEE-------------CGGGH----------HHHHHTCSCGGGS--
T ss_pred             cEEEECCCHHHHHHHHHHhccCcCCeEEEEcCCCCCc-------------cCccH----------HHHhcCCCCHHHh--
Confidence            7999999999999999999865  7999999876321             11111          1111111111111  


Q ss_pred             EecCCcEEEeeCCCCCcHHHHhcCCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEEEecCCCCh
Q psy9141          86 HGQNGKLREIPYDPVHNQVELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAYS  157 (379)
Q Consensus        86 ~~~~g~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlVV~AdG~~S  157 (379)
                              ..++..      ..+..+++++.+ +|++|+.+...|  +++ +|++   +.+|+||.|+|...
T Consensus        59 --------~~~~~~------~~~~~gv~~i~~-~v~~Id~~~~~V--~~~-~g~~---i~YD~LViAtG~~~  109 (430)
T 3hyw_A           59 --------SVPLAP------LLPKFNIEFINE-KAESIDPDANTV--TTQ-SGKK---IEYDYLVIATGPKL  109 (430)
T ss_dssp             --------EEESTT------TGGGGTEEEECS-CEEEEETTTTEE--EET-TCCE---EECSEEEECCCCEE
T ss_pred             --------hhcHHH------HHHHCCcEEEEe-EEEEEECCCCEE--EEC-CCCE---EECCEEEEeCCCCc
Confidence                    112222      122248888866 799998777654  456 8887   99999999999753

>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}

Probab=98.46  E-value=4.4e-07  Score=91.39  Aligned_cols=52  Identities=8%  Similarity=-0.080  Sum_probs=45.1

Q ss_pred             hcCCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEEEecCCCChHHHHH
Q psy9141         107 EQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAYSGVRKC  162 (379)
Q Consensus       107 ~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlVV~AdG~~S~vr~~  162 (379)
                      .+..+++++.++.++.++..++.+.+.+. ++++   +.+|.|+.|.|+...+-..
T Consensus       273 l~~~gi~~~~~~~v~~~~~~~~~~~v~~~-~~~~---~~~D~vLvAvGR~Pnt~~L  324 (542)
T 4b1b_A          273 MEEQGVMFKNGILPKKLTKMDDKILVEFS-DKTS---ELYDTVLYAIGRKGDIDGL  324 (542)
T ss_dssp             HHHTTCEEEETCCEEEEEEETTEEEEEET-TSCE---EEESEEEECSCEEESCGGG
T ss_pred             HHhhcceeecceEEEEEEecCCeEEEEEc-CCCe---EEEEEEEEcccccCCcccc
Confidence            34469999999999999999999999998 8877   8899999999999876543

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*

Probab=98.46  E-value=1.1e-07  Score=93.89  Aligned_cols=130  Identities=13%  Similarity=0.127  Sum_probs=73.1

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeEE
Q psy9141           6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARMI   85 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~~   85 (379)
                      ++||+||||||+|+++|..|++.|++|+|||+.+...      |...+... ..+..++....+++.+...   ..++..
T Consensus         1 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~G------G~~~~~g~-~p~k~l~~~~~~~~~~~~~---~~g~~~   70 (455)
T 2yqu_A            1 MYDLLVIGAGPGGYVAAIRAAQLGMKVGVVEKEKALG------GTCLRVGC-IPSKALLETTERIYEAKKG---LLGAKV   70 (455)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSS------HHHHHHSH-HHHHHHHHHHHHHHHHHHC---CTTEEE
T ss_pred             CCCEEEECCChhHHHHHHHHHHCCCeEEEEeCCCCCC------Cccceecc-hhHHHHHHHHHHHHHHhhh---cCCccc
Confidence            3799999999999999999999999999999986442      21110000 1233333333334443321   111111


Q ss_pred             EecCCcEEEeeCCCCCcH------------HHHhcCCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEEEecC
Q psy9141          86 HGQNGKLREIPYDPVHNQ------------VELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGAD  153 (379)
Q Consensus        86 ~~~~g~~~~~~~~~~~~~------------~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlVV~Ad  153 (379)
                         ..  ...++......            ....+..+++++.++.+.   .+.+.+++.+  +|++   +.+|.||.|+
T Consensus        71 ---~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~g~~~~---i~~~~~~v~~--~g~~---~~~d~lviAt  137 (455)
T 2yqu_A           71 ---KG--VELDLPALMAHKDKVVQANTQGVEFLFKKNGIARHQGTARF---LSERKVLVEE--TGEE---LEARYILIAT  137 (455)
T ss_dssp             ---CC--EEECHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEESCEEE---SSSSEEEETT--TCCE---EEEEEEEECC
T ss_pred             ---CC--CccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEE---ecCCeEEEee--CCEE---EEecEEEECC
Confidence               00  01111100000            112223589999887542   3455565543  4555   8999999999


Q ss_pred             CCChH
Q psy9141         154 GAYSG  158 (379)
Q Consensus       154 G~~S~  158 (379)
                      |..+.
T Consensus       138 G~~p~  142 (455)
T 2yqu_A          138 GSAPL  142 (455)
T ss_dssp             CEEEC
T ss_pred             CCCCC
Confidence            97653

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.44  E-value=5.1e-07  Score=86.53  Aligned_cols=105  Identities=22%  Similarity=0.246  Sum_probs=68.4

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeEEE
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARMIH   86 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~   86 (379)
                      .||+||||||+|+++|..|++.| +|+|||+.+....     .+.   .+ +   ..+.  |.        .....    
T Consensus         9 ~~vvIIGgG~AGl~aA~~l~~~g-~V~lie~~~~~~~-----~~~---~l-~---~~~~--g~--------~~~~~----   61 (367)
T 1xhc_A            9 SKVVIVGNGPGGFELAKQLSQTY-EVTVIDKEPVPYY-----SKP---ML-S---HYIA--GF--------IPRNR----   61 (367)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTTS-EEEEECSSSSCCC-----CST---TH-H---HHHT--TS--------SCGGG----
T ss_pred             CcEEEECCcHHHHHHHHHHhhcC-CEEEEECCCCCcc-----ccc---hh-H---HHHh--CC--------CCHHH----
Confidence            59999999999999999999999 9999999875321     110   01 1   0110  10        00000    


Q ss_pred             ecCCcEEEeeCCCCCcHHHHhcCCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEEEecCCCCh
Q psy9141          87 GQNGKLREIPYDPVHNQVELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAYS  157 (379)
Q Consensus        87 ~~~g~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlVV~AdG~~S  157 (379)
                              + ....   ....+..+++++.+++|+.++.+...+  + . +|++   +++|.||.|+|...
T Consensus        62 --------~-~~~~---~~~~~~~~v~~~~g~~v~~id~~~~~V--~-~-~g~~---~~~d~lViATGs~p  113 (367)
T 1xhc_A           62 --------L-FPYS---LDWYRKRGIEIRLAEEAKLIDRGRKVV--I-T-EKGE---VPYDTLVLATGARA  113 (367)
T ss_dssp             --------G-CSSC---HHHHHHHTEEEECSCCEEEEETTTTEE--E-E-SSCE---EECSEEEECCCEEE
T ss_pred             --------h-ccCC---HHHHHhCCcEEEECCEEEEEECCCCEE--E-E-CCcE---EECCEEEECCCCCC
Confidence                    0 0001   112223589999999999998765443  3 4 7776   99999999999754

>3fpz_A Thiazole biosynthetic enzyme; FAD, mitochondrion, N thiamine biosynthesis, transit peptide, biosynthetic protei; HET: AHZ; 1.82A {Saccharomyces cerevisiae}

Probab=98.41  E-value=7.8e-08  Score=90.53  Aligned_cols=38  Identities=29%  Similarity=0.367  Sum_probs=33.8

Q ss_pred             CCCcEEEECCChHHHHHHHHHHh--CCCcEEEEccCCCCC
Q psy9141           5 SKKSVVIVGGGLVGSLSACMFAK--NQYEVNLYEAREDIR   42 (379)
Q Consensus         5 ~~~dVvIVGaGpaGl~~A~~La~--~G~~V~viE~~~~~~   42 (379)
                      .++||+||||||+||++|+.|++  .|++|+|||+.+.+.
T Consensus        64 ~~~DV~IIGaGPAGlsAA~~la~~r~G~~V~viEk~~~~G  103 (326)
T 3fpz_A           64 AVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPG  103 (326)
T ss_dssp             TEESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCC
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEECCCCCC
Confidence            35799999999999999999975  599999999987664

>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A*

Probab=98.40  E-value=2.7e-07  Score=87.96  Aligned_cols=37  Identities=32%  Similarity=0.542  Sum_probs=34.1

Q ss_pred             CCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCC
Q psy9141           5 SKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDI   41 (379)
Q Consensus         5 ~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~   41 (379)
                      +++||+|||||++|+++|+.|+++|++|+|+|+....
T Consensus         5 ~~~dVvVIG~Gi~Gls~A~~La~~G~~V~vle~~~~~   41 (363)
T 1c0p_A            5 SQKRVVVLGSGVIGLSSALILARKGYSVHILARDLPE   41 (363)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSCTT
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhCCCEEEEEeccCCC
Confidence            4689999999999999999999999999999998644

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*

Probab=98.37  E-value=9e-07  Score=85.17  Aligned_cols=110  Identities=16%  Similarity=0.137  Sum_probs=67.4

Q ss_pred             CCCcEEEECCChHHHHHHHHHHhCC--CcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCcee
Q psy9141           5 SKKSVVIVGGGLVGSLSACMFAKNQ--YEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRA   82 (379)
Q Consensus         5 ~~~dVvIVGaGpaGl~~A~~La~~G--~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~   82 (379)
                      .++||+||||||+|+++|..|++.|  .+|+|+|+.+....     .+.   .++.              ..........
T Consensus         3 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~V~lie~~~g~~~-----~~~---~l~~--------------~~~~~~~~~~   60 (384)
T 2v3a_A            3 ERAPLVIIGTGLAGYNLAREWRKLDGETPLLMITADDGRSY-----SKP---MLST--------------GFSKNKDADG   60 (384)
T ss_dssp             -CCCEEEECCSHHHHHHHHHHHTTCSSSCEEEECSSCCCEE-----CGG---GGGG--------------TTTTTCCHHH
T ss_pred             CCCcEEEECChHHHHHHHHHHHhhCCCCCEEEEECCCCCcc-----Ccc---cccH--------------HHhCCCCHHH
Confidence            3589999999999999999999999  46899998752110     110   0000              0000000000


Q ss_pred             eEEEecCCcEEEeeCCCCCcHHHHhcCCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEEEecCCCChH
Q psy9141          83 RMIHGQNGKLREIPYDPVHNQVELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAYSG  158 (379)
Q Consensus        83 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlVV~AdG~~S~  158 (379)
                      .         ..   ..   .....+..+++++.+++++.++.++..++  +. + .+   +.+|.||.|+|....
T Consensus        61 ~---------~~---~~---~~~~~~~~~v~~~~~~~v~~i~~~~~~v~--~~-~-~~---~~~d~lviAtG~~p~  114 (384)
T 2v3a_A           61 L---------AM---AE---PGAMAEQLNARILTHTRVTGIDPGHQRIW--IG-E-EE---VRYRDLVLAWGAEPI  114 (384)
T ss_dssp             H---------EE---EC---HHHHHHHTTCEEECSCCCCEEEGGGTEEE--ET-T-EE---EECSEEEECCCEEEC
T ss_pred             h---------hc---cC---HHHHHHhCCcEEEeCCEEEEEECCCCEEE--EC-C-cE---EECCEEEEeCCCCcC
Confidence            0         00   00   02222335899999999999887655444  44 4 34   899999999998653

>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*

Probab=98.36  E-value=1.7e-06  Score=84.94  Aligned_cols=113  Identities=14%  Similarity=0.220  Sum_probs=72.3

Q ss_pred             cEEEECCChHHHHHHHHHHhCC--CcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeEE
Q psy9141           8 SVVIVGGGLVGSLSACMFAKNQ--YEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARMI   85 (379)
Q Consensus         8 dVvIVGaGpaGl~~A~~La~~G--~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~~   85 (379)
                      +|+||||||+|+++|..|++.|  .+|+|||+.+....     ++.   .+ +             ........      
T Consensus         2 KVvIIG~G~AGl~aA~~l~~~g~~~~V~lie~~~~~~~-----~~~---~l-~-------------~~~~~~~~------   53 (437)
T 4eqs_A            2 KIVVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMSF-----ANC---AL-P-------------YVIGEVVE------   53 (437)
T ss_dssp             CEEEECCSTTHHHHHHHHHHHCSSSCEEEEESSSCSSB-----CGG---GH-H-------------HHHTTSSC------
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCCCcEEEEeCCCCCCC-----Ccc---hh-H-------------HHHcCCcc------
Confidence            6999999999999999999988  47999998764321     110   11 0             01000000      


Q ss_pred             EecCCcEEEeeCCCCCcHHHHhcCCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEEEecCCCCh
Q psy9141          86 HGQNGKLREIPYDPVHNQVELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAYS  157 (379)
Q Consensus        86 ~~~~g~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlVV~AdG~~S  157 (379)
                          .....+  ..  ..+...+..+++++.+++|+.++.+...+.+....+++..+ +.+|.||.|+|...
T Consensus        54 ----~~~~~~--~~--~~~~~~~~~~i~~~~~~~V~~id~~~~~~~~~~~~~~~~~~-~~yd~lVIATGs~p  116 (437)
T 4eqs_A           54 ----DRRYAL--AY--TPEKFYDRKQITVKTYHEVIAINDERQTVSVLNRKTNEQFE-ESYDKLILSPGASA  116 (437)
T ss_dssp             ----CGGGTB--CC--CHHHHHHHHCCEEEETEEEEEEETTTTEEEEEETTTTEEEE-EECSEEEECCCEEE
T ss_pred             ----chhhhh--hc--CHHHHHHhcCCEEEeCCeEEEEEccCcEEEEEeccCCceEE-EEcCEEEECCCCcc
Confidence                000000  00  11223333589999999999999888888776542444445 89999999999764

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*

Probab=98.35  E-value=1.2e-06  Score=87.16  Aligned_cols=35  Identities=23%  Similarity=0.232  Sum_probs=32.6

Q ss_pred             CCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCC
Q psy9141           5 SKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEARE   39 (379)
Q Consensus         5 ~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~   39 (379)
                      .+|||+||||||+|+++|..|++.|++|+|||+.+
T Consensus         5 ~~~DvvVIG~G~aGl~aA~~la~~G~~V~liEk~~   39 (488)
T 3dgz_A            5 QSFDLLVIGGGSGGLACAKEAAQLGKKVAVADYVE   39 (488)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCEEEECCCC
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhCCCeEEEEEecc
Confidence            46899999999999999999999999999999854

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*

Probab=98.35  E-value=3.3e-06  Score=83.43  Aligned_cols=99  Identities=16%  Similarity=0.177  Sum_probs=75.9

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeEEE
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARMIH   86 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~   86 (379)
                      .+|+|||||++|+-+|..|++.|.+|+++|+.+....           .+.+...+.+                      
T Consensus       167 ~~vvVvGgG~~g~e~A~~l~~~G~~Vtlv~~~~~~l~-----------~~~~~~~~~l----------------------  213 (463)
T 2r9z_A          167 KRVAIIGAGYIGIELAGLLRSFGSEVTVVALEDRLLF-----------QFDPLLSATL----------------------  213 (463)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSST-----------TSCHHHHHHH----------------------
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCcccc-----------ccCHHHHHHH----------------------
Confidence            4799999999999999999999999999998864321           0112111111                      


Q ss_pred             ecCCcEEEeeCCCCCcHHHHhcCCCCeEEeCceEEEEEecCCeEEEEEccCCc-eeEEEeecEEEecCCCChHH
Q psy9141          87 GQNGKLREIPYDPVHNQVELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNS-ETKITDNQLIIGADGAYSGV  159 (379)
Q Consensus        87 ~~~g~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~-~~~~i~adlVV~AdG~~S~v  159 (379)
                                      ...+. ..|++++++++|++++.+++++.+++. +|+ +   +++|.||.|+|..+.+
T Consensus       214 ----------------~~~l~-~~gv~i~~~~~v~~i~~~~~~~~v~~~-~G~~~---i~~D~vv~a~G~~p~~  266 (463)
T 2r9z_A          214 ----------------AENMH-AQGIETHLEFAVAALERDAQGTTLVAQ-DGTRL---EGFDSVIWAVGRAPNT  266 (463)
T ss_dssp             ----------------HHHHH-HTTCEEESSCCEEEEEEETTEEEEEET-TCCEE---EEESEEEECSCEEESC
T ss_pred             ----------------HHHHH-HCCCEEEeCCEEEEEEEeCCeEEEEEe-CCcEE---EEcCEEEECCCCCcCC
Confidence                            01122 258999999999999987777888888 888 5   9999999999998765

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*

Probab=98.34  E-value=1.3e-06  Score=86.37  Aligned_cols=103  Identities=15%  Similarity=0.141  Sum_probs=75.3

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeEEE
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARMIH   86 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~   86 (379)
                      .+|+|||||++|+-+|..|++.|.+|+|+|+.+.....           +.+...+.+                      
T Consensus       170 ~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~-----------~~~~~~~~l----------------------  216 (464)
T 2eq6_A          170 KRLLVIGGGAVGLELGQVYRRLGAEVTLIEYMPEILPQ-----------GDPETAALL----------------------  216 (464)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTT-----------SCHHHHHHH----------------------
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEEEcCCccccc-----------cCHHHHHHH----------------------
Confidence            58999999999999999999999999999988643210           111111110                      


Q ss_pred             ecCCcEEEeeCCCCCcHHHHhcCCCCeEEeCceEEEEEecCCeEEEEEccC--CceeEEEeecEEEecCCCChHHH
Q psy9141          87 GQNGKLREIPYDPVHNQVELEQYPDCNIYFQHKLINLDVNSGNVTFYRTED--NSETKITDNQLIIGADGAYSGVR  160 (379)
Q Consensus        87 ~~~g~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~--G~~~~~i~adlVV~AdG~~S~vr  160 (379)
                                       ....+..|++++++++|++++.+++++.+++..+  |+..+ +++|+||.|+|..+.+.
T Consensus       217 -----------------~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~-i~~D~vv~a~G~~p~~~  274 (464)
T 2eq6_A          217 -----------------RRALEKEGIRVRTKTKAVGYEKKKDGLHVRLEPAEGGEGEE-VVVDKVLVAVGRKPRTE  274 (464)
T ss_dssp             -----------------HHHHHHTTCEEECSEEEEEEEEETTEEEEEEEETTCCSCEE-EEESEEEECSCEEESCT
T ss_pred             -----------------HHHHHhcCCEEEcCCEEEEEEEeCCEEEEEEeecCCCceeE-EEcCEEEECCCcccCCC
Confidence                             1112225899999999999998877777776424  76334 99999999999987654

>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis}

Probab=98.33  E-value=3.7e-07  Score=88.51  Aligned_cols=70  Identities=20%  Similarity=0.215  Sum_probs=47.3

Q ss_pred             CCCCC-CCcEEEECCChHHHHHHHHHHhC-CCcEEEEccCCCCCCCC----CC-CCcccc-------cccCHHHHHHHHH
Q psy9141           1 MKCNS-KKSVVIVGGGLVGSLSACMFAKN-QYEVNLYEAREDIRNSG----LS-EGKSIN-------LALSVRGREALRR   66 (379)
Q Consensus         1 M~~m~-~~dVvIVGaGpaGl~~A~~La~~-G~~V~viE~~~~~~~~~----~~-~g~~i~-------~al~~~~~~~l~~   66 (379)
                      |..|+ ++||+|||||++||++|+.|++. |++|+|+|+++......    .. +|..++       ..-.+...+++++
T Consensus         1 m~~m~~~~~v~IiGaG~~Gl~aA~~L~~~~g~~v~v~E~~~~~GG~~~~~~~~~~g~~~~~~G~~~~~~~~~~~~~~~~~   80 (399)
T 1v0j_A            1 MQPMTARFDLFVVGSGFFGLTIAERVATQLDKRVLVLERRPHIGGNAYSEAEPQTGIEVHKYGAHLFHTSNKRVWDYVRQ   80 (399)
T ss_dssp             ---CCCSCSEEEECCSHHHHHHHHHHHHHSCCCEEEECSSSSSSGGGCEEECTTTCCEEETTSCCCEEESCHHHHHHHTT
T ss_pred             CCcccccCCEEEECCCHHHHHHHHHHHHhCCCCEEEEeCCCCCCCeeeeccccCCCEEEEeCCCcEEcCCcHHHHHHHHH
Confidence            55453 78999999999999999999999 99999999997553210    00 121110       1124667778888


Q ss_pred             CCCh
Q psy9141          67 IGLE   70 (379)
Q Consensus        67 lGl~   70 (379)
                      +|++
T Consensus        81 ~g~~   84 (399)
T 1v0j_A           81 FTDF   84 (399)
T ss_dssp             TCCB
T ss_pred             hhhh
Confidence            7764

>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A*

Probab=98.33  E-value=6.3e-07  Score=87.93  Aligned_cols=66  Identities=24%  Similarity=0.291  Sum_probs=47.3

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCC---CCC------cccccccCHHHHHHHHHCCC
Q psy9141           4 NSKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGL---SEG------KSINLALSVRGREALRRIGL   69 (379)
Q Consensus         4 m~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~---~~g------~~i~~al~~~~~~~l~~lGl   69 (379)
                      |.++||+|||||++||++|+.|++.|++|+|+|+++.......   ..|      ........+...++++++|+
T Consensus         3 ~~~~~v~iiG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~GG~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~~g~   77 (453)
T 2yg5_A            3 TLQRDVAIVGAGPSGLAAATALRKAGLSVAVIEARDRVGGRTWTDTIDGAVLEIGGQWVSPDQTALISLLDELGL   77 (453)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTTCCEEEETTEEEECSCCCBCTTCHHHHHHHHHTTC
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHHCCCcEEEEECCCCCCCceeccccCCceeccCCeEecCccHHHHHHHHHcCC
Confidence            4568999999999999999999999999999999876542210   011      11100114567788888886

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*

Probab=98.32  E-value=1.7e-06  Score=85.16  Aligned_cols=100  Identities=15%  Similarity=0.094  Sum_probs=75.1

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeEEE
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARMIH   86 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~   86 (379)
                      .+|+|||||++|+-+|..|++.|.+|+|+|+.+....           .+.+...+.+.                     
T Consensus       168 ~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~-----------~~~~~~~~~l~---------------------  215 (450)
T 1ges_A          168 ERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDAPLP-----------SFDPMISETLV---------------------  215 (450)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSST-----------TSCHHHHHHHH---------------------
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCEEEEEEeCCchhh-----------hhhHHHHHHHH---------------------
Confidence            5899999999999999999999999999998764321           12222111110                     


Q ss_pred             ecCCcEEEeeCCCCCcHHHHhcCCCCeEEeCceEEEEEecCCe-EEEEEccCCceeEEEeecEEEecCCCChHHH
Q psy9141          87 GQNGKLREIPYDPVHNQVELEQYPDCNIYFQHKLINLDVNSGN-VTFYRTEDNSETKITDNQLIIGADGAYSGVR  160 (379)
Q Consensus        87 ~~~g~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~-v~v~~~~~G~~~~~i~adlVV~AdG~~S~vr  160 (379)
                                       ..+. ..|++++++++|++++.++++ +.+++. +|++   +++|.||.|+|..+.+.
T Consensus       216 -----------------~~l~-~~Gv~i~~~~~v~~i~~~~~~~~~v~~~-~g~~---i~~D~vv~a~G~~p~~~  268 (450)
T 1ges_A          216 -----------------EVMN-AEGPQLHTNAIPKAVVKNTDGSLTLELE-DGRS---ETVDCLIWAIGREPAND  268 (450)
T ss_dssp             -----------------HHHH-HHSCEEECSCCEEEEEECTTSCEEEEET-TSCE---EEESEEEECSCEEESCT
T ss_pred             -----------------HHHH-HCCCEEEeCCEEEEEEEeCCcEEEEEEC-CCcE---EEcCEEEECCCCCcCCC
Confidence                             1111 248999999999999876544 778888 8876   99999999999988654

>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G*

Probab=98.30  E-value=5.9e-07  Score=88.57  Aligned_cols=38  Identities=11%  Similarity=0.294  Sum_probs=35.5

Q ss_pred             CCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCC
Q psy9141           5 SKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIR   42 (379)
Q Consensus         5 ~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~   42 (379)
                      .++||+|||||++||++|+.|++.|++|+|+|+++.+.
T Consensus        10 ~~~dvvVIGaG~~GL~aA~~La~~G~~V~vlE~~~~~G   47 (453)
T 2bcg_G           10 TDYDVIVLGTGITECILSGLLSVDGKKVLHIDKQDHYG   47 (453)
T ss_dssp             CBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSC
T ss_pred             ccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCC
Confidence            46899999999999999999999999999999998765

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.25  E-value=8.6e-06  Score=80.10  Aligned_cols=103  Identities=16%  Similarity=0.235  Sum_probs=73.7

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeEE
Q psy9141           6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARMI   85 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~~   85 (379)
                      ..+|+|||||++|+-+|..|++.|.+|+|+|+.+.....           +.+...+.+.                    
T Consensus       170 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~-----------~~~~~~~~l~--------------------  218 (455)
T 1ebd_A          170 PKSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEILSG-----------FEKQMAAIIK--------------------  218 (455)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTT-----------SCHHHHHHHH--------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCccccc-----------cCHHHHHHHH--------------------
Confidence            358999999999999999999999999999988643210           1111111110                    


Q ss_pred             EecCCcEEEeeCCCCCcHHHHhcCCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEEEecCCCChHH
Q psy9141          86 HGQNGKLREIPYDPVHNQVELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAYSGV  159 (379)
Q Consensus        86 ~~~~g~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlVV~AdG~~S~v  159 (379)
                                        ..+. ..|++++++++|++++.+++++.+.+..+|+..+ +++|.||.|.|..+.+
T Consensus       219 ------------------~~l~-~~gv~i~~~~~v~~i~~~~~~~~v~~~~~g~~~~-~~~D~vv~a~G~~p~~  272 (455)
T 1ebd_A          219 ------------------KRLK-KKGVEVVTNALAKGAEEREDGVTVTYEANGETKT-IDADYVLVTVGRRPNT  272 (455)
T ss_dssp             ------------------HHHH-HTTCEEEESEEEEEEEEETTEEEEEEEETTEEEE-EEESEEEECSCEEESC
T ss_pred             ------------------HHHH-HCCCEEEeCCEEEEEEEeCCeEEEEEEeCCceeE-EEcCEEEECcCCCccc
Confidence                              1122 2589999999999999877777766532343334 9999999999988754

>3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding, oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti}

Probab=98.23  E-value=1.1e-06  Score=88.03  Aligned_cols=54  Identities=11%  Similarity=0.118  Sum_probs=39.8

Q ss_pred             HhcCCCCeEEeCceEEEEEecCCeEE-EEEccCCceeEEEeecEEEecCCCChHHH
Q psy9141         106 LEQYPDCNIYFQHKLINLDVNSGNVT-FYRTEDNSETKITDNQLIIGADGAYSGVR  160 (379)
Q Consensus       106 ~~~~~gv~i~~~~~v~~i~~~~~~v~-v~~~~~G~~~~~i~adlVV~AdG~~S~vr  160 (379)
                      ....+|.+|..++.|+.+..+++.++ +.....+...+ +.|+-||.|.|+...-+
T Consensus       220 ~~~r~nl~v~~~~~v~~i~~~~~~a~gv~~~~~~~~~~-~~a~~VILsAGai~SP~  274 (526)
T 3t37_A          220 VRGRKNLTILTGSRVRRLKLEGNQVRSLEVVGRQGSAE-VFADQIVLCAGALESPA  274 (526)
T ss_dssp             HHTCTTEEEECSCEEEEEEEETTEEEEEEEEETTEEEE-EEEEEEEECSHHHHHHH
T ss_pred             ccCCCCeEEEeCCEEEEEEecCCeEEEEEEEecCceEE-EeecceEEcccccCCcc
Confidence            44567999999999999999887654 33321444455 89999999999765444

>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A*

Probab=98.22  E-value=6e-07  Score=89.88  Aligned_cols=39  Identities=31%  Similarity=0.537  Sum_probs=35.6

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHhCC-CcEEEEccCCCCC
Q psy9141           4 NSKKSVVIVGGGLVGSLSACMFAKNQ-YEVNLYEAREDIR   42 (379)
Q Consensus         4 m~~~dVvIVGaGpaGl~~A~~La~~G-~~V~viE~~~~~~   42 (379)
                      |+++||+|||||++||++|+.|++.| ++|+|+|+++.+.
T Consensus         6 ~~~~~VvIIGaG~aGL~AA~~L~~~G~~~V~VlEa~~riG   45 (516)
T 1rsg_A            6 PAKKKVIIIGAGIAGLKAASTLHQNGIQDCLVLEARDRVG   45 (516)
T ss_dssp             CEEEEEEEECCBHHHHHHHHHHHHTTCCSEEEECSSSSSB
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHhcCCCCEEEEeCCCCCC
Confidence            45689999999999999999999999 9999999998654

>3q9t_A Choline dehydrogenase and related flavoproteins; glucose-methanol-choline oxidoreductase family, formate OXID formyl-FAD, oxidoreductase; HET: FAY; 2.24A {Aspergillus oryzae}

Probab=98.21  E-value=3.6e-06  Score=85.33  Aligned_cols=36  Identities=39%  Similarity=0.426  Sum_probs=33.4

Q ss_pred             CCCcEEEECCChHHHHHHHHHHhCC-CcEEEEccCCC
Q psy9141           5 SKKSVVIVGGGLVGSLSACMFAKNQ-YEVNLYEARED   40 (379)
Q Consensus         5 ~~~dVvIVGaGpaGl~~A~~La~~G-~~V~viE~~~~   40 (379)
                      .+||+||||||.|||.+|..|++.| .+|+|||+.+.
T Consensus         5 ~~yDyIVVGgG~AG~v~A~rLse~~~~~VLllEaG~~   41 (577)
T 3q9t_A            5 SHFDFVIVGGGTAGNTVAGRLAENPNVTVLIVEAGIG   41 (577)
T ss_dssp             CEEEEEEESCSHHHHHHHHHHTTSTTSCEEEECSSCS
T ss_pred             CcccEEEECCcHHHHHHHHHHHhCCCCcEEEEecCCC
Confidence            4699999999999999999999998 79999999875

>3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A*

Probab=98.21  E-value=6e-06  Score=79.66  Aligned_cols=104  Identities=19%  Similarity=0.255  Sum_probs=66.7

Q ss_pred             CcEEEECCChHHHHHHHHHHhCC--CcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeE
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKNQ--YEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARM   84 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~G--~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~   84 (379)
                      .+|+|||||++|+++|..|++.+  .+|+|||+++.....             +          ++..+...........
T Consensus         3 KkVvIIG~G~AG~~aA~~L~~~~~~~~Vtlie~~~~~~~~-------------p----------~~~~v~~g~~~~~~~~   59 (401)
T 3vrd_B            3 RKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNETYYTC-------------Y----------MSNEVIGGDRELASLR   59 (401)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSSEECS-------------T----------THHHHHHTSSCGGGGE
T ss_pred             CEEEEECCcHHHHHHHHHHHhcCcCCeEEEEeCCCCCCCc-------------c----------CHHHHhcCCCCHHHHh
Confidence            47999999999999999998875  589999987632110             1          1111111111111110


Q ss_pred             EEecCCcEEEeeCCCCCcHHHHhcCCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEEEecCCCCh
Q psy9141          85 IHGQNGKLREIPYDPVHNQVELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAYS  157 (379)
Q Consensus        85 ~~~~~g~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlVV~AdG~~S  157 (379)
                                .++      ..+.. .+++++.+ +|++|+.+...+  .+. +|.+   +.+|.+|.|+|...
T Consensus        60 ----------~~~------~~~~~-~gv~~i~~-~v~~id~~~~~v--~~~-~g~~---i~yd~LviAtG~~~  108 (401)
T 3vrd_B           60 ----------VGY------DGLRA-HGIQVVHD-SALGIDPDKKLV--KTA-GGAE---FAYDRCVVAPGIDL  108 (401)
T ss_dssp             ----------ECS------HHHHH-TTCEEECS-CEEEEETTTTEE--EET-TSCE---EECSEEEECCCEEE
T ss_pred             ----------hCH------HHHHH-CCCEEEEe-EEEEEEccCcEE--Eec-ccce---eecceeeeccCCcc
Confidence                      011      12222 58888765 688888766654  455 8887   99999999999754

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}

Probab=98.20  E-value=4.8e-06  Score=82.60  Aligned_cols=99  Identities=21%  Similarity=0.205  Sum_probs=74.1

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeEEE
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARMIH   86 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~   86 (379)
                      .+|+|||||+.|+-+|..|++.|.+|+++|+.+....           .+.+...+.+.                     
T Consensus       186 ~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~-----------~~d~~~~~~l~---------------------  233 (479)
T 2hqm_A          186 KKVVVVGAGYIGIELAGVFHGLGSETHLVIRGETVLR-----------KFDECIQNTIT---------------------  233 (479)
T ss_dssp             SEEEEECSSHHHHHHHHHHHHTTCEEEEECSSSSSCT-----------TSCHHHHHHHH---------------------
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCceEEEEeCCcccc-----------ccCHHHHHHHH---------------------
Confidence            5799999999999999999999999999998864421           11222211110                     


Q ss_pred             ecCCcEEEeeCCCCCcHHHHhcCCCCeEEeCceEEEEEecCCe--EEEEEccCC-ceeEEEeecEEEecCCCChHH
Q psy9141          87 GQNGKLREIPYDPVHNQVELEQYPDCNIYFQHKLINLDVNSGN--VTFYRTEDN-SETKITDNQLIIGADGAYSGV  159 (379)
Q Consensus        87 ~~~g~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~--v~v~~~~~G-~~~~~i~adlVV~AdG~~S~v  159 (379)
                                       ..+ +..|++++++++|++++.++++  +.+.+. +| ++   +++|.||.|.|..+.+
T Consensus       234 -----------------~~l-~~~Gv~i~~~~~v~~i~~~~~~~~~~v~~~-~G~~~---i~~D~vv~a~G~~p~~  287 (479)
T 2hqm_A          234 -----------------DHY-VKEGINVHKLSKIVKVEKNVETDKLKIHMN-DSKSI---DDVDELIWTIGRKSHL  287 (479)
T ss_dssp             -----------------HHH-HHHTCEEECSCCEEEEEECC-CCCEEEEET-TSCEE---EEESEEEECSCEEECC
T ss_pred             -----------------HHH-HhCCeEEEeCCEEEEEEEcCCCcEEEEEEC-CCcEE---EEcCEEEECCCCCCcc
Confidence                             111 2248999999999999876554  778888 88 55   9999999999988765

>4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A*

Probab=98.20  E-value=2e-05  Score=78.65  Aligned_cols=51  Identities=10%  Similarity=0.008  Sum_probs=36.9

Q ss_pred             HHhcCCCCeEEeCceEEEEEecCC--------eEEEEEc--cCCceeEEEeecEEEecCCCC
Q psy9141         105 ELEQYPDCNIYFQHKLINLDVNSG--------NVTFYRT--EDNSETKITDNQLIIGADGAY  156 (379)
Q Consensus       105 ~~~~~~gv~i~~~~~v~~i~~~~~--------~v~v~~~--~~G~~~~~i~adlVV~AdG~~  156 (379)
                      ..++.-+..|+++++|++++..+.        .++|+..  .+|+..+ +.|+.||.|+|..
T Consensus       153 ~~A~~~~~~vrf~~~V~~v~~~~~~~~~~~~~~~~V~~~~~~~g~~~~-~~ar~vVlatG~~  213 (501)
T 4b63_A          153 WCAQQFSDVVAYGEEVVEVIPGKSDPSSSVVDFFTVRSRNVETGEISA-RRTRKVVIAIGGT  213 (501)
T ss_dssp             HHHHTTGGGEEESEEEEEEEEECSSTTSSCBCEEEEEEEETTTCCEEE-EEEEEEEECCCCE
T ss_pred             HHHHHcCCceEcceEEEeeccccccccccccceEEEEEecCCCceEEE-EEeCEEEECcCCC
Confidence            334445677999999999986542        4777765  1345556 8999999999964

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*

Probab=98.20  E-value=5.6e-06  Score=82.15  Aligned_cols=101  Identities=13%  Similarity=0.201  Sum_probs=76.0

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeEE
Q psy9141           6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARMI   85 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~~   85 (379)
                      ..+|+|||||+.|+-+|..|++.|.+|+|+|+.+.....           +.+...+.+                     
T Consensus       185 ~~~vvViGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l~~-----------~~~~~~~~l---------------------  232 (482)
T 1ojt_A          185 PGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGLMQG-----------ADRDLVKVW---------------------  232 (482)
T ss_dssp             CSEEEEESCSHHHHHHHHHHHHHTCEEEEECSSSSSSTT-----------SCHHHHHHH---------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEECCccccc-----------cCHHHHHHH---------------------
Confidence            358999999999999999999999999999988644210           112111111                     


Q ss_pred             EecCCcEEEeeCCCCCcHHHHhcCCCCeEEeCceEEEEEecCCeEEEEEccC----CceeEEEeecEEEecCCCChHHH
Q psy9141          86 HGQNGKLREIPYDPVHNQVELEQYPDCNIYFQHKLINLDVNSGNVTFYRTED----NSETKITDNQLIIGADGAYSGVR  160 (379)
Q Consensus        86 ~~~~g~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~----G~~~~~i~adlVV~AdG~~S~vr  160 (379)
                                        ....+..|++++++++|++++.+++++.+++. +    |++   +++|.||.|.|..+.+.
T Consensus       233 ------------------~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~-~~~~~g~~---~~~D~vv~a~G~~p~~~  289 (482)
T 1ojt_A          233 ------------------QKQNEYRFDNIMVNTKTVAVEPKEDGVYVTFE-GANAPKEP---QRYDAVLVAAGRAPNGK  289 (482)
T ss_dssp             ------------------HHHHGGGEEEEECSCEEEEEEEETTEEEEEEE-SSSCCSSC---EEESCEEECCCEEECGG
T ss_pred             ------------------HHHHHhcCCEEEECCEEEEEEEcCCeEEEEEe-ccCCCceE---EEcCEEEECcCCCcCCC
Confidence                              11122358999999999999988777778777 6    666   89999999999987653

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*

Probab=98.19  E-value=7.1e-07  Score=88.21  Aligned_cols=39  Identities=26%  Similarity=0.210  Sum_probs=34.1

Q ss_pred             CCCCCCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCC
Q psy9141           1 MKCNSKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEARE   39 (379)
Q Consensus         1 M~~m~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~   39 (379)
                      |+.|+++||+||||||+|+++|..|++.|++|+|||+.+
T Consensus         1 m~~m~~~dvvIIG~G~aG~~aA~~l~~~g~~V~lie~~~   39 (464)
T 2eq6_A            1 MTPMKTYDLIVIGTGPGGYHAAIRAAQLGLKVLAVEAGE   39 (464)
T ss_dssp             ---CEEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             CCCcccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            555667999999999999999999999999999999986

>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5

Probab=98.19  E-value=2.4e-06  Score=84.97  Aligned_cols=67  Identities=19%  Similarity=0.276  Sum_probs=49.2

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCC---CCCC------cccccccCHHHHHHHHHCCChHH
Q psy9141           6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSG---LSEG------KSINLALSVRGREALRRIGLEDK   72 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~---~~~g------~~i~~al~~~~~~~l~~lGl~~~   72 (379)
                      .+||+|||||++||++|+.|++.|++|+|+|+++......   ..+|      ...-....+...++++++|+...
T Consensus        13 ~~~v~iiG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~GG~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~lgl~~~   88 (504)
T 1sez_A           13 AKRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGKAGGKLRSVSQDGLIWDEGANTMTESEGDVTFLIDSLGLREK   88 (504)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTSCEEEEECSSSSSCSSCCEEEETTEEEESSCCCBCCCSHHHHHHHHHTTCGGG
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCCCceeeeccCCeEEecCCcccccCcHHHHHHHHHcCCccc
Confidence            4799999999999999999999999999999998764210   0011      11100124678899999997643

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...

Probab=98.17  E-value=9.3e-07  Score=87.63  Aligned_cols=36  Identities=22%  Similarity=0.235  Sum_probs=33.3

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCC
Q psy9141           4 NSKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEARE   39 (379)
Q Consensus         4 m~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~   39 (379)
                      |.++||+||||||+|+++|+.|++.|++|+|||+..
T Consensus        18 ~~~~dVvIIGgG~aGl~aA~~la~~G~~V~liE~~~   53 (478)
T 3dk9_A           18 VASYDYLVIGGGSGGLASARRAAELGARAAVVESHK   53 (478)
T ss_dssp             EEECSEEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHhCCCeEEEEecCC
Confidence            456899999999999999999999999999999764

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*

Probab=98.16  E-value=1.1e-05  Score=79.01  Aligned_cols=100  Identities=21%  Similarity=0.256  Sum_probs=71.3

Q ss_pred             CCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeE
Q psy9141           5 SKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARM   84 (379)
Q Consensus         5 ~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~   84 (379)
                      ...+|+|||||++|+.+|..|++.|.+|+|+|+.+.....          .+.+...+.+                    
T Consensus       148 ~~~~vvIiG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~----------~~~~~~~~~l--------------------  197 (447)
T 1nhp_A          148 EVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRPLGV----------YLDKEFTDVL--------------------  197 (447)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTT----------TCCHHHHHHH--------------------
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCcccccc----------cCCHHHHHHH--------------------
Confidence            4579999999999999999999999999999988643210          0111100000                    


Q ss_pred             EEecCCcEEEeeCCCCCcHHHHhcCCCCeEEeCceEEEEEecCCeE-EEEEccCCceeEEEeecEEEecCCCChHH
Q psy9141          85 IHGQNGKLREIPYDPVHNQVELEQYPDCNIYFQHKLINLDVNSGNV-TFYRTEDNSETKITDNQLIIGADGAYSGV  159 (379)
Q Consensus        85 ~~~~~g~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~v-~v~~~~~G~~~~~i~adlVV~AdG~~S~v  159 (379)
                                         ....+..|++++++++|++++.+ +.+ .+.+  +|++   +++|.||.|.|..+.+
T Consensus       198 -------------------~~~l~~~gv~i~~~~~v~~i~~~-~~v~~v~~--~~~~---i~~d~vi~a~G~~p~~  248 (447)
T 1nhp_A          198 -------------------TEEMEANNITIATGETVERYEGD-GRVQKVVT--DKNA---YDADLVVVAVGVRPNT  248 (447)
T ss_dssp             -------------------HHHHHTTTEEEEESCCEEEEECS-SBCCEEEE--SSCE---EECSEEEECSCEEESC
T ss_pred             -------------------HHHHHhCCCEEEcCCEEEEEEcc-CcEEEEEE--CCCE---EECCEEEECcCCCCCh
Confidence                               12223468999999999999876 433 3444  4555   9999999999988754

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*

Probab=98.16  E-value=5.5e-06  Score=80.41  Aligned_cols=101  Identities=19%  Similarity=0.167  Sum_probs=74.9

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeEE
Q psy9141           6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARMI   85 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~~   85 (379)
                      ..+|+|||+|+.|+-+|..|++.|.+|+++|+.+...      .+    .+.+...+.+                     
T Consensus       143 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtvv~~~~~~l------~~----~~~~~~~~~l---------------------  191 (410)
T 3ef6_A          143 ATRLLIVGGGLIGCEVATTARKLGLSVTILEAGDELL------VR----VLGRRIGAWL---------------------  191 (410)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSS------HH----HHCHHHHHHH---------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCeEEEEecCCccc------hh----hcCHHHHHHH---------------------
Confidence            3589999999999999999999999999999886432      11    1112111111                     


Q ss_pred             EecCCcEEEeeCCCCCcHHHHhcCCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEEEecCCCChHH
Q psy9141          86 HGQNGKLREIPYDPVHNQVELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAYSGV  159 (379)
Q Consensus        86 ~~~~g~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlVV~AdG~~S~v  159 (379)
                                        ....+..|++++++++|++++.++....+++. +|++   ++||+||.|.|..+.+
T Consensus       192 ------------------~~~l~~~GV~i~~~~~v~~i~~~~~~~~v~~~-dg~~---i~aD~Vv~a~G~~p~~  243 (410)
T 3ef6_A          192 ------------------RGLLTELGVQVELGTGVVGFSGEGQLEQVMAS-DGRS---FVADSALICVGAEPAD  243 (410)
T ss_dssp             ------------------HHHHHHHTCEEECSCCEEEEECSSSCCEEEET-TSCE---EECSEEEECSCEEECC
T ss_pred             ------------------HHHHHHCCCEEEeCCEEEEEeccCcEEEEEEC-CCCE---EEcCEEEEeeCCeecH
Confidence                              11112258999999999999876655567888 8987   9999999999998754

>3qvp_A Glucose oxidase; oxidoreductase; HET: NAG BMA MAN FAD; 1.20A {Aspergillus niger} PDB: 1gal_A* 1cf3_A* 3qvr_A*

Probab=98.16  E-value=1e-05  Score=82.05  Aligned_cols=35  Identities=29%  Similarity=0.455  Sum_probs=32.4

Q ss_pred             CCCcEEEECCChHHHHHHHHHHhC-CCcEEEEccCC
Q psy9141           5 SKKSVVIVGGGLVGSLSACMFAKN-QYEVNLYEARE   39 (379)
Q Consensus         5 ~~~dVvIVGaGpaGl~~A~~La~~-G~~V~viE~~~   39 (379)
                      ..||+||||||.|||.+|..|++. +.+|+|||+.+
T Consensus        18 ~~yDyIIVGgG~AG~vlA~RLse~~~~~VLlLEaG~   53 (583)
T 3qvp_A           18 RTVDYIIAGGGLTGLTTAARLTENPNISVLVIESGS   53 (583)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHTTSTTCCEEEECSSC
T ss_pred             CCccEEEECCcHHHHHHHHHHHhCCCCcEEEEecCC
Confidence            468999999999999999999975 89999999987

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*

Probab=98.15  E-value=1.2e-05  Score=78.59  Aligned_cols=101  Identities=15%  Similarity=0.237  Sum_probs=73.5

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeEE
Q psy9141           6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARMI   85 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~~   85 (379)
                      ..+|+|||||+.|+-+|..|++.|.+|+++|+.+.+..      +    .+.+...+.+.                    
T Consensus       149 ~~~vvViGgG~~g~E~A~~l~~~G~~Vtlv~~~~~~l~------~----~~~~~~~~~l~--------------------  198 (431)
T 1q1r_A          149 DNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAARVLE------R----VTAPPVSAFYE--------------------  198 (431)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTT------T----TSCHHHHHHHH--------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCEEEEEEeCCcccc------c----hhhHHHHHHHH--------------------
Confidence            35899999999999999999999999999998764421      1    11122111111                    


Q ss_pred             EecCCcEEEeeCCCCCcHHHHhcCCCCeEEeCceEEEEEe--cCCeE-EEEEccCCceeEEEeecEEEecCCCChHH
Q psy9141          86 HGQNGKLREIPYDPVHNQVELEQYPDCNIYFQHKLINLDV--NSGNV-TFYRTEDNSETKITDNQLIIGADGAYSGV  159 (379)
Q Consensus        86 ~~~~g~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~--~~~~v-~v~~~~~G~~~~~i~adlVV~AdG~~S~v  159 (379)
                                        ..+ +..|++++++++|++++.  +++.+ .+.+. +|++   +.+|.||.|.|..+.+
T Consensus       199 ------------------~~l-~~~GV~i~~~~~v~~i~~~~~~~~v~~v~~~-~G~~---i~~D~Vv~a~G~~p~~  252 (431)
T 1q1r_A          199 ------------------HLH-REAGVDIRTGTQVCGFEMSTDQQKVTAVLCE-DGTR---LPADLVIAGIGLIPNC  252 (431)
T ss_dssp             ------------------HHH-HHHTCEEECSCCEEEEEECTTTCCEEEEEET-TSCE---EECSEEEECCCEEECC
T ss_pred             ------------------HHH-HhCCeEEEeCCEEEEEEeccCCCcEEEEEeC-CCCE---EEcCEEEECCCCCcCc
Confidence                              111 124889999999999987  44555 57787 8877   9999999999987643

>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A*

Probab=98.15  E-value=1.8e-06  Score=85.74  Aligned_cols=42  Identities=24%  Similarity=0.278  Sum_probs=35.2

Q ss_pred             CCCCCCCcEEEECCChHHHHHHHHHHhCC-CcEEEEccCCCCC
Q psy9141           1 MKCNSKKSVVIVGGGLVGSLSACMFAKNQ-YEVNLYEAREDIR   42 (379)
Q Consensus         1 M~~m~~~dVvIVGaGpaGl~~A~~La~~G-~~V~viE~~~~~~   42 (379)
                      |++++.+||+|||||++||++|+.|++.| .+|+|+|+++...
T Consensus         4 m~~~~~~~v~iiG~G~~Gl~~A~~l~~~g~~~v~v~E~~~~~G   46 (484)
T 4dsg_A            4 MAELLTPKIVIIGAGPTGLGAAVRLTELGYKNWHLYECNDTPG   46 (484)
T ss_dssp             ---CCSCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESSSSSS
T ss_pred             CCcccCCCEEEECcCHHHHHHHHHHHHcCCCCEEEEeCCCCCC
Confidence            33345689999999999999999999998 7999999997653

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*

Probab=98.13  E-value=1.6e-05  Score=78.27  Aligned_cols=102  Identities=17%  Similarity=0.193  Sum_probs=73.8

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeEEE
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARMIH   86 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~   86 (379)
                      .+|+|||||+.|+-+|..|++.|.+|+|+|+.+.....           +.+...+.+.                     
T Consensus       172 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~-----------~~~~~~~~l~---------------------  219 (464)
T 2a8x_A          172 KSIIIAGAGAIGMEFGYVLKNYGVDVTIVEFLPRALPN-----------EDADVSKEIE---------------------  219 (464)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTT-----------SCHHHHHHHH---------------------
T ss_pred             CeEEEECCcHHHHHHHHHHHHcCCeEEEEEcCCccccc-----------cCHHHHHHHH---------------------
Confidence            58999999999999999999999999999988643210           1122111111                     


Q ss_pred             ecCCcEEEeeCCCCCcHHHHhcCCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEEEecCCCChHH
Q psy9141          87 GQNGKLREIPYDPVHNQVELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAYSGV  159 (379)
Q Consensus        87 ~~~g~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlVV~AdG~~S~v  159 (379)
                                       ..+ +..|++++++++|++++.+++++.+.+..+|+..+ +.+|.||.|.|....+
T Consensus       220 -----------------~~l-~~~gv~i~~~~~v~~i~~~~~~~~v~~~~~g~~~~-~~~D~vv~a~G~~p~~  273 (464)
T 2a8x_A          220 -----------------KQF-KKLGVTILTATKVESIADGGSQVTVTVTKDGVAQE-LKAEKVLQAIGFAPNV  273 (464)
T ss_dssp             -----------------HHH-HHHTCEEECSCEEEEEEECSSCEEEEEESSSCEEE-EEESEEEECSCEEECC
T ss_pred             -----------------HHH-HHcCCEEEeCcEEEEEEEcCCeEEEEEEcCCceEE-EEcCEEEECCCCCccC
Confidence                             111 12489999999999998877667776642564334 9999999999988754

>3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A* 2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A* 1kif_A* 1an9_A* 1evi_A*

Probab=98.11  E-value=1.2e-06  Score=82.94  Aligned_cols=34  Identities=24%  Similarity=0.485  Sum_probs=31.9

Q ss_pred             cEEEECCChHHHHHHHHHHhCC------CcEEEEccCCCC
Q psy9141           8 SVVIVGGGLVGSLSACMFAKNQ------YEVNLYEAREDI   41 (379)
Q Consensus         8 dVvIVGaGpaGl~~A~~La~~G------~~V~viE~~~~~   41 (379)
                      ||+|||||++|+++|+.|+++|      .+|+|+|+....
T Consensus         2 dVvIIGgGi~Gls~A~~La~~G~~~~p~~~V~vlE~~~~~   41 (351)
T 3g3e_A            2 RVVVIGAGVIGLSTALCIHERYHSVLQPLDIKVYADRFTP   41 (351)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHTTTSSSCEEEEEESSCGG
T ss_pred             cEEEECCCHHHHHHHHHHHHhccccCCCceEEEEECCCCC
Confidence            8999999999999999999998      999999998744

>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A*

Probab=98.11  E-value=2.6e-06  Score=84.51  Aligned_cols=38  Identities=39%  Similarity=0.549  Sum_probs=35.0

Q ss_pred             CCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCC
Q psy9141           5 SKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIR   42 (379)
Q Consensus         5 ~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~   42 (379)
                      +.+||+|||||++||++|+.|++.|++|+|+|+.+.+.
T Consensus        10 ~~~~v~IIGaG~aGl~aA~~L~~~g~~v~v~E~~~~~G   47 (489)
T 2jae_A           10 GSHSVVVLGGGPAGLCSAFELQKAGYKVTVLEARTRPG   47 (489)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSC
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEeccCCCC
Confidence            46899999999999999999999999999999997654

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*

Probab=98.11  E-value=1.6e-05  Score=79.65  Aligned_cols=100  Identities=12%  Similarity=0.193  Sum_probs=74.9

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeEEE
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARMIH   86 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~   86 (379)
                      .+++|||||+.|+-+|..|++.|.+|+++|+.+.....           +.+...+.+                      
T Consensus       215 ~~vvViGgG~~g~E~A~~l~~~G~~Vtlv~~~~~~l~~-----------~~~~~~~~l----------------------  261 (523)
T 1mo9_A          215 STVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPLKLI-----------KDNETRAYV----------------------  261 (523)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTTTC-----------CSHHHHHHH----------------------
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEEecCccccc-----------ccHHHHHHH----------------------
Confidence            58999999999999999999999999999988643210           111111111                      


Q ss_pred             ecCCcEEEeeCCCCCcHHHHhcCCCCeEEeCceEEEEEecCCe----EEEEEccCCc-eeEEEeecEEEecCCCChHHH
Q psy9141          87 GQNGKLREIPYDPVHNQVELEQYPDCNIYFQHKLINLDVNSGN----VTFYRTEDNS-ETKITDNQLIIGADGAYSGVR  160 (379)
Q Consensus        87 ~~~g~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~----v~v~~~~~G~-~~~~i~adlVV~AdG~~S~vr  160 (379)
                                       ....+..|++++++++|++++.++++    +.+++. +|+ +   ++||.||.|.|..+.+.
T Consensus       262 -----------------~~~l~~~GV~i~~~~~V~~i~~~~~~~v~~~~v~~~-~G~~~---i~aD~Vv~A~G~~p~~~  319 (523)
T 1mo9_A          262 -----------------LDRMKEQGMEIISGSNVTRIEEDANGRVQAVVAMTP-NGEMR---IETDFVFLGLGEQPRSA  319 (523)
T ss_dssp             -----------------HHHHHHTTCEEESSCEEEEEEECTTSBEEEEEEEET-TEEEE---EECSCEEECCCCEECCH
T ss_pred             -----------------HHHHHhCCcEEEECCEEEEEEEcCCCceEEEEEEEC-CCcEE---EEcCEEEECcCCccCCc
Confidence                             11122358999999999999876555    678887 886 4   99999999999988654

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}

Probab=98.10  E-value=1.5e-06  Score=86.15  Aligned_cols=36  Identities=28%  Similarity=0.292  Sum_probs=33.0

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCC
Q psy9141           4 NSKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEARE   39 (379)
Q Consensus         4 m~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~   39 (379)
                      |.++||+||||||+|+++|..|++.|++|+|||++.
T Consensus         9 ~~~~dVvVIGgG~aGl~aA~~l~~~g~~V~liE~~~   44 (479)
T 2hqm_A            9 TKHYDYLVIGGGSGGVASARRAASYGAKTLLVEAKA   44 (479)
T ss_dssp             -CEEEEEEECCSHHHHHHHHHHHHTSCCEEEEESSC
T ss_pred             cccCCEEEEcCCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            346899999999999999999999999999999974

>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*

Probab=98.10  E-value=5e-06  Score=83.02  Aligned_cols=34  Identities=24%  Similarity=0.356  Sum_probs=31.7

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCcEEEEccCC
Q psy9141           6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEARE   39 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~   39 (379)
                      +.+|||||||++|+.+|..|++.+++|+|||+++
T Consensus        42 KprVVIIGgG~AGl~~A~~L~~~~~~VtLId~~~   75 (502)
T 4g6h_A           42 KPNVLILGSGWGAISFLKHIDTKKYNVSIISPRS   75 (502)
T ss_dssp             SCEEEEECSSHHHHHHHHHSCTTTCEEEEEESSS
T ss_pred             CCCEEEECCcHHHHHHHHHhhhCCCcEEEECCCC
Confidence            4579999999999999999999999999999875

>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A*

Probab=98.10  E-value=2.5e-06  Score=82.24  Aligned_cols=66  Identities=17%  Similarity=0.231  Sum_probs=46.9

Q ss_pred             CCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCC---CC--CCc-------ccccccCHHHHHHHHHCCCh
Q psy9141           5 SKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSG---LS--EGK-------SINLALSVRGREALRRIGLE   70 (379)
Q Consensus         5 ~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~---~~--~g~-------~i~~al~~~~~~~l~~lGl~   70 (379)
                      +++||+|||||++|+++|..|++.|++|+|+|+++......   ..  +|.       .+-....+...++++++|.+
T Consensus         2 ~~~~v~iiG~G~~Gl~~A~~l~~~g~~v~v~E~~~~~GG~~~~~~~~~~g~~~~~~G~~~~~~~~~~~~~~~~~l~~~   79 (384)
T 2bi7_A            2 KSKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIGGNSYDARDSETNVMVHVYGPHIFHTDNETVWNYVNKHAEM   79 (384)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSSGGGCEEECTTTCCEEETTSCCCEEESCHHHHHHHHTTSCE
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEEecCCcCCccccccccCCCceEeeCCceEECCCCHHHHHHHHHHhhh
Confidence            35799999999999999999999999999999987654210   00  111       11012346677888888764

>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}

Probab=98.10  E-value=2.6e-06  Score=81.75  Aligned_cols=37  Identities=24%  Similarity=0.545  Sum_probs=34.1

Q ss_pred             CCCcEEEECCChHHHHHHHHHHhCCCcEEEEccC-CCC
Q psy9141           5 SKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAR-EDI   41 (379)
Q Consensus         5 ~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~-~~~   41 (379)
                      ..+||+|||||++||++|+.|++.|++|+|+|++ +..
T Consensus        43 ~~~~V~IIGAGiaGL~aA~~L~~~G~~V~VlE~~~~~v   80 (376)
T 2e1m_A           43 PPKRILIVGAGIAGLVAGDLLTRAGHDVTILEANANRV   80 (376)
T ss_dssp             SCCEEEEECCBHHHHHHHHHHHHTSCEEEEECSCSSCC
T ss_pred             CCceEEEECCCHHHHHHHHHHHHCCCcEEEEecccccc
Confidence            4689999999999999999999999999999998 544

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=98.09  E-value=2.3e-05  Score=79.09  Aligned_cols=99  Identities=13%  Similarity=0.183  Sum_probs=72.3

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeEEE
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARMIH   86 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~   86 (379)
                      .+|+|||||+.|+-+|..|++.|.+|+++|+.+.....           +.+...+.+                      
T Consensus       152 ~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~-----------~~~~~~~~l----------------------  198 (565)
T 3ntd_A          152 EHATVVGGGFIGLEMMESLHHLGIKTTLLELADQVMTP-----------VDREMAGFA----------------------  198 (565)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSCTT-----------SCHHHHHHH----------------------
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCcEEEEEcCCccchh-----------cCHHHHHHH----------------------
Confidence            48999999999999999999999999999998643211           112111111                      


Q ss_pred             ecCCcEEEeeCCCCCcHHHHhcCCCCeEEeCceEEEEEe-------------------cCCeEEEEEccCCceeEEEeec
Q psy9141          87 GQNGKLREIPYDPVHNQVELEQYPDCNIYFQHKLINLDV-------------------NSGNVTFYRTEDNSETKITDNQ  147 (379)
Q Consensus        87 ~~~g~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~-------------------~~~~v~v~~~~~G~~~~~i~ad  147 (379)
                                       ....+..|++++++++|++++.                   .++++++.+. +|++   +++|
T Consensus       199 -----------------~~~l~~~GV~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~g~~---i~~D  257 (565)
T 3ntd_A          199 -----------------HQAIRDQGVDLRLGTALSEVSYQVQTHVASDAAGEDTAHQHIKGHLSLTLS-NGEL---LETD  257 (565)
T ss_dssp             -----------------HHHHHHTTCEEEETCCEEEEEEECCCCCCCGGGTCCCTTCCTTCEEEEEET-TSCE---EEES
T ss_pred             -----------------HHHHHHCCCEEEeCCeEEEEeccccccccccccccccccccCCCcEEEEEc-CCCE---EEcC
Confidence                             1111224777888888888776                   3567788887 8887   9999


Q ss_pred             EEEecCCCChHH
Q psy9141         148 LIIGADGAYSGV  159 (379)
Q Consensus       148 lVV~AdG~~S~v  159 (379)
                      .||.|.|..+.+
T Consensus       258 ~vi~a~G~~p~~  269 (565)
T 3ntd_A          258 LLIMAIGVRPET  269 (565)
T ss_dssp             EEEECSCEEECC
T ss_pred             EEEECcCCccch
Confidence            999999998654

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*

Probab=98.08  E-value=2e-05  Score=77.98  Aligned_cols=104  Identities=17%  Similarity=0.268  Sum_probs=73.7

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeEE
Q psy9141           6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARMI   85 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~~   85 (379)
                      ..+|+|||||+.|+-+|..|++.|.+|+++|+.+.....           +.+...+.+.                    
T Consensus       183 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~-----------~~~~~~~~l~--------------------  231 (478)
T 1v59_A          183 PKRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQIGAS-----------MDGEVAKATQ--------------------  231 (478)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSSS-----------SCHHHHHHHH--------------------
T ss_pred             CceEEEECCCHHHHHHHHHHHHcCCEEEEEEeCCccccc-----------cCHHHHHHHH--------------------
Confidence            358999999999999999999999999999998744211           1111111111                    


Q ss_pred             EecCCcEEEeeCCCCCcHHHHhcCCCCeEEeCceEEEEEe--cCCeEEEEEcc--CCceeEEEeecEEEecCCCChHHH
Q psy9141          86 HGQNGKLREIPYDPVHNQVELEQYPDCNIYFQHKLINLDV--NSGNVTFYRTE--DNSETKITDNQLIIGADGAYSGVR  160 (379)
Q Consensus        86 ~~~~g~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~--~~~~v~v~~~~--~G~~~~~i~adlVV~AdG~~S~vr  160 (379)
                                        ..+ +..|++++++++|++++.  +++.+.+.+.+  +|+..+ +++|.||.|.|..+.+.
T Consensus       232 ------------------~~l-~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~~~~g~~~~-~~~D~vv~a~G~~p~~~  290 (478)
T 1v59_A          232 ------------------KFL-KKQGLDFKLSTKVISAKRNDDKNVVEIVVEDTKTNKQEN-LEAEVLLVAVGRRPYIA  290 (478)
T ss_dssp             ------------------HHH-HHTTCEEECSEEEEEEEEETTTTEEEEEEEETTTTEEEE-EEESEEEECSCEEECCT
T ss_pred             ------------------HHH-HHCCCEEEeCCEEEEEEEecCCCeEEEEEEEcCCCCceE-EECCEEEECCCCCcCCC
Confidence                              112 225899999999999987  56666666541  233234 99999999999987654

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}

Probab=98.08  E-value=3.2e-05  Score=75.94  Aligned_cols=99  Identities=12%  Similarity=0.184  Sum_probs=74.2

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeEEE
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARMIH   86 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~   86 (379)
                      .+++|||+|+.|+-+|..|++.|.+|+++|+.+.....          .+.+...+.+                      
T Consensus       148 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~----------~~d~~~~~~l----------------------  195 (452)
T 3oc4_A          148 QTVAVIGAGPIGMEAIDFLVKMKKTVHVFESLENLLPK----------YFDKEMVAEV----------------------  195 (452)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTT----------TCCHHHHHHH----------------------
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEEccCccccc----------cCCHHHHHHH----------------------
Confidence            47999999999999999999999999999988644211          0112211111                      


Q ss_pred             ecCCcEEEeeCCCCCcHHHHhcCCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEEEecCCCChHH
Q psy9141          87 GQNGKLREIPYDPVHNQVELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAYSGV  159 (379)
Q Consensus        87 ~~~g~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlVV~AdG~~S~v  159 (379)
                                       ....+..|++++++++|++++.+++++.+.+. +| +   +++|.||.|.|....+
T Consensus       196 -----------------~~~l~~~GV~i~~~~~v~~i~~~~~~v~v~~~-~g-~---i~aD~Vv~A~G~~p~~  246 (452)
T 3oc4_A          196 -----------------QKSLEKQAVIFHFEETVLGIEETANGIVLETS-EQ-E---ISCDSGIFALNLHPQL  246 (452)
T ss_dssp             -----------------HHHHHTTTEEEEETCCEEEEEECSSCEEEEES-SC-E---EEESEEEECSCCBCCC
T ss_pred             -----------------HHHHHHcCCEEEeCCEEEEEEccCCeEEEEEC-CC-E---EEeCEEEECcCCCCCh
Confidence                             11222358999999999999977777777776 66 5   9999999999997644

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*

Probab=98.08  E-value=2e-05  Score=77.96  Aligned_cols=101  Identities=10%  Similarity=0.144  Sum_probs=72.7

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeEEE
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARMIH   86 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~   86 (379)
                      .+|+|||||+.|+-+|..|++.|.+|+++|+.+....      +    .+.+...+.+                      
T Consensus       179 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~------~----~~~~~~~~~l----------------------  226 (474)
T 1zmd_A          179 EKMVVIGAGVIGVELGSVWQRLGADVTAVEFLGHVGG------V----GIDMEISKNF----------------------  226 (474)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSC------S----SCCHHHHHHH----------------------
T ss_pred             ceEEEECCCHHHHHHHHHHHHcCCEEEEEeccCccCC------c----ccCHHHHHHH----------------------
Confidence            5799999999999999999999999999998864421      0    0111111111                      


Q ss_pred             ecCCcEEEeeCCCCCcHHHHhcCCCCeEEeCceEEEEEecCCe-EEEEEc----cCCceeEEEeecEEEecCCCChHH
Q psy9141          87 GQNGKLREIPYDPVHNQVELEQYPDCNIYFQHKLINLDVNSGN-VTFYRT----EDNSETKITDNQLIIGADGAYSGV  159 (379)
Q Consensus        87 ~~~g~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~-v~v~~~----~~G~~~~~i~adlVV~AdG~~S~v  159 (379)
                                       ....+..|++++++++|++++.++++ +.+++.    .++++   +++|.||.|.|..+.+
T Consensus       227 -----------------~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~v~~~~~~~~~~~~---i~~D~vv~a~G~~p~~  284 (474)
T 1zmd_A          227 -----------------QRILQKQGFKFKLNTKVTGATKKSDGKIDVSIEAASGGKAEV---ITCDVLLVCIGRRPFT  284 (474)
T ss_dssp             -----------------HHHHHHTTCEEECSEEEEEEEECTTSCEEEEEEETTSCCCEE---EEESEEEECSCEEECC
T ss_pred             -----------------HHHHHHCCCEEEeCceEEEEEEcCCceEEEEEEecCCCCceE---EEcCEEEECcCCCcCC
Confidence                             11122358999999999999887765 666641    14555   9999999999988754

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.08  E-value=2.6e-05  Score=77.70  Aligned_cols=101  Identities=14%  Similarity=0.158  Sum_probs=74.9

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeEEE
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARMIH   86 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~   86 (379)
                      .+|+|||||+.|+-+|..|++.|.+|+++|+.+..-.           .+.+...+.+.                     
T Consensus       177 ~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~-----------~~d~~~~~~l~---------------------  224 (500)
T 1onf_A          177 KKIGIVGSGYIAVELINVIKRLGIDSYIFARGNRILR-----------KFDESVINVLE---------------------  224 (500)
T ss_dssp             SEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSSSCT-----------TSCHHHHHHHH---------------------
T ss_pred             CeEEEECChHHHHHHHHHHHHcCCeEEEEecCCccCc-----------ccchhhHHHHH---------------------
Confidence            4799999999999999999999999999998764421           01122111110                     


Q ss_pred             ecCCcEEEeeCCCCCcHHHHhcCCCCeEEeCceEEEEEecCC-eEEEEEccCCceeEEEeecEEEecCCCChHHH
Q psy9141          87 GQNGKLREIPYDPVHNQVELEQYPDCNIYFQHKLINLDVNSG-NVTFYRTEDNSETKITDNQLIIGADGAYSGVR  160 (379)
Q Consensus        87 ~~~g~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~-~v~v~~~~~G~~~~~i~adlVV~AdG~~S~vr  160 (379)
                                       ..+. ..|++++++++|++++.+++ .+.+.+. +|++ + +++|.||.|.|....+.
T Consensus       225 -----------------~~l~-~~gv~i~~~~~v~~i~~~~~~~~~v~~~-~g~~-~-~~~D~vi~a~G~~p~~~  278 (500)
T 1onf_A          225 -----------------NDMK-KNNINIVTFADVVEIKKVSDKNLSIHLS-DGRI-Y-EHFDHVIYCVGRSPDTE  278 (500)
T ss_dssp             -----------------HHHH-HTTCEEECSCCEEEEEESSTTCEEEEET-TSCE-E-EEESEEEECCCBCCTTT
T ss_pred             -----------------HHHH-hCCCEEEECCEEEEEEEcCCceEEEEEC-CCcE-E-EECCEEEECCCCCcCCC
Confidence                             1122 25899999999999987654 4778888 8875 4 88999999999887653

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}

Probab=98.07  E-value=2.9e-05  Score=76.21  Aligned_cols=100  Identities=18%  Similarity=0.272  Sum_probs=73.2

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeEEE
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARMIH   86 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~   86 (379)
                      .+|+|||||+.|+-+|..|++.|.+|+++|+.+.....          .+.+...+.+                      
T Consensus       150 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~----------~~~~~~~~~l----------------------  197 (452)
T 2cdu_A          150 KTITIIGSGYIGAELAEAYSNQNYNVNLIDGHERVLYK----------YFDKEFTDIL----------------------  197 (452)
T ss_dssp             SEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSTTTT----------TSCHHHHHHH----------------------
T ss_pred             CeEEEECcCHHHHHHHHHHHhcCCEEEEEEcCCchhhh----------hhhhhHHHHH----------------------
Confidence            57999999999999999999999999999988644210          0122211111                      


Q ss_pred             ecCCcEEEeeCCCCCcHHHHhcCCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEEEecCCCChHH
Q psy9141          87 GQNGKLREIPYDPVHNQVELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAYSGV  159 (379)
Q Consensus        87 ~~~g~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlVV~AdG~~S~v  159 (379)
                                       ....+..|++++++++|++++.+++++..... +|++   +++|.||.|.|....+
T Consensus       198 -----------------~~~l~~~Gv~i~~~~~v~~i~~~~~~v~~v~~-~g~~---i~~D~vv~a~G~~p~~  249 (452)
T 2cdu_A          198 -----------------AKDYEAHGVNLVLGSKVAAFEEVDDEIITKTL-DGKE---IKSDIAILCIGFRPNT  249 (452)
T ss_dssp             -----------------HHHHHHTTCEEEESSCEEEEEEETTEEEEEET-TSCE---EEESEEEECCCEEECC
T ss_pred             -----------------HHHHHHCCCEEEcCCeeEEEEcCCCeEEEEEe-CCCE---EECCEEEECcCCCCCH
Confidence                             11112358999999999999876666654445 7766   9999999999988754

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*

Probab=98.07  E-value=3e-05  Score=77.16  Aligned_cols=100  Identities=24%  Similarity=0.293  Sum_probs=74.0

Q ss_pred             CcEEEECCChHHHHHHHHHHh----CCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCcee
Q psy9141           7 KSVVIVGGGLVGSLSACMFAK----NQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRA   82 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~----~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~   82 (379)
                      .+|+|||||+.|+-+|..|++    .|.+|+++++.+...      ++    .+.+...+.+                  
T Consensus       181 ~~vvViGgG~iG~E~A~~l~~~~~~~g~~V~~v~~~~~~~------~~----~l~~~~~~~~------------------  232 (493)
T 1m6i_A          181 KSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNM------GK----ILPEYLSNWT------------------  232 (493)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSSTT------TT----TSCHHHHHHH------------------
T ss_pred             CeEEEECCCHHHHHHHHHHHhhhhhcCCEEEEEecCcccc------cc----cCCHHHHHHH------------------
Confidence            479999999999999999987    478999999775321      11    1222111111                  


Q ss_pred             eEEEecCCcEEEeeCCCCCcHHHHhcCCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEEEecCCCChHH
Q psy9141          83 RMIHGQNGKLREIPYDPVHNQVELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAYSGV  159 (379)
Q Consensus        83 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlVV~AdG~~S~v  159 (379)
                                           ....+..|++++++++|++++.+++.+.+++. +|++   +.||+||.|.|..+.+
T Consensus       233 ---------------------~~~l~~~GV~v~~~~~V~~i~~~~~~~~v~l~-dG~~---i~aD~Vv~a~G~~pn~  284 (493)
T 1m6i_A          233 ---------------------MEKVRREGVKVMPNAIVQSVGVSSGKLLIKLK-DGRK---VETDHIVAAVGLEPNV  284 (493)
T ss_dssp             ---------------------HHHHHTTTCEEECSCCEEEEEEETTEEEEEET-TSCE---EEESEEEECCCEEECC
T ss_pred             ---------------------HHHHHhcCCEEEeCCEEEEEEecCCeEEEEEC-CCCE---EECCEEEECCCCCccH
Confidence                                 11222358999999999999887777888888 8987   9999999999988653

>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A*

Probab=98.05  E-value=3.3e-06  Score=81.58  Aligned_cols=67  Identities=25%  Similarity=0.205  Sum_probs=46.8

Q ss_pred             CCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCC----CCCc-------ccccccCHHHHHHHHHCCChH
Q psy9141           5 SKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGL----SEGK-------SINLALSVRGREALRRIGLED   71 (379)
Q Consensus         5 ~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~----~~g~-------~i~~al~~~~~~~l~~lGl~~   71 (379)
                      .++||+|||||++|+++|+.|++.|++|+|+|+++.......    ..|.       .+-..-.+...++++++|.|.
T Consensus        28 ~~~dv~IIGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GG~~~~~~~~~G~~~~~~G~~~~~~~~~~~~~~~~~~~~~~  105 (397)
T 3hdq_A           28 KGFDYLIVGAGFAGSVLAERLASSGQRVLIVDRRPHIGGNAYDCYDDAGVLIHPYGPHIFHTNSKDVFEYLSRFTEWR  105 (397)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSSGGGCCEECTTSCEECTTSCCCCEESCHHHHHHHHTSCCEE
T ss_pred             CCCCEEEECccHHHHHHHHHHHHCCCceEEEeccCCCCCccceeeccCCceEeecCCcccCCChHHHHHHHHHhhhcc
Confidence            357999999999999999999999999999999875532110    1111       110012356677888887653

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.05  E-value=9.3e-06  Score=80.02  Aligned_cols=100  Identities=17%  Similarity=0.228  Sum_probs=71.4

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeEEE
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARMIH   86 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~   86 (379)
                      .+|+|||||++|+-+|..|++.|.+|+|+|+.+.....           +.+...+.+.                     
T Consensus       172 ~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~-----------~~~~~~~~l~---------------------  219 (458)
T 1lvl_A          172 QHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERILPT-----------YDSELTAPVA---------------------  219 (458)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSSTT-----------SCHHHHHHHH---------------------
T ss_pred             CeEEEECcCHHHHHHHHHHHHCCCeEEEEEcCCccccc-----------cCHHHHHHHH---------------------
Confidence            58999999999999999999999999999988644210           1121111110                     


Q ss_pred             ecCCcEEEeeCCCCCcHHHHhcCCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEEEecCCCChHHH
Q psy9141          87 GQNGKLREIPYDPVHNQVELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAYSGVR  160 (379)
Q Consensus        87 ~~~g~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlVV~AdG~~S~vr  160 (379)
                                       ..+ +..|++++++++|++++. + .+++... +|+..+ +++|.||.|.|..+.+.
T Consensus       220 -----------------~~l-~~~gv~i~~~~~v~~i~~-~-~v~v~~~-~G~~~~-i~~D~vv~a~G~~p~~~  271 (458)
T 1lvl_A          220 -----------------ESL-KKLGIALHLGHSVEGYEN-G-CLLANDG-KGGQLR-LEADRVLVAVGRRPRTK  271 (458)
T ss_dssp             -----------------HHH-HHHTCEEETTCEEEEEET-T-EEEEECS-SSCCCE-ECCSCEEECCCEEECCS
T ss_pred             -----------------HHH-HHCCCEEEECCEEEEEEe-C-CEEEEEC-CCceEE-EECCEEEECcCCCcCCC
Confidence                             112 224899999999999986 3 3666644 573233 99999999999887543

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*

Probab=98.05  E-value=2.4e-05  Score=77.94  Aligned_cols=100  Identities=18%  Similarity=0.198  Sum_probs=75.1

Q ss_pred             CcEEEECCChHHHHHHHHHHhC---CCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceee
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKN---QYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRAR   83 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~---G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~   83 (379)
                      .+++|||||+.|+-+|..|++.   |.+|+++|+.+..-.           .+.+...+.+.                  
T Consensus       192 ~~vvViGgG~ig~E~A~~l~~~~~~g~~Vtlv~~~~~~l~-----------~~d~~~~~~l~------------------  242 (495)
T 2wpf_A          192 RRVLTVGGGFISVEFAGIFNAYKPPGGKVTLCYRNNLILR-----------GFDETIREEVT------------------  242 (495)
T ss_dssp             SEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSSCT-----------TSCHHHHHHHH------------------
T ss_pred             CeEEEECCCHHHHHHHHHHHhhCCCCCeEEEEEcCCcccc-----------ccCHHHHHHHH------------------
Confidence            4799999999999999999999   999999998764321           01121111110                  


Q ss_pred             EEEecCCcEEEeeCCCCCcHHHHhcCCCCeEEeCceEEEEEecCC-eEEEEEccCCceeEEEeecEEEecCCCChHHH
Q psy9141          84 MIHGQNGKLREIPYDPVHNQVELEQYPDCNIYFQHKLINLDVNSG-NVTFYRTEDNSETKITDNQLIIGADGAYSGVR  160 (379)
Q Consensus        84 ~~~~~~g~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~-~v~v~~~~~G~~~~~i~adlVV~AdG~~S~vr  160 (379)
                                          ..+ +..|++++++++|++++.+++ .+.+++. +|++   +++|.||.|.|..+.+.
T Consensus       243 --------------------~~l-~~~GV~i~~~~~v~~i~~~~~~~~~v~~~-~G~~---i~~D~vv~a~G~~p~~~  295 (495)
T 2wpf_A          243 --------------------KQL-TANGIEIMTNENPAKVSLNTDGSKHVTFE-SGKT---LDVDVVMMAIGRIPRTN  295 (495)
T ss_dssp             --------------------HHH-HHTTCEEEESCCEEEEEECTTSCEEEEET-TSCE---EEESEEEECSCEEECCG
T ss_pred             --------------------HHH-HhCCCEEEeCCEEEEEEEcCCceEEEEEC-CCcE---EEcCEEEECCCCccccc
Confidence                                112 225899999999999987654 4778888 8876   99999999999987654

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}

Probab=98.03  E-value=2.7e-05  Score=76.89  Aligned_cols=101  Identities=25%  Similarity=0.266  Sum_probs=76.0

Q ss_pred             CCcEEEECCChHHHHHHHHHHhC-CCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeE
Q psy9141           6 KKSVVIVGGGLVGSLSACMFAKN-QYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARM   84 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La~~-G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~   84 (379)
                      ..+|+|||+|+.|+-+|..|++. |.+|+++|+.+.....          .+.+...+.+                    
T Consensus       159 ~~~vvViGgG~~g~e~A~~l~~~~g~~Vtlv~~~~~~l~~----------~~~~~~~~~l--------------------  208 (472)
T 3iwa_A          159 VSKAVIVGGGFIGLEMAVSLADMWGIDTTVVELADQIMPG----------FTSKSLSQML--------------------  208 (472)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHHCCEEEEECSSSSSSTT----------TSCHHHHHHH--------------------
T ss_pred             CCEEEEECCCHHHHHHHHHHHHhcCCcEEEEEccCccccc----------ccCHHHHHHH--------------------
Confidence            35899999999999999999999 9999999987643210          0111111111                    


Q ss_pred             EEecCCcEEEeeCCCCCcHHHHhcCCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEEEecCCCChHH
Q psy9141          85 IHGQNGKLREIPYDPVHNQVELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAYSGV  159 (379)
Q Consensus        85 ~~~~~g~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlVV~AdG~~S~v  159 (379)
                                         ....+..|++++++++|++++.+++.+++.+. +|++   +++|.||.|.|..+..
T Consensus       209 -------------------~~~l~~~GV~i~~~~~v~~i~~~~~~v~v~~~-~g~~---i~aD~Vv~a~G~~p~~  260 (472)
T 3iwa_A          209 -------------------RHDLEKNDVVVHTGEKVVRLEGENGKVARVIT-DKRT---LDADLVILAAGVSPNT  260 (472)
T ss_dssp             -------------------HHHHHHTTCEEECSCCEEEEEESSSBEEEEEE-SSCE---EECSEEEECSCEEECC
T ss_pred             -------------------HHHHHhcCCEEEeCCEEEEEEccCCeEEEEEe-CCCE---EEcCEEEECCCCCcCH
Confidence                               11122358999999999999987788888888 8887   9999999999997643

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*

Probab=98.03  E-value=6.4e-05  Score=73.81  Aligned_cols=146  Identities=10%  Similarity=0.099  Sum_probs=86.5

Q ss_pred             CCcEEEECCChHHHHHHHHHHhC--CCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChH--HHHhCCCCce
Q psy9141           6 KKSVVIVGGGLVGSLSACMFAKN--QYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLED--KLLAHGIPMR   81 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La~~--G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~--~l~~~~~~~~   81 (379)
                      ..+|+|||||.+|+-+|..|++.  |.+|+++++.+.....  .+..-..-...+...+.+..+....  .+........
T Consensus       227 ~~~vvVvGgG~sg~e~a~~l~~~~~~~~Vt~v~r~~~~~p~--~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~  304 (463)
T 3s5w_A          227 PMKIAIIGGGQSAAEAFIDLNDSYPSVQADMILRASALKPA--DDSPFVNEVFAPKFTDLIYSREHAERERLLREYHNTN  304 (463)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHCTTEEEEEECSSSSCCBC--CCCHHHHGGGSHHHHHHHHHSCHHHHHHHHHHTGGGT
T ss_pred             CCeEEEECCCHhHHHHHHHHHhcCCCCeEEEEEeCCCCcCc--cCCccchhccChhHHHHHhcCCHHHHHHHHHHhhccC
Confidence            45899999999999999999998  8999999998765321  1111111124455555665553111  1111100000


Q ss_pred             eeEEEecCCcEEEeeCCCCCcHHHHhcCCCCeEEeCceEEEEEecCCeEEEEEc--cCCceeEEEeecEEEecCCCChH
Q psy9141          82 ARMIHGQNGKLREIPYDPVHNQVELEQYPDCNIYFQHKLINLDVNSGNVTFYRT--EDNSETKITDNQLIIGADGAYSG  158 (379)
Q Consensus        82 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~--~~G~~~~~i~adlVV~AdG~~S~  158 (379)
                       ....+  .+.....|... -+.......+++++.+++|++++.+++++.+++.  .+|+..+ +++|+||.|+|....
T Consensus       305 -~~~~~--~~~~~~~~~~l-~~~~~~~~~~v~i~~~~~v~~v~~~~~~~~v~~~~~~~g~~~~-~~~D~Vv~AtG~~p~  378 (463)
T 3s5w_A          305 -YSVVD--TDLIERIYGVF-YRQKVSGIPRHAFRCMTTVERATATAQGIELALRDAGSGELSV-ETYDAVILATGYERQ  378 (463)
T ss_dssp             -SSCBC--HHHHHHHHHHH-HHHHHHCCCCSEEETTEEEEEEEEETTEEEEEEEETTTCCEEE-EEESEEEECCCEECC
T ss_pred             -CCcCC--HHHHHHHHHHH-HHHHhcCCCCeEEEeCCEEEEEEecCCEEEEEEEEcCCCCeEE-EECCEEEEeeCCCCC
Confidence             00000  00000000000 0033344579999999999999998888777664  2566556 999999999997654

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.03  E-value=1.7e-05  Score=78.27  Aligned_cols=103  Identities=17%  Similarity=0.295  Sum_probs=73.2

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeEE
Q psy9141           6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARMI   85 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~~   85 (379)
                      ..+|+|||||+.|+-+|..|++.|.+|+++|+.+.....           +.+...+.+.                    
T Consensus       177 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~-----------~~~~~~~~l~--------------------  225 (470)
T 1dxl_A          177 PKKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEIVPT-----------MDAEIRKQFQ--------------------  225 (470)
T ss_dssp             CSEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSSSSTT-----------SCHHHHHHHH--------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCccccc-----------ccHHHHHHHH--------------------
Confidence            358999999999999999999999999999988644210           1121111110                    


Q ss_pred             EecCCcEEEeeCCCCCcHHHHhcCCCCeEEeCceEEEEEecCCeEEEEEcc--CCceeEEEeecEEEecCCCChHH
Q psy9141          86 HGQNGKLREIPYDPVHNQVELEQYPDCNIYFQHKLINLDVNSGNVTFYRTE--DNSETKITDNQLIIGADGAYSGV  159 (379)
Q Consensus        86 ~~~~g~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~--~G~~~~~i~adlVV~AdG~~S~v  159 (379)
                                        ..+. ..|++++++++|++++.+++++.+.+..  +|+..+ +.+|.||.|.|..+.+
T Consensus       226 ------------------~~l~-~~gv~i~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~-~~~D~vv~a~G~~p~~  281 (470)
T 1dxl_A          226 ------------------RSLE-KQGMKFKLKTKVVGVDTSGDGVKLTVEPSAGGEQTI-IEADVVLVSAGRTPFT  281 (470)
T ss_dssp             ------------------HHHH-HSSCCEECSEEEEEEECSSSSEEEEEEESSSCCCEE-EEESEEECCCCEEECC
T ss_pred             ------------------HHHH-HcCCEEEeCCEEEEEEEcCCeEEEEEEecCCCcceE-EECCEEEECCCCCcCC
Confidence                              1122 2589999999999998777666666531  342233 9999999999998754

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}

Probab=98.02  E-value=1.9e-06  Score=85.81  Aligned_cols=47  Identities=15%  Similarity=0.144  Sum_probs=37.4

Q ss_pred             CeEEeCceEEEEEecCCeEEEEEc-cCCceeEEEeecEEEecCCCChHH
Q psy9141         112 CNIYFQHKLINLDVNSGNVTFYRT-EDNSETKITDNQLIIGADGAYSGV  159 (379)
Q Consensus       112 v~i~~~~~v~~i~~~~~~v~v~~~-~~G~~~~~i~adlVV~AdG~~S~v  159 (379)
                      ++++++++|++++.+++++.+.+. .+|+..+ +++|.||.|.|....+
T Consensus       229 V~i~~~~~v~~i~~~~~~v~v~~~~~~G~~~~-i~~D~Vi~a~G~~p~~  276 (492)
T 3ic9_A          229 FYFDAKARVISTIEKEDAVEVIYFDKSGQKTT-ESFQYVLAATGRKANV  276 (492)
T ss_dssp             SEEETTCEEEEEEECSSSEEEEEECTTCCEEE-EEESEEEECSCCEESC
T ss_pred             cEEEECCEEEEEEEcCCEEEEEEEeCCCceEE-EECCEEEEeeCCccCC
Confidence            999999999999988877777764 1564344 8999999999987654

>3g5s_A Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase TRMFO; tRNA methyltransferase FAD folate, FAD, flavoprotein; HET: MSE FAD GSH; 1.05A {Thermus thermophilus} PDB: 3g5q_A* 3g5r_A*

Probab=98.00  E-value=7.7e-06  Score=78.20  Aligned_cols=36  Identities=33%  Similarity=0.451  Sum_probs=33.1

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCC
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIR   42 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~   42 (379)
                      +||+|||||++|+.+|+.|++.|++|+|+|+++...
T Consensus         2 ~dViVIGgG~AG~~AA~~la~~G~~V~liE~~~~~~   37 (443)
T 3g5s_A            2 ERVNVVGAGLAGSEAAWTLLRLGVPVRLFEMRPKRM   37 (443)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEECCTTTSC
T ss_pred             CCEEEECchHHHHHHHHHHHHCCCcEEEEeccCCcC
Confidence            499999999999999999999999999999987443

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*

Probab=97.99  E-value=3.2e-05  Score=76.88  Aligned_cols=100  Identities=19%  Similarity=0.187  Sum_probs=75.0

Q ss_pred             CcEEEECCChHHHHHHHHHHhC---CCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceee
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKN---QYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRAR   83 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~---G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~   83 (379)
                      .+++|||||+.|+-+|..|++.   |.+|+++|+.+....           .+.+...+.+                   
T Consensus       188 ~~vvViGgG~ig~E~A~~l~~~~~~g~~Vtlv~~~~~~l~-----------~~d~~~~~~l-------------------  237 (490)
T 1fec_A          188 KRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMILR-----------GFDSELRKQL-------------------  237 (490)
T ss_dssp             SEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSSSST-----------TSCHHHHHHH-------------------
T ss_pred             CeEEEECCCHHHHHHHHHHHhhccCcCeEEEEEcCCCccc-----------ccCHHHHHHH-------------------
Confidence            5899999999999999999999   999999998864321           0111111111                   


Q ss_pred             EEEecCCcEEEeeCCCCCcHHHHhcCCCCeEEeCceEEEEEecCC-eEEEEEccCCceeEEEeecEEEecCCCChHHH
Q psy9141          84 MIHGQNGKLREIPYDPVHNQVELEQYPDCNIYFQHKLINLDVNSG-NVTFYRTEDNSETKITDNQLIIGADGAYSGVR  160 (379)
Q Consensus        84 ~~~~~~g~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~-~v~v~~~~~G~~~~~i~adlVV~AdG~~S~vr  160 (379)
                                          ....+..|++++++++|++++.+++ .+.+++. +|++   +++|.||.|.|..+.+.
T Consensus       238 --------------------~~~l~~~GV~i~~~~~v~~i~~~~~~~~~v~~~-~G~~---i~~D~vv~a~G~~p~~~  291 (490)
T 1fec_A          238 --------------------TEQLRANGINVRTHENPAKVTKNADGTRHVVFE-SGAE---ADYDVVMLAIGRVPRSQ  291 (490)
T ss_dssp             --------------------HHHHHHTTEEEEETCCEEEEEECTTSCEEEEET-TSCE---EEESEEEECSCEEESCT
T ss_pred             --------------------HHHHHhCCCEEEeCCEEEEEEEcCCCEEEEEEC-CCcE---EEcCEEEEccCCCcCcc
Confidence                                1112235899999999999987764 4778888 8876   99999999999987653

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*

Probab=97.99  E-value=4.8e-05  Score=73.72  Aligned_cols=97  Identities=15%  Similarity=0.271  Sum_probs=70.8

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeEE
Q psy9141           6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARMI   85 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~~   85 (379)
                      ..+|+|||||+.|+-+|..|++.|.+|+++|+.+....      +    .+.+...+.+                     
T Consensus       145 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~------~----~~~~~~~~~l---------------------  193 (408)
T 2gqw_A          145 QSRLLIVGGGVIGLELAATARTAGVHVSLVETQPRLMS------R----AAPATLADFV---------------------  193 (408)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSST------T----TSCHHHHHHH---------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCEEEEEEeCCcccc------c----ccCHHHHHHH---------------------
Confidence            35899999999999999999999999999998864421      0    0112111111                     


Q ss_pred             EecCCcEEEeeCCCCCcHHHHhcCCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEEEecCCCChHH
Q psy9141          86 HGQNGKLREIPYDPVHNQVELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAYSGV  159 (379)
Q Consensus        86 ~~~~g~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlVV~AdG~~S~v  159 (379)
                                        ....+..|++++.+++|++++ + +  .+++. +|++   +++|.||.|.|....+
T Consensus       194 ------------------~~~l~~~GV~i~~~~~v~~i~-~-~--~v~~~-~g~~---i~~D~vi~a~G~~p~~  241 (408)
T 2gqw_A          194 ------------------ARYHAAQGVDLRFERSVTGSV-D-G--VVLLD-DGTR---IAADMVVVGIGVLAND  241 (408)
T ss_dssp             ------------------HHHHHHTTCEEEESCCEEEEE-T-T--EEEET-TSCE---EECSEEEECSCEEECC
T ss_pred             ------------------HHHHHHcCcEEEeCCEEEEEE-C-C--EEEEC-CCCE---EEcCEEEECcCCCccH
Confidence                              111122589999999999998 3 3  56677 8877   9999999999987643

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}

Probab=97.98  E-value=5.3e-05  Score=74.69  Aligned_cols=103  Identities=17%  Similarity=0.213  Sum_probs=72.2

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeEEE
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARMIH   86 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~   86 (379)
                      .+|+|||||+.|+-+|..|++.|.+|+++|+.+.....           +.+...+.+.                     
T Consensus       175 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~-----------~d~~~~~~l~---------------------  222 (468)
T 2qae_A          175 KTMVVIGGGVIGLELGSVWARLGAEVTVVEFAPRCAPT-----------LDEDVTNALV---------------------  222 (468)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTT-----------SCHHHHHHHH---------------------
T ss_pred             ceEEEECCCHHHHHHHHHHHHhCCEEEEEecCCccccc-----------CCHHHHHHHH---------------------
Confidence            58999999999999999999999999999988643210           1111111100                     


Q ss_pred             ecCCcEEEeeCCCCCcHHHHhcCCCCeEEeCceEEEEEecCCeEEEEEcc-CCceeEEEeecEEEecCCCChHH
Q psy9141          87 GQNGKLREIPYDPVHNQVELEQYPDCNIYFQHKLINLDVNSGNVTFYRTE-DNSETKITDNQLIIGADGAYSGV  159 (379)
Q Consensus        87 ~~~g~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~-~G~~~~~i~adlVV~AdG~~S~v  159 (379)
                                       ..+.+..|++++++++|++++.+++++.+.+.. +|+..+ +++|.||.|.|..+.+
T Consensus       223 -----------------~~l~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~-i~~D~vv~a~G~~p~~  278 (468)
T 2qae_A          223 -----------------GALAKNEKMKFMTSTKVVGGTNNGDSVSLEVEGKNGKRET-VTCEALLVSVGRRPFT  278 (468)
T ss_dssp             -----------------HHHHHHTCCEEECSCEEEEEEECSSSEEEEEECC---EEE-EEESEEEECSCEEECC
T ss_pred             -----------------HHHhhcCCcEEEeCCEEEEEEEcCCeEEEEEEcCCCceEE-EECCEEEECCCcccCC
Confidence                             112023589999999999998877667666531 453234 9999999999998754

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}

Probab=97.98  E-value=9.2e-05  Score=73.57  Aligned_cols=36  Identities=19%  Similarity=0.328  Sum_probs=33.2

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCC
Q psy9141           6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDI   41 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~   41 (379)
                      ..+|+|||||+.|+-+|..|++.|.+|+++|+.+..
T Consensus       174 ~k~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~  209 (492)
T 3ic9_A          174 PKSVAVFGPGVIGLELGQALSRLGVIVKVFGRSGSV  209 (492)
T ss_dssp             CSEEEEESSCHHHHHHHHHHHHTTCEEEEECCTTCC
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEECCcc
Confidence            357999999999999999999999999999998755

>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7

Probab=97.96  E-value=4.4e-06  Score=79.97  Aligned_cols=36  Identities=33%  Similarity=0.455  Sum_probs=33.4

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCC
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIR   42 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~   42 (379)
                      +||+|||||++|+++|+.|++.|++|+|+|+++...
T Consensus         2 ~~v~iiG~G~~Gl~~A~~l~~~g~~v~v~E~~~~~G   37 (367)
T 1i8t_A            2 YDYIIVGSGLFGAVCANELKKLNKKVLVIEKRNHIG   37 (367)
T ss_dssp             EEEEEECCSHHHHHHHHHHGGGTCCEEEECSSSSSS
T ss_pred             CCEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCC
Confidence            699999999999999999999999999999987553

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*

Probab=97.95  E-value=5.5e-06  Score=81.77  Aligned_cols=35  Identities=26%  Similarity=0.264  Sum_probs=32.8

Q ss_pred             CCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCC
Q psy9141           5 SKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEARE   39 (379)
Q Consensus         5 ~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~   39 (379)
                      +++||+||||||+|+++|..|++.|++|+|||+..
T Consensus         3 ~~~dVvIIGgG~aGl~aA~~l~~~g~~V~liE~~~   37 (463)
T 2r9z_A            3 QHFDLIAIGGGSGGLAVAEKAAAFGKRVALIESKA   37 (463)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             ccCcEEEECCCHHHHHHHHHHHhCCCcEEEEcCCC
Confidence            46899999999999999999999999999999873

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*

Probab=97.91  E-value=7.9e-06  Score=81.94  Aligned_cols=37  Identities=11%  Similarity=0.230  Sum_probs=34.1

Q ss_pred             CCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCC
Q psy9141           5 SKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDI   41 (379)
Q Consensus         5 ~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~   41 (379)
                      .++||+|||||++|+++|..|++.|++|+|||+.+..
T Consensus        42 ~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~   78 (523)
T 1mo9_A           42 REYDAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWPFL   78 (523)
T ss_dssp             SCBSEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSS
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCC
Confidence            4689999999999999999999999999999998743

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}

Probab=97.91  E-value=8.1e-06  Score=80.48  Aligned_cols=37  Identities=27%  Similarity=0.434  Sum_probs=34.1

Q ss_pred             CCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCC
Q psy9141           5 SKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDI   41 (379)
Q Consensus         5 ~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~   41 (379)
                      ..+||+||||||+|+++|..|++.|++|+|||+.+..
T Consensus       121 ~~~~V~IIGgGpAGl~aA~~L~~~G~~V~v~e~~~~~  157 (456)
T 2vdc_G          121 LGLSVGVIGAGPAGLAAAEELRAKGYEVHVYDRYDRM  157 (456)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCC
Confidence            3579999999999999999999999999999998754

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*

Probab=97.91  E-value=5.7e-06  Score=81.33  Aligned_cols=35  Identities=29%  Similarity=0.291  Sum_probs=32.7

Q ss_pred             CCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCC
Q psy9141           5 SKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEARE   39 (379)
Q Consensus         5 ~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~   39 (379)
                      .++||+||||||+|+++|..|++.|++|+|||++.
T Consensus         3 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~liE~~~   37 (450)
T 1ges_A            3 KHYDYIAIGGGSGGIASINRAAMYGQKCALIEAKE   37 (450)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHTTTCCEEEEESSC
T ss_pred             ccCCEEEECCCHHHHHHHHHHHhCCCeEEEEcCCC
Confidence            35899999999999999999999999999999973

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.90  E-value=7.9e-06  Score=81.45  Aligned_cols=34  Identities=26%  Similarity=0.383  Sum_probs=32.3

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCcEEEEccCC
Q psy9141           6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEARE   39 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~   39 (379)
                      ++||+||||||+|+++|..|++.|++|+|||+.+
T Consensus         2 ~~dVvIIGgG~aGl~aA~~l~~~g~~V~liE~~~   35 (500)
T 1onf_A            2 VYDLIVIGGGSGGMAAARRAARHNAKVALVEKSR   35 (500)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             ccCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            3799999999999999999999999999999984

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=97.90  E-value=5.4e-05  Score=71.70  Aligned_cols=106  Identities=19%  Similarity=0.230  Sum_probs=70.2

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeEEE
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARMIH   86 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~   86 (379)
                      .+|+|||+|++|+-+|..|++.|.+|+++++.+..... ..+.. +  .+.+...+.+                      
T Consensus       167 ~~vvVvG~G~~g~e~a~~l~~~g~~V~lv~~~~~~~~~-~~d~~-~--~~~~~~~~~l----------------------  220 (369)
T 3d1c_A          167 GQYVVIGGNESGFDAAYQLAKNGSDIALYTSTTGLNDP-DADPS-V--RLSPYTRQRL----------------------  220 (369)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECC-----------CT-T--SCCHHHHHHH----------------------
T ss_pred             CEEEEECCCcCHHHHHHHHHhcCCeEEEEecCCCCCCC-CCCCC-c--cCCHHHHHHH----------------------
Confidence            47999999999999999999999999999987643210 00000 0  0111111111                      


Q ss_pred             ecCCcEEEeeCCCCCcHHHHhcCCC-CeEEeCceEEEEEecCCeEEEEEccCCceeEEEe-ecEEEecCCCChHH
Q psy9141          87 GQNGKLREIPYDPVHNQVELEQYPD-CNIYFQHKLINLDVNSGNVTFYRTEDNSETKITD-NQLIIGADGAYSGV  159 (379)
Q Consensus        87 ~~~g~~~~~~~~~~~~~~~~~~~~g-v~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~-adlVV~AdG~~S~v  159 (379)
                                       ....+..+ ++++.+++|++++.+++.+.+.+. +|++   +. +|.||.|.|.....
T Consensus       221 -----------------~~~l~~~g~v~~~~~~~v~~i~~~~~~~~v~~~-~g~~---~~~~d~vi~a~G~~~~~  274 (369)
T 3d1c_A          221 -----------------GNVIKQGARIEMNVHYTVKDIDFNNGQYHISFD-SGQS---VHTPHEPILATGFDATK  274 (369)
T ss_dssp             -----------------HHHHHTTCCEEEECSCCEEEEEEETTEEEEEES-SSCC---EEESSCCEECCCBCGGG
T ss_pred             -----------------HHHHhhCCcEEEecCcEEEEEEecCCceEEEec-CCeE---eccCCceEEeeccCCcc
Confidence                             11112344 999999999999877777788888 8876   54 59999999987654

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*

Probab=97.89  E-value=0.00013  Score=67.66  Aligned_cols=98  Identities=18%  Similarity=0.163  Sum_probs=70.1

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeEEE
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARMIH   86 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~   86 (379)
                      .+|+|||+|++|+-+|..|++.|.+|+++++.+....             .+...+.         +             
T Consensus       146 ~~v~ViG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~-------------~~~~~~~---------l-------------  190 (320)
T 1trb_A          146 QKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFRA-------------EKILIKR---------L-------------  190 (320)
T ss_dssp             SEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSCCC-------------CHHHHHH---------H-------------
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCeEEEEEeCCcccc-------------CHHHHHH---------H-------------
Confidence            5799999999999999999999999999998753310             0100000         0             


Q ss_pred             ecCCcEEEeeCCCCCcHHHHhcCCCCeEEeCceEEEEEecCCeEE-EEEccC----CceeEEEeecEEEecCCCChH
Q psy9141          87 GQNGKLREIPYDPVHNQVELEQYPDCNIYFQHKLINLDVNSGNVT-FYRTED----NSETKITDNQLIIGADGAYSG  158 (379)
Q Consensus        87 ~~~g~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~v~-v~~~~~----G~~~~~i~adlVV~AdG~~S~  158 (379)
                                       ....+..+++++++++|++++.+++++. +++. +    |+..+ +.+|.||.|.|....
T Consensus       191 -----------------~~~l~~~gv~i~~~~~v~~i~~~~~~v~~v~~~-~~~~~g~~~~-i~~D~vv~a~G~~p~  248 (320)
T 1trb_A          191 -----------------MDKVENGNIILHTNRTLEEVTGDQMGVTGVRLR-DTQNSDNIES-LDVAGLFVAIGHSPN  248 (320)
T ss_dssp             -----------------HHHHHTSSEEEECSCEEEEEEECSSSEEEEEEE-CCTTCCCCEE-EECSEEEECSCEEES
T ss_pred             -----------------HHhcccCCeEEEcCceeEEEEcCCCceEEEEEE-eccCCCceEE-EEcCEEEEEeCCCCC
Confidence                             1112236899999999999987765543 5554 4    54345 999999999997653

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=97.89  E-value=8.7e-05  Score=69.12  Aligned_cols=96  Identities=17%  Similarity=0.190  Sum_probs=70.3

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeEE
Q psy9141           6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARMI   85 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~~   85 (379)
                      ..+|+|||+|++|+-+|..|++.|.+|+++++.+....                          .+.             
T Consensus       173 ~~~v~vvG~G~~g~e~a~~l~~~g~~v~~v~~~~~~~~--------------------------~~~-------------  213 (338)
T 3itj_A          173 NKPLAVIGGGDSACEEAQFLTKYGSKVFMLVRKDHLRA--------------------------STI-------------  213 (338)
T ss_dssp             TSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSCCS--------------------------CHH-------------
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCccCC--------------------------CHH-------------
Confidence            35799999999999999999999999999998753310                          000             


Q ss_pred             EecCCcEEEeeCCCCCcHHHHhcCCCCeEEeCceEEEEEecCCeEE-EEEcc--CCceeEEEeecEEEecCCCCh
Q psy9141          86 HGQNGKLREIPYDPVHNQVELEQYPDCNIYFQHKLINLDVNSGNVT-FYRTE--DNSETKITDNQLIIGADGAYS  157 (379)
Q Consensus        86 ~~~~g~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~v~-v~~~~--~G~~~~~i~adlVV~AdG~~S  157 (379)
                                      -...+.+..|++++.++++++++.+++++. +++.+  +|+..+ +.+|.||.|.|...
T Consensus       214 ----------------~~~~l~~~~gv~i~~~~~v~~i~~~~~~~~~v~~~~~~~g~~~~-i~~D~vi~a~G~~p  271 (338)
T 3itj_A          214 ----------------MQKRAEKNEKIEILYNTVALEAKGDGKLLNALRIKNTKKNEETD-LPVSGLFYAIGHTP  271 (338)
T ss_dssp             ----------------HHHHHHHCTTEEEECSEEEEEEEESSSSEEEEEEEETTTTEEEE-EECSEEEECSCEEE
T ss_pred             ----------------HHHHHHhcCCeEEeecceeEEEEcccCcEEEEEEEECCCCceEE-EEeCEEEEEeCCCC
Confidence                            002333445899999999999998776443 55541  344445 99999999999764

>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer, GMC oxidoredu PHBH fold, rossmann domain, oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A* 3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A* 3fdy_A* ...

Probab=97.88  E-value=8.5e-06  Score=83.47  Aligned_cols=38  Identities=32%  Similarity=0.409  Sum_probs=34.6

Q ss_pred             CCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCC
Q psy9141           5 SKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIR   42 (379)
Q Consensus         5 ~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~   42 (379)
                      .++||+|||||++|+++|+.|++.|++|+|||+.+...
T Consensus        45 ~~~dvvIIG~G~aGl~aA~~l~~~G~~V~liE~~~~~g   82 (623)
T 3pl8_A           45 IKYDVVIVGSGPIGCTYARELVGAGYKVAMFDIGEIDS   82 (623)
T ss_dssp             -CEEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCS
T ss_pred             ccCCEEEECCcHHHHHHHHHHHhCCCcEEEEeccCCCC
Confidence            36899999999999999999999999999999987554

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*

Probab=97.87  E-value=7.9e-05  Score=73.75  Aligned_cols=100  Identities=17%  Similarity=0.186  Sum_probs=70.1

Q ss_pred             CCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeE
Q psy9141           5 SKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARM   84 (379)
Q Consensus         5 ~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~   84 (379)
                      ...+|+|||||++|+-+|..|++.|.+|+++|+.+.....           +.+...+.+                    
T Consensus       185 ~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~-----------~~~~~~~~l--------------------  233 (480)
T 3cgb_A          185 KVEDVTIIGGGAIGLEMAETFVELGKKVRMIERNDHIGTI-----------YDGDMAEYI--------------------  233 (480)
T ss_dssp             CCCEEEEECCHHHHHHHHHHHHHTTCEEEEECCGGGTTSS-----------SCHHHHHHH--------------------
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeCCchhhc-----------CCHHHHHHH--------------------
Confidence            3468999999999999999999999999999988643210           111111100                    


Q ss_pred             EEecCCcEEEeeCCCCCcHHHHhcCCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEEEecCCCChHH
Q psy9141          85 IHGQNGKLREIPYDPVHNQVELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAYSGV  159 (379)
Q Consensus        85 ~~~~~g~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlVV~AdG~~S~v  159 (379)
                                         ....+..|++++++++|++++.++....+.+  ++.+   +++|.||.|.|..+..
T Consensus       234 -------------------~~~l~~~Gv~i~~~~~v~~i~~~~~v~~v~~--~~~~---i~~D~vi~a~G~~p~~  284 (480)
T 3cgb_A          234 -------------------YKEADKHHIEILTNENVKAFKGNERVEAVET--DKGT---YKADLVLVSVGVKPNT  284 (480)
T ss_dssp             -------------------HHHHHHTTCEEECSCCEEEEEESSBEEEEEE--TTEE---EECSEEEECSCEEESC
T ss_pred             -------------------HHHHHHcCcEEEcCCEEEEEEcCCcEEEEEE--CCCE---EEcCEEEECcCCCcCh
Confidence                               1112235899999999999987533223444  4445   9999999999988654

>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A*

Probab=97.87  E-value=0.0001  Score=73.08  Aligned_cols=99  Identities=21%  Similarity=0.246  Sum_probs=70.6

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeEE
Q psy9141           6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARMI   85 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~~   85 (379)
                      ..+|+|||||+.|+-+|..|++.|.+|+|+|+.+.....          .+.+...+.+                     
T Consensus       194 ~~~vvVIGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~----------~~~~~~~~~l---------------------  242 (490)
T 2bc0_A          194 IKRVAVVGAGYIGVELAEAFQRKGKEVVLIDVVDTCLAG----------YYDRDLTDLM---------------------  242 (490)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTT----------TSCHHHHHHH---------------------
T ss_pred             CceEEEECCCHHHHHHHHHHHHCCCeEEEEEcccchhhh----------HHHHHHHHHH---------------------
Confidence            458999999999999999999999999999988644210          0112111111                     


Q ss_pred             EecCCcEEEeeCCCCCcHHHHhcCCCCeEEeCceEEEEEecCCeEE-EEEccCCceeEEEeecEEEecCCCChHH
Q psy9141          86 HGQNGKLREIPYDPVHNQVELEQYPDCNIYFQHKLINLDVNSGNVT-FYRTEDNSETKITDNQLIIGADGAYSGV  159 (379)
Q Consensus        86 ~~~~g~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~v~-v~~~~~G~~~~~i~adlVV~AdG~~S~v  159 (379)
                                        ....+..|++++++++|++++.+ +.+. +.+  +|++   +++|.||.|.|....+
T Consensus       243 ------------------~~~l~~~GV~i~~~~~v~~i~~~-~~v~~v~~--~g~~---i~~D~Vi~a~G~~p~~  293 (490)
T 2bc0_A          243 ------------------AKNMEEHGIQLAFGETVKEVAGN-GKVEKIIT--DKNE---YDVDMVILAVGFRPNT  293 (490)
T ss_dssp             ------------------HHHHHTTTCEEEETCCEEEEECS-SSCCEEEE--SSCE---EECSEEEECCCEEECC
T ss_pred             ------------------HHHHHhCCeEEEeCCEEEEEEcC-CcEEEEEE--CCcE---EECCEEEECCCCCcCh
Confidence                              11223368999999999999863 3332 444  5666   9999999999987654

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=97.86  E-value=0.00015  Score=66.87  Aligned_cols=97  Identities=14%  Similarity=0.084  Sum_probs=70.1

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeEE
Q psy9141           6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARMI   85 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~~   85 (379)
                      ..+|+|||+|+.|+-+|..|++.|.+|+++++.+...             ..+.             +            
T Consensus       143 ~~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~-------------~~~~-------------~------------  184 (311)
T 2q0l_A          143 NKEVAVLGGGDTAVEEAIYLANICKKVYLIHRRDGFR-------------CAPI-------------T------------  184 (311)
T ss_dssp             TSEEEEECCSHHHHHHHHHHHTTSSEEEEECSSSSCC-------------SCHH-------------H------------
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCEEEEEeeCCccC-------------CCHH-------------H------------
Confidence            3589999999999999999999999999999875331             0000             0            


Q ss_pred             EecCCcEEEeeCCCCCcHHHHhcCCCCeEEeCceEEEEEecCCeE-EEEEc--cCCceeEEEeecEEEecCCCChH
Q psy9141          86 HGQNGKLREIPYDPVHNQVELEQYPDCNIYFQHKLINLDVNSGNV-TFYRT--EDNSETKITDNQLIIGADGAYSG  158 (379)
Q Consensus        86 ~~~~g~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~v-~v~~~--~~G~~~~~i~adlVV~AdG~~S~  158 (379)
                                       ...+.+..++++++++++++++.+++++ .+.+.  .+|++.+ +.+|.||.|.|....
T Consensus       185 -----------------~~~l~~~~gv~v~~~~~v~~i~~~~~~v~~v~~~~~~~g~~~~-i~~D~vi~a~G~~p~  242 (311)
T 2q0l_A          185 -----------------LEHAKNNDKIEFLTPYVVEEIKGDASGVSSLSIKNTATNEKRE-LVVPGFFIFVGYDVN  242 (311)
T ss_dssp             -----------------HHHHHTCTTEEEETTEEEEEEEEETTEEEEEEEEETTTCCEEE-EECSEEEECSCEEEC
T ss_pred             -----------------HHHHhhCCCeEEEeCCEEEEEECCCCcEeEEEEEecCCCceEE-EecCEEEEEecCccC
Confidence                             0122223589999999999998775553 24433  1576445 999999999997643

>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A*

Probab=97.85  E-value=9.5e-06  Score=80.56  Aligned_cols=37  Identities=38%  Similarity=0.477  Sum_probs=34.3

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCC
Q psy9141           6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIR   42 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~   42 (379)
                      .+||+|||||++||++|+.|++.|++|+|+|+.+...
T Consensus        33 ~~~v~IiGaG~~Gl~aA~~l~~~g~~v~vlE~~~~~g   69 (498)
T 2iid_A           33 PKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASERPG   69 (498)
T ss_dssp             CCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSSSSB
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCeEEEEECCCCCC
Confidence            5799999999999999999999999999999987553

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5

Probab=97.84  E-value=9.6e-05  Score=68.19  Aligned_cols=96  Identities=19%  Similarity=0.199  Sum_probs=69.5

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeEEE
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARMIH   86 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~   86 (379)
                      .+|+|||+|++|+-+|..|++.|.+|+++++.+...             ...             .+             
T Consensus       145 ~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~-------------~~~-------------~~-------------  185 (310)
T 1fl2_A          145 KRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMK-------------ADQ-------------VL-------------  185 (310)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTBSEEEEECSSSSCC-------------SCH-------------HH-------------
T ss_pred             CEEEEECCCHHHHHHHHHHHHhCCEEEEEEeCcccC-------------ccH-------------HH-------------
Confidence            479999999999999999999999999999876331             000             00             


Q ss_pred             ecCCcEEEeeCCCCCcHHHHhcCCCCeEEeCceEEEEEecCCeE-EEEEc--cCCceeEEEeecEEEecCCCChH
Q psy9141          87 GQNGKLREIPYDPVHNQVELEQYPDCNIYFQHKLINLDVNSGNV-TFYRT--EDNSETKITDNQLIIGADGAYSG  158 (379)
Q Consensus        87 ~~~g~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~v-~v~~~--~~G~~~~~i~adlVV~AdG~~S~  158 (379)
                                      ...+.+..+++++.++++++++.+++.+ .+++.  .+|++.+ +.+|.||.|.|....
T Consensus       186 ----------------~~~l~~~~gv~v~~~~~v~~i~~~~~~v~~v~~~~~~~g~~~~-i~~D~vi~a~G~~p~  243 (310)
T 1fl2_A          186 ----------------QDKLRSLKNVDIILNAQTTEVKGDGSKVVGLEYRDRVSGDIHN-IELAGIFVQIGLLPN  243 (310)
T ss_dssp             ----------------HHHHHTCTTEEEESSEEEEEEEESSSSEEEEEEEETTTCCEEE-EECSEEEECSCEEES
T ss_pred             ----------------HHHHhhCCCeEEecCCceEEEEcCCCcEEEEEEEECCCCcEEE-EEcCEEEEeeCCccC
Confidence                            0122333589999999999998766544 34443  1466455 899999999997643

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.82  E-value=9.5e-06  Score=79.93  Aligned_cols=35  Identities=23%  Similarity=0.332  Sum_probs=32.4

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHhCCCcEEEEccC
Q psy9141           4 NSKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAR   38 (379)
Q Consensus         4 m~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~   38 (379)
                      +.++||+||||||+|+++|..|++.|++|+|||+.
T Consensus         3 ~~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~   37 (458)
T 1lvl_A            3 TIQTTLLIIGGGPGGYVAAIRAGQLGIPTVLVEGQ   37 (458)
T ss_dssp             CEECSEEEECCSHHHHHHHHHHHHHTCCEEEECSS
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHHCCCEEEEEccC
Confidence            34689999999999999999999999999999984

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}

Probab=97.81  E-value=1.3e-05  Score=83.19  Aligned_cols=37  Identities=35%  Similarity=0.478  Sum_probs=34.0

Q ss_pred             CCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCC
Q psy9141           5 SKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDI   41 (379)
Q Consensus         5 ~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~   41 (379)
                      .++||+||||||+|+++|+.|++.|++|+|||+.+..
T Consensus       390 ~~~~VvIIGgG~AGl~aA~~La~~G~~V~liE~~~~~  426 (690)
T 3k30_A          390 SDARVLVVGAGPSGLEAARALGVRGYDVVLAEAGRDL  426 (690)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSS
T ss_pred             ccceEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence            3579999999999999999999999999999998754

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*

Probab=97.81  E-value=1.1e-05  Score=80.29  Aligned_cols=33  Identities=18%  Similarity=0.249  Sum_probs=31.1

Q ss_pred             CCCcEEEECCChHHHHHHHHHHh-CCCcEEEEcc
Q psy9141           5 SKKSVVIVGGGLVGSLSACMFAK-NQYEVNLYEA   37 (379)
Q Consensus         5 ~~~dVvIVGaGpaGl~~A~~La~-~G~~V~viE~   37 (379)
                      .++||+||||||+|+++|+.|++ .|++|+|||+
T Consensus         2 ~~~dvvVIGgG~aGl~aA~~la~~~G~~V~liE~   35 (490)
T 1fec_A            2 RAYDLVVIGAGSGGLEAGWNAASLHKKRVAVIDL   35 (490)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHHHCCCEEEEES
T ss_pred             ccccEEEECCCHHHHHHHHHHHHHcCCEEEEEec
Confidence            46899999999999999999999 9999999994

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}

Probab=97.80  E-value=0.00012  Score=69.18  Aligned_cols=98  Identities=20%  Similarity=0.244  Sum_probs=70.2

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeEEE
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARMIH   86 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~   86 (379)
                      .+|+|||+|++|+-+|..|++.|.+|+++++.+.....             +.             +..           
T Consensus       164 ~~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~~-------------~~-------------~~~-----------  206 (360)
T 3ab1_A          164 KRVVIVGGGDSALDWTVGLIKNAASVTLVHRGHEFQGH-------------GK-------------TAH-----------  206 (360)
T ss_dssp             CEEEEECSSHHHHHHHHHTTTTSSEEEEECSSSSCSSC-------------SH-------------HHH-----------
T ss_pred             CcEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCCCCCC-------------HH-------------HHH-----------
Confidence            47999999999999999999999999999987643210             00             000           


Q ss_pred             ecCCcEEEeeCCCCCcHHHHhcCCCCeEEeCceEEEEEecCCe---EEEEEccCCceeEEEeecEEEecCCCChH
Q psy9141          87 GQNGKLREIPYDPVHNQVELEQYPDCNIYFQHKLINLDVNSGN---VTFYRTEDNSETKITDNQLIIGADGAYSG  158 (379)
Q Consensus        87 ~~~g~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~---v~v~~~~~G~~~~~i~adlVV~AdG~~S~  158 (379)
                                  ..   ....+..+++++++++|++++.++++   +++... +|+..+ +++|.||.|.|....
T Consensus       207 ------------~l---~~~~~~~gv~i~~~~~v~~i~~~~~~v~~v~~~~~-~g~~~~-i~~D~vi~a~G~~p~  264 (360)
T 3ab1_A          207 ------------EV---ERARANGTIDVYLETEVASIEESNGVLTRVHLRSS-DGSKWT-VEADRLLILIGFKSN  264 (360)
T ss_dssp             ------------SS---HHHHHHTSEEEESSEEEEEEEEETTEEEEEEEEET-TCCEEE-EECSEEEECCCBCCS
T ss_pred             ------------HH---HHHhhcCceEEEcCcCHHHhccCCCceEEEEEEec-CCCeEE-EeCCEEEECCCCCCC
Confidence                        01   11122358999999999999887664   444434 775445 999999999997653

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=97.80  E-value=0.0002  Score=66.09  Aligned_cols=98  Identities=10%  Similarity=0.114  Sum_probs=72.5

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeEE
Q psy9141           6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARMI   85 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~~   85 (379)
                      ..+|+|||+|+.|+-+|..|++.|.+|+++++.+....             .+             .+            
T Consensus       154 ~~~v~vvG~G~~~~e~a~~l~~~g~~v~~~~~~~~~~~-------------~~-------------~~------------  195 (323)
T 3f8d_A          154 NRVVAVIGGGDSALEGAEILSSYSTKVYLIHRRDTFKA-------------QP-------------IY------------  195 (323)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHSSEEEEECSSSSCCS-------------CH-------------HH------------
T ss_pred             CCEEEEECCCHHHHHHHHHHHHhCCeEEEEEeCCCCCc-------------CH-------------HH------------
Confidence            35799999999999999999999999999998764321             00             00            


Q ss_pred             EecCCcEEEeeCCCCCcHHHHhcCCCCeEEeCceEEEEEecCCeEEEEEc--cCCceeEEEeecEEEecCCCChHH
Q psy9141          86 HGQNGKLREIPYDPVHNQVELEQYPDCNIYFQHKLINLDVNSGNVTFYRT--EDNSETKITDNQLIIGADGAYSGV  159 (379)
Q Consensus        86 ~~~~g~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~--~~G~~~~~i~adlVV~AdG~~S~v  159 (379)
                                       ...+.+..+++++.++++++++.++....+++.  .+|+..+ +.+|.||.|.|.....
T Consensus       196 -----------------~~~~~~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~-~~~D~vv~a~G~~p~~  253 (323)
T 3f8d_A          196 -----------------VETVKKKPNVEFVLNSVVKEIKGDKVVKQVVVENLKTGEIKE-LNVNGVFIEIGFDPPT  253 (323)
T ss_dssp             -----------------HHHHHTCTTEEEECSEEEEEEEESSSEEEEEEEETTTCCEEE-EECSEEEECCCEECCH
T ss_pred             -----------------HHHHHhCCCcEEEeCCEEEEEeccCceeEEEEEECCCCceEE-EEcCEEEEEECCCCCh
Confidence                             022333458999999999999887654446555  1377545 9999999999987643

>1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold, alpha/beta structure, rossman 6-hydroxylated FAD, oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A {Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1 PDB: 1naa_A*

Probab=97.79  E-value=1.5e-05  Score=80.39  Aligned_cols=37  Identities=24%  Similarity=0.269  Sum_probs=33.8

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCC
Q psy9141           4 NSKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEARED   40 (379)
Q Consensus         4 m~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~   40 (379)
                      ..+||++|||+|++|+.+|..|++.|++|+|+|+.+.
T Consensus         5 ~~~~D~iIvG~G~aG~~~A~~L~~~g~~VlvlE~g~~   41 (546)
T 1kdg_A            5 ATPYDYIIVGAGPGGIIAADRLSEAGKKVLLLERGGP   41 (546)
T ss_dssp             -CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCC
T ss_pred             CCceeEEEECcCHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence            3568999999999999999999999999999999863

>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*

Probab=97.78  E-value=1.2e-05  Score=79.30  Aligned_cols=38  Identities=21%  Similarity=0.235  Sum_probs=33.9

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHh-C------CCcEEEEccCCCC
Q psy9141           4 NSKKSVVIVGGGLVGSLSACMFAK-N------QYEVNLYEAREDI   41 (379)
Q Consensus         4 m~~~dVvIVGaGpaGl~~A~~La~-~------G~~V~viE~~~~~   41 (379)
                      |+.+||+||||||+|+.+|..|++ .      |++|+|||+.+.+
T Consensus         1 m~~~~VvIIG~G~aGl~aA~~L~~~~~~~~~~g~~V~lie~~~~~   45 (456)
T 1lqt_A            1 MRPYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTP   45 (456)
T ss_dssp             -CCEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSC
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHhhCccccCCCCeEEEEecCCCC
Confidence            446899999999999999999999 7      9999999998754

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=97.75  E-value=0.0003  Score=65.61  Aligned_cols=100  Identities=15%  Similarity=0.113  Sum_probs=69.6

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeEE
Q psy9141           6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARMI   85 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~~   85 (379)
                      ..+|+|||+|+.|+-+|..|++.|.+|+++++.+....             .+...+.+                     
T Consensus       152 ~~~v~viG~G~~g~e~a~~l~~~g~~V~~v~~~~~~~~-------------~~~~~~~l---------------------  197 (335)
T 2zbw_A          152 GKRVLIVGGGDSAVDWALNLLDTARRITLIHRRPQFRA-------------HEASVKEL---------------------  197 (335)
T ss_dssp             TCEEEEECSSHHHHHHHHHTTTTSSEEEEECSSSSCCS-------------CHHHHHHH---------------------
T ss_pred             CCEEEEECCCHHHHHHHHHHHhhCCEEEEEEcCCccCc-------------cHHHHHHH---------------------
Confidence            35799999999999999999999999999998764321             01111000                     


Q ss_pred             EecCCcEEEeeCCCCCcHHHHhcCCCCeEEeCceEEEEEecCCeEEEEEc--cCCceeEEEeecEEEecCCCChH
Q psy9141          86 HGQNGKLREIPYDPVHNQVELEQYPDCNIYFQHKLINLDVNSGNVTFYRT--EDNSETKITDNQLIIGADGAYSG  158 (379)
Q Consensus        86 ~~~~g~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~--~~G~~~~~i~adlVV~AdG~~S~  158 (379)
                                        ....+..+++++.++++++++.+++...+++.  .+|+..+ +.+|.||.|.|..+.
T Consensus       198 ------------------~~~l~~~gv~v~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~-i~~D~vi~a~G~~p~  253 (335)
T 2zbw_A          198 ------------------MKAHEEGRLEVLTPYELRRVEGDERVRWAVVFHNQTQEELA-LEVDAVLILAGYITK  253 (335)
T ss_dssp             ------------------HHHHHTTSSEEETTEEEEEEEESSSEEEEEEEETTTCCEEE-EECSEEEECCCEEEE
T ss_pred             ------------------HhccccCCeEEecCCcceeEccCCCeeEEEEEECCCCceEE-EecCEEEEeecCCCC
Confidence                              11122358999999999999885442234332  2564344 999999999998764

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}

Probab=97.74  E-value=0.0002  Score=66.58  Aligned_cols=96  Identities=15%  Similarity=0.166  Sum_probs=68.8

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeEEE
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARMIH   86 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~   86 (379)
                      .+|+|||+|+.|+-+|..|++.|.+|+++++.+....             .+             .+             
T Consensus       153 ~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~-------------~~-------------~~-------------  193 (325)
T 2q7v_A          153 KKVVVIGGGDAAVEEGMFLTKFADEVTVIHRRDTLRA-------------NK-------------VA-------------  193 (325)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTTCSEEEEECSSSSCCS-------------CH-------------HH-------------
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCEEEEEeCCCcCCc-------------ch-------------HH-------------
Confidence            4799999999999999999999999999998753310             00             00             


Q ss_pred             ecCCcEEEeeCCCCCcHHHHhcCCCCeEEeCceEEEEEecCCeEEEEEc--cCCceeEEEeecEEEecCCCChH
Q psy9141          87 GQNGKLREIPYDPVHNQVELEQYPDCNIYFQHKLINLDVNSGNVTFYRT--EDNSETKITDNQLIIGADGAYSG  158 (379)
Q Consensus        87 ~~~g~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~--~~G~~~~~i~adlVV~AdG~~S~  158 (379)
                                      ...+.+..+++++++++++++..++....+.+.  .+|+..+ +.+|.||.|.|....
T Consensus       194 ----------------~~~l~~~~gv~i~~~~~v~~i~~~~~v~~v~~~~~~~g~~~~-i~~D~vi~a~G~~p~  250 (325)
T 2q7v_A          194 ----------------QARAFANPKMKFIWDTAVEEIQGADSVSGVKLRNLKTGEVSE-LATDGVFIFIGHVPN  250 (325)
T ss_dssp             ----------------HHHHHTCTTEEEECSEEEEEEEESSSEEEEEEEETTTCCEEE-EECSEEEECSCEEES
T ss_pred             ----------------HHHHHhcCCceEecCCceEEEccCCcEEEEEEEECCCCcEEE-EEcCEEEEccCCCCC
Confidence                            012223358999999999999875432234432  2676445 999999999997653

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*

Probab=97.74  E-value=0.00024  Score=70.35  Aligned_cols=102  Identities=10%  Similarity=0.072  Sum_probs=71.4

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeEEE
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARMIH   86 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~   86 (379)
                      .+|+|||||+.|+-+|..|++.|.+|+++++.....            .+.+...+.+                      
T Consensus       186 ~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~l~------------~~d~~~~~~l----------------------  231 (488)
T 3dgz_A          186 GKTLVVGASYVALECAGFLTGIGLDTTVMMRSIPLR------------GFDQQMSSLV----------------------  231 (488)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEESSCSST------------TSCHHHHHHH----------------------
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCceEEEEcCcccc------------cCCHHHHHHH----------------------
Confidence            479999999999999999999999999999864211            1112211111                      


Q ss_pred             ecCCcEEEeeCCCCCcHHHHhcCCCCeEEeCceEEEEEec-CCeEEEEEcc--CCceeEEEeecEEEecCCCChHHH
Q psy9141          87 GQNGKLREIPYDPVHNQVELEQYPDCNIYFQHKLINLDVN-SGNVTFYRTE--DNSETKITDNQLIIGADGAYSGVR  160 (379)
Q Consensus        87 ~~~g~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~-~~~v~v~~~~--~G~~~~~i~adlVV~AdG~~S~vr  160 (379)
                                       ....+..|+++++++++++++.. ++.+.+++.+  +|+..+ +.+|.||.|.|....+.
T Consensus       232 -----------------~~~l~~~gv~~~~~~~v~~i~~~~~~~~~v~~~~~~~g~~~~-~~~D~vi~a~G~~p~~~  290 (488)
T 3dgz_A          232 -----------------TEHMESHGTQFLKGCVPSHIKKLPTNQLQVTWEDHASGKEDT-GTFDTVLWAIGRVPETR  290 (488)
T ss_dssp             -----------------HHHHHHTTCEEEETEEEEEEEECTTSCEEEEEEETTTTEEEE-EEESEEEECSCEEESCG
T ss_pred             -----------------HHHHHHCCCEEEeCCEEEEEEEcCCCcEEEEEEeCCCCeeEE-EECCEEEEcccCCcccC
Confidence                             11112258999999999999874 4456666541  266545 89999999999876543

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*

Probab=97.74  E-value=1.4e-05  Score=79.64  Aligned_cols=32  Identities=19%  Similarity=0.203  Sum_probs=30.7

Q ss_pred             CCcEEEECCChHHHHHHHHHHh-CCCcEEEEcc
Q psy9141           6 KKSVVIVGGGLVGSLSACMFAK-NQYEVNLYEA   37 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La~-~G~~V~viE~   37 (379)
                      ++||+||||||+|+++|+.|++ .|++|+|||+
T Consensus         7 ~~dvvVIGgG~aGl~aA~~la~~~G~~V~liE~   39 (495)
T 2wpf_A            7 AFDLVVIGAGSGGLEAGWNAATLYGKRVAVVDV   39 (495)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHHCCCEEEEES
T ss_pred             ccCEEEECCChhHHHHHHHHHHhcCCeEEEEec
Confidence            5899999999999999999999 9999999994

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...

Probab=97.71  E-value=0.00036  Score=68.87  Aligned_cols=102  Identities=13%  Similarity=0.094  Sum_probs=72.4

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeEEE
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARMIH   86 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~   86 (379)
                      .+|+|||||+.|+-+|..|++.|.+|+++++.+..-..           +.+...+.+                      
T Consensus       188 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~-----------~d~~~~~~~----------------------  234 (478)
T 3dk9_A          188 GRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKVLRS-----------FDSMISTNC----------------------  234 (478)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTT-----------SCHHHHHHH----------------------
T ss_pred             ccEEEECCCHHHHHHHHHHHHcCCeEEEEEeCCccccc-----------cCHHHHHHH----------------------
Confidence            57999999999999999999999999999987643210           112111111                      


Q ss_pred             ecCCcEEEeeCCCCCcHHHHhcCCCCeEEeCceEEEEEecCCe--EEEEEccC---Cce--eEEEeecEEEecCCCChHH
Q psy9141          87 GQNGKLREIPYDPVHNQVELEQYPDCNIYFQHKLINLDVNSGN--VTFYRTED---NSE--TKITDNQLIIGADGAYSGV  159 (379)
Q Consensus        87 ~~~g~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~--v~v~~~~~---G~~--~~~i~adlVV~AdG~~S~v  159 (379)
                                       ....+..|++++.+++|++++.++++  +.+.+. +   |+.  .+ +++|.||.|.|....+
T Consensus       235 -----------------~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~-~~~~g~~~g~~-~~~D~vi~a~G~~p~~  295 (478)
T 3dk9_A          235 -----------------TEELENAGVEVLKFSQVKEVKKTLSGLEVSMVTA-VPGRLPVMTMI-PDVDCLLWAIGRVPNT  295 (478)
T ss_dssp             -----------------HHHHHHTTCEEETTEEEEEEEECSSSEEEEEEEC-CTTSCCEEEEE-EEESEEEECSCEEESC
T ss_pred             -----------------HHHHHHCCCEEEeCCEEEEEEEcCCCcEEEEEEc-cCCCCcccceE-EEcCEEEEeeccccCC
Confidence                             11122258999999999999876655  667766 4   321  34 9999999999987654


Q ss_pred             H
Q psy9141         160 R  160 (379)
Q Consensus       160 r  160 (379)
                      .
T Consensus       296 ~  296 (478)
T 3dk9_A          296 K  296 (478)
T ss_dssp             T
T ss_pred             C
Confidence            3

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=97.71  E-value=0.00018  Score=72.96  Aligned_cols=98  Identities=17%  Similarity=0.241  Sum_probs=71.8

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeEE
Q psy9141           6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARMI   85 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~~   85 (379)
                      ..+|+|||||+.|+-+|..|++.|.+|+++|+.+.....           +.+...+.+.                    
T Consensus       187 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~-----------~~~~~~~~l~--------------------  235 (588)
T 3ics_A          187 PRHATVIGGGFIGVEMVENLRERGIEVTLVEMANQVMPP-----------IDYEMAAYVH--------------------  235 (588)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTT-----------SCHHHHHHHH--------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCeEEEEecCCccccc-----------CCHHHHHHHH--------------------
Confidence            357999999999999999999999999999987643211           1121111111                    


Q ss_pred             EecCCcEEEeeCCCCCcHHHHhcCCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEEEecCCCChHH
Q psy9141          86 HGQNGKLREIPYDPVHNQVELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAYSGV  159 (379)
Q Consensus        86 ~~~~g~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlVV~AdG~~S~v  159 (379)
                                         ...+..|++++++++|++++.++++  +.+. +|++   +++|.||.|.|..+.+
T Consensus       236 -------------------~~l~~~GV~i~~~~~v~~i~~~~~~--v~~~-~g~~---i~~D~Vi~a~G~~p~~  284 (588)
T 3ics_A          236 -------------------EHMKNHDVELVFEDGVDALEENGAV--VRLK-SGSV---IQTDMLILAIGVQPES  284 (588)
T ss_dssp             -------------------HHHHHTTCEEECSCCEEEEEGGGTE--EEET-TSCE---EECSEEEECSCEEECC
T ss_pred             -------------------HHHHHcCCEEEECCeEEEEecCCCE--EEEC-CCCE---EEcCEEEEccCCCCCh
Confidence                               1112258999999999999876665  4556 8877   9999999999987654

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*

Probab=97.70  E-value=3e-05  Score=80.95  Aligned_cols=36  Identities=42%  Similarity=0.606  Sum_probs=33.7

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCC
Q psy9141           6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDI   41 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~   41 (379)
                      .+||+||||||+|+++|..|++.|++|+|||+.+..
T Consensus       389 ~~~VvIIGgGpAGl~aA~~L~~~G~~Vtlie~~~~~  424 (729)
T 1o94_A          389 KDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEKI  424 (729)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSST
T ss_pred             CceEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCc
Confidence            579999999999999999999999999999998754

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=97.70  E-value=0.00036  Score=65.00  Aligned_cols=96  Identities=15%  Similarity=0.167  Sum_probs=69.1

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeEEE
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARMIH   86 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~   86 (379)
                      .+|+|||+|+.|+-+|..|++.|.+|+++++.+....             ..             .+             
T Consensus       160 ~~v~VvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~-------------~~-------------~~-------------  200 (333)
T 1vdc_A          160 KPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDAFRA-------------SK-------------IM-------------  200 (333)
T ss_dssp             SEEEEECCSHHHHHHHHHHTTTSSEEEEECSSSSCCS-------------CH-------------HH-------------
T ss_pred             CeEEEECCChHHHHHHHHHHhcCCeEEEEecCCcCCc-------------cH-------------HH-------------
Confidence            4799999999999999999999999999998753310             00             00             


Q ss_pred             ecCCcEEEeeCCCCCcHHHHhcCCCCeEEeCceEEEEEecCC--eEE-EEEc--cCCceeEEEeecEEEecCCCChH
Q psy9141          87 GQNGKLREIPYDPVHNQVELEQYPDCNIYFQHKLINLDVNSG--NVT-FYRT--EDNSETKITDNQLIIGADGAYSG  158 (379)
Q Consensus        87 ~~~g~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~--~v~-v~~~--~~G~~~~~i~adlVV~AdG~~S~  158 (379)
                                      .....+..++++++++++++++.+++  .+. +.+.  .+|+..+ +.+|.||.|.|....
T Consensus       201 ----------------~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~v~~~~~~~g~~~~-i~~D~vi~a~G~~p~  260 (333)
T 1vdc_A          201 ----------------QQRALSNPKIDVIWNSSVVEAYGDGERDVLGGLKVKNVVTGDVSD-LKVSGLFFAIGHEPA  260 (333)
T ss_dssp             ----------------HHHHHTCTTEEEECSEEEEEEEESSSSSSEEEEEEEETTTCCEEE-EECSEEEECSCEEES
T ss_pred             ----------------HHHHHhCCCeeEecCCceEEEeCCCCccceeeEEEEecCCCceEE-EecCEEEEEeCCccc
Confidence                            01222346899999999999987764  332 4433  1464445 999999999997653

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=97.70  E-value=2.2e-05  Score=79.99  Aligned_cols=34  Identities=18%  Similarity=0.222  Sum_probs=31.9

Q ss_pred             CCCcEEEECCChHHHHHHHHHHhCCCcEEEEccC
Q psy9141           5 SKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAR   38 (379)
Q Consensus         5 ~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~   38 (379)
                      ..+||+||||||+|+++|..|++.|++|+|||+.
T Consensus       106 ~~~dvvVIG~GpAGl~aA~~l~~~g~~v~liE~~  139 (598)
T 2x8g_A          106 YDYDLIVIGGGSGGLAAGKEAAKYGAKTAVLDYV  139 (598)
T ss_dssp             SSEEEEEECCSHHHHHHHHHHHHTTCCEEEECCC
T ss_pred             ccccEEEECCCccHHHHHHHHHhCCCeEEEEecc
Confidence            3589999999999999999999999999999984

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}

Probab=97.70  E-value=0.00019  Score=70.69  Aligned_cols=101  Identities=16%  Similarity=0.172  Sum_probs=73.1

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeEEE
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARMIH   86 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~   86 (379)
                      .+|+|||||+.|+-+|..|++.|.+|+++++.+.....          .+.+...+.+++                    
T Consensus       173 ~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~----------~~d~~~~~~l~~--------------------  222 (466)
T 3l8k_A          173 QDMVIIGAGYIGLEIASIFRLMGVQTHIIEMLDRALIT----------LEDQDIVNTLLS--------------------  222 (466)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTT----------SCCHHHHHHHHH--------------------
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCEEEEEEeCCcCCCC----------CCCHHHHHHHHh--------------------
Confidence            57999999999999999999999999999988644211          012221111110                    


Q ss_pred             ecCCcEEEeeCCCCCcHHHHhcCCCCeEEeCceEEEEEecC-CeEEEEEcc-CCceeEEEeecEEEecCCCChHHH
Q psy9141          87 GQNGKLREIPYDPVHNQVELEQYPDCNIYFQHKLINLDVNS-GNVTFYRTE-DNSETKITDNQLIIGADGAYSGVR  160 (379)
Q Consensus        87 ~~~g~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~-~~v~v~~~~-~G~~~~~i~adlVV~AdG~~S~vr  160 (379)
                                         ..   .++++.+++|++++.++ +++.+.+.+ +|+..+ +++|.||.|.|....+.
T Consensus       223 -------------------~l---~v~i~~~~~v~~i~~~~~~~v~v~~~~~~G~~~~-i~~D~vi~a~G~~p~~~  275 (466)
T 3l8k_A          223 -------------------IL---KLNIKFNSPVTEVKKIKDDEYEVIYSTKDGSKKS-IFTNSVVLAAGRRPVIP  275 (466)
T ss_dssp             -------------------HH---CCCEECSCCEEEEEEEETTEEEEEECCTTSCCEE-EEESCEEECCCEEECCC
T ss_pred             -------------------cC---EEEEEECCEEEEEEEcCCCcEEEEEEecCCceEE-EEcCEEEECcCCCcccc
Confidence                               01   17788899999998877 788877762 466334 99999999999987654

>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A*

Probab=97.68  E-value=3.2e-05  Score=76.33  Aligned_cols=43  Identities=16%  Similarity=0.190  Sum_probs=38.7

Q ss_pred             CCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEEEecCCCCh
Q psy9141         111 DCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAYS  157 (379)
Q Consensus       111 gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlVV~AdG~~S  157 (379)
                      +++|+++++|++|+.++++++|++. +|++   ++||.||.|.+...
T Consensus       228 ~~~i~~~~~V~~i~~~~~~v~v~~~-~g~~---~~ad~vI~a~~~~~  270 (472)
T 1b37_A          228 DPRLQLNKVVREIKYSPGGVTVKTE-DNSV---YSADYVMVSASLGV  270 (472)
T ss_dssp             CTTEESSCCEEEEEECSSCEEEEET-TSCE---EEESEEEECSCHHH
T ss_pred             ccEEEcCCEEEEEEEcCCcEEEEEC-CCCE---EEcCEEEEecCHHH
Confidence            5789999999999999899999998 8877   99999999998754

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}

Probab=97.66  E-value=0.00025  Score=65.22  Aligned_cols=94  Identities=16%  Similarity=0.146  Sum_probs=69.9

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeEEE
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARMIH   86 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~   86 (379)
                      .+|+|||+|+.|+-+|..|++.|.+|+++++.+....             .+.   .+                      
T Consensus       148 ~~v~viG~g~~~~e~a~~l~~~g~~v~~~~~~~~~~~-------------~~~---~~----------------------  189 (315)
T 3r9u_A          148 KEVAVLGGGDTALEEALYLANICSKIYLIHRRDEFRA-------------APS---TV----------------------  189 (315)
T ss_dssp             SEEEEECCBHHHHHHHHHHHTTSSEEEEECSSSSCBS-------------CHH---HH----------------------
T ss_pred             CEEEEECCCHHHHHHHHHHHhhCCEEEEEEeCCCCCC-------------CHH---HH----------------------
Confidence            5799999999999999999999999999998764310             000   00                      


Q ss_pred             ecCCcEEEeeCCCCCcHHHHhcCCCCeEEeCceEEEEEecCCe---EEEEEccCCceeEEEeecEEEecCCCCh
Q psy9141          87 GQNGKLREIPYDPVHNQVELEQYPDCNIYFQHKLINLDVNSGN---VTFYRTEDNSETKITDNQLIIGADGAYS  157 (379)
Q Consensus        87 ~~~g~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~---v~v~~~~~G~~~~~i~adlVV~AdG~~S  157 (379)
                                       ....+..++++++++++++++.++++   +++... +|+..+ +.+|.||.|.|...
T Consensus       190 -----------------~~~~~~~gv~~~~~~~v~~i~~~~~~~~~v~~~~~-~g~~~~-~~~D~vv~a~G~~p  244 (315)
T 3r9u_A          190 -----------------EKVKKNEKIELITSASVDEVYGDKMGVAGVKVKLK-DGSIRD-LNVPGIFTFVGLNV  244 (315)
T ss_dssp             -----------------HHHHHCTTEEEECSCEEEEEEEETTEEEEEEEECT-TSCEEE-ECCSCEEECSCEEE
T ss_pred             -----------------HHHHhcCCeEEEeCcEEEEEEcCCCcEEEEEEEcC-CCCeEE-eecCeEEEEEcCCC
Confidence                             11222468999999999999887754   444444 776445 99999999999754

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}

Probab=97.64  E-value=0.0003  Score=68.89  Aligned_cols=97  Identities=25%  Similarity=0.301  Sum_probs=68.5

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeEEE
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARMIH   86 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~   86 (379)
                      .+|+|||||+.|+-+|..|++.|.+|+++|+.+.....          .+.+...+.+                      
T Consensus       149 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~----------~~~~~~~~~l----------------------  196 (449)
T 3kd9_A          149 ENVVIIGGGYIGIEMAEAFAAQGKNVTMIVRGERVLRR----------SFDKEVTDIL----------------------  196 (449)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTT----------TSCHHHHHHH----------------------
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCeEEEEEcCCccchh----------hcCHHHHHHH----------------------
Confidence            48999999999999999999999999999988644210          0111111111                      


Q ss_pred             ecCCcEEEeeCCCCCcHHHHhcCCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEEEecCCCChH
Q psy9141          87 GQNGKLREIPYDPVHNQVELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAYSG  158 (379)
Q Consensus        87 ~~~g~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlVV~AdG~~S~  158 (379)
                                       ....+.. ++++.++.+++++.++ ++..... +|++   +++|.||.|.|....
T Consensus       197 -----------------~~~l~~~-v~i~~~~~v~~i~~~~-~v~~v~~-~g~~---i~~D~Vv~a~G~~p~  245 (449)
T 3kd9_A          197 -----------------EEKLKKH-VNLRLQEITMKIEGEE-RVEKVVT-DAGE---YKAELVILATGIKPN  245 (449)
T ss_dssp             -----------------HHHHTTT-SEEEESCCEEEEECSS-SCCEEEE-TTEE---EECSEEEECSCEEEC
T ss_pred             -----------------HHHHHhC-cEEEeCCeEEEEeccC-cEEEEEe-CCCE---EECCEEEEeeCCccC
Confidence                             1112224 8899999999987655 4433344 7766   999999999998754

>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A

Probab=97.62  E-value=4.2e-05  Score=78.88  Aligned_cols=37  Identities=30%  Similarity=0.498  Sum_probs=34.0

Q ss_pred             CCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCC
Q psy9141           5 SKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDI   41 (379)
Q Consensus         5 ~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~   41 (379)
                      ..+||+|||||++|+++|+.|++.|++|+|+|+.+.+
T Consensus       106 ~~~~v~viG~G~~gl~~a~~l~~~g~~v~~~e~~~~~  142 (662)
T 2z3y_A          106 KTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRV  142 (662)
T ss_dssp             CCCEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             CCCeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence            3579999999999999999999999999999998754

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1

Probab=97.62  E-value=4.3e-05  Score=78.98  Aligned_cols=36  Identities=33%  Similarity=0.472  Sum_probs=33.6

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCC
Q psy9141           6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDI   41 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~   41 (379)
                      .+||+||||||+|+.+|..|++.|++|+|||+.+..
T Consensus       373 ~~~vvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~  408 (671)
T 1ps9_A          373 KKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEI  408 (671)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCC
Confidence            579999999999999999999999999999998754

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}

Probab=97.60  E-value=0.00031  Score=65.71  Aligned_cols=96  Identities=16%  Similarity=0.223  Sum_probs=68.2

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeEE
Q psy9141           6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARMI   85 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~~   85 (379)
                      ..+|+|||+|+.|+-+|..|++.|.+|+++++.+....     .        .                           
T Consensus       155 ~~~v~ViG~G~~g~e~a~~l~~~g~~V~l~~~~~~~~~-----~--------~---------------------------  194 (335)
T 2a87_A          155 DQDIAVIGGGDSAMEEATFLTRFARSVTLVHRRDEFRA-----S--------K---------------------------  194 (335)
T ss_dssp             TCEEEEECSSHHHHHHHHHHTTTCSEEEEECSSSSCSS-----C--------T---------------------------
T ss_pred             CCEEEEECCCHHHHHHHHHHHHhCCeEEEEEcCCcCCc-----c--------H---------------------------
Confidence            35799999999999999999999999999998753210     0        0                           


Q ss_pred             EecCCcEEEeeCCCCCcHHHHhcCCCCeEEeCceEEEEEecCC--eEEEEEccCCceeEEEeecEEEecCCCCh
Q psy9141          86 HGQNGKLREIPYDPVHNQVELEQYPDCNIYFQHKLINLDVNSG--NVTFYRTEDNSETKITDNQLIIGADGAYS  157 (379)
Q Consensus        86 ~~~~g~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~--~v~v~~~~~G~~~~~i~adlVV~AdG~~S  157 (379)
                                    . -.....+..++++++++++++++.+++  ++.+....+|+..+ +.+|.||.|.|...
T Consensus       195 --------------~-~~~~~~~~~gV~v~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~-i~~D~vi~a~G~~p  252 (335)
T 2a87_A          195 --------------I-MLDRARNNDKIRFLTNHTVVAVDGDTTVTGLRVRDTNTGAETT-LPVTGVFVAIGHEP  252 (335)
T ss_dssp             --------------T-HHHHHHHCTTEEEECSEEEEEEECSSSCCEEEEEEETTSCCEE-ECCSCEEECSCEEE
T ss_pred             --------------H-HHHHHhccCCcEEEeCceeEEEecCCcEeEEEEEEcCCCceEE-eecCEEEEccCCcc
Confidence                          0 001222346899999999999987653  35554321454344 99999999999754

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}

Probab=97.58  E-value=0.00022  Score=66.13  Aligned_cols=95  Identities=15%  Similarity=0.183  Sum_probs=68.0

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeEEE
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARMIH   86 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~   86 (379)
                      .+|+|||+|+.|+-+|..|++.|.+|+++++.+....             ..             .+.            
T Consensus       156 ~~v~viG~G~~g~e~a~~l~~~g~~V~~i~~~~~~~~-------------~~-------------~l~------------  197 (319)
T 3cty_A          156 KRVVTIGGGNSGAIAAISMSEYVKNVTIIEYMPKYMC-------------EN-------------AYV------------  197 (319)
T ss_dssp             SEEEEECCSHHHHHHHHHHTTTBSEEEEECSSSSCCS-------------CH-------------HHH------------
T ss_pred             CeEEEECCCHHHHHHHHHHHhhCCcEEEEEcCCccCC-------------CH-------------HHH------------
Confidence            4799999999999999999999999999998753210             00             000            


Q ss_pred             ecCCcEEEeeCCCCCcHHHHhcCCCCeEEeCceEEEEEecCC---eEEEEEccCCceeEEEeecEEEecCCCChH
Q psy9141          87 GQNGKLREIPYDPVHNQVELEQYPDCNIYFQHKLINLDVNSG---NVTFYRTEDNSETKITDNQLIIGADGAYSG  158 (379)
Q Consensus        87 ~~~g~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~---~v~v~~~~~G~~~~~i~adlVV~AdG~~S~  158 (379)
                                       ..+. ..++++++++++++++.+++   ++.+....+|+..+ +.+|.||.|.|....
T Consensus       198 -----------------~~l~-~~gv~i~~~~~v~~i~~~~~~v~~v~~~~~~~g~~~~-i~~D~vi~a~G~~p~  253 (319)
T 3cty_A          198 -----------------QEIK-KRNIPYIMNAQVTEIVGDGKKVTGVKYKDRTTGEEKL-IETDGVFIYVGLIPQ  253 (319)
T ss_dssp             -----------------HHHH-HTTCCEECSEEEEEEEESSSSEEEEEEEETTTCCEEE-ECCSEEEECCCEEEC
T ss_pred             -----------------HHHh-cCCcEEEcCCeEEEEecCCceEEEEEEEEcCCCceEE-EecCEEEEeeCCccC
Confidence                             1111 25889999999999987755   23343212576445 999999999997653

>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A

Probab=97.58  E-value=5.7e-05  Score=79.78  Aligned_cols=36  Identities=31%  Similarity=0.511  Sum_probs=33.6

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCC
Q psy9141           6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDI   41 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~   41 (379)
                      .++|+|||||++||++|+.|++.|++|+|+|+.+.+
T Consensus       278 ~~~v~viG~G~aGl~~A~~l~~~g~~v~v~E~~~~~  313 (852)
T 2xag_A          278 TGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRV  313 (852)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCcEEEEEecCcC
Confidence            579999999999999999999999999999998754

>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*

Probab=97.52  E-value=0.00033  Score=68.41  Aligned_cols=95  Identities=11%  Similarity=0.135  Sum_probs=67.7

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeEEE
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARMIH   86 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~   86 (379)
                      .+|+|||||+.|+-+|..|++.|.+|+|+|+.+.....  .+         +...+.+                      
T Consensus       148 ~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~ll~~--~d---------~~~~~~~----------------------  194 (437)
T 4eqs_A          148 DKVLVVGAGYVSLEVLENLYERGLHPTLIHRSDKINKL--MD---------ADMNQPI----------------------  194 (437)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSCCSTT--SC---------GGGGHHH----------------------
T ss_pred             cEEEEECCccchhhhHHHHHhcCCcceeeeeecccccc--cc---------chhHHHH----------------------
Confidence            47999999999999999999999999999988654311  11         1100000                      


Q ss_pred             ecCCcEEEeeCCCCCcHHHHhcCCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEEEecCCCChHH
Q psy9141          87 GQNGKLREIPYDPVHNQVELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAYSGV  159 (379)
Q Consensus        87 ~~~g~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlVV~AdG~~S~v  159 (379)
                                       ....+..+++++++++|++++.  +.  +.+. +|++   +++|+||.|.|+...+
T Consensus       195 -----------------~~~l~~~gV~i~~~~~v~~~~~--~~--v~~~-~g~~---~~~D~vl~a~G~~Pn~  242 (437)
T 4eqs_A          195 -----------------LDELDKREIPYRLNEEINAING--NE--ITFK-SGKV---EHYDMIIEGVGTHPNS  242 (437)
T ss_dssp             -----------------HHHHHHTTCCEEESCCEEEEET--TE--EEET-TSCE---EECSEEEECCCEEESC
T ss_pred             -----------------HHHhhccceEEEeccEEEEecC--Ce--eeec-CCeE---EeeeeEEEEeceecCc
Confidence                             1111224788888988888753  33  5566 8887   9999999999987643

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.51  E-value=0.00025  Score=67.60  Aligned_cols=94  Identities=19%  Similarity=0.292  Sum_probs=67.3

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeEEE
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARMIH   86 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~   86 (379)
                      .+|+|||||++|+-+|..|++.|.+|+++|+.+....            +.+...+.+.                     
T Consensus       144 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~------------~~~~~~~~l~---------------------  190 (367)
T 1xhc_A          144 GEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAMFLG------------LDEELSNMIK---------------------  190 (367)
T ss_dssp             SEEEEEECSHHHHHHHHHHHHTTCEEEEECSSSCCTT------------CCHHHHHHHH---------------------
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCEEEEEeCCCeecc------------CCHHHHHHHH---------------------
Confidence            4799999999999999999999999999998864321            1111111110                     


Q ss_pred             ecCCcEEEeeCCCCCcHHHHhcCCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEEEecCCCChHHH
Q psy9141          87 GQNGKLREIPYDPVHNQVELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAYSGVR  160 (379)
Q Consensus        87 ~~~g~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlVV~AdG~~S~vr  160 (379)
                                       ..+. ..|++++++++|++++  .++  +.+. +|+    +++|.||.|.|..+.+.
T Consensus       191 -----------------~~l~-~~gV~i~~~~~v~~i~--~~~--v~~~-~g~----i~~D~vi~a~G~~p~~~  237 (367)
T 1xhc_A          191 -----------------DMLE-ETGVKFFLNSELLEAN--EEG--VLTN-SGF----IEGKVKICAIGIVPNVD  237 (367)
T ss_dssp             -----------------HHHH-HTTEEEECSCCEEEEC--SSE--EEET-TEE----EECSCEEEECCEEECCH
T ss_pred             -----------------HHHH-HCCCEEEcCCEEEEEE--eeE--EEEC-CCE----EEcCEEEECcCCCcCHH
Confidence                             1122 2588999999999887  333  4556 764    78999999999887653

>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*

Probab=97.51  E-value=6.2e-05  Score=80.90  Aligned_cols=37  Identities=24%  Similarity=0.363  Sum_probs=34.0

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCC
Q psy9141           6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIR   42 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~   42 (379)
                      ++||+||||||+|+++|..|++.|++|+|||+.+...
T Consensus       128 ~~dVvVIGaGpAGl~AA~~la~~G~~V~lie~~~~~G  164 (965)
T 2gag_A          128 HTDVLVVGAGPAGLAAAREASRSGARVMLLDERAEAG  164 (965)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSS
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCC
Confidence            4799999999999999999999999999999987553

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=97.49  E-value=7.5e-05  Score=80.81  Aligned_cols=36  Identities=19%  Similarity=0.496  Sum_probs=33.0

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCC-cEEEEccCCCC
Q psy9141           6 KKSVVIVGGGLVGSLSACMFAKNQY-EVNLYEAREDI   41 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La~~G~-~V~viE~~~~~   41 (379)
                      .+||+||||||+|+++|..|++.|+ +|+|||+.+..
T Consensus       187 ~~~VvVIGgGpAGl~aA~~L~~~G~~~Vtv~E~~~~~  223 (1025)
T 1gte_A          187 SAKIALLGAGPASISCASFLARLGYSDITIFEKQEYV  223 (1025)
T ss_dssp             GCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSC
T ss_pred             CCEEEEECccHHHHHHHHHHHhcCCCcEEEEeCCCCC
Confidence            4699999999999999999999999 79999998644

>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*

Probab=97.49  E-value=7.1e-05  Score=73.76  Aligned_cols=36  Identities=25%  Similarity=0.389  Sum_probs=33.4

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCC--CcEEEEccCCCC
Q psy9141           6 KKSVVIVGGGLVGSLSACMFAKNQ--YEVNLYEAREDI   41 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La~~G--~~V~viE~~~~~   41 (379)
                      .+||+||||||+|+.+|..|++.|  ++|+|||+.+.+
T Consensus         6 ~~~vvIIG~G~aGl~aA~~l~~~g~~~~V~vie~~~~~   43 (460)
T 1cjc_A            6 TPQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVP   43 (460)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSS
T ss_pred             CceEEEECcCHHHHHHHHHHHhcCCCCCEEEEeCCCcC
Confidence            579999999999999999999998  999999998755

>1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond, cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A {Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A* 3gdn_A*

Probab=97.49  E-value=4.2e-05  Score=76.90  Aligned_cols=34  Identities=32%  Similarity=0.447  Sum_probs=32.2

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCC
Q psy9141           6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEARED   40 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~   40 (379)
                      +||+||||||++|+.+|..|++ |.+|+|||+.+.
T Consensus        26 ~yD~IIVGsG~AG~v~A~rLse-g~~VlvLEaG~~   59 (536)
T 1ju2_A           26 SYDYVIVGGGTSGCPLAATLSE-KYKVLVLERGSL   59 (536)
T ss_dssp             EEEEEEECCSTTHHHHHHHHTT-TSCEEEECSSBC
T ss_pred             cccEEEECccHHHHHHHHHHhc-CCcEEEEecCCC
Confidence            5899999999999999999999 999999999864

>1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP: c.3.1.2 d.16.1.1

Probab=97.46  E-value=7.8e-05  Score=75.77  Aligned_cols=38  Identities=24%  Similarity=0.281  Sum_probs=34.5

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHh-CCCcEEEEccCCCC
Q psy9141           4 NSKKSVVIVGGGLVGSLSACMFAK-NQYEVNLYEAREDI   41 (379)
Q Consensus         4 m~~~dVvIVGaGpaGl~~A~~La~-~G~~V~viE~~~~~   41 (379)
                      +.++|++|||+|++|+.+|..|++ .|.+|+|||+....
T Consensus        22 ~~~~d~iivG~G~~g~~~a~~l~~~~~~~v~~~e~g~~~   60 (587)
T 1gpe_A           22 GKTYDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFYE   60 (587)
T ss_dssp             TCEEEEEEECCSHHHHHHHHHHHTSTTCCEEEEESSCCC
T ss_pred             cccCCEEEECcCHHHHHHHHHHHhCCCCcEEEEecCCcc
Confidence            356899999999999999999999 79999999998654

>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism, oxidoreductase, atomic RESO; HET: FAD; 0.92A {Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A* 1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A* 1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A*

Probab=97.45  E-value=7.2e-05  Score=74.59  Aligned_cols=37  Identities=16%  Similarity=0.210  Sum_probs=33.7

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCC
Q psy9141           4 NSKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEARED   40 (379)
Q Consensus         4 m~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~   40 (379)
                      +.++|++|||+|++|+.+|..|++.|++|+|+|+...
T Consensus         3 ~~~~d~~iiG~G~~g~~~a~~l~~~~~~v~~~e~~~~   39 (504)
T 1n4w_A            3 GGYVPAVVIGTGYGAAVSALRLGEAGVQTLMLEMGQL   39 (504)
T ss_dssp             -CEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCC
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCC
Confidence            3568999999999999999999999999999999873

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*

Probab=97.42  E-value=0.00043  Score=69.58  Aligned_cols=35  Identities=14%  Similarity=0.259  Sum_probs=32.8

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCC
Q psy9141           6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEARED   40 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~   40 (379)
                      ..+|+|||+|.+|+-+|..|++.|.+|+++++.+.
T Consensus       178 ~krV~VIG~G~sgve~a~~l~~~~~~Vtv~~r~~~  212 (540)
T 3gwf_A          178 GRRVGVIGTGSTGQQVITSLAPEVEHLTVFVRTPQ  212 (540)
T ss_dssp             TSEEEEECCSHHHHHHHHHHTTTCSEEEEEESSCC
T ss_pred             cceEEEECCCchHHHHHHHHHhhCCEEEEEECCCC
Confidence            45899999999999999999999999999999975

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}

Probab=97.40  E-value=0.00013  Score=70.23  Aligned_cols=35  Identities=20%  Similarity=0.196  Sum_probs=32.5

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCC
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDI   41 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~   41 (379)
                      .+|+|||||+.|+-+|..|++.|.+|+|+|+.+..
T Consensus       147 ~~vvVIGgG~~g~E~A~~l~~~g~~Vtvv~~~~~~  181 (385)
T 3klj_A          147 GKAFIIGGGILGIELAQAIIDSGTPASIGIILEYP  181 (385)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCeEEEEEcCCcc
Confidence            47999999999999999999999999999998754

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*

Probab=97.39  E-value=0.0014  Score=65.50  Aligned_cols=100  Identities=14%  Similarity=0.102  Sum_probs=66.9

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeEEE
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARMIH   86 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~   86 (379)
                      .+|+|||||+.|+-+|..|++.|.+|+++++.....            .+.+...+.+                      
T Consensus       211 ~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~l~------------~~d~~~~~~~----------------------  256 (519)
T 3qfa_A          211 GKTLVVGASYVALECAGFLAGIGLDVTVMVRSILLR------------GFDQDMANKI----------------------  256 (519)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEESSCSST------------TSCHHHHHHH----------------------
T ss_pred             CeEEEECCcHHHHHHHHHHHHcCCeEEEEecccccc------------cCCHHHHHHH----------------------
Confidence            469999999999999999999999999999752111            1112211111                      


Q ss_pred             ecCCcEEEeeCCCCCcHHHHhcCCCCeEEeCceEEEEEecC----CeEEEE--EccCCc-eeEEEeecEEEecCCCChHH
Q psy9141          87 GQNGKLREIPYDPVHNQVELEQYPDCNIYFQHKLINLDVNS----GNVTFY--RTEDNS-ETKITDNQLIIGADGAYSGV  159 (379)
Q Consensus        87 ~~~g~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~----~~v~v~--~~~~G~-~~~~i~adlVV~AdG~~S~v  159 (379)
                                       ....+..|++++.++++++++..+    +.+.++  .. +|. ..+ +.+|.||.|.|+...+
T Consensus       257 -----------------~~~l~~~GV~v~~~~~v~~v~~~~~~~~~~~~v~~~~~-~g~~~~~-~~~D~vi~a~G~~p~~  317 (519)
T 3qfa_A          257 -----------------GEHMEEHGIKFIRQFVPIKVEQIEAGTPGRLRVVAQST-NSEEIIE-GEYNTVMLAIGRDACT  317 (519)
T ss_dssp             -----------------HHHHHHTTCEEEESEEEEEEEEEECCTTCEEEEEEEES-SSSCEEE-EEESEEEECSCEEESC
T ss_pred             -----------------HHHHHHCCCEEEeCCeEEEEEEccCCCCceEEEEEEEC-CCcEEEE-EECCEEEEecCCcccC
Confidence                             111122588899998888776533    344443  44 553 234 7899999999987654

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*

Probab=97.38  E-value=0.0008  Score=67.66  Aligned_cols=35  Identities=20%  Similarity=0.315  Sum_probs=32.7

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCC
Q psy9141           6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEARED   40 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~   40 (379)
                      ..+|+|||+|++|+-+|..|++.+.+|+|+++.+.
T Consensus       185 ~krV~VIG~G~tgve~a~~la~~~~~Vtv~~r~~~  219 (545)
T 3uox_A          185 GKRVGVIGTGATGVQIIPIAAETAKELYVFQRTPN  219 (545)
T ss_dssp             TCEEEEECCSHHHHHHHHHHTTTBSEEEEEESSCC
T ss_pred             CCeEEEECCCccHHHHHHHHHhhCCEEEEEEcCCC
Confidence            35899999999999999999999999999999985

>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD; 1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1 PDB: 3cox_A*

Probab=97.36  E-value=0.00013  Score=72.75  Aligned_cols=37  Identities=14%  Similarity=0.337  Sum_probs=33.9

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCC
Q psy9141           4 NSKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEARED   40 (379)
Q Consensus         4 m~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~   40 (379)
                      +.++|++|||+|++|+.+|..|++.|.+|+|+|+...
T Consensus         9 ~~~~d~~iiG~G~~g~~~a~~l~~~~~~v~~~e~~~~   45 (507)
T 1coy_A            9 GDRVPALVIGSGYGGAVAALRLTQAGIPTQIVEMGRS   45 (507)
T ss_dssp             TCEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCC
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHHCCCcEEEEECCCC
Confidence            3468999999999999999999999999999999863

>3fim_B ARYL-alcohol oxidase; AAO, lignin degradation, oxidoreductase, flavoprotein; HET: FAD; 2.55A {Pleurotus eryngii}

Probab=97.33  E-value=8.2e-05  Score=75.20  Aligned_cols=36  Identities=25%  Similarity=0.295  Sum_probs=33.1

Q ss_pred             CCcEEEECCChHHHHHHHHHHh-CCCcEEEEccCCCC
Q psy9141           6 KKSVVIVGGGLVGSLSACMFAK-NQYEVNLYEAREDI   41 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La~-~G~~V~viE~~~~~   41 (379)
                      +||+||||||.+|+.+|..|++ .+.+|+|||+.+..
T Consensus         2 ~yD~IIVG~G~aG~v~A~rLse~~~~~VlllEaG~~~   38 (566)
T 3fim_B            2 DFDYVVVGAGNAGNVVAARLTEDPDVSVLVLEAGVSD   38 (566)
T ss_dssp             CEEEEESCCSTTHHHHHHHHTTSTTCCEEEECSSBCC
T ss_pred             CcCEEEECCcHHHHHHHHHHHhCcCCcEEEEecCCcc
Confidence            5899999999999999999999 69999999998754

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=97.30  E-value=0.00077  Score=62.38  Aligned_cols=95  Identities=18%  Similarity=0.143  Sum_probs=68.3

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeEE
Q psy9141           6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARMI   85 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~~   85 (379)
                      ..+|+|||+|+.|+-+|..|++.|.+|+++++.+.....             ...            +            
T Consensus       154 ~~~v~vvG~g~~~~e~a~~l~~~~~~v~~~~~~~~~~~~-------------~~~------------~------------  196 (332)
T 3lzw_A          154 GRRVAILGGGDSAVDWALMLEPIAKEVSIIHRRDKFRAH-------------EHS------------V------------  196 (332)
T ss_dssp             TCEEEEECSSHHHHHHHHHHTTTBSEEEEECSSSSCSSC-------------HHH------------H------------
T ss_pred             CCEEEEECCCHhHHHHHHHHHhhCCeEEEEEecCcCCcc-------------HHH------------H------------
Confidence            357999999999999999999999999999987643110             000            0            


Q ss_pred             EecCCcEEEeeCCCCCcHHHHhcCCCCeEEeCceEEEEEecCCeEEEEEc--cCCceeEEEeecEEEecCCCCh
Q psy9141          86 HGQNGKLREIPYDPVHNQVELEQYPDCNIYFQHKLINLDVNSGNVTFYRT--EDNSETKITDNQLIIGADGAYS  157 (379)
Q Consensus        86 ~~~~g~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~--~~G~~~~~i~adlVV~AdG~~S  157 (379)
                                        ..+. ..+++++.++++++++.+++...+.+.  .+|+..+ +.+|.||.|.|...
T Consensus       197 ------------------~~l~-~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~-~~~D~vv~a~G~~p  250 (332)
T 3lzw_A          197 ------------------ENLH-ASKVNVLTPFVPAELIGEDKIEQLVLEEVKGDRKEI-LEIDDLIVNYGFVS  250 (332)
T ss_dssp             ------------------HHHH-HSSCEEETTEEEEEEECSSSCCEEEEEETTSCCEEE-EECSEEEECCCEEC
T ss_pred             ------------------HHHh-cCCeEEEeCceeeEEecCCceEEEEEEecCCCceEE-EECCEEEEeeccCC
Confidence                              1111 258899999999999877664444444  1334445 99999999999664

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=97.30  E-value=0.002  Score=65.34  Aligned_cols=100  Identities=14%  Similarity=0.077  Sum_probs=66.5

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeEEE
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARMIH   86 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~   86 (379)
                      -+|+|||||++|+-+|..|++.|.+|+++++.....            .+.+...+.+.+                    
T Consensus       287 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~l~------------~~d~~~~~~~~~--------------------  334 (598)
T 2x8g_A          287 GKTLVIGASYVALECAGFLASLGGDVTVMVRSILLR------------GFDQQMAEKVGD--------------------  334 (598)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEESSCSST------------TSCHHHHHHHHH--------------------
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCEEEEEECCcCcC------------cCCHHHHHHHHH--------------------
Confidence            479999999999999999999999999999872111            011222111111                    


Q ss_pred             ecCCcEEEeeCCCCCcHHHHhcCCCCeEEeCceEEEEEec------C---CeEEEE--EccCCceeEEEeecEEEecCCC
Q psy9141          87 GQNGKLREIPYDPVHNQVELEQYPDCNIYFQHKLINLDVN------S---GNVTFY--RTEDNSETKITDNQLIIGADGA  155 (379)
Q Consensus        87 ~~~g~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~------~---~~v~v~--~~~~G~~~~~i~adlVV~AdG~  155 (379)
                                        .+. ..|+++++++.+++++..      +   +++.+.  +. +|++.+ +.+|.||.|.|.
T Consensus       335 ------------------~l~-~~gv~i~~~~~v~~v~~~~~~~~~~~~~~~~~v~~~~~-~g~~~~-~~~D~vi~a~G~  393 (598)
T 2x8g_A          335 ------------------YME-NHGVKFAKLCVPDEIKQLKVVDTENNKPGLLLVKGHYT-DGKKFE-EEFETVIFAVGR  393 (598)
T ss_dssp             ------------------HHH-HTTCEEEETEEEEEEEEEECCBTTTTBCCEEEEEEEET-TSCEEE-EEESEEEECSCE
T ss_pred             ------------------HHH-hCCCEEEECCeEEEEEeccccccccCCCceEEEEEEeC-CCcEEe-ccCCEEEEEeCC
Confidence                              011 137778888777776532      1   445443  45 787644 569999999998


Q ss_pred             ChHH
Q psy9141         156 YSGV  159 (379)
Q Consensus       156 ~S~v  159 (379)
                      ...+
T Consensus       394 ~p~~  397 (598)
T 2x8g_A          394 EPQL  397 (598)
T ss_dssp             EECG
T ss_pred             cccc
Confidence            8655

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=97.30  E-value=0.00092  Score=66.83  Aligned_cols=95  Identities=18%  Similarity=0.192  Sum_probs=69.0

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeEEE
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARMIH   86 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~   86 (379)
                      .+|+|||+|++|+-+|..|++.|.+|+++++.+....             .             +.+             
T Consensus       356 k~V~ViGgG~~g~E~A~~L~~~g~~Vtlv~~~~~l~~-------------~-------------~~l-------------  396 (521)
T 1hyu_A          356 KRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMKA-------------D-------------QVL-------------  396 (521)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHBSEEEEECSSSSCCS-------------C-------------HHH-------------
T ss_pred             CeEEEECCCHHHHHHHHHHHhhCCEEEEEEeCcccCc-------------C-------------HHH-------------
Confidence            4799999999999999999999999999998753310             0             000             


Q ss_pred             ecCCcEEEeeCCCCCcHHHHhcCCCCeEEeCceEEEEEecCCeE-EEEEc--cCCceeEEEeecEEEecCCCCh
Q psy9141          87 GQNGKLREIPYDPVHNQVELEQYPDCNIYFQHKLINLDVNSGNV-TFYRT--EDNSETKITDNQLIIGADGAYS  157 (379)
Q Consensus        87 ~~~g~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~v-~v~~~--~~G~~~~~i~adlVV~AdG~~S  157 (379)
                                      +..+.+..|++++.+++++++..+++++ .+.+.  .+|++.+ +.+|.||.|.|...
T Consensus       397 ----------------~~~l~~~~gV~v~~~~~v~~i~~~~~~v~~v~~~~~~~g~~~~-i~~D~vi~a~G~~p  453 (521)
T 1hyu_A          397 ----------------QDKVRSLKNVDIILNAQTTEVKGDGSKVVGLEYRDRVSGDIHS-VALAGIFVQIGLLP  453 (521)
T ss_dssp             ----------------HHHHTTCTTEEEECSEEEEEEEECSSSEEEEEEEETTTCCEEE-EECSEEEECCCEEE
T ss_pred             ----------------HHHHhcCCCcEEEeCCEEEEEEcCCCcEEEEEEEeCCCCceEE-EEcCEEEECcCCCC
Confidence                            0122233589999999999998766554 24443  1466555 89999999999654

>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*

Probab=97.29  E-value=0.00093  Score=66.47  Aligned_cols=97  Identities=16%  Similarity=0.151  Sum_probs=62.9

Q ss_pred             cEEEECCChHHHHHHHHHHhC--------------CCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHH
Q psy9141           8 SVVIVGGGLVGSLSACMFAKN--------------QYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKL   73 (379)
Q Consensus         8 dVvIVGaGpaGl~~A~~La~~--------------G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l   73 (379)
                      .++|||||++|+-+|..|+..              ..+|+++|..+..-..           +.+...+.+         
T Consensus       219 ~vvVvGgG~tGvE~A~~l~~~~~~~l~~~~~~~~~~~~V~lve~~~~il~~-----------~~~~~~~~~---------  278 (502)
T 4g6h_A          219 SIVVVGGGPTGVEAAGELQDYVHQDLRKFLPALAEEVQIHLVEALPIVLNM-----------FEKKLSSYA---------  278 (502)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHHHTHHHHCHHHHHHCEEEEECSSSSSSTT-----------SCHHHHHHH---------
T ss_pred             ceEEECCCcchhhhHHHHHHHHHHHHHhhcccccccceeEEeccccccccC-----------CCHHHHHHH---------
Confidence            599999999999999998754              2578888877644211           112111111         


Q ss_pred             HhCCCCceeeEEEecCCcEEEeeCCCCCcHHHHhcCCCCeEEeCceEEEEEecCCeEEEEEccCCce--eEEEeecEEEe
Q psy9141          74 LAHGIPMRARMIHGQNGKLREIPYDPVHNQVELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSE--TKITDNQLIIG  151 (379)
Q Consensus        74 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~--~~~i~adlVV~  151 (379)
                                                    ....+..||+++++++|++++.+......... ||+.  .+ +.||+||-
T Consensus       279 ------------------------------~~~L~~~GV~v~~~~~v~~v~~~~~~~~~~~~-dg~~~~~~-i~ad~viw  326 (502)
T 4g6h_A          279 ------------------------------QSHLENTSIKVHLRTAVAKVEEKQLLAKTKHE-DGKITEET-IPYGTLIW  326 (502)
T ss_dssp             ------------------------------HHHHHHTTCEEETTEEEEEECSSEEEEEEECT-TSCEEEEE-EECSEEEE
T ss_pred             ------------------------------HHHHHhcceeeecCceEEEEeCCceEEEEEec-Ccccceee-eccCEEEE
Confidence                                          11112258899999999988643323333445 6642  34 99999999


Q ss_pred             cCCCC
Q psy9141         152 ADGAY  156 (379)
Q Consensus       152 AdG~~  156 (379)
                      |.|..
T Consensus       327 a~Gv~  331 (502)
T 4g6h_A          327 ATGNK  331 (502)
T ss_dssp             CCCEE
T ss_pred             ccCCc
Confidence            99964

>2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently linked FAD, C4A-adduct, flavoprotein, oxidoreductase; HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A* 3ljp_A*

Probab=97.27  E-value=0.00016  Score=72.77  Aligned_cols=37  Identities=30%  Similarity=0.434  Sum_probs=33.7

Q ss_pred             CCCcEEEECCChHHHHHHHHHHhC-CCcEEEEccCCCC
Q psy9141           5 SKKSVVIVGGGLVGSLSACMFAKN-QYEVNLYEAREDI   41 (379)
Q Consensus         5 ~~~dVvIVGaGpaGl~~A~~La~~-G~~V~viE~~~~~   41 (379)
                      ..+|++|||+|++|+.+|..|++. |.+|+|+|+....
T Consensus        12 ~~~d~~ivG~G~~G~~~a~~l~~~~~~~v~~~e~g~~~   49 (546)
T 2jbv_A           12 REFDYIVVGGGSAGAAVAARLSEDPAVSVALVEAGPDD   49 (546)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHTTSTTSCEEEECSSCCC
T ss_pred             CcCCEEEECcCHHHHHHHHHHHhCCCCCEEEEecCCcC
Confidence            358999999999999999999998 8999999998644

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=97.20  E-value=0.0017  Score=58.99  Aligned_cols=86  Identities=6%  Similarity=-0.005  Sum_probs=62.9

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeEE
Q psy9141           6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARMI   85 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~~   85 (379)
                      ..+|+|||+|+.|+-+|..|++.| +|+++++.+..              +.....                        
T Consensus       141 ~~~v~vvG~G~~~~e~a~~l~~~g-~v~~v~~~~~~--------------~~~~~~------------------------  181 (297)
T 3fbs_A          141 QGKIGVIAASPMAIHHALMLPDWG-ETTFFTNGIVE--------------PDADQH------------------------  181 (297)
T ss_dssp             TCEEEEECCSTTHHHHHHHGGGTS-EEEEECTTTCC--------------CCHHHH------------------------
T ss_pred             CCEEEEEecCccHHHHHHHhhhcC-cEEEEECCCCC--------------CCHHHH------------------------
Confidence            458999999999999999999999 99999876420              111111                        


Q ss_pred             EecCCcEEEeeCCCCCcHHHHhcCCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEEEecCCCCh
Q psy9141          86 HGQNGKLREIPYDPVHNQVELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAYS  157 (379)
Q Consensus        86 ~~~~g~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlVV~AdG~~S  157 (379)
                                        ..+ +..+++++. ++|++++.++   .+.+. +|++   +.+|.||.|.|...
T Consensus       182 ------------------~~l-~~~gv~i~~-~~v~~i~~~~---~v~~~-~g~~---~~~D~vi~a~G~~p  226 (297)
T 3fbs_A          182 ------------------ALL-AARGVRVET-TRIREIAGHA---DVVLA-DGRS---IALAGLFTQPKLRI  226 (297)
T ss_dssp             ------------------HHH-HHTTCEEEC-SCEEEEETTE---EEEET-TSCE---EEESEEEECCEEEC
T ss_pred             ------------------HHH-HHCCcEEEc-ceeeeeecCC---eEEeC-CCCE---EEEEEEEEccCccc
Confidence                              111 124778874 7888886543   56677 8887   99999999999764

>3ayj_A Pro-enzyme of L-phenylalanine oxidase; amino acid oxidase, flavoenzyme, L- binding, oxidoreductase; HET: FAD PHE; 1.10A {Pseudomonas} PDB: 2yr4_A* 2yr6_A* 3ayi_A* 2yr5_A* 3ayl_A*

Probab=97.17  E-value=0.00015  Score=74.84  Aligned_cols=36  Identities=28%  Similarity=0.471  Sum_probs=32.9

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCC--------CcEEEEccCC-CC
Q psy9141           6 KKSVVIVGGGLVGSLSACMFAKNQ--------YEVNLYEARE-DI   41 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La~~G--------~~V~viE~~~-~~   41 (379)
                      ..+|+|||||++||++|+.|++.|        ++|+|+|+++ ..
T Consensus        56 ~~~v~IiGaGiaGL~aA~~L~~~g~~~~~~~~~~V~v~E~~~~r~  100 (721)
T 3ayj_A           56 NYRIAIVGGGAGGIAALYELGRLAATLPAGSGIDVQIYEADPDSF  100 (721)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHHTTSCTTCEEEEEEECCCTTBG
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCcccccCCCceEEEEeccCccc
Confidence            368999999999999999999998        9999999987 44

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*

Probab=97.12  E-value=0.0013  Score=66.23  Aligned_cols=35  Identities=20%  Similarity=0.325  Sum_probs=32.6

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCC
Q psy9141           6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEARED   40 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~   40 (379)
                      ..+|+|||+|.+|+-+|..|++.+.+|++++|.+.
T Consensus       191 ~krV~VIG~G~sgve~a~~l~~~~~~Vtv~~r~~~  225 (549)
T 4ap3_A          191 GKRVGVIGTGSSGIQSIPIIAEQAEQLFVFQRSAN  225 (549)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHBSEEEEEESSCC
T ss_pred             CCEEEEECCCchHHHHHHHHHhhCCEEEEEECCCC
Confidence            45899999999999999999999999999999985

>1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB prenylation, post-translational modification, protein binding/protein transport complex; HET: GER GDP PG4; 2.20A {Rattus norvegicus} SCOP: c.3.1.3 d.16.1.6 PDB: 1vg9_A* 1ltx_R*

Probab=97.09  E-value=0.00052  Score=69.97  Aligned_cols=37  Identities=22%  Similarity=0.294  Sum_probs=34.7

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCC
Q psy9141           6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIR   42 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~   42 (379)
                      +|||+|||+|+.|+.+|..|++.|.+|++|||++..+
T Consensus         8 ~~D~~i~GtGl~~~~~a~~~~~~g~~vl~id~~~~~g   44 (650)
T 1vg0_A            8 DFDVIVIGTGLPESIIAAACSRSGQRVLHVDSRSYYG   44 (650)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSC
T ss_pred             cCCEEEECCcHHHHHHHHHHHhCCCEEEEEcCCCccc
Confidence            6999999999999999999999999999999998543

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*

Probab=97.04  E-value=0.0018  Score=63.61  Aligned_cols=35  Identities=17%  Similarity=0.094  Sum_probs=31.9

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCC
Q psy9141           6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEARED   40 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~   40 (379)
                      ..+|+|||+|++|+-+|..|++.|.+|+++++.+.
T Consensus       197 ~k~VvVVG~G~sg~eiA~~l~~~g~~V~li~~~~~  231 (464)
T 2xve_A          197 DKTVLLVGSSYSAEDIGSQCYKYGAKKLISCYRTA  231 (464)
T ss_dssp             TSEEEEECCSTTHHHHHHHHHHTTCSEEEEECSSC
T ss_pred             CCEEEEEcCCCCHHHHHHHHHHhCCeEEEEEECCC
Confidence            35799999999999999999999999999998753

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=96.92  E-value=0.00083  Score=54.49  Aligned_cols=33  Identities=9%  Similarity=0.081  Sum_probs=31.0

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEccCC
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEARE   39 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~   39 (379)
                      ..|+|+|+|..|..+|..|.+.|++|+++|+++
T Consensus         7 ~~v~I~G~G~iG~~la~~L~~~g~~V~~id~~~   39 (141)
T 3llv_A            7 YEYIVIGSEAAGVGLVRELTAAGKKVLAVDKSK   39 (141)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence            479999999999999999999999999999875

>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*

Probab=96.92  E-value=0.012  Score=53.95  Aligned_cols=36  Identities=25%  Similarity=0.361  Sum_probs=32.3

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCC
Q psy9141           6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDI   41 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~   41 (379)
                      ..+|+|||||..|+-+|..|++.|.+|+|+|+.+..
T Consensus       152 ~~~vvViGgG~ig~e~A~~l~~~G~~Vt~v~~~~~~  187 (314)
T 4a5l_A          152 NKVLMVVGGGDAAMEEALHLTKYGSKVIILHRRDAF  187 (314)
T ss_dssp             TSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSC
T ss_pred             CCeEEEECCChHHHHHHHHHHHhCCeeeeecccccc
Confidence            357999999999999999999999999999987543

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=96.88  E-value=0.0011  Score=54.85  Aligned_cols=37  Identities=30%  Similarity=0.349  Sum_probs=33.0

Q ss_pred             CCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCC
Q psy9141           5 SKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDI   41 (379)
Q Consensus         5 ~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~   41 (379)
                      ....|+|+|+|..|..+|..|.+.|++|+++|+++..
T Consensus        18 ~~~~v~IiG~G~iG~~la~~L~~~g~~V~vid~~~~~   54 (155)
T 2g1u_A           18 KSKYIVIFGCGRLGSLIANLASSSGHSVVVVDKNEYA   54 (155)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGGG
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHH
Confidence            3468999999999999999999999999999987643

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}

Probab=96.82  E-value=0.0056  Score=63.28  Aligned_cols=100  Identities=15%  Similarity=0.154  Sum_probs=67.6

Q ss_pred             CcEEEEC--CChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeE
Q psy9141           7 KSVVIVG--GGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARM   84 (379)
Q Consensus         7 ~dVvIVG--aGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~   84 (379)
                      .+|+|||  +|++|+-+|..|++.|.+|+++++.+.....      .    ..+.         ...             
T Consensus       524 ~~VvViG~ggG~~g~e~A~~L~~~g~~Vtlv~~~~~l~~~------~----~~~~---------~~~-------------  571 (690)
T 3k30_A          524 KKVVVYDDDHYYLGGVVAELLAQKGYEVSIVTPGAQVSSW------T----NNTF---------EVN-------------  571 (690)
T ss_dssp             SEEEEEECSCSSHHHHHHHHHHHTTCEEEEEESSSSTTGG------G----GGGT---------CHH-------------
T ss_pred             CEEEEEcCCCCccHHHHHHHHHhCCCeeEEEecccccccc------c----ccch---------hHH-------------
Confidence            3699999  9999999999999999999999987643210      0    0000         000             


Q ss_pred             EEecCCcEEEeeCCCCCcHHHHhcCCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEEEecCCCChH
Q psy9141          85 IHGQNGKLREIPYDPVHNQVELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAYSG  158 (379)
Q Consensus        85 ~~~~~g~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlVV~AdG~~S~  158 (379)
                                       .-....+..|++++.+++|++++.  +++.+....+|+..+ +.+|.||.|.|..+.
T Consensus       572 -----------------~l~~~l~~~GV~i~~~~~V~~i~~--~~~~v~~~~~~~~~~-i~aD~VV~A~G~~p~  625 (690)
T 3k30_A          572 -----------------RIQRRLIENGVARVTDHAVVAVGA--GGVTVRDTYASIERE-LECDAVVMVTARLPR  625 (690)
T ss_dssp             -----------------HHHHHHHHTTCEEEESEEEEEEET--TEEEEEETTTCCEEE-EECSEEEEESCEEEC
T ss_pred             -----------------HHHHHHHHCCCEEEcCcEEEEEEC--CeEEEEEccCCeEEE-EECCEEEECCCCCCC
Confidence                             001122235899999999999974  345554321333334 999999999998754

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1

Probab=96.78  E-value=0.0056  Score=63.02  Aligned_cols=46  Identities=4%  Similarity=0.005  Sum_probs=36.4

Q ss_pred             cCCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEEEecCCCChH
Q psy9141         108 QYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAYSG  158 (379)
Q Consensus       108 ~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlVV~AdG~~S~  158 (379)
                      +..|++++.+++|++++  +++++++ . +|+..+ +.+|.||.|.|....
T Consensus       584 ~~~GV~v~~~~~v~~i~--~~~v~~~-~-~G~~~~-i~~D~Vi~a~G~~p~  629 (671)
T 1ps9_A          584 LSRGVKMIPGVSYQKID--DDGLHVV-I-NGETQV-LAVDNVVICAGQEPN  629 (671)
T ss_dssp             HHTTCEEECSCEEEEEE--TTEEEEE-E-TTEEEE-ECCSEEEECCCEEEC
T ss_pred             HhcCCEEEeCcEEEEEe--CCeEEEe-c-CCeEEE-EeCCEEEECCCcccc
Confidence            34699999999999987  3466665 5 885445 999999999998764

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=96.67  E-value=0.0023  Score=52.74  Aligned_cols=35  Identities=9%  Similarity=0.170  Sum_probs=32.1

Q ss_pred             CCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCC
Q psy9141           5 SKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEARE   39 (379)
Q Consensus         5 ~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~   39 (379)
                      .+..|+|+|+|..|..+|..|.+.|++|+++|+++
T Consensus         2 ~~~~vlI~G~G~vG~~la~~L~~~g~~V~vid~~~   36 (153)
T 1id1_A            2 RKDHFIVCGHSILAINTILQLNQRGQNVTVISNLP   36 (153)
T ss_dssp             CCSCEEEECCSHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Confidence            45689999999999999999999999999999874

>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*

Probab=96.67  E-value=0.0092  Score=58.55  Aligned_cols=36  Identities=22%  Similarity=0.250  Sum_probs=31.2

Q ss_pred             CCcEEEECCChHHHHHHHHHH--------------------hCCC-cEEEEccCCCC
Q psy9141           6 KKSVVIVGGGLVGSLSACMFA--------------------KNQY-EVNLYEAREDI   41 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La--------------------~~G~-~V~viE~~~~~   41 (379)
                      ..+|+|||+|.+|+-+|..|+                    +.|. +|+|++++...
T Consensus       145 ~~~vvVIGgG~~g~e~A~~L~~~~~~l~~tdi~~~a~~~l~~~g~~~V~lv~r~~~~  201 (460)
T 1cjc_A          145 CDTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQSRVKTVWIVGRRGPL  201 (460)
T ss_dssp             SSEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCCCEEEEECSSCGG
T ss_pred             CCEEEEECCCHHHHHHHHHHhhchhhhccccccHHHHHHHhhCCCcEEEEEEcCChH
Confidence            358999999999999999999                    6788 79999988643

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*

Probab=96.63  E-value=0.0052  Score=59.92  Aligned_cols=34  Identities=15%  Similarity=0.069  Sum_probs=31.0

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCc-EEEEccCC
Q psy9141           6 KKSVVIVGGGLVGSLSACMFAKNQYE-VNLYEARE   39 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La~~G~~-V~viE~~~   39 (379)
                      ..+|+|||+|++|+-+|..|++.|.+ |+++++.+
T Consensus       212 ~k~VvVvG~G~sg~e~A~~l~~~~~~~V~l~~r~~  246 (447)
T 2gv8_A          212 GESVLVVGGASSANDLVRHLTPVAKHPIYQSLLGG  246 (447)
T ss_dssp             TCCEEEECSSHHHHHHHHHHTTTSCSSEEEECTTC
T ss_pred             CCEEEEEccCcCHHHHHHHHHHHhCCcEEEEeCCC
Confidence            35799999999999999999999999 99999864

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=96.62  E-value=0.002  Score=51.93  Aligned_cols=39  Identities=21%  Similarity=0.173  Sum_probs=31.1

Q ss_pred             CCCCCCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCC
Q psy9141           1 MKCNSKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEARE   39 (379)
Q Consensus         1 M~~m~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~   39 (379)
                      |++++...|+|+|+|..|..+|..|.+.|++|+++|+++
T Consensus         1 m~~~~~~~v~I~G~G~iG~~~a~~l~~~g~~v~~~d~~~   39 (144)
T 2hmt_A            1 MGRIKNKQFAVIGLGRFGGSIVKELHRMGHEVLAVDINE   39 (144)
T ss_dssp             -----CCSEEEECCSHHHHHHHHHHHHTTCCCEEEESCH
T ss_pred             CCCCcCCcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            443333479999999999999999999999999999864

>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*

Probab=96.50  E-value=0.0062  Score=65.38  Aligned_cols=93  Identities=12%  Similarity=0.112  Sum_probs=67.3

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeEEE
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARMIH   86 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~   86 (379)
                      ..|+|||+|+.|+-+|..|++.|.+|+|+|+.+..               .+.                           
T Consensus       285 k~vvViGgG~~g~E~A~~L~~~G~~Vtvv~~~~~~---------------~~~---------------------------  322 (965)
T 2gag_A          285 ARIAVATTNDSAYELVRELAATGGVVAVIDARSSI---------------SAA---------------------------  322 (965)
T ss_dssp             SSEEEEESSTTHHHHHHHHGGGTCCSEEEESCSSC---------------CHH---------------------------
T ss_pred             CeEEEEcCCHHHHHHHHHHHHcCCcEEEEECCCcc---------------chh---------------------------
Confidence            47999999999999999999999999999987532               010                           


Q ss_pred             ecCCcEEEeeCCCCCcHHHHhcCCCCeEEeCceEEEEEec-CCeE-EEEEcc------CCceeEEEeecEEEecCCCChH
Q psy9141          87 GQNGKLREIPYDPVHNQVELEQYPDCNIYFQHKLINLDVN-SGNV-TFYRTE------DNSETKITDNQLIIGADGAYSG  158 (379)
Q Consensus        87 ~~~g~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~-~~~v-~v~~~~------~G~~~~~i~adlVV~AdG~~S~  158 (379)
                                   .   ..+. ..|+++++++.+++++.+ ++++ .+++.+      +|+..+ +++|.||.|.|....
T Consensus       323 -------------~---~~l~-~~GV~v~~~~~v~~i~~~~~~~v~~v~~~~~~~~~~~G~~~~-i~~D~Vv~a~G~~P~  384 (965)
T 2gag_A          323 -------------A---AQAV-ADGVQVISGSVVVDTEADENGELSAIVVAELDEARELGGTQR-FEADVLAVAGGFNPV  384 (965)
T ss_dssp             -------------H---HHHH-HTTCCEEETEEEEEEEECTTSCEEEEEEEEECTTCCEEEEEE-EECSEEEEECCEEEC
T ss_pred             -------------H---HHHH-hCCeEEEeCCEeEEEeccCCCCEEEEEEEeccccCCCCceEE-EEcCEEEECCCcCcC
Confidence                         0   1122 258999999999999874 3433 344441      153344 999999999998764


Q ss_pred             H
Q psy9141         159 V  159 (379)
Q Consensus       159 v  159 (379)
                      +
T Consensus       385 ~  385 (965)
T 2gag_A          385 V  385 (965)
T ss_dssp             C
T ss_pred             h
Confidence            3

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=96.47  E-value=0.01  Score=64.13  Aligned_cols=32  Identities=19%  Similarity=0.124  Sum_probs=30.3

Q ss_pred             cEEEECCChHHHHHHHHHHhCCC-cEEEEccCC
Q psy9141           8 SVVIVGGGLVGSLSACMFAKNQY-EVNLYEARE   39 (379)
Q Consensus         8 dVvIVGaGpaGl~~A~~La~~G~-~V~viE~~~   39 (379)
                      +|+|||||.+|+-+|..+++.|. +|+|+++.+
T Consensus       334 ~VvVIGgG~~g~e~A~~~~~~G~~~Vtvv~r~~  366 (1025)
T 1gte_A          334 AVIVLGAGDTAFDCATSALRCGARRVFLVFRKG  366 (1025)
T ss_dssp             EEEEECSSHHHHHHHHHHHHTTCSEEEEECSSC
T ss_pred             cEEEECCChHHHHHHHHHHHcCCCEEEEEEecC
Confidence            89999999999999999999997 899999875

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=96.47  E-value=0.0025  Score=51.12  Aligned_cols=33  Identities=21%  Similarity=0.284  Sum_probs=30.7

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEccCC
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEARE   39 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~   39 (379)
                      .+|+|||+|..|..+|..|++.|++|+++|+++
T Consensus         5 m~i~IiG~G~iG~~~a~~L~~~g~~v~~~d~~~   37 (140)
T 1lss_A            5 MYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDK   37 (140)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            479999999999999999999999999999764

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=96.38  E-value=0.0044  Score=50.24  Aligned_cols=34  Identities=24%  Similarity=0.315  Sum_probs=31.7

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEccCCC
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEARED   40 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~   40 (379)
                      -+|+|+|+|..|..+|..|.+.|++|+++|+++.
T Consensus         8 ~~viIiG~G~~G~~la~~L~~~g~~v~vid~~~~   41 (140)
T 3fwz_A            8 NHALLVGYGRVGSLLGEKLLASDIPLVVIETSRT   41 (140)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCEEEEESCHH
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEEEECCHH
Confidence            4799999999999999999999999999998863

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}

Probab=96.37  E-value=0.0027  Score=59.16  Aligned_cols=33  Identities=24%  Similarity=0.313  Sum_probs=30.0

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCcEEEEccCC
Q psy9141           6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEARE   39 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~   39 (379)
                      ..+|+|||+|++|+-+|..|++.| +|+++.+.+
T Consensus       163 ~~~v~VvG~G~~g~e~a~~l~~~~-~v~~v~~~~  195 (357)
T 4a9w_A          163 GMRVAIIGGGNSGAQILAEVSTVA-ETTWITQHE  195 (357)
T ss_dssp             TSEEEEECCSHHHHHHHHHHTTTS-EEEEECSSC
T ss_pred             CCEEEEECCCcCHHHHHHHHHhhC-CEEEEECCC
Confidence            358999999999999999999999 799999874

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}

Probab=96.35  E-value=0.0048  Score=60.51  Aligned_cols=36  Identities=22%  Similarity=0.220  Sum_probs=31.8

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCC-cEEEEccCCCC
Q psy9141           6 KKSVVIVGGGLVGSLSACMFAKNQY-EVNLYEAREDI   41 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La~~G~-~V~viE~~~~~   41 (379)
                      ..+|+|||||.+|+-+|..+.+.|. +|+++++++..
T Consensus       264 gk~VvVIGgG~~a~d~A~~~~r~Ga~~Vtiv~r~~~~  300 (456)
T 2vdc_G          264 GKHVVVLGGGDTAMDCVRTAIRQGATSVKCLYRRDRK  300 (456)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSCST
T ss_pred             CCEEEEECCChhHHHHHHHHHHcCCCEEEEEEeCCcc
Confidence            3579999999999999999999998 59999988644

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=96.12  E-value=0.0052  Score=56.21  Aligned_cols=33  Identities=27%  Similarity=0.464  Sum_probs=31.0

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEccCC
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEARE   39 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~   39 (379)
                      ..|.|||+|..|...|..|++.|++|+++|+++
T Consensus         5 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~   37 (283)
T 4e12_A            5 TNVTVLGTGVLGSQIAFQTAFHGFAVTAYDINT   37 (283)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence            479999999999999999999999999999875

>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}

Probab=96.09  E-value=0.0046  Score=56.94  Aligned_cols=35  Identities=20%  Similarity=0.416  Sum_probs=32.3

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCC
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDI   41 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~   41 (379)
                      .+|+|||||+.|+-+|..|++.|.+|+|+|+.+..
T Consensus       146 k~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~  180 (312)
T 4gcm_A          146 KRLFVIGGGDSAVEEGTFLTKFADKVTIVHRRDEL  180 (312)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTTCSEEEEECSSSSC
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCEEEEEeccccc
Confidence            47999999999999999999999999999988644

>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*

Probab=96.06  E-value=0.0048  Score=57.43  Aligned_cols=39  Identities=38%  Similarity=0.635  Sum_probs=31.2

Q ss_pred             CCCCCCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCC
Q psy9141           1 MKCNSKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEARE   39 (379)
Q Consensus         1 M~~m~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~   39 (379)
                      |+......|.|||||..|...|..++.+|++|+++|.++
T Consensus         1 Ma~p~~~~VaViGaG~MG~giA~~~a~~G~~V~l~D~~~   39 (319)
T 3ado_A            1 MASPAAGDVLIVGSGLVGRSWAMLFASGGFRVKLYDIEP   39 (319)
T ss_dssp             ------CEEEEECCSHHHHHHHHHHHHTTCCEEEECSCH
T ss_pred             CCCCCCCeEEEECCcHHHHHHHHHHHhCCCeEEEEECCH
Confidence            554445689999999999999999999999999999765

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=95.95  E-value=0.0058  Score=47.26  Aligned_cols=33  Identities=21%  Similarity=0.489  Sum_probs=30.6

Q ss_pred             CcEEEECCChHHHHHHHHHHhCC-CcEEEEccCC
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKNQ-YEVNLYEARE   39 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~G-~~V~viE~~~   39 (379)
                      ..|+|+|+|..|..++..|.+.| ++|+++++++
T Consensus         6 ~~v~I~G~G~iG~~~~~~l~~~g~~~v~~~~r~~   39 (118)
T 3ic5_A            6 WNICVVGAGKIGQMIAALLKTSSNYSVTVADHDL   39 (118)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCSSEEEEEEESCH
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCceEEEEeCCH
Confidence            47999999999999999999999 8999999875

>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*

Probab=95.87  E-value=0.034  Score=54.41  Aligned_cols=36  Identities=22%  Similarity=0.285  Sum_probs=30.5

Q ss_pred             CCcEEEECCChHHHHHHHHHHhC--------------------CC-cEEEEccCCCC
Q psy9141           6 KKSVVIVGGGLVGSLSACMFAKN--------------------QY-EVNLYEAREDI   41 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La~~--------------------G~-~V~viE~~~~~   41 (379)
                      ..+|+|||+|.+|+-+|..|++.                    |. +|+|++++...
T Consensus       147 ~~~vvVIG~G~~g~e~A~~L~~~~~~l~~tdi~~~~~~~l~~~g~~~V~lv~r~~~~  203 (456)
T 1lqt_A          147 GARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRPRGIQEVVIVGRRGPL  203 (456)
T ss_dssp             SSEEEEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCCCEEEEECSSCGG
T ss_pred             CCEEEEECCCHHHHHHHHHHHhhhhhhcCCCccHHHHHHHHHCCCcEEEEEecCChh
Confidence            35799999999999999999974                    64 89999988643

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=95.78  E-value=0.008  Score=50.91  Aligned_cols=34  Identities=24%  Similarity=0.168  Sum_probs=31.3

Q ss_pred             CCcEEEECCChHHHHHHHHHHhC-CCcEEEEccCC
Q psy9141           6 KKSVVIVGGGLVGSLSACMFAKN-QYEVNLYEARE   39 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La~~-G~~V~viE~~~   39 (379)
                      ...|+|+|+|..|..+|..|.+. |++|+++|+++
T Consensus        39 ~~~v~IiG~G~~G~~~a~~L~~~~g~~V~vid~~~   73 (183)
T 3c85_A           39 HAQVLILGMGRIGTGAYDELRARYGKISLGIEIRE   73 (183)
T ss_dssp             TCSEEEECCSHHHHHHHHHHHHHHCSCEEEEESCH
T ss_pred             CCcEEEECCCHHHHHHHHHHHhccCCeEEEEECCH
Confidence            34799999999999999999999 99999999875

>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis}

Probab=95.76  E-value=0.011  Score=54.97  Aligned_cols=36  Identities=25%  Similarity=0.536  Sum_probs=32.7

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHhCCC-cEEEEccCC
Q psy9141           4 NSKKSVVIVGGGLVGSLSACMFAKNQY-EVNLYEARE   39 (379)
Q Consensus         4 m~~~dVvIVGaGpaGl~~A~~La~~G~-~V~viE~~~   39 (379)
                      |+...|.|||+|..|..+|..|++.|+ +|+++|..+
T Consensus         6 ~~~~kv~ViGaG~vG~~ia~~l~~~g~~~v~l~D~~~   42 (315)
T 3tl2_A            6 IKRKKVSVIGAGFTGATTAFLLAQKELADVVLVDIPQ   42 (315)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCGG
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeccc
Confidence            555689999999999999999999999 999999873

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}

Probab=95.43  E-value=0.013  Score=55.42  Aligned_cols=34  Identities=26%  Similarity=0.455  Sum_probs=31.3

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCcEEEEccCC
Q psy9141           6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEARE   39 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~   39 (379)
                      ..+|.|||+|-.|.++|..|++.|++|+++++++
T Consensus        29 ~mkI~VIGaG~mG~alA~~La~~G~~V~l~~r~~   62 (356)
T 3k96_A           29 KHPIAILGAGSWGTALALVLARKGQKVRLWSYES   62 (356)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHTTTCCEEEECSCH
T ss_pred             CCeEEEECccHHHHHHHHHHHHCCCeEEEEeCCH
Confidence            4589999999999999999999999999999764

>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}

Probab=95.40  E-value=0.015  Score=54.36  Aligned_cols=32  Identities=25%  Similarity=0.375  Sum_probs=29.8

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEccC
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEAR   38 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~   38 (379)
                      .+|.|||+|-.|.++|..|++.|++|+++++.
T Consensus         4 mkI~IiGaG~~G~~~a~~L~~~g~~V~~~~r~   35 (335)
T 3ghy_A            4 TRICIVGAGAVGGYLGARLALAGEAINVLARG   35 (335)
T ss_dssp             CCEEEESCCHHHHHHHHHHHHTTCCEEEECCH
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCEEEEEECh
Confidence            47999999999999999999999999999864

>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}

Probab=95.37  E-value=0.015  Score=56.84  Aligned_cols=35  Identities=23%  Similarity=0.306  Sum_probs=32.1

Q ss_pred             CCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCC
Q psy9141           5 SKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEARE   39 (379)
Q Consensus         5 ~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~   39 (379)
                      +...|+|||.|.+|+++|..|+++|++|++.|+++
T Consensus         8 ~~k~v~viG~G~sG~s~A~~l~~~G~~V~~~D~~~   42 (451)
T 3lk7_A            8 ENKKVLVLGLARSGEAAARLLAKLGAIVTVNDGKP   42 (451)
T ss_dssp             TTCEEEEECCTTTHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEeCCc
Confidence            34689999999999999999999999999999875

>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}

Probab=95.32  E-value=0.016  Score=53.91  Aligned_cols=33  Identities=21%  Similarity=0.461  Sum_probs=30.5

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEccCC
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEARE   39 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~   39 (379)
                      .+|+|||+|-.|.++|..|++.|++|++++|++
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~   35 (320)
T 3i83_A            3 LNILVIGTGAIGSFYGALLAKTGHCVSVVSRSD   35 (320)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHTTCEEEEECSTT
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCh
Confidence            379999999999999999999999999998763

>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A*

Probab=95.28  E-value=0.015  Score=54.12  Aligned_cols=39  Identities=26%  Similarity=0.361  Sum_probs=32.1

Q ss_pred             CCCCCCCcEEEECCChHHHHHHHHHHhCCC--cEEEEccCC
Q psy9141           1 MKCNSKKSVVIVGGGLVGSLSACMFAKNQY--EVNLYEARE   39 (379)
Q Consensus         1 M~~m~~~dVvIVGaGpaGl~~A~~La~~G~--~V~viE~~~   39 (379)
                      |.+|+..+|+|||||-+|.++|..|+..|+  ++.++|.++
T Consensus         1 m~~m~~~KI~IIGaG~vG~~la~~l~~~~~~~ei~L~Di~~   41 (317)
T 3d0o_A            1 MNKFKGNKVVLIGNGAVGSSYAFSLVNQSIVDELVIIDLDT   41 (317)
T ss_dssp             ---CCCCEEEEECCSHHHHHHHHHHHHHCSCSEEEEECSCH
T ss_pred             CCCCCCCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCh
Confidence            555667899999999999999999999885  899999763

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=95.26  E-value=0.014  Score=50.95  Aligned_cols=32  Identities=22%  Similarity=0.348  Sum_probs=30.4

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEccCC
Q psy9141           8 SVVIVGGGLVGSLSACMFAKNQYEVNLYEARE   39 (379)
Q Consensus         8 dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~   39 (379)
                      .|+|+|+|..|..+|..|.+.|++|+++|+++
T Consensus         2 ~iiIiG~G~~G~~la~~L~~~g~~v~vid~~~   33 (218)
T 3l4b_C            2 KVIIIGGETTAYYLARSMLSRKYGVVIINKDR   33 (218)
T ss_dssp             CEEEECCHHHHHHHHHHHHHTTCCEEEEESCH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            49999999999999999999999999999875

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=95.24  E-value=0.018  Score=52.98  Aligned_cols=33  Identities=36%  Similarity=0.486  Sum_probs=30.8

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEccCC
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEARE   39 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~   39 (379)
                      ..|.|||+|..|...|..|++.|++|+++|+++
T Consensus        16 ~~I~VIG~G~mG~~iA~~la~~G~~V~~~d~~~   48 (302)
T 1f0y_A           16 KHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTE   48 (302)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            369999999999999999999999999999875

>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*

Probab=95.10  E-value=0.023  Score=53.18  Aligned_cols=33  Identities=27%  Similarity=0.588  Sum_probs=31.0

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCC-cEEEEccCC
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKNQY-EVNLYEARE   39 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~G~-~V~viE~~~   39 (379)
                      ..|+|||||-.|..+|..|++.|+ +|+++|.++
T Consensus        10 ~kI~VIGaG~vG~~lA~~la~~g~~~V~L~D~~~   43 (331)
T 1pzg_A           10 KKVAMIGSGMIGGTMGYLCALRELADVVLYDVVK   43 (331)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCh
Confidence            589999999999999999999998 999999875

>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli}

Probab=95.07  E-value=0.019  Score=56.60  Aligned_cols=39  Identities=26%  Similarity=0.396  Sum_probs=32.5

Q ss_pred             CCCCCCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCC
Q psy9141           1 MKCNSKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEARED   40 (379)
Q Consensus         1 M~~m~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~   40 (379)
                      |+ |+...|.|||+|..|...|..|++.|++|+++|+++.
T Consensus         1 Ms-m~~~kVgVIGaG~MG~~IA~~la~aG~~V~l~D~~~e   39 (483)
T 3mog_A            1 MS-LNVQTVAVIGSGTMGAGIAEVAASHGHQVLLYDISAE   39 (483)
T ss_dssp             ----CCCCEEEECCSHHHHHHHHHHHHTTCCEEEECSCHH
T ss_pred             CC-CCCCEEEEECcCHHHHHHHHHHHHCCCeEEEEECCHH
Confidence            44 3345799999999999999999999999999998763

>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum}

Probab=95.01  E-value=0.026  Score=52.72  Aligned_cols=33  Identities=27%  Similarity=0.591  Sum_probs=31.0

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCC-cEEEEccCC
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKNQY-EVNLYEARE   39 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~G~-~V~viE~~~   39 (379)
                      ..|+|||||..|..+|..|++.|+ +|+++|.++
T Consensus        15 ~kI~ViGaG~vG~~iA~~la~~g~~~V~L~Di~~   48 (328)
T 2hjr_A           15 KKISIIGAGQIGSTIALLLGQKDLGDVYMFDIIE   48 (328)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEEECSST
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCH
Confidence            589999999999999999999999 999999875

>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}

Probab=94.99  E-value=0.02  Score=53.02  Aligned_cols=31  Identities=23%  Similarity=0.468  Sum_probs=29.6

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEccC
Q psy9141           8 SVVIVGGGLVGSLSACMFAKNQYEVNLYEAR   38 (379)
Q Consensus         8 dVvIVGaGpaGl~~A~~La~~G~~V~viE~~   38 (379)
                      +|+|||+|-.|.++|..|++.|++|++++|+
T Consensus         4 kI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~   34 (312)
T 3hn2_A            4 RIAIVGAGALGLYYGALLQRSGEDVHFLLRR   34 (312)
T ss_dssp             CEEEECCSTTHHHHHHHHHHTSCCEEEECST
T ss_pred             EEEEECcCHHHHHHHHHHHHCCCeEEEEEcC
Confidence            6999999999999999999999999999875

>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*

Probab=94.90  E-value=0.057  Score=51.63  Aligned_cols=40  Identities=5%  Similarity=0.022  Sum_probs=32.6

Q ss_pred             CCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEEEecCCCCh
Q psy9141         110 PDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAYS  157 (379)
Q Consensus       110 ~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlVV~AdG~~S  157 (379)
                      .|++++++++|++++.+  +  +.++ +|++   +++|+||.|.|...
T Consensus       231 ~gV~~~~~~~v~~i~~~--~--v~~~-~g~~---~~~D~vi~a~G~~~  270 (409)
T 3h8l_A          231 LGIKLVHNFKIKEIREH--E--IVDE-KGNT---IPADITILLPPYTG  270 (409)
T ss_dssp             HTCEEECSCCEEEECSS--E--EEET-TSCE---EECSEEEEECCEEC
T ss_pred             CCCEEEcCCceEEECCC--e--EEEC-CCCE---EeeeEEEECCCCCc
Confidence            48899999999988643  3  5667 8887   99999999999765

>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A

Probab=94.88  E-value=0.027  Score=52.32  Aligned_cols=33  Identities=24%  Similarity=0.591  Sum_probs=30.8

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCC-cEEEEccCC
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKNQY-EVNLYEARE   39 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~G~-~V~viE~~~   39 (379)
                      ..|.|||+|-.|..+|..|++.|+ +|+++|+++
T Consensus         5 ~kI~VIGaG~~G~~ia~~la~~g~~~V~l~D~~~   38 (317)
T 2ewd_A            5 RKIAVIGSGQIGGNIAYIVGKDNLADVVLFDIAE   38 (317)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCceEEEEeCCc
Confidence            479999999999999999999998 999999875

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=94.86  E-value=0.022  Score=53.45  Aligned_cols=34  Identities=21%  Similarity=0.216  Sum_probs=30.9

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCcEEEEccCC
Q psy9141           6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEARE   39 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~   39 (379)
                      ..+|.|||+|-.|...|..|++.|++|+++++++
T Consensus         4 ~mki~iiG~G~~G~~~a~~L~~~g~~V~~~~r~~   37 (359)
T 1bg6_A            4 SKTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDA   37 (359)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             cCeEEEECCCHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            3589999999999999999999999999998763

>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*

Probab=94.84  E-value=0.033  Score=51.85  Aligned_cols=33  Identities=24%  Similarity=0.629  Sum_probs=30.6

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCC-cEEEEccCC
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKNQY-EVNLYEARE   39 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~G~-~V~viE~~~   39 (379)
                      ..|+|||||-.|..+|..|+..|+ +|+++|.++
T Consensus         5 ~kI~VIGaG~vG~~ia~~la~~g~~~v~L~Di~~   38 (322)
T 1t2d_A            5 AKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVK   38 (322)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCH
Confidence            479999999999999999999998 999999875

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=94.79  E-value=0.025  Score=52.13  Aligned_cols=34  Identities=21%  Similarity=0.044  Sum_probs=31.2

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCcEEEEccCC
Q psy9141           6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEARE   39 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~   39 (379)
                      ..+|.|||+|..|..+|..|++.|++|+++++++
T Consensus         7 ~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~   40 (303)
T 3g0o_A            7 DFHVGIVGLGSMGMGAARSCLRAGLSTWGADLNP   40 (303)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence            3579999999999999999999999999998764

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*

Probab=94.79  E-value=0.023  Score=56.01  Aligned_cols=34  Identities=21%  Similarity=0.353  Sum_probs=31.6

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCcEEEEccCC
Q psy9141           6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEARE   39 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~   39 (379)
                      ...|.|||+|..|+.+|..|++.|++|+++|+++
T Consensus         8 ~~~I~VIG~G~vG~~lA~~la~~G~~V~~~d~~~   41 (478)
T 2y0c_A            8 SMNLTIIGSGSVGLVTGACLADIGHDVFCLDVDQ   41 (478)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CceEEEECcCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            3579999999999999999999999999999875

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=94.71  E-value=0.033  Score=48.99  Aligned_cols=35  Identities=20%  Similarity=0.345  Sum_probs=31.5

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHhCCCcEEEEccC
Q psy9141           4 NSKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAR   38 (379)
Q Consensus         4 m~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~   38 (379)
                      .+...|+|||||.+|...|..|.+.|.+|+|++..
T Consensus        29 L~gk~VLVVGgG~va~~ka~~Ll~~GA~VtVvap~   63 (223)
T 3dfz_A           29 LKGRSVLVVGGGTIATRRIKGFLQEGAAITVVAPT   63 (223)
T ss_dssp             CTTCCEEEECCSHHHHHHHHHHGGGCCCEEEECSS
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCC
Confidence            34568999999999999999999999999999854

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=94.69  E-value=0.025  Score=55.25  Aligned_cols=33  Identities=30%  Similarity=0.447  Sum_probs=31.1

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEccCCC
Q psy9141           8 SVVIVGGGLVGSLSACMFAKNQYEVNLYEARED   40 (379)
Q Consensus         8 dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~   40 (379)
                      +|.|||+|..|+.+|..|++.|++|+++|+++.
T Consensus         4 kI~VIG~G~vG~~lA~~La~~G~~V~~~D~~~~   36 (450)
T 3gg2_A            4 DIAVVGIGYVGLVSATCFAELGANVRCIDTDRN   36 (450)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             EEEEECcCHHHHHHHHHHHhcCCEEEEEECCHH
Confidence            799999999999999999999999999998763

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=94.69  E-value=0.026  Score=51.85  Aligned_cols=32  Identities=25%  Similarity=0.425  Sum_probs=29.9

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEccCC
Q psy9141           8 SVVIVGGGLVGSLSACMFAKNQYEVNLYEARE   39 (379)
Q Consensus         8 dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~   39 (379)
                      .|.|||+|..|..+|..|++.|++|+++++++
T Consensus         5 ~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~   36 (316)
T 2ew2_A            5 KIAIAGAGAMGSRLGIMLHQGGNDVTLIDQWP   36 (316)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             eEEEECcCHHHHHHHHHHHhCCCcEEEEECCH
Confidence            69999999999999999999999999998753

>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*

Probab=94.66  E-value=0.034  Score=50.38  Aligned_cols=32  Identities=22%  Similarity=0.311  Sum_probs=30.3

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEccCC
Q psy9141           8 SVVIVGGGLVGSLSACMFAKNQYEVNLYEARE   39 (379)
Q Consensus         8 dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~   39 (379)
                      +|.|||+|..|..+|..|++.|++|+++++++
T Consensus         2 ~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~   33 (291)
T 1ks9_A            2 KITVLGCGALGQLWLTALCKQGHEVQGWLRVP   33 (291)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             eEEEECcCHHHHHHHHHHHhCCCCEEEEEcCc
Confidence            59999999999999999999999999999875

>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*

Probab=94.65  E-value=0.028  Score=54.74  Aligned_cols=36  Identities=28%  Similarity=0.350  Sum_probs=32.6

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCC
Q psy9141           6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDI   41 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~   41 (379)
                      ...|+|||.|++|+++|..|+++|++|+++|.+...
T Consensus         5 ~~~v~viG~G~~G~~~a~~l~~~G~~v~~~D~~~~~   40 (439)
T 2x5o_A            5 GKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTP   40 (439)
T ss_dssp             TCCEEEECCHHHHHHHHHHHHTTTCCCEEEESSSSC
T ss_pred             CCEEEEEeecHHHHHHHHHHHhCCCEEEEEECCCCc
Confidence            357999999999999999999999999999987654

>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*

Probab=94.60  E-value=0.13  Score=49.73  Aligned_cols=44  Identities=9%  Similarity=0.043  Sum_probs=30.7

Q ss_pred             CCCeEEeCceEEEEEecCCeEEEEEc-cCCc---eeEEEeecEEEecCCCC
Q psy9141         110 PDCNIYFQHKLINLDVNSGNVTFYRT-EDNS---ETKITDNQLIIGADGAY  156 (379)
Q Consensus       110 ~gv~i~~~~~v~~i~~~~~~v~v~~~-~~G~---~~~~i~adlVV~AdG~~  156 (379)
                      .|++++++++|++++.  +++++... .+|+   ..+ +.+|+||.|.|..
T Consensus       221 ~gI~~~~~~~v~~v~~--~~v~~~~~~~~g~~~~~~~-i~~D~vv~~~g~~  268 (437)
T 3sx6_A          221 EGIEAYTNCKVTKVED--NKMYVTQVDEKGETIKEMV-LPVKFGMMIPAFK  268 (437)
T ss_dssp             TTCEEECSEEEEEEET--TEEEEEEECTTSCEEEEEE-EECSEEEEECCEE
T ss_pred             CCCEEEcCCEEEEEEC--CeEEEEecccCCccccceE-EEEeEEEEcCCCc
Confidence            5899999999998864  45555431 1432   234 8999999998843

>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*

Probab=94.56  E-value=0.034  Score=51.62  Aligned_cols=39  Identities=33%  Similarity=0.518  Sum_probs=33.2

Q ss_pred             CCCCCCCcEEEECCChHHHHHHHHHHhCCC--cEEEEccCC
Q psy9141           1 MKCNSKKSVVIVGGGLVGSLSACMFAKNQY--EVNLYEARE   39 (379)
Q Consensus         1 M~~m~~~dVvIVGaGpaGl~~A~~La~~G~--~V~viE~~~   39 (379)
                      |++++...|+|||+|..|.++|+.|+..|.  +|+++|.+.
T Consensus         1 m~~~~~~kI~IIGaG~vG~sla~~l~~~~~~~ev~l~Di~~   41 (316)
T 1ldn_A            1 MKNNGGARVVVIGAGFVGASYVFALMNQGIADEIVLIDANE   41 (316)
T ss_dssp             CTTTTSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             CCCCCCCEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCCc
Confidence            665445689999999999999999998886  899999864

>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}

Probab=94.56  E-value=0.04  Score=47.82  Aligned_cols=34  Identities=24%  Similarity=0.401  Sum_probs=31.7

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEccCCC
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEARED   40 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~   40 (379)
                      ..|.|||+|-.|.++|..|++.|++|+++++++.
T Consensus        20 ~~I~iiG~G~mG~~la~~l~~~g~~V~~~~~~~~   53 (209)
T 2raf_A           20 MEITIFGKGNMGQAIGHNFEIAGHEVTYYGSKDQ   53 (209)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECTTCC
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence            4799999999999999999999999999998865

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}

Probab=94.50  E-value=0.073  Score=50.91  Aligned_cols=36  Identities=28%  Similarity=0.416  Sum_probs=33.0

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCC
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIR   42 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~   42 (379)
                      .+|+|||+|+.|+-+|..|++.|.+|+++|+.+...
T Consensus       143 ~~vvViGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~  178 (404)
T 3fg2_P          143 KHVVVIGAGFIGLEFAATARAKGLEVDVVELAPRVM  178 (404)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTT
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCEEEEEeCCCcch
Confidence            479999999999999999999999999999987553

>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A*

Probab=94.48  E-value=0.044  Score=51.06  Aligned_cols=36  Identities=19%  Similarity=0.511  Sum_probs=32.0

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHhCCC-cEEEEccCC
Q psy9141           4 NSKKSVVIVGGGLVGSLSACMFAKNQY-EVNLYEARE   39 (379)
Q Consensus         4 m~~~dVvIVGaGpaGl~~A~~La~~G~-~V~viE~~~   39 (379)
                      |+...|.|||+|..|.++|..|+..|+ +|+++|..+
T Consensus         5 m~~~kI~viGaG~vG~~~a~~l~~~~~~~v~L~Di~~   41 (324)
T 3gvi_A            5 MARNKIALIGSGMIGGTLAHLAGLKELGDVVLFDIAE   41 (324)
T ss_dssp             -CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSS
T ss_pred             CcCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCc
Confidence            445689999999999999999999999 999999875

>3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=94.46  E-value=0.027  Score=51.62  Aligned_cols=32  Identities=28%  Similarity=0.360  Sum_probs=30.3

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEccCC
Q psy9141           8 SVVIVGGGLVGSLSACMFAKNQYEVNLYEARE   39 (379)
Q Consensus         8 dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~   39 (379)
                      +|+|||+|-.|.++|..|++.|.+|++++|+.
T Consensus         4 kI~iiGaGa~G~~~a~~L~~~g~~V~~~~r~~   35 (294)
T 3g17_A            4 SVAIIGPGAVGTTIAYELQQSLPHTTLIGRHA   35 (294)
T ss_dssp             CEEEECCSHHHHHHHHHHHHHCTTCEEEESSC
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCeEEEEEecc
Confidence            69999999999999999999999999999874

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=94.45  E-value=0.038  Score=51.24  Aligned_cols=34  Identities=24%  Similarity=0.437  Sum_probs=30.9

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCC--cEEEEccCC
Q psy9141           6 KKSVVIVGGGLVGSLSACMFAKNQY--EVNLYEARE   39 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La~~G~--~V~viE~~~   39 (379)
                      ...|.|||+|..|.++|..|++.|+  +|+++|+++
T Consensus        33 ~~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~   68 (314)
T 3ggo_A           33 MQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINP   68 (314)
T ss_dssp             CSEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCH
T ss_pred             CCEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCH
Confidence            3589999999999999999999999  999998764

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=94.45  E-value=0.04  Score=53.75  Aligned_cols=36  Identities=22%  Similarity=0.327  Sum_probs=33.3

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCC
Q psy9141           6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDI   41 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~   41 (379)
                      ...|.|||.|..|+.+|..|++.|++|+++|+++..
T Consensus         8 ~~~~~vIGlG~vG~~~A~~La~~G~~V~~~D~~~~k   43 (446)
T 4a7p_A            8 SVRIAMIGTGYVGLVSGACFSDFGHEVVCVDKDARK   43 (446)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTT
T ss_pred             ceEEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence            468999999999999999999999999999998754

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=94.44  E-value=0.044  Score=52.55  Aligned_cols=34  Identities=15%  Similarity=0.255  Sum_probs=31.8

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCcEEEEccCC
Q psy9141           6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEARE   39 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~   39 (379)
                      ...|+|||+|++|+.+|..|...|.+|+++|+++
T Consensus       190 ~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~  223 (405)
T 4dio_A          190 AAKIFVMGAGVAGLQAIATARRLGAVVSATDVRP  223 (405)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSST
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCH
Confidence            4689999999999999999999999999999886

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}

Probab=94.42  E-value=0.075  Score=50.98  Aligned_cols=37  Identities=32%  Similarity=0.513  Sum_probs=33.6

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCC
Q psy9141           6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIR   42 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~   42 (379)
                      ..+|+|||+|+.|+-+|..|++.|.+|+++|+.+...
T Consensus       152 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~l  188 (415)
T 3lxd_A          152 AKNAVVIGGGYIGLEAAAVLTKFGVNVTLLEALPRVL  188 (415)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTT
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCchh
Confidence            3579999999999999999999999999999987553

>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}

Probab=94.39  E-value=0.03  Score=51.82  Aligned_cols=34  Identities=18%  Similarity=0.194  Sum_probs=30.7

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCC-cEEEEccCC
Q psy9141           6 KKSVVIVGGGLVGSLSACMFAKNQY-EVNLYEARE   39 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La~~G~-~V~viE~~~   39 (379)
                      ...|.|||.|..|..+|..|++.|+ +|+++++++
T Consensus        24 ~~~I~iIG~G~mG~~~A~~L~~~G~~~V~~~dr~~   58 (312)
T 3qsg_A           24 AMKLGFIGFGEAASAIASGLRQAGAIDMAAYDAAS   58 (312)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHHSCCEEEEECSSC
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCCCeEEEEcCCC
Confidence            3579999999999999999999999 999999863

>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}

Probab=94.38  E-value=0.038  Score=54.34  Aligned_cols=34  Identities=26%  Similarity=0.458  Sum_probs=32.3

Q ss_pred             CcEEEECCChHHHHHHHHHHhC-CC-cEEEEccCCC
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKN-QY-EVNLYEARED   40 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~-G~-~V~viE~~~~   40 (379)
                      ..|.|||+|..|+.+|..|++. |+ +|+++|+++.
T Consensus        19 mkIaVIGlG~mG~~lA~~la~~~G~~~V~~~D~~~~   54 (478)
T 3g79_A           19 KKIGVLGMGYVGIPAAVLFADAPCFEKVLGFQRNSK   54 (478)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHSTTCCEEEEECCCCT
T ss_pred             CEEEEECcCHHHHHHHHHHHHhCCCCeEEEEECChh
Confidence            4799999999999999999999 99 9999999876

>3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum}

Probab=94.38  E-value=0.027  Score=54.75  Aligned_cols=33  Identities=30%  Similarity=0.350  Sum_probs=31.1

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEccCC
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEARE   39 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~   39 (379)
                      ..|.|||.|.+||.+|..|++.|++|+.+|-++
T Consensus        22 ~~IaViGlGYVGLp~A~~~A~~G~~V~g~Did~   54 (444)
T 3vtf_A           22 ASLSVLGLGYVGVVHAVGFALLGHRVVGYDVNP   54 (444)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCEEEEECSCH
T ss_pred             CEEEEEccCHHHHHHHHHHHhCCCcEEEEECCH
Confidence            479999999999999999999999999999875

>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}

Probab=94.31  E-value=0.034  Score=51.05  Aligned_cols=36  Identities=19%  Similarity=0.243  Sum_probs=32.6

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCC
Q psy9141           6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDI   41 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~   41 (379)
                      ..+|.|||.|..|...|..|++.|++|+++|+++..
T Consensus        15 ~~~I~vIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~   50 (296)
T 3qha_A           15 QLKLGYIGLGNMGAPMATRMTEWPGGVTVYDIRIEA   50 (296)
T ss_dssp             CCCEEEECCSTTHHHHHHHHTTSTTCEEEECSSTTT
T ss_pred             CCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHHH
Confidence            357999999999999999999999999999988643

>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1

Probab=94.26  E-value=0.047  Score=50.74  Aligned_cols=34  Identities=32%  Similarity=0.497  Sum_probs=30.8

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCC--cEEEEccCC
Q psy9141           6 KKSVVIVGGGLVGSLSACMFAKNQY--EVNLYEARE   39 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La~~G~--~V~viE~~~   39 (379)
                      ..+|+|||+|-+|..+|..|+..|+  +++++|.+.
T Consensus         7 ~~KI~IiGaG~vG~~~a~~l~~~~~~~ev~L~Di~~   42 (318)
T 1y6j_A            7 RSKVAIIGAGFVGASAAFTMALRQTANELVLIDVFK   42 (318)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC-
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCh
Confidence            4689999999999999999999998  899999875

>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*

Probab=94.23  E-value=0.046  Score=50.55  Aligned_cols=33  Identities=27%  Similarity=0.395  Sum_probs=30.6

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCC--cEEEEccCC
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKNQY--EVNLYEARE   39 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~G~--~V~viE~~~   39 (379)
                      ..|+|||+|-.|..+|..|++.|+  +|+++|++.
T Consensus         8 mkI~IiGaG~vG~~~a~~l~~~g~~~~V~l~d~~~   42 (319)
T 1lld_A            8 TKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAK   42 (319)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCh
Confidence            479999999999999999999999  999999864

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*

Probab=94.23  E-value=0.043  Score=53.60  Aligned_cols=35  Identities=17%  Similarity=0.232  Sum_probs=32.3

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCC
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDI   41 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~   41 (379)
                      .+|+|||||+.|+-+|..|++.|.+|+++|+.+..
T Consensus       177 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~  211 (467)
T 1zk7_A          177 ERLAVIGSSVVALELAQAFARLGSKVTVLARNTLF  211 (467)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTT
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCEEEEEEECCcc
Confidence            57999999999999999999999999999988644

>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis}

Probab=94.22  E-value=0.057  Score=50.23  Aligned_cols=36  Identities=25%  Similarity=0.458  Sum_probs=32.1

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHhCCC-cEEEEccCC
Q psy9141           4 NSKKSVVIVGGGLVGSLSACMFAKNQY-EVNLYEARE   39 (379)
Q Consensus         4 m~~~dVvIVGaGpaGl~~A~~La~~G~-~V~viE~~~   39 (379)
                      |+...|.|||+|..|.++|..|+..|+ +++++|..+
T Consensus         3 m~~~kI~iiGaG~vG~~~a~~l~~~~~~~v~l~Di~~   39 (321)
T 3p7m_A            3 MARKKITLVGAGNIGGTLAHLALIKQLGDVVLFDIAQ   39 (321)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSS
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCCh
Confidence            444589999999999999999999998 999999875

>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1

Probab=94.21  E-value=0.027  Score=51.12  Aligned_cols=35  Identities=20%  Similarity=0.365  Sum_probs=31.8

Q ss_pred             CCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCC
Q psy9141           5 SKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEARE   39 (379)
Q Consensus         5 ~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~   39 (379)
                      +...|+|||||.+|...|..|.+.|.+|+|++...
T Consensus        12 ~~k~VLVVGgG~va~rka~~Ll~~Ga~VtViap~~   46 (274)
T 1kyq_A           12 KDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPDL   46 (274)
T ss_dssp             TTCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEEE
T ss_pred             CCCEEEEECCcHHHHHHHHHHHhCCCEEEEEcCCC
Confidence            45689999999999999999999999999998654

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}

Probab=94.19  E-value=0.07  Score=52.51  Aligned_cols=37  Identities=27%  Similarity=0.459  Sum_probs=33.3

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCC
Q psy9141           6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIR   42 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~   42 (379)
                      ..+|+|||||+.|+-+|..|++.|.+|+++|+.+...
T Consensus       198 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l  234 (491)
T 3urh_A          198 PASMIVVGGGVIGLELGSVWARLGAKVTVVEFLDTIL  234 (491)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCEEEEEecccccc
Confidence            3579999999999999999999999999999987553

>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}

Probab=94.16  E-value=0.038  Score=55.34  Aligned_cols=35  Identities=14%  Similarity=0.169  Sum_probs=31.7

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCC
Q psy9141           6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEARED   40 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~   40 (379)
                      +.+++|||||+.|+-+|..+++.|.+|+|+++...
T Consensus       223 P~~lvIIGgG~IGlE~A~~~~~lG~~VTii~~~~~  257 (542)
T 4b1b_A          223 PGKTLVVGASYVALECSGFLNSLGYDVTVAVRSIV  257 (542)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHHTCCEEEEESSCS
T ss_pred             CceEEEECCCHHHHHHHHHHHhcCCeEEEeccccc
Confidence            35899999999999999999999999999997653

>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*

Probab=94.14  E-value=0.045  Score=51.08  Aligned_cols=34  Identities=24%  Similarity=0.423  Sum_probs=30.6

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCC--cEEEEccCC
Q psy9141           6 KKSVVIVGGGLVGSLSACMFAKNQY--EVNLYEARE   39 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La~~G~--~V~viE~~~   39 (379)
                      ...|.|||+|.+|.++|..|+..|+  +++++|.+.
T Consensus         5 ~~kI~ViGaG~vG~~~a~~l~~~~~~~~l~l~D~~~   40 (326)
T 3pqe_A            5 VNKVALIGAGFVGSSYAFALINQGITDELVVIDVNK   40 (326)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCceEEEEecch
Confidence            4589999999999999999999987  899999753

>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}

Probab=94.11  E-value=0.061  Score=49.64  Aligned_cols=33  Identities=24%  Similarity=0.298  Sum_probs=30.9

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEccCC
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEARE   39 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~   39 (379)
                      ..|.|||+|..|...|..|++.|++|+++++++
T Consensus        31 ~~I~iIG~G~mG~~~a~~l~~~g~~V~~~~~~~   63 (316)
T 2uyy_A           31 KKIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTA   63 (316)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCEEEECSSG
T ss_pred             CeEEEEcccHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            579999999999999999999999999999875

>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A

Probab=94.10  E-value=0.031  Score=54.85  Aligned_cols=33  Identities=24%  Similarity=0.490  Sum_probs=30.6

Q ss_pred             CcEEEECCChHHHHHHHHHHhC--CCcEEEEccCC
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKN--QYEVNLYEARE   39 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~--G~~V~viE~~~   39 (379)
                      ..|.|||+|..|+.+|..|++.  |++|+++|+++
T Consensus         6 mkI~VIG~G~mG~~lA~~La~~g~G~~V~~~d~~~   40 (467)
T 2q3e_A            6 KKICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVNE   40 (467)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCH
T ss_pred             cEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCH
Confidence            3799999999999999999999  89999999875

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=94.08  E-value=0.049  Score=50.31  Aligned_cols=33  Identities=21%  Similarity=0.377  Sum_probs=31.1

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEccCC
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEARE   39 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~   39 (379)
                      ..|.|||.|..|..+|..|++.|++|+++++++
T Consensus        22 ~~I~iIG~G~mG~~~A~~l~~~G~~V~~~dr~~   54 (310)
T 3doj_A           22 MEVGFLGLGIMGKAMSMNLLKNGFKVTVWNRTL   54 (310)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSG
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCeEEEEeCCH
Confidence            479999999999999999999999999999875

>1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A*

Probab=94.02  E-value=0.025  Score=53.53  Aligned_cols=32  Identities=28%  Similarity=0.468  Sum_probs=29.9

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEccCC
Q psy9141           8 SVVIVGGGLVGSLSACMFAKNQYEVNLYEARE   39 (379)
Q Consensus         8 dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~   39 (379)
                      .|.|||+|-.|.++|..|++.|++|+++++++
T Consensus        17 kI~iIG~G~mG~~la~~L~~~G~~V~~~~r~~   48 (366)
T 1evy_A           17 KAVVFGSGAFGTALAMVLSKKCREVCVWHMNE   48 (366)
T ss_dssp             EEEEECCSHHHHHHHHHHTTTEEEEEEECSCH
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            69999999999999999999999999998763

>2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A*

Probab=93.98  E-value=0.041  Score=54.21  Aligned_cols=36  Identities=22%  Similarity=0.362  Sum_probs=32.4

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCC
Q psy9141           4 NSKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEARE   39 (379)
Q Consensus         4 m~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~   39 (379)
                      |++.+|.|||+|..|..+|..|++.|++|++++|++
T Consensus        13 ~~~~~IgvIGlG~MG~~lA~~La~~G~~V~v~~r~~   48 (480)
T 2zyd_A           13 MSKQQIGVVGMAVMGRNLALNIESRGYTVSIFNRSR   48 (480)
T ss_dssp             --CBSEEEECCSHHHHHHHHHHHTTTCCEEEECSSH
T ss_pred             cCCCeEEEEccHHHHHHHHHHHHhCCCeEEEEeCCH
Confidence            667899999999999999999999999999999875

>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida}

Probab=93.96  E-value=0.065  Score=49.37  Aligned_cols=34  Identities=21%  Similarity=0.383  Sum_probs=31.4

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCcEEEEccCC
Q psy9141           6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEARE   39 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~   39 (379)
                      ..+|.|||.|..|...|..|++.|++|+++++++
T Consensus         9 ~~~IgiIG~G~mG~~~A~~l~~~G~~V~~~dr~~   42 (306)
T 3l6d_A            9 EFDVSVIGLGAMGTIMAQVLLKQGKRVAIWNRSP   42 (306)
T ss_dssp             SCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            4589999999999999999999999999998775

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=93.95  E-value=0.02  Score=56.19  Aligned_cols=34  Identities=21%  Similarity=0.414  Sum_probs=31.7

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEccCCC
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEARED   40 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~   40 (379)
                      .+|+|+|+|-.|..+|..|...|++|+|+|+++.
T Consensus         4 M~iiI~G~G~vG~~la~~L~~~~~~v~vId~d~~   37 (461)
T 4g65_A            4 MKIIILGAGQVGGTLAENLVGENNDITIVDKDGD   37 (461)
T ss_dssp             EEEEEECCSHHHHHHHHHTCSTTEEEEEEESCHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCCEEEEECCHH
Confidence            3699999999999999999999999999999863

>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}

Probab=93.95  E-value=0.04  Score=50.22  Aligned_cols=33  Identities=15%  Similarity=0.385  Sum_probs=30.9

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEccCCC
Q psy9141           8 SVVIVGGGLVGSLSACMFAKNQYEVNLYEARED   40 (379)
Q Consensus         8 dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~   40 (379)
                      .|.|||.|..|..+|..|++.|++|+++++++.
T Consensus         3 ~I~iiG~G~mG~~~a~~l~~~G~~V~~~dr~~~   35 (287)
T 3pdu_A            3 TYGFLGLGIMGGPMAANLVRAGFDVTVWNRNPA   35 (287)
T ss_dssp             CEEEECCSTTHHHHHHHHHHHTCCEEEECSSGG
T ss_pred             eEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHH
Confidence            699999999999999999999999999998763

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=93.92  E-value=0.045  Score=50.83  Aligned_cols=33  Identities=15%  Similarity=0.383  Sum_probs=30.9

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEccCC
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEARE   39 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~   39 (379)
                      ..|.|||.|..|..+|..|++.|++|+++++++
T Consensus        32 ~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~   64 (320)
T 4dll_A           32 RKITFLGTGSMGLPMARRLCEAGYALQVWNRTP   64 (320)
T ss_dssp             SEEEEECCTTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CEEEEECccHHHHHHHHHHHhCCCeEEEEcCCH
Confidence            479999999999999999999999999998775

>2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis}

Probab=93.91  E-value=0.032  Score=51.31  Aligned_cols=31  Identities=26%  Similarity=0.325  Sum_probs=29.0

Q ss_pred             CcEEEECCChHHHHHHHHHHhC-----C-CcEEEEcc
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKN-----Q-YEVNLYEA   37 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~-----G-~~V~viE~   37 (379)
                      .+|.|||+|..|.++|..|++.     | ++|++++|
T Consensus         9 m~I~iiG~G~mG~~~a~~L~~~~~~~~g~~~V~~~~r   45 (317)
T 2qyt_A            9 IKIAVFGLGGVGGYYGAMLALRAAATDGLLEVSWIAR   45 (317)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHTTSSEEEEEECC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCccccCCCCCEEEEEc
Confidence            4799999999999999999999     9 99999986

>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}

Probab=93.82  E-value=0.062  Score=48.87  Aligned_cols=33  Identities=21%  Similarity=0.292  Sum_probs=30.3

Q ss_pred             CcEEEECC-ChHHHHHHHHHHhCCCcEEEEccCC
Q psy9141           7 KSVVIVGG-GLVGSLSACMFAKNQYEVNLYEARE   39 (379)
Q Consensus         7 ~dVvIVGa-GpaGl~~A~~La~~G~~V~viE~~~   39 (379)
                      ..|.|||+ |-.|..+|..|++.|++|+++++++
T Consensus        12 m~I~iIG~tG~mG~~la~~l~~~g~~V~~~~r~~   45 (286)
T 3c24_A           12 KTVAILGAGGKMGARITRKIHDSAHHLAAIEIAP   45 (286)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHSSSEEEEECCSH
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            37999999 9999999999999999999998763

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=93.82  E-value=0.052  Score=52.39  Aligned_cols=34  Identities=18%  Similarity=0.344  Sum_probs=31.8

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEccCCC
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEARED   40 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~   40 (379)
                      .+|+|||+|..|..+|..|.+.|++|++||+++.
T Consensus         5 ~~viIiG~Gr~G~~va~~L~~~g~~vvvId~d~~   38 (413)
T 3l9w_A            5 MRVIIAGFGRFGQITGRLLLSSGVKMVVLDHDPD   38 (413)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEECCHH
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCCCEEEEECCHH
Confidence            4799999999999999999999999999998863

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}

Probab=93.79  E-value=0.053  Score=53.16  Aligned_cols=33  Identities=30%  Similarity=0.281  Sum_probs=30.9

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEccCC
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEARE   39 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~   39 (379)
                      ..|.|||+|..|...|..|+++|++|+++|+++
T Consensus        38 ~kV~VIGaG~MG~~iA~~la~~G~~V~l~D~~~   70 (463)
T 1zcj_A           38 SSVGVLGLGTMGRGIAISFARVGISVVAVESDP   70 (463)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEECSSH
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            469999999999999999999999999999875

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=93.79  E-value=0.05  Score=51.68  Aligned_cols=36  Identities=17%  Similarity=0.290  Sum_probs=32.5

Q ss_pred             CCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCC
Q psy9141           5 SKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEARED   40 (379)
Q Consensus         5 ~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~   40 (379)
                      ....|+|||+|.+|+.+|..|...|.+|+++|+++.
T Consensus       183 ~~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~  218 (381)
T 3p2y_A          183 KPASALVLGVGVAGLQALATAKRLGAKTTGYDVRPE  218 (381)
T ss_dssp             CCCEEEEESCSHHHHHHHHHHHHHTCEEEEECSSGG
T ss_pred             CCCEEEEECchHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            346899999999999999999999999999998863

>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}

Probab=93.78  E-value=0.055  Score=48.11  Aligned_cols=36  Identities=22%  Similarity=0.256  Sum_probs=32.2

Q ss_pred             CCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCC
Q psy9141           5 SKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEARED   40 (379)
Q Consensus         5 ~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~   40 (379)
                      ....|.|||+|-.|.++|..|++.|++|+++++++.
T Consensus        18 ~~~kIgiIG~G~mG~alA~~L~~~G~~V~~~~r~~~   53 (245)
T 3dtt_A           18 QGMKIAVLGTGTVGRTMAGALADLGHEVTIGTRDPK   53 (245)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCChh
Confidence            346899999999999999999999999999998753

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=93.77  E-value=0.048  Score=48.76  Aligned_cols=33  Identities=24%  Similarity=0.336  Sum_probs=30.9

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCC-cEEEEccCC
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKNQY-EVNLYEARE   39 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~G~-~V~viE~~~   39 (379)
                      ..|+|||+|-.|..+|..|++.|. +++|+|++.
T Consensus        32 ~~VlVvG~Gg~G~~va~~La~~Gv~~i~lvD~d~   65 (249)
T 1jw9_B           32 SRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDT   65 (249)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred             CeEEEEeeCHHHHHHHHHHHHcCCCeEEEEcCCC
Confidence            579999999999999999999998 899999886

>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}

Probab=93.75  E-value=0.057  Score=46.84  Aligned_cols=39  Identities=26%  Similarity=0.351  Sum_probs=32.4

Q ss_pred             CCCCCCCcEEEECC-ChHHHHHHHHHHhCCCcEEEEccCCCC
Q psy9141           1 MKCNSKKSVVIVGG-GLVGSLSACMFAKNQYEVNLYEAREDI   41 (379)
Q Consensus         1 M~~m~~~dVvIVGa-GpaGl~~A~~La~~G~~V~viE~~~~~   41 (379)
                      |+.|  ..|+|.|| |..|..++..|.+.|++|+++.|.+..
T Consensus         1 M~~m--~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~   40 (227)
T 3dhn_A            1 MEKV--KKIVLIGASGFVGSALLNEALNRGFEVTAVVRHPEK   40 (227)
T ss_dssp             --CC--CEEEEETCCHHHHHHHHHHHHTTTCEEEEECSCGGG
T ss_pred             CCCC--CEEEEEcCCchHHHHHHHHHHHCCCEEEEEEcCccc
Confidence            5544  37999995 999999999999999999999998643

>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*

Probab=93.74  E-value=0.05  Score=52.70  Aligned_cols=33  Identities=24%  Similarity=0.357  Sum_probs=30.6

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEccCCC
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEARED   40 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~   40 (379)
                      ..|.|||+|..|+.+|..|++ |++|+++|+++.
T Consensus        37 mkIaVIGlG~mG~~lA~~La~-G~~V~~~D~~~~   69 (432)
T 3pid_A           37 MKITISGTGYVGLSNGVLIAQ-NHEVVALDIVQA   69 (432)
T ss_dssp             CEEEEECCSHHHHHHHHHHHT-TSEEEEECSCHH
T ss_pred             CEEEEECcCHHHHHHHHHHHc-CCeEEEEecCHH
Confidence            479999999999999999998 999999998864

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}

Probab=93.70  E-value=0.065  Score=48.74  Aligned_cols=33  Identities=21%  Similarity=0.351  Sum_probs=30.9

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEccCCC
Q psy9141           8 SVVIVGGGLVGSLSACMFAKNQYEVNLYEARED   40 (379)
Q Consensus         8 dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~   40 (379)
                      .|.|||+|..|...|..|++.|++|+++++++.
T Consensus         3 ~i~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~   35 (287)
T 3pef_A            3 KFGFIGLGIMGSAMAKNLVKAGCSVTIWNRSPE   35 (287)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSGG
T ss_pred             EEEEEeecHHHHHHHHHHHHCCCeEEEEcCCHH
Confidence            699999999999999999999999999998753

>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*

Probab=93.68  E-value=0.044  Score=53.25  Aligned_cols=32  Identities=25%  Similarity=0.299  Sum_probs=30.2

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEccCC
Q psy9141           8 SVVIVGGGLVGSLSACMFAKNQYEVNLYEARE   39 (379)
Q Consensus         8 dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~   39 (379)
                      .|.|||+|..|+.+|..|++.|++|+++|+++
T Consensus         2 kI~VIG~G~vG~~~A~~la~~G~~V~~~d~~~   33 (436)
T 1mv8_A            2 RISIFGLGYVGAVCAGCLSARGHEVIGVDVSS   33 (436)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            59999999999999999999999999999875

>3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis}

Probab=93.66  E-value=0.065  Score=49.43  Aligned_cols=32  Identities=31%  Similarity=0.475  Sum_probs=29.3

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEccCC
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEARE   39 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~   39 (379)
                      .+|+|||+|-.|.+.|..|+ .|.+|++++|.+
T Consensus         3 mkI~IiGaGa~G~~~a~~L~-~g~~V~~~~r~~   34 (307)
T 3ego_A            3 LKIGIIGGGSVGLLCAYYLS-LYHDVTVVTRRQ   34 (307)
T ss_dssp             CEEEEECCSHHHHHHHHHHH-TTSEEEEECSCH
T ss_pred             CEEEEECCCHHHHHHHHHHh-cCCceEEEECCH
Confidence            37999999999999999999 999999998763

>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}

Probab=93.61  E-value=0.039  Score=48.28  Aligned_cols=33  Identities=24%  Similarity=0.322  Sum_probs=30.2

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEE-EccCC
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKNQYEVNL-YEARE   39 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~G~~V~v-iE~~~   39 (379)
                      ..|.|||+|-.|.++|..|++.|++|++ +++++
T Consensus        24 mkI~IIG~G~mG~~la~~l~~~g~~V~~v~~r~~   57 (220)
T 4huj_A           24 TTYAIIGAGAIGSALAERFTAAQIPAIIANSRGP   57 (220)
T ss_dssp             CCEEEEECHHHHHHHHHHHHHTTCCEEEECTTCG
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEECCCH
Confidence            4799999999999999999999999999 88765

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=93.60  E-value=0.06  Score=50.93  Aligned_cols=35  Identities=17%  Similarity=0.229  Sum_probs=31.7

Q ss_pred             CCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCC
Q psy9141           5 SKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEARE   39 (379)
Q Consensus         5 ~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~   39 (379)
                      +..+|.|||.|..|..+|..|++.|++|+++++++
T Consensus        21 ~~mkIgiIGlG~mG~~~A~~L~~~G~~V~v~dr~~   55 (358)
T 4e21_A           21 QSMQIGMIGLGRMGADMVRRLRKGGHECVVYDLNV   55 (358)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             cCCEEEEECchHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            44689999999999999999999999999999875

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*

Probab=93.59  E-value=0.13  Score=50.35  Aligned_cols=36  Identities=22%  Similarity=0.407  Sum_probs=32.9

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCC
Q psy9141           6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDI   41 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~   41 (379)
                      ..+|+|||+|+.|+-+|..|++.|.+|+++++.+..
T Consensus       180 ~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~  215 (476)
T 3lad_A          180 PGKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDKF  215 (476)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCc
Confidence            357999999999999999999999999999998754

>2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum}

Probab=93.56  E-value=0.066  Score=47.85  Aligned_cols=34  Identities=21%  Similarity=0.211  Sum_probs=30.8

Q ss_pred             CcEEEECCChHHHHHHHHHHhCC----CcEEEEccCCC
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKNQ----YEVNLYEARED   40 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~G----~~V~viE~~~~   40 (379)
                      ..|.|||+|-.|.+.|..|++.|    ++|+++++++.
T Consensus         5 m~i~iiG~G~mG~~~a~~l~~~g~~~~~~v~~~~~~~~   42 (262)
T 2rcy_A            5 IKLGFMGLGQMGSALAHGIANANIIKKENLFYYGPSKK   42 (262)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHHTSSCGGGEEEECSSCC
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCCCCCeEEEEeCCcc
Confidence            47999999999999999999999    79999998764

>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans}

Probab=93.55  E-value=0.066  Score=52.29  Aligned_cols=34  Identities=35%  Similarity=0.465  Sum_probs=31.8

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEccCCC
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEARED   40 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~   40 (379)
                      ..|.|||+|..|...|..|++.|++|+++|+++.
T Consensus        55 ~kVaVIGaG~MG~~IA~~la~aG~~V~l~D~~~e   88 (460)
T 3k6j_A           55 NSVAIIGGGTMGKAMAICFGLAGIETFLVVRNEQ   88 (460)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEEECcHH
Confidence            4799999999999999999999999999998864

>4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A*

Probab=93.55  E-value=0.1  Score=49.01  Aligned_cols=34  Identities=26%  Similarity=0.376  Sum_probs=31.5

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEccCCCC
Q psy9141           8 SVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDI   41 (379)
Q Consensus         8 dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~   41 (379)
                      .|+|+|||.-|..+|..+.+.|++|+++|.++..
T Consensus         3 ~I~ilGgg~~g~~~~~~Ak~~G~~vv~vd~~~~~   36 (363)
T 4ffl_A            3 TICLVGGKLQGFEAAYLSKKAGMKVVLVDKNPQA   36 (363)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESCTTC
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCC
Confidence            6999999999999999999999999999987754

>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans}

Probab=93.54  E-value=0.071  Score=49.14  Aligned_cols=32  Identities=34%  Similarity=0.445  Sum_probs=29.9

Q ss_pred             cEEEECCChHHHHHHHHHHhCCC--cEEEEccCC
Q psy9141           8 SVVIVGGGLVGSLSACMFAKNQY--EVNLYEARE   39 (379)
Q Consensus         8 dVvIVGaGpaGl~~A~~La~~G~--~V~viE~~~   39 (379)
                      .|+|||+|-.|..+|..|+..|+  +|+++|.++
T Consensus         2 kI~VIGaG~vG~~la~~la~~g~~~eV~L~D~~~   35 (304)
T 2v6b_A            2 KVGVVGTGFVGSTAAFALVLRGSCSELVLVDRDE   35 (304)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCH
Confidence            59999999999999999999999  999999864

>1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima}

Probab=93.46  E-value=0.077  Score=49.47  Aligned_cols=34  Identities=29%  Similarity=0.444  Sum_probs=31.1

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCcEEEEccCC
Q psy9141           6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEARE   39 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~   39 (379)
                      +.+|.|||+|-.|.++|..|++.|++|++++|.+
T Consensus        14 ~~kI~iIG~G~mG~ala~~L~~~G~~V~~~~r~~   47 (335)
T 1z82_A           14 EMRFFVLGAGSWGTVFAQMLHENGEEVILWARRK   47 (335)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred             CCcEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence            3689999999999999999999999999998763

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*

Probab=93.45  E-value=0.1  Score=51.10  Aligned_cols=101  Identities=14%  Similarity=0.153  Sum_probs=65.8

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeEEE
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARMIH   86 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~   86 (379)
                      .+++|||||+.|+-+|..|++.|.+|+++++.....            .+.+...+.+.+     .+.+.+         
T Consensus       188 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~l~------------~~d~~~~~~l~~-----~l~~~G---------  241 (483)
T 3dgh_A          188 GKTLVVGAGYIGLECAGFLKGLGYEPTVMVRSIVLR------------GFDQQMAELVAA-----SMEERG---------  241 (483)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSCSST------------TSCHHHHHHHHH-----HHHHTT---------
T ss_pred             CcEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCCCc------------ccCHHHHHHHHH-----HHHhCC---------
Confidence            479999999999999999999999999999853221            122333332221     122111         


Q ss_pred             ecCCcEEEeeCCCCCcHHHHhcCCCCeEEeCceEEEEEecCC-eEEEEEccCC---ceeEEEeecEEEecCCCChHHH
Q psy9141          87 GQNGKLREIPYDPVHNQVELEQYPDCNIYFQHKLINLDVNSG-NVTFYRTEDN---SETKITDNQLIIGADGAYSGVR  160 (379)
Q Consensus        87 ~~~g~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~-~v~v~~~~~G---~~~~~i~adlVV~AdG~~S~vr  160 (379)
                                  ..             ++++++|++++.+++ .+.+++. ++   +..+ +++|.||.|.|+...+.
T Consensus       242 ------------v~-------------i~~~~~v~~i~~~~~~~~~v~~~-~~~~~~~~~-~~~D~vi~a~G~~p~~~  292 (483)
T 3dgh_A          242 ------------IP-------------FLRKTVPLSVEKQDDGKLLVKYK-NVETGEESE-DVYDTVLWAIGRKGLVD  292 (483)
T ss_dssp             ------------CC-------------EEETEEEEEEEECTTSCEEEEEE-ETTTCCEEE-EEESEEEECSCEEECCG
T ss_pred             ------------CE-------------EEeCCEEEEEEEcCCCcEEEEEe-cCCCCceeE-EEcCEEEECcccccCcC
Confidence                        11             455667777776543 4556655 43   3334 89999999999876543

>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus}

Probab=93.41  E-value=0.066  Score=49.13  Aligned_cols=33  Identities=33%  Similarity=0.466  Sum_probs=30.6

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCcEEEEccCC
Q psy9141           6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEARE   39 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~   39 (379)
                      +..|.|||+|.-|...|..|+ +|++|+++|+++
T Consensus        12 ~~~V~vIG~G~MG~~iA~~la-aG~~V~v~d~~~   44 (293)
T 1zej_A           12 HMKVFVIGAGLMGRGIAIAIA-SKHEVVLQDVSE   44 (293)
T ss_dssp             CCEEEEECCSHHHHHHHHHHH-TTSEEEEECSCH
T ss_pred             CCeEEEEeeCHHHHHHHHHHH-cCCEEEEEECCH
Confidence            468999999999999999999 999999999775

>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032}

Probab=93.38  E-value=0.079  Score=49.73  Aligned_cols=33  Identities=24%  Similarity=0.284  Sum_probs=30.6

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEccCC
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEARE   39 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~   39 (379)
                      ..|.|||.|..|.++|..|++.|++|+++|+++
T Consensus         9 ~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~   41 (341)
T 3ktd_A            9 RPVCILGLGLIGGSLLRDLHAANHSVFGYNRSR   41 (341)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCEEEECSCH
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            479999999999999999999999999999764

>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}

Probab=93.37  E-value=0.063  Score=49.75  Aligned_cols=31  Identities=42%  Similarity=0.533  Sum_probs=28.9

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEccC
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEAR   38 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~   38 (379)
                      .+|+|||+|-.|.++|..|++.|++|+++ ++
T Consensus        20 ~kI~IiGaGa~G~~~a~~L~~~G~~V~l~-~~   50 (318)
T 3hwr_A           20 MKVAIMGAGAVGCYYGGMLARAGHEVILI-AR   50 (318)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCEEEEE-CC
T ss_pred             CcEEEECcCHHHHHHHHHHHHCCCeEEEE-Ec
Confidence            47999999999999999999999999999 55

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}

Probab=93.37  E-value=0.099  Score=47.16  Aligned_cols=35  Identities=20%  Similarity=0.164  Sum_probs=31.8

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCC
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDI   41 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~   41 (379)
                      ..|+|.|+|..|..++..|.+.|++|+++.|....
T Consensus         4 ~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~~~   38 (286)
T 3gpi_A            4 SKILIAGCGDLGLELARRLTAQGHEVTGLRRSAQP   38 (286)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEEECTTSC
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCccc
Confidence            36999999999999999999999999999988643

>3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii}

Probab=93.35  E-value=0.098  Score=47.54  Aligned_cols=33  Identities=15%  Similarity=0.294  Sum_probs=30.5

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCC---cEEEEccCC
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKNQY---EVNLYEARE   39 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~G~---~V~viE~~~   39 (379)
                      ..|.|||+|-.|.+.|..|++.|+   +|+++++++
T Consensus         4 ~~I~iIG~G~mG~aia~~l~~~g~~~~~V~v~dr~~   39 (280)
T 3tri_A            4 SNITFIGGGNMARNIVVGLIANGYDPNRICVTNRSL   39 (280)
T ss_dssp             SCEEEESCSHHHHHHHHHHHHTTCCGGGEEEECSSS
T ss_pred             CEEEEEcccHHHHHHHHHHHHCCCCCCeEEEEeCCH
Confidence            479999999999999999999999   999999775

>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A*

Probab=93.33  E-value=0.093  Score=48.47  Aligned_cols=32  Identities=31%  Similarity=0.575  Sum_probs=29.9

Q ss_pred             cEEEECCChHHHHHHHHHHhCCC-cEEEEccCC
Q psy9141           8 SVVIVGGGLVGSLSACMFAKNQY-EVNLYEARE   39 (379)
Q Consensus         8 dVvIVGaGpaGl~~A~~La~~G~-~V~viE~~~   39 (379)
                      .|+|||||-+|..+|..|+..|+ +|+++|.+.
T Consensus         4 kI~VIGaG~vG~~~a~~la~~g~~~v~L~Di~~   36 (309)
T 1ur5_A            4 KISIIGAGFVGSTTAHWLAAKELGDIVLLDIVE   36 (309)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCSEEEEECSSS
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCCeEEEEeCCc
Confidence            79999999999999999999997 999999864

>2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans}

Probab=93.30  E-value=0.052  Score=53.46  Aligned_cols=33  Identities=30%  Similarity=0.505  Sum_probs=30.5

Q ss_pred             CcEEEECCChHHHHHHHHHHhC--CCcEEEEccCC
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKN--QYEVNLYEARE   39 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~--G~~V~viE~~~   39 (379)
                      ..|.|||+|..|+.+|..|++.  |++|+++|+++
T Consensus        10 mkI~VIG~G~vG~~~A~~La~~g~g~~V~~~D~~~   44 (481)
T 2o3j_A           10 SKVVCVGAGYVGGPTCAMIAHKCPHITVTVVDMNT   44 (481)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCH
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCH
Confidence            4799999999999999999998  79999999875

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1

Probab=93.26  E-value=0.16  Score=50.02  Aligned_cols=35  Identities=14%  Similarity=0.383  Sum_probs=32.6

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCC
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDI   41 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~   41 (379)
                      .+++|||+|+.|+-+|..|++.|.+|+++|+.+..
T Consensus       183 ~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~  217 (499)
T 1xdi_A          183 DHLIVVGSGVTGAEFVDAYTELGVPVTVVASQDHV  217 (499)
T ss_dssp             SSEEEESCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcc
Confidence            57999999999999999999999999999998754

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=93.22  E-value=0.035  Score=44.93  Aligned_cols=33  Identities=27%  Similarity=0.444  Sum_probs=30.1

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEccCC
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEARE   39 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~   39 (379)
                      ..|+|||+|..|..+|..|++.|.+|+++++.+
T Consensus        22 ~~v~iiG~G~iG~~~a~~l~~~g~~v~v~~r~~   54 (144)
T 3oj0_A           22 NKILLVGNGMLASEIAPYFSYPQYKVTVAGRNI   54 (144)
T ss_dssp             CEEEEECCSHHHHHHGGGCCTTTCEEEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCH
Confidence            479999999999999999999999999998764

>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*

Probab=93.22  E-value=0.093  Score=48.48  Aligned_cols=32  Identities=28%  Similarity=0.494  Sum_probs=29.4

Q ss_pred             cEEEECCChHHHHHHHHHHhC--CCcEEEEccCC
Q psy9141           8 SVVIVGGGLVGSLSACMFAKN--QYEVNLYEARE   39 (379)
Q Consensus         8 dVvIVGaGpaGl~~A~~La~~--G~~V~viE~~~   39 (379)
                      .|+|||+|..|..+|..|++.  |.+|+++|+++
T Consensus         2 kI~VIGaG~vG~~la~~la~~~~g~~V~l~D~~~   35 (310)
T 1guz_A            2 KITVIGAGNVGATTAFRLAEKQLARELVLLDVVE   35 (310)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSS
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCh
Confidence            599999999999999999985  78999999875

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=93.19  E-value=0.089  Score=50.53  Aligned_cols=35  Identities=17%  Similarity=0.318  Sum_probs=31.9

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCC
Q psy9141           6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEARED   40 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~   40 (379)
                      ...|+|||+|.+|+.+|..+...|.+|+++|+++.
T Consensus       172 g~~V~ViGaG~iG~~aa~~a~~~Ga~V~v~D~~~~  206 (401)
T 1x13_A          172 PAKVMVIGAGVAGLAAIGAANSLGAIVRAFDTRPE  206 (401)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCGG
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence            45799999999999999999999999999998764

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=93.17  E-value=0.1  Score=49.82  Aligned_cols=34  Identities=18%  Similarity=0.194  Sum_probs=31.3

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCcEEEEccCC
Q psy9141           6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEARE   39 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~   39 (379)
                      ...|+|+|+|.+|+.+|..+...|.+|+++|+++
T Consensus       172 g~~V~ViGaG~iG~~aa~~a~~~Ga~V~~~d~~~  205 (384)
T 1l7d_A          172 PARVLVFGVGVAGLQAIATAKRLGAVVMATDVRA  205 (384)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCS
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            4689999999999999999999999999999775

>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}

Probab=93.16  E-value=0.089  Score=48.97  Aligned_cols=32  Identities=22%  Similarity=0.165  Sum_probs=29.8

Q ss_pred             cEEEECCChHHHH-HHHHHHhCCCcEEEEccCC
Q psy9141           8 SVVIVGGGLVGSL-SACMFAKNQYEVNLYEARE   39 (379)
Q Consensus         8 dVvIVGaGpaGl~-~A~~La~~G~~V~viE~~~   39 (379)
                      .|.|||.|.+|++ +|..|+++|++|++.|+++
T Consensus         6 ~i~~iGiGg~Gms~~A~~L~~~G~~V~~~D~~~   38 (326)
T 3eag_A            6 HIHIIGIGGTFMGGLAAIAKEAGFEVSGCDAKM   38 (326)
T ss_dssp             EEEEESCCSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             EEEEEEECHHHHHHHHHHHHhCCCEEEEEcCCC
Confidence            7999999999996 8999999999999999875

>2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A*

Probab=93.10  E-value=0.093  Score=48.69  Aligned_cols=35  Identities=17%  Similarity=0.103  Sum_probs=30.9

Q ss_pred             CCCcEEEECCChHHHHHHHHHHhCC----CcEEEEccCC
Q psy9141           5 SKKSVVIVGGGLVGSLSACMFAKNQ----YEVNLYEARE   39 (379)
Q Consensus         5 ~~~dVvIVGaGpaGl~~A~~La~~G----~~V~viE~~~   39 (379)
                      ....|.|||+|-.|.++|..|++.|    ++|+++++++
T Consensus        21 ~~mkI~iIG~G~mG~ala~~L~~~G~~~~~~V~v~~r~~   59 (322)
T 2izz_A           21 QSMSVGFIGAGQLAFALAKGFTAAGVLAAHKIMASSPDM   59 (322)
T ss_dssp             -CCCEEEESCSHHHHHHHHHHHHTTSSCGGGEEEECSCT
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCCCcceEEEECCCc
Confidence            3457999999999999999999999    7999998775

>3dfu_A Uncharacterized protein from 6-phosphogluconate dehydrogenase-like family; putative rossmann-like dehydrogenase, structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}

Probab=93.02  E-value=0.034  Score=49.21  Aligned_cols=33  Identities=18%  Similarity=0.014  Sum_probs=30.4

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCcEEEEccC
Q psy9141           6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAR   38 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~   38 (379)
                      ..+|.|||+|..|.++|..|++.|++|+++++.
T Consensus         6 ~mkI~IIG~G~~G~sLA~~L~~~G~~V~~~~~~   38 (232)
T 3dfu_A            6 RLRVGIFDDGSSTVNMAEKLDSVGHYVTVLHAP   38 (232)
T ss_dssp             CCEEEEECCSCCCSCHHHHHHHTTCEEEECSSG
T ss_pred             CcEEEEEeeCHHHHHHHHHHHHCCCEEEEecCH
Confidence            457999999999999999999999999999874

>1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A*

Probab=93.02  E-value=0.048  Score=51.16  Aligned_cols=35  Identities=37%  Similarity=0.437  Sum_probs=31.8

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCC-------CcEEEEccCCC
Q psy9141           6 KKSVVIVGGGLVGSLSACMFAKNQ-------YEVNLYEARED   40 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La~~G-------~~V~viE~~~~   40 (379)
                      ...|.|||+|-.|.++|..|++.|       ++|+++++++.
T Consensus         8 ~mkI~iIG~G~mG~~~a~~l~~~g~~~~~~~~~V~~~~r~~~   49 (354)
T 1x0v_A            8 SKKVCIVGSGNWGSAIAKIVGGNAAQLAQFDPRVTMWVFEED   49 (354)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHHHCTTEEEEEEEECCCCB
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEcChh
Confidence            347999999999999999999999       89999998764

>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri}

Probab=93.00  E-value=0.074  Score=48.59  Aligned_cols=33  Identities=21%  Similarity=0.256  Sum_probs=30.5

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEccCC
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEARE   39 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~   39 (379)
                      ..|.|||+|-.|...|..|++.|++|+++++++
T Consensus         5 ~~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~   37 (301)
T 3cky_A            5 IKIGFIGLGAMGKPMAINLLKEGVTVYAFDLME   37 (301)
T ss_dssp             CEEEEECCCTTHHHHHHHHHHTTCEEEEECSSH
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCeEEEEeCCH
Confidence            479999999999999999999999999998764

>4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A

Probab=92.91  E-value=0.11  Score=51.24  Aligned_cols=35  Identities=9%  Similarity=0.225  Sum_probs=32.2

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCC
Q psy9141           6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEARED   40 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~   40 (379)
                      ..+|.|||.|..|..+|..|++.|++|+++++++.
T Consensus         4 ~~kIgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~   38 (484)
T 4gwg_A            4 QADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVS   38 (484)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTH
T ss_pred             CCEEEEEChhHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            34799999999999999999999999999998863

>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}

Probab=92.89  E-value=0.095  Score=48.58  Aligned_cols=34  Identities=15%  Similarity=0.209  Sum_probs=31.6

Q ss_pred             CcEEEECCChHHHHHHHHHHhCC-CcEEEEccCCC
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKNQ-YEVNLYEARED   40 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~G-~~V~viE~~~~   40 (379)
                      ..|.|||.|..|..+|..|++.| ++|+++++++.
T Consensus        25 m~IgvIG~G~mG~~lA~~L~~~G~~~V~~~dr~~~   59 (317)
T 4ezb_A           25 TTIAFIGFGEAAQSIAGGLGGRNAARLAAYDLRFN   59 (317)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCSEEEEECGGGG
T ss_pred             CeEEEECccHHHHHHHHHHHHcCCCeEEEEeCCCc
Confidence            47999999999999999999999 99999998863

>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*

Probab=92.86  E-value=0.12  Score=44.97  Aligned_cols=33  Identities=18%  Similarity=0.174  Sum_probs=30.6

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEccCC
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEARE   39 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~   39 (379)
                      ..|.|||+|-.|...|..|++.|++|+++++++
T Consensus        29 ~~I~iiG~G~~G~~la~~l~~~g~~V~~~~r~~   61 (215)
T 2vns_A           29 PKVGILGSGDFARSLATRLVGSGFKVVVGSRNP   61 (215)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSH
T ss_pred             CEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            479999999999999999999999999999864

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=92.84  E-value=0.08  Score=50.06  Aligned_cols=34  Identities=32%  Similarity=0.499  Sum_probs=31.0

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCcEEEEccCC
Q psy9141           6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEARE   39 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~   39 (379)
                      ...|+|+|+|.+|++++..|+..|.+|+++++++
T Consensus       167 ~~~VlViGaGgvG~~aa~~a~~~Ga~V~v~dr~~  200 (361)
T 1pjc_A          167 PGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINV  200 (361)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            3579999999999999999999999999998764

>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6

Probab=92.84  E-value=0.094  Score=47.41  Aligned_cols=32  Identities=25%  Similarity=0.463  Sum_probs=29.2

Q ss_pred             cEEEECCChHHHHHHHHHHhCCC--cEEEEccCC
Q psy9141           8 SVVIVGGGLVGSLSACMFAKNQY--EVNLYEARE   39 (379)
Q Consensus         8 dVvIVGaGpaGl~~A~~La~~G~--~V~viE~~~   39 (379)
                      .|.|||+|..|.++|..|++.|+  +|+++++++
T Consensus         3 ~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~   36 (281)
T 2g5c_A            3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINP   36 (281)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCH
T ss_pred             EEEEEecCHHHHHHHHHHHhcCCCcEEEEEeCCH
Confidence            69999999999999999999998  899998653

>2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A*

Probab=92.69  E-value=0.099  Score=51.35  Aligned_cols=34  Identities=21%  Similarity=0.330  Sum_probs=31.5

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCcEEEEccCC
Q psy9141           6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEARE   39 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~   39 (379)
                      +.+|.|||+|-.|..+|..|++.|++|+++++.+
T Consensus         5 ~~~IgvIG~G~mG~~lA~~L~~~G~~V~v~dr~~   38 (474)
T 2iz1_A            5 QANFGVVGMAVMGKNLALNVESRGYTVAIYNRTT   38 (474)
T ss_dssp             TBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred             CCcEEEEeeHHHHHHHHHHHHhCCCEEEEEcCCH
Confidence            4579999999999999999999999999999875

>1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6

Probab=92.68  E-value=0.071  Score=49.43  Aligned_cols=30  Identities=30%  Similarity=0.475  Sum_probs=28.8

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEcc
Q psy9141           8 SVVIVGGGLVGSLSACMFAKNQYEVNLYEA   37 (379)
Q Consensus         8 dVvIVGaGpaGl~~A~~La~~G~~V~viE~   37 (379)
                      .|.|||+|-.|..+|..|++.|++|+++++
T Consensus         2 ~I~iiG~G~mG~~~a~~L~~~g~~V~~~~r   31 (335)
T 1txg_A            2 IVSILGAGAMGSALSVPLVDNGNEVRIWGT   31 (335)
T ss_dssp             EEEEESCCHHHHHHHHHHHHHCCEEEEECC
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCeEEEEEc
Confidence            599999999999999999999999999997

>2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A*

Probab=92.67  E-value=0.098  Score=47.35  Aligned_cols=31  Identities=19%  Similarity=0.316  Sum_probs=28.8

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEccCC
Q psy9141           8 SVVIVGGGLVGSLSACMFAKNQYEVNLYEARE   39 (379)
Q Consensus         8 dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~   39 (379)
                      .|.|||+|..|...|..|++ |++|+++++++
T Consensus         3 ~i~iiG~G~~G~~~a~~l~~-g~~V~~~~~~~   33 (289)
T 2cvz_A            3 KVAFIGLGAMGYPMAGHLAR-RFPTLVWNRTF   33 (289)
T ss_dssp             CEEEECCSTTHHHHHHHHHT-TSCEEEECSST
T ss_pred             eEEEEcccHHHHHHHHHHhC-CCeEEEEeCCH
Confidence            59999999999999999999 99999998764

>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*

Probab=92.66  E-value=0.14  Score=43.36  Aligned_cols=34  Identities=24%  Similarity=0.381  Sum_probs=31.2

Q ss_pred             CcEEEECC-ChHHHHHHHHHHhCCCcEEEEccCCC
Q psy9141           7 KSVVIVGG-GLVGSLSACMFAKNQYEVNLYEARED   40 (379)
Q Consensus         7 ~dVvIVGa-GpaGl~~A~~La~~G~~V~viE~~~~   40 (379)
                      ..|+|+|| |-.|..++..|.+.|++|+++.|++.
T Consensus         4 ~~ilVtGatG~iG~~l~~~l~~~g~~V~~~~r~~~   38 (206)
T 1hdo_A            4 KKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSS   38 (206)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGG
T ss_pred             CEEEEEcCCcHHHHHHHHHHHHCCCeEEEEEeChh
Confidence            46999998 99999999999999999999998764

>1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A*

Probab=92.61  E-value=0.072  Score=51.17  Aligned_cols=31  Identities=23%  Similarity=0.408  Sum_probs=29.2

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEccCC
Q psy9141           8 SVVIVGGGLVGSLSACMFAKNQYEVNLYEARE   39 (379)
Q Consensus         8 dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~   39 (379)
                      .|.|||+|..|+.+|..|++ |++|+++|+++
T Consensus         2 kI~VIG~G~vG~~~A~~La~-G~~V~~~d~~~   32 (402)
T 1dlj_A            2 KIAVAGSGYVGLSLGVLLSL-QNEVTIVDILP   32 (402)
T ss_dssp             EEEEECCSHHHHHHHHHHTT-TSEEEEECSCH
T ss_pred             EEEEECCCHHHHHHHHHHhC-CCEEEEEECCH
Confidence            59999999999999999999 99999999875

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}

Probab=92.59  E-value=0.23  Score=48.38  Aligned_cols=36  Identities=25%  Similarity=0.374  Sum_probs=32.9

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCC
Q psy9141           6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDI   41 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~   41 (379)
                      ..+++|||+|+.|+-+|..|++.|.+|+++++.+..
T Consensus       170 ~~~v~ViGgG~~g~e~A~~l~~~g~~Vt~v~~~~~~  205 (463)
T 4dna_A          170 PESILIAGGGYIAVEFANIFHGLGVKTTLIYRGKEI  205 (463)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcc
Confidence            357999999999999999999999999999998754

>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis}

Probab=92.53  E-value=0.078  Score=47.52  Aligned_cols=33  Identities=21%  Similarity=0.463  Sum_probs=29.9

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCc-EEEEccCC
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKNQYE-VNLYEARE   39 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~G~~-V~viE~~~   39 (379)
                      ..|.|||+|-.|...|..|++.|++ |.++++++
T Consensus        11 m~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~~~~   44 (266)
T 3d1l_A           11 TPIVLIGAGNLATNLAKALYRKGFRIVQVYSRTE   44 (266)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSH
T ss_pred             CeEEEEcCCHHHHHHHHHHHHCCCeEEEEEeCCH
Confidence            5799999999999999999999998 89998753

>2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae}

Probab=92.52  E-value=0.14  Score=50.65  Aligned_cols=34  Identities=15%  Similarity=0.221  Sum_probs=31.8

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEccCCC
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEARED   40 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~   40 (379)
                      ..|.|||.|..|..+|..|+++|++|+++++.+.
T Consensus        11 ~~IgvIGlG~MG~~lA~~La~~G~~V~v~dr~~~   44 (497)
T 2p4q_A           11 ADFGLIGLAVMGQNLILNAADHGFTVCAYNRTQS   44 (497)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSH
T ss_pred             CCEEEEeeHHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            5899999999999999999999999999998763

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=92.51  E-value=0.13  Score=44.93  Aligned_cols=36  Identities=19%  Similarity=0.148  Sum_probs=31.4

Q ss_pred             CCCCcEEEECC-ChHHHHHHHHHHhCCCcEEEEccCC
Q psy9141           4 NSKKSVVIVGG-GLVGSLSACMFAKNQYEVNLYEARE   39 (379)
Q Consensus         4 m~~~dVvIVGa-GpaGl~~A~~La~~G~~V~viE~~~   39 (379)
                      ++...|+|.|| |-.|..++..|++.|++|+++.|++
T Consensus        19 l~~~~ilVtGatG~iG~~l~~~L~~~G~~V~~~~R~~   55 (236)
T 3e8x_A           19 FQGMRVLVVGANGKVARYLLSELKNKGHEPVAMVRNE   55 (236)
T ss_dssp             --CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSG
T ss_pred             cCCCeEEEECCCChHHHHHHHHHHhCCCeEEEEECCh
Confidence            34567999998 9999999999999999999999875

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=92.39  E-value=0.11  Score=49.21  Aligned_cols=34  Identities=32%  Similarity=0.451  Sum_probs=31.1

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCcEEEEccCC
Q psy9141           6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEARE   39 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~   39 (379)
                      ...|+|+|+|.+|..+|..|+..|.+|+++|+++
T Consensus       166 ~~~V~ViGaG~iG~~~a~~l~~~Ga~V~~~d~~~  199 (369)
T 2eez_A          166 PASVVILGGGTVGTNAAKIALGMGAQVTILDVNH  199 (369)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            4579999999999999999999999999998764

>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A

Probab=92.38  E-value=0.054  Score=47.66  Aligned_cols=34  Identities=18%  Similarity=0.047  Sum_probs=30.5

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCC
Q psy9141           6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEARED   40 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~   40 (379)
                      +..|+|+|+|..|..+|..|.+.|+ |+++|+++.
T Consensus         9 ~~~viI~G~G~~G~~la~~L~~~g~-v~vid~~~~   42 (234)
T 2aef_A            9 SRHVVICGWSESTLECLRELRGSEV-FVLAEDENV   42 (234)
T ss_dssp             -CEEEEESCCHHHHHHHHHSTTSEE-EEEESCGGG
T ss_pred             CCEEEEECCChHHHHHHHHHHhCCe-EEEEECCHH
Confidence            3479999999999999999999999 999998864

>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1

Probab=92.37  E-value=0.11  Score=47.96  Aligned_cols=32  Identities=25%  Similarity=0.280  Sum_probs=29.6

Q ss_pred             cEEEECCChHHHHHHHHHHhCC--CcEEEEccCC
Q psy9141           8 SVVIVGGGLVGSLSACMFAKNQ--YEVNLYEARE   39 (379)
Q Consensus         8 dVvIVGaGpaGl~~A~~La~~G--~~V~viE~~~   39 (379)
                      .|+|||+|-.|.++|..|++.|  .+|+++|+++
T Consensus         3 kI~VIGaG~~G~~la~~L~~~g~~~~V~l~d~~~   36 (309)
T 1hyh_A            3 KIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANE   36 (309)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCEEEEEcCCH
Confidence            6999999999999999999999  6899999864

>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6

Probab=92.25  E-value=0.1  Score=47.60  Aligned_cols=33  Identities=18%  Similarity=0.277  Sum_probs=30.3

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEccCC
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEARE   39 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~   39 (379)
                      ..|.|||+|..|...|..|++.|++|+++++++
T Consensus         6 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~   38 (299)
T 1vpd_A            6 MKVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNP   38 (299)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             ceEEEECchHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            379999999999999999999999999998764

>2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes}

Probab=92.22  E-value=0.12  Score=49.14  Aligned_cols=36  Identities=19%  Similarity=0.215  Sum_probs=32.7

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHhCCC-cEEEEccCC
Q psy9141           4 NSKKSVVIVGGGLVGSLSACMFAKNQY-EVNLYEARE   39 (379)
Q Consensus         4 m~~~dVvIVGaGpaGl~~A~~La~~G~-~V~viE~~~   39 (379)
                      .++..|+|+|||-+|+.+|..|...|. +|+++|++-
T Consensus       186 l~d~kVVi~GAGaAG~~iA~ll~~~Ga~~I~v~D~~G  222 (398)
T 2a9f_A          186 LDEVSIVVNGGGSAGLSITRKLLAAGATKVTVVDKFG  222 (398)
T ss_dssp             TTSCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTE
T ss_pred             CCccEEEEECCCHHHHHHHHHHHHcCCCeEEEEECCC
Confidence            456789999999999999999999999 999999874

>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5

Probab=92.22  E-value=0.17  Score=45.73  Aligned_cols=35  Identities=9%  Similarity=0.080  Sum_probs=31.0

Q ss_pred             CCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCC
Q psy9141           5 SKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEARE   39 (379)
Q Consensus         5 ~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~   39 (379)
                      +...|+|+|+|-+|.++|..|++.|.+|+|++|+.
T Consensus       118 ~~k~vlViGaGg~g~a~a~~L~~~G~~V~v~~R~~  152 (271)
T 1nyt_A          118 PGLRILLIGAGGASRGVLLPLLSLDCAVTITNRTV  152 (271)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHcCCEEEEEECCH
Confidence            34579999999999999999999999999998763

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6

Probab=92.21  E-value=0.12  Score=46.54  Aligned_cols=32  Identities=19%  Similarity=0.189  Sum_probs=29.4

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEccCC
Q psy9141           8 SVVIVGGGLVGSLSACMFAKNQYEVNLYEARE   39 (379)
Q Consensus         8 dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~   39 (379)
                      .|.|||+|..|.++|..|++.|++|+++++++
T Consensus         2 ~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~   33 (279)
T 2f1k_A            2 KIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQ   33 (279)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEEEcCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            59999999999999999999999999998653

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}

Probab=92.18  E-value=0.14  Score=50.22  Aligned_cols=36  Identities=36%  Similarity=0.481  Sum_probs=32.8

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCC
Q psy9141           6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDI   41 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~   41 (379)
                      ..+|+|||+|+.|+-+|..|++.|.+|+++++.+..
T Consensus       191 ~~~v~ViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~  226 (484)
T 3o0h_A          191 PKSIVIVGGGYIGVEFANIFHGLGVKTTLLHRGDLI  226 (484)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             CCcEEEECcCHHHHHHHHHHHHcCCeEEEEECCCcc
Confidence            358999999999999999999999999999998754

>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6

Probab=92.16  E-value=0.14  Score=46.87  Aligned_cols=32  Identities=28%  Similarity=0.535  Sum_probs=30.0

Q ss_pred             cEEEEC-CChHHHHHHHHHHhCCCcEEEEccCC
Q psy9141           8 SVVIVG-GGLVGSLSACMFAKNQYEVNLYEARE   39 (379)
Q Consensus         8 dVvIVG-aGpaGl~~A~~La~~G~~V~viE~~~   39 (379)
                      .|.||| +|-.|.++|..|++.|++|+++++++
T Consensus        23 ~I~iIGg~G~mG~~la~~l~~~G~~V~~~~~~~   55 (298)
T 2pv7_A           23 KIVIVGGYGKLGGLFARYLRASGYPISILDRED   55 (298)
T ss_dssp             CEEEETTTSHHHHHHHHHHHTTTCCEEEECTTC
T ss_pred             EEEEEcCCCHHHHHHHHHHHhCCCeEEEEECCc
Confidence            699999 99999999999999999999998764

>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A*

Probab=92.03  E-value=0.28  Score=46.63  Aligned_cols=36  Identities=22%  Similarity=0.481  Sum_probs=32.2

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCC
Q psy9141           6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDI   41 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~   41 (379)
                      ...|+|||+|..|..+|.++.+.|++|++++..+..
T Consensus        14 ~k~IlIlG~G~~g~~la~aa~~~G~~vi~~d~~~~~   49 (389)
T 3q2o_A           14 GKTIGIIGGGQLGRMMALAAKEMGYKIAVLDPTKNS   49 (389)
T ss_dssp             TSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSTTC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCCC
Confidence            457999999999999999999999999999977543

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=91.98  E-value=0.13  Score=48.85  Aligned_cols=35  Identities=20%  Similarity=0.256  Sum_probs=31.5

Q ss_pred             CCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCC
Q psy9141           5 SKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEARE   39 (379)
Q Consensus         5 ~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~   39 (379)
                      ....|+|||+|.+|..+|..++..|.+|+++|+++
T Consensus       167 ~g~~V~ViG~G~iG~~~a~~a~~~Ga~V~~~d~~~  201 (377)
T 2vhw_A          167 EPADVVVIGAGTAGYNAARIANGMGATVTVLDINI  201 (377)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            34679999999999999999999999999998764

>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A*

Probab=91.98  E-value=0.17  Score=47.33  Aligned_cols=36  Identities=11%  Similarity=0.245  Sum_probs=32.4

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCC-cEEEEccCCCC
Q psy9141           6 KKSVVIVGGGLVGSLSACMFAKNQY-EVNLYEAREDI   41 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La~~G~-~V~viE~~~~~   41 (379)
                      ...|+|||+|-.|+.+|..|++.|. +++|+|.+...
T Consensus        34 ~~~VlIvGaGGlGs~va~~La~aGVg~ItlvD~D~Ve   70 (340)
T 3rui_A           34 NTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGTVS   70 (340)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCBCC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCEEEEecCCEec
Confidence            4689999999999999999999998 79999988644

>4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A

Probab=91.97  E-value=0.22  Score=48.02  Aligned_cols=37  Identities=19%  Similarity=0.288  Sum_probs=32.7

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCC
Q psy9141           4 NSKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEARED   40 (379)
Q Consensus         4 m~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~   40 (379)
                      |+...|+|+|+|..|..++.++.+.|++|.++|..+.
T Consensus        33 ~~~~~IlIlG~G~lg~~~~~aa~~lG~~v~v~d~~~~   69 (419)
T 4e4t_A           33 LPGAWLGMVGGGQLGRMFCFAAQSMGYRVAVLDPDPA   69 (419)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCTT
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCc
Confidence            4456899999999999999999999999999987653

>2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial target, type II fatty acid biosynthesis, enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A {Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A*

Probab=91.94  E-value=0.17  Score=45.44  Aligned_cols=39  Identities=18%  Similarity=-0.010  Sum_probs=32.9

Q ss_pred             CCCCCCCcEEEECC---ChHHHHHHHHHHhCCCcEEEEccCC
Q psy9141           1 MKCNSKKSVVIVGG---GLVGSLSACMFAKNQYEVNLYEARE   39 (379)
Q Consensus         1 M~~m~~~dVvIVGa---GpaGl~~A~~La~~G~~V~viE~~~   39 (379)
                      |++|+...|+|.||   |-.|..+|..|++.|.+|++++|+.
T Consensus         1 M~~l~~k~vlVTGas~~~gIG~~~a~~l~~~G~~V~~~~r~~   42 (275)
T 2pd4_A            1 MGFLKGKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNE   42 (275)
T ss_dssp             -CTTTTCEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESST
T ss_pred             CCCCCCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEeCCH
Confidence            55555567999997   5889999999999999999999875

>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A*

Probab=91.92  E-value=0.11  Score=47.47  Aligned_cols=36  Identities=31%  Similarity=0.397  Sum_probs=32.1

Q ss_pred             CCCcEEEECCChHHHHHHHHHHhCCC-cEEEEccCCC
Q psy9141           5 SKKSVVIVGGGLVGSLSACMFAKNQY-EVNLYEARED   40 (379)
Q Consensus         5 ~~~dVvIVGaGpaGl~~A~~La~~G~-~V~viE~~~~   40 (379)
                      +...|+|||+|-.|..+|..|++.|. +++|+|.+..
T Consensus        35 ~~~~VlVvGaGGlGs~va~~La~aGVG~i~lvD~D~V   71 (292)
T 3h8v_A           35 RTFAVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYDKV   71 (292)
T ss_dssp             GGCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCBC
T ss_pred             hCCeEEEECcCHHHHHHHHHHHHcCCCEEEEECCCcc
Confidence            34689999999999999999999998 8999997763

>3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis}

Probab=91.90  E-value=0.19  Score=45.83  Aligned_cols=35  Identities=26%  Similarity=0.437  Sum_probs=32.3

Q ss_pred             CCcEEEECC-ChHHHHHHHHHHhCCCcEEEEccCCC
Q psy9141           6 KKSVVIVGG-GLVGSLSACMFAKNQYEVNLYEARED   40 (379)
Q Consensus         6 ~~dVvIVGa-GpaGl~~A~~La~~G~~V~viE~~~~   40 (379)
                      ...|+|.|| |..|..++..|.+.|++|+++.|.+.
T Consensus         7 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~   42 (321)
T 3vps_A            7 KHRILITGGAGFIGGHLARALVASGEEVTVLDDLRV   42 (321)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCCEEEECCCSS
T ss_pred             CCeEEEECCCChHHHHHHHHHHHCCCEEEEEecCCc
Confidence            457999998 99999999999999999999998875

>1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum}

Probab=91.87  E-value=0.11  Score=49.31  Aligned_cols=33  Identities=24%  Similarity=0.286  Sum_probs=30.7

Q ss_pred             cEEEECCChHHHHHHHHHHhCC-------CcEEEEccCCC
Q psy9141           8 SVVIVGGGLVGSLSACMFAKNQ-------YEVNLYEARED   40 (379)
Q Consensus         8 dVvIVGaGpaGl~~A~~La~~G-------~~V~viE~~~~   40 (379)
                      .|.|||+|-.|.++|..|++.|       ++|+++++++.
T Consensus        23 kI~iIGaG~mG~alA~~L~~~G~~~~~~~~~V~~~~r~~~   62 (375)
T 1yj8_A           23 KISILGSGNWASAISKVVGTNAKNNYLFENEVRMWIRDEF   62 (375)
T ss_dssp             CEEEECCSHHHHHHHHHHHHHHHHCTTBCSCEEEECCSCC
T ss_pred             EEEEECcCHHHHHHHHHHHHcCCccCCCCCeEEEEECChh
Confidence            6999999999999999999999       99999998754

>3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A*

Probab=91.85  E-value=0.15  Score=47.43  Aligned_cols=36  Identities=25%  Similarity=0.418  Sum_probs=31.6

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHhCCC--cEEEEccCC
Q psy9141           4 NSKKSVVIVGGGLVGSLSACMFAKNQY--EVNLYEARE   39 (379)
Q Consensus         4 m~~~dVvIVGaGpaGl~~A~~La~~G~--~V~viE~~~   39 (379)
                      +....|+|||+|.+|.++|..|+..|+  ++.++|...
T Consensus         7 ~~~~kV~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~~   44 (326)
T 3vku_A            7 KDHQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIFK   44 (326)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCH
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCCh
Confidence            445689999999999999999999988  899999753

>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A*

Probab=91.83  E-value=0.1  Score=47.88  Aligned_cols=32  Identities=38%  Similarity=0.398  Sum_probs=29.7

Q ss_pred             cEEEECCChHHHHHHHHHHhCCC--cEEEEccCC
Q psy9141           8 SVVIVGGGLVGSLSACMFAKNQY--EVNLYEARE   39 (379)
Q Consensus         8 dVvIVGaGpaGl~~A~~La~~G~--~V~viE~~~   39 (379)
                      .|+|||+|..|.++|..|++.|+  +|+++|+.+
T Consensus         2 kI~ViGaG~vG~~la~~l~~~~~~~~v~L~D~~~   35 (294)
T 1oju_A            2 KLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAE   35 (294)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCeEEEEECCh
Confidence            59999999999999999999998  899999865

>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*

Probab=91.75  E-value=0.17  Score=43.48  Aligned_cols=32  Identities=28%  Similarity=0.280  Sum_probs=29.6

Q ss_pred             cEEEEC-CChHHHHHHHHHHhCCCcEEEEccCC
Q psy9141           8 SVVIVG-GGLVGSLSACMFAKNQYEVNLYEARE   39 (379)
Q Consensus         8 dVvIVG-aGpaGl~~A~~La~~G~~V~viE~~~   39 (379)
                      .|+||| +|-.|...|..|++.|++|++++|++
T Consensus         2 ~i~iiGa~G~~G~~ia~~l~~~g~~V~~~~r~~   34 (212)
T 1jay_A            2 RVALLGGTGNLGKGLALRLATLGHEIVVGSRRE   34 (212)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTTTCEEEEEESSH
T ss_pred             eEEEEcCCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            599999 99999999999999999999998764

>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1

Probab=91.74  E-value=0.14  Score=47.56  Aligned_cols=32  Identities=31%  Similarity=0.425  Sum_probs=29.8

Q ss_pred             cEEEECCChHHHHHHHHHHhCCC--cEEEEccCC
Q psy9141           8 SVVIVGGGLVGSLSACMFAKNQY--EVNLYEARE   39 (379)
Q Consensus         8 dVvIVGaGpaGl~~A~~La~~G~--~V~viE~~~   39 (379)
                      .|.|||+|-.|.++|..|++.|+  +|+++|+++
T Consensus         2 kI~VIGaG~~G~~la~~l~~~g~~~~V~l~D~~~   35 (319)
T 1a5z_A            2 KIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDK   35 (319)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCCh
Confidence            59999999999999999999999  999999864

>3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579}

Probab=91.74  E-value=0.18  Score=44.67  Aligned_cols=32  Identities=9%  Similarity=0.137  Sum_probs=29.9

Q ss_pred             cEEEECCChHHHHHHHHHHhCCC----cEEEEccCC
Q psy9141           8 SVVIVGGGLVGSLSACMFAKNQY----EVNLYEARE   39 (379)
Q Consensus         8 dVvIVGaGpaGl~~A~~La~~G~----~V~viE~~~   39 (379)
                      .|.|||+|-.|.+.|..|.+.|+    +|+++++++
T Consensus         4 ~i~iIG~G~mG~~~a~~l~~~g~~~~~~V~~~~r~~   39 (247)
T 3gt0_A            4 QIGFIGCGNMGMAMIGGMINKNIVSSNQIICSDLNT   39 (247)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTSSCGGGEEEECSCH
T ss_pred             eEEEECccHHHHHHHHHHHhCCCCCCCeEEEEeCCH
Confidence            69999999999999999999998    999998764

>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A

Probab=91.73  E-value=0.16  Score=45.33  Aligned_cols=35  Identities=23%  Similarity=0.297  Sum_probs=31.6

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCC-cEEEEccCCC
Q psy9141           6 KKSVVIVGGGLVGSLSACMFAKNQY-EVNLYEARED   40 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La~~G~-~V~viE~~~~   40 (379)
                      ...|+|||+|-.|..+|..|++.|. +++|+|.+..
T Consensus        28 ~~~VlvvG~GglG~~va~~La~~Gvg~i~lvD~d~v   63 (251)
T 1zud_1           28 DSQVLIIGLGGLGTPAALYLAGAGVGTLVLADDDDV   63 (251)
T ss_dssp             TCEEEEECCSTTHHHHHHHHHHTTCSEEEEECCCBC
T ss_pred             cCcEEEEccCHHHHHHHHHHHHcCCCeEEEEeCCCc
Confidence            4689999999999999999999998 7999998753

>2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A*

Probab=91.69  E-value=0.17  Score=46.02  Aligned_cols=32  Identities=25%  Similarity=0.354  Sum_probs=29.8

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEccCC
Q psy9141           8 SVVIVGGGLVGSLSACMFAKNQYEVNLYEARE   39 (379)
Q Consensus         8 dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~   39 (379)
                      .|.|||+|-.|...|..|++.|++|+++++++
T Consensus         2 ~i~iiG~G~mG~~~a~~l~~~g~~V~~~~~~~   33 (296)
T 2gf2_A            2 PVGFIGLGNMGNPMAKNLMKHGYPLIIYDVFP   33 (296)
T ss_dssp             CEEEECCSTTHHHHHHHHHHTTCCEEEECSST
T ss_pred             eEEEEeccHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            59999999999999999999999999998764

>4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A*

Probab=91.67  E-value=0.99  Score=44.41  Aligned_cols=35  Identities=11%  Similarity=0.155  Sum_probs=30.5

Q ss_pred             CcEEEECCChHHHHHHHHHHhC--CCcEEEEccCCCC
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKN--QYEVNLYEAREDI   41 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~--G~~V~viE~~~~~   41 (379)
                      .+|+|||+|-+|.=.+..|++.  +.+|+++=|.+..
T Consensus       247 KrV~VVG~G~SA~ei~~~L~~~~~~~~v~~~~R~~~~  283 (501)
T 4b63_A          247 YNIAVLGSGQSAAEIFHDLQKRYPNSRTTLIMRDSAM  283 (501)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSTTCEEEEECSSSSC
T ss_pred             cEEEEECCcHHHHHHHHHHHhcCCCceEEEEeCCCcc
Confidence            4799999999999999999875  6799999988643

>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*

Probab=91.60  E-value=0.16  Score=48.25  Aligned_cols=36  Identities=17%  Similarity=0.105  Sum_probs=32.6

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHhCCC-cEEEEccCC
Q psy9141           4 NSKKSVVIVGGGLVGSLSACMFAKNQY-EVNLYEARE   39 (379)
Q Consensus         4 m~~~dVvIVGaGpaGl~~A~~La~~G~-~V~viE~~~   39 (379)
                      .++..|+|+|||-+|..+|..|...|. +|+++|+.-
T Consensus       190 l~~~kVVv~GAGaAG~~iAkll~~~G~~~I~v~Dr~G  226 (388)
T 1vl6_A          190 IEEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRKG  226 (388)
T ss_dssp             TTTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTE
T ss_pred             CCCcEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCC
Confidence            456789999999999999999999998 799999874

>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A*

Probab=91.59  E-value=0.12  Score=50.03  Aligned_cols=34  Identities=26%  Similarity=0.418  Sum_probs=31.6

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEccCCC
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEARED   40 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~   40 (379)
                      ....|||.|..|+.+|..|++.|++|+++|+++.
T Consensus        12 ~~~~ViGlGyvGlp~A~~La~~G~~V~~~D~~~~   45 (431)
T 3ojo_A           12 SKLTVVGLGYIGLPTSIMFAKHGVDVLGVDINQQ   45 (431)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             CccEEEeeCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            4689999999999999999999999999998864

>1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A*

Probab=91.53  E-value=0.13  Score=45.86  Aligned_cols=32  Identities=22%  Similarity=0.371  Sum_probs=29.5

Q ss_pred             cEEEECCChHHHHHHHHHHhCC-CcEEEEccCC
Q psy9141           8 SVVIVGGGLVGSLSACMFAKNQ-YEVNLYEARE   39 (379)
Q Consensus         8 dVvIVGaGpaGl~~A~~La~~G-~~V~viE~~~   39 (379)
                      .|.|||+|-.|...|..|++.| ++|+++++++
T Consensus         2 ~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~r~~   34 (263)
T 1yqg_A            2 NVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGA   34 (263)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSCEEEEECSSH
T ss_pred             EEEEECchHHHHHHHHHHHHCCCCeEEEECCCH
Confidence            5999999999999999999999 9999998763

>3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis}

Probab=91.53  E-value=0.23  Score=46.57  Aligned_cols=36  Identities=28%  Similarity=0.410  Sum_probs=31.4

Q ss_pred             CCCCcEEEECC-ChHHHHHHHHHHhCCC--cEEEEccCC
Q psy9141           4 NSKKSVVIVGG-GLVGSLSACMFAKNQY--EVNLYEARE   39 (379)
Q Consensus         4 m~~~dVvIVGa-GpaGl~~A~~La~~G~--~V~viE~~~   39 (379)
                      |+...|+|||+ |-+|..+|..++..|.  +++++|...
T Consensus         6 ~~~~KV~ViGaaG~VG~~~a~~l~~~g~~~evvLiDi~~   44 (343)
T 3fi9_A            6 LTEEKLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPFA   44 (343)
T ss_dssp             SCSSEEEEETTTSHHHHHHHHHHHHTTCCSCEEEECSCH
T ss_pred             cCCCEEEEECCCChHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence            55568999997 9999999999999985  899999754

>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*

Probab=91.43  E-value=0.18  Score=49.28  Aligned_cols=34  Identities=21%  Similarity=0.332  Sum_probs=31.2

Q ss_pred             CCCcEEEECCChHHHHHHHHHHhCCCcEEEEccC
Q psy9141           5 SKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAR   38 (379)
Q Consensus         5 ~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~   38 (379)
                      +...|+|||+|.+|...|..|.+.|.+|+|++..
T Consensus        11 ~~~~vlVvGgG~va~~k~~~L~~~ga~V~vi~~~   44 (457)
T 1pjq_A           11 RDRDCLIVGGGDVAERKARLLLEAGARLTVNALT   44 (457)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHHTTBEEEEEESS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCcCEEEEEcCC
Confidence            4568999999999999999999999999999864

>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}

Probab=91.39  E-value=0.22  Score=45.69  Aligned_cols=34  Identities=9%  Similarity=0.122  Sum_probs=30.8

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCC-cEEEEccCC
Q psy9141           6 KKSVVIVGGGLVGSLSACMFAKNQY-EVNLYEARE   39 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La~~G~-~V~viE~~~   39 (379)
                      ...|+|+|+|.+|.++|..|++.|. +|+|+.|..
T Consensus       141 ~~~vlVlGaGg~g~aia~~L~~~G~~~V~v~nR~~  175 (297)
T 2egg_A          141 GKRILVIGAGGGARGIYFSLLSTAAERIDMANRTV  175 (297)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTTTCSEEEEECSSH
T ss_pred             CCEEEEECcHHHHHHHHHHHHHCCCCEEEEEeCCH
Confidence            4579999999999999999999998 899998764

>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*

Probab=91.36  E-value=0.24  Score=44.71  Aligned_cols=33  Identities=21%  Similarity=0.407  Sum_probs=30.7

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEccCC
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEARE   39 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~   39 (379)
                      ..|+|+|+|-+|-++|..|++.|.+|+|+.|..
T Consensus       119 k~vlvlGaGGaaraia~~L~~~G~~v~V~nRt~  151 (269)
T 3phh_A          119 QNALILGAGGSAKALACELKKQGLQVSVLNRSS  151 (269)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            479999999999999999999999999998875

>2we8_A Xanthine dehydrogenase; oxidoreductase; 2.30A {Mycobacterium smegmatis} PDB: 2we7_A

Probab=91.35  E-value=0.31  Score=46.45  Aligned_cols=38  Identities=18%  Similarity=0.143  Sum_probs=34.3

Q ss_pred             CCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCC
Q psy9141           5 SKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIR   42 (379)
Q Consensus         5 ~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~   42 (379)
                      ....++|+|||..|..+|..++..|++|+|+|.++...
T Consensus       203 P~~rL~IfGAGhva~ala~~a~~lg~~V~v~D~R~~~~  240 (386)
T 2we8_A          203 PRPRMLVFGAIDFAAAVAQQGAFLGYRVTVCDARPVFA  240 (386)
T ss_dssp             CCCEEEEECCSTHHHHHHHHHHHTTCEEEEEESCTTTS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCchhhc
Confidence            35689999999999999999999999999999887654

>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana}

Probab=91.33  E-value=0.16  Score=52.62  Aligned_cols=33  Identities=42%  Similarity=0.591  Sum_probs=31.0

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEccCCC
Q psy9141           8 SVVIVGGGLVGSLSACMFAKNQYEVNLYEARED   40 (379)
Q Consensus         8 dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~   40 (379)
                      .|.|||+|..|...|..|++.|++|+++|+++.
T Consensus       314 kV~VIGaG~MG~~iA~~la~aG~~V~l~D~~~~  346 (725)
T 2wtb_A          314 KVAIIGGGLMGSGIATALILSNYPVILKEVNEK  346 (725)
T ss_dssp             CEEEECCSHHHHHHHHHHHTTTCCEEEECSSHH
T ss_pred             EEEEEcCCHhhHHHHHHHHhCCCEEEEEECCHH
Confidence            699999999999999999999999999998763

>2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A*

Probab=91.32  E-value=0.2  Score=49.30  Aligned_cols=33  Identities=9%  Similarity=0.218  Sum_probs=30.8

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEccCC
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEARE   39 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~   39 (379)
                      .+|.|||+|-.|..+|..|++.|++|+++++++
T Consensus         3 m~IgvIG~G~mG~~lA~~La~~G~~V~v~dr~~   35 (482)
T 2pgd_A            3 ADIALIGLAVMGQNLILNMNDHGFVVCAFNRTV   35 (482)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSST
T ss_pred             CeEEEEChHHHHHHHHHHHHHCCCeEEEEeCCH
Confidence            369999999999999999999999999999875

>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber}

Probab=91.31  E-value=0.16  Score=47.05  Aligned_cols=32  Identities=28%  Similarity=0.493  Sum_probs=29.6

Q ss_pred             cEEEECCChHHHHHHHHHHhCCC--cEEEEccCC
Q psy9141           8 SVVIVGGGLVGSLSACMFAKNQY--EVNLYEARE   39 (379)
Q Consensus         8 dVvIVGaGpaGl~~A~~La~~G~--~V~viE~~~   39 (379)
                      .|.|||+|..|.++|..|++.|+  +++++|..+
T Consensus         2 kv~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~~   35 (314)
T 3nep_X            2 KVTVIGAGNVGATVAECVARQDVAKEVVMVDIKD   35 (314)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCSSEEEEECSST
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCch
Confidence            59999999999999999999987  899999875

>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A*

Probab=91.29  E-value=0.19  Score=49.23  Aligned_cols=35  Identities=26%  Similarity=0.236  Sum_probs=31.5

Q ss_pred             CCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCC
Q psy9141           5 SKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEARE   39 (379)
Q Consensus         5 ~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~   39 (379)
                      ....|+|+|+|..|.++|..|+..|.+|+++|+++
T Consensus       264 ~GKtVvVtGaGgIG~aiA~~Laa~GA~Viv~D~~~  298 (488)
T 3ond_A          264 AGKVAVVAGYGDVGKGCAAALKQAGARVIVTEIDP  298 (488)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             cCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence            34579999999999999999999999999998764

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=91.15  E-value=0.17  Score=45.52  Aligned_cols=33  Identities=9%  Similarity=0.140  Sum_probs=30.6

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEccCC
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEARE   39 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~   39 (379)
                      ..|+|.|||..|..++..|.+.|++|+++.|++
T Consensus         6 ~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~   38 (286)
T 3ius_A            6 GTLLSFGHGYTARVLSRALAPQGWRIIGTSRNP   38 (286)
T ss_dssp             CEEEEETCCHHHHHHHHHHGGGTCEEEEEESCG
T ss_pred             CcEEEECCcHHHHHHHHHHHHCCCEEEEEEcCh
Confidence            379999999999999999999999999998865

>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*

Probab=90.99  E-value=0.21  Score=49.98  Aligned_cols=36  Identities=19%  Similarity=0.374  Sum_probs=33.4

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCC
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIR   42 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~   42 (379)
                      .+++|||+|..|..+|..|.+.|++|+++|+++...
T Consensus       349 ~~viIiG~G~~G~~la~~L~~~g~~v~vid~d~~~~  384 (565)
T 4gx0_A          349 ELIFIIGHGRIGCAAAAFLDRKPVPFILIDRQESPV  384 (565)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSCCSS
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEEEECChHHH
Confidence            579999999999999999999999999999998653

>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A

Probab=90.98  E-value=0.16  Score=46.09  Aligned_cols=33  Identities=27%  Similarity=0.510  Sum_probs=29.0

Q ss_pred             CcEEEECCChHHHHHHHHHHhC--CCcEEEEccCC
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKN--QYEVNLYEARE   39 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~--G~~V~viE~~~   39 (379)
                      ..|.|||+|-.|.++|..|++.  |.+|+++++++
T Consensus         7 ~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~   41 (290)
T 3b1f_A            7 KTIYIAGLGLIGASLALGIKRDHPHYKIVGYNRSD   41 (290)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSH
T ss_pred             ceEEEEeeCHHHHHHHHHHHhCCCCcEEEEEcCCH
Confidence            4799999999999999999988  67899988653

>3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B*

Probab=90.98  E-value=0.12  Score=49.34  Aligned_cols=30  Identities=23%  Similarity=0.302  Sum_probs=27.9

Q ss_pred             cEEEECCChHHHHHHHHHHh-CCCcEEEEcc
Q psy9141           8 SVVIVGGGLVGSLSACMFAK-NQYEVNLYEA   37 (379)
Q Consensus         8 dVvIVGaGpaGl~~A~~La~-~G~~V~viE~   37 (379)
                      +|.|||+|-.|.++|..|++ .|++|+++++
T Consensus         4 kI~ViGaG~~G~~~a~~La~~~G~~V~~~~~   34 (404)
T 3c7a_A            4 KVCVCGGGNGAHTLSGLAASRDGVEVRVLTL   34 (404)
T ss_dssp             EEEEECCSHHHHHHHHHHTTSTTEEEEEECC
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCCEEEEEeC
Confidence            69999999999999999998 5999999983

>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2

Probab=90.77  E-value=0.26  Score=44.66  Aligned_cols=32  Identities=16%  Similarity=0.196  Sum_probs=30.0

Q ss_pred             cEEEECC-ChHHHHHHHHHHhCCCcEEEEccCC
Q psy9141           8 SVVIVGG-GLVGSLSACMFAKNQYEVNLYEARE   39 (379)
Q Consensus         8 dVvIVGa-GpaGl~~A~~La~~G~~V~viE~~~   39 (379)
                      .|+|+|| |-.|..++..|.+.|++|+++.|+.
T Consensus         6 ~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~   38 (308)
T 1qyc_A            6 RILLIGATGYIGRHVAKASLDLGHPTFLLVRES   38 (308)
T ss_dssp             CEEEESTTSTTHHHHHHHHHHTTCCEEEECCCC
T ss_pred             EEEEEcCCcHHHHHHHHHHHhCCCCEEEEECCc
Confidence            6999997 9999999999999999999999875

>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1

Probab=90.73  E-value=0.21  Score=46.46  Aligned_cols=33  Identities=27%  Similarity=0.358  Sum_probs=30.2

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCC--cEEEEccCC
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKNQY--EVNLYEARE   39 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~G~--~V~viE~~~   39 (379)
                      ..|.|||+|..|..+|..|+..|+  +++++|...
T Consensus        22 ~kV~ViGaG~vG~~~a~~la~~g~~~ev~L~Di~~   56 (330)
T 3ldh_A           22 NKITVVGCDAVGMADAISVLMKDLADEVALVDVME   56 (330)
T ss_dssp             CEEEEESTTHHHHHHHHHHHHHCCCSEEEEECSCH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCeEEEEECCH
Confidence            589999999999999999999998  899999754

>3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A

Probab=90.72  E-value=0.2  Score=47.21  Aligned_cols=35  Identities=26%  Similarity=0.402  Sum_probs=31.7

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCC-cEEEEccCCC
Q psy9141           6 KKSVVIVGGGLVGSLSACMFAKNQY-EVNLYEARED   40 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La~~G~-~V~viE~~~~   40 (379)
                      ...|+|||+|-.|..+|..|++.|. +++|+|.+..
T Consensus       118 ~~~VlvvG~GglGs~va~~La~aGvg~i~lvD~D~V  153 (353)
T 3h5n_A          118 NAKVVILGCGGIGNHVSVILATSGIGEIILIDNDQI  153 (353)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHTCSEEEEEECCBC
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCCeEEEECCCcC
Confidence            4689999999999999999999998 7999998753

>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ...

Probab=90.71  E-value=0.28  Score=45.70  Aligned_cols=35  Identities=26%  Similarity=0.388  Sum_probs=31.0

Q ss_pred             CCCcEEEECCChHHHHHHHHHHhCCC--cEEEEccCC
Q psy9141           5 SKKSVVIVGGGLVGSLSACMFAKNQY--EVNLYEARE   39 (379)
Q Consensus         5 ~~~dVvIVGaGpaGl~~A~~La~~G~--~V~viE~~~   39 (379)
                      +...|.|||+|-+|.++|+.|+..|+  +++++|...
T Consensus        18 ~~~kV~ViGaG~vG~~~a~~l~~~~~~~el~L~Di~~   54 (331)
T 4aj2_A           18 PQNKITVVGVGAVGMACAISILMKDLADELALVDVIE   54 (331)
T ss_dssp             CSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCceEEEEeCCh
Confidence            34689999999999999999999988  899999753

>3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A

Probab=90.64  E-value=0.33  Score=45.93  Aligned_cols=36  Identities=31%  Similarity=0.477  Sum_probs=32.4

Q ss_pred             CCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCC
Q psy9141           5 SKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEARED   40 (379)
Q Consensus         5 ~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~   40 (379)
                      +...|+|||+|..|..+|.++.+.|++|+++|..+.
T Consensus        11 ~~~~IlIlG~G~lg~~la~aa~~lG~~viv~d~~~~   46 (377)
T 3orq_A           11 FGATIGIIGGGQLGKMMAQSAQKMGYKVVVLDPSED   46 (377)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCTT
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCC
Confidence            346899999999999999999999999999997654

>4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans}

Probab=90.59  E-value=0.19  Score=46.15  Aligned_cols=36  Identities=17%  Similarity=0.337  Sum_probs=27.9

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCC
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIR   42 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~   42 (379)
                      .+|-+||-|..|...|..|.++|++|+++|+.+...
T Consensus         6 ~kIgfIGLG~MG~~mA~~L~~~G~~V~v~dr~~~~~   41 (297)
T 4gbj_A            6 EKIAFLGLGNLGTPIAEILLEAGYELVVWNRTASKA   41 (297)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEC-------
T ss_pred             CcEEEEecHHHHHHHHHHHHHCCCeEEEEeCCHHHH
Confidence            379999999999999999999999999999887543

>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}

Probab=90.59  E-value=0.23  Score=44.32  Aligned_cols=36  Identities=22%  Similarity=0.205  Sum_probs=31.0

Q ss_pred             CCCCcEEEECC-C-hHHHHHHHHHHhCCCcEEEEccCC
Q psy9141           4 NSKKSVVIVGG-G-LVGSLSACMFAKNQYEVNLYEARE   39 (379)
Q Consensus         4 m~~~dVvIVGa-G-paGl~~A~~La~~G~~V~viE~~~   39 (379)
                      ++..-|+|.|| | -.|..+|..|++.|.+|++++++.
T Consensus        20 l~~k~vlITGasg~GIG~~~a~~l~~~G~~V~~~~r~~   57 (266)
T 3o38_A           20 LKGKVVLVTAAAGTGIGSTTARRALLEGADVVISDYHE   57 (266)
T ss_dssp             TTTCEEEESSCSSSSHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCEEEEECCCCCchHHHHHHHHHHCCCEEEEecCCH
Confidence            34457999998 7 499999999999999999998774

>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A*

Probab=90.57  E-value=0.25  Score=47.57  Aligned_cols=35  Identities=26%  Similarity=0.215  Sum_probs=31.8

Q ss_pred             CCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCC
Q psy9141           5 SKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEARE   39 (379)
Q Consensus         5 ~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~   39 (379)
                      ....|+|||.|.+|..+|..|...|.+|+++|+++
T Consensus       219 ~GktV~ViG~G~IGk~vA~~Lra~Ga~Viv~D~dp  253 (435)
T 3gvp_A          219 GGKQVVVCGYGEVGKGCCAALKAMGSIVYVTEIDP  253 (435)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             cCCEEEEEeeCHHHHHHHHHHHHCCCEEEEEeCCh
Confidence            34589999999999999999999999999999765

>3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A*

Probab=90.56  E-value=0.26  Score=44.42  Aligned_cols=39  Identities=15%  Similarity=0.089  Sum_probs=31.1

Q ss_pred             CCCCCCCcEEEECC-Ch--HHHHHHHHHHhCCCcEEEEccCC
Q psy9141           1 MKCNSKKSVVIVGG-GL--VGSLSACMFAKNQYEVNLYEARE   39 (379)
Q Consensus         1 M~~m~~~dVvIVGa-Gp--aGl~~A~~La~~G~~V~viE~~~   39 (379)
                      |..++..-|+|.|| |-  .|.++|..|++.|.+|+++.++.
T Consensus        21 M~~l~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~   62 (280)
T 3nrc_A           21 MGFLAGKKILITGLLSNKSIAYGIAKAMHREGAELAFTYVGQ   62 (280)
T ss_dssp             -CTTTTCEEEECCCCSTTCHHHHHHHHHHHTTCEEEEEECTT
T ss_pred             ccccCCCEEEEECCCCCCCHHHHHHHHHHHcCCEEEEeeCch
Confidence            44444557888886 45  79999999999999999999875

>1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6

Probab=90.49  E-value=0.31  Score=45.50  Aligned_cols=33  Identities=27%  Similarity=0.376  Sum_probs=30.2

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEccCC
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEARE   39 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~   39 (379)
                      ..|.|||+|-.|.+.|..|++.|++|+++++.+
T Consensus        17 ~~I~IIG~G~mG~alA~~L~~~G~~V~~~~~~~   49 (338)
T 1np3_A           17 KKVAIIGYGSQGHAHACNLKDSGVDVTVGLRSG   49 (338)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCEEEECCTT
T ss_pred             CEEEEECchHHHHHHHHHHHHCcCEEEEEECCh
Confidence            369999999999999999999999999998764

>1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6

Probab=90.44  E-value=0.22  Score=48.93  Aligned_cols=32  Identities=25%  Similarity=0.404  Sum_probs=30.0

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEccCC
Q psy9141           8 SVVIVGGGLVGSLSACMFAKNQYEVNLYEARE   39 (379)
Q Consensus         8 dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~   39 (379)
                      +|.|||+|-.|..+|..|++.|++|+++++++
T Consensus         3 kIgVIG~G~mG~~lA~~La~~G~~V~v~dr~~   34 (478)
T 1pgj_A            3 DVGVVGLGVMGANLALNIAEKGFKVAVFNRTY   34 (478)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred             EEEEEChHHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            69999999999999999999999999998764

>2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus thermophilus HB8, structural genomics, NPPSFA; HET: NAD; 1.65A {Thermus thermophilus} SCOP: c.2.1.2

Probab=90.42  E-value=0.37  Score=42.68  Aligned_cols=40  Identities=30%  Similarity=0.385  Sum_probs=32.7

Q ss_pred             CCCCCCCcEEEECC-ChHHHHHHHHHHhCCCcEEEEccCCC
Q psy9141           1 MKCNSKKSVVIVGG-GLVGSLSACMFAKNQYEVNLYEARED   40 (379)
Q Consensus         1 M~~m~~~dVvIVGa-GpaGl~~A~~La~~G~~V~viE~~~~   40 (379)
                      |+.|+...|+|.|| |-.|..+|..|++.|.+|++++++..
T Consensus         1 M~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~   41 (256)
T 2d1y_A            1 MGLFAGKGVLVTGGARGIGRAIAQAFAREGALVALCDLRPE   41 (256)
T ss_dssp             -CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTT
T ss_pred             CCCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChh
Confidence            55565667899985 68899999999999999999998753

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=90.41  E-value=0.31  Score=44.48  Aligned_cols=35  Identities=26%  Similarity=0.235  Sum_probs=31.6

Q ss_pred             CCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCC
Q psy9141           5 SKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEARE   39 (379)
Q Consensus         5 ~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~   39 (379)
                      ....|.|||+|..|..+|..|...|.+|+++++.+
T Consensus       154 ~g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~dr~~  188 (293)
T 3d4o_A          154 HGANVAVLGLGRVGMSVARKFAALGAKVKVGARES  188 (293)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            34579999999999999999999999999999764

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=90.37  E-value=0.27  Score=42.02  Aligned_cols=32  Identities=22%  Similarity=0.167  Sum_probs=29.7

Q ss_pred             cEEEECC-ChHHHHHHHHHHhCCCcEEEEccCC
Q psy9141           8 SVVIVGG-GLVGSLSACMFAKNQYEVNLYEARE   39 (379)
Q Consensus         8 dVvIVGa-GpaGl~~A~~La~~G~~V~viE~~~   39 (379)
                      .|+|.|| |-.|..++..|.+.|++|+++.|++
T Consensus         2 kvlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~   34 (221)
T 3ew7_A            2 KIGIIGATGRAGSRILEEAKNRGHEVTAIVRNA   34 (221)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCS
T ss_pred             eEEEEcCCchhHHHHHHHHHhCCCEEEEEEcCc
Confidence            4999996 9999999999999999999999875

>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A*

Probab=90.36  E-value=0.22  Score=51.55  Aligned_cols=34  Identities=21%  Similarity=0.319  Sum_probs=31.4

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEccCCC
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEARED   40 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~   40 (379)
                      ..|.|||+|..|...|..|++.|++|+++|+++.
T Consensus       315 ~kV~VIGaG~MG~~iA~~la~aG~~V~l~D~~~~  348 (715)
T 1wdk_A          315 KQAAVLGAGIMGGGIAYQSASKGTPILMKDINEH  348 (715)
T ss_dssp             SSEEEECCHHHHHHHHHHHHHTTCCEEEECSSHH
T ss_pred             CEEEEECCChhhHHHHHHHHhCCCEEEEEECCHH
Confidence            3699999999999999999999999999998763

>3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei}

Probab=90.33  E-value=0.25  Score=46.22  Aligned_cols=38  Identities=24%  Similarity=0.329  Sum_probs=32.1

Q ss_pred             CCCCcEEEECC-ChHHHHHHHHHHhC-CCcEEEEccCCCC
Q psy9141           4 NSKKSVVIVGG-GLVGSLSACMFAKN-QYEVNLYEAREDI   41 (379)
Q Consensus         4 m~~~dVvIVGa-GpaGl~~A~~La~~-G~~V~viE~~~~~   41 (379)
                      |+...|+|.|| |..|..++..|.+. |++|+++.|.+..
T Consensus        22 m~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~   61 (372)
T 3slg_A           22 MKAKKVLILGVNGFIGHHLSKRILETTDWEVFGMDMQTDR   61 (372)
T ss_dssp             -CCCEEEEESCSSHHHHHHHHHHHHHSSCEEEEEESCCTT
T ss_pred             cCCCEEEEECCCChHHHHHHHHHHhCCCCEEEEEeCChhh
Confidence            44457999995 99999999999998 9999999987643

>2h7i_A Enoyl-[acyl-carrier-protein] reductase [NADH]; oxidoreductase, INHA, enoyl acyl carrier reductase, pyrrolid carboxamide; HET: NAD 566; 1.62A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1p44_A* 1p45_A* 2b35_A* 2b36_A* 2b37_A* 2aq8_A* 2h7l_A* 2h7m_A* 2h7n_A* 2h7p_A* 2nsd_A* 2pr2_A* 2x22_A* 2x23_A* 3fne_A* 3fnf_A* 3fng_A* 3fnh_A* 3oew_A* 2aqh_A* ...

Probab=90.29  E-value=0.29  Score=43.81  Aligned_cols=37  Identities=11%  Similarity=0.010  Sum_probs=31.6

Q ss_pred             CCCCCcEEEECC---ChHHHHHHHHHHhCCCcEEEEccCC
Q psy9141           3 CNSKKSVVIVGG---GLVGSLSACMFAKNQYEVNLYEARE   39 (379)
Q Consensus         3 ~m~~~dVvIVGa---GpaGl~~A~~La~~G~~V~viE~~~   39 (379)
                      .++...|+|.||   |-.|.++|..|++.|.+|++++++.
T Consensus         4 ~l~~k~vlVTGa~~s~gIG~aia~~l~~~G~~V~~~~r~~   43 (269)
T 2h7i_A            4 LLDGKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDR   43 (269)
T ss_dssp             TTTTCEEEECCCSSTTSHHHHHHHHHHHTTCEEEEEECSC
T ss_pred             ccCCCEEEEECCCCCCchHHHHHHHHHHCCCEEEEEecCh
Confidence            355567999995   7889999999999999999998865

>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*

Probab=90.25  E-value=0.26  Score=48.46  Aligned_cols=34  Identities=29%  Similarity=0.250  Sum_probs=31.1

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCcEEEEccCC
Q psy9141           6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEARE   39 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~   39 (379)
                      ...|+|||+|..|..+|..|...|.+|+++|+++
T Consensus       274 GktV~IiG~G~IG~~~A~~lka~Ga~Viv~d~~~  307 (494)
T 3ce6_A          274 GKKVLICGYGDVGKGCAEAMKGQGARVSVTEIDP  307 (494)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             cCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            4579999999999999999999999999999764

>1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2

Probab=90.23  E-value=0.35  Score=42.21  Aligned_cols=37  Identities=11%  Similarity=0.027  Sum_probs=32.0

Q ss_pred             CCCCCcEEEECC-ChHHHHHHHHHHhCCCcEEEEccCC
Q psy9141           3 CNSKKSVVIVGG-GLVGSLSACMFAKNQYEVNLYEARE   39 (379)
Q Consensus         3 ~m~~~dVvIVGa-GpaGl~~A~~La~~G~~V~viE~~~   39 (379)
                      +|+...|+|.|| |-.|..+|..|++.|.+|++++|++
T Consensus         4 ~~~~~~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~~   41 (244)
T 1cyd_A            4 NFSGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTN   41 (244)
T ss_dssp             CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence            355667999997 8999999999999999999998764

>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A*

Probab=90.22  E-value=0.24  Score=44.76  Aligned_cols=34  Identities=18%  Similarity=0.137  Sum_probs=30.8

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCcEEEEccCC
Q psy9141           6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEARE   39 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~   39 (379)
                      ...|+|+|+|-+|.++|..|++.|.+|+|+.|+.
T Consensus       119 ~~~vlvlGaGg~g~a~a~~L~~~G~~v~v~~R~~  152 (272)
T 1p77_A          119 NQHVLILGAGGATKGVLLPLLQAQQNIVLANRTF  152 (272)
T ss_dssp             TCEEEEECCSHHHHTTHHHHHHTTCEEEEEESSH
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            4579999999999999999999999999998764

>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A*

Probab=90.16  E-value=0.27  Score=45.70  Aligned_cols=36  Identities=25%  Similarity=0.418  Sum_probs=31.0

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHhCCC--cEEEEccCC
Q psy9141           4 NSKKSVVIVGGGLVGSLSACMFAKNQY--EVNLYEARE   39 (379)
Q Consensus         4 m~~~dVvIVGaGpaGl~~A~~La~~G~--~V~viE~~~   39 (379)
                      +++..|+|||||-+|.++|..|+..++  ++.++|.+.
T Consensus         7 ~~~~KI~IiGaG~vG~~la~~l~~~~~~~el~L~Di~~   44 (326)
T 2zqz_A            7 KDHQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIFK   44 (326)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCH
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCCc
Confidence            345689999999999999999998886  799999753

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=90.13  E-value=0.34  Score=44.29  Aligned_cols=35  Identities=23%  Similarity=0.200  Sum_probs=31.6

Q ss_pred             CCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCC
Q psy9141           5 SKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEARE   39 (379)
Q Consensus         5 ~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~   39 (379)
                      ....|.|||+|..|..+|..|...|.+|+++++.+
T Consensus       156 ~g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~d~~~  190 (300)
T 2rir_A          156 HGSQVAVLGLGRTGMTIARTFAALGANVKVGARSS  190 (300)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CCCEEEEEcccHHHHHHHHHHHHCCCEEEEEECCH
Confidence            34579999999999999999999999999999764

>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A

Probab=90.07  E-value=0.24  Score=45.52  Aligned_cols=34  Identities=21%  Similarity=0.405  Sum_probs=29.9

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCC--cEEEEccCCC
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKNQY--EVNLYEARED   40 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~G~--~V~viE~~~~   40 (379)
                      ..|.|||||-.|..+|..|+..|+  +|+++|.+..
T Consensus        15 ~kV~ViGaG~vG~~~a~~l~~~g~~~ev~L~Di~~~   50 (303)
T 2i6t_A           15 NKITVVGGGELGIACTLAISAKGIADRLVLLDLSEG   50 (303)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECCC--
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCcc
Confidence            479999999999999999999998  9999998764

>1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase, oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia coli} SCOP: c.2.1.2 PDB: 1c14_A* 1i2z_A* 1i30_A* 1lx6_A* 1lxc_A* 1mfp_A* 2fhs_A 1qg6_A* 1dfg_A* 1dfh_A* 1d8a_A* 1dfi_A* 3pje_A* 3pjd_A* 3pjf_A*

Probab=90.02  E-value=0.3  Score=43.55  Aligned_cols=36  Identities=14%  Similarity=0.069  Sum_probs=30.8

Q ss_pred             CCCCcEEEECC---ChHHHHHHHHHHhCCCcEEEEccCC
Q psy9141           4 NSKKSVVIVGG---GLVGSLSACMFAKNQYEVNLYEARE   39 (379)
Q Consensus         4 m~~~dVvIVGa---GpaGl~~A~~La~~G~~V~viE~~~   39 (379)
                      ++...|+|.||   |-.|..+|..|++.|.+|++++|++
T Consensus         7 l~~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~   45 (265)
T 1qsg_A            7 LSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQND   45 (265)
T ss_dssp             TTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESST
T ss_pred             cCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEcCcH
Confidence            34456899997   5889999999999999999998875

>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A*

Probab=89.98  E-value=0.37  Score=46.89  Aligned_cols=37  Identities=24%  Similarity=0.423  Sum_probs=33.0

Q ss_pred             CCCcEEEECCChHHHHHHHHHHhCCC-cEEEEccCCCC
Q psy9141           5 SKKSVVIVGGGLVGSLSACMFAKNQY-EVNLYEAREDI   41 (379)
Q Consensus         5 ~~~dVvIVGaGpaGl~~A~~La~~G~-~V~viE~~~~~   41 (379)
                      +.+||+|||||++|+++|+.|++.|+ +|+|+|+.+.+
T Consensus         3 ~~~~~~iiG~G~~g~~~a~~l~~~g~~~v~~~e~~~~~   40 (472)
T 1b37_A            3 VGPRVIVVGAGMSGISAAKRLSEAGITDLLILEATDHI   40 (472)
T ss_dssp             --CCEEEECCBHHHHHHHHHHHHTTCCCEEEECSSSSS
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhcCCCceEEEeCCCCC
Confidence            45799999999999999999999999 89999998754

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*

Probab=89.97  E-value=0.2  Score=51.90  Aligned_cols=33  Identities=24%  Similarity=0.189  Sum_probs=31.1

Q ss_pred             CcEEEEC--CChHHHHHHHHHHhCCCcEEEEccCC
Q psy9141           7 KSVVIVG--GGLVGSLSACMFAKNQYEVNLYEARE   39 (379)
Q Consensus         7 ~dVvIVG--aGpaGl~~A~~La~~G~~V~viE~~~   39 (379)
                      .+|+|||  ||.+|+-+|..|++.|.+|+|+++.+
T Consensus       529 k~VvVIG~GgG~~g~e~A~~l~~~G~~Vtlv~~~~  563 (729)
T 1o94_A          529 KRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVH  563 (729)
T ss_dssp             SEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CeEEEEcCCCCchHHHHHHHHHHcCCEEEEEeccc
Confidence            4799998  99999999999999999999999886

>1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A

Probab=89.94  E-value=0.22  Score=46.39  Aligned_cols=33  Identities=18%  Similarity=0.192  Sum_probs=29.5

Q ss_pred             CCcEEEECC-ChHHHHHHHHHHhCCC-------cEEEEccC
Q psy9141           6 KKSVVIVGG-GLVGSLSACMFAKNQY-------EVNLYEAR   38 (379)
Q Consensus         6 ~~dVvIVGa-GpaGl~~A~~La~~G~-------~V~viE~~   38 (379)
                      +..|+|+|| |-+|..++..|+..|+       +|.++|..
T Consensus         5 ~~KI~ViGaaG~VG~~l~~~L~~~~~~~~~~~~ev~l~Di~   45 (329)
T 1b8p_A            5 PMRVAVTGAAGQICYSLLFRIANGDMLGKDQPVILQLLEIP   45 (329)
T ss_dssp             CEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCS
T ss_pred             CCEEEEECCCChHHHHHHHHHHhCCCcCCCCCCEEEEEcCC
Confidence            458999998 9999999999999886       79999876

>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5}

Probab=89.88  E-value=0.3  Score=43.48  Aligned_cols=39  Identities=21%  Similarity=0.133  Sum_probs=31.5

Q ss_pred             CCCCCCCcEEEECC-ChHHHHHHHHHHhCCCcEEEEccCC
Q psy9141           1 MKCNSKKSVVIVGG-GLVGSLSACMFAKNQYEVNLYEARE   39 (379)
Q Consensus         1 M~~m~~~dVvIVGa-GpaGl~~A~~La~~G~~V~viE~~~   39 (379)
                      |++++..-|+|.|| |-.|..+|..|++.|.+|++++|+.
T Consensus        24 m~~l~~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~   63 (262)
T 3rkr_A           24 MSSLSGQVAVVTGASRGIGAAIARKLGSLGARVVLTARDV   63 (262)
T ss_dssp             -CTTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             hhccCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEECCH
Confidence            44445567888885 7889999999999999999998864

>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2

Probab=89.83  E-value=0.35  Score=43.89  Aligned_cols=32  Identities=25%  Similarity=0.252  Sum_probs=29.9

Q ss_pred             cEEEECC-ChHHHHHHHHHHhCCCcEEEEccCC
Q psy9141           8 SVVIVGG-GLVGSLSACMFAKNQYEVNLYEARE   39 (379)
Q Consensus         8 dVvIVGa-GpaGl~~A~~La~~G~~V~viE~~~   39 (379)
                      .|+|+|| |-.|..++..|.+.|++|+++.|++
T Consensus         6 ~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~   38 (313)
T 1qyd_A            6 RVLIVGGTGYIGKRIVNASISLGHPTYVLFRPE   38 (313)
T ss_dssp             CEEEESTTSTTHHHHHHHHHHTTCCEEEECCSC
T ss_pred             EEEEEcCCcHHHHHHHHHHHhCCCcEEEEECCC
Confidence            6999996 9999999999999999999999875

>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*

Probab=89.83  E-value=0.34  Score=44.80  Aligned_cols=36  Identities=17%  Similarity=0.294  Sum_probs=31.4

Q ss_pred             CCcEEEECC-ChHHHHHHHHHHhCCCcEEEEccCCCC
Q psy9141           6 KKSVVIVGG-GLVGSLSACMFAKNQYEVNLYEAREDI   41 (379)
Q Consensus         6 ~~dVvIVGa-GpaGl~~A~~La~~G~~V~viE~~~~~   41 (379)
                      ...|+|.|| |..|..++..|.+.|++|+++.|.+..
T Consensus        19 ~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~   55 (347)
T 4id9_A           19 SHMILVTGSAGRVGRAVVAALRTQGRTVRGFDLRPSG   55 (347)
T ss_dssp             --CEEEETTTSHHHHHHHHHHHHTTCCEEEEESSCCS
T ss_pred             CCEEEEECCCChHHHHHHHHHHhCCCEEEEEeCCCCC
Confidence            457999998 999999999999999999999988643

>4gsl_A Ubiquitin-like modifier-activating enzyme ATG7; ubiquitin-like protein activation enzyme, ubiquitin-like Pro transfer enzyme, protein transport; 2.70A {Saccharomyces cerevisiae} PDB: 3vh2_A 4gsk_A 3vh1_A

Probab=89.81  E-value=0.32  Score=48.87  Aligned_cols=36  Identities=11%  Similarity=0.245  Sum_probs=32.4

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCC-cEEEEccCCCC
Q psy9141           6 KKSVVIVGGGLVGSLSACMFAKNQY-EVNLYEAREDI   41 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La~~G~-~V~viE~~~~~   41 (379)
                      ...|+|||+|-.|+.+|..|++.|. +++|+|.+...
T Consensus       326 ~arVLIVGaGGLGs~vA~~La~aGVG~ItLvD~D~Ve  362 (615)
T 4gsl_A          326 NTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGTVS  362 (615)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCBCC
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCCCc
Confidence            4689999999999999999999998 79999988643

>3d3w_A L-xylulose reductase; uronate cycle, short-chain dehydrogenase/reductase(SDR) superfamily, glucose metabolism, acetylation, carbohydrate metabolism; HET: NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A*

Probab=89.74  E-value=0.45  Score=41.54  Aligned_cols=36  Identities=11%  Similarity=0.109  Sum_probs=31.2

Q ss_pred             CCCCcEEEECC-ChHHHHHHHHHHhCCCcEEEEccCC
Q psy9141           4 NSKKSVVIVGG-GLVGSLSACMFAKNQYEVNLYEARE   39 (379)
Q Consensus         4 m~~~dVvIVGa-GpaGl~~A~~La~~G~~V~viE~~~   39 (379)
                      ++...|+|.|| |-.|..+|..|++.|.+|+++.|+.
T Consensus         5 l~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~   41 (244)
T 3d3w_A            5 LAGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQ   41 (244)
T ss_dssp             CTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             cCCcEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            44567999997 8999999999999999999998764

>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A*

Probab=89.71  E-value=0.28  Score=44.48  Aligned_cols=36  Identities=14%  Similarity=0.059  Sum_probs=32.0

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCC-cEEEEccCCCC
Q psy9141           6 KKSVVIVGGGLVGSLSACMFAKNQY-EVNLYEAREDI   41 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La~~G~-~V~viE~~~~~   41 (379)
                      ...|+|+|+|-+|.++|..|++.|. +|+|+.|....
T Consensus       117 ~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~~~  153 (277)
T 3don_A          117 DAYILILGAGGASKGIANELYKIVRPTLTVANRTMSR  153 (277)
T ss_dssp             GCCEEEECCSHHHHHHHHHHHTTCCSCCEEECSCGGG
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHH
Confidence            3579999999999999999999999 89999988643

>1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium}

Probab=89.67  E-value=0.21  Score=45.26  Aligned_cols=31  Identities=19%  Similarity=0.270  Sum_probs=29.1

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEccCC
Q psy9141           8 SVVIVGGGLVGSLSACMFAKNQYEVNLYEARE   39 (379)
Q Consensus         8 dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~   39 (379)
                      .|.|||+|-.|...|..|++.|++|++++ ++
T Consensus         5 ~i~iiG~G~~G~~~a~~l~~~g~~V~~~~-~~   35 (295)
T 1yb4_A            5 KLGFIGLGIMGSPMAINLARAGHQLHVTT-IG   35 (295)
T ss_dssp             EEEECCCSTTHHHHHHHHHHTTCEEEECC-SS
T ss_pred             EEEEEccCHHHHHHHHHHHhCCCEEEEEc-CH
Confidence            69999999999999999999999999998 54

>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1

Probab=89.63  E-value=0.28  Score=45.45  Aligned_cols=34  Identities=32%  Similarity=0.453  Sum_probs=30.1

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCC--cEEEEccCC
Q psy9141           6 KKSVVIVGGGLVGSLSACMFAKNQY--EVNLYEARE   39 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La~~G~--~V~viE~~~   39 (379)
                      +..|+|||||-+|.++|..|+..++  ++.++|.+.
T Consensus         5 ~~KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di~~   40 (318)
T 1ez4_A            5 HQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVK   40 (318)
T ss_dssp             BCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             CCEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCCc
Confidence            3589999999999999999999887  899999753

>2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A

Probab=89.61  E-value=0.26  Score=43.88  Aligned_cols=32  Identities=16%  Similarity=0.117  Sum_probs=29.8

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEccCC
Q psy9141           8 SVVIVGGGLVGSLSACMFAKNQYEVNLYEARE   39 (379)
Q Consensus         8 dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~   39 (379)
                      .|.|||+|-.|...|..|++.|++|.++++++
T Consensus         5 ~i~iiG~G~mG~~~a~~l~~~g~~v~~~~~~~   36 (259)
T 2ahr_A            5 KIGIIGVGKMASAIIKGLKQTPHELIISGSSL   36 (259)
T ss_dssp             EEEEECCSHHHHHHHHHHTTSSCEEEEECSSH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCeEEEECCCH
Confidence            79999999999999999999999999998764

>2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix}

Probab=89.52  E-value=0.31  Score=44.87  Aligned_cols=32  Identities=28%  Similarity=0.472  Sum_probs=28.9

Q ss_pred             cEEEECCChHHHHHHHHHHhCCC-cEEEEccCC
Q psy9141           8 SVVIVGGGLVGSLSACMFAKNQY-EVNLYEARE   39 (379)
Q Consensus         8 dVvIVGaGpaGl~~A~~La~~G~-~V~viE~~~   39 (379)
                      .|.|||||.+|..+|..|+..|+ ++.++|.+.
T Consensus         1 KI~IiGaG~vG~~~a~~l~~~~l~el~L~Di~~   33 (308)
T 2d4a_B            1 MITILGAGKVGMATAVMLMMRGYDDLLLIARTP   33 (308)
T ss_dssp             CEEEECCSHHHHHHHHHHHHHTCSCEEEECSST
T ss_pred             CEEEECcCHHHHHHHHHHHhCCCCEEEEEcCCh
Confidence            48999999999999999998888 699999874

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}

Probab=89.46  E-value=0.34  Score=41.62  Aligned_cols=32  Identities=19%  Similarity=0.205  Sum_probs=29.6

Q ss_pred             cEEEECC-ChHHHHHHHHHHhCCCcEEEEccCC
Q psy9141           8 SVVIVGG-GLVGSLSACMFAKNQYEVNLYEARE   39 (379)
Q Consensus         8 dVvIVGa-GpaGl~~A~~La~~G~~V~viE~~~   39 (379)
                      .|+|.|| |-.|..++..|.+.|++|+++.|++
T Consensus         2 kilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~   34 (224)
T 3h2s_A            2 KIAVLGATGRAGSAIVAEARRRGHEVLAVVRDP   34 (224)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEEEcCCCHHHHHHHHHHHHCCCEEEEEEecc
Confidence            4999998 9999999999999999999998864

>2x6t_A ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase, carbohydrate metabolism, stress response; HET: NAP ADP BMA; 2.36A {Escherichia coli} PDB: 2x86_A*

Probab=89.43  E-value=0.38  Score=44.75  Aligned_cols=35  Identities=17%  Similarity=0.427  Sum_probs=30.3

Q ss_pred             CCcEEEECC-ChHHHHHHHHHHhCC-CcEEEEccCCC
Q psy9141           6 KKSVVIVGG-GLVGSLSACMFAKNQ-YEVNLYEARED   40 (379)
Q Consensus         6 ~~dVvIVGa-GpaGl~~A~~La~~G-~~V~viE~~~~   40 (379)
                      ...|+|.|| |..|..++..|.+.| ++|+++.+.+.
T Consensus        46 ~~~vlVtGatG~iG~~l~~~L~~~g~~~V~~~~r~~~   82 (357)
T 2x6t_A           46 GRMIIVTGGAGFIGSNIVKALNDKGITDILVVDNLKD   82 (357)
T ss_dssp             --CEEEETTTSHHHHHHHHHHHHTTCCCEEEEECCSS
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCcEEEEEecCCC
Confidence            357999998 999999999999999 99999988753

>2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A*

Probab=89.42  E-value=0.45  Score=42.55  Aligned_cols=34  Identities=18%  Similarity=0.305  Sum_probs=30.7

Q ss_pred             CCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCC
Q psy9141           5 SKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEARE   39 (379)
Q Consensus         5 ~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~   39 (379)
                      +. .|+|||+|-+|.+.|..|.+.|.+|++++|..
T Consensus       116 ~~-~v~iiG~G~~g~~~a~~l~~~g~~v~v~~r~~  149 (263)
T 2d5c_A          116 KG-PALVLGAGGAGRAVAFALREAGLEVWVWNRTP  149 (263)
T ss_dssp             CS-CEEEECCSHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred             CC-eEEEECCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            34 79999999999999999999999999998764

>2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A*

Probab=89.41  E-value=0.41  Score=43.99  Aligned_cols=34  Identities=29%  Similarity=0.362  Sum_probs=31.0

Q ss_pred             CcEEEECC-ChHHHHHHHHHHhCCCcEEEEccCCC
Q psy9141           7 KSVVIVGG-GLVGSLSACMFAKNQYEVNLYEARED   40 (379)
Q Consensus         7 ~dVvIVGa-GpaGl~~A~~La~~G~~V~viE~~~~   40 (379)
                      ..|+|.|| |-.|..++..|++.|++|+++.|.+.
T Consensus         4 ~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~   38 (345)
T 2z1m_A            4 KRALITGIRGQDGAYLAKLLLEKGYEVYGADRRSG   38 (345)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCCS
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCCEEEEEECCCc
Confidence            46999998 99999999999999999999998764

>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A

Probab=89.39  E-value=0.29  Score=44.25  Aligned_cols=33  Identities=21%  Similarity=0.350  Sum_probs=30.3

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEccCC
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEARE   39 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~   39 (379)
                      ..|+|||+|-+|.+.|..|.+.|.+|++++|++
T Consensus       130 ~~v~iiGaG~~g~aia~~L~~~g~~V~v~~r~~  162 (275)
T 2hk9_A          130 KSILVLGAGGASRAVIYALVKEGAKVFLWNRTK  162 (275)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHTCEEEEECSSH
T ss_pred             CEEEEECchHHHHHHHHHHHHcCCEEEEEECCH
Confidence            479999999999999999999999999998774

>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A

Probab=89.33  E-value=0.45  Score=42.34  Aligned_cols=39  Identities=18%  Similarity=0.079  Sum_probs=32.7

Q ss_pred             CCCCCCCcEEEECCC---hHHHHHHHHHHhCCCcEEEEccCC
Q psy9141           1 MKCNSKKSVVIVGGG---LVGSLSACMFAKNQYEVNLYEARE   39 (379)
Q Consensus         1 M~~m~~~dVvIVGaG---paGl~~A~~La~~G~~V~viE~~~   39 (379)
                      |.+++..-++|-||+   =.|.++|..|++.|.+|++.+|+.
T Consensus         1 M~~l~gK~alVTGaa~~~GIG~aiA~~la~~Ga~Vvi~~r~~   42 (256)
T 4fs3_A            1 MLNLENKTYVIMGIANKRSIAFGVAKVLDQLGAKLVFTYRKE   42 (256)
T ss_dssp             CCCCTTCEEEEECCCSTTCHHHHHHHHHHHTTCEEEEEESSG
T ss_pred             CcCCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEECCH
Confidence            666677778999963   359999999999999999999875

>4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens}

Probab=89.30  E-value=0.39  Score=43.43  Aligned_cols=33  Identities=24%  Similarity=0.468  Sum_probs=30.4

Q ss_pred             cEEEECC-ChHHHHHHHHHHhCCCcEEEEccCCC
Q psy9141           8 SVVIVGG-GLVGSLSACMFAKNQYEVNLYEARED   40 (379)
Q Consensus         8 dVvIVGa-GpaGl~~A~~La~~G~~V~viE~~~~   40 (379)
                      +|+|.|| |..|..++..|.++|++|+++-|++.
T Consensus         2 kILVTGatGfIG~~L~~~L~~~G~~V~~l~R~~~   35 (298)
T 4b4o_A            2 RVLVGGGTGFIGTALTQLLNARGHEVTLVSRKPG   35 (298)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCC
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCC
Confidence            4999998 99999999999999999999988753

>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A

Probab=89.30  E-value=0.47  Score=43.11  Aligned_cols=35  Identities=26%  Similarity=0.324  Sum_probs=30.8

Q ss_pred             CCCcEEEECCChHHHHHHHHHHhCCC-cEEEEccCC
Q psy9141           5 SKKSVVIVGGGLVGSLSACMFAKNQY-EVNLYEARE   39 (379)
Q Consensus         5 ~~~dVvIVGaGpaGl~~A~~La~~G~-~V~viE~~~   39 (379)
                      +...|+|+|+|-+|.++|..|++.|. +|+|+.|+.
T Consensus       126 ~~k~vlVlGaGG~g~aia~~L~~~G~~~v~i~~R~~  161 (283)
T 3jyo_A          126 KLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDT  161 (283)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSH
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEECCH
Confidence            34579999999999999999999999 699998764

>3vh1_A Ubiquitin-like modifier-activating enzyme ATG7; autophagy, zinc binding, metal binding protein; 3.00A {Saccharomyces cerevisiae} PDB: 3vh2_A

Probab=89.15  E-value=0.36  Score=48.39  Aligned_cols=36  Identities=11%  Similarity=0.245  Sum_probs=32.1

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCC-cEEEEccCCCC
Q psy9141           6 KKSVVIVGGGLVGSLSACMFAKNQY-EVNLYEAREDI   41 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La~~G~-~V~viE~~~~~   41 (379)
                      ...|+|||+|-.|+.+|..|++.|. +++|+|.+...
T Consensus       327 ~~kVLIVGaGGLGs~va~~La~aGVG~ItLvD~D~Ve  363 (598)
T 3vh1_A          327 NTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGTVS  363 (598)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTTTCCEEEEECCSBCC
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCCEEEEECCCccc
Confidence            4689999999999999999999998 79999977643

>1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6

Probab=89.12  E-value=0.32  Score=43.34  Aligned_cols=30  Identities=23%  Similarity=0.104  Sum_probs=27.7

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEcc
Q psy9141           8 SVVIVGGGLVGSLSACMFAKNQYEVNLYEA   37 (379)
Q Consensus         8 dVvIVGaGpaGl~~A~~La~~G~~V~viE~   37 (379)
                      .|.|||+|-.|..+|..|++.|++|+++++
T Consensus         2 ~I~iIG~G~mG~~la~~l~~~g~~V~~~~~   31 (264)
T 1i36_A            2 RVGFIGFGEVAQTLASRLRSRGVEVVTSLE   31 (264)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCEEEECCT
T ss_pred             eEEEEechHHHHHHHHHHHHCCCeEEEeCC
Confidence            599999999999999999999999999755

>2ag5_A DHRS6, dehydrogenase/reductase (SDR family) member 6; protein-CO-factor complex, structural genomics, structural G consortium, SGC, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: c.2.1.2

Probab=89.05  E-value=0.4  Score=42.15  Aligned_cols=39  Identities=21%  Similarity=0.245  Sum_probs=32.6

Q ss_pred             CCCCCCCcEEEECC-ChHHHHHHHHHHhCCCcEEEEccCC
Q psy9141           1 MKCNSKKSVVIVGG-GLVGSLSACMFAKNQYEVNLYEARE   39 (379)
Q Consensus         1 M~~m~~~dVvIVGa-GpaGl~~A~~La~~G~~V~viE~~~   39 (379)
                      |.+++...|+|.|| |-.|..+|..|++.|.+|++++|++
T Consensus         1 m~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~   40 (246)
T 2ag5_A            1 MGRLDGKVIILTAAAQGIGQAAALAFAREGAKVIATDINE   40 (246)
T ss_dssp             CCTTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            55555567888886 7889999999999999999998864

>3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima}

Probab=89.03  E-value=0.46  Score=42.42  Aligned_cols=33  Identities=15%  Similarity=0.206  Sum_probs=30.6

Q ss_pred             cEEEECCChHHHHHHHHHHhCCC-cEEEEccCCC
Q psy9141           8 SVVIVGGGLVGSLSACMFAKNQY-EVNLYEARED   40 (379)
Q Consensus         8 dVvIVGaGpaGl~~A~~La~~G~-~V~viE~~~~   40 (379)
                      .|+|||+|-+|-+++..|.+.|. +|+|++|...
T Consensus       110 ~vliiGaGg~a~ai~~~L~~~G~~~I~v~nR~~~  143 (253)
T 3u62_A          110 PVVVVGAGGAARAVIYALLQMGVKDIWVVNRTIE  143 (253)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCCEEEEESCHH
T ss_pred             eEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHH
Confidence            79999999999999999999998 8999998753

>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*

Probab=88.96  E-value=0.52  Score=41.88  Aligned_cols=39  Identities=15%  Similarity=0.099  Sum_probs=31.9

Q ss_pred             CC-CCCCCcEEEECC-Ch--HHHHHHHHHHhCCCcEEEEccCC
Q psy9141           1 MK-CNSKKSVVIVGG-GL--VGSLSACMFAKNQYEVNLYEARE   39 (379)
Q Consensus         1 M~-~m~~~dVvIVGa-Gp--aGl~~A~~La~~G~~V~viE~~~   39 (379)
                      |+ +++..-|+|.|| |-  .|.++|..|++.|.+|+++.+..
T Consensus         1 M~~~l~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~   43 (266)
T 3oig_A            1 MNFSLEGRNIVVMGVANKRSIAWGIARSLHEAGARLIFTYAGE   43 (266)
T ss_dssp             CCSCCTTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSG
T ss_pred             CccccCCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEecCch
Confidence            44 355567999997 45  79999999999999999998764

>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1

Probab=88.95  E-value=0.49  Score=44.64  Aligned_cols=34  Identities=12%  Similarity=0.083  Sum_probs=30.6

Q ss_pred             CCCcEEEECCChHHHHHHHHHHhCCCcEEEEccC
Q psy9141           5 SKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAR   38 (379)
Q Consensus         5 ~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~   38 (379)
                      ....|+|+|+|-+|..+|..|.+.|.+|++.|++
T Consensus       172 ~GktV~V~G~G~VG~~~A~~L~~~GakVvv~D~~  205 (364)
T 1leh_A          172 EGLAVSVQGLGNVAKALCKKLNTEGAKLVVTDVN  205 (364)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             CcCEEEEECchHHHHHHHHHHHHCCCEEEEEcCC
Confidence            4567999999999999999999999999998853

>1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5

Probab=88.87  E-value=0.35  Score=43.93  Aligned_cols=33  Identities=24%  Similarity=0.321  Sum_probs=29.5

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCcEEEEccCC
Q psy9141           6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEARE   39 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~   39 (379)
                      ...|+|+|+|-+|.++|..|++.| +|++++|+.
T Consensus       128 ~k~vlV~GaGgiG~aia~~L~~~G-~V~v~~r~~  160 (287)
T 1nvt_A          128 DKNIVIYGAGGAARAVAFELAKDN-NIIIANRTV  160 (287)
T ss_dssp             SCEEEEECCSHHHHHHHHHHTSSS-EEEEECSSH
T ss_pred             CCEEEEECchHHHHHHHHHHHHCC-CEEEEECCH
Confidence            457999999999999999999999 999998763

>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*

Probab=88.86  E-value=0.5  Score=43.68  Aligned_cols=34  Identities=18%  Similarity=0.334  Sum_probs=30.7

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCC-cEEEEccCC
Q psy9141           6 KKSVVIVGGGLVGSLSACMFAKNQY-EVNLYEARE   39 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La~~G~-~V~viE~~~   39 (379)
                      ...++|+|+|-+|.++|..|++.|. +|+|+.|.+
T Consensus       154 gk~~lVlGaGG~g~aia~~L~~~Ga~~V~i~nR~~  188 (315)
T 3tnl_A          154 GKKMTICGAGGAATAICIQAALDGVKEISIFNRKD  188 (315)
T ss_dssp             TSEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSS
T ss_pred             CCEEEEECCChHHHHHHHHHHHCCCCEEEEEECCC
Confidence            4579999999999999999999998 899998873

>1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A*

Probab=88.83  E-value=0.42  Score=44.23  Aligned_cols=35  Identities=17%  Similarity=0.289  Sum_probs=30.9

Q ss_pred             CCCcEEEECCC-hHHHHHHHHHHhCCCcEEEEccCC
Q psy9141           5 SKKSVVIVGGG-LVGSLSACMFAKNQYEVNLYEARE   39 (379)
Q Consensus         5 ~~~dVvIVGaG-paGl~~A~~La~~G~~V~viE~~~   39 (379)
                      ...+|+|||+| .+|..+|..|.+.|.+|++++|+.
T Consensus       176 ~gk~vvVIG~G~iVG~~~A~~L~~~gAtVtv~nR~~  211 (320)
T 1edz_A          176 YGKKCIVINRSEIVGRPLAALLANDGATVYSVDVNN  211 (320)
T ss_dssp             TTCEEEEECCCTTTHHHHHHHHHTTSCEEEEECSSE
T ss_pred             CCCEEEEECCCcchHHHHHHHHHHCCCEEEEEeCch
Confidence            34689999999 689999999999999999998763

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	379
d1k0ia1	292	c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydr	1e-19
d3c96a1	288	c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Ps	8e-17
d1pn0a1	360	c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {So	2e-14
d2voua1	265	c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydr	3e-13
d2iida1	370	c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {M	5e-05
d2ivda1	347	c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen ox	8e-05
d1c0pa1	268	c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxida	2e-04
d2i0za1	251	c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {B	3e-04
d2dw4a2	449	c.3.1.2 (A:274-654,A:764-831) Lysine-specific hist	4e-04
d2v5za1	383	c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {H	6e-04
d1seza1	373	c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen ox	6e-04
d2gf3a1	281	c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bac	9e-04
d2bi7a1	314	c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mu	0.001
d1bg6a2	184	c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvalin	0.001
d2gqfa1	253	c.3.1.8 (A:1-194,A:343-401) Hypothetical protein H	0.001
d1d5ta1	336	c.3.1.3 (A:-2-291,A:389-431) Guanine nucleotide di	0.002
d1q1ra1	185	c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductas	0.002

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]} Length = 292

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 86.2 bits (212), Expect = 1e-19
 Identities = 30/197 (15%), Positives = 56/197 (28%), Gaps = 22/197 (11%)

Query: 6   KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALR 65
           K  V I+G G  G L   +  K   +  + E +          G+     L     + LR
Sbjct: 2   KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQTPDY----VLGRIRAGVLEQGMVDLLR 57

Query: 66  RIGLEDKLLAHGIPMRARMIHGQNGKLREIPYDPVHNQV---------------ELEQYP 110
             G++ ++   G+      I     + R         +                  E   
Sbjct: 58  EAGVDRRMARDGLVHEGVEIAFAGQRRRIDLKRLSGGKTVTVYGQTEVTRDLMEAREACG 117

Query: 111 DCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAYSGVRKCLMKQSMFN 170
              +Y   ++   D+           D    ++     I G DG +   R+ +  + M +
Sbjct: 118 ATTVYQAAEVRLHDLQGERPYVTFERDGERLRLD-CDYIAGCDGFHGISRQSIPAERMQH 176

Query: 171 YSQTYIEHGYMELCIPP 187
                   G     +PP
Sbjct: 177 --GRLFLAGDAAHIVPP 191

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]} Length = 288

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 77.8 bits (190), Expect = 8e-17
 Identities = 36/200 (18%), Positives = 65/200 (32%), Gaps = 27/200 (13%)

Query: 9   VVIVGGGLVGSLSACMFAKNQY-EVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRI 67
           ++I G G+ G   A    +    +V L E+  +IR  G+       + +     EAL  +
Sbjct: 4   ILIAGAGIGGLSCALALHQAGIGKVTLLESSSEIRPLGVG------INIQPAAVEALAEL 57

Query: 68  GLEDKLLAHGIPMRARMIHGQNGK-------------------LREIPYDPVHNQVELEQ 108
           GL   L A  IP        Q+G                    +       +      E+
Sbjct: 58  GLGPALAATAIPTHELRYIDQSGATVWSEPRGVEAGNAYPQYSIHRGELQMILLAAVRER 117

Query: 109 YPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAYSGVRKCLMK-QS 167
                +     +  ++   G V     + + + +     +++GADG +S VR  L   Q 
Sbjct: 118 LGQQAVRTGLGVERIEERDGRVLIGARDGHGKPQALGADVLVGADGIHSAVRAHLHPDQR 177

Query: 168 MFNYSQTYIEHGYMELCIPP 187
                  +   G + L    
Sbjct: 178 PLRDPLPHWGRGRITLLGDA 197

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]} Length = 360

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

 Score = 71.7 bits (174), Expect = 2e-14
 Identities = 34/216 (15%), Positives = 70/216 (32%), Gaps = 20/216 (9%)

Query: 9   VVIVGGGLVGSLSACMFAKNQ-----YEVNLYEAREDIRNSGLSEGKSINLALSVRGREA 63
           V+IVG G  G ++A + ++        +V + + R     +G +        L  R  E+
Sbjct: 10  VLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTKVYNGQA------DGLQCRTLES 63

Query: 64  LRRIGLEDKLLAHGIPMRARMIHGQNGKLREIPYDPVHNQVELEQYPDCNIYFQHKLINL 123
           L+ +GL DK+L+    M    ++  +        D + + +         +  Q ++   
Sbjct: 64  LKNLGLADKILSEANDMSTIALYNPDENGHIRRTDRIPDTLPGISRYHQVVLHQGRIERR 123

Query: 124 ---DVNSGNVTFYRTEDNSETKITDNQLIIGADGAYSGVRKCLMKQS------MFNYSQT 174
               +   + T  + E     +  +       D     V   L   S      +    +T
Sbjct: 124 ILDSIAEISDTRIKVERPLIPEKMEIDSSKAEDPEAYPVTMTLRYMSEDESTPLQFGHKT 183

Query: 175 YIEHGYMELCIPPSEDNEVWLYKNRLLSSVPEVRKR 210
                   L     ED    L + +    +  V  +
Sbjct: 184 ENGLFRSNLQTQEEEDANYRLPEGKEAGEIETVHCK 219

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]} Length = 265

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

 Score = 67.1 bits (162), Expect = 3e-13
 Identities = 33/192 (17%), Positives = 64/192 (33%), Gaps = 15/192 (7%)

Query: 5   SKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREAL 64
           +   + +VGG + G  +A M      +V++YE      +     G    + +       L
Sbjct: 3   TTDRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQPLS-----GFGTGIVVQPELVHYL 57

Query: 65  RRIGLEDKLLAHGIPMRARMIHGQNGKLREIPYDPVHNQVE------LEQYPDCNIYFQH 118
              G+E   ++        +      ++  +P D      +       E +     +   
Sbjct: 58  LEQGVELDSISVPSSSMEYVDALTGERVGSVPADWRFTSYDSIYGGLYELFGPERYHTSK 117

Query: 119 KLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAYSGVRKCLMKQSMFNYSQTYIEH 178
            L+ L  +S  V   R  D ++ +      +IGADG  S VRK L+     +        
Sbjct: 118 CLVGLSQDSETVQM-RFSDGTKAE---ANWVIGADGGASVVRKRLLGIETVDRMVHGRVL 173

Query: 179 GYMELCIPPSED 190
              +  + P   
Sbjct: 174 LIGDAAVTPRPH 185

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} Length = 370

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

 Score = 42.4 bits (98), Expect = 5e-05
 Identities = 24/107 (22%), Positives = 38/107 (35%), Gaps = 11/107 (10%)

Query: 4   NSKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDI-----------RNSGLSEGKSI 52
           ++ K VVIVG G+ G  +A + A   ++V + EA E                  + G   
Sbjct: 28  SNPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASERPGGRVRTYRNEEAGWYANLGPMR 87

Query: 53  NLALSVRGREALRRIGLEDKLLAHGIPMRARMIHGQNGKLREIPYDP 99
                   RE +R+  L     +         I     K+ E+  DP
Sbjct: 88  LPEKHRIVREYIRKFDLRLNEFSQENDNAWYFIKNIRKKVGEVKKDP 134

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} Length = 347

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

 Score = 41.7 bits (96), Expect = 8e-05
 Identities = 18/134 (13%), Positives = 38/134 (28%), Gaps = 9/134 (6%)

Query: 9   VVIVGGGLVGSLSACMFAKNQYEVNLYEAREDI-------RNSG--LSEGKSINLALSVR 59
           V +VGGG+ G   A        +  L E+   +         +G  + +G +  L     
Sbjct: 3   VAVVGGGISGLAVAHHLRSRGTDAVLLESSARLGGAVGTHALAGYLVEQGPNSFLDREPA 62

Query: 60  GREALRRIGLEDKLLAHGIPMRARMIHGQNGKLREIPYDPVHNQVELEQYPDCNIYFQHK 119
            R     + LE ++ A     + R ++ +          P     ++             
Sbjct: 63  TRALAAALNLEGRIRAADPAAKRRYVYTRGRLRSVPASPPAFLASDILPLGARLRVAGEL 122

Query: 120 LINLDVNSGNVTFY 133
                    + +  
Sbjct: 123 FSRRAPEGVDESLA 136

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]} Length = 268

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

 Score = 40.0 bits (92), Expect = 2e-04
 Identities = 12/39 (30%), Positives = 23/39 (58%)

Query: 1  MKCNSKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEARE 39
          +  +S+K VV++G G++G  SA + A+  Y V++     
Sbjct: 1  LMMHSQKRVVVLGSGVIGLSSALILARKGYSVHILARDL 39

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]} Length = 251

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

 Score = 39.6 bits (91), Expect = 3e-04
 Identities = 14/136 (10%), Positives = 34/136 (25%), Gaps = 4/136 (2%)

Query: 1   MKCNSKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRG 60
           M  +    V+++GGG  G ++A   A+    V L +    +       G       +   
Sbjct: 1   MHYD----VIVIGGGPSGLMAAIGAAEEGANVLLLDKGNKLGRKLAISGGGRCNVTNRLP 56

Query: 61  REALRRIGLEDKLLAHGIPMRARMIHGQNGKLREIPYDPVHNQVELEQYPDCNIYFQHKL 120
            + + +    +    +                         +   +    +        L
Sbjct: 57  LDEIVKHIPGNGRFLYSAFSIFNNEDIITFFENLGVKLKEEDHGRMFPVSNKAQSVVDAL 116

Query: 121 INLDVNSGNVTFYRTE 136
           +    + G      T 
Sbjct: 117 LTRLKDLGVKIRTNTP 132

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]} Length = 449

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.9 bits (91), Expect = 4e-04
 Identities = 11/36 (30%), Positives = 18/36 (50%)

Query: 6  KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDI 41
             V+I+G G+ G  +A        +V L EAR+ +
Sbjct: 5  TGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRV 40

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]} Length = 383

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.3 bits (90), Expect = 6e-04
 Identities = 30/215 (13%), Positives = 57/215 (26%), Gaps = 19/215 (8%)

Query: 9   VVIVGGGLVGSLSACMFAKNQYEVNLYEAREDI----RNSGLSEGKSINLALSVRG---- 60
           VV+VGGG+ G  +A +   +   V + EAR+ +          + K ++L  S  G    
Sbjct: 2   VVVVGGGISGMAAAKLLHDSGLNVVVLEARDRVGGRTYTLRNQKVKYVDLGGSYVGPTQN 61

Query: 61  --REALRRIGLEDKLLAHGIPMRARMIHGQNGKLREIPYDPVHNQVELEQYP-------D 111
                 + +GLE          R              P+ PV N +    +        D
Sbjct: 62  RILRLAKELGLE--TYKVNEVERLIHHVKGKSYPFRGPFPPVWNPITYLDHNNFWRTMDD 119

Query: 112 CNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAYSGVRKCLMKQSMFNY 171
                          +        ++  +           A    +        +    +
Sbjct: 120 MGREIPSDAPWKAPLAEEWDNMTMKELLDKLCWTESAKQLATLFVNLCVTAETHEVSALW 179

Query: 172 SQTYIEHGYMELCIPPSEDNEVWLYKNRLLSSVPE 206
              Y++       I  + +             V E
Sbjct: 180 FLWYVKQCGGTTRIISTTNGGQERKFVGGSGQVSE 214

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 373

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

 Score = 39.0 bits (89), Expect = 6e-04
 Identities = 9/35 (25%), Positives = 16/35 (45%)

Query: 7  KSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDI 41
          K V ++G G+ G  +A     +   V ++EA    
Sbjct: 2  KRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGKA 36

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]} Length = 281

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

 Score = 38.5 bits (88), Expect = 9e-04
 Identities = 22/119 (18%), Positives = 40/119 (33%), Gaps = 1/119 (0%)

Query: 9   VVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSV-RGREALRRI 67
           V++VG G +G  +    AK   +  L +A +    +G   G +  +  +   GRE +   
Sbjct: 6   VIVVGAGSMGMAAGYQLAKQGVKTLLVDAFDPPHTNGSHHGDTRIIRHAYGEGREYVPLA 65

Query: 68  GLEDKLLAHGIPMRARMIHGQNGKLREIPYDPVHNQVELEQYPDCNIYFQHKLINLDVN 126
               +L           I  + G L   P        E  +    +      L   ++N
Sbjct: 66  LRSQELWYELEKETHHKIFTKTGVLVFGPKGESAFVAETMEAAKEHSLTVDLLEGDEIN 124

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]} Length = 314

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

 Score = 38.2 bits (88), Expect = 0.001
 Identities = 10/36 (27%), Positives = 21/36 (58%)

Query: 6  KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDI 41
           K ++IVG G  G++     A+  ++V++ + R+ I
Sbjct: 2  SKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHI 37

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} Length = 184

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

 Score = 37.6 bits (86), Expect = 0.001
 Identities = 9/46 (19%), Positives = 14/46 (30%)

Query: 7  KSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSI 52
          K+  ++G G  G   A   A     V  ++            G  I
Sbjct: 2  KTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRGAII 47

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]} Length = 253

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

 Score = 37.6 bits (86), Expect = 0.001
 Identities = 22/163 (13%), Positives = 41/163 (25%), Gaps = 15/163 (9%)

Query: 9   VVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIG 68
            +I+G G  G   A   AK    V +++  + I    L  G       ++    A     
Sbjct: 7   NIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKIGRKILMSGGGFCNFTNLEVTPAHYLSQ 66

Query: 69  LEDKL--------------LAHGIPMRARMIHGQNGKLREIPYDPVHNQVELEQYPDCNI 114
               +              L     +             E     V             I
Sbjct: 67  NPHFVKSALARYTNWDFISLVAEQGITYHEKELGQLFCDEGAEQIVEMLKSECDKYGAKI 126

Query: 115 YFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAYS 157
             + ++  ++    +         + T+     LI+ A G  S
Sbjct: 127 LLRSEVSQVERIQNDEKVRFVLQVNSTQWQCKNLIV-ATGGLS 168

>d1d5ta1 c.3.1.3 (A:-2-291,A:389-431) Guanine nucleotide dissociation inhibitor, GDI {Cow (Bos taurus) [TaxId: 9913]} Length = 336

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 37.5 bits (85), Expect = 0.002
 Identities = 6/33 (18%), Positives = 15/33 (45%)

Query: 9  VVIVGGGLVGSLSACMFAKNQYEVNLYEAREDI 41
          V+++G GL   + + + + N  +V   +     
Sbjct: 9  VIVLGTGLTECILSGIMSVNGKKVLHMDRNPYY 41

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} Length = 185

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

 Score = 36.3 bits (82), Expect = 0.002
 Identities = 12/38 (31%), Positives = 18/38 (47%)

Query: 4  NSKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDI 41
          N+  +VVIVG GL G   A     + +E N+    +  
Sbjct: 1  NANDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDAT 38

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	379
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	99.92
d1pn0a1	360	Phenol hydroxylase {Soil-living yeast (Trichosporo	99.91
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	99.87
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	99.79
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	99.57
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	99.52
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	99.51
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	99.44
d1y0pa2	308	Flavocytochrome c3 (respiratory fumarate reductase	99.44
d2gmha1	380	Electron transfer flavoprotein-ubiquinone oxidored	99.43
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	99.37
d1d4ca2	322	Flavocytochrome c3 (respiratory fumarate reductase	99.34
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	99.34
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	99.34
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	99.32
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	99.28
d1qo8a2	317	Flavocytochrome c3 (respiratory fumarate reductase	99.26
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	99.23
d2bs2a2	336	Fumarate reductase {Wolinella succinogenes [TaxId:	99.2
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	99.2
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	99.2
d1kf6a2	311	Fumarate reductase {Escherichia coli [TaxId: 562]}	99.15
d1chua2	305	L-aspartate oxidase {Escherichia coli [TaxId: 562]	99.11
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	99.05
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	99.04
d1neka2	330	Succinate dehydogenase {Escherichia coli [TaxId: 5	99.02
d2cula1	230	GidA-related protein TTHA1897 {Thermus thermophilu	98.98
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	98.98
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	98.96
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	98.95
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	98.94
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	98.93
d1rp0a1	278	Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara	98.9
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	98.88
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	98.86
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	98.85
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	98.81
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	98.8
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	98.78
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	98.75
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	98.74
d1jnra2	356	Adenylylsulfate reductase A subunit {Archaeon Arch	98.73
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	98.72
d3lada1	229	Dihydrolipoamide dehydrogenase {Azotobacter vinela	98.7
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	98.68
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	98.68
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	98.67
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	98.65
d1m6ia1	213	Apoptosis-inducing factor (AIF) {Human (Homo sapie	98.65
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	98.62
d1ojta1	229	Dihydrolipoamide dehydrogenase {Neisseria meningit	98.59
d1v59a1	233	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	98.58
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	98.58
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	98.58
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	98.57
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	98.54
d1h6va1	235	Mammalian thioredoxin reductase {Rat (Rattus norve	98.52
d1fl2a1	184	Alkyl hydroperoxide reductase subunit F (AhpF), C-	98.51
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	98.51
d1ebda1	223	Dihydrolipoamide dehydrogenase {Bacillus stearothe	98.48
d3grsa1	221	Glutathione reductase {Human (Homo sapiens) [TaxId	98.47
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	98.46
d1gpea1	391	Glucose oxidase {Penicillium amagasakiense [TaxId:	98.43
d1cf3a1	385	Glucose oxidase {Aspergillus niger [TaxId: 5061]}	98.42
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	98.39
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	98.39
d1lvla1	220	Dihydrolipoamide dehydrogenase {Pseudomonas putida	98.36
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	98.35
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	98.34
d2f5va1	379	Pyranose 2-oxidase {White-rot fungus (Peniophora s	98.32
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	98.31
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	98.29
d1d7ya1	183	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	98.27
d1onfa1	259	Glutathione reductase {Plasmodium falciparum [TaxI	98.27
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	98.24
d1aoga1	238	Trypanothione reductase {Trypanosoma cruzi [TaxId:	98.22
d1feca1	240	Trypanothione reductase {Crithidia fasciculata [Ta	98.21
d1xdia1	233	Dihydrolipoamide dehydrogenase {Mycobacterium tube	98.2
d2gjca1	311	Thiazole biosynthetic enzyme Thi4 {Baker's yeast (	98.18
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	98.17
d3coxa1	370	Cholesterol oxidase of GMC family {Brevibacterium	98.15
d1mo9a1	261	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	98.13
d1kdga1	360	Flavoprotein domain of flavocytochrome cellobiose	98.03
d1n4wa1	367	Cholesterol oxidase of GMC family {Streptomyces sp	97.99
d1kifa1	246	D-aminoacid oxidase, N-terminal domain {Pig (Sus s	97.84
d1ju2a1	351	Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxI	97.7
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	97.6
d1ps9a2	162	2,4-dienoyl-CoA reductase, C-terminal domain {Esch	97.49
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	97.48
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	97.43
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	97.22
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	97.18
d1fl2a2	126	Alkyl hydroperoxide reductase subunit F (AhpF), C-	97.06
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	97.05
d1gtea3	153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	97.01
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	96.88
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	96.84
d1vdca2	130	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	96.77
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	96.58
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	96.47
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	96.45
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	96.43
d1trba2	126	Thioredoxin reductase {Escherichia coli [TaxId: 56	96.37
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	96.36
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	96.35
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	96.05
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	96.02
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	95.95
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	95.95
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	95.71
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	95.59
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	95.57
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	95.51
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	95.42
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	95.31
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	95.12
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	95.11
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	95.1
d1vg0a1	491	Rab escort protein 1 {Rat (Rattus norvegicus) [Tax	94.87
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	94.85
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	94.79
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	94.76
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	94.7
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	94.66
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	94.65
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	94.56
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	94.48
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	94.46
d1uxja1	142	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	94.46
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	94.32
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	94.31
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	94.19
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	94.19
d1hyea1	145	MJ0490, lactate/malate dehydrogenase {Archaeon Met	94.15
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	94.12
d1cjca1	225	Adrenodoxin reductase of mitochondrial p450 system	94.09
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	93.88
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	93.88
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	93.83
d1ojua1	142	Malate dehydrogenase {Archaeon Archaeoglobus fulgi	93.78
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	93.7
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	93.7
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	93.67
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	93.62
d2gv8a2	107	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	93.45
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	93.15
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	93.13
d1lqta1	216	Ferredoxin:NADP reductase FprA {Mycobacterium tube	93.12
d1a5za1	140	Lactate dehydrogenase {Thermotoga maritima [TaxId:	93.12
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	93.03
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	92.98
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	92.71
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	92.51
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	92.46
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	92.11
d1a9xa3	127	Carbamoyl phosphate synthetase (CPS), large subuni	91.77
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	91.43
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	91.39
d1o6za1	142	Malate dehydrogenase {Archaeon Haloarcula marismor	91.28
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	91.12
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	90.8
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	90.7
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	90.28
d1v8ba1	163	S-adenosylhomocystein hydrolase {Plasmodium falcip	90.27
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	89.72
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	89.41
d2cmda1	145	Malate dehydrogenase {Escherichia coli [TaxId: 562	89.39
d2ahra2	152	Pyrroline-5-carboxylate reductase ProC {Streptococ	89.33
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	89.29
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	89.25
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	89.21
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	88.86
d2c5aa1	363	GDP-mannose-3', 5'-epimerase {Thale cress (Arabido	88.75
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	88.56
d1y7ta1	154	Malate dehydrogenase {Thermus thermophilus [TaxId:	88.05
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	87.72
d1a9xa4	121	Carbamoyl phosphate synthetase (CPS), large subuni	87.43
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	86.63
d5mdha1	154	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	86.29
d1vl0a_	281	DTDP-4-dehydrorhamnose reductase RfbD {Clostridium	85.86
d2dt5a2	126	Transcriptional repressor Rex, C-terminal domain {	85.36
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	85.34
d1d7oa_	297	Enoyl-ACP reductase {Oil seed rape (Brassica napus	84.81
d1ulua_	256	Enoyl-ACP reductase {Thermus thermophilus [TaxId:	84.22
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	84.22
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	84.19
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	83.82
d1yovb1	426	UBA3 {Human (Homo sapiens) [TaxId: 9606]}	83.69
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	83.48
d1xgka_	350	Negative transcriptional regulator NmrA {Aspergill	83.2
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	82.82
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	82.15
d1vl6a1	222	Malate oxidoreductase (malic enzyme) {Thermotoga m	82.05
d1pn0a3	101	Phenol hydroxylase {Soil-living yeast (Trichosporo	82.01
d1w4xa2	235	Phenylacetone monooxygenase {Thermobifida fusca [T	81.66
d7mdha1	175	Malate dehydrogenase {Sorghum (Sorghum vulgare), c	81.1
d1fjha_	257	3-alpha-hydroxysteroid dehydrogenase {Comamonas te	80.37
d1ulsa_	242	beta-keto acyl carrier protein reductase {Thermus	80.34

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.92  E-value=1.4e-24  Score=198.22  Aligned_cols=149  Identities=24%  Similarity=0.299  Sum_probs=118.5

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCC-cEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeEE
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKNQY-EVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARMI   85 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~G~-~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~~   85 (379)
                      +||+||||||+||++|+.|++.|+ +|+|+||.+.+...    ++++  .++++++++|+++|+++.+...+........
T Consensus         2 ~~V~IvGaG~aGl~~A~~L~~~Gi~~V~V~Er~~~~~~~----g~~i--~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~   75 (288)
T d3c96a1           2 IDILIAGAGIGGLSCALALHQAGIGKVTLLESSSEIRPL----GVGI--NIQPAAVEALAELGLGPALAATAIPTHELRY   75 (288)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSSCCCC----SCEE--EECHHHHHHHHHTTCHHHHHHHSEEECEEEE
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCeEEEEeCCCCCCCC----ceEE--EECHHHHHHHHHcCchhhhHhhhccccccee
Confidence            699999999999999999999996 89999999877544    7776  6899999999999999999888777777777


Q ss_pred             EecCCcEEE-eeCCCC-----C----cH---------HHHhcCCCCeEEeCceEEEEEecCCeEEEEEccCC--ceeEEE
Q psy9141          86 HGQNGKLRE-IPYDPV-----H----NQ---------VELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDN--SETKIT  144 (379)
Q Consensus        86 ~~~~g~~~~-~~~~~~-----~----~~---------~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G--~~~~~i  144 (379)
                      ++.++.... .+....     .    ..         .......++.+.++++++.++.+++++++.+. +|  +..+ +
T Consensus        76 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~v~v~~~-~g~~~~~~-~  153 (288)
T d3c96a1          76 IDQSGATVWSEPRGVEAGNAYPQYSIHRGELQMILLAAVRERLGQQAVRTGLGVERIEERDGRVLIGAR-DGHGKPQA-L  153 (288)
T ss_dssp             ECTTSCEEEEEECGGGGTCSSCEEEEEHHHHHHHHHHHHHHHHCTTSEEESEEEEEEEEETTEEEEEEE-ETTSCEEE-E
T ss_pred             EcCCCCEEEeccccccccccCcccccchhhhHHHHHHHHHHhccCeeeecCcEEEEeeecCCcEEEEEE-cCCCCeEE-E
Confidence            777666432 111110     0    00         22334468899999999999999999988876 44  4445 9


Q ss_pred             eecEEEecCCCChHHHHHh
Q psy9141         145 DNQLIIGADGAYSGVRKCL  163 (379)
Q Consensus       145 ~adlVV~AdG~~S~vr~~l  163 (379)
                      ++|+||+|||.+|.+|+..
T Consensus       154 ~ad~vi~ADG~~S~vr~~~  172 (288)
T d3c96a1         154 GADVLVGADGIHSAVRAHL  172 (288)
T ss_dssp             EESEEEECCCTTCHHHHHH
T ss_pred             eeceeeccCCccceeeeee
Confidence            9999999999999999875

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=99.91  E-value=2.5e-26  Score=217.08  Aligned_cols=78  Identities=27%  Similarity=0.429  Sum_probs=68.6

Q ss_pred             CCcEEEECCChHHHHHHHHHH-----hCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCc
Q psy9141           6 KKSVVIVGGGLVGSLSACMFA-----KNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPM   80 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La-----~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~   80 (379)
                      .|||+||||||+||++|..|+     +.|++|+||||++.+...    ++++  +++++++++|+++|+|+++...+.+.
T Consensus         7 ~yDV~IvGaG~aGl~lA~~La~~~~~~~G~~v~vlEr~~~~~~~----~r~~--~l~~~~~~~L~~lGl~~~i~~~~~~~   80 (360)
T d1pn0a1           7 YCDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTKVYN----GQAD--GLQCRTLESLKNLGLADKILSEANDM   80 (360)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSSCCCS----CSCC--EECHHHHHHHHTTTCHHHHHTTCBCC
T ss_pred             CCCEEEECcCHHHHHHHHHHHhcccccCCCcEEEEcCCCCCCcC----CeEE--EECHHHHHHHHHcCChHHHHhhcCCc
Confidence            589999999999999999997     579999999999877654    7776  78999999999999999999988888


Q ss_pred             eeeEEEecC
Q psy9141          81 RARMIHGQN   89 (379)
Q Consensus        81 ~~~~~~~~~   89 (379)
                      ....++...
T Consensus        81 ~~~~~~~~~   89 (360)
T d1pn0a1          81 STIALYNPD   89 (360)
T ss_dssp             CEEEEEEEC
T ss_pred             ceeEEEecc
Confidence            887776643

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.87  E-value=7.1e-23  Score=188.59  Aligned_cols=151  Identities=19%  Similarity=0.188  Sum_probs=109.5

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeEEE
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARMIH   86 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~   86 (379)
                      +||+||||||+||++|+.|+++|++|+||||++.....  .+++++  .++++++++|+++|+++.+...+.+..+..++
T Consensus         3 ~~V~IvGaGp~Gl~~A~~L~~~G~~v~vlE~~~~~~~~--~~~~~~--~l~~~~~~~l~~lg~~~~l~~~~~~~~~~~~~   78 (292)
T d1k0ia1           3 TQVAIIGAGPSGLLLGQLLHKAGIDNVILERQTPDYVL--GRIRAG--VLEQGMVDLLREAGVDRRMARDGLVHEGVEIA   78 (292)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHTCCEEEECSSCHHHHH--TCCCCC--EECHHHHHHHHHTTCCHHHHHHCEEESCEEEE
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCC--CCceEE--EECHHHHHHHHHcCchHHHHhhcccccceEEE
Confidence            69999999999999999999999999999998754321  123443  68999999999999999999888888888877


Q ss_pred             ecCCcEEEeeC-----CC---CCcH--------HHHhcCCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEEE
Q psy9141          87 GQNGKLREIPY-----DP---VHNQ--------VELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLII  150 (379)
Q Consensus        87 ~~~g~~~~~~~-----~~---~~~~--------~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlVV  150 (379)
                      +..+... ..+     ..   ...+        ..+....+..++..+.++.+..+++++++++..+|++.+ ++||+||
T Consensus        79 ~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~g~~~~-i~a~~vV  156 (292)
T d1k0ia1          79 FAGQRRR-IDLKRLSGGKTVTVYGQTEVTRDLMEAREACGATTVYQAAEVRLHDLQGERPYVTFERDGERLR-LDCDYIA  156 (292)
T ss_dssp             ETTEEEE-ECHHHHHTSCCEEECCHHHHHHHHHHHHHHTTCEEESSCEEEEEECTTSSSCEEEEEETTEEEE-EECSEEE
T ss_pred             ecccccc-cccccccccccceeecHHHHHHHHHHHHHhCCCcEEEcceeeeeeeeccCceEEEEecCCcEEE-EEeCEEE
Confidence            7554321 111     00   0111        233444444444444555566667777776643777667 8999999


Q ss_pred             ecCCCChHHHHHh
Q psy9141         151 GADGAYSGVRKCL  163 (379)
Q Consensus       151 ~AdG~~S~vr~~l  163 (379)
                      +|||.+|.+|+.+
T Consensus       157 gADG~~S~vR~~i  169 (292)
T d1k0ia1         157 GCDGFHGISRQSI  169 (292)
T ss_dssp             ECCCTTCSTGGGS
T ss_pred             ECCCCCCccccee
Confidence            9999999999753

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=99.79  E-value=8.7e-19  Score=158.05  Aligned_cols=149  Identities=23%  Similarity=0.291  Sum_probs=111.7

Q ss_pred             CCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeE
Q psy9141           5 SKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARM   84 (379)
Q Consensus         5 ~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~   84 (379)
                      ...+|+||||||+||++|+.|+++|++|+||||++.+...   .++++  .+++++.++|+++|++.+....  +.....
T Consensus         3 ~~~kV~IiGaG~aGl~~A~~L~~~G~~v~v~Er~~~~~~~---~~~g~--~~~~~~~~~l~~~g~~~~~~~~--~~~~~~   75 (265)
T d2voua1           3 TTDRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQPLSG---FGTGI--VVQPELVHYLLEQGVELDSISV--PSSSME   75 (265)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCCC---CSCEE--ECCHHHHHHHHHTTCCGGGTCB--CCCEEE
T ss_pred             CCCcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCC---CceEE--EECccHHHHHHHcCcchhhhcc--CCCcce
Confidence            3468999999999999999999999999999998765321   14444  6899999999999987665433  333333


Q ss_pred             EEe-cCCcEE-EeeCCCCCc--H----HHHhcCCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEEEecCCCC
Q psy9141          85 IHG-QNGKLR-EIPYDPVHN--Q----VELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAY  156 (379)
Q Consensus        85 ~~~-~~g~~~-~~~~~~~~~--~----~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlVV~AdG~~  156 (379)
                      ..+ .++... .........  .    .......++++++++++++++.++++++++++ ||++   +++|++|+|||.+
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~v~v~~~-dG~~---~~~d~~v~adG~~  151 (265)
T d2voua1          76 YVDALTGERVGSVPADWRFTSYDSIYGGLYELFGPERYHTSKCLVGLSQDSETVQMRFS-DGTK---AEANWVIGADGGA  151 (265)
T ss_dssp             EEETTTCCEEEEEECCCCEEEHHHHHHHHHHHHCSTTEETTCCEEEEEECSSCEEEEET-TSCE---EEESEEEECCCTT
T ss_pred             eEeccCCceecccccccccchhHHHHHHHHHhcccceeecCcEEEEEEeeCCceEEEEC-CCCE---EEEEEEecccccc
Confidence            333 233332 222221111  1    33344567899999999999999999999999 9988   9999999999999


Q ss_pred             hHHHHHhh
Q psy9141         157 SGVRKCLM  164 (379)
Q Consensus       157 S~vr~~l~  164 (379)
                      |.+|..+.
T Consensus       152 s~~r~~~~  159 (265)
T d2voua1         152 SVVRKRLL  159 (265)
T ss_dssp             CHHHHHHH
T ss_pred             cccccccc
Confidence            99998763

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=99.57  E-value=1.3e-15  Score=136.21  Aligned_cols=145  Identities=14%  Similarity=0.171  Sum_probs=84.5

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCccc-ccccCHHHHHHHHHCCC----h----------
Q psy9141           6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSI-NLALSVRGREALRRIGL----E----------   70 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i-~~al~~~~~~~l~~lGl----~----------   70 (379)
                      +|||+||||||+|+++|+.|+++|++|+||||.+.+.......+... ...-...........+.    +          
T Consensus         2 ~yDViIIGaG~aGl~aA~~la~~G~~V~liEk~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (251)
T d2i0za1           2 HYDVIVIGGGPSGLMAAIGAAEEGANVLLLDKGNKLGRKLAISGGGRCNVTNRLPLDEIVKHIPGNGRFLYSAFSIFNNE   81 (251)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHTGGGTCCCEECSCHHHHHHTCTBTGGGGHHHHHHSCHH
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCcceeccCCcceecccccccchhhcccccchhhhhhhhhhhhhH
Confidence            59999999999999999999999999999999986542100000000 00000000011111110    0          


Q ss_pred             ---HHHHhCCCCceeeEEEecCCcEEEeeCCCCCcH-----HHHhcCCCCeEEeCceEEEEEecCCeEE-EEEccCCcee
Q psy9141          71 ---DKLLAHGIPMRARMIHGQNGKLREIPYDPVHNQ-----VELEQYPDCNIYFQHKLINLDVNSGNVT-FYRTEDNSET  141 (379)
Q Consensus        71 ---~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-----~~~~~~~gv~i~~~~~v~~i~~~~~~v~-v~~~~~G~~~  141 (379)
                         +.+...+.+..    ....+.  ..+......+     ....+..|++|+++++|++++.+++.+. +.++ +|+. 
T Consensus        82 ~~~~~~~~~g~~~~----~~~~~~--~~~~~~~~~~i~~~L~~~~~~~gv~i~~~~~v~~i~~~~~~~~~v~~~-~g~~-  153 (251)
T d2i0za1          82 DIITFFENLGVKLK----EEDHGR--MFPVSNKAQSVVDALLTRLKDLGVKIRTNTPVETIEYENGQTKAVILQ-TGEV-  153 (251)
T ss_dssp             HHHHHHHHTTCCEE----ECGGGE--EEETTCCHHHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEET-TCCE-
T ss_pred             HHHHHHHhcCCccc----cccccc--eecccccHHHHHHHHHHHHHHcCCcccCCcEEEEEEEECCEEEEEEeC-CCCe-
Confidence               00111111110    111111  1222221111     1223346999999999999999888765 6777 8887 


Q ss_pred             EEEeecEEEecCCCChHHH
Q psy9141         142 KITDNQLIIGADGAYSGVR  160 (379)
Q Consensus       142 ~~i~adlVV~AdG~~S~vr  160 (379)
                        ++||.||.|+|.+|..+
T Consensus       154 --i~a~~vI~AtGg~S~p~  170 (251)
T d2i0za1         154 --LETNHVVIAVGGKSVPQ  170 (251)
T ss_dssp             --EECSCEEECCCCSSSGG
T ss_pred             --EecCeEEEccCCccccc
Confidence              99999999999999544

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=99.52  E-value=7.9e-16  Score=139.47  Aligned_cols=47  Identities=11%  Similarity=0.245  Sum_probs=41.4

Q ss_pred             hcCCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEEEecCCCChH
Q psy9141         107 EQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAYSG  158 (379)
Q Consensus       107 ~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlVV~AdG~~S~  158 (379)
                      .+..|++|+.+++|++|+.+++.+.|+++ +|+    ++||.||.|+|.+|.
T Consensus       161 ~~~~Gv~i~~~~~V~~i~~~~~~~~V~t~-~g~----i~a~~vV~AaG~~s~  207 (276)
T d1ryia1         161 AKMLGAEIFEHTPVLHVERDGEALFIKTP-SGD----VWANHVVVASGVWSG  207 (276)
T ss_dssp             HHHTTCEEETTCCCCEEECSSSSEEEEET-TEE----EEEEEEEECCGGGTH
T ss_pred             HHHcCCEEecceEEEeEEeecceEEEecC-CeE----EEcCEEEECCCccHH
Confidence            44579999999999999998888889887 764    899999999999994

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=99.51  E-value=4.4e-14  Score=128.25  Aligned_cols=48  Identities=15%  Similarity=0.290  Sum_probs=42.4

Q ss_pred             HhcCCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEEEecCCCChH
Q psy9141         106 LEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAYSG  158 (379)
Q Consensus       106 ~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlVV~AdG~~S~  158 (379)
                      ..+..|++++++++|++++.+++++.|+++ +|+    ++||.||.|.|.+|.
T Consensus       159 ~a~~~Gv~i~~~~~V~~i~~~~~~v~V~t~-~g~----i~a~~VViAaG~~s~  206 (281)
T d2gf3a1         159 LAEARGAKVLTHTRVEDFDISPDSVKIETA-NGS----YTADKLIVSMGAWNS  206 (281)
T ss_dssp             HHHHTTCEEECSCCEEEEEECSSCEEEEET-TEE----EEEEEEEECCGGGHH
T ss_pred             ccccccccccCCcEEEEEEEECCEEEEEEC-CcE----EEcCEEEECCCCcch
Confidence            344579999999999999999999999987 774    899999999999985

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=99.44  E-value=1.6e-13  Score=122.97  Aligned_cols=142  Identities=18%  Similarity=0.182  Sum_probs=82.1

Q ss_pred             CCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCC--CCCCcc--cc--------cccC-HHHHHHHHHCCChH
Q psy9141           5 SKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSG--LSEGKS--IN--------LALS-VRGREALRRIGLED   71 (379)
Q Consensus         5 ~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~--~~~g~~--i~--------~al~-~~~~~~l~~lGl~~   71 (379)
                      +.+||+||||||+||++|+.|+++|++|+||||.+.+...-  ...|+.  .+        .... ......|......+
T Consensus         3 ~~~DViIIGaG~aGl~aA~~la~~G~~V~vlEk~~~~G~k~~~sGgG~~n~~n~~~~~~~~~~~~~~~~~~~l~~~~~~~   82 (253)
T d2gqfa1           3 QYSENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKIGRKILMSGGGFCNFTNLEVTPAHYLSQNPHFVKSALARYTNWD   82 (253)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHGGGGTCCCEESSCCGGGEECSCTTSTHHHHHHSCHHH
T ss_pred             CCCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCceEecCCccccccCcccCchhhhccChHHHHHHhhhhcccc
Confidence            35899999999999999999999999999999998653110  000000  00        0001 11223444443222


Q ss_pred             H---HHhCCCCceeeEEEecCCcEEEeeCCCCCcH-----HHHhcCCCCeEEeCceEEEEEecCCeE--E-EEEccCCce
Q psy9141          72 K---LLAHGIPMRARMIHGQNGKLREIPYDPVHNQ-----VELEQYPDCNIYFQHKLINLDVNSGNV--T-FYRTEDNSE  140 (379)
Q Consensus        72 ~---l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-----~~~~~~~gv~i~~~~~v~~i~~~~~~v--~-v~~~~~G~~  140 (379)
                      .   +...+...     ........ ++ ......     ....+..+++|+++++|++++..+++.  . +... ++.+
T Consensus        83 ~~~~~~~~g~~~-----~~~~~~~~-~~-~~~a~~i~~~L~~~~~~~gV~i~~~~~V~~i~~~~~~~~v~~~~~~-~~~~  154 (253)
T d2gqfa1          83 FISLVAEQGITY-----HEKELGQL-FC-DEGAEQIVEMLKSECDKYGAKILLRSEVSQVERIQNDEKVRFVLQV-NSTQ  154 (253)
T ss_dssp             HHHHHHHTTCCE-----EECSTTEE-EE-TTCTHHHHHHHHHHHHHHTCEEECSCCEEEEEECCSCSSCCEEEEE-TTEE
T ss_pred             hhhhhhhcCcce-----eeecCCcc-cc-ccchhHHHHHHHHHHHHcCCCeecCceEEEEEeecCCceeEEEEec-CCEE
Confidence            1   12222221     11122111 11 111111     222334689999999999998866532  2 2233 6666


Q ss_pred             eEEEeecEEEecCCCCh
Q psy9141         141 TKITDNQLIIGADGAYS  157 (379)
Q Consensus       141 ~~~i~adlVV~AdG~~S  157 (379)
                         ++||.||.|+|..|
T Consensus       155 ---~~a~~VIiAtGG~S  168 (253)
T d2gqfa1         155 ---WQCKNLIVATGGLS  168 (253)
T ss_dssp             ---EEESEEEECCCCSS
T ss_pred             ---EEeCEEEEcCCccc
Confidence               99999999999987

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=99.44  E-value=8.4e-13  Score=121.34  Aligned_cols=157  Identities=15%  Similarity=0.083  Sum_probs=90.6

Q ss_pred             CCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHH--------H-H----HHHHC-C--
Q psy9141           5 SKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRG--------R-E----ALRRI-G--   68 (379)
Q Consensus         5 ~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~--------~-~----~l~~l-G--   68 (379)
                      .++||+|||||++||++|+.|+++|.+|+||||.+.....+...+..+........        . .    .+..- +  
T Consensus        15 e~~DVlVIG~G~aGl~aA~~la~~G~~V~lvEK~~~~gG~s~~s~G~~~~~~~~~~~~~~~~d~~~~~~~d~~~~~~~~~   94 (308)
T d1y0pa2          15 DTVDVVVVGSGGAGFSAAISATDSGAKVILIEKEPVIGGNAKLAAGGMNAAWTDQQKAKKITDSPELMFEDTMKGGQNIN   94 (308)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTTGGGCCSCEECSSCHHHHHTTCCCCHHHHHHHHHHHTTTCS
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCcceecCCCCccccchhhhhhhccchHHHHHHHHHhhhhhcc
Confidence            35899999999999999999999999999999998765433333333321221110        0 0    00000 0  


Q ss_pred             --------------ChHHHHhCCCCceeeEEEecCCcE-EEeeCCCCCcH-------HHHhcCCCCeEEeCceEEEEEec
Q psy9141          69 --------------LEDKLLAHGIPMRARMIHGQNGKL-REIPYDPVHNQ-------VELEQYPDCNIYFQHKLINLDVN  126 (379)
Q Consensus        69 --------------l~~~l~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~-------~~~~~~~gv~i~~~~~v~~i~~~  126 (379)
                                    ..+.+...+.++............ ...+.......       .......+++|+++++++++..+
T Consensus        95 d~~lv~~~~~~~~~~i~~L~~~Gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~gv~i~~~~~v~~li~~  174 (308)
T d1y0pa2          95 DPALVKVLSSHSKDSVDWMTAMGADLTDVGMMGGASVNRAHRPTGGAGVGAHVVQVLYDNAVKRNIDLRMNTRGIEVLKD  174 (308)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHTTCCCCEEECCTTCSSCCEEESTTTCCHHHHHHHHHHHHHHHTTCEEESSEEEEEEEEC
T ss_pred             chHHHHHHHHhhhHHHHHHHHcCCCccccccccccccccccccccccchHHHHHHHHHHHHHhccceEEEeeccchhhhh
Confidence                          112233334443322111111000 11222221111       22233479999999999998776


Q ss_pred             CC-eE---EEEEccCCceeEEEeecEEEecCCCChHHHHHh
Q psy9141         127 SG-NV---TFYRTEDNSETKITDNQLIIGADGAYSGVRKCL  163 (379)
Q Consensus       127 ~~-~v---~v~~~~~G~~~~~i~adlVV~AdG~~S~vr~~l  163 (379)
                      ++ .+   .+... ++...+ ++|+.||.|+|.++...+.+
T Consensus       175 ~~G~V~Gv~~~~~-~~~~~~-i~Ak~VVlAtGG~~~n~~~~  213 (308)
T d1y0pa2         175 DKGTVKGILVKGM-YKGYYW-VKADAVILATGGFAKNNERV  213 (308)
T ss_dssp             TTSCEEEEEEEET-TTEEEE-EECSEEEECCCCCTTCHHHH
T ss_pred             ccccccccccccc-ccceeE-eecCeEEEccCcccccHHHH
Confidence            64 33   44444 565566 99999999999998766554

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.43  E-value=1.1e-12  Score=124.43  Aligned_cols=39  Identities=31%  Similarity=0.394  Sum_probs=36.1

Q ss_pred             CCcEEEECCChHHHHHHHHHHh------CCCcEEEEccCCCCCCC
Q psy9141           6 KKSVVIVGGGLVGSLSACMFAK------NQYEVNLYEAREDIRNS   44 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La~------~G~~V~viE~~~~~~~~   44 (379)
                      +||||||||||||+++|+.|||      .|++|+||||...+...
T Consensus        32 e~DViIVGgGPAGlsaA~~LA~l~~~~~~Gl~VlllEK~~~pG~k   76 (380)
T d2gmha1          32 EADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHIGAH   76 (380)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSSTTTT
T ss_pred             cCCEEEECCCHHHHHHHHHHHhhhhhhcCCCEEEEEcCCCCCCCC
Confidence            5899999999999999999998      89999999999988643

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=99.37  E-value=5.5e-13  Score=120.56  Aligned_cols=66  Identities=21%  Similarity=0.288  Sum_probs=46.6

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCC---CCCC------cccccccCHHHHHHHHHCCChHHH
Q psy9141           8 SVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSG---LSEG------KSINLALSVRGREALRRIGLEDKL   73 (379)
Q Consensus         8 dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~---~~~g------~~i~~al~~~~~~~l~~lGl~~~l   73 (379)
                      ||+||||||+||++|+.|+++|++|+|+|+.+.+....   ..+|      ...-....+...++++.+++...+
T Consensus         2 ~V~IIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~GG~~~t~~~~g~~~d~G~~~~~~~~~~~~~l~~~~~~~~~~   76 (347)
T d2ivda1           2 NVAVVGGGISGLAVAHHLRSRGTDAVLLESSARLGGAVGTHALAGYLVEQGPNSFLDREPATRALAAALNLEGRI   76 (347)
T ss_dssp             CEEEECCBHHHHHHHHHHHTTTCCEEEECSSSSSBTTCCEEEETTEEEESSCCCEETTCHHHHHHHHHTTCGGGE
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCCceEEEEeeCCEEEecCceEEecCCHHHHHHHHHhcccccc
Confidence            79999999999999999999999999999988664210   0011      111012345677788888875543

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

Probab=99.34  E-value=5e-12  Score=116.95  Aligned_cols=154  Identities=14%  Similarity=0.097  Sum_probs=89.2

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHH--------HH-HH----HHHC-C---
Q psy9141           6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVR--------GR-EA----LRRI-G---   68 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~--------~~-~~----l~~l-G---   68 (379)
                      ++||+|||+|++||++|+.|+++|.+|+||||.+.....+...+.++....+..        +. ..    ++.- +   
T Consensus        23 t~DVvVIG~G~aGl~aA~~la~~G~~V~llEk~~~~gG~s~~s~Ggi~~~~~~~~~~~~~~d~~~~~~~d~~~~~~~~~d  102 (322)
T d1d4ca2          23 TTDVVIIGSGGAGLAAAVSARDAGAKVILLEKEPIPGGNTKLAAGGMNAAETKPQAKLGIEDKKQIMIDDTMKGGRNIND  102 (322)
T ss_dssp             ECSEEEECSSHHHHHHHHHHHTTTCCEEEECSSSSSCTTGGGCCSCEECSSCHHHHHTTCCCCHHHHHHHHHHHTTTCSC
T ss_pred             cceEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCCcccccCCcccccCchhhhhcccCCCHHHHHHHHHhccccccC
Confidence            589999999999999999999999999999999876543222222221111110        00 00    0000 0   


Q ss_pred             -------------ChHHHHhCCCCceeeEEEecCCcE---EEeeCCCCC-cH------HHHhcCCCCeEEeCceEEEEEe
Q psy9141          69 -------------LEDKLLAHGIPMRARMIHGQNGKL---REIPYDPVH-NQ------VELEQYPDCNIYFQHKLINLDV  125 (379)
Q Consensus        69 -------------l~~~l~~~~~~~~~~~~~~~~g~~---~~~~~~~~~-~~------~~~~~~~gv~i~~~~~v~~i~~  125 (379)
                                   ..+.+.+.+.++...  ....+..   ...+..... ..      .......+++|+++++|+++..
T Consensus       103 ~~~~~~~~~~~~~~i~~l~~~Gv~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~gv~i~~~t~v~~li~  180 (322)
T d1d4ca2         103 PELVKVLANNSSDSIDWLTSMGADMTDV--GRMGGASVNRSHRPTGGAGVGAHVAQVLWDNAVKRGTDIRLNSRVVRILE  180 (322)
T ss_dssp             HHHHHHHHHTHHHHHHHHHHTTCCCCEE--ECCTTCSSCCEEESTTTCCSHHHHHHHHHHHHHHTTCEEETTEEEEEEEC
T ss_pred             HHHhhhhhhhhhhhhhhhhhhccccccc--ccccccccccccccccccchhHHHHHHHHHHHHhcCceEEEeeecccccc
Confidence                         112223334443322  1111111   111111111 11      2223336999999999999987


Q ss_pred             cCC----eEEEEEccCCceeEEEeecEEEecCCCChHHHHHh
Q psy9141         126 NSG----NVTFYRTEDNSETKITDNQLIIGADGAYSGVRKCL  163 (379)
Q Consensus       126 ~~~----~v~v~~~~~G~~~~~i~adlVV~AdG~~S~vr~~l  163 (379)
                      +++    ++.+... ++...+ +.|+.||.|+|.++...+++
T Consensus       181 d~~G~V~Gv~~~~~-~~~~~~-i~Ak~VIlAtGG~~~n~~~~  220 (322)
T d1d4ca2         181 DASGKVTGVLVKGE-YTGYYV-IKADAVVIAAGGFAKNNERV  220 (322)
T ss_dssp             CSSSCCCEEEEEET-TTEEEE-EECSEEEECCCCCTTCHHHH
T ss_pred             cccccccceEEEee-cccEEE-EeCCeEEEcCCCcccCHHHH
Confidence            654    3555555 565556 99999999999998765554

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=3.7e-12  Score=117.95  Aligned_cols=46  Identities=13%  Similarity=0.157  Sum_probs=40.2

Q ss_pred             HhcCCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEEEecCCC
Q psy9141         106 LEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGA  155 (379)
Q Consensus       106 ~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlVV~AdG~  155 (379)
                      +.+..+++|+++++|++|+.+++++.+++. ||++   ++||.||.|...
T Consensus       216 l~~~~g~~i~~~~~v~~I~~~~~~v~v~~~-~g~~---~~ad~vI~a~p~  261 (383)
T d2v5za1         216 IMDLLGDRVKLERPVIYIDQTRENVLVETL-NHEM---YEAKYVISAIPP  261 (383)
T ss_dssp             HHHHHGGGEEESCCEEEEECSSSSEEEEET-TSCE---EEESEEEECSCG
T ss_pred             HHHHcCCeEEecCcceEEEecCCeEEEEEC-CCCE---EECCEEEECCCH
Confidence            344568899999999999999999999999 9988   999999999754

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=99.34  E-value=7.6e-13  Score=121.33  Aligned_cols=48  Identities=10%  Similarity=0.214  Sum_probs=40.7

Q ss_pred             HhcCCCCeEEeCceEEEEEecCCeEE-EEEccCCceeEEEeecEEEecCCCChH
Q psy9141         106 LEQYPDCNIYFQHKLINLDVNSGNVT-FYRTEDNSETKITDNQLIIGADGAYSG  158 (379)
Q Consensus       106 ~~~~~gv~i~~~~~v~~i~~~~~~v~-v~~~~~G~~~~~i~adlVV~AdG~~S~  158 (379)
                      .++..|++++.+++|++++.++++++ |.+. +| +   ++||.||.|.|.+|.
T Consensus       157 ~a~~~gv~i~~~~~V~~i~~~~~~v~~V~T~-~g-~---i~a~~VV~aaG~~s~  205 (305)
T d1pj5a2         157 RTESAGVTYRGSTTVTGIEQSGGRVTGVQTA-DG-V---IPADIVVSCAGFWGA  205 (305)
T ss_dssp             HHHHTTCEEECSCCEEEEEEETTEEEEEEET-TE-E---EECSEEEECCGGGHH
T ss_pred             hhhcccccccCCceEEEEEEeCCEEEEEecc-ce-e---EECCEEEEecchhHH
Confidence            34457999999999999999999876 6665 65 4   999999999999985

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.28  E-value=5.8e-12  Score=117.23  Aligned_cols=40  Identities=23%  Similarity=0.374  Sum_probs=35.3

Q ss_pred             CCCCCCCcEEEECCChHHHHHHHHHHhCC--CcEEEEccCCCCC
Q psy9141           1 MKCNSKKSVVIVGGGLVGSLSACMFAKNQ--YEVNLYEAREDIR   42 (379)
Q Consensus         1 M~~m~~~dVvIVGaGpaGl~~A~~La~~G--~~V~viE~~~~~~   42 (379)
                      |++|+  .|+||||||+||++|..|++.|  ++|+|+||++.++
T Consensus         1 m~~~K--rVaIIGaG~sGl~~A~~L~~~~~~~~v~vfEk~~~iG   42 (335)
T d2gv8a1           1 LPTIR--KIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPG   42 (335)
T ss_dssp             CCSCC--EEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSSSS
T ss_pred             CCCCC--eEEEECcCHHHHHHHHHHHHhCCCCCEEEEECCCCCC
Confidence            77666  7999999999999999998876  5999999998764

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=99.26  E-value=2.5e-11  Score=112.01  Aligned_cols=155  Identities=13%  Similarity=0.114  Sum_probs=89.9

Q ss_pred             CCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHH-------------HHHHHHHCC---
Q psy9141           5 SKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVR-------------GREALRRIG---   68 (379)
Q Consensus         5 ~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~-------------~~~~l~~lG---   68 (379)
                      .++||+|||||++||++|+.|+++|.+|+|+||.+.....+...+.++....+..             ...+++.-+   
T Consensus        18 e~~DVvVIGaG~aGl~AA~~aa~~G~~V~vlEK~~~~gG~S~~a~Ggi~a~~~~~~~~~g~~d~~~~~~~d~~~~~~~~~   97 (317)
T d1qo8a2          18 ETTQVLVVGAGSAGFNASLAAKKAGANVILVDKAPFSGGNSMISAGGMNAVGTKQQTAHGVEDKVEWFIEDAMKGGRQQN   97 (317)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSSCTTGGGCCSCEECSSCHHHHHTTCCCCHHHHHHHHHHHTTTCS
T ss_pred             CccCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCCchhhcCCCcccccchhhhhcccCCcHHHHHHHHHHhhcccc
Confidence            3589999999999999999999999999999999876543322222222111110             001111100   


Q ss_pred             --------------ChHHHHhCCCCceeeEEEecCCcE---EEeeCCCC-CcH------HHHhcCCCCeEEeCceEEEEE
Q psy9141          69 --------------LEDKLLAHGIPMRARMIHGQNGKL---REIPYDPV-HNQ------VELEQYPDCNIYFQHKLINLD  124 (379)
Q Consensus        69 --------------l~~~l~~~~~~~~~~~~~~~~g~~---~~~~~~~~-~~~------~~~~~~~gv~i~~~~~v~~i~  124 (379)
                                    ..+.+...+.++...  ....+..   ...++... .+.      ....+..+++++++++++++.
T Consensus        98 d~~lv~~~~~~a~~~i~~l~~~Gv~~~~~--~~~gg~~~~r~~~~~~g~~~g~~i~~~L~~~~~~~g~~i~~~~~v~~l~  175 (317)
T d1qo8a2          98 DIKLVTILAEQSADGVQWLESLGANLDDL--KRSGGARVDRTHRPHGGKSSGPEIIDTLRKAAKEQGIDTRLNSRVVKLV  175 (317)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHTTCCCCEE--ECCTTCSSCCEEECSSSSCHHHHHHHHHHHHHHHTTCCEECSEEEEEEE
T ss_pred             chhHHHHHHhhhhhhhhhHHHhhhccccc--ccccCcccccccccccccccchhhhHHHHHHhhhccceeeeccchhhee
Confidence                          011222334443321  1111111   11122211 111      222344699999999999987


Q ss_pred             ecCC-e---EEEEEccCCceeEEEeecEEEecCCCChHHHHHh
Q psy9141         125 VNSG-N---VTFYRTEDNSETKITDNQLIIGADGAYSGVRKCL  163 (379)
Q Consensus       125 ~~~~-~---v~v~~~~~G~~~~~i~adlVV~AdG~~S~vr~~l  163 (379)
                      .+++ .   +.+... ++...+ +.|+-||.|+|.++.-.+++
T Consensus       176 ~~~~g~V~Gv~~~~~-~~~~~~-i~Ak~VVlAtGG~~~n~~~~  216 (317)
T d1qo8a2         176 VNDDHSVVGAVVHGK-HTGYYM-IGAKSVVLATGGYGMNKEMI  216 (317)
T ss_dssp             ECTTSBEEEEEEEET-TTEEEE-EEEEEEEECCCCCTTCHHHH
T ss_pred             ecccccceeeEeecc-cceEEE-EeccceEEeccccccCHHHH
Confidence            6544 3   444555 676666 89999999999998655544

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.23  E-value=1.8e-11  Score=107.12  Aligned_cols=39  Identities=10%  Similarity=0.305  Sum_probs=36.3

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCC
Q psy9141           4 NSKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIR   42 (379)
Q Consensus         4 m~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~   42 (379)
                      +.+|||||||||++||++|+.|+++|++|+|||+++.+.
T Consensus         3 ~~~yDviViGaG~~Gl~~A~~La~~G~~V~vlE~~~~~G   41 (297)
T d2bcgg1           3 DTDYDVIVLGTGITECILSGLLSVDGKKVLHIDKQDHYG   41 (297)
T ss_dssp             CCBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSC
T ss_pred             CCcCCEEEECcCHHHHHHHHHHHHCCCCEEEEcCCCCCC
Confidence            358999999999999999999999999999999998664

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

Probab=99.20  E-value=5.5e-11  Score=110.11  Aligned_cols=41  Identities=22%  Similarity=0.254  Sum_probs=36.5

Q ss_pred             CCCCCCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCC
Q psy9141           1 MKCNSKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIR   42 (379)
Q Consensus         1 M~~m~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~   42 (379)
                      |+ +..|||+|||||++||++|+.|+++|.+|+||||.+...
T Consensus         1 m~-~~~~DVvVIG~G~AGl~AAl~aa~~G~~V~liEK~~~~~   41 (336)
T d2bs2a2           1 MK-VQYCDSLVIGGGLAGLRAAVATQQKGLSTIVLSLIPVKR   41 (336)
T ss_dssp             CC-EEECSEEEECCSHHHHHHHHHHHTTTCCEEEECSSCGGG
T ss_pred             CC-ceecCEEEECcCHHHHHHHHHHHHCCCCEEEEecCCCCC
Confidence            55 456899999999999999999999999999999987553

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=99.20  E-value=1.5e-11  Score=112.90  Aligned_cols=38  Identities=37%  Similarity=0.473  Sum_probs=34.7

Q ss_pred             CCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCC
Q psy9141           5 SKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIR   42 (379)
Q Consensus         5 ~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~   42 (379)
                      .+.+|+||||||+||++|+.|+++|++|+|||+.+.+.
T Consensus        29 ~pkkV~IIGaG~aGLsaA~~L~~~G~~V~vlE~~~~~G   66 (370)
T d2iida1          29 NPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASERPG   66 (370)
T ss_dssp             SCCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSSSSB
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCC
Confidence            45699999999999999999999999999999987654

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=99.20  E-value=6e-12  Score=115.38  Aligned_cols=123  Identities=14%  Similarity=0.118  Sum_probs=76.8

Q ss_pred             CCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCC---CCCCcccccccCHHHHHHHHHCCChHHHHhCCCCce
Q psy9141           5 SKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSG---LSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMR   81 (379)
Q Consensus         5 ~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~---~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~   81 (379)
                      .++||+|||||++||++|..|.+.|++|+|+|+++.+....   .+.|...                   ..........
T Consensus         6 ~~~dV~IIGAG~sGl~~a~~L~~~G~~v~i~Ek~~~iGGtW~~n~ypg~~~-------------------d~~~~~~~~s   66 (298)
T d1w4xa1           6 EEVDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWYWNRYPGARC-------------------DIESIEYCYS   66 (298)
T ss_dssp             SEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHCCCTTCBC-------------------SSCTTTSSCC
T ss_pred             CCCCEEEECccHHHHHHHHHHHhCCCCEEEEEcCCCcccccccCCCCCcee-------------------cccccccccc
Confidence            45799999999999999999999999999999998664210   0001000                   0000000000


Q ss_pred             eeEEEecCCcEEEeeCCC----CCcH------HHHhcCCCC--eEEeCceEEEEEecC--CeEEEEEccCCceeEEEeec
Q psy9141          82 ARMIHGQNGKLREIPYDP----VHNQ------VELEQYPDC--NIYFQHKLINLDVNS--GNVTFYRTEDNSETKITDNQ  147 (379)
Q Consensus        82 ~~~~~~~~g~~~~~~~~~----~~~~------~~~~~~~gv--~i~~~~~v~~i~~~~--~~v~v~~~~~G~~~~~i~ad  147 (379)
                             .......++.+    ....      ....+.-++  .|+++++|++++.++  +.|+|++. ++++   +++|
T Consensus        67 -------~~~~~~~~~~~~~~~p~~~e~~~Yl~~~a~~~~L~~~I~f~t~V~~~~~de~~~~W~V~~~-~~~~---~~~~  135 (298)
T d1w4xa1          67 -------FSEEVLQEWNWTERYASQPEILRYINFVADKFDLRSGITFHTTVTAAAFDEATNTWTVDTN-HGDR---IRAR  135 (298)
T ss_dssp             -------SCHHHHHHCCCCBSSCBHHHHHHHHHHHHHHTTGGGGEECSCCEEEEEEETTTTEEEEEET-TCCE---EEEE
T ss_pred             -------ccccccCCCCCccccCccchHHHHHHHHHHHcCCcccccCCcEEEEEEEecCCCceeeccc-cccc---cccc
Confidence                   00000000000    1011      233333455  599999999998544  57999998 8887   8999


Q ss_pred             EEEecCCCCh
Q psy9141         148 LIIGADGAYS  157 (379)
Q Consensus       148 lVV~AdG~~S  157 (379)
                      +||.|+|..|
T Consensus       136 ~~i~atG~ls  145 (298)
T d1w4xa1         136 YLIMASGQLS  145 (298)
T ss_dssp             EEEECCCSCC
T ss_pred             eEEEeecccc
Confidence            9999999876

>d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Escherichia coli [TaxId: 562]

Probab=99.15  E-value=8.5e-11  Score=108.21  Aligned_cols=153  Identities=15%  Similarity=0.138  Sum_probs=84.3

Q ss_pred             CCCcEEEECCChHHHHHHHHHHhC--CCcEEEEccCCCCCCCCCCCCcccccccC---------------------HHHH
Q psy9141           5 SKKSVVIVGGGLVGSLSACMFAKN--QYEVNLYEAREDIRNSGLSEGKSINLALS---------------------VRGR   61 (379)
Q Consensus         5 ~~~dVvIVGaGpaGl~~A~~La~~--G~~V~viE~~~~~~~~~~~~g~~i~~al~---------------------~~~~   61 (379)
                      .++||+|||+|+|||++|+.+++.  |.+|+|+||.+.....+.....++..++.                     +...
T Consensus         4 ~~~DVlVIG~G~AGl~AA~~a~~~~~g~~V~lleK~~~~~g~s~~A~GGi~a~~~~~Ds~e~~~~dt~~~g~~~~d~~~v   83 (311)
T d1kf6a2           4 FQADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYPMRSHTVAAEGGSAAVAQDHDSFEYHFHDTVAGGDWLCEQDVV   83 (311)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHHCTTCCEEEEESSCGGGSGGGGCCSCEECCCSTTCCHHHHHHHHHHHTTTCSCHHHH
T ss_pred             eecCEEEECccHHHHHHHHHHHHhCCCCEEEEEECCCCCCCcHHHHhhhHhhhcCCCCCHHHHHHHHHhhccCccHHHHH
Confidence            468999999999999999999986  77999999987543322111112211111                     1111


Q ss_pred             HHHHHCC--ChHHHHhCCCCceeeE-----EEecCCcE--EEeeCCCCCcH-------HHHhcCCCCeEEeCceEEEEEe
Q psy9141          62 EALRRIG--LEDKLLAHGIPMRARM-----IHGQNGKL--REIPYDPVHNQ-------VELEQYPDCNIYFQHKLINLDV  125 (379)
Q Consensus        62 ~~l~~lG--l~~~l~~~~~~~~~~~-----~~~~~g~~--~~~~~~~~~~~-------~~~~~~~gv~i~~~~~v~~i~~  125 (379)
                      +.+-...  ....+...+.++....     .....+..  .........+.       ....+.++++++.++.++++..
T Consensus        84 ~~~~~~~~~~i~~L~~~g~~f~~~~~~~~~~~~~~~~~~~r~~~~~~~~g~~~~~~~l~~~~~~~~v~i~~~~~v~~Ll~  163 (311)
T d1kf6a2          84 DYFVHHCPTEMTQLELWGCPWSRRPDGSVNVRRFGGMKIERTWFAADKTGFHMLHTLFQTSLQFPQIQRFDEHFVLDILV  163 (311)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCCCBCTTSSBCCBCCTTCSSCCEECSTTCHHHHHHHHHHHHHTTCTTEEEEETEEEEEEEE
T ss_pred             HHHHHhhhHhHHhhhhcccccccccccccccccccccccccccccccchhhHHHHhHHHHHHccCcceeEeeeEeeeeEe
Confidence            1111000  0111222222221100     00000000  00111111111       3445667899999999999988


Q ss_pred             cCCeEE---EEEccCCceeEEEeecEEEecCCCChH
Q psy9141         126 NSGNVT---FYRTEDNSETKITDNQLIIGADGAYSG  158 (379)
Q Consensus       126 ~~~~v~---v~~~~~G~~~~~i~adlVV~AdG~~S~  158 (379)
                      +++.+.   +....+|+... +.|+-||.|+|.++.
T Consensus       164 d~g~v~Gvv~~~~~~g~~~~-~~AkaVILATGG~g~  198 (311)
T d1kf6a2         164 DDGHVRGLVAMNMMEGTLVQ-IRANAVVMATGGAGR  198 (311)
T ss_dssp             ETTEEEEEEEEETTTTEEEE-EECSCEEECCCCCGG
T ss_pred             cCCcceeEEEEEcCCCcEEE-EECCEEEEcCCCccc
Confidence            887654   22222788766 899999999999974

>d1chua2 c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: L-aspartate oxidase
species: Escherichia coli [TaxId: 562]

Probab=99.11  E-value=3.3e-10  Score=103.59  Aligned_cols=153  Identities=16%  Similarity=0.202  Sum_probs=78.3

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHH-HH-----HHHHHC-CC---------
Q psy9141           6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVR-GR-----EALRRI-GL---------   69 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~-~~-----~~l~~l-Gl---------   69 (379)
                      ++||||||+|++||++|+.+++.| +|+||||.+.....+...+.+++.++... +.     ..++.. ++         
T Consensus         7 ~~DVvVVG~G~AGl~AA~~a~~~g-~V~llEK~~~~gG~s~~a~Ggi~a~~~~~D~~~~~~~d~~~~~~~~~~~~~~~~~   85 (305)
T d1chua2           7 SCDVLIIGSGAAGLSLALRLADQH-QVIVLSKGPVTEGSTFYAQGGIAAVFDETDSIDSHVEDTLIAGAGICDRHAVEFV   85 (305)
T ss_dssp             ECSEEEECCSHHHHHHHHHHTTTS-CEEEECSSCTTC-------------CCSHHHHHHHHHHHHHHTTTCCCHHHHHHH
T ss_pred             cCCEEEECccHHHHHHHHHhhcCC-CEEEEECCCCCCCchHHhCcceEEEECCCCCHHHHHHHhhhcccCcccHHHHHHH
Confidence            589999999999999999999988 99999999866543322222332222111 11     111111 10         


Q ss_pred             -------hHHHHhCCCCceeeE---------EEecCCcEE-EeeCC-CCCc-------HHHHhcCCCCeEEeCceEEEEE
Q psy9141          70 -------EDKLLAHGIPMRARM---------IHGQNGKLR-EIPYD-PVHN-------QVELEQYPDCNIYFQHKLINLD  124 (379)
Q Consensus        70 -------~~~l~~~~~~~~~~~---------~~~~~g~~~-~~~~~-~~~~-------~~~~~~~~gv~i~~~~~v~~i~  124 (379)
                             .+.+...+.++....         .....+... +..+. ....       .....+..+++++.++.++++.
T Consensus        86 ~~~~~e~~~~l~~~g~~f~~~~~~~~~~~~~~~~~gg~s~~r~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~Li  165 (305)
T d1chua2          86 ASNARSCVQWLIDQGVLFDTHIQPNGEESYHLTREGGHSHRRILHAADATGREVETTLVSKALNHPNIRVLERTNAVDLI  165 (305)
T ss_dssp             HHHHHHHHHHHHHTTCC--------------------------------------CCCHHHHHHCTTEEEECSEEEEEEE
T ss_pred             HHhcchhhhHHHhcCCccccccccccccchhccccCCCccCeEEecCCCCCchhHHHHHHHHHhccCcceeceeEEEEEE
Confidence                   111222222221110         000011100 00000 0000       0444556899999999999988


Q ss_pred             ecCC-------eE---EEEEccCCceeEEEeecEEEecCCCChHHH
Q psy9141         125 VNSG-------NV---TFYRTEDNSETKITDNQLIIGADGAYSGVR  160 (379)
Q Consensus       125 ~~~~-------~v---~v~~~~~G~~~~~i~adlVV~AdG~~S~vr  160 (379)
                      .+++       .+   .+....+|+... +.++-||.|+|.++.+.
T Consensus       166 ~~~~~~~~~~~rv~Gv~~~~~~~g~~~~-~~ak~VilAtGG~~~~~  210 (305)
T d1chua2         166 VSDKIGLPGTRRVVGAWVWNRNKETVET-CHAKAVVLATGGASKVY  210 (305)
T ss_dssp             EGGGTTCCSSCBEEEEEEEETTTTEEEE-EECSEEEECCCCCGGGS
T ss_pred             EEcCcccccCceEEEEEEEeCCCCcEEE-EeecceEEeeeccccce
Confidence            7653       23   333232666666 89999999999998654

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=99.05  E-value=1.2e-09  Score=85.33  Aligned_cols=94  Identities=17%  Similarity=0.123  Sum_probs=71.5

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeEEE
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARMIH   86 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~   86 (379)
                      ..|+|||||++|+-+|..|++.|.+|+|+|+.+.....           +.+...+.+.                     
T Consensus        22 ~~vvIiGgG~ig~E~A~~l~~~G~~Vtlve~~~~~l~~-----------~d~~~~~~~~---------------------   69 (116)
T d1gesa2          22 ERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDAPLPS-----------FDPMISETLV---------------------   69 (116)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTT-----------SCHHHHHHHH---------------------
T ss_pred             CEEEEECCChhhHHHHHHhhccccEEEEEeecchhhhh-----------cchhhHHHHH---------------------
Confidence            47999999999999999999999999999998754211           1121111110                     


Q ss_pred             ecCCcEEEeeCCCCCcHHHHhcCCCCeEEeCceEEEEEecCC-eEEEEEccCCceeEEEeecEEEecCC
Q psy9141          87 GQNGKLREIPYDPVHNQVELEQYPDCNIYFQHKLINLDVNSG-NVTFYRTEDNSETKITDNQLIIGADG  154 (379)
Q Consensus        87 ~~~g~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~-~v~v~~~~~G~~~~~i~adlVV~AdG  154 (379)
                                       +.+. ..|++++++++|+.++.+++ .+++++. +|++   +++|.||.|.|
T Consensus        70 -----------------~~l~-~~GV~~~~~~~v~~i~~~~~~~~~v~~~-~g~~---~~~D~vi~a~G  116 (116)
T d1gesa2          70 -----------------EVMN-AEGPQLHTNAIPKAVVKNTDGSLTLELE-DGRS---ETVDCLIWAIG  116 (116)
T ss_dssp             -----------------HHHH-HHSCEEECSCCEEEEEECTTSCEEEEET-TSCE---EEESEEEECSC
T ss_pred             -----------------HHHH-HCCCEEEeCCEEEEEEEcCCcEEEEEEC-CCCE---EEcCEEEEecC
Confidence                             1112 24899999999999987765 5788898 9988   99999999988

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=99.04  E-value=2.3e-09  Score=84.06  Aligned_cols=98  Identities=17%  Similarity=0.240  Sum_probs=73.8

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeEE
Q psy9141           6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARMI   85 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~~   85 (379)
                      +.+++|||||+.|+-+|..|++.|.+|+++|+.+..-..           +.+.....+++                   
T Consensus        22 p~~i~IiG~G~ig~E~A~~l~~~G~~Vtiv~~~~~ll~~-----------~d~ei~~~l~~-------------------   71 (119)
T d3lada2          22 PGKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDKFLPA-----------VDEQVAKEAQK-------------------   71 (119)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTT-----------SCHHHHHHHHH-------------------
T ss_pred             CCeEEEECCChHHHHHHHHHHHcCCceEEEEeecccCCc-----------ccchhHHHHHH-------------------
Confidence            358999999999999999999999999999988754311           22222222211                   


Q ss_pred             EecCCcEEEeeCCCCCcHHHHhcCCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEEEecCC
Q psy9141          86 HGQNGKLREIPYDPVHNQVELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADG  154 (379)
Q Consensus        86 ~~~~g~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlVV~AdG  154 (379)
                                         .+. ..|+++++++++++++.+++++++++.+.+...+ +++|+|+.|.|
T Consensus        72 -------------------~l~-~~Gv~i~~~~~v~~i~~~~~~v~v~~~~~~~~~~-~~~D~vlvAvG  119 (119)
T d3lada2          72 -------------------ILT-KQGLKILLGARVTGTEVKNKQVTVKFVDAEGEKS-QAFDKLIVAVG  119 (119)
T ss_dssp             -------------------HHH-HTTEEEEETCEEEEEEECSSCEEEEEESSSEEEE-EEESEEEECSC
T ss_pred             -------------------HHH-hcCceeecCcEEEEEEEeCCEEEEEEEECCCCEE-EECCEEEEeeC
Confidence                               122 2589999999999999999998888772233345 99999999987

>d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Succinate dehydogenase
species: Escherichia coli [TaxId: 562]

Probab=99.02  E-value=9.9e-10  Score=101.62  Aligned_cols=39  Identities=18%  Similarity=0.188  Sum_probs=35.9

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCC
Q psy9141           4 NSKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIR   42 (379)
Q Consensus         4 m~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~   42 (379)
                      ++++||+|||+|+|||++|+.++++|.+|+|+||.+...
T Consensus         5 ~~~~DVlVVG~G~AGl~AAl~aa~~G~~V~lleK~~~~g   43 (330)
T d1neka2           5 VREFDAVVIGAGGAGMRAALQISQSGQTCALLSKVFPTR   43 (330)
T ss_dssp             EEEESCEEECCSHHHHHHHHHHHHTTCCCEEECSSCGGG
T ss_pred             cccCCEEEECcCHHHHHHHHHHHHcCCeEEEEeCCCCCC
Confidence            457999999999999999999999999999999987554

>d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GidA-like
domain: GidA-related protein TTHA1897
species: Thermus thermophilus [TaxId: 274]

Probab=98.98  E-value=3.7e-09  Score=91.98  Aligned_cols=120  Identities=17%  Similarity=0.156  Sum_probs=75.6

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeEE
Q psy9141           6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARMI   85 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~~   85 (379)
                      .|||+||||||||+.+|+++||.|.+|+||+++........+.....   ....+. +-+..                  
T Consensus         2 ~YDVIVIGgG~AG~eAA~~aAR~G~ktllit~~~~~ig~~~cnp~~g---g~~kg~-l~rei------------------   59 (230)
T d2cula1           2 AYQVLIVGAGFSGAETAFWLAQKGVRVGLLTQSLDAVMMPFLPPKPP---FPPGSL-LERAY------------------   59 (230)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCSSCCCSC---CCTTCH-HHHHC------------------
T ss_pred             CCcEEEECcCHHHHHHHHHHHHCCCcEEEEEeccchhcccccCCccc---cCCCcc-eeeee------------------
Confidence            59999999999999999999999999999998742211101111000   000000 00000                  


Q ss_pred             EecCCcEEEeeCCCCC-cH--HHHhcCCCCeEEeCceEEEEEecCCeEE-EEEccCCceeEEEeecEEEecCCCChH
Q psy9141          86 HGQNGKLREIPYDPVH-NQ--VELEQYPDCNIYFQHKLINLDVNSGNVT-FYRTEDNSETKITDNQLIIGADGAYSG  158 (379)
Q Consensus        86 ~~~~g~~~~~~~~~~~-~~--~~~~~~~gv~i~~~~~v~~i~~~~~~v~-v~~~~~G~~~~~i~adlVV~AdG~~S~  158 (379)
                       +..+..     .+.. .|  ..+...++.+++.+ +|+++..+++.+. |++. +|.+   +.|+-||.|+|-+..
T Consensus        60 -d~kG~a-----v~a~raQ~k~~l~~~~nL~i~q~-~V~dli~e~~~v~gV~t~-~G~~---~~AkaVILtTGTFL~  125 (230)
T d2cula1          60 -DPKDER-----VWAFHARAKYLLEGLRPLHLFQA-TATGLLLEGNRVVGVRTW-EGPP---ARGEKVVLAVGSFLG  125 (230)
T ss_dssp             -CTTCCC-----HHHHHHHHHHHHHTCTTEEEEEC-CEEEEEEETTEEEEEEET-TSCC---EECSEEEECCTTCSS
T ss_pred             -eccchh-----hhhHHHHHHHHHhhhcCHHHHhc-cceeeEecccceeeEEec-cccE---EEEeEEEEccCccee
Confidence             001100     0000 01  34456678888865 6888888887765 7888 8988   999999999998863

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.98  E-value=5.3e-09  Score=81.62  Aligned_cols=95  Identities=16%  Similarity=0.246  Sum_probs=71.2

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeEE
Q psy9141           6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARMI   85 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~~   85 (379)
                      +.+|+|||||++|+-+|..|++.|.+|+|+|+.+..-..           +.+...+.+.                    
T Consensus        22 p~~v~IiGgG~ig~E~A~~l~~~G~~Vtlve~~~~il~~-----------~d~~~~~~l~--------------------   70 (117)
T d1ebda2          22 PKSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEILSG-----------FEKQMAAIIK--------------------   70 (117)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTT-----------SCHHHHHHHH--------------------
T ss_pred             CCeEEEECCCccceeeeeeecccccEEEEEEecceeccc-----------ccchhHHHHH--------------------
Confidence            358999999999999999999999999999998754211           1111111110                    


Q ss_pred             EecCCcEEEeeCCCCCcHHHHhcCCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEEEe
Q psy9141          86 HGQNGKLREIPYDPVHNQVELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIG  151 (379)
Q Consensus        86 ~~~~g~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlVV~  151 (379)
                                        ..+. ..|++++++++|++++.+++++++.+..+|+..+ +++|.||.
T Consensus        71 ------------------~~l~-~~GI~i~~~~~v~~i~~~~~~~~v~~~~~g~~~~-i~~D~Vlv  116 (117)
T d1ebda2          71 ------------------KRLK-KKGVEVVTNALAKGAEEREDGVTVTYEANGETKT-IDADYVLV  116 (117)
T ss_dssp             ------------------HHHH-HTTCEEEESEEEEEEEEETTEEEEEEEETTEEEE-EEESEEEE
T ss_pred             ------------------HHHH-hcCCEEEcCCEEEEEEEcCCEEEEEEEeCCCEEE-EEeEEEEE
Confidence                              1222 2589999999999999999888877654776666 99999985

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=98.96  E-value=3.9e-09  Score=84.45  Aligned_cols=96  Identities=18%  Similarity=0.294  Sum_probs=71.5

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeEE
Q psy9141           6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARMI   85 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~~   85 (379)
                      ..+|+|||||++|+-+|..|++.|.+|+|+|+.+.+-..          .+.+...+.++                    
T Consensus        35 ~k~v~VIGgG~iG~E~A~~l~~~g~~Vtvie~~~~~l~~----------~~~~~~~~~~~--------------------   84 (133)
T d1q1ra2          35 DNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAARVLER----------VTAPPVSAFYE--------------------   84 (133)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTT----------TSCHHHHHHHH--------------------
T ss_pred             CCEEEEECCchHHHHHHHHHHhhCcceeeeeeccccccc----------ccchhhhhhhh--------------------
Confidence            358999999999999999999999999999998754311          12222222211                    


Q ss_pred             EecCCcEEEeeCCCCCcHHHHhcCCCCeEEeCceEEEEEecCC--eEE-EEEccCCceeEEEeecEEEecCC
Q psy9141          86 HGQNGKLREIPYDPVHNQVELEQYPDCNIYFQHKLINLDVNSG--NVT-FYRTEDNSETKITDNQLIIGADG  154 (379)
Q Consensus        86 ~~~~g~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~--~v~-v~~~~~G~~~~~i~adlVV~AdG  154 (379)
                                         ...+..|++++++++|+.++...+  .++ +.++ +|++   +.||+||.|.|
T Consensus        85 -------------------~~~~~~GV~i~~~~~v~~i~~~~~~~~v~~v~~~-~G~~---i~~D~vi~a~G  133 (133)
T d1q1ra2          85 -------------------HLHREAGVDIRTGTQVCGFEMSTDQQKVTAVLCE-DGTR---LPADLVIAGIG  133 (133)
T ss_dssp             -------------------HHHHHHTCEEECSCCEEEEEECTTTCCEEEEEET-TSCE---EECSEEEECCC
T ss_pred             -------------------hcccccccEEEeCCeEEEEEEeCCCceEEEEECC-CCCE---EECCEEEEeeC
Confidence                               111235899999999999987543  343 6788 9988   99999999987

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=98.95  E-value=6.7e-10  Score=97.45  Aligned_cols=44  Identities=16%  Similarity=0.216  Sum_probs=37.8

Q ss_pred             cCCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEEEecCCC
Q psy9141         108 QYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGA  155 (379)
Q Consensus       108 ~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlVV~AdG~  155 (379)
                      +..+..+++++.+..+...++.+.+++. +|+.   +++|.++.+...
T Consensus       221 ~~~~~~i~~~~~v~~i~~~~~~v~v~~~-~g~~---~~~d~~~~~~~~  264 (347)
T d1b5qa1         221 KIVDPRLQLNKVVREIKYSPGGVTVKTE-DNSV---YSADYVMVSASL  264 (347)
T ss_dssp             CBCCTTEESSCCEEEEEECSSCEEEEET-TSCE---EEESEEEECSCH
T ss_pred             hhcccccccccccccccccCccEEEEEC-CCCE---EEcCEEEeecCH
Confidence            4456789999999999999999999999 9988   899999987653

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=98.94  E-value=8e-09  Score=81.12  Aligned_cols=92  Identities=16%  Similarity=0.251  Sum_probs=67.4

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeEE
Q psy9141           6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARMI   85 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~~   85 (379)
                      ..+|+|||||++|+-+|..|++.|.+|+++|+.+.+-..          .+.+...+.++                    
T Consensus        30 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~~l~~----------~~~~~~~~~~~--------------------   79 (121)
T d1d7ya2          30 QSRLLIVGGGVIGLELAATARTAGVHVSLVETQPRLMSR----------AAPATLADFVA--------------------   79 (121)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTT----------TSCHHHHHHHH--------------------
T ss_pred             CCeEEEECcchhHHHHHHHhhcccceEEEEeeccccccc----------cCCHHHHHHHH--------------------
Confidence            358999999999999999999999999999998754211          11222222211                    


Q ss_pred             EecCCcEEEeeCCCCCcHHHHhcCCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEEEecCC
Q psy9141          86 HGQNGKLREIPYDPVHNQVELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADG  154 (379)
Q Consensus        86 ~~~~g~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlVV~AdG  154 (379)
                                         ...+..|++++++++|+++..  +.  +.++ ||++   +.||+||.|.|
T Consensus        80 -------------------~~l~~~GV~i~~~~~v~~~~~--~~--v~l~-dg~~---i~~D~vi~a~G  121 (121)
T d1d7ya2          80 -------------------RYHAAQGVDLRFERSVTGSVD--GV--VLLD-DGTR---IAADMVVVGIG  121 (121)
T ss_dssp             -------------------HHHHTTTCEEEESCCEEEEET--TE--EEET-TSCE---EECSEEEECSC
T ss_pred             -------------------HHHHHCCcEEEeCCEEEEEeC--CE--EEEC-CCCE---EECCEEEEeeC
Confidence                               112235889999999988753  33  5567 9988   99999999987

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.93  E-value=8.7e-09  Score=82.75  Aligned_cols=95  Identities=22%  Similarity=0.274  Sum_probs=72.7

Q ss_pred             CcEEEECCChHHHHHHHHHHh----CCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCcee
Q psy9141           7 KSVVIVGGGLVGSLSACMFAK----NQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRA   82 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~----~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~   82 (379)
                      .+++|||||++|+-+|..|++    .|.+|+++|+.+.+-..          .+.......+                  
T Consensus        38 k~i~IvGgG~~G~E~A~~l~~~~~~~g~~Vt~i~~~~~~l~~----------~~~~~~~~~~------------------   89 (137)
T d1m6ia2          38 KSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNMGK----------ILPEYLSNWT------------------   89 (137)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSSTTTT----------TSCHHHHHHH------------------
T ss_pred             CEEEEECCCHHHHHHHHHHHHHHHhcCCEEEEecccccCCcc----------cCCHHHHHHH------------------
Confidence            479999999999999999864    58999999988754211          1222221111                  


Q ss_pred             eEEEecCCcEEEeeCCCCCcHHHHhcCCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEEEecCC
Q psy9141          83 RMIHGQNGKLREIPYDPVHNQVELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADG  154 (379)
Q Consensus        83 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlVV~AdG  154 (379)
                                           ....+..|+++++++.|++++.+++++.+++. ||++   +.||+||.|.|
T Consensus        90 ---------------------~~~l~~~GV~~~~~~~V~~i~~~~~~~~v~l~-~G~~---i~aD~Vi~A~G  136 (137)
T d1m6ia2          90 ---------------------MEKVRREGVKVMPNAIVQSVGVSSGKLLIKLK-DGRK---VETDHIVAAVG  136 (137)
T ss_dssp             ---------------------HHHHHTTTCEEECSCCEEEEEEETTEEEEEET-TSCE---EEESEEEECCC
T ss_pred             ---------------------HHHHHhCCcEEEeCCEEEEEEecCCEEEEEEC-CCCE---EECCEEEEeec
Confidence                                 11122368999999999999999999999999 9988   99999999998

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

Probab=98.90  E-value=1.2e-09  Score=98.40  Aligned_cols=136  Identities=16%  Similarity=0.188  Sum_probs=78.4

Q ss_pred             CCCcEEEECCChHHHHHHHHHHhC-CCcEEEEccCCCCCCCCCCCCccc-ccccCHHHHHHHHHCCChHHHHhCCCCcee
Q psy9141           5 SKKSVVIVGGGLVGSLSACMFAKN-QYEVNLYEAREDIRNSGLSEGKSI-NLALSVRGREALRRIGLEDKLLAHGIPMRA   82 (379)
Q Consensus         5 ~~~dVvIVGaGpaGl~~A~~La~~-G~~V~viE~~~~~~~~~~~~g~~i-~~al~~~~~~~l~~lGl~~~l~~~~~~~~~   82 (379)
                      .++||+||||||+||++|+.|+++ |++|+|+|+.+.+.......+... ...+.......++++|+         .+. 
T Consensus        32 ~e~DViVIGaGpaGL~aA~~LA~~~G~~V~vlE~~~~~GG~~~~~g~~~~~~~~~~~~~~~~~~~g~---------~~~-  101 (278)
T d1rp0a1          32 AETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGGGAWLGGQLFSAMIVRKPAHLFLDEIGV---------AYD-  101 (278)
T ss_dssp             TEEEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSSCCTTTTCCSTTCCCEEEETTTHHHHHHHTC---------CCE-
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHccCCeEEEEecCCCCCCceeecCEEcCHHHHhhhHHHHHHHcCC---------cee-
Confidence            468999999999999999999974 999999999987653211111100 00122233333444332         111 


Q ss_pred             eEEEecCCcEEEeeCCCCCcH-----HHHhcCCCCeEEeCceEEEEEecCCeEE-EEE--c------c---CCceeEEEe
Q psy9141          83 RMIHGQNGKLREIPYDPVHNQ-----VELEQYPDCNIYFQHKLINLDVNSGNVT-FYR--T------E---DNSETKITD  145 (379)
Q Consensus        83 ~~~~~~~g~~~~~~~~~~~~~-----~~~~~~~gv~i~~~~~v~~i~~~~~~v~-v~~--~------~---~G~~~~~i~  145 (379)
                          ..... .  .+......     .......+..+..++.+..+..+++.+. +..  .      .   .....+ ++
T Consensus       102 ----~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~gv~~~~~~~~~~~~~~~~~~~~~-~~  173 (278)
T d1rp0a1         102 ----EQDTY-V--VVKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGNRVGGVVTNWALVAQNHHTQSCMDPNV-ME  173 (278)
T ss_dssp             ----ECSSE-E--EESCHHHHHHHHHHHHHTSTTEEEEETEEEEEEEEETTEEEEEEEEEHHHHTCTTTSSCCCCEE-EE
T ss_pred             ----cCCcc-c--eecccHHHHHHHHHHHHHhCCCEEEeCCcceeeeecCCeEEEEEeccceeeeeeccccccccee-ec
Confidence                00100 0  01110011     2334557888999999999888777654 111  0      0   111123 89


Q ss_pred             ecEEEecCCCChH
Q psy9141         146 NQLIIGADGAYSG  158 (379)
Q Consensus       146 adlVV~AdG~~S~  158 (379)
                      +++||.|+|....
T Consensus       174 a~~vv~a~G~~~~  186 (278)
T d1rp0a1         174 AKIVVSSCGHDGP  186 (278)
T ss_dssp             EEEEEECCCSSST
T ss_pred             cceEEECcCCCcc
Confidence            9999999997643

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=98.88  E-value=2.2e-09  Score=96.31  Aligned_cols=64  Identities=17%  Similarity=0.258  Sum_probs=45.6

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCC---CCC------CcccccccCHHHHHHHHHCCChH
Q psy9141           8 SVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSG---LSE------GKSINLALSVRGREALRRIGLED   71 (379)
Q Consensus         8 dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~---~~~------g~~i~~al~~~~~~~l~~lGl~~   71 (379)
                      +|+||||||+||++|+.|++.|++|+|||+++.+...-   ..+      |...-....+...++++++++..
T Consensus         3 kV~IIGaG~aGL~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~g~~~d~G~~~~~~~~~~~~~~~~~~~~~~   75 (373)
T d1seza1           3 RVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGKAGGKLRSVSQDGLIWDEGANTMTESEGDVTFLIDSLGLRE   75 (373)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTSCEEEEECSSSSSCSSCCEEEETTEEEESSCCCBCCCSHHHHHHHHHTTCGG
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCEEEEeCCCCCcCceEEeccCCEEEecCceEEeCCCHHHHHHHHHhCCcc
Confidence            69999999999999999999999999999988664210   000      11100123466778888887644

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=98.86  E-value=1.3e-08  Score=79.37  Aligned_cols=96  Identities=20%  Similarity=0.222  Sum_probs=70.6

Q ss_pred             CCcEEEECCChHHHHHHHHHHh---CCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCcee
Q psy9141           6 KKSVVIVGGGLVGSLSACMFAK---NQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRA   82 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La~---~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~   82 (379)
                      +.+++|||||++|+-+|..|++   .|.+|+++|+.+..-..           +.+.....+++                
T Consensus        18 p~~v~IiGgG~ig~E~A~~l~~~~~~g~~Vtli~~~~~il~~-----------~d~~~~~~~~~----------------   70 (117)
T d1feca2          18 PKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMILRG-----------FDSELRKQLTE----------------   70 (117)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSSSSTT-----------SCHHHHHHHHH----------------
T ss_pred             CCeEEEECCChHHHHHHHHhHhhcccccccceeccccccccc-----------ccchhhHHHHH----------------
Confidence            3589999999999999987665   48899999988654311           22222222111                


Q ss_pred             eEEEecCCcEEEeeCCCCCcHHHHhcCCCCeEEeCceEEEEEecCCe-EEEEEccCCceeEEEeecEEEecCCC
Q psy9141          83 RMIHGQNGKLREIPYDPVHNQVELEQYPDCNIYFQHKLINLDVNSGN-VTFYRTEDNSETKITDNQLIIGADGA  155 (379)
Q Consensus        83 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~-v~v~~~~~G~~~~~i~adlVV~AdG~  155 (379)
                                            .+. ..|+++++++++++++.++++ ..+.+. +|++   ++||+||.|.||
T Consensus        71 ----------------------~l~-~~GI~v~~~~~v~~i~~~~~g~~~v~~~-~g~~---i~~D~Vi~a~GR  117 (117)
T d1feca2          71 ----------------------QLR-ANGINVRTHENPAKVTKNADGTRHVVFE-SGAE---ADYDVVMLAIGR  117 (117)
T ss_dssp             ----------------------HHH-HTTEEEEETCCEEEEEECTTSCEEEEET-TSCE---EEESEEEECSCE
T ss_pred             ----------------------HHh-hCcEEEEcCCEEEEEEECCCCEEEEEEC-CCCE---EEcCEEEEecCC
Confidence                                  122 258999999999999876654 568888 9988   999999999996

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.85  E-value=1.3e-08  Score=80.05  Aligned_cols=93  Identities=22%  Similarity=0.229  Sum_probs=67.4

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeEE
Q psy9141           6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARMI   85 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~~   85 (379)
                      ..+|+|||||++|+-+|..|++.|.+|+++|+.+.+-.      +    .+.+...+.++                    
T Consensus        30 ~k~vvViGgG~iG~E~A~~l~~~g~~Vtlie~~~~~l~------~----~~d~~~~~~~~--------------------   79 (123)
T d1nhpa2          30 VNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRPLG------V----YLDKEFTDVLT--------------------   79 (123)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTT------T----TCCHHHHHHHH--------------------
T ss_pred             CCEEEEECChHHHHHHHHHhhccceEEEEEEecCcccc------c----ccchhhHHHHH--------------------
Confidence            35899999999999999999999999999999864421      1    12222222111                    


Q ss_pred             EecCCcEEEeeCCCCCcHHHHhcCCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEEEec
Q psy9141          86 HGQNGKLREIPYDPVHNQVELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGA  152 (379)
Q Consensus        86 ~~~~g~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlVV~A  152 (379)
                                         ...+..|+++++++++++++.++ .+...+. ||++   +.||+||.|
T Consensus        80 -------------------~~l~~~gv~~~~~~~v~~i~~~~-~~~~v~~-dg~~---i~~D~vi~a  122 (123)
T d1nhpa2          80 -------------------EEMEANNITIATGETVERYEGDG-RVQKVVT-DKNA---YDADLVVVA  122 (123)
T ss_dssp             -------------------HHHHTTTEEEEESCCEEEEECSS-BCCEEEE-SSCE---EECSEEEEC
T ss_pred             -------------------HHhhcCCeEEEeCceEEEEEcCC-CEEEEEe-CCCE---EECCEEEEE
Confidence                               11223589999999999998654 4443455 8887   999999987

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=98.81  E-value=1.7e-08  Score=78.48  Aligned_cols=95  Identities=19%  Similarity=0.279  Sum_probs=65.7

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeEE
Q psy9141           6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARMI   85 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~~   85 (379)
                      +.+++|||||++|+-+|..|++.|.+|+|+|+.+..-..           +.+...+.+++                   
T Consensus        21 p~~vvIiGgG~~G~E~A~~l~~~g~~Vtlve~~~~il~~-----------~d~~~~~~l~~-------------------   70 (115)
T d1lvla2          21 PQHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERILPT-----------YDSELTAPVAE-------------------   70 (115)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSSTT-----------SCHHHHHHHHH-------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHhhcccceEEEeeecccccc-----------ccchhHHHHHH-------------------
Confidence            358999999999999999999999999999998754211           12222222211                   


Q ss_pred             EecCCcEEEeeCCCCCcHHHHhcCCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEEEecCC
Q psy9141          86 HGQNGKLREIPYDPVHNQVELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADG  154 (379)
Q Consensus        86 ~~~~g~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlVV~AdG  154 (379)
                                         .+. ..|++++++++|++++  ++....... +|...+ ++||.||.|.|
T Consensus        71 -------------------~l~-~~gV~i~~~~~V~~i~--~~~~~~~~~-~~~~~~-i~~D~vi~A~G  115 (115)
T d1lvla2          71 -------------------SLK-KLGIALHLGHSVEGYE--NGCLLANDG-KGGQLR-LEADRVLVAVG  115 (115)
T ss_dssp             -------------------HHH-HHTCEEETTCEEEEEE--TTEEEEECS-SSCCCE-ECCSCEEECCC
T ss_pred             -------------------HHH-hhcceEEcCcEEEEEc--CCeEEEEEc-CCCeEE-EEcCEEEEecC
Confidence                               111 2478899999998885  333333333 444344 99999999988

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=98.80  E-value=2e-08  Score=79.19  Aligned_cols=99  Identities=13%  Similarity=0.226  Sum_probs=73.2

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeEE
Q psy9141           6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARMI   85 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~~   85 (379)
                      .-+++|||||+.|+-+|..+++.|.+|+++|+.+..-..           +.+...+.+.                    
T Consensus        26 p~~vvIiGgG~IG~E~A~~~~~~G~~Vtive~~~~il~~-----------~d~~~~~~l~--------------------   74 (125)
T d1ojta2          26 PGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGLMQG-----------ADRDLVKVWQ--------------------   74 (125)
T ss_dssp             CSEEEEESCSHHHHHHHHHHHHHTCEEEEECSSSSSSTT-----------SCHHHHHHHH--------------------
T ss_pred             CCeEEEECCCHHHHHHHHHhhcCCCEEEEEEeecccccc-----------chhhHHHHHH--------------------
Confidence            358999999999999999999999999999998755311           1222222111                    


Q ss_pred             EecCCcEEEeeCCCCCcHHHHhcCCCCeEEeCceEEEEEecCCeEEEEEcc-CCceeEEEeecEEEecCCC
Q psy9141          86 HGQNGKLREIPYDPVHNQVELEQYPDCNIYFQHKLINLDVNSGNVTFYRTE-DNSETKITDNQLIIGADGA  155 (379)
Q Consensus        86 ~~~~g~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~-~G~~~~~i~adlVV~AdG~  155 (379)
                                         ...+..+++++.++++++++.+++++.+.+.. +|+..+ ++||+|+.|.||
T Consensus        75 -------------------~~l~~~gv~~~~~~~v~~v~~~~~g~~v~~~~~~g~~~~-i~~D~vl~A~GR  125 (125)
T d1ojta2          75 -------------------KQNEYRFDNIMVNTKTVAVEPKEDGVYVTFEGANAPKEP-QRYDAVLVAAGR  125 (125)
T ss_dssp             -------------------HHHGGGEEEEECSCEEEEEEEETTEEEEEEESSSCCSSC-EEESCEEECCCE
T ss_pred             -------------------HHHHHcCcccccCcEEEEEEEcCCcEEEEEEeCCCCeEE-EEcCEEEEecCC
Confidence                               11122578999999999999999988776641 344334 999999999996

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.78  E-value=4.3e-08  Score=76.35  Aligned_cols=92  Identities=14%  Similarity=0.184  Sum_probs=68.6

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeEEE
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARMIH   86 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~   86 (379)
                      ..|+|||||+.|+-+|..|++.|.+|+|+|+.+..-.           .+.+...+.++                     
T Consensus        23 ~~v~IiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~il~-----------~~d~~~~~~~~---------------------   70 (117)
T d1onfa2          23 KKIGIVGSGYIAVELINVIKRLGIDSYIFARGNRILR-----------KFDESVINVLE---------------------   70 (117)
T ss_dssp             SEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSSSCT-----------TSCHHHHHHHH---------------------
T ss_pred             CEEEEECCchHHHHHHHHHHhccccceeeehhccccc-----------cccHHHHHHHH---------------------
Confidence            4799999999999999999999999999999874421           01222211111                     


Q ss_pred             ecCCcEEEeeCCCCCcHHHHhcCCCCeEEeCceEEEEEecC-CeEEEEEccCCceeEEEe-ecEEEec
Q psy9141          87 GQNGKLREIPYDPVHNQVELEQYPDCNIYFQHKLINLDVNS-GNVTFYRTEDNSETKITD-NQLIIGA  152 (379)
Q Consensus        87 ~~~g~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~-~~v~v~~~~~G~~~~~i~-adlVV~A  152 (379)
                                       ..+.+ .|++++++++|++++..+ +.+++++. +|+.   ++ +|.||.|
T Consensus        71 -----------------~~l~~-~gV~i~~~~~v~~i~~~~~~~~~v~~~-~G~~---~~~~D~Vi~A  116 (117)
T d1onfa2          71 -----------------NDMKK-NNINIVTFADVVEIKKVSDKNLSIHLS-DGRI---YEHFDHVIYC  116 (117)
T ss_dssp             -----------------HHHHH-TTCEEECSCCEEEEEESSTTCEEEEET-TSCE---EEEESEEEEC
T ss_pred             -----------------HHHHh-CCCEEEECCEEEEEEEcCCCeEEEEEC-CCCE---EEeCCEEEEe
Confidence                             11222 589999999999998665 46889999 9987   64 6999987

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=98.75  E-value=3.2e-08  Score=77.83  Aligned_cols=96  Identities=17%  Similarity=0.329  Sum_probs=69.9

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeEEE
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARMIH   86 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~   86 (379)
                      -+++|||||+.|+-+|..|++.|.+|+|+|+.+..-..           +.+.....+.                     
T Consensus        26 ~~~viiG~G~iglE~A~~~~~~G~~Vtvi~~~~~~l~~-----------~d~~~~~~l~---------------------   73 (123)
T d1dxla2          26 KKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEIVPT-----------MDAEIRKQFQ---------------------   73 (123)
T ss_dssp             SEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSSSSTT-----------SCHHHHHHHH---------------------
T ss_pred             CeEEEEccchHHHHHHHHHHhcCCeEEEEEEccccCch-----------hhhcchhhhh---------------------
Confidence            48999999999999999999999999999998755311           1222221111                     


Q ss_pred             ecCCcEEEeeCCCCCcHHHHhcCCCCeEEeCceEEEEEecCCeEEEEE--ccCCceeEEEeecEEEecC
Q psy9141          87 GQNGKLREIPYDPVHNQVELEQYPDCNIYFQHKLINLDVNSGNVTFYR--TEDNSETKITDNQLIIGAD  153 (379)
Q Consensus        87 ~~~g~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~--~~~G~~~~~i~adlVV~Ad  153 (379)
                                       ..+. ..|+++++++++++++.+++++++.+  ..+|++.+ ++||+|+.|.
T Consensus        74 -----------------~~l~-~~GI~i~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~-i~~D~vLvAA  123 (123)
T d1dxla2          74 -----------------RSLE-KQGMKFKLKTKVVGVDTSGDGVKLTVEPSAGGEQTI-IEADVVLVSA  123 (123)
T ss_dssp             -----------------HHHH-HSSCCEECSEEEEEEECSSSSEEEEEEESSSCCCEE-EEESEEECCC
T ss_pred             -----------------hhhh-cccceEEcCCceEEEEEccCeEEEEEEECCCCeEEE-EEcCEEEEcC
Confidence                             1122 24789999999999998888766543  32555555 8999998773

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.74  E-value=7.7e-08  Score=75.43  Aligned_cols=96  Identities=19%  Similarity=0.312  Sum_probs=67.9

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeEE
Q psy9141           6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARMI   85 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~~   85 (379)
                      +..++|||||+.|+-+|..|++.|.+|+|+|+.+.+-..           +.+...+.++                    
T Consensus        23 p~~~vIiG~G~ig~E~A~~l~~lG~~Vtii~~~~~~l~~-----------~d~ei~~~l~--------------------   71 (122)
T d1v59a2          23 PKRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQIGAS-----------MDGEVAKATQ--------------------   71 (122)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSSS-----------SCHHHHHHHH--------------------
T ss_pred             CCeEEEECCCchHHHHHHHHHhhCcceeEEEeccccchh-----------hhhhhHHHHH--------------------
Confidence            358999999999999999999999999999998755311           1222222211                    


Q ss_pred             EecCCcEEEeeCCCCCcHHHHhcCCCCeEEeCceEEEEEecCCe--EEEEEc--cCCceeEEEeecEEEec
Q psy9141          86 HGQNGKLREIPYDPVHNQVELEQYPDCNIYFQHKLINLDVNSGN--VTFYRT--EDNSETKITDNQLIIGA  152 (379)
Q Consensus        86 ~~~~g~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~--v~v~~~--~~G~~~~~i~adlVV~A  152 (379)
                                        ..+++ .|++++++++|++++.++++  +.+++.  ..++..+ ++||+|+.|
T Consensus        72 ------------------~~l~~-~GV~i~~~~~v~~v~~~~~~~~v~~~~~~~~~~~~~~-ie~D~vlvA  122 (122)
T d1v59a2          72 ------------------KFLKK-QGLDFKLSTKVISAKRNDDKNVVEIVVEDTKTNKQEN-LEAEVLLVA  122 (122)
T ss_dssp             ------------------HHHHH-TTCEEECSEEEEEEEEETTTTEEEEEEEETTTTEEEE-EEESEEEEC
T ss_pred             ------------------HHHHh-ccceEEeCCEEEEEEEeCCCcEEEEEEEeCCCCCeEE-EEeCEEEEC
Confidence                              11222 48999999999999887654  445544  1234455 999999876

>d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Adenylylsulfate reductase A subunit
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.73  E-value=1.9e-08  Score=93.22  Aligned_cols=37  Identities=30%  Similarity=0.407  Sum_probs=33.4

Q ss_pred             CCcEEEECCChHHHHHHHHHHh----CCCcEEEEccCCCCC
Q psy9141           6 KKSVVIVGGGLVGSLSACMFAK----NQYEVNLYEAREDIR   42 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La~----~G~~V~viE~~~~~~   42 (379)
                      ++||+|||+|++||++|+.|++    +|.+|+||||.+...
T Consensus        21 e~DVlIIG~G~AGl~AA~~aa~~~~~~G~~V~vieK~~~~g   61 (356)
T d1jnra2          21 ETDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAAVER   61 (356)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHHTTTTCCEEEECSSCTTT
T ss_pred             ecCEEEECCCHHHHHHHHHHHHHHHhCcCEEEEEeCCCCCC
Confidence            5899999999999999999985    699999999987654

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=98.72  E-value=8.3e-09  Score=90.79  Aligned_cols=41  Identities=29%  Similarity=0.503  Sum_probs=35.5

Q ss_pred             CCCCCCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCC
Q psy9141           1 MKCNSKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDI   41 (379)
Q Consensus         1 M~~m~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~   41 (379)
                      |++.++.+|+|||||++||++|+.|+++|++|+||||....
T Consensus         1 ~~~~~~~kVvVIGaGiaGl~~A~~L~~~G~~V~vier~~~~   41 (268)
T d1c0pa1           1 LMMHSQKRVVVLGSGVIGLSSALILARKGYSVHILARDLPE   41 (268)
T ss_dssp             CCCCCSCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSCTT
T ss_pred             CCCCCCCcEEEECccHHHHHHHHHHHHCCCCEEEEeCCCCC
Confidence            33345679999999999999999999999999999998643

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=98.70  E-value=5.6e-09  Score=90.36  Aligned_cols=38  Identities=24%  Similarity=0.275  Sum_probs=35.2

Q ss_pred             CCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCC
Q psy9141           5 SKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIR   42 (379)
Q Consensus         5 ~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~   42 (379)
                      ++|||+||||||||+++|+.++|.|++|+|||+.....
T Consensus         2 ~kYDviIIGgGpAGl~aA~~aar~G~~V~viE~~~~~~   39 (229)
T d3lada1           2 QKFDVIVIGAGPGGYVAAIKSAQLGLKTALIEKYKGKE   39 (229)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHHTCCEEEEECCBCTT
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCCeEEEEecccCCC
Confidence            58999999999999999999999999999999987554

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.68  E-value=1.7e-07  Score=73.67  Aligned_cols=97  Identities=13%  Similarity=0.109  Sum_probs=69.3

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeEEE
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARMIH   86 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~   86 (379)
                      .+|+|||||+.|+-+|..|++.|.+|+|+|+.+..-..           +.+...+.+.                     
T Consensus        23 k~vvIvGgG~iG~E~A~~l~~~G~~Vtlv~~~~~~l~~-----------~d~~~~~~~~---------------------   70 (125)
T d3grsa2          23 GRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKVLRS-----------FDSMISTNCT---------------------   70 (125)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTT-----------SCHHHHHHHH---------------------
T ss_pred             CEEEEEcCCccHHHHHHHHhcCCcEEEEEeeccccccc-----------hhhHHHHHHH---------------------
Confidence            48999999999999999999999999999998744211           1122111110                     


Q ss_pred             ecCCcEEEeeCCCCCcHHHHhcCCCCeEEeCceEEEEEecCCeEEEEEc--cCCc----eeEEEeecEEEecCC
Q psy9141          87 GQNGKLREIPYDPVHNQVELEQYPDCNIYFQHKLINLDVNSGNVTFYRT--EDNS----ETKITDNQLIIGADG  154 (379)
Q Consensus        87 ~~~g~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~--~~G~----~~~~i~adlVV~AdG  154 (379)
                                       ..+ +..|+++++++++++++.+++++.+...  .+|.    ... +++|+||.|.|
T Consensus        71 -----------------~~l-~~~Gv~i~~~~~v~~i~~~~~g~~v~~~~~~~g~~~~~~~~-~~~D~vl~a~G  125 (125)
T d3grsa2          71 -----------------EEL-ENAGVEVLKFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMI-PDVDCLLWAIG  125 (125)
T ss_dssp             -----------------HHH-HHTTCEEETTEEEEEEEEETTEEEEEEEECCTTSCCEEEEE-EEESEEEECSC
T ss_pred             -----------------HHH-HHCCCEEEeCCEEEEEEEcCCeEEEEEEEccCCcCcCcccc-ccCCEEEEEeC
Confidence                             112 2258999999999999998888765432  1332    123 78999999987

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=98.68  E-value=2.3e-07  Score=72.36  Aligned_cols=96  Identities=15%  Similarity=0.196  Sum_probs=67.6

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeEEE
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARMIH   86 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~   86 (379)
                      ..|+|||||++|+-+|..|++.|.+|+++|+.+.....           +.+...+.+++                    
T Consensus        23 ~~vvVvGgG~ig~E~A~~l~~~g~~vt~i~~~~~~l~~-----------~d~~~~~~~~~--------------------   71 (121)
T d1mo9a2          23 STVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPLKLI-----------KDNETRAYVLD--------------------   71 (121)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTTTC-----------CSHHHHHHHHH--------------------
T ss_pred             CEEEEECCCHHHHHHHHHHHhcchhheEeeccchhhcc-----------cccchhhhhhh--------------------
Confidence            58999999999999999999999999999998754311           22222222111                    


Q ss_pred             ecCCcEEEeeCCCCCcHHHHhcCCCCeEEeCceEEEEEecCCeEE--E-EEccCCceeEEEeecEEEecCC
Q psy9141          87 GQNGKLREIPYDPVHNQVELEQYPDCNIYFQHKLINLDVNSGNVT--F-YRTEDNSETKITDNQLIIGADG  154 (379)
Q Consensus        87 ~~~g~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~v~--v-~~~~~G~~~~~i~adlVV~AdG  154 (379)
                                         ..+..++++++++++++++.++++..  + ... .+...+ ++||+||.|.|
T Consensus        72 -------------------~l~~~gI~v~~~~~v~~i~~~~~~~~~~~~~~~-~~~~~~-i~~D~Vi~a~G  121 (121)
T d1mo9a2          72 -------------------RMKEQGMEIISGSNVTRIEEDANGRVQAVVAMT-PNGEMR-IETDFVFLGLG  121 (121)
T ss_dssp             -------------------HHHHTTCEEESSCEEEEEEECTTSBEEEEEEEE-TTEEEE-EECSCEEECCC
T ss_pred             -------------------hhhccccEEEcCCEEEEEEecCCceEEEEEEEe-CCCCEE-EEcCEEEEEEC
Confidence                               11124789999999999998775322  2 122 333344 99999999987

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=98.67  E-value=1.4e-07  Score=73.33  Aligned_cols=92  Identities=22%  Similarity=0.270  Sum_probs=67.1

Q ss_pred             CcEEEECCChHHHHHHHHHHhC---CCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceee
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKN---QYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRAR   83 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~---G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~   83 (379)
                      .+++|||||++|+-+|..|++.   |.+|+|+|+.+..-..           +.+...+.++                  
T Consensus        21 ~~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~~~~iL~~-----------~d~~~~~~l~------------------   71 (117)
T d1aoga2          21 RRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGEMILRG-----------FDHTLREELT------------------   71 (117)
T ss_dssp             SEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSSSTT-----------SCHHHHHHHH------------------
T ss_pred             CeEEEECCcHHHHHHHHHhhhcccCCcEEEEEeccchhhcc-----------cchHHHHHHH------------------
Confidence            5899999999999999877655   4579999987654211           1222222211                  


Q ss_pred             EEEecCCcEEEeeCCCCCcHHHHhcCCCCeEEeCceEEEEEecCC-eEEEEEccCCceeEEEeecEEEec
Q psy9141          84 MIHGQNGKLREIPYDPVHNQVELEQYPDCNIYFQHKLINLDVNSG-NVTFYRTEDNSETKITDNQLIIGA  152 (379)
Q Consensus        84 ~~~~~~g~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~-~v~v~~~~~G~~~~~i~adlVV~A  152 (379)
                                          ..+.+ .|+++++++++++++..++ .++++++ +|++   ++||.||.|
T Consensus        72 --------------------~~l~~-~GV~v~~~~~v~~ie~~~~~~~~v~~~-~G~~---i~~D~Vi~A  116 (117)
T d1aoga2          72 --------------------KQLTA-NGIQILTKENPAKVELNADGSKSVTFE-SGKK---MDFDLVMMA  116 (117)
T ss_dssp             --------------------HHHHH-TTCEEEESCCEEEEEECTTSCEEEEET-TSCE---EEESEEEEC
T ss_pred             --------------------HHHHh-cCcEEEcCCEEEEEEEcCCCeEEEEEC-CCcE---EEeCEEEEe
Confidence                                11222 5899999999999987654 6788999 9988   999999976

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=98.65  E-value=5.3e-08  Score=76.38  Aligned_cols=89  Identities=21%  Similarity=0.331  Sum_probs=64.5

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeEEE
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARMIH   86 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~   86 (379)
                      .+|+|||||++|+-+|..|++.|.+|+|+|+.+...            .+.+...+.+.                     
T Consensus        33 ~~vvIiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~l~------------~~d~~~~~~~~---------------------   79 (122)
T d1xhca2          33 GEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAMFL------------GLDEELSNMIK---------------------   79 (122)
T ss_dssp             SEEEEEECSHHHHHHHHHHHHTTCEEEEECSSSCCT------------TCCHHHHHHHH---------------------
T ss_pred             CcEEEECCcHHHHHHHHHhhcccceEEEEecccccc------------CCCHHHHHHHH---------------------
Confidence            479999999999999999999999999999886442            12222222221                     


Q ss_pred             ecCCcEEEeeCCCCCcHHHHhcCCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEEEecCCC
Q psy9141          87 GQNGKLREIPYDPVHNQVELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGA  155 (379)
Q Consensus        87 ~~~g~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlVV~AdG~  155 (379)
                                       ..+.+ .|+++++++++++++.+  ++   +. +++.   +++|+||.|.|.
T Consensus        80 -----------------~~l~~-~GV~~~~~~~v~~~~~~--~v---~~-~~~~---i~~D~vi~a~Gv  121 (122)
T d1xhca2          80 -----------------DMLEE-TGVKFFLNSELLEANEE--GV---LT-NSGF---IEGKVKICAIGI  121 (122)
T ss_dssp             -----------------HHHHH-TTEEEECSCCEEEECSS--EE---EE-TTEE---EECSCEEEECCE
T ss_pred             -----------------HHHHH-CCcEEEeCCEEEEEeCC--EE---Ee-CCCE---EECCEEEEEEEe
Confidence                             11222 48889999999887543  32   34 7776   999999999984

>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.65  E-value=1.8e-08  Score=87.07  Aligned_cols=128  Identities=17%  Similarity=0.194  Sum_probs=74.7

Q ss_pred             CCCcEEEECCChHHHHHHHHHHhCCC--cEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCcee
Q psy9141           5 SKKSVVIVGGGLVGSLSACMFAKNQY--EVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRA   82 (379)
Q Consensus         5 ~~~dVvIVGaGpaGl~~A~~La~~G~--~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~   82 (379)
                      ++++++|||||++|+.+|..|.+.|.  +|+++++.+.....     |.   .|+..   ++..... ..       ...
T Consensus         3 ~~~~~vIvG~G~aG~~~A~~Lr~~~~~~~I~li~~e~~~py~-----r~---~Ls~~---~~~~~~~-~~-------~~~   63 (213)
T d1m6ia1           3 SHVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPELPYM-----RP---PLSKE---LWFSDDP-NV-------TKT   63 (213)
T ss_dssp             SEEEEEEESCSHHHHHHHHHHHHHSTTCEEEEEESSSSCCBC-----SG---GGGTG---GGCC--C-TH-------HHH
T ss_pred             CCCCEEEECCcHHHHHHHHHHHhcCCCCcEEEEeCCCCCCcc-----cc---cccee---cccccCc-hh-------hhh
Confidence            46789999999999999999998876  69999987654211     10   01100   0000000 00       000


Q ss_pred             eEEEecCCcEEEeeCCC-----CCcHHHHhcCCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEEEecCCCCh
Q psy9141          83 RMIHGQNGKLREIPYDP-----VHNQVELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAYS  157 (379)
Q Consensus        83 ~~~~~~~g~~~~~~~~~-----~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlVV~AdG~~S  157 (379)
                      ..+....+......+..     ........+..+++++++++|++|+.++..  |+++ ||++   +.+|.||.|+|...
T Consensus        64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gI~~~~g~~V~~id~~~~~--V~l~-dG~~---i~~d~lViAtG~~~  137 (213)
T d1m6ia1          64 LRFKQWNGKERSIYFQPPSFYVSAQDLPHIENGGVAVLTGKKVVQLDVRDNM--VKLN-DGSQ---ITYEKCLIATGGTE  137 (213)
T ss_dssp             CEEECTTSCEEESBSSCGGGSBCTTTTTTSTTCEEEEEETCCEEEEEGGGTE--EEET-TSCE---EEEEEEEECCCEEE
T ss_pred             hhhhhcccchhhhhcCChhhhhhhhhHHHHHHCCeEEEeCCEEEEeeccCce--eeec-ccee---eccceEEEeeeeec
Confidence            11111111111111100     000022234568999999999999877765  4567 9998   99999999999643

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=98.62  E-value=1.5e-08  Score=85.06  Aligned_cols=38  Identities=32%  Similarity=0.441  Sum_probs=35.1

Q ss_pred             CCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCC
Q psy9141           5 SKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIR   42 (379)
Q Consensus         5 ~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~   42 (379)
                      ++.+|+||||||+||++|+.|+++|++|+|+|+.+.+.
T Consensus        42 ~~k~V~IIGaGPAGL~AA~~la~~G~~Vtl~E~~~~~G   79 (179)
T d1ps9a3          42 QKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEIG   79 (179)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSC
T ss_pred             CCcEEEEECccHHHHHHHHHHHhhccceEEEeccCccC
Confidence            35799999999999999999999999999999998764

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=98.59  E-value=1.3e-08  Score=88.69  Aligned_cols=37  Identities=27%  Similarity=0.388  Sum_probs=34.3

Q ss_pred             CCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCC
Q psy9141           5 SKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDI   41 (379)
Q Consensus         5 ~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~   41 (379)
                      .+|||+||||||+||++|..|++.|++|+|||+.+..
T Consensus         5 ~dyDviIIG~GPaGlsaA~~aa~~G~~V~viE~~~~~   41 (229)
T d1ojta1           5 AEYDVVVLGGGPGGYSAAFAAADEGLKVAIVERYKTL   41 (229)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSCS
T ss_pred             CccCEEEECcCHHHHHHHHHHHHCCCeEEEEeccCCC
Confidence            3699999999999999999999999999999998654

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.58  E-value=1.2e-08  Score=88.59  Aligned_cols=37  Identities=30%  Similarity=0.464  Sum_probs=34.4

Q ss_pred             CCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCC
Q psy9141           5 SKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDI   41 (379)
Q Consensus         5 ~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~   41 (379)
                      ++|||+||||||+|+++|..+++.|.+|+|||+.+..
T Consensus         4 ~~yDviVIG~GpAGl~aA~~aa~~G~kV~lie~~~~~   40 (233)
T d1v59a1           4 KSHDVVIIGGGPAGYVAAIKAAQLGFNTACVEKRGKL   40 (233)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSS
T ss_pred             cccCEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCc
Confidence            5799999999999999999999999999999987654

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=98.58  E-value=1.9e-08  Score=86.77  Aligned_cols=37  Identities=30%  Similarity=0.455  Sum_probs=34.6

Q ss_pred             CCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCC
Q psy9141           5 SKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDI   41 (379)
Q Consensus         5 ~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~   41 (379)
                      .+|||+||||||+|+++|+.+++.|.+|+|||+.+..
T Consensus         2 ~~yDvvVIGgGpaGl~aA~~aa~~G~kV~vie~~~~~   38 (221)
T d1dxla1           2 DENDVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRGAL   38 (221)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSS
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCC
Confidence            4799999999999999999999999999999998755

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.58  E-value=1.9e-08  Score=91.16  Aligned_cols=38  Identities=29%  Similarity=0.476  Sum_probs=35.2

Q ss_pred             CCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCC
Q psy9141           5 SKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIR   42 (379)
Q Consensus         5 ~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~   42 (379)
                      ++.+|+|||||++||++|+.|+++|++|+|+|+++.+.
T Consensus         4 ~~~kViVIGaG~aGL~aA~~L~~~G~~V~VlEa~~r~G   41 (449)
T d2dw4a2           4 KTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVG   41 (449)
T ss_dssp             CCCEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSSSB
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCc
Confidence            46789999999999999999999999999999998664

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=98.57  E-value=1.4e-08  Score=87.50  Aligned_cols=35  Identities=29%  Similarity=0.291  Sum_probs=32.9

Q ss_pred             CCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCC
Q psy9141           5 SKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEARE   39 (379)
Q Consensus         5 ~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~   39 (379)
                      ++|||+||||||+|+++|..+++.|.+|+|||+..
T Consensus         1 k~yDvvVIG~G~aG~~aA~~a~~~G~kV~iiE~~~   35 (217)
T d1gesa1           1 KHYDYIAIGGGSGGIASINRAAMYGQKCALIEAKE   35 (217)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHTTTCCEEEEESSC
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCEEEEEeccC
Confidence            46999999999999999999999999999999864

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.54  E-value=2.1e-07  Score=78.95  Aligned_cols=112  Identities=16%  Similarity=0.194  Sum_probs=74.2

Q ss_pred             cEEEECCChHHHHHHHHHHhC--CCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeEE
Q psy9141           8 SVVIVGGGLVGSLSACMFAKN--QYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARMI   85 (379)
Q Consensus         8 dVvIVGaGpaGl~~A~~La~~--G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~~   85 (379)
                      +|+|||||++|+.+|..|++.  +.+|+++|+.+.....    .         .....+        +........    
T Consensus         2 KVvIIGgG~~G~e~A~~l~~~~~~~~V~v~~~~~~~~~~----~---------~~~~~~--------l~~~~~~~~----   56 (198)
T d1nhpa1           2 KVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFISFL----S---------AGMQLY--------LEGKVKDVN----   56 (198)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSSSSSBC----G---------GGHHHH--------HTTSSCCGG----
T ss_pred             EEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCCccccc----c---------cCcchh--------hcccccchH----
Confidence            499999999999999999987  4589999988655311    1         111111        000000000    


Q ss_pred             EecCCcEEEeeCCCCCcHHHHhcCCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEEEecCCCCh
Q psy9141          86 HGQNGKLREIPYDPVHNQVELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAYS  157 (379)
Q Consensus        86 ~~~~g~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlVV~AdG~~S  157 (379)
                           .   +.+ .  ....+. ..|++++++++|++++.+++.+++....+|++.+ +.+|.+|.|.|...
T Consensus        57 -----~---~~~-~--~~~~l~-~~gi~v~~~~~V~~i~~~~~~v~~~~~~~g~~~~-~~~D~li~a~G~~~  115 (198)
T d1nhpa1          57 -----S---VRY-M--TGEKME-SRGVNVFSNTEITAIQPKEHQVTVKDLVSGEERV-ENYDKLIISPGAVP  115 (198)
T ss_dssp             -----G---SBS-C--CHHHHH-HTTCEEEETEEEEEEETTTTEEEEEETTTCCEEE-EECSEEEECCCEEE
T ss_pred             -----H---HHH-h--hHHHHH-HCCcEEEEeeceeeEeeccccceeeecccccccc-cccceeeEeeccee
Confidence                 0   000 0  012233 3699999999999999988898887543777666 89999999999753

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.52  E-value=2.4e-08  Score=87.16  Aligned_cols=36  Identities=25%  Similarity=0.245  Sum_probs=34.0

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCC
Q psy9141           6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDI   41 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~   41 (379)
                      +|||+||||||+|+++|+.+++.|++|+|+|+.+..
T Consensus         3 dYDviVIG~GpaGl~aA~~aa~~G~kV~viE~~~~~   38 (235)
T d1h6va1           3 DFDLIIIGGGSGGLAAAKEAAKFDKKVMVLDFVTPT   38 (235)
T ss_dssp             SEEEEEECCSHHHHHHHHHHGGGCCCEEEECCCCCC
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCC
Confidence            699999999999999999999999999999988754

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=98.51  E-value=2.9e-08  Score=83.13  Aligned_cols=32  Identities=31%  Similarity=0.428  Sum_probs=31.1

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEccC
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEAR   38 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~   38 (379)
                      |||+||||||+|+.+|+.+++.|.+|+|||++
T Consensus         2 yDViIIGgGpaGl~AAi~aar~G~~v~iie~~   33 (184)
T d1fl2a1           2 YDVLIVGSGPAGAAAAIYSARKGIRTGLMGER   33 (184)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTTCCEEEECSS
T ss_pred             CcEEEECcCHHHHHHHHHHHHcCCeEEEEEEe
Confidence            89999999999999999999999999999975

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.51  E-value=8e-07  Score=69.40  Aligned_cols=96  Identities=13%  Similarity=0.103  Sum_probs=64.4

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeEEE
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARMIH   86 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~   86 (379)
                      -+++|||||+.|+-+|..|++.|.+|+|+++++...            .+.+.....+                      
T Consensus        21 ~~vvIIGgG~iG~E~A~~l~~lG~~Vtii~~~~~l~------------~~D~~~~~~l----------------------   66 (122)
T d1h6va2          21 GKTLVVGASYVALECAGFLAGIGLDVTVMVRSILLR------------GFDQDMANKI----------------------   66 (122)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSST------------TSCHHHHHHH----------------------
T ss_pred             CeEEEECCCccHHHHHHHHhhcCCeEEEEEechhhc------------cCCHHHHHHH----------------------
Confidence            489999999999999999999999999999753221            0112111111                      


Q ss_pred             ecCCcEEEeeCCCCCcHHHHhcCCCCeEEeCceEEEEEecC----CeEEEEEcc--CCceeEEEeecEEEecCC
Q psy9141          87 GQNGKLREIPYDPVHNQVELEQYPDCNIYFQHKLINLDVNS----GNVTFYRTE--DNSETKITDNQLIIGADG  154 (379)
Q Consensus        87 ~~~g~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~----~~v~v~~~~--~G~~~~~i~adlVV~AdG  154 (379)
                                       ....+..|+++++++.|++++..+    ..+.++...  +++..+ +++|.|+.|.|
T Consensus        67 -----------------~~~l~~~Gv~i~~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~D~vl~AiG  122 (122)
T d1h6va2          67 -----------------GEHMEEHGIKFIRQFVPTKIEQIEAGTPGRLKVTAKSTNSEETIE-DEFNTVLLAVG  122 (122)
T ss_dssp             -----------------HHHHHHTTEEEEESCEEEEEEEEECSTTCEEEEEEECTTSCEEEE-EEESEEECCCC
T ss_pred             -----------------HHHHHHCCCEEEECCEEEEEEEecCCCccEEEEEEEECCCCcEEE-EECCEEEEEeC
Confidence                             111222589999999999887543    245555441  233334 68999999987

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.48  E-value=4.4e-08  Score=84.37  Aligned_cols=35  Identities=23%  Similarity=0.258  Sum_probs=33.0

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCC
Q psy9141           6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEARED   40 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~   40 (379)
                      +|||+||||||+|+++|..+++.|.+|+|||+...
T Consensus         3 ~~DviVIG~GpaGl~aA~~aar~G~kV~vIEk~~~   37 (223)
T d1ebda1           3 ETETLVVGAGPGGYVAAIRAAQLGQKVTIVEKGNL   37 (223)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTCCEEEEESSCT
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCEEEEEecCCC
Confidence            58999999999999999999999999999998753

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.47  E-value=4.2e-08  Score=84.61  Aligned_cols=35  Identities=23%  Similarity=0.263  Sum_probs=33.0

Q ss_pred             CCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCC
Q psy9141           5 SKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEARE   39 (379)
Q Consensus         5 ~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~   39 (379)
                      .+|||+||||||+|+.+|..+++.|.+|+|||+..
T Consensus         2 ~~yDviIIG~GpaG~~aA~~aar~G~kV~vIEk~~   36 (221)
T d3grsa1           2 ASYDYLVIGGGSGGLASARRAAELGARAAVVESHK   36 (221)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             CccCEEEECCCHHHHHHHHHHHHCCCEEEEEeccC
Confidence            36999999999999999999999999999999865

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.46  E-value=4.4e-08  Score=89.04  Aligned_cols=36  Identities=33%  Similarity=0.455  Sum_probs=34.0

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCC
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIR   42 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~   42 (379)
                      +||+|||||++||++|..|++.|++|+|+|+++.++
T Consensus         2 ~dv~IIGaG~sGl~~A~~L~~~g~~V~iiEk~~~iG   37 (298)
T d1i8ta1           2 YDYIIVGSGLFGAVCANELKKLNKKVLVIEKRNHIG   37 (298)
T ss_dssp             EEEEEECCSHHHHHHHHHHGGGTCCEEEECSSSSSS
T ss_pred             ccEEEECCcHHHHHHHHHHHhCCCcEEEEECCCCcc
Confidence            599999999999999999999999999999998765

>d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Penicillium amagasakiense [TaxId: 63559]

Probab=98.43  E-value=3.2e-07  Score=86.41  Aligned_cols=37  Identities=27%  Similarity=0.311  Sum_probs=33.6

Q ss_pred             CCCcEEEECCChHHHHHHHHHHhCC-CcEEEEccCCCC
Q psy9141           5 SKKSVVIVGGGLVGSLSACMFAKNQ-YEVNLYEAREDI   41 (379)
Q Consensus         5 ~~~dVvIVGaGpaGl~~A~~La~~G-~~V~viE~~~~~   41 (379)
                      ++||+||||||++|+.+|..|++.| ++|+|||+.+..
T Consensus        23 ~tyD~IIVGsG~aG~vlA~rLae~~~~~VLlLEaG~~~   60 (391)
T d1gpea1          23 KTYDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFYE   60 (391)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHTSTTCCEEEEESSCCC
T ss_pred             CeeeEEEECcCHHHHHHHHHHHHCCCCeEEEEcCCCCC
Confidence            3599999999999999999999998 799999999743

>d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus niger [TaxId: 5061]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Aspergillus niger [TaxId: 5061]

Probab=98.42  E-value=1.3e-06  Score=81.92  Aligned_cols=35  Identities=29%  Similarity=0.447  Sum_probs=32.2

Q ss_pred             CCCcEEEECCChHHHHHHHHHHhCC-CcEEEEccCC
Q psy9141           5 SKKSVVIVGGGLVGSLSACMFAKNQ-YEVNLYEARE   39 (379)
Q Consensus         5 ~~~dVvIVGaGpaGl~~A~~La~~G-~~V~viE~~~   39 (379)
                      ++||+||||||.+|+.+|..|++.+ ++|+|||+.+
T Consensus        16 ~tyD~IIVGsG~aG~vlA~rLse~~~~~VLvLEaG~   51 (385)
T d1cf3a1          16 RTVDYIIAGGGLTGLTTAARLTENPNISVLVIESGS   51 (385)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHTTSTTCCEEEEESSC
T ss_pred             CeEEEEEECcCHHHHHHHHHHHHCCCCeEEEECCCC
Confidence            3599999999999999999999976 8999999986

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.39  E-value=1.3e-07  Score=79.60  Aligned_cols=36  Identities=19%  Similarity=0.473  Sum_probs=32.7

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCc-EEEEccCCCC
Q psy9141           6 KKSVVIVGGGLVGSLSACMFAKNQYE-VNLYEAREDI   41 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La~~G~~-V~viE~~~~~   41 (379)
                      ..+|+||||||+||.+|..|+++|++ |+|+||.+..
T Consensus         4 ~~kVaIIGaGpaGl~aA~~l~~~G~~~V~v~E~~~~~   40 (196)
T d1gtea4           4 SAKIALLGAGPASISCASFLARLGYSDITIFEKQEYV   40 (196)
T ss_dssp             GCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSC
T ss_pred             CCEEEEECChHHHHHHHHHHHHCCCCeEEEEEecCcc
Confidence            35899999999999999999999995 9999998755

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.39  E-value=5.8e-08  Score=84.44  Aligned_cols=37  Identities=22%  Similarity=0.239  Sum_probs=33.2

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCC-------CcEEEEccCCCCC
Q psy9141           6 KKSVVIVGGGLVGSLSACMFAKNQ-------YEVNLYEAREDIR   42 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La~~G-------~~V~viE~~~~~~   42 (379)
                      +++|+|||||||||++|+.|+++|       ++|+|+|+.+.+.
T Consensus         2 p~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~~~G   45 (239)
T d1lqta2           2 PYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPW   45 (239)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSCS
T ss_pred             CcEEEEECcCHHHHHHHHHHHHcCCccccCCCceEEEecCCCCC
Confidence            578999999999999999999988       4799999998663

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=98.36  E-value=1e-07  Score=82.26  Aligned_cols=35  Identities=23%  Similarity=0.327  Sum_probs=32.9

Q ss_pred             CCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCC
Q psy9141           5 SKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEARE   39 (379)
Q Consensus         5 ~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~   39 (379)
                      .+||++||||||+|+.+|..+++.|.+|+|+|+..
T Consensus         4 ~~~DlvVIG~GpaGl~aA~~aa~~G~~V~liE~~~   38 (220)
T d1lvla1           4 IQTTLLIIGGGPGGYVAAIRAGQLGIPTVLVEGQA   38 (220)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHHTCCEEEECSSC
T ss_pred             cccCEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Confidence            46999999999999999999999999999999874

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=98.35  E-value=8.8e-08  Score=80.79  Aligned_cols=106  Identities=19%  Similarity=0.224  Sum_probs=66.7

Q ss_pred             CCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeE
Q psy9141           5 SKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARM   84 (379)
Q Consensus         5 ~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~   84 (379)
                      ++.||+||||||+||.+|+.|+|.|.+|+|||+.+..       +...   .                    ...+.   
T Consensus         4 k~~dVvIIGGGpaGl~AA~~~ar~g~~v~iie~~~~~-------g~~~---~--------------------~~~i~---   50 (190)
T d1trba1           4 KHSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKG-------GQLT---T--------------------TTEVE---   50 (190)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHTTTCCCEEECCSSTT-------GGGG---G--------------------CSBCC---
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEEeeccc-------cccc---c--------------------cchhh---
Confidence            4579999999999999999999999999999987532       1100   0                    00000   


Q ss_pred             EEecCCcEEEeeCCCCCcH------HHHhcCCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEEEecCCCC
Q psy9141          85 IHGQNGKLREIPYDPVHNQ------VELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAY  156 (379)
Q Consensus        85 ~~~~~g~~~~~~~~~~~~~------~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlVV~AdG~~  156 (379)
                        +..+    ++.... ..      .......++.+..+ +|+.+...++...+... ++.    +.++.+|.|.|..
T Consensus        51 --~~~~----~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~V~~~~~~~~~~~v~~~-~~~----~~~~~viva~G~~  115 (190)
T d1trba1          51 --NWPG----DPNDLT-GPLLMERMHEHATKFETEIIFD-HINKVDLQNRPFRLNGD-NGE----YTCDALIIATGAS  115 (190)
T ss_dssp             --CSTT----CCSSCB-HHHHHHHHHHHHHHTTCEEECC-CEEEEECSSSSEEEEES-SCE----EEEEEEEECCCEE
T ss_pred             --hhhc----cccccc-hHHHHHHHHHHHHhcCcEEecc-eeEEEecCCCcEEEEEe-eee----Eeeeeeeeeccee
Confidence              0000    000000 10      11122246677655 68888888877777765 443    8899999999964

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.34  E-value=7.6e-08  Score=81.47  Aligned_cols=110  Identities=15%  Similarity=0.179  Sum_probs=68.1

Q ss_pred             CCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeE
Q psy9141           5 SKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARM   84 (379)
Q Consensus         5 ~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~   84 (379)
                      .++||+||||||+|+.+|+.|+|.|++|+|+|+.......  ..+...                      ..      ..
T Consensus         4 ~~~~VvIIGgGpaGl~aA~~~ar~g~~v~vie~~~~~~~~--~~~~~~----------------------~~------~~   53 (192)
T d1vdca1           4 HNTRLCIVGSGPAAHTAAIYAARAELKPLLFEGWMANDIA--PGGQLT----------------------TT------TD   53 (192)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBC--TTCGGG----------------------GC------SE
T ss_pred             ccceEEEECCCHHHHHHHHHHHHcCCcEEEEEeecccccc--cccccc----------------------cc------hh
Confidence            3589999999999999999999999999999987654321  011100                      00      00


Q ss_pred             EEecCCcEEEeeCCCCC-cH------HHHhcCCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEEEecCCCC
Q psy9141          85 IHGQNGKLREIPYDPVH-NQ------VELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAY  156 (379)
Q Consensus        85 ~~~~~g~~~~~~~~~~~-~~------~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlVV~AdG~~  156 (379)
                      ..+..+      +.... +.      .......++++..+ .|++++..++...+...  ...   ..+|.++.+.|..
T Consensus        54 ~~~~~~------~~~~~~~~el~~~~~~q~~~~g~~i~~~-~V~~~~~~~~~~~v~~~--~~~---~~~~~~~~a~g~~  120 (192)
T d1vdca1          54 VENFPG------FPEGILGVELTDKFRKQSERFGTTIFTE-TVTKVDFSSKPFKLFTD--SKA---ILADAVILAIGAV  120 (192)
T ss_dssp             ECCSTT------CTTCEEHHHHHHHHHHHHHHTTCEEECC-CCCEEECSSSSEEEECS--SEE---EEEEEEEECCCEE
T ss_pred             hhcccc------ccccccchHHHHHHHHHHHhhcceeeee-eEEecccccCcEEeccc--cee---eeeeeEEEEeeee
Confidence            000000      00000 00      11122347888766 68888877777666643  333   7899999999874

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

Probab=98.32  E-value=1.8e-07  Score=86.57  Aligned_cols=37  Identities=32%  Similarity=0.422  Sum_probs=34.1

Q ss_pred             CCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCC
Q psy9141           5 SKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDI   41 (379)
Q Consensus         5 ~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~   41 (379)
                      .+|||||||+|++|+.+|..|++.|++|+|||+....
T Consensus         3 ~~yDviIVGsG~aG~v~A~~La~~G~kVlvLEaG~~~   39 (379)
T d2f5va1           3 IKYDVVIVGSGPIGCTYARELVGAGYKVAMFDIGEID   39 (379)
T ss_dssp             SEEEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCC
T ss_pred             CcccEEEECcCHHHHHHHHHHhhCCCeEEEEecCCCC
Confidence            4699999999999999999999999999999997643

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=98.31  E-value=2.3e-07  Score=84.85  Aligned_cols=36  Identities=28%  Similarity=0.558  Sum_probs=34.0

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCC
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIR   42 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~   42 (379)
                      ..|+|||||++||++|+.|++.|++|+|+|+++..+
T Consensus         3 KKI~IIGaG~sGL~aA~~L~k~G~~V~viEk~~~iG   38 (314)
T d2bi7a1           3 KKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIG   38 (314)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSS
T ss_pred             CEEEEECCcHHHHHHHHHHHhCCCCEEEEECCCCCc
Confidence            479999999999999999999999999999999775

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=98.29  E-value=3.8e-07  Score=79.48  Aligned_cols=38  Identities=39%  Similarity=0.573  Sum_probs=34.9

Q ss_pred             CCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCC
Q psy9141           5 SKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIR   42 (379)
Q Consensus         5 ~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~   42 (379)
                      ...+|+||||||+|+++|..|+++|++|+|+|+.+...
T Consensus        48 ~~k~VvIIGaGpAGl~aA~~l~~~G~~v~l~E~~~~~G   85 (233)
T d1djqa3          48 NKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEKIG   85 (233)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTT
T ss_pred             CCceEEEEcccHHHHHHHHHHHHhccceeeEeeccccC
Confidence            45799999999999999999999999999999998663

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=98.27  E-value=7.9e-07  Score=74.18  Aligned_cols=106  Identities=17%  Similarity=0.243  Sum_probs=68.0

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeEEE
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARMIH   86 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~   86 (379)
                      .+|+|||||++|+.+|..|++.|.+|.|++..+.....  ++...    +.             ..+.... ....    
T Consensus         4 a~VvIIGgG~~G~e~A~~l~~~g~~v~i~~~~~~~~~~--~~~~~----l~-------------~~~~~~~-~~~~----   59 (183)
T d1d7ya1           4 APVVVLGAGLASVSFVAELRQAGYQGLITVVGDEAERP--YDRPP----LS-------------KDFMAHG-DAEK----   59 (183)
T ss_dssp             SSEEEECCSHHHHHHHHHHHHHTCCSCEEEEESSCSCC--BCSGG----GG-------------TTHHHHC-CGGG----
T ss_pred             CCEEEECccHHHHHHHHHHHhcCCceEEEEEecccccc--hhhHH----Hh-------------hhhhhhh-hhhh----
Confidence            47999999999999999999999988887765543211  11100    00             0000000 0000    


Q ss_pred             ecCCcEEEeeCCCCCcHHHHhcCCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEEEecCCCCh
Q psy9141          87 GQNGKLREIPYDPVHNQVELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAYS  157 (379)
Q Consensus        87 ~~~g~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlVV~AdG~~S  157 (379)
                            ..    .     ......+++++.+++++++..+...+  .+. +|++   +.+|+||.|.|...
T Consensus        60 ------~~----~-----~~~~~~~i~~~~~~~v~~i~~~~~~~--~~~-~g~~---~~~D~vi~a~G~~p  109 (183)
T d1d7ya1          60 ------IR----L-----DCKRAPEVEWLLGVTAQSFDPQAHTV--ALS-DGRT---LPYGTLVLATGAAP  109 (183)
T ss_dssp             ------SB----C-----CGGGSTTCEEEETCCEEEEETTTTEE--EET-TSCE---EECSEEEECCCEEE
T ss_pred             ------HH----H-----HHhhcCCeEEEEecccccccccccee--Eec-CCcE---eeeeeEEEEEEEEc
Confidence                  00    0     01223589999999999988766554  566 8988   99999999999653

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.27  E-value=2.7e-07  Score=81.72  Aligned_cols=33  Identities=27%  Similarity=0.411  Sum_probs=31.7

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEccCC
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEARE   39 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~   39 (379)
                      ||++||||||+|+.+|..+++.|.+|+|+|+..
T Consensus         2 yDviVIG~G~aG~~aA~~aa~~G~~V~liE~~~   34 (259)
T d1onfa1           2 YDLIVIGGGSGGMAAARRAARHNAKVALVEKSR   34 (259)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             ceEEEECCCHHHHHHHHHHHHCCCeEEEEecCC
Confidence            899999999999999999999999999999864

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.24  E-value=3.5e-07  Score=79.29  Aligned_cols=35  Identities=26%  Similarity=0.402  Sum_probs=31.6

Q ss_pred             CcEEEECCChHHHHHHHHHHhC--CCcEEEEccCCCC
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKN--QYEVNLYEAREDI   41 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~--G~~V~viE~~~~~   41 (379)
                      .+|+|||||||||+||..|+++  |++|+|||+.+.+
T Consensus         2 ~kv~iIGaGpaGl~aA~~L~~~~~~~~V~v~e~~~~~   38 (230)
T d1cjca2           2 PQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVP   38 (230)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSS
T ss_pred             CeEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCC
Confidence            4899999999999999999875  7799999999765

>d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=98.22  E-value=4.6e-07  Score=78.48  Aligned_cols=35  Identities=20%  Similarity=0.166  Sum_probs=31.4

Q ss_pred             CCCcEEEECCChHHHHHHHHHHhCCC-cEEEEccCC
Q psy9141           5 SKKSVVIVGGGLVGSLSACMFAKNQY-EVNLYEARE   39 (379)
Q Consensus         5 ~~~dVvIVGaGpaGl~~A~~La~~G~-~V~viE~~~   39 (379)
                      +.|||+||||||+|+++|..+++.|. +|+|+|+..
T Consensus         2 ~~YDviIIG~GpaGl~aA~~aa~~g~k~V~iie~~~   37 (238)
T d1aoga1           2 KIFDLVVIGAGSGGLEAAWNAATLYKKRVAVIDVQM   37 (238)
T ss_dssp             CSBSEEEECCSHHHHHHHHHHHHTSCCCEEEEESCS
T ss_pred             CccCEEEECCCHHHHHHHHHHHHcCCCEEEEEEeec
Confidence            46999999999999999999999986 688988764

>d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=98.21  E-value=2.7e-07  Score=80.59  Aligned_cols=37  Identities=16%  Similarity=0.190  Sum_probs=33.3

Q ss_pred             CCCcEEEECCChHHHHHHHHHHhCCC-cEEEEccCCCC
Q psy9141           5 SKKSVVIVGGGLVGSLSACMFAKNQY-EVNLYEAREDI   41 (379)
Q Consensus         5 ~~~dVvIVGaGpaGl~~A~~La~~G~-~V~viE~~~~~   41 (379)
                      ++|||+||||||||+++|+.+++.|. +|+|+|+....
T Consensus         2 k~YDvvVIG~GpAG~~aAi~aa~~g~k~V~vie~~~~~   39 (240)
T d1feca1           2 RAYDLVVIGAGSGGLEAGWNAASLHKKRVAVIDLQKHH   39 (240)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHHHCCCEEEEESCSSS
T ss_pred             CccCEEEECCCHHHHHHHHHHHHcCCCEEEEEEEeccC
Confidence            68999999999999999999999986 59999987643

>d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.20  E-value=4.2e-07  Score=79.18  Aligned_cols=32  Identities=28%  Similarity=0.463  Sum_probs=28.5

Q ss_pred             cEEEECCChHHHHHHHHHHhCC---CcEEEEccCC
Q psy9141           8 SVVIVGGGLVGSLSACMFAKNQ---YEVNLYEARE   39 (379)
Q Consensus         8 dVvIVGaGpaGl~~A~~La~~G---~~V~viE~~~   39 (379)
                      +|+||||||+|+++|+.+++.|   .+|+|+|+..
T Consensus         3 ~viVIG~GpaG~~aA~~aa~~~~~~~~V~liEk~~   37 (233)
T d1xdia1           3 RIVILGGGPAGYEAALVAATSHPETTQVTVIDCDG   37 (233)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCTTTEEEEEEESSC
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCCCEEEEEecCC
Confidence            8999999999999999988765   5799999864

>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.18  E-value=4.3e-07  Score=82.65  Aligned_cols=37  Identities=32%  Similarity=0.409  Sum_probs=33.8

Q ss_pred             CCcEEEECCChHHHHHHHHHHhC--CCcEEEEccCCCCC
Q psy9141           6 KKSVVIVGGGLVGSLSACMFAKN--QYEVNLYEAREDIR   42 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La~~--G~~V~viE~~~~~~   42 (379)
                      ++||+||||||+||++|+.|+++  |++|+|+|+.+.+.
T Consensus        50 ~~~~~~~g~g~~g~~~a~~~~~~~~~~~~~~~~~~~~~~   88 (311)
T d2gjca1          50 VSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPG   88 (311)
T ss_dssp             EESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCC
T ss_pred             CCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEEcCCCCc
Confidence            57999999999999999999964  99999999998765

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=98.17  E-value=3.6e-06  Score=68.75  Aligned_cols=103  Identities=22%  Similarity=0.172  Sum_probs=63.9

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeEEEe
Q psy9141           8 SVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARMIHG   87 (379)
Q Consensus         8 dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~   87 (379)
                      +|+|||||++|+-+|..|++ +.+|+|+|+.+.+...    .        +...+.+          ....+....    
T Consensus         2 rVvIIGgG~~G~e~A~~l~~-~~~Vtvv~~~~~~~~~----~--------~~~~~~~----------~~~~~~~~~----   54 (167)
T d1xhca1           2 KVVIVGNGPGGFELAKQLSQ-TYEVTVIDKEPVPYYS----K--------PMLSHYI----------AGFIPRNRL----   54 (167)
T ss_dssp             EEEEECCSHHHHHHHHHHTT-TSEEEEECSSSSCCCC----S--------TTHHHHH----------TTSSCGGGG----
T ss_pred             eEEEECCcHHHHHHHHHHHc-CCCEEEEecccccccc----c--------cchhhhh----------hhhhhhhhh----
Confidence            69999999999999999975 7799999987654321    1        1011111          110000000    


Q ss_pred             cCCcEEEeeCCCCCcHHHHhcCCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEEEecCCCC
Q psy9141          88 QNGKLREIPYDPVHNQVELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAY  156 (379)
Q Consensus        88 ~~g~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlVV~AdG~~  156 (379)
                               +...   .......+++++.++.++.++.... +  .+. +|++   +.+|++|.|.|..
T Consensus        55 ---------~~~~---~~~~~~~~v~~~~~~~v~~i~~~~~-~--~~~-~~~~---i~~D~li~a~G~~  104 (167)
T d1xhca1          55 ---------FPYS---LDWYRKRGIEIRLAEEAKLIDRGRK-V--VIT-EKGE---VPYDTLVLATGAP  104 (167)
T ss_dssp             ---------CSSC---HHHHHHHTEEEECSCCEEEEETTTT-E--EEE-SSCE---EECSEEEECCCEE
T ss_pred             ---------hHHH---HHHHHhccceeeeeccccccccccc-c--ccc-cccc---cccceeEEEEEec
Confidence                     0000   1122235889999999998865432 2  233 6666   9999999999964

>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Brevibacterium sterolicum [TaxId: 1702]

Probab=98.15  E-value=6e-07  Score=83.40  Aligned_cols=38  Identities=13%  Similarity=0.314  Sum_probs=34.2

Q ss_pred             CCCCCCCcEEEECCChHHHHHHHHHHhCCCcEEEEccC
Q psy9141           1 MKCNSKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAR   38 (379)
Q Consensus         1 M~~m~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~   38 (379)
                      |.+-.++||||||+|++|+.+|..|+++|++|+|+|+.
T Consensus         2 ~~~~~~~dvIVVGsG~aG~v~A~rLaeaG~~VlvLEaG   39 (370)
T d3coxa1           2 LADGDRVPALVIGSGYGGAVAALRLTQAGIPTQIVEMG   39 (370)
T ss_dssp             CCTTCEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             CCCCCCCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCC
Confidence            34445699999999999999999999999999999986

>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=98.13  E-value=1e-06  Score=77.99  Aligned_cols=39  Identities=10%  Similarity=0.202  Sum_probs=35.7

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCC
Q psy9141           4 NSKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIR   42 (379)
Q Consensus         4 m~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~   42 (379)
                      .++||++||||||+|+.+|..+++.|.+|+|+|+.+...
T Consensus        40 ~k~yDvvVIGgG~aG~~aA~~~a~~G~kv~vve~~~~lG   78 (261)
T d1mo9a1          40 PREYDAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWPFLG   78 (261)
T ss_dssp             CSCBSEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSS
T ss_pred             CccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCccc
Confidence            468999999999999999999999999999999987553

>d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain
species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]

Probab=98.03  E-value=1.4e-06  Score=80.79  Aligned_cols=34  Identities=26%  Similarity=0.288  Sum_probs=32.6

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCcEEEEccCC
Q psy9141           6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEARE   39 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~   39 (379)
                      +||+||||+|++|+.+|..|++.|.+|+|||+..
T Consensus         2 ~YD~IIVGsG~aG~v~A~rLae~g~~VlvLEaG~   35 (360)
T d1kdga1           2 PYDYIIVGAGPGGIIAADRLSEAGKKVLLLERGG   35 (360)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred             cCCEEEECcCHHHHHHHHHHhhCCCeEEEEEccC
Confidence            6999999999999999999999999999999984

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

Probab=97.99  E-value=2.1e-06  Score=79.47  Aligned_cols=33  Identities=18%  Similarity=0.288  Sum_probs=31.3

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEccCC
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEARE   39 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~   39 (379)
                      .||||||+|++|+.+|..|+++|++|+|||+..
T Consensus         3 v~VIVVGsG~aG~v~A~rLaeaG~~VlvLEaG~   35 (367)
T d1n4wa1           3 VPAVVIGTGYGAAVSALRLGEAGVQTLMLEMGQ   35 (367)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             CeEEEeCcCHHHHHHHHHHHHCcCeEEEEecCC
Confidence            589999999999999999999999999999964

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.84  E-value=9.8e-07  Score=76.39  Aligned_cols=31  Identities=23%  Similarity=0.259  Sum_probs=27.5

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEccC
Q psy9141           8 SVVIVGGGLVGSLSACMFAKNQYEVNLYEAR   38 (379)
Q Consensus         8 dVvIVGaGpaGl~~A~~La~~G~~V~viE~~   38 (379)
                      +|+|||||++||++|+.|+++|++|+++|+.
T Consensus         2 kV~VIGaGi~GlstA~~L~~~G~~v~v~e~~   32 (246)
T d1kifa1           2 RVVVIGAGVIGLSTALCIHERYHSVLQPLDV   32 (246)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHTTTSSSCEE
T ss_pred             EEEEECchHHHHHHHHHHHHCCCCceEEeee
Confidence            5999999999999999999999887666653

>d1ju2a1 c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxId: 3755]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Hydroxynitrile lyase
species: Almond (Prunus dulcis) [TaxId: 3755]

Probab=97.70  E-value=7e-06  Score=75.75  Aligned_cols=34  Identities=32%  Similarity=0.440  Sum_probs=31.4

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCC
Q psy9141           6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEARED   40 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~   40 (379)
                      .||+||||+|++|+.+|..|++. ++|+|||+.+.
T Consensus        26 ~YD~IIVGsG~aG~vlA~rLae~-~kVLvLEaG~~   59 (351)
T d1ju2a1          26 SYDYVIVGGGTSGCPLAATLSEK-YKVLVLERGSL   59 (351)
T ss_dssp             EEEEEEECCSTTHHHHHHHHTTT-SCEEEECSSBC
T ss_pred             CccEEEECccHHHHHHHHHhcCC-CCEEEEecCCC
Confidence            48999999999999999999987 99999999963

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=97.60  E-value=0.00026  Score=56.80  Aligned_cols=34  Identities=21%  Similarity=0.102  Sum_probs=29.7

Q ss_pred             cEEEE--CCChHHHHHHHHHHhCCCcEEEEccCCCC
Q psy9141           8 SVVIV--GGGLVGSLSACMFAKNQYEVNLYEAREDI   41 (379)
Q Consensus         8 dVvIV--GaGpaGl~~A~~La~~G~~V~viE~~~~~   41 (379)
                      .|+|+  |||..|+.+|-.|++.|.+|+|+|+.+.+
T Consensus        41 ~vvi~d~ggg~ig~e~A~~la~~G~~Vtlv~~~~~~   76 (156)
T d1djqa2          41 RVVILNADTYFMAPSLAEKLATAGHEVTIVSGVHLA   76 (156)
T ss_dssp             EEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSCTT
T ss_pred             ceEEEecCCChHHHHHHHHHHHcCCeEEEEecCCcc
Confidence            45555  99999999999999999999999987643

>d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.49  E-value=3.2e-05  Score=62.71  Aligned_cols=44  Identities=5%  Similarity=-0.023  Sum_probs=34.4

Q ss_pred             HhcCCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEEEecCC
Q psy9141         106 LEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADG  154 (379)
Q Consensus       106 ~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlVV~AdG  154 (379)
                      ..+..+++++.++++..++  ++++.+..  +|++.+ +.||.||.|.|
T Consensus       117 ~~~~~gv~~~~~~~v~~i~--~~gv~~~~--~g~e~~-i~aD~Vv~A~G  160 (162)
T d1ps9a2         117 TLLSRGVKMIPGVSYQKID--DDGLHVVI--NGETQV-LAVDNVVICAG  160 (162)
T ss_dssp             HHHHTTCEEECSCEEEEEE--TTEEEEEE--TTEEEE-ECCSEEEECCC
T ss_pred             HHhhCCeEEEeeeEEEEEc--CCCCEEec--CCeEEE-EECCEEEECCC
Confidence            3444689999999999875  55666654  677667 99999999998

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=97.48  E-value=3.5e-05  Score=62.90  Aligned_cols=34  Identities=38%  Similarity=0.552  Sum_probs=30.3

Q ss_pred             CcEEEECCChHHHHHHHHHHhCC--CcEEEEccCCC
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKNQ--YEVNLYEARED   40 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~G--~~V~viE~~~~   40 (379)
                      .+|+|||||++|+.+|..|++.+  .+|+|||+++.
T Consensus         3 krivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~~   38 (186)
T d1fcda1           3 RKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNTD   38 (186)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSC
T ss_pred             CcEEEECccHHHHHHHHHHHHcCCCCcEEEEECCCc
Confidence            37999999999999999999987  48999998864

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=97.43  E-value=5.8e-05  Score=62.03  Aligned_cols=111  Identities=15%  Similarity=0.125  Sum_probs=66.8

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeEE
Q psy9141           6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARMI   85 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~~   85 (379)
                      .-+|+|||||++|+-+|..|++.|.+|+|++..+.+.....  -.       +-          ...+. ... .     
T Consensus         3 ~~~VvIIGgG~~G~e~A~~l~~~g~~v~v~~~~~~~~~~~~--~~-------~~----------~~~~~-~~~-~-----   56 (185)
T d1q1ra1           3 NDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATVIPHH--LP-------PL----------SKAYL-AGK-A-----   56 (185)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCCSCCBC--SG-------GG----------GTTTT-TTC-S-----
T ss_pred             CCCEEEECCcHHHHHHHHHHHHcCCceEEEEecCccccchh--hh-------HH----------HHHHH-Hhh-h-----
Confidence            35899999999999999999999999999988775532100  00       00          00000 000 0     


Q ss_pred             EecCCcEEEeeCCCCCcHHHHhcCCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEEEecCCCCh
Q psy9141          86 HGQNGKLREIPYDPVHNQVELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAYS  157 (379)
Q Consensus        86 ~~~~g~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlVV~AdG~~S  157 (379)
                         ...    ..... . .......+..+..+..++.++.+...  +... ++.+   +.+|.+|.+.|+.+
T Consensus        57 ---~~~----~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~--v~~~-~~~~---i~~d~~i~~~G~~~  113 (185)
T d1q1ra1          57 ---TAE----SLYLR-T-PDAYAAQNIQLLGGTQVTAINRDRQQ--VILS-DGRA---LDYDRLVLATGGRP  113 (185)
T ss_dssp             ---CSG----GGBSS-C-HHHHHHTTEEEECSCCEEEEETTTTE--EEET-TSCE---EECSEEEECCCEEE
T ss_pred             ---hhh----hhhhh-h-hhhhcccceeeeccceeeeecccccE--EEee-ceeE---EEeeeeeeeeeccc
Confidence               000    00000 0 12222346667777777777665544  3445 7776   99999999999754

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=97.22  E-value=0.00026  Score=51.73  Aligned_cols=38  Identities=26%  Similarity=0.326  Sum_probs=33.8

Q ss_pred             CCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCC
Q psy9141           5 SKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIR   42 (379)
Q Consensus         5 ~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~   42 (379)
                      +...|+|+|.|.+|+++|..|+++|.+|+++|.+..+.
T Consensus         4 ~~K~v~ViGlG~sG~s~a~~L~~~g~~v~~~D~~~~~~   41 (93)
T d2jfga1           4 QGKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTPP   41 (93)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHTTCCCEEEESSSSCT
T ss_pred             CCCEEEEEeECHHHHHHHHHHHHCCCEEEEeeCCcCch
Confidence            34579999999999999999999999999999877543

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=97.18  E-value=0.00015  Score=59.64  Aligned_cols=33  Identities=21%  Similarity=0.221  Sum_probs=30.8

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEccCC
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEARE   39 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~   39 (379)
                      ..|+|||+|..|+++|..|+++|++|.++++++
T Consensus         2 k~iaIiGaG~~G~~~A~~l~~~G~~V~~~~r~~   34 (184)
T d1bg6a2           2 KTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDA   34 (184)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCEEEEEECCH
Confidence            369999999999999999999999999999864

>d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=97.06  E-value=0.0083  Score=45.95  Aligned_cols=93  Identities=17%  Similarity=0.174  Sum_probs=68.0

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeEE
Q psy9141           6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARMI   85 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~~   85 (379)
                      ..+|+|||+|-+.+-.|+.|++..-+|+++-|.+.....             +...                        
T Consensus        30 gk~V~VvGgG~sA~~~A~~L~~~a~~V~li~r~~~~~~~-------------~~~~------------------------   72 (126)
T d1fl2a2          30 GKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMKAD-------------QVLQ------------------------   72 (126)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTTBSEEEEECSSSSCCSC-------------HHHH------------------------
T ss_pred             CceEEEEeCCHHHHHHHHhhhccCCceEEEecccccccc-------------cccc------------------------
Confidence            458999999999999999999999999999988654321             1000                        


Q ss_pred             EecCCcEEEeeCCCCCcHHHHhcCCCCeEEeCceEEEEEecCCeEE-EEEc--cCCceeEEEeecEEEecCC
Q psy9141          86 HGQNGKLREIPYDPVHNQVELEQYPDCNIYFQHKLINLDVNSGNVT-FYRT--EDNSETKITDNQLIIGADG  154 (379)
Q Consensus        86 ~~~~g~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~v~-v~~~--~~G~~~~~i~adlVV~AdG  154 (379)
                                        +++.+.++++++++++++++.-+++.++ +++.  .+|++.+ +.+|-|..+=|
T Consensus        73 ------------------~~~~~~~~I~v~~~~~v~~i~G~~~~v~~v~l~~~~tge~~~-l~vdgvFv~IG  125 (126)
T d1fl2a2          73 ------------------DKLRSLKNVDIILNAQTTEVKGDGSKVVGLEYRDRVSGDIHN-IELAGIFVQIG  125 (126)
T ss_dssp             ------------------HHHHTCTTEEEESSEEEEEEEESSSSEEEEEEEETTTCCEEE-EECSEEEECSC
T ss_pred             ------------------cccccccceeEEcCcceEEEEccccceeeEEEEECCCCCEEE-EECCEEEEEeC
Confidence                              1233346899999999999988765443 4432  2577767 88888887755

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=97.05  E-value=0.00022  Score=58.05  Aligned_cols=34  Identities=21%  Similarity=0.316  Sum_probs=31.9

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEccCCC
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEARED   40 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~   40 (379)
                      ..|+|||||-+|..+|..|++.|++|+|+||...
T Consensus         3 K~IliiGaG~~G~~~a~~L~~~g~~V~v~dr~~~   36 (182)
T d1e5qa1           3 KSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLE   36 (182)
T ss_dssp             CEEEEECCSTTHHHHHHHHHTTTCEEEEEESCHH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEECChH
Confidence            5799999999999999999999999999998863

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.01  E-value=0.0041  Score=49.48  Aligned_cols=35  Identities=17%  Similarity=0.090  Sum_probs=30.6

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCC-cEEEEccCCCC
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKNQY-EVNLYEAREDI   41 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~G~-~V~viE~~~~~   41 (379)
                      -+|+|||||-+|+=+|..+.+.|. +|+++.|++..
T Consensus        46 ~kVvVIGGGdtA~D~A~~a~r~GA~~V~vi~rr~~~   81 (153)
T d1gtea3          46 GAVIVLGAGDTAFDCATSALRCGARRVFLVFRKGFV   81 (153)
T ss_dssp             SEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSCGG
T ss_pred             CEEEEECCChhHHHHHHHHHHcCCcceeEEEeCChh
Confidence            379999999999999999999986 58899987644

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=96.88  E-value=0.00046  Score=55.56  Aligned_cols=33  Identities=21%  Similarity=0.311  Sum_probs=31.2

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEccCCC
Q psy9141           8 SVVIVGGGLVGSLSACMFAKNQYEVNLYEARED   40 (379)
Q Consensus         8 dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~   40 (379)
                      +|+|||+|-.|..+|..|++.|++|++++|.+.
T Consensus         2 kI~IiGaG~iG~~~a~~L~~~G~~V~~~~r~~~   34 (167)
T d1ks9a2           2 KITVLGCGALGQLWLTALCKQGHEVQGWLRVPQ   34 (167)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             EEEEECcCHHHHHHHHHHHHCCCceEEEEcCHH
Confidence            599999999999999999999999999998864

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.84  E-value=0.00041  Score=54.02  Aligned_cols=33  Identities=24%  Similarity=0.346  Sum_probs=31.2

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEccCCC
Q psy9141           8 SVVIVGGGLVGSLSACMFAKNQYEVNLYEARED   40 (379)
Q Consensus         8 dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~   40 (379)
                      .|+|+|+|..|..+|..|.+.|++|+++|+++.
T Consensus         2 ~IvI~G~G~~G~~la~~L~~~g~~v~vid~d~~   34 (132)
T d1lssa_           2 YIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDKD   34 (132)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCCcceecCChh
Confidence            599999999999999999999999999999874

>d1vdca2 c.3.1.5 (A:118-243) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.77  E-value=0.017  Score=44.32  Aligned_cols=92  Identities=13%  Similarity=0.154  Sum_probs=65.5

Q ss_pred             CCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeE
Q psy9141           5 SKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARM   84 (379)
Q Consensus         5 ~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~   84 (379)
                      +..+|+|||+|-+.+-.|+.|++.--+|+++-|.+..+..             +..         .              
T Consensus        33 rgk~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~~~ra~-------------~~~---------~--------------   76 (130)
T d1vdca2          33 RNKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDAFRAS-------------KIM---------Q--------------   76 (130)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHTTTSSEEEEECSSSSCCSC-------------HHH---------H--------------
T ss_pred             CCCEEEEEcCchHHHHHHHHHhCCCCcEEEEEeccccccc-------------hhh---------h--------------
Confidence            3569999999999999999999999999999888765421             000         0              


Q ss_pred             EEecCCcEEEeeCCCCCcHHHHhcCCCCeEEeCceEEEEEecCC--e---EEEEEccCCceeEEEeecEEEec
Q psy9141          85 IHGQNGKLREIPYDPVHNQVELEQYPDCNIYFQHKLINLDVNSG--N---VTFYRTEDNSETKITDNQLIIGA  152 (379)
Q Consensus        85 ~~~~~g~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~--~---v~v~~~~~G~~~~~i~adlVV~A  152 (379)
                                         +++...++++++++++++++.-++.  .   +.++...+|+..+ +.+|-|..|
T Consensus        77 -------------------~~l~~~~nI~v~~~~~v~~i~Gd~~~~~v~~v~l~~~~tge~~~-l~~dGvFVa  129 (130)
T d1vdca2          77 -------------------QRALSNPKIDVIWNSSVVEAYGDGERDVLGGLKVKNVVTGDVSD-LKVSGLFFA  129 (130)
T ss_dssp             -------------------HHHHTCTTEEEECSEEEEEEEESSSSSSEEEEEEEETTTCCEEE-EECSEEEEC
T ss_pred             -------------------hccccCCceEEEeccEEEEEEccCCcccEEEEEEEECCCCCEEE-EECCEEEEE
Confidence                               2233346899999999999987653  2   3344333676666 777776554

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.58  E-value=0.001  Score=55.37  Aligned_cols=35  Identities=37%  Similarity=0.487  Sum_probs=32.2

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCC
Q psy9141           6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEARED   40 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~   40 (379)
                      -..|.|||||..|...|..++++|++|+++|+++.
T Consensus         4 IkkvaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~   38 (192)
T d1f0ya2           4 VKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTED   38 (192)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             eEEEEEECcCHHHHHHHHHHHhCCCcEEEEECChH
Confidence            34899999999999999999999999999998863

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.47  E-value=0.0012  Score=52.47  Aligned_cols=39  Identities=33%  Similarity=0.518  Sum_probs=34.6

Q ss_pred             CCCCCCCcEEEECCChHHHHHHHHHHhCCC--cEEEEccCC
Q psy9141           1 MKCNSKKSVVIVGGGLVGSLSACMFAKNQY--EVNLYEARE   39 (379)
Q Consensus         1 M~~m~~~dVvIVGaGpaGl~~A~~La~~G~--~V~viE~~~   39 (379)
                      |++....+|.|||||-+|.++|+.|+..|+  +++++|..+
T Consensus         1 m~~~~~~KI~IiGaG~vG~~~a~~l~~~~l~~el~L~Di~~   41 (148)
T d1ldna1           1 MKNNGGARVVVIGAGFVGASYVFALMNQGIADEIVLIDANE   41 (148)
T ss_dssp             CTTTTSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             CCCCCCCeEEEECcCHHHHHHHHHHHhcCCCceEEEEeecc
Confidence            777677899999999999999999999886  799999764

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.45  E-value=0.001  Score=55.78  Aligned_cols=32  Identities=25%  Similarity=0.299  Sum_probs=30.2

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEccCC
Q psy9141           8 SVVIVGGGLVGSLSACMFAKNQYEVNLYEARE   39 (379)
Q Consensus         8 dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~   39 (379)
                      .|.|||.|-+|+.+|..||+.|++|+.+|.++
T Consensus         2 kI~ViGlG~vGl~~a~~la~~g~~V~g~D~n~   33 (202)
T d1mv8a2           2 RISIFGLGYVGAVCAGCLSARGHEVIGVDVSS   33 (202)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEEECCCHhHHHHHHHHHhCCCcEEEEeCCH
Confidence            49999999999999999999999999999775

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=96.43  E-value=0.00068  Score=56.31  Aligned_cols=32  Identities=28%  Similarity=0.468  Sum_probs=30.1

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEccCC
Q psy9141           8 SVVIVGGGLVGSLSACMFAKNQYEVNLYEARE   39 (379)
Q Consensus         8 dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~   39 (379)
                      +|+|||||--|.++|..|++.|++|+++.+++
T Consensus         9 KI~ViGaG~wGtAlA~~La~~g~~V~l~~r~~   40 (189)
T d1n1ea2           9 KAVVFGSGAFGTALAMVLSKKCREVCVWHMNE   40 (189)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTEEEEEEECSCH
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCeEEEEEecH
Confidence            69999999999999999999999999998764

>d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=96.37  E-value=0.04  Score=41.83  Aligned_cols=96  Identities=18%  Similarity=0.155  Sum_probs=64.9

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeEE
Q psy9141           6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARMI   85 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~~   85 (379)
                      ..+|+|||+|-+.+-.|..|++..-+|+++-|++.....             +...+.++                    
T Consensus        27 ~k~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~~~~~~-------------~~~~~~~~--------------------   73 (126)
T d1trba2          27 NQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFRAE-------------KILIKRLM--------------------   73 (126)
T ss_dssp             TSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSCCCC-------------HHHHHHHH--------------------
T ss_pred             CCEEEEECCCHHHHHHHHHHhhcCCcEEEEeecccccch-------------hHHHHHHH--------------------
Confidence            458999999999999999999999999999988755321             11111111                    


Q ss_pred             EecCCcEEEeeCCCCCcHHHHhcCCCCeEEeCceEEEEEecCCeEE-EEEc--cCCc-eeEEEeecEEEecCC
Q psy9141          86 HGQNGKLREIPYDPVHNQVELEQYPDCNIYFQHKLINLDVNSGNVT-FYRT--EDNS-ETKITDNQLIIGADG  154 (379)
Q Consensus        86 ~~~~g~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~v~-v~~~--~~G~-~~~~i~adlVV~AdG  154 (379)
                                         ......++.+++++.++++.-++.+++ +++.  .+++ ..+ +.+|-|+.+-|
T Consensus        74 -------------------~~~~~~~i~~~~~~~v~~i~G~~~~v~~v~l~~~~~~e~~~~-l~~dgvFv~iG  126 (126)
T d1trba2          74 -------------------DKVENGNIILHTNRTLEEVTGDQMGVTGVRLRDTQNSDNIES-LDVAGLFVAIG  126 (126)
T ss_dssp             -------------------HHHHTSSEEEECSCEEEEEEECSSSEEEEEEECCTTCCCCEE-EECSEEEECSC
T ss_pred             -------------------HhhcccceeEecceEEEEEECCCCceEEEEEEECCCCceEEE-EECCEEEEEeC
Confidence                               112235778888999999888765454 4444  1222 234 77887776654

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=96.36  E-value=0.0012  Score=54.57  Aligned_cols=32  Identities=19%  Similarity=0.302  Sum_probs=30.5

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEccCC
Q psy9141           8 SVVIVGGGLVGSLSACMFAKNQYEVNLYEARE   39 (379)
Q Consensus         8 dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~   39 (379)
                      .|.|||||..|...|..++++|++|+++|+++
T Consensus         6 ~vaViGaG~mG~~iA~~~a~~G~~V~l~D~~~   37 (186)
T d1wdka3           6 QAAVLGAGIMGGGIAYQSASKGTPILMKDINE   37 (186)
T ss_dssp             SEEEECCHHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            69999999999999999999999999999875

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=96.35  E-value=0.0013  Score=50.98  Aligned_cols=33  Identities=18%  Similarity=0.208  Sum_probs=31.1

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEccCCC
Q psy9141           8 SVVIVGGGLVGSLSACMFAKNQYEVNLYEARED   40 (379)
Q Consensus         8 dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~   40 (379)
                      +++|||+|..|..+|..|.+.|++|+++|+++.
T Consensus         2 ~~iIiG~G~~G~~la~~L~~~g~~vvvid~d~~   34 (134)
T d2hmva1           2 QFAVIGLGRFGGSIVKELHRMGHEVLAVDINEE   34 (134)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCCEEEESCHH
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCeEEEecCcHH
Confidence            589999999999999999999999999998864

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=96.05  E-value=0.0039  Score=50.86  Aligned_cols=35  Identities=17%  Similarity=0.192  Sum_probs=32.6

Q ss_pred             CCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCC
Q psy9141           5 SKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEARE   39 (379)
Q Consensus         5 ~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~   39 (379)
                      +..+|+|||||.+|+.+|....+.|..|+++|.+.
T Consensus        28 ~pa~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~   62 (183)
T d1l7da1          28 PPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRA   62 (183)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCS
T ss_pred             CCcEEEEEcCcHHHHHHHHHHHHcCCEEEEEeccH
Confidence            45799999999999999999999999999999875

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=96.02  E-value=0.0037  Score=49.82  Aligned_cols=36  Identities=25%  Similarity=0.569  Sum_probs=31.8

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHhCCC-cEEEEccCC
Q psy9141           4 NSKKSVVIVGGGLVGSLSACMFAKNQY-EVNLYEARE   39 (379)
Q Consensus         4 m~~~dVvIVGaGpaGl~~A~~La~~G~-~V~viE~~~   39 (379)
                      .++..|.|||+|-+|.++|+.|+..++ +++++|.++
T Consensus         5 ~k~~KI~IIGaG~VG~~lA~~l~~~~~~el~L~D~~~   41 (154)
T d1pzga1           5 QRRKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVK   41 (154)
T ss_dssp             SCCCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSS
T ss_pred             cCCCcEEEECCCHHHHHHHHHHHhCCCceEEEEEecc
Confidence            356899999999999999999999886 799999765

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=95.95  E-value=0.0041  Score=49.99  Aligned_cols=35  Identities=31%  Similarity=0.486  Sum_probs=32.3

Q ss_pred             CCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCC
Q psy9141           5 SKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEARE   39 (379)
Q Consensus         5 ~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~   39 (379)
                      +...|+|||+|.+|+.++..+.+.|-+|+++|.+.
T Consensus        31 ~pa~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~~   65 (168)
T d1pjca1          31 KPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINV   65 (168)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCcEEEEECCChHHHHHHHHHhhCCCEEEEEeCcH
Confidence            46799999999999999999999999999999764

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=95.95  E-value=0.0027  Score=50.99  Aligned_cols=32  Identities=19%  Similarity=0.189  Sum_probs=29.9

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEccCC
Q psy9141           8 SVVIVGGGLVGSLSACMFAKNQYEVNLYEARE   39 (379)
Q Consensus         8 dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~   39 (379)
                      .|.|||.|..|.++|..|+++|++|+++|+++
T Consensus         2 kI~iIG~G~mG~~lA~~l~~~g~~V~~~d~~~   33 (165)
T d2f1ka2           2 KIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQ   33 (165)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEEEeecHHHHHHHHHHHHCCCEEEEEECCc
Confidence            49999999999999999999999999998764

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=95.71  E-value=0.0046  Score=48.80  Aligned_cols=34  Identities=32%  Similarity=0.453  Sum_probs=30.5

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCC--cEEEEccCC
Q psy9141           6 KKSVVIVGGGLVGSLSACMFAKNQY--EVNLYEARE   39 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La~~G~--~V~viE~~~   39 (379)
                      +..|.|||+|-+|.++|+.|++.|+  +++++|++.
T Consensus         5 ~~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~~   40 (146)
T d1ez4a1           5 HQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVK   40 (146)
T ss_dssp             BCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCcEEEEeeccc
Confidence            4589999999999999999999985  799999764

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=95.59  E-value=0.0069  Score=47.75  Aligned_cols=33  Identities=27%  Similarity=0.525  Sum_probs=30.8

Q ss_pred             CcEEEEC-CChHHHHHHHHHHhCCCcEEEEccCC
Q psy9141           7 KSVVIVG-GGLVGSLSACMFAKNQYEVNLYEARE   39 (379)
Q Consensus         7 ~dVvIVG-aGpaGl~~A~~La~~G~~V~viE~~~   39 (379)
                      ..|.||| .|..|.++|..|.++|++|.++|+..
T Consensus        10 ~kI~iIGg~G~mG~~la~~L~~~G~~V~~~d~~~   43 (152)
T d2pv7a2          10 HKIVIVGGYGKLGGLFARYLRASGYPISILDRED   43 (152)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTC
T ss_pred             CeEEEEcCCCHHHHHHHHHHHHcCCCcEeccccc
Confidence            3899999 69999999999999999999999875

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=95.57  E-value=0.0079  Score=45.00  Aligned_cols=35  Identities=20%  Similarity=0.294  Sum_probs=31.4

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHhCCCcEEEEccC
Q psy9141           4 NSKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAR   38 (379)
Q Consensus         4 m~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~   38 (379)
                      .+...|+|||+|.+|..-|..|.+.|.+|+++...
T Consensus        10 l~~k~vlVvG~G~va~~ka~~ll~~ga~v~v~~~~   44 (113)
T d1pjqa1          10 LRDRDCLIVGGGDVAERKARLLLEAGARLTVNALT   44 (113)
T ss_dssp             CBTCEEEEECCSHHHHHHHHHHHHTTBEEEEEESS
T ss_pred             eCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence            34678999999999999999999999999999744

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.51  E-value=0.0049  Score=48.68  Aligned_cols=35  Identities=20%  Similarity=0.363  Sum_probs=31.2

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHhCCCcEEEEccC
Q psy9141           4 NSKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAR   38 (379)
Q Consensus         4 m~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~   38 (379)
                      ++...|+|||||.+|+.-|..|.+.|.+|+|+...
T Consensus        11 l~gkrvLViGgG~va~~ka~~Ll~~GA~VtVvap~   45 (150)
T d1kyqa1          11 LKDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPD   45 (150)
T ss_dssp             CTTCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEE
T ss_pred             eCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            34578999999999999999999999999999543

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=95.42  E-value=0.0047  Score=50.49  Aligned_cols=31  Identities=29%  Similarity=0.464  Sum_probs=28.9

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEccC
Q psy9141           8 SVVIVGGGLVGSLSACMFAKNQYEVNLYEAR   38 (379)
Q Consensus         8 dVvIVGaGpaGl~~A~~La~~G~~V~viE~~   38 (379)
                      +|.|||+|.-|.++|..|++.|++|.++.|.
T Consensus         2 kI~ViGaG~~GtalA~~la~~g~~V~l~~r~   32 (180)
T d1txga2           2 IVSILGAGAMGSALSVPLVDNGNEVRIWGTE   32 (180)
T ss_dssp             EEEEESCCHHHHHHHHHHHHHCCEEEEECCG
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEEec
Confidence            5999999999999999999999999999664

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.31  E-value=0.012  Score=47.01  Aligned_cols=36  Identities=28%  Similarity=0.301  Sum_probs=32.0

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHhCCC--cEEEEccCC
Q psy9141           4 NSKKSVVIVGGGLVGSLSACMFAKNQY--EVNLYEARE   39 (379)
Q Consensus         4 m~~~dVvIVGaGpaGl~~A~~La~~G~--~V~viE~~~   39 (379)
                      |+...|.|||+|-+|.++|+.|...|+  ++.++|.++
T Consensus        17 ~~~~KI~IIGaG~VG~~~A~~l~~~~l~~elvL~D~~~   54 (159)
T d2ldxa1          17 LSRCKITVVGVGDVGMACAISILLKGLADELALVDADT   54 (159)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHTTTSCSEEEEECSCH
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence            556689999999999999999999987  799999764

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=95.12  E-value=0.0071  Score=49.00  Aligned_cols=32  Identities=28%  Similarity=0.280  Sum_probs=29.4

Q ss_pred             cEEEE-CCChHHHHHHHHHHhCCCcEEEEccCC
Q psy9141           8 SVVIV-GGGLVGSLSACMFAKNQYEVNLYEARE   39 (379)
Q Consensus         8 dVvIV-GaGpaGl~~A~~La~~G~~V~viE~~~   39 (379)
                      .|+|| |+|-.|.++|..|++.|++|++..|++
T Consensus         2 ki~vigGaG~iG~alA~~la~~G~~V~l~~R~~   34 (212)
T d1jaya_           2 RVALLGGTGNLGKGLALRLATLGHEIVVGSRRE   34 (212)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTTTCEEEEEESSH
T ss_pred             EEEEEeCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            49999 679999999999999999999999875

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=95.11  E-value=0.0058  Score=50.46  Aligned_cols=31  Identities=23%  Similarity=0.398  Sum_probs=28.1

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEccCC
Q psy9141           8 SVVIVGGGLVGSLSACMFAKNQYEVNLYEARE   39 (379)
Q Consensus         8 dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~   39 (379)
                      .|.|||.|-+||.+|..++ .|++|+.+|-++
T Consensus         2 kI~ViGlG~vGl~~a~~~a-~g~~V~g~Din~   32 (196)
T d1dlja2           2 KIAVAGSGYVGLSLGVLLS-LQNEVTIVDILP   32 (196)
T ss_dssp             EEEEECCSHHHHHHHHHHT-TTSEEEEECSCH
T ss_pred             EEEEECCChhHHHHHHHHH-CCCcEEEEECCH
Confidence            4999999999999999887 599999999775

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=95.10  E-value=0.0085  Score=48.09  Aligned_cols=32  Identities=19%  Similarity=0.203  Sum_probs=29.2

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEccC
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEAR   38 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~   38 (379)
                      -.|+|+|+|+.|+.++..++..|.+|+++|++
T Consensus        28 ~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~   59 (170)
T d1e3ja2          28 TTVLVIGAGPIGLVSVLAAKAYGAFVVCTARS   59 (170)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CEEEEEcccccchhhHhhHhhhcccccccchH
Confidence            46999999999999999999999999999865

>d1vg0a1 c.3.1.3 (A:3-444,A:558-606) Rab escort protein 1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Rab escort protein 1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.87  E-value=0.013  Score=55.12  Aligned_cols=38  Identities=24%  Similarity=0.306  Sum_probs=35.6

Q ss_pred             CCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCC
Q psy9141           5 SKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIR   42 (379)
Q Consensus         5 ~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~   42 (379)
                      .+|||||+|-|+.=+.+|.+|++.|.+|+-+|+++.-+
T Consensus         5 ~e~DVII~GTGL~ESILAaAlSr~GkkVLHiD~N~yYG   42 (491)
T d1vg0a1           5 SDFDVIVIGTGLPESIIAAACSRSGQRVLHVDSRSYYG   42 (491)
T ss_dssp             SBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSC
T ss_pred             CccCEEEECCChHHHHHHHHHHhcCCEEEEecCCCcCC
Confidence            47999999999999999999999999999999998664

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.85  E-value=0.011  Score=47.20  Aligned_cols=33  Identities=18%  Similarity=0.174  Sum_probs=29.3

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEccCC
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEARE   39 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~   39 (379)
                      -.|+|+|+|+.|++++..++..|.+|+++++++
T Consensus        29 ~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~   61 (166)
T d1llua2          29 QWVAISGIGGLGHVAVQYARAMGLHVAAIDIDD   61 (166)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEeeccccHHHHHHHHHHcCCccceecchh
Confidence            469999999999999999999999999997653

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=94.79  E-value=0.018  Score=45.94  Aligned_cols=35  Identities=26%  Similarity=0.376  Sum_probs=31.7

Q ss_pred             CCCcEEEECCChHHHHHHHHHHhCCC--cEEEEccCC
Q psy9141           5 SKKSVVIVGGGLVGSLSACMFAKNQY--EVNLYEARE   39 (379)
Q Consensus         5 ~~~dVvIVGaGpaGl~~A~~La~~G~--~V~viE~~~   39 (379)
                      ++..|.|||+|-+|.++|+.|+..|+  ++.++|.++
T Consensus        19 ~~~KV~IIGaG~VG~~~A~~l~~~~l~~ElvLiD~~~   55 (160)
T d1i0za1          19 PNNKITVVGVGQVGMACAISILGKSLADELALVDVLE   55 (160)
T ss_dssp             CSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCH
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence            45699999999999999999999998  899999864

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.76  E-value=0.012  Score=47.27  Aligned_cols=32  Identities=16%  Similarity=0.278  Sum_probs=28.6

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCC-cEEEEccC
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKNQY-EVNLYEAR   38 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~G~-~V~viE~~   38 (379)
                      -.|+|+|+|+.|++++..+...|. +|+++|++
T Consensus        28 d~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~   60 (171)
T d1pl8a2          28 HKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLS   60 (171)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESC
T ss_pred             CEEEEECCCccHHHHHHHHHHcCCceEEeccCC
Confidence            469999999999999999999998 68888855

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=94.70  E-value=0.016  Score=45.38  Aligned_cols=33  Identities=27%  Similarity=0.395  Sum_probs=29.7

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCC--cEEEEccCC
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKNQY--EVNLYEARE   39 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~G~--~V~viE~~~   39 (379)
                      .+|.|||+|-+|.++|+.|+..|+  +++++|.++
T Consensus         2 ~Ki~IIGaG~VG~~~a~~l~~~~l~~ElvL~D~~~   36 (143)
T d1llda1           2 TKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAK   36 (143)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSH
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence            479999999999999999999987  799999664

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.66  E-value=0.014  Score=46.86  Aligned_cols=33  Identities=27%  Similarity=0.262  Sum_probs=29.5

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEccCC
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEARE   39 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~   39 (379)
                      -.|+|+|+|+.|++++..+...|.+|+++++++
T Consensus        29 ~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~   61 (168)
T d1piwa2          29 KKVGIVGLGGIGSMGTLISKAMGAETYVISRSS   61 (168)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCEEEEEESSS
T ss_pred             CEEEEECCCCcchhHHHHhhhccccccccccch
Confidence            469999999999999988888899999998765

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=94.65  E-value=0.018  Score=44.88  Aligned_cols=32  Identities=31%  Similarity=0.542  Sum_probs=29.3

Q ss_pred             cEEEECCChHHHHHHHHHHhCCC--cEEEEccCC
Q psy9141           8 SVVIVGGGLVGSLSACMFAKNQY--EVNLYEARE   39 (379)
Q Consensus         8 dVvIVGaGpaGl~~A~~La~~G~--~V~viE~~~   39 (379)
                      +|.|||||-+|.++|+.|+..++  +++++|.++
T Consensus         2 KI~IIGaG~VG~~la~~l~~~~l~~el~L~Di~~   35 (142)
T d1guza1           2 KITVIGAGNVGATTAFRLAEKQLARELVLLDVVE   35 (142)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSS
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCceEEEecccc
Confidence            59999999999999999999985  899999775

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=94.56  E-value=0.019  Score=45.88  Aligned_cols=31  Identities=26%  Similarity=0.484  Sum_probs=27.4

Q ss_pred             cEEEECCChHHHHHHHHHHhCCC--cEEEEccC
Q psy9141           8 SVVIVGGGLVGSLSACMFAKNQY--EVNLYEAR   38 (379)
Q Consensus         8 dVvIVGaGpaGl~~A~~La~~G~--~V~viE~~   38 (379)
                      .|.|||.|..|.++|..|.+.|+  +|..+|++
T Consensus         3 ~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~   35 (171)
T d2g5ca2           3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDIN   35 (171)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSC
T ss_pred             EEEEEccCHHHHHHHHHHHhcCCCeEEEEEECC
Confidence            59999999999999999999997  56777765

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=94.48  E-value=0.026  Score=44.41  Aligned_cols=34  Identities=26%  Similarity=0.642  Sum_probs=30.2

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCC-cEEEEccCC
Q psy9141           6 KKSVVIVGGGLVGSLSACMFAKNQY-EVNLYEARE   39 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La~~G~-~V~viE~~~   39 (379)
                      +.+|.|||+|-+|.++|+.|.+.++ +++++|..+
T Consensus         3 ~~KI~IIGaG~VG~~~a~~l~~~~l~el~L~Di~~   37 (150)
T d1t2da1           3 KAKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVK   37 (150)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCCeEEEEeccC
Confidence            4589999999999999999999887 799999765

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=94.46  E-value=0.021  Score=46.05  Aligned_cols=34  Identities=9%  Similarity=0.216  Sum_probs=31.7

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEccCCC
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEARED   40 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~   40 (379)
                      .+|-|||-|..|..+|..|.+.|++|.+++|.+.
T Consensus         3 ~nIg~IGlG~MG~~mA~~L~~~G~~V~v~dr~~~   36 (176)
T d2pgda2           3 ADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVS   36 (176)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTH
T ss_pred             CcEEEEeEhHHHHHHHHHHHHCCCeEEEEcCCHH
Confidence            4799999999999999999999999999998863

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=94.46  E-value=0.017  Score=45.03  Aligned_cols=32  Identities=31%  Similarity=0.575  Sum_probs=29.0

Q ss_pred             cEEEECCChHHHHHHHHHHhCCC-cEEEEccCC
Q psy9141           8 SVVIVGGGLVGSLSACMFAKNQY-EVNLYEARE   39 (379)
Q Consensus         8 dVvIVGaGpaGl~~A~~La~~G~-~V~viE~~~   39 (379)
                      .|.|||+|-+|.++|+.|+..++ ++.++|..+
T Consensus         3 KI~IIGaG~VG~~~A~~l~~~~l~dl~l~D~~~   35 (142)
T d1uxja1           3 KISIIGAGFVGSTTAHWLAAKELGDIVLLDIVE   35 (142)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCSEEEEECSSS
T ss_pred             eEEEECCCHHHHHHHHHHHhCCcceEEEEeecc
Confidence            69999999999999999999887 899998765

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.32  E-value=0.02  Score=45.54  Aligned_cols=32  Identities=22%  Similarity=0.429  Sum_probs=30.5

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEccCC
Q psy9141           8 SVVIVGGGLVGSLSACMFAKNQYEVNLYEARE   39 (379)
Q Consensus         8 dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~   39 (379)
                      .|.|||-|..|...|..|.++|++|.++|+++
T Consensus         3 kIg~IGlG~MG~~iA~~L~~~g~~v~~~d~~~   34 (162)
T d3cuma2           3 QIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQ   34 (162)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSSH
T ss_pred             EEEEEEEHHHHHHHHHHHHHCCCeEEEEECch
Confidence            59999999999999999999999999999875

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=94.31  E-value=0.028  Score=44.14  Aligned_cols=33  Identities=6%  Similarity=0.149  Sum_probs=31.0

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEccCC
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEARE   39 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~   39 (379)
                      -+|+|+|.|..|..++..|.+.|.+|+++|.++
T Consensus         4 nHiII~G~g~~g~~l~~~L~~~~~~v~vId~d~   36 (153)
T d1id1a_           4 DHFIVCGHSILAINTILQLNQRGQNVTVISNLP   36 (153)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCEEEEeccc
Confidence            369999999999999999999999999999876

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=94.19  E-value=0.029  Score=43.65  Aligned_cols=33  Identities=33%  Similarity=0.511  Sum_probs=29.1

Q ss_pred             cEEEECCChHHHHHHHHHHhCCC--cEEEEccCCC
Q psy9141           8 SVVIVGGGLVGSLSACMFAKNQY--EVNLYEARED   40 (379)
Q Consensus         8 dVvIVGaGpaGl~~A~~La~~G~--~V~viE~~~~   40 (379)
                      .|.|||+|-+|.++|+.|+..++  ++.++|.++.
T Consensus         3 KI~IIGaG~VG~~~a~~l~~~~l~~el~L~D~~~~   37 (142)
T d1y6ja1           3 KVAIIGAGFVGASAAFTMALRQTANELVLIDVFKE   37 (142)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC--
T ss_pred             eEEEECCCHHHHHHHHHHHhcCCCCEEEEEeccCC
Confidence            69999999999999999999987  7999997764

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=94.19  E-value=0.017  Score=46.84  Aligned_cols=33  Identities=24%  Similarity=0.306  Sum_probs=28.9

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCC-cEEEEccCC
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKNQY-EVNLYEARE   39 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~G~-~V~viE~~~   39 (379)
                      -.|+|+|+|+.|+.+...+...|. +|+++|+++
T Consensus        30 ~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~   63 (182)
T d1vj0a2          30 KTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSP   63 (182)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCH
T ss_pred             CEEEEECCCccchhheeccccccccccccccccc
Confidence            579999999999999999999997 789988653

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=94.15  E-value=0.02  Score=44.83  Aligned_cols=32  Identities=34%  Similarity=0.591  Sum_probs=28.9

Q ss_pred             cEEEECC-ChHHHHHHHHHHhCCC--cEEEEccCC
Q psy9141           8 SVVIVGG-GLVGSLSACMFAKNQY--EVNLYEARE   39 (379)
Q Consensus         8 dVvIVGa-GpaGl~~A~~La~~G~--~V~viE~~~   39 (379)
                      +|.|||| |.+|.++|+.|+.+++  ++.++|..+
T Consensus         2 KV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~~   36 (145)
T d1hyea1           2 KVTIIGASGRVGSATALLLAKEPFMKDLVLIGREH   36 (145)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGG
T ss_pred             EEEEECCCChHHHHHHHHHHhCCcccccccccchh
Confidence            4999996 9999999999999996  899999764

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.12  E-value=0.027  Score=46.41  Aligned_cols=34  Identities=21%  Similarity=0.326  Sum_probs=30.9

Q ss_pred             cEEEECC-ChHHHHHHHHHHhCCCcEEEEccCCCC
Q psy9141           8 SVVIVGG-GLVGSLSACMFAKNQYEVNLYEAREDI   41 (379)
Q Consensus         8 dVvIVGa-GpaGl~~A~~La~~G~~V~viE~~~~~   41 (379)
                      .|+|.|| |..|..++..|.++|++|+++.|++..
T Consensus         5 kIlV~GatG~iG~~v~~~Ll~~g~~V~~~~R~~~~   39 (205)
T d1hdoa_           5 KIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSR   39 (205)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGG
T ss_pred             EEEEECCCCHHHHHHHHHHHHCcCEEEEEEcChhh
Confidence            6999995 999999999999999999999987643

>d1cjca1 c.3.1.1 (A:107-331) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=94.09  E-value=0.13  Score=43.08  Aligned_cols=36  Identities=22%  Similarity=0.220  Sum_probs=30.5

Q ss_pred             CCcEEEECCChHHHHHHHHHHhC--------------------CC-cEEEEccCCCC
Q psy9141           6 KKSVVIVGGGLVGSLSACMFAKN--------------------QY-EVNLYEAREDI   41 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La~~--------------------G~-~V~viE~~~~~   41 (379)
                      ..+|+|||+|=+++=+|..|.+.                    |. +|.++.|+...
T Consensus        39 gk~VvVIGgGNVAlD~aR~l~r~~~~l~~tdi~~~~l~~l~~~g~~~V~iv~RRg~~   95 (225)
T d1cjca1          39 CDTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQSRVKTVWIVGRRGPL   95 (225)
T ss_dssp             SSEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCCCEEEEECSSCGG
T ss_pred             CceEEEECCchhHHHHHHHHhcCHHhhcCCCCcHHHHHHHhccCCCeEEEEEEcChH
Confidence            35899999999999999999984                    54 79999988643

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=93.88  E-value=0.02  Score=45.54  Aligned_cols=33  Identities=18%  Similarity=0.319  Sum_probs=30.8

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEccCCC
Q psy9141           8 SVVIVGGGLVGSLSACMFAKNQYEVNLYEARED   40 (379)
Q Consensus         8 dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~   40 (379)
                      +|.|||-|..|...|..|+++|++|.++|+.+.
T Consensus         2 kIgiIGlG~MG~~~A~~L~~~G~~V~~~d~~~~   34 (161)
T d1vpda2           2 KVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPE   34 (161)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             EEEEEehhHHHHHHHHHHHHCCCeEEEEeCCcc
Confidence            499999999999999999999999999998764

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=93.88  E-value=0.024  Score=44.41  Aligned_cols=32  Identities=25%  Similarity=0.297  Sum_probs=28.6

Q ss_pred             cEEEECCChHHHHHHHHHHhCCC--cEEEEccCC
Q psy9141           8 SVVIVGGGLVGSLSACMFAKNQY--EVNLYEARE   39 (379)
Q Consensus         8 dVvIVGaGpaGl~~A~~La~~G~--~V~viE~~~   39 (379)
                      .|.|||+|-+|.++|+.|+.+|.  ++.++|.+.
T Consensus         3 KI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~   36 (146)
T d1hyha1           3 KIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANE   36 (146)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             eEEEECcCHHHHHHHHHHHhcCCCceEEEEeccc
Confidence            69999999999999999999886  799998764

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=93.83  E-value=0.026  Score=45.54  Aligned_cols=33  Identities=24%  Similarity=0.219  Sum_probs=28.6

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCC-cEEEEccC
Q psy9141           6 KKSVVIVGGGLVGSLSACMFAKNQY-EVNLYEAR   38 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La~~G~-~V~viE~~   38 (379)
                      .-.|+|+|+|+.|++++..++..|. +|+++|++
T Consensus        28 g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~   61 (174)
T d1jqba2          28 GSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSR   61 (174)
T ss_dssp             TCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCC
T ss_pred             CCEEEEEcCCcchhhhhhhhhcccccccccccch
Confidence            3579999999999999999998897 68888865

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=93.78  E-value=0.02  Score=44.66  Aligned_cols=32  Identities=38%  Similarity=0.398  Sum_probs=28.7

Q ss_pred             cEEEECCChHHHHHHHHHHhCCC--cEEEEccCC
Q psy9141           8 SVVIVGGGLVGSLSACMFAKNQY--EVNLYEARE   39 (379)
Q Consensus         8 dVvIVGaGpaGl~~A~~La~~G~--~V~viE~~~   39 (379)
                      +|.|||+|-+|.++|+.|+..|.  +++++|.++
T Consensus         2 KI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~   35 (142)
T d1ojua1           2 KLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAE   35 (142)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSH
T ss_pred             EEEEECcCHHHHHHHHHHHhcCcCceEEEEeccc
Confidence            59999999999999999998886  699999764

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=93.70  E-value=0.028  Score=43.91  Aligned_cols=31  Identities=19%  Similarity=0.480  Sum_probs=27.9

Q ss_pred             cEEEECC-ChHHHHHHHHHHhCCC--cEEEEccC
Q psy9141           8 SVVIVGG-GLVGSLSACMFAKNQY--EVNLYEAR   38 (379)
Q Consensus         8 dVvIVGa-GpaGl~~A~~La~~G~--~V~viE~~   38 (379)
                      +|+|||| |-+|.++|+.|+..|+  +++++|..
T Consensus         2 Kv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~   35 (144)
T d1mlda1           2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIA   35 (144)
T ss_dssp             EEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESS
T ss_pred             eEEEECCCChHHHHHHHHHHhCCccceEEEEecc
Confidence            6999996 9999999999999987  69999864

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=93.70  E-value=0.031  Score=44.60  Aligned_cols=33  Identities=24%  Similarity=0.257  Sum_probs=29.1

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEccCC
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEARE   39 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~   39 (379)
                      -.|+|+|+|+.|++++..+...|.++++++..+
T Consensus        32 ~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~   64 (168)
T d1uufa2          32 KKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSE   64 (168)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSG
T ss_pred             CEEEEeccchHHHHHHHHhhcccccchhhccch
Confidence            469999999999999998888999999988654

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=93.67  E-value=0.049  Score=40.43  Aligned_cols=36  Identities=22%  Similarity=0.248  Sum_probs=32.9

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCC
Q psy9141           6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDI   41 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~   41 (379)
                      .+.|.|+|||--|-++|.+..+.|++|.++|.++..
T Consensus        11 ~~kigIlGgGQL~rMla~aA~~lG~~v~v~d~~~~~   46 (111)
T d1kjqa2          11 ATRVMLLGSGELGKEVAIECQRLGVEVIAVDRYADA   46 (111)
T ss_dssp             CCEEEEESCSHHHHHHHHHHHTTTCEEEEEESSTTC
T ss_pred             CCEEEEEeCCHHHHHHHHHHHHCCCEEEEEcCCCCC
Confidence            467999999999999999999999999999988754

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=93.62  E-value=0.03  Score=45.10  Aligned_cols=32  Identities=25%  Similarity=0.404  Sum_probs=30.3

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEccCC
Q psy9141           8 SVVIVGGGLVGSLSACMFAKNQYEVNLYEARE   39 (379)
Q Consensus         8 dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~   39 (379)
                      +|-|||-|..|..+|..|.+.|++|.++|+.+
T Consensus         3 kIGvIGlG~MG~~ma~~L~~~G~~V~~~dr~~   34 (178)
T d1pgja2           3 DVGVVGLGVMGANLALNIAEKGFKVAVFNRTY   34 (178)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred             EEEEEeehHHHHHHHHHHHHCCCeEEEEECCH
Confidence            59999999999999999999999999999865

>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=93.45  E-value=0.038  Score=40.58  Aligned_cols=34  Identities=15%  Similarity=0.043  Sum_probs=29.7

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCcEEEEccCC
Q psy9141           6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEARE   39 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~   39 (379)
                      ..+|+|||+|.+|.=.|..|++.+.+++++-+++
T Consensus        32 gK~VlVVG~g~Sa~dia~~l~~~ak~v~~~~~r~   65 (107)
T d2gv8a2          32 GESVLVVGGASSANDLVRHLTPVAKHPIYQSLLG   65 (107)
T ss_dssp             TCCEEEECSSHHHHHHHHHHTTTSCSSEEEECTT
T ss_pred             CCeEEEECCCCCHHHHHHHHHHhcCEEEEEEecC
Confidence            4589999999999999999999988887776654

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=93.15  E-value=0.044  Score=44.13  Aligned_cols=33  Identities=12%  Similarity=0.074  Sum_probs=28.0

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCC-cEEEEccCC
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKNQY-EVNLYEARE   39 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~G~-~V~viE~~~   39 (379)
                      -.|+|+|+|+.|++++..+...|. +|++.|..+
T Consensus        30 ~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~   63 (174)
T d1e3ia2          30 STCAVFGLGCVGLSAIIGCKIAGASRIIAIDING   63 (174)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCG
T ss_pred             CEEEEECCChHHHHHHHHHHHhCCceeeeeccch
Confidence            479999999999999999999998 466777553

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=93.13  E-value=0.044  Score=44.17  Aligned_cols=32  Identities=16%  Similarity=0.066  Sum_probs=29.0

Q ss_pred             cEEEECCChHHHHHHHHHHhCCC-cEEEEccCC
Q psy9141           8 SVVIVGGGLVGSLSACMFAKNQY-EVNLYEARE   39 (379)
Q Consensus         8 dVvIVGaGpaGl~~A~~La~~G~-~V~viE~~~   39 (379)
                      .|+|+|+|+.|+++...++..|. +|+++|.++
T Consensus        32 tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~   64 (176)
T d1d1ta2          32 TCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNK   64 (176)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCSEEEEECSCG
T ss_pred             EEEEECCCchhHHHHHHHHHcCCceEEEecCcH
Confidence            59999999999999999999995 799999765

>d1lqta1 c.3.1.1 (A:109-324) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=93.12  E-value=0.25  Score=40.78  Aligned_cols=35  Identities=23%  Similarity=0.242  Sum_probs=29.4

Q ss_pred             CCcEEEECCChHHHHHHHHHH--------------------hCCC-cEEEEccCCC
Q psy9141           6 KKSVVIVGGGLVGSLSACMFA--------------------KNQY-EVNLYEARED   40 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La--------------------~~G~-~V~viE~~~~   40 (379)
                      ..+|+|||+|=+++=+|..|.                    +.|. +|+++-|+..
T Consensus        39 gk~VvVIGgGNvAlD~AR~ll~~~~~l~~tdi~~~~l~~l~r~~~~~V~iv~RRg~   94 (216)
T d1lqta1          39 GARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRPRGIQEVVIVGRRGP   94 (216)
T ss_dssp             SSEEEEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCCCEEEEECSSCG
T ss_pred             CceEEEECCCchhHhhhhhhccCHhhhccCCCcHHHHHHHhhcCCceEEEEEECCh
Confidence            458999999999999999887                    5676 6999988753

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=93.12  E-value=0.036  Score=42.98  Aligned_cols=32  Identities=31%  Similarity=0.425  Sum_probs=28.3

Q ss_pred             cEEEECCChHHHHHHHHHHhCCC--cEEEEccCC
Q psy9141           8 SVVIVGGGLVGSLSACMFAKNQY--EVNLYEARE   39 (379)
Q Consensus         8 dVvIVGaGpaGl~~A~~La~~G~--~V~viE~~~   39 (379)
                      +|.|||+|-+|.++|+.|+..++  ++.++|.++
T Consensus         2 KI~IIGaG~VG~~~a~~l~~~~l~~el~L~Di~~   35 (140)
T d1a5za1           2 KIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDK   35 (140)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCCEEEEEeccc
Confidence            59999999999999999998876  799998664

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=93.03  E-value=0.035  Score=43.97  Aligned_cols=32  Identities=19%  Similarity=0.123  Sum_probs=28.3

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEccC
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEAR   38 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~   38 (379)
                      -.|+|+|+|+.|++++..+...|.+|++++.+
T Consensus        29 ~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~   60 (168)
T d1rjwa2          29 EWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIG   60 (168)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSC
T ss_pred             CEEEEeecccchhhhhHHHhcCCCeEeccCCC
Confidence            46999999999999999999999999888754

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=92.98  E-value=0.04  Score=45.28  Aligned_cols=32  Identities=22%  Similarity=0.157  Sum_probs=26.7

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCC-cEEEEccC
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKNQY-EVNLYEAR   38 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~G~-~V~viE~~   38 (379)
                      -.|+|+|+|+.|++++..++..|. +|+++|..
T Consensus        27 ~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~   59 (195)
T d1kola2          27 STVYVAGAGPVGLAAAASARLLGAAVVIVGDLN   59 (195)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESC
T ss_pred             CEEEEECcCHHHHHHHHHHHhhcccceeeeccc
Confidence            479999999999999998887777 67777744

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=92.71  E-value=0.054  Score=42.35  Aligned_cols=32  Identities=22%  Similarity=0.092  Sum_probs=29.7

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEccCC
Q psy9141           8 SVVIVGGGLVGSLSACMFAKNQYEVNLYEARE   39 (379)
Q Consensus         8 dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~   39 (379)
                      +|.|||.|-.|..+|..|+++|++|+++++.+
T Consensus         2 kIgiIG~G~mG~~ia~~l~~~g~~v~~~~~~~   33 (152)
T d1i36a2           2 RVGFIGFGEVAQTLASRLRSRGVEVVTSLEGR   33 (152)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCEEEECCTTC
T ss_pred             EEEEEcHHHHHHHHHHHHHHCCCeEEEEcCch
Confidence            59999999999999999999999999998665

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=92.51  E-value=0.075  Score=42.42  Aligned_cols=35  Identities=9%  Similarity=0.080  Sum_probs=31.4

Q ss_pred             CCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCC
Q psy9141           5 SKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEARE   39 (379)
Q Consensus         5 ~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~   39 (379)
                      +..+|+|+|+|=++-+.+++|++.|.+|+|+.|..
T Consensus        17 ~~k~vlIlGaGGaarai~~al~~~g~~i~I~nRt~   51 (170)
T d1nyta1          17 PGLRILLIGAGGASRGVLLPLLSLDCAVTITNRTV   51 (170)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred             CCCEEEEECCcHHHHHHHHHhcccceEEEeccchH
Confidence            34689999999999999999999999999998764

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=92.46  E-value=0.047  Score=37.70  Aligned_cols=34  Identities=15%  Similarity=0.094  Sum_probs=31.1

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEccCCCC
Q psy9141           8 SVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDI   41 (379)
Q Consensus         8 dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~   41 (379)
                      .|.|+|||-=|-+++.+..+.|++|.+++.++..
T Consensus         3 ~vgIlG~GQLgrMl~~Aa~~LG~~v~vldp~~~~   36 (78)
T d3etja2           3 QVCVLGNGQLGRMLRQAGEPLGIAVWPVGLDAEP   36 (78)
T ss_dssp             EEEEEBCSHHHHHHHHHHGGGTEEEEEECTTSCG
T ss_pred             EEEEEcCCHHHHHHHHHHHHcCCEEEEEcCCCCC
Confidence            6999999999999999999999999999976543

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=92.11  E-value=0.057  Score=45.89  Aligned_cols=35  Identities=23%  Similarity=0.294  Sum_probs=31.3

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCC-cEEEEccCCC
Q psy9141           6 KKSVVIVGGGLVGSLSACMFAKNQY-EVNLYEARED   40 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La~~G~-~V~viE~~~~   40 (379)
                      +..|+|||+|-.|..+|..|++.|. +++|+|.+..
T Consensus        30 ~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~V   65 (247)
T d1jw9b_          30 DSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDTV   65 (247)
T ss_dssp             HCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCBC
T ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCccc
Confidence            3589999999999999999999999 7999997653

>d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=91.77  E-value=0.11  Score=39.30  Aligned_cols=41  Identities=22%  Similarity=0.315  Sum_probs=33.7

Q ss_pred             CCC-CCCCcEEEECCCh-----------HHHHHHHHHHhCCCcEEEEccCCCC
Q psy9141           1 MKC-NSKKSVVIVGGGL-----------VGSLSACMFAKNQYEVNLYEAREDI   41 (379)
Q Consensus         1 M~~-m~~~dVvIVGaGp-----------aGl~~A~~La~~G~~V~viE~~~~~   41 (379)
                      |+. .....|+|+|+||           ++..++.+|++.|++++++..++.-
T Consensus         1 mp~~~~~kkvlilGsGp~~IGq~~EfDy~~~~a~~alke~g~~~iliN~NP~T   53 (127)
T d1a9xa3           1 MPKRTDIKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVINVNSNPAT   53 (127)
T ss_dssp             CCCCSSCCEEEEECCCSCBTTBCTHHHHHHHHHHHHHHHHTCEEEEECSCTTC
T ss_pred             CCCCCCCCEEEEECCCcCcccccchhHHHHHHHHHHHHHcCCeEEEecCchHh
Confidence            542 3446899999997           6888899999999999999988744

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=91.43  E-value=0.1  Score=44.55  Aligned_cols=36  Identities=14%  Similarity=0.193  Sum_probs=32.3

Q ss_pred             CCcEEEECC-ChHHHHHHHHHHhCCCcEEEEccCCCC
Q psy9141           6 KKSVVIVGG-GLVGSLSACMFAKNQYEVNLYEAREDI   41 (379)
Q Consensus         6 ~~dVvIVGa-GpaGl~~A~~La~~G~~V~viE~~~~~   41 (379)
                      +..|+|+|| |..|-.++..|.+.|++|+++.|.+..
T Consensus         3 kkKILVtGatG~iG~~l~~~L~~~G~~V~~l~R~~~~   39 (307)
T d1qyca_           3 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTA   39 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCCT
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCeEEEEECCCcc
Confidence            468999997 999999999999999999999987643

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=91.39  E-value=0.076  Score=42.55  Aligned_cols=33  Identities=12%  Similarity=0.032  Sum_probs=28.0

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCC-cEEEEccCC
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKNQY-EVNLYEARE   39 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~G~-~V~viE~~~   39 (379)
                      -.|+|+|+|+.|++++..++..|. +|+++|.++
T Consensus        29 ~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~   62 (174)
T d1p0fa2          29 STCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHK   62 (174)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCG
T ss_pred             CEEEEECCCchhHHHHHHHHHcCCceeeccCChH
Confidence            359999999999999999999986 688887653

>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=91.28  E-value=0.11  Score=40.20  Aligned_cols=31  Identities=29%  Similarity=0.417  Sum_probs=27.7

Q ss_pred             cEEEEC-CChHHHHHHHHHHhCCC--cEEEEccC
Q psy9141           8 SVVIVG-GGLVGSLSACMFAKNQY--EVNLYEAR   38 (379)
Q Consensus         8 dVvIVG-aGpaGl~~A~~La~~G~--~V~viE~~   38 (379)
                      +|.||| +|-+|.++|+.|...++  ++.++|..
T Consensus         2 KV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di~   35 (142)
T d1o6za1           2 KVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIP   35 (142)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCG
T ss_pred             eEEEECCCCcHHHHHHHHHHhCCCCCEEEEEecC
Confidence            699999 69999999999999987  69999854

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=91.12  E-value=0.12  Score=41.12  Aligned_cols=35  Identities=14%  Similarity=0.400  Sum_probs=30.7

Q ss_pred             CCCcEEEECCChHHHHHHHHHHhCCC-cEEEEccCC
Q psy9141           5 SKKSVVIVGGGLVGSLSACMFAKNQY-EVNLYEARE   39 (379)
Q Consensus         5 ~~~dVvIVGaGpaGl~~A~~La~~G~-~V~viE~~~   39 (379)
                      ++.+|+|+|+|=++-+.+++|.+.|. ++.|+.|+.
T Consensus        16 ~~~~vlIlGaGGaarai~~aL~~~g~~~I~I~nR~~   51 (167)
T d1npya1          16 KNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNV   51 (167)
T ss_dssp             TTSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCH
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCCEEEEecccH
Confidence            35689999999999999999999997 799987764

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=90.80  E-value=0.12  Score=44.51  Aligned_cols=35  Identities=26%  Similarity=0.234  Sum_probs=31.1

Q ss_pred             CCcEEEECC-ChHHHHHHHHHHhCCCcEEEEccCCC
Q psy9141           6 KKSVVIVGG-GLVGSLSACMFAKNQYEVNLYEARED   40 (379)
Q Consensus         6 ~~dVvIVGa-GpaGl~~A~~La~~G~~V~viE~~~~   40 (379)
                      +..|+|+|| |..|..++..|.++|++|+++.|.+.
T Consensus         3 k~KILVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~   38 (312)
T d1qyda_           3 KSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEV   38 (312)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCc
Confidence            456999997 99999999999999999999988653

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.70  E-value=0.12  Score=40.94  Aligned_cols=34  Identities=26%  Similarity=0.159  Sum_probs=31.9

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCcEEEEccCC
Q psy9141           6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEARE   39 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~   39 (379)
                      -..|+|||-|.+|-.+|..|+..|.+|+++|.+|
T Consensus        24 Gk~v~V~GyG~iG~g~A~~~rg~G~~V~v~e~dp   57 (163)
T d1li4a1          24 GKVAVVAGYGDVGKGCAQALRGFGARVIITEIDP   57 (163)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CCEEEEeccccccHHHHHHHHhCCCeeEeeeccc
Confidence            4579999999999999999999999999999886

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=90.28  E-value=0.1  Score=41.62  Aligned_cols=30  Identities=20%  Similarity=0.112  Sum_probs=25.1

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCcEEEE
Q psy9141           6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLY   35 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~vi   35 (379)
                      .-.|+|+|+|+.|++++..+...|.+++++
T Consensus        29 g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~   58 (174)
T d1f8fa2          29 ASSFVTWGAGAVGLSALLAAKVCGASIIIA   58 (174)
T ss_dssp             TCEEEEESCSHHHHHHHHHHHHHTCSEEEE
T ss_pred             CCEEEEeCCCHHHhhhhhcccccccceeee
Confidence            347999999999999999998888865544

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=90.27  E-value=0.1  Score=41.19  Aligned_cols=35  Identities=31%  Similarity=0.179  Sum_probs=32.5

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCC
Q psy9141           6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEARED   40 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~   40 (379)
                      -..++|+|-|.+|-.+|..|+..|.+|+|.|.+|.
T Consensus        23 Gk~vvV~GYG~vGrG~A~~~rg~Ga~V~V~E~DPi   57 (163)
T d1v8ba1          23 GKIVVICGYGDVGKGCASSMKGLGARVYITEIDPI   57 (163)
T ss_dssp             TSEEEEECCSHHHHHHHHHHHHHTCEEEEECSCHH
T ss_pred             CCEEEEecccccchhHHHHHHhCCCEEEEEecCch
Confidence            45899999999999999999999999999999873

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=89.72  E-value=0.21  Score=40.36  Aligned_cols=36  Identities=31%  Similarity=0.319  Sum_probs=32.2

Q ss_pred             CCCCcEEEEC-CChHHHHHHHHHHhCCCcEEEEccCC
Q psy9141           4 NSKKSVVIVG-GGLVGSLSACMFAKNQYEVNLYEARE   39 (379)
Q Consensus         4 m~~~dVvIVG-aGpaGl~~A~~La~~G~~V~viE~~~   39 (379)
                      .+...|+|.| +|-.|..+|..|++.|.+|+++.|+.
T Consensus        21 l~gK~vlItGasgGIG~~ia~~la~~G~~V~~~~r~~   57 (191)
T d1luaa1          21 VKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKL   57 (191)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHhhccchhhcccch
Confidence            4567899999 59999999999999999999999885

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=89.41  E-value=0.2  Score=39.47  Aligned_cols=35  Identities=23%  Similarity=0.284  Sum_probs=30.2

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHhCCC-cEEEEccC
Q psy9141           4 NSKKSVVIVGGGLVGSLSACMFAKNQY-EVNLYEAR   38 (379)
Q Consensus         4 m~~~dVvIVGaGpaGl~~A~~La~~G~-~V~viE~~   38 (379)
                      .+...|+|||+|-.|-..|..|...|. +++|+-|.
T Consensus        22 l~~~~ilviGaG~~g~~v~~~L~~~g~~~i~v~nRt   57 (159)
T d1gpja2          22 LHDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRT   57 (159)
T ss_dssp             CTTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSS
T ss_pred             cccCeEEEECCCHHHHHHHHHHHhcCCcEEEEEcCc
Confidence            345689999999999999999999998 58888655

>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=89.39  E-value=0.15  Score=39.48  Aligned_cols=31  Identities=26%  Similarity=0.475  Sum_probs=25.5

Q ss_pred             cEEEEC-CChHHHHHHHHHHh-CC--CcEEEEccC
Q psy9141           8 SVVIVG-GGLVGSLSACMFAK-NQ--YEVNLYEAR   38 (379)
Q Consensus         8 dVvIVG-aGpaGl~~A~~La~-~G--~~V~viE~~   38 (379)
                      +|.||| +|-+|.++|+.|+. .+  .++.++|..
T Consensus         2 KV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~   36 (145)
T d2cmda1           2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIA   36 (145)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSS
T ss_pred             EEEEEcCCChHHHHHHHHHHhCCCCCcEEEEeccc
Confidence            599999 59999999998864 34  589999854

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=89.33  E-value=0.16  Score=39.49  Aligned_cols=32  Identities=16%  Similarity=0.117  Sum_probs=29.6

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEccCC
Q psy9141           8 SVVIVGGGLVGSLSACMFAKNQYEVNLYEARE   39 (379)
Q Consensus         8 dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~   39 (379)
                      +|.|||+|-.|.++|..|.+.|+++++.++.+
T Consensus         2 kIg~IG~G~mG~al~~~l~~~~~~i~v~~r~~   33 (152)
T d2ahra2           2 KIGIIGVGKMASAIIKGLKQTPHELIISGSSL   33 (152)
T ss_dssp             EEEEECCSHHHHHHHHHHTTSSCEEEEECSSH
T ss_pred             EEEEEeccHHHHHHHHHHHhCCCeEEEEcChH
Confidence            59999999999999999999999999998764

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=89.29  E-value=0.19  Score=39.80  Aligned_cols=32  Identities=13%  Similarity=0.113  Sum_probs=26.8

Q ss_pred             cEEEECCChHHHHHHHHHHhCCC-cEEEEccCC
Q psy9141           8 SVVIVGGGLVGSLSACMFAKNQY-EVNLYEARE   39 (379)
Q Consensus         8 dVvIVGaGpaGl~~A~~La~~G~-~V~viE~~~   39 (379)
                      .|+|+|+|+.|++++..++..|- +|+++++.+
T Consensus        31 ~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~   63 (175)
T d1cdoa2          31 TCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNP   63 (175)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCSEEEEECSCG
T ss_pred             EEEEEecCCccchHHHHHHHHhhchheeecchH
Confidence            48899999999999999998876 577777654

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=89.25  E-value=0.24  Score=39.68  Aligned_cols=35  Identities=23%  Similarity=0.415  Sum_probs=30.8

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCC-cEEEEccCCC
Q psy9141           6 KKSVVIVGGGLVGSLSACMFAKNQY-EVNLYEARED   40 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La~~G~-~V~viE~~~~   40 (379)
                      ..+|+|+|+|=+|-+.+.+|.+.|. +++|+.|.+.
T Consensus        18 ~k~vlIlGaGGaarai~~al~~~g~~~i~i~nR~~~   53 (182)
T d1vi2a1          18 GKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDE   53 (182)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSST
T ss_pred             CCEEEEECCcHHHHHHHHHHhhcCCceEeeeccchH
Confidence            4689999999999999999999988 6889988753

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=89.21  E-value=0.19  Score=39.91  Aligned_cols=32  Identities=13%  Similarity=0.026  Sum_probs=27.6

Q ss_pred             cEEEECCChHHHHHHHHHHhCCC-cEEEEccCC
Q psy9141           8 SVVIVGGGLVGSLSACMFAKNQY-EVNLYEARE   39 (379)
Q Consensus         8 dVvIVGaGpaGl~~A~~La~~G~-~V~viE~~~   39 (379)
                      .|+|+|+|..|++++..++..|. +|++++.++
T Consensus        31 tVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~   63 (176)
T d2jhfa2          31 TCAVFGLGGVGLSVIMGCKAAGAARIIGVDINK   63 (176)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCSEEEEECSCG
T ss_pred             EEEEECCCCcHHHHHHHHHHcCCceEEeecCcH
Confidence            48999999999999999999985 788887654

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=88.86  E-value=0.14  Score=40.58  Aligned_cols=32  Identities=22%  Similarity=0.273  Sum_probs=25.9

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCC-cEEEEccC
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKNQY-EVNLYEAR   38 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~G~-~V~viE~~   38 (379)
                      -.|+|+|+|+.|++++..++..|. +|++.|++
T Consensus        34 ~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~   66 (172)
T d1h2ba2          34 AYVAIVGVGGLGHIAVQLLKVMTPATVIALDVK   66 (172)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCCCEEEEEESS
T ss_pred             CEEEEeCCChHHHHHHHHHHhhcCcccccccch
Confidence            469999999999999988887775 56666654

>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose-3', 5'-epimerase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=88.75  E-value=0.21  Score=44.42  Aligned_cols=35  Identities=20%  Similarity=0.227  Sum_probs=31.1

Q ss_pred             CcEEEEC-CChHHHHHHHHHHhCCCcEEEEccCCCC
Q psy9141           7 KSVVIVG-GGLVGSLSACMFAKNQYEVNLYEAREDI   41 (379)
Q Consensus         7 ~dVvIVG-aGpaGl~~A~~La~~G~~V~viE~~~~~   41 (379)
                      ..|+|.| +|..|..++..|.+.|++|+++++....
T Consensus        16 MKILVTGgsGfIGs~lv~~L~~~g~~V~~~d~~~~~   51 (363)
T d2c5aa1          16 LKISITGAGGFIASHIARRLKHEGHYVIASDWKKNE   51 (363)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCS
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCCcc
Confidence            4699999 8999999999999999999999976543

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=88.56  E-value=0.17  Score=39.28  Aligned_cols=32  Identities=22%  Similarity=0.371  Sum_probs=28.2

Q ss_pred             cEEEECCChHHHHHHHHHHhCC-CcEEEEccCC
Q psy9141           8 SVVIVGGGLVGSLSACMFAKNQ-YEVNLYEARE   39 (379)
Q Consensus         8 dVvIVGaGpaGl~~A~~La~~G-~~V~viE~~~   39 (379)
                      +|.|||+|--|.+.|..|.+.| ++|.+++|++
T Consensus         2 kI~fIG~G~MG~ai~~~l~~~~~~~i~v~~r~~   34 (152)
T d1yqga2           2 NVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGA   34 (152)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSCEEEEECSSH
T ss_pred             EEEEEcCcHHHHHHHHHHHHCCCCcEEEEeCCh
Confidence            5999999999999999888776 8999998774

>d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=88.05  E-value=0.15  Score=39.92  Aligned_cols=25  Identities=20%  Similarity=0.282  Sum_probs=21.9

Q ss_pred             CCcEEEECC-ChHHHHHHHHHHhCCC
Q psy9141           6 KKSVVIVGG-GLVGSLSACMFAKNQY   30 (379)
Q Consensus         6 ~~dVvIVGa-GpaGl~~A~~La~~G~   30 (379)
                      +..|.|||| |.+|.++|+.|++.++
T Consensus         4 p~KV~IiGA~G~VG~~~a~~l~~~~l   29 (154)
T d1y7ta1           4 PVRVAVTGAAGQIGYSLLFRIAAGEM   29 (154)
T ss_dssp             CEEEEESSTTSHHHHHHHHHHHTTTT
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhccc
Confidence            448999997 9999999999998754

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=87.72  E-value=0.18  Score=39.76  Aligned_cols=32  Identities=19%  Similarity=0.326  Sum_probs=26.6

Q ss_pred             CcEEEECC-ChHHHHHHHHHHhCCC-cEEEEccC
Q psy9141           7 KSVVIVGG-GLVGSLSACMFAKNQY-EVNLYEAR   38 (379)
Q Consensus         7 ~dVvIVGa-GpaGl~~A~~La~~G~-~V~viE~~   38 (379)
                      -.|+|+|+ |+.|++++..++..|. +|++++++
T Consensus        29 ~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~   62 (170)
T d1jvba2          29 KTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVR   62 (170)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESS
T ss_pred             CEEEEEeccccceeeeeecccccccccccccccc
Confidence            36999995 9999999988888885 78888755

>d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=87.43  E-value=0.51  Score=35.02  Aligned_cols=36  Identities=14%  Similarity=0.405  Sum_probs=31.4

Q ss_pred             CCcEEEECCCh-----------HHHHHHHHHHhCCCcEEEEccCCCC
Q psy9141           6 KKSVVIVGGGL-----------VGSLSACMFAKNQYEVNLYEAREDI   41 (379)
Q Consensus         6 ~~dVvIVGaGp-----------aGl~~A~~La~~G~~V~viE~~~~~   41 (379)
                      ...|+|||+||           ++..++.+|.+.|++++++.-+|.-
T Consensus         4 ~kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~~g~~~IliN~NPeT   50 (121)
T d1a9xa4           4 REKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIMVNCNPET   50 (121)
T ss_dssp             SCEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHTTCEEEEECCCTTS
T ss_pred             CCEEEEECCCcCcccccchhhHHHHHHHHHHHhcCCeEEEEecChhh
Confidence            45799999996           6888999999999999999988754

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=86.63  E-value=0.29  Score=38.99  Aligned_cols=34  Identities=24%  Similarity=0.312  Sum_probs=29.6

Q ss_pred             CCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCC
Q psy9141           5 SKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEARE   39 (379)
Q Consensus         5 ~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~   39 (379)
                      +..+|+|+|+|=++-+++++|++.| +|.|+-|..
T Consensus        17 ~~k~vlIlGaGG~arai~~aL~~~~-~i~I~nR~~   50 (177)
T d1nvta1          17 KDKNIVIYGAGGAARAVAFELAKDN-NIIIANRTV   50 (177)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHTSSS-EEEEECSSH
T ss_pred             CCCEEEEECCcHHHHHHHHHHcccc-ceeeehhhh
Confidence            4568999999999999999998888 899998764

>d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=86.29  E-value=0.18  Score=39.45  Aligned_cols=24  Identities=13%  Similarity=0.207  Sum_probs=21.1

Q ss_pred             CCcEEEECC-ChHHHHHHHHHHhCC
Q psy9141           6 KKSVVIVGG-GLVGSLSACMFAKNQ   29 (379)
Q Consensus         6 ~~dVvIVGa-GpaGl~~A~~La~~G   29 (379)
                      +.+|.|||| |.+|.++|+.|+..+
T Consensus         3 p~KV~IiGA~G~VG~~la~~l~~~~   27 (154)
T d5mdha1           3 PIRVLVTGAAGQIAYSLLYSIGNGS   27 (154)
T ss_dssp             CEEEEESSTTSHHHHTTHHHHHTTT
T ss_pred             ceEEEEECCCCHHHHHHHHHHHHHH
Confidence            458999996 999999999998764

>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: DTDP-4-dehydrorhamnose reductase RfbD
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=85.86  E-value=0.23  Score=42.04  Aligned_cols=32  Identities=19%  Similarity=0.299  Sum_probs=29.9

Q ss_pred             cEEEECC-ChHHHHHHHHHHhCCCcEEEEccCC
Q psy9141           8 SVVIVGG-GLVGSLSACMFAKNQYEVNLYEARE   39 (379)
Q Consensus         8 dVvIVGa-GpaGl~~A~~La~~G~~V~viE~~~   39 (379)
                      +|+|.|| |..|..++..|.+.|++|+.+++..
T Consensus         3 KIlItGasGfiG~~l~~~L~~~g~~Vi~~~r~~   35 (281)
T d1vl0a_           3 KILITGANGQLGREIQKQLKGKNVEVIPTDVQD   35 (281)
T ss_dssp             EEEEESTTSHHHHHHHHHHTTSSEEEEEECTTT
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCCEEEEeechh
Confidence            5999998 9999999999999999999999865

>d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Transcriptional repressor Rex, C-terminal domain
domain: Transcriptional repressor Rex, C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=85.36  E-value=0.13  Score=38.81  Aligned_cols=37  Identities=24%  Similarity=0.305  Sum_probs=28.3

Q ss_pred             CCCcEEEECCChHHHHHHHHHHhC-CCc-EEEEccCCCC
Q psy9141           5 SKKSVVIVGGGLVGSLSACMFAKN-QYE-VNLYEAREDI   41 (379)
Q Consensus         5 ~~~dVvIVGaGpaGl~~A~~La~~-G~~-V~viE~~~~~   41 (379)
                      +++.|+|+|||-+|-+++.++.+. +++ |..+|.++..
T Consensus         2 ~~~~v~I~GaG~~G~~l~~~l~~~~~~~iv~fiDdd~~k   40 (126)
T d2dt5a2           2 RKWGLCIVGMGRLGSALADYPGFGESFELRGFFDVDPEK   40 (126)
T ss_dssp             SCEEEEEECCSHHHHHHHHCSCCCSSEEEEEEEESCTTT
T ss_pred             CCceEEEEcCCHHHHHHHHhHhhcCCcEEEEEEeCchHh
Confidence            457899999999999998877543 565 6778876644

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=85.34  E-value=0.36  Score=38.29  Aligned_cols=34  Identities=18%  Similarity=0.137  Sum_probs=30.4

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCcEEEEccCC
Q psy9141           6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEARE   39 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~   39 (379)
                      ...|+|+|+|=++-+++.+|.+.+.+|+|+.|..
T Consensus        18 ~k~vlIlGaGGaarai~~aL~~~~~~i~I~nR~~   51 (171)
T d1p77a1          18 NQHVLILGAGGATKGVLLPLLQAQQNIVLANRTF   51 (171)
T ss_dssp             TCEEEEECCSHHHHTTHHHHHHTTCEEEEEESSH
T ss_pred             CCEEEEECCcHHHHHHHHHHcccCceeeeccchH
Confidence            4589999999999999999999888999997764

>d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=84.81  E-value=0.49  Score=40.61  Aligned_cols=36  Identities=19%  Similarity=-0.067  Sum_probs=30.6

Q ss_pred             CCCCCcEEEECCC---hHHHHHHHHHHhCCCcEEEEccC
Q psy9141           3 CNSKKSVVIVGGG---LVGSLSACMFAKNQYEVNLYEAR   38 (379)
Q Consensus         3 ~m~~~dVvIVGaG---paGl~~A~~La~~G~~V~viE~~   38 (379)
                      +++..-++|.||+   =.|.++|..|++.|.+|++..+.
T Consensus         5 ~L~gK~alVTGass~~GIG~aiA~~la~~Ga~Vvi~~~~   43 (297)
T d1d7oa_           5 DLRGKRAFIAGIADDNGYGWAVAKSLAAAGAEILVGTWV   43 (297)
T ss_dssp             CCTTCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEEEH
T ss_pred             CCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCc
Confidence            3666789999975   47999999999999999998765

>d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Thermus thermophilus [TaxId: 274]

Probab=84.22  E-value=0.49  Score=39.85  Aligned_cols=36  Identities=25%  Similarity=0.191  Sum_probs=29.5

Q ss_pred             CCCCcEEEECCC---hHHHHHHHHHHhCCCcEEEEccCC
Q psy9141           4 NSKKSVVIVGGG---LVGSLSACMFAKNQYEVNLYEARE   39 (379)
Q Consensus         4 m~~~dVvIVGaG---paGl~~A~~La~~G~~V~viE~~~   39 (379)
                      ++..-++|.||+   =.|.++|..|++.|.+|++.++..
T Consensus         6 L~gK~alITGas~~~GIG~aiA~~la~~Ga~V~i~~~~~   44 (256)
T d1ulua_           6 LSGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAE   44 (256)
T ss_dssp             CTTCEEEEESCCCSSSHHHHHHHHHHHTTCEEEEEESSG
T ss_pred             CCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCcH
Confidence            555678999863   269999999999999999988764

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=84.22  E-value=0.3  Score=36.61  Aligned_cols=31  Identities=23%  Similarity=0.090  Sum_probs=26.7

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEccCCC
Q psy9141           8 SVVIVGGGLVGSLSACMFAKNQYEVNLYEARED   40 (379)
Q Consensus         8 dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~   40 (379)
                      +|+|+|.|..|..++..|.  +.+|.++|.++.
T Consensus         2 HivI~G~g~~g~~l~~~L~--~~~i~vi~~d~~   32 (129)
T d2fy8a1           2 HVVICGWSESTLECLRELR--GSEVFVLAEDEN   32 (129)
T ss_dssp             CEEEESCCHHHHHHHHTSC--GGGEEEEESCTT
T ss_pred             EEEEECCCHHHHHHHHHHc--CCCCEEEEcchH
Confidence            6999999999999999994  567888987764

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=84.19  E-value=0.41  Score=37.67  Aligned_cols=32  Identities=13%  Similarity=-0.017  Sum_probs=25.4

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCc-EEEEccC
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKNQYE-VNLYEAR   38 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~G~~-V~viE~~   38 (379)
                      -.|+|+|+|..|++++..++..|.+ |++.+.+
T Consensus        30 ~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~   62 (176)
T d2fzwa2          30 SVCAVFGLGGVGLAVIMGCKVAGASRIIGVDIN   62 (176)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEECSC
T ss_pred             CEEEEecchhHHHHHHHHHHHHhcCceEEEccc
Confidence            3589999999999999999989965 5555543

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.82  E-value=0.49  Score=37.29  Aligned_cols=32  Identities=19%  Similarity=0.179  Sum_probs=27.0

Q ss_pred             CcEEEECC-ChHHHHHHHHHHhCCCcEEEEccC
Q psy9141           7 KSVVIVGG-GLVGSLSACMFAKNQYEVNLYEAR   38 (379)
Q Consensus         7 ~dVvIVGa-GpaGl~~A~~La~~G~~V~viE~~   38 (379)
                      -.|+|+|| |++|+++...+...|.+|+++...
T Consensus        30 ~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~   62 (174)
T d1yb5a2          30 ESVLVHGASGGVGLAACQIARAYGLKILGTAGT   62 (174)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CEEEEEeccccccccccccccccCccccccccc
Confidence            35999996 999999988888889999887643

>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: UBA3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.69  E-value=0.43  Score=43.77  Aligned_cols=34  Identities=15%  Similarity=0.272  Sum_probs=31.1

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCC-cEEEEccCCC
Q psy9141           7 KSVVIVGGGLVGSLSACMFAKNQY-EVNLYEARED   40 (379)
Q Consensus         7 ~dVvIVGaGpaGl~~A~~La~~G~-~V~viE~~~~   40 (379)
                      .+|+|||+|-.|+.+|..|++.|+ +++|+|.+..
T Consensus        38 ~kVlvvG~GglG~ei~k~L~~~Gvg~i~lvD~D~V   72 (426)
T d1yovb1          38 CKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTI   72 (426)
T ss_dssp             CCEEEECSSTTHHHHHHHHHTTTCCCEEEECCCBC
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCeEEEEECCCc
Confidence            479999999999999999999999 8999997753

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=83.48  E-value=0.74  Score=36.77  Aligned_cols=36  Identities=17%  Similarity=0.245  Sum_probs=32.3

Q ss_pred             CCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCC
Q psy9141           5 SKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEARED   40 (379)
Q Consensus         5 ~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~   40 (379)
                      ....|.|||.|..|-..|..|...|.+|..+++.+.
T Consensus        41 ~gk~vgIiG~G~IG~~va~~l~~~g~~v~~~d~~~~   76 (181)
T d1qp8a1          41 QGEKVAVLGLGEIGTRVGKILAALGAQVRGFSRTPK   76 (181)
T ss_dssp             TTCEEEEESCSTHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             cCceEEEeccccccccceeeeecccccccccccccc
Confidence            345799999999999999999999999999998753

>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Negative transcriptional regulator NmrA
species: Aspergillus nidulans [TaxId: 162425]

Probab=83.20  E-value=0.73  Score=40.38  Aligned_cols=35  Identities=23%  Similarity=0.189  Sum_probs=31.1

Q ss_pred             CCCcEEEECC-ChHHHHHHHHHHhCCCcEEEEccCC
Q psy9141           5 SKKSVVIVGG-GLVGSLSACMFAKNQYEVNLYEARE   39 (379)
Q Consensus         5 ~~~dVvIVGa-GpaGl~~A~~La~~G~~V~viE~~~   39 (379)
                      ++..|+|+|| |..|..++..|.+.|++|.++-|++
T Consensus         2 ~kktIlVtGatG~iG~~lv~~Ll~~G~~V~~l~R~~   37 (350)
T d1xgka_           2 QKKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSL   37 (350)
T ss_dssp             CCCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCS
T ss_pred             CCCEEEEECCChHHHHHHHHHHHhCCCeEEEEECCc
Confidence            3567999996 9999999999999999999997764

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=82.82  E-value=0.46  Score=37.47  Aligned_cols=32  Identities=16%  Similarity=0.196  Sum_probs=26.9

Q ss_pred             cEEEECC-ChHHHHHHHHHHhCCCcEEEEccCC
Q psy9141           8 SVVIVGG-GLVGSLSACMFAKNQYEVNLYEARE   39 (379)
Q Consensus         8 dVvIVGa-GpaGl~~A~~La~~G~~V~viE~~~   39 (379)
                      .|+|.|| |+.|+++...+...|.+|+.+++.+
T Consensus        30 ~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~~   62 (171)
T d1iz0a2          30 KVLVQAAAGALGTAAVQVARAMGLRVLAAASRP   62 (171)
T ss_dssp             EEEESSTTBHHHHHHHHHHHHTTCEEEEEESSG
T ss_pred             EEEEEeccccchhhhhhhhcccccccccccccc
Confidence            4788796 9999999988888899999887653

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=82.15  E-value=0.57  Score=33.27  Aligned_cols=33  Identities=15%  Similarity=0.254  Sum_probs=28.5

Q ss_pred             CCcEEEECCChHHHHH-HHHHHhCCCcEEEEccC
Q psy9141           6 KKSVVIVGGGLVGSLS-ACMFAKNQYEVNLYEAR   38 (379)
Q Consensus         6 ~~dVvIVGaGpaGl~~-A~~La~~G~~V~viE~~   38 (379)
                      ...|-+||-|=+|+++ |..|.+.|++|+-.|..
T Consensus         8 ~~~ihfiGigG~GMs~LA~~L~~~G~~VsGSD~~   41 (96)
T d1p3da1           8 VQQIHFIGIGGAGMSGIAEILLNEGYQISGSDIA   41 (96)
T ss_dssp             CCEEEEETTTSTTHHHHHHHHHHHTCEEEEEESC
T ss_pred             CCEEEEEEECHHHHHHHHHHHHhCCCEEEEEeCC
Confidence            3579999988888666 99999999999998865

>d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Malate oxidoreductase (malic enzyme)
species: Thermotoga maritima [TaxId: 2336]

Probab=82.05  E-value=0.74  Score=38.03  Aligned_cols=39  Identities=15%  Similarity=0.091  Sum_probs=33.3

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHhCCC-cEEEEccCCCCC
Q psy9141           4 NSKKSVVIVGGGLVGSLSACMFAKNQY-EVNLYEAREDIR   42 (379)
Q Consensus         4 m~~~dVvIVGaGpaGl~~A~~La~~G~-~V~viE~~~~~~   42 (379)
                      +++..|+|.|||-+|+..|..|.+.+. ++.++|+.-...
T Consensus        24 l~d~riv~~GAGsAg~gia~~l~~~~~~~i~~~D~~GLi~   63 (222)
T d1vl6a1          24 IEEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRKGILN   63 (222)
T ss_dssp             TTTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTEECC
T ss_pred             hhhcEEEEEChHHHHHHHHHHHHHhcccceEeecceeEEE
Confidence            457789999999999999999988876 699999886554

>d1pn0a3 d.16.1.2 (A:241-341) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}

class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: PHBH-like
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=82.01  E-value=0.48  Score=34.02  Aligned_cols=42  Identities=19%  Similarity=0.215  Sum_probs=32.0

Q ss_pred             ccccccceeeecCCCCeEEEEEecCCCceeeecCCCCCCChh
Q psy9141         193 VWLYKNRLLSSVPEVRKRISLRAQSLKSLMNFPRADQGGDKR  234 (379)
Q Consensus       193 ~~~~p~~~~~~~p~~~~~~~~~~~~~~~~~~~p~~~~~~~~~  234 (379)
                      |.+++....+.|||.+..+.+.+..+|.+|.+|+|.....+.
T Consensus         8 WgVmD~~~~TdFPDiR~~~~I~S~~~G~vl~IPRE~~l~R~Y   49 (101)
T d1pn0a3           8 WGVLDAVPASNFPDIRSRCAIHSAESGSIMIIPRENNLVRFY   49 (101)
T ss_dssp             EEEEEEEEECCCTTTTSEEEEECSSSCEEEEEECSTTCEEEE
T ss_pred             EEEEEeEEecCCCCCceEEEEEeCCCCcEEEEECCCCcEEEE
Confidence            344444566779999999999998889999999987544433

>d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=81.66  E-value=0.56  Score=38.24  Aligned_cols=36  Identities=22%  Similarity=0.296  Sum_probs=31.0

Q ss_pred             CCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCC
Q psy9141           5 SKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEARED   40 (379)
Q Consensus         5 ~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~   40 (379)
                      +..+|+|||+|-+|.=+|..|++.+.+++++=+.+.
T Consensus        31 ~gK~V~VvG~G~Sa~dia~~~~~~~~~~~~~~~~~~   66 (235)
T d1w4xa2          31 SGQRVGVIGTGSSGIQVSPQIAKQAAELFVFQRTPH   66 (235)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHHHBSEEEEEESSCC
T ss_pred             CCCEEEEECCCccHHHHHHHHHhhhccccccccccc
Confidence            346899999999999999999999998888766653

>d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

Probab=81.10  E-value=0.78  Score=36.44  Aligned_cols=24  Identities=13%  Similarity=0.314  Sum_probs=21.0

Q ss_pred             CCcEEEECC-ChHHHHHHHHHHhCC
Q psy9141           6 KKSVVIVGG-GLVGSLSACMFAKNQ   29 (379)
Q Consensus         6 ~~dVvIVGa-GpaGl~~A~~La~~G   29 (379)
                      ...|.|+|| |..|.++|+.|++..
T Consensus        24 ~~kV~I~GA~G~Ig~~l~~~La~g~   48 (175)
T d7mdha1          24 LVNIAVSGAAGMISNHLLFKLASGE   48 (175)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHTT
T ss_pred             CcEEEEECCCcHHHHHHHHHHHcCc
Confidence            457999996 999999999999853

>d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha-hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=80.37  E-value=1  Score=37.45  Aligned_cols=32  Identities=16%  Similarity=0.236  Sum_probs=26.3

Q ss_pred             EEEECC-ChHHHHHHHHHHhCCCcEEEEccCCC
Q psy9141           9 VVIVGG-GLVGSLSACMFAKNQYEVNLYEARED   40 (379)
Q Consensus         9 VvIVGa-GpaGl~~A~~La~~G~~V~viE~~~~   40 (379)
                      |+|.|| +=.|.++|..|++.|.+|++++++..
T Consensus         4 vlITGas~GIG~aiA~~la~~Ga~V~~~~~~~~   36 (257)
T d1fjha_           4 IVISGCATGIGAATRKVLEAAGHQIVGIDIRDA   36 (257)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             EEEeCCCCHHHHHHHHHHHHCCCEEEEEECChH
Confidence            455574 55799999999999999999998753

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

Probab=80.34  E-value=0.97  Score=37.72  Aligned_cols=36  Identities=25%  Similarity=0.328  Sum_probs=29.8

Q ss_pred             CCCCcEEEECC-ChHHHHHHHHHHhCCCcEEEEccCC
Q psy9141           4 NSKKSVVIVGG-GLVGSLSACMFAKNQYEVNLYEARE   39 (379)
Q Consensus         4 m~~~dVvIVGa-GpaGl~~A~~La~~G~~V~viE~~~   39 (379)
                      ++..-++|.|| +=.|.++|..|++.|.+|++.+++.
T Consensus         3 L~gK~~lITGas~GIG~aia~~l~~~G~~V~~~~r~~   39 (242)
T d1ulsa_           3 LKDKAVLITGAAHGIGRATLELFAKEGARLVACDIEE   39 (242)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            44556788886 4479999999999999999999875